BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781187|ref|YP_003065600.1| putative phage terminase,
large subunit [Candidatus Liberibacter asiaticus str. psy62]
         (367 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254781187|ref|YP_003065600.1| putative phage terminase, large subunit [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040864|gb|ACT57660.1| putative phage terminase, large subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 367

 Score =  368 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 367/367 (100%), Positives = 367/367 (100%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME
Sbjct: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
           AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL
Sbjct: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER
Sbjct: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
           PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI
Sbjct: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240

Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
           FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN
Sbjct: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360
           YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG
Sbjct: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360

Query: 361 CPVGSSI 367
           CPVGSSI
Sbjct: 361 CPVGSSI 367


>gi|254781215|ref|YP_003065628.1| putative phage terminase, large subunit [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040892|gb|ACT57688.1| putative phage terminase, large subunit [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|317120680|gb|ADV02503.1| putative phage terminase large subunit [Liberibacter phage SC1]
 gi|317120824|gb|ADV02645.1| putative phage terminase large subunit [Candidatus Liberibacter
           asiaticus]
          Length = 511

 Score =  368 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 252/359 (70%), Positives = 299/359 (83%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           M R + T+ + EQ+L +++   E  LSF NFV+ FFPWG KG PLE FS P  WQLEFME
Sbjct: 1   MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            VD HC ++VNN NP +FK AISAGRGIGKTTLNAW++LWL+STRPG+S+IC+ANSETQL
Sbjct: 61  VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           K TLWAEVSKWLS+LP++HWFEMQSLSLHP+ WY+++L  S+GIDSKHY+  CRTYSEER
Sbjct: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
           PDTFVG HNT+GMA+ NDEASGTPD+IN  ILGF TE N NRFWIMTSN RRL+G FY+I
Sbjct: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240

Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
           FN PL+DWKR+QIDTRTVEGID  FHEGII+RYGLDSDV R+E+ GQFPQQ++++FIP N
Sbjct: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
            IEEA++RE   D YAPLIMGCDIA EGGD TVVV RRG +IEH+FDWS   ++ TN +
Sbjct: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNK 359


>gi|317120722|gb|ADV02544.1| putative phage terminase large subunit [Liberibacter phage SC2]
 gi|317120783|gb|ADV02604.1| putative phage terminase large subunit [Candidatus Liberibacter
           asiaticus]
          Length = 516

 Score =  358 bits (918), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 257/359 (71%), Positives = 302/359 (84%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           M R + T+ + EQ+L +++   E  LSF NFV+ FFPWG KG PLE FS P  WQLEFME
Sbjct: 1   MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            VD HC ++VNN NP +FK AISAGRGIGKTTLNAW++LWL+STRPG+S+IC+ANSETQL
Sbjct: 61  VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           K TLWAEVSKWLS+LP++HWFEMQSLSLHP+ WY+++L  S+GIDSKHY+  CRTYSEER
Sbjct: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
           PDTFVG HNT+GMA+ NDEASGTPD+IN  ILGF TE N NRFWIMTSN RRL+G FY+I
Sbjct: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240

Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
           FN PL+DWKR+QIDTRTVEGID  FHEGII+RYGLDSDV R+E+ GQFPQQ++++FIP  
Sbjct: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPQQ 300

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
           YI EA+ R AI D YAPLIMGCDIAGEG DKTVVV RRGNIIE IFDWS +LI+ TN++
Sbjct: 301 YIVEALERVAIPDPYAPLIMGCDIAGEGEDKTVVVLRRGNIIERIFDWSGELIEVTNRK 359


>gi|315122902|ref|YP_004063391.1| putative phage terminase, large subunit [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496304|gb|ADR52903.1| putative phage terminase, large subunit [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 509

 Score =  328 bits (841), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 262/351 (74%), Positives = 298/351 (84%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           M R + T  + EQEL E++   +  LSF NFV+R FPW      L +FS+P RWQL+FME
Sbjct: 1   MTRELPTKIEHEQELMELMFSDDIKLSFTNFVLRLFPWSEANTSLANFSRPRRWQLDFME 60

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
           AVD  C  NV+N +P IFK A+SAGRGIGKTTLNAWMMLWLISTRPGMSI+C+ANSETQL
Sbjct: 61  AVDTDCLFNVDNPDPKIFKGAVSAGRGIGKTTLNAWMMLWLISTRPGMSILCLANSETQL 120

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           K+TLWAEVSKWLSMLP++HWFEMQSLSLHP+ WYAE LE++ GIDSKHYTITCRTYSEER
Sbjct: 121 KSTLWAEVSKWLSMLPNKHWFEMQSLSLHPAVWYAEALEKNFGIDSKHYTITCRTYSEER 180

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
           PDTFVG HNT+GMA+FNDEASGTPD+IN SILGFFTE N NRFW+MTSN RRLNGWFYDI
Sbjct: 181 PDTFVGHHNTYGMAIFNDEASGTPDVINTSILGFFTENNANRFWVMTSNPRRLNGWFYDI 240

Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
           FN+PLEDW+R+QIDTRTVEGID  FHE II+RYGLDSDV R+E+LGQFPQQ++N+FIP  
Sbjct: 241 FNVPLEDWQRFQIDTRTVEGIDPNFHENIIARYGLDSDVTRVEVLGQFPQQDINSFIPFY 300

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
            IEEA++RE I D YAPL+MGCDIAGEGGD TVVV RRG  IEHIFDWS  
Sbjct: 301 RIEEALNREPIKDPYAPLVMGCDIAGEGGDNTVVVLRRGTNIEHIFDWSGL 351


>gi|315121940|ref|YP_004062429.1| putative phage terminase, large subunit [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495342|gb|ADR51941.1| putative phage terminase, large subunit [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 509

 Score =  327 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 264/351 (75%), Positives = 298/351 (84%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           M R + T  + EQEL E++   +  LSF NFV+R FPW      L +FS+P RWQL+FME
Sbjct: 1   MTRELPTKIEHEQELMELMFSDDIKLSFTNFVLRLFPWSEANTSLANFSRPRRWQLDFME 60

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
           AVD  C  NV+N +P IFK A+SAGRGIGKTTLNAWMMLWLISTRPGMSI+C+ANSETQL
Sbjct: 61  AVDTDCLFNVDNPDPKIFKGAVSAGRGIGKTTLNAWMMLWLISTRPGMSILCLANSETQL 120

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           K+TLWAEVSKWLSMLP++HWFEMQSLSLHP+ WYAE LE++ GIDSKHYTITCRTYSEER
Sbjct: 121 KSTLWAEVSKWLSMLPNKHWFEMQSLSLHPAVWYAEALEKNFGIDSKHYTITCRTYSEER 180

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
           PDTFVG HNT+GMA+FNDEASGTPD+IN SILGFFTE N NRFW+MTSN RRL GWFYDI
Sbjct: 181 PDTFVGHHNTYGMAIFNDEASGTPDVINTSILGFFTENNANRFWVMTSNPRRLKGWFYDI 240

Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
           FN+PLEDW+R+QIDTRTVEGID  FHEGIISRYGLDSDV R+E+LGQFPQQ++N+FIP  
Sbjct: 241 FNVPLEDWQRFQIDTRTVEGIDPSFHEGIISRYGLDSDVTRVEVLGQFPQQDINSFIPFY 300

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
            IEEA++RE I D YAPLIMGCDIAGEGGD TVVV RRG  IEHIFDWS  
Sbjct: 301 RIEEALNREPIKDPYAPLIMGCDIAGEGGDNTVVVLRRGTNIEHIFDWSGL 351


>gi|309702815|emb|CBJ02146.1| putative terminase, large subunit [Escherichia coli ETEC H10407]
          Length = 493

 Score =  286 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 88/349 (25%), Positives = 154/349 (44%), Gaps = 18/349 (5%)

Query: 6   STDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVH 65
           +     EQ + ++   A        + +  FPWG +G  L H + P +WQ +    +  H
Sbjct: 4   AAMSPEEQLVEDI---AGFTYDPLGYALYAFPWGEEGTELAHATGPRKWQADAFREIRDH 60

Query: 66  CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW 125
             +      P +   A ++G GIGK+   + ++ W +ST     ++  AN++ QL+   W
Sbjct: 61  LQNPATRHQPIM--LARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTW 118

Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185
            E+ KW ++   + WF   + +++ +    +          K +      +SE   + F 
Sbjct: 119 PEIIKWSNLAITKEWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAFA 168

Query: 186 GPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244
           G HN    + V  DEAS   D++ +   G  T+ +    W+   N  R  G F + F   
Sbjct: 169 GLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKY 228

Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE 304
              WK  QID+RTVEG +    +  +  YG DSD  ++ + G FP    N FIP    + 
Sbjct: 229 KHRWKCAQIDSRTVEGTNKEQLQKWVDDYGEDSDFVKVRVRGIFPDASENQFIPSGLTQP 288

Query: 305 AMSREAIDD--LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
           A+ R        +A +++G D + +G D  V+  R+G   + + +W   
Sbjct: 289 AVGRVITPAQVQHAAVVLGVDPSHQGKDPAVIYLRQGLHCKKLGEWQRT 337


>gi|268589373|ref|ZP_06123594.1| conserved hypothetical protein [Providencia rettgeri DSM 1131]
 gi|291315400|gb|EFE55853.1| conserved hypothetical protein [Providencia rettgeri DSM 1131]
          Length = 493

 Score =  285 bits (728), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 95/352 (26%), Positives = 157/352 (44%), Gaps = 18/352 (5%)

Query: 4   LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63
           +I T    EQ ++++ M         ++ +  FPWG  G  LE+ + P +WQ E +  + 
Sbjct: 1   MIDTMSPEEQLINDIGMFT---HDPLSYALYAFPWGEAGTELENANGPRQWQAEALNEIG 57

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
            H  +      P   + A ++G GIGK+   + ++ W + T     ++  AN+E QL+  
Sbjct: 58  EHLRNPETRHQP--LQLARASGHGIGKSAFISMIIKWGMDTCEDCKVVVTANTENQLRTK 115

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
            W E++KW  +   + WF     +++ +              +  +      +SE   + 
Sbjct: 116 TWPEIAKWQRLSITKDWFTYTKTAIYSNDPNH----------ANAWRADAVPWSENNTEA 165

Query: 184 FVGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242
           F G HN    + +  DEAS   D++ +   G  T+ N    WI   N  R  G F + F 
Sbjct: 166 FAGLHNQGKRIILIFDEASNIADLVWEVAEGALTDENTEIIWIAFGNPTRNTGRFRECFR 225

Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302
                WK  QID+RTVEG +    E  I  YG+D D  ++ + G FP      FIP    
Sbjct: 226 KFKHRWKTKQIDSRTVEGTNKEQIEKWIQDYGVDDDFVKVRVRGIFPSTSEKQFIPTGLT 285

Query: 303 EEAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
           + AM R     +  +AP+I+G D A  G D  V+  R+G   + ++  S  +
Sbjct: 286 DAAMKRTVTQAEVSHAPIIIGVDPAYSGDDDAVIYLRQGLHSKCLWTGSKTI 337


>gi|212710820|ref|ZP_03318948.1| hypothetical protein PROVALCAL_01888 [Providencia alcalifaciens DSM
           30120]
 gi|212686517|gb|EEB46045.1| hypothetical protein PROVALCAL_01888 [Providencia alcalifaciens DSM
           30120]
          Length = 493

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 96/352 (27%), Positives = 157/352 (44%), Gaps = 18/352 (5%)

Query: 4   LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63
           +I T    EQ ++++ M         ++ +  FPWG  G  LE+ S P +WQ E +  + 
Sbjct: 1   MIETMSPEEQLINDIGMFT---HDPLSYALYAFPWGEAGTELENASGPRQWQAEALNEIG 57

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
            H  +      P   + A ++G GIGK+   + ++ W + T     ++  AN+E QL+  
Sbjct: 58  EHLRNPETRHQP--LQLARASGHGIGKSAFISMIIKWGMDTCEDCKVVVTANTENQLRTK 115

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
            W E++KW  +   + WF     +++ +              +  +      +SE   + 
Sbjct: 116 TWPEIAKWQRLSITKDWFTCTKTAIYSNDPNH----------ANAWRADAVPWSENNTEA 165

Query: 184 FVGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242
           F G HN    + +  DEAS   D++ +   G  T+ N    WI   N  R  G F + F 
Sbjct: 166 FAGLHNQGKRIILVFDEASNIADLVWEVAEGALTDENTEIIWIAFGNPTRNTGRFRECFR 225

Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302
                WK  QID+RTVEG +    E  I  YG+D D  ++ + G FP      FIP    
Sbjct: 226 KFKHRWKTKQIDSRTVEGTNKEQIEKWIQDYGVDDDFVKVRVRGIFPSTSEKQFIPTGLT 285

Query: 303 EEAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
           + AM R     +  +AP+I+G D A  G D  V+  R+G   + ++  S  +
Sbjct: 286 DAAMKRTVTQAEVSHAPIILGVDPAYSGDDDAVIYLRQGLHSKCLWTGSKTI 337


>gi|215487825|ref|YP_002330256.1| predicted terminase, large subunit [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215265897|emb|CAS10306.1| predicted terminase, large subunit [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 493

 Score =  284 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 88/348 (25%), Positives = 152/348 (43%), Gaps = 18/348 (5%)

Query: 7   TDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHC 66
                EQ + ++   A        + +  FPWG  G  L H + P +WQ +    +  H 
Sbjct: 5   AMSPEEQLVEDI---ASFTYDPLGYALYAFPWGEDGTELAHATGPRKWQADAFREIRDHL 61

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126
            +      P +   A ++G GIGK+   + ++ W +ST     ++  AN++ QL+   W 
Sbjct: 62  QNPATRHQPLM--LARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWP 119

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
           E+ KW ++   + WF   + +++ +    +          K +      +SE   + F G
Sbjct: 120 EIIKWSNLAITKEWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAFAG 169

Query: 187 PHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL 245
            HN    + V  DEAS   D++ +   G  T+ +    W+   N  R  G F + F    
Sbjct: 170 LHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYK 229

Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA 305
             WK  QID+RTVEG +    +  +  YG DSD  ++ + G FP    N FIP    + A
Sbjct: 230 HRWKCAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKVRVRGIFPDASENQFIPSGLTQPA 289

Query: 306 MSREAIDD--LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
           + R        +A +++G D + +G D  V+  R+G   + + +W   
Sbjct: 290 VGRVITPAQVQHAAVVLGVDPSHQGKDPAVIYLRQGLHCKKLGEWQRT 337


>gi|303328395|ref|ZP_07358832.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3]
 gi|302861389|gb|EFL84326.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3]
          Length = 500

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 93/337 (27%), Positives = 147/337 (43%), Gaps = 16/337 (4%)

Query: 25  VLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISA 84
                 FV+  FPWG  G   ++   P  WQ E +  +     +  +    ++ + A+S+
Sbjct: 26  AADPLGFVLFAFPWG-GGALADYPDGPDVWQREILRGMGEQLSTGASA--ASVIREAVSS 82

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
           G G+GK+ L AW++LW +ST      +  AN+E QLK   WAE++KW  +    +WF+  
Sbjct: 83  GHGVGKSALVAWIILWAMSTFSDTRGVVTANTENQLKGKTWAELAKWHRLCLCGYWFDCT 142

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-MAVFNDEASGT 203
           + +L  +    E          K + +    +SE   + F G HN    + +  DEAS  
Sbjct: 143 ATALISTQAGHE----------KTWRVDMVAWSERNTEAFAGLHNKGRRVLLIFDEASAI 192

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
           PD I +   G  T+ +    W    N  R  G F + F      W   ++D+RT    D 
Sbjct: 193 PDAIWEVSEGALTDADTEIIWCCFGNPTRNTGRFRECFGRYAHRWNTRRVDSRTAAMTDK 252

Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY--APLIMG 321
                 +  YG DSD  R+ + G+FP+     FI  + + EA  R    D Y  AP I+G
Sbjct: 253 NQLAQWVEDYGEDSDFVRVRVRGEFPRAGDRQFISSDIVHEARGRSLKPDQYSFAPRILG 312

Query: 322 CDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQ 358
            D+A  G D++V+  R+G        +          
Sbjct: 313 VDVARSGSDQSVITRRQGLACLEQRKFRGLDTVTLAG 349


>gi|323156136|gb|EFZ42295.1| terminase large subunit [Escherichia coli EPECa14]
          Length = 491

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 93/350 (26%), Positives = 155/350 (44%), Gaps = 18/350 (5%)

Query: 5   ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64
            +     EQ + ++   A        + +  FPWG +G  L H + P +WQ +    +  
Sbjct: 3   DTALSPEEQLIEDI---AGFTHDPLGYALYAFPWGEEGTELAHATGPRQWQADAFREIRD 59

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124
           H  +      P +   A+++G GIGK+   + ++ W +ST     ++  AN++ QL+   
Sbjct: 60  HLQNPATRYQPLM--LALASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKT 117

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
           W E+ KW ++   + WF   + +++ +    +          K +      +SE   + F
Sbjct: 118 WPEIIKWSNLAITKDWFTCTATAMYSNDLGHD----------KRWRADAIPWSEHNTEAF 167

Query: 185 VGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243
            G HN    + V  DEAS   D++ +   G  T+ +    W+   N  R  G F + F  
Sbjct: 168 AGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRK 227

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
               WK  QID+RTVEG +    +  +  YG DSD  +I + G FP      FIP    +
Sbjct: 228 YKHRWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTD 287

Query: 304 EAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
           EAM R        YAP+I+G D A  G D  V+  R+G   + ++  +  
Sbjct: 288 EAMKRVVTAAQVAYAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKT 337


>gi|304398406|ref|ZP_07380280.1| terminase, large subunit [Pantoea sp. aB]
 gi|304354272|gb|EFM18645.1| terminase, large subunit [Pantoea sp. aB]
          Length = 490

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 82/329 (24%), Positives = 144/329 (43%), Gaps = 15/329 (4%)

Query: 26  LSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAG 85
                + +  FPWG +G  L +   P +WQ +  + +  H  +      P +     ++G
Sbjct: 20  HDPFGYALYAFPWGEEGTDLAYSKGPRQWQEDAFKQIGAHLQNPDTRHQPLM--IGRASG 77

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
            GIGK+   + ++ W + T     ++  AN+E QL+   W E++KW  +   + WF   +
Sbjct: 78  HGIGKSAFISMLVKWGMDTCEDCKVVVTANTENQLRTKTWPEIAKWQRLSITQDWFTCTA 137

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT-HGMAVFNDEASGTP 204
            +++ +              +K +      +SE   + F G HN    + +  DEAS   
Sbjct: 138 TAIYSNDPSH----------AKSWRADAIPWSENNTEAFAGLHNERKRIILIFDEASNIA 187

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264
           D++ +   G  T+ N    W+   N  R  G F + F      WK  QID+R+VEG +  
Sbjct: 188 DLVWEVAEGALTDENTEIIWVAFGNPTRNTGRFRECFRKLRHRWKTAQIDSRSVEGTNKE 247

Query: 265 FHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIMGC 322
             +  +  YG DSD  ++ + G FP      FIP    + A+ R        +A  ++G 
Sbjct: 248 QIQKWVDDYGEDSDFVKVRVRGLFPSASEAQFIPTGLTDAAVGRVITPGQVAHAATVIGV 307

Query: 323 DIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
           D A +GGD  V+  R+G   + + ++   
Sbjct: 308 DPAHQGGDPAVIYLRQGLHTKKLGEYQRT 336


>gi|300898423|ref|ZP_07116764.1| conserved hypothetical protein [Escherichia coli MS 198-1]
 gi|300357890|gb|EFJ73760.1| conserved hypothetical protein [Escherichia coli MS 198-1]
          Length = 491

 Score =  276 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 18/350 (5%)

Query: 5   ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64
            +     EQ + ++   A        + +  FPWG +G  L H + P +WQ +    +  
Sbjct: 3   DTALSPEEQLIEDI---AGFTHDPLGYALYAFPWGEEGTELAHATGPRKWQADAFREIRD 59

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124
           H  +      P +   A ++G GIGK+   + ++ W +ST     ++  AN++ QL+   
Sbjct: 60  HLQNPETRYQPLM--LARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKT 117

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
           W E+ KW ++   + WF   + +++ +    +          K +      +SE   + F
Sbjct: 118 WPEIIKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAF 167

Query: 185 VGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243
            G HN    + V  DEAS   D++ +   G  T+ +    W+   N  R  G F + F  
Sbjct: 168 AGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRK 227

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
               WK  QID+RTVEG +    +  +  YG DSD  +I + G FP      FIP    +
Sbjct: 228 YKHRWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTD 287

Query: 304 EAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
           EAM R        +AP+I+G D A  G D  V+  R+G   + ++  +  
Sbjct: 288 EAMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKT 337


>gi|332344357|gb|AEE57691.1| terminase, large subunit [Escherichia coli UMNK88]
          Length = 491

 Score =  276 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 92/349 (26%), Positives = 154/349 (44%), Gaps = 18/349 (5%)

Query: 6   STDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVH 65
           +     EQ + ++   A        + +  FPWG +G  L H + P +WQ +    +  H
Sbjct: 4   AAMSPEEQLVEDI---ASFTYDPLGYALYAFPWGEEGTELAHATGPRKWQADAFREIRDH 60

Query: 66  CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW 125
             +      P +   A ++G GIGK+   + ++ W +ST     ++  AN++ QL+   W
Sbjct: 61  LQNPATRHQPLM--LARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTW 118

Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185
            E+ KW ++   + WF   + +++ +    +          K +      +SE   + F 
Sbjct: 119 PEIIKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAFA 168

Query: 186 GPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244
           G HN    + V  DEAS   D++ +   G  T+ +    W+   N  R  G F + F   
Sbjct: 169 GLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKY 228

Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE 304
              WK  QID+RTVEG +    +  +  YG DSD  +I + G FP      FIP    +E
Sbjct: 229 KHRWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDE 288

Query: 305 AMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
           AM R        +AP+I+G D A  G D  V+  R+G   + ++  +  
Sbjct: 289 AMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKT 337


>gi|327252187|gb|EGE63859.1| terminase large subunit [Escherichia coli STEC_7v]
          Length = 491

 Score =  276 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 18/350 (5%)

Query: 5   ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64
            +     EQ + ++   A        + +  FPWG +G  L H + P +WQ +    +  
Sbjct: 3   DTALSPEEQLIEDI---AGFTHDPLGYALYAFPWGEEGTELAHATGPRQWQADAFREIRD 59

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124
           H  +      P +   A ++G GIGK+   + ++ W +ST     ++  AN++ QL+   
Sbjct: 60  HLQNPATRYQPLM--LARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKT 117

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
           W E+ KW ++   + WF   + +++ +    +          K +      +SE   + F
Sbjct: 118 WPEIIKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAF 167

Query: 185 VGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243
            G HN    + V  DEAS   D++ +   G  T+ +    W+   N  R  G F + F  
Sbjct: 168 AGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRK 227

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
               WK  QID+RTVEG +    +  +  YG DSD  +I + G FP      FIP    +
Sbjct: 228 YKHRWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTD 287

Query: 304 EAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
           EAM R        +AP+I+G D A  G D  V+  R+G   + ++  +  
Sbjct: 288 EAMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKT 337


>gi|331648179|ref|ZP_08349269.1| conserved hypothetical protein [Escherichia coli M605]
 gi|331043039|gb|EGI15179.1| conserved hypothetical protein [Escherichia coli M605]
          Length = 491

 Score =  275 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 18/350 (5%)

Query: 5   ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64
            +     EQ + ++   A        + +  FPWG +G  L H + P +WQ +    +  
Sbjct: 3   DTALSPEEQLIEDI---AGFTHDPLGYALYAFPWGEEGTELAHATGPRQWQADAFREIRD 59

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124
           H  +      P +   A ++G GIGK+   + ++ W +ST     ++  AN++ QL+   
Sbjct: 60  HLQNPETRYQPLM--LARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKT 117

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
           W E+ KW ++   + WF   + +++ +    +          K +      +SE   + F
Sbjct: 118 WPEIIKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAF 167

Query: 185 VGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243
            G HN    + V  DEAS   D++ +   G  T+ +    W+   N  R  G F + F  
Sbjct: 168 AGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRK 227

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
               WK  QID+RTVEG +    +  +  YG DSD  +I + G FP      FIP    +
Sbjct: 228 YKHRWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTD 287

Query: 304 EAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
           EAM R        +AP+I+G D A  G D  V+  R+G   + ++  +  
Sbjct: 288 EAMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKT 337


>gi|298381721|ref|ZP_06991320.1| terminase large subunit protein [Escherichia coli FVEC1302]
 gi|301019339|ref|ZP_07183525.1| conserved hypothetical protein [Escherichia coli MS 196-1]
 gi|298279163|gb|EFI20677.1| terminase large subunit protein [Escherichia coli FVEC1302]
 gi|299882256|gb|EFI90467.1| conserved hypothetical protein [Escherichia coli MS 196-1]
 gi|323948690|gb|EGB44595.1| hypothetical protein ERKG_04913 [Escherichia coli H252]
          Length = 491

 Score =  275 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 18/350 (5%)

Query: 5   ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64
            +     EQ + ++   A        + +  FPWG +G  L H + P +WQ +    +  
Sbjct: 3   DTALSPEEQLIEDI---AGFTHDPLGYALYAFPWGEEGTELAHATGPRQWQADAFREIRD 59

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124
           H  +      P +   A ++G GIGK+   + ++ W +ST     ++  AN++ QL+   
Sbjct: 60  HLQNPETRYQPLM--LARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKT 117

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
           W E+ KW ++   + WF   + +++ +    +          K +      +SE   + F
Sbjct: 118 WPEIIKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAF 167

Query: 185 VGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243
            G HN    + V  DEAS   D++ +   G  T+ +    W+   N  R  G F + F  
Sbjct: 168 AGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRK 227

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
               WK  QID+RTVEG +    +  +  YG DSD  +I + G FP      FIP    +
Sbjct: 228 YKHRWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTD 287

Query: 304 EAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
           EAM R        +AP+I+G D A  G D  V+  R+G   + ++  +  
Sbjct: 288 EAMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKT 337


>gi|294491573|gb|ADE90329.1| putative phage terminase, large subunit [Escherichia coli IHE3034]
          Length = 491

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 18/350 (5%)

Query: 5   ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64
            +     EQ + ++   A        + +  FPWG +G  L H + P +WQ +    +  
Sbjct: 3   DTALSPEEQLIEDI---AGFTHDPLGYALYAFPWGEEGTELAHATGPRQWQADAFREIRD 59

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124
           H  +      P +   A ++G GIGK+   + ++ W +ST     ++  AN++ QL+   
Sbjct: 60  HLQNPETRYQPLM--LARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKT 117

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
           W E+ KW ++   + WF   + +++ +    +          K +      +SE   + F
Sbjct: 118 WPEIIKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAF 167

Query: 185 VGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243
            G HN    + V  DEAS   D++ +   G  T+ +    W+   N  R  G F + F  
Sbjct: 168 AGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRK 227

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
               WK  QID+RTVEG +    +  +  YG DSD  +I + G FP      FIP    +
Sbjct: 228 YKHRWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTD 287

Query: 304 EAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
           EAM R        +AP+I+G D A  G D  V+  R+G   + ++  +  
Sbjct: 288 EAMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKT 337


>gi|324008564|gb|EGB77783.1| hypothetical protein HMPREF9532_01752 [Escherichia coli MS 57-2]
          Length = 491

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 18/350 (5%)

Query: 5   ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64
            +     EQ + ++   A        + +  FPWG +G  L H + P +WQ +    +  
Sbjct: 3   DTALSPEEQLIEDI---AGFTHDPLGYALYAFPWGEEGTELAHATGPRQWQADAFREIRD 59

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124
           H  +      P +   A ++G GIGK+   + ++ W +ST     ++  AN++ QL+   
Sbjct: 60  HLQNPETRYQPLM--LARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKT 117

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
           W E+ KW ++   + WF   + +++ +    +          K +      +SE   + F
Sbjct: 118 WPEIIKWSNLAITKDWFTCTATAMYSNDLGHD----------KRWRADAIPWSEHNTEAF 167

Query: 185 VGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243
            G HN    + V  DEAS   D++ +   G  T+ +    W+   N  R  G F + F  
Sbjct: 168 AGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRK 227

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
               WK  QID+RTVEG +    +  +  YG DSD  +I + G FP      FIP    +
Sbjct: 228 YKHRWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTD 287

Query: 304 EAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
           EAM R        +AP+I+G D A  G D  V+  R+G   + ++  +  
Sbjct: 288 EAMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKT 337


>gi|218700994|ref|YP_002408623.1| putative phage terminase, large subunit [Escherichia coli IAI39]
 gi|218370980|emb|CAR18807.1| putative phage terminase, large subunit [Escherichia coli IAI39]
          Length = 491

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 93/351 (26%), Positives = 156/351 (44%), Gaps = 17/351 (4%)

Query: 4   LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63
           +  T    E++L + +  A        + +  FPWG +G  L H + P +WQ +    + 
Sbjct: 1   MTDTALSPEEQLIDDI--AGFTHDPLGYALYAFPWGEEGTELAHATGPRQWQADAFREIR 58

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
            H  +      P +   A ++G GIGK+   + ++ W +ST     ++  AN++ QL+  
Sbjct: 59  DHLQNPETRYQPLM--LARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTK 116

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
            W E+ KW ++   + WF   + +++ +    +          K +      +SE   + 
Sbjct: 117 TWPEIIKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEA 166

Query: 184 FVGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242
           F G HN    + V  DEAS   D++ +   G  T+ +    W+   N  R  G F + F 
Sbjct: 167 FAGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFR 226

Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302
                WK  QID+RTVEG +    +  +  YG DSD  +I + G FP      FIP    
Sbjct: 227 KYKHRWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLT 286

Query: 303 EEAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
           +EAM R        +AP+I+G D A  G D  V+  R+G   + ++  +  
Sbjct: 287 DEAMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKT 337


>gi|117624715|ref|YP_853628.1| putative phage terminase, large subunit [Escherichia coli APEC O1]
 gi|115513839|gb|ABJ01914.1| putative phage terminase, large subunit [Escherichia coli APEC O1]
          Length = 491

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 91/350 (26%), Positives = 154/350 (44%), Gaps = 18/350 (5%)

Query: 5   ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64
            +     EQ + ++   A        + +  FPWG +G  L H + P +WQ +    +  
Sbjct: 3   DTALSPEEQLIEDI---AGFTHDPLGYALYAFPWGEEGTELAHATGPRQWQADAFREIRD 59

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124
           H  +      P +   A ++G GIGK+   + ++ W +ST     ++  AN++ QL+   
Sbjct: 60  HLQNPETRYQPLM--LARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKT 117

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
           W E+ KW ++   + WF   + +++ +    +          K +      +SE   + F
Sbjct: 118 WPEIIKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAF 167

Query: 185 VGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243
            G HN    + V  DEAS   D++ +   G  T+ +    W+   N  R  G F + F  
Sbjct: 168 AGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRK 227

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
               WK  QID+RTVEG +    +  +  YG DSD  +I + G FP      FIP    +
Sbjct: 228 YKHRWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTD 287

Query: 304 EAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
           EAM R        ++P+I+G D A  G D  V+  R+G   + ++  +  
Sbjct: 288 EAMKRVVTAAQVAHSPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKT 337


>gi|301046412|ref|ZP_07193572.1| conserved hypothetical protein [Escherichia coli MS 185-1]
 gi|300301638|gb|EFJ58023.1| conserved hypothetical protein [Escherichia coli MS 185-1]
          Length = 491

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 18/350 (5%)

Query: 5   ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64
           ++     EQ + ++   A        + +  FPWG  G  L H + P +WQ +    +  
Sbjct: 3   VAAMSPEEQLVEDI---ASFTYDPLGYALYAFPWGEDGTELAHATGPRQWQADAFREIRD 59

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124
           H  +      P +   A ++G GIGK+   + ++ W +ST     ++  AN++ QL+   
Sbjct: 60  HLQNPETRYQPLM--LARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKT 117

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
           W E+ KW ++   + WF   + +++ +    +          K +      +SE   + F
Sbjct: 118 WPEIIKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAF 167

Query: 185 VGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243
            G HN    + V  DEAS   D++ +   G  T+ +    W+   N  R  G F + F  
Sbjct: 168 AGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRK 227

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
               WK  QID+RTVEG +    +  +  YG DSD  +I + G FP      FIP    +
Sbjct: 228 YKHRWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTD 287

Query: 304 EAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
           EAM R        +AP+I+G D A  G D  V+  R+G   + ++  +  
Sbjct: 288 EAMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKT 337


>gi|89152423|ref|YP_512256.1| putative terminase large subunit [Escherichia phage phiV10]
 gi|74055446|gb|AAZ95895.1| putative terminase large subunit [Escherichia phage phiV10]
          Length = 491

 Score =  274 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 91/350 (26%), Positives = 153/350 (43%), Gaps = 18/350 (5%)

Query: 5   ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64
            +     EQ + ++   A        + +  FPWG +G  L H + P +WQ +    +  
Sbjct: 3   DTALSPEEQLIEDI---AGFTHDPLGYALYAFPWGEEGTELAHATGPRQWQADAFREIRD 59

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124
           H  +      P +   A ++G GIGK+   + ++ W +ST     ++  AN++ QL+   
Sbjct: 60  HLQNPETRYQPLM--LARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKT 117

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
           W E+ KW ++   + WF   + +++ +    +          K +      +SE   + F
Sbjct: 118 WPEIIKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAF 167

Query: 185 VGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243
            G HN    + V  DEAS   D++ +   G  T+ +    W+   N  R  G F + F  
Sbjct: 168 AGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRK 227

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
               WK  QID+RTVEG +    +  +  YG  SD  +I + G FP      FIP    +
Sbjct: 228 YKHRWKTAQIDSRTVEGTNKQQLQKWVDDYGEGSDFVKIRVRGIFPDASELQFIPTGLTD 287

Query: 304 EAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
           EAM R        +AP+I+G D A  G D  V+  R+G   + ++  +  
Sbjct: 288 EAMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKT 337


>gi|227355862|ref|ZP_03840255.1| phage terminase, large subunit [Proteus mirabilis ATCC 29906]
 gi|227164181|gb|EEI49078.1| phage terminase, large subunit [Proteus mirabilis ATCC 29906]
          Length = 494

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 90/342 (26%), Positives = 147/342 (42%), Gaps = 18/342 (5%)

Query: 9   QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68
              EQ + ++   A        +    FPWG  G  LE ++ P +WQ E +  +  H  +
Sbjct: 8   SPEEQLIEDI---ASFTHDPLGYAYYAFPWGEAGGELEEYNGPRQWQAEALNEIGEHLRN 64

Query: 69  NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
                 P +   A ++G GIGK+   + ++ W + T     ++  AN+E QL+   W E+
Sbjct: 65  PKTRHQPLL--LARASGHGIGKSAFISMIIKWGMDTCEDCKVVVTANTENQLRTKTWPEI 122

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
           +KW  +    +WF     +++ +              +  +      +SE   + F G H
Sbjct: 123 AKWQRLSLTNNWFTCTKTAIYSNDPNH----------ANAWRADAVPWSENNTEAFAGLH 172

Query: 189 NT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
           N    + +  DEAS   D++ +   G  T+      WI   N  R  G F + F      
Sbjct: 173 NKGKRIILVFDEASNIADLVWEVAEGALTDEGTEIIWIAFGNPTRNTGRFRECFRKFKHR 232

Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
           W   QID+RTVEG +    +     YG DSD  ++ + G FP      FIP    +EAM 
Sbjct: 233 WNTKQIDSRTVEGSNKEQIKNWEEDYGEDSDFFKVRVRGVFPSASELQFIPTGLTDEAMK 292

Query: 308 REA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
           R     +  +AP+I+G D A  G D  V+  R+G   + ++ 
Sbjct: 293 RIVTQAEVAHAPVIIGVDPAYSGIDDAVIYLRQGLFSKCLWT 334


>gi|30387381|ref|NP_848210.1| terminase large subunit [Enterobacteria phage epsilon15]
 gi|30266036|gb|AAO06065.1| terminase large subunit [Salmonella phage epsilon15]
          Length = 491

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 91/351 (25%), Positives = 155/351 (44%), Gaps = 17/351 (4%)

Query: 4   LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63
           + +     E++L E +  A        + +  FPWG  G  L H + P +WQ +    + 
Sbjct: 1   MTAAAISTEEQLVEDI--ASFTYDPLGYALYAFPWGEDGTELAHATGPRKWQADAFREIR 58

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
            H  +      P +   A ++G GIGK+   + ++ W +ST     ++  AN++ QL+  
Sbjct: 59  DHLQNPATRHQPLM--LARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTK 116

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
            W E+ KW ++   + WF   + +++ +    +          K +      +SE   + 
Sbjct: 117 TWPEIIKWSNLAITKEWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEA 166

Query: 184 FVGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242
           F G HN    + V  DEAS   D++ +   G  T+ +    W+   N  R  G F + F 
Sbjct: 167 FAGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFR 226

Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302
                WK  QID+RTVEG +    +  +  YG +SD  ++ + G FP      FIP    
Sbjct: 227 KYKHRWKCAQIDSRTVEGTNKQQLQKWVDDYGEESDFVKVRVRGIFPDASELQFIPTGLT 286

Query: 303 EEAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
           +EAM R        +AP+I+G D A  G D  V+  R+G   + ++  +  
Sbjct: 287 DEAMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKT 337


>gi|262043569|ref|ZP_06016682.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039103|gb|EEW40261.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 491

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 91/350 (26%), Positives = 153/350 (43%), Gaps = 18/350 (5%)

Query: 5   ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64
            +     EQ + ++   A        + +  FPWG  G  L H + P +WQ +    +  
Sbjct: 3   DAALSPEEQLIDDI---ASFTHDPLGYALYAFPWGEDGTELAHATGPRKWQADAFREIRD 59

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124
           H  +      P +   A ++G GIGK+   + ++ W +ST     ++  AN++ QL+   
Sbjct: 60  HLQNPATRHQPLM--LARASGHGIGKSAFISMLINWAMSTCEDCKVVVTANTDNQLRTKT 117

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
           W E+ KW ++   + WF   + +++ +    +          K +      +SE   + F
Sbjct: 118 WPEIIKWSNLAITKEWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAF 167

Query: 185 VGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243
            G HN    + V  DEAS   D++ +   G  T+ +    W+   N  R  G F + F  
Sbjct: 168 AGLHNERKRIVVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRK 227

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
               WK  QID+RTVEG +    +  +  YG DSD  ++ + G FP      FIP    +
Sbjct: 228 YKHRWKCAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKVRVRGIFPDASELQFIPTGLTD 287

Query: 304 EAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
           EAM R    +   +AP I+G D A  G D  V+  R+G   + ++  +  
Sbjct: 288 EAMKRVVTAVQVAHAPRIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKT 337


>gi|320175050|gb|EFW50163.1| terminase B protein, putative [Shigella dysenteriae CDC 74-1112]
          Length = 480

 Score =  272 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 89/329 (27%), Positives = 147/329 (44%), Gaps = 15/329 (4%)

Query: 26  LSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAG 85
                + +  FPWG +G  L H + P +WQ +    +  H  +      P +   A ++G
Sbjct: 10  HDPLGYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQNPETRYQPLM--LARASG 67

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
            GIGK+   + ++ W +ST     ++  AN++ QL+   W E+ KW ++   + WF   +
Sbjct: 68  HGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTA 127

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT-HGMAVFNDEASGTP 204
            +++ +    +          K +      +SE   + F G HN    + V  DEAS   
Sbjct: 128 TAMYSNDPGHD----------KRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIA 177

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264
           D++ +   G  T+ +    W+   N  R  G F + F      WK  QID+RTVEG +  
Sbjct: 178 DLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKCAQIDSRTVEGTNKQ 237

Query: 265 FHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA--IDDLYAPLIMGC 322
             +  +  YG DSD  +I + G FP      FIP    +EAM R        +AP+I+G 
Sbjct: 238 QLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGV 297

Query: 323 DIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
           D A  G D  V+  R+G   + ++  +  
Sbjct: 298 DPAYSGVDDAVIYLRQGLHSKVLWTGNKT 326


>gi|330007152|ref|ZP_08305894.1| hypothetical protein HMPREF9538_03583 [Klebsiella sp. MS 92-3]
 gi|328535499|gb|EGF61959.1| hypothetical protein HMPREF9538_03583 [Klebsiella sp. MS 92-3]
          Length = 495

 Score =  271 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 93/351 (26%), Positives = 154/351 (43%), Gaps = 18/351 (5%)

Query: 4   LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63
           L   +Q  EQ + ++   A        + +  FPWG  G  L H S P +WQ +    + 
Sbjct: 6   LSPEEQLKEQLIDDI---ASFTHDPLGYALYAFPWGEDGTELAHASGPRQWQADAFREIG 62

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
            H  +      P +   + ++G GIGK+   + ++ W +ST     ++  AN++ QL+  
Sbjct: 63  EHLQNPATRHQPLM--ISRASGHGIGKSAFISMLINWAMSTCEDCKVVVTANTDNQLRTK 120

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
            W E+ KW ++   + WF   + +++ +    +          K +      +SE   + 
Sbjct: 121 TWPEIIKWSNLAITKEWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEA 170

Query: 184 FVGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242
           F G HN    + V  DEAS   D++ +   G  T+ +    W+   N  R  G F + F 
Sbjct: 171 FAGLHNERKRIVVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFR 230

Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302
                WK  QID+RTVEG +    +  +  YG DSD  ++ + G FP      FIP    
Sbjct: 231 KYKHRWKCAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKVRVRGIFPDASELQFIPTGLT 290

Query: 303 EEAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
           +EAM R        +AP I+G D A  G D  V+  R+G   + ++  +  
Sbjct: 291 DEAMKRVVTAAQVAHAPRIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKT 341


>gi|282848875|ref|ZP_06258265.1| conserved hypothetical protein [Veillonella parvula ATCC 17745]
 gi|282581380|gb|EFB86773.1| conserved hypothetical protein [Veillonella parvula ATCC 17745]
          Length = 483

 Score =  269 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 92/330 (27%), Positives = 148/330 (44%), Gaps = 15/330 (4%)

Query: 26  LSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAG 85
                FV   +PWG  G PLE+   P  WQ++ ++ +             T  + A+++G
Sbjct: 16  HDPLAFVYFAYPWGEPGTPLENMEGPDEWQIQILKDIGEQLKKG--KDLQTAIQEAVASG 73

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
            GIGK+ L +W++ + IST      +  AN+E QL+   W E+SKW +M   +  F   +
Sbjct: 74  HGIGKSALISWLIHFAISTHENTRGVVTANTEGQLRTKTWPELSKWHNMFIAKDLFTYTA 133

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT-HGMAVFNDEASGTP 204
            ++  S    E          K + I    +S+  P++F G HN  + + V  DEAS   
Sbjct: 134 TAIFSSDKDYE----------KTWRIDAIPWSKNSPESFAGLHNQGNRILVLFDEASAID 183

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264
           D+I +   G  T+ N    W    N  R +G F + F    + W  YQID+RTV+  +  
Sbjct: 184 DVIWEVTEGALTDANTEIIWCAFGNPTRNSGRFRECFRKYRKFWNTYQIDSRTVKISNKT 243

Query: 265 FHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL--YAPLIMGC 322
             E  +  YG DSD  ++ + G FP      FI     ++A  +        + P+I+G 
Sbjct: 244 KIEEWLEAYGEDSDFFKVRVRGVFPSASDLQFISTEIADKAQKQVYKPGQFEHLPVIIGV 303

Query: 323 DIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
           D A  G D   +V R+G  ++ +       
Sbjct: 304 DPAWTGSDSLEIVMRQGYYMKSLASIPKND 333


>gi|167032754|ref|YP_001667985.1| putative phage terminase large subunit [Pseudomonas putida GB-1]
 gi|166859242|gb|ABY97649.1| putative phage terminase, large subunit [Pseudomonas putida GB-1]
          Length = 499

 Score =  266 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 99/336 (29%), Positives = 158/336 (47%), Gaps = 14/336 (4%)

Query: 12  EQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVN 71
           EQEL   +  A        +V+  FPWG  G  L + + P +WQ E +E++     +   
Sbjct: 11  EQELANDI--ASFSDDPLGYVLYAFPWGEAGGELANKTGPRKWQREVLESIGEQLRAGAK 68

Query: 72  NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131
                + + A+++G GIGK+ L +W++ W + T      +  AN+E+QL+   W EV+KW
Sbjct: 69  -DRGEVIREAVASGHGIGKSALVSWVIKWALDTEVDTRGVVTANTESQLRTKTWPEVAKW 127

Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT- 190
             +    HWF++   +L  +    E            + I    +S+   + F G HN  
Sbjct: 128 NRLSITAHWFKLTGTALISTDPDHEKN----------WRIDAVPWSDTNTEAFAGLHNEG 177

Query: 191 HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250
             + +  DEAS   D++ +   G  T+ +    W    N  R +G F + F      W+ 
Sbjct: 178 KRILLIFDEASAIADLVWEVAEGALTDADTEIIWAAFGNPTRNSGRFRECFTKFKHRWRH 237

Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
            Q+D+RTV+G +       I+ YG DSD  RI + G FP+      IP +++ EAM R+ 
Sbjct: 238 RQVDSRTVDGTNKTQIAKWIADYGEDSDFVRIRVRGMFPRASDLQLIPTDWVAEAMRRDG 297

Query: 311 IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
           +  L   L+ G DIA  G D  V+ FRRG   + I 
Sbjct: 298 VYGLDDALVCGIDIARGGMDNNVIRFRRGMDAKSIK 333


>gi|290968649|ref|ZP_06560187.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str.
           28L]
 gi|290781302|gb|EFD93892.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str.
           28L]
          Length = 487

 Score =  252 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 98/349 (28%), Positives = 157/349 (44%), Gaps = 25/349 (7%)

Query: 8   DQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCH 67
            +  + EL + L           FV   F W            P  WQ++ ++ V     
Sbjct: 1   MKNEDIELLQALGS--LASDPVAFVYFAFDW---DSEELKGQNPQTWQIKTLKEVGEGL- 54

Query: 68  SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127
                S  T  + A ++G GIGK+ L AW++LW ISTRP    +  AN+ TQL+   WAE
Sbjct: 55  -----SLSTALQHATASGHGIGKSALVAWLILWAISTRPDTRGVVTANTATQLETKTWAE 109

Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187
           +SKW  +   + +F + S ++       E          + + I    +S +R ++F G 
Sbjct: 110 LSKWYHLFRGKKFFTLTSTAIFCRQEGHE----------RTWRIDAIPWSVDRTESFAGL 159

Query: 188 HNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246
           HN  + + +  DEAS   + I +   G  T+ +    W++  N  R  G F+D F+   +
Sbjct: 160 HNQGNRLLLIFDEASAIDNKIWEVAEGALTDKDTEILWLVFGNPTRSTGRFFDCFHKYKK 219

Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306
            W   +ID+RTV+  +    +  I  YG+DSD  ++ +LG+FP      FI    +  A 
Sbjct: 220 SWITQKIDSRTVDISNKTQLQKWIQTYGIDSDFVKVRVLGEFPDTSDTQFISTAIVRTAW 279

Query: 307 SREAIDDLY---APLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
            R  +       AP I+G D A  GGD TV+  R+G   E + ++    
Sbjct: 280 ERRPLRTAEYDFAPCIIGMDPAWTGGDSTVIFLRQGFFSEKLAEYKQND 328


>gi|228911519|ref|ZP_04075310.1| hypothetical protein bthur0013_56490 [Bacillus thuringiensis IBL
           200]
 gi|228848128|gb|EEM92991.1| hypothetical protein bthur0013_56490 [Bacillus thuringiensis IBL
           200]
          Length = 459

 Score =  252 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 83/311 (26%), Positives = 138/311 (44%), Gaps = 30/311 (9%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P  WQ + +  +                K ++ +G+G+GKT L + +++W +  RP   +
Sbjct: 23  PDEWQRKVLMDLA------------QSPKVSVRSGQGVGKTGLESVVVIWFLCCRPNPKV 70

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           IC A ++ QL   LWAE++KWL     ++  +     ++  G                + 
Sbjct: 71  ICTAPTKEQLFTVLWAEIAKWLEGSAVKNLLKWTKTRVYMIGSEER------------WF 118

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
            T RT ++  P+   G H    M    DEASG  D I ++ILG  +      F     N 
Sbjct: 119 ATARTATK--PENMQGFH-EDYMLFVCDEASGIADPIMEAILGTLSGAENKLFLC--GNP 173

Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290
            R +G FYD  N   + +K +++ +           E +  +YG  SDV R+ +LG+FP+
Sbjct: 174 TRTSGVFYDSHNRDRDLYKIHKVSSLDSPRTSKDNIEVLKKKYGEGSDVWRVRVLGEFPK 233

Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
            E + FIP   +E+A S +        L +G D+A  G D+TV+  R GN +  + +   
Sbjct: 234 AEADAFIPLEIVEQAASCKVEPT-GETLDLGVDVARFGDDETVIAPRIGNKVFKLLNHYK 292

Query: 351 KLIQETNQEGC 361
           +   ET     
Sbjct: 293 QDTMETAGHVL 303


>gi|228968731|ref|ZP_04129698.1| hypothetical protein bthur0004_54930 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228790961|gb|EEM38595.1| hypothetical protein bthur0004_54930 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 459

 Score =  252 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 83/311 (26%), Positives = 138/311 (44%), Gaps = 30/311 (9%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P  WQ + +  +                K ++ +G+G+GKT L + +++W +  RP   +
Sbjct: 23  PDEWQRKVLMDLA------------QSPKVSVRSGQGVGKTGLESVVVIWFLCCRPNPKV 70

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           IC A ++ QL   LWAE++KWL     ++  +     ++  G                + 
Sbjct: 71  ICTAPTKEQLFTVLWAEIAKWLEGSAVKNLLKWTKTRVYMIGSEER------------WF 118

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
            T RT ++  P+   G H    M    DEASG  D I ++ILG  +      F     N 
Sbjct: 119 ATARTATK--PENMQGFH-EDYMLFVCDEASGIADPIMEAILGTLSGAENKLFLC--GNP 173

Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290
            R +G FYD  N   + +K +++ +           E +  +YG  SDV R+ +LG+FP+
Sbjct: 174 TRTSGVFYDSHNRDRDLYKIHKVSSLDSPRTSKDNIEVLKKKYGEGSDVWRVRVLGEFPK 233

Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
            E + FIP   +E+A S +        L +G D+A  G D+TV+  R GN +  + +   
Sbjct: 234 AEADAFIPLEIVEQAASCKVEPT-GETLDLGVDVARFGDDETVIAPRIGNKVFKLLNHYK 292

Query: 351 KLIQETNQEGC 361
           +   ET     
Sbjct: 293 QDTMETAGHVL 303


>gi|332981151|ref|YP_004462592.1| hypothetical protein Mahau_0567 [Mahella australiensis 50-1 BON]
 gi|332698829|gb|AEE95770.1| hypothetical protein Mahau_0567 [Mahella australiensis 50-1 BON]
          Length = 461

 Score =  251 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 87/310 (28%), Positives = 140/310 (45%), Gaps = 32/310 (10%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           +P  WQ E ++A+  +             + A+ +G G+GKT L AW +LW + TRP   
Sbjct: 26  EPDDWQAETLQALADN------------PRVAVRSGHGVGKTALEAWALLWFLFTRPYPK 73

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLP-HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
           I C A +  QL + LWAE SKWL   P  + +FE Q   +    +               
Sbjct: 74  IPCTAPTREQLHDILWAEASKWLERAPALKPYFEWQKTRIVQKQY------------PGR 121

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
           +  T RT    +P+   G H  H +    DEASG  D I ++I G  T  +         
Sbjct: 122 WFATARTS--NKPENMAGFHEEH-LLFIIDEASGIADNIFETIEGALTTSDAKLLMC--G 176

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
           N  + +G F+D F      +   ++     + +   + E +  +Y  DSDV R+ +LG+F
Sbjct: 177 NPTKNSGVFHDAFFKDRSLYWTRKVSCLDSQRVTLEYAERLKRKYHEDSDVYRVRVLGEF 236

Query: 289 PQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348
           P+ E + FI  + +E A  R+   D    L +G D+A  G D+TV+  R G  + ++  +
Sbjct: 237 PKAEPDTFISLDIVEAATMRDVEPD--GVLEIGVDVARFGDDETVLAARAGLKLVYLKAY 294

Query: 349 SAKLIQETNQ 358
           + +    T  
Sbjct: 295 TKQDTMTTAG 304


>gi|150390341|ref|YP_001320390.1| hypothetical protein Amet_2579 [Alkaliphilus metalliredigens QYMF]
 gi|149950203|gb|ABR48731.1| conserved hypothetical protein [Alkaliphilus metalliredigens QYMF]
          Length = 469

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 88/324 (27%), Positives = 135/324 (41%), Gaps = 32/324 (9%)

Query: 38  WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97
           W  +     +   P  WQ + +  +  H             K ++ +G+G+GKT L +  
Sbjct: 18  WFAEDMLGFY---PDPWQAKVLMDLAQH------------PKVSVRSGQGVGKTGLESIA 62

Query: 98  MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
           + W + TRP   +I  A +  QL + LWAE+SKWLS              ++ +G+    
Sbjct: 63  ITWYLCTRPFPKVIATAPTRQQLYDVLWAEISKWLSKSKVDKLLRWTKTKIYMNGFEER- 121

Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217
                      +  T RT    RP+   G H    M    DEASG  D I ++ILG  T 
Sbjct: 122 -----------WWATARTA--VRPENMQGFH-EDYMLFVVDEASGVADPIMEAILGTLTG 167

Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277
                      N  + +G FYD  N   + +K +++ +           E +  +YG DS
Sbjct: 168 YENKLLLC--GNPTKTSGTFYDSHNRDRDTYKSHKVSSMDSPRTSKENIEMLKKKYGADS 225

Query: 278 DVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFR 337
           DV R+ +LG FP+ E ++ I     E+A            L +G DIA  G DKT++  R
Sbjct: 226 DVFRVRVLGDFPKGEADSLISLEVTEQAAETVVDISNAYTLNIGADIARFGDDKTIIAPR 285

Query: 338 RGNIIEHIFDWSAKLIQETNQEGC 361
            GN +  +  +S K   ET     
Sbjct: 286 IGNRVLDLQQYSKKDTMETAGNIL 309


>gi|282598712|ref|YP_003358792.1| putative phage terminase B protein [Enterococcus phage phiEf11]
 gi|300860603|ref|ZP_07106690.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
 gi|307292389|ref|ZP_07572245.1| hypothetical protein HMPREF9509_02682 [Enterococcus faecalis
           TX0411]
 gi|258598082|gb|ACV83339.1| putative phage terminase B protein [Enterococcus phage phiEf11]
 gi|300849642|gb|EFK77392.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
 gi|306496518|gb|EFM66079.1| hypothetical protein HMPREF9509_02682 [Enterococcus faecalis
           TX0411]
 gi|315146097|gb|EFT90113.1| conserved hypothetical protein [Enterococcus faecalis TX2141]
          Length = 484

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 82/314 (26%), Positives = 141/314 (44%), Gaps = 32/314 (10%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P  WQ + ++ +                K ++ +G+G+GKT L A  +LW ++ RP   +
Sbjct: 34  PDEWQDKVLDDLAKF------------PKVSVRSGQGVGKTALEAGAILWFLTCRPYAKV 81

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           I  A +  QL + LWAEV+KWL+    +   +     ++  G            DS+ + 
Sbjct: 82  IATAPTMKQLYDVLWAEVAKWLNNSLIKDLLKWTKTKIYMVG------------DSERWF 129

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
            T RT ++  P+   G H  H M +  DEASG  D I ++ILG  +  +         N 
Sbjct: 130 ATARTATK--PENMQGFHEDH-MLIVVDEASGVADPIMEAILGTLSGFDNKLLMC--GNP 184

Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290
             + G FYD  N   + ++ +++ +   +  +    + +I +YG +SDVAR+ I G+FP+
Sbjct: 185 NNIEGVFYDSHNTDRDKYRTHKVSSYDSKRTNKENIQMLIDKYGENSDVARVRIYGEFPK 244

Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPL---IMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
             +++FI    +E A      D     +    +G D+A  G D T+V  R G        
Sbjct: 245 GALDSFISLEIVEFAKDINISDSELKHVREGHIGVDVARFGDDSTIVFPRIGAKALPFEK 304

Query: 348 WSAKLIQETNQEGC 361
           +S +   +T     
Sbjct: 305 YSKQDTMQTTGRVL 318


>gi|228950291|ref|ZP_04112468.1| hypothetical protein bthur0007_63570 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228809453|gb|EEM55897.1| hypothetical protein bthur0007_63570 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 495

 Score =  241 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 85/374 (22%), Positives = 146/374 (39%), Gaps = 60/374 (16%)

Query: 5   ISTDQKLEQELHEMLMHAEC---VLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEA 61
           +S D   E+E+ + ++       V     FV                 +P  WQ E +  
Sbjct: 3   VSNDVTTEEEVLQDIITQLLEIYVDDPVAFVEDILE-----------VEPDPWQKEVLND 51

Query: 62  VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121
           +  H H             ++ +G+G+GKT + +W+ +W +  RP   IIC A ++ QL 
Sbjct: 52  IANHSH------------VSVRSGQGVGKTAMESWICIWFLCCRPYPKIICTAPTKQQLY 99

Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
           + LWAE++KWL+    +   +     ++  G+                       +  RP
Sbjct: 100 DVLWAEIAKWLNSSQVKDLLKWTKTKIYMKGFEDRW--------------FATAKTATRP 145

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           +   G H    M    DEASG  D I ++ILG  +      F     N  + +G F+D  
Sbjct: 146 ENMQGFH-EDYMLFIADEASGIADDIMEAILGTLSGSENKLFMC--GNPTKTSGVFFDSH 202

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301
           N     +K +++ +           E +  +YG  SDV R+ + G+FP+ E + FI    
Sbjct: 203 NKDRALYKSHKVSSADSPRTSKKNIEMLKKKYGEGSDVYRVRVEGEFPRGEADAFISLET 262

Query: 302 IEEAMSREA----------------IDDLYAPLI-MGCDIAGEGGDKTVVVFRRGNIIEH 344
            E A  RE                        ++ +GCD+A  G D+T++  RRG  +  
Sbjct: 263 AEAARMREVYKVEVIENEEEESTVKEIIPDTAVVEIGCDVARFGSDETIIATRRGWKVLP 322

Query: 345 IFDWSAKLIQETNQ 358
           +     +     + 
Sbjct: 323 LQVHHQRDTMYVSG 336


>gi|150016512|ref|YP_001308766.1| hypothetical protein Cbei_1636 [Clostridium beijerinckii NCIMB
           8052]
 gi|149902977|gb|ABR33810.1| conserved hypothetical protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 470

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 85/325 (26%), Positives = 137/325 (42%), Gaps = 33/325 (10%)

Query: 38  WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97
           W  +     H     +WQ E + A+                K ++ +G+G+GKT L + +
Sbjct: 18  WFAEDMMNFHA---DKWQSEVLMALA------------QSPKVSVRSGQGVGKTGLESIV 62

Query: 98  MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
           + W + TRP   +I  A +  QL + LWAE+SKWL+     +  E     ++  G+    
Sbjct: 63  VTWYLCTRPFPKVIATAPTRQQLYDVLWAEISKWLASSKIENLLEWTKTKIYMKGYSER- 121

Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217
                      +  T +T +  RP+   G H    M    DEASG  D I ++ILG  T 
Sbjct: 122 -----------WWATAKTAT--RPENMQGFH-EDYMLFVVDEASGVADPIMEAILGTLTG 167

Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277
                      N  R +G FYD  N   + +K +++ +           E +  +Y   S
Sbjct: 168 YENKLLMC--GNPTRTSGTFYDSHNRDRDLYKTFKVSSLESPRTSKDNIEMLKRKYHEGS 225

Query: 278 DVARIEILGQFPQQEVNNFIPHNYIEEAMSREA-IDDLYAPLIMGCDIAGEGGDKTVVVF 336
           DV R+ + G+FP+ E ++ I   Y E A   +         L +G DIA  G D++V+  
Sbjct: 226 DVWRVRVEGEFPKGESDSLISLEYAETATITKINNIHNNFTLHIGADIARFGNDESVIAP 285

Query: 337 RRGNIIEHIFDWSAKLIQETNQEGC 361
           R GN +  +  ++ K   ET     
Sbjct: 286 RIGNKVFDLLTYTKKDTMETTGNIL 310


>gi|302120432|gb|ADK92426.1| putative phage terminase large subunit [Candidatus Liberibacter
           asiaticus]
          Length = 255

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 194/255 (76%), Positives = 224/255 (87%)

Query: 88  IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
           IGKTTLNAW++LWL+S RPGMSIIC+ANSETQLK TLWAEVSKWLS+LP++HWFEMQSLS
Sbjct: 1   IGKTTLNAWLVLWLMSIRPGMSIICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS 60

Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207
           LHP+ WY+++L  S+GIDSKHY+  CRTYSEERPDTFVG HNT+GMA+ NDEASGTPD+I
Sbjct: 61  LHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVI 120

Query: 208 NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267
           N  ILGF TE N NRFWIMTSN RRL+G FY+IFN PL+DWKR+QIDTRTVEGID  FHE
Sbjct: 121 NLGILGFLTEQNANRFWIMTSNPRRLSGKFYEIFNRPLDDWKRFQIDTRTVEGIDPSFHE 180

Query: 268 GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE 327
           GII+RYGLDSDV R+E+ GQFPQQ++++FIP N IEEA++RE   D YAPLIMGCDIA E
Sbjct: 181 GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE 240

Query: 328 GGDKTVVVFRRGNII 342
           GGD TVVV RRG +I
Sbjct: 241 GGDNTVVVLRRGPVI 255


>gi|332976102|gb|EGK12970.1| hypothetical protein HMPREF9374_1123 [Desmospora sp. 8437]
          Length = 462

 Score =  235 bits (599), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 83/314 (26%), Positives = 134/314 (42%), Gaps = 31/314 (9%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           +P  WQ   ++A+  +             + A+ AG G+GKT   AW +LW + TRP   
Sbjct: 32  EPDEWQDIALQALADNQ------------RVAVRAGHGVGKTATEAWAVLWFLLTRPFPK 79

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLP-HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
           I C A ++ QL + LW E++KWL   P    + E Q   +    +               
Sbjct: 80  IPCTAPTKPQLMDVLWPEIAKWLMNAPELAPYVEWQKTRVVMKQYEERW----------- 128

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
                   +  +P+   G H  H +    DEASG  + I ++I G  T            
Sbjct: 129 ---FATARTSNKPENMAGFHEEH-LLFVIDEASGVDNAIFETIDGALTTAGSKLVM--FG 182

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
           N  R NG FYD F+   + +  Y+I     +     +   +  +YG DSD+ R+ + G+F
Sbjct: 183 NPTRTNGVFYDAFHQDRDLYWTYKISCLDSKMASKDYARNMARKYGEDSDIYRVRVQGEF 242

Query: 289 PQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348
           PQ + ++FIP   +E+A  R+        L +G D+A  G D+TV+  R G +   +  +
Sbjct: 243 PQGDPDSFIPLELVEDARVRDLEWIDEDELHIGVDVARFGSDETVLAARIGPVAFRLDRY 302

Query: 349 SAKL-IQETNQEGC 361
             +    ET     
Sbjct: 303 GGRTPTTETVGRVL 316


>gi|209901239|ref|YP_002290878.1| putative terminase B [Clostridium phage phiCD27]
 gi|199612120|gb|ACH91293.1| putative terminase B [Clostridium phage phiCD27]
          Length = 469

 Score =  235 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 82/316 (25%), Positives = 135/316 (42%), Gaps = 17/316 (5%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
            ++  P  +  + +        S+V  +     K +I +G+G+GKT L +   +W +STR
Sbjct: 11  CYWDNPVWFAEDMLNFKADKWQSDVLMALAQTPKVSIRSGQGVGKTGLESIATVWYLSTR 70

Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
           P   ++  A +  QL + LWAE++KWLS        E     ++  G+            
Sbjct: 71  PFPKVVATAPTRQQLYDVLWAEIAKWLSNSKVEKLLEWTKTKVYMKGFEER--------- 121

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225
              +  T RT    +P+   G H    M    DEASG  D I ++ILG  +         
Sbjct: 122 ---WWATARTA--VKPENMQGFH-EDYMLFVVDEASGVADPIMEAILGTLSGAENKLLLC 175

Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
              N  R +G FYD  N   + +K +++ +           E +  +Y   SD  R+ +L
Sbjct: 176 --GNPTRTSGTFYDSHNRDRDLYKTFKVSSLDSPRTSKDNIEMLKRKYHEGSDPWRVRVL 233

Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHI 345
           G+FP+ E ++ I    +E +  RE        L +G DIA  G D+T++  R G  +  +
Sbjct: 234 GEFPKGESDSLISLEAVETSTIREVNISNDYILNIGADIARYGDDETIIAPRIGGKVFDL 293

Query: 346 FDWSAKLIQETNQEGC 361
             +S K   ET     
Sbjct: 294 LTYSKKDTMETVGNIL 309


>gi|54302246|ref|YP_132239.1| terminase large subunit [Photobacterium profundum SS9]
 gi|46915667|emb|CAG22439.1| hypothetical protein PBPRB0566 [Photobacterium profundum SS9]
          Length = 513

 Score =  235 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 93/331 (28%), Positives = 142/331 (42%), Gaps = 25/331 (7%)

Query: 25  VLSFKNFVMRFFPW------GIKGKPLEHFS------QPHRWQLEFMEAVDVHCHSN--V 70
                 FVM  +PW       I   P    S       P  W  E  + +      N   
Sbjct: 21  YDDPLGFVMYAYPWDTDPDLQIVKLPEPWASKYDSVYGPDAWFCEMCDQLQEVIRKNDFN 80

Query: 71  NNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK 130
                  F  +IS+G GIGK+  ++W++ +++STRP    +  +N+  QL+   W E+ K
Sbjct: 81  GVDPVDAFLYSISSGHGIGKSCASSWLIHFVMSTRPNSKGVVTSNTSEQLRTKTWGELGK 140

Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
           W   L ++HWF   +   + + ++ +         ++ + +  +T  EE  ++F G H  
Sbjct: 141 WTKKLINKHWFVYNNGKGNMNFYHKDY--------AETWRVDAQTCREENSESFAGLHCA 192

Query: 191 HGM-AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
                   DEAS  PD I +   G  T+     FW +  N  R +G F + +    + W 
Sbjct: 193 SSTPWYLFDEASAVPDKIWEVAEGGLTDG--EPFWFVFGNPTRNSGRFRECWRRFRQRWN 250

Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309
           R QID+ TV+  +        S YG DSD  R+ + G FP    N  I    +E AMSR 
Sbjct: 251 RKQIDSSTVQVTNKKKISEWESDYGEDSDFYRVRVKGVFPSASSNQKISGALLEAAMSRT 310

Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGN 340
           A     +P +M  D+A  GGD  V  FR G 
Sbjct: 311 AHVIPGSPRVMSLDVARGGGDNCVFRFRHGL 341


>gi|261208032|ref|ZP_05922709.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289567088|ref|ZP_06447483.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|260077749|gb|EEW65463.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289161103|gb|EFD09008.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
          Length = 471

 Score =  232 bits (590), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 81/311 (26%), Positives = 140/311 (45%), Gaps = 32/311 (10%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P  WQ   +  +                K ++ +G+G+GKT L A  +LW ++ RP   +
Sbjct: 34  PDEWQENVLNDLAEFS------------KVSVRSGQGVGKTALEAGAILWFLTCRPYAKV 81

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           I  A +  QL + LWAEV+KWL+    ++  +     ++  G            DS+ + 
Sbjct: 82  IATAPTMKQLYDVLWAEVAKWLNDSLIKNLLKWTKTKIYMVG------------DSERWF 129

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
            T RT ++  P+   G H  H M +  DEASG  D I ++ILG  +  +         N 
Sbjct: 130 ATARTATK--PENMQGFHEDH-MLIVVDEASGVSDPIMEAILGTLSGFDNKLLMC--GNP 184

Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290
             + G FYD  N   + ++ +++ +   +  +    E I+ +YG +SDVAR+ I G+FP+
Sbjct: 185 NNIEGVFYDSHNSDRDKYRVHKVSSYDSKRTNKDNIEMILKKYGKESDVARVRIFGEFPK 244

Query: 291 QEVNNFIPHNYIEEAMSREAI---DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
             +++FI    +E A  ++      +      +G D+A  G D T++  R          
Sbjct: 245 GALDSFISLETVELATEKQISDSLVNKTTVAHIGVDVARYGDDSTILFPRIATRALEYEK 304

Query: 348 WSAKLIQETNQ 358
           +S +   ET  
Sbjct: 305 YSKRSTMETTG 315


>gi|257883493|ref|ZP_05663146.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|294614775|ref|ZP_06694675.1| hypothetical protein EfmE1636_0865 [Enterococcus faecium E1636]
 gi|294622490|ref|ZP_06701512.1| conserved hypothetical protein [Enterococcus faecium U0317]
 gi|257819151|gb|EEV46479.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|291592387|gb|EFF23996.1| hypothetical protein EfmE1636_0865 [Enterococcus faecium E1636]
 gi|291598037|gb|EFF29147.1| conserved hypothetical protein [Enterococcus faecium U0317]
          Length = 471

 Score =  232 bits (590), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 81/311 (26%), Positives = 140/311 (45%), Gaps = 32/311 (10%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P  WQ   +  +                K ++ +G+G+GKT L A  +LW ++ RP   +
Sbjct: 34  PDEWQENVLNDLAEFS------------KVSVRSGQGVGKTALEAGAILWFLTCRPYAKV 81

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           I  A +  QL + LWAEV+KWL+    ++  +     ++  G            DS+ + 
Sbjct: 82  IATAPTMKQLYDVLWAEVAKWLNDSLIKNLLKWTKTKIYMVG------------DSERWF 129

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
            T RT ++  P+   G H  H M +  DEASG  D I ++ILG  +  +         N 
Sbjct: 130 ATARTATK--PENMQGFHEDH-MLIVVDEASGVSDPIMEAILGTLSGFDNKLLMC--GNP 184

Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290
             + G FYD  N   + ++ +++ +   +  +    E I+ +YG +SDVAR+ I G+FP+
Sbjct: 185 NNIEGVFYDSHNSDRDKYRVHKVSSYDSKRTNKDNIEMILKKYGKESDVARVRIFGEFPK 244

Query: 291 QEVNNFIPHNYIEEAMSREAI---DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
             +++FI    +E A  ++      +      +G D+A  G D T++  R          
Sbjct: 245 GALDSFISLETVELATEKQISDSLVNKTTVAHIGVDVARYGDDSTILFPRIATRALEYEK 304

Query: 348 WSAKLIQETNQ 358
           +S +   ET  
Sbjct: 305 YSKRSTMETTG 315


>gi|153810665|ref|ZP_01963333.1| hypothetical protein RUMOBE_01049 [Ruminococcus obeum ATCC 29174]
 gi|149833061|gb|EDM88143.1| hypothetical protein RUMOBE_01049 [Ruminococcus obeum ATCC 29174]
          Length = 469

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 88/321 (27%), Positives = 145/321 (45%), Gaps = 17/321 (5%)

Query: 45  LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
           L + + P  +  + ++A        +  S       ++ +G GIGK+ + AW ++W + T
Sbjct: 8   LYYANHPVEFVQDILKADPDPEQKKILRSLVENQMTSVRSGHGIGKSAVEAWSVIWFMCT 67

Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
            P   I C A ++ QL + LWAE+SKW           + S  +          +  M  
Sbjct: 68  HPYPKIPCTAPTQHQLFDILWAEISKWKRNNK-----TLDSELIWTK------EKLYMKG 116

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
            ++ +    RT S   PD   G H  H M    DEASG  D I + +LG  +        
Sbjct: 117 HAEEWFAVARTAS--TPDALQGFHAEH-MLYIIDEASGVEDKIFEPVLGALSTPGAKLLM 173

Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
               N  +L+G+FYD  N   E +  + ID R    +   F + II+ YG DSDV R+ +
Sbjct: 174 C--GNPTQLSGFFYDSHNKNREQYSTFHIDGRNSTRVSQEFVQTIINMYGEDSDVFRVRV 231

Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI-MGCDIAGEGGDKTVVVFRRGNIIE 343
            G FP  E + +IP   +E++++ E     +  +I +GCD+A  G DKTV+ +R    ++
Sbjct: 232 AGDFPLAEDDIYIPLPLVEKSIATEYFPRRHPQIIHIGCDVARFGTDKTVIGYRTDEKVQ 291

Query: 344 HIFDWSAKLIQETNQEGCPVG 364
                  +   +T  +   +G
Sbjct: 292 FFKKRVGQDTMKTADDIVSLG 312


>gi|255282256|ref|ZP_05346811.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
 gi|255267204|gb|EET60409.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
          Length = 506

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 79/355 (22%), Positives = 143/355 (40%), Gaps = 38/355 (10%)

Query: 12  EQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFS----QPHRWQLEFMEAVDVHCH 67
           E+   +  +    +   + F     P   K   L        +P  WQ + +  +     
Sbjct: 8   EEMQMDKELPPNRIRR-RKFFRERIPRYRKDPVLYAREVLQFEPDEWQRDALMDLAEES- 65

Query: 68  SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127
                      + A+ +G+G+GKT + A  +LW +S      ++  A +  QL + LW+E
Sbjct: 66  -----------RVAVKSGQGVGKTGIEAVAVLWFLSCFRYARVVATAPTRQQLHDVLWSE 114

Query: 128 VSKWLSMLP-HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
           ++KW    P  +         ++  G+             K +    RT ++  P+   G
Sbjct: 115 IAKWQERSPLLKAILRWTKTYVYVKGYE------------KRWFAVARTATK--PENMQG 160

Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246
            H  + M    DEASG  D I +++LG  +  N         N  R  G FYD F     
Sbjct: 161 FHEDN-MLFIVDEASGVADPIMEAVLGTLSGGNNKLLMC--GNPTRTTGTFYDAFTKDRS 217

Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306
            +  + + +      D    + +I +YG DS++ R+ + G FP+Q+ + FI    I++  
Sbjct: 218 IFACHTVSSLDSSRTDKNNIDALIRKYGEDSNLVRVRVKGLFPKQDDDVFISQELIDQCT 277

Query: 307 SREAIDDLY---APLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQ 358
           SR+         A +I+G D+A  G D+TV+       I+ + +   + +  T  
Sbjct: 278 SRQYELPESRGMAQVILGVDVARYGNDETVIYRNFKGRIKMVRNRRGQNLMATAG 332


>gi|319956916|ref|YP_004168179.1| hypothetical protein Nitsa_1177 [Nitratifractor salsuginis DSM
           16511]
 gi|319419320|gb|ADV46430.1| hypothetical protein Nitsa_1177 [Nitratifractor salsuginis DSM
           16511]
          Length = 462

 Score =  224 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 86/303 (28%), Positives = 138/303 (45%), Gaps = 28/303 (9%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P + Q++ + A+D               K +I +G G GKTTL AW++LW    R    I
Sbjct: 28  PTKQQMKAIRAIDQGKK-----------KISIRSGHGTGKTTLLAWIVLWWGLGREDAKI 76

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
              A +  QL + L  E+ KW   +P ++  E++             ++      +    
Sbjct: 77  PMTAPTGHQLYDLLMPEIRKWREKMPVQYQNEVE-------------VKTEKIDFANGNF 123

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
              RT  +++P+   G H T+ +A   DEASG P +I +   G  T    +   IM +N 
Sbjct: 124 AVPRTARKDQPEALQGFHATN-LAFIIDEASGIPQVIFEVAEGAMT--GESTLVIMAANP 180

Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290
            R  G+FYD  +     W+ +Q +    E +   + E    +YG DSDV R+ I G+FP+
Sbjct: 181 TRTEGYFYDSHHKNRWQWECFQFNAEESENVSKEWIEEKKRQYGEDSDVYRVRIKGEFPR 240

Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
           Q  N       +++A +RE +DD  A  + G D+A  G DK+V+  R+G     I   S 
Sbjct: 241 QSSNAVFSLQEVDDATTREIVDDSGAE-VWGLDVADFGDDKSVLAKRKGKHFHEITARSG 299

Query: 351 KLI 353
             +
Sbjct: 300 LTL 302


>gi|323486060|ref|ZP_08091391.1| hypothetical protein HMPREF9474_03142 [Clostridium symbiosum
           WAL-14163]
 gi|323400627|gb|EGA92994.1| hypothetical protein HMPREF9474_03142 [Clostridium symbiosum
           WAL-14163]
          Length = 476

 Score =  222 bits (564), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 82/312 (26%), Positives = 137/312 (43%), Gaps = 31/312 (9%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           +P  WQ + +  +                K AI +G+G+GKT + A  +LW +   P   
Sbjct: 35  EPDDWQKQALMDLAE------------SPKVAIKSGQGVGKTGMEAVALLWFLCCYPYPR 82

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLP-HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
           I+  A ++ QL + LW+EVSKW+S  P      +     ++  G              K 
Sbjct: 83  IVATAPTKQQLHDVLWSEVSKWMSKSPLLSDILKWTKTYIYMVGNE------------KR 130

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
           +    RT ++  P+   G H  + M    DEASG  D I ++ILG  +  N         
Sbjct: 131 WFAVARTATK--PENMQGFHEDN-MLFIVDEASGVADPIMEAILGTLSGANNKLLMC--G 185

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
           N  R +G FYD FN+    ++ + + +   +  +    E +I +YG DS+V  + + G+F
Sbjct: 186 NPTRTSGTFYDAFNVDRSIYRCHTVSSADSKRTNKQNIESLIRKYGKDSNVVLVRVFGEF 245

Query: 289 PQQEVNNFIPHNYIEEAMSREAIDD-LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
           P+QE + FI  + +E     +  DD     +  G D+A  G D+TV+    G  I     
Sbjct: 246 PKQEDDVFIALSIVEHCCMLDLPDDVPIKRISFGVDVARYGSDETVIAKNVGGRITLPVS 305

Query: 348 WSAKLIQETNQE 359
           +  + +  T  +
Sbjct: 306 FRGQSLMTTVGK 317


>gi|160940775|ref|ZP_02088117.1| hypothetical protein CLOBOL_05669 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436295|gb|EDP14062.1| hypothetical protein CLOBOL_05669 [Clostridium bolteae ATCC
           BAA-613]
          Length = 484

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 125/296 (42%), Gaps = 19/296 (6%)

Query: 42  GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101
              L +   P  +  + + A       ++  S       ++ +G GIGK+ + AW ++W 
Sbjct: 5   DAVLFYADNPIYFVEDVIRAKPDEKQRDILRSLRDYPMTSVRSGHGIGKSAVEAWSVIWY 64

Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP-HRHWFEMQSLSLHPSGWYAELLEQ 160
           + TRP   I C A +E QL + LWAE+SKW+   P  R         L+  G   E    
Sbjct: 65  MCTRPFPKIPCTAPTEHQLMDVLWAEISKWMRNNPALRDDLIWTKEKLYMQGHPEEW--- 121

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220
                           +   P+   G H  H +    DEASG  D + + +LG  T  + 
Sbjct: 122 -----------FAVPRTATNPEALQGFHAEH-VLYIIDEASGVSDKVFEPVLGAMTGEDA 169

Query: 221 NRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280
                   N  RL G+FYD  +   E +    +D R  + +   F + II  +G DSDV 
Sbjct: 170 KLLM--MGNPTRLAGFFYDSHHRNREQYSAIHVDGRDSQHVSRTFVQKIIDMFGEDSDVF 227

Query: 281 RIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
           R+ + GQFP+   ++ I   + EEA + +        + +G D+A  G D + +  
Sbjct: 228 RVRVAGQFPKSTPDSLIAMEWCEEAANLQV-YAPGGQIDIGVDVARYGDDSSALYP 282


>gi|289578588|ref|YP_003477215.1| hypothetical protein Thit_1395 [Thermoanaerobacter italicus Ab9]
 gi|289528301|gb|ADD02653.1| conserved hypothetical protein [Thermoanaerobacter italicus Ab9]
          Length = 460

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 78/352 (22%), Positives = 132/352 (37%), Gaps = 62/352 (17%)

Query: 22  AECVLSFKNFVMRFF---PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78
                    FV       PW                Q E ++AV  H             
Sbjct: 13  DRARNDPVFFVRCVLKGDPWEK--------------QEEILKAVRDH------------K 46

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           + A+ A  G+GKT + AW+ LW + T     +I  A +  Q++N LW E+    +     
Sbjct: 47  RVAVRACHGVGKTKVAAWVALWFLYTHHNSKVITTAPTWHQVENLLWREIHAAHAASRI- 105

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                            ++L+  + +  +         S ++P+ F G H  H   +  D
Sbjct: 106 -------------PLGGKVLQTQIELGEQW---FALGLSTDKPERFQGFHAEHI-LLIVD 148

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
           EASG       +  GF T +       +  N  +L+G FY+ F  P   + +  I     
Sbjct: 149 EASGVEQYTFDAAEGFLTSIGAKLL--LIGNPTQLSGEFYNAFRSP--LYHKIHISAFDS 204

Query: 259 EG-----------IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
                        +   + E    ++G DS +    +LG+FP+Q  +  IP  +IE A  
Sbjct: 205 PNLKAGKIVRPYLVTPEWVEDKRLKWGEDSPLWYSRVLGEFPEQGNDTLIPLAWIEAAQQ 264

Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
           R  + +   P+ +G D+A  G D TV++ RRG+  E ++    +   E   +
Sbjct: 265 RWHMTEAGEPVEIGADVARYGTDTTVIMLRRGDKAEIVYQLRGQDTMEVTGK 316


>gi|308069786|ref|YP_003871391.1| hypothetical protein PPE_03030 [Paenibacillus polymyxa E681]
 gi|305859065|gb|ADM70853.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 452

 Score =  220 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 76/309 (24%), Positives = 121/309 (39%), Gaps = 30/309 (9%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P  WQ   +  +  +             + ++ +G+G+GKT L A   LW +S  P   +
Sbjct: 6   PDDWQASTLMDLANN------------PRVSVRSGQGVGKTGLEAATALWFLSCFPYPKV 53

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLP-HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           IC A +  QL + LWAE++KW S  P  +   +     ++   +               +
Sbjct: 54  ICTAPTRQQLHDVLWAEINKWQSKSPVLKRILKWTKTKIYMKNYEER------------W 101

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
             T RT ++  P+   G H    M    DEASG  D I ++ILG  +            N
Sbjct: 102 FATARTATK--PENMQGLH-EDYMLFIVDEASGVADPIMEAILGTLSGEFNKILMC--GN 156

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
             + +G FYD  N    D+K  ++               +  +YG  SDV R+ + G+FP
Sbjct: 157 PTKTSGVFYDSHNKDRADYKTRKVSCLDSPRTSKDNIAMLKRKYGEGSDVWRVRVEGEFP 216

Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS 349
           +   + FI     E A     ++     L +G D+A  G D+T +    G  I       
Sbjct: 217 RGGSDTFISLEVAEFAAKEVKLEPTGDMLTIGVDVARFGDDETSMFAGIGPRIVGEHHHF 276

Query: 350 AKLIQETNQ 358
            K    T  
Sbjct: 277 KKGTMVTAG 285


>gi|266623290|ref|ZP_06116225.1| putative terminase B protein [Clostridium hathewayi DSM 13479]
 gi|288864932|gb|EFC97230.1| putative terminase B protein [Clostridium hathewayi DSM 13479]
          Length = 484

 Score =  219 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 132/296 (44%), Gaps = 19/296 (6%)

Query: 42  GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101
              L +  +P  +  + +         ++  S       ++ +G G+GK+ + +W ++W 
Sbjct: 5   DAVLFYADEPIYFVEDIIRVTPDQKQRDILRSLRDYPMTSVRSGHGVGKSAVESWSVIWF 64

Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP-HRHWFEMQSLSLHPSGWYAELLEQ 160
           + TRP   I C A ++ QL + LWAE+SKWL   P  ++        ++ +G+  E    
Sbjct: 65  LCTRPFPKIPCTAPTQHQLYDILWAEISKWLRNNPELKNDIIWTQQRVYMNGYPEEW--- 121

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220
                           +   P+   G H  H +    DEASG  D + + +LG  T  + 
Sbjct: 122 -----------FAVPRTATNPEALQGFHAEH-VLYIIDEASGVSDKVFEPVLGAMTGEDA 169

Query: 221 NRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280
                   N  RL+G+F+D  +    ++    ID R  + ++  F + II+ +G+DSDV 
Sbjct: 170 KLLM--MGNPTRLSGFFFDSHHKSRSEYSAMHIDGRDSQHVNQKFVQKIINMFGMDSDVF 227

Query: 281 RIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
           R+ + GQFP+   ++ I  ++ E A   +    +   + +G D+A  G D + +  
Sbjct: 228 RVRVAGQFPKSTPDSLIMMDWCEAATQLKPE-TVRNRVDIGVDVARYGDDSSALYP 282


>gi|253578914|ref|ZP_04856185.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849857|gb|EES77816.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 473

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 76/313 (24%), Positives = 136/313 (43%), Gaps = 33/313 (10%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           +P  WQ +    +  +             K +I +G+G+GKT L A + LW ++  P   
Sbjct: 17  EPDEWQAQAARDLAAN------------PKVSIKSGQGVGKTGLEAAVFLWFVTCFPHPR 64

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLP-HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
           I+  A ++ QL + LW+E+SKW+S         +     ++  G            + K 
Sbjct: 65  IVATAPTKQQLHDVLWSEISKWMSKSELLSILLKWTKTYVYMVG------------EEKR 112

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
           +    RT ++  P+   G H  + M    DEASG  D I ++ILG  +  N         
Sbjct: 113 WFGVARTATK--PENMQGFHEDN-MLFIVDEASGVADPIMEAILGTLSGANNKLLLC--G 167

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
           N  + +G FYD        +K + + +      +    + ++ +YG DS+V R+ + G+F
Sbjct: 168 NPTKTSGTFYDSHTRDRALYKCHTVSSMDSTRTNKENIDSLVRKYGWDSNVVRVRVRGEF 227

Query: 289 PQQEVNNFIPHNYIEEAMSREAIDDLYAP---LIMGCDIAGEGGDKTVVVFRRGNIIEHI 345
           P QE + FIP + IE+  S+    D       + +G D+A  G D+T++        + +
Sbjct: 228 PNQEDDVFIPLSLIEQCSSKLLELDDADGMQFVSLGVDVARFGDDETIIYRNYHGHCKIV 287

Query: 346 FDWSAKLIQETNQ 358
            +   + +  T  
Sbjct: 288 RNRRGQNLMATVG 300


>gi|167767949|ref|ZP_02440002.1| hypothetical protein CLOSS21_02492 [Clostridium sp. SS2/1]
 gi|167710278|gb|EDS20857.1| hypothetical protein CLOSS21_02492 [Clostridium sp. SS2/1]
 gi|291560988|emb|CBL39788.1| hypothetical protein CL2_30180 [butyrate-producing bacterium SSC/2]
          Length = 473

 Score =  212 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 80/343 (23%), Positives = 132/343 (38%), Gaps = 36/343 (10%)

Query: 20  MHAECVLSFKNFVMRFFPWGIKGKPLEH---FSQPHRWQLEFMEAVDVHCHSNVNNSNPT 76
           M    +  F   V     W            F  P  WQ E   A+  +           
Sbjct: 1   MDDRVLHDFL--VESIPLWQQNPVQFFEEVLFFYPDEWQKEAAFALRDNS---------- 48

Query: 77  IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136
             K  I +G+G+GKT   A  +LW +S      ++  A +  QL + LWAEVSKW S  P
Sbjct: 49  --KVTIKSGQGVGKTGFEAATLLWFLSCFENARVVATAPTLHQLNDVLWAEVSKWQSKSP 106

Query: 137 -HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
             +   +     +                  + +    RT +   P+   G H  + M  
Sbjct: 107 LLKEILQWTKTKISM------------IGSKERWYAVARTAT--TPENMQGFHEDN-MLF 151

Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255
             DEASG  D I ++ILG  T  N         N  + +G FYD      + +    +++
Sbjct: 152 IVDEASGVADPIMEAILGTLTGSNNKLLLC--GNPTKASGTFYDSHTSDRKLYYCITVNS 209

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY 315
              +  +    + +I +YG +S+V R+ + G FP+Q+ + ++P   +E ++  E      
Sbjct: 210 AESKRTNKDNIDSLIRKYGEESNVVRVRVKGLFPKQDDDVYMPLEMLEASIILE-EIPPA 268

Query: 316 APLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQ 358
               +G D+A  G D TV+     N I        + + +T  
Sbjct: 269 DICTLGVDVARFGDDDTVIARNMNNKITLEKIRHGQDLMKTVG 311


>gi|332980681|ref|YP_004462122.1| hypothetical protein Mahau_0077 [Mahella australiensis 50-1 BON]
 gi|332698359|gb|AEE95300.1| hypothetical protein Mahau_0077 [Mahella australiensis 50-1 BON]
          Length = 486

 Score =  205 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 72/370 (19%), Positives = 123/370 (33%), Gaps = 75/370 (20%)

Query: 20  MHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRW--QLEFMEAVDVHCHSNVNNSNPTI 77
           +  +       FV+                    W  Q++ + AV  +            
Sbjct: 10  LAQKMQNDPVWFVI-------------EILGTRPWKKQIDIISAVRDN------------ 44

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
            + A+ +  G GK+ +   ++LW + +     ++  A +  Q++  +W EV         
Sbjct: 45  PRTAVRSCHGAGKSFIAGQVILWFLYSFYPSIVLSTAPTWRQVEKLIWKEVRASYRRSKV 104

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
                +            E                    S   PD F G H  +   V  
Sbjct: 105 PLGGNLLPKRPEIQIIQDEWY--------------AVGLSTNEPDRFQGFHEENI-LVVV 149

Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257
           DEA+G P+ I ++I G  T  +      +  N   + G FY+ F  P   W+   I   T
Sbjct: 150 DEAAGVPEEIFEAIEGVLTSEHARLL--LLGNPTSVGGTFYNAFRTP--GWENISISAFT 205

Query: 258 VEGID-----------------------------SGFHEGIISRYGLDSDVARIEILGQF 288
                                               +      R+G +S   +  +LGQF
Sbjct: 206 TPNFTAFGITEDDIINKTWESKITNSLPNPKLITPAWVADKYRRWGPNSPAYQARVLGQF 265

Query: 289 PQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348
           P +  +  IP  +IE AM+R        P+ +G D+A  G DKTV+  RRG  +  +  +
Sbjct: 266 PSEGEDTLIPLAWIEAAMARWEDTPEGEPIEIGVDVARFGSDKTVIAARRGQKVLPLNVY 325

Query: 349 SAKLIQETNQ 358
           + +   ET  
Sbjct: 326 AKQDTMETVG 335


>gi|83593922|ref|YP_427674.1| hypothetical protein Rru_A2590 [Rhodospirillum rubrum ATCC 11170]
 gi|83576836|gb|ABC23387.1| hypothetical protein Rru_A2590 [Rhodospirillum rubrum ATCC 11170]
          Length = 505

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 67/330 (20%), Positives = 119/330 (36%), Gaps = 34/330 (10%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P   Q   + A+            P   K  + AG G+GKTT  A  + W +        
Sbjct: 21  PTAQQAGLLSAIA-----------PAGAKVTVRAGHGVGKTTATAAAIWWHLECFDYSKT 69

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE-QSMGIDSKHY 169
            C A + +QL+  LW+E+++       R        +L     +A      +     + +
Sbjct: 70  PCTAPTASQLEQILWSELARLRRRADARAQGTGLPAALRLEALFAVSGRAIADRGTPREW 129

Query: 170 TITCRTYSEERPDTFVGPHNTHGMA------------------VFNDEASGTPDIINKSI 211
            +  RT   ++PD   G H +                         +EASG PD + +  
Sbjct: 130 FVVARTARRDQPDALQGFHASDIDLEAGAGPRLSAKSGGAALMFVIEEASGVPDAVFEVA 189

Query: 212 LGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271
            G  +        +   N  R  G+F          +   ++       +D G+  G++ 
Sbjct: 190 EGALSSPGARLLMV--GNPTRNTGFFARSHKRDRASFTALRLRCADSPLVDPGYRAGLVR 247

Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGG 329
           +YG +S+V R+   G FP+Q+ +  I     E A++R             +G D+A  G 
Sbjct: 248 KYGAESNVVRVRADGAFPRQDDDVLIALETAEAALARPLPARMATEDERRLGVDVARFGD 307

Query: 330 DKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
           D+TV + R G ++  I   + +        
Sbjct: 308 DRTVFLLRIGPVVGAIEVTAGRDTMAVAGR 337


>gi|48697461|ref|YP_024846.1| Pas60 [Actinoplanes phage phiAsp2]
 gi|47679679|gb|AAT36808.1| Pas60 [Actinoplanes phage phiAsp2]
          Length = 492

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 71/329 (21%), Positives = 120/329 (36%), Gaps = 32/329 (9%)

Query: 49  SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-- 106
             P  W  + ++         + ++ P   + A+    G+GK+   A ++ W  +TR   
Sbjct: 21  DSPTAWAADCLDVRLAGYQGEILDAVPRERRVAVRGPHGLGKSFSGAILVNWFATTRDLM 80

Query: 107 --GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
                II  A++   L+  LW E+ KW           +  ++L  + +        + +
Sbjct: 81  GKDWKIITTASAWRHLEVYLWPEIHKWAGR--------INFVALGRAPYNPRTELLDLRL 132

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN----P 220
              H   T       +P+   G H    +    DEA   P     SI G F+        
Sbjct: 133 KLTHGAATAVAS--NQPERIEGAHAEE-LLYLLDEAKIVPPATWDSIEGAFSNAGVDVAD 189

Query: 221 NRFWIMTSNTRRLNGWFYDIFNIP--LEDWKRYQIDTRT---VEGIDSGFHEGIISRYGL 275
           N +    S     +G FYDI       EDW    +          I   + +   S++G 
Sbjct: 190 NAYAFAMSTPGAPSGRFYDIHRRAPGYEDWWTRHVTLEEAIASGRISRAWADQRRSQWGS 249

Query: 276 DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD------LYAPLIMGCDIAGEGG 329
           DS V    +LG+F   + ++ IP  ++E A+ R    D         PL  G D+   GG
Sbjct: 250 DSAVFHNRVLGEFHASDEDSVIPLAWLEAAIERWHEWDRQGRPSPGGPLWTGVDVGR-GG 308

Query: 330 DKTVVVFRRGNIIEHIFDWSAKLIQETNQ 358
           D+TV+  R G  +  +     +    T  
Sbjct: 309 DETVLAARDGWAVT-LETNRRRDTMATVG 336


>gi|322656964|gb|EFY53248.1| DNA packaging protein [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
          Length = 411

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 59/273 (21%), Positives = 115/273 (42%), Gaps = 21/273 (7%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  +++G G GK++L A ++L  +   P   +I +AN   Q+K  ++  V ++ +    R
Sbjct: 56  RTTVTSGHGTGKSSLTAMLLLIFMILFPDARVIIVANKIGQVKTGVFKYVKQYWANAVKR 115

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
           H +      L  + +Y    +         + + C+ Y     +   G H  H + +  D
Sbjct: 116 HGWLQTYFVLSDTMFYERSRK-------GIWEVLCKGYRLGNEEALAGEHAAH-LLLILD 167

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-------IPLEDWKRY 251
           EASG  D     + G  TE +     +M S   R +G+FYD  +        P   W   
Sbjct: 168 EASGISDKAIGVMTGALTEEDNR--MLMLSQPTRPSGYFYDSHHSQAKTPDNPKGIWTAI 225

Query: 252 QIDTRTVEGIDSGFH-EGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
            +++     +   F  + ++   G DS    +++LGQFP++     +  +  + A  R+ 
Sbjct: 226 VLNSEESPFVTPQFIKQKLLEYGGRDSIEYMVKVLGQFPREINGYLLGRDECDRAARRKV 285

Query: 311 IDDLYAPLIMGCDIAGEGGDKTV--VVFRRGNI 341
           + +     +   D+ G G DK+V  +    G+ 
Sbjct: 286 LLEKNWGWVATADV-GNGRDKSVLNICKVSGHR 317


>gi|168467778|ref|ZP_02701615.1| DNA pacase B subunit [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|195629119|gb|EDX48493.1| DNA pacase B subunit [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
          Length = 494

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 61/328 (18%), Positives = 117/328 (35%), Gaps = 36/328 (10%)

Query: 20  MHAECVLSFKN---FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPT 76
           M   C+   +         + W I    +     P  WQ +    +        +     
Sbjct: 1   MARSCITDPRWRELVAQYRYDW-IAAADVMFGKTPT-WQQD---QIIESVQEPGS----- 50

Query: 77  IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136
             K ++S+G G GK+ + + M++  I   PG   I +AN   Q+   ++  +        
Sbjct: 51  --KTSVSSGHGTGKSDMTSIMIMLFIIMFPGARAIIVANKIQQVMTGIFKYLKI------ 102

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGI-DSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
             +W    S     + ++         I     +T+  + +     +   G H  H +  
Sbjct: 103 --NWSTATSRFPWLAEYFVLTDTSFYEITSKGVWTVVPKGFRLGNEEALAGEHADH-LLY 159

Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED-------W 248
             DEASG  D     + G  T  +      + S   R +G+FYD  +   +        +
Sbjct: 160 IIDEASGVSDKAFGIMTGALTGKDNRIL--LLSQPTRPSGYFYDTHHKLAKRPGNPNGIY 217

Query: 249 KRYQIDTRTVEGIDSGFHE-GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
               +++     +   F +  +    G DS +  I++ G FP+ +    +  + +E A  
Sbjct: 218 TAITLNSEESPLVTPEFIKMKLAEYGGRDSPMYLIKVRGLFPKTQDGFLLGRDEVERASR 277

Query: 308 REAIDDLYAPLIMGCDIA-GEGGDKTVV 334
           R+         I   D+A G G DK+V+
Sbjct: 278 RKVKIAKGWGWIACVDVAGGTGRDKSVI 305


>gi|56266643|gb|AAV84926.1| DNA pacase B subunit [Enterobacteria phage phiW39]
          Length = 494

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 60/328 (18%), Positives = 118/328 (35%), Gaps = 36/328 (10%)

Query: 20  MHAECVLSFKN---FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPT 76
           M   CV   +      +  + W      L   +    WQ + +          + +    
Sbjct: 1   MARSCVTDPRWRELVALYRYDWIAAADVLFGKTP--TWQQDLI----------IESVQEQ 48

Query: 77  IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136
             K ++S+G G GK+ + + M++  I   PG   I +AN   Q+   ++  +        
Sbjct: 49  GSKTSVSSGHGTGKSDMTSIMIMLFIIMYPGARAIIVANKIQQVMTGIFKYIKI------ 102

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGI-DSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
             +W    S     + ++         I     +T+  + +     +   G H  H +  
Sbjct: 103 --NWATATSRFPWLADYFVLTETAFYEITGKGVWTVVPKGFRLGSEEALAGEHADH-LLY 159

Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED-------W 248
             DEASG  D     I G  T  +      + S   R +G+FYD  +   +        +
Sbjct: 160 IIDEASGVSDRAFGIITGALTGQDNRIL--LLSQPTRPSGYFYDTHHKLAKRPGNPDGVY 217

Query: 249 KRYQIDTRTVEGIDSGFHE-GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
               +++     +   F +  +    G D+ +  I++ G FP+ +    +  + +E A  
Sbjct: 218 TAITLNSEESPLVTPAFIKMKLAEYGGRDNPMYMIKVRGLFPKSQDGFLLGRDEVERATR 277

Query: 308 REAIDDLYAPLIMGCDIA-GEGGDKTVV 334
           R+         +   D+A G G DK+V+
Sbjct: 278 RKVKIAKGWGWLACVDVAGGTGRDKSVI 305


>gi|324111095|gb|EGC05081.1| terminase B protein [Escherichia fergusonii B253]
          Length = 494

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 59/328 (17%), Positives = 117/328 (35%), Gaps = 36/328 (10%)

Query: 20  MHAECVLSFKN---FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPT 76
           M   CV   +      +  + W      L   +    WQ + +          + +    
Sbjct: 1   MARSCVTDPRWRELVALYRYDWIAAADVLFGKTP--TWQQDLI----------IESVQEQ 48

Query: 77  IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136
             K ++S+G G GK+ + + M++  I   PG   I +AN   Q+   ++  +        
Sbjct: 49  GSKTSVSSGHGTGKSDMTSIMIMLFIIMYPGARAIIVANKIQQVMTGIFKYIKI------ 102

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMG-IDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
             +W    S     + ++               +T+  + +     +   G H  H +  
Sbjct: 103 --NWATATSRFPWLADYFVLTETAFYEVTGKGVWTVVPKGFRLGSEEALAGEHADH-LLY 159

Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED-------W 248
             DEASG  D     I G  T  +      + S   R +G+FYD  +   +        +
Sbjct: 160 IIDEASGVSDRAFGIITGALTGQDNRIL--LLSQPTRPSGYFYDTHHKLAKRPGNPDGVY 217

Query: 249 KRYQIDTRTVEGIDSGFHE-GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
               +++     +   F +  +    G D+ +  I++ G FP+ +    +  + +E A  
Sbjct: 218 TAITLNSEESPLVTPAFIKMKLAEYGGRDNPMYMIKVRGLFPKSQDGFLLGRDEVERATR 277

Query: 308 REAIDDLYAPLIMGCDIA-GEGGDKTVV 334
           R+         +   D+A G G DK+V+
Sbjct: 278 RKVKIAKGWGWLACVDVAGGTGRDKSVI 305


>gi|312964323|ref|ZP_07778627.1| terminase B protein [Escherichia coli 2362-75]
 gi|331655801|ref|ZP_08356790.1| terminase B protein (PACase B protein) (DNA packaging B protein)
           [Escherichia coli M718]
 gi|312291036|gb|EFR18910.1| terminase B protein [Escherichia coli 2362-75]
 gi|323186470|gb|EFZ71817.1| terminase B protein [Escherichia coli 1357]
 gi|323969205|gb|EGB64507.1| terminase B protein [Escherichia coli TA007]
 gi|325495624|gb|EGC93488.1| DNA pacase B subunit [Escherichia fergusonii ECD227]
 gi|331046575|gb|EGI18664.1| terminase B protein (PACase B protein) (DNA packaging B protein)
           [Escherichia coli M718]
          Length = 494

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 59/328 (17%), Positives = 117/328 (35%), Gaps = 36/328 (10%)

Query: 20  MHAECVLSFKN---FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPT 76
           M   CV   +      +  + W      L   +    WQ + +          + +    
Sbjct: 1   MARSCVTDPRWRELVALYRYDWIAAADVLFGKTP--TWQQDLI----------IESVQEQ 48

Query: 77  IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136
             K ++S+G G GK+ + + M++  I   PG   I +AN   Q+   ++  +        
Sbjct: 49  GSKTSVSSGHGTGKSDMTSIMIMLFIIMYPGARAIIVANKIQQVMTGIFKYIKI------ 102

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMG-IDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
             +W    S     + ++               +T+  + +     +   G H  H +  
Sbjct: 103 --NWATATSRFPWLADYFVLTETAFYEVTGKGVWTVVPKGFRLGSEEALAGEHADH-LLY 159

Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED-------W 248
             DEASG  D     I G  T  +      + S   R +G+FYD  +   +        +
Sbjct: 160 IIDEASGVSDRAFGIITGALTGQDNRIL--LLSQPTRPSGYFYDTHHKLAKRPGNPDGVY 217

Query: 249 KRYQIDTRTVEGIDSGFHE-GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
               +++     +   F +  +    G D+ +  I++ G FP+ +    +  + +E A  
Sbjct: 218 TAITLNSEESPLVTPAFIKMKLAEYGGRDNPMYMIKVRGLFPKSQDGFLLGRDEVERATR 277

Query: 308 REAIDDLYAPLIMGCDIA-GEGGDKTVV 334
           R+         +   D+A G G DK+V+
Sbjct: 278 RKVKIAKGWGWLACVDVAGGTGRDKSVI 305


>gi|323179619|gb|EFZ65182.1| terminase B protein [Escherichia coli 1180]
          Length = 453

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 59/273 (21%), Positives = 115/273 (42%), Gaps = 21/273 (7%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  +++G G GK++L A ++L  +   P   +I +AN   Q+K  ++  V ++ +    R
Sbjct: 7   RTTVTSGHGTGKSSLTAMLLLIFMILFPDARVIIVANKIGQVKTGVFKYVKQYWANAVKR 66

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
           H +      L  + +Y    +         + + C+ Y     +   G H  H + +  D
Sbjct: 67  HGWLQTYFVLSDTMFYERSRK-------GIWEVLCKGYRLGNEEALAGEHAAH-LLLILD 118

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-------IPLEDWKRY 251
           EASG  D     + G  TE +     +M S   R +G+FYD  +        P   W   
Sbjct: 119 EASGISDKAIGVMTGALTEEDNR--MLMLSQPTRPSGYFYDSHHSQAKTPDNPKGIWTAI 176

Query: 252 QIDTRTVEGIDSGFH-EGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
            +++     +   F  + ++   G DS    +++LGQFP++     +  +  + A  R+ 
Sbjct: 177 VLNSEESPFVTPQFIKQKLLEYGGRDSIEYMVKVLGQFPREINGYLLGRDECDRAARRKV 236

Query: 311 IDDLYAPLIMGCDIAGEGGDKTV--VVFRRGNI 341
           + +     +   D+ G G DK+V  +    G+ 
Sbjct: 237 LLEKNWGWVATADV-GNGRDKSVLNICKVSGHR 268


>gi|56266666|gb|AAV84947.1| DNA pacase B subunit [Enterobacteria phage D6]
          Length = 502

 Score =  167 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 59/273 (21%), Positives = 115/273 (42%), Gaps = 21/273 (7%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  +++G G GK++L A ++L  +   P   +I +AN   Q+K  ++  V ++ +    R
Sbjct: 56  RTTVTSGHGTGKSSLTAMLLLIFMILFPDARVIIVANKIGQVKTGVFKYVKQYWANAVKR 115

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
           H +      L  + +Y    +         + + C+ Y     +   G H  H + +  D
Sbjct: 116 HGWLQTYFVLSDTMFYERSRK-------GIWEVLCKGYRLGNEEALAGEHAAH-LLLILD 167

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-------IPLEDWKRY 251
           EASG  D     + G  TE +     +M S   R +G+FYD  +        P   W   
Sbjct: 168 EASGISDKAIGVMTGALTEEDNR--MLMLSQPTRPSGYFYDSHHSQAKTPDNPKGIWTAI 225

Query: 252 QIDTRTVEGIDSGFH-EGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
            +++     +   F  + ++   G DS    +++LGQFP++     +  +  + A  R+ 
Sbjct: 226 VLNSEESPFVTPQFIKQKLLEYGGRDSIEYMVKVLGQFPREINGYLLGRDECDRAARRKV 285

Query: 311 IDDLYAPLIMGCDIAGEGGDKTV--VVFRRGNI 341
           + +     +   D+ G G DK+V  +    G+ 
Sbjct: 286 LLEKNWGWVATADV-GNGRDKSVLNICKVSGHR 317


>gi|134287454|ref|YP_001109621.1| hypothetical protein Bcep1808_7700 [Burkholderia vietnamiensis G4]
 gi|134131876|gb|ABO60570.1| hypothetical protein Bcep1808_7700 [Burkholderia vietnamiensis G4]
          Length = 509

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 51/300 (17%), Positives = 110/300 (36%), Gaps = 22/300 (7%)

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           ++A   H     ++ +    + ++S+G G GKT+  A + LW +      + I  A   +
Sbjct: 34  LKAPTHHQIQMFDSVSKQGSRTSVSSGHGTGKTSGFAIIALWHLLCYYLSNTILTAPKIS 93

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA-ELLEQSMGIDSKHYTITCRTYS 177
            + + +W E +   + + +               ++  E     +     ++ +  ++  
Sbjct: 94  TVSDGVWKEFADLSTKISNGPQ-------SWIWEYFVIESERVYVRGYKLNWFVIAKSAP 146

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
              P+   G H    +    DEASG PD     I G  T+        + S   R +G+F
Sbjct: 147 RGSPENLAGAHRDW-LLWLADEASGIPDDNFGVITGSLTDERNR--MCLASQPTRSSGFF 203

Query: 238 YDIFNIPL----EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293
           Y+  +         W     ++     + + F      +Y  +    +I++ G+FP+   
Sbjct: 204 YETHHALSRAEGGPWNNLVFNSEFSPIVSAKFIAEKKLQYTEEE--YQIKVQGRFPENSS 261

Query: 294 NNFIPHNYIEEAMSREA-IDDLYAPLIMGCDIAGEG-GDKTVVVFRRGNIIEHIFDWSAK 351
              +    IE  + R     D +   ++  D+ G G  D+TV+       +    ++   
Sbjct: 262 KYLVGPQAIEACVGRTVIKPDEHWGWLLPVDVGGGGWRDETVM---PALHVIGRGEYGMD 318


>gi|262316909|emb|CBA18135.1| putative terminase B [Paenibacillus phage phiBP]
          Length = 248

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 58/239 (24%), Positives = 100/239 (41%), Gaps = 30/239 (12%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P +WQ    + +  +               ++ +G+G+GKT L A + LW +   P   +
Sbjct: 39  PDKWQESVSDDIAKY------------RFVSVRSGQGVGKTALEAAISLWFLCCFPFPRV 86

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLP-HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           +C A +  QL + LWAE+SKW S  P  +   +     ++   +               +
Sbjct: 87  VCTAPTRQQLNDVLWAEISKWQSQSPILKRILKWTKTKIYMKNYEER------------W 134

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
             T RT ++  P+   G H    M    DEASG  D I  +I G  +      F     N
Sbjct: 135 FATARTATK--PENMQGFH-EDYMLFIVDEASGVDDRIMAAIFGTLSGDYNKLFMC--GN 189

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
             + +G+F+D  N     ++ +++             E + ++YG  SDV R+ +LG+F
Sbjct: 190 PTKTSGFFFDSHNRDRAIYRTHRVSCLDSPRTSKENIEMLKAKYGEGSDVWRVRVLGEF 248


>gi|323948959|gb|EGB44853.1| terminase B protein [Escherichia coli H252]
          Length = 502

 Score =  165 bits (417), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 115/273 (42%), Gaps = 21/273 (7%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  +++G G GK++L A ++L  +   P   +I +AN   Q+K  ++  V ++ +    R
Sbjct: 56  RTTVTSGHGTGKSSLTAMLLLIFMILFPDARVIIVANKIGQVKTGVFKYVKQYWANAVKR 115

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
           H +      L  + +Y    +         + + C+ Y     +   G H  H + +  D
Sbjct: 116 HGWLQTYFVLSDTMFYERSRK-------GIWEVLCKGYRLGNEEALAGEHAAH-LLLILD 167

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-------IPLEDWKRY 251
           EASG  D     + G  TE +     +M S   R +G+FYD  +        P   W   
Sbjct: 168 EASGISDKAIGVMTGALTEEDNR--MLMLSQPTRPSGYFYDSHHSRAKTPDNPKGIWTAI 225

Query: 252 QIDTRTVEGIDSGFHEG-IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
            +++     +   F +  ++   G DS    +++LGQFP++     +  +  + +  R+ 
Sbjct: 226 VLNSEESPFVTPQFIKEKLLEYGGRDSIEYMVKVLGQFPREINGYLLGRDECDRSARRKV 285

Query: 311 IDDLYAPLIMGCDIAGEGGDKTV--VVFRRGNI 341
           + +     +   D+ G G DK+V  +    G+ 
Sbjct: 286 LLEKNWGWVATADV-GNGRDKSVLNICKVSGHR 317


>gi|269119479|ref|YP_003307656.1| hypothetical protein Sterm_0853 [Sebaldella termitidis ATCC 33386]
 gi|268613357|gb|ACZ07725.1| hypothetical protein Sterm_0853 [Sebaldella termitidis ATCC 33386]
          Length = 499

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 57/313 (18%), Positives = 111/313 (35%), Gaps = 40/313 (12%)

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126
            + V  +     + ++ AG   GK++L   +  + + TRP   +I  A +  QLK   WA
Sbjct: 35  QTRVLQAFNEYRRLSVPAGHSTGKSSLAGGLTTYWLITRPKSRVIVTAPTYRQLKTIYWA 94

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE--------------------------- 159
           EV+K  +    +     +           +L                             
Sbjct: 95  EVNKIYNRSKLKQLNLFEINDKIMRINDKDLKREWFALPVTASTPEGMQGQHGDKTEVIE 154

Query: 160 -------QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212
                       D +   I  +    E+    +   +   + V  DE+SG  + I + + 
Sbjct: 155 QIMKHLGIEEIGDDETIEIVSQILRGEKQIEGLTKEDKEKLLVMVDESSGVKNEIFEVLE 214

Query: 213 GFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISR 272
           G  T+ +     ++  N  +  G+FY+    P   + +  + +     +       +   
Sbjct: 215 G--TDYDK---LVLFGNMTKNTGYFYESVYNPKSKFYKVTMSSYNSPFMKKEQIHDLEET 269

Query: 273 YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA-GEGGDK 331
           YG DS+V R+ + G+ P    N+    N I+ A  R      Y  + +G D+  G GGD 
Sbjct: 270 YGPDSNVVRVRLKGEAPDGNENSIFSSNKIDSAFQRSLSLSEYETIKLGVDVGKGSGGDS 329

Query: 332 TVVVFRRGNIIEH 344
           + +  ++ N +  
Sbjct: 330 STIYEKKDNRVRK 342


>gi|260871239|ref|YP_003238019.1| DNA packaging protein [Escherichia coli O111:H- str. 11128]
 gi|257767818|dbj|BAI39311.1| DNA packaging protein [Escherichia coli O111:H- str. 11128]
          Length = 494

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 60/328 (18%), Positives = 119/328 (36%), Gaps = 36/328 (10%)

Query: 20  MHAECVLSFKN---FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPT 76
           M   CV   +      +  + W      L   +    WQ +    +      + +     
Sbjct: 1   MARSCVTDPRWRELVALYRYDWIAAADVLFGKTP--TWQQD---EIIESTQQDGSW---- 51

Query: 77  IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136
               ++++G G GK+ + + + +  I   PG  +I +AN   Q+ + ++  +        
Sbjct: 52  ---TSVTSGHGTGKSDMTSIIAILFIMFFPGARVILVANKRQQVLDGIFKYIK------- 101

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMG-IDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
             +W    S     S ++               +TI  ++      +   G H  H +  
Sbjct: 102 -SNWATAVSRFPWLSKYFILTETSFFEVTGKGVWTILIKSCRSGNEEALAGEHADH-LLY 159

Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-------IPLEDW 248
             DEASG  D     I G  T  +      + S   R +G+FYD  +        P   +
Sbjct: 160 IIDEASGVSDKAFSVITGALTGKDNRIL--LLSQPTRPSGYFYDSHHRLAIRPGNPDGLF 217

Query: 249 KRYQIDTRTVEGIDSGFHE-GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
               +++     +D+ F    +    G D+ +  I++ G+FP+ +    +  + +E A  
Sbjct: 218 TAIILNSEESPLVDAKFIRAKLAEYGGRDNPMYMIKVRGEFPKSQDGFLLGRDEVERATR 277

Query: 308 REAIDDLYAPLIMGCDIA-GEGGDKTVV 334
           R+         +   D+A G G DK+V+
Sbjct: 278 RKVKIAKGWGWVACVDVAGGTGRDKSVI 305


>gi|46401730|ref|YP_006576.1| PacB [Enterobacteria phage P1]
 gi|301646767|ref|ZP_07246623.1| putative terminase B protein [Escherichia coli MS 146-1]
 gi|129547|sp|P27753|TERL_BPP1 RecName: Full=Large terminase protein; AltName: Full=DNA-packaging
           protein B; AltName: Full=PACase B protein; AltName:
           Full=Terminase B protein; AltName: Full=Terminase large
           subunit
 gi|68597607|sp|Q5XLR0|TERL_BPP7 RecName: Full=Large terminase protein; AltName: Full=DNA-packaging
           protein B; AltName: Full=PACase B protein; AltName:
           Full=Terminase B protein; AltName: Full=Terminase large
           subunit
 gi|33323612|gb|AAQ07582.1|AF503408_106 PacB [Enterobacteria phage P7]
 gi|215636|gb|AAA21724.1| pacB [Enterobacteria phage P1]
 gi|33338757|gb|AAQ14080.1| PacB [Enterobacteria phage P1]
 gi|33338866|gb|AAQ14188.1| PacB [Enterobacteria phage P1]
 gi|54112354|gb|AAV28854.1| PacB [Enterobacteria phage P7]
 gi|301075042|gb|EFK89848.1| putative terminase B protein [Escherichia coli MS 146-1]
          Length = 494

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 60/328 (18%), Positives = 119/328 (36%), Gaps = 36/328 (10%)

Query: 20  MHAECVLSFKN---FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPT 76
           M   CV   +      +  + W      L   +    WQ +    +      + +     
Sbjct: 1   MARSCVTDPRWRELVALYRYDWIAAADVLFGKTP--TWQQD---EIIESTQQDGSW---- 51

Query: 77  IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136
               ++++G G GK+ + + + +  I   PG  +I +AN   Q+ + ++  +        
Sbjct: 52  ---TSVTSGHGTGKSDMTSIIAILFIMFFPGARVILVANKRQQVLDGIFKYIK------- 101

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMG-IDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
             +W    S     S ++               +TI  ++      +   G H  H +  
Sbjct: 102 -SNWATAVSRFPWLSKYFILTETSFFEVTGKGVWTILIKSCRPGNEEALAGEHADH-LLY 159

Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-------IPLEDW 248
             DEASG  D     I G  T  +      + S   R +G+FYD  +        P   +
Sbjct: 160 IIDEASGVSDKAFSVITGALTGKDNRIL--LLSQPTRPSGYFYDSHHRLAIRPGNPDGLF 217

Query: 249 KRYQIDTRTVEGIDSGFHE-GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
               +++     +D+ F    +    G D+ +  I++ G+FP+ +    +  + +E A  
Sbjct: 218 TAIILNSEESPLVDAKFIRAKLAEYGGRDNPMYMIKVRGEFPKSQDGFLLGRDEVERATR 277

Query: 308 REAIDDLYAPLIMGCDIA-GEGGDKTVV 334
           R+         +   D+A G G DK+V+
Sbjct: 278 RKVKIAKGWGWVACVDVAGGTGRDKSVI 305


>gi|331649955|ref|ZP_08351031.1| terminase B protein (PACase B protein) (DNA packaging B protein)
           [Escherichia coli M605]
 gi|331041212|gb|EGI13366.1| terminase B protein (PACase B protein) (DNA packaging B protein)
           [Escherichia coli M605]
          Length = 494

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 60/328 (18%), Positives = 119/328 (36%), Gaps = 36/328 (10%)

Query: 20  MHAECVLSFKN---FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPT 76
           M   CV   +      +  + W      L   +    WQ +    +      + +     
Sbjct: 1   MARSCVTDPRWRELVALYRYDWIAAADVLFGKTP--TWQQD---EIIESTQQDGSW---- 51

Query: 77  IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136
               ++++G G GK+ + + + +  I   PG  +I +AN   Q+ + ++  +        
Sbjct: 52  ---TSVTSGHGTGKSDMTSIIAILFIMFFPGARVILVANKRQQVLDGIFKYIK------- 101

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMG-IDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
             +W    S     S ++               +TI  ++      +   G H  H +  
Sbjct: 102 -SNWATAVSRFPWLSKYFILTETSFFEVTGKGVWTILIKSCRPGNEEALAGEHADH-LLY 159

Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-------IPLEDW 248
             DEASG  D     I G  T  +      + S   R +G+FYD  +        P   +
Sbjct: 160 IIDEASGVSDKAFSVITGALTGKDNRIL--LLSQPTRPSGYFYDSHHRLAIRPGNPDGLF 217

Query: 249 KRYQIDTRTVEGIDSGFHE-GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
               +++     +D+ F    +    G D+ +  I++ G+FP+ +    +  + +E A  
Sbjct: 218 TAIILNSEESPLVDAKFIRAKLAEYGGRDNPMYMIKVRGEFPKSQDGFLLGRDEVERATR 277

Query: 308 REAIDDLYAPLIMGCDIA-GEGGDKTVV 334
           R+         +   D+A G G DK+V+
Sbjct: 278 RKVKIAKGWGWVACVDVAGGTGRDKSVI 305


>gi|307308936|ref|ZP_07588619.1| hypothetical protein SinmeBDRAFT_4503 [Sinorhizobium meliloti
           BL225C]
 gi|306900570|gb|EFN31183.1| hypothetical protein SinmeBDRAFT_4503 [Sinorhizobium meliloti
           BL225C]
          Length = 472

 Score =  163 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 64/276 (23%), Positives = 113/276 (40%), Gaps = 15/276 (5%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             +    G GKT ++A  + W +     + +   A SE+ +K+ +W E+    S +    
Sbjct: 50  ITVKGSSGWGKTFISAISLWWSLIVFDPVKVTIFAPSESTIKSGIWNELQVLYSNMA--- 106

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                   L    +     +       +      R  S++      G H+ +   V  DE
Sbjct: 107 -------PLFRELFEVSATKIFRKSRGETCWAEYRLVSKDNIAAARGFHSKN-NIVIADE 158

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP--LEDWKRYQIDTRT 257
           ASG  D+I    L       P    ++ SN  + +G+F+  +  P   +DW +     R 
Sbjct: 159 ASGIEDVIFTGALLNVLNDGPGAKVVLVSNPDKASGFFFKTWRDPELSKDWIKVHGSIRD 218

Query: 258 VEGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAM-SREAIDDLY 315
                 G  E     YG   S      + G+FP  +V+  I   +++EA+ +++AI +  
Sbjct: 219 KPNYTPGEEERFARLYGGVTSRDYLTLVEGEFPLSDVDGLISREFLDEAVTNKDAIPNPK 278

Query: 316 APLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
           AP+I G D AG G DK+V+  R  N++    +W+  
Sbjct: 279 APIIWGLDPAGAGKDKSVLAIRHDNVLRGFEEWAGL 314


>gi|304399103|ref|ZP_07380971.1| DNA packaging protein [Pantoea sp. aB]
 gi|304353343|gb|EFM17722.1| DNA packaging protein [Pantoea sp. aB]
          Length = 503

 Score =  162 bits (409), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 66/318 (20%), Positives = 120/318 (37%), Gaps = 33/318 (10%)

Query: 32  VMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT 91
           +   + W +    L     P   Q E M +V                   +++G G GK+
Sbjct: 21  IRYRYNWALAVVELFGMI-PTWQQEEIMNSVQETGSQ-----------TTVTSGHGTGKS 68

Query: 92  TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151
           +L A M+L  +   P   +I +AN   Q+K  ++  V  + +    RH +     +L  +
Sbjct: 69  SLTAMMLLIYMIMYPDARVIIVANKIGQVKTGVFKYVKTYWANAARRHPWLQNYFTLTDT 128

Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211
            +Y              + + C+ Y     +   G H  H   +  DEASG  D     +
Sbjct: 129 MFYE-------KSRKGIWEVLCKGYRLGNEEALAGEHAAHI-LLILDEASGISDKAIAIM 180

Query: 212 LGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-------IPLEDWKRYQIDTRTVEGIDSG 264
            G  TE +     +M S   R +G+FYD  +        P   W    +++     +   
Sbjct: 181 RGALTEEDNR--MLMMSQPTRPSGYFYDSHHSLARHPDNPNGFWNAIVLNSEEAPHVTLK 238

Query: 265 FH-EGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
           F  E ++   G DS    +++LG+FP+      +  +  + A  R+   +     +   D
Sbjct: 239 FIREKLVEYGGRDSLEYMVKVLGRFPRNVSGYLLGRDECDRAARRKVYLEKGWGWVATAD 298

Query: 324 IAGEGGDKTV--VVFRRG 339
           + G G DK++  +    G
Sbjct: 299 V-GNGRDKSILNICKVSG 315


>gi|332974843|gb|EGK11758.1| hypothetical protein HMPREF9373_1714 [Psychrobacter sp. 1501(2011)]
          Length = 520

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 54/293 (18%), Positives = 107/293 (36%), Gaps = 26/293 (8%)

Query: 54  WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113
           WQ E +            +      + ++++G G GK+     + LW +   P   ++  
Sbjct: 42  WQQELL----------FKSIVVPGSRTSVASGHGTGKSRSAGIIALWHLLFYPESVMLFT 91

Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173
           A    QL+  +W E++  L  L +       +  +          +  +      + +  
Sbjct: 92  APQIGQLRTVVWKEINICLQRLRNNKALGWLADYV-----VVLAEKIYIKGFKDTWFVFA 146

Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233
           +T  + +P    G H  H M V+ DEA G  D + +  +G  T  N     ++TS   + 
Sbjct: 147 KTAPKHQPTNIAGQHGDHYM-VWADEACGIDDAVMEVAIGALTHENNRA--VLTSQPAKN 203

Query: 234 NGWFYDIFNIPLE----DWKRYQIDTRTVEGIDSG-FHEGIISRYGLDSDVARIEILGQF 288
            G+FYD  +         W   + +      +      E +      +S    I I G+F
Sbjct: 204 TGFFYDTHHKLSHYNGGKWIALEFNGEMSPIVSKEKLIEALYQYGSRNSPGYLIRIRGKF 263

Query: 289 PQQEVNNFIPHNYIE--EAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVFRR 338
           P+ +    +     E  +A      +     +I+  D+ G+ G D +V+   +
Sbjct: 264 PELKGEYLLTRTDYENMKAHPCVIKEGDKWGIIVTVDVGGDVGRDSSVISVLQ 316


>gi|148653111|ref|YP_001280204.1| hypothetical protein PsycPRwf_1309 [Psychrobacter sp. PRwf-1]
 gi|148572195|gb|ABQ94254.1| hypothetical protein PsycPRwf_1309 [Psychrobacter sp. PRwf-1]
          Length = 520

 Score =  162 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 53/293 (18%), Positives = 106/293 (36%), Gaps = 26/293 (8%)

Query: 54  WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113
           WQ E +            +      + ++++G G GK+     + LW +   P   ++  
Sbjct: 42  WQQELL----------FKSIVVPGSRTSVASGHGTGKSRSAGIIALWHLLFYPESVMLFT 91

Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173
           A    QL+  +W E++  L  L +       +  +          +  +      + +  
Sbjct: 92  APQIGQLRTVVWKEINICLQRLRNNKALGWLADYV-----VVLAEKIYIKGFKDTWFVFA 146

Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233
           +T  + +P    G H  H M V+ DEA G  D + +  +G  T  N     ++TS   + 
Sbjct: 147 KTAPKHQPTNIAGQHGDHYM-VWADEACGIDDAVMEVAIGALTHENNRA--VLTSQPAKN 203

Query: 234 NGWFYDIFNIPLED----WKRYQIDTRTVEGIDSG-FHEGIISRYGLDSDVARIEILGQF 288
            G+FYD  +         W   + +      +      E +      +S    I I G+F
Sbjct: 204 TGFFYDTHHKLSHHNGGKWTALEFNGEMSPIVSKDKLIEALYQYGSRNSPGYLIRIRGKF 263

Query: 289 PQQEVNNFIPHNYIEEAMSREAIDDLYAPL--IMGCDIAGE-GGDKTVVVFRR 338
           P+ +    +     E    +  + +       I+  D+ G+ G D +V+   +
Sbjct: 264 PELKGEYLLTRTDYENMKQQPCVIEEGDKWGIIVAVDVGGDVGRDSSVISVMQ 316


>gi|161789175|ref|YP_001595730.1| PacB [Vibrio sp. 0908]
 gi|161761461|gb|ABX77106.1| PacB [Vibrio sp. 0908]
          Length = 572

 Score =  157 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 61/286 (21%), Positives = 107/286 (37%), Gaps = 25/286 (8%)

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK-WLS 133
           P   + ++++G G GK+ L A + L  I T P    +  ANS  Q+ N +++ + + W+ 
Sbjct: 58  PVGARVSVASGHGTGKSHLTAALCLHFIITHPESLCMLTANSLDQVTNVVFSYIKRCWVK 117

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
           +   + W E          +               + I  +T S+   +   G H    M
Sbjct: 118 ICQRQPWLE--------QYFVITAKSFYAKGYKGVWQIFGKTCSKGNEEGLAGQHRRDYM 169

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED--WKRY 251
            V  DEASG  D   + + G  TE N     ++ S   R  G F D      E   +   
Sbjct: 170 -VVVDEASGVSDRAFEVLRGALTEDNNK--MLLISQFTRPTGHFADSQMELAEQGLYTAI 226

Query: 252 QIDTRTVEGIDSGFH-EGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
            +++     ++  F  E  I   G+ S    I +LG  P       I  + +++      
Sbjct: 227 TLNSEMSPFVNLKFIREKRIEYGGVTSPEYGIRVLGVCPDDASGFLISRSLVDKGFEAVI 286

Query: 311 IDDLYAPLIMGCDIA-GEGGDKTVVVF---------RRGNIIEHIF 346
                   +   D+A GEG D +V+           R+  +++ I 
Sbjct: 287 EFADEWGWVAVADVAGGEGRDSSVLKIGKVCGFGSERQVEVVKAIE 332


>gi|256392042|ref|YP_003113606.1| hypothetical protein Caci_2856 [Catenulispora acidiphila DSM 44928]
 gi|256358268|gb|ACU71765.1| conserved hypothetical protein [Catenulispora acidiphila DSM 44928]
          Length = 484

 Score =  155 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 56/312 (17%), Positives = 104/312 (33%), Gaps = 37/312 (11%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
           + + P RW  + +         ++  S       A+ +  G GK+ + + +  W + T P
Sbjct: 24  YLADPARWVDDKLGEYLWSRQVDIATSVRDQRLTAVQSCHGTGKSFVASRLTAWWLDTHP 83

Query: 107 GMS--IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
                ++  A +  Q+K  LWAE++K  +    R            +     + E     
Sbjct: 84  PGEAFVVTTAPTGDQVKAILWAEINKAFAKAEARG-----------TPLPGRINETDWKY 132

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
           D K      R  S+  P  F G H  + + V  DEA G       + L   T ++     
Sbjct: 133 D-KFLVAFGRKPSDYNPHAFQGIHAKY-VLVILDEACGISKQFWTAALAIATGVHCRIL- 189

Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG--------------FHEGII 270
               N       F  +     + W   +I  R                      +   + 
Sbjct: 190 -AIGNPDDPGSHFAQVC--KSDRWNMIKIAARDTPNFTGEEVPDDLADMLVSQAYVLDMA 246

Query: 271 SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA---PLIMGCDIAGE 327
             +G +S +   ++  +FP    +  +  + +                 P+ +G D+ G 
Sbjct: 247 EEFGPESPIYLSKVDAEFPSDASDGVVRLSKLMACTREPVHPYAPDRLVPVELGVDL-GA 305

Query: 328 GGDKTVVVFRRG 339
           GGD+T +  RRG
Sbjct: 306 GGDETCIRERRG 317


>gi|292670767|ref|ZP_06604193.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292647388|gb|EFF65360.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 442

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 48/289 (16%), Positives = 92/289 (31%), Gaps = 28/289 (9%)

Query: 79  KCAISAG-RGIGKTTLNAWMMLWLISTRPGM--SIICIANSETQLKNTLWAEVSKWLSML 135
           + A+    R  GKT      M+               +A    Q K   W  +  + + +
Sbjct: 26  RFAVLVCHRRFGKTVGTVNEMIRKAILNDKKAPVYAYVAPYRNQAKRVAWEYLKYYTNPI 85

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
           P R                    E  + + ++H             D        +   V
Sbjct: 86  PGR---------------VVNESELYIELPTRHARSPGARLYIIGADHPDALRGIYLDGV 130

Query: 196 FNDEASGTPDIINK-SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE--DWKRYQ 252
             DE +     +    I     +      W +   T +    FY+++    +   W    
Sbjct: 131 ILDEYADIKPELWGGVIRPALADRQG---WAVFIGTPKGQNQFYEMYQHAEKSAGWYSCI 187

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
             T     + +   + + ++        R E+L  F     +  IP + +  A +R   D
Sbjct: 188 YRTDETGVLPAEELKDMQAQMTE--MEIRQELLCDFTASASDVVIPIDLVTAAANRLLKD 245

Query: 313 DL--YAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
           D     P+I+G D+A  G D+TV+  R+G  ++ +  ++     ET   
Sbjct: 246 DDVLGQPVILGVDVARFGDDRTVLCVRQGLWLKEVRTFTGLSTMETASR 294


>gi|216906085|ref|YP_002333619.1| terminase [Abalone shriveling syndrome-associated virus]
 gi|216263178|gb|ACJ72002.1| terminase [Abalone shriveling syndrome-associated virus]
          Length = 507

 Score =  152 bits (383), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 62/308 (20%), Positives = 114/308 (37%), Gaps = 21/308 (6%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQLE ++ +      N +  +  +   A+S G G GKT L+  + +W     PG     
Sbjct: 50  DWQLEIVDYIAKFFRKNSDEKH-FVCAIAVSGGNGTGKTKLSKALNIWRFCCHPGSRQFI 108

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           + NSE Q K T +  + + +S L         +     + +Y+  +     + +      
Sbjct: 109 LTNSERQTKRTGFTMLVRRISKL-----LSCIAALESSAYYYSPAVADKPEVRTNDMWDV 163

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR- 231
                        G H+   M    DE++   D + +++   +T+         T N   
Sbjct: 164 TYLLQSSTEAALSGLHHP-MMTFSFDESTYFNDHVWQALENMWTQG--QVLCFCTGNPSH 220

Query: 232 RLNGWFYDIF----NIPLEDWKRYQIDTRTVE--GIDSGFHEGIISRYGLDSDVARIEIL 285
             N +F  +F    +     W    +    +     +      I   YG         +L
Sbjct: 221 DNNNYFARLFNKSLHKKDSLWLTRCVSLLELPLKYRNDARARYIEEHYGKTHPRYIASVL 280

Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDD-LYAPLIMGCDI---AGEGGDKTVVVFRRGNI 341
           GQFP++   N      I EAM RE  ++ ++ P+IMG D+   A  G   + +  R G  
Sbjct: 281 GQFPKKNTCNPFDITAISEAMEREVREEFIHHPVIMGIDVSISANNGS-ASAICVREGTA 339

Query: 342 IEHIFDWS 349
           +  + ++ 
Sbjct: 340 VRVLREYR 347


>gi|255929035|ref|YP_003097347.1| DNA terminase packaging enzyme large subunit [Synechococcus phage
           S-RSM4]
 gi|255705321|emb|CAR63310.1| DNA terminase packaging enzyme large subunit [Synechococcus phage
           S-RSM4]
          Length = 550

 Score =  152 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 51/374 (13%), Positives = 104/374 (27%), Gaps = 64/374 (17%)

Query: 9   QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68
           Q  ++++ E +   +C      F M +       + L  F     +Q E +         
Sbjct: 22  QFTKKQIDEWI---KCKNDPIYFAMNYIQIISLDEGLVPFKMYD-FQKEILRD------- 70

Query: 69  NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
                +   F  A    R  GK+T     +L+       ++I  +AN  +  +  L    
Sbjct: 71  ----FHENRFNIA-KLPRQTGKSTTVVAYLLYYAIFYDSVNIGILANKASTARELLGRL- 124

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
                          ++L            + ++ +++    +   T       +     
Sbjct: 125 -----------QLAYENLPKWMQHGILVWNKGNVELENGSKILAAST-------SASAVR 166

Query: 189 NTHGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244
                 +F DE +  P    +    S+    T        ++  +T      FY ++   
Sbjct: 167 GMSFNILFLDEFAFVPNHVAEQFFASVYPTITSG--KSTKVIIISTPNGMNHFYKMWEDA 224

Query: 245 L---EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301
                D+   ++    V G D+ + E  I            E    F         P   
Sbjct: 225 RRGKNDYVTNEVHWSQVPGRDAKWKEETIKNTS--PRQFAQEFECDFLGSADTLISPAKL 282

Query: 302 --------IEEAMSREAID--DLYAPLIMGCDIAGE-GGDKTVVVFRRGNIIEHIFDWSA 350
                   I+     +  +        I+  D+A   GGD +  +         I     
Sbjct: 283 QNIPFHDPIQSNAGLDVYERVQKDHEYIITVDVARGIGGDYSAFIVFD------ITTMPY 336

Query: 351 KLIQETNQEGC-PV 363
           K++ +       PV
Sbjct: 337 KIVAKYRNNEIKPV 350


>gi|326781864|ref|YP_004322266.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
           S-SM2]
 gi|310003054|gb|ADO97452.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
           S-SM2]
          Length = 549

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 54/369 (14%), Positives = 109/369 (29%), Gaps = 63/369 (17%)

Query: 11  LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70
            E+++ E L   +C      F   +       + L  F  P+ +Q + +           
Sbjct: 22  TEEQVIEFL---KCKEDPVYFANNYIKIVSLDEGLTQF-HPYHFQEKLI----------- 66

Query: 71  NNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK 130
           NN +   F       R  GK+T     +L        ++I  +AN     +  L      
Sbjct: 67  NNFHNNRFNIC-KMPRQTGKSTTVVSYLLHYAVFNDSVNIGILANKAATARELLGRL--- 122

Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
                        ++L            + S+ +++    +   T       +       
Sbjct: 123 ---------QTAYENLPRWMQQGIIAWNKGSLELENGSKILAAST-------SASAVRGM 166

Query: 191 HGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246
               +F DE +  P    D    S+    T     +  ++  +T      FY +++   +
Sbjct: 167 SFNILFLDEFAFVPNHVADSFFASVYPTITSGKNTK--VIIVSTPHGMNHFYRMWHDAEK 224

Query: 247 DWKRYQID---TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY-- 301
               Y         V G D  + E  I+         ++E   +F         P     
Sbjct: 225 RKNEYIPTDVHWSEVPGRDDKWKETTIANTSEQQ--FKVEFECEFLGSVDTLIAPSKLRT 282

Query: 302 --IEEAMSREAIDDLYAP------LIMGCDIAGE-GGDKTVVVFRRGNIIEHIFDWSAKL 352
              +  + R A  D+Y P       +M  D+A   G D +        +   I ++  ++
Sbjct: 283 LIYDNPIQRNAGLDVYEPPKDKHDYVMTVDVARGVGEDYSAF------VCVDITEFPHRI 336

Query: 353 IQETNQEGC 361
           + +      
Sbjct: 337 VAKYRNNDI 345


>gi|61806000|ref|YP_214360.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
           P-SSM2]
 gi|61374509|gb|AAX44506.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
           P-SSM2]
 gi|265525210|gb|ACY76007.1| terminase large subunit gp17 [Prochlorococcus phage P-SSM2]
          Length = 547

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/376 (13%), Positives = 101/376 (26%), Gaps = 60/376 (15%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEA 61
           P L   +  +E     +    +C      F   +       + L  F             
Sbjct: 9   PNLKKANTPIEFSKDNIREFLKCKEDPVYFTRNYIKIVSLDEGLVPF------------N 56

Query: 62  VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121
           +       +   +   F       R  GK+T     +L        +++  +AN  +  +
Sbjct: 57  MYDFQEKLITRFHENRFNIC-KMPRQTGKSTTCISYLLHYAVFNDNVNVAVLANKASTAR 115

Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
           + L                   ++L            + S+ +++        T S    
Sbjct: 116 DLLGRL------------QLAYENLPRWMQQGIISWNKGSLELENGSKISANSTSS---- 159

Query: 182 DTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
                        +F DE +  P    D    S+    T     +  ++  +T R    F
Sbjct: 160 ---SAVRGGSYNVIFLDEFAFIPNHIADDFFASVYPTITSGQSTK--VIIVSTPRGMNHF 214

Query: 238 YDIFNI---PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294
           Y +++       ++    +    V G D  + E  I+         +IE   +F      
Sbjct: 215 YRMWHDSEKGKSEYVATDVHWSEVPGRDEEWKEQTIANTSEQQ--FKIEFECEFLGSVNT 272

Query: 295 NFIPHNY----IEEAMSREAI------DDLYAPLIMGCDIAGE-GGDKTVVVFRRGNIIE 343
              P        E   +R A              I+  D+A   G D +  +        
Sbjct: 273 LINPAKLRNLVYEAPKTRNAGLDIYETPVKEHNYIITVDVARGLGNDYSAFIVFD----- 327

Query: 344 HIFDWSAKLIQETNQE 359
              ++  K++ +    
Sbjct: 328 -TTEFPYKVVAKYRNN 342


>gi|111222161|ref|YP_712955.1| hypothetical protein FRAAL2741 [Frankia alni ACN14a]
 gi|111149693|emb|CAJ61385.1| hypothetical protein FRAAL2741 [Frankia alni ACN14a]
          Length = 535

 Score =  147 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 63/326 (19%), Positives = 110/326 (33%), Gaps = 44/326 (13%)

Query: 46  EHFSQPHRWQLEFMEAVDVHC-HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            +  +P RW  + +  V +      + N+     K A+ +    GK+ + A  +   + T
Sbjct: 51  FYRDEPVRWARDRLGGVHLWSKQQEIINALRVHRKVAVPSCHDAGKSFVAAAAVAHWLDT 110

Query: 105 RPGMS--IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
            P  S   I  A +  Q++  LW E+ +   +                +     + +   
Sbjct: 111 HPPGSAFAITTAPTFPQVRAILWREIRRLSRL---------------MNPPLGRVNQTEW 155

Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222
            ID        R  ++     F G H  +   V  DEA G P  +  +     T  N   
Sbjct: 156 LIDD-DLVAFGRKPADHDEGGFQGIHAQYP-LVVLDEAGGIPQQLWIAADSIATNENARI 213

Query: 223 FWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG--------------FHEG 268
                 N      +F  +  +P   W    I                         + E 
Sbjct: 214 L--AIGNPDDPTSYFAQVCELPS--WHVITIPAAETPAFTGEQIPDDLRQALLSRAWAEE 269

Query: 269 IISRYGLDSDVARIEILGQFPQQEVNNFI-PHNYIEEAMSREAIDDLYA--PLIMGCDIA 325
               +G D+ V   ++L QFP+      I   +  +  + R+         P+ +G D+ 
Sbjct: 270 KRREWGEDNPVYISKVLAQFPKDVAWKVIKASDVAKRRIGRDEPWPASKLRPVCLGVDV- 328

Query: 326 GEGGDKTVVVFRRGNIIEHIFDWSAK 351
           GEG D TVV  RRG  ++   +W A+
Sbjct: 329 GEGRDWTVVRERRG--VQAGREWQAR 352


>gi|326782863|ref|YP_004323261.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
           P-RSM4]
 gi|310004122|gb|ADO98516.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
           P-RSM4]
          Length = 547

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 45/355 (12%), Positives = 97/355 (27%), Gaps = 54/355 (15%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEA 61
           P L   +  ++ +  E+    +C      F+  +       + L  F             
Sbjct: 9   PNLKKVNTSIDFKPEEVAEVLKCQDDPIYFIKNYIKIVSLDEGLVPF------------N 56

Query: 62  VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121
           +       V+  +   F  A    R  GK+T+    +LW +     +++  +AN     +
Sbjct: 57  MYHFQEEMVSKFHDHRFNIA-KLPRQSGKSTIVTAYLLWYVLFNANVNVAILANKAATAR 115

Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
             L                   ++L         +    S+ +++    +   T      
Sbjct: 116 EMLQRL------------QLSYENLPNWMQQGILQWNRGSLELENGSKIMAAST------ 157

Query: 182 DTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
            +           +F DE +  P    D    S+    +        ++  +T      F
Sbjct: 158 -SASAVRGMSFNVIFLDEFAFIPNHIADQFFSSVYPTISSG--KSTKVIIISTPHGMNMF 214

Query: 238 YDIFNIPL---EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294
           Y +++       ++   ++    V G D  + E  I          R+E   +F      
Sbjct: 215 YKLWHDAERGTNEYVPTEVHWSEVPGRDDVWKEQTIKNTSESQ--FRVEFECEFLGSVDT 272

Query: 295 NFIPHNY--------IEEAMSREAIDD--LYAPLIMGCDIAGE-GGDKTVVVFRR 338
              P           I         +        I+  D++   G D +      
Sbjct: 273 LIAPSKLRIMPYHDPITSNRGLAVYEQVIPEHNYIITVDVSRGVGNDYSAFCVID 327


>gi|153806881|ref|ZP_01959549.1| hypothetical protein BACCAC_01156 [Bacteroides caccae ATCC 43185]
 gi|149131558|gb|EDM22764.1| hypothetical protein BACCAC_01156 [Bacteroides caccae ATCC 43185]
          Length = 513

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 55/361 (15%), Positives = 115/361 (31%), Gaps = 67/361 (18%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP------ 106
           ++  + + A        +  S       A+++G   GK  + A   L  +   P      
Sbjct: 24  KFVRDALCARLDREQQAIIESVQHNPMTAVASGTARGKDFVAACASLCFMYLTPRFNEKG 83

Query: 107 ----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
                  +   A +  Q+KN +  E+ + +     +  F               L+   +
Sbjct: 84  VLVGNTKVAMTAPTGRQVKNIMTPEIRRLIRAARTKFPFCC----------PGRLVADDI 133

Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222
             D + + +T     +   +++ G H  + M V   EASG  +I+  +I G     +   
Sbjct: 134 RTDYEEWFLTGFKADDNATESWSGFHAANTMFVI-TEASGISEIVYNAIEGNLQGNSR-- 190

Query: 223 FWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI-----------DSGFHEG--- 268
             ++  N     G+         + + ++++ +   E +           D  + +    
Sbjct: 191 -MLIVFNPNITTGYAARAM--KSDRFAKFRLSSLNAENVVKKQIVIPGQVDYEWVKDKVI 247

Query: 269 -------------------IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309
                                 +    +D+ R+++LG FP+   +  IP+ +IE A    
Sbjct: 248 NWCSPIQQTDFNEGEGDFNWEGKLYRPNDLFRVKVLGMFPKVSEDVLIPYEWIEIANRNW 307

Query: 310 AIDD-----LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS---AKLIQETNQEGC 361
                          +G D+AG G D +V+  R GN +                      
Sbjct: 308 QELQASGFIPAKSCKLGVDVAGMGRDNSVLCPRYGNYVPQFDVHQSAGRADHMHVVGMTI 367

Query: 362 P 362
           P
Sbjct: 368 P 368


>gi|261402679|ref|YP_003246903.1| protein of unknown function DUF264 [Methanocaldococcus vulcanius
           M7]
 gi|261369672|gb|ACX72421.1| protein of unknown function DUF264 [Methanocaldococcus vulcanius
           M7]
          Length = 437

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 53/324 (16%), Positives = 103/324 (31%), Gaps = 50/324 (15%)

Query: 23  ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82
           +    F+ FV         G  L      H+ Q E ++A            +       +
Sbjct: 12  KLRTDFEFFVKTV-----LGAEL------HKAQKEIVKAF----------FSGKYKTIIV 50

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
           +AGR  GK+ L  +++++L  T+       IA      +  ++ E+  ++         +
Sbjct: 51  AAGRRFGKSKLMCFLLIFLSCTQKDKKFAVIAPYYANAR-IIFKELRTYIEKNKT---LQ 106

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
                +  S +     +    ID +              D            V  DEA+ 
Sbjct: 107 KLVKRITESPYMVIEFKTGCIIDFRS------------ADNPTSIRGESYHLVILDEAAF 154

Query: 203 TPDI-INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NIPLEDWKRYQIDTRTV 258
             D  +   I     + +     I   +T   +  FY+ F            ++  T + 
Sbjct: 155 IKDDVVKYVIKPLLIDYDAPLIEI---STPNGHNHFYESFLMGENRQNRHISFRFPTWSN 211

Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID----DL 314
             +     E I   +G DS V + E   +F   + +      YI++ +          + 
Sbjct: 212 PFLPKSVIEEIKREFGEDSLVWKQEFCAEFID-DQDAVFKWEYIQQCIDSNIELLTVGEK 270

Query: 315 YAPLIMGCDIAGEGGDKTVVVFRR 338
               +MG D+A    D TV++   
Sbjct: 271 GHRYVMGVDLAKY-QDYTVIIILD 293


>gi|299769795|ref|YP_003731821.1| hypothetical protein AOLE_07785 [Acinetobacter sp. DR1]
 gi|298699883|gb|ADI90448.1| hypothetical protein AOLE_07785 [Acinetobacter sp. DR1]
          Length = 668

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 90/259 (34%), Gaps = 18/259 (6%)

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
              GKT     + LW +       ++  A    QLK  +W E+S  L+ L          
Sbjct: 208 HNTGKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEISINLARLKQGPLA---- 263

Query: 146 LSLHPSGWY-AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                + +   +     +    + + +  +T  + +P    G H  + M V+ DEASG  
Sbjct: 264 ---WLADYVGYQSELVYIKGYKEKWYVFAKTAPKHQPTNLAGNHGDNYM-VWVDEASGVD 319

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED----WKRYQIDTRTVEG 260
           D +     G  T  +       TS   R  G FY+  +         W     +      
Sbjct: 320 DAVLDVAFGALTHEDNRAVM--TSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGEESPL 377

Query: 261 IDSGFHEGIISRYG-LDSDVARIEILGQFPQQEVNNFIPHNYIEEA-MSREAIDDLYAPL 318
           +     E    +YG  D    +I +LG+FP       I     EE  +     DD     
Sbjct: 378 VSKQSLEEQRQKYGSRDDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDHQFGY 437

Query: 319 IMGCDIAGE-GGDKTVVVF 336
           I+  D+ G  G D +V+V 
Sbjct: 438 IITVDVGGGVGRDDSVIVI 456


>gi|323516996|gb|ADX91377.1| hypothetical protein ABTW07_0941 [Acinetobacter baumannii
           TCDC-AB0715]
 gi|323518424|gb|ADX92805.1| hypothetical protein ABTW07_2381 [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 663

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 90/259 (34%), Gaps = 18/259 (6%)

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
              GKT     + LW +       ++  A    QLK  +W E+S  L+ L          
Sbjct: 208 HNTGKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEISINLARLKQGPLA---- 263

Query: 146 LSLHPSGWY-AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                + +   +     +    + + +  +T  + +P    G H  + M V+ DEASG  
Sbjct: 264 ---WLADYVGYQSELVYIKGYKEKWYVFAKTAPKHQPTNLAGNHGDNYM-VWVDEASGVD 319

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED----WKRYQIDTRTVEG 260
           D +     G  T  +       TS   R  G FY+  +         W     +      
Sbjct: 320 DAVLDVAFGALTHEDNRAVM--TSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGEESPL 377

Query: 261 IDSGFHEGIISRYG-LDSDVARIEILGQFPQQEVNNFIPHNYIEEA-MSREAIDDLYAPL 318
           +     E    +YG  +    +I +LG+FP       I     EE  +     DD     
Sbjct: 378 VSKQSLEEQRQKYGSREDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDHQFGY 437

Query: 319 IMGCDIAGE-GGDKTVVVF 336
           ++  D+ G  G D +V+V 
Sbjct: 438 VITVDVGGGVGRDDSVIVV 456


>gi|61806303|ref|YP_214662.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
           P-SSM4]
 gi|61563847|gb|AAX46902.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
           P-SSM4]
          Length = 550

 Score =  145 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/371 (11%), Positives = 105/371 (28%), Gaps = 59/371 (15%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + +   + Q  ++++ E +  A+       F+ ++       + +  F            
Sbjct: 14  LKKANVSTQFTKKQVAEYMKCAQ---DPVYFIRKYIRIVSLDEGVIPFD----------- 59

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +       V   +   F  A    R  GK+T+    +LW +     +++  +AN     
Sbjct: 60  -MYNFQEDMVTKFHQHRFNIA-KLPRQSGKSTIVTAYLLWYVLFNANVNVAILANKAPTA 117

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           +  L                   ++L            + S+ +++    +   T     
Sbjct: 118 REMLGRL------------QLSYENLPKWMQQGILGWNKGSLELENGSKILASST----- 160

Query: 181 PDTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
             +           +F DE +  P    +    S+    +        ++  +T      
Sbjct: 161 --SASAVRGMSFNIIFLDEFAFVPNHIAEQFFASVYPTISSG--KSTKVIIISTPHGMNQ 216

Query: 237 FYDIFNIP---LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293
           FY +++       ++   ++    V G D  + +  I          R+E   +F     
Sbjct: 217 FYKLWHDAERGANNYVATEVHWSQVPGRDDKWKQQTIENTSE--AQFRVEFECEFLGSVD 274

Query: 294 NNFIPHNY--------IEEAMSREAIDD--LYAPLIMGCDIAGE-GGDKTVVVFRRGNII 342
               P           I+E       +        I+  D++   G D +         +
Sbjct: 275 TLITPSKLRIMPYKDPIQENRGLAVYEHVQENHNYIITVDVSRGVGNDYSAFCVIDTTTV 334

Query: 343 --EHIFDWSAK 351
             + +  +   
Sbjct: 335 PYKVVARYKNN 345


>gi|332852816|ref|ZP_08434408.1| intein splicing region-containing protein [Acinetobacter baumannii
           6013150]
 gi|332871045|ref|ZP_08439658.1| intein splicing region-containing protein [Acinetobacter baumannii
           6013113]
 gi|332729027|gb|EGJ60377.1| intein splicing region-containing protein [Acinetobacter baumannii
           6013150]
 gi|332731805|gb|EGJ63085.1| intein splicing region-containing protein [Acinetobacter baumannii
           6013113]
          Length = 663

 Score =  145 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 53/259 (20%), Positives = 90/259 (34%), Gaps = 18/259 (6%)

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
              GKT     + LW +       ++  A    QLK  +W E+S  L+ L          
Sbjct: 208 HNTGKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEISINLARLKQGPLA---- 263

Query: 146 LSLHPSGWY-AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                + +   +     +    + + +  +T  + +P    G H  + M V+ DEASG  
Sbjct: 264 ---WLADYVGYQSELVYIKGYKEKWYVFAKTAPKHQPTNLAGNHGDNYM-VWVDEASGVD 319

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED----WKRYQIDTRTVEG 260
           D +     G  T  +       TS   R  G FY+  +         W     +      
Sbjct: 320 DAVLDVAFGALTHEDNRAVM--TSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGEESPL 377

Query: 261 IDSGFHEGIISRYG-LDSDVARIEILGQFPQQEVNNFIPHNYIEEA-MSREAIDDLYAPL 318
           +     +    +YG  +    +I +LG+FP       I     EE  +     DD     
Sbjct: 378 VSEQSLQEQRQKYGSREDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDHQFGY 437

Query: 319 IMGCDIAGE-GGDKTVVVF 336
           ++  D+ G  G D +V+V 
Sbjct: 438 VITVDVGGGVGRDDSVIVV 456


>gi|260551382|ref|ZP_05825582.1| phage terminase [Acinetobacter sp. RUH2624]
 gi|260405545|gb|EEW99037.1| phage terminase [Acinetobacter sp. RUH2624]
          Length = 663

 Score =  145 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 53/259 (20%), Positives = 90/259 (34%), Gaps = 18/259 (6%)

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
              GKT     + LW +       ++  A    QLK  +W E+S  L+ L          
Sbjct: 208 HNTGKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEISINLARLKQGPLA---- 263

Query: 146 LSLHPSGWY-AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                + +   +     +    + + +  +T  + +P    G H  + M V+ DEASG  
Sbjct: 264 ---WLADYVGYQSELVYIKGYKEKWYVFAKTAPKHQPTNLAGNHGDNYM-VWVDEASGVD 319

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED----WKRYQIDTRTVEG 260
           D +     G  T  +       TS   R  G FY+  +         W     +      
Sbjct: 320 DAVLDVAFGALTHEDNRAVM--TSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGEESPL 377

Query: 261 IDSGFHEGIISRYG-LDSDVARIEILGQFPQQEVNNFIPHNYIEEA-MSREAIDDLYAPL 318
           +     +    +YG  +    +I +LG+FP       I     EE  +     DD     
Sbjct: 378 VSEQSLQEQRQKYGSREDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDHQFGY 437

Query: 319 IMGCDIAGE-GGDKTVVVF 336
           ++  D+ G  G D +V+V 
Sbjct: 438 VITVDVGGGVGRDDSVIVV 456


>gi|213156231|ref|YP_002318651.1| phage terminase [Acinetobacter baumannii AB0057]
 gi|301346399|ref|ZP_07227140.1| phage terminase [Acinetobacter baumannii AB056]
 gi|301594275|ref|ZP_07239283.1| phage terminase [Acinetobacter baumannii AB059]
 gi|213055391|gb|ACJ40293.1| phage terminase [Acinetobacter baumannii AB0057]
          Length = 663

 Score =  145 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 53/259 (20%), Positives = 90/259 (34%), Gaps = 18/259 (6%)

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
              GKT     + LW +       ++  A    QLK  +W E+S  L+ L          
Sbjct: 208 HNTGKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEISINLARLKQGPLA---- 263

Query: 146 LSLHPSGWY-AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                + +   +     +    + + +  +T  + +P    G H  + M V+ DEASG  
Sbjct: 264 ---WLADYVGYQSELVYIKGYKEKWYVFAKTAPKHQPTNLAGNHGDNYM-VWVDEASGVD 319

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED----WKRYQIDTRTVEG 260
           D +     G  T  +       TS   R  G FY+  +         W     +      
Sbjct: 320 DAVLDVAFGALTHEDNRAVM--TSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGEESPL 377

Query: 261 IDSGFHEGIISRYG-LDSDVARIEILGQFPQQEVNNFIPHNYIEEA-MSREAIDDLYAPL 318
           +     +    +YG  +    +I +LG+FP       I     EE  +     DD     
Sbjct: 378 VSEQSLQEQRQKYGSREDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDHQFGY 437

Query: 319 IMGCDIAGE-GGDKTVVVF 336
           ++  D+ G  G D +V+V 
Sbjct: 438 VITVDVGGGVGRDDSVIVV 456


>gi|184158505|ref|YP_001846844.1| hypothetical protein ACICU_02185 [Acinetobacter baumannii ACICU]
 gi|183210099|gb|ACC57497.1| hypothetical protein ACICU_02185 [Acinetobacter baumannii ACICU]
          Length = 663

 Score =  145 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 53/259 (20%), Positives = 90/259 (34%), Gaps = 18/259 (6%)

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
              GKT     + LW +       ++  A    QLK  +W E+S  L+ L          
Sbjct: 208 HNTGKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEISINLARLKQGPLA---- 263

Query: 146 LSLHPSGWY-AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                + +   +     +    + + +  +T  + +P    G H  + M V+ DEASG  
Sbjct: 264 ---WLADYVGYQSELVYIKGYKEKWYVFAKTAPKHQPTNLAGNHGDNYM-VWVDEASGVD 319

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED----WKRYQIDTRTVEG 260
           D +     G  T  +       TS   R  G FY+  +         W     +      
Sbjct: 320 DAVLDVAFGALTHEDNRAVM--TSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGEESPL 377

Query: 261 IDSGFHEGIISRYG-LDSDVARIEILGQFPQQEVNNFIPHNYIEEA-MSREAIDDLYAPL 318
           +     +    +YG  +    +I +LG+FP       I     EE  +     DD     
Sbjct: 378 VSEQSLQEQRQKYGSREDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDHQFGY 437

Query: 319 IMGCDIAGE-GGDKTVVVF 336
           ++  D+ G  G D +V+V 
Sbjct: 438 VITVDVGGGVGRDDSVIVV 456


>gi|326782611|ref|YP_004323017.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
           S-SM1]
 gi|310002825|gb|ADO97224.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
           S-SM1]
          Length = 549

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/356 (12%), Positives = 97/356 (27%), Gaps = 57/356 (16%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + +  +       E+ E++   +C      F+ ++       K L  F            
Sbjct: 13  LKKANTALDFTPDEVQEVI---KCSEDPVYFIKKYIKIVSLDKGLIPFD----------- 58

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +       V   +   F  A    R  GK+T+    +LW +     +++  +AN     
Sbjct: 59  -MYHFQEEMVQKFHDNRFNIA-KLPRQSGKSTIVTSYLLWYVLFNDNVNVAILANKAATA 116

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           +  L                   ++L         +    S+ +++    +   T     
Sbjct: 117 REMLQRL------------QLSYENLPKWLQQGILQWNRGSLELENGSKIMAAST----- 159

Query: 181 PDTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
             +           +F DE +  P    D    S+    +        ++  +T      
Sbjct: 160 --SASAVRGMSFNVIFLDEFAFIPNHIADQFFSSVYPTISSG--KSTKVIIISTPHGMNM 215

Query: 237 FYDIFNIPL---EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293
           FY +++       ++   ++    V G D  + E  I          R+E   +F     
Sbjct: 216 FYKLWHDAERGTNEYIPTEVHWSEVPGRDDVWKEQTIKNTSEQQ--FRVEFECEFLGSVD 273

Query: 294 NNFIPHNYIEEAMSREAIDD----------LYAPLIMGCDIAGE-GGDKTVVVFRR 338
               P             ++               ++  D++   G D +      
Sbjct: 274 TLISPSKLRIMPYHDPMKENRGLAIFEQSIPDHNYVITVDVSRGVGNDYSAFCVMD 329


>gi|326782381|ref|YP_004322781.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
           S-ShM2]
 gi|310003329|gb|ADO97726.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
           S-ShM2]
          Length = 362

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/378 (12%), Positives = 103/378 (27%), Gaps = 60/378 (15%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEA 61
           P L   +  +E    ++   A+C      F+  +         L  F             
Sbjct: 11  PNLKKANTSIEFTNDQISEFAKCYNDPVYFIKNYVKIVSLDAGLIPFD------------ 58

Query: 62  VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121
           +       V   +   F  A    R  GK+T+    +LW +     +++  +AN     +
Sbjct: 59  MYHFQEEMVQKFHDNRFNIA-KLPRQSGKSTIVTSYLLWYVIFNDNVNVAILANKAATSR 117

Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
             L                   ++L         +    S+ +++    +   T S    
Sbjct: 118 EMLQRLQR------------SYENLPKWLQQGIVQWNRGSLELENGSKIMAASTSS---- 161

Query: 182 DTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
                        +F DE +  P    D    S+    +        ++  +T      F
Sbjct: 162 ---SAVRGMSFNVIFLDEFAFVPNHIADEFFSSVYPTISSG--KSTKVIIISTPHGMNMF 216

Query: 238 YDIFN---IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294
           Y +++       ++   ++    V G D+ +    I+         ++E   +F      
Sbjct: 217 YKLWHDSERKKNEYISTEVHWSEVPGRDAKWKAQTIANTSEQQ--FKVEFECEFLGSVDT 274

Query: 295 NFIPHNYI----------EEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVFRRGNIIE 343
              P               + +S           ++  D+A    GD +        ++ 
Sbjct: 275 LISPSKLRTMVYNDPLVQNKGLSIYEHVQKDHNYVITVDVARGVSGDFSAF------VVI 328

Query: 344 HIFDWSAKLIQETNQEGC 361
                  KL+ +      
Sbjct: 329 DTTTIPYKLVAKYKNNTI 346


>gi|326784324|ref|YP_004324722.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
           S-SSM5]
 gi|310003555|gb|ADO97951.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
           S-SSM5]
          Length = 549

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 99/356 (27%), Gaps = 57/356 (16%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + +  +       E+ E+L  +E       F+  +       K L  F            
Sbjct: 13  LKKANTAIDFTPDEVAEVLRCSE---DPVYFIKNYIKIVSLDKGLIPFD----------- 58

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +       V+  +   F  A    R  GK+T+    +LW +   P +++  +AN     
Sbjct: 59  -MYHFQEEMVSKFHAERFNIA-KLPRQSGKSTIVTSYLLWYVLFNPNVNVAILANKAATA 116

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           +  L                   ++L         +    S+ +++    +   T     
Sbjct: 117 REMLQRL------------QLSYENLPKWLQQGILQWNRGSLELENGSKIMAAST----- 159

Query: 181 PDTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
             +           +F DE +  P    D    S+    +        ++  +T      
Sbjct: 160 --SASAVRGMSFNVIFLDEFAFIPNHIADQFFSSVYPTISSG--KSTKVIIISTPHGMNM 215

Query: 237 FYDIFNIP---LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293
           FY +++       ++   ++    V G D  + E  I          R+E   +F     
Sbjct: 216 FYKLWHDAERGSNEYVPTEVHWSEVPGRDEVWKEQTIKNTSEQQ--FRVEFECEFLGSVD 273

Query: 294 NNFIPHNY--------IEEAMSREAIDD--LYAPLIMGCDIAGE-GGDKTVVVFRR 338
               P           + +       +        I+  D++   G D +      
Sbjct: 274 TLISPSKLRIMPYHEPMNQNRGLAVFEQAIPEHNYILTVDVSRGVGNDYSAFTVMD 329


>gi|303243859|ref|ZP_07330199.1| protein of unknown function DUF264 [Methanothermococcus okinawensis
           IH1]
 gi|302485795|gb|EFL48719.1| protein of unknown function DUF264 [Methanothermococcus okinawensis
           IH1]
          Length = 445

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 51/291 (17%), Positives = 96/291 (32%), Gaps = 30/291 (10%)

Query: 60  EAVDVHCHSNVNNSNPTIFK-CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           E +       ++      +K   ++AGR  GK+ L A+++++L ST+       IA    
Sbjct: 33  EKLHSAQQKIIDAYISKKYKTIIVAAGRRFGKSKLMAFLLIFLCSTQKNKKYAVIAPFYA 92

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
             +  ++ E+ K++      +        +  S + A   +    ID +           
Sbjct: 93  NAR-IIFRELKKYIEK---SNVLSRLVKRMVESPYMAIEFKTGCTIDFRS---------- 138

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDI-INKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
              D            V  DEA+   D  +   I     + +     I   +T   +  F
Sbjct: 139 --ADNPTSIRGESYHLVILDEAAFIKDDVVKYVIKPLLLDYDAPLIEI---STPNGHNHF 193

Query: 238 YDIF---NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294
           Y+ F            ++  T T   +     E I    G DS V + E   +F      
Sbjct: 194 YESFLMGKNKQNRHISFRFPTWTNPFLPKNAIEEIKQEVGEDSPVWKQEYCAEFIDNNE- 252

Query: 295 NFIPHNYIEEAMSREAID----DLYAPLIMGCDIAGEGGDKTVVVFRRGNI 341
                 YI++ +          +     +MG D+A    D TV+     ++
Sbjct: 253 AVFNWEYIQQCIDGTIKLLKSGESGHQYVMGVDLAKF-EDYTVITVLDVSV 302


>gi|326783331|ref|YP_004323723.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
           Syn33]
 gi|310005278|gb|ADO99667.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
           Syn33]
          Length = 549

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/370 (12%), Positives = 105/370 (28%), Gaps = 56/370 (15%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEA 61
           P L   +   E    E+  + +C     +F++ +       + +  F+            
Sbjct: 11  PNLKKANIAQEFSPEEVQEYLKCADDPVHFILNYIKIVSLDEGVIPFT------------ 58

Query: 62  VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121
           +       V + +   F  A    R  GK+T+    +LW +   P +++  +AN     +
Sbjct: 59  MYDFQVDMVKSFHDNRFNIA-KLPRQSGKSTIVTAYLLWYVLFNPNVNVAILANKAATAR 117

Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
             L                   ++L         +    S+ +++    +   T      
Sbjct: 118 EMLGRL------------QLSYENLPKWLQQGILQWNRGSLELENGSKILAAST------ 159

Query: 182 DTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
            +           +F DE +  P    D    S+    +        ++  +T      F
Sbjct: 160 -SASAVRGMSFNVIFLDEFAFVPNHIADQFFSSVYPTVSSG--KSTKVIIISTPHGMNMF 216

Query: 238 YDIFNIP---LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294
           Y +++       ++   ++    V G D+ + E  I          ++E   +F      
Sbjct: 217 YKLWHDAEQGKNEYLPTEVHWSQVPGRDAAWKEQTIKNTSEQQ--FKVEFECEFLGSVDT 274

Query: 295 NFIPHNYIEEAMSREA----------IDDLYAPLIMGCDIAGE-GGDKTVVVFRRGNII- 342
              P                        +     I+  D++   G D +  V      + 
Sbjct: 275 LISPSKLRTMPYVDPVAQNKGLAIYERVEAEHNYIITVDVSRGIGNDYSAFVVVDTTTMP 334

Query: 343 -EHIFDWSAK 351
            + +  +   
Sbjct: 335 YKVVARYRNN 344


>gi|189460514|ref|ZP_03009299.1| hypothetical protein BACCOP_01155 [Bacteroides coprocola DSM 17136]
 gi|189432758|gb|EDV01743.1| hypothetical protein BACCOP_01155 [Bacteroides coprocola DSM 17136]
          Length = 556

 Score =  143 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 60/362 (16%), Positives = 124/362 (34%), Gaps = 72/362 (19%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP------ 106
           R+  E +          + +S     + ++++G   GK  + A   +  +   P      
Sbjct: 54  RFVREALGVTLDKEQQEILSSVQYNRRTSVASGTARGKDFVAACAAICFLYLTPRWRKNS 113

Query: 107 --------GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
                      +   A ++ Q+KN +  E+S+  +    R    +  L+ +         
Sbjct: 114 LGEIELVENTKVALTAPTDRQVKNIMMPEISRLFNRAKARGVELIGKLNAY--------- 164

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218
              +  ++  + +T     E   + + G H  H M     EA+G  D    +I G     
Sbjct: 165 --DIRTNNDEWFLTGFKADEHNHEAWSGFHAVHTMF-VVTEATGIGDDTFAAIEGNLQGD 221

Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG-----------IDSGFHE 267
           +     ++  N  +  G+     +   + W +Y++++ T              +D  +  
Sbjct: 222 SR---ILLVFNPNKTVGYAAK--SQKGDRWHKYRLNSLTAPNIASKKIIIPGQVDYDWVL 276

Query: 268 GIIS----------------------RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA 305
             +                       ++    D+ R ++LG FP+ + +  IP  ++EEA
Sbjct: 277 DKLENWCEKISPDEIISEMDDFEFEGQWYRPEDLFRKKVLGLFPKVDEDTLIPRQWLEEA 336

Query: 306 MSREAIDDLYAPL-----IMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA---KLIQETN 357
             R        PL     I+G D+AG G D T  V RR N +      ++       +  
Sbjct: 337 HERWKQAKGREPLRADLNILGVDVAGMGRDATCYVLRRDNWVASFDTHNSGGVADHMKVA 396

Query: 358 QE 359
            +
Sbjct: 397 GK 398


>gi|284162607|ref|YP_003401230.1| hypothetical protein Arcpr_1511 [Archaeoglobus profundus DSM 5631]
 gi|284012604|gb|ADB58557.1| protein of unknown function DUF264 [Archaeoglobus profundus DSM
           5631]
          Length = 435

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 62/355 (17%), Positives = 116/355 (32%), Gaps = 68/355 (19%)

Query: 10  KLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSN 69
           K ++EL + ++          F   F  WG            H  Q + +          
Sbjct: 2   KTDKELKKKVLS-----DPVTFAKVFLDWGA-----------HPAQAQILRDRHQF---- 41

Query: 70  VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129
                       + AGR  GKT   A   ++   T PG     IA S  Q  N ++ ++ 
Sbjct: 42  ----------ITVVAGRRFGKTECMAVSAIYYALTNPGSIQFVIAPSYDQ-SNIMFGQIV 90

Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189
           ++LS              ++ + ++  + +    I ++                      
Sbjct: 91  QFLSKSILGCMIR----RIYKTPFHHIIFKNDSVIHARS------------ASKPEFLRG 134

Query: 190 THGMAVFNDEASGTPDIIN-KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-- 246
                +  DEA+  PD +    I     + N +  WI           FYD +       
Sbjct: 135 HKAHRIILDEAAFIPDDVISNIIEPMLADYNGS--WIKIGTP-FGKNHFYDTYLKGQSPD 191

Query: 247 --DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE 304
             D+  Y+  +     I   F E     YG +S + R E L +F + + N       I++
Sbjct: 192 FPDYSSYRFPSTVNPHISHEFIEKKKREYGENSIIFRTEYLAEFVE-DQNAVFRWADIQK 250

Query: 305 AMSREAI-----DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354
            +          +++    ++GCD+A    D TV+      ++  + +   KL+ 
Sbjct: 251 NVDNSIELIDSAENVSKQYVIGCDLAKY-QDYTVI------VVLDVTEKPYKLVH 298


>gi|326784094|ref|YP_004324487.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
           Syn1]
 gi|310004826|gb|ADO99217.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
           Syn1]
          Length = 550

 Score =  142 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/367 (11%), Positives = 103/367 (28%), Gaps = 63/367 (17%)

Query: 11  LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70
             +++ E +   +C      F   +       + L  F             +       +
Sbjct: 23  TPEQVKEFI---KCKNDPIYFTKTYVQIVSLDEGLVPFK------------MWDFQEELI 67

Query: 71  NNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK 130
              + + F  A    R  GK+T     +L  +     +++  +AN  +  ++ L    + 
Sbjct: 68  RKFHKSRFNIA-KLPRQTGKSTTVVSYLLHYLIFNDSVNVGILANKASTARDLLARLAT- 125

Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
                        ++L            + ++ +++    +   T       +       
Sbjct: 126 -----------AYENLPKWIQQGVVVWNKGNIELENGSKILAAST-------SASAVRGM 167

Query: 191 HGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP-- 244
               +F DE +  P    D    S+    T        ++  +T +    FY ++     
Sbjct: 168 SFNIIFLDEFAFVPNHIADSFFASVYPTITSG--KSTKVIIISTPQGMNHFYKMWQDAVN 225

Query: 245 -LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY-- 301
              D+  +++    V G D+ + E  I            E   +F               
Sbjct: 226 GRNDYTYHEVHWSQVPGRDAKWKEETIKNTS--QRQFTQEFECEFLGSVDTLISASKLKA 283

Query: 302 --IEEAMSRE------AIDDLYAPLIMGCDIAGE-GGDKTVVVFRRGNIIEHIFDWSAKL 352
              +E ++R                ++  D++   GGD +  +         I     K+
Sbjct: 284 LAFDEPITRNKGLDIYEKPKDKNEYLLTVDVSRGIGGDYSAFIVYD------ITTVPYKI 337

Query: 353 IQETNQE 359
           + +    
Sbjct: 338 VGKYRNN 344


>gi|326783550|ref|YP_004323947.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
           Syn19]
 gi|310005053|gb|ADO99443.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
           Syn19]
          Length = 549

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/349 (12%), Positives = 93/349 (26%), Gaps = 56/349 (16%)

Query: 23  ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82
           +C      F+  +       K L  F             +       V   +   F  A 
Sbjct: 32  KCSEDPVYFIKTYIKIVSLDKGLIPFD------------MYHFQEEMVEKFHDNRFNIA- 78

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
              R  GK+T+    +LW +     +++  +AN     +  L                  
Sbjct: 79  KLPRQSGKSTIVTSYLLWYVLFNQNVNVAILANKAATSREMLQRL------------QLS 126

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
            ++L         +    S+ +++    +   T S                 +F DE + 
Sbjct: 127 YENLPKWLQQGILQWNRGSLELENGSKIMAASTSS-------SAVRGMSFNVIFLDEFAF 179

Query: 203 TP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP---LEDWKRYQIDT 255
            P    D    S+    +     +  ++  +T      FY +++       ++   ++  
Sbjct: 180 VPNHIADQFFSSVYPTISSGQSTK--VIIISTPHGMNMFYKLWHDAERSKNEYIPTEVHW 237

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--- 312
             V G D+ + E  I+         ++E   +F         P                 
Sbjct: 238 SEVPGRDAKWKEQTIANTSEQQ--FKVEFECEFLGSVDTLISPSKLRVMPYHDPIAQNKG 295

Query: 313 -------DLYAPLIMGCDIAG-EGGDKTVVVFRRGNII--EHIFDWSAK 351
                  +     I+  D+A     D +         +  E +  +   
Sbjct: 296 LAVYKRAEPDHNYIITVDVARGTSNDYSAFCVMDTTTVPYEMVARYRNN 344


>gi|58532911|ref|YP_195134.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
           S-PM2]
 gi|58331378|emb|CAF34164.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
           S-PM2]
          Length = 548

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 41/350 (11%), Positives = 98/350 (28%), Gaps = 58/350 (16%)

Query: 23  ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82
           +C      F   +       + L  F             +       +   +   F  A 
Sbjct: 32  KCANDPVYFTKNYVKIVSLDEGLVPFK------------MWDFQEELIMKFHKNRFNIA- 78

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
              R  GK+T     +L  +     ++I  +AN  +  ++ L    +             
Sbjct: 79  KLPRQTGKSTTVVSYLLHYLIFNDNVNIGILANKASTARDLLARLAT------------A 126

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
            ++L            + ++ +++    +   T       +           +F DE + 
Sbjct: 127 YENLPKWIQQGVVVWNKGNIELENGSKILAAST-------SASAVRGMSFNIIFLDEFAF 179

Query: 203 TP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NIPLEDWKRYQIDT 255
            P    D    S+    T        ++  +T +    FY ++         +  +++  
Sbjct: 180 VPNHIADSFFASVYPTITSG--KSTKVIIISTPQGMNHFYKMWVDATNGRNGYTFHEVHW 237

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA----- 310
             V G D  + E  I            E   +F    V+  I  + ++  +  +      
Sbjct: 238 SQVPGRDEKWKEETIKNTSERQ--FTQEFECEFL-GSVDTLIAASKLKALVFNDPIKRNK 294

Query: 311 ------IDDLYAPLIMGCDIAGE-GGDKTVVVFRRGNII--EHIFDWSAK 351
                      +  +M  D++   GGD +  +      +  + +  +   
Sbjct: 295 GLDIYEEPKEKSEYLMTVDVSRGIGGDYSAFIIFDITTVPYKVVGKYRNN 344


>gi|298387330|ref|ZP_06996883.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
 gi|298259999|gb|EFI02870.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
          Length = 500

 Score =  139 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 61/339 (17%), Positives = 111/339 (32%), Gaps = 67/339 (19%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---------- 106
           + + A        V  S       A+++G   GK  + A   L  +   P          
Sbjct: 22  DVLRANLDEEQKAVLRSVQKNPMTALASGTSRGKDFVAACAALCFMYLTPEWDDDGNLIR 81

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
              I   A S+ Q++N +  EV +                          L+   +  D 
Sbjct: 82  NTKIALSAPSQRQVENIMTPEVRRLFRNAG---------------ILPGRLVANDIRTDY 126

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
           + Y +T      +  + + G H  + M V   EASG  + I  +I G     +       
Sbjct: 127 EEYFLTGFKADNKNQEVWSGFHAANVMFVI-TEASGVSETIFSAIEGNLQGNSRLLLVF- 184

Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI-----------DSGFHEGIISRY-- 273
             N     G  Y    +  + + ++++D+     +           +  + E  +  +  
Sbjct: 185 --NPNITTG--YAANAMKSDRFAKFRLDSLNATNVTAKREIIPGQVNYEWVEDKVKHWCT 240

Query: 274 --------------------GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
                                  +D+ RI++ G FP+   +  IP+ +IE A  R   + 
Sbjct: 241 PITKEEYNEGEGDFLFENNLYRPNDLFRIKVRGMFPKVAEDVLIPYEWIEIANKRWQENH 300

Query: 314 LYAP---LIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS 349
            Y P     +G D+AG G D +V   R GN +     + 
Sbjct: 301 PYRPRKSCKLGVDVAGMGRDNSVFCPRYGNYVSQFDVFQ 339


>gi|291336011|gb|ADD95601.1| large terminase protein [uncultured phage MedDCM-OCT-S09-C7]
          Length = 526

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 48/358 (13%), Positives = 108/358 (30%), Gaps = 54/358 (15%)

Query: 9   QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68
           +  +QE+ E +   +C     +F+  +       + +  F     +Q + +E        
Sbjct: 23  KYTDQEMQEYV---KCSQDPCHFIENYTQIISLDEGMVPFK-LRGYQDKLIE-------- 70

Query: 69  NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
              + N   F   + A R  GK+  +   +LW +   P +++  +AN     +  +   V
Sbjct: 71  ---HYNSNRFNI-VLASRQSGKSITSCAYLLWFLLFNPEVTVAVLANKGAIAREMIARMV 126

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
           +             ++S+          L + S+   +    +   T S           
Sbjct: 127 T------------MLESVPFFLQPGVKILNKGSIEFANDSKVVAAATSS-------SSIR 167

Query: 189 NTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
                 ++ DE +   D     +          +   I+TS    +   FY I+   + D
Sbjct: 168 GLSINLLYLDEFAFVDDAETFYTATYPVVTSGKDSKVIITSTANGVGNMFYKIYESAVHD 227

Query: 248 ---WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIP------ 298
              +K + I+   V G D  + +  I+           E    F                
Sbjct: 228 QSEYKHFLINWFDVPGRDEEWKKETIANTSE--AQFEQEYGNSFLGTGNTLINSNTLLGL 285

Query: 299 ----HNYIEEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVVFRRGNI--IEHIFDWS 349
                ++ ++ +            I   D++ G G D +       ++     +  + 
Sbjct: 286 MSKEPDWNKDGVKVYEKPKEGHTYITTVDVSKGRGIDYSTFTIMDISVKPFRQVCTYR 343


>gi|319775727|ref|YP_004138215.1| phage terminase large subunit [Haemophilus influenzae F3047]
 gi|319896735|ref|YP_004134928.1| phage terminase large subunit [Haemophilus influenzae F3031]
 gi|317432237|emb|CBY80589.1| predicted phage terminase large subunit [Haemophilus influenzae
           F3031]
 gi|317450318|emb|CBY86534.1| predicted phage terminase large subunit [Haemophilus influenzae
           F3047]
          Length = 449

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 99/289 (34%), Gaps = 24/289 (8%)

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
           P  +K     GRG GK+   A +++  I+ R  + + C    +  + +++   ++  +  
Sbjct: 15  PCRYKILY-GGRGSGKSWGVAQLLV-EIAVRTKVRVFCGRELQNSMSDSVIKLIADTIED 72

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
           L +   FE+Q  +++     +E +   +  +                             
Sbjct: 73  LGYLEDFEVQRNAIYCLKTGSEFMFYGIKNNPN-----------------KIKSLEGIDL 115

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-PLEDWKRYQI 253
           V+ +EA    +     ++    +     +  +T N + +    Y  F I P ++    +I
Sbjct: 116 VWIEEAENVSNESWDILIPTIRKERSEIW--VTFNPKNILDPTYQRFVIAPPKNSFVRKI 173

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
           +              +      D ++ R   LG+         I   +IE A+       
Sbjct: 174 NYDENPYFPETLRLEMEECKERDYELYRHIWLGEPVADSDKVIIKPVWIECAVDAHKKLG 233

Query: 314 --LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360
                  I+G D+A +G D     F  G+++  + +W  + +  +    
Sbjct: 234 FLPAGRKIVGFDVADDGVDSNANAFVHGSVVLRVDEWRGEDVIGSADRT 282


>gi|159897183|ref|YP_001543430.1| hypothetical protein Haur_0654 [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159890222|gb|ABX03302.1| conserved hypothetical protein [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 472

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 54/352 (15%), Positives = 98/352 (27%), Gaps = 63/352 (17%)

Query: 45  LEHFSQPHRWQLEFMEAVDVHCHSNVNNSN-PTIFKCAISAGRGIGKTTLNAWMMLWLIS 103
           L +   P  +  E +  V       +  S     ++  + A   +GKT L   ++ W   
Sbjct: 2   LPYAHDPVAYAREVLGEVWWTKQELIARSLLTPPYRTLVKACHKVGKTHLGGGLVNWWYD 61

Query: 104 TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
           +     ++  A ++ Q+++ LW EV                         +       + 
Sbjct: 62  SFDPGLVLTTAPTDRQVRDLLWKEVRMQRRG----------------RAGFTGPKSPRLE 105

Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
                       ++ +  D+F G H+ H      DEA G   +  ++    F E      
Sbjct: 106 STPD---HFAHGFTAKDGDSFQGHHSPH-TLFIFDEAVGVASVFWETAESMFNEGGA--- 158

Query: 224 WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF------------------ 265
           W+   N    +   Y         W    +       I +                    
Sbjct: 159 WLAIFNPTDTSSQAYA--EELSGGWHVISMSVLEHPNILAELQGLPPPFPSAIRLSRVDT 216

Query: 266 ------------------HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
                                    +     +A   +LG++P Q  NN       + A  
Sbjct: 217 LLKKWCRALSPEEPKRATDIHWRDAWYRPGPIAEARLLGRWPSQATNNVWSDGAFQVA-E 275

Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
              +     P  +GCD+A  G D T +  RRG    +    +     ET   
Sbjct: 276 SLLLPASDEPCELGCDVARYGDDFTEIHVRRGGHSLYHEAANGWSTVETAGR 327


>gi|326784562|ref|YP_004324947.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
           P-SSM7]
 gi|310004595|gb|ADO98987.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
           P-SSM7]
          Length = 550

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/351 (12%), Positives = 95/351 (27%), Gaps = 56/351 (15%)

Query: 23  ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82
           +C      F+  +       + L  F            A+       V   +   F  A 
Sbjct: 33  KCSEDPVYFIQTYIKIVSLDRGLIPF------------AMYDFQSEMVEKFHDNRFNIA- 79

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
              R  GK+T+    +LW +  +  +++  +AN     +  L                  
Sbjct: 80  KLPRQTGKSTIVTSYLLWYVLFKANVNVAILANKAATSREMLQRL------------QLS 127

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
            ++L         +    S+ +++    +   T S                 +F DE + 
Sbjct: 128 YENLPKWLQQGILQWNRGSLELENGSKIMAASTSS-------SAVRGMSFNVIFLDEFAF 180

Query: 203 TP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP---LEDWKRYQIDT 255
            P    D    S+    +        ++  +T      FY +++       ++   ++  
Sbjct: 181 VPNHIADQFFSSVYPTISSG--KSTKVIIISTPHGMNMFYKLWHDAERGKNEYIPTEVHW 238

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA----- 310
             V G D+ + +  I+         ++E   +F         P                 
Sbjct: 239 SAVPGRDAAWKDQTIANTSEQQ--FKVEFECEFLGSVDTLISPSKLRTMPYEDPIIQNRG 296

Query: 311 -----IDDLYAPLIMGCDIAGEGG-DKTVVVFRRGNII--EHIFDWSAKLI 353
                  +     I+  D+A     D +         +  E +  +    I
Sbjct: 297 LAVYKQVEKDHNYIVTVDVARGVSQDYSAFCIIDTTTVPYELVAKYRNNDI 347


>gi|145629819|ref|ZP_01785613.1| predicted phage terminase large subunit [Haemophilus influenzae
           22.1-21]
 gi|148827544|ref|YP_001292297.1| hypothetical protein CGSHiGG_04845 [Haemophilus influenzae PittGG]
 gi|144977965|gb|EDJ87753.1| predicted phage terminase large subunit [Haemophilus influenzae
           22.1-21]
 gi|148718786|gb|ABQ99913.1| hypothetical protein CGSHiGG_04845 [Haemophilus influenzae PittGG]
          Length = 449

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 99/289 (34%), Gaps = 24/289 (8%)

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
           P  +K     GRG GK+   A +++  I+ R  + + C    +  + +++   ++  +  
Sbjct: 15  PCRYKILY-GGRGSGKSWGVAQLLV-EIAVRTKVRVFCGRELQNSMSDSVIKLIADTIED 72

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
           L +   FE+Q  +++     +E +   +  +                             
Sbjct: 73  LGYLEEFEVQRNAIYCLKTGSEFMFYGIKNNPN-----------------KIKSLEGIDL 115

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-PLEDWKRYQI 253
           V+ +EA    +     ++    +     +  +T N + +    Y  F I P ++    +I
Sbjct: 116 VWIEEAENVSNESWDILIPTIRKERSEIW--VTFNPKNILDPTYQRFVIAPPKNSFVRKI 173

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
           +              +      D ++ R   LG+         I   +IE A+       
Sbjct: 174 NYDENPYFPETLRLEMEECKERDYELYRHIWLGEPVADSDKVIIKPVWIECAVDAHKKLG 233

Query: 314 --LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360
                  I+G D+A +G D     F  G+++  + +W  + +  +    
Sbjct: 234 FLPAGRKIVGFDVADDGVDSNANAFVHGSVVLRVDEWHGEDVIGSADRT 282


>gi|260583110|ref|ZP_05850891.1| phage terminase large subunit [Haemophilus influenzae NT127]
 gi|260093822|gb|EEW77729.1| phage terminase large subunit [Haemophilus influenzae NT127]
          Length = 445

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 99/289 (34%), Gaps = 24/289 (8%)

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
           P  +K     GRG GK+   A +++  I+ R  + + C    +  + +++   ++  +  
Sbjct: 11  PCRYKILY-GGRGSGKSWGVAQLLV-EIAVRTKVRVFCGRELQNSMSDSVIKLIADTIED 68

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
           L +   FE+Q  +++     +E +   +  +                             
Sbjct: 69  LGYLEEFEVQRNAIYCLKTGSEFMFYGIKNNPN-----------------KIKSLEGIDL 111

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-PLEDWKRYQI 253
           V+ +EA    +     ++    +     +  +T N + +    Y  F I P ++    +I
Sbjct: 112 VWIEEAENVSNESWDILIPTIRKERSEIW--VTFNPKNILDPTYQRFVIAPPKNSFVRKI 169

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
           +              +      D ++ R   LG+         I   +IE A+       
Sbjct: 170 NYDENPYFPETLRLEMEECKERDYELYRHIWLGEPVADSDKVIIKPVWIECAVDAHKKLG 229

Query: 314 --LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360
                  I+G D+A +G D     F  G+++  + +W  + +  +    
Sbjct: 230 FLPAGRKIVGFDVADDGVDSNANAFVHGSVVLRVDEWHGEDVIGSADRT 278


>gi|68249883|ref|YP_248995.1| phage terminase large subunit [Haemophilus influenzae 86-028NP]
 gi|68058082|gb|AAX88335.1| predicted phage terminase large subunit [Haemophilus influenzae
           86-028NP]
          Length = 438

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 95/280 (33%), Gaps = 23/280 (8%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG GK+   A +++ +   R  + + C    +  + +++   ++  +  L +   FE+
Sbjct: 12  GGRGSGKSWGVAQLLIEIA-VRTKVRVFCGRELQNSMSDSVIKLIADTIEDLGYLEEFEV 70

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
           Q  +++     +E +   +  +                             V+ +EA   
Sbjct: 71  QRNAIYCLKTGSEFMFYGIKNNPN-----------------KIKSLEGIDLVWIEEAENV 113

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-PLEDWKRYQIDTRTVEGID 262
            +     ++    +     +  +T N + +    Y  F I P ++    +I+        
Sbjct: 114 SNESWDILIPTIRKERSEIW--VTFNPKNILDPTYQRFVIAPPKNSFVRKINYDENPYFP 171

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD--LYAPLIM 320
                 +      D ++ R   LG+         I   +IE A+              I+
Sbjct: 172 ETLRLEMEECKERDYELYRHIWLGEPVADSDKVIIKPVWIECAVDAHKKLGFLPAGRKIV 231

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360
           G D+A +G D     F  G+++  + +W  + +  +    
Sbjct: 232 GFDVADDGVDSNANAFVHGSVVLRVDEWRGEDVIGSADRT 271


>gi|329122215|ref|ZP_08250807.1| phage terminase large subunit [Haemophilus aegyptius ATCC 11116]
 gi|327474100|gb|EGF19511.1| phage terminase large subunit [Haemophilus aegyptius ATCC 11116]
          Length = 452

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 93/280 (33%), Gaps = 24/280 (8%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG GK+   A  ++    T+P + ++C    +  + +++   ++  + ML  + +F++
Sbjct: 27  GGRGSGKSFSIARALVLRAYTQP-IRVLCCREIQKSISDSVIQMLADQIEMLGLQAFFDV 85

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
           Q              +  +   +             + +       T    V+ +E    
Sbjct: 86  Q--------------KTQIIGQNGSRFTFA----GLKTNITSIKSMTGIDVVWVEEGENV 127

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262
                  ++    E       I++ N + +    Y  F   P E  K   ++ +      
Sbjct: 128 SKESWDVLIPTIREDGSQI--IVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIM 320
               E +      D ++ R    G+         I   +I+ A+              I+
Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGEPVADSDKVIIKPLWIDAAVDAHKKLGFVAAGRKII 245

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360
           G D+A EG D     F  G+++  + +W  + +  +    
Sbjct: 246 GFDVADEGSDANANAFVHGSVVLRMDEWRGEDVIGSADRT 285


>gi|168704975|ref|ZP_02737252.1| hypothetical protein GobsU_35915 [Gemmata obscuriglobus UQM 2246]
          Length = 519

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 87/322 (27%), Gaps = 63/322 (19%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
           ++  + A   +GK+ L   ++ W   TR     +  A ++ Q+K+ LW EV +       
Sbjct: 62  YRVLVKASHSVGKSHLAGGLVNWWYDTRFPGVCLTTAPTDRQVKDVLWKEVRRQRRK--- 118

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
                           +       +  D    T     ++     +F G H    + +  
Sbjct: 119 -------------RPGFVGPKMPRLESDP---THFAHGFTARDATSFQGQH-EASILLIF 161

Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257
           DEA G      ++             W+   N        Y         W    I    
Sbjct: 162 DEAVGIDGDFWEAAESMC--QGAEYGWLAIFNPTDTTSRAYLE-EQAGSRWTVIDIPATE 218

Query: 258 VEGIDSG---------------FHEGIISRYG---LDSDVARIEILGQFPQQEVNNFIPH 299
              I +                +    + ++       D    +I    P      + P 
Sbjct: 219 HPNIAAELVARPPEYPSAVRLNWLRDRLEQWAERIEPGDATPTDIQFPNPDGSPQWWRPG 278

Query: 300 NYIEE----------------AMSREAIDDLYAPL------IMGCDIAGEGGDKTVVVFR 337
              +                  + R        P+       +GCD+A  G D T +  R
Sbjct: 279 PLADARLLARWPASGCGVWSDPVWRSVERAAPDPVPERWLPQIGCDVARFGEDWTELHVR 338

Query: 338 RGNIIEHIFDWSAKLIQETNQE 359
            GN+  H    +    + T + 
Sbjct: 339 CGNVSLHHEAHNGWDTKRTTER 360


>gi|228924410|ref|ZP_04087639.1| hypothetical protein bthur0011_53510 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228835241|gb|EEM80653.1| hypothetical protein bthur0011_53510 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 293

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 1/138 (0%)

Query: 224 WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283
             +  N  R +G FYD  N   + +K +++ +           E +  +YG  SDV R+ 
Sbjct: 1   MFLCGNPTRTSGVFYDSHNRDRDLYKIHKVSSLDSPRTSKDNIEVLKKKYGEGSDVWRVR 60

Query: 284 ILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIE 343
           +LG+FP+ E + FIP   +E+A S +        L +G D+A  G D+TV+  R GN + 
Sbjct: 61  VLGEFPKAEADAFIPLEIVEQAASCKVEPT-GETLDLGVDVARFGDDETVIAPRIGNKVF 119

Query: 344 HIFDWSAKLIQETNQEGC 361
            + +   +   ET     
Sbjct: 120 KLLNHYKQDTMETAGHVL 137


>gi|229844502|ref|ZP_04464642.1| predicted phage terminase large subunit [Haemophilus influenzae
           6P18H1]
 gi|229812751|gb|EEP48440.1| predicted phage terminase large subunit [Haemophilus influenzae
           6P18H1]
          Length = 452

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 94/280 (33%), Gaps = 24/280 (8%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG GK+   A  ++    T+P + ++C    +  + +++   ++  + ML  + +F++
Sbjct: 27  GGRGSGKSFSIARALVLRAYTQP-IRVLCCREIQKSISDSVIQMLADQIEMLGLQAFFDV 85

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
           Q              +  +   +             + +       T    V+ +E    
Sbjct: 86  Q--------------KTQIIGQNGSRFTFA----GLKTNITSIKSMTGIDVVWVEEGENV 127

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262
                  ++    E       I++ N + +    Y  F   P E  K   ++ +      
Sbjct: 128 SKESWDVLIPTIREDGSQI--IVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIM 320
               E ++     D ++ R    G+         I   +I+ A+              I+
Sbjct: 186 KELMEDMVQMRERDYELYRHVYEGEPVADSDKVIIKPLWIDAAVDAHKKLGFVAAGRKII 245

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360
           G D+A EG D     F  G+++  + +W  + +  +    
Sbjct: 246 GFDVADEGSDANANAFVHGSVVLRMDEWHGEDVIGSADRT 285


>gi|326783799|ref|YP_004324193.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
           S-SSM7]
 gi|310003811|gb|ADO98206.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
           S-SSM7]
          Length = 552

 Score =  136 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 47/380 (12%), Positives = 96/380 (25%), Gaps = 64/380 (16%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + +        ++++ E L  A+       F   +       + L  F            
Sbjct: 14  LKKANVAQNFTKKQVAEFLKCAQ---DPVYFAKNYVQIINLDEGLVPF------------ 58

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +       VNN +   F       R  GK+T     +L        ++I  +AN     
Sbjct: 59  EMYDFQEKLVNNFHNNRFNIC-KMPRQSGKSTTVVSYLLHYAIFNDSVTIGILANKAQTA 117

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           ++ L                   ++L            + SM +++K   I   T     
Sbjct: 118 RDLLGRL------------QIAYENLPKWMQQGIIAWNKGSMELENKSKIIAAST----- 160

Query: 181 PDTFVGPHNTHGMAVFNDEASGT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
             +           +F DE +       D    S+    +        ++  +T R    
Sbjct: 161 --SASAVRGMSFNIIFLDEFAFVANHLADDFFSSVYPTISSG--KSTKVIIVSTPRGMNH 216

Query: 237 FYDIFNIP---LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293
           FY +++       ++    +    V G D  + E  I          R+E   +F     
Sbjct: 217 FYRLWHDAELGRNEYVTTDVHWSEVPGRDEAWKEQTIKNTSE--AQFRVEFECEFLGSVD 274

Query: 294 NNFIPHNYIEEAMSREA-----------IDDLYAPLIMGCDIAGE-GGDKTVVVFRRGNI 341
               P                                +  D+A     D +  +      
Sbjct: 275 TLIAPSKLKTMVYDEPINTGKRGGEIYQNPIEKHNYSITVDVARGVEKDYSAFIVFD--- 331

Query: 342 IEHIFDWSAKLIQETNQEGC 361
                 +  K++ +      
Sbjct: 332 ---TTTFPYKVVAKYRNNTI 348


>gi|326782137|ref|YP_004322538.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
           P-HM1]
 gi|310004344|gb|ADO98737.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
           P-HM1]
          Length = 560

 Score =  136 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 45/366 (12%), Positives = 97/366 (26%), Gaps = 61/366 (16%)

Query: 9   QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68
           Q  ++++ E L   +C      F   +          E       W              
Sbjct: 20  QFSKEQIQEYL---KCKEDPVYFARNYIKIISLD---EGIVPFDMW---------DFQEE 64

Query: 69  NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
            + + +   F  A    R  GK+T     +L  I     +++  +AN  +  ++ L    
Sbjct: 65  LIESFHENRFNIA-KLPRQTGKSTTCVSYLLHYILFNDNVNVGILANKLSTARDLLGRL- 122

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
                          + L L          + SM +++    +   T       +     
Sbjct: 123 -----------QLAYEQLPLWLQQGIVVYNKGSMELENGSKILAAST-------SASAVR 164

Query: 189 NTHGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF--- 241
                 +F DE +  P    +    S+    T     +  ++  +T      FY ++   
Sbjct: 165 GMSFNIIFLDEFAFIPNHIAEQFFSSVYPTITSGTSTK--VIIISTPNGMNHFYKLWVDA 222

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301
                 +   ++    V G D+ + E  I+           E   +F    V+  I    
Sbjct: 223 QKGRNGYAWSEVHWSKVPGRDAKWKEQTIANTSERQ--FTQEFDCEFL-GSVDTLITAAK 279

Query: 302 IEEAMSREA-----------IDDLYAPLIMGCDIAGE-GGDKTVVVFRRGNII--EHIFD 347
           +      +                    I+  D++     D +  V           +  
Sbjct: 280 LRTLTYDDPLTTNGSLDVYENPVRDHDYIICVDVSRGLAQDYSAFVVIDITHAPWRLVAK 339

Query: 348 WSAKLI 353
           +    +
Sbjct: 340 YRDHDV 345


>gi|257459276|ref|ZP_05624390.1| phosphatase, Ppx/GppA family [Campylobacter gracilis RM3268]
 gi|257443289|gb|EEV18418.1| phosphatase, Ppx/GppA family [Campylobacter gracilis RM3268]
          Length = 431

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 58/308 (18%), Positives = 96/308 (31%), Gaps = 27/308 (8%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
           E    +                 C I  GR  G T   A   +  +    G  I+ +   
Sbjct: 3   ELALDLRYTPQQKAVFFQNDARFCTIEKGRRFGFTKGTANACIEWLL--EGQKILWVDTI 60

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
              LK          L  LP   W                    +     K   I     
Sbjct: 61  AANLKRYFERYFLPELRQLPKELW--------------------NWNAQDKQLKICGGYL 100

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
                +            V  +EA        +  + +      NPN    +    +  N
Sbjct: 101 DFRSAERPENIEGFGYDTVILNEAGIILKDPYLWDNAISPMLLDNPNSRAFIGGVPKGKN 160

Query: 235 GWFYDIFNIPLED--WKRYQIDTRTVEGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQ 291
            +F         +  W+ +Q  +     +     + +++  G  DSDVAR EI G+F   
Sbjct: 161 KFFDLAQRGMRNEKGWRNFQFSSYDNPLLQKEEIDRLVAELGGADSDVARQEIFGEFLDT 220

Query: 292 EVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
             N+      IE A  ++   D  AP+I   D+A EG D++V+  R+G+ +E +  +   
Sbjct: 221 TSNSVFSLAAIEAAFRKQRYFDAGAPVIWALDVAREGDDESVLCKRQGDSVEPLKPYRIA 280

Query: 352 LIQETNQE 359
              E  +E
Sbjct: 281 STSELARE 288


>gi|282880015|ref|ZP_06288737.1| hypothetical protein HMPREF9019_0946 [Prevotella timonensis CRIS
           5C-B1]
 gi|281306129|gb|EFA98167.1| hypothetical protein HMPREF9019_0946 [Prevotella timonensis CRIS
           5C-B1]
          Length = 459

 Score =  136 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 52/333 (15%), Positives = 104/333 (31%), Gaps = 72/333 (21%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRP----------GMSIICIANSETQLKNTLWAEVS 129
            A+++G   GK  + A   +  +   P             I   A +  Q  N +  EV+
Sbjct: 2   VAVASGTSRGKDFVAACAAMCFMYLTPRWNINHRLIQNTKIAMTAPTGRQCINIMIPEVA 61

Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189
           +            +                  +  ++  + +T    S++  + + G H 
Sbjct: 62  RLFRNASVLPGRMLSDG---------------IRTNNAEWFLTAFKASDDNTEAWSGFHA 106

Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
            + M     EASG  +    +I G     +         N     G+           +K
Sbjct: 107 VNTMF-VVTEASGVSETTFNAIEGNLQGNSRLLLVF---NPNVTTGYAAKAM--KSSRFK 160

Query: 250 RYQIDTRTVEGI-----------DSGFHEGIISRY----------------------GLD 276
           ++++++   E +           D  + +  +  +                         
Sbjct: 161 KFRLNSLNAENVIKKKNVIPGQVDYEWVKDKVHNWCELIQKEDFNNGEGDFMFEDSFYRP 220

Query: 277 SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL-----IMGCDIAGEGGDK 331
           +D+ RI++LG FP+   +  IP  ++E A  R    +    +      +G D+AG G D 
Sbjct: 221 NDLFRIKVLGLFPKASEDTLIPFEWLELAHDRWKKLNAEDFVPRKYARVGIDVAGMGRDS 280

Query: 332 TVVVFRRGNIIEHIFDWS---AKLIQETNQEGC 361
           +  V R GN +  I            +   E  
Sbjct: 281 SCFVLRYGNYVPEIKIHQSGGKADHMKVAGEAV 313


>gi|315649222|ref|ZP_07902312.1| hypothetical protein PVOR_28644 [Paenibacillus vortex V453]
 gi|315275441|gb|EFU38799.1| hypothetical protein PVOR_28644 [Paenibacillus vortex V453]
          Length = 189

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 81/223 (36%), Gaps = 45/223 (20%)

Query: 15  LHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSN 74
           L ++            F                   P  WQ + M  V            
Sbjct: 11  LLDLYW-----DDPVAFA-----------EDMMGFDPDDWQCDVMMDVTQF--------- 45

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
               + ++ +G+G+GKT L A +++W +  RP   ++C A ++ QL + LW EVSKWL  
Sbjct: 46  ---PRTSVRSGQGVGKTGLEAALVIWFLCCRPNPKVVCTAPTKQQLHDVLWTEVSKWLEN 102

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
              ++  +     ++                 + +  T RT    +P+   G H    M 
Sbjct: 103 SMVKNLLKWTKTKVYM------------IGHEQRWFATARTA--NKPENMQGFH-EDYML 147

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
              DEASG  D I ++ILG  +            N  R +G F
Sbjct: 148 FIVDEASGVSDPIMEAILGTLSGAENKLLMC--GNPTRTSGVF 188


>gi|113200627|ref|YP_717790.1| terminase large subunit [Synechococcus phage syn9]
 gi|76574526|gb|ABA47091.1| terminase large subunit [Synechococcus phage syn9]
          Length = 549

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/374 (12%), Positives = 109/374 (29%), Gaps = 61/374 (16%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + +   + +    ++ E++   +C  +   F+  +       K L  F            
Sbjct: 13  LKKANVSQEFTPDQVAEVI---KCSENPVYFIKNYIKIVSLDKGLIPFD----------- 58

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +       V   +   F  A    R  GK+T+    +LW +     +++  +AN     
Sbjct: 59  -MYYFQEEMVQKFHDNRFNIA-KLPRQSGKSTIVTSYLLWYVLFNANVNVAILANKAATA 116

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           +  L                   ++L         +    S+ +++    +   T     
Sbjct: 117 REMLQRL------------QLSYENLPKWLQQGILQWNRGSLELENGSKILAAST----- 159

Query: 181 PDTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
             +           +F DE +  P    D    S+    +        ++  +T      
Sbjct: 160 --SASAVRGMSFNVIFLDEFAFVPNHVADQFFSSVYPTISSG--KSTKVIIISTPHGMNM 215

Query: 237 FYDIFNIP---LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293
           FY +++       ++   ++    V G D+ + E  I          R+E   +F    V
Sbjct: 216 FYKLWHDAERKANEYIPTEVHWSEVPGRDAAWKEQTIKNTSEQQ--FRVEFECEFL-GSV 272

Query: 294 NNFIPHNYIEEAMSREA-----------IDDLYAPLIMGCDIAGE-GGDKTVVVFRRGNI 341
           +  I  + +   +  +                    ++  D++    GD +  +      
Sbjct: 273 DTLISPSKLRTMVYGDPIAEKNGLSMYEKTIQGHTYVITADVSRGVSGDYSAFLVIDTTT 332

Query: 342 I--EHIFDWSAKLI 353
           I  + +  +    I
Sbjct: 333 IPYKLVAKYRNNDI 346


>gi|326783087|ref|YP_004323484.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
           P-HM2]
 gi|310005505|gb|ADO99893.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
           P-HM2]
          Length = 560

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/365 (12%), Positives = 96/365 (26%), Gaps = 59/365 (16%)

Query: 9   QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68
           Q  + ++ E L   +C      F M +          E       W              
Sbjct: 20  QFTKHQIQEYL---KCKEDPVYFAMNYIKIISLD---EGIVPFKMW---------DFQQE 64

Query: 69  NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
            + + +   F  A    R  GK+T     +L  I     +++  +AN  +  ++ L    
Sbjct: 65  LIESFHEHRFNIA-KLPRQTGKSTTCVSYLLHYILFNDNVNVGILANKLSTARDLL---- 119

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
                    R     + L L          + SM +++    +   T       +     
Sbjct: 120 --------SRLQLAYEQLPLWIQQGIVVYNKGSMELENGSKILAAST-------SASAVR 164

Query: 189 NTHGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF--- 241
                 +F DE +  P    +    S+    T     +  ++  +T      FY ++   
Sbjct: 165 GMSFNIIFLDEFAFIPNHIAEQFFSSVYPTITSGTSTK--VIIISTPNGMNHFYKLWVDA 222

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301
                 +   ++    V G D+ + E  I+           E   +F             
Sbjct: 223 QKGRNGYAWNEVHWSKVPGRDAKWKEQTIANTSERQ--FTQEFDCEFLGSVDTLITASKL 280

Query: 302 ----------IEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVFRRGNII--EHIFDW 348
                        ++            I+  D++     D +  V           +  +
Sbjct: 281 RVLTYDDVMTTNGSLDIYEKPIDKHEYIITVDVSRGLAQDYSAFVVIDITHAPWRLVAKY 340

Query: 349 SAKLI 353
             K +
Sbjct: 341 RDKDV 345


>gi|294789575|ref|ZP_06754810.1| putative terminase B protein [Simonsiella muelleri ATCC 29453]
 gi|294482512|gb|EFG30204.1| putative terminase B protein [Simonsiella muelleri ATCC 29453]
          Length = 516

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/332 (16%), Positives = 111/332 (33%), Gaps = 43/332 (12%)

Query: 24  CVLSFKNFV----MRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFK 79
            + +    V        P G       +   P   Q + + A+                K
Sbjct: 3   ILNNPLYHVFVKRYANDPVGFVLGVCGNSVSPD--QEKLLNAIID-----------PTAK 49

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRP----------GMSIICIANSETQLKNTLWAEVS 129
            ++ +G G GKT     + LW +   P          G +    A +  Q+ + +W E++
Sbjct: 50  VSVVSGTGTGKTMSFGRIALWHLLCFPVAKYDGKIEIGSNTYIGAPAIKQVGDGVWKEIT 109

Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189
             +  +         +  +       +     +      + IT     + +  +  G H 
Sbjct: 110 DAVQAMRANRATAWLAEYI-----VVQAERVYIIDYKATWFITKFAMQQGQSVSIAGKHR 164

Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED-- 247
            +   +  DEA+G  D   + I G  T+              +  G+FY+  +   ++  
Sbjct: 165 FYQ-LIIIDEAAGVSDEHYEVINGTQTQGGNRTLLASQG--VKQGGFFYETHHKLNKENG 221

Query: 248 --WKRYQIDTRTVEGIDSGFHEG-IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE 304
             W      +     + + + E   +   G ++   R+ +LG+F + E  N +    IE 
Sbjct: 222 GNWTALCFSSENSPFVTTEWLENVALQAGGKNTTEYRVRVLGKFAENEHENLLTRAQIEP 281

Query: 305 AMSREAIDDLYAP--LIMGCDI-AGEGGDKTV 333
            +    I +   P   ++  D+ AGE  D +V
Sbjct: 282 RIDTLPIIEKGEPFGWLLLVDVGAGEYRDDSV 313


>gi|260580755|ref|ZP_05848581.1| phage terminase large subunit [Haemophilus influenzae RdAW]
 gi|260092572|gb|EEW76509.1| phage terminase large subunit [Haemophilus influenzae RdAW]
          Length = 447

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 89/280 (31%), Gaps = 24/280 (8%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG GK+   A  ++      P + ++C    +  + +++   ++  + ML  + +F++
Sbjct: 27  GGRGSGKSFSIARALVLRAYQSP-VRVLCCREIQKSISDSVIQMLADQIEMLSLQAFFDV 85

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
           Q              +  +   +             + +       T    V+ +E    
Sbjct: 86  Q--------------KTQIIGQNGSRFTFA----GLKTNITSIKSMTGIDVVWVEEGENV 127

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262
                  ++    E       I++ N + +    Y  F   P E  K   ++ +      
Sbjct: 128 SKESWDILIPTIREDGSQI--IVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIM 320
               E +      D ++ R    G+         I   +IE A+               +
Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWIEYAVDAHLKLGFTAKGMKKV 245

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360
           G D+A EG D     F  G+++  I  W    + ++    
Sbjct: 246 GFDVADEGADSNANAFVHGSVVLDIEVWKNGDVIDSANRT 285


>gi|148826888|ref|YP_001291641.1| phage terminase large subunit [Haemophilus influenzae PittGG]
 gi|148718130|gb|ABQ99257.1| predicted phage terminase large subunit [Haemophilus influenzae
           PittGG]
          Length = 366

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 89/280 (31%), Gaps = 24/280 (8%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG GK+   A  ++      P + ++C    +  + +++   ++  + ML  R +F++
Sbjct: 27  GGRGSGKSFSIARALVLRAYQSP-VRVLCCREIQKSISDSVIQMLADQIEMLGLRAFFDV 85

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
           Q              +  +   +             + +       T    V+ +E    
Sbjct: 86  Q--------------KTQIIGQNGSRFTFA----GLKTNITSIKSMTGIDVVWVEEGENV 127

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262
                  ++    E       I++ N + +    Y  F   P E  K   ++ +      
Sbjct: 128 SKESWDILIPTIREDGSQI--IVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIM 320
               E +      D ++ R    G+         I   +IE A+               +
Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWIEYAVDAHLKLGFTAKGMKKV 245

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360
           G D+A EG D     F  G+++  I  W    + ++    
Sbjct: 246 GFDVADEGADSNANAFVHGSVVLDIEVWKNGDVIDSANRT 285


>gi|319776448|ref|YP_004138936.1| phage terminase large subunit [Haemophilus influenzae F3047]
 gi|319897217|ref|YP_004135412.1| phage terminase large subunit [Haemophilus influenzae F3031]
 gi|329123931|ref|ZP_08252483.1| phage terminase large subunit [Haemophilus aegyptius ATCC 11116]
 gi|317432721|emb|CBY81084.1| predicted phage terminase large subunit [Haemophilus influenzae
           F3031]
 gi|317451039|emb|CBY87270.1| predicted phage terminase large subunit [Haemophilus influenzae
           F3047]
 gi|327468126|gb|EGF13613.1| phage terminase large subunit [Haemophilus aegyptius ATCC 11116]
          Length = 447

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 89/280 (31%), Gaps = 24/280 (8%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG GK+   A  ++      P + ++C    +  + +++   ++  + ML  + +F++
Sbjct: 27  GGRGSGKSFSIARALVLRAYQSP-VRVLCCREIQKSISDSVIQMLADQIEMLGLQAFFDV 85

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
           Q              +  +   +             + +       T    V+ +E    
Sbjct: 86  Q--------------KTQIIGQNGSRFTFA----GLKTNITSIKSMTGIDVVWVEEGENV 127

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262
                  ++    E       I++ N + +    Y  F   P E  K   ++ +      
Sbjct: 128 SKESWDILIPTIREDGSQI--IVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIM 320
               E +      D ++ R    G+         I   +IE A+               +
Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWIESAVDAHLKLGFTTKGMKKV 245

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360
           G D+A EG D     F  G+++  +  W    + ++    
Sbjct: 246 GFDVADEGADANANAFVHGSVVLGVEVWKNGDVIDSANRT 285


>gi|145629503|ref|ZP_01785301.1| predicted phage terminase large subunit [Haemophilus influenzae
           22.1-21]
 gi|145641440|ref|ZP_01797019.1| predicted phage terminase large subunit [Haemophilus influenzae
           R3021]
 gi|144978346|gb|EDJ88110.1| predicted phage terminase large subunit [Haemophilus influenzae
           22.1-21]
 gi|145273983|gb|EDK13850.1| predicted phage terminase large subunit [Haemophilus influenzae
           22.4-21]
 gi|309750959|gb|ADO80943.1| Probable bacteriophage terminase, large subunit [Haemophilus
           influenzae R2866]
          Length = 447

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 89/280 (31%), Gaps = 24/280 (8%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG GK+   A  ++      P + ++C    +  + +++   ++  + ML  + +F++
Sbjct: 27  GGRGSGKSFSIARALVLRAYQSP-VRVLCCREIQKSISDSVIQMLADQVEMLGLQDFFDV 85

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
           Q              +  +   +             + +       T    V+ +E    
Sbjct: 86  Q--------------KTQIIGQNGSRFTFA----GLKTNITSIKSMTGIDVVWVEEGENV 127

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262
                  ++    E       I++ N + +    Y  F   P E  K   ++ +      
Sbjct: 128 SKESWDILIPTIREDGSQI--IVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIM 320
               E +      D ++ R    G+         I   +IE A+               +
Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWIESAVDAHLKLGFTTKGMKKV 245

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360
           G D+A EG D     F  G+++  +  W    + ++    
Sbjct: 246 GFDVADEGADANANAFVHGSVVLGVEVWKNGDVIDSANRT 285


>gi|226227228|ref|YP_002761334.1| hypothetical protein GAU_1822 [Gemmatimonas aurantiaca T-27]
 gi|226090419|dbj|BAH38864.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 549

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 53/283 (18%), Positives = 90/283 (31%), Gaps = 29/283 (10%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK-WLSMLPHR 138
            A+++G G GKT L A ++LW I+  P      +A    Q +  +W EV++ W       
Sbjct: 70  VAVASGTGTGKTFLEAVLLLWWIAVEPDSIATTVATKADQQEKGIWREVARHWPRFQACF 129

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
              E+ +L +    W  +                     EE      G H    + +  D
Sbjct: 130 PEAELTTLRIRMEPWRGDAW-------GAWGITAAPKAGEESSSAVQGLHA-KRLLILVD 181

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
           E  G P  +  +++   T            N                +     +I     
Sbjct: 182 ETPGVPQPVMTALVNTAT--GEENVIAAFGNPDYQADPLGQFAET--KRVTAIRISALDH 237

Query: 259 EGI-----------DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
             +                     +YG++S V +  + G  P+Q  +  I   +   A  
Sbjct: 238 PNVVLGVERIPGAATRLSIATREDKYGVESGVYQSRVRGIAPEQSASALIHLAWCVAAAD 297

Query: 308 REAIDDLYA----PLIMGCDIAG-EGGDKTVVVFRRGNIIEHI 345
           R       A    P  +G D+A  E GDK  V   +G  +  +
Sbjct: 298 RAESVQHAALALGPKALGVDVAQSENGDKAAVAMGQGARLLSV 340


>gi|218290759|ref|ZP_03494841.1| protein of unknown function DUF264 [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218239297|gb|EED06496.1| protein of unknown function DUF264 [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 422

 Score =  130 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 88/303 (29%), Gaps = 38/303 (12%)

Query: 49  SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108
           S+P   QL  +     H      + +   F+ A + GR  GKT   A  +       PG 
Sbjct: 7   SEPTSKQLR-LRLYTPHSGQVALHRSTARFRVA-TCGRRWGKTYACANEIAKWAWEHPGA 64

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
               +A +  Q                               +  +   +E++     + 
Sbjct: 65  MTWWVAPTYRQTLTAY-----------------------RIITRNFHGAIEKATTTHMRI 101

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK-SILGFFTELNPNRFWIMT 227
              +         + F          +  DEA+  P    + ++    ++       +  
Sbjct: 102 EWKSGSITEFRSTENFDALRGEGLDFLVVDEAAMVPKEAWEAALRPTLSDKAGRAIIV-- 159

Query: 228 SNTRRLNGWFYDIFNIPLE----DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283
            +T +   WFY ++    +    +W+ ++  T     I     E   +     SDV R E
Sbjct: 160 -STPKGRNWFYHVWARGQDPAFPEWESFRFPTLANPYIPPEEVEEARTTL--PSDVFRQE 216

Query: 284 ILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIE 343
              +F +     F            E         ++G D+A    D +V+V        
Sbjct: 217 YEAEFLEDSAGVFRGIRDCISGQ--EEEPQPGRRYVVGWDVAKH-QDFSVLVVMDLERAH 273

Query: 344 HIF 346
            + 
Sbjct: 274 VVK 276


>gi|225155389|ref|ZP_03723881.1| hypothetical protein ObacDRAFT_9437 [Opitutaceae bacterium TAV2]
 gi|224803845|gb|EEG22076.1| hypothetical protein ObacDRAFT_9437 [Opitutaceae bacterium TAV2]
          Length = 479

 Score =  130 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 56/297 (18%), Positives = 102/297 (34%), Gaps = 41/297 (13%)

Query: 54  WQLEFMEAVDVHCHSNVNNSNPTIFKCAISA-GRGIGK-TTLNAWMMLWLISTRPGMSII 111
           WQ + M +V                K  ++A   G GK + +   + L L+   PG +++
Sbjct: 38  WQAKIMASVWSG-------------KPTVAATPNGAGKTSVIIVALALTLLHEFPGATVV 84

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             + +   + + ++A ++   +      W                  +  +        I
Sbjct: 85  LTSATYRAVCDQIFASLAVHQAKFSAWKW-----------------NDTEINDGQGGRII 127

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
              T    R + F        + +  DEA    D I  +      +       +  S+  
Sbjct: 128 GFATDRGGRFEGFHAYPGR-PLLIILDEAKSIADDIFVAA-----DRCQPTMLLYISSWG 181

Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
            L G F+D F+   + + ++Q        I   F E + ++YG DSD+ R  ILGQ P+ 
Sbjct: 182 GLFGRFHDAFS--QDRFAQFQAGIADCPHITPEFIEAMRAQYGEDSDIYRSMILGQRPKG 239

Query: 292 EVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348
               F+      E               + CD A    D+ V+  R GN +  +  W
Sbjct: 240 NETGFVVPFVDYERCESNPPVWQEGTKQVFCDFAET-SDECVIAKRDGNRLSIVDAW 295


>gi|68250076|ref|YP_249188.1| phage terminase large subunit [Haemophilus influenzae 86-028NP]
 gi|68058275|gb|AAX88528.1| predicted phage terminase large subunit [Haemophilus influenzae
           86-028NP]
          Length = 447

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 90/280 (32%), Gaps = 24/280 (8%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG GK+   A  ++      P + ++C    +  + +++   ++  + ML  +++F++
Sbjct: 27  GGRGSGKSFSIARALVLRAYQSP-VRVLCCREIQKSISDSVIQMLADQIEMLGLQNFFDV 85

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
           Q              +  +   +             + +       T    V+ +E    
Sbjct: 86  Q--------------KTQIIGQNGSRFTFA----GLKTNITSIKSMTGIDVVWVEEGENV 127

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262
                  ++    E       I++ N + +    Y  F   P E  K   ++ +      
Sbjct: 128 SKESWDILIPTIREDGSQI--IVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIM 320
               E +      D ++ R    G+         I   +IE A+               +
Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWIECAVDAHLKLGFTAKGMKKV 245

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360
           G D+A EG D     F  G+++  I  W    + ++    
Sbjct: 246 GFDVADEGADSNDNAFVHGSVVLDIEVWKNGDVIDSANRT 285


>gi|119386463|ref|YP_917518.1| PBSX family phage terminase large subunit [Paracoccus denitrificans
           PD1222]
 gi|119377058|gb|ABL71822.1| phage terminase, large subunit, PBSX family [Paracoccus
           denitrificans PD1222]
          Length = 441

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 85/259 (32%), Gaps = 20/259 (7%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG GK+   A  M+    T PG+S IC+ + +  L  +++  + +             
Sbjct: 26  GGRGSGKSWDRAMHMIVRHLTEPGLSSICLRDVQKSLDQSVFKLLVE------------- 72

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
            +  L  +     +    +     +  I     +E   +             + +EA+  
Sbjct: 73  TAARLGVAEAIRPVESDRIIRTPGNGIIAFNGMNEFNAENIKSL--EGFDIAWWEEAATA 130

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL---EDWKRYQIDTRTVEG 260
                  +     +     +   T N R  +     +        +     + + R    
Sbjct: 131 GQGPLDMLRPTLRKPGSQIW--FTYNPRLRSDPVDVMMRQDARFADSRTVVEANWRDNPF 188

Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIM 320
                 E  +     D    R    G +  +    FI    + EAM+R+    +   L++
Sbjct: 189 RGPELEEERLLDLAGDEARYRHIWEGDYEAESDMQFIGGGLVREAMARQPFSQIGDELVL 248

Query: 321 GCDIAGEGGDKTVVVFRRG 339
           G D+A  G D++V+  RRG
Sbjct: 249 GVDVARFGDDRSVIWARRG 267


>gi|86372240|gb|ABC95184.1| GP17-terminase [Stenotrophomonas phage Smp14]
          Length = 536

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/349 (14%), Positives = 93/349 (26%), Gaps = 58/349 (16%)

Query: 9   QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68
           Q  E EL E+      V  F               P   F     +Q + ++ V  +   
Sbjct: 28  QFSEWELDELEKCQNDVHYFIANYCMIISLDDGLVPFRMFG----YQKKMVDIVLAN--- 80

Query: 69  NVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127
                     + +I    R +GKTT+ A ++LW         I  +AN   Q +  L   
Sbjct: 81  ----------RFSIFKWPRQMGKTTVVAAILLWYAIFNEEYRIAILANKGDQSREILARL 130

Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187
                           + L        +   + ++ + ++    T  T            
Sbjct: 131 ------------QLMYEELPWFMQVGVSVWNKGNIKLGNRSEVFTAAT-------GGSSI 171

Query: 188 HNTHGMAVFNDEASGTPDII-NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246
                  ++ DE +   + +   +              I+TS        FY I+     
Sbjct: 172 RGKSVNLMYLDEFAFVENDVDFYTSTYPVVTSGTKTKVIITSTPN-GMNLFYKIWTDSTN 230

Query: 247 DWKRYQID---TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI- 302
               Y  +          D  + +  +            E L +F         P     
Sbjct: 231 GKNNYVHNEAFWHDHPKRDQAWKDEQLRNMSERQ--FEQEFLCKFQGSSDTLLSPAKLEQ 288

Query: 303 --------EEAMSREAI----DDLYAPLIMGCDIA-GEGGDKTVVVFRR 338
                   E   +R+          A  ++  D++ G G D +V+    
Sbjct: 289 LTYQDHIRELGGNRDFKIYEDPIKDASYVVTVDVSEGIGKDYSVISVFD 337


>gi|329119006|ref|ZP_08247700.1| phage terminase large subunit [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464879|gb|EGF11170.1| phage terminase large subunit [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 449

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 91/280 (32%), Gaps = 23/280 (8%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG GK+   A + + +   R G  I+C    +  L ++++  +++ ++ L +   FE+
Sbjct: 20  GGRGSGKSYFLAELAVEVA-RRIGTVILCAREFQGSLDDSVYQLLTETIARLGYTQEFEI 78

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
              S+                             +                 + +EA   
Sbjct: 79  LKSSIR---------------HKGTGAKFVFYGVKNNITKIKSIQGVG--ICWVEEAEAV 121

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRYQIDTRTVEGI- 261
                  ++           W+   N + +    Y  F   P +D    + +        
Sbjct: 122 TKNSWDVLIPSIRGDKNAEIWVSF-NPKNILDDTYQRFIVHPPKDSIVLKANYDINPHFA 180

Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLI 319
           D+     ++     D D+ R   LG+         I  ++IE A+              I
Sbjct: 181 DTPLLADMLECKERDEDLYRHIWLGEPVADSELAIIKPSWIEAAIDAHEKLGFSAAGRRI 240

Query: 320 MGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
           +G D+A EG D    V R G+++  +  W  + +  +  +
Sbjct: 241 LGFDVADEGDDANATVLRHGSVVTDMQQWRGQDVIYSADK 280


>gi|301170180|emb|CBW29784.1| predicted phage terminase large subunit [Haemophilus influenzae
           10810]
          Length = 447

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 88/280 (31%), Gaps = 24/280 (8%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG GK+   A  ++      P + ++C    +  + +++   ++  + ML  + +F++
Sbjct: 27  GGRGSGKSFSIARALVLRAYQSP-VRVLCCREIQKSISDSVIQMLADQVEMLGLQDFFDV 85

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
           Q   +                 +             + +       T    V+ +E    
Sbjct: 86  QKTQIIEQ--------------NGSRFTFA----GLKTNITSIKSMTGIDVVWVEEGENV 127

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262
                  ++    E       I++ N + +    Y  F   P E  K   ++ +      
Sbjct: 128 SKESWDILIPTIREDGSQI--IVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIM 320
               E +      D ++ R    G+         I   +IE A+               +
Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWIESAVDAHLKLGFTTKGMKKV 245

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360
           G D+A EG D     F  G+++  I  W    + ++    
Sbjct: 246 GFDVADEGADSNANAFVHGSVVLDIEVWKNGYVIDSANRT 285


>gi|150021340|ref|YP_001306694.1| hypothetical protein Tmel_1462 [Thermosipho melanesiensis BI429]
 gi|149793861|gb|ABR31309.1| protein of unknown function DUF264 [Thermosipho melanesiensis
           BI429]
          Length = 421

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 90/289 (31%), Gaps = 37/289 (12%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
            I AGR  GKT   A  + +  +  P   +I    S  Q K   +  +++ + + P + +
Sbjct: 38  VICAGRRFGKTNYVAGKIFYYATIHPKSRVIVGGPSLDQAK-IYYDLLTEAIELSPLKGF 96

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
            +    S  P+ +       ++                                V   EA
Sbjct: 97  VKKTKDSPFPTIYLKNGSSITVRST---------------AHNGKYLRGRKVNLVVLTEA 141

Query: 201 SGTPDIINK-SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP---LEDWKRYQIDTR 256
           +   D + +  I     +       ++  +T     +FY+ +       +    +     
Sbjct: 142 AFIKDSVYEQVITPMKLDTGAP---VILESTPNGMNYFYEEYQRGLKNKKHTISFHATVY 198

Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA 316
               +D    E   ++      V R E L +F   +   F P   + EA   +   + Y 
Sbjct: 199 DNPFLDQEEIENAKAKT--PDYVWRQEYLAEFVD-DDTVFFPWKILVEAFE-DYKPEGYK 254

Query: 317 P---LIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGCP 362
                 +G D+A    D TV+      I+  + +   K+ +       P
Sbjct: 255 DGRKYSIGVDLAKY-RDYTVI------IVLDVTEEPFKIAEFHRFNQIP 296


>gi|282598783|ref|YP_003359102.1| putative large subunit terminase [Clavibacter phage CMP1]
 gi|262212571|gb|ACY35907.1| putative large subunit terminase [Clavibacter phage CMP1]
          Length = 872

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 90/288 (31%), Gaps = 32/288 (11%)

Query: 91  TTLNAWMMLWLISTRPG--MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
           T L   ++ W +S  P    S++  A    Q+   ++  +    ++   R    +  ++ 
Sbjct: 424 TRLAGDLVTWFVSVFPPEETSVMVSAPIREQIDVMMFRYLRDNYNLAIEREQPLIGEITK 483

Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208
            P        +    +D K      R        +F G H    +AV  DEA G P+ + 
Sbjct: 484 WP------YWQVGAPLDKKLVMP-KRPADGNLISSFQGIH-DGHVAVVLDEAGGLPEDLY 535

Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED--WKRYQIDTRTVEGIDSGFH 266
                  T  +         N  + N  F++ F    +   W R+ I             
Sbjct: 536 IGANAVTTNFHARIL--AIGNPDKRNTPFHERFTDTEKFSSWNRFTIGAEDTPNFTGEKI 593

Query: 267 EG------------------IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR 308
                               +  R      V   ++ G FP+ +   F   + I    S 
Sbjct: 594 YEDPAKDEDVKKHLVQVSWAVEMRKSARPSVVAAKVDGNFPESDDTTFFDQSVINRGYST 653

Query: 309 EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQET 356
           E   +      MG DI+ +G D++V     G  I    +W+     E 
Sbjct: 654 EIEPESTDFKYMGVDISYQGEDQSVAYINHGGQIRIADEWNRFDGAEH 701


>gi|85058727|ref|YP_454429.1| phage terminase large subunit [Sodalis glossinidius str.
           'morsitans']
 gi|84779247|dbj|BAE74024.1| phage terminase large subunit [Sodalis glossinidius str.
           'morsitans']
          Length = 456

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 88/289 (30%), Gaps = 24/289 (8%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
            P  +K A   GRG GK+   A +++ +   R     +C    +  + +++   ++  + 
Sbjct: 13  QPHRYKIA-KGGRGSGKSWAIARLLVEIA-RRGTYRFLCAREFQASMADSVIQLIADTIQ 70

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
              +   FE+Q   +      +  +   +                   +           
Sbjct: 71  REGYLKEFEIQKAYIRYLATDSLFMFYGIKN-----------------NVTKIKSLEGID 113

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
             + +EA          ++    +      W+   N + +    Y  F   PL+D     
Sbjct: 114 IAWVEEAEAVTKESWDILIPTIRKPGSE-IWVSF-NPKNILDDTYQRFVVNPLDDICLLT 171

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
           +               +      D D+      G+         I   +I  A+      
Sbjct: 172 VHYTDNPHFPEVLRLEMEECKCKDYDLYLHIWEGEPVADSDLAIIKPLWIAAAVDAHITL 231

Query: 313 --DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
             +      +G D+A EG D   ++   G+++ H+  W+   + ++   
Sbjct: 232 GFEPAGKKRIGFDVADEGEDSNALILSHGSVVMHLETWNKGDVIQSADR 280


>gi|268589862|ref|ZP_06124083.1| phage terminase, large subunit, PBSX family [Providencia rettgeri
           DSM 1131]
 gi|291314845|gb|EFE55298.1| phage terminase, large subunit, PBSX family [Providencia rettgeri
           DSM 1131]
          Length = 470

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 85/277 (30%), Gaps = 24/277 (8%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
               +K A   GRG GK+   A +++   + R  + I+C    +  + +++   +   + 
Sbjct: 13  EAHRYKVA-KGGRGSGKSWAIARLLV-EAARRQPVRILCARELQNSISDSVIRLLEDTIE 70

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
              + + FE+Q   +   G  AE +   +  +                            
Sbjct: 71  REGYNNEFEIQRTMIKHLGTGAEFMFYGIKNNPT-----------------KIKSLEGVD 113

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
             + +EA          ++    + N    W+   N + +    Y  F   P +D     
Sbjct: 114 VCWVEEAEAVTKESWDILIPTIRKPNSE-IWVSF-NPKNILDDTYQRFVVNPPDDICLLT 171

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI- 311
            +              +      +  + R   LG+         I   ++E A       
Sbjct: 172 ANYTDNPHFPDVLRLEMEECKRKNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKL 231

Query: 312 -DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
                  +I   D +  GGD      R G++++ I +
Sbjct: 232 GWKAKGAIIATHDPSDVGGDAKGYAMRHGSVVKRISE 268


>gi|283956317|ref|ZP_06373797.1| terminase B protein, putative [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792037|gb|EFC30826.1| terminase B protein, putative [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 430

 Score =  126 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 53/310 (17%), Positives = 99/310 (31%), Gaps = 36/310 (11%)

Query: 63  DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN 122
                  V +     F   ++ GR +G T  +A  ++  +    G +++ +        +
Sbjct: 9   YTPAQLKVFDDKNPRF-ITVAKGRRLGFTRGSAKFVIENLLL--GQNVLWV--------D 57

Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182
           T+ A +  +  +               P          S  +  K   I          +
Sbjct: 58  TIQANLQNYYELY------------FTPELKNLPKDFYSWSVQDKKLIINGAVLHMRSAE 105

Query: 183 TFVGPHNTHGMAVFNDEASGTPDI------INKSILGFFTELNPNRFWIMTSNTRRLNGW 236
                       V  +EA               +I       +  +   +     +    
Sbjct: 106 RSENIEGFGYDLVILNEAGIILKGSKGEYLWYNAIRPMLL--DNPKSRAIIGGVPKGKNL 163

Query: 237 FYDIFNIPLED--WKRYQIDTRTVEGIDSGFHEGIISRYG-LDSDVARIEILGQFPQQEV 293
           FY++    L D  WK +Q  +     +     + +I   G  DS+V + EI G+F     
Sbjct: 164 FYELCRKELSDKNWKHFQFSSYDNPFLKEEQIKELIEEVGGEDSEVVKQEIYGEFIDSSS 223

Query: 294 NNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
                   IE AMS+ +   + +    I G D+A  G DK+V+  R+G I++ I  +S  
Sbjct: 224 AELFALTEIENAMSKNSFSIEKMQGENIWGLDVARYGDDKSVLAKRKGFIVDEIKKYSQL 283

Query: 352 LIQETNQEGC 361
              E      
Sbjct: 284 GTMELANRIL 293


>gi|85059798|ref|YP_455500.1| phage terminase large subunit [Sodalis glossinidius str.
           'morsitans']
 gi|84780318|dbj|BAE75095.1| phage terminase large subunit [Sodalis glossinidius str.
           'morsitans']
          Length = 483

 Score =  126 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 88/289 (30%), Gaps = 24/289 (8%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
            P  +K A   GRG GK+   A +++ +   R     +C    +  + +++   ++  + 
Sbjct: 13  QPHRYKIA-KGGRGSGKSWAIARLLVEIA-RRGTYRFLCAREFQASMADSVIQLIADTIQ 70

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
              +   FE+Q   +      +  +   +                   +           
Sbjct: 71  REGYLKEFEIQKAYIRHLATDSLFMFYGIKN-----------------NVTKIKSLEGID 113

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
             + +EA          ++    +      W+   N + +    Y  F   PL+D     
Sbjct: 114 IAWVEEAEAVTKESWDILIPTIRKPGSE-IWVSF-NPKNILDDTYQRFVVNPLDDICLLT 171

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
           +               +      D D+      G+         I   +I  A+      
Sbjct: 172 VHYTDNPHFPEVLRLEMEECKCKDYDLYLHIWEGEPVADSDLAIIKPLWIAAAVDAHMTL 231

Query: 313 --DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
             D      +G D+A EG D   + F +G+++  + +W    +  ++  
Sbjct: 232 GFDAVGEKRLGFDVADEGEDCNALCFVQGSVVLDLDEWHRGDVIASSNR 280


>gi|309379923|emb|CBX21334.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 449

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 90/280 (32%), Gaps = 23/280 (8%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG GK+   A + +  +S R G  I+C    +  L ++++  + + +  L +   F++
Sbjct: 20  GGRGSGKSYFLAELAV-EVSRRIGTVILCAREFQGSLDDSVYQLLIETIERLGYTEEFDI 78

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
              ++                             +                 + +EA   
Sbjct: 79  LKSTI---------------THKGTGAKFVFYGIKNNVTKIKSIQGVGV--CWVEEAEAV 121

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRYQIDTRTVEGI- 261
                  ++           W+   N + +    Y  F   P +D    + +        
Sbjct: 122 TKNSWDVLIPSIRGDKNAEIWVSF-NPKNILDDTYRRFIVHPPQDSIVLKANYDINPHFA 180

Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLI 319
           D+     ++     D D+ R   LG+         I  ++IE A+              I
Sbjct: 181 DTPLLADMLECKERDEDLYRHIWLGEPVADSELAIIKPSWIEAAIDAHEKLGFQAAGKRI 240

Query: 320 MGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
           +G D+A EG D    V R G+++  +  W  + +  +  +
Sbjct: 241 LGFDVADEGDDANATVLRHGSVVTDMRQWRGQDVIYSADK 280


>gi|154175204|ref|YP_001409090.1| Ppx/GppA family phosphatase [Campylobacter curvus 525.92]
 gi|112803006|gb|EAU00350.1| phosphatase, Ppx/GppA family [Campylobacter curvus 525.92]
          Length = 433

 Score =  125 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 57/314 (18%), Positives = 97/314 (30%), Gaps = 42/314 (13%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             WQ E                        I  GR  G T   A   +  +    G  I+
Sbjct: 11  TDWQREVF-------------FKNKAKFTTIEKGRRSGFTKGMANACIEWLI--EGKKIL 55

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +      L+          L  LP   W               +   Q   +      +
Sbjct: 56  WVDTVTANLQRYFERYFVPELKQLPADMW---------------KFHAQDKKLTVGEGYL 100

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGT---PDIINKSILGFFTELNPNRFWIMTS 228
             R+      +            V  +EA        + + +I     +  PN    +  
Sbjct: 101 DMRSA-----ERPENIEGFGYDVVILNEAGIILKNSYLWDNAIRPMLLD-YPNSRAFIGG 154

Query: 229 NTRRLNGWFYDIFNIPLE--DWKRYQIDTRTVEGIDSGFHEGIISRYGL-DSDVARIEIL 285
             +  N +F           DW  +QI +     +     + +I+  G  DSDV + EI 
Sbjct: 155 VPKGKNRFFDLASRGMRNEKDWVNFQISSFENPLLRKEEIDELIAELGGVDSDVVKQEIY 214

Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHI 345
           G+F     N   P + IE A  +    +  A  I G D+A +G D++V+  R G  ++++
Sbjct: 215 GEFLDTTTNALFPLSQIEAAFGKVRAYEPNAVQIWGLDVARDGDDESVLCVREGYHVKNL 274

Query: 346 FDWSAKLIQETNQE 359
             +      E  +E
Sbjct: 275 EGFRIASTTELARE 288


>gi|331035425|gb|AEC52982.1| large terminase protein [Synechococcus phage S-CRM01]
          Length = 567

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 45/377 (11%), Positives = 101/377 (26%), Gaps = 72/377 (19%)

Query: 10  KLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSN 69
             ++++ E++   +C    + F+  +    IK   L+H   P +                
Sbjct: 21  YTKEQIAELI---KCSQDPEYFLENY----IKIISLDHGIIPFK--------PYNFQRKL 65

Query: 70  VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129
           VN+ +   F       R  GK+T     ++     R  ++I  +AN        +     
Sbjct: 66  VNSFHDNRF-TICKLPRQCGKSTTVTAYLIHQAIFRDNINIAILANKRETAYELM----- 119

Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189
                   +     ++L            + S+ +++        T              
Sbjct: 120 -------AKLQLSYENLPKWMQQGVLGWNKGSIELENGSRITASSTS-------SSAVRG 165

Query: 190 THGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP- 244
                V  DE +  P    D    S+    +        ++  +T      FY ++    
Sbjct: 166 FAYNIVMLDEFAFVPTNVADDFFSSVYPTISSG--KSTKVIIVSTPCGMNHFYKMWTDAT 223

Query: 245 --LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIP---- 298
                +   +     V G D  F +  I+   L     + E    F         P    
Sbjct: 224 KGRNSYNPIEAHWSEVPGRDEKFKQETIANTSLSQ--WQQEFETDFIGSVGTLINPAKLK 281

Query: 299 -------------HNYIEEAM--SREAIDDLYAPLIMGCDIAGEGG-DKTVVVFRRGNII 342
                         +  E  +       +      ++  D++     D +        ++
Sbjct: 282 SLVYDEPLLSSGGLDVYEHPIMKDENDENSRDHEYMITVDVSRGMKLDYSAF------LV 335

Query: 343 EHIFDWSAKLIQETNQE 359
             I  +  +L+ +    
Sbjct: 336 FDITQYPHRLVAKYRNN 352


>gi|237704849|ref|ZP_04535330.1| terminase large subunit [Escherichia sp. 3_2_53FAA]
 gi|226901215|gb|EEH87474.1| terminase large subunit [Escherichia sp. 3_2_53FAA]
 gi|315288241|gb|EFU47640.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
           110-3]
          Length = 471

 Score =  123 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 83/277 (29%), Gaps = 24/277 (8%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
               +K A   GRG GK+   A +++   + R  + I+C    +  + +++   +   + 
Sbjct: 13  EAHRYKVA-KGGRGSGKSWAIARLLV-EAARRQPVRILCARELQNSISDSVIRLLEDTIE 70

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
              +   FE+Q   +   G  AE +   +  +                            
Sbjct: 71  REGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPT-----------------KIKSLEGID 113

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
             + +EA          ++    +      W+   N + +    Y  F   P +D     
Sbjct: 114 ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNPPDDICLLT 171

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI- 311
           ++              +      +  + R   LG+         I   ++E A       
Sbjct: 172 VNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKL 231

Query: 312 -DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
                  ++   D +  G D      R G++++ I +
Sbjct: 232 GWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAE 268


>gi|260868683|ref|YP_003235085.1| putative terminase large subunit [Escherichia coli O111:H- str.
           11128]
 gi|293446697|ref|ZP_06663119.1| phage terminase large subunit [Escherichia coli B088]
 gi|257765039|dbj|BAI36534.1| putative terminase large subunit [Escherichia coli O111:H- str.
           11128]
 gi|291323527|gb|EFE62955.1| phage terminase large subunit [Escherichia coli B088]
 gi|323177130|gb|EFZ62720.1| phage terminase, large subunit, PBSX family [Escherichia coli 1180]
          Length = 471

 Score =  123 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 83/277 (29%), Gaps = 24/277 (8%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
               +K A   GRG GK+   A +++   + R  + I+C    +  + +++   +   + 
Sbjct: 13  EAHRYKVA-KGGRGSGKSWAIARLLV-EAARRQPVRILCARELQNSISDSVIRLLEDTIE 70

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
              +   FE+Q   +   G  AE +   +  +                            
Sbjct: 71  REGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPT-----------------KIKSLEGID 113

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
             + +EA          ++    +      W+   N + +    Y  F   P +D     
Sbjct: 114 ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNPPDDICLLT 171

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI- 311
           ++              +      +  + R   LG+         I   ++E A       
Sbjct: 172 VNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKL 231

Query: 312 -DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
                  ++   D +  G D      R G++++ I +
Sbjct: 232 GWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAE 268


>gi|157159763|ref|YP_001457081.1| PBSX family phage terminase large subunit [Escherichia coli HS]
 gi|300935792|ref|ZP_07150755.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
           21-1]
 gi|157065443|gb|ABV04698.1| phage terminase, large subunit, pbsx family [Escherichia coli HS]
 gi|300459025|gb|EFK22518.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
           21-1]
          Length = 471

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 83/277 (29%), Gaps = 24/277 (8%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
               +K A   GRG GK+   A +++   + R  + I+C    +  + +++   +   + 
Sbjct: 13  EAHRYKVA-KGGRGSGKSWAIARLLV-EAARRQPVRILCARELQNSISDSVIRLLEDTIE 70

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
              +   FE+Q   +   G  AE +   +  +                            
Sbjct: 71  REGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPT-----------------KIKSLEGID 113

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
             + +EA          ++    +      W+   N + +    Y  F   P +D     
Sbjct: 114 ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNPPDDICLLT 171

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI- 311
           ++              +      +  + R   LG+         I   ++E A       
Sbjct: 172 VNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKL 231

Query: 312 -DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
                  ++   D +  G D      R G++++ I +
Sbjct: 232 GWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAE 268


>gi|324019922|gb|EGB89141.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
           117-3]
          Length = 471

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 83/277 (29%), Gaps = 24/277 (8%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
               +K A   GRG GK+   A +++   + R  + I+C    +  + +++   +   + 
Sbjct: 13  EAHRYKVA-KGGRGSGKSWAIARLLV-EAARRQPVRILCARELQNSISDSVIRLLEDTIE 70

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
              +   FE+Q   +   G  AE +   +  +                            
Sbjct: 71  REGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPT-----------------KIKSLEGID 113

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
             + +EA          ++    +      W+   N + +    Y  F   P +D     
Sbjct: 114 ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNPPDDICLLT 171

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI- 311
           ++              +      +  + R   LG+         I   ++E A       
Sbjct: 172 VNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKL 231

Query: 312 -DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
                  ++   D +  G D      R G++++ I +
Sbjct: 232 GWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKCIAE 268


>gi|320103661|ref|YP_004179252.1| hypothetical protein Isop_2123 [Isosphaera pallida ATCC 43644]
 gi|319750943|gb|ADV62703.1| hypothetical protein Isop_2123 [Isosphaera pallida ATCC 43644]
          Length = 553

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 65/368 (17%), Positives = 120/368 (32%), Gaps = 46/368 (12%)

Query: 5   ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64
           +  +++  + L   LM  E         +R       G       +P  W+         
Sbjct: 1   MRKEKEEIRTLATPLMVEESTAGMVARALRCLADDPVGFNRLALGRPDYWEG-------- 52

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124
                   +        ++ G  +GK+ L A + LW + T PG  ++  A S+  L   L
Sbjct: 53  --QRRAALALTRARSVVVATGNAVGKSYLAAGLTLWWLYTHPGSLVVATAPSQGLLGTVL 110

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSG-WYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
           + E+ K L+    R       +     G  ++  +     + ++ +            + 
Sbjct: 111 FRELQKALAASRRRGLGLPGMVVGSDRGTPFSLRVGPGRRLAAEGWGCLGIATRG--VER 168

Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243
             G H+   M V  DEASG      +++          R   +  N       F+ +   
Sbjct: 169 LAGRHHADLM-VVVDEASGVQPEAWEALTSL-----NPRKLFVCGNPLTPGTVFHKLHQR 222

Query: 244 PLE-----------DWKRYQIDTRTVEGIDSG----------FHEGIISRYGLDSDVARI 282
            L                  I +     I+            F      ++G  S +   
Sbjct: 223 GLTEASDPSIPDHARGVALTIPSTASPDINLERSPRGLADRGFIREAERQWGRGSPLWLS 282

Query: 283 EILGQFPQQEVNNFIPHNYIEEAMSRE----AIDDLYAPLIMGCDI-AGEGGDKTVVVFR 337
            + G FP   V+  I   ++++A S E      +    P ++GCD+ AG G D+T +V R
Sbjct: 283 HVEGVFPTVAVHALIEPGWLDQAASLERSQTYENPPGQP-VLGCDLAAGVGADRTAIVVR 341

Query: 338 RGNIIEHI 345
               I  +
Sbjct: 342 DEGGIREL 349


>gi|315929403|gb|EFV08605.1| phosphatase, Ppx/GppA family [Campylobacter jejuni subsp. jejuni
           305]
          Length = 430

 Score =  122 bits (305), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 51/310 (16%), Positives = 98/310 (31%), Gaps = 36/310 (11%)

Query: 63  DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN 122
                  V +     F   ++ GR +G T  +A  ++  +    G +++ +        +
Sbjct: 9   YTPAQLKVFDDKNPRF-ITVAKGRRLGFTRGSAKFVIENLLL--GQNVLWV--------D 57

Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182
           T+ A +  +  +               P          S  +  K   I          +
Sbjct: 58  TIQANLQNYYELY------------FTPELKNLPKDFYSWSVQDKKLIINGAVLHMRSAE 105

Query: 183 TFVGPHNTHGMAVFNDEASGTPDI------INKSILGFFTELNPNRFWIMTSNTRRLNGW 236
                       V  +EA               +I       +  +   +     +    
Sbjct: 106 RSENIEGFGYDLVILNEAGIILKGSKGEYLWYNAIRPMLL--DNPKSRAIIGGVPKGKNL 163

Query: 237 FYDIFNIPLED--WKRYQIDTRTVEGIDSGFHEGIISRYG-LDSDVARIEILGQFPQQEV 293
           FY++    L D  WK +Q  +     +     + +I   G   S+V + EI G+F     
Sbjct: 164 FYELCRKELSDKNWKHFQFSSYDNPFLKEEQIKELIEEVGGEGSEVVKQEIYGEFIDSSS 223

Query: 294 NNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
                 + IE AMS+ +   + +    I G D+A  G DK+ +  R+G +I  I  +S  
Sbjct: 224 AELFSLSEIENAMSKNSFSIEKMQGENIWGLDVARYGDDKSALAKRKGFVIYEIKKYSQL 283

Query: 352 LIQETNQEGC 361
              E   +  
Sbjct: 284 GTIELANKIL 293


>gi|57237579|ref|YP_178593.1| terminase B protein, putative [Campylobacter jejuni RM1221]
 gi|57166383|gb|AAW35162.1| terminase B protein, putative [Campylobacter jejuni RM1221]
          Length = 430

 Score =  122 bits (305), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 51/310 (16%), Positives = 98/310 (31%), Gaps = 36/310 (11%)

Query: 63  DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN 122
                  V +     F   ++ GR +G T  +A  ++  +    G +++ +        +
Sbjct: 9   YTPAQLKVFDDKNPRF-ITVAKGRRLGFTRGSAKFVIENLLL--GQNVLWV--------D 57

Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182
           T+ A +  +  +               P          S  +  K   I          +
Sbjct: 58  TIQANLQNYYELY------------FTPELKNLPKDFYSWSVQDKKLIINGAVLHMRSAE 105

Query: 183 TFVGPHNTHGMAVFNDEASGTPDI------INKSILGFFTELNPNRFWIMTSNTRRLNGW 236
                       V  +EA               +I       +  +   +     +    
Sbjct: 106 RSENIEGFGYDLVILNEAGIILKGSKGEYLWYNAIRPMLL--DNPKSRAIIGGVPKGKNL 163

Query: 237 FYDIFNIPLED--WKRYQIDTRTVEGIDSGFHEGIISRYG-LDSDVARIEILGQFPQQEV 293
           FY++    L D  WK +Q  +     +     + +I   G   S+V + EI G+F     
Sbjct: 164 FYELCRKELSDKNWKHFQFSSYDNPFLKEEQIKELIEEVGGEGSEVVKQEIYGEFIDSSS 223

Query: 294 NNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
                 + IE AMS+ +   + +    I G D+A  G DK+ +  R+G +I  I  +S  
Sbjct: 224 AELFSLSEIENAMSKNSFSIEKMQGENIWGLDVARYGDDKSALAKRKGFVIYEIKKYSQL 283

Query: 352 LIQETNQEGC 361
              E   +  
Sbjct: 284 GTIELANKIL 293


>gi|310005828|gb|ADP00213.1| DNA maturase beta subunit [Cyanophage Syn26]
          Length = 577

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 52/371 (14%), Positives = 87/371 (23%), Gaps = 81/371 (21%)

Query: 27  SFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR 86
            FK F+     W     P      P R Q     A+  +  S          +  I A R
Sbjct: 11  DFKLFLQAL--WDQLDLP-----SPTRAQ----YAIADYLQSGPK-------RLQIQAFR 52

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G+GK+ +    +LW +       I+ I+ S+ +  N         +     +H       
Sbjct: 53  GVGKSWITGAFVLWTLFNNAEKKIMIISASKERADNMSIFLQKLIIETPWLKHLRPKSDD 112

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCR----------TYSEERPDTFVGPHNTHGMAVF 196
           +      +  L         K   IT +              E P   +       +   
Sbjct: 113 ARWSRISFDVLCSPHQAPSVKSVGITGQMTGSRADLMILDDIEVPGNSMTELMREKLLQL 172

Query: 197 NDEASGT--------------PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242
             EA                 P                   W      + +  +   I  
Sbjct: 173 CTEAESILTPKDDSRIMYLGTPQTTFTVYRKLAERNYRPFVWPARF-PKNITPYEGLIAP 231

Query: 243 IPLEDWKRYQID--TRTVEGIDSGFHEGIISRYGLDSDVARIE----------------- 283
              ED         +   +  D        S  G  + + +                   
Sbjct: 232 QLQEDIDNGAQPGESTDPDRFDDEDLLQRESSMGRSNFMLQFMLDTSLSDAEKFPLKMAD 291

Query: 284 --ILGQFPQQEVNNFI-----------------PHNYIEEAMSREAIDDLYAPLIMGCDI 324
             +    P +  +N I                 P +Y    M  +     Y   I   D 
Sbjct: 292 LVVTSVNPTEAPDNVIWCSDPRNVIKDLPTVGLPGDYFYSPMQLQGEWTPYQETICSVDP 351

Query: 325 AGEGGDKTVVV 335
           +G G D+T   
Sbjct: 352 SGRGSDETAAC 362


>gi|294492319|gb|ADE91075.1| phage terminase, large subunit, PBSX family [Escherichia coli
           IHE3034]
          Length = 471

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 83/277 (29%), Gaps = 24/277 (8%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
               +K A   GRG GK+   A +++   + R  + I+C    +  + +++   +   + 
Sbjct: 13  EAHRYKVA-KGGRGSGKSWAIARLLV-EAARRQPVRILCARELQNSISDSVIRLLEDTIE 70

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
              +   FE+Q   +   G  AE +   +  +                            
Sbjct: 71  REGYTAEFEIQRSMIRHLGTNAEFMFYGIKNNPT-----------------KIKSLEGID 113

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
             + +EA          ++    +      W+   N + +    Y  F   P +D     
Sbjct: 114 ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNPPDDICLLT 171

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI- 311
           ++              +      +  + R   LG+         I   ++E A       
Sbjct: 172 VNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKL 231

Query: 312 -DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
                  ++   D +  G D      R G++++ I +
Sbjct: 232 GWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAE 268


>gi|222032743|emb|CAP75482.1| Terminase large subunit [Escherichia coli LF82]
          Length = 470

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 83/277 (29%), Gaps = 24/277 (8%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
               +K A   GRG GK+   A +++   + R  + I+C    +  + +++   +   + 
Sbjct: 13  EAHRYKVA-KGGRGSGKSWAIARLLV-EAARRQPVRILCARELQNSISDSVIRLLEDTIE 70

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
              +   FE+Q   +   G  AE +   +  +                            
Sbjct: 71  REGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPT-----------------KIKSLEGID 113

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
             + +EA          ++    +      W+   N + +    Y  F   P +D     
Sbjct: 114 ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNPPDDICLLT 171

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI- 311
           ++              +      +  + R   LG+         I   ++E A       
Sbjct: 172 VNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKL 231

Query: 312 -DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
                  ++   D +  G D      R G++++ I +
Sbjct: 232 GWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAE 268


>gi|91211665|ref|YP_541651.1| terminase large subunit [Escherichia coli UTI89]
 gi|117624554|ref|YP_853467.1| phage terminase large subunit [Escherichia coli APEC O1]
 gi|218559279|ref|YP_002392192.1| Terminase large subunit [Escherichia coli S88]
 gi|91073239|gb|ABE08120.1| terminase large subunit [Escherichia coli UTI89]
 gi|115513678|gb|ABJ01753.1| phage terminase large subunit [Escherichia coli APEC O1]
 gi|148566126|gb|ABQ88401.1| phage terminase large subunit [Enterobacteria phage CUS-3]
 gi|218366048|emb|CAR03793.1| Terminase large subunit [Escherichia coli S88]
 gi|307626097|gb|ADN70401.1| terminase large subunit [Escherichia coli UM146]
 gi|323948780|gb|EGB44679.1| phage terminase large subunit [Escherichia coli H252]
          Length = 471

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 83/277 (29%), Gaps = 24/277 (8%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
               +K A   GRG GK+   A +++   + R  + I+C    +  + +++   +   + 
Sbjct: 13  EAHRYKVA-KGGRGSGKSWAIARLLV-EAARRQPVRILCARELQNSISDSVIRLLEDTIE 70

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
              +   FE+Q   +   G  AE +   +  +                            
Sbjct: 71  REGYTAEFEIQRSMIRHLGTNAEFMFYGIKNNPT-----------------KIKSLEGID 113

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
             + +EA          ++    +      W+   N + +    Y  F   P +D     
Sbjct: 114 ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNPPDDICLLT 171

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI- 311
           ++              +      +  + R   LG+         I   ++E A       
Sbjct: 172 VNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKL 231

Query: 312 -DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
                  ++   D +  G D      R G++++ I +
Sbjct: 232 GWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAE 268


>gi|13559866|ref|NP_112076.1| terminase large subunit [Enterobacteria phage HK620]
 gi|13517602|gb|AAK28891.1|AF335538_43 terminase large subunit [Salmonella phage HK620]
          Length = 470

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 83/277 (29%), Gaps = 24/277 (8%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
               +K A   GRG GK+   A +++   + R  + I+C    +  + +++   +   + 
Sbjct: 13  EAHRYKVA-KGGRGSGKSWAIARLLV-EAARRQPVRILCARELQNSISDSVIRLLEDTIE 70

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
              +   FE+Q   +   G  AE +   +  +                            
Sbjct: 71  REGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPT-----------------KIKSLEGID 113

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
             + +EA          ++    +      W+   N + +    Y  F   P +D     
Sbjct: 114 ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNPPDDICLLT 171

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI- 311
           ++              +      +  + R   LG+         I   ++E A       
Sbjct: 172 VNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKL 231

Query: 312 -DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
                  ++   D +  G D      R G++++ I +
Sbjct: 232 GWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAE 268


>gi|325497784|gb|EGC95643.1| gene 2 protein [Escherichia fergusonii ECD227]
          Length = 470

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 83/277 (29%), Gaps = 24/277 (8%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
               +K A   GRG GK+   A +++   + R  + I+C    +  + +++   +   + 
Sbjct: 13  EAHRYKVA-KGGRGSGKSWAIARLLV-EAARRQPVRILCARELQNSISDSVIRLLEDTIE 70

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
              +   FE+Q   +   G  AE +   +  +                            
Sbjct: 71  REGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPT-----------------KIKSLEGID 113

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
             + +EA          ++    +      W+   N + +    Y  F   P +D     
Sbjct: 114 ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNPPDDICLLT 171

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI- 311
           ++              +      +  + R   LG+         I   ++E A       
Sbjct: 172 VNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKL 231

Query: 312 -DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
                  ++   D +  G D      R G++++ I +
Sbjct: 232 GWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAE 268


>gi|300897414|ref|ZP_07115839.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
           198-1]
 gi|300358826|gb|EFJ74696.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
           198-1]
          Length = 470

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 83/277 (29%), Gaps = 24/277 (8%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
               +K A   GRG GK+   A +++   + R  + I+C    +  + +++   +   + 
Sbjct: 13  EAHRYKVA-KGGRGSGKSWAIARLLV-EAARRQPVRILCARELQNSISDSVIRLLEDTIE 70

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
              +   FE+Q   +   G  AE +   +  +                            
Sbjct: 71  REGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPT-----------------KIKSLEGID 113

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
             + +EA          ++    +      W+   N + +    Y  F   P +D     
Sbjct: 114 ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNPPDDICLLT 171

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI- 311
           ++              +      +  + R   LG+         I   ++E A       
Sbjct: 172 VNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKL 231

Query: 312 -DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
                  ++   D +  G D      R G++++ I +
Sbjct: 232 GWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAE 268


>gi|41057280|ref|NP_958178.1| gene 2 protein [Enterobacteria phage Sf6]
 gi|191165541|ref|ZP_03027382.1| phage terminase, large subunit, pbsx family [Escherichia coli B7A]
 gi|218695968|ref|YP_002403635.1| Terminase large subunit [Escherichia coli 55989]
 gi|331678314|ref|ZP_08378989.1| phage terminase, large subunit, PBSX family [Escherichia coli H591]
 gi|33334159|gb|AAQ12192.1| gene 2 protein [Shigella phage Sf6]
 gi|190904464|gb|EDV64172.1| phage terminase, large subunit, pbsx family [Escherichia coli B7A]
 gi|218352700|emb|CAU98482.1| Terminase large subunit [Escherichia coli 55989]
 gi|324114096|gb|EGC08069.1| phage terminase large subunit [Escherichia fergusonii B253]
 gi|331074774|gb|EGI46094.1| phage terminase, large subunit, PBSX family [Escherichia coli H591]
          Length = 470

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 83/277 (29%), Gaps = 24/277 (8%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
               +K A   GRG GK+   A +++   + R  + I+C    +  + +++   +   + 
Sbjct: 13  EAHRYKVA-KGGRGSGKSWAIARLLV-EAARRQPVRILCARELQNSISDSVIRLLEDTIE 70

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
              +   FE+Q   +   G  AE +   +  +                            
Sbjct: 71  REGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPT-----------------KIKSLEGID 113

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
             + +EA          ++    +      W+   N + +    Y  F   P +D     
Sbjct: 114 ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNPPDDICLLT 171

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI- 311
           ++              +      +  + R   LG+         I   ++E A       
Sbjct: 172 VNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKL 231

Query: 312 -DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
                  ++   D +  G D      R G++++ I +
Sbjct: 232 GWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAE 268


>gi|260856407|ref|YP_003230298.1| putative terminase large subunit [Escherichia coli O26:H11 str.
           11368]
 gi|257755056|dbj|BAI26558.1| putative terminase large subunit [Escherichia coli O26:H11 str.
           11368]
          Length = 470

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 84/277 (30%), Gaps = 24/277 (8%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
               +K A   GRG GK+   A +++   + R  + I+C    +  + +++   +   + 
Sbjct: 13  EAHRYKVA-KGGRGSGKSWAIARLLV-EAARRQPVRILCARELQNSISDSVIRLLEDTIE 70

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
              +   FE+Q   +   G  AE +   +  +                            
Sbjct: 71  REGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPT-----------------KIKSLEGID 113

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
             + +EA          ++    +      W+   N + +    Y  F   P +D     
Sbjct: 114 ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNPPDDICLLT 171

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REA 310
           ++              +      +  + R   LG+         I   ++E A     + 
Sbjct: 172 VNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHTKL 231

Query: 311 IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
                  ++   D +  G D      R G++++ I +
Sbjct: 232 GWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAE 268


>gi|323936486|gb|EGB32774.1| phage terminase large [Escherichia coli E1520]
          Length = 470

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 83/277 (29%), Gaps = 24/277 (8%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
               +K A   GRG GK+   A +++   + R  + I+C    +  + +++   +   + 
Sbjct: 13  EAHRYKVA-KGGRGSGKSWAIARLLV-EAARRQPVRILCARELQNSISDSVIRLLEDTIE 70

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
              +   FE+Q   +   G  AE +   +  +                            
Sbjct: 71  REGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPT-----------------KIKSLEGID 113

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
             + +EA          ++    +      W+   N + +    Y  F   P +D     
Sbjct: 114 ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNPPDDICLLT 171

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI- 311
           ++              +      +  + R   LG+         I   ++E A       
Sbjct: 172 VNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKL 231

Query: 312 -DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
                  ++   D +  G D      R G++++ I +
Sbjct: 232 GWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAE 268


>gi|168260952|ref|ZP_02682925.1| phage terminase, large subunit, pbsx family [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|205349913|gb|EDZ36544.1| phage terminase, large subunit, pbsx family [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
          Length = 471

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 83/277 (29%), Gaps = 24/277 (8%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
               +K A   GRG GK+   A +++   + R  + I+C    +  + +++   +   + 
Sbjct: 13  EAHRYKVA-KGGRGSGKSWAIARLLV-EAARRQPVRILCARELQNSISDSVIRLLEDTIE 70

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
              +   FE+Q   +   G  AE +   +  +                            
Sbjct: 71  REGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPT-----------------KIKSLEGID 113

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
             + +EA          ++    +      W+   N + +    Y  F   P +D     
Sbjct: 114 ICWVEEAEAVTKESWDILIPTIRKTFSE-IWVSF-NPKNILDDTYQRFVVNPPDDICLLT 171

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI- 311
           ++              +      +  + R   LG+         I   ++E A       
Sbjct: 172 VNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKL 231

Query: 312 -DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
                  ++   D +  G D      R G++++ I +
Sbjct: 232 GWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAE 268


>gi|310005737|gb|ADP00124.1| DNA maturase beta subunit [Cyanophage NATL1A-7]
          Length = 577

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/374 (13%), Positives = 86/374 (22%), Gaps = 81/374 (21%)

Query: 24  CVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS 83
               FK F+     W     P      P R Q     ++  +             +  I 
Sbjct: 8   LKDDFKLFLQAL--WEELDLP-----SPTRAQ----YSIADYLQHGPK-------RLQIQ 49

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           A RG+GK+ +    +LW +   P   I+ I+ S+ +  N         +     +H    
Sbjct: 50  AFRGVGKSWITGAFVLWTLFKDPEKKIMIISASKERADNMSIFLQKLIIETAWLKHLRPK 109

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY----------SEERPDTFVGPHNTHGM 193
              S      +  L         K   IT +              E P   +       +
Sbjct: 110 SEDSRWSRISFDVLCSPHQAPSVKSVGITGQLTGSRADLMILDDIEVPGNSMTELMREKL 169

Query: 194 AVFNDEASGT--------------PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
                EA                 P                   W      + L  +   
Sbjct: 170 LQLCTEAESILTPKDDSRIMYLGTPQTTFTVYRKLAERAYRPFVWPARY-PKSLANYEGL 228

Query: 240 IFNIPLEDWK--RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE-------------- 283
           I     ED             +  +        +  G  + + +                
Sbjct: 229 IAPQLQEDIDIGAEAGACTDPDRFNDDDLIEREASMGRSNFMLQFMLDTSLSDAEKFPLK 288

Query: 284 -----ILGQFPQQEVNNFI-----------------PHNYIEEAMSREAIDDLYAPLIMG 321
                +    P +  ++ +                 P +Y    M  +     Y   I  
Sbjct: 289 MADLVVTSVNPYEAPDSVVWCSDPRNVIKELPTVGLPGDYFYSPMQLQGEWSKYTETICS 348

Query: 322 CDIAGEGGDKTVVV 335
            D +G G D+T   
Sbjct: 349 VDPSGRGSDETAAA 362


>gi|298381518|ref|ZP_06991117.1| phage terminase large subunit [Escherichia coli FVEC1302]
 gi|298278960|gb|EFI20474.1| phage terminase large subunit [Escherichia coli FVEC1302]
          Length = 470

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/277 (12%), Positives = 82/277 (29%), Gaps = 24/277 (8%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
               +K A   GRG GK+   A +++   + R  + I+C    +  + +++   +   + 
Sbjct: 13  EAHRYKVA-KGGRGSGKSWAIARLLV-EAARRQPVRILCARELQNSISDSVIRLLEDTIE 70

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
              +   FE+Q   +   G  AE +   +  +                            
Sbjct: 71  REGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPT-----------------KIKSLEGID 113

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
             + +EA          ++    +      W+   N + +    Y  F   P +D     
Sbjct: 114 ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNPPDDICLLT 171

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI- 311
           ++              +      +  + R   LG+             ++E A       
Sbjct: 172 VNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIFKREWLEAATDAHKKL 231

Query: 312 -DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
                  ++   D +  G D      R G++++ I +
Sbjct: 232 GWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAE 268


>gi|168239626|ref|ZP_02664684.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|197287704|gb|EDY27095.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
          Length = 470

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 83/277 (29%), Gaps = 24/277 (8%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
               +K A   GRG GK+   A +++   + R  + I+C    +  + +++   +   + 
Sbjct: 13  EAHRYKVA-KGGRGSGKSWAIARLLV-EAARRQPVRILCARELQNSISDSVIRLLEDTIE 70

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
              +   FE+Q   +   G  AE +   +  +                            
Sbjct: 71  REGYAAEFEIQRSMIRHLGTNAEFMFYGIKNNPT-----------------KIKSLEGID 113

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
             + +EA          ++    +      W+   N + +    Y  F   P +D     
Sbjct: 114 ICWVEEAEAVTKESWDILVPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNPPDDICLLT 171

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI- 311
           ++              +      +  + R   LG+         I   ++E A       
Sbjct: 172 VNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKL 231

Query: 312 -DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
                  ++   D +  G D      R G++++ I +
Sbjct: 232 GWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAE 268


>gi|294663744|gb|ADF29298.1| terminase [Pseudomonas phage JG024]
          Length = 460

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 81/278 (29%), Gaps = 24/278 (8%)

Query: 77  IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136
            +K  I  GR   K+     + +  ++    +  +C    + ++  +++  +   +    
Sbjct: 17  RYKV-IYGGRASSKSHDAGGIAV-FLAANYKLKFLCARQFQNRISESVYTLIKDKIENSE 74

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
           +   F     S+      +E                   +     +            ++
Sbjct: 75  YNGEFIFTKNSIKHKSTGSE-----------------FLFYGIARNLSEIKSTEGIDILW 117

Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDT 255
            +EA        + I     + N   +  +  N   +  + Y  F   P +D     I+ 
Sbjct: 118 LEEAHYLTQEQWEVIEPTIRKENSEIW--IIFNPNEVTDFVYQNFVVKPPKDSCVKMINW 175

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DD 313
                +     + I   Y  D + A     G        + I   +I  A+        +
Sbjct: 176 NENPFLSETMLKVIHEAYERDREQAEHIYGGIPKTGGDKSVINLKFILAAIDAHKKLGWE 235

Query: 314 LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
                 +G D+A +G D        GN+I  + +W   
Sbjct: 236 PAGSKRIGFDVADDGDDANATTLMHGNVIMEVDEWDGL 273


>gi|315122636|ref|YP_004063125.1| putative phage terminase, large subunit [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496038|gb|ADR52637.1| putative phage terminase, large subunit [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 301

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 4/152 (2%)

Query: 10  KLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSN 69
           + +  L + ++      +   F    + WG +G PL +   P  WQ E    +      N
Sbjct: 10  EYDTALLQNVLSPAIAGNPLAFTKYMYRWGEEGTPLANCKGPRAWQTEVFLELAEFIEKN 69

Query: 70  VNNS----NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW 125
                      +FK AI++ RGIGKT L AW+  W +STR G +++  ANS+ Q K T +
Sbjct: 70  KEAKRLGKPLQVFKLAIASARGIGKTALVAWITYWFLSTRIGCTVVISANSDDQCKTTSF 129

Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
           AE+ +W S+  + H+FE        +G  +  
Sbjct: 130 AEIRRWHSLAKNAHFFEANIAEALLAGGCSPW 161


>gi|153951273|ref|YP_001397540.1| putative terminase B protein [Campylobacter jejuni subsp. doylei
           269.97]
 gi|153951467|ref|YP_001398214.1| putative terminase B protein [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152938719|gb|ABS43460.1| putative terminase B protein [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152938913|gb|ABS43654.1| putative terminase B protein [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 430

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/293 (17%), Positives = 93/293 (31%), Gaps = 35/293 (11%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             ++ GR +G T      ++  +    G +++ +        +T+ A +  +  +     
Sbjct: 25  ITVAKGRRLGFTRGCVKYVIENLI--EGKNVLWV--------DTIQANLQNYYELY---- 70

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                     P          S  +  K   I          +            V  +E
Sbjct: 71  --------FTPELKNLPKDFYSWSVQDKKLIINGAVLHMRSAERSENIEGFAYDLVILNE 122

Query: 200 ASGTPDI------INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED--WKRY 251
           A               SI       +  +   +     +    FY++    L D  WK +
Sbjct: 123 AGIILKDSKGGYLWYNSIRPMLL--DNPKSRAIIGGVPKGKNLFYELCRKELSDKNWKHF 180

Query: 252 QIDTRTVEGIDSGFHEGIISRYG-LDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
           Q  +     +     + +I   G   SDV R EI G+F           + IE AMS+ +
Sbjct: 181 QFSSYDNPFLKEEQIKELIEEVGGESSDVVRQEIYGEFIDSSSAELFSLSGIENAMSKNS 240

Query: 311 IDDLY--APLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC 361
                     I G D+A  G DK+V+  R+G +I+ +  +S     E   +  
Sbjct: 241 FSTQKMQGENIWGLDVARYGDDKSVLAKRKGFVIDELKKYSQLGTIELANKIL 293


>gi|261381054|ref|ZP_05985627.1| phage terminase, large subunit, PBSX family [Neisseria subflava
           NJ9703]
 gi|284796087|gb|EFC51434.1| phage terminase, large subunit, PBSX family [Neisseria subflava
           NJ9703]
          Length = 450

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 41/282 (14%), Positives = 95/282 (33%), Gaps = 23/282 (8%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           ++  GRG  K+   A +++ L        I+C    +  + +++ + +S  +    +   
Sbjct: 20  SLRGGRGGMKSWAVATVLVELARKGR-FRIMCARELQNSISDSVISLLSDTIDRAGYTQE 78

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
           +E+Q   +      +E L   +  +                              + +EA
Sbjct: 79  YEVQRNRIIHLSTGSEFLFYGIKNNPTKIKSI-----------------EAIDICWIEEA 121

Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVE 259
               D     ++    +      W+   N + +    Y  F   P +D     ++     
Sbjct: 122 ENVSDESWNILIPTIRKAGSE-IWLTW-NPKNILDPTYQRFVVNPPDDMVDIVVNYTDNI 179

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAP 317
            +         S    D D+ R   LG+       + I   +I+ A+        +    
Sbjct: 180 YLPEVLRLEAESCKARDYDLYRHIWLGEPVADSELSVIKPKWIDAAIDSHIKLGFEATGQ 239

Query: 318 LIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
            I+G D+A EG D +  + R G+++  + +W  + +  +  +
Sbjct: 240 RILGFDVADEGDDASATILRHGSVVIDMDEWRGQDVIYSADK 281


>gi|218148543|ref|YP_002364311.1| terminase, large subunit [Pseudomonas phage 14-1]
 gi|218059739|emb|CAU13815.1| terminase, large subunit [Pseudomonas phage 14-1]
          Length = 460

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 81/278 (29%), Gaps = 24/278 (8%)

Query: 77  IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136
            +K  I  GR   K+     + +  ++    +  +C    + ++  +++  +   +    
Sbjct: 17  RYKV-IYGGRASSKSHDAGGIAV-FLAANYKLKFLCARQFQNRISESVYTLIKDKIENSE 74

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
           +   F     S+      +E                   +     +            ++
Sbjct: 75  YNGEFIFTKNSIKHKITGSE-----------------FLFYGIARNLSEIKSTEGIDILW 117

Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDT 255
            +EA        + I     + N   +  +  N   +  + Y  F   P +D     I+ 
Sbjct: 118 LEEAHYLTQEQWEVIEPTIRKENSEIW--IIFNPNEVTDFVYQNFVVKPPKDSCVKMINW 175

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DD 313
                +     + I   Y  D + A     G        + I   +I  A+        +
Sbjct: 176 NENPFLSETMLKVIHEAYERDREQAEHIYGGIPKTGGDKSVINLKFILAAIDAHKKLGWE 235

Query: 314 LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
                 +G D+A +G D        GN+I  + +W   
Sbjct: 236 PAGSKRIGFDVADDGEDANATTLMHGNVIMEVDEWDGL 273


>gi|218457805|ref|YP_002418810.1| terminase, large subunit [Pseudomonas phage SN]
 gi|218379073|emb|CAT99652.1| terminase, large subunit [Pseudomonas phage SN]
          Length = 460

 Score =  120 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 81/278 (29%), Gaps = 24/278 (8%)

Query: 77  IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136
            +K  I  GR   K+     + +  ++    +  +C    + ++  +++  +   +    
Sbjct: 17  RYKV-IYGGRASSKSHDAGGIAV-FLAANYKLKFLCARQFQNRISESVYTLIKDKIENSE 74

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
           +   F     S+      +E                   +     +            ++
Sbjct: 75  YNGEFIFTKNSIKHKSTGSE-----------------FLFYGIARNLSEIKSTEGIDILW 117

Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDT 255
            +EA        + I     + N   +  +  N   +  + Y  F   P +D     I+ 
Sbjct: 118 LEEAHYLTQEQWEVIEPTIRKENSEIW--IIFNPNEVTDFVYQNFVVKPPKDSCVKMINW 175

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DD 313
                +     + I   Y  D + A     G        + I   +I  A+        +
Sbjct: 176 NENPFLSETMLKVIHEAYERDREQAEHIYGGIPKTGGDKSVINLKFILAAIDAHKKLGWE 235

Query: 314 LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
                 +G D+A +G D        GN+I  + +W   
Sbjct: 236 PAGSKRIGFDVADDGEDANATTLMHGNVIMEVDEWDGL 273


>gi|197261421|ref|YP_002154236.1| putative terminase, large subunit [Pseudomonas phage LMA2]
 gi|197244511|emb|CAR31245.1| putative terminase, large subunit [Pseudomonas phage LMA2]
          Length = 460

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 81/278 (29%), Gaps = 24/278 (8%)

Query: 77  IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136
            +K  I  GR   K+     + +  ++    +  +C    + ++  +++  +   +    
Sbjct: 17  RYKV-IYGGRASSKSHDAGGIAV-FLAANYKLKFLCARQFQNRISESVYTLIKDKIENSE 74

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
           +   F     S+      +E                   +     +            ++
Sbjct: 75  YNGEFIFTKNSIKHKITGSE-----------------FLFYGIARNLSEIKSTEGIDILW 117

Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDT 255
            +EA        + I     + N   +  +  N   +  + Y  F   P +D     I+ 
Sbjct: 118 LEEAHYLTQEQWEVIEPTIRKENSEIW--IIFNPNEVTDFVYQNFVVKPPKDSCVKMINW 175

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DD 313
                +     + I   Y  D + A     G        + I   +I  A+        +
Sbjct: 176 NENPFLSETMLKVIHEAYERDREQAEHIYGGIPKTGGDKSVINLKFILAAIDAHKKLGWE 235

Query: 314 LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
                 +G D+A +G D        GNII  + +W   
Sbjct: 236 PAGSKRIGFDVADDGEDANATTLMHGNIIMEVDEWDGL 273


>gi|227113418|ref|ZP_03827074.1| Terminase large subunit [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 472

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 81/274 (29%), Gaps = 24/274 (8%)

Query: 77  IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136
            +K A   GRG  K+   A +++   + R  + I+C    +  + +++   +   +    
Sbjct: 16  RYKVA-KGGRGSSKSWSIARLIV-EAARRQSIRILCARELQNSISDSVIRLLEDTIEREG 73

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
           +   FE+Q   +   G  AE +   +  +                              +
Sbjct: 74  YTAEFEIQRSMIRHLGTNAEFMFYGIKNNPT-----------------KIKSLEGVDICW 116

Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDT 255
            +EA          ++    +      W+   N + +    Y  F   P +D     ++ 
Sbjct: 117 VEEAEAVTKESWDILIPTIRKPGSE-IWVSF-NPKNILDDTYQRFVVTPPDDICLLTVNY 174

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DD 313
                        +      +  + R   LG+         I   ++E A          
Sbjct: 175 TDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASEMAIIKREWLEAATDAHIKLGWK 234

Query: 314 LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
               ++   D +  G D      R G++++ I  
Sbjct: 235 AKGAIVAAHDPSDTGPDDKGYAMRHGSVVKRIAS 268


>gi|317152051|ref|YP_004120099.1| hypothetical protein Daes_0328 [Desulfovibrio aespoeensis Aspo-2]
 gi|316942302|gb|ADU61353.1| protein of unknown function DUF264 [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 428

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 75/293 (25%), Gaps = 39/293 (13%)

Query: 79  KCAISAG-RGIGKTTLNAWMMLWLI--STRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
           + ++    R  GKT L+   ++     ++R       IA    Q K  +W E+ ++  + 
Sbjct: 21  RFSVLVCHRRFGKTVLSVNRLIRAARTTSRTDWRGAYIAPLYKQAKTVVWDELKRYCGLG 80

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
                 +     L                                 +        +    
Sbjct: 81  LDGCTVKFNETELRAD------------------FDNGARIRLFGAENPDSLRGMYLDGA 122

Query: 196 FNDEASGTPDIIN-KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254
             DE +  P  +  + I    ++      W M   T R     Y ++     D   +   
Sbjct: 123 VFDEVAQMPHRVWTEVIRPALSD---RMGWAMFIGTPRGKNALYRLWQDARRDPDWFAAM 179

Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE---AMSREAI 311
            R  +       E   +   +  +    E    F       +      E        +  
Sbjct: 180 YRASQTGIIEPGELAAAAREMSPEEYEQEFECSFTAAIRGAYFSALIGEADKGGRITKVP 239

Query: 312 DDLYAPLIMGCDIAGEGGDKTVVVF---RRGNIIEHIFDWSAKLIQETNQEGC 361
            D   P+    D+     D T + F   R GN    +         E + EG 
Sbjct: 240 HDPSLPVHTAWDLGM--SDSTAIWFVQARPGNAFAIV------DYYEASGEGL 284


>gi|197261331|ref|YP_002154147.1| putative terminase, large subunit [Pseudomonas phage LBL3]
 gi|197244421|emb|CAR31156.1| putative terminase, large subunit [Pseudomonas phage LBL3]
          Length = 460

 Score =  118 bits (296), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 81/278 (29%), Gaps = 24/278 (8%)

Query: 77  IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136
            +K  I  GR   K+     + +  ++    +  +C    + ++  +++  +   +    
Sbjct: 17  RYKV-IYGGRASSKSHDAGGIAV-YLAANYRLKFLCARQFQNRISESVYTLIKDKIENSE 74

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
           +   F     S+      +E                   +     +            ++
Sbjct: 75  YNGEFIFTKNSIKHKRTGSE-----------------FLFYGIARNLSEIKSTEGIDILW 117

Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDT 255
            +EA        + I     + N   +  +  N   +  + Y  F   P +D     I+ 
Sbjct: 118 LEEAHYLTQEQWEVIEPTIRKENSEIW--IIFNPNEVTDFVYQNFVVKPPKDSCVKMINW 175

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DD 313
                +     + I   Y  D + A     G        + I   +I  A+        +
Sbjct: 176 NENPFLSETMLKVIHEAYERDREQAEHIYGGIPKTGGDKSVINLKFILAAIDAHKKLGWE 235

Query: 314 LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
                 +G D+A +G D        GN+I  + +W   
Sbjct: 236 PAGSKRIGFDVADDGEDANATTLMHGNVIMEVDEWDGL 273


>gi|157265379|ref|YP_001467938.1| terminase large subunit [Thermus phage P23-45]
 gi|156905274|gb|ABU96918.1| terminase large subunit [Thermus phage P23-45]
          Length = 485

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/310 (15%), Positives = 90/310 (29%), Gaps = 35/310 (11%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
           E +     H    ++ S     + A   GR  GK+   +   ++ +  RPG     IA +
Sbjct: 12  ELLGYKPHHVQLAIHRSTAKR-RVACL-GRQSGKSEAASVEAVFELFARPGSQGWIIAPT 69

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
             Q +      V K   +       E+Q                          +    +
Sbjct: 70  YDQAEIIFGRVVEKVERLAEVFPATEVQLQRRRLRLLVHHYDRPV--NAPGAKRVATSEF 127

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNPNRFWIMTSNTRRLNG 235
             +  D            V  DEA+  P  +  ++I    +  +    W +  +T +   
Sbjct: 128 RGKSADRPDNLRGATLDFVILDEAAMIPFSVWSEAIEPTLSVRDG---WALIISTPKGLN 184

Query: 236 WFYDIF-----------------NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278
           WFY+ F                 N    D++ +   +  V          +  R  +   
Sbjct: 185 WFYEFFLMGWRGGLKEGIPNSGVNQTHPDFESFHAASWDV--WPERREWYMERRLYIPDL 242

Query: 279 VARIEILGQFPQQEVNNFIPHNYI-----EEAMSREAIDD--LYAPLIMGCDIAGEGGDK 331
             R E   +F     + F   + +     E   +R  ++D        +G D  G+  D 
Sbjct: 243 EFRQEYGAEFVSHSNSVFSGLDMLILLPYERRGTRLVVEDYRPDHIYCIGADF-GKNQDY 301

Query: 332 TVVVFRRGNI 341
           +V      + 
Sbjct: 302 SVFSVLDLDT 311


>gi|157265496|ref|YP_001468054.1| phage terminase large subunit [Thermus phage P74-26]
 gi|156905391|gb|ABU97034.1| phage terminase large subunit [Thermus phage P74-26]
          Length = 485

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/310 (15%), Positives = 90/310 (29%), Gaps = 35/310 (11%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
           E +     H    ++ S     + A   GR  GK+   +   ++ +  RPG     IA +
Sbjct: 12  ELLGYKPHHVQLAIHRSTAKR-RVACL-GRQSGKSEAASVEAVFELFARPGSQGWIIAPT 69

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
             Q +      V K   +       E+Q                          +    +
Sbjct: 70  YDQAEIIFGRVVEKVERLAEVFPATEVQLQRRRLRLLVHHYDRPV--NAPGAKRVATSEF 127

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNPNRFWIMTSNTRRLNG 235
             +  D            V  DEA+  P  +  ++I    +  +    W +  +T +   
Sbjct: 128 RGKSADRPDNLRGATLDFVILDEAAMIPFSVWSEAIEPTLSVRDG---WALIISTPKGLN 184

Query: 236 WFYDIF-----------------NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278
           WFY+ F                 N    D++ +   +  V          +  R  +   
Sbjct: 185 WFYEFFLMGWRGGLKEGIPNSGINQTHPDFESFHAASWDV--WPERREWYMERRLYIPDL 242

Query: 279 VARIEILGQFPQQEVNNFIPHNYI-----EEAMSREAIDD--LYAPLIMGCDIAGEGGDK 331
             R E   +F     + F   + +     E   +R  ++D        +G D  G+  D 
Sbjct: 243 EFRQEYGAEFVSHSNSVFSGLDMLILLPYERRGTRLVVEDYRPDHIYCIGADF-GKNQDY 301

Query: 332 TVVVFRRGNI 341
           +V      + 
Sbjct: 302 SVFSVLDLDT 311


>gi|149408318|ref|YP_001294421.1| conserved hypothetical protein ORF004 [Pseudomonas phage F8]
 gi|219523873|ref|YP_002455934.1| terminase large subunit [Pseudomonas phage PB1]
 gi|190333469|gb|ACE73724.1| terminase large subunit [Pseudomonas phage PB1]
          Length = 460

 Score =  118 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 81/278 (29%), Gaps = 24/278 (8%)

Query: 77  IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136
            +K  I  GR   K+     + +  ++    +  +C    + ++  +++  +   +    
Sbjct: 17  RYKV-IYGGRASSKSHDAGGIAV-YLAANYRLKFLCARQFQNRISESVYTLIKDKIENSE 74

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
           +   F     S+      +E                   +     +            ++
Sbjct: 75  YNGEFIFTKNSIKHKRTGSE-----------------FLFYGIARNLSEIKSTEGIDILW 117

Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDT 255
            +EA        + I     + N   +  +  N   +  + Y  F   P +D     I+ 
Sbjct: 118 LEEAHYLTQEQWEVIEPTIRKENSEIW--IIFNPNEVTDFVYQNFVVKPPKDAFVKMINW 175

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DD 313
                +     + I   Y  D D A     G        + I   +I  A+        +
Sbjct: 176 NENPFLSETMLKVIHEAYERDKDQAEHIYGGIPKTGGDKSVINLKFILAAIDAHKKLGWE 235

Query: 314 LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
                 +G D+A +G D        GN+I  + +W   
Sbjct: 236 PAGSKRIGFDVADDGEDANATTLMHGNVIMEVDEWDGL 273


>gi|66391670|ref|YP_239195.1| gp17 terminase subunit, nuclease and ATPase [Enterobacteria phage
           RB43]
 gi|62288758|gb|AAX78741.1| gp17 terminase subunit, nuclease and ATPase [Enterobacteria phage
           RB43]
          Length = 609

 Score =  118 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/376 (12%), Positives = 103/376 (27%), Gaps = 65/376 (17%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + R     +  ++ L E +   +C      F   +                  +Q E + 
Sbjct: 91  LKRAYVQTKWTKEMLMEWV---KCRDDIVYFAETYCAITHIDYGTIKVQ-LRDYQKEML- 145

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +++H +  V  +            R +GKTT+ A  +   +       +  +A+  +  
Sbjct: 146 -IEMHKNRMVTCNLS----------RQLGKTTVVAIFLAHFVCFNEDKYVGVLAHKASMS 194

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
              L     + + +LP                   E  + S+ +D+K             
Sbjct: 195 AEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNKCKIGAF------- 235

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
             +           ++ DE +  P+      +I    +    ++  I+ + T      FY
Sbjct: 236 ASSPDAVRGNSFAMIYIDECAFIPNFTDAWLAIQPVISSGRKSK--ILITTTPNGLNHFY 293

Query: 239 DIFNIP---LEDWKRYQIDTR----------TVEGIDSGFHEGIISRYGLDSDVARIEIL 285
           DI+N        +  Y                    D G+        G   +    E  
Sbjct: 294 DIWNAAVEGKSGFVPYTAIWTSVKERLYTDGDNGVFDDGYSWSAKMIAGSSKEAFLQEHC 353

Query: 286 GQFPQQEVN----------NFIPHNYIEEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVV 334
            +F                ++I  +  E    +    +     +   D A G G D   +
Sbjct: 354 AEFMGTNGTLISGWKLSKMSWIDIDETETNFYQYKKPEEGHKYVAVLDPAEGRGQDYHAM 413

Query: 335 VFRRGNII--EHIFDW 348
                  +  E +  +
Sbjct: 414 HIIDITTLPFEQVAVY 429


>gi|186682890|ref|YP_001866086.1| hypothetical protein Npun_R2589 [Nostoc punctiforme PCC 73102]
 gi|186465342|gb|ACC81143.1| hypothetical protein Npun_R2589 [Nostoc punctiforme PCC 73102]
          Length = 543

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/391 (13%), Positives = 110/391 (28%), Gaps = 75/391 (19%)

Query: 22  AECVLSFKNFVMRFFPWGIKGKPL-EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKC 80
           A+   S   +       G +  P  ++   P  +    +     +  + +  S       
Sbjct: 4   AKLKTSSSKYAALVHG-GSRPIPFPQYADDPVGFFKNELGIELTNEQTIIAESVRDRPIT 62

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
            + A  G GK+ + + ++++ +    G   I  A SE Q+K  LWAE+ K   +   +  
Sbjct: 63  NVKAAHGTGKSFIASLLVIYFLFC-VGGVAITTAPSEDQVKWILWAELRKIHGLHKTKLG 121

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
                + L               + S+       T  +   ++F G H      +  DEA
Sbjct: 122 GRCDIMQL---------------LFSETVYAFGITSRDYSENSFQGQHRQKQ-LLIEDEA 165

Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
            G    I+   +   T  +         N       F     +              V  
Sbjct: 166 DGITPQIDNGFIACLTGSDNRGLR--IGNPVDPQSQFAKTCKLDKRCLTVSAFSHPNVSW 223

Query: 261 ---------------------------------------------IDSGFHEGIISRYGL 275
                                                        I   + E +      
Sbjct: 224 AYELCADGVYRLKPEVAEHIINEDGEIKPQQEWPPEFPRDRIPGAISIDWIERVRREKFE 283

Query: 276 DSDVARIEILGQFPQQEVNNFIPHNYIEEAM-------SREAIDDLYAPLIMGCDIAGEG 328
            S   +  ++G++ +   +  I    +++A                  P  +G D+ G+G
Sbjct: 284 TSAYWKGRVMGEYAEDAADGIILLTLLKQARSLYDQNPQYWDAIAKRYPWRLGLDV-GDG 342

Query: 329 GDKTVVVFRRGNIIEHIFDWSAK-LIQETNQ 358
           GD   +   RG ++  +     K  + +T +
Sbjct: 343 GDPHALALLRGPVLYEVQIHPTKGDLLDTER 373


>gi|61806451|ref|YP_214228.1| DNA maturase beta subunit [Prochlorococcus phage P-SSP7]
 gi|61374376|gb|AAX44230.1| DNA maturase beta subunit [Prochlorococcus phage P-SSP7]
 gi|265525485|gb|ACY76251.1| DNA maturase beta subunit [Prochlorococcus phage P-SSP7]
          Length = 577

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 53/375 (14%), Positives = 86/375 (22%), Gaps = 89/375 (23%)

Query: 27  SFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR 86
            FK F+     W     P      P R Q     A+  +  S          +  I A R
Sbjct: 11  DFKLFLQAL--WDQLDLP-----SPTRAQ----YAIADYLQSGPK-------RLQIQAFR 52

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G+GK+ +    +LW +       I+ I+ S+ +  N         +     +H       
Sbjct: 53  GVGKSWITGAFVLWTLFNDAEKKIMIISASKERADNMSIFLQKLIIETPWLKHLRPKSDD 112

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTY----------SEERPDTFVGPHNTHGMAVF 196
           +      +  L         K   IT +              E P   +       +   
Sbjct: 113 ARWSRISFDVLCSPHQAPSVKSVGITGQLTGSRADLMILDDIEVPGNSMTELMREKLLQL 172

Query: 197 NDEASGT--------------PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242
             EA                 P                   W      + +  +   I  
Sbjct: 173 CTEAESILTPKDDSRIMYLGTPQTTFTVYRKLAERAYRPFVWPARY-PKDITPYEGLIAP 231

Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF-------------- 288
              ED             +              +S + R   + QF              
Sbjct: 232 QLQEDIDN----GAESGTVTDPDRFDDDDLQQRESAMGRSNFMLQFMLDTTLSDAEKFPL 287

Query: 289 -----------PQQEVNNFI-----------------PHNYIEEAMSREAIDDLYAPLIM 320
                      P +  +N I                 P +Y    M  +     Y   I 
Sbjct: 288 KMADLVITSVNPTEAPDNVIWCSDPQNIIKDAPTVGLPGDYFYSPMQLQGEWTPYQETIC 347

Query: 321 GCDIAGEGGDKTVVV 335
             D +G G D+T   
Sbjct: 348 SVDPSGRGTDETAAC 362


>gi|294085818|ref|YP_003552578.1| hypothetical protein SAR116_2251 [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292665393|gb|ADE40494.1| protein of unknown function DUF264 [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 454

 Score =  116 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 77/281 (27%), Gaps = 22/281 (7%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAI-SAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113
           Q+  +                  ++  +  AGRG GKT   A  + WL  +     I  +
Sbjct: 52  QINLLLYEWQLWARPKQLPPAGDWRVWLLMAGRGFGKTRAGAEWIRWLAQSGRARRIALV 111

Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173
             +    +  +    S  LS+ P+      ++                          + 
Sbjct: 112 GETFDDARQVMVEGASGILSVCPNWARPAWRAGQRTL------------------IWPSG 153

Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233
                   D             + DE +      +                 + + T R 
Sbjct: 154 TIARCYSADDPEQLRGPEFDYGWADEIAKW-RYPSAWDNLMLALRIGKSPQCIATTTPRP 212

Query: 234 NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293
             W  D+     ED    Q  +R      S      + R   DS +AR E+ G       
Sbjct: 213 VRWLADL--AAAEDTVLVQGASRENAANLSPAFMAAMHRRFGDSYLARQELEGIMMSNLP 270

Query: 294 NNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334
           +     N I            +  +++G D A  GGD+T +
Sbjct: 271 DALWCRNDILRLHRPMPKRHRFIRIVIGVDPAMGGGDETGI 311


>gi|310722477|ref|YP_003969300.1| terminase DNA packaging enzyme large subunit [Aeromonas phage
           phiAS5]
 gi|306021320|gb|ADM79854.1| terminase DNA packaging enzyme large subunit [Aeromonas phage
           phiAS5]
          Length = 633

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/375 (12%), Positives = 106/375 (28%), Gaps = 66/375 (17%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSF-KNFVMRFF-PWGIKGKPLEHFSQPHRWQLEF 58
           + R     +  ++ + E     + ++ F +N+       WG+    L        +Q + 
Sbjct: 117 LKRANVPTKWTKEMVEEWKRCRDDIVYFAENYCSIVHIDWGVIKVQL------RDYQKDM 170

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           +  +         ++ P          R +GKTT  A  +   +      ++  +A+   
Sbjct: 171 LRIMST--ERMSMHNLP----------RQLGKTTATAIFLTHFVVFNEAKAVGVLAHKGD 218

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
             +  L     + + +LP                   E  + ++ +++            
Sbjct: 219 MSREVLER-TKQCIELLPD-----------FLQPGIVEWNKGNIELENGCSI-------G 259

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
               +           ++ DE +     +   K+IL   +    +R  I+ ++T      
Sbjct: 260 AYASSPDAVRGNSFALIYVDECAFIEGFEDTWKAILPVISSGRKSR--IILTSTPNGINH 317

Query: 237 FYDIFN---IPLEDWKRYQIDTRTVEGI--------DSGFHEGIISRYGLDSDVARIEIL 285
           +YD++       + +K Y     TV+          D GF            +  R E  
Sbjct: 318 WYDLWEVSLNSDKGFKPYTTTWITVKERLYNGADKYDDGFEWATKQINSSSIEAFRQEHC 377

Query: 286 GQFPQQEVNNFIPHNYI---------EEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVV 335
             F                       E+        +     I   D A G G D + + 
Sbjct: 378 CVFMGTAGTLINGFKLTKMIWDEVNNEDGFYCLEKPEPDHKYIATVDPAEGRGQDYSTMQ 437

Query: 336 FRRGNI--IEHIFDW 348
                +     +  +
Sbjct: 438 IIDVTVYPYRQVAVY 452


>gi|329849103|ref|ZP_08264131.1| phage terminase, large subunit, PBSX family [Asticcacaulis
           biprosthecum C19]
 gi|328844166|gb|EGF93735.1| phage terminase, large subunit, PBSX family [Asticcacaulis
           biprosthecum C19]
          Length = 430

 Score =  115 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 87/296 (29%), Gaps = 26/296 (8%)

Query: 53  RWQLE---FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           +W  E    +E +  +            F+ A   GRG  K+   A   ++     PG  
Sbjct: 16  KWGGEGKVILEPIPAYRFLTKKPLGSFRFRAAY-GGRGAAKSWEFANAAIYHSLNTPGAR 74

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           ++ +   +  L ++ +  V   L        F   +   H              +++   
Sbjct: 75  VVFVREIQGSLADSAFTLVRNRLEAYGLEGAFRQANGRFH-------------HVENGAE 121

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
            +    +   +P+               +EAS         ++        +  W +  N
Sbjct: 122 ILFLGLWRGNKPEGIKSLEGA--TLTIWEEASEGRQRSLDVLIPTVLRTPQSELWCLW-N 178

Query: 230 TRRLNGWFYDIFNIPLE--DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
                      F   +E       +++  +         E +      D   A     G 
Sbjct: 179 PMLPTDPVDRFFRGDVEPQKTICRRVNWDSNPHFPEALREQMALDRKKDPLRAAWIWDGA 238

Query: 288 FPQQEVNNFIPHNYIEEAM--SREAIDDLYAPLIMGCDIAGEGGDKTVVVF--RRG 339
           +     N       ++ A    R+ + +    +++G D AG GGD+  +V   R G
Sbjct: 239 YMPSAQNALWTRELLDRAWVQGRDKVMEAVGRVVVGVDPAGGGGDEVGIVVAGRYG 294


>gi|241760933|ref|ZP_04759022.1| phage terminase, large subunit, PBSX family [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|241374552|gb|EER64013.1| phage terminase, large subunit, PBSX family [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
          Length = 428

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 81/286 (28%), Gaps = 27/286 (9%)

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
           P  +K A   GRG GK+   A M++      PG+  +CI   +  LK++    +      
Sbjct: 20  PARYKGAY-GGRGSGKSHFFAEMLVEDCLRLPGLRAVCIREVQKSLKDSAKRLI------ 72

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
                  E +  + H        + +       +  I  +   +   ++           
Sbjct: 73  -------EAKLSAYHLGSNVGFRVFRDHIQTPGNGIIIFQGMQDHTAESIKSLEGFSR-- 123

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF--NIPLEDWKRYQ 252
            + +EA        + +      ++    W    N R        +     P       Q
Sbjct: 124 AWVEEAQTLSQRSLELLRPTIRTIDSE-LWFSW-NPRFKTDPVDRMLRGETPPTGAVVVQ 181

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
            +        S   +        D D  R    G + +     +      +    +    
Sbjct: 182 ANWENNPWFPSPLDQERRDCLANDPDKYRHIWEGGYAEITEGAYYAQALAKARSEKRIAV 241

Query: 313 DLYAPLI---MGCDIAGEG--GDKTVVVFRR--GNIIEHIFDWSAK 351
               PL+      DI G G   D T +   +  G  I  +  + A+
Sbjct: 242 VAADPLMTLRAVWDIGGTGAKADATAIWIVQYVGREIRFLDHYEAQ 287


>gi|260906962|ref|ZP_05915284.1| hypothetical protein BlinB_16637 [Brevibacterium linens BL2]
          Length = 249

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 79/263 (30%), Gaps = 42/263 (15%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P  WQ   +                   +  +   R +GKTT  A+  L      PG  +
Sbjct: 24  PELWQERLLRT--------------QEARVLVLCARQVGKTTATAYKALHAAMFNPGRDV 69

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + ++ S+ Q    L    S +  M                +   +      MG+ +    
Sbjct: 70  LIVSPSQRQSDEMLRRVASLYRGM--------------KEAPKLSRSNTSEMGLSNGSRV 115

Query: 171 ITCRTYSEERPDTFVGPHNTHGM-AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
           ++        P +  G     G+  +  DEAS   D +  S+L            +  S 
Sbjct: 116 VS-------LPGSEGGIRGFAGVKLLILDEASRVDDDVFASVLPMVASDGQ---MVALST 165

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
                GWF+++       W+R+++     +         + +  G  S V   + L +F 
Sbjct: 166 PWGRRGWFHELHQETRNGWERHKVTVYESDQYTPPRIAEVKASLG--SFVFSSDYLCEF- 222

Query: 290 QQEVNNFIPHNYIEEAMSREAID 312
               +       +  A S     
Sbjct: 223 GDTDSQLFSTENVRAAFSPGIQP 245


>gi|307251380|ref|ZP_07533296.1| hypothetical protein appser4_21360 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306856621|gb|EFM88761.1| hypothetical protein appser4_21360 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 384

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 64/211 (30%), Gaps = 9/211 (4%)

Query: 153 WYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212
            + E+ +  +   +             + +       T    V+ +E           ++
Sbjct: 13  PFFEVQKTQIIGRNGSRFTFA----GLKTNITSIKSMTGIDVVWVEEGENVSKESWDVLI 68

Query: 213 GFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271
               E       I++ N + L    Y  F   P E      ++ +          E +  
Sbjct: 69  PTIREDGSQI--IVSFNPKNLLDDTYQRFVINPPERCCSVLVNWQDNPYFPKELMEDMKQ 126

Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIMGCDIAGEGG 329
               D ++ R    GQ         I   +IE+A+              ++G D+A EG 
Sbjct: 127 MKERDFELYRHVYEGQPVADSDLAIIKPLWIEKAVDAHKKLGFTASGRKVVGFDVADEGI 186

Query: 330 DKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360
           D     F  G+++  + +W    + ++    
Sbjct: 187 DANANCFAHGSVVLQVDEWRGDDVIQSAHRT 217


>gi|260753099|ref|YP_003225992.1| phage terminase, large subunit, PBSX family [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|258552462|gb|ACV75408.1| phage terminase, large subunit, PBSX family [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 428

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 81/286 (28%), Gaps = 27/286 (9%)

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
           P  +K A   GRG GK+   A M++      PG+  +CI   +  LK++    +      
Sbjct: 20  PARYKGAY-GGRGSGKSHFFAEMLVEDCLRLPGLRAVCIREVQKSLKDSAKRLI------ 72

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
                  E +  + H        + +       +  I  +   +   ++           
Sbjct: 73  -------EAKLSAYHLGSNVGFRVFRDHIQTPGNGVIIFQGMQDHTAESIKSLEGFSR-- 123

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF--NIPLEDWKRYQ 252
            + +EA        + +      ++    W    N R        +     P       Q
Sbjct: 124 AWVEEAQTLSQRSLELLRPTIRTIDSE-LWFSW-NPRFKTDPVDRMLRGETPPTGAVVVQ 181

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
            +        S   +        D D  R    G + +     +      +    +    
Sbjct: 182 ANWENNPWFPSPLDQERRDCLANDPDKYRHIWEGGYAEITEGAYYAQALAKARSEKRIAV 241

Query: 313 DLYAPLI---MGCDIAGEG--GDKTVVVFRR--GNIIEHIFDWSAK 351
               PL+      DI G G   D T +   +  G  I  +  + A+
Sbjct: 242 VAADPLMTLRAVWDIGGTGAKADATAIWIVQYVGREIRFLDHYEAQ 287


>gi|56551275|ref|YP_162114.1| PBSX family phage terminase large subunit [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56542849|gb|AAV89003.1| phage terminase, large subunit, PBSX family [Zymomonas mobilis
           subsp. mobilis ZM4]
          Length = 428

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 81/286 (28%), Gaps = 27/286 (9%)

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
           P  +K A   GRG GK+   A M++      PG+  +CI   +  LK++    +      
Sbjct: 20  PARYKGAY-GGRGSGKSHFFAEMLVEDCLRLPGLRAVCIREVQKSLKDSAKRLI------ 72

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
                  E +  + H        + +       +  I  +   +   ++           
Sbjct: 73  -------EAKLSAYHLGRNVGFRVFRDHIQTPGNGVIIFQGMQDHTAESIKSLEGFSR-- 123

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF--NIPLEDWKRYQ 252
            + +EA        + +      ++    W    N R        +     P       Q
Sbjct: 124 AWVEEAQTLSQRSLELLRPTIRTIDSE-LWFSW-NPRFKTDPVDRMLRGETPPTGAVVVQ 181

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
            +        S   +        D D  R    G + +     +      +    +    
Sbjct: 182 ANWENNPWFPSPLDQERRDCLTNDPDKYRHIWEGGYAEITEGAYYAQALAKARSEKRIAV 241

Query: 313 DLYAPLI---MGCDIAGEG--GDKTVVVFRR--GNIIEHIFDWSAK 351
               PL+      DI G G   D T +   +  G  I  +  + A+
Sbjct: 242 VAADPLMTLRAVWDIGGTGAKADATAIWIVQYVGREIRFLDHYEAQ 287


>gi|328952976|ref|YP_004370310.1| hypothetical protein Desac_1270 [Desulfobacca acetoxidans DSM
           11109]
 gi|328453300|gb|AEB09129.1| hypothetical protein Desac_1270 [Desulfobacca acetoxidans DSM
           11109]
          Length = 466

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 50/297 (16%), Positives = 88/297 (29%), Gaps = 50/297 (16%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P  WQ +F+ +                    +   R  GK+T  A + L      PG  I
Sbjct: 27  PDPWQQDFLVSRPEQA--------------LLLCSRQSGKSTSAAALALHEALFHPGALI 72

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + ++ S  Q +  L+ + +     LPH       S                +  D     
Sbjct: 73  LLLSPSLRQSQE-LFRKAAGLYQRLPHAPAACRTSA-------------LRLEFDHGSRI 118

Query: 171 ITCRTYSEERPDTFVGPHNTHGM-AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
           I+        P           +  +  DEA+  PD +  ++                S 
Sbjct: 119 IS-------LPGQEETIRGFSEVRLLVIDEAALVPDELYYAVRPMLAVSRGRL--TALST 169

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
                GWFY  +    + W+RY I       I + F      +  L +   R E   +F 
Sbjct: 170 PAGKRGWFYHCYTEGGDQWQRYTIPATQCPRISADFL--AAEQRSLPAAWFRAEYFCEFG 227

Query: 290 QQEVNNFIPHNYIEEAMSREAID--------DLYAPLIMGCDIAGEGGDKTVVVFRR 338
           +   N   P + ++ A   +                  +G D+ G+  D + +    
Sbjct: 228 EAA-NQLFPAHLLQTAQCSQVSPLFAEITPSPPTGTFFIGLDL-GQSQDYSALTIIH 282


>gi|304373761|ref|YP_003858506.1| gp17 terminase subunit, nuclease and ATPase [Enterobacteria phage
           RB16]
 gi|299829717|gb|ADJ55510.1| gp17 terminase subunit, nuclease and ATPase [Enterobacteria phage
           RB16]
          Length = 609

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/376 (12%), Positives = 102/376 (27%), Gaps = 65/376 (17%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + R     +  +Q L E +   +C      F   +                  +Q E + 
Sbjct: 91  LKRAFVQTKWTQQMLIEWV---KCRDDIVYFAETYCAITHIDYGTIKVQ-LRDYQKEML- 145

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +++H +  V  +            R +GKTT+ A  +   +       +  +A+  +  
Sbjct: 146 -IEMHKNRMVACNLS----------RQLGKTTVVAIFLAHFVCFNEDKFVGVLAHKASMS 194

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
              L     + + +LP                   E  + S+ +D+K             
Sbjct: 195 AEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNKCKIGAF------- 235

Query: 181 PDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
             +           ++ DE +  P       +I    +    ++  I+ + T      FY
Sbjct: 236 ASSPDAVRGNAFAMIYIDECAFIPNFQDAWLAIQPVISSGRKSK--ILITTTPNGLNHFY 293

Query: 239 DIFNIP---LEDWKRYQIDTRTVEGIDSGFH----------EGIISRYGLDSDVARIEIL 285
           DI+N        +  Y     +V+                        G   +    E  
Sbjct: 294 DIWNAAVEGKSGFVPYTAIWTSVKERLYTDGDDGVFDDGYSWSAKMIAGSSKEAFLQEHC 353

Query: 286 GQFPQQEVN----------NFIPHNYIEEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVV 334
            +F                ++I  +  E    +          +   D A G G D   +
Sbjct: 354 AEFMGTNGTLISGWKLSKMSWIDIDETETNFYQYKKPIEGHKYVAVLDPAEGRGQDYHAM 413

Query: 335 VFRRGNII--EHIFDW 348
                + +  E +  +
Sbjct: 414 HIIDISAMPFEQVAVY 429


>gi|159904490|ref|YP_001548152.1| hypothetical protein MmarC6_0096 [Methanococcus maripaludis C6]
 gi|159885983|gb|ABX00920.1| protein of unknown function DUF264 [Methanococcus maripaludis C6]
          Length = 505

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/372 (13%), Positives = 94/372 (25%), Gaps = 62/372 (16%)

Query: 2   PRLISTDQKLEQELHE---MLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEF 58
           P            L+    ++ + E                          + H+ Q E 
Sbjct: 9   PNYAPQAPYGLGYLNTNPSIIHNPEIKDHLTYNFNHSLEKTACFVEFFMDRKLHQAQEEI 68

Query: 59  MEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
            EA+           +  ++    I+ GR  GKT +   +     S   G S++ +A   
Sbjct: 69  AEAI-----------DSEMYDVITINIGRRGGKTEVMGGVGPKFCSKYRGFSVLVVAPVY 117

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
            Q K           S    R   + +      S +                     T  
Sbjct: 118 NQAKTMYKKIKRGLESNKESRQLVKPKKEGFKESPFPL------------ITFYNGSTIE 165

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNPNRFWIMTSNTRRLNGW 236
            +  +T     +     +  DEA+   D I    +     +       +  S        
Sbjct: 166 FKSAETPDNLRSEGYDLIIVDEAAFVDDEIISAVLEPMLMDSGG--ILVKISTPWGTGNH 223

Query: 237 FYDIF----------------NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280
           FYD +                      +K ++  +     +   F  G     G D+ V 
Sbjct: 224 FYDSYIKGELQAKMLEEGEGIPEDELRYKSFKFPSWVNPYLSKRFLMGKKKDLGEDNPVW 283

Query: 281 RIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL--------------YAPLIMGCDIAG 326
             E   +F + +        +++  +S                         ++G D+A 
Sbjct: 284 LQEYCAEFIE-DDTTVFSTAHVQACLSDAFETHYKTENLIYLIDEGERNKEYVIGLDLAK 342

Query: 327 EGGDKTVVVFRR 338
              D TV +   
Sbjct: 343 H-NDYTVFIVLD 353


>gi|323699495|ref|ZP_08111407.1| protein of unknown function DUF264 [Desulfovibrio sp. ND132]
 gi|323459427|gb|EGB15292.1| protein of unknown function DUF264 [Desulfovibrio desulfuricans
           ND132]
          Length = 428

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 75/302 (24%), Gaps = 33/302 (10%)

Query: 67  HSNVNNSNPTIFKCAISAG-RGIGKTTLNAWMML--WLISTRPGMSIICIANSETQLKNT 123
             +       + + A+    R  GKT L+   ++     + R       IA    Q K  
Sbjct: 9   REHQARIEAELGRFAVLVCHRRFGKTVLSVNRLINAARETRRDDWRGAYIAPLYRQAKTV 68

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
           +W E+ ++          +     L                                 + 
Sbjct: 69  VWDELKRYCGFGLDGCTVKFNETELRAD------------------FDNGSRIRLFGANN 110

Query: 184 FVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242
                  +   V  DE +  P  +  + I    ++    + W M   T R     Y+I+ 
Sbjct: 111 PDSLRGMYLDGVVFDEVAQMPLRVWTEVIRPALSD---RKGWAMFIGTPRGKNALYEIWE 167

Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302
               D        R  E       E   S   +  +    E    F       +      
Sbjct: 168 KGKTDPDWLAAMYRASETGILPVEELEASAREMSPEEYEQEFECSFTAAIRGAYFGQLLA 227

Query: 303 EEAMS---REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
           +        +   D   P+    D+     D T + F +         ++     E   E
Sbjct: 228 DADREGRMTDVPADPSMPVHTAWDLGM--SDSTSIWFVQA---RPGGTFAVIDYYEACGE 282

Query: 360 GC 361
           G 
Sbjct: 283 GL 284


>gi|294661596|ref|YP_003580049.1| gp17 large terminase protein [Klebsiella phage KP15]
 gi|292660757|gb|ADE35005.1| gp17 large terminase protein [Klebsiella phage KP15]
          Length = 609

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/378 (12%), Positives = 105/378 (27%), Gaps = 69/378 (18%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + R     +  +Q L E +   +C      F   +                  +Q E + 
Sbjct: 91  LKRAYIQTKWTQQMLMEWV---KCRDDIVYFAETYCAITHIDYGTIKVQ-LRDYQREML- 145

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +++H +  V  +            R +GKTT+ A  +   +       +  +A+  +  
Sbjct: 146 -IEMHKNRMVACNLS----------RQLGKTTVVAIFLAHFVCFNEDKYVGVLAHKASMS 194

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
              L     + + +LP                   E  + S+ +D+K             
Sbjct: 195 AEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNKCKIGAF------- 235

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
             +           ++ DE +  P+      +I    +    ++  I+ + T      FY
Sbjct: 236 ASSPDAVRGNSFAMIYIDECAFIPNFIDAWLAIQPVISSGRKSK--ILITTTPNGLNHFY 293

Query: 239 DIFNIP---LEDWKRYQIDTRTVEGI------------DSGFHEGIISRYGLDSDVARIE 283
           DI+N        +  Y     +V+                 +   +I+    +      E
Sbjct: 294 DIWNAAIEGKSGFVPYTAIWTSVKERLYTDGDDGVFDDGYSWSSKMIASSSKE--AFLQE 351

Query: 284 ILGQFPQQEVN----------NFIPHNYIEEAMSREAIDDLYAPLIMGCDIA-GEGGDKT 332
              +F                +++  +  E    +          I   D A G G D  
Sbjct: 352 HCAEFMGTNGTLIAGWKLSKLSWVDTDETETNFYQYKAPVEGHKYIAVLDPAEGRGQDYH 411

Query: 333 VVVFRRGNII--EHIFDW 348
            +       +  E +  +
Sbjct: 412 AMHIIDITSMPFEQVAVY 429


>gi|116326387|ref|YP_803107.1| terminase subunit nuclease and ATPase [Enterobacteria phage RB32]
 gi|115343980|gb|ABI94989.1| terminase subunit nuclease and ATPase [Enterobacteria phage RB32]
          Length = 610

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/363 (12%), Positives = 94/363 (25%), Gaps = 63/363 (17%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + R     Q   + + E     +C      F   +         +        +Q + ++
Sbjct: 93  LKRANIKTQWTREMVEEWK---KCRDDIVYFAETYCAITHIDYGVIKVQ-LRDYQRDMLK 148

Query: 61  AVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
            +                +  +    R +GKTT+ A  +   +      ++  +A+  + 
Sbjct: 149 IMS-------------SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSM 195

Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
               L     + + +LP                   E  + S+ +D+             
Sbjct: 196 SAEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSI-------GA 236

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
              +           ++ DE +  P+      +I    +    ++  I+ + T      F
Sbjct: 237 YASSPDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSK--IIITTTPNGLNHF 294

Query: 238 YDIFNIPLED----------WKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
           YDI+   +E           W   +       +  D G+   I +  G      R E   
Sbjct: 295 YDIWTAAVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSTLAQFRQEHTA 354

Query: 287 QFPQQEVNNFIPHNYI----------EEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVV 335
            F                        +    R    +     I   D + G G D   + 
Sbjct: 355 AFEGTSGTLISGMKLAIMDFIEVTPDDHGFHRFKKPEPDRKYIATLDCSEGRGQDYHALH 414

Query: 336 FRR 338
              
Sbjct: 415 IID 417


>gi|300907068|ref|ZP_07124735.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
           84-1]
 gi|301304068|ref|ZP_07210185.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
           124-1]
 gi|300401186|gb|EFJ84724.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
           84-1]
 gi|300840675|gb|EFK68435.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
           124-1]
 gi|315257729|gb|EFU37697.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
           85-1]
          Length = 440

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 91/271 (33%), Gaps = 23/271 (8%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GR   K+   A + +  +S +  +   C    + +++ +++  +   +     RH F +
Sbjct: 4   GGRSSSKSWDAAGIAI-FLSNKYSLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRI 62

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
            +  +                 +    +    +     +            ++ +EA   
Sbjct: 63  LNNKIINRV-------------TGSEFVFYGLWR----NIEEIKSLEGISVLWLEEAHAL 105

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262
            +   K +     +     ++I   N   +  + +  F   P ED    +I+      + 
Sbjct: 106 TEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEDTLIRKINYDENPFLS 163

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIM 320
               + I +    D D  +    G     +    I  ++IE A+    +   +      +
Sbjct: 164 DTMLKVIEAAKRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAAVDAHKVLNFEPSGRKRI 223

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
           G D+A  G DK   V+R G+++    +W AK
Sbjct: 224 GFDVADSGADKCANVYRHGSVVYWADEWKAK 254


>gi|38640149|ref|NP_944105.1| gp17 terminase DNA packaging enzyme large subunit [Aeromonas phage
           Aeh1]
 gi|33414835|gb|AAQ17878.1| gp17 terminase DNA packaging enzyme large subunit [Aeromonas phage
           Aeh1]
          Length = 633

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/366 (12%), Positives = 100/366 (27%), Gaps = 70/366 (19%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFV-----MRFFPWGIKGKPLEHFSQPHRWQ 55
           + R     +   + + E      C      F      +    WG+    L        +Q
Sbjct: 117 LKRANVPTKWTREMVEEWK---RCRDDIVYFAETYCSIIHIDWGVIKVQL------RDYQ 167

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
            + +  +         ++ P          R +GKTT  A  +   +      ++  +A+
Sbjct: 168 KDMLRIMA--SERMSMHNLP----------RQLGKTTATAIFLTHFVVFNEAKAVGVLAH 215

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
                K  L     + + +LP                   E  + ++ +++         
Sbjct: 216 KGDMSKEVLER-TKQSIELLPD-----------FLQPGIVEWNKGNIELENGCSI----- 258

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRL 233
                  +           ++ DE +     +   K+IL   +    +R  I+ ++T   
Sbjct: 259 --GAYASSPDAVRGNSFALIYVDECAFIEGFEDTWKAILPVISSGRQSR--IILTSTPNG 314

Query: 234 NGWFYDIFN---IPLEDWKRYQIDTRTVEGI--------DSGFHEGIISRYGLDSDVARI 282
              +YD++       + +K Y     TV+          D GF            +  + 
Sbjct: 315 INHWYDLWEVSLKSDKGFKPYTTTWITVKERLYDGSDAYDDGFEWASKQINSSSVEAFQQ 374

Query: 283 EILGQFPQQEVNNFIPHNY---------IEEAMSREAIDDLYAPLIMGCDIA-GEGGDKT 332
           E L +F                       ++   +          I   D A G G D +
Sbjct: 375 EHLCRFMGTSGTLINGFKLSKMTWKEVIADDNFYQIEKPVEGNKYIATVDPAEGRGQDYS 434

Query: 333 VVVFRR 338
            +    
Sbjct: 435 TIQIID 440


>gi|282599341|ref|YP_003358653.1| Gp17 terminase DNA packaging enzyme large subunit [Shigella phage
           phiSboM-AG3]
 gi|226973647|gb|ACO94400.1| Gp17 terminase DNA packaging enzyme large subunit [Shigella phage
           phiSboM-AG3]
          Length = 736

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 52/292 (17%), Positives = 87/292 (29%), Gaps = 47/292 (16%)

Query: 91  TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
           TT+ A  +LW         I  +AN E Q    L             R     Q L    
Sbjct: 269 TTVVAAFLLWYAMFHSDKEIAVLANKEKQAIEIL------------DRIRKAYQDLPFFL 316

Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IIN 208
                +     +  ++        T S                 ++ DE +   +     
Sbjct: 317 QQGCEKFGSTLIEFENGSKIYAYATSS-------DSIRGRSVSLLYVDEVAFIENDFEFW 369

Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF------NIPLEDWKRYQIDTRTVEGID 262
           +S        + +R  I+TS  +   G FYDI       +    D+K  ++    V    
Sbjct: 370 ESTFPAIASADTSR-CILTSTPKGQRGLFYDIVTKANPEHPQYNDFKLTEVPWYRVPTYT 428

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--------DL 314
              +     R  L       E   +F +  V + IP   +++  S+   +          
Sbjct: 429 KDPNWESKQRAKLGDARFDQEFGIKF-RGSVGSLIPAKCLDKMTSKLYQEPNEFTKIYHD 487

Query: 315 YAPLIMGCDIAGEG----GDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGCP 362
           Y P  +   IA  G    GD +V+       I  I D+  K+  +      P
Sbjct: 488 YDPKRIYMGIADTGKGVEGDYSVL------TILDITDYPHKIAAKYRNNTIP 533


>gi|311993449|ref|YP_004010314.1| gp17 terminase DNA packaging enzyme large subunit [Acinetobacter
           phage Acj9]
 gi|295917406|gb|ADG60077.1| gp17 terminase DNA packaging enzyme large subunit [Acinetobacter
           phage Acj9]
          Length = 609

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 51/364 (14%), Positives = 102/364 (28%), Gaps = 64/364 (17%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + R     Q  +  + E +    C      F   +                  +Q + ++
Sbjct: 94  LKRANIKIQWNQDMISEWI---RCRDDIVYFAETYCAITHIDYGTIKVQ-LRDYQKDMLK 149

Query: 61  AVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
            +  +             + ++S   R +GKTT+ A  + W        +I  +A+  + 
Sbjct: 150 IMAEN-------------RMSVSKLSRQLGKTTVVAIFLAWFACFNKDKNIGILAHKGSM 196

Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
               L     + + +LP                   E  + S+ +D+             
Sbjct: 197 SAEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSAISA------- 237

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
              +           ++ DE +  P  +    +I    +        I+ + T      F
Sbjct: 238 YAASPDAVRGNSFSLIYIDECAFIPNFNDAWLAIQPVISSG--RHSKIIITTTPNGMNHF 295

Query: 238 YDIFNIPLE----------DWKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
           YDI+   +E          +W   +       +  D G+H    +  G   +  R E +G
Sbjct: 296 YDIWTAAVEGISGFVPYESEWNAVKERLYDDKDVFDDGWHFSFTTIGGSSVEQFRQEHVG 355

Query: 287 QFPQQEVNNFI-----------PHNYIEEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVV 334
            F   +    +           P N  +    +    D     I   D A G G D   +
Sbjct: 356 VFAGGQGTLSLRHETCNLKLETPINVGDSTFYKYKEPDPTRKYIATLDSAEGRGQDYHCM 415

Query: 335 VFRR 338
               
Sbjct: 416 NIID 419


>gi|228861099|ref|YP_002854122.1| gp17 terminase subunit [Enterobacteria phage RB51]
 gi|227438773|gb|ACP31085.1| gp17 terminase subunit [Enterobacteria phage RB51]
          Length = 610

 Score =  110 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 44/363 (12%), Positives = 94/363 (25%), Gaps = 63/363 (17%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + R     Q   + + E     +C      F   +         +        +Q + ++
Sbjct: 93  LKRANIKTQWTREMVEEWK---KCRDDIVYFAETYCAITHIDYGVIKVQ-LRDYQRDMLK 148

Query: 61  AVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
            +                +  +    R +GKTT+ A  +   +      ++  +A+  + 
Sbjct: 149 IMS-------------SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSM 195

Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
               L     + + +LP                   E  + S+ +D+             
Sbjct: 196 SAEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSI-------GA 236

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
              +           ++ DE +  P+      +I    +    ++  I+ + T      F
Sbjct: 237 YASSPDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSK--IIITTTPNGLNHF 294

Query: 238 YDIFNIPLED----------WKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
           YDI+   +E           W   +       +  D G+   I +  G      R E   
Sbjct: 295 YDIWTAAVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSTLAQFRQEHTA 354

Query: 287 QFPQQEVNNFIPHNYI----------EEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVV 335
            F                        +    R    +     I   D + G G D   + 
Sbjct: 355 AFEGTSGTLISGMKLAVMDFIEVTPDDHGFHRFKSPEPDRKYIATLDCSEGRGQDYHALH 414

Query: 336 FRR 338
              
Sbjct: 415 IID 417


>gi|330858684|ref|YP_004415059.1| putative terminase subunit nuclease and ATPase [Shigella phage
           Shfl2]
 gi|291290383|dbj|BAI83178.1| terminase subunit nuclease and ATPase [Enterobacteria phage AR1]
 gi|327397618|gb|AEA73120.1| putative terminase subunit nuclease and ATPase [Shigella phage
           Shfl2]
          Length = 610

 Score =  110 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 44/363 (12%), Positives = 94/363 (25%), Gaps = 63/363 (17%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + R     Q   + + E     +C      F   +         +        +Q + ++
Sbjct: 93  LKRANIKTQWTREMVEEWK---KCRDDIVYFAETYCAITHIDYGVIKVQ-LRDYQRDMLK 148

Query: 61  AVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
            +                +  +    R +GKTT+ A  +   +      ++  +A+  + 
Sbjct: 149 IMS-------------SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSM 195

Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
               L     + + +LP                   E  + S+ +D+             
Sbjct: 196 SAEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSI-------GA 236

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
              +           ++ DE +  P+      +I    +    ++  I+ + T      F
Sbjct: 237 YASSPDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSK--IIITTTPNGLNHF 294

Query: 238 YDIFNIPLED----------WKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
           YDI+   +E           W   +       +  D G+   I +  G      R E   
Sbjct: 295 YDIWTAAVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSTLAQFRQEHTA 354

Query: 287 QFPQQEVNNFIPHNYI----------EEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVV 335
            F                        +    R    +     I   D + G G D   + 
Sbjct: 355 AFEGTSGTLISGMKLAVMDFIEVTPDDHGFHRFKSPEPDRKYIATLDCSEGRGQDYHALH 414

Query: 336 FRR 338
              
Sbjct: 415 IID 417


>gi|228861479|ref|YP_002854500.1| gp17 terminase subunit [Enterobacteria phage RB14]
 gi|227438495|gb|ACP30808.1| gp17 terminase subunit [Enterobacteria phage RB14]
          Length = 610

 Score =  110 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 44/363 (12%), Positives = 94/363 (25%), Gaps = 63/363 (17%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + R     Q   + + E     +C      F   +         +        +Q + ++
Sbjct: 93  LKRANIKTQWTREMVEEWK---KCRDDIVYFAETYCAITHIDYGVIKVQ-LRDYQRDMLK 148

Query: 61  AVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
            +                +  +    R +GKTT+ A  +   +      ++  +A+  + 
Sbjct: 149 IMS-------------SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSM 195

Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
               L     + + +LP                   E  + S+ +D+             
Sbjct: 196 SAEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSI-------GA 236

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
              +           ++ DE +  P+      +I    +    ++  I+ + T      F
Sbjct: 237 YASSPDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSK--IIITTTPNGLNHF 294

Query: 238 YDIFNIPLED----------WKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
           YDI+   +E           W   +       +  D G+   I +  G      R E   
Sbjct: 295 YDIWTAAVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSSLAQFRQEHTA 354

Query: 287 QFPQQEVNNFIPHNYI----------EEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVV 335
            F                        +    R    +     I   D + G G D   + 
Sbjct: 355 AFEGTSGTLISGMKLAIMDFIEVTPDDHGFHRFKSPEPDRKYIATLDCSEGRGQDYHALH 414

Query: 336 FRR 338
              
Sbjct: 415 IID 417


>gi|262276634|ref|ZP_06054439.1| P-loop protein [alpha proteobacterium HIMB114]
 gi|262225214|gb|EEY75661.1| P-loop protein [alpha proteobacterium HIMB114]
          Length = 409

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 79/271 (29%), Gaps = 34/271 (12%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
             F+  I+ GR  GKT L    +L          I  ++ +    K  +W ++ K +  L
Sbjct: 15  KRFRVLIT-GRRFGKTHLCLVEILRQARHCDNGKIFYVSPTYRMSKEIMWKQIKKLVKEL 73

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
               +     L++          + S+    K                           +
Sbjct: 74  RWDKYINETELTIVL----VNNCQISLKGADKSA---------------DNLRGVGLNFL 114

Query: 196 FNDEASGTPDIIN-KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL---EDWKRY 251
             DE +  P+    + +    ++   N   +     +    W YD+F        +WK +
Sbjct: 115 VLDEFADIPEEAWTEVLRPTISDKYANGKVLFVGTPKGYGNWSYDMFQRGQAGDPEWKSW 174

Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311
           +  T     ++    E        D+   R E    F       +   N+      +   
Sbjct: 175 KYTTIEGGQVEPHEIEQAKKDL--DARSFRQEYEASFETYAGVVYY--NFDRAKNVKPVP 230

Query: 312 DDLYAPLIMGCDIAGEGGD---KTVVVFRRG 339
            D  A + +G D      D     +   ++G
Sbjct: 231 YDQNAVIHIGMD---FNIDPMSACLFYVKQG 258


>gi|194434997|ref|ZP_03067239.1| phage terminase, large subunit, pbsx family [Shigella dysenteriae
           1012]
 gi|194416779|gb|EDX32906.1| phage terminase, large subunit, pbsx family [Shigella dysenteriae
           1012]
 gi|323166781|gb|EFZ52535.1| phage terminase, large subunit, PBSX family [Shigella sonnei 53G]
          Length = 447

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/271 (14%), Positives = 89/271 (32%), Gaps = 23/271 (8%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GR   K+   A + +  +S +  +   C    + +++ +++  +   +     RH F +
Sbjct: 10  GGRSSSKSWDAAGIAI-FLSNKYTLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRI 68

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
            +  +                 +    +    +     +            ++ +EA   
Sbjct: 69  LNNKIINRV-------------TGSEFVFYGLWR----NIEEIKSLEGIDVLWLEEAHAL 111

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262
            +   K +     +     ++I   N   +  + +  F   P E     +I+      + 
Sbjct: 112 TEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEGTLIRKINYDENPFLS 169

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIM 320
               + I +    D D  +    G     +    I  ++IE A+        +      +
Sbjct: 170 DTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAAVDAHKTLNFEPSGRKRI 229

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
           G D+A  G DK   V+R G+++    +W AK
Sbjct: 230 GFDVADSGTDKCANVYRHGSVVFWADEWKAK 260


>gi|326804661|ref|YP_004327532.1| Gp17 terminase subunit for DNA packaging, nuclease and ATPase
           [Salmonella phage Vi01]
 gi|301795311|emb|CBW38029.1| Gp17 terminase subunit for DNA packaging, nuclease and ATPase
           [Salmonella phage Vi01]
          Length = 736

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 84/292 (28%), Gaps = 47/292 (16%)

Query: 91  TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
           TT+ A  +LW         I  +AN E Q    L             R     Q L    
Sbjct: 269 TTVVAAFLLWYAMFHSDKEIAVLANKEKQAIEIL------------DRIRKAYQDLPFFL 316

Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IIN 208
                +     +  ++        T S                 ++ DE +   +     
Sbjct: 317 QQGCEKFGSTLIEFENGSKIYAYATSS-------DSIRGRSVSLLYVDEVAFIENDFEFW 369

Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF------NIPLEDWKRYQIDTRTVEGID 262
           +S        + +R  I+TS  +   G FYDI       +    D+   ++    V    
Sbjct: 370 ESTFPAIASADTSR-CILTSTPKGQRGLFYDIVTKADPRHPQYNDFHLTEVPWYKVPAYT 428

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD--------L 314
                    R  L       E   +F +  V + IP   +++  S+   +          
Sbjct: 429 KDPDWETKQRARLGDARFDQEFGIKF-RGSVGSLIPAKCLDKMTSKLYREPNEFTKIYKE 487

Query: 315 YAPLIMGCDIAGEG----GDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGCP 362
           Y P  +   IA  G    GD +V+       I  I ++   +  +      P
Sbjct: 488 YDPQRIYFGIADTGKGVEGDYSVL------TILDITEYPHVIAAKYRNNTIP 533


>gi|324012808|gb|EGB82027.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
           60-1]
          Length = 441

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/271 (14%), Positives = 89/271 (32%), Gaps = 23/271 (8%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GR   K+   A + +  +S +  +   C    + +++ +++  +   +     RH F +
Sbjct: 4   GGRSSSKSWDAAGIAI-FLSNKYTLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRI 62

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
            +  +                 +    +    +     +            ++ +EA   
Sbjct: 63  LNNKIINRV-------------TGSEFVFYGLWR----NIEEIKSLEGIDVLWLEEAHAL 105

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262
            +   K +     +     ++I   N   +  + +  F   P E     +I+      + 
Sbjct: 106 TEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEGTLIRKINYDENPFLS 163

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIM 320
               + I +    D D  +    G     +    I  ++IE A+        +      +
Sbjct: 164 DTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAAVDAHKTLNFEPSGRKRI 223

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
           G D+A  G DK   V+R G+++    +W AK
Sbjct: 224 GFDVADSGTDKCANVYRHGSVVFWADEWKAK 254


>gi|16760783|ref|NP_456400.1| bacteriophage protein [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|25512494|pir||AE0735 probable bacteriophage protein STY2040 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503080|emb|CAD05583.1| putative bacteriophage protein [Salmonella enterica subsp. enterica
           serovar Typhi]
          Length = 467

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 38/271 (14%), Positives = 89/271 (32%), Gaps = 23/271 (8%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GR   K+   A + +  +S +  +   C    + +++ +++  +   +     RH F +
Sbjct: 30  GGRSSSKSWDAAGIAI-FLSNKYTLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRI 88

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
            +  +                 +    +    +     +            ++ +EA   
Sbjct: 89  LNNKIINRV-------------TGSEFVFYGLWR----NIEEIKSLEGIDVLWLEEAHAL 131

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262
            +   K +     +     ++I   N   +  + +  F   P E     +I+      + 
Sbjct: 132 TEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEGTLIRKINYDENPFLS 189

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIM 320
               + I +    D D  +    G     +    I  ++IE A+        +      +
Sbjct: 190 DTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAAVDAHKTLNFEPSGRKRI 249

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
           G D+A  G DK   V+R G+++    +W AK
Sbjct: 250 GFDVADSGTDKCANVYRHGSVVFWADEWKAK 280


>gi|74311301|ref|YP_309720.1| putative bacteriophage protein [Shigella sonnei Ss046]
 gi|73854778|gb|AAZ87485.1| putative bacteriophage protein [Shigella sonnei Ss046]
          Length = 473

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 38/271 (14%), Positives = 89/271 (32%), Gaps = 23/271 (8%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GR   K+   A + +  +S +  +   C    + +++ +++  +   +     RH F +
Sbjct: 36  GGRSSSKSWDAAGIAI-FLSNKYTLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRI 94

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
            +  +                 +    +    +     +            ++ +EA   
Sbjct: 95  LNNKIINRV-------------TGSEFVFYGLWR----NIEEIKSLEGIDVLWLEEAHAL 137

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262
            +   K +     +     ++I   N   +  + +  F   P E     +I+      + 
Sbjct: 138 TEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEGTLIRKINYDENPFLS 195

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIM 320
               + I +    D D  +    G     +    I  ++IE A+        +      +
Sbjct: 196 DTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAAVDAHKTLNFEPSGRKRI 255

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
           G D+A  G DK   V+R G+++    +W AK
Sbjct: 256 GFDVADSGTDKCANVYRHGSVVFWADEWKAK 286


>gi|188492395|ref|ZP_02999665.1| phage terminase large subunit [Escherichia coli 53638]
 gi|188487594|gb|EDU62697.1| phage terminase large subunit [Escherichia coli 53638]
          Length = 467

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 38/271 (14%), Positives = 89/271 (32%), Gaps = 23/271 (8%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GR   K+   A + +  +S +  +   C    + +++ +++  +   +     RH F +
Sbjct: 30  GGRSSSKSWDAAGIAI-FLSNKYTLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRI 88

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
            +  +                 +    +    +     +            ++ +EA   
Sbjct: 89  LNNKIINRV-------------TGSEFVFYGLWR----NIEEIKSLEGIDVLWLEEAHAL 131

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262
            +   K +     +     ++I   N   +  + +  F   P E     +I+      + 
Sbjct: 132 TEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEGTLIRKINYDENPFLS 189

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIM 320
               + I +    D D  +    G     +    I  ++IE A+        +      +
Sbjct: 190 DTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAAVDAHKTLNFEPSGRKRI 249

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
           G D+A  G DK   V+R G+++    +W AK
Sbjct: 250 GFDVADSGTDKCANVYRHGSVVFWADEWKAK 280


>gi|9632853|ref|NP_049777.1| gp17'A unknown function [Enterobacteria phage T4]
 gi|5354477|gb|AAD42684.1|AF158101_271 gp17'A unknown function [Enterobacteria phage T4]
 gi|299780522|gb|ADJ39884.1| gp17'A [Enterobacteria phage T4T]
          Length = 523

 Score =  109 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 43/363 (11%), Positives = 94/363 (25%), Gaps = 63/363 (17%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + R     Q   + + E     +C      F   +         +        +Q + ++
Sbjct: 6   LKRANIKTQWTREMVEEWK---KCRDDIVYFAETYCAITHIDYGVIKVQ-LRDYQRDMLK 61

Query: 61  AVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
            +                +  +    R +GKTT+ A  +   +      ++  +A+  + 
Sbjct: 62  IMS-------------SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSM 108

Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
               L     + + +LP                   E  + S+ +D+             
Sbjct: 109 SAEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSI-------GA 149

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
              +           ++ DE +  P+      +I    +    ++  I+ + T      F
Sbjct: 150 YASSPDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSK--IIITTTPNGLNHF 207

Query: 238 YDIFNIPLED----------WKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
           YDI+   +E           W   +       +  D G+   I +  G      R E   
Sbjct: 208 YDIWTAAVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSSLAQFRQEHTA 267

Query: 287 QFPQQEVNNFIPHNYI----------EEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVV 335
            F                        +    +    +     I   D + G G D   + 
Sbjct: 268 AFEGTSGTLISGMKLAVMDFIEVTPDDHGFHQFKKPEPDRKYIATLDCSEGRGQDYHALH 327

Query: 336 FRR 338
              
Sbjct: 328 IID 330


>gi|103487487|ref|YP_617048.1| hypothetical protein Sala_2004 [Sphingopyxis alaskensis RB2256]
 gi|98977564|gb|ABF53715.1| protein of unknown function DUF264 [Sphingopyxis alaskensis RB2256]
          Length = 436

 Score =  109 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 74/263 (28%), Gaps = 25/263 (9%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           + AGRG GKT   A  +     T PG  I  +A S  + +  +    S  L++ P     
Sbjct: 54  LLAGRGFGKTRTGAEWVRAFAETTPGARIALVAASLLEARQVMVEGESGLLAIAPDHLRP 113

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
           E +S     +                         +                A + DE +
Sbjct: 114 EYESSLRRLT------------------WPNGAVATLYSAVEPDSLRGPEHDAAWCDEIA 155

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI 261
             P           T     R  ++ + T R                            +
Sbjct: 156 KWPKGEAAWDNLMLTMRIGARPQVVATTTPRCV-PLVRRLIQERGVATTRGRTASNRRNL 214

Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMG 321
              +   + + YG    + R E+ G+  +   +       IE           +A +++G
Sbjct: 215 SVQWLATMDAIYGGT-RLGRQELDGELLEDVEDALWTRALIERCRVDAGSIGKFARVVIG 273

Query: 322 CD-IAGEGGDKTVVVF----RRG 339
            D  A  GGD   +V     R G
Sbjct: 274 VDPPASAGGDACGIVVAALLRDG 296


>gi|218781804|ref|YP_002433122.1| hypothetical protein Dalk_3968 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218763188|gb|ACL05654.1| protein of unknown function DUF264 [Desulfatibacillum alkenivorans
           AK-01]
          Length = 443

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 78/302 (25%), Gaps = 36/302 (11%)

Query: 67  HSNVNNSNPTIFKCAISAG-RGIGKTTLNAWMMLWLISTRP--GMSIICIANSETQLKNT 123
             +    +    + ++    R  GKT      ++      P        IA    Q K+ 
Sbjct: 25  RRHQWEIHQNKKRFSVLVCHRRFGKTVAAVNELIMKACQNPLPAPRYAYIAPLYKQAKSV 84

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
           +W  + K+                       A         + +         +    D 
Sbjct: 85  VWDYLKKF---------------------AGAINGTTFHETELRCDLPNGARITLLGADN 123

Query: 184 FVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242
                  +      DE +  P+ +  + I    ++      W M   T R +  FYD++ 
Sbjct: 124 PDRLRGIYLDGAVLDEMAQMPERVWGEIIRPALSD---RLGWAMFIGTPRGHNAFYDLYQ 180

Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302
               D   +    R  E    G  E   ++  +  +    E    F    V  +      
Sbjct: 181 FARSDPDWFCAMYRASETGIVGRDELDAAKKEMTPEQYEQEFECSFSAAIVGAYYGPLIA 240

Query: 303 EE---AMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
           +            +   P+    D+     D T V F +   +    +       E   +
Sbjct: 241 QAEKEGRIVTLPVERALPVHTAWDLGM--SDSTAVWFFQ---VSPGGEIRVVDYLEDAGQ 295

Query: 360 GC 361
           G 
Sbjct: 296 GL 297


>gi|85716479|ref|ZP_01047450.1| prophage MuMc02, terminase, ATPase subunit, putative [Nitrobacter
           sp. Nb-311A]
 gi|85696668|gb|EAQ34555.1| prophage MuMc02, terminase, ATPase subunit, putative [Nitrobacter
           sp. Nb-311A]
          Length = 250

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 73/263 (27%), Gaps = 40/263 (15%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P  WQ E +                   +  +   R  GKTT+ A M L       G  +
Sbjct: 24  PDPWQAELLR--------------LNPKRALLLCSRQSGKTTVTALMALHRAIYETGALV 69

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + ++ S  Q    L  ++ K    L         +                + + +    
Sbjct: 70  VIVSPSNRQSGEML-RQIKKLHGSLKGAPELVGDA-------------VLKVELANGSRI 115

Query: 171 ITCRTYSEERPDTFVGPHN-THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
           I         P T            V  DEAS   D +  ++         +   I  + 
Sbjct: 116 IA-------LPGTEKTIRGIAGVSLVIIDEASRVDDELLAAVRPMLATR-ADGSLIALTT 167

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
                G+FY+ ++   + W R ++       I   F    +   G        E    F 
Sbjct: 168 PAGKRGFFYEAWHSDDQTWHRVRVAASDCPRISKEFLADELRSLG--PARYSEEYELAFV 225

Query: 290 QQEVNNFIPHNYIEEAMSREAID 312
               + F P   IE A + E   
Sbjct: 226 DDAASAF-PTAVIERAFTTEVEP 247


>gi|9632591|ref|NP_049776.1| gp17 terminase DNA packaging enzyme, large subunit [Enterobacteria
           phage T4]
 gi|137951|sp|P17312|TERL_BPT4 RecName: Full=Large terminase protein; AltName: Full=DNA-packaging
           protein Gp17; AltName: Full=Terminase large subunit
 gi|5354215|gb|AAD42422.1|AF158101_9 gp17 terminase DNA packaging enzyme, large subunit [Enterobacteria
           phage T4]
 gi|15201|emb|CAA36641.1| unnamed protein product [Enterobacteria phage T4]
 gi|299780521|gb|ADJ39883.1| large terminase protein [Enterobacteria phage T4T]
          Length = 610

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/363 (11%), Positives = 94/363 (25%), Gaps = 63/363 (17%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + R     Q   + + E     +C      F   +         +        +Q + ++
Sbjct: 93  LKRANIKTQWTREMVEEWK---KCRDDIVYFAETYCAITHIDYGVIKVQ-LRDYQRDMLK 148

Query: 61  AVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
            +                +  +    R +GKTT+ A  +   +      ++  +A+  + 
Sbjct: 149 IMS-------------SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSM 195

Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
               L     + + +LP                   E  + S+ +D+             
Sbjct: 196 SAEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSI-------GA 236

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
              +           ++ DE +  P+      +I    +    ++  I+ + T      F
Sbjct: 237 YASSPDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSK--IIITTTPNGLNHF 294

Query: 238 YDIFNIPLED----------WKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
           YDI+   +E           W   +       +  D G+   I +  G      R E   
Sbjct: 295 YDIWTAAVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSSLAQFRQEHTA 354

Query: 287 QFPQQEVNNFIPHNYI----------EEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVV 335
            F                        +    +    +     I   D + G G D   + 
Sbjct: 355 AFEGTSGTLISGMKLAVMDFIEVTPDDHGFHQFKKPEPDRKYIATLDCSEGRGQDYHALH 414

Query: 336 FRR 338
              
Sbjct: 415 IID 417


>gi|212703351|ref|ZP_03311479.1| hypothetical protein DESPIG_01394 [Desulfovibrio piger ATCC 29098]
 gi|212673197|gb|EEB33680.1| hypothetical protein DESPIG_01394 [Desulfovibrio piger ATCC 29098]
          Length = 509

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/307 (10%), Positives = 70/307 (22%), Gaps = 42/307 (13%)

Query: 67  HSNVNNSNPTIFKCAISAG-RGIGKTTLNAWMMLWLIST--RPGMSIICIANSETQLKNT 123
                  +    +  +    R  GKT      +L       R        A    Q K  
Sbjct: 19  RPLQWRFHQQRTRFCVLLCHRRFGKTVAAVNDLLRAALRTSRTDWRAAYAAPYLGQAKAV 78

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
            W  +  +  ++P                       +    + +              D 
Sbjct: 79  AWDYLRHFAGVIP---------------------GTRFHEGELRCDLPNGARIRLYGTDN 117

Query: 184 FVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242
                  +   +  DE +  P  +  + +     +      +      +  +   +D++ 
Sbjct: 118 AQALRGLYLDDLVLDEPADIPREVWSQILRPALADRRGRALFC--GTPKGCDNLLHDVWQ 175

Query: 243 -----IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297
                   E W R++        +     +   S  G+     + E    F       + 
Sbjct: 176 LAGSLGAAEGWSRFRFPASQTGYLPQAELDAARS--GMSEAEYQQEFECSFAAAVRGAYY 233

Query: 298 ---PHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354
                                 P+    D+     D T + F +   +E    W      
Sbjct: 234 AAQLDAADLAGRICPLPVSPDLPVHTAWDLGM--DDATAIWFFQ---VEPSGTWRMLDYY 288

Query: 355 ETNQEGC 361
           E + EG 
Sbjct: 289 EASGEGL 295


>gi|220702483|pdb|3EZK|A Chain A, Bacteriophage T4 Gp17 Motor Assembly Based On Crystal
           Structures And Cryo-Em Reconstructions
 gi|220702484|pdb|3EZK|B Chain B, Bacteriophage T4 Gp17 Motor Assembly Based On Crystal
           Structures And Cryo-Em Reconstructions
 gi|220702485|pdb|3EZK|C Chain C, Bacteriophage T4 Gp17 Motor Assembly Based On Crystal
           Structures And Cryo-Em Reconstructions
 gi|220702486|pdb|3EZK|D Chain D, Bacteriophage T4 Gp17 Motor Assembly Based On Crystal
           Structures And Cryo-Em Reconstructions
 gi|220702487|pdb|3EZK|E Chain E, Bacteriophage T4 Gp17 Motor Assembly Based On Crystal
           Structures And Cryo-Em Reconstructions
          Length = 577

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/363 (11%), Positives = 94/363 (25%), Gaps = 63/363 (17%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + R     Q   + + E     +C      F   +         +        +Q + ++
Sbjct: 93  LKRANIKTQWTREMVEEWK---KCRDDIVYFAETYCAITHIDYGVIKVQ-LRDYQRDMLK 148

Query: 61  AVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
            +                +  +    R +GKTT+ A  +   +      ++  +A+  + 
Sbjct: 149 IMS-------------SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSM 195

Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
               L     + + +LP                   E  + S+ +D+             
Sbjct: 196 SAEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSI-------GA 236

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
              +           ++ DE +  P+      +I    +    ++  I+ + T      F
Sbjct: 237 YASSPDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSK--IIITTTPNGLNHF 294

Query: 238 YDIFNIPLED----------WKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
           YDI+   +E           W   +       +  D G+   I +  G      R E   
Sbjct: 295 YDIWTAAVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSSLAQFRQEHTA 354

Query: 287 QFPQQEVNNFIPHNYI----------EEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVV 335
            F                        +    +    +     I   D + G G D   + 
Sbjct: 355 AFEGTSGTLISGMKLAVMDFIEVTPDDHGFHQFKKPEPDRKYIATLDCSEGRGQDYHALH 414

Query: 336 FRR 338
              
Sbjct: 415 IID 417


>gi|308814529|ref|YP_003934803.1| terminase DNA packaging enzyme large subunit [Shigella phage SP18]
 gi|308206121|gb|ADO19520.1| terminase DNA packaging enzyme large subunit [Shigella phage SP18]
          Length = 610

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/363 (12%), Positives = 99/363 (27%), Gaps = 63/363 (17%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + R     +  ++ + E     +C      F   +                  +Q + +E
Sbjct: 93  LKRANIKIKWTKEMVQEWK---KCRDDIVYFAETYCAITHIDYGTIKVQ-LRDYQRDMLE 148

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +  H       +            R +GKTT+ A  +   +      ++  +A+  +  
Sbjct: 149 IM--HKKRMTVCNLS----------RQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMS 196

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
              L     + + +LP                  +E  + ++ +D+              
Sbjct: 197 AEVL-DRTKQAIELLPD-----------FLQPGISEWNKGNITLDNGSTI-------GAY 237

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
             +           ++ DE +  P+      +I    +    ++  I+ + T      FY
Sbjct: 238 ASSPDAVRGNSFAMIYIDECAFIPNFVDAWLAIQPVISSGRRSK--IIITTTPNGLNHFY 295

Query: 239 DIFNIPLED----------WKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
           DI+   +E           W   +       +  D G+     +      +    E   Q
Sbjct: 296 DIWTAAIEKKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSKQTISASTLEQFNQEHGAQ 355

Query: 288 FPQQEVNNFIP------HNYIEEA-----MSREAIDDLYAPLIMGCDIA-GEGGDKTVVV 335
           F Q      I        ++IE         R    D     I   D + G G D   + 
Sbjct: 356 F-QGTSGTLISGMKLAIMDWIEVMPENGYFYRYKKPDPERKYIASLDCSEGRGQDYHALH 414

Query: 336 FRR 338
              
Sbjct: 415 IID 417


>gi|238695317|ref|YP_002922510.1| gp17 terminase DNA packaging enzyme, large subunit [Enterobacteria
           phage JS10]
 gi|220029453|gb|ACL78387.1| gp17 terminase DNA packaging enzyme, large subunit [Enterobacteria
           phage JS10]
          Length = 611

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/372 (12%), Positives = 95/372 (25%), Gaps = 65/372 (17%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + R     Q   + + E     +C      F   +                  +Q + ++
Sbjct: 93  LKRANIKTQWTREMVSEWK---KCRDDIVYFAETYCAITHIDYGTIKVQ-LRDYQRDMLK 148

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +  +  +  N S            R +GKTT+ A  +   +      ++  +A+  +  
Sbjct: 149 IMSKNRMTTCNLS------------RQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMS 196

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
              L     + + +LP                   E  + S+ +D+              
Sbjct: 197 AEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSI-------GAY 237

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
             +           ++ DE +  P+      +I    +    ++  I+ + T      FY
Sbjct: 238 ASSPDAVRGNSFAMIYIDECAFIPNFLDSWLAIQPVISSGRRSK--IIITTTPNGLNHFY 295

Query: 239 DIFNIPLED----------WKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
           DI+   +E           W   +       +  D G+     +         R E   +
Sbjct: 296 DIWTAAVEGKSGFAPYTAIWNSVKERLYNDADIFDDGWEWSSQTISASSLAQFRQEHCAE 355

Query: 288 FPQQEVNNFIPHNYI----------EEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVVF 336
           F                             R    D     I   D + G G D   +  
Sbjct: 356 FQGTSGTLISGMKLAIMDWKEVIPENGYFYRFHEPDPTHKYIASLDCSEGRGQDYHALHI 415

Query: 337 RRGNIIEHIFDW 348
                     +W
Sbjct: 416 IDVTT----DEW 423


>gi|161622599|ref|YP_001595293.1| gp17 terminase DNA packaging enzyme large subunit [Enterobacteria
           phage JS98]
 gi|52139922|gb|AAU29292.1| gp17 terminase DNA packaging enzyme large subunit [Enterobacteria
           phage JS98]
          Length = 611

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/372 (12%), Positives = 95/372 (25%), Gaps = 65/372 (17%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + R     Q   + + E     +C      F   +                  +Q + ++
Sbjct: 93  LKRANIKTQWTREMVSEWK---KCRDDIVYFAETYCAITHIDYGTIKVQ-LRDYQRDMLK 148

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +  +  +  N S            R +GKTT+ A  +   +      ++  +A+  +  
Sbjct: 149 IMSKNRMTTCNLS------------RQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMS 196

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
              L     + + +LP                   E  + S+ +D+              
Sbjct: 197 AEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSI-------GAY 237

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
             +           ++ DE +  P+      +I    +    ++  I+ + T      FY
Sbjct: 238 ASSPDAVRGNSFAMIYIDECAFIPNFLDSWLAIQPVISSGRRSK--IIITTTPNGLNHFY 295

Query: 239 DIFNIPLED----------WKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
           DI+   +E           W   +       +  D G+     +         R E   +
Sbjct: 296 DIWTAAVEGKSGFAPYTAIWNSVKERLYNDADIFDDGWEWSSQTISASSLAQFRQEHCAE 355

Query: 288 FPQQEVNNFIPHNYI----------EEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVVF 336
           F                             R    D     I   D + G G D   +  
Sbjct: 356 FQGTSGTLISGMKLAIMDWKEVIPENGYFYRFHEPDPTHKYIASLDCSEGRGQDYHALHI 415

Query: 337 RRGNIIEHIFDW 348
                     +W
Sbjct: 416 IDVTT----DEW 423


>gi|314121742|ref|YP_004063861.1| large terminase protein [Enterobacteria phage vB_EcoM-VR7]
 gi|313151499|gb|ADR32555.1| large terminase protein [Enterobacteria phage vB_EcoM-VR7]
          Length = 610

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 97/363 (26%), Gaps = 63/363 (17%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + R     +  ++ + E      C      F   +                  +Q + +E
Sbjct: 93  LKRANIKIKWTKEMVQEWK---RCRDDIVYFAETYCAITHIDYGTIKVQ-LRDYQRDMLE 148

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +  H       +            R +GKTT+ A  +   +      ++  +A+  +  
Sbjct: 149 IM--HKKRMTVCNLS----------RQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMS 196

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
              L     + + +LP                  +E  + ++ +D+              
Sbjct: 197 AEVL-DRTKQAIELLPD-----------FLQPGISEWNKGNITLDNGSTI-------GAY 237

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
             +           ++ DE +  P+      +I    +    ++  I+ + T      FY
Sbjct: 238 ASSPDAVRGNSFAMIYIDECAFIPNFVDAWLAIQPVISSGRRSK--IIITTTPNGLNHFY 295

Query: 239 DIFNIPLED----------WKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
           DI+   +E           W   +       +  D G+     +      +    E   Q
Sbjct: 296 DIWTAAIEKKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSKQTISASTLEQFNQEHGAQ 355

Query: 288 FPQQEVNNFIP------HNYIEEA-----MSREAIDDLYAPLIMGCDIA-GEGGDKTVVV 335
           F Q      I        ++I          R    D     I   D + G G D   + 
Sbjct: 356 F-QGTSGTLISGMKLAIMDWIRSMPENGYFYRYKKPDPERKYIASLDCSEGRGQDYHALH 414

Query: 336 FRR 338
              
Sbjct: 415 IID 417


>gi|16759908|ref|NP_455525.1| prophage terminase large subunit [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29142320|ref|NP_805662.1| prophage terminase large subunit [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213583175|ref|ZP_03365001.1| putative prophage terminase large subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213647535|ref|ZP_03377588.1| putative prophage terminase large subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213855100|ref|ZP_03383340.1| putative prophage terminase large subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|25512685|pir||AF0621 probable prophage terminase large chain STY1047 [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16502201|emb|CAD05440.1| putative prophage terminase large subunit [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29137950|gb|AAO69511.1| putative prophage terminase large subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
          Length = 467

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 89/271 (32%), Gaps = 23/271 (8%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GR   K+   A   +  ++ +  +   C    + +++ +++  +   +     RH F +
Sbjct: 30  GGRSSSKSWDAAGFAI-FLANKYSLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRI 88

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
            +  +                 +    +    +     +            ++ +EA   
Sbjct: 89  LNNKIINRV-------------TGSEFVFYGLWR----NIEEIKSLEGIDVLWLEEAHAL 131

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262
            +   K +     +     ++I   N   +  + +  F   P ED    +I+      + 
Sbjct: 132 TEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEDTLIRKINYDENPFLS 189

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD--LYAPLIM 320
               + I +    D +       G     +    I  ++IE A+    + D        +
Sbjct: 190 DTMLKVIDAARRRDPEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAHKVLDFGPEGRKRI 249

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
           G D+A  G DK   V+R G++I    +W AK
Sbjct: 250 GFDVADSGADKCANVYRYGSVIYWADEWKAK 280


>gi|326536310|ref|YP_004300751.1| gp17 terminase DNA packaging enzyme large subunit [Acinetobacter
           phage 133]
 gi|299483391|gb|ADJ19485.1| gp17 terminase DNA packaging enzyme large subunit [Acinetobacter
           phage 133]
          Length = 606

 Score =  106 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 40/363 (11%), Positives = 88/363 (24%), Gaps = 63/363 (17%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + R         + + E     +C      F   +                  +Q + ++
Sbjct: 89  LKRSNVRTPYTREMIEEWK---KCRDDILYFAETYCAITHIDHGTIKVK-LRDYQRDMLQ 144

Query: 61  AVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
            +D               +   +   R +GKT   A  +   +      S+  +A+  + 
Sbjct: 145 LMDSG-------------RLTCAKLSRQLGKTAAVAIFLAHYVCFNESKSVGILAHKGSM 191

Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
            +  L+    + + +LP                   E  ++S+ +D+             
Sbjct: 192 SEEVLFR-TKQAIELLPD-----------FLQPGIVEWNKRSIELDNGSSIGAF------ 233

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
              +           ++ DE +     D    +I    +        I+ + T      F
Sbjct: 234 -ASSPDAVRGNSFSLIYIDETAFVQNWDDCWLAIQPVISSG--RHSKIIMTTTPNGMNHF 290

Query: 238 YDIFNIPLEDWKRYQID-----------TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
           YD++   +     ++                 +  D G+     +      +    E LG
Sbjct: 291 YDLWQGAINGTSGFRPYEATWVSVKDRLYNEADTFDDGWEFSARAIGSSSIEQFLQEHLG 350

Query: 287 QFPQQEVNNFIPHNYI----------EEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVV 335
            F                        +               I   D A G G D   + 
Sbjct: 351 NFAGGSNTLIDGTKLAVLFGQERIADQHEFIEFKPPVAGRKYIATLDSAEGRGQDYHALH 410

Query: 336 FRR 338
              
Sbjct: 411 IID 413


>gi|9632854|ref|NP_049778.1| gp17'B unknown function [Enterobacteria phage T4]
 gi|5354478|gb|AAD42685.1|AF158101_272 gp17'B unknown function [Enterobacteria phage T4]
 gi|299780523|gb|ADJ39885.1| gp17'B [Enterobacteria phage T4T]
          Length = 505

 Score =  106 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 38/312 (12%), Positives = 83/312 (26%), Gaps = 59/312 (18%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSI 110
             +Q + ++ +                +  +    R +GKTT+ A  +   +      ++
Sbjct: 35  RDYQRDMLKIMS-------------SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAV 81

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
             +A+  +     L     + + +LP                   E  + S+ +D+    
Sbjct: 82  GILAHKGSMSAEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSI 129

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTS 228
                       +           ++ DE +  P+      +I    +    ++  I+ +
Sbjct: 130 -------GAYASSPDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSK--IIIT 180

Query: 229 NTRRLNGWFYDIFNIPLED----------WKRYQID-TRTVEGIDSGFHEGIISRYGLDS 277
            T      FYDI+   +E           W   +       +  D G+   I +  G   
Sbjct: 181 TTPNGLNHFYDIWTAAVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSSL 240

Query: 278 DVARIEILGQFPQQEVNNFIPHNYI----------EEAMSREAIDDLYAPLIMGCDIA-G 326
              R E    F                        +    +    +     I   D + G
Sbjct: 241 AQFRQEHTAAFEGTSGTLISGMKLAVMDFIEVTPDDHGFHQFKKPEPDRKYIATLDCSEG 300

Query: 327 EGGDKTVVVFRR 338
            G D   +    
Sbjct: 301 RGQDYHALHIID 312


>gi|16273317|ref|NP_439561.1| terminase large subunit-like protein [Haemophilus influenzae Rd
           KW20]
 gi|1175785|sp|P44184|Y1410_HAEIN RecName: Full=Uncharacterized protein HI_1410
 gi|1574247|gb|AAC23058.1| predicted coding region HI1410 [Haemophilus influenzae Rd KW20]
          Length = 394

 Score =  106 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 73/240 (30%), Gaps = 11/240 (4%)

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
           ++ E+ K +S    +   +   + +     + ++ +  +   +             + + 
Sbjct: 1   MFREIQKSISDSVIQMLAD--QIEMLSLQAFFDVQKTQIIGQNGSRFTFA----GLKTNI 54

Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN- 242
                 T    V+ +E           ++    E       I++ N + +    Y  F  
Sbjct: 55  TSIKSMTGIDVVWVEEGENVSKESWDILIPTIREDGSQI--IVSFNPKNILDDTYQRFVI 112

Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302
            P E  K   ++ +          E +      D ++ R    G+         I   +I
Sbjct: 113 HPPERCKSVLVNWQDNPYFPKELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWI 172

Query: 303 EEAMSREAID--DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360
           E A+               +G D+A EG D     F  G+++  I  W    + ++    
Sbjct: 173 EYAVDAHLKLGFTAKGMKKVGFDVADEGADSNANAFVHGSVVLDIEVWKNGDVIDSANRT 232


>gi|213618708|ref|ZP_03372534.1| putative prophage terminase large subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 282

 Score =  105 bits (262), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 89/271 (32%), Gaps = 23/271 (8%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GR   K+   A   +  ++ +  +   C    + +++ +++  +   +     RH F +
Sbjct: 30  GGRSSSKSWDAAGFAI-FLANKYSLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRI 88

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
            +  +                 +    +    +     +            ++ +EA   
Sbjct: 89  LNNKIINRV-------------TGSEFVFYGLWR----NIEEIKSLEGIDVLWLEEAHAL 131

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262
            +   K +     +     ++I   N   +  + +  F   P ED    +I+      + 
Sbjct: 132 TEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEDTLIRKINYDENPFLS 189

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD--LYAPLIM 320
               + I +    D +       G     +    I  ++IE A+    + D        +
Sbjct: 190 DTMLKVIDAARRRDPEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAHKVLDFGPEGRKRI 249

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
           G D+A  G DK   V+R G++I    +W AK
Sbjct: 250 GFDVADSGADKCANVYRYGSVIYWADEWKAK 280


>gi|299779112|ref|YP_003734306.1| gp17 terminase DNA packaging enzyme large subunit [Enterobacteria
           phage IME08]
 gi|298105841|gb|ADI55485.1| gp17 terminase DNA packaging enzyme large subunit [Enterobacteria
           phage IME08]
          Length = 611

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/372 (12%), Positives = 95/372 (25%), Gaps = 65/372 (17%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + R     Q   + + E     +C      F   +                  +Q + ++
Sbjct: 93  LKRANIKTQWSREMVSEWK---KCRDDIVYFAETYCAITHIDYGTIKVQ-LRDYQRDMLK 148

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +  +  +  N S            R +GKTT+ A  +   +      ++  +A+  +  
Sbjct: 149 IMSKNRMTTCNLS------------RQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMS 196

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
              L     + + +LP                   E  + S+ +D+              
Sbjct: 197 AEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSI-------GAY 237

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
             +           ++ DE +  P+      +I    +    ++  I+ + T      FY
Sbjct: 238 ASSPDAVRGNSFAMIYIDECAFIPNFLDSWLAIQPVISSGRRSK--IIITTTPNGLNHFY 295

Query: 239 DIFNIPLED----------WKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
           DI+   +E           W   +       +  D G+     +         R E   +
Sbjct: 296 DIWTAAVEGKSGFAPYTAIWNSVKERLYNDADIFDDGWEWSSQTISASSLAQFRQEHCAE 355

Query: 288 FPQQEVNNFIPHNYI----------EEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVVF 336
           F                             R    D     I   D + G G D   +  
Sbjct: 356 FQGTSGTLISGMKLAIMDWKEVIPENGYFYRFHEPDPTHKYIASLDCSEGRGQDYHALHI 415

Query: 337 RRGNIIEHIFDW 348
                     +W
Sbjct: 416 IDVTT----DEW 423


>gi|161614489|ref|YP_001588454.1| hypothetical protein SPAB_02238 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161363853|gb|ABX67621.1| hypothetical protein SPAB_02238 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 441

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/271 (14%), Positives = 88/271 (32%), Gaps = 23/271 (8%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GR   K+   A   +  ++ +  +   C    + +++ +++  +   +     RH F +
Sbjct: 4   GGRSSSKSWDAAGFAI-FLANKYSLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRI 62

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
            +  +                 +    +    +     +            ++ +EA   
Sbjct: 63  LNNKIINRV-------------TGSEFVFYGLWR----NIEEIKSLEGIDVLWLEEAHAL 105

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262
            +   K +     +     ++I   N   +  + +  F   P ED    +I+      + 
Sbjct: 106 TEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEDTLIRKINYDENPFLS 163

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD--LYAPLIM 320
               + I +      +       G     +    I  ++IE A+    + D        +
Sbjct: 164 DTMLKVIDAARRRYPEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAHKVLDFGPEGRKRI 223

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
           G D+A  G DK   V+R G++I    +W AK
Sbjct: 224 GFDVADSGADKCANVYRYGSVIYWADEWKAK 254


>gi|296117130|ref|ZP_06835723.1| phage terminase, large subunit [Gluconacetobacter hansenii ATCC
           23769]
 gi|295976225|gb|EFG83010.1| phage terminase, large subunit [Gluconacetobacter hansenii ATCC
           23769]
          Length = 404

 Score =  105 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 72/264 (27%), Gaps = 29/264 (10%)

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
           P  +K     GRG GK+   A +++ + + RP + I+C     + + +++   +S  ++ 
Sbjct: 18  PARYKILY-GGRGSGKSWTVARVIVAMAAARP-LRILCCREYHSSMADSVRRLLSDQVAA 75

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
           L    WF ++                           +   +     +            
Sbjct: 76  LGLGPWFRIR------------------ENLLTTACGSEILFRGLGRNVEAIKSTEKVDI 117

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY--Q 252
            + +EA          +L          +   T N  R +   + +     +D       
Sbjct: 118 CWVEEAQSLSRASLDILLPTIRAPGSEIW--FTYNPEREDAPMHQMMRALRDDPDAIVRH 175

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
           +  R                   D D       G+   +        +      +     
Sbjct: 176 VGWRDNPWFPPELDAERRRMLRHDPDSYDHVWEGECRTRSDAVVFGGHVEVAEFTT---- 231

Query: 313 DLYAPLIMGCDIAGEGGDKTVVVF 336
              A L  G D  G   D TV+V 
Sbjct: 232 PPDARLYFGVD-WGFARDPTVMVR 254


>gi|326536497|ref|YP_004300928.1| gp17 terminase DNA packaging enzyme large subunit [Aeromonas phage
           65]
 gi|312262843|gb|ADQ53099.1| gp17 terminase DNA packaging enzyme large subunit [Aeromonas phage
           65]
          Length = 642

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/370 (11%), Positives = 95/370 (25%), Gaps = 74/370 (20%)

Query: 10  KLEQELHEMLMHAECVLSFKNFVMRF----FPWGIKGKPLEHFSQPHRWQLEFMEAVDVH 65
             ++ + E     +C      F           G+ G  L        +Q + +  +   
Sbjct: 127 WSQEMVEEWK---KCRDDILYFAKYCAIIHLDHGVIGINL------RPYQKDMLRIMSE- 176

Query: 66  CHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124
                        + +I    R +GKTT  +      ++     ++  +A+  +  +  L
Sbjct: 177 ------------KRMSIHNLSRQLGKTTATSVYPCHYVTFNEAKNVGILAHKASMSREVL 224

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
                + + +LP                   E  + S+ +++                  
Sbjct: 225 ER-TKQIIELLPD-----------FLQPGIVEWNKGSIELENGCAISA-------YSSDP 265

Query: 185 VGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI-- 240
                     ++ DE       +   K+IL   +    N   ++TS    +N W+     
Sbjct: 266 DAVRGNSFALIYVDECGFVEAWEDCWKAILPVISS-GRNSKIVLTSTPNGMNHWYDLWQS 324

Query: 241 -------FNIPLEDWKRYQI--DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
                  F     +W   +        +  D G             +    E  GQF   
Sbjct: 325 AINGKSGFEPYEANWSAVKERLYHSETDSFDDGISWTTNQIGSSSVEAFLQEHAGQFM-G 383

Query: 292 EVNNFIPHNYIEEAMSREAI----------DDLYAPLIMGCDIA-GEGGDKTVVVFRRGN 340
                I    + +    +             ++        D A G G D + +      
Sbjct: 384 SAGTLITGFKLSKMTWTDIEATENLYRFKQPEVGHKYFACVDPAEGRGQDYSTIQIIDVT 443

Query: 341 I--IEHIFDW 348
               E +  +
Sbjct: 444 KYPYEQVAVY 453


>gi|310005651|gb|ADP00039.1| DNA maturase beta subunit [Cyanophage 9515-10a]
          Length = 577

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/395 (12%), Positives = 97/395 (24%), Gaps = 84/395 (21%)

Query: 23  ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82
           +    F+ F+     W     P      P R QL     +  +  +          +  I
Sbjct: 6   QLKDDFRYFLTAV--WTHLALP-----APTRAQL----CIAEYLQNGPK-------RLQI 47

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
            A RG+GK+ + A  +LW +       I+ ++ S+ +  +         L +    H   
Sbjct: 48  QAFRGVGKSWITAAFVLWTLYNNSDKKIMVVSASKDRADSFSIFCQRLILEVPWMSHLKP 107

Query: 143 MQSLSLHPS-----------GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
                                  +       G  +            E P+  +      
Sbjct: 108 KNDDQRWSRVSFDVGPAAPHQAPSVKSVGITGQLTGSRADLMVLDDVEVPNNSMTELQRE 167

Query: 192 GMAVFNDEASGT--------------PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
            +     E                  P                   W      R++  + 
Sbjct: 168 KLLQLVTECESILTPKKDSRIMFLGTPQTTFTVYNKLRERAYKPFVWPARY-PRKVAMYD 226

Query: 238 YDIFNIPLEDWKRYQIDTRTV--EGIDSGFHEGIISRYGLDSDVARIEILG------QFP 289
             +     +D       T                 S  G  + + +  +        +FP
Sbjct: 227 GLLAPQLEKDLNNDSELTWVPTDTRFREEDLLERESAMGRSNFMLQFMLDTSLSDAEKFP 286

Query: 290 QQEVNNFI------------------------------PHNYIEEAMSREAIDDLYAPLI 319
            +  +  I                              P +Y    M  +     Y+  I
Sbjct: 287 LKFADLIINPVNPETAPENIIWCSSKDNILKDLPCVGLPGDYYYSPMQVQGEWKPYSETI 346

Query: 320 MGCDIAGEGGDKTVVVFR-RGNIIEHIFD-WSAKL 352
              D +G G D+TV  F  + N I ++ + +++  
Sbjct: 347 CSVDPSGRGSDETVACFISQLNGIMYLHEVYASTD 381


>gi|294508906|ref|YP_003566117.1| hypothetical protein PSR_11004 [Salinibacter ruber M8]
 gi|294342043|emb|CBH22709.1| conserved hypothetical protein [Salinibacter ruber M8]
          Length = 255

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 79/260 (30%), Gaps = 40/260 (15%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P  WQ   + +                 +  ++  R  GKTT +A + L          +
Sbjct: 8   PDPWQEALLTSDWE--------------RALLNCARQSGKTTASAALALETALEATDSLV 53

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + +A +  Q K  L +  S +    P     +   L L                +++   
Sbjct: 54  LILAPARRQSKEFLRSVRSLYRDAAPDGGLDKQSELRLRL--------------ENESRI 99

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
           I         P             V  DEA+  PD    +              +  S  
Sbjct: 100 IA-------LPGKEGTVRGYTADLVIADEAARVPDAAYVATRPMLAVTGGRF--VGLSTP 150

Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290
               GWFY+ +  P ++W++ ++  +    +   F E      G      R E + +F  
Sbjct: 151 AGQRGWFYEAWTDPGQEWEQVKVTGQDCPRMTEAFLEQERREMGD--WQFRSEYMCEF-T 207

Query: 291 QEVNNFIPHNYIEEAMSREA 310
              +      +IE +++ E 
Sbjct: 208 DTEDQLFATEHIESSLTSEV 227


>gi|291336835|gb|ADD96368.1| phage terminase large subunit [uncultured organism
           MedDCM-OCT-S09-C20]
          Length = 454

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/320 (11%), Positives = 91/320 (28%), Gaps = 24/320 (7%)

Query: 40  IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMM 98
              +P+E    P        + +     +     +    +  +   G G GK+   A  +
Sbjct: 14  EPKRPVERAIDPGAADALRAKILADCLPAQREFLDDESHRILSYIGGFGSGKSFALAAKL 73

Query: 99  LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
           ++L    PG +++    +   ++  L   +   L      + +       +        +
Sbjct: 74  IFLGLRNPGGTLMACEPTFPMIRTVLVPAIDMALDQWDIEYSYRASPQPEYSINLPTGPV 133

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF--T 216
                           T   +  + +      +  A   DE   +P    +         
Sbjct: 134 ----------------TIYCQSAENYQRIRGQNICAAVWDECDTSPVDTAQKAGEMLLAR 177

Query: 217 ELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275
                   +  ++T     W Y  F      D +  ++ T+    + + F   +   Y  
Sbjct: 178 MRTGELNQLAVASTPEGFRWAYRTFVENDGPDKRLIRVRTQDNPHLPADFIPSLERNY-- 235

Query: 276 DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335
            S + +  + G F      +  P  +       +        + +G D+   G   T  +
Sbjct: 236 PSQLIQAYLEGHFVNLASCSLYP-EFDRSLNYCDTQPTENDTIWIGVDL-NVGNCVTQHL 293

Query: 336 FRRGNIIEHIFDWSAKLIQE 355
            RRG+      +   +  Q+
Sbjct: 294 VRRGDEFHFFAEKVYRDTQQ 313


>gi|85059367|ref|YP_455069.1| putative phage terminase large subunit [Sodalis glossinidius str.
           'morsitans']
 gi|84779887|dbj|BAE74664.1| putative phage terminase large subunit [Sodalis glossinidius str.
           'morsitans']
          Length = 264

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/269 (13%), Positives = 77/269 (28%), Gaps = 23/269 (8%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
            P  +K A   GRG GK+   A +++  I+ R     +C    +  + +++   ++  + 
Sbjct: 13  QPHRYKIA-KGGRGSGKSWAIARLLV-EIARRGTYRFLCAREFQASMADSVIQLIADTIQ 70

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
              +   FE+Q   +        L       ++     +                     
Sbjct: 71  REGYLKEFEIQKAYIRHLAATDSLFMFYGIKNNVTKIKS----------------LEGID 114

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253
             + +EA          ++    +      W+  ++   L+  +      P +D     +
Sbjct: 115 IAWVEEAEAVTKESWDILIPTIRKPGSE-IWVSFNSKNILDDTYQRFVVNPPDDICLLTV 173

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID- 312
                          +      D D+      GQ         I   +I  A+       
Sbjct: 174 HYTDNPHFPEVLRLEMEECKCKDYDLYLHIWEGQPVADSDLAIIKPLWIAAAVDAHMTLG 233

Query: 313 -DLYAPLIMGCDIAGEGGDKT--VVVFRR 338
            D      +G D+A EG   T   +   +
Sbjct: 234 FDAVGEKRLGFDVADEGKTATPCALCRAQ 262


>gi|311993161|ref|YP_004010027.1| gp17 terminase DNA packaging enzyme, large subunit [Enterobacteria
           phage CC31]
 gi|284177999|gb|ADB81665.1| gp17 terminase DNA packaging enzyme, large subunit [Enterobacteria
           phage CC31]
          Length = 610

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/363 (11%), Positives = 95/363 (26%), Gaps = 63/363 (17%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + R        ++ + E     +C      F  ++                  +Q + + 
Sbjct: 93  LKRANIKTNWTKEMVQEWK---KCRDDIVYFAEKYCAITHIDYGTIKVQ-LRDYQRDMLR 148

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +         +   T    +    R +GKTT+ A  +   +      ++  +A+  +  
Sbjct: 149 IMS--------SKRMTCCNLS----RQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMS 196

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
              L     + + +LP                   E  + S+ +D+              
Sbjct: 197 AEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSI-------GAY 237

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
             +           ++ DE +  P+      +I    +    ++  I+ + T      FY
Sbjct: 238 ASSPDAVRGNSFAMIYIDECAFIPNFIDAWLAIQPVISSGRRSK--IIITTTPNGLNHFY 295

Query: 239 DIFNIPLED----------WKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
           DI++  L            W   +       +  D G+     +      +  + E   +
Sbjct: 296 DIWDAALSGKSGFEPYTAIWNSVKERLYNDQDMFDDGWQWSSQTISASSLEQFKQEHCAE 355

Query: 288 FPQQEVNNFIPHNYIEEAMSREAIDD-----------LYAPLIMGCDIA-GEGGDKTVVV 335
           F        I    +      E   D                I   D + G G D   + 
Sbjct: 356 FHGTS-GTLISGMKLANMDWTEVTPDNHGFYKFKEAQPERKYIAALDCSEGRGQDYHALH 414

Query: 336 FRR 338
              
Sbjct: 415 IID 417


>gi|148257070|ref|YP_001241655.1| putative phage terminase large subunit [Bradyrhizobium sp. BTAi1]
 gi|146409243|gb|ABQ37749.1| putative phage Terminase large subunit [Bradyrhizobium sp. BTAi1]
          Length = 428

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 70/273 (25%), Gaps = 27/273 (9%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG GK+     +++       G   +CI  ++  L  +    +   ++ L     F  
Sbjct: 26  GGRGSGKSHFFGELLVETCQAERGTLAVCIREAQRTLAQSSKRLIEGKIAALGLGQGFRP 85

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
            S  +                      I  R   +   ++            + DEA   
Sbjct: 86  FSDRI---------------ATPGDGLIIFRGMQDHTAESIKSL--EGFRIAWIDEAQTL 128

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262
                  +            W    N RR +    D       +     + + R    + 
Sbjct: 129 SVRSLSLLRPTIRAPRSE-LWASW-NPRRKSDAVDDFLRSRKPDGAVVVKANWRDNPWLP 186

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS---REAIDDLYAPLI 319
           +   E       L  D       G + +     +      +        +   D   PL 
Sbjct: 187 AVLDEERRLDLALYPDRYEHIWEGDYVRAFEGAYFADLLAQARREGRIGKVAADPLLPLR 246

Query: 320 MGCDIAGEG--GDKTVVVFRR--GNIIEHIFDW 348
              DI G G   D   +   +  GN +  +  +
Sbjct: 247 AFIDIGGAGASADAFTIWIVQWVGNEVRVLDYY 279


>gi|32453660|ref|NP_861869.1| large terminase protein [Enterobacteria phage RB69]
 gi|32350479|gb|AAP76078.1| gp17 terminase DNA packaging enzyme, large subunit [Enterobacteria
           phage RB69]
          Length = 611

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 45/367 (12%), Positives = 96/367 (26%), Gaps = 65/367 (17%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + R     Q   + + E     +C      F   +                  +Q + ++
Sbjct: 93  LKRANIKTQWTYEMVAEWK---KCRDDIVYFAETYCAITHIDYGTIKVQ-LRDYQRDMLK 148

Query: 61  AVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
            +                +  +    R +GKTT+ A  +   +      ++  +A+  + 
Sbjct: 149 IMS-------------SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSM 195

Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
               L     + + +LP                   E  + S+ +D+             
Sbjct: 196 SAEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIQLDNGSSI-------GA 236

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
              +           ++ DE +  P+      +I    +    ++  I+ + T      F
Sbjct: 237 YASSPDAVRGNSFAMIYIDECAFIPNFIDSWLAIQPVISSGRRSK--IIITTTPNGLNHF 294

Query: 238 YDIFNIPLED----------WKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
           YDI+   +E           W   +       +  D G+     +         R E   
Sbjct: 295 YDIWTAAVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSKQTISASSLTQFRQEHTA 354

Query: 287 QFPQQEVNNFIP------HNYIE-----EAMSREAIDDLYAPLIMGCDIA-GEGGDKTVV 334
            F +      I        +YIE         +    +     I   D + G G D   +
Sbjct: 355 AF-EGTSGTLISGMKLAILDYIEVTPDSHGFHQFKKPEEGHKYIATLDCSEGRGQDYHAM 413

Query: 335 VFRRGNI 341
                  
Sbjct: 414 HIIDVTT 420


>gi|237745726|ref|ZP_04576206.1| phage terminase [Oxalobacter formigenes HOxBLS]
 gi|229377077|gb|EEO27168.1| phage terminase [Oxalobacter formigenes HOxBLS]
          Length = 414

 Score =  102 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 40/266 (15%), Positives = 82/266 (30%), Gaps = 27/266 (10%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
             P  +K A   GRG GK+   A  +  +  +RP + ++C    +  +++++   +   +
Sbjct: 30  FRPYRYKSA-RGGRGSGKSVHFARALTVISYSRP-VRVLCCREVQNTIRDSVHKLIGDQI 87

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
           S L    WF +   S+  S     + +  +  D +    T                    
Sbjct: 88  SALGLAPWFRITDSSIKSSVGSEFIFKG-LKYDPQGIKST-----------------EGI 129

Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF--NIPLEDWKR 250
              + +E     +     ++    + N    WI   N    +G  Y  F    P + +  
Sbjct: 130 DICWVEEGQTVSEESWSILIPTIRKENSE-IWISW-NPIDEDGPTYKRFVTAPPPDCYNA 187

Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
            +++            + +      D        LG+             Y  E    + 
Sbjct: 188 -EVNYYDNPWFPDVLRKEMEYLKATDYAAYEHVWLGKPLTVSDAVIFAGKYTVETF-PDD 245

Query: 311 IDDLYAPLIMGCDIAGEGGDKTVVVF 336
           + +    L  G D  G   D + +V 
Sbjct: 246 LWEKADRLFFGADF-GFARDPSALVR 270


>gi|220702377|pdb|3CPE|A Chain A, Crystal Structure Of T4 Gp17
          Length = 592

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/363 (11%), Positives = 94/363 (25%), Gaps = 63/363 (17%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + R     Q   + + E     +C      F   +         +        +Q + ++
Sbjct: 118 LKRANIKTQWTREMVEEWK---KCRDDIVYFAETYCAITHIDYGVIKVQ-LRDYQRDMLK 173

Query: 61  AVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
            +                +  +    R +GKTT+ A  +   +      ++  +A+  + 
Sbjct: 174 IMS-------------SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSM 220

Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
               L     + + +LP                   E  + S+ +D+             
Sbjct: 221 SAEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSI-------GA 261

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
              +           ++ ++ +  P+      +I    +    ++  I+ + T      F
Sbjct: 262 YASSPDAVRGNSFAMIYIEDCAFIPNFHDSWLAIQPVISSGRRSK--IIITTTPNGLNHF 319

Query: 238 YDIFNIPLED----------WKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
           YDI+   +E           W   +       +  D G+   I +  G      R E   
Sbjct: 320 YDIWTAAVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSSLAQFRQEHTA 379

Query: 287 QFPQQEVNNFIPHNYI----------EEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVV 335
            F                        +    +    +     I   D + G G D   + 
Sbjct: 380 AFEGTSGTLISGMKLAVMDFIEVTPDDHGFHQFKKPEPDRKYIATLDCSEGRGQDYHALH 439

Query: 336 FRR 338
              
Sbjct: 440 IID 442


>gi|320091491|gb|ADW08983.1| terminase-like protein [Clavibacter phage CN77]
          Length = 414

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 66/207 (31%), Gaps = 30/207 (14%)

Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222
           G  ++      R   ++   TF G        V  DEA G P  +        T  +   
Sbjct: 17  GSGNEAIAFGKRPTDQDIVSTFQGTR-KLRTFVALDEAGGVPPELFTGAEAVMTGQDSKI 75

Query: 223 FWIMTSNTRRLNGWFYDIFNIPL--EDWKRYQIDTRTVEGIDSG---------------- 264
             +   N       F+ IF +P   ++W  + I    +  +                   
Sbjct: 76  --VAIGNPDSRGTEFHRIFTVPALMDEWNTFTISAYDLPTVTGEVVYPDHPEKQERMLKG 133

Query: 265 -----FHEGIISRY---GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA 316
                + +     +   G        ++LG+FP +  N F P   I+        D    
Sbjct: 134 LTSLDWIQHKERVWKVGGKPDGRFLAKVLGEFPGETDNAFFPQEAIDRGNDTTI-DKPEK 192

Query: 317 PLIMGCDIAGEGGDKTVVVFRRGNIIE 343
            +IMG D+A  G D +VV   +G  + 
Sbjct: 193 GIIMGVDLARMGDDDSVVYTNQGGRVR 219


>gi|299531659|ref|ZP_07045064.1| putative phage associated protein [Comamonas testosteroni S44]
 gi|298720375|gb|EFI61327.1| putative phage associated protein [Comamonas testosteroni S44]
          Length = 436

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 85/286 (29%), Gaps = 26/286 (9%)

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126
                   P  +K  +  GRG GK+   A ++L + ++RP + ++C    +  +K ++  
Sbjct: 23  EKLAGIWEPKRYKV-MHGGRGGGKSWTVAAVLLVMAASRP-LRVLCTREIQKSIKQSVHQ 80

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
            +   ++ L    +F              E+LE  +   +    +     S         
Sbjct: 81  LLKDVITRLNLHAFF--------------EVLETEVRGINGSLFLFSGLQS---HTVDSI 123

Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPL 245
                   V+ +EA G       +++    +     +  +  N        Y  F   P 
Sbjct: 124 KSFEGCDIVWVEEAHGVSKKSWDTLIPTIRKEGSEIWLTL--NPDMETDETYQRFIATPS 181

Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYG-LDSDVARIEILGQFPQQEVNNFIPHNY--- 301
            D    +I+ R          E        + +D       G+  +        H     
Sbjct: 182 PDTWVVEINWRDNPWFPRVLDEERRKAKRTMLADDYAHIWEGKARRVAAGAIYRHEMESV 241

Query: 302 IEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
             +  +R+   D   P+    D+         +V R    +  I  
Sbjct: 242 YLDNRARDVPYDPTLPVHTVWDLGWNDAMSIALVQRGPQDVRIIGH 287


>gi|116625333|ref|YP_827489.1| hypothetical protein Acid_6278 [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116228495|gb|ABJ87204.1| hypothetical protein Acid_6278 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 260

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 76/270 (28%), Gaps = 31/270 (11%)

Query: 46  EHFSQPH--RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS 103
           E    P    W    +        + V N+     +  ++  R  GK+T+ A   +    
Sbjct: 16  EIPQGPEIADWVRGTLGFEADATQARVLNTRSK--RVLLNCTRQWGKSTVTAARAVHEAV 73

Query: 104 TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
           T+     I ++ +  Q    +                 E  +  L          E S+ 
Sbjct: 74  TKADSLTIAVSPTARQTGEFVRK--------------AEAFAGMLKMKVKGDGSNEMSLA 119

Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGM-AVFNDEASGTPDIINKSILGFFTELNPNR 222
             +    +         P T         +  +  DEAS   D +  ++           
Sbjct: 120 FPNGSRIV-------GLPGTEATVRGFSAVALLLVDEASRVEDDLYMAMRPMLAVSGGTL 172

Query: 223 FWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI 282
           +  + S      G+FY+ +      W+R  +         + + E      G    + R 
Sbjct: 173 W--LMSTPWGKRGFFYEAWANGGPTWERVSVKAEDCPRFGAEYLEEERRVMGE--RIYRQ 228

Query: 283 EILGQFPQQEVNNFIPHNYIEEAMSREAID 312
           E   +F +         + IE A S +   
Sbjct: 229 EYCCEFGESSS-AVFDRDLIEAAFSDDFGP 257


>gi|221067857|ref|ZP_03543962.1| phage terminase, large subunit, PBSX family [Comamonas testosteroni
           KF-1]
 gi|220712880|gb|EED68248.1| phage terminase, large subunit, PBSX family [Comamonas testosteroni
           KF-1]
          Length = 434

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 86/286 (30%), Gaps = 26/286 (9%)

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126
                  +P  +K  +  GRG GK+   A ++L + ++RP + ++C    +  +K ++  
Sbjct: 23  EKLAGIWDPKRYKV-MHGGRGGGKSWTVAAVLLVMAASRP-LRVLCTREIQKSIKQSVHQ 80

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
            +   ++ L    +F              E+LE  +   +    +     S         
Sbjct: 81  LLKDVIARLNLHAFF--------------EVLETEVRGINGSLFLFSGLQS---HTVDSI 123

Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPL 245
                   V+ +EA G       +++    +     +  +  N        Y  F   P 
Sbjct: 124 KSFEGCDIVWVEEAHGVSKKSWDTLIPTIRKEGSEIWLTL--NPDMETDETYQRFIATPC 181

Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYG-LDSDVARIEILGQFPQQEVNNFIPHNY--- 301
            D    +I+ R          E        + +D       G+  +        H     
Sbjct: 182 PDTWVVEINWRDNPWFPRVLDEERRKAKRTMLADDYAHIWEGKARRVAAGAIYRHEMESV 241

Query: 302 IEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
             +  +R+   D   P+    D+         +V R    +  I  
Sbjct: 242 YLDNRARDVPYDPTLPVHTVWDLGWNDAMSIALVQRGPQDVRIIGH 287


>gi|145638997|ref|ZP_01794605.1| terminase large subunit-like protein [Haemophilus influenzae
           PittII]
 gi|145271969|gb|EDK11878.1| terminase large subunit-like protein [Haemophilus influenzae
           PittII]
          Length = 379

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 62/210 (29%), Gaps = 9/210 (4%)

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213
           + ++ +  +   +             + +       T    V+ +E           ++ 
Sbjct: 14  FFDVQKTQIIGQNGSRFTFA----GLKTNITSIKSMTGIDVVWVEEGENVSKESWDILIP 69

Query: 214 FFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGIDSGFHEGIISR 272
              E       I++ N + +    Y  F   P E  K   ++ +          E +   
Sbjct: 70  TIREDGSQI--IVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFPKELMEDMEQM 127

Query: 273 YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIMGCDIAGEGGD 330
              D ++ R    G+         I   +IE A+               +G D+A EG D
Sbjct: 128 RERDYELYRHVYEGEPVADSDLAIIKPVWIESAVDAHLKLGFTTKGMKKVGFDVADEGAD 187

Query: 331 KTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360
                F  G+++  +  W    + ++    
Sbjct: 188 ANANAFVHGSVVLGVEVWKNGDVIDSANRT 217


>gi|300922509|ref|ZP_07138621.1| phage terminase large subunit [Escherichia coli MS 182-1]
 gi|300421167|gb|EFK04478.1| phage terminase large subunit [Escherichia coli MS 182-1]
          Length = 240

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 69/235 (29%), Gaps = 22/235 (9%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
               +K A   GRG GK+   A +++   + R  + I+C    +  + +++   +   + 
Sbjct: 13  EAHRYKVA-KGGRGSGKSWAIARLLV-EAARRQPVRILCARELQNSISDSVIRLLEDTIE 70

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
              +   FE+Q   +   G  AE +   +  +                            
Sbjct: 71  REGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPT-----------------KIKSLEGID 113

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
             + +EA          ++    +      W+   N + +    Y  F   P +D     
Sbjct: 114 ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNPPDDICLLT 171

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
           ++              +      +  + R   LG+         I   ++E A  
Sbjct: 172 VNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATD 226


>gi|319404714|emb|CBI78316.1| phage-related protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 442

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 78/292 (26%), Gaps = 36/292 (12%)

Query: 84  AGRGIGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAEVSKWLSMLP-HR 138
            GRG GKT   A M   +            I+C    +  L  +   E+ + +   P   
Sbjct: 27  GGRGSGKTRSFALMTAVIGYHHGKAGERGIILCARQFQNSLAESSLEEIKRAIEAYPFLS 86

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
            ++E+    +             +  +        R                  +  + D
Sbjct: 87  DYYEIGDKYIRSKDGCIVYAFAGLDRNIASVKSMGR-----------------ILLCWVD 129

Query: 199 EASGTPDIINKSILGFFTELNPN---RFWIMTSNTRRLNGWFYDIFNIPLE-DWKRYQID 254
           EA    D   + ++    E         W+   N  R N      F    + + K  +I+
Sbjct: 130 EAEPVTDAAWQILIPTLREEGKEWHSELWVTW-NPCRENAAVEKRFRFTKDPNIKGVEIN 188

Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314
            R      +  +    +      +  +    G++ Q     +     +E           
Sbjct: 189 WRDNPKFPAKLNRDRQADLEQRPEQYQHIWEGEYLQAMQGAYYQKLLLEAEQEGRITTVP 248

Query: 315 YAPLI---MGCDIAGEG--GDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC 361
             PLI   +  DI G G   D T +   +        +       E   +  
Sbjct: 249 RDPLIQVKIFWDIGGTGAKADATALWVAQ----FVGREIRVLDYYEAQGQPL 296


>gi|259418958|ref|ZP_05742875.1| phage DNA Packaging Protein [Silicibacter sp. TrichCH4B]
 gi|259345180|gb|EEW57034.1| phage DNA Packaging Protein [Silicibacter sp. TrichCH4B]
          Length = 478

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 80/296 (27%), Gaps = 36/296 (12%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134
            I  GRG GKT   A  +   +             +  +  +  Q+++ +    S  L+ 
Sbjct: 85  VILGGRGAGKTRAGAEWVRSEVEGAEPFGIGRARRMALVGETYDQVRDVMIHGDSGILAC 144

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
            P     E ++                             T                  A
Sbjct: 145 SPPDRRPEWRAGERRL------------------VWPNGATAQAFSASDPEALRGPQFDA 186

Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
            + DE +           +          R  +    T R       +   P      + 
Sbjct: 187 AWVDELAKWRRAQDAWDMLQFALRLGAAPRVCVT--TTPRNVPLLKQLLESPST-VTTHA 243

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
                   +  GF   + +RYG  S +AR E+ G               +E+   R+   
Sbjct: 244 PTEANRANLAPGFLTEVRARYGG-SRLARQELDGVMLADVDGALWTSGMLEQLQRRDRPP 302

Query: 313 DLYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC-PVG 364
                +++  D    A +G D   ++         I +W A ++ +   +G  P G
Sbjct: 303 --LDRIVVAVDPSVSAHKGSDACGIIVAGAQTQGPISEWRAYVLADHTVQGLGPTG 356


>gi|148724503|ref|YP_001285469.1| DNA packaging protein [Cyanophage Syn5]
 gi|145588148|gb|ABP87967.1| DNA packaging protein [Synechococcus phage Syn5]
          Length = 574

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 55/382 (14%), Positives = 99/382 (25%), Gaps = 83/382 (21%)

Query: 18  MLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTI 77
             + A+    FK F+     W     P     +P R QL    A+  +            
Sbjct: 4   EKLEAKMRGDFKFFLSLV--WRELDLP-----KPTRAQL----AIADYLQHGPK------ 46

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
            +  ISA RG+GK+ + A  +LW++   P   I+ I+ S+ +  N         L +   
Sbjct: 47  -RLQISAFRGVGKSWITAAFVLWVLFVDPDRKIMVISASKERADNFSIFCQKLILDIEWL 105

Query: 138 RHWFEMQSLSLHPSGWYAE-LLEQSMGIDSKHYTITCRTY----------SEERPDTFVG 186
            H     S        +     +       K   IT +              E P     
Sbjct: 106 SHLRPRDSDQRWSRISFDVGPAKPHQAPSVKSVGITGQMTGSRAHLMVFDDVEVPANSAT 165

Query: 187 PHNTHGMAVFNDEASGT--------------PDIINKSILGFFTELNPNRFWIMTSNTRR 232
                 +     E+                 P                   W      R 
Sbjct: 166 DMQREKLLQLVSESESILVPDDDARIMFLGTPQSTFTIYRKLAERSYRPFVWPARY-PRD 224

Query: 233 LNGWFYDIFNIPLEDWKR---YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG--- 286
           L+ +   +    + D ++              +        S  G  + + +  +     
Sbjct: 225 LSKYEGLLAPQLVADLEKDPELTWKPTDT-RFNELNLMERESAMGRSNFMLQFMLDTSLS 283

Query: 287 ---QFPQQEVNNFI-----------------------------PHNYIEEAMSREAIDDL 314
              +FP +  +  +                             P +     M  +     
Sbjct: 284 DAEKFPLKFQDLIVTPLGAECAEAYAWSADPRYMRKELNPVGLPGDRFYGPMYIDEGIVP 343

Query: 315 YAPLIMGCDIAGEGGDKTVVVF 336
           Y+  I+  D +G G D+TV V 
Sbjct: 344 YSETIVSVDPSGRGTDETVAVV 365


>gi|311992670|ref|YP_004009538.1| gp17 terminase DNA packaging enzyme large subunit [Acinetobacter
           phage Ac42]
 gi|298684453|gb|ADI96414.1| gp17 terminase DNA packaging enzyme large subunit [Acinetobacter
           phage Ac42]
          Length = 619

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/362 (11%), Positives = 94/362 (25%), Gaps = 61/362 (16%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + R        ++ L E     +C      F   +                  +Q + ++
Sbjct: 104 LKRANIKTSWTKEMLSEWK---KCRDDIVYFAETYCAITHIDYGTIKVK-LRDYQRDMLQ 159

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +        +    T  K +    R +GKT   A  +   +      S   +A+  +  
Sbjct: 160 LM--------DGGRLTCCKLS----RQLGKTAAVAIFLAHYVCFNKSKSAGILAHKGSMS 207

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           +  L+    + + +LP                   E  ++S+ +D+              
Sbjct: 208 EEVLFR-AKQAIELLPD-----------FLQPGIVEWNKRSIELDNGSSI-------GAY 248

Query: 181 PDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
             +           ++ DE +     +    +I    +        I+ + T      FY
Sbjct: 249 ASSPDAVRGNSFALIYIDETAFIQNWEDCWLAIQPVISSG--RHSKIIMTTTPNGMNHFY 306

Query: 239 DIFNIP---LEDWKRYQIDT--------RTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
           D++         ++ Y+                 D G+     +      +    E LG 
Sbjct: 307 DLWQGAIKGKSGFRPYEATWVSVKERLYTEAGDFDDGWEFSYRAIGSSSLEQFLQEHLGN 366

Query: 288 FPQQEVNNFIPHNYIE---EAMSREAI-------DDLYAPLIMGCDIA-GEGGDKTVVVF 336
           F             +    + +  ++         +     I   D A G G D   +  
Sbjct: 367 FSGGSNTLIAGPKLVLLEGKKIIPDSYGFYQFETPNPERKYIATLDSAEGRGQDYHALNI 426

Query: 337 RR 338
             
Sbjct: 427 ID 428


>gi|291335709|gb|ADD95314.1| DNA packaging protein B [uncultured phage MedDCM-OCT-S05-C139]
          Length = 309

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/320 (12%), Positives = 71/320 (22%), Gaps = 47/320 (14%)

Query: 27  SFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR 86
            FK F+     W     P      P R Q     A+  +  S          +  I A R
Sbjct: 11  DFKLFLQAL--WDQLDLP-----SPTRAQ----YAIADYLQSGPK-------RLQIQAFR 52

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G+GK+ +    +LW +   P   I+ I+ S+ +  N         +      H       
Sbjct: 53  GVGKSWITGAFVLWTLFNDPEKKIMIISASKERADNMSIFLQKLIIETPWLNHLQPKSDD 112

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTY----------SEERPDTFVGPHNTHGMAVF 196
                  +            K   IT +              E P   +       +   
Sbjct: 113 GRWSRISFDVACSPHQAPSVKSVGITGQLTGSRADLMILDDIEVPGNSMTELMREKLLQL 172

Query: 197 NDEASGT--------------PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242
             EA                 P                   W      R    +   I  
Sbjct: 173 CTEAESILTPKDDSRIMYLGTPQTTFTIYRKLAARNYRPFVWTARY-PRNNTPYEGLIAP 231

Query: 243 IPLEDWKRYQIDTR-TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301
              ED          T +           +  G  + + +  +             P   
Sbjct: 232 QLQEDIDNGVTPWTPTDDRFTEDDLVEREASMGRSNFMLQFMLD---TSLSDAEKFPLKM 288

Query: 302 IEEAMSREAIDDLYAPLIMG 321
            +  ++     +    ++  
Sbjct: 289 ADLVITSVNPTEAPDNVVWC 308


>gi|238695035|ref|YP_002922229.1| terminase DNA packaging enzyme large subunit [Enterobacteria phage
           JSE]
 gi|220029171|gb|ACL78106.1| terminase DNA packaging enzyme large subunit [Enterobacteria phage
           JSE]
          Length = 607

 Score =  100 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 41/385 (10%), Positives = 101/385 (26%), Gaps = 70/385 (18%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSF--KNFVMRFFPWGIKGKPLEHFSQPHRWQLEF 58
           + R     Q   + + E     + ++ F      +    +G     L        +Q + 
Sbjct: 91  LRRANIKTQYTPEMIAEWKRCRKDIVYFAETYCAITHIDYGTIKVQL------RDYQKDM 144

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           ++ +  H +    +             R +GKTT  A  +   +      ++  +A+  +
Sbjct: 145 LKIM--HENRMSAHKLS----------RQLGKTTAVAIFLAHYVCFNKDKAVGILAHKGS 192

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
                L     + + +LP                   E  ++S+ +++            
Sbjct: 193 MAVEVLER-TKQAIELLPD-----------FLQPGIVEWNKKSIVLENGSSI-------G 233

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
               +           ++ DEA+          +I    +    ++   + + T      
Sbjct: 234 AYASSPDAVRGNSFSFIYIDEAAFISAWQDAWLAIQPVISSGRESKL--IMTTTPNGLNH 291

Query: 237 FYDIFNIPLED----------WKRYQIDTRT-VEGIDSGFHEGIISRYGLDSDVARIEIL 285
           FYDI+   ++           W   +       +  D G+     +  G   +    E  
Sbjct: 292 FYDIWQSAIDGKSGYVPYEAVWHSVKERLYNKADIFDDGYEWSSQAIAGSSLEQFLQEHN 351

Query: 286 GQFPQQEVNNFIPHNYI---------EEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVV 335
            +F                       +    +          +   D + G G D   + 
Sbjct: 352 AEFFGSSGTLIRATTLSRLSFIDVVNDNGFYQFEKPKEGRKYVATLDCSEGRGQDYHALQ 411

Query: 336 FRRGNIIEHIFDWSAKLIQETNQEG 360
                    I ++  K +   +   
Sbjct: 412 IID------ITEFPYKQVAVYHSNT 430


>gi|34419588|ref|NP_899601.1| terminase DNA packaging enzyme large subunit [Vibrio phage KVP40]
 gi|13661164|dbj|BAB41133.1| gp17v [Bacteriophage KVP40]
 gi|34333269|gb|AAQ64424.1| terminase DNA packaging enzyme large subunit [Vibrio phage KVP40]
          Length = 600

 Score =  100 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 40/340 (11%), Positives = 81/340 (23%), Gaps = 59/340 (17%)

Query: 23  ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82
           +C      F   +               P  +Q E +E                  + +I
Sbjct: 98  KCRDDIVYFAENYCSIVHIDLGNIKMV-PRPYQKEMLEV-------------ADRSRFSI 143

Query: 83  -SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
               R +GKTT+    +   +          +A+  +     L   V   +  LP     
Sbjct: 144 FLLPRQLGKTTIMGIFLAHYLVFNEDKEAGILAHKGSMSMEVLER-VKNVIENLPD---- 198

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
                         E  + ++  D+                            ++ DE +
Sbjct: 199 -------FLQPGIEEWNKGNITFDNGCKL-------GAYASGSDAVRGKSFSMIYVDECA 244

Query: 202 GTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY---QIDTR 256
             P  D   K+     +        ++TS        ++D++N  ++    +       R
Sbjct: 245 FVPGFDDFWKATFPVISS-GEESKVVLTSTPN-GLNHYHDMWNAAVQGISTFEPYTTTWR 302

Query: 257 TVEGIDSGFHE-------GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY-----IEE 304
            V+       E          +      +    E L  F                  I+ 
Sbjct: 303 AVQNRLYKDGEFDDGEAFKRETIGNTSREAFSQEHLCNFLGTAGTLINGFKLSKMKGIDV 362

Query: 305 AMSREA-----IDDLYAPLIMGCDIA-GEGGDKTVVVFRR 338
               +        +     I+  D + G G D   +    
Sbjct: 363 VKDSDGWCVYKKPEEGHKYILTVDTSEGRGQDYHALHMID 402


>gi|116624478|ref|YP_826634.1| hypothetical protein Acid_5400 [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116227640|gb|ABJ86349.1| hypothetical protein Acid_5400 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 260

 Score =  100 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 71/261 (27%), Gaps = 29/261 (11%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            W    +        + V ++     +  ++  R  GK+T+ A   +       G   I 
Sbjct: 25  EWARRALGFEADAAQARVLDTRSK--RVLLNCTRQWGKSTVTAARAVHEAVKNAGSLTIA 82

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           +  +  Q    +                    +  L          E S+   +    + 
Sbjct: 83  VTPTARQTGEFVRK--------------AATFASGLEMRVKGDGHNEMSLAFPNGSRIV- 127

Query: 173 CRTYSEERPDTFVGPHNTH-GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
                   P T            +  DEAS   D +  ++           +  + S   
Sbjct: 128 ------GLPGTEATVRGFSAVTLLLIDEASRVGDDLYMAMRPMLAVSAGTLW--LMSTPH 179

Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
              G+FY+ +    E W+R  +         + + E      G    + R E   +F + 
Sbjct: 180 GKRGFFYEAWANGGETWERVSVKAEDCPRFKAEYLEEERQVMGE--RIYRQEYCCEFGET 237

Query: 292 EVNNFIPHNYIEEAMSREAID 312
                   + IE A S E   
Sbjct: 238 S-GAVFDRDLIEAAFSDEVTP 257


>gi|21280309|dbj|BAB96804.1| gp17v [Bacteriophage KVP20]
          Length = 600

 Score = 99.6 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 41/340 (12%), Positives = 81/340 (23%), Gaps = 59/340 (17%)

Query: 23  ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82
           +C      F   +               P  +Q E +E                  + +I
Sbjct: 98  KCRDDIVYFAENYCSIVHIDLGNIKMV-PRPYQKEMLEV-------------ADRSRFSI 143

Query: 83  -SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
               R +GKTT+    +   +          +A+  +     L   V   +  LP     
Sbjct: 144 FLLPRQLGKTTIMGIFLAHYLVFNEDKEAGILAHKGSMSMEVLER-VKNVIENLPD---- 198

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
                         E  + ++  D+                            ++ DE +
Sbjct: 199 -------FLQPGIEEWNKGNITFDNGCKL-------GAYASGSDAVRGKSFSMIYVDECA 244

Query: 202 GTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP---LEDWKRYQIDTR 256
             P  D   K+     +        ++TS        ++D++N     +  ++ Y    R
Sbjct: 245 FVPGFDDFWKATFPVISS-GEESKVVLTSTPN-GLNHYHDMWNAAVAGVSTFEPYTTTWR 302

Query: 257 TVEGIDSGFHE-------GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY-------I 302
            V+       E          +      +    E L  F                    I
Sbjct: 303 AVQNRLYKDGEFDDGEAFKSETIGNTSREAFSQEHLCNFLGTAGTLINGFKLSKMKGQDI 362

Query: 303 EEAMSREA---IDDLYAPLIMGCDIA-GEGGDKTVVVFRR 338
            +           +     I+  D + G G D   +    
Sbjct: 363 VKDHDGWYVYKQPEENHKYILTVDTSEGRGQDYHALHMID 402


>gi|212499721|ref|YP_002308529.1| terminase [Bacteriophage APSE-2]
 gi|238898754|ref|YP_002924436.1| APSE-2 prophage; terminase [Bacteriophage APSE-2]
 gi|211731690|gb|ACJ10178.1| terminase [Bacteriophage APSE-2]
 gi|229466514|gb|ACQ68288.1| APSE-2 prophage; terminase [Bacteriophage APSE-2]
          Length = 469

 Score = 99.6 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 37/288 (12%), Positives = 81/288 (28%), Gaps = 35/288 (12%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG  KT   A + L   S       +C+      +++++ A +   +  L  ++ F +
Sbjct: 12  GGRGGMKTVSFAKIALITASMHK-RRFLCLREFMNSIEDSVHAVLQAEVETLGLQNRFRI 70

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
            +                +   +       +        +    H       + +EA   
Sbjct: 71  LNT--------------YIEGINDSIFKYGQLAR--NIASIKSKH--DFDVAWVEEAETV 112

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL------------EDWKRY 251
            +    +++    +      W    N    +G  Y  F  P             +D    
Sbjct: 113 SEKSLDTLIPTIRKPGSE-LWFSF-NPAEEDGAVYKRFVKPYKAIIDKQGYYEDDDLYVG 170

Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311
           ++       + +            +    R    G+      +  I   ++E A+     
Sbjct: 171 KVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANYEDALIQPEWVEAAIDAHIK 230

Query: 312 D--DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETN 357
                    ++  D A  G D+  +  R G +IE    WS   + +  
Sbjct: 231 LGFKPSGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWSEGDVADAT 278


>gi|211731806|gb|ACJ10127.1| terminase [Bacteriophage APSE-3]
          Length = 469

 Score = 99.6 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 37/288 (12%), Positives = 81/288 (28%), Gaps = 35/288 (12%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG  KT   A + L   S       +C+      +++++ A +   +  L  ++ F +
Sbjct: 12  GGRGGMKTVSFAKIALITASMHK-RRFLCLREFMNSIEDSVHAVLQAEVETLGLQNRFRI 70

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
            +                +   +       +        +    H       + +EA   
Sbjct: 71  LNT--------------YIEGINDSIFKYGQLAR--NIASIKSKH--DFDVAWVEEAETV 112

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL------------EDWKRY 251
            +    +++    +      W    N    +G  Y  F  P             +D    
Sbjct: 113 SEKSLDTLIPTIRKPGSE-LWFSF-NPAEEDGAVYKRFVKPYKAIIDKQGYYEDDDLYVG 170

Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311
           ++       + +            +    R    G+      +  I   ++E A+     
Sbjct: 171 KVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANYEDALIQPEWVEAAIDAHIK 230

Query: 312 D--DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETN 357
                    ++  D A  G D+  +  R G +IE    WS   + +  
Sbjct: 231 LGFKPSGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWSEGDVADAT 278


>gi|211731737|gb|ACJ10086.1| terminase [Bacteriophage APSE-5]
          Length = 469

 Score = 99.6 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 37/288 (12%), Positives = 81/288 (28%), Gaps = 35/288 (12%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG  KT   A + L   S       +C+      +++++ A +   +  L  ++ F +
Sbjct: 12  GGRGGMKTVSFAKIALITASMHK-RRFLCLREFMNSIEDSVHAVLQAEVETLGLQNRFRI 70

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
            +                +   +       +        +    H       + +EA   
Sbjct: 71  LNT--------------YIEGINDSIFKYGQLAR--NIASIKSKH--DFDVAWVEEAETV 112

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL------------EDWKRY 251
            +    +++    +      W    N    +G  Y  F  P             +D    
Sbjct: 113 SEKSLDTLIPTIRKPGSE-LWFSF-NPAEEDGAVYKRFVKPYKELIDTQGYYEDDDLYVG 170

Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311
           ++       + +            +    R    G+      +  I   ++E A+     
Sbjct: 171 KVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANYEDALIQPEWVEAAIDAHIK 230

Query: 312 D--DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETN 357
                    ++  D A  G D+  +  R G +IE    WS   + +  
Sbjct: 231 LGFKPSGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWSEGDVADAT 278


>gi|291336431|gb|ADD95986.1| hypothetical protein Ddes_0719 [uncultured organism
           MedDCM-OCT-S04-C1073]
          Length = 311

 Score = 99.2 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 75/269 (27%), Gaps = 41/269 (15%)

Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
           ++ +       IA +  Q K+  W  + ++ + +P+                  +  E  
Sbjct: 1   MTKKKNPRYAYIAPTFKQAKSIAWDYMKQFTAKIPN-----------------TKFNETE 43

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNP 220
           + +D           +    +   G    +      DE +     +  + I    +  + 
Sbjct: 44  LRVD----LPNGSRITLLGAENSDGLRGIYLDGCVIDEYANIDGKLFAEIIRPALS--DR 97

Query: 221 NRFWIMTSNTRRLNGWFYDIFNIP--LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278
             + +       +N  FYD++      EDW  Y+      + +D    E      G    
Sbjct: 98  KGYCVFIGTPAGMNNNFYDLYQHANGAEDWFNYKAKASDTKIVDPEELEKAKEVMGEKK- 156

Query: 279 VARIEILGQFPQQEVNNFIPHNYI---EEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335
               E    +                 ++        D   P+    D+     D + ++
Sbjct: 157 -YLQEFECDWIANIEGAIYGEEIAKIEDKNQIARVPYDPTLPVSTAWDLGV--ADHSSII 213

Query: 336 FRR--GNIIEHIFDWSAKLIQETNQEGCP 362
           F +  G  ++ I         E    G P
Sbjct: 214 FFQQKGTGVQII------DYHEERGHGLP 236


>gi|29366753|ref|NP_813693.1| gp33 [Streptomyces phage phiBT1]
 gi|29243073|emb|CAD80101.1| gp33 [Streptomyces phage phiBT1]
          Length = 527

 Score = 99.2 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 40/314 (12%), Positives = 80/314 (25%), Gaps = 28/314 (8%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG---MS 109
            WQ   +                      +   R  GK+T+ A +ML+ +    G     
Sbjct: 54  PWQRTLLIDAYELTQDTFGRWRRKHRTVVVCVARKNGKSTIAAAIMLYHLIADRGDAQRQ 113

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWF-EMQSLSLHPSGWYAELLEQSMGIDSK- 167
           +I  AN   Q +  ++    + ++  P       +Q   +        ++    G     
Sbjct: 114 VIAAANDRNQAR-MVFDSAKQMVNASPKLAAVCNVQRDVIRYKDNTYRVVSADAGRQQGL 172

Query: 168 -------HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220
                        ++       T         M +    A   PD           E   
Sbjct: 173 NPAAVSLDEYAFSKSSDLFDALTLGSAARNQPMFLIISTAGPDPDGPF----AALCEQGE 228

Query: 221 NRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT---VEGIDSGFHEGIISRYGLDS 277
                   +       FY  +   L +   +             D    +   +     +
Sbjct: 229 RVNSGEADDPT----LFYRSWGPKLGETVDHLDPEVWARCNPSYDILNPDDFKAAAQRST 284

Query: 278 DV-ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVV-- 334
           +   RI  L QF +          +   A   +   +    ++ G D + +G D T +  
Sbjct: 285 EASFRIYRLSQFVRGASTWLPHGLWDSLAADDDDPLEPGDEVVCGFDGSWKG-DSTALVA 343

Query: 335 VFRRGNIIEHIFDW 348
              R   +  +  W
Sbjct: 344 CRVRDLRVFVLGHW 357


>gi|240140465|ref|YP_002964944.1| Phage terminase, large subunit, PBSX [Methylobacterium extorquens
           AM1]
 gi|240010441|gb|ACS41667.1| Phage terminase, large subunit, PBSX [Methylobacterium extorquens
           AM1]
          Length = 422

 Score = 99.2 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 80/303 (26%), Gaps = 32/303 (10%)

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
                         +K  +  GRG  K+   A  ++   +T+P M ++C    +  +  +
Sbjct: 4   EFPEKLAFLFESHRYKV-LHGGRGGSKSWGAARALIIQAATKP-MRVLCAREFQNSINES 61

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
           +   +S  +  L  R  FE+Q   +                 +    I    +S  R   
Sbjct: 62  VHQLLSNQIEELGLRSAFEIQDKRI--------------IGLNGSEFI----FSGLRHKI 103

Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN- 242
                       + +EA    +     ++    +     +  +T N        Y  F  
Sbjct: 104 DSLKSTEGIDVCWVEEAQTVSNASWSKLIPTIRKDGSEIW--VTFNPELDTDPTYQRFVV 161

Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302
            P  D K  +++                     D D       G   Q            
Sbjct: 162 NPPADAKVVRLNWSDNPWFPEVLRREKDELAARDPDAYLNVWEGATRQTLDGAVYAKEMR 221

Query: 303 EEAMS---REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
           E A          D   P+    D+     D T + F +        ++      E +Q 
Sbjct: 222 EAAAEGRIGRVQYDRTKPVHTAWDLGW--ADCTSIWFAQAVG----GEFRVIDFLEVSQR 275

Query: 360 GCP 362
             P
Sbjct: 276 AIP 278


>gi|315426011|dbj|BAJ47659.1| prophage MuMc02, terminase, ATPase subunit [Candidatus
           Caldiarchaeum subterraneum]
          Length = 439

 Score = 98.9 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/305 (18%), Positives = 98/305 (32%), Gaps = 36/305 (11%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
           H WQ  F++              P+ F+  I   RG G T   A        T P  +I+
Sbjct: 22  HPWQKRFIDD-------------PSRFRI-ILKHRGAGATFTIAAEACAEALTHPASTIL 67

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            I+ S  Q     +  V   LS L ++                  +   +  I ++   +
Sbjct: 68  LISYSLRQSLEI-FRHVRTILSRLENKRLKH-----------GHSIYRLAAKIGARTVEL 115

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
              +     P+           AV+ DEA+      N      FT +  N    + S  +
Sbjct: 116 GNGSRIISLPNNPESLRGYRADAVYVDEAAFFRGDTNLKTAIMFTTVARNGRVTLVSTPK 175

Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
              GWF++ +      W ++ +       I     E +           R E++ +F  +
Sbjct: 176 GKRGWFHEAWTTD-NTWSKHLVKLGDSPHITMHDLEELRKTMS--PLEWRQEMMCEFLDE 232

Query: 292 EVNNFIPHNYIEEAMSREAI-DDLYAPLIMGCDIAGEGGDKTVV--VFRRGNIIEH--IF 346
             N FIP+  I E +        +   + +G D      D TV+  V   G       + 
Sbjct: 233 V-NAFIPYEKILECVEDYVPARVVGGRVYVGVDFGRF-RDSTVIIAVVEDGERFRVCYVE 290

Query: 347 DWSAK 351
           +   K
Sbjct: 291 ELRQK 295


>gi|291335422|gb|ADD95035.1| phage terminase large subunit [uncultured phage MedDCM-OCT-S04-C26]
          Length = 446

 Score = 98.9 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/320 (16%), Positives = 99/320 (30%), Gaps = 34/320 (10%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
           E ++ +    H           +   +SAG G GKT     M + L +   G     +  
Sbjct: 25  ELLDRIRADLHPPQQQFFDNQNEIVGLSAGYGAGKTRALCSMAVKLAAQNIGFIGAVMEP 84

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
           +   +++    +   +L      + F    L  +           +M        + CR+
Sbjct: 85  TAPLIRDIWQTDFELFLEQYEIPYTFRASPLPEY-----------TMHFKEGDSKLLCRS 133

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTR 231
           +     + +      +   V  DE         D     ILG     N  +F     +T 
Sbjct: 134 F-----ENWSRIIGLNLSHVLVDEIDVVSPVIADKAFPKILGRLRAGNVRQFCAA--STP 186

Query: 232 RLNGWFYDIFNIP----LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
               W Y+ F         D +  ++ T+    + S F E + + Y  D  + +  + G+
Sbjct: 187 EGFRWLYNTFGTDEAKERTDRELIKMRTQDNPHLPSDFIERMQANY--DPSMLQAYLNGE 244

Query: 288 FPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
           F              E  M+    D    PL +G D    G    V+   +   +    +
Sbjct: 245 FINLTTGQVYDRFTRENNMTNIKPDIGLEPLRVGLDF-NIGNMNAVIGIVQDQKLLIFDE 303

Query: 348 WSA----KLIQETNQEGCPV 363
            S       + +T +   P+
Sbjct: 304 ISGSHDTDSLAQTIKSRYPM 323


>gi|319409256|emb|CBI82900.1| phage-related protein [Bartonella schoenbuchensis R1]
          Length = 441

 Score = 98.5 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 75/291 (25%), Gaps = 34/291 (11%)

Query: 84  AGRGIGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            GRG GKT   A M   +            I+C    +  L  +   E+ + +       
Sbjct: 27  GGRGSGKTRSFALMSAVVGYRHGKAGERGIILCARQFQNSLNESSLEEIKRAIESY---- 82

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                        +Y    +     D +              +          +  + DE
Sbjct: 83  --------SFLRDYYEIGDKYVRSKDGRIIYAFAGLDR----NIASIKSMGRILLCWVDE 130

Query: 200 ASGTPDIINKSILGFFTELNPN---RFWIMTSNTRRLNGWFYDIFNIPLEDW-KRYQIDT 255
           A    +   ++++    E   N     W+   N  R N      F    +   K  +I+ 
Sbjct: 131 AEPVTETAWQTLIPTLREEGENWHCELWVTW-NPLRENAPVEKRFRAVKDPHIKGVEINW 189

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY 315
           R         +    + +    +       G++ Q     +     +E            
Sbjct: 190 RDNPQFPDRLNRAREADFTQRPEQYNHIWEGEYLQAVQGAYYQKLLLEAEQEGRITHVPR 249

Query: 316 APLI---MGCDIAGEG--GDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC 361
            PLI   +  DI G G   D T +   +        +       E   +  
Sbjct: 250 DPLIQIKIFWDIGGTGAKADATALWVAQ----FIGREIRVLDYYEAQGQPL 296


>gi|33620526|ref|NP_891724.1| terminase DNA packaging enzyme large subunit [Enterobacteria phage
           RB49]
 gi|33347993|gb|AAQ15394.1| terminase DNA packaging enzyme large subunit [Enterobacteria phage
           RB49]
          Length = 607

 Score = 98.5 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/385 (10%), Positives = 100/385 (25%), Gaps = 70/385 (18%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSF--KNFVMRFFPWGIKGKPLEHFSQPHRWQLEF 58
           + R     Q   + + E     + ++ F      +    +G     L        +Q + 
Sbjct: 91  LRRANIKTQYTPEMIAEWKRCRKDIVYFAETYCAITHIDYGTIKVQL------RDYQKDM 144

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           ++ +  H +    +             R +GKTT  A  +   +      ++  +A+  +
Sbjct: 145 LKIM--HENRMSAHKLS----------RQLGKTTAVAIFLAHYVCFNKDKAVGILAHKGS 192

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
                L     + + +LP                   E  ++S+ +++            
Sbjct: 193 MAVEVLER-TKQAIELLPD-----------FLQPGIVEWNKKSIVLENGSSI-------G 233

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
               +           ++ DE +   +      +I    +        IMT+        
Sbjct: 234 AYASSPDAVRGNSFSFIYIDECAFIQNWTDCFLAIQPVISS-GRESKMIMTTTPN-GLNH 291

Query: 237 FYDIFNIPLED----------WKRYQIDTRT-VEGIDSGFHEGIISRYGLDSDVARIEIL 285
           FYDI+   ++           W   +       +  D G+     +  G   +    E  
Sbjct: 292 FYDIWQSAIDGKSGYVPYEAVWHSVKERLYNKADIFDDGYEWSSQAIAGSSLEQFLQEHN 351

Query: 286 GQFPQQEVNNFIPHNYI---------EEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVV 335
            +F                       +    +          +   D + G G D   + 
Sbjct: 352 AEFFGSSGTLIRATTLSRLSFIDVVNDNGFYQFEKPKEGRKYVATLDCSEGRGQDYHALQ 411

Query: 336 FRRGNIIEHIFDWSAKLIQETNQEG 360
                    I ++  K +   +   
Sbjct: 412 IID------ITEFPYKQVAVYHSNT 430


>gi|6685017|gb|AAF23757.1|AF203974_1 terminase large subunit [Enterobacteria phage RB49]
          Length = 607

 Score = 98.5 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/385 (10%), Positives = 100/385 (25%), Gaps = 70/385 (18%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSF--KNFVMRFFPWGIKGKPLEHFSQPHRWQLEF 58
           + R     Q   + + E     + ++ F      +    +G     L        +Q + 
Sbjct: 91  LRRANIKTQYTPEMIAEWKRCRKDIVYFAETYCAITHIDYGTIKVQL------RDYQKDM 144

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           ++ +  H +    +             R +GKTT  A  +   +      ++  +A+  +
Sbjct: 145 LKIM--HENRMSAHKLS----------RQLGKTTAVAIFLAHYVCFNKDKAVGILAHKGS 192

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
                L     + + +LP                   E  ++S+ +++            
Sbjct: 193 MAVEVLER-TKQAIELLPD-----------FLQPGIVEWNKKSIVLENGSSI-------G 233

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
               +           ++ DE +   +      +I    +        IMT+        
Sbjct: 234 AYASSPDAVRGNSFSFIYIDECAFIQNWTDCFLAIQPVISS-GRESKMIMTTTPN-GLNH 291

Query: 237 FYDIFNIPLED----------WKRYQIDTRT-VEGIDSGFHEGIISRYGLDSDVARIEIL 285
           FYDI+   ++           W   +       +  D G+     +  G   +    E  
Sbjct: 292 FYDIWQSAIDGKSGYVPYEAVWHSVKERLYNKADIFDDGYEWSSQAIAGSSLEQFLQEHN 351

Query: 286 GQFPQQEVNNFIPHNYI---------EEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVV 335
            +F                       +    +          +   D + G G D   + 
Sbjct: 352 AEFFGSSGTLIRATTLSRLSFIDVVNDNGFYQFEKPKEGRKYVATLDCSEGRGQDYHALQ 411

Query: 336 FRRGNIIEHIFDWSAKLIQETNQEG 360
                    I ++  K +   +   
Sbjct: 412 IID------ITEFPYKQVAVYHSNT 430


>gi|9633565|ref|NP_050979.1| P18 [Acyrthosiphon pisum bacteriophage APSE-1]
 gi|6118013|gb|AAF03961.1|AF157835_18 P18 [Endosymbiont phage APSE-1]
          Length = 469

 Score = 98.1 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 80/288 (27%), Gaps = 35/288 (12%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG  KT   A + L   S       +C+      ++++  A +   +  L  ++ F +
Sbjct: 12  GGRGGMKTVSFAKIALITASMHK-RRFLCLREFMNSIEDSGHAVLQAEVETLGLQNRFRI 70

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
            +                +   +       +        +    H       + +EA   
Sbjct: 71  LNT--------------YIEGINDSIFKYGQLAR--NIASIKSKH--DFDVAWVEEAETV 112

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL------------EDWKRY 251
            +    S++    +      W    N    +G  Y  F  P             +D    
Sbjct: 113 SEKSLDSLIPTIRKPGSE-LWFSF-NPAEEDGAVYKRFVKPYKELIDTQGYYEDDDLYVG 170

Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311
           ++       + +            +    R    G+      +  I   ++E A+     
Sbjct: 171 KVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANYEDALIQPEWVEAAIDAHIK 230

Query: 312 D--DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETN 357
                    ++  D A  G D+  +  R G +IE    WS   + +  
Sbjct: 231 LGFKPSGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWSEGDVADAT 278


>gi|319406198|emb|CBI79835.1| phage-related protein [Bartonella sp. AR 15-3]
          Length = 442

 Score = 98.1 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 75/291 (25%), Gaps = 34/291 (11%)

Query: 84  AGRGIGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            GRG GKT   A M   +            I+C    +  L  +   E+ + +       
Sbjct: 27  GGRGSGKTRSFALMTAVIGYRHGKTGERGIILCARQFQNSLAESSLEEIKRAIESY---- 82

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                      S +Y    +     D +              +          +  + DE
Sbjct: 83  --------SFLSDYYEVGDKYIRSKDGRIVYAFAGLDR----NIASVKSMGRILLCWVDE 130

Query: 200 ASGTPDIINKSILGFFTELNPN---RFWIMTSNTRRLNGWFYDIFNIPLE-DWKRYQIDT 255
           A    D   + ++    E         W+   N  R N      F    + + K  +I+ 
Sbjct: 131 AEPVTDAAWQVLIPTLREEGKEWHSELWVTW-NPCRENAAVEKRFRFTKDPNIKGVEINW 189

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY 315
           R      +  +    +      +  +    G++       +     +E            
Sbjct: 190 RDNPKFPAKLNRDRTADLEQRPEQYQHIWEGEYLLAMQGAYYQKLLLEAEQEGRITTVPR 249

Query: 316 APLI---MGCDIAGEG--GDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC 361
            PLI   +  DI G G   D T +   +        +       E   +  
Sbjct: 250 DPLIQVKIFWDIGGTGAKADATALWVAQ----FVGREIRVLDYYEAQGQPL 296


>gi|239502629|ref|ZP_04661939.1| hypothetical protein AbauAB_09982 [Acinetobacter baumannii AB900]
          Length = 414

 Score = 98.1 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 81/271 (29%), Gaps = 38/271 (14%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            + +H        +   F+  + AGR  GKT+L +  ++   S +P   I  +A +    
Sbjct: 6   RLSLHPKQMEVYLSNARFRVVV-AGRRWGKTSL-SRTLIISKSRKPRQRIWYVAPTYRMA 63

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           K  +W ++ + +                 P  W  ++   S+ I+     +       + 
Sbjct: 64  KQIMWKDLIEAI-----------------PRKWVVKINHSSLSIE----LVNGTLIELKG 102

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
            D            +  DE     +    + +              +   T +     Y 
Sbjct: 103 ADDPDSLRGVGIDFLVLDEFQDISEEAWTQCLRPTLASTGG---HAIFIGTPKAYNQLYT 159

Query: 240 IFNIPLE-------DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292
           ++    +        W+ +Q  T T   I     E   +     S   + E L  F    
Sbjct: 160 VYMQGQDPKKVKAGQWQSWQFPTITSPFIPESEIEAARADMDEKS--FKQEFLASFETMS 217

Query: 293 VNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
              + P +   +    +   D   P+ +G D
Sbjct: 218 GRVYYPFD--RKEHVGKYPFDPKLPIWIGMD 246


>gi|319899324|ref|YP_004159421.1| hypothetical protein BARCL_1179 [Bartonella clarridgeiae 73]
 gi|319403292|emb|CBI76851.1| phage-related protein [Bartonella clarridgeiae 73]
          Length = 442

 Score = 98.1 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 79/292 (27%), Gaps = 36/292 (12%)

Query: 84  AGRGIGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAEVSKWLSMLP-HR 138
            GRG GKT   A M   +            I+C    +  L  +   E+ + +   P   
Sbjct: 27  GGRGSGKTRSFALMTAVIGYRHGKAGERGIILCARQFQNSLAESSLEEIKRAIESYPFLS 86

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
            ++E+    +             +  +        R                  +  + D
Sbjct: 87  DYYEVGDKYIRSKDGCIVYAFAGLDRNIASVKSMGR-----------------ILLCWVD 129

Query: 199 EASGTPDIINKSILGFFTELNP---NRFWIMTSNTRRLNGWFYDIFNIPLE-DWKRYQID 254
           EA    D   + ++    E      +  W+   N  R N      F    + + K  +I+
Sbjct: 130 EAEPVTDAAWQILIPTLREEGKDWHSELWVTW-NPCRENAAVEKRFRFTKDPNVKGVEIN 188

Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314
            R      +  +    +      +  +    G++ Q     +     +E           
Sbjct: 189 WRDNPKFPAKLNRDRKADLEQRPEQYQYIWEGEYLQAMQGAYYQKLLLEAEQEGRITKVP 248

Query: 315 YAPLI---MGCDIAGEG--GDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC 361
             PLI   +  DI G G   D T +   +        +       E   +  
Sbjct: 249 RDPLIQIKIFWDIGGTGAKADATALWVAQ----FVGREIRVLDYYEAQGQPL 296


>gi|37651634|ref|NP_932508.1| gp17 [Aeromonas phage 44RR2.8t]
 gi|34732934|gb|AAQ81472.1| terminase DNA packaging enzyme large subunit [Aeromonas phage
           44RR2.8t]
          Length = 613

 Score = 98.1 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/398 (11%), Positives = 101/398 (25%), Gaps = 82/398 (20%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + R     +  ++ L E      C      F   +         +        +Q + + 
Sbjct: 84  LKRANIKIKWTKEMLAERK---RCKEDIVYFAENYCCIEHIDYGIIRVQ-LRDYQKDMLR 139

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +  +     N S            R +GKTT+ A  +   +      ++  +A+  +  
Sbjct: 140 IMAGNRLMAANLS------------RQLGKTTVVAIFLAHFVCFNSAKNVGILAHKASMS 187

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
              L     + L +LP                   E  + S+ + +        +     
Sbjct: 188 AEVLHR-TKQALELLPD-----------FLQPGIVEWNKGSITLGNGCAIGAFSS----- 230

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
             +           ++ DE +  P+      +I    +    ++  I+ + T      +Y
Sbjct: 231 --SPDAVRGNSFALIYVDEVAFIPNFTDAWMAIQPVISSGRRSK--ILMTTTPNGLNHWY 286

Query: 239 DIFNIP----------LEDWKRYQIDTRTVEGIDSGFHEGI---------------ISRY 273
           DI+                +  Y     +V+       + +                +  
Sbjct: 287 DIWTAAITPNSSGDGSKSGFVPYTATWSSVKERLYSDGKELSGSDSYFDDGYSWSSKTIA 346

Query: 274 GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA----------IDDLYAPLIMGCD 323
           G   D  + E    F Q      I    + +    +                   I   D
Sbjct: 347 GSALDAFQQEHNTAF-QGTSGTLINGTKLSKLNWIDIPPQDNFTMFEEPKEGRKYIATLD 405

Query: 324 IA-GEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360
            A G G D   +          I ++  K +   +   
Sbjct: 406 SAEGRGQDYHAMHIFD------ITEFPYKQVAVYHSNT 437


>gi|291334706|gb|ADD94352.1| hypothetical protein Ddes_0719 [uncultured phage
           MedDCM-OCT-S04-C890]
          Length = 311

 Score = 97.7 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 74/269 (27%), Gaps = 41/269 (15%)

Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
           +S         IA +  Q K+  W  + ++ + +P+                  +  E  
Sbjct: 1   MSKLKNPRFAYIAPTFKQAKSIAWDYMKQFTAKIPN-----------------TKFNETE 43

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNP 220
           + +D           +    +   G    +      DE +     +  + I    +  + 
Sbjct: 44  LRVD----LPNGSRITLLGAENSDGLRGIYLDGCVIDEYANIDGKLFAEIIRPALS--DR 97

Query: 221 NRFWIMTSNTRRLNGWFYDIFNIP--LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278
             + +       +N  FYD++      EDW  Y+      + +D    E      G    
Sbjct: 98  KGYCVFIGTPAGMNNNFYDLYQHANGAEDWFNYKAKASDTKIVDPEELEKAKEVMGEKK- 156

Query: 279 VARIEILGQFPQQEVNNFIPHNYI---EEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335
               E    +                 ++        D   P+    D+     D + ++
Sbjct: 157 -YLQEFECDWIANIEGAIYGEEIAKIEDKNQIARVPYDPTLPVSTAWDLGV--ADHSSII 213

Query: 336 FRR--GNIIEHIFDWSAKLIQETNQEGCP 362
           F +  G  ++ I         E    G P
Sbjct: 214 FFQQKGTGVQII------DYHEERGHGLP 236


>gi|157311455|ref|YP_001469498.1| large terminase protein [Enterobacteria phage Phi1]
 gi|149380659|gb|ABR24664.1| gp17 terminase DNA packaging enzyme large subunit [Enterobacteria
           phage Phi1]
          Length = 607

 Score = 97.7 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/385 (10%), Positives = 100/385 (25%), Gaps = 70/385 (18%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSF--KNFVMRFFPWGIKGKPLEHFSQPHRWQLEF 58
           + R     Q   + + E     + ++ F      +    +G     L        +Q + 
Sbjct: 91  LRRANIKTQYTPEMIAEWKRCRKDIVYFAETYCAITHIDYGTIKVQL------RDYQKDM 144

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           ++ +  H +    +             R +GKTT  A  +   +      ++  +A+  +
Sbjct: 145 LKIM--HENRMSAHKLS----------RQLGKTTAVAIFLAHYVCFNKDKAVGILAHKGS 192

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
                L     + + +LP                   E  ++S+ +++            
Sbjct: 193 MAVEVLER-TKQAIELLPD-----------FLQPGIVEWNKKSIVLENGSSI-------G 233

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
               +           ++ DE +   +      +I    +        IMT+        
Sbjct: 234 AYASSPDAVRGNSFSFIYIDECAFIQNWTDCFLAIQPVISS-GRESKMIMTTTPN-GLNH 291

Query: 237 FYDIFNIPLED----------WKRYQIDTRT-VEGIDSGFHEGIISRYGLDSDVARIEIL 285
           FYDI+   ++           W   +       +  D G+     +  G   +    E  
Sbjct: 292 FYDIWQSAIDGKSGYVPYEAVWHSVKERLYNKADIFDDGYEWSSQAIAGSSLEQFLQEHN 351

Query: 286 GQFPQQEVNNFIPHNYI---------EEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVV 335
            +F                       +    +          +   D + G G D   + 
Sbjct: 352 AEFFGSSGTLIRATTLSRLSFIDVVNDNGFYQFEKPKEGRKYVATLDCSEGRGQDYHALQ 411

Query: 336 FRRGNIIEHIFDWSAKLIQETNQEG 360
                    I ++  K +   +   
Sbjct: 412 IID------ITEFPYKPVAVYHSNT 430


>gi|66391955|ref|YP_238880.1| gp17 [Aeromonas phage 31]
 gi|62114792|gb|AAX63640.1| gp17 [Aeromonas phage 31]
          Length = 613

 Score = 97.7 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/398 (11%), Positives = 101/398 (25%), Gaps = 82/398 (20%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + R     +  ++ L E      C      F   +         +        +Q + + 
Sbjct: 84  LKRANIKIKWTKEMLAERK---RCKEDIVYFAENYCCIEHIDYGIIRVQ-LRDYQKDMLR 139

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +  +     N S            R +GKTT+ A  +   +      ++  +A+  +  
Sbjct: 140 IMAGNRLMAANLS------------RQLGKTTVVAIFLAHFVCFNSAKNVGILAHKASMS 187

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
              L     + L +LP                   E  + S+ + +        +     
Sbjct: 188 AEVLHR-TKQALELLPD-----------FLQPGIVEWNKGSITLGNGCAIGAFSS----- 230

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
             +           ++ DE +  P+      +I    +    ++  I+ + T      +Y
Sbjct: 231 --SPDAVRGNSFALIYVDEVAFIPNFTDAWMAIQPVISSGRRSK--ILMTTTPNGLNHWY 286

Query: 239 DIFNIP----------LEDWKRYQIDTRTVEGIDSGFHEGI---------------ISRY 273
           DI+                +  Y     +V+       + +                +  
Sbjct: 287 DIWTAAITPNSSGDGSKSGFVPYTATWSSVKERLYSDGKELSGSDSYFDDGYSWSSKTIA 346

Query: 274 GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA----------IDDLYAPLIMGCD 323
           G   D  + E    F Q      I    + +    +                   I   D
Sbjct: 347 GSALDAFQQEHNTAF-QGTSGTLINGTKLSKLNWIDIPPQDNFTMFEEPKEGRKYIATLD 405

Query: 324 IA-GEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360
            A G G D   +          I ++  K +   +   
Sbjct: 406 SAEGRGQDYHAMHIFD------ITEFPYKQVAVYHSNT 437


>gi|311992925|ref|YP_004009792.1| gp17 terminase DNA packaging enzyme large subunit [Acinetobacter
           phage Acj61]
 gi|295815214|gb|ADG36140.1| gp17 terminase DNA packaging enzyme large subunit [Acinetobacter
           phage Acj61]
          Length = 611

 Score = 97.7 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/367 (11%), Positives = 96/367 (26%), Gaps = 69/367 (18%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSF--KNFVMRFFPWGIKGKPLEHFSQPHRWQLEF 58
           + R        ++ + E     + V+ F  +   +    +G+    L        +Q + 
Sbjct: 94  LKRANIKIMWTQEMIDEWKRCRDDVVYFAERYCAITHIDYGVIKVQL------RDYQKDM 147

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
           +  +  +             + ++S   R +GKTT  A  +   +      S+  +A+  
Sbjct: 148 LRIMSGN-------------RMSVSKLSRQLGKTTAVAIFLAHYVCFNKAKSVGILAHKG 194

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
           +     L     + + +LP                   E  + ++ +D+           
Sbjct: 195 SMSAEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGNITLDNGSSI------- 235

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
                +           ++ DE +     +    +I    +        I+ + T     
Sbjct: 236 GAYASSPDAVRGNSFSLIYIDEVAFVQNWEDCWLAIQPVISSG--RHSKIVMTTTPNGMN 293

Query: 236 WFYDIFNIP----------LEDWKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
            FY I+               +W   +       +  D G+     + YG   +  R E 
Sbjct: 294 HFYTIWTAAVGKKSGFIPYESEWNAVKERLYDDNDEFDDGWSFSSKAIYGSSVEQFRQEH 353

Query: 285 LGQFPQQEVNNFIPHNY------------IEEAMSREAIDDLYAPLIMGCDIA-GEGGDK 331
            G F                          +    +          I   D A G G D 
Sbjct: 354 KGVFSGGSGTLISGMKLSVLDHSEPININDDNTFFKFKEPSPERKYIATLDSAEGRGQDY 413

Query: 332 TVVVFRR 338
             +    
Sbjct: 414 HSLNIID 420


>gi|303257560|ref|ZP_07343572.1| putative terminase B protein [Burkholderiales bacterium 1_1_47]
 gi|302859530|gb|EFL82609.1| putative terminase B protein [Burkholderiales bacterium 1_1_47]
          Length = 330

 Score = 97.7 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 56/174 (32%), Gaps = 15/174 (8%)

Query: 191 HGMAVFNDEASGTPDIIN-KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE--- 246
           +   V  DE +     +  + I     +    + W     T +    F  +++  L    
Sbjct: 2   YFDGVVIDEVAQIKPTLWGEVIRPALAD---RKGWAAFIGTPKGINLFSQLYDQALNLMS 58

Query: 247 ----DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302
               DW            ID      +        +  R E L  F   + N  IP + I
Sbjct: 59  KGDPDWIAMLYSVEQTHVIDEKELAALKVEMSE--NEFRQEFLCDFSAAQDNGLIPIDDI 116

Query: 303 EEAMSREAIDDLY--APLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354
             A ++   +  Y  APLI G D+A  G D +V+  RRG +             
Sbjct: 117 RAAANKFYRESEYMGAPLIYGIDVARFGSDASVIFKRRGLVAFEPIVIRKFDNM 170


>gi|224583103|ref|YP_002636901.1| terminase large subunit [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224467630|gb|ACN45460.1| terminase large subunit [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 492

 Score = 97.3 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/334 (13%), Positives = 90/334 (26%), Gaps = 53/334 (15%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q    EA + +         P  FK A   GRG  KT      +L       G  +IC  
Sbjct: 4   QCSIPEAFEEYLQ-------PARFKVAY-GGRGSAKTRTF-ITILLNNVIYHGWKLICFR 54

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
                +K + +AE+ + ++         +    +                 +        
Sbjct: 55  EYMKSIKESCYAEIVEEINRRNLHSLVTINKTEIF----------------ANSGGRISF 98

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF-----TELNPNR----FWI 225
            +     +   G    +  A   +EA        ++++        +           W+
Sbjct: 99  DFLRLNVENIKGY--ANFDAALVEEAENVSKDSWETLIPTVRKEFYSAEYGRVVESEIWV 156

Query: 226 MTSNTRRL---------NGWFYDIFNIPLEDWKRYQ-IDTRTVEGIDSGFHEGIISRYGL 275
              N +               Y  ++     +   + I+              +      
Sbjct: 157 A-YNPKNRLSDTHQRFVTNRIYPDYDENGNRYCIVKQINYTANPWFPETLRRDMEIMKKA 215

Query: 276 DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTV 333
           + ++ R   LG+         I   ++E A              +I   D +  G D   
Sbjct: 216 NHELYRHVYLGEPVGASEMAIIKFAWLEAATDAHIKLGWKAKGAVIAAHDPSDTGPDAKG 275

Query: 334 VVFRRGNIIEHIFDWSAKLIQETNQEGCPVGSSI 367
              R G++++ + +     I     EG    SS+
Sbjct: 276 YAVRHGSVVKRVCEGLLMDI----NEGADWASSL 305


>gi|327191373|gb|EGE58399.1| prophage MuMc02, terminase, ATPase subunit, putative [Rhizobium
           etli CNPAF512]
          Length = 248

 Score = 97.3 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 85/263 (32%), Gaps = 40/263 (15%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           +P  WQ   + A                 +  +   R  GK+T+ A++++      P   
Sbjct: 22  EPDPWQANLLRA--------------NPRRSMLLCSRQSGKSTVAAFLVIQTALFVPAAQ 67

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I+ ++ ++ Q    L+  +  +LS LP       +S             +Q   + +   
Sbjct: 68  IVVVSPTQRQSNE-LFRTIVGFLSRLPGAPRPTAES-------------KQGTELSNGAR 113

Query: 170 TITCRTYSEERPDTFVGPHN-THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
            ++        P T            V  DEA+   D +  ++        P+   +  +
Sbjct: 114 VLS-------LPGTEKTIRGIAGVDLVVMDEAARVEDALLTAVRPMMATK-PDARLVALT 165

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
                 GWFY+ +      W+R ++       I   F +  +   G  +     E   +F
Sbjct: 166 TPAGKRGWFYEAWVSDDPSWERVRVPASACPRITQQFLDEELKALG--AIKFSEEYGLEF 223

Query: 289 PQQEVNNFIPHNYIEEAMSREAI 311
                    P   IE A ++E  
Sbjct: 224 HD-PEEAVFPLAIIEAAFTQEVR 245


>gi|319407675|emb|CBI81323.1| phage-related protein [Bartonella sp. 1-1C]
          Length = 442

 Score = 97.3 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 78/292 (26%), Gaps = 36/292 (12%)

Query: 84  AGRGIGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAEVSKWLSMLP-HR 138
            GRG GKT   A M   +            I+C    +  L  +   E+ + +       
Sbjct: 27  GGRGSGKTRSFALMTAVIGYRYGKAGERGIILCARQFQNSLAESSLEEIKRAIESYSFLS 86

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
            ++E+    +     Y       +  +        R                  +  + D
Sbjct: 87  DYYEIGDKYIRSKDGYIVYAFAGLDRNIASVKSMGR-----------------ILLCWVD 129

Query: 199 EASGTPDIINKSILGFFTELNPN---RFWIMTSNTRRLNGWFYDIFNIPLE-DWKRYQID 254
           EA    D   + ++    E         W+   N  R N      F    + + K  +I+
Sbjct: 130 EAEPVTDAAWQILIPTLREEGKEWHSELWVTW-NPCRENAAVEKRFRFTEDPNIKGVEIN 188

Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314
            R      +  +    +      +  +    G++ Q     +     +E           
Sbjct: 189 WRDNPKFPAKLNRDRKADLEQRPEQYQHIWEGEYLQAMQGAYYQKLLLEAEQEGRITIVP 248

Query: 315 YAPLI---MGCDIAGEG--GDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC 361
             PLI   +  DI G G   D T +   +        +       E   +  
Sbjct: 249 RDPLIQVKIFWDIGGTGAKADATALWVAQ----FVGREIRVLDYYEAQGQPL 296


>gi|330004400|ref|ZP_08304921.1| phage terminase, large subunit, PBSX family [Klebsiella sp. MS
           92-3]
 gi|328536646|gb|EGF62969.1| phage terminase, large subunit, PBSX family [Klebsiella sp. MS
           92-3]
          Length = 418

 Score = 96.9 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 44/273 (16%), Positives = 80/273 (29%), Gaps = 37/273 (13%)

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           +  V +H        +P  FK  + AGR  GK+ L+   ++   +      +  +A +  
Sbjct: 7   LSLVQLHSGQMKVFKSPHRFKV-VCAGRRWGKSRLSISKIIKAAAADRKQRVWYVAPTYQ 65

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
             +  LW ++ + L                 P  W A+  + +M I            + 
Sbjct: 66  MARQILWDDLQEVL-----------------PRKWIAKKNDTTMTI----VLKNGSEIAL 104

Query: 179 ERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
           +  D            V  DE     PD   K +    +        ++     +    F
Sbjct: 105 KGADKPDTLRGVALNFVVLDEFQDMKPDTWYKVLRPTLSS--TRGGALIIGTP-KGFSEF 161

Query: 238 YDIFNIPLE-------DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290
           + +F I           WK +Q  T     +     E   +    D      E L  F  
Sbjct: 162 HKLFMIGQNPEMQAKGLWKSWQFVTADSPFVPDSEIEAAKNDM--DPKSFAQEYLASFEN 219

Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
                + P +       R    +   P+ +G D
Sbjct: 220 MSGRVYYPFD--RNVHVRPLQFNPRLPIWVGQD 250


>gi|82776052|ref|YP_402399.1| putative bacteriophage protein [Shigella dysenteriae Sd197]
 gi|81240200|gb|ABB60910.1| putative bacteriophage protein [Shigella dysenteriae Sd197]
          Length = 272

 Score = 96.9 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 78/253 (30%), Gaps = 23/253 (9%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GR   K+   A + +  +S +  +   C    + +++ +++  +   +     RH F +
Sbjct: 39  GGRSSSKSWDAAGIAI-FLSNKYTLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRI 97

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
            +  +                 +    +    +     +            ++ +EA   
Sbjct: 98  LNNKIINRV-------------TGSEFVFYGLWR----NIEEIKSLEGIDVLWLEEAHAL 140

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262
            +   K +     +     ++I   N   +  + +  F   P E     +I+      + 
Sbjct: 141 TEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEGTLIRKINYDENPFLS 198

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIM 320
               + I +    D D  +    G     +    I  ++IE A+        +      +
Sbjct: 199 DTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAAVDAHKTLNFEPSGRKRI 258

Query: 321 GCDIAGEGGDKTV 333
           G D+A  G DK  
Sbjct: 259 GFDVADSGTDKCA 271


>gi|319786769|ref|YP_004146244.1| phage terminase, large subunit, PBSX family [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317465281|gb|ADV27013.1| phage terminase, large subunit, PBSX family [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 439

 Score = 96.6 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 70/301 (23%), Gaps = 28/301 (9%)

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
           P  +K A   GRG GK+   A + +      PG       ++   L+     EV K L  
Sbjct: 18  PARYKGA-HGGRGSGKSHFFAGLAVEDAIAFPG-------DAGEGLRMVCIREVQKSLKH 69

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
              +   E +             +   +        I  +   +   D+       H   
Sbjct: 70  S-AKSLIEAKLAEFGMREADGFKVFNEVIKTPGDGVIIFQGMQDHTADSIKSLEGFHR-- 126

Query: 195 VFNDEASGTPDIINKSILGFFTELNP-----NRFWIMTSNTRRLNGWFYDIFNIPLE--D 247
            + +EA          +       +      +  W    N RR       +   P     
Sbjct: 127 AWVEEAQSLSSTSLGLLRPTIRWEDAGRGLTSEMWFGW-NPRRKTDPVDVLLRGPEPPTG 185

Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
               + +        S   +  +       D       G +       +     +     
Sbjct: 186 AAVVRANWSDNPWFPSVLEQERLDCLRSMPDQYEHIWEGGYATAATGAYFAQALVTAKSE 245

Query: 308 REAIDDLYAPLI---MGCDIAGEG--GDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGCP 362
                    PL+      DI G G   D   +   +        +       E   +   
Sbjct: 246 GRIGRVAADPLMTTRAYWDIGGTGAKADACAIWIVQ----FVGREVRVLDYYEAQGQPLA 301

Query: 363 V 363
            
Sbjct: 302 T 302


>gi|299534276|ref|ZP_07047625.1| phage terminase, large subunit, PBSX family [Comamonas testosteroni
           S44]
 gi|298717734|gb|EFI58742.1| phage terminase, large subunit, PBSX family [Comamonas testosteroni
           S44]
          Length = 436

 Score = 96.6 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 73/299 (24%), Gaps = 27/299 (9%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
            P  +K A   GRG GK+     M++      PG      A+    L++    EV K LS
Sbjct: 17  EPARYKGA-HGGRGSGKSHFFGEMLIEDCLYEPG------ASGGEGLRSVCIREVQKDLS 69

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
               +   E +  +L+        + + +        I  +  ++   D+          
Sbjct: 70  QS-SKALLEGKLSALNLGSADGFRVYKDVITTPGDGLIIFKGMNDYTADSVKSLEGFKR- 127

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL--EDWKRY 251
             + +EA          +            W    N R        +             
Sbjct: 128 -AWWEEAQTATQRSLDLLRPTMRAPGSQ-LWFGW-NPRFAMDPVDRMLRAAELPTGALVV 184

Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311
           Q + R      +   +  +       D       G +       +               
Sbjct: 185 QANWRDNPWFPAELEQERLDCLRQQPDKYDHIWEGGYETVNEGAYFAKQLTAAKAEGRLG 244

Query: 312 D---DLYAPLIMGCDIAGEGG--DKTVVVFRR--GNIIEHIFDWSAKLIQETNQEGCPV 363
               D    L    DI G G   D   +   +  G  +  +         E   +    
Sbjct: 245 VVAADPSMRLRAYVDIGGTGRNADSFAMWIVQFVGLQVRVL------DYYEAQGQPMAT 297


>gi|9631142|ref|NP_047924.1| gp33 [Streptomyces phage phiC31]
 gi|3947452|emb|CAA07103.1| gp33 [Streptomyces phage phiC31]
          Length = 519

 Score = 96.6 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 44/314 (14%), Positives = 85/314 (27%), Gaps = 29/314 (9%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG---MS 109
            WQ E +    V                 +   R  GK+T+ A +ML+ +    G     
Sbjct: 51  PWQRELLIDAYVLTQDTFGRWRRKHRTVVVCVARKNGKSTIAAAIMLYHLIADRGDAQRQ 110

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWF-EMQSLSLHPSGWYAELLEQSMGIDSK- 167
           II  AN   Q +  ++    + ++  P      ++Q   +        ++    G     
Sbjct: 111 IIAAANDRNQAR-MVFDSAKQMVNASPKLAAVCDVQRDVIRYKDNTYRVVSADAGRQQGL 169

Query: 168 -------HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220
                        +        T         M +    A   PD           E   
Sbjct: 170 NPAAVSLDEYAFSKHSDLFDALTLGSAARNQPMFLIISTAGPDPDGPF----AALCEQGE 225

Query: 221 NRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT---VEGIDSGFHEGIISRYGLDS 277
                   +       FY  +   L +   +             D    +   +     +
Sbjct: 226 RVNSGEADDPT----LFYRSWGPKLGETVDHLDPDVWRACNPSYDILNPDDFKAAAQRST 281

Query: 278 DV-ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVV-- 334
           +   RI  L QF +       PH   +   + +   +    +++G D + +G D T +  
Sbjct: 282 EASFRIYRLSQFVRGASTWL-PHGLWDSLAADDDPLEPGDEVVLGFDGSWKG-DSTALVA 339

Query: 335 VFRRGNIIEHIFDW 348
              R   +  +  W
Sbjct: 340 CRIRDLKVFVLGHW 353


>gi|163851850|ref|YP_001639893.1| terminase large subunit [Methylobacterium extorquens PA1]
 gi|163663455|gb|ABY30822.1| terminase large subunit [Methylobacterium extorquens PA1]
          Length = 342

 Score = 96.6 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 75/302 (24%), Gaps = 32/302 (10%)

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
                      P  +K A   GRG  K+      +L ++  +  + ++C    +  +  +
Sbjct: 4   EFPERLDFLFEPARYKIAY-GGRGGAKSWGFGRALL-IMGAQKKIRVLCAREFQNSIAES 61

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
             A +S+ + +L    ++E+Q   +                 +    I        R + 
Sbjct: 62  AHALLSQQIDLLGLSGFYEIQEKRV--------------LGSNGTEFIFK----GLRHNV 103

Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-N 242
                       + +EA          ++    +      WI   N        Y  F  
Sbjct: 104 ASVKSTEGIDVCWVEEARTVSKSSWDVLIPTIRKEGSE-IWISF-NPELEEDETYKRFVK 161

Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302
            P    K  +I  +          +  +     D         G            +  +
Sbjct: 162 NPPTGAKVVKIGWQDNPWFPDVLKQEALDLKARDPAAYLTVWDGHCKVVLDGAIYANEIM 221

Query: 303 ---EEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
              E         D   P+    D+     D T + F +        ++      +    
Sbjct: 222 AATEANRFIRVPYDGTKPVHTFWDLGR--ADMTAIWFAQVVGF----EFRIIDYYQNRGH 275

Query: 360 GC 361
             
Sbjct: 276 AL 277


>gi|83943173|ref|ZP_00955633.1| terminase, large subunit, putative [Sulfitobacter sp. EE-36]
 gi|83846181|gb|EAP84058.1| terminase, large subunit, putative [Sulfitobacter sp. EE-36]
          Length = 408

 Score = 96.2 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 80/296 (27%), Gaps = 36/296 (12%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134
            I  GRG GKT   A  +   +             +  +  +  Q++  +    S  L+ 
Sbjct: 15  VIMGGRGAGKTRAGAEWVRAQVEGSRPLDAGRCRRVALVGETIEQVREVMIFGDSGILAC 74

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
            P     + ++                               +        G       A
Sbjct: 75  SPADRRPDWEATRKRL------------------VWPNGAVATVHTAHDPEGLRGPQFDA 116

Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
            + DE +     +     +          R  +    T R  G   ++   P      + 
Sbjct: 117 AWVDELAKWKKAEETWDQLQFALRLGEDPRVCVT--TTPRNVGVLKNLLASPST-VTTHA 173

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
                   +   F E + +RY     + R E+ G               IE    R+   
Sbjct: 174 PTEANAANLAGSFLEEVRARYRGT-RLGRQELDGVLLADAEGALWTSERIEAGRVRDVPL 232

Query: 313 DLYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG-CPVG 364
                +++G D    AG G D+  +V           DW A ++ +   +G  P G
Sbjct: 233 --LDRIVVGLDPATTAGAGSDECGIVVVGAQTQGPPQDWRAVVMADCTVQGATPSG 286


>gi|293604595|ref|ZP_06686998.1| phage terminase large subunit [Achromobacter piechaudii ATCC 43553]
 gi|292817011|gb|EFF76089.1| phage terminase large subunit [Achromobacter piechaudii ATCC 43553]
          Length = 463

 Score = 96.2 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 86/278 (30%), Gaps = 24/278 (8%)

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
           P  +K  +  GR   KT     M    ++    +  +C+   + ++ ++++  V + +  
Sbjct: 33  PKPYKL-LKGGRFSSKTQDAGGMAA-FLARNYSVRFLCLRQLQNRIADSVYTVVKEKIEA 90

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
              R  F++   ++      +E                   +     +            
Sbjct: 91  AGWRDEFDIGVSTIRHKLTGSE-----------------FLFYGLARNIEEIKGTEGVDV 133

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-DWKRYQI 253
            + +E  G  +     I     +      W++  N   +  +        L  D     I
Sbjct: 134 CWIEEGEGLTEEQWSIIDPTIRKEGAEV-WVLW-NPHLITDFVQAKLPALLGADCIIRHI 191

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI-- 311
           +      + +            D D  R   LGQ    +  + I  ++IE A+       
Sbjct: 192 NYPDNPFLSATAKRKAERLKEADPDAYRHIYLGQPLSSDDASVIKFHWIEAAVDAHLKLG 251

Query: 312 DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS 349
            +L     +G D+A  G DK       G I + + +W+
Sbjct: 252 IELGGARTVGYDVADSGADKNACSVFDGAICDELDEWA 289


>gi|284008456|emb|CBA74928.1| phage terminase large subunit [Arsenophonus nasoniae]
          Length = 477

 Score = 96.2 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 34/288 (11%), Positives = 77/288 (26%), Gaps = 35/288 (12%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG  KT   A + L   S       +C+      +++++ A +   +  L  ++ F +
Sbjct: 21  GGRGGMKTVSFAKIALITASINK-RRFLCLREFMNSIEDSVHAVLQAEIETLRLQNRFRI 79

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
               +                 +       +        +    H       + +EA   
Sbjct: 80  LDNCI--------------KGINDSIFKYGQLAR--NIASIKSKH--DFDVAWVEEAETV 121

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW------------KRY 251
            +     ++    +      W    N    +G  Y  F  P +D                
Sbjct: 122 SEKSLDILIPTIRKPGSE-LWFSF-NPAEEDGAVYKRFVKPYKDIIDDKGYYEDDDLYVG 179

Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311
           ++       +              +         G+      +  I   +++ A+     
Sbjct: 180 KVSYLDNPWLPEELKNDAEKMKRDNYKKWLHVYGGECDANYDDAIIQPEWVDAAIDAHIK 239

Query: 312 D--DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETN 357
                    ++  D A  G D+  +  R G ++E    WS   + +  
Sbjct: 240 LGFKPKGIRVITFDPADSGQDEKALSKRYGVLVEDCVSWSEGDVADAT 287


>gi|82702592|ref|YP_412158.1| Phage terminase, large subunit, PBSX [Nitrosospira multiformis ATCC
           25196]
 gi|82410657|gb|ABB74766.1| Phage terminase, large subunit, PBSX [Nitrosospira multiformis ATCC
           25196]
          Length = 417

 Score = 95.8 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 76/293 (25%), Gaps = 30/293 (10%)

Query: 63  DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN 122
                       P  +K     GRG  K+   A  +L   +  P + I+C+   +  +  
Sbjct: 6   AEFPIKLRFLFEPARYKILY-GGRGGAKSWGVARALLIQAAATP-LRILCVREFQNSIVE 63

Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182
           ++   +   +  +    ++E+ +  +                 +    I          +
Sbjct: 64  SVHHLLKAQIEAIGLNSFYEVHNNVI--------------RGINGSEFIFA----GLHSN 105

Query: 183 TFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242
                       V+ +EA         +++    +     +  +T N        +  F 
Sbjct: 106 VTRIKSFEGVDRVWVEEAQTVSKTSWDTLIPTIRKEGSEIW--VTYNPELNTDETHQRFV 163

Query: 243 -IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301
             P       +I+                     D D  +    G               
Sbjct: 164 VNPPAGAVVVKINWNDNPWFPEILRREKDGLKARDPDAYQNVWEGNCRVTLEGAVYAKEL 223

Query: 302 I---EEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR--GNIIEHIFDWS 349
               EE   R    D   P+    D+     D T + F +  GN +  I  +S
Sbjct: 224 RLAQEEGRIRSVPYDEAKPVHTFFDLGW--ADNTSIWFAQTVGNELRLIDYYS 274


>gi|126011061|ref|YP_001039811.1| TerL-like protein [Burkholderia ambifaria phage BcepF1]
 gi|119712637|gb|ABL96858.1| TerL-like protein [Burkholderia ambifaria phage BcepF1]
          Length = 459

 Score = 95.8 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 85/296 (28%), Gaps = 29/296 (9%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           A+  GR   K+   A   +  ++    +  +C    + ++  +++  +   +        
Sbjct: 20  ALYGGRASSKSHDAAGFAV-YLARNYTVKFLCARQFQNKISESVYTLIKGKIDAAGWTKE 78

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
           F++   S+      AE                   +     +            ++ +EA
Sbjct: 79  FDVTISSIRHKKTGAE-----------------FLFYGIARNLNEIKSTEGVDILWLEEA 121

Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVE 259
               +     I            W++  N  +   + Y  F   P  D    QI+     
Sbjct: 122 QYLTEEQWNVINPTIRREGSQ-IWLIW-NPDQYTDFIYQNFVVNPPADCLSKQINWTENP 179

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DDLYAP 317
            +     + I   Y  D  +A     G          I   Y+  A+         +   
Sbjct: 180 FLSDTMLKVIYDEYQRDPKLAEHVYGGAPKMGGDKAIIQLQYVLAAIDAHKKLGWKIEGS 239

Query: 318 LIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA------KLIQETNQEGCPVGSSI 367
              G DIA +G D   +V   GN++    +W        K   +        GSSI
Sbjct: 240 KRTGFDIADDGDDANAIVDAIGNVVVWAEEWDGLEDELLKSSTKVFNHALEKGSSI 295


>gi|257455568|ref|ZP_05620798.1| phage terminase, large subunit, pbsx family [Enhydrobacter
           aerosaccus SK60]
 gi|257447034|gb|EEV22047.1| phage terminase, large subunit, pbsx family [Enhydrobacter
           aerosaccus SK60]
          Length = 428

 Score = 95.8 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 78/284 (27%), Gaps = 33/284 (11%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG GK+   A  +L +I T     I+C    +  +K ++   +S  ++ +        
Sbjct: 28  GGRGGGKSWEIADFLL-IIGTTAKHRILCCREVQKSIKQSVHKLLSDRIAAMGL------ 80

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
                   G + E+LE  +   +                             + +EA   
Sbjct: 81  --------GGFYEILETEIRGRNGTEFSFAGLL---GHTVDSIKSFEGATITWIEEAQTV 129

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRYQIDTRTVEGID 262
                  ++       PN   IM+ N R      Y  +  +  +D    Q++        
Sbjct: 130 SAFSLGILIPTVI-RTPNPMVIMSLNPRLPQDAVYAQYIAVERDDTAVVQVNYTDNPHCP 188

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI---EEAMSREAIDDLYAPLI 319
                        D D      LG+  +          +    +         D   P+ 
Sbjct: 189 PELIRLAEQMRDEDFDNYEHIYLGRPKEIADGAIYKAEFEAIRKSNRICNVPHDPNLPVY 248

Query: 320 MGCDIAGEGGDKTVVVFRR--GNIIEHIFDWSAKLIQETNQEGC 361
              D+     D T + F +  G  +  I         E N E  
Sbjct: 249 TSWDLGIL--DPTAIWFFQIYGKEVRVI------DYYEANNEPL 284


>gi|18466735|ref|NP_569542.1| hypothetical protein HCM2.0070c [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16506051|emb|CAD09937.1| hypothetical protein [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
          Length = 418

 Score = 95.8 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 76/273 (27%), Gaps = 37/273 (13%)

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           +  V +H        +P  FK  + AGR  GK+ L+   ++   +      +  +A +  
Sbjct: 7   LSLVQLHSGQMQVFQSPHRFKV-VCAGRRWGKSRLSISTIIRAAAKEKKQRVWYVAPTYQ 65

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
             +  LW ++ + L     R   +     +                            + 
Sbjct: 66  MARQILWDDLQEVLPRKWVRKKNDTTMTIV---------------------LKNGSEIAL 104

Query: 179 ERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
           +  D            V  DE     PD   K +    +        ++     +    F
Sbjct: 105 KGADKPDTLRGVALHFVVLDEFQDMKPDTWYKVLRPTLSS--TRGGALIIGTP-KGFSEF 161

Query: 238 YDIFNIPLE-------DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290
           + ++ I           WK +Q  T     + S   E   +    D      E L  F  
Sbjct: 162 HKLWTIGQNKDLQRKGQWKSWQFVTADSPFVPSAEIEAAKNDM--DPKSFAQEYLASFEN 219

Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
                + P +       +    +   P+ +G D
Sbjct: 220 MSGRVYYPFD--RNVHVKPLQFNPKLPIWVGQD 250


>gi|16082806|ref|NP_395360.1| hypothetical protein YPMT1.24c [Yersinia pestis CO92]
 gi|31795361|ref|NP_857813.1| hypothetical protein Y1030 [Yersinia pestis KIM]
 gi|40787951|ref|NP_857660.2| hypothetical protein YPKMT021 [Yersinia pestis KIM]
 gi|45478613|ref|NP_995469.1| hypothetical protein YP_pMT025 [Yersinia pestis biovar Microtus
           str. 91001]
 gi|52788073|ref|YP_093901.1| hypothetical protein pG8786_021 [Yersinia pestis]
 gi|108793557|ref|YP_636707.1| hypothetical protein YPA_MT0025 [Yersinia pestis Antiqua]
 gi|108793757|ref|YP_636595.1| hypothetical protein YPN_MT0025 [Yersinia pestis Nepal516]
 gi|145597216|ref|YP_001154679.1| hypothetical protein YPDSF_4052 [Yersinia pestis Pestoides F]
 gi|149192775|ref|YP_001294006.1| hypothetical protein YPE_4292 [Yersinia pestis CA88-4125]
 gi|162417876|ref|YP_001604588.1| hypothetical protein YpAngola_0076 [Yersinia pestis Angola]
 gi|165939469|ref|ZP_02228016.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166214433|ref|ZP_02240468.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167402343|ref|ZP_02307808.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167422791|ref|ZP_02314544.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167466683|ref|ZP_02331387.1| hypothetical protein YpesF_02065 [Yersinia pestis FV-1]
 gi|229896952|ref|ZP_04512111.1| hypothetical protein YPS_4795 [Yersinia pestis Pestoides A]
 gi|229897756|ref|ZP_04512911.1| hypothetical protein YPH_4790 [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229900293|ref|ZP_04515428.1| hypothetical protein YPF_4819 [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229904817|ref|ZP_04519927.1| hypothetical protein YP516_4657 [Yersinia pestis Nepal516]
 gi|270491004|ref|ZP_06208077.1| phage terminase, large subunit, PBSX family [Yersinia pestis KIM
           D27]
 gi|294502015|ref|YP_003565752.1| hypothetical protein YPZ3_pMT0023 [Yersinia pestis Z176003]
 gi|3883031|gb|AAC82691.1| unknown [Yersinia pestis KIM 10]
 gi|5834709|emb|CAB55206.1| hypothetical protein YPMT1.24c [Yersinia pestis CO92]
 gi|45357266|gb|AAS58660.1| hypothetical protein YP_pMT025 [Yersinia pestis biovar Microtus
           str. 91001]
 gi|52538002|emb|CAG27427.1| hypothetical protein [Yersinia pestis]
 gi|108777821|gb|ABG20339.1| hypothetical protein YPN_MT0025 [Yersinia pestis Nepal516]
 gi|108782104|gb|ABG16161.1| hypothetical protein YPA_MT0025 [Yersinia pestis Antiqua]
 gi|145212984|gb|ABP42389.1| hypothetical protein YPDSF_4052 [Yersinia pestis Pestoides F]
 gi|148872433|gb|ABR14922.1| hypothetical protein YPMT1.24c [Yersinia pestis CA88-4125]
 gi|162350848|gb|ABX84797.1| conserved hypothetical protein [Yersinia pestis Angola]
 gi|165912657|gb|EDR31287.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166204381|gb|EDR48861.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166958284|gb|EDR55305.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167048235|gb|EDR59643.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|229678132|gb|EEO74238.1| hypothetical protein YP516_4657 [Yersinia pestis Nepal516]
 gi|229686652|gb|EEO78733.1| hypothetical protein YPF_4819 [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229693337|gb|EEO83387.1| hypothetical protein YPH_4790 [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229699988|gb|EEO88028.1| hypothetical protein YPS_4795 [Yersinia pestis Pestoides A]
 gi|262363909|gb|ACY60628.1| hypothetical protein YPD4_pMT0023 [Yersinia pestis D106004]
 gi|262364065|gb|ACY64401.1| hypothetical protein YPD8_pMT0023 [Yersinia pestis D182038]
 gi|270334985|gb|EFA45763.1| phage terminase, large subunit, PBSX family [Yersinia pestis KIM
           D27]
 gi|294352486|gb|ADE66542.1| hypothetical protein YPZ3_pMT0023 [Yersinia pestis Z176003]
 gi|320017547|gb|ADW01117.1| hypothetical protein YPC_4788 [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 418

 Score = 95.8 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 76/273 (27%), Gaps = 37/273 (13%)

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           +  V +H        +P  FK  + AGR  GK+ L+   ++   +      +  +A +  
Sbjct: 7   LSLVQLHSGQMQVFQSPHRFKV-VCAGRRWGKSRLSISTIIRAAAKEKKQRVWYVAPTYQ 65

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
             +  LW ++ + L     R   +     +                            + 
Sbjct: 66  MARQILWDDLQEVLPRKWVRKKNDTTMTIV---------------------LKNGSEIAL 104

Query: 179 ERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
           +  D            V  DE     PD   K +    +        ++     +    F
Sbjct: 105 KGADKPDTLRGVALHFVVLDEFQDMKPDTWYKVLRPTLSS--TRGGALIIGTP-KGFSEF 161

Query: 238 YDIFNIPLE-------DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290
           + ++ I           WK +Q  T     + S   E   +    D      E L  F  
Sbjct: 162 HKLWTIGQNKDLQRKGQWKSWQFVTADSPFVPSAEIEAAKNDM--DPKSFAQEYLASFEN 219

Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
                + P +       +    +   P+ +G D
Sbjct: 220 MSGRVYYPFD--RNVHVKPLQFNPKLPIWVGQD 250


>gi|293396491|ref|ZP_06640767.1| phage terminase large subunit [Serratia odorifera DSM 4582]
 gi|291420755|gb|EFE94008.1| phage terminase large subunit [Serratia odorifera DSM 4582]
          Length = 430

 Score = 95.8 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 85/265 (32%), Gaps = 24/265 (9%)

Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
            +S +  +  +C    + +++ +++A +   +     RH F +    +            
Sbjct: 4   FLSDKYRLRFLCTRQIQNKIEESVYALLKIQIERFGLRHRFRILDNKIINRF-------- 55

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220
                +    +    +                  ++N+EA    +   + +     +   
Sbjct: 56  -----TGSEFMFYGLWR----HVDEIKSLESIDVLWNEEAHAMTEAQWEVLEPTIRKEGS 106

Query: 221 NRFWIMTSNTRRLNGWFYDIFNI-PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279
              W +  N R    + +  F + P  D    +I+      +       I +    D+++
Sbjct: 107 E-CWFLF-NPRLTTDFVWRNFVVAPPPDTLVRKINYDENPFLSRTIMNVIEAAKARDAEM 164

Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSRE--AIDDLYAPLIMGCDIAGEGGDKTVVVFR 337
                LG     +    I  ++IE A+        +      +G D+A  G DK   V+ 
Sbjct: 165 FEHVYLGMPRTDDDEAIIKLSWIEAAVDAHKALNIEPAGHRRVGFDVADSGADKCANVYA 224

Query: 338 RGNIIEHIFDWSA--KLIQETNQEG 360
            G++     +W A    + ++ +  
Sbjct: 225 HGSVALWADEWKAREDELMKSCKRT 249


>gi|239590013|ref|YP_002941860.1| gp2 [Mycobacterium phage Angel]
 gi|238890545|gb|ACR77534.1| gp2 [Mycobacterium phage Angel]
          Length = 478

 Score = 95.8 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/334 (12%), Positives = 82/334 (24%), Gaps = 64/334 (19%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            RWQ      +     + +  ++ ++    IS  R +GKT L   ++  L    PG+++I
Sbjct: 39  DRWQDGLGRLILALDGTGLYAADTSV----ISIPRQVGKTYLIGCIVFALALLTPGLTVI 94

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A+     K T  +  +   + L + H                         D   Y  
Sbjct: 95  WTAHRTKTAKETFGSMKAMCATPLVNAH----------------VRNVSDARGDEGIYLH 138

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
                     +   G        +  DEA    D     ++     +      ++T    
Sbjct: 139 NGSRILFGARENGFGLGFAGVGILVLDEAQRLTDKAMDDLIPTMNTVENPLI-LLTGTPP 197

Query: 232 RLNG------------------------WFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267
           R                           +  D    P +  +  + +             
Sbjct: 198 RPTDSGEVFTMLRQDALDGESEGTLYVEFSADEGAHPDDRAQLRKANPSYPHRTSERAIR 257

Query: 268 GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE 327
            +      +S     E  G +     +  +    +  A  R       A    G    G 
Sbjct: 258 RMRKNLTEES--FLREAFGIW-----DKVVHRPVVTAARWRRLESTGPA---AGVKPNGF 307

Query: 328 GGDKT--------VVVFRRGNIIEHIFDWSAKLI 353
           G D +         V    G+       W+    
Sbjct: 308 GVDMSHSRMVSVNAVWL-DGDQAHTEEVWAGDDT 340


>gi|109392289|ref|YP_655519.1| gp2 [Mycobacterium phage Halo]
 gi|189043089|ref|YP_001936030.1| hypothetical protein BPs1_2 [Mycobacterium phage BPs]
 gi|91980539|gb|ABE67259.1| terminase [Mycobacterium phage Halo]
 gi|171909204|gb|ACB58161.1| hypothetical protein BPs1_2 [Mycobacterium phage BPs]
 gi|255927846|gb|ACU41466.1| gp2 [Mycobacterium phage Hope]
          Length = 478

 Score = 95.8 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/334 (12%), Positives = 82/334 (24%), Gaps = 64/334 (19%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            RWQ      +     + +  ++ ++    IS  R +GKT L   ++  L    PG+++I
Sbjct: 39  DRWQDGLGRLILALDGTGLYAADTSV----ISIPRQVGKTYLIGCIVFALALLTPGLTVI 94

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A+     K T  +  +   + L + H                         D   Y  
Sbjct: 95  WTAHRTKTAKETFGSMKAMCATPLVNAH----------------VRNVSDARGDEGIYLH 138

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
                     +   G        +  DEA    D     ++     +      ++T    
Sbjct: 139 NGSRILFGARENGFGLGFAGVGILVLDEAQRLTDKAMDDLIPTMNTVENPLI-LLTGTPP 197

Query: 232 RLNG------------------------WFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267
           R                           +  D    P +  +  + +             
Sbjct: 198 RPTDSGEVFTMLRQDALDGESEGTLYVEFSADEGAHPDDRAQLRKANPSYPHRTSERAIR 257

Query: 268 GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE 327
            +      +S     E  G +     +  +    +  A  R       A    G    G 
Sbjct: 258 RMRKNLTEES--FLREAFGIW-----DKVVHRPVVTAARWRRLESTGPA---AGVKPNGF 307

Query: 328 GGDKT--------VVVFRRGNIIEHIFDWSAKLI 353
           G D +         V    G+       W+    
Sbjct: 308 GVDMSHSRMVSVNAVWL-DGDQAHTEEVWAGDDT 340


>gi|99080898|ref|YP_613052.1| hypothetical protein TM1040_1057 [Ruegeria sp. TM1040]
 gi|99037178|gb|ABF63790.1| DNA packaging protein Gp17 (Terminase) [Ruegeria sp. TM1040]
          Length = 425

 Score = 95.4 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/296 (13%), Positives = 77/296 (26%), Gaps = 36/296 (12%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134
            I  GRG GKT   A  +   +             +  +  +  Q+++ +    S  L+ 
Sbjct: 32  VILGGRGAGKTRAGAEWVRSQVEGAGPFGVGSARRVALVGETYDQVRDVMIHGDSGILAC 91

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
            P     E ++                             +                  A
Sbjct: 92  SPPDRRPEWRAGERRL------------------LWPNGASAQAFSASDPEVLRGPQFDA 133

Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
            + DE +           +          R  +    T R       +   P      + 
Sbjct: 134 AWVDELAKWRRAQEAWDMLQFALRLGTAPRVCVT--TTPRNVPLLKGLLQSPST-VTTHA 190

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
                   +   F   + +RY   S +AR E+ G             + + E   R+   
Sbjct: 191 PTEANSANLAPSFLSEVRARYAG-SRLARQELDGVLLADVDGALWSSDMLAEIQRRDTP- 248

Query: 313 DLYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC-PVG 364
                +++  D    A +G D   ++         I  W A ++ +   +G  P G
Sbjct: 249 -RLDRIVVAVDPSVSAHKGSDACGIIVAGAQTQGPISSWRAYVLADHTVQGLGPTG 303


>gi|213161040|ref|ZP_03346750.1| putative prophage terminase large subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
          Length = 421

 Score = 95.4 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 83/253 (32%), Gaps = 22/253 (8%)

Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
           ++ +  +   C    + +++ +++  +   +     RH F + +  +             
Sbjct: 1   MANKYSLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRILNNKIINRV--------- 51

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221
               +    +    +     +            ++ +EA    +   K +     +    
Sbjct: 52  ----TGSEFVFYGLWR----NIEEIKSLEGIDVLWLEEAHALTEYQWKILEPTIRKEGSE 103

Query: 222 RFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280
            ++I   N   +  + +  F   P ED    +I+      +     + I +    D +  
Sbjct: 104 CWFIF--NPGLVTDFVWRNFVVDPPEDTLIRKINYDENPFLSDTMLKVIDAARRRDPEGF 161

Query: 281 RIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD--LYAPLIMGCDIAGEGGDKTVVVFRR 338
                G     +    I  ++IE A+    + D        +G D+A  G DK   V+R 
Sbjct: 162 VHVYEGVPESDDDAAIIKLSWIEAAVDAHKVLDFGPEGRKRIGFDVADSGADKCANVYRY 221

Query: 339 GNIIEHIFDWSAK 351
           G++I    +W AK
Sbjct: 222 GSVIYWADEWKAK 234


>gi|158425199|ref|YP_001526491.1| phage-related DNA maturase [Azorhizobium caulinodans ORS 571]
 gi|158332088|dbj|BAF89573.1| phage-related DNA maturase [Azorhizobium caulinodans ORS 571]
          Length = 569

 Score = 95.4 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/377 (12%), Positives = 89/377 (23%), Gaps = 85/377 (22%)

Query: 24  CVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS 83
               F+NF+     W   G P      P   Q      + V+             +  I 
Sbjct: 20  LKADFRNFLYVV--WKHLGLP-----DPTPIQ----YDIAVYLQHGPK-------RSIIE 61

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           A RG+GK+ + +  + WL+   P   I+ ++ S+ +  +     +     M   +H    
Sbjct: 62  AFRGVGKSWVTSAFVCWLLYCNPDHKILVVSASKIRADDFTTFTLRLIKEMPVLQHLIPK 121

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY----------SEERPDTFVGPHNTHGM 193
                    +     + S     K   IT +              E P+          +
Sbjct: 122 PDQRESKVAFDVGPAKASHSPSVKSVGITGQLAGSRADTIIADDVEIPNNSQTQAMRDKL 181

Query: 194 AVFNDEASGT------------PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           +    E                P                 R W             Y   
Sbjct: 182 SELVKEFDAILKPGGRIIYLGTPQTEQSLYNELPNRGYQVRIWPARI-PDEKQRAIYGER 240

Query: 242 NIP------LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG------QFP 289
             P       + WK     +   +           + YG      +  +        ++P
Sbjct: 241 LAPYIDDLIAKGWKA--GASTDPKRFSEEDLWEREASYGRAGFSLQFMLDTRLSDADRYP 298

Query: 290 QQEVNNF------------------------------IPHNYIEEAMSREAIDDLYAPLI 319
            +  +                                   + +   M  +     Y   +
Sbjct: 299 LKLSDLIVMSLNPTLAPLKVVWASSPELAHNELPNVGFAGDRLYRPMWVDKDWTEYTGSV 358

Query: 320 MGCDIAGEGGDKTVVVF 336
           M  D +G GGD+T    
Sbjct: 359 MAIDPSGRGGDETGFAV 375


>gi|323175059|gb|EFZ60673.1| phage terminase large subunit [Escherichia coli LT-68]
          Length = 399

 Score = 95.4 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 69/215 (32%), Gaps = 9/215 (4%)

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             ++Q         +  L  + +   +    +    +     +            ++ +E
Sbjct: 4   LLKIQIDRFGLRHRFRILNNKIINRVTGSEFVFYGLWR----NIEEIKSLEGIDVLWLEE 59

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTV 258
           A    +   K +     +     ++I   N   +  + +  F   P E     +I+    
Sbjct: 60  AHALTEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEGTLIRKINYDEN 117

Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYA 316
             +     + I +    D D  +    G     +    I  ++IE A+        +   
Sbjct: 118 PFLSDTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAAVDAHKTLNFEPSG 177

Query: 317 PLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
              +G D+A  G DK   V+R G+++    +W AK
Sbjct: 178 RKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAK 212


>gi|163746673|ref|ZP_02154030.1| hypothetical protein OIHEL45_14759 [Oceanibulbus indolifex HEL-45]
 gi|161379787|gb|EDQ04199.1| hypothetical protein OIHEL45_14759 [Oceanibulbus indolifex HEL-45]
          Length = 414

 Score = 95.4 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/309 (12%), Positives = 80/309 (25%), Gaps = 32/309 (10%)

Query: 62  VDVHCHSNVNNSNPTIFKCAI-SAGRGIGKTTLNAWMMLWLISTRPG------MSIICIA 114
           +      N        ++  +   GRG GKT   A  +   +             +  + 
Sbjct: 1   MFEFWALNHQLPPEGDWRTWVIMGGRGAGKTRAGAEWVRSKVEGSRPLDPGECSRVALVG 60

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            +  Q++  +    S  L+  P     + ++                             
Sbjct: 61  ETIEQVREVMIFGDSGILACSPPDRRPDWEATRKRL------------------VWPNGA 102

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
             +        G       A + DE +             F      R  +  + T R  
Sbjct: 103 IATVHTAHDPEGLRGPQFDAAWVDELAKWKRGQEAWDQLQFALRLGERPQVCVTTTPRNV 162

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294
                +   P      +         +   F E + +RY     + R E+ G        
Sbjct: 163 DVLKALLQSPST-VTTHAPTEANAANLAGSFLEEVRARYRGT-RLGRQELDGVLLADAEG 220

Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIA---GEGGDKTVVVFRRGNIIEHIFDWSAK 351
                  +E    R  +      +++G D A   G G D+  +V           +W A 
Sbjct: 221 ALWTSALLEAG--RVQVAPELDRIVVGLDPATTSGAGSDECGIVVVGAQTQGPPQEWRAV 278

Query: 352 LIQETNQEG 360
           ++ +   +G
Sbjct: 279 VLADCTVQG 287


>gi|269941618|emb|CBI50024.1| phage protein [Staphylococcus aureus subsp. aureus TW20]
          Length = 599

 Score = 95.0 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 60/414 (14%), Positives = 109/414 (26%), Gaps = 106/414 (25%)

Query: 4   LISTDQKLEQELHEM-LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAV 62
             +T  + EQ +  + +  +    +   FV+ F                  +Q   + A+
Sbjct: 24  KRNTKSRSEQTMENIAVWISFYRENPHRFVLDFMN-----------INLRPFQCVLLWAM 72

Query: 63  DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN 122
             H           +F     A RG+GKT L+A   L      PG  II  A +++Q  N
Sbjct: 73  IHH--------QYFMF----LASRGLGKTFLSAVYCLTRCILYPGTKIIITAPTKSQGIN 120

Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182
            L    ++ LS L HR    + + +  P   +           +  +             
Sbjct: 121 VLEKIENELLSPLIHREIESINTGNQKPMIAFH----------NGSWIRVVA-------- 162

Query: 183 TFVGPHNTHGMAVFNDEASGTPDIINK-SILGFFTELNPNRFW--IMTSNTRRLNG---- 235
           +           +  DE     + +         T      F       N  R       
Sbjct: 163 SNDNARGHRANLLLVDEFVKVDEDLIDTVFKKMLTSQREPAFLHKAKYKNYPREENTQMY 222

Query: 236 ---------WFYDIFNIPLED-----------------------------WKRYQIDTRT 257
                    W YD      +                               K+ + + + 
Sbjct: 223 LSSAWMKSHWAYDSMRSFTKQMLKKKSEDDLKSFVCHIPYYTGVMEKLYSHKQMKAEAQA 282

Query: 258 VEGIDSGFHEGIISR-YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA 316
                  F   + +  +G             F ++    F P   + +A     I +   
Sbjct: 283 EGFNKMKFAMEMEAVWWGETESAFFNFNTIDFNRKLSQAFYPKEVLVQADINNPIKEPKE 342

Query: 317 PLIMGCDIAGEGG---DKTVV------------VFRRGNIIEHIFDWSAKLIQE 355
             ++  D+A  GG   D +V               R+ N +E +        Q 
Sbjct: 343 KRLLAVDVARMGGNSNDASVFSLIRLLPKGKQQYERQLNYMEDME---GIDFQT 393


>gi|240851102|ref|YP_002972504.1| phage terminase large subunit [Bartonella grahamii as4aup]
 gi|240268225|gb|ACS51813.1| phage terminase large subunit [Bartonella grahamii as4aup]
          Length = 453

 Score = 95.0 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 72/291 (24%), Gaps = 34/291 (11%)

Query: 84  AGRGIGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            GRG GKT   A M   +            I+C    +  L  +   E+ + +   P   
Sbjct: 39  GGRGSGKTRSFALMSAVVGYRHGMAGERGIILCARQFQNSLNESSLEEIKRAIESYP--- 95

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                        +Y    +     D +   +          +             + DE
Sbjct: 96  ---------FLQDYYDIGDKYIKSKDGRIVYVFAGLDR----NIASIKSMGRVFLCWVDE 142

Query: 200 ASGTPDIINKSILGFFTELNPN---RFWIMTSNTRRLNGWFYDIFNIPLEDW-KRYQIDT 255
           A    +   ++++    E   +     W+   N    N      F        K  +I+ 
Sbjct: 143 AEPVTETAWQTLIPTLREEGKDWNAELWVTW-NPCYENAPVEKRFRNVDNPHIKGAEINW 201

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE---AMSREAID 312
           R         +   +       +       G++ Q     +     +E            
Sbjct: 202 RDNPQFPEKLNRDRMDDLQQRPEQYNHIWEGEYLQAVQGAYYQKCLLEAEMEGRITTVPR 261

Query: 313 DLYAPLIMGCDIAGEG--GDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC 361
           D    + +  DI G G   D T +   +        +       E   +  
Sbjct: 262 DPLMQVRIFWDIGGTGAKADATALWVAQ----FIGREIRVLDYYEAQGQPL 308


>gi|83954308|ref|ZP_00963028.1| terminase, large subunit, putative [Sulfitobacter sp. NAS-14.1]
 gi|83841345|gb|EAP80515.1| terminase, large subunit, putative [Sulfitobacter sp. NAS-14.1]
          Length = 408

 Score = 95.0 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 80/296 (27%), Gaps = 36/296 (12%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134
            I  GRG GKT   A  +   +             +  +  +  Q++  +    S  L+ 
Sbjct: 15  VIMGGRGAGKTRAGAEWVRAQVEGSRPLDAGRCRRVALVGETIEQVREVMIFGDSGILAC 74

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
            P     + ++                               +        G       A
Sbjct: 75  SPADRRPDWEATRKRL------------------VWPNGAVATVHTAHDPEGLRGPQFDA 116

Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
            + DE +     +     +          R  +    T R  G   ++   P      + 
Sbjct: 117 AWVDELAKWKKAEETWDQLQFALRLGEDPRACVT--TTPRNVGVLKNLLASPST-VTTHA 173

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
                   +   F E + +RY     + R E+ G               IE    R+   
Sbjct: 174 PTEANAANLAGSFLEEVRARYRGT-RLGRQELDGVLLADAEGALWTSERIEAGRVRDVPL 232

Query: 313 DLYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG-CPVG 364
                +++G D    AG G D+  +V           DW A ++ +   +G  P G
Sbjct: 233 --LDRIVVGLDPATTAGAGADECGIVVVGAQTQGPPQDWRAVVLADCTVQGATPSG 286


>gi|160897385|ref|YP_001562967.1| PBSX family phage terminase large subunit [Delftia acidovorans
           SPH-1]
 gi|160362969|gb|ABX34582.1| phage terminase, large subunit, PBSX family [Delftia acidovorans
           SPH-1]
          Length = 433

 Score = 95.0 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/294 (11%), Positives = 71/294 (24%), Gaps = 34/294 (11%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSI----ICIANSETQLKNTLWAEVSKWLSMLP 136
           A   GRG GKT   A M            +    +C       L+++   E  + +   P
Sbjct: 24  ACDGGRGSGKTRSFAKMAAVKGYQYGKAGVTGILLCARQFMNSLEDSSLEECKRAIEDEP 83

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
                         + +Y    +     D +                  G      +  +
Sbjct: 84  ------------WLAAYYDVGDKYIKSRDGRITFAFAGLDRNIASIKSKG----RLLLCW 127

Query: 197 NDEASGTPDIINKSILGFFTELN---PNRFWIMTSNTRRLNGWFYDIFNIPLE-DWKRYQ 252
            DEA    D    +++    E         W+   N +R +      F    +   K  +
Sbjct: 128 VDEAEPVTDEAWTTLIPTLREEGTDWNAELWVTW-NPKRKSAPVEKRFKGSSDPRMKYVR 186

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
            + +      +      +       +       G +       +   + ++         
Sbjct: 187 CNWKDNPKFPALLERVRLRDLAERPEQYAHIWEGDYATVIEGAYFASHIVKARQDNRIGR 246

Query: 313 DLYAPLI---MGCDIAGEG--GDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC 361
               PL+      DI G G   D   +   +        +       E   +  
Sbjct: 247 VPADPLMTLRAFVDIGGTGARADAFAMWIAQ----FVGKEIRVLDYYEQVGQPL 296


>gi|213029404|ref|ZP_03343851.1| putative prophage terminase large subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 282

 Score = 95.0 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 79/246 (32%), Gaps = 22/246 (8%)

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
              C    + +++ +++  +   +     RH F + +  +                 +  
Sbjct: 7   RFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRILNNKIINRV-------------TGS 53

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
             +    +     +            ++ +EA    +   K +     +     ++I   
Sbjct: 54  EFVFYGLWR----NIEEIKSLEGIDVLWLEEAHALTEYQWKILEPTIRKEGSECWFIF-- 107

Query: 229 NTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
           N   +  + +  F   P ED    +I+      +     + I +    D +       G 
Sbjct: 108 NPGLVTDFVWRNFVVDPPEDTLIRKINYDENPFLSDTMLKVIDAARRRDPEGFVHVYEGV 167

Query: 288 FPQQEVNNFIPHNYIEEAMSREAIDD--LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHI 345
               +    I  ++IE A+    + D        +G D+A  G DK   V+R G++I   
Sbjct: 168 PESDDDAAIIKLSWIEAAVDAHKVLDFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWA 227

Query: 346 FDWSAK 351
            +W AK
Sbjct: 228 DEWKAK 233


>gi|57867562|ref|YP_189190.1| prophage, terminase, ATPase subunit [Staphylococcus epidermidis
           RP62A]
 gi|57638220|gb|AAW55008.1| prophage, terminase, ATPase subunit, putative [Staphylococcus
           epidermidis RP62A phage SP-beta]
          Length = 599

 Score = 94.6 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 60/414 (14%), Positives = 108/414 (26%), Gaps = 106/414 (25%)

Query: 4   LISTDQKLEQELHEM-LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAV 62
             +T  + EQ +  + +  +    +   FV+ F                  +Q   + A+
Sbjct: 24  KRNTKSRSEQTMENIAVWISFYRENPHRFVLDFMN-----------INLRPFQCVLLWAM 72

Query: 63  DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN 122
             H           +F     A RG+GKT L+A   L      PG  II  A +++Q  N
Sbjct: 73  IHH--------QYFMF----LASRGLGKTFLSAVYCLTRCILYPGTKIIITAPTKSQGIN 120

Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182
            L    ++ LS L HR    + + +  P   +           +  +             
Sbjct: 121 VLEKIENELLSPLIHREIESINTGNQKPMIAFH----------NGSWIRVVA-------- 162

Query: 183 TFVGPHNTHGMAVFNDEASGTPDIINK-SILGFFTELNPNRFW--IMTSNTRRLNG---- 235
           +           +  DE     + +         T      F       N  R       
Sbjct: 163 SNDNARGHRANLLLVDEFVKVDEDLIDTVFKKMLTSQREPAFLHKAKYKNYPREENTQMY 222

Query: 236 ---------WFYDIFNIPLED-----------------------------WKRYQIDTRT 257
                    W YD                                      K+ + + + 
Sbjct: 223 LSSAWMKSHWAYDSMRSFTRQMLKKKSEDDLKSFVCHIPYYTGVMEKLYSHKQMKAEAQA 282

Query: 258 VEGIDSGFHEGIISR-YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA 316
                  F   + +  +G             F ++    F P   + +A     I +   
Sbjct: 283 EGFNKMKFAMEMEAVWWGETESAFFNFNTIDFNRKLSQAFYPKEVLVQADINNPIKEPKE 342

Query: 317 PLIMGCDIAGEGG---DKTVV------------VFRRGNIIEHIFDWSAKLIQE 355
             ++  D+A  GG   D +V               R+ N +E +        Q 
Sbjct: 343 KRLLAVDVARMGGNSNDASVFSLIRLLPKGKQQYERQLNYMEDME---GIDFQT 393


>gi|211731785|gb|ACJ10115.1| terminase [Bacteriophage APSE-7]
          Length = 469

 Score = 94.6 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/288 (12%), Positives = 78/288 (27%), Gaps = 35/288 (12%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG  KT   A + L   +       +C+      +++++ A +   +  L     F +
Sbjct: 12  GGRGGMKTVSFAKIALITAAMHK-RRFLCLREFMNSIEDSVHAVLQAEVETLGLHARFRV 70

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
            +  +                 +       +        +    H       + +EA   
Sbjct: 71  LNSCI--------------EGINASIFKYGQLAR--NIASIKSKH--DFDVAWVEEAETV 112

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL------------EDWKRY 251
            +    +++    +      W    N    +G  Y  F  P             +D    
Sbjct: 113 SEKSLDTLISTIRKPGSE-LWFSF-NPSEEDGAVYQRFVKPYKAIIDKKGYYEDDDLYVG 170

Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311
            +       + +            +    R    G+      +  I   +++ A+     
Sbjct: 171 NVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANYDDALIQPEWVDAAIDAHIK 230

Query: 312 D--DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETN 357
                    ++  D A  G D+  +  R G +IE    WS   + +  
Sbjct: 231 LGFPPRGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWSEGDVADAT 278


>gi|319408093|emb|CBI81746.1| phage related protein [Bartonella schoenbuchensis R1]
 gi|319408856|emb|CBI82513.1| phage related protein [Bartonella schoenbuchensis R1]
          Length = 444

 Score = 94.6 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 70/291 (24%), Gaps = 34/291 (11%)

Query: 84  AGRGIGKTTLNAWMML----WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            GRG GKT   A M                I+C    +  L  +   E+ + +       
Sbjct: 30  GGRGSGKTRSFALMAALKGYEYGMGGISGIILCARQFQNSLAESSLQEIKRAIE------ 83

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                        +Y          D +        +S    +          +  + DE
Sbjct: 84  ------TYDFLKDYYCVGESSIKSKDGR----ISFQFSGLDRNIASIKSMGRILLCWVDE 133

Query: 200 ASGTPDIINKSILGFFTELN---PNRFWIMTSNTRRLNGWFYDIFNIPLED-WKRYQIDT 255
           A    +   ++++    E         W+   N  R N      F    +   K  +++ 
Sbjct: 134 AEPVTETAWQTLIPTLREEGEGWRAELWVTW-NPLRENAPVERRFRFTKDQNIKGVEVNW 192

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI---EEAMSREAID 312
                         +       +       G + +     +     +   +E        
Sbjct: 193 SDNPLFPQKLQRVRLDDLQNRPESYNHIWEGDYLKAVQGAYFQKEMLAAEQEGRVGRVAR 252

Query: 313 DLYAPLIMGCDIAGEG--GDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC 361
           D   P+    DI G G   D T +   +        +       E   +  
Sbjct: 253 DPLMPIRAFWDIGGTGAKADATAIWIAQ----FVGREIRVLDYYEAQGQPL 299


>gi|310722310|ref|YP_003969134.1| terminase subunit [Aeromonas phage phiAS4]
 gi|306021153|gb|ADM79688.1| terminase subunit [Aeromonas phage phiAS4]
          Length = 612

 Score = 94.2 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/376 (12%), Positives = 94/376 (25%), Gaps = 76/376 (20%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + R     +  ++ L E      C      F   +         +        +Q + + 
Sbjct: 83  LKRANIKIKWTKEMLAERK---RCKEDIVYFAENYCCIEHIDYGIIRVQ-LRDYQKDMLR 138

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +  +     N S            R +GKTT+ A  +   +      ++  +A+  +  
Sbjct: 139 IMAGNRLMAANLS------------RQLGKTTVVAIFLAHFVCFNSAKNVGILAHKASMS 186

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
              L     + L +LP                   E  + S+ + +        +     
Sbjct: 187 AEVLHR-TKQALELLPD-----------FLQPGIVEWNKGSITLGNGCAIGAFSS----- 229

Query: 181 PDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
             +           ++ DE +  P  +    +I    +        I+ + T      +Y
Sbjct: 230 --SPDAVRGNSFALIYIDEVAFIPNFNDAWLAIQPVISSG--RHSKILMTTTPNGLNHWY 285

Query: 239 DIFNIP----------LEDWKRYQIDTRTV---------------EGIDSGFHEGIISRY 273
           DI+                +  Y     +V                  D G+     +  
Sbjct: 286 DIWTAAITPNSDGSGSKSGFVPYTATWSSVKERMYSDGSKTDGSDSYFDDGYSWSAKTIA 345

Query: 274 GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA----------IDDLYAPLIMGCD 323
           G   +  + E    F Q      I    + +   +E                   I   D
Sbjct: 346 GSSLEAFQQEHNTAF-QGTSGTLINGFKLSKMTWKEVPASDNFTMFKEPIEGHKYIATLD 404

Query: 324 IA-GEGGDKTVVVFRR 338
            A G G D   +    
Sbjct: 405 SAEGRGQDYHAMHIYD 420


>gi|152982949|ref|YP_001353896.1| hypothetical protein mma_2206 [Janthinobacterium sp. Marseille]
 gi|151283026|gb|ABR91436.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 436

 Score = 94.2 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 74/278 (26%), Gaps = 37/278 (13%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRP--GMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
            + A R  GKT      ++    T          +A    Q K+  W  V ++ +++P  
Sbjct: 28  VVVAHRRAGKTVACVNELIKAALTFHGNDGRFAYVAPFYRQAKSVAWDYVKRFSAVIP-- 85

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                             + E  + ID                D            V  D
Sbjct: 86  ---------------GISINESELRID----YPNGSRIQLFGADNADALRGLFFDGVVAD 126

Query: 199 EASGTPDIIN-KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP--LEDWKRYQIDT 255
           E       +    I     +      W +   T +    F++I+      EDW    I  
Sbjct: 127 EYGDWKPSVWGYVIRPALADRGG---WAVIIGTPKGRNQFWEIYQHAGVNEDWLCLTIRA 183

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY 315
                +     E +      D    R E+   F              +        DDLY
Sbjct: 184 SESGLLPPKEIEALQLELTED--AWRQEMECDFDAALPGAIFGKEIWQAEQDGRVKDDLY 241

Query: 316 AP---LIMGCDIAGEGGDKTVVVFRR-GNIIEHIFDWS 349
            P   +    D+     D T + + + G  +  I  +S
Sbjct: 242 DPELKVHAVLDLGFT--DDTAIWWFQVGKELRIIDCYS 277


>gi|163868971|ref|YP_001610200.1| hypothetical protein Btr_1983 [Bartonella tribocorum CIP 105476]
 gi|161018647|emb|CAK02205.1| phage-related protein [Bartonella tribocorum CIP 105476]
          Length = 453

 Score = 94.2 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/291 (13%), Positives = 72/291 (24%), Gaps = 34/291 (11%)

Query: 84  AGRGIGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            GRG GKT   A M   +            I+C    +  L  +   E+ + +   P   
Sbjct: 39  GGRGSGKTRSFALMSAVVGYRHGMAGERGIILCARQFQNSLNESSLEEIKRAIEAYP--- 95

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                        +Y    +     D +   +          +             + DE
Sbjct: 96  ---------FLQDYYEIGDKYIKSKDGRIAYVFAGLDR----NIASIKSMGRVFLCWVDE 142

Query: 200 ASGTPDIINKSILGFFTELN---PNRFWIMTSNTRRLNGWFYDIFNIPLE-DWKRYQIDT 255
           A    +   ++++    E         W+   N    N      F      + K  +I+ 
Sbjct: 143 AEPVTETAWQTLIPTLREEGDDWNAELWVTW-NPYHENAPVEKRFRNVDNPNIKGVEINW 201

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE---AMSREAID 312
           R         +   +S      +       G + Q     +     +E            
Sbjct: 202 RDNPKFPEKLNRDRLSDLQQRPEQYNHIWEGGYLQAVQGAYYQKCLLEAEMEGRITTVPR 261

Query: 313 DLYAPLIMGCDIAGEG--GDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC 361
           D    + +  DI G G   D T +   +        +       E   +  
Sbjct: 262 DPLMQVRIFWDIGGTGAKADATALWVAQ----FVGREIRVLDYYEAQGQPL 308


>gi|254485756|ref|ZP_05098961.1| phage DNA Packaging Protein [Roseobacter sp. GAI101]
 gi|214042625|gb|EEB83263.1| phage DNA Packaging Protein [Roseobacter sp. GAI101]
          Length = 452

 Score = 93.9 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 79/296 (26%), Gaps = 36/296 (12%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134
            I  GRG GKT   A  +  ++             +  +  +  Q++  +    S  L+ 
Sbjct: 59  VIMGGRGAGKTRAGAEWVRSMVEGARPLDAGRCRRVALVGETIEQVREVMIFGDSGILAC 118

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
            P     + ++                               S        G       A
Sbjct: 119 SPADRRPDWEATRKRL------------------VWPNGAVASVHTAHDPEGLRGPQFDA 160

Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
            + DE +     +     +          R  +    T R       +   P      + 
Sbjct: 161 AWVDELAKWKKAEETWDQLQFALRLGEDPRVCVT--TTPRNVDVLKKLLASPST-VTTHA 217

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
                   +   F E + +RY     + R E+ G               +E    R    
Sbjct: 218 PTEANAANLAGSFLEEVRARYRGT-RLGRQELDGVLLADAEGALWTSEMLERG--RIEKL 274

Query: 313 DLYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG-CPVG 364
             +  +++G D    AG G D+  +V           +W A ++ +   +G  P G
Sbjct: 275 PTFDRIVVGVDPATTAGAGSDECGIVVVGAQTQGAPQNWRAVVLADCTAQGATPSG 330


>gi|211731761|gb|ACJ10100.1| terminase [Bacteriophage APSE-4]
          Length = 469

 Score = 93.9 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/288 (11%), Positives = 80/288 (27%), Gaps = 35/288 (12%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG  KT   A + L   +       +C+      +++++ A +   +  L  +  F +
Sbjct: 12  GGRGGMKTVSFAKIALLTAAMHK-RRFLCLREFINSIEDSVHAVLQAEVETLGLQVRFRV 70

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
            +  +                 +       +        +    H       + +EA   
Sbjct: 71  LNSCI--------------EGINDSIFKYGQLAR--NIASIKSKH--DFDVAWVEEAETV 112

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL------------EDWKRY 251
            +    +++    +      W    N    +G  Y  F  P             ++    
Sbjct: 113 SEKSLDTLIPTIRKPGSE-LWFSF-NPAEEDGAVYRRFVKPYKAIIDKQGYYEDDEVYVG 170

Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311
           ++       + +            +    R    G+      +  I   +++ A+     
Sbjct: 171 KVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANYGDALIQPEWVDAAIDAHIK 230

Query: 312 D--DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETN 357
                    ++  D A  G D+  +  R G +IE    WS   + +  
Sbjct: 231 LGFKPSGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWSEGDVADAT 278


>gi|213423381|ref|ZP_03356369.1| putative prophage terminase large subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 414

 Score = 93.5 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 79/244 (32%), Gaps = 22/244 (9%)

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
            C    + +++ +++  +   +     RH F + +  +                 +    
Sbjct: 3   CCARQIQNKIEESVYTLLKIQIDRFGLRHRFRILNNKIINRV-------------TGSEF 49

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
           +    +     +            ++ +EA    +   K +     +     ++I   N 
Sbjct: 50  VFYGLWR----NIEEIKSLEGIDVLWLEEAHALTEYQWKILEPTIRKEGSECWFIF--NP 103

Query: 231 RRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
             +  + +  F   P ED    +I+      +     + I +    D +       G   
Sbjct: 104 GLVTDFVWRNFVVDPPEDTLIRKINYDENPFLSDTMLKVIDAARRRDPEGFVHVYEGVPE 163

Query: 290 QQEVNNFIPHNYIEEAMSREAIDD--LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
             +    I  ++IE A+    + D        +G D+A  G DK   V+R G++I    +
Sbjct: 164 SDDDAAIIKLSWIEAAVDAHKVLDFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADE 223

Query: 348 WSAK 351
           W AK
Sbjct: 224 WKAK 227


>gi|212703250|ref|ZP_03311378.1| hypothetical protein DESPIG_01292 [Desulfovibrio piger ATCC 29098]
 gi|212673294|gb|EEB33777.1| hypothetical protein DESPIG_01292 [Desulfovibrio piger ATCC 29098]
          Length = 330

 Score = 93.5 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 60/173 (34%), Gaps = 15/173 (8%)

Query: 197 NDE-ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-------IPLEDW 248
            DE A   P++  + +     +   +    +   T +    F +++             W
Sbjct: 1   MDEVAQMKPEVWGEVVQPALADRRGS---AVFIGTPKGANLFAELYQRGMAAQAQGDAAW 57

Query: 249 KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR 308
                   + + + +   E +        +  R E+L  F     +  IP   + EA +R
Sbjct: 58  CALSYPVTSTDVLPAEDVERLRRELSD--NAFRQEMLCDFTASSDDILIPLPDVLEAEAR 115

Query: 309 EAIDD--LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
           +   D     P+I+G D+A  G D +V+V R+G  ++           +    
Sbjct: 116 QLAWDDVGGMPVILGVDVARFGADSSVIVRRQGLKVDGPVVMRGLDNMQLADR 168


>gi|166012063|ref|ZP_02232961.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|167427125|ref|ZP_02318878.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|2996304|gb|AAC13184.1| P-loop protein [Yersinia pestis KIM 10]
 gi|165988997|gb|EDR41298.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|167053876|gb|EDR63708.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis
           str. K1973002]
          Length = 402

 Score = 93.5 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 71/257 (27%), Gaps = 37/257 (14%)

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
           P  FK  + AGR  GK+ L+   ++   +      +  +A +    +  LW ++ + L  
Sbjct: 7   PHRFKV-VCAGRRWGKSRLSISTIIRAAAKEKKQRVWYVAPTYQMARQILWDDLQEVLPR 65

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
              R   +     +                            + +  D            
Sbjct: 66  KWVRKKNDTTMTIV---------------------LKNGSEIALKGADKPDTLRGVALHF 104

Query: 195 VFNDEAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE------- 246
           V  DE     PD   K +    +        ++     +    F+ ++ I          
Sbjct: 105 VVLDEFQDMKPDTWYKVLRPTLSS--TRGGALIIGTP-KGFSEFHKLWTIGQNKDLQRKG 161

Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306
            WK +Q  T     + S   E   +    D      E L  F       + P +      
Sbjct: 162 QWKSWQFVTADSPFVPSAEIEAAKNDM--DPKSFAQEYLASFENMSGRVYYPFD--RNVH 217

Query: 307 SREAIDDLYAPLIMGCD 323
            +    +   P+ +G D
Sbjct: 218 VKPLQFNPKLPIWVGQD 234


>gi|309797383|ref|ZP_07691776.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
           145-7]
 gi|308119007|gb|EFO56269.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
           145-7]
          Length = 418

 Score = 93.1 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 75/273 (27%), Gaps = 37/273 (13%)

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           +  V +H        +P  FK  + AGR  GK+ L+   ++   +      +  +A +  
Sbjct: 7   LSLVQLHSGQMKVFQSPHRFKV-VCAGRRWGKSRLSISTIIRAAAKEKKQRVWYVAPTYQ 65

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
             +  LW ++ + L     R   +     +                            + 
Sbjct: 66  MARQILWDDLQEVLPRKWVRKKNDTTMTIV---------------------LKNGSEIAL 104

Query: 179 ERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
           +  D            V  DE      D   K +    +        ++     +    F
Sbjct: 105 KGADKPDTLRGVALHFVVLDEFQDMKADTWYKVLRPTLSS--TRGGALIIGTP-KGFSEF 161

Query: 238 YDIFNIPLE-------DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290
           + ++ I           WK +Q  T     + +   E   +    D      E L  F  
Sbjct: 162 HKLWTIGQNVELQRKGQWKSWQFVTADSPFVPTAEIEAAKNDM--DPKSFAQEYLASFEN 219

Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
                + P +       +    +   P+ +G D
Sbjct: 220 MSGRVYYPFD--RNVHVKPLQFNPRLPIWVGQD 250


>gi|293411885|ref|ZP_06654610.1| predicted protein [Escherichia coli B354]
 gi|220980013|emb|CAP72205.1| Hypothetical protein [Escherichia coli LF82]
 gi|291469440|gb|EFF11929.1| predicted protein [Escherichia coli B354]
 gi|323934319|gb|EGB30739.1| PBSX family protein phage terminase [Escherichia coli E1520]
          Length = 418

 Score = 93.1 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 75/273 (27%), Gaps = 37/273 (13%)

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           +  V +H        +P  FK  + AGR  GK+ L+   ++   +      +  +A +  
Sbjct: 7   LSLVQLHSGQMKVFQSPHRFKV-VCAGRRWGKSRLSISTIIRAAAKEKKQRVWYVAPTYQ 65

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
             +  LW ++ + L     R   +     +                            + 
Sbjct: 66  MARQILWDDLQEVLPRKWVRKKNDTTMTIV---------------------LKNGSEIAL 104

Query: 179 ERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
           +  D            V  DE      D   K +    +        ++     +    F
Sbjct: 105 KGADKPDTLRGVALHFVVLDEFQDMKADTWYKVLRPTLSS--TRGGALIIGTP-KGFSEF 161

Query: 238 YDIFNIPLE-------DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290
           + ++ I           WK +Q  T     + +   E   +    D      E L  F  
Sbjct: 162 HKLWTIGQNVELQRKGQWKSWQFVTADSPFVPTAEIEAAKNDM--DPKSFAQEYLASFEN 219

Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
                + P +       +    +   P+ +G D
Sbjct: 220 MSGRVYYPFD--RNVHVKPLQFNPRLPIWVGQD 250


>gi|289805729|ref|ZP_06536358.1| putative prophage terminase large subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 257

 Score = 92.7 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 82/233 (35%), Gaps = 11/233 (4%)

Query: 124 LWAEVSKWLSMLPHR--HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
           ++A +++  + L +R   ++++Q         +  L  + +   +    +    +     
Sbjct: 14  VFAALARSRTKLKNRFTRFYKIQIDRFGLRHRFRILNNKIINRVTGSEFVFYGLWR---- 69

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           +            ++ +EA    +   K +     +     ++I   N   +  + +  F
Sbjct: 70  NIEEIKSLEGIDVLWLEEAHALTEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNF 127

Query: 242 N-IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
              P ED    +I+      +     + I +    D +       G     +    I  +
Sbjct: 128 VVDPPEDTLIRKINYDENPFLSDTMLKVIDAARRRDPEGFVHVYEGVPESDDDAAIIKLS 187

Query: 301 YIEEAMSREAIDD--LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
           +IE A+    + D        +G D+A  G DK   V+R G++I    +W AK
Sbjct: 188 WIEAAVDAHKVLDFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAK 240


>gi|170752064|ref|YP_001758324.1| PBSX family phage terminase large subunit [Methylobacterium
           radiotolerans JCM 2831]
 gi|170658586|gb|ACB27641.1| phage terminase, large subunit, PBSX family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 440

 Score = 92.7 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 76/302 (25%), Gaps = 32/302 (10%)

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
                      P  +K A   GRG  K+      ++ L + R  + ++C    +  +  +
Sbjct: 4   EFPEKLDFLFEPHRYKIAY-GGRGGAKSWGFGRALVILGAQRK-LRVLCAREFQNSIAES 61

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
             A +++ + +L   H ++ Q   +  +     + +                    R + 
Sbjct: 62  AHALLAQQIDLLGLSHLYDTQEKRILGTNGTEFIFK------------------GLRHNV 103

Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-N 242
                       + +EA          ++    +      WI   NT       Y  F  
Sbjct: 104 ASVKSTEGVDVCWVEEARTVSKTSWDVLIPTIRKEGSE-IWISF-NTELAEDETYKRFVA 161

Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302
            P    +  +I             +  +     D         G            +  +
Sbjct: 162 KPPTGARVVKIGWEDNPWFPDVLRQEALDLKARDPIAYETVWGGNCKAVLDGAIYANEIL 221

Query: 303 ---EEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
                    +   D   P+    D+     DKT + F +        ++      E    
Sbjct: 222 AATTAKRFTKVPYDPTKPVHTFWDLGR--ADKTSIWFAQIVGF----EFRLIDFYENRGH 275

Query: 360 GC 361
             
Sbjct: 276 AL 277


>gi|121591052|gb|ABH10668.2| terminase subunit [Klebsiella phage KPP95]
          Length = 302

 Score = 92.7 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/282 (12%), Positives = 80/282 (28%), Gaps = 47/282 (16%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q + +E +             T    +    R +GKTT+ A  +   +      ++ 
Sbjct: 44  RDYQRDMLEIMAA--------KRMTCCNLS----RQLGKTTVVAIFLAHFVCFNKDKAVG 91

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +A+  +     L     + + +LP                   E  + S+ +D+     
Sbjct: 92  ILAHKGSMSAEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSI- 138

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSN 229
                      +           ++ DE +  P+      +I    +    ++  I+ + 
Sbjct: 139 ------GAYASSPDAVRGNSFAMIYIDECAFIPNFIDAWLAIQPVISSGRRSK--IIITT 190

Query: 230 TRRLNGWFYDIFNIPLED----------WKRYQID-TRTVEGIDSGFHEGIISRYGLDSD 278
           T      FYDI+   +E           W   +       +  D G+   + +      +
Sbjct: 191 TPSGLNHFYDIWTAAVEGKSGFTPYTAIWNSVKERLYNDEDMFDDGWQWSLQTISASSLE 250

Query: 279 VARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIM 320
             + E   +F        I    +      E   D +    +
Sbjct: 251 QFKQEHCAEFHGTS-GTLISGMKLANMDWIEVTPDSHGFYNL 291


>gi|18496890|ref|NP_569740.1| putative terminase gp4 [Mycobacterium phage TM4]
 gi|4336041|gb|AAD17572.1| putative terminase gp4 [Mycobacterium phage TM4]
          Length = 474

 Score = 92.3 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/354 (11%), Positives = 89/354 (25%), Gaps = 71/354 (20%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
               WQ +  + +      +       +F  +I   R  GKT L   ++  L    P  +
Sbjct: 39  GFDLWQDDLGKLICA--KRDDGLYAADMFAMSI--PRQTGKTYLLGALVFALCIKTPNTT 94

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           +I  A+       T  +                 Q L+         L   +        
Sbjct: 95  VIWTAHRTRTAAETFRSM----------------QGLAKRDKIAPHILNVHTGNGKEAVL 138

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                       +   G        +  DEA    +     ++   T   PN   ++   
Sbjct: 139 FKNGSRILFGARERGFGRGFAGVDVLIFDEAQILTENAMDDMVPA-TNAAPNPLILLAGT 197

Query: 230 TRRLNGW------------------------FYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265
             +                              D    P +  +  +++        +  
Sbjct: 198 PPKPTDPGEVFTVMRLDALAGDVDDVGYVEISADEDADPDDRSQWRKMNPSYPHRTSARA 257

Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA----IDDLYAPLIMG 321
              +    G +S   + E +G +P+      +    ++     +      +D  AP  + 
Sbjct: 258 ILRMRKALGDES--FKREAMGIWPKVS----VHQPVVKSGRWHDLFDLGPEDGEAPNALA 311

Query: 322 CDIAGE-----GGDKTVVVFRRGNIIEHIFDWSAKLI-------QETNQEGCPV 363
            D++       G     ++   G  +E +  W+            E      PV
Sbjct: 312 VDMSHGLAISVGACW--LMDDDGRHVEEV--WAGTDTAAAVDWIAERAGRRIPV 361


>gi|240850562|ref|YP_002971962.1| phage terminase, large subunit [Bartonella grahamii as4aup]
 gi|240267685|gb|ACS51273.1| phage terminase, large subunit [Bartonella grahamii as4aup]
          Length = 441

 Score = 91.9 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 74/268 (27%), Gaps = 30/268 (11%)

Query: 84  AGRGIGKTTLNAWMMLW--LISTRPG--MSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            GRG GKT   A M         R G   +I+C    +  L  +   E+ + +       
Sbjct: 27  GGRGSGKTRSFALMAALKGYQFGREGISGTILCARQFQNSLAESSLEEIKRAIE------ 80

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                 L  +     + +      I           +S    +          +  + DE
Sbjct: 81  --AHDFLKDYYKVGESSIKSIDGRI--------AFQFSGLDRNIASIKSMGRILLCWVDE 130

Query: 200 ASGTPDIINKSILGFFTELN---PNRFWIMTSNTRRLNGWFYDIFNIPLED-WKRYQIDT 255
           A    +   ++++    E         W+   N  R N      F     +  KR +I+ 
Sbjct: 131 AEPVTETAWQTLIPTLREEGEGWRAELWVTW-NPLRENAPVEKRFRFSDNEAIKRVEINW 189

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI---EEAMSREAID 312
                     +E  +       +  +    G + +     +     +   +E        
Sbjct: 190 SDNPKFPKILNEARLDDLRNRPETYKHIWEGDYLKAVQGAYYQKEMLAAEQEGRIGRVAR 249

Query: 313 DLYAPLIMGCDIAGEG--GDKTVVVFRR 338
           D    +    DI G G   D T +   +
Sbjct: 250 DPLMQIRAFWDIGGTGAKADATAIWIAQ 277


>gi|291334416|gb|ADD94071.1| hypothetical protein GobsU_33659 [uncultured phage
           MedDCM-OCT-S04-C1035]
 gi|291334470|gb|ADD94124.1| hypothetical protein GobsU_33659 [uncultured phage
           MedDCM-OCT-S04-C1161]
          Length = 223

 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 67/243 (27%), Gaps = 33/243 (13%)

Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
           +S         IA +  Q K+  W  + ++ + +P+                  +  E  
Sbjct: 1   MSKLKNPRFAYIAPTFKQAKSIAWDYMKQFTAKIPN-----------------TKFNETE 43

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNP 220
           + +D           +    +   G    +      DE +     +  + I    +  + 
Sbjct: 44  LRVD----LPNGSRITLLGAENSDGLRGIYLDGCVIDEYANIDGKLFAEIIRPALS--DR 97

Query: 221 NRFWIMTSNTRRLNGWFYDIFNIP--LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278
             + +       +N  FYD++      EDW  Y+      + +D    E      G    
Sbjct: 98  KGYCVFIGTPAGMNNNFYDLYQHANGAEDWFNYKAKASDTKIVDPEELEKAKEVMGEKK- 156

Query: 279 VARIEILGQFPQQEVNNFIPHNYI---EEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335
               E    +                 ++        D   P+    D+     D + ++
Sbjct: 157 -YLQEFECDWIANIEGAIYGEEIAKIEDKNQIARVPYDPTLPVSTAWDLGV--ADHSSII 213

Query: 336 FRR 338
           F +
Sbjct: 214 FFQ 216


>gi|87201130|ref|YP_498387.1| hypothetical protein Saro_3118 [Novosphingobium aromaticivorans DSM
           12444]
 gi|87136811|gb|ABD27553.1| protein of unknown function DUF264 [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 440

 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 85/277 (30%), Gaps = 31/277 (11%)

Query: 68  SNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126
                + P+ ++   + AGRG GKT L A  +  +    P   I  +  S  + ++ +  
Sbjct: 42  RQSQQAPPSDWRVWLVMAGRGFGKTRLGAEWVRKIAEEDPEARIALVGASLHEARSVMVE 101

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
             S  LS                 + W   + E S+             YS   P++   
Sbjct: 102 GESGLLS---------------IDAPWRRPVFESSVRRLVWPNGAQAFLYSAGEPES--- 143

Query: 187 PHNTHGMAVFNDEASGTPDI------INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
                    + DE +   +          ++L         R       T R       I
Sbjct: 144 LRGPQHSHAWCDEIAKWDNGSNRAMATWDNLLMGLRLGRDPRLVAT--TTPRPVPLVARI 201

Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
            +   +            + +   F E +   +G  + + R E+LG+  +  V       
Sbjct: 202 MDEGDDVVVTRGSTFENQDNLPRRFVEAMRRTFGGTT-LGRQELLGEMIEDLVGALWSRA 260

Query: 301 YIEEAMSREAIDDLYAPLIMGCD-IAGEGGDKTVVVF 336
            IE A  RE        +++G D  A   GD   ++ 
Sbjct: 261 LIENA--REDAAPAMTRVVVGVDPPASAHGDACGIIV 295


>gi|292905266|ref|YP_003541137.1| hypothetical protein Ava_D0014 [Anabaena variabilis ATCC 29413]
 gi|75705004|gb|ABA24679.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413]
          Length = 484

 Score = 91.2 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/353 (14%), Positives = 89/353 (25%), Gaps = 49/353 (13%)

Query: 26  LSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAG 85
             F  F                      W  E +  +       V          +I A 
Sbjct: 34  NDFAYFAEYV-------TGKTAAEHHLEWITELVTGISSQTLELVAGD-----NLSILAP 81

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM----------L 135
           RG  K+T  A  + W+I   P + II ++ SE+   +     + + +            L
Sbjct: 82  RGSAKSTWIAMWVAWVIGHNPSIQIIYVSYSESVALSRS-RIIKRIIESPKYREVFPNVL 140

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
           P + W +              L        +          S+      +   +      
Sbjct: 141 PGKRWSDTDWEIRKDFAGVDSLDSDYTFYATGITGSITSRRSDLVVYDDIIKSSESIENP 200

Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ--- 252
              E        ++ I                    R +      F       +  Q   
Sbjct: 201 EVRE--KITTNYSEVIRPTLKPGGRQVN---IGTRFRADDIHCTDFIPAKGWKQIVQQAI 255

Query: 253 ---IDTRTVEGIDSGFHEGIISRYGLDSDV-ARIEILGQFPQQEVNNFIPHNYIEEAMSR 308
               D + V      F    +     DS V    +   +  +    +  P  +I+     
Sbjct: 256 VDDDDGKEVSYWPERFTLEELQALREDSPVAFSFQYQNRVMRSSETSIDPL-WIKHG--- 311

Query: 309 EAIDDLYAPLIMGCDIA---GEGGDKTVVVF--RRGNIIEHIF----DWSAKL 352
               D +  L +G D++    E  D TV V   R GN    +      WS  +
Sbjct: 312 -EFPDHFDSLCIGGDLSASLRERADYTVFVLGGRVGNKFYILDIRRGRWSGNI 363


>gi|109290130|ref|YP_656379.1| gp17 terminase subunit [Aeromonas phage 25]
 gi|104345803|gb|ABF72703.1| gp17 terminase subunit [Aeromonas phage 25]
          Length = 612

 Score = 91.2 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/376 (11%), Positives = 92/376 (24%), Gaps = 76/376 (20%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + R     +  ++ L E      C      F   +         +        +Q + + 
Sbjct: 83  LKRANIKIKWTKEMLAERK---RCKEDIVYFAENYCCIEHIDYGIIRVQ-LRDYQKDMLR 138

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +  +     N S            R +GKTT+ A  +   +      ++  +A+  +  
Sbjct: 139 IMAGNRLMAANLS------------RQLGKTTVVAIFLAHFVCFNSAKNVGILAHKASMS 186

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
              L     + L +LP                   E  + S+ + +        +     
Sbjct: 187 AEVLHR-TKQALELLPD-----------FLQPGIVEWNKGSITLGNGCAIGAFSS----- 229

Query: 181 PDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
             +           ++ DE +  P  +    +I    +        I+ + T      +Y
Sbjct: 230 --SPDAVRGNSFALIYIDEVAFIPNFNDAWLAIQPVISSG--RHSKILMTTTPNGLNHWY 285

Query: 239 DIFNIP----------LEDWKRYQIDTRTVEGIDSG-----------FHEGIISRYGLDS 277
           DI+                +  Y     +V+                    I+ +     
Sbjct: 286 DIWTAAITPNSDGSGSKSGFVPYTATWSSVKERMYSDGSKTDGAIHILTTDILGQPRQSP 345

Query: 278 ----DVARIEILGQFPQQEVNNFIPHNYIEEAMSREA----------IDDLYAPLIMGCD 323
                  + E    F Q      I    + +   +E                   I   D
Sbjct: 346 VLALRAFQQEHNTAF-QGTSGTLINGFKLSKMTWKEVPASDNFTMFKEPIEGHKYIATLD 404

Query: 324 IA-GEGGDKTVVVFRR 338
            A G G D   +    
Sbjct: 405 SAEGRGQDYHAMHIYD 420


>gi|294338167|emb|CBJ94203.1| Putative phage DNA packaging protein (terminase) [Campylobacter
           phage CPt10]
          Length = 731

 Score = 91.2 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/307 (14%), Positives = 87/307 (28%), Gaps = 53/307 (17%)

Query: 63  DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN 122
             HC+      +   +   + +     K+T  +  +  L   +  ++I  +A S    + 
Sbjct: 259 YDHCYDLTLEHHHLYYTNGVLS-HNSSKSTTTSVKLAHLYCFKKDINIGIVAYSGNSARE 317

Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182
            L       + +             +          + S+  ++    +T    S     
Sbjct: 318 FLDKTKKMLIGL------------PIWMQPGTVTWNKGSIECENNIKILTDVPSS----- 360

Query: 183 TFVGPHNTHGMAVFNDEASGTPDIINKSILGFF--TELNPNRFWIMTSNTRRLNGWFYDI 240
                  T    +  DE +                ++       ++  +T +    FYDI
Sbjct: 361 --DAFRGTSTNIIVVDECAYLDPAGWIDFTDGVLPSQAGLAFKKLVILSTPKGKNHFYDI 418

Query: 241 FNIPLE-------DWKRYQIDTRTVEGI--------DSGFHEGIISRYGLDSDVARIEIL 285
           +    +        + R+++D R V              F +  I   GL   V      
Sbjct: 419 WQGAGDTLETSINGFVRHRVDWRLVPRFKSDGTKYDPEEFKQQQIKTGGL--VVWNSAYE 476

Query: 286 GQF--------PQQEVNNFIPHNYIEEAMSRE------AIDDLYAPLIMGCDIAGEGGDK 331
            +F        P + ++ + P   IE    ++               +MG D A EG D 
Sbjct: 477 CKFEGSAMTLIPSEILDTYKPQEPIEVDNIKDSKILIYEEPIPGHKYVMGVDTAKEGADF 536

Query: 332 TVVVFRR 338
           T V    
Sbjct: 537 TGVQIFD 543


>gi|294337972|emb|CBJ93810.1| putative phage DNA packaging protein (terminase) [Campylobacter
           phage CP220]
          Length = 744

 Score = 91.2 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/307 (14%), Positives = 87/307 (28%), Gaps = 53/307 (17%)

Query: 63  DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN 122
             HC+      +   +   + +     K+T  +  +  L   +  ++I  +A S    + 
Sbjct: 259 YDHCYDLTLEHHHLYYTNGVLS-HNSSKSTTTSVKLAHLYCFKKDINIGIVAYSGNSARE 317

Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182
            L       + +             +          + S+  ++    +T    S     
Sbjct: 318 FLDKTKKMLIGL------------PIWMQPGTVTWNKGSIECENNIKILTDVPSS----- 360

Query: 183 TFVGPHNTHGMAVFNDEASGTPDIINKSILGFF--TELNPNRFWIMTSNTRRLNGWFYDI 240
                  T    +  DE +                ++       ++  +T +    FYDI
Sbjct: 361 --DAFRGTSTNIIVVDECAYLDPAGWIDFTDGVLPSQAGLAFKKLVILSTPKGKNHFYDI 418

Query: 241 FNIPLE-------DWKRYQIDTRTVEGI--------DSGFHEGIISRYGLDSDVARIEIL 285
           +    +        + R+++D R V              F +  I   GL   V      
Sbjct: 419 WQGAGDTLETSINGFVRHRVDWRLVPRFKSDGTKYDPEEFKQQQIKTGGL--VVWNSAYE 476

Query: 286 GQF--------PQQEVNNFIPHNYIEEAMSRE------AIDDLYAPLIMGCDIAGEGGDK 331
            +F        P + ++ + P   IE    ++               +MG D A EG D 
Sbjct: 477 CKFEGSAMTLIPSEILDTYKPQEPIEVDNIKDSKILIYEEPIPGHKYVMGVDTAKEGADF 536

Query: 332 TVVVFRR 338
           T V    
Sbjct: 537 TGVQIFD 543


>gi|49475696|ref|YP_033737.1| Phage related protein [Bartonella henselae str. Houston-1]
 gi|49238503|emb|CAF27734.1| Phage related protein [Bartonella henselae str. Houston-1]
          Length = 441

 Score = 91.2 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 78/299 (26%), Gaps = 37/299 (12%)

Query: 79  KCAISA---GRGIGKTTLNAWMMLW----LISTRPGMSIICIANSETQLKNTLWAEVSKW 131
           K A+ A   GRG GKT   A M               +I+C    +  L  +   E+ + 
Sbjct: 19  KAAVRAAWGGRGSGKTRSFALMAALKGYQFGMGGISGTILCARQFQNSLAESSLEEIKRA 78

Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
           +                    +Y         ID +        +S    +         
Sbjct: 79  IE------------GHDFLKDYYKVGESSIKSIDGR----IAFQFSGLDRNIASIKSMGR 122

Query: 192 GMAVFNDEASGTPDIINKSILGFFTELN---PNRFWIMTSNTRRLNGWFYDIFNIPLED- 247
            +  + DEA    +   ++++    E         W+   N  R N      F     + 
Sbjct: 123 ILLCWVDEAEPVTETAWQTLIPTLREEGEGWRAELWVTW-NPLRDNAPVERRFRFSNNEA 181

Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI---EE 304
            KR +I+           +E  +       +  +    G +       +     +   +E
Sbjct: 182 IKRVEINWSDNPKFPKILNEARLDDLKNRPETYKHIWEGAYLTAVQGAYYQKEMLAAEQE 241

Query: 305 AMSREAIDDLYAPLIMGCDIAGEG--GDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC 361
                   D    +    DI G G   D T +   +        +       E   +  
Sbjct: 242 GRIGRVARDPLMQMRAFWDIGGTGAKADATAIWIAQ----FVGREIRVLDYYEAQGQPL 296


>gi|80159854|ref|YP_398598.1| conserved phage-related protein [Clostridium phage c-st]
 gi|78675444|dbj|BAE47866.1| conserved phage-related protein [Clostridium phage c-st]
          Length = 580

 Score = 91.2 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/388 (12%), Positives = 100/388 (25%), Gaps = 66/388 (17%)

Query: 6   STDQKLEQE--LHEMLMHAECVLSFKNFVMRF--FPWGIKGKPLEHFSQPHRWQLEFMEA 61
           S D   +++  LH              +      F   + G  L  F      Q   + A
Sbjct: 27  SYDPIKDKKDGLHTEEWEKYI----SYYRKYIDKFCIEVLGLKLYLF------QRLILRA 76

Query: 62  VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121
           +  + +              +   RG+GK+ L+A   +       G+     +    Q +
Sbjct: 77  MARNQY------------VMLICCRGLGKSWLSAVFFVASCILYKGLKCGIASGQGQQAR 124

Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
           N +  +V   L+  P                      +  +   +               
Sbjct: 125 NVIIQKVKGELAKNP-------SIAREIVFPIKTGADDCVVNFRNGSEIRAIVLGR---- 173

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT----------ELNPNRFWIMTSNT- 230
           +   G  +     +  DE     D +  +IL   T                  I  S+  
Sbjct: 174 NQGDGARSWRFHYLLVDECRLVSDKVINTILIPMTKTKRAVAIHHNKREKGKVIFISSAY 233

Query: 231 ------RRLNGWFYDIFNIPLEDWKRYQIDTR---TVEGIDSGFHEGIISRYGLDSDVAR 281
                  +   +F D  +    ++    +D R        D    +   ++  +  +  +
Sbjct: 234 LKTSDLYKRFKYFCDKMSSGANNYFVCSLDYRVGIEAGIFDQDDIDEERNKPDMTIEEFQ 293

Query: 282 IEILGQFPQQEVNNFIPHNYIEEAM-----SREAIDDLYAPLIMGCDIAGEG---GDKTV 333
            E  G F      ++ P+     A               +  I+  D+A  G    D   
Sbjct: 294 YEYEGIFVGSSGESYFPYETTTPARVLGRGEITQPKKSKSEYIITHDVAISGASDSDNAC 353

Query: 334 VVFRRGNIIEHIFDWSAKLIQETNQEGC 361
               +    +    +  +++      G 
Sbjct: 354 THVIK-LKPKPNGTYVKEVVYTKTHNGI 380


>gi|163868206|ref|YP_001609414.1| phage related protein [Bartonella tribocorum CIP 105476]
 gi|163869068|ref|YP_001610302.1| hypothetical protein Btr_2286 [Bartonella tribocorum CIP 105476]
 gi|161017861|emb|CAK01419.1| phage related protein [Bartonella tribocorum CIP 105476]
 gi|161018749|emb|CAK02307.1| phage-related protein [Bartonella tribocorum CIP 105476]
          Length = 442

 Score = 90.8 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 75/291 (25%), Gaps = 34/291 (11%)

Query: 84  AGRGIGKTTLNAWMMLW----LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            GRG GKT   A M               +I+C    +  L  +   E+ + +       
Sbjct: 27  GGRGSGKTRSFALMAALKGYQFGMQGISGTILCARQFQNSLAESSLEEIKRAIE------ 80

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                 LS +     A +      I           +S    +          +  + DE
Sbjct: 81  --AHDFLSEYYKVGEASIKSNDGRI--------AFQFSGLDRNIASIKSMGRILLCWVDE 130

Query: 200 ASGTPDIINKSILGFFTELN---PNRFWIMTSNTRRLNGWFYDIFNIPLED-WKRYQIDT 255
           A    +   ++++    E         W+   N  R N      F     +  KR +I+ 
Sbjct: 131 AEPVTETAWQTLIPTLREEGDGWRAELWVTW-NPLRDNAPVESRFRFSDNEAIKRVEINW 189

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI---EEAMSREAID 312
                     +E  +       +  +    G +       +     +   +E        
Sbjct: 190 SDNPKFPKILNEARLDDLRNRPETYKHIWEGAYLTAVQGAYYQKEMLAAEQEGRIGRVAR 249

Query: 313 DLYAPLIMGCDIAGEG--GDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC 361
           D    +    DI G G   D T +   +        +       E   +  
Sbjct: 250 DPLMQIRAFWDIGGTGAKADATAIWIAQ----FVGREIRVLDYYEAQGQPL 296


>gi|161525001|ref|YP_001580013.1| hypothetical protein Bmul_1828 [Burkholderia multivorans ATCC
           17616]
 gi|189350256|ref|YP_001945884.1| bacteriophage TerL protein [Burkholderia multivorans ATCC 17616]
 gi|160342430|gb|ABX15516.1| conserved hypothetical protein [Burkholderia multivorans ATCC
           17616]
 gi|189334278|dbj|BAG43348.1| bacteriophage TerL protein [Burkholderia multivorans ATCC 17616]
          Length = 531

 Score = 90.8 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 76/279 (27%), Gaps = 22/279 (7%)

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
           R +G + L   +   +     G++    +  E         E    +       W   + 
Sbjct: 101 RDMGMSWLTVGLADTICLFHEGVAAGFGSRKE---------EYVDKIGSPKSLFWKAREF 151

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
           L L P+ +       +     +       +         +G           DE++    
Sbjct: 152 LRLLPAEFRGSWDIGTHAPHMRIIFPDTGSVITGESGDGIG-RGDRASFYIVDESAFLER 210

Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265
                     T           S    +   F    +      K +    R     D  +
Sbjct: 211 PQLVDASLSATTNCRQD----ISTPNGMGNSFAQRRH--SGKVKVFTFHWRDDPRKDDAW 264

Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCD 323
           +        LD  V   EI   +        IP  +++ A+        +       G D
Sbjct: 265 Y--AKQCAELDPVVVAQEIDINYAASVEGVVIPSAWVQAAIGAHLKLGIEPSGTRRGGLD 322

Query: 324 IAGEGGDKTVVVFRRGNIIEHIFDWSAK--LIQETNQEG 360
           +A EG DK     R G ++  +  WS K   I ET ++ 
Sbjct: 323 VADEGKDKNAFAGRYGFLLNFLRSWSGKGGDIYETVEKT 361


>gi|221199508|ref|ZP_03572552.1| phage terminase, large subunit, pbsx family [Burkholderia
           multivorans CGD2M]
 gi|221205590|ref|ZP_03578605.1| phage terminase, large subunit, pbsx family [Burkholderia
           multivorans CGD2]
 gi|221174428|gb|EEE06860.1| phage terminase, large subunit, pbsx family [Burkholderia
           multivorans CGD2]
 gi|221180793|gb|EEE13196.1| phage terminase, large subunit, pbsx family [Burkholderia
           multivorans CGD2M]
          Length = 425

 Score = 90.8 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/295 (12%), Positives = 80/295 (27%), Gaps = 34/295 (11%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
             P     ++  GRG GKT   A  +L   + +P + ++C    +  +K +++A +   +
Sbjct: 11  FEPQWRFISVRGGRGSGKTVNFARALLIRATQKP-LRVLCTREVQDSIKESVYATLVSEM 69

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
             +     F++ S  + P    A                  R  S+   D          
Sbjct: 70  KKMGLESHFDVLSNEIRPKLGGA---------------FIFRGLSDMTADNVKSL--ADI 112

Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF--NIPLEDWKR 250
              + +EA    +   + +            W+   N      + Y              
Sbjct: 113 DIAWVEEAQTITENSFRKLTPSIRAPGSQ-IWLSW-NPELETDFIYQKVVIEGLPNCASL 170

Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE---EAMS 307
           + ++                   G D D+ R   LG            +   +   E   
Sbjct: 171 F-VNFDQNPWFPDELRLEEQDMKGKDPDMHRHVWLGMPLPAVAGAIYFNEISQMESEGRL 229

Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHI-FDWSAKLIQETNQEGC 361
                D      +  D+     D T        +++ +  ++      E  ++  
Sbjct: 230 LNIPIDDGLNTYIIMDLGF--NDFTSC-----PVVQQVGGEFRIVDFFENRRKPL 277


>gi|211731828|gb|ACJ10140.1| terminase [Bacteriophage APSE-6]
          Length = 469

 Score = 90.4 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/288 (12%), Positives = 77/288 (26%), Gaps = 35/288 (12%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG  KT   A + L   S       +C+      +++++ A +   +  L  +  F +
Sbjct: 12  GGRGGMKTVSFAKIALITASMHK-RRFLCLREFMNSIEDSVHAVLQAEVETLGLQVRFRV 70

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
            +  +                 +       +        +    H       + +EA   
Sbjct: 71  LNSCI--------------EGINDSIFKYGQLAR--NIASIKSKH--DFDVAWVEEAETV 112

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL------------EDWKRY 251
            +    +++    +      +    N    +G  Y  F  P             +D    
Sbjct: 113 SEKSLDTLIPTIRKPGSELRFSF--NPAEEDGAVYKRFVKPYKAIIDKQGYYEDDDLYVG 170

Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311
            +       +              +    R    G+      +  I   ++  A+     
Sbjct: 171 NVSYLDNPWLPVELKNDAQKMKRENYKKWRHVYGGECDANYEDALIQPEWVGAAIDAHIK 230

Query: 312 D--DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETN 357
                    ++  D AG G D+  +  R G +IE    W    + +  
Sbjct: 231 LGFKPSGIRVVTFDPAGSGQDEKALSKRYGVLIEDCVSWLEGDVADAT 278


>gi|310815629|ref|YP_003963593.1| Putative large terminase [Ketogulonicigenium vulgare Y25]
 gi|308754364|gb|ADO42293.1| Putative large terminase [Ketogulonicigenium vulgare Y25]
          Length = 427

 Score = 90.4 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/294 (12%), Positives = 75/294 (25%), Gaps = 36/294 (12%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAI-SAGRGIGKTTLNAWMMLWLIST-RPG----- 107
           Q+  +  +               ++  +   GRG GKT   A  +  ++   RP      
Sbjct: 8   QIAALPWLFEFWALPHQLPPSGDWRTWVIMGGRGAGKTRAGAEWVRSMVEGPRPDTPGRA 67

Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
             +  IA +  Q +  +    S  ++  P     E  +                      
Sbjct: 68  KRVGLIAQTMDQAREVMVFGDSGLMACCPPARRPEWIAGRAMLR---------------- 111

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWI 225
                                     A++ DE +           ++      +  R  +
Sbjct: 112 --WPNGAEARLFSAHDPEALRGPQFDAIWADEVAKWRLAQEAWDMLVMGLRLGDDPRACL 169

Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
               T    G F             +         +  GF    +      S + R E+ 
Sbjct: 170 ---TTTPRGGPFLRKLLAQSGTVMTHAPTRANRANLAPGFV-AAVEAMFEGSHLGRQELD 225

Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVVVF 336
           G    +      P + ++ A+ R+A       +++  D       G D   ++ 
Sbjct: 226 GLLVDEAEGTLWPQHLLDAALQRQAPP--LDRIVVAVDPPVTGHAGSDACGIIV 277


>gi|319405798|emb|CBI79424.1| phage related protein [Bartonella sp. AR 15-3]
          Length = 441

 Score = 90.4 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 80/299 (26%), Gaps = 37/299 (12%)

Query: 79  KCAISA---GRGIGKTTLNAWMMLW----LISTRPGMSIICIANSETQLKNTLWAEVSKW 131
           + A+ A   GRG GKT   A M               +I+C    +  L  +   E+ + 
Sbjct: 19  RAAVRAAWGGRGSGKTRSFALMAALKGYQFGMGGISGTILCARQFQNSLAESSLEEIKRA 78

Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
           +             L  +     + +  +   I           +S    +         
Sbjct: 79  VE--------AHDFLKDYYKVGESTIKSKDGRI--------SFQFSGLDRNIASIKSMGR 122

Query: 192 GMAVFNDEASGTPDIINKSILGFFTELN---PNRFWIMTSNTRRLNGWFYDIFNIPLED- 247
            +  + DEA    +   ++++    E         W+   N  R N      F     + 
Sbjct: 123 ILLCWVDEAEPVTETAWQTLIPTLREEGDGWRAELWVTW-NPLRENAPVERRFRFSENEG 181

Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI---EE 304
            K  +I+           +E  +      ++  +    G + +     +     +   +E
Sbjct: 182 IKGVEINWSDNPKFPQILNEARLDDLKNRAESYQHIWEGGYLKAVQGAYFQKEMLAAEQE 241

Query: 305 AMSREAIDDLYAPLIMGCDIAGEG--GDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC 361
                   D    L    DI G G   D T +   +        +       E   +  
Sbjct: 242 GRIGRVARDPLMQLRAFWDIGGTGAKADATAIWIAQ----FVGREIRVLDYYEAQGQPL 296


>gi|332091158|gb|EGI96248.1| phage terminase large subunit [Shigella dysenteriae 155-74]
          Length = 346

 Score = 90.4 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 58/161 (36%), Gaps = 5/161 (3%)

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
            ++ +EA    +   K +     +     ++I   N   +  + +  F   P E     +
Sbjct: 1   MLWLEEAHALTEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEGTLIRK 58

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
           I+      +     + I +    D D  +    G     +    I  ++IE A+      
Sbjct: 59  INYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAAVDAHKTL 118

Query: 313 --DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
             +      +G D+A  G DK   V+R G+++    +W AK
Sbjct: 119 NFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAK 159


>gi|240850378|ref|YP_002971772.1| phage terminase, large subunit [Bartonella grahamii as4aup]
 gi|240267501|gb|ACS51089.1| phage terminase, large subunit [Bartonella grahamii as4aup]
          Length = 444

 Score = 90.0 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 73/268 (27%), Gaps = 30/268 (11%)

Query: 84  AGRGIGKTTLNAWMMLW--LISTRPG--MSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            GRG GKT   A M         R G   +I+C    +  L  +   E+ + +       
Sbjct: 29  GGRGSGKTRSFALMAALKGYQFGREGISGTILCARQFQNSLAESSLEEIKRAIE------ 82

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                 L  +     + +      I           +S    +          +  + DE
Sbjct: 83  --AHDFLKDYYKVGESSIKSIDGRI--------AFQFSGLDRNIASIKSMGRILLCWVDE 132

Query: 200 ASGTPDIINKSILGFFTELN---PNRFWIMTSNTRRLNGWFYDIFNIPLED-WKRYQIDT 255
           A    +   ++++    E         W+   N  R N      F     +  KR +I+ 
Sbjct: 133 AEPVTETAWQTLIPTLREEGEGWRAELWVTW-NPLRENAPVEKRFRFSDNEAIKRVEINW 191

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI---EEAMSREAID 312
                     +E  +       +  +    G +       +     +   +E        
Sbjct: 192 SDNPKFPKILNEARLDDLRNRPETYKHIWEGAYLTAVQGAYYQKEMLAAEQEGRIGRVAR 251

Query: 313 DLYAPLIMGCDIAGEG--GDKTVVVFRR 338
           D    +    DI G G   D T +   +
Sbjct: 252 DPLMQIRAFWDIGGTGAKADATAIWIAQ 279


>gi|83950455|ref|ZP_00959188.1| Putative large terminase [Roseovarius nubinhibens ISM]
 gi|83838354|gb|EAP77650.1| Putative large terminase [Roseovarius nubinhibens ISM]
          Length = 434

 Score = 90.0 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 80/296 (27%), Gaps = 36/296 (12%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134
           AI  GRG GKT   A  +   +             I  +  +  Q++  +    S  L+ 
Sbjct: 41  AIMGGRGAGKTRAGAEWVRAAVEGATPGAPGRCRRIALVGETVDQVREVMIFGESGILAC 100

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
            P     E Q+                               +                 
Sbjct: 101 SPPDRRPEWQASRRRL------------------VWPNGAEAAVFSAHDPEALRGPQFDG 142

Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
            + DE +           +       +  +  +    T R  G   D+   P       Q
Sbjct: 143 AWLDEMAKWKKARATWDMLQFALRLGDDPQICVT--TTPRNVGVLKDVLAAPS--TVVTQ 198

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
             T       +      +    + + + R E+ G   ++          ++ A  R +  
Sbjct: 199 APTEANRAHLAESFLAEVRARYVGTRLGRQELDGILLEEAEGALWSLAALDAA--RVSKL 256

Query: 313 DLYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC-PVG 364
              + +++  D       G D+  ++    +    + +W A ++ + +  G  P G
Sbjct: 257 PELSRIVVAVDPPVTGHAGSDECGIIVAGVDQSGPVQEWRAYVLADRSVSGMSPTG 312


>gi|218296139|ref|ZP_03496908.1| protein of unknown function DUF264 [Thermus aquaticus Y51MC23]
 gi|218243516|gb|EED10045.1| protein of unknown function DUF264 [Thermus aquaticus Y51MC23]
          Length = 426

 Score = 90.0 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 48/305 (15%), Positives = 91/305 (29%), Gaps = 40/305 (13%)

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124
           H            F   +  GR  GKTTL   +     + R G ++   A   + L    
Sbjct: 13  HPAQREVVGAAKRFNL-LRCGRRWGKTTLLLRLAAQAAAER-GQAVGWFAPIYSLLAPA- 69

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
           + E+ +       R     Q +  + SG   E                            
Sbjct: 70  YEELLRRTRPGVVRAAERPQPVIRYVSGGRIEFWSLDSKDVPG----------------- 112

Query: 185 VGPHNTHGMAVFNDEASGTP---DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
                        DEA+  P    +  ++IL    +   + +    ++T +    FY+++
Sbjct: 113 ---RGRAYDLAIIDEAAFAPSLARVWEEAILPTLLDRLGSAW---IASTPKGRNAFYELW 166

Query: 242 NIPLED--WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299
           N+ L+D  W  +   +     +       + +    +    R EIL ++           
Sbjct: 167 NLTLDDPAWAHFHEPSHRNPFLSQEELARMAATMTRE--RYRQEILAEWVD-AEGRVFSE 223

Query: 300 NYIEEAMSREAIDD--LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEH---IFDWSAKLIQ 354
           + +E A+  +  +D         G D+A    D T V   R         +  W      
Sbjct: 224 DALEAALLLQGPEDPRPGERYAAGVDLARS-QDYTAVAVLRLGAQLELVRVERWRGLSYT 282

Query: 355 ETNQE 359
            T ++
Sbjct: 283 LTARK 287


>gi|163792602|ref|ZP_02186579.1| hypothetical protein BAL199_17183 [alpha proteobacterium BAL199]
 gi|159182307|gb|EDP66816.1| hypothetical protein BAL199_17183 [alpha proteobacterium BAL199]
          Length = 422

 Score = 90.0 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 79/274 (28%), Gaps = 27/274 (9%)

Query: 68  SNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126
                     ++   I AGRG GKT   A  +  L  +     I  +A +    ++ +  
Sbjct: 30  RPKQLPPAGDWRVWLILAGRGFGKTRTGAEWVRGLAESGRARRIALVAETAADARDVMIE 89

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
             S  L+        + +      +                         +    D    
Sbjct: 90  GESGLLACCAPWGRPKYEPSKRRVT------------------WPNGAIATSFSADDPDQ 131

Query: 187 PHNTHGMAVFNDEASGTP-DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL 245
                  A + DE +    +    +++         R   + + T +   W   +   P 
Sbjct: 132 LRGPQFDAAWADEIAKWRYEAAWDNLMLGLRLGADPR--CVATTTPKPRAWLARLMADP- 188

Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA 305
                          +  GF + I++RY     + R EI G+F  +          IE A
Sbjct: 189 GTVVTRGATRENAGNLAPGFLDQILARYAGT-RLGRQEIDGEFLTEIPGALWTRTLIEGA 247

Query: 306 MSREAIDDLYAPLIMGCDIAGEGG---DKTVVVF 336
            +        A +I+  D A   G   D+T +V 
Sbjct: 248 RALPGAVPGLARIIVAVDPAVTSGSDSDETGIVV 281


>gi|304360765|ref|YP_003856886.1| gp8 [Mycobacterium phage Angelica]
 gi|302858349|gb|ADL71097.1| gp8 [Mycobacterium phage Angelica]
          Length = 473

 Score = 89.6 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 42/351 (11%), Positives = 84/351 (23%), Gaps = 68/351 (19%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +WQ +  + V      +       +F  +I   R  GKT     ++       PG ++I
Sbjct: 43  DQWQDDLGKLVCA--KRSDGLYAADMFAMSI--PRQTGKTYFLGAIVFAFCKMNPGTTVI 98

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A+       T  +                 Q+L+         L   +          
Sbjct: 99  WTAHRTRTAAETFKSM----------------QALAKREQIAPHILNVHTGNGKEAVLFT 142

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
                     +   G        +  DEA    +     ++   T  +PN   +      
Sbjct: 143 NGSRILFGAREKGFGRGFAKVDVLIFDEAQILSENAMDDMIPA-TNASPNGLILFAGTPP 201

Query: 232 RLNGW------------------------FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267
           +                              D  + P E+    +++        +    
Sbjct: 202 KPTDPGEVFTNLRMDALNGESDDVAYVEISADENDDPDEESTWRKMNPSYPHRTSARAIR 261

Query: 268 GIISRYGLDSDVARIEILGQFPQ-QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAG 326
            +      DS   R E +G + +       I      +       +    P  +G D++ 
Sbjct: 262 RMRKALSWDS--FRREAMGIWDKISVHAQVIKAGLWRDLADPLGPEPGAKPASLGVDMSH 319

Query: 327 EGGDKTVV-----VFRRGN--IIEHIFDWSAKLIQ-------ETNQEGCPV 363
            G     +              +E +  W+            E      PV
Sbjct: 320 GG----AISIGGCWLIDDELRHVEQV--WAGTDTAAAVEFIVERAGRRIPV 364


>gi|329888629|ref|ZP_08267227.1| phage DNA packaging protein [Brevundimonas diminuta ATCC 11568]
 gi|328847185|gb|EGF96747.1| phage DNA packaging protein [Brevundimonas diminuta ATCC 11568]
          Length = 411

 Score = 89.2 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 74/277 (26%), Gaps = 21/277 (7%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
             E +               F+ A   GRG  K+       ++   T P + ++ +    
Sbjct: 2   IYEPIPAFRFLTAKPLGSYRFRAA-HGGRGSAKSWSVVDAAIFHTVTTPRLRVVFLREIM 60

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
             L  +    V K L                   G Y   +  +         +    + 
Sbjct: 61  ANLTESSLELVRKRLEHFG-------------LLGSYFREVNGTFQGLGGQKIMFIGLWK 107

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
             +P+               +EA          +L        +  W +  N R      
Sbjct: 108 GGKPEGIKSLEGAG--LTILEEAQEVRQASLDVLLPTILRTAISELWAIW-NPRLDTDPI 164

Query: 238 YDIFNIPL--EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN 295
              F  P+  +     +I+            E +   +  D   A    LG +       
Sbjct: 165 DVFFRGPVKPKGAIVRKINYDQNPHFPDALRELMELDFSKDKLRAAWIWLGGYMPSVQGA 224

Query: 296 FIPHNYIEEAMS--REAIDDLYAPLIMGCDIAGEGGD 330
                 ++EA    R A +  +  +++G D +G G D
Sbjct: 225 IWNREGLDEAWREGRHAPEGSWGRVVVGVDPSGGGDD 261


>gi|312126991|ref|YP_003991865.1| hypothetical protein Calhy_0759 [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777010|gb|ADQ06496.1| conserved hypothetical protein [Caldicellulosiruptor hydrothermalis
           108]
          Length = 444

 Score = 89.2 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 84/288 (29%), Gaps = 35/288 (12%)

Query: 79  KCAIS-AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
           K  I  AGR  GK+T+    ++   +T+        A S  Q K   + E  +      +
Sbjct: 48  KVQIKVAGRRFGKSTVTLIDVVHECATKTKQVWYITAPSIDQAK-IYFQEFEQ--RAANN 104

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
                +                  + + +    +   T         V         V  
Sbjct: 105 SLLDALVKDFKWSPFP-------EITLINGSKILGRSTSR-----NGVYLRGKGADGVAI 152

Query: 198 DEASGTPDIIN-KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED----WKRYQ 252
            EA+   D +    I     + N     +    T     + Y +F   L D    +K + 
Sbjct: 153 TEAAFIKDKVYHDVIRAMVLDRNG---VLRLETTPNGMNYVYKLFQEGLNDSTGYYKSFH 209

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY---IEEAMSRE 309
                 E +D    E I           RIE L +F + + +   P N    + +    +
Sbjct: 210 ATVYDNERLDREELERIRREIPE--LAWRIEYLAEFVE-DDSFIFPWNLLCEVFDDYELK 266

Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVF----RRGNIIEHIFDWSAKLI 353
                     +G D+A    D TV++     R    I     +  +L 
Sbjct: 267 KEPQNGHRYSIGVDLAKY-QDYTVIIVLDITREPYQIVEYHRYQGRLY 313


>gi|315655961|ref|ZP_07908859.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
 gi|315490025|gb|EFU79652.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
          Length = 460

 Score = 89.2 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/319 (13%), Positives = 88/319 (27%), Gaps = 43/319 (13%)

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124
           H  ++ +       +  +  GRG GKT   A ++       PG  I  +A  E+ +++  
Sbjct: 43  HARASQHPPTGAWTEWLLMTGRGWGKTRTAAELVRDWA-KNPGTQIAVVAKKESLVRSIC 101

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
           +             H       +   +   +      +            T      +  
Sbjct: 102 FE-----HKTSGLLHVIPKSDQARFNASGGSGRFFLQLK--------NGSTIYGFGAEVP 148

Query: 185 VGPHNTHGMAVFNDEASGT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
                      + DE +         +   +     E       ++ S T +      D+
Sbjct: 149 DNLRGFAFDKAWFDEFAAWNKQTAQEVYDMMWYDLRE--SPSPQMVISTTPKPLKHVRDL 206

Query: 241 FNIPLEDWKRYQIDTRTV-EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299
            + P       +  T+     + +   E +   YG    + R E+ G+  +         
Sbjct: 207 VSKP--GVVITRGHTKDNLPNLSAIALEKLERDYGKT-RLGRQELAGELIESIEGALWDV 263

Query: 300 NYIEEAMSREAIDDLYAPLIMGCDIAG---EGGDKTVV---------------VFRRGNI 341
              ++ + R         +++G D A    EG D T                     G I
Sbjct: 264 TMFQDPVFRPDTMPPLEDIVVGVDPAVRSSEGADMTAFTVAARAEDAPGMFPDHLNHGYI 323

Query: 342 IEHI-FDWSAKLIQETNQE 359
           +E I   ++ +       E
Sbjct: 324 LEAIQGHYTPRDAMAKAGE 342


>gi|294677220|ref|YP_003577835.1| terminase-like family protein [Rhodobacter capsulatus SB 1003]
 gi|294476040|gb|ADE85428.1| terminase-like family protein [Rhodobacter capsulatus SB 1003]
          Length = 455

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 80/292 (27%), Gaps = 31/292 (10%)

Query: 81  AISAGRGIGKTTLNAWMMLWL------ISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
            I  GRG GKT   A  +             P   +  +  +  Q+++ +    S  L+ 
Sbjct: 61  VIMGGRGAGKTRAGAEWVRMQVEGAGPADAGPAHRVALVGETFDQVRDVMIFGESGILAC 120

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
            P     E ++                             T                  A
Sbjct: 121 SPPDRRPEWEATKRRL------------------VWANGATAQAYSAQEPEALRGPQFDA 162

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254
            + DE +          +  F          + + T R  G    I N P      +   
Sbjct: 163 AWVDELAKWRRAEETWDMLQFALRLGKHPQQVITTTPRNVGVLKAILNNPST-VVTHAPT 221

Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314
                 +   F   + +RY     + R E+ G   +           +E    R A    
Sbjct: 222 EANRAYLAESFLAEVQARYAGT-RLGRQELEGVLLEDVEGALWTTAQLEGL--RLASPPA 278

Query: 315 YAPLIMGCDIA---GEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGCPV 363
              +++  D A   G G D+  +V         + DW A ++++ +  G P 
Sbjct: 279 MDRVVVALDPAVTGGAGSDECGIVVAGAVTRGPVQDWRAFVLEDASVRGRPT 330


>gi|163716617|gb|ABY40529.1| putative TerL [Burkholderia phage Bups phi1]
          Length = 531

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/368 (13%), Positives = 93/368 (25%), Gaps = 49/368 (13%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGI------------KGKP 44
           P  +   +   + L  +  +   + + + F           WG+               P
Sbjct: 12  PDYVQVFEWRAERLQRIRANPGVLPALRAFYRDNPAQFIIDWGMTFDPRNVERGLPATIP 71

Query: 45  LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
              F +   W       +                K      R +G + L   +   +   
Sbjct: 72  FLLFPKQEDW-------IAWFMERWRAREPGITEKT-----RDMGMSWLTVGLADTVCLF 119

Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
             G++    +  E         E    +       W   + L L P+ +       +   
Sbjct: 120 HEGVAAGFGSRKE---------EYVDKIGSPKSLFWKAREFLRLLPAEFRGSWDIGTHAP 170

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
             +       +         +G           DE++              T        
Sbjct: 171 HMRIIFPDTGSVITGESGDGIG-RGDRASFYVVDESAFLERPQLVDASLSATTNCRQD-- 227

Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
              S    +   F    +      K +    R     D  ++   ++    D  V   EI
Sbjct: 228 --ISTPNGMGNSFAQRRH--SGKIKVFTFHWRDDPRKDDAWYAKQVAEL--DPVVVAQEI 281

Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNII 342
              +        IP  +++ A+        +       G D+A EG DK     R G ++
Sbjct: 282 DINYAASVEGVVIPSAWVQAALGAHVKLGIEPSGTRRGGLDVADEGKDKNAFAGRYGFLL 341

Query: 343 EHIFDWSA 350
           EH+  WS 
Sbjct: 342 EHLESWSG 349


>gi|205374899|ref|ZP_03227691.1| hypothetical protein Bcoam_17870 [Bacillus coahuilensis m4-4]
          Length = 500

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/384 (11%), Positives = 94/384 (24%), Gaps = 87/384 (22%)

Query: 11  LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70
            E+EL+E+   A  ++ F N    +F    +G           +Q +F+  +  H  +  
Sbjct: 6   TEEELNELEKCANDIVYFAN-TYIWFNDKKRGIVQFEAY---PFQADFLLDLCEHQKN-- 59

Query: 71  NNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK 130
                      +   R +G +       L           + ++  ++   + L      
Sbjct: 60  ----------IVLKSRQMGLSWTALIWALHRCLFFFDQKGLILSMDKSAADDAL------ 103

Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
                 +R       L     G   +  +  +            +  +    T     + 
Sbjct: 104 ------NRIKVMYDYLPDFLKGDLGDNSKSIIE------FKDMNSMIKSVAMTESAGRSD 151

Query: 191 HGMAVFNDEASG-----TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL 245
                  DE +       P  +  S+            +I  S        F+  +    
Sbjct: 152 TPTFAIWDEMAFPRKGVDPYKVWDSLKPAL---GETGKFIGISTPNGFGNLFHRFWTQGE 208

Query: 246 ED-WKRYQIDTRTVEGI--------------------DSGFHEGII--------SRYGLD 276
           E  +++ QI   +                         +   E +             +D
Sbjct: 209 ERGFRKTQIHWTSRPDRVGSIELFNELEERRKRRLQPTTEQVERVKAVSHWYEMECKDMD 268

Query: 277 SDVARIEILGQFPQQE-------------VNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
            D    E    F                  N     N + + + +    +     I   D
Sbjct: 269 DDKFSQEYEMNFLNSGRPAFSISKVLKQFDNVLDKFNKLNDHIEQYKKPEAGVEYIAAFD 328

Query: 324 IA-GEGGDKTV--VVFRRGNIIEH 344
            + G GGD     +  R G  +  
Sbjct: 329 TSEGTGGDNNAFGIFTRDGEQVLE 352


>gi|213426918|ref|ZP_03359668.1| putative prophage terminase large subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
          Length = 374

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 59/171 (34%), Gaps = 5/171 (2%)

Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN- 242
                      ++ +EA    +   K +     +     ++I   N   +  + +  F  
Sbjct: 19  EEIKSLEGIDVLWLEEAHALTEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVV 76

Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302
            P ED    +I+      +     + I +    D +       G     +    I  ++I
Sbjct: 77  DPPEDTLIRKINYDENPFLSDTMLKVIDAARRRDPEGFVHVYEGVPESDDDAAIIKLSWI 136

Query: 303 EEAMSREAIDD--LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
           E A+    + D        +G D+A  G DK   V+R G++I    +W AK
Sbjct: 137 EAAVDAHKVLDFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAK 187


>gi|226940459|ref|YP_002795533.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
 gi|226715386|gb|ACO74524.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
          Length = 272

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 2/116 (1%)

Query: 239 DIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIP 298
                    W   QID+RTVEG +          YG +SD  ++ + G FP      FI 
Sbjct: 5   KCGRRFRHRWVARQIDSRTVEGTNKEQIAKWAEDYGEESDFFKVRVRGMFPSMSARQFIS 64

Query: 299 HNYIEEAMSREAIDD--LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
              +  A  R    +   YAP I+  D A EG D+ V+  R+G     +   +   
Sbjct: 65  ETDVSAAYGRALRPEQYQYAPKILTVDPAWEGDDEFVIGLRQGLSFRVLHTMAKND 120


>gi|6467533|gb|AAF13179.1|AF181080_1 putative gene transfer agent large terminase [Rhodobacter
           capsulatus]
          Length = 393

 Score = 88.5 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 79/292 (27%), Gaps = 35/292 (11%)

Query: 83  SAGRGIGKTTLNAWMMLWL------ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136
             GRG GKT   A  +             P   +  +  +  Q+++ +    S  L+  P
Sbjct: 1   MGGRGAGKTRAGAEWVRMQVEGAGPADAGPAHRVALVGETFDQVRDVMIFGESGILACSP 60

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
                E ++                             T                  A +
Sbjct: 61  PDRRPEWEATKRRL------------------VWANGATAQAYSAQEPEALRGPQFDAAW 102

Query: 197 NDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254
            DE +     +     +              + + T R  G    I N P      +   
Sbjct: 103 VDELAKWRRAEETWDMLQFALRLG--KHPQQVITTTPRNVGVLKAILNNPST-VVTHAPT 159

Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314
                 +   F   + +RY     + R E+ G   +           +E    R A    
Sbjct: 160 EANRAYLAESFLAEVQARYAGT-RLGRQELEGVLLEDVEGALWTTAQLEGL--RLASPPA 216

Query: 315 YAPLIMGCDIA---GEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGCPV 363
              +++  D A   G G D+  +V         + DW A ++++ +  G P 
Sbjct: 217 MDRVVVALDPAVTGGAGSDECGIVVAGAVTRGPVQDWRAFVLEDASVRGRPT 268


>gi|94497317|ref|ZP_01303888.1| hypothetical protein SKA58_07183 [Sphingomonas sp. SKA58]
 gi|94423180|gb|EAT08210.1| hypothetical protein SKA58_07183 [Sphingomonas sp. SKA58]
          Length = 437

 Score = 88.5 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 74/276 (26%), Gaps = 23/276 (8%)

Query: 64  VHCHSNVNNSNPTIFKCAIS-AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN 122
                    +    ++  +  AGRG GKT   A  +  +    P   I  +  S  + ++
Sbjct: 37  DFLARPGQRAPAGDWRIWLMMAGRGFGKTRAGAEWVRGIAEADPAARIALVGASLGEARS 96

Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182
            +    S  L++ PH             +                               
Sbjct: 97  VMVEGESGLLAIAPHWARPAYAPALRRLT------------------WPNGAVAMLFGAA 138

Query: 183 TFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242
              G         + DE +                       ++ + T R       +  
Sbjct: 139 DPEGLRGPQFSHGWADEIAKWASGEAAWHNLMMGMRLGRDPRVLVTTTPRPVPLVRSLVA 198

Query: 243 IPLEDWKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301
              +D    +  T   E  +  GF   + + YG    + R E+ G+  ++          
Sbjct: 199 RDGDDVVVTRGRTADNEANLAPGFVAAMTAGYGGT-RLGRQELDGELIEEVEGALWTRAL 257

Query: 302 IEEAMSREAIDDLYAPLIMGCD-IAGEGGDKTVVVF 336
           IE+         +   +++  D  A  GGD   +V 
Sbjct: 258 IEQCRVVHV-PGVLTRVVVAVDPPASVGGDACGIVV 292


>gi|326633035|ref|YP_004306624.1| terminase large subunit [Enterobacteria phage SPC35]
 gi|321272229|gb|ADW80121.1| terminase large subunit [Enterobacteria phage SPC35]
          Length = 438

 Score = 88.5 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 80/278 (28%), Gaps = 41/278 (14%)

Query: 69  NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
           N        F  A  + R +GK+ + A+ + +L    P + ++ +A + + L N  W+++
Sbjct: 47  NALEDPRHRFVTACVS-RRVGKSFI-AYTLGFLKLLEPNVKVLVVAPNYS-LANIGWSQI 103

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
              +     +   E                   + + +            +         
Sbjct: 104 RGLIKKYGLQTERENAKDK-------------EIELANGSLFKLASAAQADSAV------ 144

Query: 189 NTHGMAVFNDEASGTP---DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL 245
                 +  DEA+ +    D     +     + N         +T R   WF + +    
Sbjct: 145 GRSYDFIIFDEAAISDVGGDAFRVQLRPTLDKPNSKAL---FISTPRGGNWFKEFYAYGF 201

Query: 246 ED----WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301
           +D    W       R     D    E          +  R E    F   E   F   N 
Sbjct: 202 DDTLPNWVSIHGTYRDNPRADLNDIEEARRTVSK--NYFRQEYEADFSVFEGQIFDTFNA 259

Query: 302 IE-----EAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334
           I+     + M     DD     ++G D+     D T V
Sbjct: 260 IDHVKDLKGMRHFFKDDEAFETLLGIDVGY--RDPTAV 295


>gi|289581321|ref|YP_003479787.1| hypothetical protein Nmag_1649 [Natrialba magadii ATCC 43099]
 gi|289530874|gb|ADD05225.1| hypothetical protein Nmag_1649 [Natrialba magadii ATCC 43099]
          Length = 602

 Score = 88.5 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/374 (10%), Positives = 92/374 (24%), Gaps = 93/374 (24%)

Query: 38  WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97
           W                Q +    +  +             +  +    G+GK+ + A +
Sbjct: 27  WLEDAIEDYLGITVTGAQAQICRGIAANE------------RLLVVTANGLGKSYILAAI 74

Query: 98  MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
            +  ++ R        + +E ++K T    V                +    P  + +  
Sbjct: 75  TIVWLTVRYPACSFATSGTERKMKRTYCKPVENLHG----------DARVPLPGEYKSRP 124

Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG--TPDIINKSILGFF 215
               +  + +H+       S +      G H  +      +EA        +  ++    
Sbjct: 125 ERIEIDGEPEHFFEAA---SPQDAGELEGVHAAY-TLAIIEEADKKDVDAEVLDAMKSLV 180

Query: 216 TELNPNRFWIMTSNTRRLNG----WFYDIFNIPLEDWKRYQIDTRTVEGIDSGF------ 265
           T+       I  +N  +          D  + P   W+  +  +     +          
Sbjct: 181 TDEQDRI--IAIANPPKDETNSIYPILDEQDDPTSKWEVLEFSSFDSHNVQVELGNVDDE 238

Query: 266 ----------HEGIISRYGLDSD------------------------------------- 278
                      +     Y  +                                       
Sbjct: 239 KVDGLASLHKIQDDWEDYNKEPWPGAETARTLSAPKLDADGNPVFSHSDALEDNPEFRTD 298

Query: 279 ---VARIEILGQFPQQ--EVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTV 333
                     G  P      N     + +  A  R+       P   G D+A +GGD+T 
Sbjct: 299 LDQRWYRRRAGIIPPGGASKNRPFTIDDVNAAWGRDWQPV-GRPQATGIDVARDGGDRTP 357

Query: 334 VVFRRGNIIEHIFD 347
           V+   G+++E  ++
Sbjct: 358 VISVDGDVLEVRYE 371


>gi|46401884|ref|YP_006983.1| terminase, large subunit [Enterobacteria phage T5]
 gi|45775062|gb|AAS77194.1| terminase, large subunit [Enterobacteria phage T5]
 gi|59897286|gb|AAX12081.1| ORF144 [Enterobacteria phage T5]
          Length = 438

 Score = 88.5 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 80/278 (28%), Gaps = 41/278 (14%)

Query: 69  NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
           N        F  A  + R +GK+ + A+ + +L    P + ++ +A + + L N  W+++
Sbjct: 47  NALEDPRHRFVTACVS-RRVGKSFI-AYTLGFLKLLEPNVKVLVVAPNYS-LANIGWSQI 103

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
              +     +   E                   + + +            +         
Sbjct: 104 RGLIKKYGLQTERENAKDK-------------EIELANGSLFKLASAAQADSAV------ 144

Query: 189 NTHGMAVFNDEASGTP---DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL 245
                 +  DEA+ +    D     +     + N         +T R   WF + +    
Sbjct: 145 GRSYDFIIFDEAAISDVGGDAFRVQLRPTLDKPNSKAL---FISTPRGGNWFKEFYAYGF 201

Query: 246 ED----WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301
           +D    W       R     D    E          +  R E    F   E   F   N 
Sbjct: 202 DDTLPNWVSIHGTYRDNPRADLNDIEEARRTVSK--NYFRQEYEADFSVFEGQIFDTFNA 259

Query: 302 IE-----EAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334
           I+     + M     DD     ++G D+     D T V
Sbjct: 260 IDHVKDLKGMRHFFKDDEAFETLLGIDVGY--RDPTAV 295


>gi|319789040|ref|YP_004150673.1| protein of unknown function DUF264 [Thermovibrio ammonificans HB-1]
 gi|317113542|gb|ADU96032.1| protein of unknown function DUF264 [Thermovibrio ammonificans HB-1]
          Length = 419

 Score = 88.1 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/319 (16%), Positives = 109/319 (34%), Gaps = 51/319 (15%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            +Q+E ++ +D H  S             I   R  GK+ + ++      +T+P  +I+ 
Sbjct: 6   PYQIEIVKGIDSHKFS------------VIKMARQTGKSFVVSYWATRRATTKPNHAIVV 53

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWY--AELLEQSMGIDSKHYT 170
           ++ +E Q K            +   +    ++++ L    ++   EL +  +   +    
Sbjct: 54  VSPTERQSK------------LFVDKVKLHIKAMRLTGVKFFEDTELKKLEVNFPNGSQI 101

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTS 228
           I         P    G     G  V  DE +       + +++    T    +   +  S
Sbjct: 102 IA-------LPANPDGIRGFSGD-VIMDEVAFFKNWQEVYRAVFPIIT-RKKDYKLVAIS 152

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYG--LDSDVARIEILG 286
                N  FY +++I   + K ++      E +  G    +        + D  R E L 
Sbjct: 153 TPFGKNDLFYYLWSISENNPKWFRYSLNIFEAVAKGLKVDVEELRAGIKNEDAWRTEYLV 212

Query: 287 QFPQQEVNNFIPHNYIEEAMSREAID------DLYAPLIMGCDIAGEGGDKTVVVFR--- 337
           +F  +  +  +P+  I++    +         +L   L  G D+     D TV+      
Sbjct: 213 EFIDEA-DAVLPYELIQKCEMPKEELLVEDIKELKGELYCGVDVGRR-KDLTVITLLEKL 270

Query: 338 -RGNIIEHIFDWSAKLIQE 355
                +  I + S K  +E
Sbjct: 271 GDVLYVRRIEELSKKPFRE 289


>gi|167725769|ref|ZP_02409005.1| hypothetical protein BpseD_42528 [Burkholderia pseudomallei DM98]
          Length = 517

 Score = 88.1 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 73/267 (27%), Gaps = 20/267 (7%)

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
           R +G + L   +   +     G++    +  E         E    +       W   + 
Sbjct: 87  RDMGMSWLTVGLADTVCLFHEGVAAGFGSRKE---------EYVDKIGSPKSLFWKAREF 137

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
           L L P+ +       +     +       +         +G           DE++    
Sbjct: 138 LRLLPAEFRGSWDIGTHAPHMRIIFPDTGSVITGESGDGIG-RGDRASFYVVDESAFLER 196

Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265
                     T           S    +   F    +      K +    R     D  +
Sbjct: 197 PQLVDASLSATTNCRQD----ISTPNGMGNSFAQRRH--SGKIKVFTFHWRDDPRKDDAW 250

Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCD 323
           +   ++    D  V   EI   +        IP  +++ A+        +       G D
Sbjct: 251 YAKQVAEL--DPVVVAQEIDINYAASVEGVVIPSAWVQAALGAHVKLGIEPSGTRRGGLD 308

Query: 324 IAGEGGDKTVVVFRRGNIIEHIFDWSA 350
           +A EG DK     R G ++EH+  WS 
Sbjct: 309 VADEGKDKNAFAGRYGFLLEHLESWSG 335


>gi|238027169|ref|YP_002911400.1| hypothetical protein bglu_1g15550 [Burkholderia glumae BGR1]
 gi|237876363|gb|ACR28696.1| Hypothetical protein bglu_1g15550 [Burkholderia glumae BGR1]
          Length = 531

 Score = 88.1 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/368 (13%), Positives = 92/368 (25%), Gaps = 49/368 (13%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGI------------KGKP 44
           P  +   +   + L  +  +   + + + F           WG+               P
Sbjct: 12  PDYVQVFEWRAERLQRIRANPGVLPALRAFYRDNPAQFIIDWGMTFDPRNVERGLPATIP 71

Query: 45  LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
              F +   W       +                K      R +G + L   +   +   
Sbjct: 72  FLLFPKQEDW-------IAWFMERWRAREPGITEKT-----RDMGMSWLTVGLADTICLF 119

Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
             G++    +  E         E    +       W   + L L P+ +       +   
Sbjct: 120 HEGVAAGFGSRKE---------EYVDKIGSPKSLFWKAREFLRLLPAEFRGSWDIGTHAP 170

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
             +       +         +G           DE++              T        
Sbjct: 171 HMRIIFPDTGSVITGESGDGIG-RGDRASFYVVDESAFLERPQLVDASLSATTNCRQD-- 227

Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
              S    +   F    +      K +    R     D  ++   ++    D  V   EI
Sbjct: 228 --ISTPNGMGNSFAQRRH--SGKIKVFTFHWRDDPRKDDAWYAKQVAEL--DPVVVAQEI 281

Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNII 342
              +        IP  +++ A+                G D+A EG DK     R G ++
Sbjct: 282 DINYAASVEGVVIPSAWVQAALGAHVKLGISPSGARRGGLDVADEGKDKNAFAGRYGFLL 341

Query: 343 EHIFDWSA 350
           EH+  WS 
Sbjct: 342 EHLESWSG 349


>gi|18640524|ref|NP_570365.1| DNA packaging protein B [Synechococcus phage P60]
 gi|18478754|gb|AAL73303.1| DNA packaging protein B [Synechococcus phage P60]
          Length = 258

 Score = 88.1 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 70/271 (25%), Gaps = 44/271 (16%)

Query: 20  MHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFK 79
           +  +    F+ F+     W     P     +P R QL     +  +             +
Sbjct: 6   LETQIKEDFRVFLTLV--WRELDLP-----KPTRAQL----HIADYLQHGPK-------R 47

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             ISA RG+GK+ + A  +LW++   P   I+ I+ S+ +  N         L +    H
Sbjct: 48  LQISAFRGVGKSWITAAFVLWVLFNDPDKKIMVISASKERADNFSIFCQKLILDISWLNH 107

Query: 140 WFEMQSLSLHPSGWYAE-LLEQSMGIDSKHYTITCRTY----------SEERPDTFVGPH 188
                S        +     +       K   IT +              E P       
Sbjct: 108 LGPKDSDQRWSRISFDVGPAKPHQAPSVKSVGITGQMTGSRAHLMIFDDVEVPANSATDM 167

Query: 189 NTHGMAVFNDEASGT--------------PDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
               +     EA                 P                   W  T+  + L 
Sbjct: 168 QREKLLQLVTEAESILTPDDDSRILFLGTPQSTFTIYRKLAERSYRPFVWPCTAYPKDLI 227

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265
                    P    K  + + R     DS F
Sbjct: 228 RLM-RALPSPQHWLKTSRKEWRKDPPTDSRF 257


>gi|304360860|ref|YP_003856980.1| gp8 [Mycobacterium phage CrimD]
 gi|302858609|gb|ADL71354.1| gp8 [Mycobacterium phage CrimD]
          Length = 473

 Score = 87.7 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/351 (12%), Positives = 86/351 (24%), Gaps = 68/351 (19%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +WQ +  + V      +       +F  +I   R  GKT     ++  L    PG ++I
Sbjct: 43  DQWQDDLGKLVCA--KRSDGLYAADMFAMSI--PRQTGKTYFLGAIVFALCKMTPGTTVI 98

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A+       T  +                 Q+L+         L   +          
Sbjct: 99  WTAHRTRTAAETFKSM----------------QALAKREQIAPHILNVHTGNGKEAVLFT 142

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
                     +   G        +  DEA    +     ++   T  +PN   +      
Sbjct: 143 NGSRILFGAREKGFGRGFAKVDVLIFDEAQILSENAMDDMVPA-TNASPNGLILFAGTPP 201

Query: 232 RLNGW------------------------FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267
           +                              D  + P E+    +++        +    
Sbjct: 202 KPTDPGEVFTNLRLDAINGESDDVAYVEISADENDDPDEESTWRKMNPSYPHRTSARAIR 261

Query: 268 GIISRYGLDSDVARIEILGQFPQ-QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAG 326
            +      DS   R E +G + +       I  +   +       +    P  +G D++ 
Sbjct: 262 RMRKALSWDS--FRREAMGIWDKISVHAQVIKPSLWRDLADPLGPEPGAKPASLGVDMSH 319

Query: 327 EGGDKTVV-----VFRRGN--IIEHIFDWSAKLIQ-------ETNQEGCPV 363
            G     +              +E +  W+            E      PV
Sbjct: 320 GG----AISIGGCWLIDDELRHVEQV--WAGTDTAAAVEFIVERAGRRIPV 364


>gi|291334530|gb|ADD94183.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C1201]
 gi|291334650|gb|ADD94297.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C695]
          Length = 223

 Score = 87.7 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 63/242 (26%), Gaps = 33/242 (13%)

Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
           +          IA +  Q K+  W  + ++   +P                   +  E  
Sbjct: 1   MCPHKNPRFAYIAPTFKQAKSIAWDYMKQFTDKIP-----------------STKFNETE 43

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNP 220
           + +D           +    +   G    +      DE +     +  + I    +  + 
Sbjct: 44  LRVD----LPNGARITLLGAENSDGLRGIYLDGCVIDEYANIDGKLFAEIIRPALS--DR 97

Query: 221 NRFWIMTSNTRRLNGWFYDIFNIP--LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278
             + +       +N  FYD++      EDW  Y+      + +D    +      G    
Sbjct: 98  KGYCVFIGTPAGMNNNFYDLYQHANGAEDWFNYKAKASETKIVDQEELDKAKEVMGEKK- 156

Query: 279 VARIEILGQFPQQEVNNFIPHN---YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335
               E    +                 ++        D   P+    D+     D + ++
Sbjct: 157 -YLQEFECDWIANIEGAIYGEEIAKLDDKKQLARVPYDPTLPVSTAWDLGV--ADHSSII 213

Query: 336 FR 337
           F 
Sbjct: 214 FF 215


>gi|260433583|ref|ZP_05787554.1| putative phage terminase, large subunit [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417411|gb|EEX10670.1| putative phage terminase, large subunit [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 504

 Score = 87.7 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/336 (12%), Positives = 98/336 (29%), Gaps = 46/336 (13%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMML---WLISTRPGMSIICIANS 116
            +  + +  ++ +        + + GRG GK+TL+A + L       +      I IA  
Sbjct: 27  KLAPYQNKFIDGAYGPGINVGVLSVGRGNGKSTLSAILALGELVGAWSDAKEREILIAAK 86

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
             Q     W  V      LP      +               E     ++  + +   + 
Sbjct: 87  TQQQAQICWHYVVSLSKTLPEDVQAAITIRRQ-------PRFEIQFDDENGPHILRAISA 139

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTRR 232
             +          T       DE    P    D +  ++L   ++ +     I TS +  
Sbjct: 140 DGKSAL------GTSPTLAILDERGHWPLAQGDELEAALLTGLSKRDGKALIISTSASND 193

Query: 233 LNGWFYDIFNIPLEDWKRYQIDTR--------------------TVEGIDSGFHEGIISR 272
           ++ +   +       +++                              +     +  ++ 
Sbjct: 194 MHPFSLWLDREAPGVYRQEHRPEPGLPADDVASLIIANPGTKYGIGPSLKRLKDDAALAI 253

Query: 273 YGLDSDVARIEILGQFPQQEVNN---FIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329
               S ++R  +L +  + + +N    I  +   +    +A+     P ++G D+ G   
Sbjct: 254 ERGGSALSRFRLLSRNERVQEDNRDILISLDDWLKC-ETDALPPKSGPCVIGLDLGGSAS 312

Query: 330 DKTVVVFR-RGNIIEHIFDWSAKLIQETNQEGCPVG 364
                 +      +E    + +K   +   +   VG
Sbjct: 313 MSAAAYYWPETGRLECFGTFPSKPDLDARGQSDAVG 348


>gi|182682964|ref|YP_001837088.1| terminase, large subunit [Enterobacteria phage EPS7]
 gi|182630676|gb|ACB97608.1| terminase, large subunit [Enterobacteria phage EPS7]
          Length = 438

 Score = 87.3 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/308 (14%), Positives = 86/308 (27%), Gaps = 49/308 (15%)

Query: 69  NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
           N        F  A  + R +GK+ + A+ + +L    P + ++ +A + + L N  W+++
Sbjct: 47  NALEDPRHRFVTACVS-RRVGKSFI-AYTLGFLKLLEPNVKVLVVAPNYS-LANIGWSQI 103

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
              +     +   E                   + + +            +         
Sbjct: 104 RGLIKKYGLQTERENAKDK-------------EIELANGSLFKLASAAQADSAV------ 144

Query: 189 NTHGMAVFNDEASGTPD----IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244
                 +  DEA+   D      +  +     + N         +T R   WF + +   
Sbjct: 145 GRSYDFIIFDEAA-ISDVGGAAFDIQLRPTLDKPNSKAL---FISTPRGGNWFKEFYEKG 200

Query: 245 LED----WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
             +    W       R     D    E          +  R E    F   E   F   N
Sbjct: 201 FNETLPNWVSIHGTYRDNPRADLNDIEEARRTVSK--NYFRQEYEADFSVFEGQIFDTFN 258

Query: 301 YIE-----EAMSREAIDDLYAPLIMGCDIAGEGGDKTVV----VFRRGNIIEHIFDWSA- 350
            IE     + M     DD     ++G D+     D T V         ++   + ++   
Sbjct: 259 AIEHVKDLKGMRHFFKDDEAFETLLGIDVGY--RDPTAVLTIKYHYDTDVYYVLEEYQQA 316

Query: 351 -KLIQETN 357
            K   +  
Sbjct: 317 EKTTAQHA 324


>gi|159897910|ref|YP_001544157.1| hypothetical protein Haur_1384 [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159890949|gb|ABX04029.1| hypothetical protein Haur_1384 [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 477

 Score = 87.3 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/366 (12%), Positives = 88/366 (24%), Gaps = 70/366 (19%)

Query: 22  AECVLSFKNFVMRF--FPWGIKGKPLEHFSQPHRW--QLEFMEAVDVHCHSNVNNSNPTI 77
           A+C      F   F                    W  Q++ +  + +             
Sbjct: 8   AKCHADPAYFTHHFGLIDDAQGLGDGSGAMPFTLWPAQVQVLWTLLIQ------------ 55

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
               I   R +G + L     LWL   +PG  ++  +  + +    L   V +    LP 
Sbjct: 56  RLVLILKARQLGISWLCCAYALWLCLFQPGKVVLIFSKGQGEADEMLQR-VKRLYERLPE 114

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
                        S          +   +     +        P T     +     V  
Sbjct: 115 WMREA--------SPALVTDNTTELEWANGSRVKS-------LPATKGAGRSFTASLVIL 159

Query: 198 DEASG--TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NIPLEDWKRYQ 252
           DEA+       +  ++             I+ S    +   F+ ++         +    
Sbjct: 160 DEAAFLLWATQLYTALKPTIDGGGQ---LIVLSTANGIGNLFHQLWLKAISAKNRFTTIF 216

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEI---------------------LGQFPQQ 291
           +        D+ ++   +  Y  D D+ R E                      L Q P  
Sbjct: 217 LPWWARPTRDAAWYHNQLEEY-TDPDMVRQEYPSTAQEAFLVSGRTRFKMPWLLKQNPSD 275

Query: 292 E---VNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEG---GDKTVVVFRRGNIIEHI 345
                      + ++               I+  D+A EG   GD            E +
Sbjct: 276 GLALDELPASLSLLDGVTVYHL-PQQGRRYILAADVA-EGLEHGDFCAATLIDAVSWEEM 333

Query: 346 FDWSAK 351
                K
Sbjct: 334 ASVHGK 339


>gi|152990214|ref|YP_001355936.1| phage terminase, large subunit [Nitratiruptor sp. SB155-2]
 gi|151422075|dbj|BAF69579.1| phage terminase, large subunit [Nitratiruptor sp. SB155-2]
          Length = 398

 Score = 87.3 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/255 (12%), Positives = 73/255 (28%), Gaps = 29/255 (11%)

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
           P  +K     GRG  K+   A  +L L S +P + I+C    +  + +++   +S  +  
Sbjct: 18  PYRYKV-YYGGRGSAKSYNFALTLLVLASKQP-LRILCAREFQNSISDSVHRLLSDLIDK 75

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
             H   FE+    +      +E + + +  + +    T                      
Sbjct: 76  Y-HLPNFEVTQREIRNKLTGSEFIFKGLRHNIQSIKST-----------------EGVDI 117

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQI 253
            + +EA    +   + ++    +      W+   N   +    Y  F   P  +    ++
Sbjct: 118 CWVEEAQTVSEESWQILIPTIRKPGSE-IWVSF-NPYFVEDPTYQRFVVNPPSNAFVKKV 175

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF----IPHNYIEEAMSRE 309
             +          E +      D +       G+                + I+   S+E
Sbjct: 176 TYKDNPYFPDVLREEMEYDKKTDYERYMHVWEGECITYSDAQVFRDKFAIDTIDVGNSKE 235

Query: 310 AIDDLYAPLIMGCDI 324
                        D 
Sbjct: 236 VYYGADWGF--AVDP 248


>gi|289829424|ref|ZP_06547036.1| putative prophage terminase large subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
          Length = 346

 Score = 86.9 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 59/161 (36%), Gaps = 5/161 (3%)

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
            ++ +EA    +   K +     +     ++I   N   +  + +  F   P ED    +
Sbjct: 1   MLWLEEAHALTEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEDTLIRK 58

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
           I+      +     + I +    D +       G     +    I  ++IE A+    + 
Sbjct: 59  INYDENPFLSDTMLKVIDAARRRDPEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAHKVL 118

Query: 313 D--LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
           D        +G D+A  G DK   V+R G++I    +W AK
Sbjct: 119 DFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAK 159


>gi|119385627|ref|YP_916682.1| hypothetical protein Pden_2902 [Paracoccus denitrificans PD1222]
 gi|119376222|gb|ABL70986.1| protein of unknown function DUF264 [Paracoccus denitrificans
           PD1222]
          Length = 463

 Score = 86.9 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/294 (11%), Positives = 78/294 (26%), Gaps = 35/294 (11%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134
            I  GRG GKT   A  +   +             +  ++ +  Q ++ +    S  L+ 
Sbjct: 71  VIMGGRGAGKTRAGAEWVRAQVEGATPEAPGRARRVALVSETLDQARDVMVFGESGILAS 130

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
            P       ++                                                A
Sbjct: 131 SPPDRRPVWEAGRRRL------------------VWPNGAVAQLYSAHEPEALRGPQFDA 172

Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
            + DE +     +     +          +  ++T+  + +                 + 
Sbjct: 173 AWVDELAKWKKAEECWDMLQFALRLGEHPQ-QVVTTTPKNVA--VLKRLLRQSSTVTTHA 229

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
                   +   F   + +RYG    + R E+ G   +           +E    R    
Sbjct: 230 PTDANRAYLAESFLAEVQARYGGT-RLGRQELEGLLLEDVEGALWSAGLLERC--RVEAA 286

Query: 313 DLYAPLIMGCDIAGEGG---DKTVVVFRRGNIIEHIFDWSAKLIQETNQEGCPV 363
              + +++  D A  GG   D+  +V         +  W A ++++ +  G P+
Sbjct: 287 PALSRIVVAVDPAVTGGAAADECGIVVAGVVSEGPVTQWRAYVLEDASVRGGPL 340


>gi|221316961|ref|YP_002533105.1| putative terminase large subunit - phage associated [Bacillus
           cereus Q1]
 gi|221243293|gb|ACM16001.1| putative terminase large subunit - phage associated [Bacillus
           cereus Q1]
          Length = 425

 Score = 86.9 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 76/268 (28%), Gaps = 25/268 (9%)

Query: 72  NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131
               +I K     GRG GK+T  +  ++  +   P ++++CI   +  ++ + + ++ + 
Sbjct: 21  RKCESILKIVCKGGRGSGKSTDISICIVMDLIQFP-ITVLCIRKVKDTIRESCYEQIKEA 79

Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
           + +L   H F  +   +             +    +   I  R   +      +      
Sbjct: 80  IEILGVEHLFRFKESPM------------EIIYKPRGNKIIFRGADDPAKIKSIKIAKYP 127

Query: 192 GMAVFNDE-ASGTPDIINKSILGFFTE----LNPNRFWIMTSNTR-RLNGWFYDIFNIPL 245
               + +E A    +    +I                   + N   R   W    F    
Sbjct: 128 VAIAWFEELAEFKLEEDVSTIEKSILRKELPNGLRYKMYYSYNPPKRKQSWVNKKFETQF 187

Query: 246 EDWKRY--QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
           +    +           I   F E       L       E  G+ P       +P + + 
Sbjct: 188 KPKNTFVHHSTYHDNPHISKQFVEEAEETKRLKPQQYEHEYEGK-PTGSG--VVPFSNLT 244

Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDK 331
                +     +  +  G D  G G D 
Sbjct: 245 FRRITDEEIKTFDNIRQGID-WGYGNDA 271


>gi|72384687|gb|AAZ67635.1| phage terminase large subunit-like protein [Haemophilus parasuis
           29755]
          Length = 405

 Score = 86.5 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 71/275 (25%), Gaps = 38/275 (13%)

Query: 84  AGRGIGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            GRG  KT   A M   +   R        I+C       L+++   E+ + +       
Sbjct: 27  GGRGSAKTRTFAKMTAVVAYQRAMQGESGVILCGREFMNSLEDSSLEEIKQAIQ------ 80

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                        W  +  E                ++  R +          +  + DE
Sbjct: 81  ----------SEPWLTDFFEVGEKYVRTKCGRISYIFTGLRHNLDSIKSKARILLAWIDE 130

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY-QIDTRTV 258
           A    ++  + +L    E      W+   N  +        F    ++     +++    
Sbjct: 131 AESVSEMAWRKLLPTVRENGSE-IWLTW-NPEKKGSATDLRFRQHQDESMAIVEMNYSDN 188

Query: 259 EGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317
                   +  +      D    R    G + ++         Y E  +  + + D   P
Sbjct: 189 PWFPDVLEQERLRDKARLDDATYRWIWEGDYLEESEAQVFRGKYQE--LEFKPLPDFEGP 246

Query: 318 LIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
              G D  G   D T            I  W  K 
Sbjct: 247 YH-GLDF-GFAQDPTAA----------IKCWVFKD 269


>gi|154247076|ref|YP_001418034.1| hypothetical protein Xaut_3147 [Xanthobacter autotrophicus Py2]
 gi|154161161|gb|ABS68377.1| protein of unknown function DUF264 [Xanthobacter autotrophicus Py2]
          Length = 416

 Score = 86.5 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/264 (13%), Positives = 67/264 (25%), Gaps = 35/264 (13%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSML 135
           +  GRG GKT   A  +  L   RP         I  +A +   ++  +   VS  L++ 
Sbjct: 31  VLGGRGAGKTRAGAEWVRGLALGRPPFAGRPVGRIALVAETMADVREVMVEGVSGLLAVH 90

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
           P       +                                     +           A 
Sbjct: 91  PRAERPRWEPTRRRLE------------------WANGAVAQGFSAEDPESLRGPQFAAA 132

Query: 196 FNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253
           + DE +     +     +          R  +    T R       +   P       + 
Sbjct: 133 WLDELAKWKRAEATFDMLQFGLRLGAQPRQMVT--TTPRPTALLRRLLADPS--TAVTRA 188

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
            T       +    G +      + + R E+ G+  +   +       +E    REA   
Sbjct: 189 RTADNAFHLAPSFLGQVLTRYGGTRLGRQELDGELIEDRADALFSRPALEAL--REAQVP 246

Query: 314 LYAPLIMGCDI---AGEGGDKTVV 334
               +++  D    +  G D   +
Sbjct: 247 PLTRIVVAVDPPASSRAGADACGI 270


>gi|330810733|ref|YP_004355195.1| phage terminase protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378841|gb|AEA70191.1| Putative phage terminase protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 439

 Score = 86.5 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 70/293 (23%), Gaps = 47/293 (16%)

Query: 77  IFKCAISAGRGIGKTTL-------NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129
            F+ A+  GR  GKT L        A +      +     I   A ++ Q +   W  + 
Sbjct: 31  RFRDAVC-GRRFGKTFLGKAEMRRAAKLAAAWNVSVEDE-IWYAAPTQKQARRVFWRRLK 88

Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189
           + +                       +  E  M I  K              + +     
Sbjct: 89  QAIPKSWL----------------VTKPNETDMLITLKS----GHLLRCVGLENYDDLRG 128

Query: 190 THGMAVFNDEASGTPDIIN-KSILGFFT--------ELNPNRFWIMTSNTRRLNGWFYDI 240
           +    +  DE +        + I    +                 +   T +     YD 
Sbjct: 129 SGLFFILVDEWADCKYAAWEEVIRPMLSTCTYTLPNGEVRKGGHALRIGTPKGFNHCYDT 188

Query: 241 FNIPLEDWKRYQIDT----RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
           F       +               +     E    +   D    R E    F   +   +
Sbjct: 189 FQDGKPGHEPDHRSWLYTSLDGGNVPPEEIEAARRKM--DPRTFRQEYEASFENYQGVVY 246

Query: 297 IPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS 349
              N   EA            L +G D         VV   R ++   + ++S
Sbjct: 247 YTFN--REANRTSETIKRGEALHIGMDFNVM-KMAAVVHVIRDDLPLALSEFS 296


>gi|51512091|gb|AAU05290.1| terminase large subunit [Enterobacteria phage T5]
          Length = 438

 Score = 86.5 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 79/278 (28%), Gaps = 41/278 (14%)

Query: 69  NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
           N        F  A  + R +GK+ + A+ + +L    P + ++ +A + + L N  W+++
Sbjct: 47  NALEDPRHRFVTACVS-RRVGKSFI-AYTLGFLKLLEPNVKVLVVAPNYS-LANIGWSQI 103

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
              +     +   E                   + + +            +         
Sbjct: 104 RGLIKKYGLQTERENAKDK-------------EIELANGSLFKLASAAQADSAV------ 144

Query: 189 NTHGMAVFNDEASGTP---DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL 245
                 +  DEA+ +    D     +     + N         +T R   WF + +    
Sbjct: 145 GRSYDFIIFDEAAISDVGGDAFRVQLRPTLDKPNSKAL---FISTPRGGNWFKEFYAYGF 201

Query: 246 ED----WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301
           +D    W       R     D    E          +  R E    F   E   F   N 
Sbjct: 202 DDTLPNWVSIHGTYRDNPRADLNDIEEARRTVSK--NYFRQEYEADFSVFEGQIFDTFNA 259

Query: 302 IE-----EAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334
            +     + M     DD     ++G D+     D T V
Sbjct: 260 TDHVKDLKGMRHFFKDDEAFETLLGIDVGY--RDPTAV 295


>gi|332185581|ref|ZP_08387329.1| terminase-like family protein [Sphingomonas sp. S17]
 gi|332014559|gb|EGI56616.1| terminase-like family protein [Sphingomonas sp. S17]
          Length = 436

 Score = 86.5 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 80/280 (28%), Gaps = 25/280 (8%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
            E +E  ++  H              I AGRG GKT   A  +  L    PG  I  +  
Sbjct: 34  RELVERWELWAHDGQVAPPGDWRVWLIRAGRGFGKTRAGAEWVSALARDNPGARIALMGA 93

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
           +   ++  +    S  L++       +                   +G   + +  +   
Sbjct: 94  TLRDVERVMVRGESGLLAVARKGEAPKW------------------IGSLGQVHFTSGAI 135

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
                             A + DE                T        ++ + T R   
Sbjct: 136 GFAYSAAAPEALRGPQHHAAWCDELGKWKGEA-GWDNLMMTLRLGEHPRVLVTTTPRATP 194

Query: 236 WFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN 295
               +  +P +  +     +     +   F + ++S+YG D+ + R E+ G+        
Sbjct: 195 LMRKVMALP-DCVETIGRTS-DNAHLPDSFQDAMLSQYG-DTRLGRQELDGEMVDDREGA 251

Query: 296 FIPHNYIEEAMSREAIDDLYAPLIMGCD-IAGEGGDKTVV 334
                 ++    R         +++G D  A   GD   +
Sbjct: 252 LWTRALLDR--QRVKTVPALDRVVVGVDPPATSSGDACGI 289


>gi|260433350|ref|ZP_05787321.1| phage DNA Packaging Protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417178|gb|EEX10437.1| phage DNA Packaging Protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 427

 Score = 86.5 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/296 (13%), Positives = 78/296 (26%), Gaps = 36/296 (12%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134
            I  GRG GKT   A  +  ++             +  +  +  Q+++ +    S  +  
Sbjct: 34  VIMGGRGAGKTRAGAEWVRSMVEGAKPFDEGEARRVALVGETFDQVRDVMIFGDSGIMQC 93

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
            P     + ++                                        G       A
Sbjct: 94  SPPDRRPQWKASERKL------------------VWPNGAEAQAFSAHDPEGLRGPQFDA 135

Query: 195 VFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
            + DE +           +          R  +    T R      D+   P      + 
Sbjct: 136 AWVDELAKWKKAGETWDMLQFALRLGERPRVCVT--TTPRNVKVLKDLLAAPST-VMTHA 192

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
                   +   F + + +RY     + R E+ G             + ++ A  R    
Sbjct: 193 PTEANRANLAESFLQEVRARYAGT-RLGRQELDGVLLADAEGALWTGSMLDGA--RVGAV 249

Query: 313 DLYAPLIMGCDIA---GEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC-PVG 364
                +++  D A   G G D   +V     +     DW A ++ +   +G  P G
Sbjct: 250 PELDRVVVALDPAVTGGSGADACGIVVVGAQLQGPPEDWRAYVLADRTVQGVGPAG 305


>gi|121602586|ref|YP_988560.1| PBSX family phage terminase large subunit [Bartonella bacilliformis
           KC583]
 gi|120614763|gb|ABM45364.1| putative phage terminase, large subunit, PBSX family [Bartonella
           bacilliformis KC583]
          Length = 402

 Score = 86.2 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/261 (12%), Positives = 69/261 (26%), Gaps = 30/261 (11%)

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I+C    +  L  +   E+ + +   P                +Y    +     D +  
Sbjct: 18  ILCARQFQNSLNESSLEEIKRAIEAYP------------FLRDYYDVGDKYVKSKDGRIL 65

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP---NRFWIM 226
                          +G      +  + DEA    +   ++++    E      +  W+ 
Sbjct: 66  YTFAGLDRNISSIKSMG----RILLCWVDEAEPVTETAWQTLIPTLREEGQDWHSELWVT 121

Query: 227 TSNTRRLNGWFYDIFNIPLE-DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
             N  R N      F +  + + K  +I+ R         +   ++      +       
Sbjct: 122 W-NPLRENAPVEKRFRLTKDPNIKGVEINWRDNPQFPDKLNRDRLADLHQRPEQYGHIWE 180

Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI---MGCDIAGEG--GDKTVVVFRRGN 340
           G + Q     +     ++             PLI   +  DI G G   D T +   +  
Sbjct: 181 GDYLQAVQGAYYQKLLLDAEQEGRIAHVSRDPLIQIKIFWDIGGTGAKADATALWVAQ-- 238

Query: 341 IIEHIFDWSAKLIQETNQEGC 361
                 +       E   +  
Sbjct: 239 --FIGREIRILDYYEAQGQPL 257


>gi|46143644|ref|ZP_00204538.1| COG1783: Phage terminase large subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 407

 Score = 85.8 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 73/273 (26%), Gaps = 32/273 (11%)

Query: 77  IFKCAISAGRGIGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAEVSKWL 132
            ++CA   GRG  KT   A M       R        I+C       L+ +   EV + +
Sbjct: 21  RYRCAY-GGRGSAKTRTFALMTAVWALRRDQAGDSGVILCAREYMNSLEESSLEEVKQAI 79

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
                             + W                      ++  R +          
Sbjct: 80  R----------------STSWLEPHFVIGEKFIKTKSGRISYVFAGLRHNLDSIKSKARI 123

Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL-EDWKRY 251
           +  + +EA    ++  + +     E N    W+   N  +        F   + E+ K  
Sbjct: 124 LLAWVEEAETVSEVAWQKLEPTVREHNSE-IWVTW-NPEKRGSATDLRFRQHVPENAKII 181

Query: 252 QIDTRTVEGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
           +++            +  ++     D    R    G + +Q         Y E  +  E 
Sbjct: 182 EMNYSDNPWFPKELEQTRLADKARLDDATYRWIWEGAYLEQSEAQIFRDKYQE--LEFEP 239

Query: 311 IDDLYAPLIMGCDIAGEGGDKTVV---VFRRGN 340
             D   P   G D  G   D T         G+
Sbjct: 240 NPDFDGPYH-GLDF-GFANDPTAAIKCWVFDGD 270


>gi|86750583|ref|YP_487079.1| hypothetical protein RPB_3472 [Rhodopseudomonas palustris HaA2]
 gi|86573611|gb|ABD08168.1| Protein of unknown function DUF264 [Rhodopseudomonas palustris
           HaA2]
          Length = 431

 Score = 85.8 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 44/292 (15%), Positives = 73/292 (25%), Gaps = 36/292 (12%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAIS-AGRGIGKTTLNAWMMLWLIS------TRPG 107
           Q +F      H       +N   +   +   GRG GKT   A  +  L         RP 
Sbjct: 18  QHDFATFAHPHQEHGEAGNNGGPWTTWLLLGGRGAGKTRTGAEWVRALAHGTPPYAERPH 77

Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
             I  I  S    +  +    S  L   P     E  +                      
Sbjct: 78  RRIALIGESWQDAREVMVEGESGLLRCSPRAERPEWIASRRRLE---------------- 121

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWI 225
                         D           A + DE +     +    ++          R  +
Sbjct: 122 --WRNGAVGQVFSADDPESLRGPQFDAAWCDELAKWRYAEACFDTLQFGLRLGLQPRQLV 179

Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
               T R       +   P              + +   F + ++ RY     + R E+ 
Sbjct: 180 T--TTPRPLPLIKRLLADPRTR-VTRAPTKANADHLSPAFLDAVVGRYAGT-RMGRQELD 235

Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE---GGDKTVV 334
           G+  +   +       IE    R A     A +++  D  G    G D   +
Sbjct: 236 GEMIEDRADALWSRALIESC--RVAQPPGLARVVVAIDPPGTSKVGADACGI 285


>gi|49476071|ref|YP_034112.1| phage related protein [Bartonella henselae str. Houston-1]
 gi|49238879|emb|CAF28172.1| phage related protein [Bartonella henselae str. Houston-1]
          Length = 402

 Score = 85.8 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/261 (11%), Positives = 65/261 (24%), Gaps = 30/261 (11%)

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I+C    +  L  +   E+ + +   P                +Y    +     D +  
Sbjct: 18  ILCARQFQNSLNESSLEEIKRAIESYP------------FLQDYYEIGDKYIKSKDGRIV 65

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN---RFWIM 226
            +          +             + DEA    +   ++++    E   +     W+ 
Sbjct: 66  YVFAGLDR----NIASIKSMGRVFLCWVDEAEPVTETAWQTLIPTLREEGNDWNAELWVT 121

Query: 227 TSNTRRLNGWFYDIFNIPLEDW-KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
             N  R N      F        K  +I  R         +    +      +       
Sbjct: 122 W-NPCRENAPVEKRFRNVNNPHIKGAEITWRDNPQFPEKLNRDRKADLEQRPEHYNHIWE 180

Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI---MGCDIAGEG--GDKTVVVFRRGN 340
           G++ Q     +     +E +           PL+   +  DI G G   D T +   +  
Sbjct: 181 GEYLQTVEGAYYQKALLEASREGRITTVPRDPLMQIRIFWDIGGTGAKADATALWVAQ-- 238

Query: 341 IIEHIFDWSAKLIQETNQEGC 361
                 +       E   +  
Sbjct: 239 --FVGREIRVLDYYEAQGQPL 257


>gi|254362872|ref|ZP_04978947.1| bacteriophage terminase large subunit [Mannheimia haemolytica
           PHL213]
 gi|153094509|gb|EDN75343.1| bacteriophage terminase large subunit [Mannheimia haemolytica
           PHL213]
          Length = 410

 Score = 85.4 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 71/256 (27%), Gaps = 28/256 (10%)

Query: 84  AGRGIGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            GRG GKT   A M       R        I+C       L+ +   EV + +   P   
Sbjct: 26  GGRGSGKTRAFAKMSAVSAYKRAMRGESGVILCGREFMNSLEESSLEEVKQAIKSEP--- 82

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                      + ++    +     D +   +    +S  R +          +  + DE
Sbjct: 83  ---------FLANFFDVGEKYVRTKDGRISYV----FSGLRHNLDSIKSKARILIAWIDE 129

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-PLEDWKRYQIDTRTV 258
           A    +   + ++    E N    W+   N           F   P E+    ++  +  
Sbjct: 130 AETVSETAWRKLIPTVRENNSE-IWVTW-NPENRGSATDTRFRQNPPENSCIIEMSYQDN 187

Query: 259 EGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317
                   +  ++     D    R    G + +          Y E  +  +   D   P
Sbjct: 188 PWFPDVLEQERLNDKQRLDDATYRWIWEGDYLESSDAQIFRDKYQE--LEFKPNPDFNGP 245

Query: 318 LIMGCDIAGEGGDKTV 333
              G D  G   D T 
Sbjct: 246 YY-GLDF-GFANDPTA 259


>gi|171914351|ref|ZP_02929821.1| hypothetical protein VspiD_24270 [Verrucomicrobium spinosum DSM
           4136]
          Length = 450

 Score = 85.4 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 82/282 (29%), Gaps = 32/282 (11%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
            + + FK  + + R  GK   +A  ++     R   + +  A SE Q   TL    S+W 
Sbjct: 17  DDESRFKYGLWS-RQTGKDFSSAAEIVRDCKLRDKTTWMIAAPSERQSLETLAKC-SEWS 74

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
                      + +     G  A L +  +   +    I         P           
Sbjct: 75  EAF----DLASEGIREERDGPEALLKQGEIKFANGSRVIA-------VPGRPDTVRGFSA 123

Query: 193 MAVFNDEASG--TPDIINKSILGFFTEL--NPNRFWIMTSNTRRLNGWFYDIF---NIPL 245
             V   E +    PD   ++IL   T       +   + +         +D++   N   
Sbjct: 124 N-VLMTEFAFFEDPDATWRAILPSITNPLRGGEKKVRLITTPNGQGNKAHDLWTKENSTK 182

Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI--- 302
             W ++++                +     D +    E   +F        + +  I   
Sbjct: 183 HKWSKHKVTIHDAVAAGLPVDPEELRAMLDDPEGWAQEYECEFLDAA-GVLLSYELIGSC 241

Query: 303 EEAMSREAIDDLYA------PLIMGCDIAGEGGDKTVVVFRR 338
           E   +     D +       PL  G D A +  D +V+   +
Sbjct: 242 EAPEATTTQPDAFWAARPQFPLYAGWDFARK-KDLSVLWTAQ 282


>gi|49474625|ref|YP_032667.1| phage related protein [Bartonella quintana str. Toulouse]
 gi|49240129|emb|CAF26575.1| phage related protein [Bartonella quintana str. Toulouse]
          Length = 402

 Score = 85.4 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/261 (11%), Positives = 66/261 (25%), Gaps = 30/261 (11%)

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I+C    +  L  +   E+ + + + P                +Y    +     D +  
Sbjct: 18  ILCARQFQNSLNESSLEEIKRAIEVYP------------FLQDYYEIGDKYIKSKDGRII 65

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN---RFWIM 226
            +          +             + DEA    +   ++++    E   +     W+ 
Sbjct: 66  YVFAGLDR----NIASIKSMGRVFLCWVDEAEPVTETAWQTLIPTLREEGKDWNAELWVT 121

Query: 227 TSNTRRLNGWFYDIFNIPLE-DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
             N  R N      F      + K  +I+ R         +    +      +       
Sbjct: 122 W-NPCRENAPVEKRFRNVENPNIKGAEINWRDNPLFPQKLNRDRKADLQQRPENYNHIWE 180

Query: 286 GQFPQQEVNNFIPHNYIEE---AMSREAIDDLYAPLIMGCDIAGEG--GDKTVVVFRRGN 340
           G++ Q     +     +E            D    + +  DI G G   D T +   +  
Sbjct: 181 GEYLQSVQGAYYQKALLEAELEGRITNVPRDPLMQIKIFWDIGGTGAKADATALWVAQ-- 238

Query: 341 IIEHIFDWSAKLIQETNQEGC 361
                 +       E   +  
Sbjct: 239 --FIGREIRVLDYYEAQGQPL 257


>gi|89071120|ref|ZP_01158320.1| Putative large terminase [Oceanicola granulosus HTCC2516]
 gi|89043331|gb|EAR49553.1| Putative large terminase [Oceanicola granulosus HTCC2516]
          Length = 444

 Score = 85.4 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 70/264 (26%), Gaps = 32/264 (12%)

Query: 81  AISAGRGIGKTTLNAWMMLWLIS----TRPGM--SIICIANSETQLKNTLWAEVSKWLSM 134
            I  GRG GKT   A  +   +     T PG    +  +  +  Q +  +    S  L+ 
Sbjct: 57  VILGGRGAGKTRAGAEWVRAQVEGPRATDPGRARRVALVGETIDQAREVMVFGDSGLLAC 116

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
            P     E  +                                                A
Sbjct: 117 APPDRRPEWIAGRRLL------------------VWPNGAQAQLFSAHDPEALRGPQFDA 158

Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
            + DE +     +     +       +  R  +    T R       +        + + 
Sbjct: 159 AWVDELAKWKKAEEAWDMLQLALRLGDDPRCCVT--TTPRPTALMRALLERD-GTARTHA 215

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
                   +   F   +  RY   S + R E+ G    +          I  A + + + 
Sbjct: 216 PTEANAANLARAFLAEVRRRYAG-SPLGRQELDGVMLSEIEGALWSAGAI-AAANCDVVP 273

Query: 313 DLYAPLIMGCDIAGEGGDKTVVVF 336
           DL+  +++  D +  GGD   +V 
Sbjct: 274 DLH-RVVVAVDPSAGGGDVCGIVV 296


>gi|171915351|ref|ZP_02930821.1| hypothetical protein VspiD_29290 [Verrucomicrobium spinosum DSM
           4136]
          Length = 451

 Score = 85.4 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 83/282 (29%), Gaps = 32/282 (11%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
            + + FK  + + R  GK   +A  ++     R   + +  A SE Q   TL     +W 
Sbjct: 18  DDESRFKYGLWS-RQTGKDFSSAAEIVRDCKLRDKTTWMIAAPSERQSLETLAKC-GEWS 75

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
                      + +     G  A L +  +   +    I         P           
Sbjct: 76  EAF----DLASEGIREERDGPEALLKQGEIKFANGSRVIA-------VPGRPDTVRGFSA 124

Query: 193 MAVFNDEASG--TPDIINKSILGFFTEL--NPNRFWIMTSNTRRLNGWFYDIF---NIPL 245
             V   E +    PD   ++IL   T       +   + +         +D++   N   
Sbjct: 125 N-VLMTEFAFFEDPDATWRAILPSITNPLRGGEKKVRLITTPNGQGNKAHDLWTKENSTK 183

Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI--- 302
             W ++++                +     D +    E   +F        +P+  I   
Sbjct: 184 HKWSKHKVTIHDAVAAGLPVDPEELRAMLDDPEGWAQEYECEFLDSA-GVLLPYELIATC 242

Query: 303 EEAMSREAIDDLYA------PLIMGCDIAGEGGDKTVVVFRR 338
           E A +     D +       PL  G D A +  D +V+   +
Sbjct: 243 EAAEATTTQADAFWNARQQFPLYAGWDFARK-KDLSVLWTAQ 283


>gi|37527280|ref|NP_930624.1| hypothetical protein plu3406 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36786714|emb|CAE15780.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 418

 Score = 85.4 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 77/266 (28%), Gaps = 30/266 (11%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG GK+   A  ++ L+     M+I+C    +  + +++ A +   +  L   H++++
Sbjct: 28  GGRGGGKSVEIARALV-LLGAIEPMTILCAREFQNSINDSVLALLEAQIIDLGLSHFYKV 86

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
           ++                +   +                +    H       + +EA   
Sbjct: 87  KNN--------------EIEGQNGTRFTFKGL--RNNIQSIKSMHG--IKICWVEEAQTV 128

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW-----KRYQIDTRTV 258
                  +       N +  W+   N R      Y +     ED         +++    
Sbjct: 129 SQDSWDILGPTVR-ANKSEVWVSF-NPREEEDPTYKLMTRHQEDPSDGGVIIRKVNYCDN 186

Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
                   + +     +D +      LG              Y  EA S + +      L
Sbjct: 187 AFFPDVLRQEMEYCKRIDYEAYEHIWLGLPKALSEAVIFSGKYRVEAFS-DELWLEADRL 245

Query: 319 IMGCDIAGEGGDKTVV--VFRRGNII 342
             G D  G   D + +   F  G  +
Sbjct: 246 FYGADF-GFANDPSTLVRCFIIGTKL 270


>gi|261495269|ref|ZP_05991723.1| bacteriophage terminase large subunit [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261309094|gb|EEY10343.1| bacteriophage terminase large subunit [Mannheimia haemolytica
           serotype A2 str. OVINE]
          Length = 406

 Score = 85.0 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/292 (15%), Positives = 77/292 (26%), Gaps = 35/292 (11%)

Query: 84  AGRGIGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            GRG GKT   A M       R        I+C       L+ +   EV + +   P   
Sbjct: 26  GGRGSGKTRAFAKMSAVSAYKRAMQGESGVILCGREFMNSLEESSLEEVKQAIKSEP--- 82

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                      + ++    +     D +   +    +S  R +          +  + DE
Sbjct: 83  ---------FLANFFDVGEKYVRTKDGRISYV----FSGLRHNLDSIKSKARILIAWIDE 129

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-PLEDWKRYQIDTRTV 258
           A    +   + ++    E N    W+   N           F   P E+    ++  +  
Sbjct: 130 AETVSETAWRKLIPTVRENNSE-IWVTW-NPENRGSATDTRFRQNPPENSCIIEMSYQDN 187

Query: 259 EGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317
                   +  ++     D    R    G + +          Y E  M      D   P
Sbjct: 188 PWFPDVLEQERLNDKQRLDDATYRWIWEGAYLEASEAQIFRGKYQE--MEFVPNPDFDGP 245

Query: 318 LIMGCDIAGEGGDKTVV---VFRRGNIIEHIFDWS----AKLIQETNQEGCP 362
              G D  G   D T         G++                 +   +G P
Sbjct: 246 YY-GLDF-GFAQDPTAAVKCWVFNGDLYIEFEAGKVGLELDDTADFIAKGVP 295


>gi|317120885|ref|YP_004100888.1| hypothetical protein Tmar_0036 [Thermaerobacter marianensis DSM
           12885]
 gi|315590865|gb|ADU50161.1| hypothetical protein Tmar_0036 [Thermaerobacter marianensis DSM
           12885]
          Length = 410

 Score = 84.6 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 84/287 (29%), Gaps = 31/287 (10%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
            E +                  ++   I AGRG GKT   A  +   +       I  + 
Sbjct: 9   AEALLYDWRFWARPKQLPPEGPWRIWLILAGRGFGKTRTGAEWVREQVERHGRRRIAIVG 68

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            +   +++ +    S  LS+ P       +      +                       
Sbjct: 69  RTAADVRDVMVEGESGILSISPPWFRPVYEPSKRRLT------------------WPNGA 110

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRR 232
             +    D           A + DE +    P+  +  + G     +P    ++ + T R
Sbjct: 111 IATLYSADEPDLLRGPQHDAAWADELAAWRRPEAWDNLMFGLRLGPDPR---VVVTTTPR 167

Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292
                 D+ N P                +   F E IISRY   + + R E+ G+     
Sbjct: 168 PVKLIRDLLNDPT-CVVTRGSTYENAANLAPAFLEQIISRY-EGTRLGRQELYGEVLDDV 225

Query: 293 VNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE---GGDKTVVVF 336
                    I+E   REA       +++  D A     G D+T +V 
Sbjct: 226 PGALWQRKRIDELRVREAP--ELVRVVVAIDPAVTSEEGSDETGIVV 270


>gi|149203834|ref|ZP_01880803.1| Putative large terminase [Roseovarius sp. TM1035]
 gi|149142951|gb|EDM30993.1| Putative large terminase [Roseovarius sp. TM1035]
          Length = 419

 Score = 84.6 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/312 (12%), Positives = 78/312 (25%), Gaps = 36/312 (11%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAI-SAGRGIGKTTLNAWMMLWLISTRPG------MSI 110
            +  +               ++  +   GRG GKT   A  +   +             I
Sbjct: 2   ALPYLFEFWALPHQLPPSGDWRTWVIMGGRGAGKTRAGAEWVRSEVEGARPMDSGRCKRI 61

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
             +  +  Q++  +    S  L+  P     E Q+                         
Sbjct: 62  ALVGETIDQVREVMIFGESGILACSPPDRRPEWQATRKRL------------------IW 103

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTS 228
                          G         + DE +           +          R  +   
Sbjct: 104 PNGAVAQAFSAHDPEGLRGPQFDGAWVDELAKWKRARETWDMLQFGLRLGEAPRVCVT-- 161

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
            T R  G   DI   P                +   F + + +RY     + R E+ G  
Sbjct: 162 TTPRNVGVLKDILATPST-VTSSAPTEANRAHLAESFLDEVRARYAGT-RLGRQELDGLL 219

Query: 289 PQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEG---GDKTVVVFRRGNIIEHI 345
             +  +       +E A  R      +  +++  D    G    D+  ++         +
Sbjct: 220 IDEAEDALWSPAMLEAA--RVDTLPEFDRVVVAVDPPVSGHAASDECGIIVVGAITRGPV 277

Query: 346 FDWSAKLIQETN 357
            DW A ++ + +
Sbjct: 278 QDWRAYVLADAS 289


>gi|85702762|ref|ZP_01033866.1| Putative large terminase [Roseovarius sp. 217]
 gi|85671690|gb|EAQ26547.1| Putative large terminase [Roseovarius sp. 217]
          Length = 419

 Score = 84.6 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 70/280 (25%), Gaps = 35/280 (12%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134
            I  GRG GKT   A  +   +             I  +  +  Q++  +    S  ++ 
Sbjct: 26  VIMGGRGAGKTRAGAEWVRAQVEGSRPLDEGRCKRIALVGETIDQVREVMVFGESGIMAC 85

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
            P     + Q+                                                 
Sbjct: 86  SPPDRRPDWQATRKRL------------------IWPNGAVAQAYSAHDPEALRGPQFDG 127

Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
            + DE +           +       +  R  +    T R  G   DI  +P        
Sbjct: 128 AWVDELAKWKRARETWDMLQFGLRLGDAPRVCVT--TTPRNVGVLKDIVAVPST-VVTSA 184

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
                   +   F + + +RY     + R E+ G    +  +       +E A  R    
Sbjct: 185 PTEANRAYLAESFLDEVRARYAGT-RLGRQELDGLLIDEAEDALWTPAMLEAA--RVESL 241

Query: 313 DLYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWS 349
             +  +++  D       G D+  ++         + DW 
Sbjct: 242 PEFDRVVVAVDPPVTGHAGSDECGIIMAGAITRGPVQDWR 281


>gi|307263070|ref|ZP_07544692.1| Phage terminase, large subunit, PBSX family [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|306871696|gb|EFN03418.1| Phage terminase, large subunit, PBSX family [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 407

 Score = 84.6 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/266 (14%), Positives = 69/266 (25%), Gaps = 31/266 (11%)

Query: 84  AGRGIGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            GRG  KT   A M       R        I+C       L+ +   EV + +       
Sbjct: 27  GGRGSAKTRTFALMTAVWALRRDQAGDSGVILCAREYMNSLEESSLEEVKQAIR------ 80

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                      + W                      ++  R +          +  + +E
Sbjct: 81  ----------STSWLEPHFVIGEKFIKTKSGRISYVFAGLRHNLDSIKSKARILLAWVEE 130

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL-EDWKRYQIDTRTV 258
           A    ++  + +     E N    W+   N  +        F   + E+ K  +++    
Sbjct: 131 AETVSEVAWQKLEPTVREHNSE-IWVTW-NPEKRGSATDLRFRRHVPENAKIIEMNYSDN 188

Query: 259 EGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317
                   +  ++     D    R    G + +Q         Y E  +  E   D   P
Sbjct: 189 PWFPKELEQTRLADKARLDDATYRWIWEGAYLEQSEAQIFRDKYQE--LEFEPNPDFDGP 246

Query: 318 LIMGCDIAGEGGDKTVV---VFRRGN 340
              G D  G   D T         G+
Sbjct: 247 YH-GLDF-GFANDPTAAIKCWVFDGD 270


>gi|84687436|ref|ZP_01015314.1| Putative large terminase [Maritimibacter alkaliphilus HTCC2654]
 gi|84664594|gb|EAQ11080.1| Putative large terminase [Rhodobacterales bacterium HTCC2654]
          Length = 426

 Score = 84.2 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/291 (13%), Positives = 77/291 (26%), Gaps = 36/291 (12%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAI-SAGRGIGKTTLNAWMMLWLISTRPG------MSI 110
            +  V      +        ++  +   GRG GKT   A  +   +             +
Sbjct: 8   ALPYVFEFWALDHQLPPEGDWRTWVILGGRGAGKTRAGAEWVRAQVEGPAPLSPGRAGRV 67

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
             I  +  Q+++ +    S  ++  P       ++                         
Sbjct: 68  ALIGETFDQVRDVMVFGDSGIVACAPPDRRPAWEATKRRL------------------VW 109

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTS 228
               T +        G       A + DE +     D     +       +  R  ++T+
Sbjct: 110 PNGATATSFSASEPEGLRGPQFDAAWADELAKWKKVDDAWDMLQFALRLGDHPR-QVVTT 168

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
             R +                 +   T     +   F E I +RYG    + R E+ G  
Sbjct: 169 TPRDV--PILRRLLTLSSTVTTHAPTTANRANLAKSFLEEIEARYGGT-RLGRQELEGVL 225

Query: 289 PQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVVVF 336
                  F     +E+   R       + +++  D       G D+  +V 
Sbjct: 226 LDDREGAFWSTAMLEDC--RIDGPPPLSRIVVAVDPPVTGHAGSDECGIVV 274


>gi|307252059|ref|ZP_07533958.1| Phage terminase, large subunit, PBSX family [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860359|gb|EFM92373.1| Phage terminase, large subunit, PBSX family [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 407

 Score = 84.2 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/266 (14%), Positives = 69/266 (25%), Gaps = 31/266 (11%)

Query: 84  AGRGIGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            GRG  KT   A M       R        I+C       L+ +   EV + +       
Sbjct: 27  GGRGSAKTRTFALMTAVWALRRDQAGDSGVILCAREYMNSLEESSLEEVKQAIR------ 80

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                      + W                      ++  R +          +  + +E
Sbjct: 81  ----------STSWLEPHFVIGEKFIKTKSGRISYVFAGLRHNLDSIKSKARILLAWVEE 130

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL-EDWKRYQIDTRTV 258
           A    ++  + +     E N    W+   N  +        F   + E+ K  +++    
Sbjct: 131 AETVSEVAWQKLEPTVREHNSE-IWVTW-NPEKRGSATDLRFRRHVPENAKIIEMNYSDN 188

Query: 259 EGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317
                   +  ++     D    R    G + +Q         Y E  +  E   D   P
Sbjct: 189 PWFPKELEQTRLADKARLDDATYRWIWEGAYLEQSEAQIFRDKYQE--LEFEPNPDFDGP 246

Query: 318 LIMGCDIAGEGGDKTVV---VFRRGN 340
              G D  G   D T         G+
Sbjct: 247 YY-GLDF-GFANDPTAAIKCWVFDGD 270


>gi|303251622|ref|ZP_07337796.1| hypothetical protein APP6_0825 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302649620|gb|EFL79802.1| hypothetical protein APP6_0825 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 409

 Score = 84.2 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/266 (14%), Positives = 69/266 (25%), Gaps = 31/266 (11%)

Query: 84  AGRGIGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            GRG  KT   A M       R        I+C       L+ +   EV + +       
Sbjct: 29  GGRGSAKTRTFALMTAVWALRRDQAGDSGVILCAREYMNSLEESSLEEVKQAIR------ 82

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                      + W                      ++  R +          +  + +E
Sbjct: 83  ----------STSWLEPHFVIGEKFIKTKSGRISYVFAGLRHNLDSIKSKARILLAWVEE 132

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL-EDWKRYQIDTRTV 258
           A    ++  + +     E N    W+   N  +        F   + E+ K  +++    
Sbjct: 133 AETVSEVAWQKLEPTVREHNSE-IWVTW-NPEKRGSATDLRFRRHVPENAKIIEMNYSDN 190

Query: 259 EGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317
                   +  ++     D    R    G + +Q         Y E  +  E   D   P
Sbjct: 191 PWFPKELEQTRLADKARLDDATYRWIWEGAYLEQSEAQIFRDKYQE--LEFEPNPDFDGP 248

Query: 318 LIMGCDIAGEGGDKTVV---VFRRGN 340
              G D  G   D T         G+
Sbjct: 249 YY-GLDF-GFANDPTAAIKCWVFDGD 272


>gi|83943081|ref|ZP_00955541.1| hypothetical protein EE36_12908 [Sulfitobacter sp. EE-36]
 gi|83846089|gb|EAP83966.1| hypothetical protein EE36_12908 [Sulfitobacter sp. EE-36]
          Length = 259

 Score = 84.2 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/264 (12%), Positives = 70/264 (26%), Gaps = 38/264 (14%)

Query: 48  FSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107
             +P  WQ++ + +           SN         +GR  GK+T    +         G
Sbjct: 29  IGEPDAWQVDLLRS--------DPRSNEADRMILALSGRQSGKSTTAGGLG--YDDFSRG 78

Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
            ++I  A S  Q    L+  + ++ +  P                      +  +    +
Sbjct: 79  KTVILTAPSLRQSTE-LFRRILEYKNTDPFC-------------PPIVRQTQTELEAHPR 124

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
           H                          +  DEA    D    +      E        + 
Sbjct: 125 H------GGRIIVVPATDQARGMTADTIIADEACFLDDDALTAFFPMRKETGR---IFLL 175

Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
           S      G+FY+ +    +  +R    +  +    +        +  +     R E L +
Sbjct: 176 STPNMRQGYFYETWTSA-KRVRRITARSIDIPRRKAQVEFD---KATMSEATFRREHLCE 231

Query: 288 FPQQEVNNFIPHNYIEEAMSREAI 311
           F        +    +E+A +    
Sbjct: 232 FI-GAGTPLVSWEALEKASNPNVK 254


>gi|145579924|pdb|2O0H|A Chain A, T4 Gp17 Atpase Domain Mutant Complexed With Atp
 gi|145579925|pdb|2O0J|A Chain A, T4 Gp17 Atpase Domain Mutant Complexed With Adp
 gi|145579926|pdb|2O0K|A Chain A, T4 Gp17 Atpase Domain Mutant
          Length = 385

 Score = 84.2 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/306 (11%), Positives = 84/306 (27%), Gaps = 52/306 (16%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + R     Q   + + E     +C      F   +         +        +Q + ++
Sbjct: 118 LKRANIKTQWTREMVEEWK---KCRDDIVYFAETYCAITHIDYGVIKVQ-LRDYQRDMLK 173

Query: 61  AVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
            +                +  +    R +GKTT+ A  +   +      ++  +A+  + 
Sbjct: 174 IMS-------------SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSM 220

Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
               L     + + +LP                   E  + S+ +D+             
Sbjct: 221 SAEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSI-------GA 261

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
              +           ++ ++ +  P+      +I    +    ++  I+ + T      F
Sbjct: 262 YASSPDAVRGNSFAMIYIEDCAFIPNFHDSWLAIQPVISSGRRSK--IIITTTPNGLNHF 319

Query: 238 YDIFNIPLED----------WKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
           YDI+   +E           W   +       +  D G+   I +  G      R E   
Sbjct: 320 YDIWTAAVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSSLAQFRQEHTA 379

Query: 287 QFPQQE 292
            F    
Sbjct: 380 AFEGTS 385


>gi|260427953|ref|ZP_05781932.1| phage DNA Packaging Protein [Citreicella sp. SE45]
 gi|260422445|gb|EEX15696.1| phage DNA Packaging Protein [Citreicella sp. SE45]
          Length = 409

 Score = 83.8 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 87/297 (29%), Gaps = 37/297 (12%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134
            I  GRG GKT   A  +   +             +  I  +  Q++  +    S  ++ 
Sbjct: 15  VIMGGRGAGKTRAGAEWVRACVEGAMPLSPGRCKRVALIGETMDQVREVMVFGESGIMNC 74

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
            P     E Q+                                        G       A
Sbjct: 75  SPPDRRPEWQATRRCL------------------VWPNGAEAMVFSAHDPEGLRGPQFDA 116

Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
            + DE +           +          +  +    T R  G   ++  +P        
Sbjct: 117 AWVDELAKWKKARETWDMLQFALRLGEHPQVCVT--TTPRNVGILKELLELPST-VVTRA 173

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
                   +   F E + +RYG +S +AR E+ G               ++ A +  A  
Sbjct: 174 KTEANRANLAESFLEEVRARYG-NSRLARQELDGILVTDVDGALWTGEMLDRAQAL-APP 231

Query: 313 DLYAPLIMGCD-IAGEG--GDKTVVVFRRGNIIE-HIFDWSAKLIQETNQEG-CPVG 364
             +  +++  D  AG+G   D   +V   G + E     W A ++++ + +G  P G
Sbjct: 232 ATFDRIVVAVDPPAGDGKASDACGIVVA-GVVCEGPPQAWRAWVLEDASVQGVSPTG 287


>gi|307544683|ref|YP_003897162.1| hypothetical protein HELO_2093 [Halomonas elongata DSM 2581]
 gi|307216707|emb|CBV41977.1| K06909 [Halomonas elongata DSM 2581]
          Length = 531

 Score = 83.8 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 72/269 (26%), Gaps = 22/269 (8%)

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
           R +G + L   +   +    PGM++   +  E  +                 +  FE   
Sbjct: 101 RDMGMSWLTIGLGCTVCLHHPGMAVGFGSRKEEYVDKIGSP-----------KSLFEKAR 149

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP-HNTHGMAVFNDEASGTP 204
             +           +          +   T S    ++  G            DE++   
Sbjct: 150 SFMSMLPREFRGGWERKRHAPHMRIMFPETESVMTGESGDGIGRGDRTGFYIVDESAFLE 209

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264
                      T           S    +   F    +        +    R     D  
Sbjct: 210 RPHLVDASLSATTNCRQD----VSTPNGMGNPFAQRRH--SGKISVFTFHWRDDPRKDDA 263

Query: 265 FHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGC 322
           ++   +     D      EI   +        IP  +++ A+        ++    +   
Sbjct: 264 WYAKQVDEL--DPVTVAQEIDINYSASVEGVLIPSAWVQAAVDAHKKLGIEITGERLGAL 321

Query: 323 DIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
           D+A EG D+     R G +++ + +W+ K
Sbjct: 322 DVADEGKDQNAYAGRHGILLDLVDEWTGK 350


>gi|149913871|ref|ZP_01902403.1| hypothetical protein RAZWK3B_17748 [Roseobacter sp. AzwK-3b]
 gi|149812155|gb|EDM71986.1| hypothetical protein RAZWK3B_17748 [Roseobacter sp. AzwK-3b]
          Length = 419

 Score = 83.8 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/297 (12%), Positives = 71/297 (23%), Gaps = 35/297 (11%)

Query: 70  VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNT 123
                       I  GRG GKT   A  +   +             +  +  +  Q++  
Sbjct: 15  QVPPEGDWRNWVILGGRGAGKTRAGAEWVRAQVEGARPLSEGLCRRMALVGETIDQVREV 74

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
           +    S  ++  P     + Q+                                      
Sbjct: 75  MIFGESGIMACSPPDRRPDWQATRKRL------------------VWPNGAVAQAFSAHE 116

Query: 184 FVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
                       + DE +           +       +  +  I    T R  G   D+ 
Sbjct: 117 PEALRGPQFDGAWVDEMAKWKKARDTWDMLQFGLRLGDHPQVCIT--TTPRNVGVLKDLL 174

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301
                              +   F E + +RY     + R E+ G    +       ++ 
Sbjct: 175 EQKST-VVTSAPTEANRAFLAQSFLEEVRARYAGT-RLGRQELDGVLLSEAEGALWTNSG 232

Query: 302 IEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
           IE    R         +++  D       G D+  +V         + DW A ++ +
Sbjct: 233 IEAC--RVDNLPELDRIVVAIDPPVTGRAGSDECGIVVAGAVTRGPVQDWRAYVLAD 287


>gi|84517307|ref|ZP_01004661.1| putative large terminase [Loktanella vestfoldensis SKA53]
 gi|84508787|gb|EAQ05250.1| putative large terminase [Loktanella vestfoldensis SKA53]
          Length = 426

 Score = 83.5 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/285 (11%), Positives = 73/285 (25%), Gaps = 30/285 (10%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
            I  GRG GKT   A  +   +       I  +  +  Q +  +    S  +++ P    
Sbjct: 40  VILGGRGAGKTRAGAEWVR-RMVASGARRIAVVGETYHQAREVMVFGDSGIMAVCPPDAR 98

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
            +  +                               +                A + DE 
Sbjct: 99  PKWIATRQML------------------VWPNGAQATLFSAQDPEALRGPQFDAAWVDEL 140

Query: 201 SGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
           +           +       +  R  +    T R       + + P      +   +   
Sbjct: 141 AKWRKAAATWDMLQFGLRLGDAPRVCVT--TTPRRQALLRKLLDRPST-VVTHAPTSANR 197

Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
             +   F   + + Y     + R E+ G               +       A       +
Sbjct: 198 ANLADSFLAEMTAEYAGT-ALGRQELEGVMLDDVDGALWQMGALAACQVDRAPP--LTRI 254

Query: 319 IMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360
           ++  D    A  G D   ++     +   + DW A ++++ + +G
Sbjct: 255 VVAIDPPTTAHAGSDACGIIVAGVVMAGPVQDWRAYVLEDASLQG 299


>gi|78043214|ref|YP_360500.1| prophage LambdaCh01, PBSX family terminase large subunit
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|77995329|gb|ABB14228.1| prophage LambdaCh01, terminase, large subunit, PBSX family
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 420

 Score = 83.5 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/249 (13%), Positives = 71/249 (28%), Gaps = 23/249 (9%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
            +  GRG GK++  +  ++  +   P  + + +   +  LK++++ ++   +  L    +
Sbjct: 30  WLKGGRGSGKSSFASIEIILGMMKDPNANAVVLRKVKETLKDSVFEQLIWAIEKLKVSDY 89

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF---N 197
                       W  +     M        I  R   + +          +   ++    
Sbjct: 90  ------------WDIKHNPMEMTYIPTGQKILFRGADKPKKIRSTKVSKGYIKFIWYEEV 137

Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG-WFYDIFNIPLEDWKRYQIDTR 256
           DE +G      + I               T N       W  +   I   D K +     
Sbjct: 138 DEFNGM--EEIRIINQSLMRGGEQFVVFYTYNPPNRVNAWVNEEILIERPDRKVHHSTYL 195

Query: 257 TVE--GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314
           TV    +   F         ++    R E LG+           +  I +    +     
Sbjct: 196 TVPREWLGEQFLIEAEHLKRINERAYRHEYLGE-ITGTGGEIFSNITIRK--ITDDEIKA 252

Query: 315 YAPLIMGCD 323
           +  +  G D
Sbjct: 253 FDRIRRGID 261


>gi|254474412|ref|ZP_05087798.1| phage DNA Packaging Protein [Ruegeria sp. R11]
 gi|214028655|gb|EEB69490.1| phage DNA Packaging Protein [Ruegeria sp. R11]
          Length = 417

 Score = 83.5 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 44/295 (14%), Positives = 80/295 (27%), Gaps = 43/295 (14%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134
            I  GRG GKT   A  +  L              I  +  +  Q+++ +    S  L+ 
Sbjct: 24  VILGGRGAGKTRAGAEWVRALAEGSTPLSAGRARRIALLGETYDQVRDVMVQGDSGILAC 83

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
            P     + ++                             T                  A
Sbjct: 84  TPPDRRPQWKATERRL------------------IWPNGATAQAFSAHDPEALRGPQFDA 125

Query: 195 VFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
            + DE +           +          R  +    T R      D+   P    + + 
Sbjct: 126 AWADELAKWKRGQDSWDMLQFALRLGTDPRVCVT--TTPRNVSVLRDLLASPST-VQTHA 182

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
                   + + F E + +RY   S + R E+ G   Q        +  +  A  R A  
Sbjct: 183 ATEANRANLATSFIEEVRNRYAG-SRLGRQELDGVLLQDVEGALWCNAGLVGAQVRSAPP 241

Query: 313 DLYAPLIMGCDI---AGEGGDKTVV----VFRRGNIIEHIFDWSAKLIQETNQEG 360
                +++  D    AG+  D   +       +G       DW A ++ +   +G
Sbjct: 242 --LDRVVVAVDPAVSAGKSSDACGILVVGAVLQGPP----QDWRAYVLADCTVQG 290


>gi|168820654|ref|ZP_02832654.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|205342611|gb|EDZ29375.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
          Length = 539

 Score = 83.1 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 50/367 (13%), Positives = 107/367 (29%), Gaps = 44/367 (11%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIKGKP--LEHFSQ---- 50
           P  I   +   + L  +    E + + + F           WG+   P  L++       
Sbjct: 12  PDYIQVFEWRMERLQRIRKAPETLPALRQFYRTNPAQFIIDWGMTTDPRNLDYGLPVTIP 71

Query: 51  ----PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
               P   Q E+++ +     ++ N              R +G +  +  +   L     
Sbjct: 72  FLLFPR--QEEWIDWIMERSRNHENGLTEKS--------REMGLSWTSVGLASALCLFNR 121

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
            M I   +  E  + +T+  +     ++      F     +    GW      + M ++ 
Sbjct: 122 EMVIGFGSRKEEYVDSTVDPK-----ALFWKVRKFIATLPAEFRGGWDERKHSRFMSVEF 176

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
                  +  + +                F DEA+     +        T        I 
Sbjct: 177 PDTGAVIKGEAGDNIG-----RGDRTTLYFVDEAAFLQRPLLIDAALSQTTRCR----ID 227

Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
            S+   +N  F    +        +    R+    D  ++     +   +  +   E+  
Sbjct: 228 LSSVNGMNNPFAQKRH--SGKISVFTFHWRSDPRKDDEWYRKECEKI-DNPIIVAQELDL 284

Query: 287 QFPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEH 344
            +        IP  +++ A+              +   D+A EG DK     R G ++  
Sbjct: 285 NYQASAEGILIPSEWVQAAVDAHIKLGIQPSGQRLGAMDVADEGRDKNACSLRYGFLLSD 344

Query: 345 IFDWSAK 351
           + +WS K
Sbjct: 345 VQEWSGK 351


>gi|312262635|gb|ADQ52930.1| gp17 terminase DNA packaging enzyme large subunit [Aeromonas phage
           PX29]
          Length = 406

 Score = 82.7 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 81/271 (29%), Gaps = 52/271 (19%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFV-----MRFFPWGIKGKPLEHFSQPHRWQ 55
           + R     +   + + E      C      F      +    WG+    L        +Q
Sbjct: 114 LKRANVPTKWTREMVEEWK---RCRDDIVYFAETYCSIIHIDWGVIKVQL------RDYQ 164

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
            + +  +         ++ P          R +GKTT  A  +   +      ++  +A+
Sbjct: 165 KDMLRIMAT--ERMSIHNLP----------RQLGKTTATAIFLTHFVVFNEAKAVGVLAH 212

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
                K  L     + + +LP                   E  + ++ +++         
Sbjct: 213 KGDMSKEVLER-TKQSIELLPD-----------FLQPGIVEWNKGNIELENGCSI----- 255

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRL 233
                  +           ++ DEA+     D   K+IL   +    +R  I+ ++T   
Sbjct: 256 --GAYASSPDAVRGNSFALIYLDEAAFIENFDDTWKAILPVISSGRKSR--IILTSTPNG 311

Query: 234 NGWFYDIFN---IPLEDWKRYQIDTRTVEGI 261
              +YD++       + +K Y     TV+  
Sbjct: 312 INHWYDLWEVSINSDKGFKPYTTTWITVKER 342


>gi|315518961|dbj|BAJ51838.1| putative packaging maturation protein B [Ralstonia phage RSB2]
          Length = 593

 Score = 82.7 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 53/415 (12%), Positives = 101/415 (24%), Gaps = 87/415 (20%)

Query: 5   ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64
           +S  +KL+++  E L+H      F+ FV     W +   P      P   Q +    +  
Sbjct: 1   MSDLKKLQRDTKEALLHKRMQEDFRVFVWFV--WKVINLP-----NPTEIQNDMSHTLQ- 52

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124
                    NP   +  I   RG+ K+ +    ++W +   P + I+ ++ S+ +     
Sbjct: 53  ---------NPPSRRFIIQGFRGVAKSFITCAYVVWRLWKDPQLKIMIVSASKERADANS 103

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY-------- 176
                    +    H             +             K   IT +          
Sbjct: 104 AFIKKIISEIHFLNHLKAKTGQVDTMIKFDVGPKLPDHSPSVKSVGITGQLTGSRADIII 163

Query: 177 --SEERPDTFVGPHNTHGMAVFNDEASGT------------PDIINKSILGFFTELNPNR 222
               E P           +     E                P                  
Sbjct: 164 ADDVEVPGNSSTQGARDKLFELVKEFDAILKPGGSVIYLGTPQNEMSLYNELLNRGYTTL 223

Query: 223 FWIMTSNTRR---LNGWFYDIFNIPLEDWKR----YQIDTRTVEGIDSGFHEGIISRYGL 275
            W      R       +   +     E +              E  D          YG 
Sbjct: 224 IWPARY-PRDDKQRANYGSRLAPYLAEKYDADPQGLAWKPTDPERFDEQDLLEREVSYGK 282

Query: 276 DSDVARIEILG------QFPQQEVNNFIPHNYIEEA-MSREAIDDL-------------- 314
              + +  +        ++P +  +  +     E A MS + +                 
Sbjct: 283 AGFMLQFMLDTSLSDAEKYPLRLRDLIVAQFGRERAPMSHDWLPGPALEASALPQIGLKG 342

Query: 315 ---YAPL------------IMGCDIAGEGGDKT---VVVFRRG-NIIEHIFDWSA 350
              Y P             ++  D +G G D+T   V+ F  G   +  +  +  
Sbjct: 343 DRYYNPYASAKEMSNYFGKVLAIDPSGRGKDETGYAVMYFLNGYLYLMEVGGFRG 397


>gi|294650848|ref|ZP_06728195.1| bacteriophage terminase large subunit TerL [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292823266|gb|EFF82122.1| bacteriophage terminase large subunit TerL [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 552

 Score = 82.7 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 56/385 (14%), Positives = 110/385 (28%), Gaps = 53/385 (13%)

Query: 1   MPRLISTDQKLEQ-ELHEMLMHAECVLSFKNFVMRFFPWGIK------GKPLEHFSQPHR 53
           M R        EQ EL       +C     ++    + W         G P         
Sbjct: 28  MSRRYYYKAVTEQSELSIQAEIYKCKNDPIHWFNH-WIWTYDPRGMSFGLPANIPFVLRP 86

Query: 54  WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113
            Q+E +E +    ++  +          I   R  G + +     L       G +    
Sbjct: 87  KQVELVEWLSERENTQTHG--------LIEKSRDEGMSYVVLGYFLHRWLFVDGFAGGVG 138

Query: 114 ANSETQLKN-----TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
           +  E  +       TL+ +     S +P           + P+G+  ++ +  M I +  
Sbjct: 139 SRKEELVDKKGDPKTLFHKFRDMFSKMPDW---------MKPTGFVEKVHDNYMRIINPD 189

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
              T    + +                F DE +       +++    ++       I  S
Sbjct: 190 NGATITGEAGDNIG-----RGGRTTMYFLDEWAFVERQ--EAVDAAISQNTN--VHIKGS 240

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE--GIDSGFHEGIISRYGLDSDVA------ 280
               +   F+         +  + +  R          ++   I  +             
Sbjct: 241 TPNGIGDRFHQD--RFSGRYAVFSMPWRANPDKNWTVEYNGKQIHPWYEKQLATLDDVVL 298

Query: 281 RIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRR 338
             E+   +        IP  +++ A+        +     I G D+A EG DK     R 
Sbjct: 299 AQEVDINYAASVEGVLIPSTWVQLAIDAHIKLGIEPTGDRIAGLDVADEGKDKNSFASRH 358

Query: 339 GNIIEHIFDWSAK--LIQETNQEGC 361
           G ++ ++  WS K   I  T Q+  
Sbjct: 359 GIVMTYLDTWSGKGDDIFGTTQKAM 383


>gi|119869106|ref|YP_939058.1| phage terminase [Mycobacterium sp. KMS]
 gi|119695195|gb|ABL92268.1| phage Terminase [Mycobacterium sp. KMS]
          Length = 489

 Score = 82.7 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 90/336 (26%), Gaps = 61/336 (18%)

Query: 29  KNFVMRF--FPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR 86
           + FV     F    KG       +P  WQ++ +  V       V    P          R
Sbjct: 27  ERFVKFCEKFLRTPKGTGAREVFRPREWQMDIVRDVLDSGARTVGLMMP----------R 76

Query: 87  GIGKTTLNAWMMLWLISTR-PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
           G GKTTL+A ++L++  TR  G +++  A  E Q     +   ++ + +           
Sbjct: 77  GQGKTTLSAAILLYIFFTRGEGANVVLFAVDERQAS-LAFRVAARMVQLSED-------- 127

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
             L    +           DS +  +     + E             +A   DEA     
Sbjct: 128 --LSSRCYVYADKLVLPLTDSTYQVMPASAAAAE---------GLDYVACLCDEAGVINR 176

Query: 206 IINKSILGFFTELNPNRFWIMTSNT-------------------RRLNGWFYDIFNIPL- 245
            + +               I                               +  F+    
Sbjct: 177 DVFEVAQ-LAQGKRERSVLIAIGTPGPDPNDQVLADLRAYAAEHPDDKSLVWREFSAAGF 235

Query: 246 EDWKRYQIDTRT--VEGIDSGFHEGIIS---RYGLDSDVARIEILGQFPQQEVNNFIPHN 300
           ED               +D   H   +             R   L QF       F+P  
Sbjct: 236 EDHGADCPHCWELANPALDDFLHRDALHALLPPKTREATFRRARLCQFSTDTDGAFLPAG 295

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
             E  +S  +       +++  D +  G D T ++ 
Sbjct: 296 VWE-GLSTSSPVPPGVDVVLALDGSYNG-DTTALLV 329


>gi|254240165|ref|ZP_04933487.1| hypothetical protein PA2G_00806 [Pseudomonas aeruginosa 2192]
 gi|126193543|gb|EAZ57606.1| hypothetical protein PA2G_00806 [Pseudomonas aeruginosa 2192]
          Length = 342

 Score = 82.3 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/254 (10%), Positives = 71/254 (27%), Gaps = 27/254 (10%)

Query: 90  KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLH 149
           K+   A ++L  +  R  + I+C    +  +++++   +  ++  L    ++E+      
Sbjct: 39  KSHGVAQVLL-DMGARNPLRILCAREIQKSMRDSVHRLLRDYIVKLGLTEFYEVLDT--- 94

Query: 150 PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209
                       +   +    +       +               V+ +EA G       
Sbjct: 95  -----------EIRGRNGTLFLFSGL---QGHTVDSIKSFEGVDIVWVEEAQGVCKKSWD 140

Query: 210 SILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTVEGIDSGFHEG 268
            ++    +     +  +  N        Y      P +D    +I+ R         ++ 
Sbjct: 141 VLIPTIRKDGSEIWLTL--NPAMDTDDTYVRFCAAPDDDVWLCEINWRDNPWFPDVLNQE 198

Query: 269 I-ISRYGLDSDVARIEILGQFPQQEVNNFIP---HNYIEEAMSREAIDDLYAPLIMGCDI 324
              ++  +  +       G+               + +E    R    D   P+    D+
Sbjct: 199 RLRAKRSMSQEDYEHIWEGKPRTVAEGAIYRHEILDLMESGRVRPVPYDPLLPVHTVWDL 258

Query: 325 AGEGGDKTVVVFRR 338
                D   + F +
Sbjct: 259 GW--NDAMTIGFVQ 270


>gi|238790716|ref|ZP_04634478.1| Gp33 TerL [Yersinia frederiksenii ATCC 33641]
 gi|238721211|gb|EEQ12889.1| Gp33 TerL [Yersinia frederiksenii ATCC 33641]
          Length = 538

 Score = 82.3 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/366 (13%), Positives = 89/366 (24%), Gaps = 43/366 (11%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNF-----VMRFFPWG--------IKGKPLEHF 48
           P  +   +   + L  +    E +   + F           WG         +G P    
Sbjct: 12  PDYMQVFEWRMERLQRIRQQPEILPIMRAFYKDNPAQFIIDWGMTVDPRNVERGLPARIP 71

Query: 49  SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108
                 Q E++E       +                 R +G + L   M   L     G+
Sbjct: 72  FLLFPKQEEWIEWFVDRWRNAEPGITEKT--------RDMGMSWLTVGMASSLCLFNRGV 123

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
                +  E  +                 +  F+     +                    
Sbjct: 124 FAGFGSRKEEYVDKIGSP-----------KSLFDKARNFISLLPTEFRGGWSLKQHAPHM 172

Query: 169 YTITCRTYSEERPDTFVGP-HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
             +   T S    +   G            DE++              T           
Sbjct: 173 RILFPETESAMTGEAGDGIGRGDRTSFYIVDESAFLERPYLVDASLSATTNCRQD----V 228

Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
           S    +   F +  +      K +    R     D  +++  +     D      EI   
Sbjct: 229 STPNGMANSFAERRH--SGKIKVFTFHWRDDPRKDDAWYQKQVENL--DPVTVAQEIDIN 284

Query: 288 FPQQEVNNFIPHNYIEEAMSRE--AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHI 345
           +        IP  +++ A++             +   DIA EG D      R G ++E I
Sbjct: 285 YSASVEGVLIPSAWVQAAINAHEVLGIVPTGQRLGALDIADEGKDTNSFAGRHGFLLESI 344

Query: 346 FDWSAK 351
            +WS K
Sbjct: 345 EEWSGK 350


>gi|197105675|ref|YP_002131052.1| hypothetical protein PHZ_c2212 [Phenylobacterium zucineum HLK1]
 gi|196479095|gb|ACG78623.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
          Length = 446

 Score = 82.3 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/337 (13%), Positives = 83/337 (24%), Gaps = 49/337 (14%)

Query: 39  GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98
             KG PL    +P   Q+E  E +   C               ++A R  GK  +     
Sbjct: 7   REKGLPLTW--EPRPHQVELWETLVDGCRRAD-----------VAAHRRWGKDEVALQWA 53

Query: 99  LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
                 +PG     +     Q +  +W  V+                +      +   + 
Sbjct: 54  AVEALEKPG-VYWHLLPEAAQGRKAIWDAVN------------PHTGVRRINEAFPIHVR 100

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218
           ++++  + K        +     D +     +    V   E S +       I     E 
Sbjct: 101 KRTLDQEMKVELNNGSVWQVVGSDNYDSLVGSSPRGVVFSEWSLSKPQAWGFIRPILAEN 160

Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLED--WKRYQIDTRTVEGIDSGFHEGIISR---- 272
                W +   T R        F     +  W   +      E       +   +     
Sbjct: 161 GG---WALFLWTPRGRNHATRAFESRQREAGWFCLKSPATDTEVFTKAQLDQERAELIAE 217

Query: 273 ---YGLDSDVARIEILGQFPQQEVNNFIPHNYIE---EAMSREAIDDLYAPLIMGCDIAG 326
                        E L  F       +      E            D  A +    D+  
Sbjct: 218 LGSREEGEARFASEYLVDFDAAAPGAYYATLLGEAERAGRIGRVPWDPAARVDTAWDLG- 276

Query: 327 EGGDKTVVVFRRGNIIEHIF-DWSAKLIQETNQEGCP 362
              D T + F +      +  +  A    ET+ EG P
Sbjct: 277 -IDDYTAIWFFQ-----QVGREVRAIDYFETSGEGLP 307


>gi|159044721|ref|YP_001533515.1| hypothetical protein Dshi_2178 [Dinoroseobacter shibae DFL 12]
 gi|157912481|gb|ABV93914.1| hypothetical protein Dshi_2178 [Dinoroseobacter shibae DFL 12]
          Length = 452

 Score = 82.3 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/267 (13%), Positives = 64/267 (23%), Gaps = 35/267 (13%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134
            I  GRG GKT   A  +   +             +  +  +  Q+++ +    S  L+ 
Sbjct: 59  VILGGRGAGKTRAGAEWVRAEVEGARPLDAGRSRRVALVGETYDQVRDVMIFGESGILAC 118

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
            P     E Q                                     +           A
Sbjct: 119 SPADRKPEWQGTRRQL------------------VWPNGAIAKCHSANDPEALRGPQFDA 160

Query: 195 VFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
            + DE +  P  +     +          R  +    T R +     I        K   
Sbjct: 161 AWVDELAKWPNAEETWDMLQFALRLGVNPRQVVT--TTPRPSTILKQILATGST-VKTTA 217

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
                   + + F E I +RY     + R E+ G               IE         
Sbjct: 218 PTEANRAYLAASFLEEIRARYAGT-RLGRQELDGVLLDDVEGALWTSAGIEANRVETVPP 276

Query: 313 DLYAPLIMGCDI---AGEGGDKTVVVF 336
                +++  D      +G D   +V 
Sbjct: 277 --LDRIVVAVDPPVTGHKGSDACGIVV 301


>gi|71065561|ref|YP_264288.1| PBSX family phage terminase large subunit [Psychrobacter arcticus
           273-4]
 gi|71038546|gb|AAZ18854.1| phage terminase, large subunit, PBSX family [Psychrobacter arcticus
           273-4]
          Length = 421

 Score = 82.3 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/254 (13%), Positives = 65/254 (25%), Gaps = 28/254 (11%)

Query: 84  AGRGIGKTTLNAWMMLW----LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            GRG GKT   A M       L        I+C       L  +   E+ +         
Sbjct: 34  GGRGSGKTRTFALMTAVEGYRLAEAGASGIILCGREFMNSLNESSLEEIKQ--------- 84

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                  ++    W  +  E                ++  R +       +  +  + DE
Sbjct: 85  -------AIKSVSWLNDYYEIGEKYIRTKNRRVAYAFTGLRHNLDSIKGKSRILLAWVDE 137

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
           A    +   + +L    E +    WI   N           F     ++   +++     
Sbjct: 138 AENVSEAAWRKLLPTVREDDSEV-WITW-NPENKGSATDKRFRQVEHEF-IVEMNHNDNP 194

Query: 260 GIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
                  +  ++     D    R    G + +          ++     R    +   P 
Sbjct: 195 FFPDVLEQERLNDQENLDDATYRWIWEGAYLEASDAQIFNGKFVVREFERHPTWN--GPY 252

Query: 319 IMGCDIAGEGGDKT 332
             G D  G   D T
Sbjct: 253 N-GLDF-GFSTDPT 264


>gi|260556808|ref|ZP_05829026.1| P-loop protein [Acinetobacter baumannii ATCC 19606]
 gi|260410067|gb|EEX03367.1| P-loop protein [Acinetobacter baumannii ATCC 19606]
          Length = 437

 Score = 82.3 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/298 (12%), Positives = 73/298 (24%), Gaps = 46/298 (15%)

Query: 77  IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI------ICIANSETQLKNTLWAEVSK 130
            F+ A+  GR  GKT L    M          ++         A +  Q K   W  + +
Sbjct: 30  RFRDAVC-GRRFGKTFLAKAEMRRAARLAQKWNVSVEDEIWYAAPTFKQAKRVFWKRLKQ 88

Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
            +              ++                       T         D +     +
Sbjct: 89  AIPPSWRFGKPNETECTITLK--------------------TGHVIRVVGLDNYDDLRGS 128

Query: 191 HGMAVFNDEASGTPDIIN-KSILGFFT-------ELNPNRFWIMTSNTRRLNGWFYDIFN 242
               +  DE +        + +    +        +      ++   T +     YD + 
Sbjct: 129 GLFFLIIDEWADCKWAAWEEVLRPMLSTCKYTVNGVQRVGGNVLRIGTPKGYNHCYDTWM 188

Query: 243 IPLE----DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIP 298
                   D K +   +     I     +    +   D    R E    F   +   +  
Sbjct: 189 DGQNGREPDHKSWIYTSLQGGNIPESEIDVARRKM--DPKTFRQEYEASFETYQGVIYYC 246

Query: 299 HNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQET 356
                    +         L +G D   +     VV  R G  +  + ++  K + +T
Sbjct: 247 FERTFNCTEKVVK--EGDVLHIGMDFNVQ-KMAAVVYVRDGEELYAVGEF--KDLFDT 299


>gi|168467237|ref|ZP_02701079.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Newport str.
           SL317]
 gi|195630466|gb|EDX49092.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Newport str.
           SL317]
          Length = 539

 Score = 82.3 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/367 (13%), Positives = 106/367 (28%), Gaps = 44/367 (11%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIKGKP--LEHFSQ---- 50
           P  +   +   + L  +    E + + + F           WG+   P  L++       
Sbjct: 12  PDYVQVFEWRMERLQRIRKAPETLPALRQFYRTNPAQFIIDWGMTTDPRNLDYGLPVTIP 71

Query: 51  ----PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
               P   Q E+++ +     +  N              R +G +  +  +   L     
Sbjct: 72  FLLFPR--QEEWIDWIIERSRNQENGLTEKS--------REMGLSWTSVGLASALCLFNR 121

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
            M I   +  E  + +T+  +     ++      F     +    GW      + M ++ 
Sbjct: 122 EMVIGFGSRKEEYVDSTVDPK-----ALFWKVRKFIATLPAEFRGGWDERKHSRFMSVEF 176

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
                  +  + +                F DEA+     +        T        I 
Sbjct: 177 PDTGAVIKGEAGDNIG-----RGDRTTLYFVDEAAFLQRPLLIDAALSQTTRCR----ID 227

Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
            S+   +N  F    +        +    R+    D  ++     +   +  +   E+  
Sbjct: 228 LSSVNGMNNPFAQKRH--SGKIPVFTFHWRSDPRKDDEWYRKECEKI-DNPIIVAQELDL 284

Query: 287 QFPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEH 344
            +        IP  +++ A+              +   D+A EG DK     R G ++  
Sbjct: 285 NYQASAEGILIPSEWVQAAVDAHIKLGIQPSGQRLGAMDVADEGRDKNACSLRYGFLLSD 344

Query: 345 IFDWSAK 351
           + +WS K
Sbjct: 345 VQEWSGK 351


>gi|56697127|ref|YP_167490.1| terminase, large subunit, putative [Ruegeria pomeroyi DSS-3]
 gi|56678864|gb|AAV95530.1| terminase, large subunit, putative [Ruegeria pomeroyi DSS-3]
          Length = 408

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/291 (13%), Positives = 76/291 (26%), Gaps = 35/291 (12%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134
            I  GRG GKT   A  +   +             +  +  +  Q+++ +    S  L+ 
Sbjct: 15  VILGGRGAGKTRAGAEWVRARVEGSRPLDAGRARRVALVGETYDQVRDVMVFGESGILAC 74

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
            P       ++                                        G       A
Sbjct: 75  SPPDRRPNWKASERKL------------------IWPNGAEAQAFSAQDPEGLRGPQFDA 116

Query: 195 VFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
            + DE +           +          +  +    T R      D+   P    + + 
Sbjct: 117 AWVDELAKWKKAGETWDMLQFALRLGERPQVCVT--TTPRNVKLLKDLLAAPST-VQTHA 173

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
                   +   F E + +RY     + R E+ G               ++ A  R +  
Sbjct: 174 PTEANRANLAESFLEEVRARYAGT-RLGRQELDGVLLADAEGALWTAEMLDRA--RTSSV 230

Query: 313 DLYAPLIMGCDIAGEG---GDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360
                +++  D +  G   GD   +V     +     DW A ++ +   +G
Sbjct: 231 PELDRVVVALDPSVSGGASGDACGMVVVGAQMQGPPQDWRAWVLADRTVQG 281


>gi|167553969|ref|ZP_02347711.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205321713|gb|EDZ09552.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
          Length = 539

 Score = 81.9 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/367 (13%), Positives = 107/367 (29%), Gaps = 44/367 (11%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIKGKP--LEHFSQ---- 50
           P  +   +   + L  +    E + + + F           WG+   P  L++       
Sbjct: 12  PDYVQVFEWRMERLQRIRKAPETLPALRQFYRTNPAQFIIDWGMTTDPRNLDYGLPVTIP 71

Query: 51  ----PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
               P   Q E+++ +     ++ N              R +G +  +  +   L     
Sbjct: 72  FLLFPR--QEEWIDWIMERSRNHENGLTEKS--------REMGLSWTSVGLASALCLFNR 121

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
            M I   +  E  + +T+  +     ++      F     +    GW      + M ++ 
Sbjct: 122 EMVIGFGSRKEEYVDSTVDPK-----ALFWKVRKFIATLPAEFRGGWDERKHSRFMSVEF 176

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
                  +  + +                F DEA+     +        T        I 
Sbjct: 177 PDTGAVIKGEAGDNIG-----RGDRTTLYFVDEAAFLQRPLLIDAALSQTTRCR----ID 227

Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
            S+   +N  F    +        +    R+    D  ++     +   +  +   E+  
Sbjct: 228 LSSVNGMNNPFAQKRH--SGKIPVFTFHWRSDPRKDDEWYHKECEKI-DNPIIVAQELDL 284

Query: 287 QFPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEH 344
            +        IP  +++ A+              +   D+A EG DK     R G ++  
Sbjct: 285 NYQASTEGILIPSEWVQAAVDAHIKLGIQPSGQRLGAMDVADEGRDKNACSLRYGFLLSD 344

Query: 345 IFDWSAK 351
           + +WS K
Sbjct: 345 VQEWSGK 351


>gi|291335343|gb|ADD94958.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C148]
          Length = 234

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 62/178 (34%), Gaps = 11/178 (6%)

Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP-DIINK 209
                  ++     D K   +   T   +  +  +         V  DEA+    ++  +
Sbjct: 12  KLVPKPWIKTKNETDLKLELVNGSTIELKGTENAMALRGRSLSGVVLDEAAFMDAEVWFE 71

Query: 210 SILGFFTELNPNRFWIMTSNTRRLNGWFYDIF----NIPLEDWKRYQIDTRTVEGIDSGF 265
            I       +   + +  S       WFYD++    + P  +WKR+   T     +    
Sbjct: 72  VIRPALA--DKQGWALFISTPDGTASWFYDLWCYCEDDPTNEWKRWCYTTIEGGNVPQEE 129

Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
            E   ++   D    R E    F  + +   +  ++ ++ +S +A D    PL++G D
Sbjct: 130 VEAARAQL--DPRTFRQEFEASF--ENLTGLVAISFSDDNISTDAKDISIQPLLLGVD 183


>gi|291337121|gb|ADD96636.1| hypothetical protein Syncc9605_0456 [uncultured organism
           MedDCM-OCT-S12-C92]
          Length = 354

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 69/208 (33%), Gaps = 16/208 (7%)

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP-D 205
            +         +      D +   I   T   +  +  +         V  DEA+    +
Sbjct: 8   RVLKKLVPKVWIRTKNETDLRIELINGSTIELKGTENAMALRGRSLSGVVLDEAAFMDAE 67

Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF----NIPLEDWKRYQIDTRTVEGI 261
           +  + I       +   + +  S       WFYD++    +    +W+R+   T     +
Sbjct: 68  VWFEVIRPALA--DKEGWALFISTPDGTASWFYDLWCYVPDDETNEWQRWSYTTIDGGNV 125

Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMG 321
                E   ++   D+   R E    F  + +   +  ++ ++ +S EA D    PL++G
Sbjct: 126 SKHEVEAARAQL--DTRTFRQEFEASF--ENLTGLVAISFSDDNISTEAKDISIQPLLLG 181

Query: 322 CDIAGEGGD-KTVVV-FRRGNIIEHIFD 347
            D      D  + +   + G  +    +
Sbjct: 182 VD---FNVDPMSGICAVKNGETLYVFDE 206


>gi|191172603|ref|ZP_03034142.1| gp33 TerL [Escherichia coli F11]
 gi|190907076|gb|EDV66676.1| gp33 TerL [Escherichia coli F11]
 gi|324014340|gb|EGB83559.1| hypothetical protein HMPREF9533_01599 [Escherichia coli MS 60-1]
          Length = 540

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/364 (12%), Positives = 93/364 (25%), Gaps = 40/364 (10%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIK--------GKPLEHF 48
           P      +   + L  +  + E + + K F           WG+         G P+   
Sbjct: 12  PDYQMVFEWRMERLQRIRQNPEILPALKQFYRTNPAQFIIDWGMTTDPRNIDYGLPVTIP 71

Query: 49  SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108
                 Q E++  +     +  N              R +G +     +   L      M
Sbjct: 72  FLLFPKQEEWIYWIMERWGNRENGITEKS--------REMGLSWTAIGLACSLCLFNKEM 123

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            I   +  E  + ++     + +           ++         +A  +          
Sbjct: 124 VIGFGSRKEEYV-DSTGDPKALFWKARKFVETLPVEFRGSWSEKKHAPYMRVEFP----- 177

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
                     +                  DEA+     +        T        I  S
Sbjct: 178 ----ETGAVIKGEAGDNIGRGDRTTLYLVDEAAFLQRPLLIDAALSQTTRCR----IDLS 229

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
           +   +   F    +        +    R     D  ++     +   +  V   E+   +
Sbjct: 230 SVNGMANPFAQKRHGGK--IPVFTFHWRDDPRKDEEWYRRECEKI-DNPVVVAQELDLNY 286

Query: 289 PQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
                   IP  +++ A+              +   D+A EG DK     R G ++E++ 
Sbjct: 287 SASAEGVLIPSEWVQAAVDAHIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVR 346

Query: 347 DWSA 350
           +WS 
Sbjct: 347 EWSG 350


>gi|330910791|gb|EGH39301.1| phage terminase, large subunit [Escherichia coli AA86]
          Length = 540

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/356 (11%), Positives = 86/356 (24%), Gaps = 24/356 (6%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIKGKPLEHFSQPHRWQL 56
           P      +   + L  +  + E + + K F           WG+   P            
Sbjct: 12  PDYQMVFEWRMERLQRIRQNPEILPALKQFYRTNPAQFIIDWGMTTDPRNIDYGLPVTIP 71

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
             +          +               R +G +     +   L      M I   +  
Sbjct: 72  FLLFPKQEEWIHWIMERWGNRENGITEKSREMGLSWTAIGLACSLCLFNKEMVIGFGSRK 131

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
           E  + ++     + +           ++         +A  +                  
Sbjct: 132 EEYV-DSTGDPKALFWKARKFVETLPVEFRGSWSEKKHAPYMRVEFP---------ETGA 181

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
             +                  DEA+     +        T        I  S+   +   
Sbjct: 182 VIKGEAGDNIGRGDRTTLYLVDEAAFLQRPLLIDAALSQTTRCR----IDLSSVNGMANP 237

Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
           F    +        +    R     D  ++     +   +  V   E+   +        
Sbjct: 238 FAQKRHGGK--IPVFTFHWRDDPRKDEEWYRRECEKI-DNPVVVAQELDLNYSASAEGVL 294

Query: 297 IPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
           IP  +++ A+              +   D+A EG DK     R G ++E++ +WS 
Sbjct: 295 IPSEWVQAAVDAHIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSG 350


>gi|49475449|ref|YP_033490.1| terminase large subunit protein [Bartonella henselae str.
           Houston-1]
 gi|49475495|ref|YP_033536.1| terminase large subunit protein [Bartonella henselae str.
           Houston-1]
 gi|49238255|emb|CAF27468.1| Terminase large subunit protein [Bartonella henselae str.
           Houston-1]
 gi|49238301|emb|CAF27516.1| Terminase large subunit protein [Bartonella henselae str.
           Houston-1]
          Length = 340

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/263 (11%), Positives = 66/263 (25%), Gaps = 30/263 (11%)

Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
            +I+C    +  L  +   E+ + +                    +Y         ID +
Sbjct: 16  GTILCARQFQNSLAESSLEEIKRAIE------------GHDFLKDYYKVGESSIKSIDGR 63

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN---PNRFW 224
                   +S    +          +  + DEA    +   ++++    E         W
Sbjct: 64  ----IAFQFSGLDRNIASIKSMGRILLCWVDEAEPVTETAWQTLIPTLREEGEGWRAELW 119

Query: 225 IMTSNTRRLNGWFYDIFNIPLED-WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283
           +   N  R N      F     +  KR +I+           +E  +       +  +  
Sbjct: 120 VTW-NPLRDNAPVERRFRFSNNEAIKRVEINWSDNPKFPKILNEARLDDLKNRPETYKHI 178

Query: 284 ILGQFPQQEVNNFIPHNYI---EEAMSREAIDDLYAPLIMGCDIAGEG--GDKTVVVFRR 338
             G +       +     +   +E        D    +    DI G G   D T +   +
Sbjct: 179 WEGAYLTAIQGAYYQKEMLAAEQEGRIGRVARDPLMQMRAFWDIGGTGAKADATAIWIAQ 238

Query: 339 GNIIEHIFDWSAKLIQETNQEGC 361
                   +       E   +  
Sbjct: 239 ----FVGREIRVLDYYEAQGQPL 257


>gi|85709622|ref|ZP_01040687.1| Phage DNA Packaging Protein [Erythrobacter sp. NAP1]
 gi|85688332|gb|EAQ28336.1| Phage DNA Packaging Protein [Erythrobacter sp. NAP1]
          Length = 441

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 74/281 (26%), Gaps = 32/281 (11%)

Query: 66  CHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124
              +        ++   I AGRG GKT   A  +  +  +     I  +++S  + +  +
Sbjct: 38  IARSAQLPPDGEWRVWLIMAGRGFGKTRAGAEWVRSIAESHSEARIALVSSSLAEARAVM 97

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
               S  L+  P     E +                                        
Sbjct: 98  VEGESGLLACSPPDRRPEFEPSLRRVR------------------FPNGAEAHLYSAGEP 139

Query: 185 VGPHNTHGMAVFNDEASGTP------DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
                      + DE    P           ++L      +  R  I  + T R      
Sbjct: 140 EALRGPQFSHAWCDEVGKWPISHSRATRAWDNLLMGLRLGDDPR--IAVTTTPRAVPLVQ 197

Query: 239 DIFNIPLEDWKRY-QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297
            +            +  T              I+     S + R EI G+  +       
Sbjct: 198 RLLKQETSQATAVTRGSTYDNSANLPARFLEAIADEFAGSQLGRQEIEGELIEDIEGALW 257

Query: 298 PHNYIEEAMSREAIDDLYAPLIMGCDI--AGEGGDKTVVVF 336
             + +E++   EA    +  +++G D   +  G D+  +V 
Sbjct: 258 SRSLLEQSKE-EAGPPGFRRIVIGVDPPTSSTG-DECGIVV 296


>gi|300824951|ref|ZP_07105051.1| conserved hypothetical protein [Escherichia coli MS 119-7]
 gi|300522580|gb|EFK43649.1| conserved hypothetical protein [Escherichia coli MS 119-7]
          Length = 540

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/364 (12%), Positives = 93/364 (25%), Gaps = 40/364 (10%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIK--------GKPLEHF 48
           P      +   + L  +  + E + + K F           WG+         G P+   
Sbjct: 12  PDYQMVFEWRMERLQRIRQNPEILPALKQFYRTNPAQFIIDWGMTTDPRNIDYGLPVTIP 71

Query: 49  SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108
                 Q E++  +     +  N              R +G +     +   L      M
Sbjct: 72  FLLFPKQEEWIHWIMERWSNRENGITEKS--------REMGLSWTAIGLACSLCLFNKEM 123

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            I   +  E  + ++     + +           ++         +A  +          
Sbjct: 124 VIGFGSRKEEYV-DSTGDPKALFWKARKFVETLPVEFRGSWSEKKHAPYMRVEFP----- 177

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
                     +                  DEA+     +        T        I  S
Sbjct: 178 ----ETGAVIKGEAGDNIGRGDRTTLYLVDEAAFLQRPLLIDAALSQTTRCR----IDLS 229

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
           +   +   F    +        +    R     D  ++     +   +  V   E+   +
Sbjct: 230 SVNGMANPFAQKRHGGK--IPVFTFHWRDDPRKDEEWYRRECEKI-DNPVVVAQELDLNY 286

Query: 289 PQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
                   IP  +++ A+              +   D+A EG DK     R G ++E++ 
Sbjct: 287 SASAEGVLIPSEWVQAAVDAHIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVR 346

Query: 347 DWSA 350
           +WS 
Sbjct: 347 EWSG 350


>gi|169633984|ref|YP_001707720.1| putative bacteriophage protein; putative prophage terminase large
           subunit [Acinetobacter baumannii SDF]
 gi|169152776|emb|CAP01795.1| putative bacteriophage protein; putative prophage terminase large
           subunit [Acinetobacter baumannii]
          Length = 552

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/299 (15%), Positives = 92/299 (30%), Gaps = 41/299 (13%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN-----TLWAEVSKWLSMLP 136
           I   R  G + +     L       G +    +  E  +       TL+ +     S +P
Sbjct: 107 IEKSRDEGMSYVVLGFFLHRWLFVEGFAGGVGSRKEELVDKKGDPKTLFHKFRDMFSKMP 166

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
                      L P G+  ++ +  M I +     T    + +                F
Sbjct: 167 QW---------LKPKGFVEKVHDNYMRIINPDNGATITGEAGDNIG-----RGGRTTMYF 212

Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256
            DE +       +++    ++       I  S    +   F+         +  + +  R
Sbjct: 213 LDEWAFV--EQQEAVDAAISQNTN--VHIKGSTPNGIGDRFHQD--RFSGRYAVFTMPWR 266

Query: 257 TVEG----------IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306
                         +   ++E  ++    D  V   E+   +        IP  +++ A+
Sbjct: 267 DNPDKNWTVTYNGKVIYPWYEKQLATL--DDVVLAQEVDINYAASVEGVLIPSTWVQAAI 324

Query: 307 S--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK--LIQETNQEGC 361
              ++   +     I G D+A EG DK     R G ++ ++  WS K   I  T Q+  
Sbjct: 325 DAHKKLQIEPTGDRIGGLDVADEGKDKNSFAARHGVVMTYLATWSGKGDDIFGTTQKAM 383


>gi|318064508|gb|ADV36483.1| phage terminase large subunit [Edwardsiella phage eiDWF]
 gi|318064606|gb|ADV36532.1| phage terminase large subunit [Edwardsiella phage eiMSLS]
          Length = 460

 Score = 81.1 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/318 (12%), Positives = 96/318 (30%), Gaps = 36/318 (11%)

Query: 43  KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102
            P++   +   W+++ +     H    +N++   I    + +G G GKT   A   + L 
Sbjct: 26  APVKKERKSRTWRIKTL----PHQRGLINDTTTKI--LGLCSGFGGGKTWSAARKAVQLA 79

Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
              PG   I    +   L   ++ E+ K L+    +  F  Q    H             
Sbjct: 80  ILNPGCDGIITEPTIPLLVKIMYPELEKALNEAGIKWKFNKQDKIYHCRIAG-------- 131

Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG----TPDIINKSILGFFTEL 218
                           +  + +      +      DE             + +LG     
Sbjct: 132 ---------QMTRIICDSMENYTRLIGVNAAWCVCDEFDTTKPDIAMEAYRKLLGRLRTG 182

Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278
           N  +  ++ S        +    +   +  +  +  T     +   + + + ++Y    +
Sbjct: 183 NVRQ-MVIVSTPEGFRAMYQIFISEADDQKRLIKARTTDNHYLPQDYIDTLRAQY--PPE 239

Query: 279 VARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF-R 337
           +    + G+F           N+     + + + +    L++G D    G     V   R
Sbjct: 240 LIEAYLNGEFVNLTGGAVY-RNFSRTLNNCDTVAEDDDTLMIGMDF-NVGQMAGAVYVQR 297

Query: 338 RGNIIEH---IFDWSAKL 352
             + +E    + ++   L
Sbjct: 298 IADGVEEMHLVDEFCGLL 315


>gi|318064394|gb|ADV36428.1| phage terminase large subunit [Edwardsiella phage eiAU]
          Length = 460

 Score = 81.1 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/318 (12%), Positives = 96/318 (30%), Gaps = 36/318 (11%)

Query: 43  KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102
            P++   +   W+++ +     H    +N++   I    + +G G GKT   A   + L 
Sbjct: 26  APVKKERKSRTWRIKTL----PHQRGLINDTTTKI--LGLCSGFGGGKTWSAARKAVQLA 79

Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
              PG   I    +   L   ++ E+ K L+    +  F  Q    H             
Sbjct: 80  ILNPGCDGIITEPTIPLLVKIMYPELEKALNEAGIKWKFNKQDKIYHCRIAG-------- 131

Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG----TPDIINKSILGFFTEL 218
                           +  + +      +      DE             + +LG     
Sbjct: 132 ---------QMTRIICDSMENYTRLIGVNAAWCVCDEFDTTKPDIAMEAYRKLLGRLRTG 182

Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278
           N  +  ++ S        +    +   +  +  +  T     +   + + + ++Y    +
Sbjct: 183 NVRQ-MVIVSTPEGFRAMYQIFISEADDQKRLIKARTTDNHYLPQDYIDTLRAQY--PPE 239

Query: 279 VARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF-R 337
           +    + G+F           N+     + + + +    L++G D    G     V   R
Sbjct: 240 LIEAYLNGEFVNLTGGAVY-RNFSRTLNNCDTVAEDDDTLMIGMDF-NVGQMAGAVYVQR 297

Query: 338 RGNIIEH---IFDWSAKL 352
             + +E    + ++   L
Sbjct: 298 IADGVEEMHLVDEFCGLL 315


>gi|163736656|ref|ZP_02144075.1| hypothetical protein RGBS107_16031 [Phaeobacter gallaeciensis
           BS107]
 gi|161390526|gb|EDQ14876.1| hypothetical protein RGBS107_16031 [Phaeobacter gallaeciensis
           BS107]
          Length = 430

 Score = 81.1 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 79/292 (27%), Gaps = 35/292 (11%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134
            I  GRG GKT   A  +  L              I  +  +  Q+++ +    S  L+ 
Sbjct: 37  VILGGRGAGKTRAGAEWVRTLAEGATPLSAGRARRIALLGETYDQVRDVMVQGDSGLLAC 96

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
            P       ++                             T                  A
Sbjct: 97  TPRDRRPTWKATERRL------------------IWPNGATAQAFSAHDPEALRGPQFDA 138

Query: 195 VFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
            + DE +           +       +  R  +    T R  G   D+   P    + + 
Sbjct: 139 AWADELAKWKRGQDSWDMLQFALRLGDDPRVCVT--TTPRNVGVLRDLLASPST-VQTHA 195

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
                   + + F   + +RY   S + R E+ G   Q        +  +  A    A  
Sbjct: 196 ATEANRANLAASFIAEVRNRYAG-SRLGRQELDGILLQDVEGALWTNAGLVAAQI--AKA 252

Query: 313 DLYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC 361
                +++  D    AG+  D   +V     +     DW A ++ +   +G 
Sbjct: 253 PTLDRVVVAVDPAVSAGKRSDACGIVVVGATLQGPPQDWCAYVLADCTVQGV 304


>gi|254160843|ref|YP_003043951.1| hypothetical protein ECB_00733 [Escherichia coli B str. REL606]
 gi|253972744|gb|ACT38415.1| conserved hypothetical protein [Escherichia coli B str. REL606]
          Length = 540

 Score = 81.1 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/356 (11%), Positives = 86/356 (24%), Gaps = 24/356 (6%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIKGKPLEHFSQPHRWQL 56
           P      +   + L  +  + E + + K F           WG+   P            
Sbjct: 12  PDYQMVFEWRMERLQRIRQNPEILPALKQFYRTNPAQFIIDWGMTTDPRNIDYGLPVTIP 71

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
             +          +               R +G +     +   L      M I   +  
Sbjct: 72  FLLFPKQEEWIHWIMERWGNRENGITEKSREMGLSWTAIGLACSLCLFNKEMVIGFGSRK 131

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
           E  + ++     + +           ++         +A  +                  
Sbjct: 132 EEYV-DSTGDPKALFWKARKFVETLPVEFRGSWSEKKHAPYMRVEFP---------ETGA 181

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
             +                  DEA+     +        T        I  S+   +   
Sbjct: 182 VIKGEAGDNIGRGDRTTLYLVDEAAFLQRPLLIDAALSQTTRCR----IDLSSVNGMANP 237

Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
           F    +        +    R     D  ++     +   +  V   E+   +        
Sbjct: 238 FAQKRHGGK--IPVFTFHWRDDPRKDEEWYRRECEKI-DNPVVVAQELDLNYSASAEGVL 294

Query: 297 IPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
           IP  +++ A+              +   D+A EG DK     R G ++E++ +WS 
Sbjct: 295 IPSEWVQAAVDAHIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSG 350


>gi|159897093|ref|YP_001543340.1| hypothetical protein Haur_0564 [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159890132|gb|ABX03212.1| hypothetical protein Haur_0564 [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 477

 Score = 81.1 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 76/301 (25%), Gaps = 60/301 (19%)

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
           R +G + L     LWL   +PG  ++  +  + +    L   V +    LP         
Sbjct: 64  RQLGISWLCCAYALWLCLFQPGKVVLIFSKGQGEADEMLHR-VKRLYERLPDWMREA--- 119

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG--T 203
                S          +   +     +        P T     +     V  DEA     
Sbjct: 120 -----SPALVTDNTTELEWANGSRVKS-------LPATKGAGRSFTASLVILDEAGFLIW 167

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI---PLEDWKRYQIDTRTVEG 260
              +  ++             I+ S    +   F+ ++         +K   +       
Sbjct: 168 AKQLYTALKPTIDGGGQ---LIVLSTANGIGNLFHQLWVKALSAKNRFKTIFLPWWARPT 224

Query: 261 IDSGFHEGIISRYGLDSDVARIEI---------------------------LGQFPQQEV 293
            D+ +++  +  Y  D D+ R E                             G   +   
Sbjct: 225 RDAQWYQEQLEEY-TDLDMVRQEYPSTAQEAFLVSGRTRFKMPWLLQQTPSDGLAAESLP 283

Query: 294 NNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEG---GDKTVVVFRRGNIIEHIFDWSA 350
           +     + +        +       I+  D+A EG   GD            E +     
Sbjct: 284 DALDKLDGVTM----YQLPQQGRRYILAADVA-EGLEHGDFCAATLIDAVSWEEMVSVHG 338

Query: 351 K 351
           K
Sbjct: 339 K 339


>gi|296160121|ref|ZP_06842940.1| phage terminase, large subunit, PBSX family [Burkholderia sp.
           Ch1-1]
 gi|295889595|gb|EFG69394.1| phage terminase, large subunit, PBSX family [Burkholderia sp.
           Ch1-1]
          Length = 494

 Score = 81.1 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 87/301 (28%), Gaps = 42/301 (13%)

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
           P   K  +  GRG  KT     ++    S R    ++C+   +  ++ +  AE+S+ +  
Sbjct: 68  PKRLKI-VYGGRGSAKTRSVVSILTAQASARRE-RVLCLREIQNSIEESSHAELSEEIER 125

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
                 F +    +                     T +  ++     +       T    
Sbjct: 126 RDLSGSFVVGKKIIRV-----------------PATRSSFSFRGLYRNQRGIKGFTKASK 168

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL--------- 245
            + DEA G      + ++    E     +  +T N  + +   +     P          
Sbjct: 169 AWVDEADGVSRDSWEILMPTIREKGSEVW--VTFNPNKAHDPTWTDLIGPYEHLLDDGGC 226

Query: 246 ---EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302
              +D    + +                    +D D      LGQF ++         + 
Sbjct: 227 YEDDDVLIIRANYTDNPWFTEELELERAKMERVDKDRYNWIWLGQFNKRSNELIFAGKWR 286

Query: 303 EEAMSREAIDDLYAPLIMGCDIAGEGGDKTVV--VFRRGNIIEHIFDWSAKLIQETNQEG 360
            EA    A    +     G        D T +   F +GN +    D+ A  +++   +G
Sbjct: 287 TEAFETPANVRFFFGADWG-----FAQDPTTLNRSFVKGNTLFV--DYEANSLRQNAGKG 339

Query: 361 C 361
            
Sbjct: 340 V 340


>gi|291283815|ref|YP_003500633.1| hypothetical protein G2583_3121 [Escherichia coli O55:H7 str.
           CB9615]
 gi|290763688|gb|ADD57649.1| hypothetical protein G2583_3121 [Escherichia coli O55:H7 str.
           CB9615]
          Length = 540

 Score = 81.1 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/356 (11%), Positives = 86/356 (24%), Gaps = 24/356 (6%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIKGKPLEHFSQPHRWQL 56
           P      +   + L  +  + E + + K F           WG+   P            
Sbjct: 12  PDYQMVFEWRMERLQRIRQNPEILPALKQFYRTNPAQFIIDWGMTTDPRNIDYGLPVTIP 71

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
             +          +               R +G +     +   L      M I   +  
Sbjct: 72  FLLFPKQEEWIHWIMERWGNRENGITEKSREMGLSWTAIGLACSLCLFNKEMVIGFGSRK 131

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
           E  + ++     + +           ++         +A  +                  
Sbjct: 132 EEYV-DSTGDPKALFWKARKFVETLPVEFRGSWSEKKHAPYMRVEFP---------ETGA 181

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
             +                  DEA+     +        T        I  S+   +   
Sbjct: 182 VIKGEAGDNIGRGDRTTLYLVDEAAFLQRPLLIDAALSQTTRCR----IDLSSVNGMANP 237

Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
           F    +        +    R     D  ++     +   +  V   E+   +        
Sbjct: 238 FAQKRHGGK--IPVFTFHWRDDPRKDEEWYRRECEKI-DNPVVVAQELDLNYSASAEGVL 294

Query: 297 IPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
           IP  +++ A+              +   D+A EG DK     R G ++E++ +WS 
Sbjct: 295 IPSEWVQAAVDAHIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSG 350


>gi|78212008|ref|YP_380787.1| hypothetical protein Syncc9605_0456 [Synechococcus sp. CC9605]
 gi|78196467|gb|ABB34232.1| conserved hypothetical protein [Synechococcus sp. CC9605]
          Length = 414

 Score = 81.1 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 70/250 (28%), Gaps = 31/250 (12%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
            +++GR  GKT +    +L       G  +  +A +  Q K   W ++ + +        
Sbjct: 24  VVNSGRRFGKTRMALTWLLEGALLTSGSRMWFLAPTRVQAKQIAWRDLKEMVPGSWASQV 83

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
            E                   + + +  +            D               DE 
Sbjct: 84  RESTLT---------------IELRNGSHIQLA------GADYADSLRGQRADRFAIDEY 122

Query: 201 SGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP--LEDWKRYQIDTR 256
               D   + ++ L      + +   I +S       +  +++      E W R+   + 
Sbjct: 123 CYIRDLQEMWQAALLPMLGTSDDGSVIFSSTPAGGGTFSAELWERAETAEGWARWNFPSV 182

Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA 316
               +   + E        D  + R E  G   +  +    P        +     D   
Sbjct: 183 AGGWVKPEYVEQARQTM--DPSLWRQEFFGS-IESLLGAVYPAF---NQQNISDTVDNGG 236

Query: 317 PLIMGCDIAG 326
           PL++GCD   
Sbjct: 237 PLLVGCDFNR 246


>gi|84503393|ref|ZP_01001462.1| Putative large terminase [Oceanicola batsensis HTCC2597]
 gi|84388303|gb|EAQ01254.1| Putative large terminase [Oceanicola batsensis HTCC2597]
          Length = 460

 Score = 80.8 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/267 (12%), Positives = 62/267 (23%), Gaps = 35/267 (13%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134
            I  GRG GKT   A  +   +             I  +  +  Q++  +    S  ++ 
Sbjct: 67  VILGGRGAGKTRAGAEWVRAQVEGDRPLDKGRCKRIALVGETIDQVREVMIFGDSGIMAC 126

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
            P     E ++                                        G        
Sbjct: 127 SPPDRRPEWEATRKRL------------------VWPNGAVAYAFSAHEPEGLRGPQFDG 168

Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
            + DE             +       +  R  +    T R  G   D+  +       + 
Sbjct: 169 AWADELGKWRRGRDSWDMLQFALRLGDAPRVCVT--TTPRNVGVLKDLLEMDST-VTTHA 225

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
                   +   F   + +RY     + R E+ G               +E    R    
Sbjct: 226 PTEANRANLADSFLAEVRARYAGTG-LGRQELDGVMLDAAEGALWTPAMLEAG--RVEAP 282

Query: 313 DLYAPLIMGCDI---AGEGGDKTVVVF 336
                +++  D       G D+  +V 
Sbjct: 283 PDLDRIVVAVDPPVTGHAGSDECGIVV 309


>gi|218555117|ref|YP_002388030.1| hypothetical protein ECIAI1_2647 [Escherichia coli IAI1]
 gi|218361885|emb|CAQ99485.1| conserved hypothetical protein from bacteriophage origin
           [Escherichia coli IAI1]
          Length = 540

 Score = 80.8 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/267 (11%), Positives = 69/267 (25%), Gaps = 19/267 (7%)

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
           R +G +     +   L      M I   +  E  + ++     + +           ++ 
Sbjct: 101 REMGLSWTAIGLACSLCLFNKEMVIGFGSRKEEYV-DSTGDPKALFWKARKFVETLPVEF 159

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
                   +A  +                    +                  DEA+    
Sbjct: 160 RGSWSEKKHAPYMRVEFP---------ETGAVIKGEAGDNIGRGDRTTLYLVDEAAFLQR 210

Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265
            +        T        I  S+   +   F    +        +    R     D  +
Sbjct: 211 PLLIDAALSQTTRCR----IDLSSVNGMANPFAQKRHGGK--IPVFTFHWRDDPRKDEEW 264

Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCD 323
           +     +   +  V   E+   +        IP  +++ A+              +   D
Sbjct: 265 YRRECEKI-DNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDAHIKLGIQPTGKRLGAMD 323

Query: 324 IAGEGGDKTVVVFRRGNIIEHIFDWSA 350
           +A EG DK     R G ++E++ +WS 
Sbjct: 324 VADEGRDKNAFSTRHGFLMENVREWSG 350


>gi|302339289|ref|YP_003804495.1| hypothetical protein Spirs_2798 [Spirochaeta smaragdinae DSM 11293]
 gi|301636474|gb|ADK81901.1| conserved hypothetical protein [Spirochaeta smaragdinae DSM 11293]
          Length = 295

 Score = 80.8 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/292 (13%), Positives = 88/292 (30%), Gaps = 61/292 (20%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P  WQ   ++               ++ +  ++  R  GK+T+ A           G  I
Sbjct: 33  PFLWQDWALDQ--------------SLRRLLLNCCRQAGKSTVIAAKAAHKAKFFSGSLI 78

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           I ++ +  Q K  +  +V  ++++                     E  + +    ++   
Sbjct: 79  ILVSPALRQSKELM-RKVEDFIALDKSFP------------PASEEDNQLTKEFKNRSRI 125

Query: 171 ITCRTYSEERPDTFVGPHN-THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
           +         P +       +    +  DEAS  PD + K+I       +     ++ + 
Sbjct: 126 VA-------LPGSEKTIRGLSGPTLIIIDEASRIPDELYKAIRPMMAGADTEL--VLMTT 176

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTV-EGIDSGFHEGIISRYGL------------- 275
                G FYD ++   + W + ++  R +     +      + R                
Sbjct: 177 PFGKRGVFYDAWSR-SKRWTKIEVVGRDILGRFPNEQVYAQLRRKDGIKACYSPRHSVEF 235

Query: 276 --------DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319
                        R E  G+F     ++      +  A+  +     +AP+I
Sbjct: 236 LGEELEEMGEWWYRQEYGGEFMDPI-DSVFNMEDVRAAIINDTPAISFAPII 286


>gi|281416211|ref|YP_003347946.1| DNA packaging/maturation protein B [Vibrio phage N4]
 gi|237701518|gb|ACR16511.1| DNA packaging/maturation protein B [Vibrio phage N4]
          Length = 572

 Score = 80.8 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/382 (12%), Positives = 88/382 (23%), Gaps = 91/382 (23%)

Query: 24  CVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS 83
               F  F+M    W     P     +P R Q +    +                +  + 
Sbjct: 1   MKNDFVLFLMVL--WRALNLP-----EPTRCQKDMARKLAAGDER----------RFILQ 43

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           A RGIGK+ +    ++W +   P +  + ++ S+ +        + + + +LP  H  + 
Sbjct: 44  AFRGIGKSFITCAFVVWKLWNNPQLKFMIVSASKERADANSIF-IKRIIDLLPFLHELKP 102

Query: 144 QSLSLHPSGWYAELL-EQSMGIDSKHYTITCRTY----------SEERPDTFVGPHNTHG 192
           +         +   L +       K   IT +              E P+          
Sbjct: 103 RPEQRDSVISFDVGLAKPDHSPSVKSVGITGQLTGSRADILIADDVEVPNNSATQAARDR 162

Query: 193 MAVFNDEASGT------------PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
           +     E                P                   W      + +N      
Sbjct: 163 LGELVKEFDAILKPNGTIIYLGTPQCEMTLYRELENRGYKTTIWPARY-PKDMNDLETYG 221

Query: 241 FNIPL-------EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293
             +         E+ + Y          D          YG      +  +    P    
Sbjct: 222 NRLAPMLKDELMENPEAYWWQPTDPVRFDDEDLRERELSYGKAGFALQFML---NPNLSD 278

Query: 294 NNFIP---HNYIEEAMSREAID------------------------------------DL 314
               P    ++I  A+  +                                         
Sbjct: 279 AEKYPLKLRDFIVAALEVDKAPLTYGWLPNPQNLLQNVPQVGLKGDTYHRYDVADKRQAS 338

Query: 315 YAPLIMGCDIAGEGGDKTVVVF 336
           Y   IM  D +G G D+T    
Sbjct: 339 YTSKIMAIDPSGRGKDETGYCV 360


>gi|68299748|ref|YP_249597.1| DNA packaging protein B [Vibriophage VP4]
 gi|66473287|gb|AAY46296.1| DNA packaging protein B [Vibriophage VP4]
          Length = 586

 Score = 80.8 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/382 (12%), Positives = 88/382 (23%), Gaps = 91/382 (23%)

Query: 24  CVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS 83
               F  F+M    W     P     +P R Q +    +                +  + 
Sbjct: 15  MKNDFVLFLMVL--WRALNLP-----EPTRCQKDMARKLAAGDER----------RFILQ 57

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           A RGIGK+ +    ++W +   P +  + ++ S+ +        + + + +LP  H  + 
Sbjct: 58  AFRGIGKSFITCAFVVWKLWNNPQLKFMIVSASKERADANSIF-IKRIIDLLPFLHELKP 116

Query: 144 QSLSLHPSGWYAELL-EQSMGIDSKHYTITCRTY----------SEERPDTFVGPHNTHG 192
           +         +   L +       K   IT +              E P+          
Sbjct: 117 RPEQRDSVISFDVGLAKPDHSPSVKSVGITGQLTGSRADILIADDVEVPNNSATQAARDR 176

Query: 193 MAVFNDEASGT------------PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
           +     E                P                   W      + +N      
Sbjct: 177 LGELVKEFDAILKPNGTIIYLGTPQCEMTLYRELENRGYKTTIWPARY-PKDMNDLETYG 235

Query: 241 FNIPL-------EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293
             +         E+ + Y          D          YG      +  +    P    
Sbjct: 236 NRLAPMLKDELMENPEAYWWQPTDPVRFDDEDLRERELSYGKAGFALQFML---NPNLSD 292

Query: 294 NNFIP---HNYIEEAMSREAID------------------------------------DL 314
               P    ++I  A+  +                                         
Sbjct: 293 AEKYPLKLRDFIVAALEVDKAPLTYGWLPNPQNLLQNVPQVGLKGDTYHRYDVADKRQAS 352

Query: 315 YAPLIMGCDIAGEGGDKTVVVF 336
           Y   IM  D +G G D+T    
Sbjct: 353 YTSKIMAIDPSGRGKDETGYCV 374


>gi|291334534|gb|ADD94186.1| hypothetical protein Syncc9605_0456 [uncultured phage
           MedDCM-OCT-S04-C1220]
 gi|291335526|gb|ADD95137.1| hypothetical protein Syncc9605_0456 [uncultured phage
           MedDCM-OCT-S04-C491]
 gi|291335665|gb|ADD95272.1| hypothetical protein Syncc9605_0456 [uncultured phage
           MedDCM-OCT-S04-C846]
          Length = 354

 Score = 80.8 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 70/208 (33%), Gaps = 16/208 (7%)

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP-D 205
            +         +      D +   I   T   +  +  +         V  DEA+    +
Sbjct: 8   RVLKKLVPKVWIRTKNETDLRIELINGSTIELKGTENAMALRGRSLSGVVLDEAAFMDAE 67

Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF----NIPLEDWKRYQIDTRTVEGI 261
           +  + I       +   + +  S       WFYD++    +    +W+R+   T     +
Sbjct: 68  VWFEVIRPALA--DKEGWALFISTPDGTASWFYDLWCYVPDDETNEWQRWSYTTIDGGNV 125

Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMG 321
                E   ++   D+   R E    F  + +   +  ++ +E +S+EA D    PL++G
Sbjct: 126 SKHEVEAARAQL--DTRTFRQEFEASF--ENLTGLVAISFSDENISQEAKDISIQPLLLG 181

Query: 322 CDIAGEGGD-KTVVV-FRRGNIIEHIFD 347
            D      D  + +   + G  +    +
Sbjct: 182 VD---FNVDPMSGICAVKNGETLYVFDE 206


>gi|254776419|ref|ZP_05217935.1| phage terminase [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 491

 Score = 80.8 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 41/329 (12%), Positives = 86/329 (26%), Gaps = 53/329 (16%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             WQ+  +          +          AI   RG+GKT + A + L+ +   P  + I
Sbjct: 51  RPWQMGMLRPFLDPDPRPLVG--------AIMGPRGLGKTGIFAALGLYELFCGPDGNEI 102

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            I   + ++   L    ++ + +                    A +    + +  K  T+
Sbjct: 103 PIVAVDERMAGRLLKPAAQMVELN-------------DELAARAVVYRDRIEVPGKRSTL 149

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI------------LGFFTELN 219
           T      +R +               DE          ++            LG  T  N
Sbjct: 150 TALPAEAKRIEGLGTW-----TLALADELGEIDPDTWSTLLLGAGKLDGAMALGIGTPPN 204

Query: 220 PNRFWIM------TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISR- 272
                +        +N       FY+      E      +    +               
Sbjct: 205 RETSVLTDLREACRANPDDRTMAFYEFSADGFEHHPVSCVHCLELANPQLDDLLSRDRAT 264

Query: 273 ---YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329
                      R + L Q      + F+  +  +   +   + D  A +++  D + +  
Sbjct: 265 ALLKQTTEGEYRRKRLCQVVTTNESPFVDADTWDGLKAPHPVPD-GADVVIALDGSLK-D 322

Query: 330 DKTVVVFRRGNIIEHIFDWSAKLIQETNQ 358
           D T +V      +  +  +      E   
Sbjct: 323 DSTALVV---GTVGKVPHFDRLDAWENPG 348


>gi|218296727|ref|ZP_03497433.1| protein of unknown function DUF264 [Thermus aquaticus Y51MC23]
 gi|218242816|gb|EED09350.1| protein of unknown function DUF264 [Thermus aquaticus Y51MC23]
          Length = 425

 Score = 80.4 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 88/273 (32%), Gaps = 25/273 (9%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
           + FK  + + R  GK+               G + + ++  E Q +    AE +K     
Sbjct: 17  SRFKIGLWS-RQTGKSFALTLEAALHAVEHRGSTWVLLSAGERQSREL--AEKAKAHLDA 73

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
             +    M+S           + +  + + +    I         P         +   V
Sbjct: 74  MKQVGTLMESRFF---EGGESVTQLEIRLPNLSRLIF-------LPANPRTARG-YTGNV 122

Query: 196 FNDEASG--TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253
             DE +     + I  ++    T   P+    + S      G F++++      W R+++
Sbjct: 123 VLDEFAFHQDSEAIWAAMYPIIT-RRPDLKIRVMSTPNGPRGKFWELWEKGGPAWSRHKV 181

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA--- 310
                           +     D  + + E L +F       F+P + I EA +RE    
Sbjct: 182 TIYDAVAQGLPVDPEELRAGLADDFIWQQEYLCEFL-SAEEAFLPWSLILEAEAREDPRG 240

Query: 311 IDDLYAPLIMGCDIAGEGGDKTVVVF--RRGNI 341
             +      +G D+     D TV V   R G++
Sbjct: 241 PWNPDQAY-LGVDVGRH-RDLTVFVVLERVGDV 271


>gi|89054122|ref|YP_509573.1| hypothetical protein Jann_1631 [Jannaschia sp. CCS1]
 gi|88863671|gb|ABD54548.1| protein of unknown function DUF264 [Jannaschia sp. CCS1]
          Length = 483

 Score = 80.4 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/267 (11%), Positives = 61/267 (22%), Gaps = 35/267 (13%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134
            +  GRG GKT   A  +  ++             +  I  +  Q    +    S  ++ 
Sbjct: 90  VVLGGRGAGKTRAGAEWVRSMVEGATPEAPGRAKRVALIGETYDQAMAVMVKGESGLIAC 149

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
            P        +                                    +            
Sbjct: 150 SPPDRVPRWIAGERKL------------------VWPNGAEAQVFSANDPEALRGPQFDL 191

Query: 195 VFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
            + DE +  P        +              + + T R      D+  +  +      
Sbjct: 192 AWADELAKWPKAQETWDMLQFGLRLGQHP--QQIVTTTPRNVNVLKDL--LARDGVAHTH 247

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
             T       +      +     D+ + R E+ G       N       I+E    +A D
Sbjct: 248 APTEANSAYLADSFLTEVRSRYGDTRLGRQELDGVLLDDVDNALWVRGAIDEGRLTDAPD 307

Query: 313 DLYAPLIMGCDI---AGEGGDKTVVVF 336
                +I+  D       G D   +V 
Sbjct: 308 V--TRVIVAVDPPVTGHAGSDACGIVV 332


>gi|313499430|gb|ADR60796.1| P-loop protein [Pseudomonas putida BIRD-1]
          Length = 374

 Score = 80.4 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/293 (11%), Positives = 68/293 (23%), Gaps = 48/293 (16%)

Query: 77  IFKCAISAGRGIGKTTL-------NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129
            F+ A+  GR  GKT L        A +      +     I   A +  Q K   W  + 
Sbjct: 33  RFRDAVC-GRRFGKTFLGKAEMRRAARLAAEWGVSVEDE-IWYGAPTFKQAKRVFWRRLK 90

Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189
           + +              S+                       +         D +     
Sbjct: 91  QAIPEAWRAARPNETECSITLK--------------------SGHIMRVVGLDNYDNLRG 130

Query: 190 THGMAVFNDEASGTPDIIN-KSILGFF---------TELNPNRFWIMTSNTRRLNGWFYD 239
           +    V  DE +        + +             T  +      +   T +     YD
Sbjct: 131 SGLFFVLVDEWADCSWAAWEEVLRPMLSTCQYTIPQTGESRKGGHALRIGTPKGFNHCYD 190

Query: 240 IFNIPL----EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN 295
            +         D K +Q  +     + +   +    +   D    R E    F +     
Sbjct: 191 TYRDGQPGGEPDHKSWQYTSLQGGNVPAVELDAARRKM--DPRTFRQEYEAGF-ENYAGV 247

Query: 296 FIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348
                +                + +G D         VV   R  +   + ++
Sbjct: 248 VYS-TFDRAECHTSERIKPGEAIHIGMDFNVM-KMAAVVYVVRDGLPLALDEF 298


>gi|323512078|gb|ADX87539.1| DNA packaging protein B [Vibrio phage ICP3_2009_B]
 gi|323512127|gb|ADX87587.1| DNA packaging protein B [Vibrio phage ICP3_2009_A]
 gi|323512176|gb|ADX87635.1| DNA packaging protein B [Vibrio phage ICP3_2008_A]
 gi|323512224|gb|ADX87682.1| DNA packaging protein B [Vibrio phage ICP3_2007_A]
          Length = 572

 Score = 80.4 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/382 (12%), Positives = 88/382 (23%), Gaps = 91/382 (23%)

Query: 24  CVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS 83
               F  F+M    W     P     +P R Q +    +                +  + 
Sbjct: 1   MKNDFVLFLMVL--WRALNLP-----EPTRCQKDMARKLAAGDER----------RFILQ 43

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           A RGIGK+ +    ++W +   P +  + ++ S+ +        + + + +LP  H  + 
Sbjct: 44  AFRGIGKSFITCAFVVWKLWNNPQLKFMIVSASKERADANSIF-IKRIIDLLPFLHELKP 102

Query: 144 QSLSLHPSGWYAELL-EQSMGIDSKHYTITCRTY----------SEERPDTFVGPHNTHG 192
           +         +   L +       K   IT +              E P+          
Sbjct: 103 RPEQRDSVISFDVGLAKPDHSPSVKSVGITGQLTGSRADILIADDVEVPNNSATQAARDR 162

Query: 193 MAVFNDEASGT------------PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
           +     E                P                   W      + +N      
Sbjct: 163 LGELVKEFDAILKPNGTIIYLGTPQCEMTLYRELENRGYKTTIWPARY-PKDMNDLESYG 221

Query: 241 FNIPL-------EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293
             +         E+ + Y          D          YG      +  +    P    
Sbjct: 222 NRLAPMLKDELMENPEAYWWQPTDPVRFDDEDLRERELSYGKAGFALQFML---NPNLSD 278

Query: 294 NNFIP---HNYIEEAMSREAID------------------------------------DL 314
               P    ++I  A+  +                                         
Sbjct: 279 AEKYPLKLRDFIVAALEVDKAPLTYGWLPNPQNLLQNVPQVGLKGDTYHRYDVADKRQSS 338

Query: 315 YAPLIMGCDIAGEGGDKTVVVF 336
           Y   IM  D +G G D+T    
Sbjct: 339 YTSKIMTIDPSGRGKDETGYCV 360


>gi|325171325|ref|YP_004251296.1| DNA packaging protein B [Vibrio phage ICP3]
 gi|323512031|gb|ADX87493.1| DNA packaging protein B [Vibrio phage ICP3]
          Length = 586

 Score = 80.4 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/382 (12%), Positives = 88/382 (23%), Gaps = 91/382 (23%)

Query: 24  CVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS 83
               F  F+M    W     P     +P R Q +    +                +  + 
Sbjct: 15  MKNDFVLFLMVL--WRALNLP-----EPTRCQKDMARKLAAGDER----------RFILQ 57

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           A RGIGK+ +    ++W +   P +  + ++ S+ +        + + + +LP  H  + 
Sbjct: 58  AFRGIGKSFITCAFVVWKLWNNPQLKFMIVSASKERADANSIF-IKRIIDLLPFLHELKP 116

Query: 144 QSLSLHPSGWYAELL-EQSMGIDSKHYTITCRTY----------SEERPDTFVGPHNTHG 192
           +         +   L +       K   IT +              E P+          
Sbjct: 117 RPEQRDSVISFDVGLAKPDHSPSVKSVGITGQLTGSRADILIADDVEVPNNSATQAARDR 176

Query: 193 MAVFNDEASGT------------PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
           +     E                P                   W      + +N      
Sbjct: 177 LGELVKEFDAILKPNGTIIYLGTPQCEMTLYRELENRGYKTTIWPARY-PKDMNDLESYG 235

Query: 241 FNIPL-------EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293
             +         E+ + Y          D          YG      +  +    P    
Sbjct: 236 NRLAPMLKDELMENPEAYWWQPTDPVRFDDEDLRERELSYGKAGFALQFML---NPNLSD 292

Query: 294 NNFIP---HNYIEEAMSREAID------------------------------------DL 314
               P    ++I  A+  +                                         
Sbjct: 293 AEKYPLKLRDFIVAALEVDKAPLTYGWLPNPQNLLQNVPQVGLKGDTYHRYDVADKRQSS 352

Query: 315 YAPLIMGCDIAGEGGDKTVVVF 336
           Y   IM  D +G G D+T    
Sbjct: 353 YTSKIMTIDPSGRGKDETGYCV 374


>gi|297569231|ref|YP_003690575.1| hypothetical protein DaAHT2_1260 [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925146|gb|ADH85956.1| conserved hypothetical protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 465

 Score = 80.4 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/345 (13%), Positives = 83/345 (24%), Gaps = 49/345 (14%)

Query: 23  ECVLSFKNFVMRFF--PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKC 80
           +       F   F    W      L         Q +    +   C          + + 
Sbjct: 5   QAAQDPALFARWFKQGDWSAWFAFLSAVFGLEMNQEQ--RRIFETCTGRQKAPESPVKEA 62

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGM---------SIICIANSETQLKNTLWAEVSKW 131
            +  GR  GK+   A + ++L +              +++ +A    Q +          
Sbjct: 63  WLVVGRRGGKSFTTALIAVYLAAFHDYRQFLQPGERGTVLILAADRKQARTIF------- 115

Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
                   +     L +       E             +I   T S      +       
Sbjct: 116 -------RYARAMVLEIPMLAGLLERETADGLELKNSVSIEIATAS------YRATRGYT 162

Query: 192 GMAVFNDEASGT-------PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-- 242
            +A   DE +            I  +I        PN   ++ S+     G  Y  +   
Sbjct: 163 VVAALLDEIAFWFTDGANPDHEIVNAIQPGMAT-IPNAMMLVLSSPYAKQGELYRAYRES 221

Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302
              +D +       T     S     I   Y  D   A  E  GQF       F+    +
Sbjct: 222 FGADDPEVLVWQADTKTMNPSVPDRIIQRAYDRDPAAAAAEYGGQFRDDLE-QFVSREVV 280

Query: 303 EEAMS---REAIDDLYAPLIMGCDIAGEGGDKTVVVF--RRGNII 342
           +        E             D +G   D   +    R G+ +
Sbjct: 281 DSCTREEPTELPPISSNRYYGFTDPSGGSADSMTLAISHREGDRV 325


>gi|158337379|ref|YP_001518554.1| hypothetical protein AM1_4258 [Acaryochloris marina MBIC11017]
 gi|158307620|gb|ABW29237.1| conserved domain protein [Acaryochloris marina MBIC11017]
          Length = 476

 Score = 80.4 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 48/345 (13%), Positives = 98/345 (28%), Gaps = 61/345 (17%)

Query: 38  WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS-AGRGIGKTTLNAW 96
           W   G  L+ F     WQ + ++ ++         S     K ++   GR +G + L   
Sbjct: 41  WIKSGGSLKQFILWD-WQKDVVDWIEEPQ------SLSDSPKLSVIIKGRQLGLSQLCCS 93

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
             L+          + I+ +++              S L      EM S +         
Sbjct: 94  WFLYKAWQNSAWVGVIISRTQSD-------------SSLLASRMREMASTAGLVDFSTDS 140

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN-THGMAVFNDEASGTPDI--INKSILG 213
           LL+  +      +  +                       +  DEA+   ++     +   
Sbjct: 141 LLKLEISGGGTLHFRSA---------AVDAVRGIDSVSGILFDEAAFQTNLKLSLSAATP 191

Query: 214 FFTELNPNRFWIMTSNTRRLNGWFYDIFN-----------------IPLEDWK------R 250
             +++  +   I+ S     +G F+D  N                  P+  W+       
Sbjct: 192 AMSQVGSDARIILCSTPNGASGHFFDTLNGFDNCVSDIERIRSGELPPVNKWQREDGNIA 251

Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
             I  ++V G +  + E +     L       E       +  +       +  A + E 
Sbjct: 252 IAIHWKSVYGDNPSYLEDLEKSLSLPKAQIAQEYDLS-LTESSSVVFSFAVVRAAATGEY 310

Query: 311 ID--DLYAPLIMGCDIAGEGGDK--TVVVFRRGNIIEHIFDWSAK 351
                      +G D AG G D   +V + + G        +  +
Sbjct: 311 EPQFTEDELYYVGVDPAGSGADYFCSVFLKKTGETFTVSKLYRKR 355


>gi|209548746|ref|YP_002280663.1| phage terminase, large subunit, PBSX family [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209534502|gb|ACI54437.1| phage terminase, large subunit, PBSX family [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 424

 Score = 80.4 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/320 (11%), Positives = 86/320 (26%), Gaps = 45/320 (14%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q++  E              P  +K A   GRG  K+     +++ + + +P   I+C  
Sbjct: 3   QIQIPEKFAPFLE-------PHRYKTAY-GGRGGAKSHTIGGLLVHIAARQPEF-IVCGR 53

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
             +  ++++++  +               ++          +  + S+           +
Sbjct: 54  EFQNSIEDSVYRLL---------------ENTIKKDGLTDYKFTKTSIENTRTGSEFVFK 98

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
             S+    +           ++ +E     +    +++           W    N   + 
Sbjct: 99  GLSKLDGVSIKSLEGATK--LWIEEGQNITNGTLNNVIPTIRTEGSE-IWTSF-NPSVIE 154

Query: 235 GWFYDI-FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRY-GLDSDVARIEILGQFPQQE 292
              +      P  D    +++            E     +  +D         G      
Sbjct: 155 APVWQRLVVKPPPDSVVVKVNHNDNPWFPKVLEEERRHHFVTMDRATYDNIWEGVPMAFT 214

Query: 293 VNNFIPHNYI---EEAMSREAIDDLYAPLIMGCDI--AGEG-GDKTVVVFRR---GNIIE 343
                        ++    +   D   P+I   D+  A  G GD   + F +   G  + 
Sbjct: 215 AGAIFREEMAAMEKQGRIGKVPHDPTKPVIAVFDMGHAASGKGDPHAITFVQQGNGTAVN 274

Query: 344 HIFDWSAKLIQETNQEGCPV 363
            I  W        N +  P 
Sbjct: 275 AIGYWEG------NNKPLPT 288


>gi|194430118|ref|ZP_03062621.1| gp33 TerL [Escherichia coli B171]
 gi|215487586|ref|YP_002330017.1| predicted terminase, large subunit [Escherichia coli O127:H6 str.
           E2348/69]
 gi|260845222|ref|YP_003223000.1| putative terminase large subunit [Escherichia coli O103:H2 str.
           12009]
 gi|194411828|gb|EDX28147.1| gp33 TerL [Escherichia coli B171]
 gi|215265658|emb|CAS10061.1| predicted terminase, large subunit [Escherichia coli O127:H6 str.
           E2348/69]
 gi|257760369|dbj|BAI31866.1| predicted terminase large subunit [Escherichia coli O103:H2 str.
           12009]
 gi|309702924|emb|CBJ02255.1| putative phage gp33 TerL [Escherichia coli ETEC H10407]
 gi|323159191|gb|EFZ45181.1| gp33 TerL [Escherichia coli E128010]
          Length = 540

 Score = 80.4 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/267 (11%), Positives = 69/267 (25%), Gaps = 19/267 (7%)

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
           R +G +     +   L      M I   +  E  + ++     + +           ++ 
Sbjct: 101 REMGLSWTAIGLACSLCLFNKEMVIGFGSRKEEYV-DSTGDPKALFWKARKFVETLPVEF 159

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
                   +A  +                    +                  DEA+    
Sbjct: 160 RGSWSEKKHAPYMRVEFP---------ETGAVIKGEAGDNIGRGDRTTLYLVDEAAFLQR 210

Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265
            +        T        I  S+   +   F    +        +    R     D  +
Sbjct: 211 PLLIDAALSQTTRCR----IDLSSVNGMANPFAQKRHGGK--IPVFTFHWRDDPRKDEEW 264

Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCD 323
           +     +   +  V   E+   +        IP  +++ A+              +   D
Sbjct: 265 YRRECEKI-DNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDAHIKLGIQPTGKRLGAMD 323

Query: 324 IAGEGGDKTVVVFRRGNIIEHIFDWSA 350
           +A EG DK     R G ++E++ +WS 
Sbjct: 324 VADEGRDKNAFSTRHGFLLENVREWSG 350


>gi|324114526|gb|EGC08494.1| hypothetical protein ERIG_00518 [Escherichia fergusonii B253]
          Length = 540

 Score = 80.0 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 40/356 (11%), Positives = 87/356 (24%), Gaps = 24/356 (6%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIKGKPLEHFSQPHRWQL 56
           P      +   + L  +  + E + + K F           WG+   P            
Sbjct: 12  PDYQMVFEWRMERLQRIRQNPEILPALKQFYRTNPAQFIIDWGMTTDPRNIDYGLPVTIP 71

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
             +          +               R +G +     +   L   +  M I   +  
Sbjct: 72  FLLFPKQEEWIHWIMERWGNRENGITEKSREMGLSWTAIGLACSLCLFKKEMVIGFGSRK 131

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
           E  + ++     + +           ++         +A  +                  
Sbjct: 132 EEYV-DSTGDPKALFWKARKFVETLPVEFRGSWSEKKHAPYMRVEFP---------ETGA 181

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
             +                  DEA+     +        T        I  S+   +   
Sbjct: 182 VIKGEAGDNIGRGDRTTLYLVDEAAFLQRPLLIDAALSQTTRCR----IDLSSVNGMANP 237

Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
           F    +        +    R     D  ++     +   +  V   E+   +        
Sbjct: 238 FAQKRHGGK--IPVFTFHWRDDPRKDEEWYRRECEKI-DNPVVVAQELDLNYSASAEGVL 294

Query: 297 IPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
           IP  +++ A+              +   D+A EG DK     R G ++E++ +WS 
Sbjct: 295 IPSEWVQAAVDAHIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSG 350


>gi|83308162|emb|CAJ29395.1| gp19 protein [Enterobacteria phage K1F]
          Length = 586

 Score = 80.0 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 46/387 (11%), Positives = 92/387 (23%), Gaps = 91/387 (23%)

Query: 19  LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78
           LM A     F  F+  F  W     P+     P R Q++  + +    +           
Sbjct: 11  LMTARMKADFVFFL--FVLWKALSLPV-----PTRCQIDMAKKLSAGDNR---------- 53

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  + A RGIGK+ +    ++W +   P +  + ++ S+ +        + + + ++P  
Sbjct: 54  RFILQAFRGIGKSFITCAFVVWKLWNNPDLKFMIVSASKERADANSIF-IKRIIDLMPQL 112

Query: 139 HWFEMQSLSLHPSGWYAE-LLEQSMGIDSKHYTITCRTY----------SEERPDTFVGP 187
              + +         +     +       K   IT +              E P+     
Sbjct: 113 KELKPKQGQRDAVISFDVGPAKPDHSPSVKSVGITGQLTGSRADILIADDVEVPNNSATQ 172

Query: 188 HNTHGMAVFNDEASGT------------PDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
                ++    E                P                   W      R    
Sbjct: 173 AARDRLSELVKEFDAILKPGGTIIYLGTPQNEMTLYRELEGRGYTTTIWPARY-PRDRKD 231

Query: 236 WFYDIFNIP-------LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
           W      +         ED + +          D    +     YG      +  +    
Sbjct: 232 WQSYGDRLAPMLQAELEEDPESFYWRPTDEVRFDDTDLKERELSYGKAGFALQFML---N 288

Query: 289 PQQEVNNFIPHNYIE----------EAMSREAIDDL------------------------ 314
           P        P    +            M  + + +                         
Sbjct: 289 PNLSDAEKYPLKLRDLIVADLDPASSPMVYQWLPNPQNKREDVPNVGLMGDSYHTYQTVG 348

Query: 315 -----YAPLIMGCDIAGEGGDKTVVVF 336
                Y   I+  D +G G D+T    
Sbjct: 349 SAFSSYTQKILVIDPSGRGKDETGYAV 375


>gi|39934961|ref|NP_947237.1| terminase GTA [Rhodopseudomonas palustris CGA009]
 gi|39648812|emb|CAE27333.1| probable large terminase, Rhodobacter capsulatus GTA orfg2
           homologue [Rhodopseudomonas palustris CGA009]
          Length = 386

 Score = 80.0 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 72/264 (27%), Gaps = 35/264 (13%)

Query: 82  ISAGRGIGKTTLNAWMMLWLI------STRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
           +  GRG GKT   A  +  ++      +TRP   I  +  S    +  +    S  L + 
Sbjct: 1   MLGGRGAGKTRAGAEWVRAMVAGTPPYATRPHGRIALVGESWHDAREVMVEGESGLLRIT 60

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
           P R   E  +                                    D           A 
Sbjct: 61  PRRERPEWIATRKRLE------------------WPNGAVGEVFSADDPDSLRGPQFEAA 102

Query: 196 FNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253
           + DE +     +     +       +  R   + + T R       +   P         
Sbjct: 103 WCDELAKWRYAEASFDMLQFGLRLGSRPRQ--LITTTPRPLPLIKRLLGDPHTR-VTRAP 159

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
                  +   F E +++RY       R E+ G+  +   +     + IE A  R A   
Sbjct: 160 TRANAAHLSPAFLETVVARYAGT-RQGRQELDGELIEDRPDALWSRDRIERA--RVAAAP 216

Query: 314 LYAPLIMGCDI---AGEGGDKTVV 334
               +++  D    +  G D   +
Sbjct: 217 PLVRIVVAIDPPGSSRPGADACGI 240


>gi|262279834|ref|ZP_06057619.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262260185|gb|EEY78918.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 416

 Score = 80.0 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 80/288 (27%), Gaps = 40/288 (13%)

Query: 77  IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI------ICIANSETQLKNTLWAEVSK 130
            F+ A+  GR  GKT L    M          ++         A +  Q K   W  + +
Sbjct: 9   RFRDAVC-GRRFGKTFLAKAEMRRAARLAAKWNVSVEDEIWYAAPTFKQAKRVFWKRLKQ 67

Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
            +                          E S+ + S H             D +     +
Sbjct: 68  AIPASW--------------RAGKPNETECSITLRSGHVIRVVGL------DNYDDLRGS 107

Query: 191 HGMAVFNDEASGTPDIIN-KSILGFFT-------ELNPNRFWIMTSNTRRLNGWFYDIFN 242
               +  DE +        + +    +        +      ++   T +     YD F 
Sbjct: 108 GLFFLIIDEWADCKWAAWEEVLRPMLSTCKYVVNGVQRVGGHVLRIGTPKGFNHCYDTFM 167

Query: 243 --IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
              P  +         +++G +    E I+++  +D      E    F   +   F   N
Sbjct: 168 DGQPGHEPDCKSFSYTSLQGGNIPESEIIVAKRKMDPKTFSQEYEASFESYQGVIFYCFN 227

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348
            +  A +          L +G D         VV  RRG  +  + ++
Sbjct: 228 RLLSASTETVQ--ANDVLHVGMDFNVT-KMAAVVYVRRGEQMHAVDEF 272


>gi|110680226|ref|YP_683233.1| hypothetical protein RD1_3034 [Roseobacter denitrificans OCh 114]
 gi|109456342|gb|ABG32547.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
          Length = 456

 Score = 80.0 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 75/291 (25%), Gaps = 35/291 (12%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134
            I  GRG GKT   A  +   +             +  +  +  Q++  +    S  L+ 
Sbjct: 63  VIMGGRGAGKTRAGAEWVRAQVEGARPLDEGRSRRVALVGETIEQVREVMIFGDSGILAC 122

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
            P       ++                               +        G       A
Sbjct: 123 SPPDRRPVWEAGRKRL------------------VWPNGAIATIHSAFDPEGLRGPQFDA 164

Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
            + DE +           +       +  +  +    T R  G    +   P      + 
Sbjct: 165 AWVDELAKWKKAQDTWDMLQFALRLGDKPQVCVT--TTPRNVGVLKTLMKSPST-VSSHA 221

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
                   +   F E + +RY     + R E+ G   +           IE    R    
Sbjct: 222 PTEANAANLARSFLEEVRARYAGT-RLGRQELDGVLLEDAEGALWTTAGIEG--IRCEQA 278

Query: 313 DLYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360
                +++  D    +G   D+  ++     +     DW A ++ +   +G
Sbjct: 279 PELDRIVVAVDPSTTSGANSDECGIIVAGVKMAGAPQDWRAYVLADCTVQG 329


>gi|254465926|ref|ZP_05079337.1| phage DNA Packaging Protein [Rhodobacterales bacterium Y4I]
 gi|206686834|gb|EDZ47316.1| phage DNA Packaging Protein [Rhodobacterales bacterium Y4I]
          Length = 428

 Score = 80.0 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 76/303 (25%), Gaps = 35/303 (11%)

Query: 70  VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNT 123
               +       I  GRG GKT   A  +  L              I  +A +  Q+++ 
Sbjct: 24  QRPPDGDWRAWVILGGRGAGKTRAGAEWVRSLAEGARPHDPGTARRIALVAETYDQVRDV 83

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
           +    S  L+  P     + ++                                      
Sbjct: 84  MIHGDSGILACSPPDRRPKWKASERKL------------------IWPNGAEAQAFSAHD 125

Query: 184 FVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
                     A + DE +           +          R  +    T R       + 
Sbjct: 126 PEALRGPQFDAAWADELAKWRKGQESWDMLQFALRLGQDPRVCVT--TTPRNAPVLKRLL 183

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301
             P    + +         +   F E + SRY     + R E+ G               
Sbjct: 184 ASPST-VQTHAATEANRANLAPSFLEEVRSRYAGT-RLGRQELDGVMLSDIQGALWTTAA 241

Query: 302 IEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQ 358
           + EA   EA       +++  D    AG+  D   +V           DW A ++ +   
Sbjct: 242 LVEAQVAEAPP--LDRVVVAVDPAVSAGKDSDACGIVVAGAVTRGKPQDWQAYVLADCTV 299

Query: 359 EGC 361
           +G 
Sbjct: 300 QGV 302


>gi|114569469|ref|YP_756149.1| hypothetical protein Mmar10_0918 [Maricaulis maris MCS10]
 gi|114339931|gb|ABI65211.1| protein of unknown function DUF264 [Maricaulis maris MCS10]
          Length = 450

 Score = 79.6 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 43/315 (13%), Positives = 85/315 (26%), Gaps = 31/315 (9%)

Query: 31  FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI-SAGRGIG 89
           FV  F+   ++ +      +  R + + +     H  +      P  +   +   GRG G
Sbjct: 13  FVDTFWMQTMRERERAWHKEADRQERDAIHTDFRHRATGPQLPPPGEWLTWLFLGGRGAG 72

Query: 90  KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLH 149
           KT   A  +      R    I  +  +   ++  +             +H         +
Sbjct: 73  KTRAGAEWVRHRAL-RTVSRIALVGPTFNDVREVMIE------GPSGLKHLGSAMERPRY 125

Query: 150 PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII-- 207
            +               +    +         +   G         + DE +  PD    
Sbjct: 126 EA------------SRKRLVFPSGSQAYAFSAEDADGLRGPQFDYAWGDEFAAWPDPQRV 173

Query: 208 NKSILGFFTELNPNRFWIMTSNTRRLNGWF---YDIFNIPLEDWKRYQIDTRTVEGIDSG 264
             ++          R  I+ + T R           ++        +Q        +  G
Sbjct: 174 LDTLRMGVRLGGAPR--ILLTTTPRPIPALKALVKAWDPRGPIRVTHQPTAANAANLAPG 231

Query: 265 FHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI 324
           F E + + YG  S + R E+ G               IE A            +++  D 
Sbjct: 232 FVEALNAAYGG-SMLGRQEVEGLLIDDPDGALWTRPKIEAARLAAGQMPELDRIVVALDP 290

Query: 325 AGEGG---DKTVVVF 336
              GG   D+  +V 
Sbjct: 291 PATGGPRSDECGIVV 305


>gi|255262025|ref|ZP_05341367.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
 gi|255104360|gb|EET47034.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
          Length = 510

 Score = 79.6 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/267 (10%), Positives = 56/267 (20%), Gaps = 35/267 (13%)

Query: 81  AISAGRGIGKTTLNAWMMLWL------ISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
            I  GRG GKT   A  +         +   P   +  +  +  Q +  +    S  L+ 
Sbjct: 11  VILGGRGAGKTRAGAEWVRAQVEGSGPLDVGPATRVALVGETIEQAREVMVFGESGILAC 70

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
            P        +                                                A
Sbjct: 71  SPDDRRPVWSTTRRQL------------------CWPNGAVAQLFSASDPERLRGPQFDA 112

Query: 195 VFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
            + DE +           +       +  R  +    T R  G    +  +         
Sbjct: 113 AWVDELAKWKKGQEAWDMLQFGMRLGDDPRVCVT--TTPRNVGVLRSL--LARSSTVTAH 168

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
             T       +      +      + + R E+ G               +E +       
Sbjct: 169 GTTEANAAHLADAFLDEVRTRYAGTRLGRQELDGVLLADAEGALWTSKGLEASHVEVVP- 227

Query: 313 DLYAPLIMGCDI---AGEGGDKTVVVF 336
                +++  D       G D   ++ 
Sbjct: 228 -QCDRVLVSVDPPVTGHMGSDDCGIIV 253


>gi|83945577|ref|ZP_00957923.1| Phage DNA Packaging Protein [Oceanicaulis alexandrii HTCC2633]
 gi|83850943|gb|EAP88802.1| Phage DNA Packaging Protein [Oceanicaulis alexandrii HTCC2633]
          Length = 410

 Score = 79.6 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 76/274 (27%), Gaps = 31/274 (11%)

Query: 68  SNVNNSNPTIFKCAI-SAGRGIGKTTLNAWMMLWLISTRPGMS-IICIANSETQLKNTLW 125
            +     P  ++  +   GRG GKT   A  +      + G   I  +A + + ++  + 
Sbjct: 21  RDAQKPPPGDWRIWLFLGGRGAGKTRAGAEWI--RAQVKAGCRRIALVAPTFSDVREVMV 78

Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185
           +  S +L++         ++                                    +   
Sbjct: 79  SGPSGFLNIGEEDERPRYEASRHRL------------------IWPNGAEAHGFSSEDPD 120

Query: 186 GPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243
           G         + DE +    P      +          R  I    T R           
Sbjct: 121 GLRGPQFDCAWVDEFAAWTRPQETLDMLGLGLRLGEDPRLMIT--TTPRPI-PALKALLK 177

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
                  +         +  GF   +  RYG  S +AR E+ G             + I+
Sbjct: 178 QAGVVMTHAATEANAANLAPGFVAAMTDRYG-ASRLARQELEGVLIDDPDGALWTRDLID 236

Query: 304 EAMSREAIDDLYAPLIMGCD-IAGEGGDKTVVVF 336
           +A+   A +     +++  D  A   GD+  ++ 
Sbjct: 237 QALGLPAFEPE--RVVVAVDPPASATGDECGIIV 268


>gi|163742707|ref|ZP_02150092.1| terminase, large subunit, putative [Phaeobacter gallaeciensis 2.10]
 gi|161383962|gb|EDQ08346.1| terminase, large subunit, putative [Phaeobacter gallaeciensis 2.10]
          Length = 417

 Score = 79.6 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 79/292 (27%), Gaps = 35/292 (11%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134
            I  GRG GKT   A  +  L              I  +  +  Q+++ +    S  L+ 
Sbjct: 24  VILGGRGAGKTRAGAEWVRTLAEGATPLSAGRARRIALLGETYDQVRDVMVQGDSGLLAC 83

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
            P       ++                             T                  A
Sbjct: 84  TPRDRRPTWKATERRL------------------IWPNGATAQAFSAHDPEALRGPQFDA 125

Query: 195 VFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
            + DE +           +       +  R  +    T R  G   ++   P    + + 
Sbjct: 126 AWADELAKWKRGQDSWDMLQFALRLGDDPRVCVT--TTPRNVGVLRELLASPST-VQTHA 182

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
                   + + F   + +RY   S + R E+ G   Q        +  +  A    A  
Sbjct: 183 ATEANRANLAASFLAEVRNRYAG-SRLGRQELDGILLQDIEGALWTNAGLVAAQI--AKA 239

Query: 313 DLYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC 361
                +++  D    AG+  D   +V     +     DW A ++ +   +G 
Sbjct: 240 PTLDRVVVAVDPAVSAGKHSDACGIVVVGATLQGPPQDWCAYVLADCTVQGV 291


>gi|194100357|ref|YP_002003787.1| gp19 [Enterobacteria phage EcoDS1]
 gi|193201352|gb|ACF15831.1| gp19 [Enterobacteria phage EcoDS1]
          Length = 587

 Score = 79.6 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 46/387 (11%), Positives = 92/387 (23%), Gaps = 91/387 (23%)

Query: 19  LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78
           LM A     F  F+  F  W     P+     P R Q++  + +    +           
Sbjct: 11  LMTARMKADFVFFL--FVLWKALSLPV-----PTRCQIDMAKKLSAGDNR---------- 53

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  + A RGIGK+ +    ++W +   P +  + ++ S+ +        + + + ++P  
Sbjct: 54  RFILQAFRGIGKSFITCAFVVWKLWNNPDLKFMIVSASKERADANSIF-IKRIIDLMPQL 112

Query: 139 HWFEMQSLSLHPSGWYAE-LLEQSMGIDSKHYTITCRTY----------SEERPDTFVGP 187
              + +         +     +       K   IT +              E P+     
Sbjct: 113 QELKPKQGQRDAVISFDVGPAKPDHSPSVKSVGITGQLTGSRADILIADDVEVPNNSATQ 172

Query: 188 HNTHGMAVFNDEASGT------------PDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
                ++    E                P                   W      R    
Sbjct: 173 AARDRLSELVKEFDAILKPGGTIIYLGTPQNEMTLYRELEGRGYTTTIWPARY-PRDKKD 231

Query: 236 WFYDIFNIP-------LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
           W      +         ED + +          D    +     YG      +  +    
Sbjct: 232 WQSYGDRLAPMLQAELEEDPESFYWRPTDEVRFDDTDLKERELSYGKAGFALQFML---N 288

Query: 289 PQQEVNNFIPHNYIE----------EAMSREAIDDL------------------------ 314
           P        P    +            M  + + +                         
Sbjct: 289 PNLSDAEKYPLKLRDLIVADLDPSSSPMVYQWLPNPQNKREDVPNVGLMGDSYHTYQTVG 348

Query: 315 -----YAPLIMGCDIAGEGGDKTVVVF 336
                Y   I+  D +G G D+T    
Sbjct: 349 SAFSSYTQKILVIDPSGRGKDETGYAV 375


>gi|307294267|ref|ZP_07574111.1| hypothetical protein SphchDRAFT_1737 [Sphingobium chlorophenolicum
           L-1]
 gi|306880418|gb|EFN11635.1| hypothetical protein SphchDRAFT_1737 [Sphingobium chlorophenolicum
           L-1]
          Length = 438

 Score = 79.6 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/257 (12%), Positives = 65/257 (25%), Gaps = 22/257 (8%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           + AGRG GKT   A  +  +    P   I  +  +  + +  +    S  L++ P  +  
Sbjct: 57  MMAGRGFGKTRAGAEWVRSVAEGDPAARIALVGATLGEARAVMVEGASGVLAVSPWWNRP 116

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
                                              +                  + DE +
Sbjct: 117 AFLPALRKL------------------VWRNGAVATLFGAAEAESLRGPQFSHGWADEIA 158

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV-EG 260
                                  ++ + T R       +      D    +  +      
Sbjct: 159 KWAGGQAAWDNLMMGMRLGIAPRVLATTTPRPVALVRGLVERNGSDVVVTRGRSADNASH 218

Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIM 320
           +  GF   +   YG    + R E+ G+  ++        + +E            A +++
Sbjct: 219 LADGFLAAMERNYGGT-RLGRQELDGELIEEVEGALWSRDLLERCRVAHVRGT-LARVVV 276

Query: 321 GCD-IAGEGGDKTVVVF 336
             D  A   GD   +V 
Sbjct: 277 AVDPPASVHGDACGIVV 293


>gi|294011207|ref|YP_003544667.1| hypothetical protein SJA_C1-12210 [Sphingobium japonicum UT26S]
 gi|292674537|dbj|BAI96055.1| conserved hypothetical protein [Sphingobium japonicum UT26S]
          Length = 437

 Score = 79.6 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/256 (12%), Positives = 66/256 (25%), Gaps = 20/256 (7%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           + AGRG GKT   A  +  +  + P   I  +  +  + +  +    S  L++ P     
Sbjct: 56  MLAGRGFGKTRAGAEWVRSVAESDPKARIALVGATLGEARAVMVEGASGILAVAP----- 110

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
                       +A  L        K         +                  + DE +
Sbjct: 111 ------WWNRPVFAPALR-------KLVWPNGAVATLYGAAEAESLRGPQFSHGWADEIA 157

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI 261
                                  ++ + T R       +      D    +  T      
Sbjct: 158 KWAGGQAAWDNLMMGMRLGGAPRVLATTTPRPVPLVRGLVARAGGDVVVTRGRTADNVAH 217

Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMG 321
            +      + R    + + R E+ G+  ++        + +E              +++ 
Sbjct: 218 LADGFLAAMERSYGGTRLGRQELDGELIEEVEGALWSRDLLERCRVAHVR-GGLTRVVVA 276

Query: 322 CD-IAGEGGDKTVVVF 336
            D  A   GD   +V 
Sbjct: 277 VDPPASAHGDACGIVV 292


>gi|239828154|ref|YP_002950778.1| hypothetical protein GWCH70_2829 [Geobacillus sp. WCH70]
 gi|239808447|gb|ACS25512.1| conserved hypothetical protein [Geobacillus sp. WCH70]
          Length = 534

 Score = 79.6 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 64/436 (14%), Positives = 120/436 (27%), Gaps = 124/436 (28%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           M + ++ ++KL+  +++  + A+      NF+         G  +     P   Q +FM 
Sbjct: 1   MAKRLTKEEKLKIIMNDFKLFAK------NFIKIV---DNNGDTVPFVLNPE--QEQFMG 49

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +  +                I  GR IG TTL+   ML+   T+P  + I + +    +
Sbjct: 50  QMGKYN--------------IILKGRQIGFTTLSLAYMLYSACTKPDTNYIIMTH-HASV 94

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
             +L+ ++ K    LPH  + +     L P        E  +   S+    T +      
Sbjct: 95  SKSLFVKLKKMYRSLPHEKYPD-----LFPKALLNNRDELYLQNGSRVIIATAQGEDVIS 149

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF--TELNPNRFWIMTSNTRRLNGWFY 238
            +TF   H          E +  P  +   I+              I+  +T      + 
Sbjct: 150 GNTFQLIH--------LSEMAKYPQDVQDEIIATCIPALAKNESSSIIIESTAYGYNTYQ 201

Query: 239 DIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG------------ 286
           ++F     D +           +   + +     +       R    G            
Sbjct: 202 EMFMKAYRDKESVWKAHFYS-WLAKAYEKQFKHTFDEAEAWFRANNQGRRMTYEDLDHDE 260

Query: 287 -------------------------------QFPQQEVNNF------------------I 297
                                          +FP      F                   
Sbjct: 261 KILKDKYGATYRQLMFRRYYIATNSLDKFKREFPTTPDEAFAESNKSIFDTNKIIERLQY 320

Query: 298 PHNYIEEAMSREAIDDLYAPLI-----------------MGCDIA-GEGG--DKTVVVFR 337
               IE     + + D+  P I                  G D+A G GG  D T +   
Sbjct: 321 VIQPIETKEIYDILPDVLKPYINKNLFIYHLPKPKVRHYAGVDVASGTGGNNDYTAISIL 380

Query: 338 RGNIIEHIFDWSAKLI 353
             +  + +  W +  I
Sbjct: 381 DADG-QQVASWYSNDI 395


>gi|325292327|ref|YP_004278191.1| large terminase phage packaging protein [Agrobacterium sp. H13-3]
 gi|325060180|gb|ADY63871.1| large terminase phage packaging protein [Agrobacterium sp. H13-3]
          Length = 419

 Score = 79.6 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/288 (12%), Positives = 73/288 (25%), Gaps = 35/288 (12%)

Query: 55  QLEFMEAVDV--HCHSNVNNSNPTIFKCAIS-AGRGIGKTTLNAWMM--LWLISTRPGMS 109
           Q +    +       +         ++  +   GRG GKT   A  +  +     +  + 
Sbjct: 11  QKQVFTLLRDWRFIGNLPQQPPEGDWRTWLLIGGRGSGKTRAGAEWVHRIASAGKQSDLR 70

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLP-HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
           I  +A +    +  +   +S    +    R  FE+    L                    
Sbjct: 71  IALVAETLGDAREVMIDGISGICRIARRCRPAFEVSRRRL-------------------- 110

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIM 226
                        +             + DE      P      +          R  + 
Sbjct: 111 IWPNGAMAQVFSSEDPESLRGPQFHMAWADELGKWKYPQETWDMLQFGLRLGEAPRQLVT 170

Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
              T R       +   P              + +  GF + +  RYG    + R EI G
Sbjct: 171 --TTPRPIPLLKALLADPSSR-VAKMPTAMNAQNLSPGFLKAMHDRYGGT-RLGRQEIGG 226

Query: 287 QFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD-IAGEGGDKTV 333
           +   +          +E  +  +      A +++  D  AG G +   
Sbjct: 227 ELIDEREGALWKRADLEAIVETDHEP--LARIVVAVDPPAGIGENSCC 272


>gi|251778523|ref|ZP_04821443.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|243082838|gb|EES48728.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 448

 Score = 79.2 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 79/278 (28%), Gaps = 22/278 (7%)

Query: 60  EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
           +++    +     +  T F      G G GK+      M+      P    + I      
Sbjct: 25  KSIFNDAYLPQLQNYQTRFNI-YYGGAGSGKSHFVVQKMILKYLEYPNRKCLVIRKVGNS 83

Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
           L+++++       ++L   H  E   +              S+ + +    I       E
Sbjct: 84  LRDSIFELFK---TVLSDWHLLERCEIRDSL---------LSITLPNGSTFIFKGLDDSE 131

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
           +  +       +   +  +E +         +       N      +  N    + W Y+
Sbjct: 132 KIKSI-----ANIDDIVVEECTEIDKQEFSQLGLRLRSKNGYNQIHVMFNPISKSNWVYE 186

Query: 240 IF---NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
           ++        D    +   +  + +   +   +I     D    RI  LG+F   +   +
Sbjct: 187 MWFQNGYDESDTMVLKTTYKDNKFLPYDYINALIKMKETDPVYYRIYALGEFASLDKLIY 246

Query: 297 IPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334
                ++    +      YA    G D  G   D +  
Sbjct: 247 TNWEELDFDWRKLMQQRPYAKACFGLDF-GYVNDPSAF 283


>gi|86138748|ref|ZP_01057320.1| terminase, large subunit, putative [Roseobacter sp. MED193]
 gi|85824395|gb|EAQ44598.1| terminase, large subunit, putative [Roseobacter sp. MED193]
          Length = 417

 Score = 79.2 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/313 (11%), Positives = 77/313 (24%), Gaps = 38/313 (12%)

Query: 62  VDVHCHSNVNNSNPTIFKCAI-SAGRGIGKTTLNAWMMLWLIST------RPGMSIICIA 114
           +               ++  +   GRG GKT   A  +   +          G  +  I 
Sbjct: 4   LFEFWAHAHQLPPSGEWRTWVILGGRGAGKTRAGAEWIRTQVEGATPLGPGRGRRLALIG 63

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            +  Q+++ +    S  L+  P     + ++                             
Sbjct: 64  ETYDQVRDVMILGDSGILACSPSDRRPQWKAGERKL------------------IWANGA 105

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRR 232
                                + DE +           +       +  R  +    T R
Sbjct: 106 MAQAFSAHDPEALRGPQFDTAWADELAKWRRAREAWDMLQFSLRLGDDPRVCVT--TTPR 163

Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292
                  +   P    K +         +   F   + +RY   S + R E+ G      
Sbjct: 164 NAALLRQLLASPST-VKSHAATEANRANLAPSFLSEVRARYAG-SRLGRQELDGILLSDV 221

Query: 293 VNNFIPHNYIEEAMSREAIDDLY-APLIMGCDIA---GEGGDKTVVVFRRGNIIEHIFDW 348
                    +      +         +++  D A   G+G D   ++     +   +  W
Sbjct: 222 EGAIWRAAQL---AELQVPTAPALDRIVVAVDPAVSSGKGSDACGIIVAGACLQGPVETW 278

Query: 349 SAKLIQETNQEGC 361
            A ++ +   +G 
Sbjct: 279 RAYVLADRTVQGV 291


>gi|316934938|ref|YP_004109920.1| hypothetical protein Rpdx1_3618 [Rhodopseudomonas palustris DX-1]
 gi|315602652|gb|ADU45187.1| hypothetical protein Rpdx1_3618 [Rhodopseudomonas palustris DX-1]
          Length = 431

 Score = 79.2 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 71/264 (26%), Gaps = 35/264 (13%)

Query: 82  ISAGRGIGKTTLNAWMMLWLI------STRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
           +  GRG GKT   A  +  ++      +TRP   I  +  S    +  +    S  L + 
Sbjct: 46  MLGGRGAGKTRAGAEWVRAMVAGTPPYATRPHGRIALVGESWHDAREVMVEGESGLLRIT 105

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
           P R   E  +                                    D           A 
Sbjct: 106 PRRERPEWIATRKRLE------------------WPNGAVGEVFSADDPDSLRGPQFEAA 147

Query: 196 FNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253
           + DE +     +     +       +  R   + + T R       +   P         
Sbjct: 148 WCDELAKWRYAEASFDMLQFGLRLGSRPRQ--LITTTPRPLPLIKRLLADPHTR-VTRAP 204

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
                  +   F E +++RY       R E+ G+  +   +     + IE A  R     
Sbjct: 205 TRANAAHLSPAFLETVVARYAGT-RQGRQELDGELIEDRPDALWSRDRIERA--RVGAAP 261

Query: 314 LYAPLIMGCDI---AGEGGDKTVV 334
               +++  D    +  G D   +
Sbjct: 262 PMVRIVVAIDPPGSSRPGADACGI 285


>gi|163731339|ref|ZP_02138786.1| hypothetical protein RLO149_18584 [Roseobacter litoralis Och 149]
 gi|161394793|gb|EDQ19115.1| hypothetical protein RLO149_18584 [Roseobacter litoralis Och 149]
          Length = 286

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 76/296 (25%), Gaps = 36/296 (12%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134
            I  GRG GKT   A  +   +             +  +  +  Q++  +    S  L+ 
Sbjct: 15  VIMGGRGAGKTRAGAEWVRAQVEGARPLDEGRSRRVALVGETIEQVREVMIFGDSGILAC 74

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
            P       ++                               +                A
Sbjct: 75  SPPDRRPVWEAGRKRL------------------VWPNGAIATIHSAFDPEELRGPQFDA 116

Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
            + DE +           +       +  +  +    T R  G    +   P      + 
Sbjct: 117 AWVDELAKWKKAQDTWDMLQFALRLGDKPQVCVT--TTPRNVGVLKTLMKSPST-VSSHA 173

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
                   +   F E + +RY     + R E+ G   +           IE    R    
Sbjct: 174 PTEANAANLARSFLEEVRARYAGT-RLGRQELDGVLLEDAEGALWTTAGIEG--IRCEKA 230

Query: 313 DLYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG-CPVG 364
                +++  D    +G   D+  ++     +     DW A ++ +   +G  P G
Sbjct: 231 PELDRIVVAVDPSTTSGANSDECGIIVAGVKMAGAPQDWRAYVLADCTVQGASPAG 286


>gi|224796473|ref|YP_002641230.1| phage terminase, large subunit, pbsx family [Borrelia spielmanii
           A14S]
 gi|224497687|gb|ACN53304.1| phage terminase, large subunit, pbsx family [Borrelia spielmanii
           A14S]
          Length = 450

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 85/289 (29%), Gaps = 45/289 (15%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMS 109
           Q E +  ++ H             K   S G   GKT L +++++  +           +
Sbjct: 49  QKEVLFDIESH----------KYSKVIFSGGIASGKTFLASYLLIKKLIENKSFYEQDTN 98

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
              I NS + L      ++ K   +L    + + +S          EL            
Sbjct: 99  NFIIGNSISLLMTNTIKQIEKICRLLGI-DYQKKKSGQSFCKIAGFELN----------- 146

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                 Y  +  D F      +   ++ +EA+         +L    +       I  +N
Sbjct: 147 -----IYGGKNRDAFSKIRGGNSAIIYVNEATVIHKETLLEVLKRLRKG--KSIIIFDTN 199

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL-GQF 288
                 +F   +    + +K Y   T       + F E    +    S   +  +L G++
Sbjct: 200 PESPAHFFKTDYIENTDVFKTYNFTTYDNPLNSADFIETQ-EKLYKHSPAYKARVLYGEW 258

Query: 289 PQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
                ++                D  +   IM  D A   GGD T +  
Sbjct: 259 I-VNESSLFNEMIFN-------QDYEFKSPIMYIDPAFSVGGDNTAICV 299


>gi|219872451|ref|YP_002476937.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr]
 gi|219694305|gb|ACL34832.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr]
          Length = 450

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 84/288 (29%), Gaps = 43/288 (14%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMS 109
           Q E +  ++ H             K   S G   GKT L +++++  +           +
Sbjct: 49  QKEVLFDIESH----------DYSKVIFSGGIASGKTFLASYLLIKKLIENKSFYEKDTN 98

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
              I NS   L      ++ K    L    + + +S          EL            
Sbjct: 99  NFIIGNSIGLLMTNTIKQIEKICGFLGI-DYQKKKSGESFCKIAGLELN----------- 146

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                 Y  +  D+F      +   ++ +EA+         ++    +       I  +N
Sbjct: 147 -----IYGGKNRDSFSKIRGGNSAIIYVNEATVIHKETLLEVIKRLRKG--KAIIIFDTN 199

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
                 +F   F    + +K Y   T       + F E     Y          + G++ 
Sbjct: 200 PEGPTHFFKTDFIENKDVFKTYNFTTYDNPLNSADFIETQKKLYKHLPAYKARVLYGEWI 259

Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
             E   F      E   +++     +   IM  D A   GGD T +  
Sbjct: 260 LNESTLFN-----EMIFNQDYE---FKSPIMYIDPAFSVGGDNTAICV 299


>gi|297566322|ref|YP_003685294.1| hypothetical protein Mesil_1911 [Meiothermus silvanus DSM 9946]
 gi|296850771|gb|ADH63786.1| protein of unknown function DUF264 [Meiothermus silvanus DSM 9946]
          Length = 427

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 91/277 (32%), Gaps = 28/277 (10%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
           + + FK  + + R +GK+   +   +      P    + ++  E Q K            
Sbjct: 19  DQSRFKIGLWS-RQVGKSFAASLEAVLDCVAHPRSLWVFLSRGERQSKE--------LAE 69

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
                         ++   + AE  +  + + +    I+        P          G 
Sbjct: 70  KAQRHLEAIQVVAEMYDEPFDAESTQTVIRLPNGSRIIS-------LPANPDTARGYSGN 122

Query: 194 AVFNDEAS--GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF--NIPLEDWK 249
            V  DE +       I  ++    T  +      + S  +   G FY+I+      + W 
Sbjct: 123 -VLLDEFALHKDSREIWGALYPTIT-RSKRYRLRVLSTPKGQQGKFYEIWQPEPGGDLWS 180

Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309
           R+++D               + +   D  + + E L +F  +    ++P+  I    S +
Sbjct: 181 RHRVDIYDAVQQGLEVDPEELRKGLKDPVLWQQEYLLEFVDEAS-AWLPYELITSCESSQ 239

Query: 310 AIDDL--YAPLIMGCDIAGEGGDKTVVVF--RRGNII 342
           A  D      L +G DI     D +V+    R G+++
Sbjct: 240 ARTDGALEGDLYLGMDIGRH-RDLSVIWVAERVGDVL 275


>gi|291334627|gb|ADD94276.1| hypothetical protein Syncc9605_0456 [uncultured phage
           MedDCM-OCT-S04-C231]
          Length = 320

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 77/236 (32%), Gaps = 37/236 (15%)

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
             K+  W  + K +                 P  W     E  + I+     I   T   
Sbjct: 1   MAKDIAWRALKKLV-----------------PKVWIHSKNETDLRIE----LINGSTIEL 39

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTP-DIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
           +  +  +         V  DEA+    ++  + I       +   + +  S       WF
Sbjct: 40  KGTENAMALRGRSLSGVVLDEAAFMDAEVWFEVIRPALA--DKEGWALFISTPDGTASWF 97

Query: 238 YDIF----NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293
           YD++         +W+R+   T     +     E   ++   D+   R E    F  + +
Sbjct: 98  YDLWCYVPEDETGEWQRWSYTTIEGGNVSKHEVEAARAQL--DNRTFRQEFEASF--ENL 153

Query: 294 NNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGD-KTVVV-FRRGNIIEHIFD 347
              +  ++ +E +S+EA D    PL++G D      D  + +   + G  +    +
Sbjct: 154 TGLVAISFSDENISQEAKDISIQPLLLGVD---FNVDPMSGICAVKNGETLYVFDE 206


>gi|77118209|ref|YP_338131.1| maturation protein [Enterobacteria phage K1F]
 gi|72527953|gb|AAZ73005.1| maturation protein [Enterobacteria phage K1F]
          Length = 575

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/386 (11%), Positives = 91/386 (23%), Gaps = 91/386 (23%)

Query: 20  MHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFK 79
           M A     F  F+  F  W     P+     P R Q++  + +    +           +
Sbjct: 1   MTARMKADFVFFL--FVLWKALSLPV-----PTRCQIDMAKKLSAGDNR----------R 43

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             + A RGIGK+ +    ++W +   P +  + ++ S+ +        + + + ++P   
Sbjct: 44  FILQAFRGIGKSFITCAFVVWKLWNNPDLKFMIVSASKERADANSIF-IKRIIDLMPQLK 102

Query: 140 WFEMQSLSLHPSGWYAE-LLEQSMGIDSKHYTITCRTY----------SEERPDTFVGPH 188
             + +         +     +       K   IT +              E P+      
Sbjct: 103 ELKPKQGQRDAVISFDVGPAKPDHSPSVKSVGITGQLTGSRADILIADDVEVPNNSATQA 162

Query: 189 NTHGMAVFNDEASGT------------PDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
               ++    E                P                   W      R    W
Sbjct: 163 ARDRLSELVKEFDAILKPGGTIIYLGTPQNEMTLYRELEGRGYTTTIWPARY-PRDRKDW 221

Query: 237 FYDIFNIP-------LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
                 +         ED + +          D    +     YG      +  +    P
Sbjct: 222 QSYGDRLAPMLQAELEEDPESFYWRPTDEVRFDDTDLKERELSYGKAGFALQFML---NP 278

Query: 290 QQEVNNFIPHNYIE----------EAMSREAIDDL------------------------- 314
                   P    +            M  + + +                          
Sbjct: 279 NLSDAEKYPLKLRDLIVADLDPASSPMVYQWLPNPQNKREDVPNVGLMGDSYHTYQTVGS 338

Query: 315 ----YAPLIMGCDIAGEGGDKTVVVF 336
               Y   I+  D +G G D+T    
Sbjct: 339 AFSSYTQKILVIDPSGRGKDETGYAV 364


>gi|255321082|ref|ZP_05362250.1| gp33 TerL [Acinetobacter radioresistens SK82]
 gi|262379515|ref|ZP_06072671.1| bacteriophage TerL protein [Acinetobacter radioresistens SH164]
 gi|255301852|gb|EET81101.1| gp33 TerL [Acinetobacter radioresistens SK82]
 gi|262298972|gb|EEY86885.1| bacteriophage TerL protein [Acinetobacter radioresistens SH164]
          Length = 558

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 64/241 (26%), Gaps = 21/241 (8%)

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
             L H+       L          + +               T + E  D          
Sbjct: 152 KTLLHKFRDMYSKLPAWMKPKG-FIEKVHDNYMRIINPDNGATVTGEAGDNIG--RGGRT 208

Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
              F DE +       +++    ++       I  S    +   F+         +  + 
Sbjct: 209 TMYFLDEWAFVERQ--EAVDAAISQNTN--VHIKGSTPNGIGDKFHQD--RFSGRYAVFT 262

Query: 253 IDTRTVE--GIDSGFHEGIISRYGL------DSDVARIEILGQFPQQEVNNFIPHNYIEE 304
           +  R              +I  +        D  V   E+   +        IP  +++ 
Sbjct: 263 MAWRDNPDKNWQVELDGKLIYPWYEKQLATLDDIVLAQEVDIDYAASVEGVLIPSAWVQA 322

Query: 305 AMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS--AKLIQETNQEG 360
           A+        +         D+A EG DK     R G +++++  WS     I  T Q+ 
Sbjct: 323 AVDAHIKLGIEPSGERNGALDVADEGKDKNSFAARHGIVLQYLDTWSGIGDDIFGTTQKA 382

Query: 361 C 361
            
Sbjct: 383 I 383


>gi|291296347|ref|YP_003507745.1| hypothetical protein Mrub_1969 [Meiothermus ruber DSM 1279]
 gi|290471306|gb|ADD28725.1| protein of unknown function DUF264 [Meiothermus ruber DSM 1279]
          Length = 426

 Score = 78.8 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 81/270 (30%), Gaps = 27/270 (10%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
           + FK  + + R  GK+   +   +       G   I ++  E Q                
Sbjct: 20  SRFKIGLWS-RQTGKSFAASLEAVLDCLEHRGQLWIFLSRGERQSLE--------LAEKA 70

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
                       LH   +     +  +   +    I+        P          G  V
Sbjct: 71  KRHCEAIRAVAELHQEQFDVATKQYVIQFPNGSRIIS-------LPANPDTARGYSGS-V 122

Query: 196 FNDEASG--TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252
             DE         I  +I    T  N      + S     +G F++++   P + W R++
Sbjct: 123 LLDEFGFHQDSREIWGAIYPTIT-RNERYRIRVISTPNGQSGKFWELWQGGPGDVWSRHR 181

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA----MSR 308
           +D              ++ +   D    + E L +F ++    ++P++ +          
Sbjct: 182 VDIYDAVKEGLAIDPEVLRQGIRDPLKWQQEYLLEFVEEN-TAWLPYDLLATCESELART 240

Query: 309 EAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
           +   +    L +G DI  +  D +V+    
Sbjct: 241 DGELEREGELYLGMDIGRQ-RDLSVIWVIE 269


>gi|326536951|ref|YP_004306358.1| DNA packaging protein B [Pseudomonas phage phiIBB-PF7A]
 gi|318054527|gb|ADV35703.1| DNA packaging protein B [Pseudomonas phage phiIBB-PF7A]
          Length = 588

 Score = 78.4 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/399 (11%), Positives = 95/399 (23%), Gaps = 91/399 (22%)

Query: 24  CVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS 83
              SF  F+  F  W     P+     P + Q+   + +                +  + 
Sbjct: 14  LKGSFVAFL--FVLWAALNLPV-----PTKQQISMSKKLAAGDSR----------RFILQ 56

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           A RGIGK+ +    ++W +   P + I+ ++ ++ +        + + + +LP  H  + 
Sbjct: 57  AFRGIGKSFITCAFVVWKLWNNPDLKIMIVSANKDRADANSVF-IKRIIDLLPFLHELKP 115

Query: 144 QS-----------LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
           ++               P    +       G  +            E P           
Sbjct: 116 RAGQRDSSLSFDVGPARPDHSPSVKSVGVTGGMTGSRADILIADDVEVPGNSGTQSARDH 175

Query: 193 MAVFNDEASGT------------PDIINKSILGFFTELNPNRFWIMTSNTRRLNG---WF 237
           +     E                P                   W      R +     +F
Sbjct: 176 LGELVKEFDAILKPDGTIIYLGTPQTEMTLYRELEDRGYSTTIWPARY-PRDVADLESYF 234

Query: 238 YDIFNIPLEDWKRYQ---------IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ- 287
           +   N    D                       D          YG      +  +    
Sbjct: 235 HAKGNRSRLDPTMLAELEADSRLFWKPTDPVRFDDEDLRERELSYGKGGFALQFMLNPNL 294

Query: 288 -----FPQQEVNNFIPHNYIEEA--MSREAIDD--------------------------- 313
                +P +  +  +    +E A    +   +D                           
Sbjct: 295 SDIEKYPLKLRDWIVAALDMESAPTTWQWLPNDRNEAKGLPLVGLKGDRFHRYESCGTTT 354

Query: 314 -LYAPLIMGCDIAGEGGDKTVVVF-RRGNIIEHIFDWSA 350
             Y   I+  D +G G D+T      + N    + +W  
Sbjct: 355 AKYDQKILVIDPSGRGKDETGYCVLYQLNGYIFLMEWGG 393


>gi|90419122|ref|ZP_01227033.1| phage terminase large subunit [Aurantimonas manganoxydans SI85-9A1]
 gi|90337202|gb|EAS50907.1| phage terminase large subunit [Aurantimonas manganoxydans SI85-9A1]
          Length = 411

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 70/279 (25%), Gaps = 36/279 (12%)

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI------STRPGMSIICIANSETQL 120
             +         +  +  GRG GKT   A  +  +       + RP   I  IA +    
Sbjct: 14  RRSQLPPPGHWRQWLLIGGRGSGKTRAGAEWVRAMAAGAPPIAARPHGRIALIAETLGDA 73

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           +  + A  S  ++                      E          +             
Sbjct: 74  REVMIAGESGIVAAS-------------------VEGRPVYEVSRRRLVFPNGAIAQVFS 114

Query: 181 PDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
            +           A + DE +     +    ++          R   + + T R      
Sbjct: 115 SEDPDALRGYQFDAAWGDEFAKWVHGEACFDNLQFGLRLGVRPR--ALFTTTPRPI-PLL 171

Query: 239 DIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIP 298
                       +         +  GF   + +RYG  S + R E+ G   +   +    
Sbjct: 172 KQLMADAGTASTHMRTAENAANLAPGFLAAMEARYGG-SRLGRQELEGLMLEAREDALFD 230

Query: 299 HNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVV 334
              I+ A  R A       +++  D    A    D   +
Sbjct: 231 VAAIDAARVRVAP--ELRRVVVAVDPPATATTRSDACGI 267


>gi|317153313|ref|YP_004121361.1| hypothetical protein Daes_1602 [Desulfovibrio aespoeensis Aspo-2]
 gi|316943564|gb|ADU62615.1| hypothetical protein Daes_1602 [Desulfovibrio aespoeensis Aspo-2]
          Length = 507

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 67/253 (26%), Gaps = 29/253 (11%)

Query: 38  WGIKGKPLEHFSQPHRW--QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95
           WG         S    W  Q+E +  +  +                   GR +GK+ + +
Sbjct: 20  WGQAYLYNRDGSGRDYWPHQVEDLRCLARNIIHLD--------------GRDVGKSIVLS 65

Query: 96  WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
              L    T  G   +  A  +  L +++  E+   L   P        +    P     
Sbjct: 66  TDALHYAFTTRGGQGLIAAPHQGHL-DSIIEEIEYQLDTNPDLMNSIAVTKYGKPKIHRK 124

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
                     S  Y      Y            + H   V+ DE +   +   K++    
Sbjct: 125 PYFRLEFTNGSVLYFRPAGAY-------GDSFRSLHVGRVWVDEGAWLTERAWKALRQCL 177

Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS-RYG 274
                     + S    L    Y       + +  ++  +             ++    G
Sbjct: 178 KTGG---ILRIYSTPNGLRDTTYYRLTS-SDQFHVFRWPSWLNPLWTEDRESELLEFYGG 233

Query: 275 LDSDVARIEILGQ 287
            DS   + E+ G+
Sbjct: 234 RDSSGWQHEVAGE 246


>gi|85375635|ref|YP_459697.1| Phage DNA packaging protein [Erythrobacter litoralis HTCC2594]
 gi|84788718|gb|ABC64900.1| Phage DNA Packaging Protein [Erythrobacter litoralis HTCC2594]
          Length = 450

 Score = 78.1 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 80/278 (28%), Gaps = 30/278 (10%)

Query: 68  SNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126
            +        ++   I AGRG GKT   A  +  +        I  +  S  ++++ +  
Sbjct: 49  RDEQQPPEGPWRVWLICAGRGFGKTRAGAEWVRNVARHDGEARIALVGASLVEVRSVMVE 108

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
             S  L+  P               G  A   E S+             YS   P++   
Sbjct: 109 GESGVLAASP---------------GALAPEFEPSLRRLQWPNGAQAFLYSAGEPES--- 150

Query: 187 PHNTHGMAVFNDEASGTPD------IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
                    + DE +   +          ++       +  R  ++ + T R       +
Sbjct: 151 LRGPQHTHAWCDEIAKWDNAGLRALAAWDNLQMGMRLGDHPR--VLATTTPRTVALMQRL 208

Query: 241 FNIPLEDWKRY-QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299
           +           Q  T    G+    +   +      + + R E+ G+  ++        
Sbjct: 209 YAEVESGAVVLAQGKTEDNAGVLPTAYFEAMLDQYGATSLGRQELEGEMLEEVDGALWSR 268

Query: 300 NYIEEAMSREAIDDLYAPLIMGCD-IAGEGGDKTVVVF 336
             +E+             +++G D  A   GD   +V 
Sbjct: 269 ALLEQCR-TAGTGAERIRVVVGVDPPASSSGDACGIVV 305


>gi|297247965|ref|ZP_06931683.1| phage DNA packaging protein [Brucella abortus bv. 5 str. B3196]
 gi|297175134|gb|EFH34481.1| phage DNA packaging protein [Brucella abortus bv. 5 str. B3196]
          Length = 415

 Score = 78.1 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 78/295 (26%), Gaps = 39/295 (13%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTI--FKCA-ISAGRGIGKTTLNAWMMLWLISTRPG----- 107
            + + A D       +   P    ++   I  GRG GKT   A  +  +    P      
Sbjct: 6   RQILAAQDEWLIRARDAQLPPDGDWRVWLIMGGRGSGKTRAGAEWVSGMALGLPPFAGKP 65

Query: 108 -MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
              I  +  +    +  +    S  LS+         ++                     
Sbjct: 66  SGHIALVGETFNDAREVMVDGPSGILSVSRL-VRPRYEASRRRL---------------- 108

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFW 224
                     +    +           A + DE +    P      +       +  R  
Sbjct: 109 --IWDNGAVATLFSSEDPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPR-Q 165

Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
           ++T+  R +                 +         +  GF + I  RY     + R E+
Sbjct: 166 VVTTTPRAV--PLLKALLTDRTVSMTHMRTAENAGNLAEGFMQTIARRYAGT-RLGRQEL 222

Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVVVF 336
            G+  ++        + IE+           A +++  D    +G+  D   +V 
Sbjct: 223 DGELVEERPGALWSRDRIEQCFEEN--PPPLARIVVAVDPPASSGKASDACGIVV 275


>gi|183600815|ref|ZP_02962308.1| hypothetical protein PROSTU_04416 [Providencia stuartii ATCC 25827]
 gi|188019600|gb|EDU57640.1| hypothetical protein PROSTU_04416 [Providencia stuartii ATCC 25827]
          Length = 413

 Score = 78.1 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 77/274 (28%), Gaps = 27/274 (9%)

Query: 69  NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL----ISTRPGMSIICIANSETQLKNTL 124
            V  +    ++ A   GRG  KT   A M                I+C       L+ + 
Sbjct: 14  PVFENEGVRYRGAY-GGRGSAKTRTFALMTAIRGYMAAMNGQSGVILCAREYMNSLEESS 72

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
             EV + +  +P                W ++  E                ++  R +  
Sbjct: 73  MEEVKQAIRSVP----------------WLSDFYELGEKYIRTKCRSVSYVFAGLRHNLD 116

Query: 185 VGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-I 243
                   +  + DEA    +I    +     E      W+   N  +        F   
Sbjct: 117 SIKSKARILIAWVDEAESVSEIAWTKLAPTVREAGSE-IWVTW-NPEKDGSATDKRFRKE 174

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYI 302
           P ++    +++        S   E  +S     D +       G + +      + + Y+
Sbjct: 175 PPDNAIIVEMNYDDNPWFPSVLEEERLSDQSRLDPNTYAWIWEGAYLENSDKQVLANKYV 234

Query: 303 EEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
            ++   + +      L+ G D  G   D   ++ 
Sbjct: 235 VQSF-PDDLWKQADRLLFGADF-GFAKDPNTLIR 266


>gi|322835667|ref|YP_004215693.1| terminase large subunit [Rahnella sp. Y9602]
 gi|321170868|gb|ADW76566.1| terminase large subunit [Rahnella sp. Y9602]
          Length = 539

 Score = 78.1 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/369 (13%), Positives = 97/369 (26%), Gaps = 50/369 (13%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIKGKPL-EHFSQPH--- 52
           P      +   + L  +    E + +   F           WG+   P    F  P    
Sbjct: 12  PDYGQVFEWRMERLQRIRQQPEMLPALNAFYRDNPAQFIIDWGMTTDPRNLDFGMPVSVP 71

Query: 53  ----RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108
                 Q E++  +        N              R +G +  +  +   L      M
Sbjct: 72  FLLFPKQEEWINWIMDRRSQQENGITEKS--------REMGLSWTSIGLACALCLFNKEM 123

Query: 109 SIICIANSETQLKNT-----LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
            I   +  E  + +T     L+ +  K++ MLP        +    P             
Sbjct: 124 VIGFGSRKEEYVDSTGDPKALFWKARKFVEMLPVEFRGGWSAKKHAPYMRVEFP------ 177

Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
                          +                F DEA+     +        T       
Sbjct: 178 ---------TTGAVLKGEAGDNIGRGDRTTLYFVDEAAFLQRPLLIEASLSQTTRCR--- 225

Query: 224 WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283
            I  S+   +   F    +        +    R+    D  ++    ++   +  V   E
Sbjct: 226 -IDLSSVNGMANPFAQKRHG--GRIPVFTFHWRSDPRKDEAWYAKECAKI-DNPVVVAQE 281

Query: 284 ILGQFPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNI 341
           +   +        IP+ +I  A++             +   D+A EG DK     R G +
Sbjct: 282 LDLNYSASAEGVLIPNEWIRAAINAHIKLGIQPTGKRLGAMDVADEGRDKNAFSARYGFL 341

Query: 342 IEHIFDWSA 350
           +  + +WS 
Sbjct: 342 LTEVEEWSG 350


>gi|261315193|ref|ZP_05954390.1| phage DNA Packaging protein [Brucella pinnipedialis M163/99/10]
 gi|261304219|gb|EEY07716.1| phage DNA Packaging protein [Brucella pinnipedialis M163/99/10]
          Length = 329

 Score = 78.1 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 78/295 (26%), Gaps = 39/295 (13%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTI--FKCA-ISAGRGIGKTTLNAWMMLWLISTRPG----- 107
            + + A D       +   P    ++   I  GRG GKT   A  +  +    P      
Sbjct: 6   RQILAAQDEWLIRARDAQLPPDGDWRVWLIMGGRGSGKTRAGAEWVSGMALGLPPFAGKP 65

Query: 108 -MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
              I  +  +    +  +    S  LS+         ++                     
Sbjct: 66  SGHIALVGETFNDAREVMVDGPSGILSVSRL-VRPRYEASRRRL---------------- 108

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFW 224
                     +    +           A + DE +    P      +       +  R  
Sbjct: 109 --IWDNGAVATLFSSEDPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPR-Q 165

Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
           ++T+  R +                 +         +  GF + I  RY     + R E+
Sbjct: 166 VVTTTPRAV--PLLKALLTDRTVSMTHMRTAENAGNLAEGFMQTIARRYAGT-RLGRQEL 222

Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVVVF 336
            G+  ++        + IE+           A +++  D    +G+  D   +V 
Sbjct: 223 DGELVEERPGALWSRDRIEQCFEEN--PPPLARIVVAVDPPASSGKASDACGIVV 275


>gi|256369024|ref|YP_003106532.1| phage terminase large subunit, putative [Brucella microti CCM 4915]
 gi|255999184|gb|ACU47583.1| phage terminase large subunit, putative [Brucella microti CCM 4915]
          Length = 384

 Score = 78.1 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 69/265 (26%), Gaps = 36/265 (13%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSMLP 136
             GRG GKT   A  +  +    P         I  +  +    +  +    S  LS+  
Sbjct: 1   MGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVSR 60

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
                  ++                               +    +           A +
Sbjct: 61  L-VRPRYEASRRRL------------------IWDNGAVATLFSSEDPDSLRGPQFDAAW 101

Query: 197 NDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254
            DE +    P      +       +  R  ++T+  R +                 +   
Sbjct: 102 CDELAKWKNPQETWDMLQFGLRLGDNPR-QVVTTTPRAV--PLLKALLTDRTVSMTHMRT 158

Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314
                 +  GF + I  RY     + R E+ G+  ++        + IE+          
Sbjct: 159 AENAGNLAEGFMQTIARRYAGT-RLGRQELDGELVEERPGALWSRDRIEQCFEEN--PPP 215

Query: 315 YAPLIMGCDI---AGEGGDKTVVVF 336
            A +++  D    +G+  D   +V 
Sbjct: 216 LARIVVAVDPPASSGKASDACGIVV 240


>gi|17987633|ref|NP_540267.1| Phage DNA packaging protein [Brucella melitensis bv. 1 str. 16M]
 gi|260563648|ref|ZP_05834134.1| ATP/GTP-binding site-containing protein A [Brucella melitensis bv.
           1 str. 16M]
 gi|260566826|ref|ZP_05837296.1| ATP/GTP-binding site-containing protein A [Brucella suis bv. 4 str.
           40]
 gi|261219037|ref|ZP_05933318.1| phage DNA Packaging protein [Brucella ceti M13/05/1]
 gi|261221792|ref|ZP_05936073.1| phage DNA Packaging protein [Brucella ceti B1/94]
 gi|261321463|ref|ZP_05960660.1| phage DNA Packaging protein [Brucella ceti M644/93/1]
 gi|261324708|ref|ZP_05963905.1| phage DNA Packaging protein [Brucella neotomae 5K33]
 gi|261751918|ref|ZP_05995627.1| phage DNA Packaging protein [Brucella suis bv. 5 str. 513]
 gi|261754576|ref|ZP_05998285.1| phage DNA Packaging protein [Brucella suis bv. 3 str. 686]
 gi|265990705|ref|ZP_06103262.1| phage DNA Packaging protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994537|ref|ZP_06107094.1| phage DNA Packaging protein [Brucella melitensis bv. 3 str. Ether]
 gi|265997756|ref|ZP_06110313.1| phage DNA Packaging protein [Brucella ceti M490/95/1]
 gi|265999560|ref|ZP_05466908.2| ATP/GTP-binding site domain-containing protein A [Brucella
           melitensis bv. 2 str. 63/9]
 gi|17983344|gb|AAL52531.1| phage DNA packaging protein [Brucella melitensis bv. 1 str. 16M]
 gi|260153664|gb|EEW88756.1| ATP/GTP-binding site-containing protein A [Brucella melitensis bv.
           1 str. 16M]
 gi|260156344|gb|EEW91424.1| ATP/GTP-binding site-containing protein A [Brucella suis bv. 4 str.
           40]
 gi|260920376|gb|EEX87029.1| phage DNA Packaging protein [Brucella ceti B1/94]
 gi|260924126|gb|EEX90694.1| phage DNA Packaging protein [Brucella ceti M13/05/1]
 gi|261294153|gb|EEX97649.1| phage DNA Packaging protein [Brucella ceti M644/93/1]
 gi|261300688|gb|EEY04185.1| phage DNA Packaging protein [Brucella neotomae 5K33]
 gi|261741671|gb|EEY29597.1| phage DNA Packaging protein [Brucella suis bv. 5 str. 513]
 gi|261744329|gb|EEY32255.1| phage DNA Packaging protein [Brucella suis bv. 3 str. 686]
 gi|262552224|gb|EEZ08214.1| phage DNA Packaging protein [Brucella ceti M490/95/1]
 gi|262765650|gb|EEZ11439.1| phage DNA Packaging protein [Brucella melitensis bv. 3 str. Ether]
 gi|263001489|gb|EEZ14064.1| phage DNA Packaging protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094670|gb|EEZ18449.1| ATP/GTP-binding site domain-containing protein A [Brucella
           melitensis bv. 2 str. 63/9]
          Length = 430

 Score = 78.1 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 78/295 (26%), Gaps = 39/295 (13%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTI--FKCA-ISAGRGIGKTTLNAWMMLWLISTRPG----- 107
            + + A D       +   P    ++   I  GRG GKT   A  +  +    P      
Sbjct: 17  RQILAAQDEWLIRARDAQLPPDGDWRVWLIMGGRGSGKTRAGAEWVSGMALGLPPFAGKP 76

Query: 108 -MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
              I  +  +    +  +    S  LS+         ++                     
Sbjct: 77  SGHIALVGETFNDAREVMVDGPSGILSVSRL-VRPRYEASRRRL---------------- 119

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFW 224
                     +    +           A + DE +    P      +       +  R  
Sbjct: 120 --IWDNGAVATLFSSEDPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPR-Q 176

Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
           ++T+  R +                 +         +  GF + I  RY     + R E+
Sbjct: 177 VVTTTPRAV--PLLKALLTDRTVSMTHMRTAENAGNLAEGFMQTIARRYAGT-RLGRQEL 233

Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVVVF 336
            G+  ++        + IE+           A +++  D    +G+  D   +V 
Sbjct: 234 DGELVEERPGALWSRDRIEQCFEEN--PPPLARIVVAVDPPASSGKASDACGIVV 286


>gi|254471818|ref|ZP_05085219.1| phage DNA Packaging Protein [Pseudovibrio sp. JE062]
 gi|211959020|gb|EEA94219.1| phage DNA Packaging Protein [Pseudovibrio sp. JE062]
          Length = 428

 Score = 78.1 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/265 (10%), Positives = 65/265 (24%), Gaps = 38/265 (14%)

Query: 82  ISAGRGIGKTTLNAWMML-------WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
           +  GRG GKT      +        W  +  P  +I  +  +   ++  +   +S  L++
Sbjct: 45  LMGGRGAGKTRAGVEWVRGKTAGEPW--AGPPAGNIALVGQTYADVREVMIEGISGLLAV 102

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
            P     +                                       +           A
Sbjct: 103 HPPNQKPQWNPSRRRLE------------------WPNGAIARAFSSEDPEALRGPQFDA 144

Query: 195 VFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
            + DEA    +       +          +  +    T   +     +            
Sbjct: 145 AWCDEAGKWSNATETFDMLQFGLRLGTQPQQLV---TTTPKSTPLLKMLLQDQRVVVTKA 201

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
                   +   F + +  RYG    + R E+ G+  +   +      + E    R    
Sbjct: 202 GTKSNAAFLAEAFLQQMAERYGGT-RLGRQELDGELIEDREDALFARKWFEMNRVRHVP- 259

Query: 313 DLYAPLIMGCDI---AGEGGDKTVV 334
                +++  D    +G+  D   +
Sbjct: 260 -ELKRIVVAIDPPATSGKSADACGI 283


>gi|62181180|ref|YP_217597.1| hypothetical protein SC2610 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62128813|gb|AAX66516.1| orf, partial conserved hypothetical protein [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322715669|gb|EFZ07240.1| hypothetical protein SCA50_2790 [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 540

 Score = 78.1 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/356 (11%), Positives = 88/356 (24%), Gaps = 24/356 (6%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIKGKPLEHFSQPHRWQL 56
           P      +   + L  +  H E + + K F           WG+   P            
Sbjct: 12  PDYQMVFEWRMERLQRIRQHPEMLPALKQFYRTNPAQFIIDWGMTTDPRNIDYGLPVTIP 71

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
             +          +               R +G +     M   L      M I   +  
Sbjct: 72  FLLFPKQEEWVHWIMERWGKRENGITEKSREMGLSWTAIGMACSLCLFNKEMVIGFGSRK 131

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
           E  + ++     + +           ++         +A  +                  
Sbjct: 132 EEYV-DSTGDPKALFWKARKFVETLPVEFRGSWNEKKHAPYMRVEFP---------ETGA 181

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
             +                  DEA+     +        T        I  S+   +   
Sbjct: 182 VIKGEAGDNIGRGDRTTLYLVDEAAFLQRPLLIDAALSQTTRCR----IDLSSVNGMANP 237

Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
           F    +        +    R+    D  ++     +   +  V   E+   +        
Sbjct: 238 FAQKRHGGK--IPVFTFHWRSDPRKDDEWYRRECEKI-DNPVVVAQELDLNYSASAEGVL 294

Query: 297 IPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
           IP ++++ A+              +   D+A EG DK     R G ++E++ +WS 
Sbjct: 295 IPSDWVQAAVDAHIRLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSG 350


>gi|192291432|ref|YP_001992037.1| phage terminase, large subunit, PBSX family [Rhodopseudomonas
           palustris TIE-1]
 gi|192285181|gb|ACF01562.1| phage terminase, large subunit, PBSX family [Rhodopseudomonas
           palustris TIE-1]
          Length = 421

 Score = 78.1 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 61/249 (24%), Gaps = 26/249 (10%)

Query: 84  AGRGIGKTTLNAWMM----LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            GRG GKT   A M     +          I+C       L ++ +AEV           
Sbjct: 7   GGRGSGKTRTFAKMSAVRGIDFAQAGMDGVIVCGREFMNSLADSSFAEVK---------- 56

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                  ++  + W AE  +                +   R +            ++ DE
Sbjct: 57  ------AAILSTPWLAERYDVGDTYIRTKCRRIIFVFVGLRHNLDSIKSKARIRLLWVDE 110

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRYQIDTRTV 258
           A    D      +    E      W+   N  R        F   P    K  +++ R  
Sbjct: 111 AEPVSDEAWNITIPTVREEGSE-IWLTW-NPDRKASATNKRFRENPPAGAKIVELNWRDN 168

Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI---EEAMSREAIDDLY 315
                  +   +       D       G++       +         E+        D  
Sbjct: 169 PYFPEILNRTRLDDKANRPDQYGWVWEGEYRSVVAGAYYAKALTQAKEQGRITFVPLDPL 228

Query: 316 APLIMGCDI 324
             +    DI
Sbjct: 229 MQVRAYLDI 237


>gi|9632855|ref|NP_049779.1| gp17'' unknown function [Enterobacteria phage T4]
 gi|5354479|gb|AAD42686.1|AF158101_273 gp17'' unknown function [Enterobacteria phage T4]
 gi|299780524|gb|ADJ39886.1| gp17'' [Enterobacteria phage T4T]
          Length = 416

 Score = 78.1 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 57/226 (25%), Gaps = 33/226 (14%)

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
            R    ++ L         E  + S+ +D+                +           ++
Sbjct: 7   DRTKQAIELLPDFLQPGIVEWNKGSIELDNGSSI-------GAYASSPDAVRGNSFAMIY 59

Query: 197 NDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED------- 247
            DE +  P+      +I    +    ++  I+ + T      FYDI+   +E        
Sbjct: 60  IDECAFIPNFHDSWLAIQPVISSGRRSK--IIITTTPNGLNHFYDIWTAAVEGKSGFEPY 117

Query: 248 ---WKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI- 302
              W   +       +  D G+   I +  G      R E    F               
Sbjct: 118 TAIWNSVKERLYNDEDIFDDGWQWSIQTINGSSLAQFRQEHTAAFEGTSGTLISGMKLAV 177

Query: 303 ---------EEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVVFRR 338
                    +    +    +     I   D + G G D   +    
Sbjct: 178 MDFIEVTPDDHGFHQFKKPEPDRKYIATLDCSEGRGQDYHALHIID 223


>gi|261317250|ref|ZP_05956447.1| phage DNA Packaging protein [Brucella pinnipedialis B2/94]
 gi|265988289|ref|ZP_06100846.1| phage DNA Packaging protein [Brucella pinnipedialis M292/94/1]
 gi|261296473|gb|EEX99969.1| phage DNA Packaging protein [Brucella pinnipedialis B2/94]
 gi|264660486|gb|EEZ30747.1| phage DNA Packaging protein [Brucella pinnipedialis M292/94/1]
          Length = 430

 Score = 78.1 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 70/266 (26%), Gaps = 36/266 (13%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSML 135
           I  GRG GKT   A  +  +    P         I  +  +    +  +    S  LS+ 
Sbjct: 46  IMGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVS 105

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
                   ++                               +    +           A 
Sbjct: 106 RL-VRPRYEASRRRL------------------IWDNGAVATLFSSEDPDSLRGPQFDAA 146

Query: 196 FNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253
           + DE +    P      +       +  R  ++T+  R +                 +  
Sbjct: 147 WCDELAKWKNPQETWDMLQFGLRLGDNPR-QVVTTTPRAV--PLLKALLTDRTVSMTHMR 203

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
                  +  GF + I  RY     + R E+ G+  ++        + IE+         
Sbjct: 204 TAENAGNLAEGFMQTIARRYAGT-RLGRQELDGELVEERPGALWSRDRIEQCFEEN--PP 260

Query: 314 LYAPLIMGCDI---AGEGGDKTVVVF 336
             A +++  D    +G+  D   +V 
Sbjct: 261 PLARIVVAVDPPASSGKASDACGIVV 286


>gi|254709718|ref|ZP_05171529.1| Phage DNA packaging protein [Brucella pinnipedialis B2/94]
 gi|256031209|ref|ZP_05444823.1| Phage DNA packaging protein [Brucella pinnipedialis M292/94/1]
          Length = 411

 Score = 78.1 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 70/266 (26%), Gaps = 36/266 (13%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSML 135
           I  GRG GKT   A  +  +    P         I  +  +    +  +    S  LS+ 
Sbjct: 27  IMGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVS 86

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
                   ++                               +    +           A 
Sbjct: 87  RL-VRPRYEASRRRL------------------IWDNGAVATLFSSEDPDSLRGPQFDAA 127

Query: 196 FNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253
           + DE +    P      +       +  R  ++T+  R +                 +  
Sbjct: 128 WCDELAKWKNPQETWDMLQFGLRLGDNPR-QVVTTTPRAV--PLLKALLTDRTVSMTHMR 184

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
                  +  GF + I  RY     + R E+ G+  ++        + IE+         
Sbjct: 185 TAENAGNLAEGFMQTIARRYAGT-RLGRQELDGELVEERPGALWSRDRIEQCFEEN--PP 241

Query: 314 LYAPLIMGCDI---AGEGGDKTVVVF 336
             A +++  D    +G+  D   +V 
Sbjct: 242 PLARIVVAVDPPASSGKASDACGIVV 267


>gi|194445851|ref|YP_002040314.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Newport str.
           SL254]
 gi|194404514|gb|ACF64736.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Newport str.
           SL254]
          Length = 540

 Score = 78.1 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/356 (11%), Positives = 88/356 (24%), Gaps = 24/356 (6%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIKGKPLEHFSQPHRWQL 56
           P      +   + L  +  H E + + K F           WG+   P            
Sbjct: 12  PDYQMVFEWRMERLQRIRQHPEMLPALKQFYRTNPAQFIIDWGMTTDPRNIDYGLPVTIP 71

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
             +          +               R +G +     M   L      M I   +  
Sbjct: 72  FLLFPKQEEWIHWIMERWGKRENGITEKSREMGLSWTAIGMACSLCLFNKEMVIGFGSRK 131

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
           E  + ++     + +           ++         +A  +                  
Sbjct: 132 EEYV-DSTGDPKALFWKARKFVETLPVEFRGSWNEKKHAPYMRVEFP---------ETGA 181

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
             +                  DEA+     +        T        I  S+   +   
Sbjct: 182 VIKGEAGDNIGRGDRTTLYLVDEAAFLQRPLLIDAALSQTTRCR----IDLSSVNGMANP 237

Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
           F    +        +    R+    D  ++     +   +  V   E+   +        
Sbjct: 238 FAQKRHGGK--IPVFTFHWRSDPRKDDEWYRRECEKI-DNPVVVAQELDLNYSASAEGVL 294

Query: 297 IPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
           IP ++++ A+              +   D+A EG DK     R G ++E++ +WS 
Sbjct: 295 IPSDWVQAAVDAHIRLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSG 350


>gi|261213600|ref|ZP_05927881.1| phage DNA Packaging protein [Brucella abortus bv. 3 str. Tulya]
 gi|260915207|gb|EEX82068.1| phage DNA Packaging protein [Brucella abortus bv. 3 str. Tulya]
          Length = 426

 Score = 78.1 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/295 (12%), Positives = 74/295 (25%), Gaps = 39/295 (13%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTI--FKCA-ISAGRGIGKTTLNAWMMLWLISTRPG----- 107
            + + A D       +   P    ++   I  GRG GKT   A  +  +    P      
Sbjct: 17  RQILAAQDEWLIRARDAQLPPDGDWRVWLIMGGRGSGKTRAGAEWVSGMALGLPPFAGKP 76

Query: 108 -MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
              I  +  +    +  +    S  LS+         ++                     
Sbjct: 77  SGHIALVGETFNDAREMMVDGPSGILSVSRL-VRPRYEASRRRL---------------- 119

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFW 224
                     +    +           A + DE +    P      +       +  R  
Sbjct: 120 --IWDNGAVATLFSSEDPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQV 177

Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
           +    T                    +         +  GF + I  RY     + R E+
Sbjct: 178 V---TTTPRAVPLLKALLTDRTVSMTHMRTAENAGNLAEGFMQTIARRYAGT-RLGRQEL 233

Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVVVF 336
            G+  ++        + IE+           A +++  D    +G+  D   +V 
Sbjct: 234 DGELVEERPGALWSRDRIEQCFEEN--PPPLARIVVAVDPPASSGKASDACGIVV 286


>gi|192290494|ref|YP_001991099.1| hypothetical protein Rpal_2102 [Rhodopseudomonas palustris TIE-1]
 gi|192284243|gb|ACF00624.1| protein of unknown function DUF264 [Rhodopseudomonas palustris
           TIE-1]
          Length = 386

 Score = 78.1 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 71/264 (26%), Gaps = 35/264 (13%)

Query: 82  ISAGRGIGKTTLNAWMMLWLI------STRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
           +  GRG GKT   A  +  ++      +TRP   I  +  S    +  +    S  L + 
Sbjct: 1   MLGGRGAGKTRAGAEWVRAMVAGTPPYATRPHGRIALVGESWHDAREVMVEGESGLLRIT 60

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
           P R   E  +                                    D           A 
Sbjct: 61  PRRERPEWIASRRRLQ------------------WPNGAVGEVFSADDPDSLRGPQFEAA 102

Query: 196 FNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253
           + DE +     +     +          R   + + T R       +   P         
Sbjct: 103 WCDELAKWRYAEASFDMLQFGLRLGARPRQ--LITTTPRPLPLIKRLLADPHTR-VTRAP 159

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
                  +   F E +++RY       R E+ G+  +   +     + IE A  R A   
Sbjct: 160 TRANAAHLSPAFLETVVARYAGT-RQGRQELDGELIEDRPDALWSRDRIERA--RVAAAP 216

Query: 314 LYAPLIMGCDI---AGEGGDKTVV 334
               +++  D    +  G D   +
Sbjct: 217 PLVRIVVAIDPPGSSRPGADACGI 240


>gi|226940437|ref|YP_002795511.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
 gi|226715364|gb|ACO74502.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
          Length = 133

 Score = 77.7 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 54/143 (37%), Gaps = 11/143 (7%)

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           +  AN++TQL+     EV KW  +    HWF+ QS S+                 +K + 
Sbjct: 1   MITANTDTQLRTKTSPEVGKWQRLSITSHWFDPQSASIAARD----------KEHAKTWR 50

Query: 171 ITCRTYSEERPDTFVGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                +SE   + F G HN    + +  DEAS   D + +   G  T+      WI   N
Sbjct: 51  ADFVPWSEHNTEAFAGLHNKGKRIVLIFDEASAIADKVWEVAEGALTDEETEIIWIAFGN 110

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQ 252
             R  G F + F          Q
Sbjct: 111 PTRNIGRFRECFRRFRHSGWIIQ 133


>gi|260754354|ref|ZP_05866702.1| phage DNA Packaging protein [Brucella abortus bv. 6 str. 870]
 gi|260674462|gb|EEX61283.1| phage DNA Packaging protein [Brucella abortus bv. 6 str. 870]
          Length = 426

 Score = 77.7 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/295 (12%), Positives = 74/295 (25%), Gaps = 39/295 (13%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTI--FKCA-ISAGRGIGKTTLNAWMMLWLISTRPG----- 107
            + + A D       +   P    ++   I  GRG GKT   A  +  +    P      
Sbjct: 17  RQILAAQDEWLIRARDAQLPPDGDWRVWLIMGGRGSGKTRAGAEWVSGMALGLPPFAGKP 76

Query: 108 -MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
              I  +  +    +  +    S  LS+         ++                     
Sbjct: 77  SGHIALVGETFNDAREVMVDGPSGILSVSRL-VRPRYEASRRRL---------------- 119

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFW 224
                     +    +           A + DE +    P      +       +  R  
Sbjct: 120 --IWDNGAVATLFSSEDPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQV 177

Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
           +    T                    +         +  GF + I  RY     + R E+
Sbjct: 178 V---TTTPRAVPLLKALLTDRTVSMTHMRTAENAGNLAEGFMQTIARRYAGT-RLGRQEL 233

Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVVVF 336
            G+  ++        + IE+           A +++  D    +G+  D   +V 
Sbjct: 234 DGELVEERPGALWSRDRIEQCFEEN--PPPLARIVVAVDPPASSGKASDACGIVV 286


>gi|260545691|ref|ZP_05821432.1| ATP/GTP-binding site-containing protein A [Brucella abortus NCTC
           8038]
 gi|260757573|ref|ZP_05869921.1| phage DNA Packaging protein [Brucella abortus bv. 4 str. 292]
 gi|260761398|ref|ZP_05873741.1| phage DNA Packaging protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883379|ref|ZP_05894993.1| phage DNA Packaging protein [Brucella abortus bv. 9 str. C68]
 gi|260097098|gb|EEW80973.1| ATP/GTP-binding site-containing protein A [Brucella abortus NCTC
           8038]
 gi|260667891|gb|EEX54831.1| phage DNA Packaging protein [Brucella abortus bv. 4 str. 292]
 gi|260671830|gb|EEX58651.1| phage DNA Packaging protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|260872907|gb|EEX79976.1| phage DNA Packaging protein [Brucella abortus bv. 9 str. C68]
          Length = 426

 Score = 77.7 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/295 (12%), Positives = 74/295 (25%), Gaps = 39/295 (13%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTI--FKCA-ISAGRGIGKTTLNAWMMLWLISTRPG----- 107
            + + A D       +   P    ++   I  GRG GKT   A  +  +    P      
Sbjct: 17  RQILAAQDEWLIRARDAQLPPDGDWRVWLIMGGRGSGKTRAGAEWVSGMALGLPPFAGKP 76

Query: 108 -MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
              I  +  +    +  +    S  LS+         ++                     
Sbjct: 77  SGHIALVGETFNDAREVMVDGPSGILSVSRL-VRPRYEASRRRL---------------- 119

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFW 224
                     +    +           A + DE +    P      +       +  R  
Sbjct: 120 --IWDNGAVATLFSSEDPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQV 177

Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
           +    T                    +         +  GF + I  RY     + R E+
Sbjct: 178 V---TTTPRAVPLLKALLTDRTVSMTHMRTAENAGNLAEGFMQTIARRYAGT-RLGRQEL 233

Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVVVF 336
            G+  ++        + IE+           A +++  D    +G+  D   +V 
Sbjct: 234 DGELVEERPGALWSRDRIEQCFEEN--PPPLARIVVAVDPPASSGKASDACGIVV 286


>gi|306838714|ref|ZP_07471549.1| Phage DNA packaging protein [Brucella sp. NF 2653]
 gi|306406201|gb|EFM62445.1| Phage DNA packaging protein [Brucella sp. NF 2653]
          Length = 430

 Score = 77.7 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 78/295 (26%), Gaps = 39/295 (13%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTI--FKCA-ISAGRGIGKTTLNAWMMLWLISTRPG----- 107
            + + A D       +   P    ++   I  GRG GKT   A  +  +    P      
Sbjct: 17  RQILAAQDEWLIRARDAQLPPDGDWRVWLIMGGRGSGKTRAGAEWVSGMALGLPPFAGKP 76

Query: 108 -MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
              I  +  +    +  +    S  LS+         ++                     
Sbjct: 77  SGHIALVGETFNDAREVMVDGPSGILSVSRL-VRPRYEASRRRL---------------- 119

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFW 224
                     +    +           A + DE +    P      +       +  R  
Sbjct: 120 --IWDNGAVATLFSSEDPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPR-Q 176

Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
           ++T+  R +                 +         +  GF + I  RY     + R E+
Sbjct: 177 VVTTTPRAV--PLLKALLTDRTVSMTHMRTVENAGNLAEGFMQTIARRYAGT-RLGRQEL 233

Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVVVF 336
            G+  ++        + IE+           A +++  D    +G+  D   +V 
Sbjct: 234 DGELVEERPGALWSRDRIEQCFEEN--PPPLARIVVAVDPPASSGKASDACGIVV 286


>gi|167993618|ref|ZP_02574712.1| gp33 TerL [Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
           str. CVM23701]
 gi|205328294|gb|EDZ15058.1| gp33 TerL [Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
           str. CVM23701]
          Length = 539

 Score = 77.7 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/356 (11%), Positives = 88/356 (24%), Gaps = 24/356 (6%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIKGKPLEHFSQPHRWQL 56
           P      +   + L  +  H E + + K F           WG+   P            
Sbjct: 12  PDYQMVFEWRMERLQRIRQHPEMLPALKQFYRTNPAQFIIDWGMTTDPRNIDYGLPVTIP 71

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
             +          +               R +G +     M   L      M I   +  
Sbjct: 72  FLLFPKQEEWIHWIMERWGKRENGITEKSREMGLSWTAIGMACSLCLFNKEMVIGFGSRK 131

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
           E  + ++     + +           ++         +A  +                  
Sbjct: 132 EEYV-DSTGDPKALFWKARKFVETLPVEFRGSWNEKKHAPYMRVEFP---------ETGA 181

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
             +                  DEA+     +        T        I  S+   +   
Sbjct: 182 VIKGEAGDNIGRGDRTTLYLVDEAAFLQRPLLIDAALSQTTRCR----IDLSSVNGMANP 237

Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
           F    +        +    R+    D  ++     +   +  V   E+   +        
Sbjct: 238 FAQKRHGGK--IPVFTFHWRSDPRKDDEWYRRECEKI-DNPVVVAQELDLNYSASAEGVL 294

Query: 297 IPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
           IP ++++ A+              +   D+A EG DK     R G ++E++ +WS 
Sbjct: 295 IPSDWVQAAVDAHIRLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSG 350


>gi|161618560|ref|YP_001592447.1| hypothetical protein BCAN_A0599 [Brucella canis ATCC 23365]
 gi|225852113|ref|YP_002732346.1| hypothetical protein BMEA_A0624 [Brucella melitensis ATCC 23457]
 gi|254701380|ref|ZP_05163208.1| Phage DNA packaging protein [Brucella suis bv. 5 str. 513]
 gi|254703925|ref|ZP_05165753.1| Phage DNA packaging protein [Brucella suis bv. 3 str. 686]
 gi|254713724|ref|ZP_05175535.1| Phage DNA packaging protein [Brucella ceti M644/93/1]
 gi|254717218|ref|ZP_05179029.1| Phage DNA packaging protein [Brucella ceti M13/05/1]
 gi|256044294|ref|ZP_05447198.1| Phage DNA packaging protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|256060717|ref|ZP_05450881.1| Phage DNA packaging protein [Brucella neotomae 5K33]
 gi|256113127|ref|ZP_05454004.1| Phage DNA packaging protein [Brucella melitensis bv. 3 str. Ether]
 gi|256159312|ref|ZP_05457102.1| Phage DNA packaging protein [Brucella ceti M490/95/1]
 gi|256254617|ref|ZP_05460153.1| Phage DNA packaging protein [Brucella ceti B1/94]
 gi|161335371|gb|ABX61676.1| protein of unknown function DUF264 [Brucella canis ATCC 23365]
 gi|225640478|gb|ACO00392.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
 gi|326408609|gb|ADZ65674.1| Phage DNA packaging protein [Brucella melitensis M28]
 gi|326538330|gb|ADZ86545.1| conserved hypothetical protein [Brucella melitensis M5-90]
          Length = 411

 Score = 77.7 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/266 (12%), Positives = 66/266 (24%), Gaps = 36/266 (13%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSML 135
           I  GRG GKT   A  +  +    P         I  +  +    +  +    S  LS+ 
Sbjct: 27  IMGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVS 86

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
                   ++                               +    +           A 
Sbjct: 87  RL-VRPRYEASRRRL------------------IWDNGAVATLFSSEDPDSLRGPQFDAA 127

Query: 196 FNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253
           + DE +    P      +       +  R  +    T                    +  
Sbjct: 128 WCDELAKWKNPQETWDMLQFGLRLGDNPRQVV---TTTPRAVPLLKALLTDRTVSMTHMR 184

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
                  +  GF + I  RY     + R E+ G+  ++        + IE+         
Sbjct: 185 TAENAGNLAEGFMQTIARRYAGT-RLGRQELDGELVEERPGALWSRDRIEQCFEEN--PP 241

Query: 314 LYAPLIMGCDI---AGEGGDKTVVVF 336
             A +++  D    +G+  D   +V 
Sbjct: 242 PLARIVVAVDPPASSGKASDACGIVV 267


>gi|331650684|ref|ZP_08351739.1| conserved hypothetical protein [Escherichia coli M605]
 gi|331040472|gb|EGI12647.1| conserved hypothetical protein [Escherichia coli M605]
          Length = 414

 Score = 77.7 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 68/267 (25%), Gaps = 19/267 (7%)

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
           R +G +     +   L      M I   +  E  + ++     + +           ++ 
Sbjct: 47  REMGLSWTAIGLACSLCLFNKEMVIGFGSRKEEYV-DSTGDPKALFWKARKFVETLPVEF 105

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
                   +A  +                    +                  DEA+    
Sbjct: 106 RGSWSEKKHAPYMRVEFP---------ETGAVIKGEAGDNIGRGDRTTLYLVDEAAFLQR 156

Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265
            +        T        I  S+   +   F    +        +    R     D  +
Sbjct: 157 PLLIDAALSQTTRCR----IDLSSVNGMANPFAQKRHGGK--IPVFTFHWRDDPRKDEEW 210

Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCD 323
           +     +   +  V   E+   +        IP  +++  +              +   D
Sbjct: 211 YRRECEKI-DNPVVVAQELDLNYSASAEGVLIPSEWVQATVDAHIKLGIQPTGKRLGAMD 269

Query: 324 IAGEGGDKTVVVFRRGNIIEHIFDWSA 350
           +A EG DK     R G ++E++ +WS 
Sbjct: 270 VADEGRDKNAFSTRHGFLLENVREWSG 296


>gi|265983712|ref|ZP_06096447.1| terminase large subunit [Brucella sp. 83/13]
 gi|264662304|gb|EEZ32565.1| terminase large subunit [Brucella sp. 83/13]
          Length = 384

 Score = 77.7 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 69/265 (26%), Gaps = 36/265 (13%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSMLP 136
             GRG GKT   A  +  +    P         I  +  +    +  +    S  LS+  
Sbjct: 1   MGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVSR 60

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
                  ++                               +    +           A +
Sbjct: 61  L-VRPRYEASRRRL------------------IWDNGAVATLFSSEDPDSLRGPQFDAAW 101

Query: 197 NDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254
            DE +    P      +       +  R  ++T+  R +                 +   
Sbjct: 102 CDELAKWKNPQETWDMLQFGLRLGDNPR-QVVTTTPRAV--PLLKALLTDRTVSMTHMRT 158

Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314
                 +  GF + I  RY     + R E+ G+  ++        + IE+          
Sbjct: 159 VENAGNLAEGFMQTIARRYAGT-RLGRQELDGELVEERPGALWSRDRIEQCFEEN--PPP 215

Query: 315 YAPLIMGCDI---AGEGGDKTVVVF 336
            A +++  D    +G+  D   +V 
Sbjct: 216 LARIVVAVDPPASSGKASDACGIVV 240


>gi|126739361|ref|ZP_01755054.1| terminase, large subunit, putative [Roseobacter sp. SK209-2-6]
 gi|126719461|gb|EBA16170.1| terminase, large subunit, putative [Roseobacter sp. SK209-2-6]
          Length = 433

 Score = 77.7 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 70/291 (24%), Gaps = 35/291 (12%)

Query: 81  AISAGRGIGKTTLNAWMML------WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
            I  GRG GKT   A  +         +ST P   +  +  +  Q+++ +    S  L+ 
Sbjct: 40  VILGGRGAGKTRAGAEWVRCQIEGATPLSTGPSRRLALVGETYDQVRDVMIQGDSGILAC 99

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
            P     + ++                                                 
Sbjct: 100 SPKDRRPQWKAGERKL------------------LWANGAQAQAFSAHDPEALRGPQFDL 141

Query: 195 VFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
            + DE +           +          R  I    T   N              + + 
Sbjct: 142 AWLDELAKWKRGREAWDMLQFALRLGKDPRACI---TTTPRNSQILRDVLAQSSTVQTHA 198

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
                   +   F E +  RY     + R E+ G                E A  +    
Sbjct: 199 PTDANRANLAPSFLEEMKQRYAGT-RLGRQELEGCLLSDVEGALWSSA--ELAGQQCKEA 255

Query: 313 DLYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360
                +++  D    AG+  D   ++           +W   ++ +   +G
Sbjct: 256 PELDRIVVAVDPAVSAGKASDACGILVAGARHAGTPSEWETYVLADRTVQG 306


>gi|82699481|ref|YP_414055.1| ATP/GTP-binding domain-containing protein [Brucella melitensis
           biovar Abortus 2308]
 gi|189023809|ref|YP_001934577.1| ATP/GTP-binding site motif A (P-loop) [Brucella abortus S19]
 gi|82615582|emb|CAJ10565.1| ATP/GTP-binding site motif A (P-loop) [Brucella melitensis biovar
           Abortus 2308]
 gi|189019381|gb|ACD72103.1| ATP/GTP-binding site motif A (P-loop) [Brucella abortus S19]
          Length = 380

 Score = 77.7 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 69/265 (26%), Gaps = 36/265 (13%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSMLP 136
             GRG GKT   A  +  +    P         I  +  +    +  +    S  LS+  
Sbjct: 1   MGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVSR 60

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
                  ++                               +    +           A +
Sbjct: 61  L-VRPRYEASRRRL------------------IWDNGAVATLFSSEDPDSLRGPQFDAAW 101

Query: 197 NDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254
            DE +    P      +       +  R  ++T+  R +                 +   
Sbjct: 102 CDELAKWKNPQETWDMLQFGLRLGDNPR-QVVTTTPRAV--PLLKALLTDRTVSMTHMRT 158

Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314
                 +  GF + I  RY     + R E+ G+  ++        + IE+          
Sbjct: 159 AENAGNLAEGFMQTIARRYAGT-RLGRQELDGELVEERPGALWSRDRIEQCFEEN--PPP 215

Query: 315 YAPLIMGCDI---AGEGGDKTVVVF 336
            A +++  D    +G+  D   +V 
Sbjct: 216 LARIVVAVDPPASSGKASDACGIVV 240


>gi|254693351|ref|ZP_05155179.1| Phage DNA packaging protein [Brucella abortus bv. 3 str. Tulya]
          Length = 407

 Score = 77.7 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/266 (12%), Positives = 66/266 (24%), Gaps = 36/266 (13%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSML 135
           I  GRG GKT   A  +  +    P         I  +  +    +  +    S  LS+ 
Sbjct: 27  IMGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREMMVDGPSGILSVS 86

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
                   ++                               +    +           A 
Sbjct: 87  RL-VRPRYEASRRRL------------------IWDNGAVATLFSSEDPDSLRGPQFDAA 127

Query: 196 FNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253
           + DE +    P      +       +  R  +    T                    +  
Sbjct: 128 WCDELAKWKNPQETWDMLQFGLRLGDNPRQVV---TTTPRAVPLLKALLTDRTVSMTHMR 184

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
                  +  GF + I  RY     + R E+ G+  ++        + IE+         
Sbjct: 185 TAENAGNLAEGFMQTIARRYAGT-RLGRQELDGELVEERPGALWSRDRIEQCFEEN--PP 241

Query: 314 LYAPLIMGCDI---AGEGGDKTVVVF 336
             A +++  D    +G+  D   +V 
Sbjct: 242 PLARIVVAVDPPASSGKASDACGIVV 267


>gi|149185407|ref|ZP_01863723.1| hypothetical protein ED21_20319 [Erythrobacter sp. SD-21]
 gi|148830627|gb|EDL49062.1| hypothetical protein ED21_20319 [Erythrobacter sp. SD-21]
          Length = 444

 Score = 77.7 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 81/303 (26%), Gaps = 39/303 (12%)

Query: 43  KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102
              E    P+ W+ +           +            + AGRG GKT   A  +L   
Sbjct: 27  TAEERAEWPYHWRRQA--------RESQRAPEGDWQTWLVMAGRGFGKTRAGAEWVLETA 78

Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
              P   I  +  S  +++  +    S  L+  P                W A   + S+
Sbjct: 79  EADPFARIALVGASLGEVRAVMVEGESGILACSP---------------PWRAPDYQPSL 123

Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII------NKSILGFFT 216
                 +                          + DE +   +          ++L    
Sbjct: 124 RT---VHFPNGAQAFLYSAAESESLRGPQHSHAWCDEVAKWSNSHERASRSWDNLLLGLR 180

Query: 217 ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR--TVEGIDSGFHEGIISRYG 274
                R       T R       + +                    + + F   + + +G
Sbjct: 181 LGKDQRIMAT--TTPRSVPLLRRLLDAERTHGLVLTGGATRDNAANLPTKFLAAMDAEFG 238

Query: 275 LDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD-IAGEGGDKTV 333
            +S +   E+ G   ++          +E+     A DD    +++G D  A   GD+  
Sbjct: 239 -NSALGLQELDGLLLEEIEGALWSRALLEQRRGACAEDD-LRRVVVGVDPPASAHGDECG 296

Query: 334 VVF 336
           +V 
Sbjct: 297 IVV 299


>gi|254437946|ref|ZP_05051440.1| conserved hypothetical protein [Octadecabacter antarcticus 307]
 gi|198253392|gb|EDY77706.1| conserved hypothetical protein [Octadecabacter antarcticus 307]
          Length = 441

 Score = 77.7 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/319 (11%), Positives = 77/319 (24%), Gaps = 36/319 (11%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAI-SAGRGIGKTTLNAWMMLWLISTRPG------ 107
           QL+ +  +      +   +    ++  +   GRG GKT   A  +  ++           
Sbjct: 21  QLKALPYLFEFWALDHQLAPEGDWRTWVILGGRGAGKTRAGAEWVRSMVEGSRPRDPGIA 80

Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
             +  I  +  Q +  +    S  L+  P     +  S                      
Sbjct: 81  KHVGLIGETMEQAREVMVFGTSGILACSPPDRRPQWISGRNLL----------------- 123

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWI 225
                                     AV+ DE +  P        +          R  +
Sbjct: 124 -IWPNGAEARLYSAFDPERLRGPQFDAVWADELAKWPKAQSTWDMMQFGLRLGANPRACV 182

Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
            T   + +       F         +         +   F + +  RY     + R E+ 
Sbjct: 183 TT-TPKNVE--ILKDFMARKSTVHTHATTQANRAYLADSFLQEVQERYCGT-RLGRQELD 238

Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVVVFRRGNII 342
           G               +E              +++  D    A    D   +V       
Sbjct: 239 GVLLADVDGALWSSARLEAGHVT--KLPQMDRIVVAVDPPAGANATSDACGIVVAGIVSQ 296

Query: 343 EHIFDWSAKLIQETNQEGC 361
             +  W   +I++ + +G 
Sbjct: 297 GPVSGWKIYVIEDASVQGV 315


>gi|183598507|ref|ZP_02960000.1| hypothetical protein PROSTU_01901 [Providencia stuartii ATCC 25827]
 gi|188020684|gb|EDU58724.1| hypothetical protein PROSTU_01901 [Providencia stuartii ATCC 25827]
          Length = 411

 Score = 77.7 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 78/285 (27%), Gaps = 28/285 (9%)

Query: 69  NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL----ISTRPGMSIICIANSETQLKNTL 124
            V  +    ++ A   GRG  KT   A M                I+C       L+ + 
Sbjct: 14  PVFENEGVRYRGAY-GGRGSAKTRTFALMTAIRGYMAAKNGQSGVILCAREYMNSLEESS 72

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
             EV + +  +P                W  +  E                ++  R +  
Sbjct: 73  MEEVKQAIRSVP----------------WLNDFYELGEKYIRTKCRSVSYVFAGLRHNLD 116

Query: 185 VGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244
                   +  + DEA    +     +     E      W+   N  +        F   
Sbjct: 117 SIKSKARILIAWVDEAESVSETAWTKLTPTVREAGSE-IWVTW-NPEKDGSATDKRFRKK 174

Query: 245 L-EDWKRYQIDTRTVEGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYI 302
             ++    +++        S   E  ++     D+        G + +      + + Y+
Sbjct: 175 QPDNAIVVEMNYDDNPWFPSVLEEERLNDQARLDAATYAWIWEGAYLENSDKQVLANKYV 234

Query: 303 EEAMSREAIDDLYAPLIMGCDIAGEGGD-KTVVVFRRGNIIEHIF 346
            ++   + +      L+ G D  G   D  T++     +   +I 
Sbjct: 235 VQSF-PDDLWKKADRLLFGADF-GFAKDLNTLIRMFILDDCLYIE 277


>gi|114319955|ref|YP_741638.1| hypothetical protein Mlg_0794 [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226349|gb|ABI56148.1| hypothetical protein Mlg_0794 [Alkalilimnicola ehrlichii MLHE-1]
          Length = 509

 Score = 77.7 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/294 (11%), Positives = 72/294 (24%), Gaps = 30/294 (10%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
           A+      +         +    AGR   KT   A + ++L +          A  +  L
Sbjct: 44  ALFKRLSGDREPPQRQARELWAIAGRRSDKTHTAAGIAVYLAT--------IGAELDGTL 95

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
                 E      +   R   ++    +      + ++   +  ++    +     S E 
Sbjct: 96  ARLTAGERGVVQLLAVDRQQAKVALGYVRGLFADSPVMSSLVEKENTEGVLLRNGVSIEV 155

Query: 181 PDTFVG-PHNTHGMAVFNDEASGTPD--------IINKSILGFFTELNPNRFWIMTSNTR 231
                        +A   DE +   D         + ++++            +  S+  
Sbjct: 156 ATNSHRAVRGRTLLAAILDECAFFKDEATATPDVEVYRALVPSLATTGG--MLVGISSPY 213

Query: 232 RLNGWFYDIFN----IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
              G  Y  +      P +              +D             D + A+ E  GQ
Sbjct: 214 ARRGLLYSKWRKHYGKPGDVLVVQGGTLDFNPTLDPRVIAEAE---QDDPEAAKAEWHGQ 270

Query: 288 FPQQEVNNFIPHNYIEEAM---SREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
           F       F+    ++        E             D +G   D   +    
Sbjct: 271 FRADVEG-FVTREAVDACTAPGRIELPPVAGERYTAFVDPSGGSKDAFTLAIAH 323


>gi|114319804|ref|YP_741487.1| hypothetical protein Mlg_0643 [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226198|gb|ABI55997.1| hypothetical protein Mlg_0643 [Alkalilimnicola ehrlichii MLHE-1]
          Length = 509

 Score = 77.7 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/294 (11%), Positives = 72/294 (24%), Gaps = 30/294 (10%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
           A+      +         +    AGR   KT   A + ++L +          A  +  L
Sbjct: 44  ALFKRLSGDREPPQRQARELWAIAGRRSDKTHTAAGIAVYLAT--------IGAELDGTL 95

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
                 E      +   R   ++    +      + ++   +  ++    +     S E 
Sbjct: 96  ARLTAGERGVVQLLAVDRQQAKVALGYVRGLFADSPVMSSLVEKENTEGVLLRNGVSIEV 155

Query: 181 PDTFVG-PHNTHGMAVFNDEASGTPD--------IINKSILGFFTELNPNRFWIMTSNTR 231
                        +A   DE +   D         + ++++            +  S+  
Sbjct: 156 ATNSHRAVRGRTLLAAILDECAFFKDEATATPDVEVYRALVPSLATTGG--MLVGISSPY 213

Query: 232 RLNGWFYDIFN----IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
              G  Y  +      P +              +D             D + A+ E  GQ
Sbjct: 214 ARRGLLYSKWRKHYGKPGDVLVVQGGTLDFNPTLDPRVIAEAE---QDDPEAAKAEWHGQ 270

Query: 288 FPQQEVNNFIPHNYIEEAM---SREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
           F       F+    ++        E             D +G   D   +    
Sbjct: 271 FRADVEG-FVTREAVDACTVPARIELPPVAGERYTAFVDPSGGSKDAFTLAIAH 323


>gi|237815048|ref|ZP_04594046.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
 gi|254697001|ref|ZP_05158829.1| Phage DNA packaging protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|254729902|ref|ZP_05188480.1| Phage DNA packaging protein [Brucella abortus bv. 4 str. 292]
 gi|256257118|ref|ZP_05462654.1| Phage DNA packaging protein [Brucella abortus bv. 9 str. C68]
 gi|237789885|gb|EEP64095.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
          Length = 407

 Score = 77.7 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/266 (12%), Positives = 66/266 (24%), Gaps = 36/266 (13%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSML 135
           I  GRG GKT   A  +  +    P         I  +  +    +  +    S  LS+ 
Sbjct: 27  IMGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVS 86

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
                   ++                               +    +           A 
Sbjct: 87  RL-VRPRYEASRRRL------------------IWDNGAVATLFSSEDPDSLRGPQFDAA 127

Query: 196 FNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253
           + DE +    P      +       +  R  +    T                    +  
Sbjct: 128 WCDELAKWKNPQETWDMLQFGLRLGDNPRQVV---TTTPRAVPLLKALLTDRTVSMTHMR 184

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
                  +  GF + I  RY     + R E+ G+  ++        + IE+         
Sbjct: 185 TAENAGNLAEGFMQTIARRYAGT-RLGRQELDGELVEERPGALWSRDRIEQCFEEN--PP 241

Query: 314 LYAPLIMGCDI---AGEGGDKTVVVF 336
             A +++  D    +G+  D   +V 
Sbjct: 242 PLARIVVAVDPPASSGKASDACGIVV 267


>gi|273810556|ref|YP_003344937.1| gp2 [Sodalis phage SO-1]
 gi|258619841|gb|ACV84094.1| gp2 [Sodalis phage SO-1]
          Length = 461

 Score = 77.7 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 84/298 (28%), Gaps = 30/298 (10%)

Query: 44  PLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS 103
           P         +Q + +                      + +G G GK+ + A  ++ L++
Sbjct: 24  PTRVAQAVRLYQPDCLPHQVELLRDTKTKILG------LCSGFGGGKSWVAARKVIQLLT 77

Query: 104 TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
             PG   I    +   L   ++ E+ K       R  F  Q   ++      +       
Sbjct: 78  LNPGHDGIVTEPTIPLLVKIMYPELEKAFDEAGFRWKFNKQ-DKIYSVLVKGKWTRV--- 133

Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
                          E  + +      +   +  DE   T   +  +            F
Sbjct: 134 -------------ICESMENYTRLIGVNAAWIVADEFDTTKQDVALAAYHKLLGRLRAGF 180

Query: 224 --WIMTSNTRRLNGWFYDIFNIPLE-DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280
               +  +T       Y IF +  +   +  +  T     + + F + + S+Y   +++ 
Sbjct: 181 VRQFVIVSTPEGYRAMYQIFEVEKDSQKRLIRAKTTDNHHLPADFIDTLRSQY--PANLI 238

Query: 281 RIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
              + G F              EE  S E        LI+G D         VV  RR
Sbjct: 239 DAYLNGLFVNLTSGAVYKMFNREENASTE-EVQPEDTLIIGMDFNVT-KMAAVVYVRR 294


>gi|282857748|ref|ZP_06266957.1| DNA maturase B [Pyramidobacter piscolens W5455]
 gi|282584418|gb|EFB89777.1| DNA maturase B [Pyramidobacter piscolens W5455]
          Length = 591

 Score = 77.3 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/373 (10%), Positives = 86/373 (23%), Gaps = 83/373 (22%)

Query: 27  SFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR 86
            F+ F+     W     P     +P   Q      +  +  +          +  I A R
Sbjct: 14  DFRAFLYVV--WKHLNLP-----EPTPLQ----YDIANYLQTGPK-------RKIIEAFR 55

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQL---KNTLWAEVSKWLSMLPHRHWFEM 143
           G+GK+ + +   LW +   P ++I+ ++ S+ +           + +   + P +  F  
Sbjct: 56  GVGKSWITSAYALWRLYWNPQLNILVVSASKERADSFSTFTLRLIDEMGILSPLKPDFNK 115

Query: 144 QSLSLHPSGWYAELLEQSM---------GIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
              +   +                    G  +            E  +          ++
Sbjct: 116 GQRNSKIAFDVGPARASHAPSVKSVGIYGQLTGSRADVIIADDIEISNNSYTQMMRDKLS 175

Query: 195 VFNDEASGT--------------PDIINKSILGFFTELNPNRFWIM-TSNTRRLNGWFYD 239
               E                  P +               R W     +  +  G+   
Sbjct: 176 EAVKEFDAILKPADDAEITYLGTPQVEMSLYNALRDRGYSTRIWPARVPSAEKRIGYGDR 235

Query: 240 IFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG------QFPQQEV 293
           +     +     +                  + YG      +  +        +FP +  
Sbjct: 236 LAPYVAKMEDVGRTT--DPARFSDNDLREREASYGRSGFALQFMLDTTLSDAERFPLRLN 293

Query: 294 NNFI------------------------------PHNYIEEAMSREAIDDLYAPLIMGCD 323
           +  I                                +     M  +     Y   +M  D
Sbjct: 294 DLIILPLDKDMAPEKVVWSSGPELLIKDLASTGFAGDSFHRPMGIQGEFREYTGSVMFVD 353

Query: 324 IAGEGGDKTVVVF 336
            +G G D+T    
Sbjct: 354 PSGRGMDETAYAV 366


>gi|254688870|ref|ZP_05152124.1| Phage DNA packaging protein [Brucella abortus bv. 6 str. 870]
          Length = 407

 Score = 77.3 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/266 (12%), Positives = 66/266 (24%), Gaps = 36/266 (13%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSML 135
           I  GRG GKT   A  +  +    P         I  +  +    +  +    S  LS+ 
Sbjct: 27  IMGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVS 86

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
                   ++                               +    +           A 
Sbjct: 87  RL-VRPRYEASRRRL------------------IWDNGAVATLFSSEDPDSLRGPQFDAA 127

Query: 196 FNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253
           + DE +    P      +       +  R  +    T                    +  
Sbjct: 128 WCDELAKWKNPQETWDMLQFGLRLGDNPRQVV---TTTPRAVPLLKALLTDRTVSMTHMR 184

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
                  +  GF + I  RY     + R E+ G+  ++        + IE+         
Sbjct: 185 TAENAGNLAEGFMQTIARRYAGT-RLGRQELDGELVEERPGALWSRDRIEQCFEEN--PP 241

Query: 314 LYAPLIMGCDI---AGEGGDKTVVVF 336
             A +++  D    +G+  D   +V 
Sbjct: 242 PLARIVVAVDPPASSGKASDACGIVV 267


>gi|261757806|ref|ZP_06001515.1| ATP/GTP-binding site domain-containing protein A [Brucella sp.
           F5/99]
 gi|261737790|gb|EEY25786.1| ATP/GTP-binding site domain-containing protein A [Brucella sp.
           F5/99]
          Length = 430

 Score = 77.3 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/295 (12%), Positives = 78/295 (26%), Gaps = 39/295 (13%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTI--FKCA-ISAGRGIGKTTLNAWMMLWLISTRPG----- 107
            + + A D       +   P    ++   I  GRG GKT   A  +  +    P      
Sbjct: 17  RQILAAQDEWLIRARDAQLPPDGDWRVWLIMGGRGSGKTRAGAEWVSGMALGLPPFAGKP 76

Query: 108 -MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
              I  +  +    +  +    S  LS+         ++                     
Sbjct: 77  SGHIALVGETFNDAREVMVDGPSGILSVSRL-VRPRYEASRRRL---------------- 119

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFW 224
                     +    +           A + DE +    P      +       +  R  
Sbjct: 120 --IWDNGAVATLFSSEDPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPR-Q 176

Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
           ++T+  R +                 +         +  GF + I  RY     + R ++
Sbjct: 177 VVTTTPRAV--PLLKALLTDRTVSMTHMRTAENAGNLAEGFMQTIARRYAGT-RLGRQKL 233

Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVVVF 336
            G+  ++        + IE+           A +++  D    +G+  D   +V 
Sbjct: 234 DGELVEERPGALWSRDRIEQCFEEN--PPPLARIVVAVDPPASSGKASDACGIVV 286


>gi|254718736|ref|ZP_05180547.1| Phage DNA packaging protein [Brucella sp. 83/13]
          Length = 411

 Score = 77.3 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 70/266 (26%), Gaps = 36/266 (13%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSML 135
           I  GRG GKT   A  +  +    P         I  +  +    +  +    S  LS+ 
Sbjct: 27  IMGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVS 86

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
                   ++                               +    +           A 
Sbjct: 87  RL-VRPRYEASRRRL------------------IWDNGAVATLFSSEDPDSLRGPQFDAA 127

Query: 196 FNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253
           + DE +    P      +       +  R  ++T+  R +                 +  
Sbjct: 128 WCDELAKWKNPQETWDMLQFGLRLGDNPR-QVVTTTPRAV--PLLKALLTDRTVSMTHMR 184

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
                  +  GF + I  RY     + R E+ G+  ++        + IE+         
Sbjct: 185 TVENAGNLAEGFMQTIARRYAGT-RLGRQELDGELVEERPGALWSRDRIEQCFEEN--PP 241

Query: 314 LYAPLIMGCDI---AGEGGDKTVVVF 336
             A +++  D    +G+  D   +V 
Sbjct: 242 PLARIVVAVDPPASSGKASDACGIVV 267


>gi|238027682|ref|YP_002911913.1| gp2 [Burkholderia glumae BGR1]
 gi|237876876|gb|ACR29209.1| gp2 [Burkholderia glumae BGR1]
          Length = 489

 Score = 77.3 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/290 (13%), Positives = 75/290 (25%), Gaps = 40/290 (13%)

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126
                   P   K  +  GRG  KT     ++    ST+    I+C+   +  ++ +  A
Sbjct: 60  QKLERLIYPKRLKI-VWGGRGSAKTRTIVSILTAQASTQRE-RILCLREVQNSIEESSHA 117

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
           E+++ +        F +    +                     T +  ++     +    
Sbjct: 118 ELAEEIERRDLGGSFVVGRKVIRV-----------------PATRSSFSFRGLYRNVTGV 160

Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL- 245
                    + DEA          +L    E       I++ N  R N   +     P  
Sbjct: 161 KGFAKATKAWVDEAENVSRESWDVLLPTIREPGSEI--IVSFNPNRENDPTWADLVGPYV 218

Query: 246 -----------EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294
                       D    + +                     D D  R   LG+F ++   
Sbjct: 219 DRLDEDGCYEDADTLIIRANYTDNPWFTEELELERAKMERTDLDRYRWIWLGKFNRRSDE 278

Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVV--VFRRGNII 342
                 +       +           G D  G   D T +   + RGN +
Sbjct: 279 LIFAGKW----RVEDIEAPPNTRFFFGAD-WGFAVDPTTLNRCWVRGNDL 323


>gi|254707699|ref|ZP_05169527.1| Phage DNA packaging protein [Brucella pinnipedialis M163/99/10]
          Length = 321

 Score = 77.3 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/266 (12%), Positives = 66/266 (24%), Gaps = 36/266 (13%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSML 135
           I  GRG GKT   A  +  +    P         I  +  +    +  +    S  LS+ 
Sbjct: 27  IMGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVS 86

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
                   ++                               +    +           A 
Sbjct: 87  RL-VRPRYEASRRRL------------------IWDNGAVATLFSSEDPDSLRGPQFDAA 127

Query: 196 FNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253
           + DE +    P      +       +  R  +    T                    +  
Sbjct: 128 WCDELAKWKNPQETWDMLQFGLRLGDNPRQVV---TTTPRAVPLLKALLTDRTVSMTHMR 184

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
                  +  GF + I  RY     + R E+ G+  ++        + IE+         
Sbjct: 185 TAENAGNLAEGFMQTIARRYAGT-RLGRQELDGELVEERPGALWSRDRIEQCFEEN--PP 241

Query: 314 LYAPLIMGCDI---AGEGGDKTVVVF 336
             A +++  D    +G+  D   +V 
Sbjct: 242 PLARIVVAVDPPASSGKASDACGIVV 267


>gi|114766464|ref|ZP_01445429.1| terminase, large subunit, putative [Pelagibaca bermudensis
           HTCC2601]
 gi|114541321|gb|EAU44370.1| terminase, large subunit, putative [Roseovarius sp. HTCC2601]
          Length = 434

 Score = 77.3 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/296 (13%), Positives = 82/296 (27%), Gaps = 35/296 (11%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134
            I  GRG GKT   A  +   +             +  +  +  Q++  +    S  L+ 
Sbjct: 40  VIMGGRGAGKTRAGAEWVRTCVEGALPLSPGRCRRVALVGETLDQVREVMVFGESGILAC 99

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
            P     +  +                                        G       A
Sbjct: 100 SPPDRRPDWHAGRRCL------------------VWPNGAEAMVFSAHDPEGLRGPQFDA 141

Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
            + DE +           +          +  +    T R  G   ++  +       + 
Sbjct: 142 AWVDELAKWKKARETWDMLQFALRLGERPQVCVT--TTPRNVGVLKELLELDST-VVTHA 198

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
                   + + F   + +RYG ++ +AR E+ G               +E A   E   
Sbjct: 199 KTEANRANLAASFLREVRARYG-NTRLARQELDGVLVTDVDGTLWTQAVLERARGAEM-P 256

Query: 313 DLYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG-CPVG 364
           + +  +++  D     G+G D   ++            W A ++++ + +G  P G
Sbjct: 257 ERFDRIVVAVDPPAGEGQGADACGILVAGAVCAGPPQAWRAWVLEDASVQGASPTG 312


>gi|188025504|ref|ZP_02997527.1| hypothetical protein PROSTU_00661 [Providencia stuartii ATCC 25827]
 gi|188023287|gb|EDU61327.1| hypothetical protein PROSTU_00661 [Providencia stuartii ATCC 25827]
          Length = 285

 Score = 77.3 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 78/285 (27%), Gaps = 28/285 (9%)

Query: 69  NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL----ISTRPGMSIICIANSETQLKNTL 124
            V  +    ++ A   GRG  KT   A M                I+C       L+ + 
Sbjct: 14  PVFENEGVRYRGAY-GGRGSAKTRTFALMTAIRGYMAAKNGQSGVILCAREYMNSLEESS 72

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
             EV + +  +P                W  +  E                ++  R +  
Sbjct: 73  MEEVKQAIRSVP----------------WLNDFYELGEKYIRTKCRSVSYVFAGLRHNLD 116

Query: 185 VGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244
                   +  + DEA    +     +     E      W+   N  +        F   
Sbjct: 117 SIKSKARILIAWVDEAESVSETAWTKLTPTVREAGSE-IWVTW-NPEKDGSATDKRFRKK 174

Query: 245 L-EDWKRYQIDTRTVEGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYI 302
             ++    +++        S   E  ++     D+        G + +      + + Y+
Sbjct: 175 QPDNAIVVEMNYDDNPWFPSVLEEERLNDQARLDAATYAWIWEGAYLENSDKQVLANKYV 234

Query: 303 EEAMSREAIDDLYAPLIMGCDIAGEGGD-KTVVVFRRGNIIEHIF 346
            ++   + +      L+ G D  G   D  T++     +   +I 
Sbjct: 235 VQSF-PDDLWKKADRLLFGADF-GFAKDLNTLIRMFILDDCLYIE 277


>gi|319762771|ref|YP_004126708.1| prophage mumc02, terminase, atpase subunit, putative
           [Alicycliphilus denitrificans BC]
 gi|317117332|gb|ADU99820.1| prophage MuMc02, terminase, ATPase subunit, putative
           [Alicycliphilus denitrificans BC]
          Length = 454

 Score = 77.3 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 78/292 (26%), Gaps = 33/292 (11%)

Query: 77  IFKCAISAGRGIGKTTLNAWMMLWLISTRP----GMSIICIANSETQLKNTLWAEVSKWL 132
            FK A+ A R  GKT  +   +    +           + ++  E Q +  +   V   L
Sbjct: 23  RFKIAMFA-RQCGKTFTSTLELALDCARAEALGQRRRWVILSRGERQAREAMNEGVKLHL 81

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
           + L             +   W   +    + +                P           
Sbjct: 82  AALSAGF-------KAYDYDWEPGIKALEVELPGGSKITA-------LPANPDTARGFSA 127

Query: 193 MAVFNDEASG--TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250
             V  DE +       I K++    ++        + S        FYD+     + W R
Sbjct: 128 N-VLLDEFAFHQDSRAIWKALFPVISKPGLKLR--VISTPNGKGNKFYDLMTGADDGWSR 184

Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR-- 308
           +  D           +   + +   D D+   E   ++  +    ++P   I        
Sbjct: 185 HTTDIYQAVADGLPRNIEELRKGAGDDDLWAQEFELKWLDEAS-AWLPFELITACEHEAA 243

Query: 309 -EAIDDLYAPLIMGCDIAGEGGDKTVVVFR----RGNIIEHIFDWSAKLIQE 355
            +       P  +G DIA    D  V+           +  I +       E
Sbjct: 244 GKPEHYQGGPCFVGVDIA-SRNDLFVIWVFELVGDVLWVREIIERRRITFAE 294


>gi|116751218|ref|YP_847905.1| hypothetical protein Sfum_3801 [Syntrophobacter fumaroxidans MPOB]
 gi|116700282|gb|ABK19470.1| conserved hypothetical protein [Syntrophobacter fumaroxidans MPOB]
          Length = 507

 Score = 77.3 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 66/253 (26%), Gaps = 29/253 (11%)

Query: 38  WGIKGKPLEHFSQPHRW--QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95
           WG         S    W  Q+E +     +                   GR +GK+ + +
Sbjct: 20  WGQAYLYNRDGSGRDYWPHQVEDLRCPAKNIIHLD--------------GRDVGKSIVLS 65

Query: 96  WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
              L    T  G   +  A  +  L +T+  E+   L   P        +    P     
Sbjct: 66  TDALHYAFTTRGGQGLIAAPHQGHL-DTIIEEIEFQLDSNPDLMNSIALTKYGKPKIHRK 124

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
                     S  Y      Y            + H   V+ DE +   +   K++    
Sbjct: 125 PYFRLEFTNGSVLYFRPAGAY-------GDAFRSLHVGRVWVDEGAWLTERAWKALRQCL 177

Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS-RYG 274
                 R     S    L    Y       + +  ++  +             ++    G
Sbjct: 178 KAGGTLRI---YSTPNGLRDTTYYRLTS-SDQFHVFRWPSWLNPLWTEDREAELLEFYGG 233

Query: 275 LDSDVARIEILGQ 287
            DS   + E+ G+
Sbjct: 234 RDSSGWQHEVAGE 246


>gi|302343251|ref|YP_003807780.1| hypothetical protein Deba_1821 [Desulfarculus baarsii DSM 2075]
 gi|301639864|gb|ADK85186.1| conserved hypothetical protein [Desulfarculus baarsii DSM 2075]
          Length = 507

 Score = 77.3 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 66/253 (26%), Gaps = 29/253 (11%)

Query: 38  WGIKGKPLEHFSQPHRW--QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95
           WG         S    W  Q+E +     +                   GR +GK+ + +
Sbjct: 20  WGQAYLYNRDGSGRDYWPHQVEDLRCPAKNIIHLD--------------GRDVGKSIVLS 65

Query: 96  WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
              L    T  G   +  A  +  L +T+  E+   L   P        +    P     
Sbjct: 66  TDALHYAFTTRGGQGLIAAPHQGHL-DTIIEEIEFQLDTNPDLMNSIALTKYGKPKIHRK 124

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
                     S  Y      Y            + H   V+ DE +   +   K++    
Sbjct: 125 PYFRLEFTNGSVLYFRPAGAY-------GDAFRSLHVGRVWVDEGAWLTERAWKALRQCL 177

Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS-RYG 274
                 R     S    L    Y       + +  ++  +             ++    G
Sbjct: 178 KAGGTLRI---YSTPNGLRDTTYYRLTS-SDQFHVFRWPSWLNPLWTEDREAELLEFYGG 233

Query: 275 LDSDVARIEILGQ 287
            DS   + E+ G+
Sbjct: 234 RDSSGWQHEVAGE 246


>gi|225220117|ref|YP_002720084.1| phage terminase large subunit [Enterobacteria phage SSL-2009a]
 gi|224986058|gb|ACN74622.1| phage terminase large subunit [Enterobacteria phage SSL-2009a]
          Length = 461

 Score = 77.3 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 45/309 (14%), Positives = 85/309 (27%), Gaps = 31/309 (10%)

Query: 44  PLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS 103
           P         +Q + +                      + +G G GK+ + A  ++ L++
Sbjct: 24  PTRVAQAVRLYQPDCLPHQVELLRDTKTKILG------LCSGFGGGKSWVAARKVIQLLT 77

Query: 104 TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
             PG   I    +   L   ++ E+ K       R  F  Q              +    
Sbjct: 78  LNPGYDGIVTEPTIPLLVKIMYPELEKAFDEAGFRWKFNKQ-------------DKIYNV 124

Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
           +    +T        E  + +      +   +  DE   T   +  +            F
Sbjct: 125 LVKGKWTRVI----CESMENYTRLIGVNAAWIVADEFDTTKQDVAMAAYHKLLGRLRAGF 180

Query: 224 --WIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280
               +  +T       Y IF        +  +  T     + + F + + S+Y   +++ 
Sbjct: 181 VRQFVIVSTPEGYRAMYQIFEVEKGSQKRLIRAKTTDNHHLPADFIDTLRSQY--PANLI 238

Query: 281 RIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGN 340
              + G F              E   S E        LI+G D         VV  RR  
Sbjct: 239 DAYLNGLFVNLTSGAVYKMFNREGNASTE-EVHPDDTLIIGMDFNVT-KMAAVVYVRR-Q 295

Query: 341 IIEHIFDWS 349
            I    ++ 
Sbjct: 296 RITENKEFR 304


>gi|163842863|ref|YP_001627267.1| hypothetical protein BSUIS_A0614 [Brucella suis ATCC 23445]
 gi|163673586|gb|ABY37697.1| protein of unknown function DUF264 [Brucella suis ATCC 23445]
          Length = 411

 Score = 77.3 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/266 (12%), Positives = 66/266 (24%), Gaps = 36/266 (13%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSML 135
           I  GRG GKT   A  +  +    P         I  +  +    +  +    S  LS+ 
Sbjct: 27  IMGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVS 86

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
                   ++                               +    +           A 
Sbjct: 87  RL-VRPRYEASRRRL------------------IWDNGAVATLFSSEDPDSLRGPQFDAA 127

Query: 196 FNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253
           + DE +    P      +       +  R  +    T                    +  
Sbjct: 128 WCDELAKWKNPQETWDMLQFGLRLGDNPRQVV---TTTPRAVPLLKALLTDRTVSMTHMR 184

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
                  +  GF + I  RY     + R E+ G+  ++        + IE+         
Sbjct: 185 TAENAGNLAEGFMQTIARRYAGT-RLGRQELDGELVEERPGALWSRDRIEQCFEEN--PP 241

Query: 314 LYAPLIMGCDI---AGEGGDKTVVVF 336
             A +++  D    +G+  D   +V 
Sbjct: 242 PLARIVVAVDPPASSGKASDACSIVV 267


>gi|260168345|ref|ZP_05755156.1| Phage DNA packaging protein [Brucella sp. F5/99]
          Length = 411

 Score = 77.3 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/266 (12%), Positives = 70/266 (26%), Gaps = 36/266 (13%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSML 135
           I  GRG GKT   A  +  +    P         I  +  +    +  +    S  LS+ 
Sbjct: 27  IMGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVS 86

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
                   ++                               +    +           A 
Sbjct: 87  RL-VRPRYEASRRRL------------------IWDNGAVATLFSSEDPDSLRGPQFDAA 127

Query: 196 FNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253
           + DE +    P      +       +  R  ++T+  R +                 +  
Sbjct: 128 WCDELAKWKNPQETWDMLQFGLRLGDNPR-QVVTTTPRAV--PLLKALLTDRTVSMTHMR 184

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
                  +  GF + I  RY     + R ++ G+  ++        + IE+         
Sbjct: 185 TAENAGNLAEGFMQTIARRYAGT-RLGRQKLDGELVEERPGALWSRDRIEQCFEEN--PP 241

Query: 314 LYAPLIMGCDI---AGEGGDKTVVVF 336
             A +++  D    +G+  D   +V 
Sbjct: 242 PLARIVVAVDPPASSGKASDACGIVV 267


>gi|62289552|ref|YP_221345.1| terminase large subunit [Brucella abortus bv. 1 str. 9-941]
 gi|62195684|gb|AAX73984.1| hypothetical terminase large subunit [Brucella abortus bv. 1 str.
           9-941]
          Length = 380

 Score = 76.9 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 69/265 (26%), Gaps = 36/265 (13%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSMLP 136
             GRG GKT   A  +  +    P         I  +  +    +  +    S  LS+  
Sbjct: 1   MGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVSR 60

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
                  ++                               +    +           A +
Sbjct: 61  L-VRPRYEASRRRL------------------IWDNGAVATLFSSEDPDSLRGPQFDAAW 101

Query: 197 NDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254
            DE +    P      +       +  R  ++T+  R +                 +   
Sbjct: 102 CDELAKWKNPQETWDMLQFGLRLGDNPR-QVVTTTPRAV--PLLKALLTDRTVSMTHMRT 158

Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314
                 +  GF + I  RY     + R E+ G+  ++        + IE+          
Sbjct: 159 AENAGNLAEGFMQTIARRYAGT-RLGRQELNGELVEERPGALWSRDRIEQCFEEN--PPP 215

Query: 315 YAPLIMGCDI---AGEGGDKTVVVF 336
            A +++  D    +G+  D   +V 
Sbjct: 216 LARIVVAVDPPASSGKASDACGIVV 240


>gi|126735952|ref|ZP_01751696.1| Putative large terminase [Roseobacter sp. CCS2]
 gi|126714509|gb|EBA11376.1| Putative large terminase [Roseobacter sp. CCS2]
          Length = 408

 Score = 76.9 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/267 (14%), Positives = 66/267 (24%), Gaps = 35/267 (13%)

Query: 81  AISAGRGIGKTTLNAWM---MLWLISTRPG---MSIICIANSETQLKNTLWAEVSKWLSM 134
            I  GRG GKT   A     M+             +  +  +  Q +  +    S  LS+
Sbjct: 15  VILGGRGAGKTRAGAEWVRRMVEGALPHAPGAARRVALVGETMDQAREVMVFGDSGILSV 74

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
            P     E  +                                                A
Sbjct: 75  CPPDRRPEWIAGRRLL------------------VWPNGAEAQVFSAHDPDSLRGPQFDA 116

Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
           V+ DE +     D     +       +  R  +    T R +    D+          + 
Sbjct: 117 VWADELAKWRRGDEAWDMLQFALRLGDSPRACVT--TTPRKSQMLSDLLERDTT-VVTHA 173

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
                   +   F + I  RYG  S + R E+ G    +          +      E   
Sbjct: 174 ATQANRANLADSFLKEIEGRYGGTS-LGRQEMEGVMLTEVEGALWSSADLAGCQVGEV-- 230

Query: 313 DLYAPLIMGCDI---AGEGGDKTVVVF 336
                +++  D    +  G D+  +V 
Sbjct: 231 SALDRIVVAIDPPGTSHAGSDQCGIVV 257


>gi|224582844|ref|YP_002636642.1| hypothetical protein SPC_1035 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224467371|gb|ACN45201.1| hypothetical protein SPC_1035 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 540

 Score = 76.9 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 42/356 (11%), Positives = 88/356 (24%), Gaps = 24/356 (6%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIKGKPLEHFSQPHRWQL 56
           P      +   + L  +  H E + + K F           WG+   P            
Sbjct: 12  PDYQMVFEWRMERLQRIRQHPEMLPALKQFYRTNPAQFIIDWGMTTDPRNIDYGLPVTIP 71

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
             +          +               R +G +     M   L      M I   +  
Sbjct: 72  FLLFPKQEEWIHWIMERWGKRENGITEKSREMGLSWTAIGMACSLCLFNKEMVIGFGSRK 131

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
           E  + ++     + +           ++         +A  +                  
Sbjct: 132 EEYV-DSTGDPKALFWKARKFVETLPVEFRGSWNEKKHAPYMRVEFP---------ETGA 181

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
             +                  DEA+     +        T        I  S+   +   
Sbjct: 182 VIKGEAGDNIGRGDRTTLYLVDEAAFLQRPLLIDAALSQTTRCR----IDLSSVNGMANP 237

Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
           F    +        +    R+    D  ++     +   +  V   E+   +        
Sbjct: 238 FAQKRHGGK--IPVFTFHWRSDPRKDDEWYRRECEKI-DNPVVVAQELDLNYSASAEGIL 294

Query: 297 IPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
           IP ++++ A+              +   D+A EG DK     R G ++E++ +WS 
Sbjct: 295 IPSDWVQAAVDAHIRLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSG 350


>gi|159184549|ref|NP_353972.2| large terminase phage packaging protein [Agrobacterium tumefaciens
           str. C58]
 gi|159139855|gb|AAK86757.2| large terminase phage packaging protein [Agrobacterium tumefaciens
           str. C58]
          Length = 402

 Score = 76.9 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 70/264 (26%), Gaps = 30/264 (11%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRP--GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
            GRG GKT   A  +  + S      + I  +A +    +  +   +S    +   RH  
Sbjct: 26  GGRGSGKTRAGAEWVHAVASAGKQSDLRIALVAETLGDAREVMIDGISGICRIAR-RHRP 84

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
             +                                     +             ++DE  
Sbjct: 85  AFEVSRRRL------------------LWPNGAMAQVFSSEDPESLRGPQFHLAWSDELG 126

Query: 202 GT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
               P      +          R  +    T R       + + P              +
Sbjct: 127 KWKYPQETWDMLQFGLRLGEMPRQLVT--TTPRPIPLLKALLSDPTSR-VARMPTAMNAQ 183

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319
            +  GF + +  RYG    + R EI G+   +          +E     EA  +  + ++
Sbjct: 184 NLSPGFLKAMQERYGGT-RLGRQEIGGELIDEREGALWKRADLEA--IIEAAHEPLSRIV 240

Query: 320 MGCD-IAGEGGDKTVVVFRRGNII 342
           +  D  AG G +    +   G  +
Sbjct: 241 VAVDPPAGVGENSCCGIVVAGLGM 264


>gi|322513476|ref|ZP_08066587.1| phage terminase [Actinobacillus ureae ATCC 25976]
 gi|322120735|gb|EFX92618.1| phage terminase [Actinobacillus ureae ATCC 25976]
          Length = 406

 Score = 76.9 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 70/266 (26%), Gaps = 31/266 (11%)

Query: 84  AGRGIGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            GRG  KT   A M   +   R        I+        L+++   EV + +       
Sbjct: 26  GGRGSAKTRTFAKMTAVIAYKRAMAGDSGVILRGREFMNSLEDSSLEEVKQAIRA----- 80

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                        +  +  E                +S  R +          +  + DE
Sbjct: 81  -----------ESFLNDFFEICEKYIRTKCGRVSYIFSGLRHNLDSIKSKARILFAWVDE 129

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-PLEDWKRYQIDTRTV 258
           A    ++    ++    E N    W+   N  + +      F   P ++    +++    
Sbjct: 130 AESVSEMAWSKLIPTVREHNSE-IWLTW-NPEKRDSATDKRFRQFPPDNSVIVEMNYTYN 187

Query: 259 EGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317
                   +  ++     D    R    G + +Q         Y E  +  E   D    
Sbjct: 188 PWFPDVLEQERLNDKKRLDDATYRWIWEGAYLEQSEAQIFRDKYQE--LEFEPNPDFDGS 245

Query: 318 LIMGCDIAGEGGDKTVV---VFRRGN 340
              G D  G   D T         G+
Sbjct: 246 YH-GLDF-GFANDPTAAIKCWVFDGD 269


>gi|148560043|ref|YP_001258583.1| putative terminase large subunit [Brucella ovis ATCC 25840]
 gi|148371300|gb|ABQ61279.1| putative terminase large subunit [Brucella ovis ATCC 25840]
          Length = 380

 Score = 76.9 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 69/265 (26%), Gaps = 36/265 (13%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSMLP 136
             GRG GKT   A  +  +    P         I  +  +    +  +    S  LS+  
Sbjct: 1   MGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVSR 60

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
                  ++                               +    +           A +
Sbjct: 61  L-VRPRYEASRRRL------------------IWDNGAVATLFSSEDADSLRGPQFDAAW 101

Query: 197 NDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254
            DE +    P      +       +  R  ++T+  R +                 +   
Sbjct: 102 CDELAKWKNPQETWDMLQFGLRLGDNPR-QVVTTTPRAV--PLLKALLTDRTVSMTHMRT 158

Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314
                 +  GF + I  RY     + R E+ G+  ++        + IE+          
Sbjct: 159 AENAGNLAEGFMQTIARRYAGT-RLGRQELDGELVEERPGALWSRDRIEQCFEEN--PPP 215

Query: 315 YAPLIMGCDI---AGEGGDKTVVVF 336
            A +++  D    +G+  D   +V 
Sbjct: 216 LARIVVAVDPPASSGKASDACGIVV 240


>gi|322420465|ref|YP_004199688.1| hypothetical protein GM18_2968 [Geobacter sp. M18]
 gi|320126852|gb|ADW14412.1| hypothetical protein GM18_2968 [Geobacter sp. M18]
          Length = 507

 Score = 76.9 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 67/253 (26%), Gaps = 29/253 (11%)

Query: 38  WGIKGKPLEHFSQPHRW--QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95
           WG         S    W  Q+E +     +                   GR +GK+ + +
Sbjct: 20  WGQAYLYNRDGSGRDYWPHQVEDLRCPAKNIIHLD--------------GRDVGKSIVLS 65

Query: 96  WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
              L    T  G   +  A  +  L +T+  E+   L   P        +    P+    
Sbjct: 66  TDALHYAFTTRGGQGLIAAPHQGHL-DTIIEEIEFQLDTNPDLMNSIALTKYGKPNIHRK 124

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
                     S  Y      Y            + H   V+ DE +   +   K++    
Sbjct: 125 PYFRLEFTNGSVLYFRPAGAY-------GDAFRSLHVGRVWVDEGAWLTERAWKALRQCL 177

Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS-RYG 274
                 R     S    L    Y       + +  ++  +             ++    G
Sbjct: 178 KAGGTLRI---YSTPNGLRDTTYYRLTS-SDQFHVFRWPSWLNPLWTEDREAELLEFYGG 233

Query: 275 LDSDVARIEILGQ 287
            DS   + E+ G+
Sbjct: 234 RDSSGWQHEVAGE 246


>gi|23501474|ref|NP_697601.1| terminase large subunit [Brucella suis 1330]
 gi|23347378|gb|AAN29516.1| terminase large subunit, putative [Brucella suis 1330]
          Length = 384

 Score = 76.9 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 70/265 (26%), Gaps = 36/265 (13%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSMLP 136
             GRG GKT   A  +  +    P         I  +  +    +  +    S  LS+  
Sbjct: 1   MGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVSR 60

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
                  ++                               +    +           A +
Sbjct: 61  L-VRPRYEASRRRL------------------IWDNGAVATLFSSEDPDSLRGPQFDAAW 101

Query: 197 NDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254
            DE +    P      +       +  R  ++T+  R +                 +   
Sbjct: 102 CDELAKWKNPQETWDMLQFGLRLGDNPR-QVVTTTPRAV--PLLKALLTDRTVSMTHMRT 158

Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314
                 +  GF + I  RY     + R E+ G+  ++ +      + IE+          
Sbjct: 159 AENAGNLAEGFMQTIARRYAGT-RLGRQELDGELVEERLGALWSRDRIEQCFEEN--PPP 215

Query: 315 YAPLIMGCDI---AGEGGDKTVVVF 336
            A +++  D    +G+  D   +V 
Sbjct: 216 LARIVVAVDPPASSGKASDACGIVV 240


>gi|225873954|ref|YP_002755413.1| hypothetical protein ACP_2370 [Acidobacterium capsulatum ATCC
           51196]
 gi|225791299|gb|ACO31389.1| conserved hypothetical protein [Acidobacterium capsulatum ATCC
           51196]
          Length = 492

 Score = 76.5 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/315 (11%), Positives = 72/315 (22%), Gaps = 61/315 (19%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
            +   R +G +T  A       +  PG   + +A++  +   +L+  V ++   LP    
Sbjct: 69  IVLKARQLGISTWIAARFFLKTALIPGTLTVQVAHT-QEAAESLFQMVHRFYRQLPEDTL 127

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
             +++   +        ++                Y  E               +   E 
Sbjct: 128 VPLRTARANARQLVFPAIDSE--------------YRVETAGDRNAGRGLTITNLHCTEV 173

Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI-DTR--- 256
           +  P    + + G    L+P    ++ S      G F++ +    E              
Sbjct: 174 ARWPGDAEEVLQGMRAALSPKGELVLESTPMGAAGCFWNTWQSAAETGMVQHFFPWWMEA 233

Query: 257 --------------------TVEGIDSGFHEGIISRYGLDSDVARIEI-----LGQFPQQ 291
                                   +                ++AR E         F   
Sbjct: 234 AYAAEPVDETSLTTEERALMEAHSLSPEQIGYRRQIRANYRELARQEYAETAHDC-FLAS 292

Query: 292 EVNNFIPHNYIEE--------------AMSREAIDDLYAPLIMGCDIAGEG--GDKTVVV 335
               F                       +      +     I+  D AG G  GD +V  
Sbjct: 293 GECYFDAAAIDRRLSAVEAPLRMRLGGRLQIWYPPEGQRRYIVAVDPAGGGSEGDYSVAQ 352

Query: 336 FRRGNIIEHIFDWSA 350
                      +   
Sbjct: 353 VIDEKTGLQCAELQM 367


>gi|86750600|ref|YP_487096.1| hypothetical protein RPB_3490 [Rhodopseudomonas palustris HaA2]
 gi|86573628|gb|ABD08185.1| Protein of unknown function DUF264 [Rhodopseudomonas palustris
           HaA2]
          Length = 423

 Score = 76.5 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 73/262 (27%), Gaps = 35/262 (13%)

Query: 84  AGRGIGKTTLNAWMM------LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
            GRG GKT   A  +      L   ++ P   I  +  +E  ++  +   VS  L++ P 
Sbjct: 40  GGRGAGKTRAGAEWIRCQALGLAPFASEPVARIALVGETEHDVREVMIEGVSGLLAVHPP 99

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
               + Q                                     D             ++
Sbjct: 100 DQRPQWQPSRKRLE------------------WSNGAVAQAFSADDPQSLRGPQFSCAWS 141

Query: 198 DEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255
           DE +           +       +  R   + + T R       +   P      +    
Sbjct: 142 DEMAKWRYAQDAFDMLQFGLRLGSQPRQ--VITTTPRPTALLKRLLADPS-AVTTHAPTR 198

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY 315
                +   F EG+++RY     + R E+ G+  +   +       IE     +A     
Sbjct: 199 ANALNLAPTFLEGVMARYAGT-RLGRQELDGELIEDRPDALWSRALIESCRVVDAPPLQ- 256

Query: 316 APLIMGCDI---AGEGGDKTVV 334
             L++  D    +G+  D   +
Sbjct: 257 -RLVVAVDPPASSGKRADSCGI 277


>gi|300088757|ref|YP_003759279.1| hypothetical protein Dehly_1680 [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299528490|gb|ADJ26958.1| conserved hypothetical protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 507

 Score = 76.5 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 66/253 (26%), Gaps = 29/253 (11%)

Query: 38  WGIKGKPLEHFSQPHRW--QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95
           WG         S    W  Q+E +     +                   GR +GK+ + +
Sbjct: 20  WGQAYLYNRDGSGRDYWPHQVEDLRCPAKNIIHLD--------------GRDVGKSIVLS 65

Query: 96  WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
              L    T  G   +  A  +  L +T+  E+   L   P        +    P     
Sbjct: 66  TDALHYAFTTRGGQGLIAAPHQGHL-DTIIEEIEFQLDSNPDLMNSIALTKYGKPKIHRK 124

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
                     S  Y      Y            + H   V+ DE +   +   K++    
Sbjct: 125 PYFRLEFTNGSVLYFRPAGAY-------GDAFRSLHVGRVWVDEGAWLTERAWKALRQCL 177

Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS-RYG 274
                 R     S    L    Y       E +  ++  +             ++    G
Sbjct: 178 KAGGTLRI---YSTPNGLRDTTYYRLTS-SEQFHVFRWPSWLNPLWTEDREAELLEFYGG 233

Query: 275 LDSDVARIEILGQ 287
            DS   + E+ G+
Sbjct: 234 RDSSGWQHEVAGE 246


>gi|170751343|ref|YP_001757603.1| hypothetical protein Mrad2831_4961 [Methylobacterium radiotolerans
           JCM 2831]
 gi|170657865|gb|ACB26920.1| protein of unknown function DUF264 [Methylobacterium radiotolerans
           JCM 2831]
          Length = 432

 Score = 76.5 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 71/280 (25%), Gaps = 36/280 (12%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134
           A+  GRG GKT   A  +  L    P         I  +  +   +++ +    S  L  
Sbjct: 47  AVIGGRGSGKTRTGAEWVDALARGDPAFAAAPVGRIALVGETHLDVRDVMVEGPSGLLG- 105

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
           LP R                                           +           A
Sbjct: 106 LPARGRARPTWSPSRRR----------------VDWSNGAVALAFSAEEPDALRGPQFGA 149

Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
            + DEA+    P+     +          R  +    T R       +   P        
Sbjct: 150 AWCDEAAKWRRPEAAFDMLQFGLRLGARPRNLVT--TTPRPVPLIRRLLADPRT-VVSRA 206

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
                   +   F + ++ RY     + R E+ G+      +       +E    R A  
Sbjct: 207 RTHDNAAHLAPDFLQQVVGRYAGT-RLGRQELDGELIADRDDALWTRAALEA--DRIAAA 263

Query: 313 DLYAPLIMGCDI---AGEGGDKTVVVF--RRGNIIEHIFD 347
                +++  D    +G   D   +V   R G     + D
Sbjct: 264 PDLGRIVVAVDPPAASGARSDACGIVAAGRAGGHAYVLAD 303


>gi|158422729|ref|YP_001524021.1| hypothetical protein AZC_1105 [Azorhizobium caulinodans ORS 571]
 gi|158329618|dbj|BAF87103.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571]
          Length = 436

 Score = 76.5 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/264 (13%), Positives = 69/264 (26%), Gaps = 35/264 (13%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSML 135
           +  GRG GKT   A  +  L   RP         I  +A +   L+  +   VS  L++ 
Sbjct: 51  VLGGRGAGKTRAGAEWVRGLALGRPPFAPAPVGRIALVAETMGDLREVMVEGVSGLLAVH 110

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
           P       +                                     +           A 
Sbjct: 111 PAAERPRWEPTRRRL------------------VWPNGAVAQGFSAEDPESLRGPQFEAA 152

Query: 196 FNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253
           + DE +     + +   +          R  +    T R +     +   P       + 
Sbjct: 153 WLDELAKWRRAEAVFDMLQFGLRLGAQPRQMVT--TTPRPSALLRRLMADPS--TVLSRA 208

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
            T       +      +      + + R E+ G+  +   +     +      +REA   
Sbjct: 209 TTAQNAFHLAPAFLDTVLARYGGTRLGRQELEGEIIEDRPDALWTRSA--LEAAREAAAP 266

Query: 314 LYAPLIMGCDI---AGEGGDKTVV 334
             A +++  D    +  G D   +
Sbjct: 267 PLARVVVALDPPASSRAGADACGI 290


>gi|330996205|ref|ZP_08320095.1| phage terminase, large subunit, PBSX family [Paraprevotella
           xylaniphila YIT 11841]
 gi|329573709|gb|EGG55300.1| phage terminase, large subunit, PBSX family [Paraprevotella
           xylaniphila YIT 11841]
          Length = 430

 Score = 76.5 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/284 (11%), Positives = 77/284 (27%), Gaps = 42/284 (14%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMM--LWLISTRPGM---SIICIANSETQLKNTLWAEVSK 130
             F   I+ GRG GK+   A  +  L    +R      SI+    +      ++  E+ +
Sbjct: 22  EHFIILITGGRGSGKSFNAATFIERLTFEQSRDRTFAHSILYCRYTMVSANLSIIPEIQE 81

Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
            + +     +F+                  +M    +      +T S  +       H  
Sbjct: 82  KIDIDGGSKYFKTT-----------RSDIVNMFSGGRIMFRGIKTSSGNQTAKLKSIHG- 129

Query: 191 HGMAVFNDEASGTPDII-NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
                  DEA    +      I+    +       I+  N    N + Y  +        
Sbjct: 130 -ITTFVCDEAEEWTNEQDFDKIMLSIRQKGIQNRIIIIMNPTDSNHFIYKKYIENTHKLV 188

Query: 250 ----------------RYQIDTRTV-EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292
                                     + +   F + +      + +     ++G++    
Sbjct: 189 EIDGVPVQISTHPNVLHIHTTYFDNIDNLSPQFIKEVEQMKAENPEKYAHTVIGRWADVA 248

Query: 293 VNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
                    + +++ +         + +G D  G   D+T +V 
Sbjct: 249 EGAIYKKWGVVKSIPQWCK-----KIALGLDF-GFTHDETAIVM 286


>gi|225621691|ref|YP_002724049.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
 gi|225547649|gb|ACN93626.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
          Length = 450

 Score = 76.5 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 85/288 (29%), Gaps = 43/288 (14%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMS 109
           Q E +  ++ H             K   S G   GKT L +++++  +           +
Sbjct: 49  QKEVLFDIESH----------DYSKVIFSGGIASGKTFLASYLLVKKLIENKSFYEQDTN 98

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
              I NS   L      ++ K  S+L    + + +S          +L            
Sbjct: 99  NFIIGNSIGLLMTNTVKQIEKICSLLGI-DYEKKKSGQSFCKIAGLKLN----------- 146

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                 Y  +  D F      +   ++ +EA+         ++    +       I  +N
Sbjct: 147 -----IYGGKNRDAFSKIRGGNSAIIYVNEATVIHKETLLEVIKRLRKG--KEIIIFDTN 199

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
                 +F   +    + +K Y   T       + F +     Y          + G++ 
Sbjct: 200 PESPAHYFKTDYIENTDVFKTYTFTTYDNPLNSADFIQTQEKLYRRFPAYRARVLYGEWI 259

Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
             E   F      E   +++     +   IM  D A   GGD T +  
Sbjct: 260 LNESTLFN-----EMIFNQDYE---FKSPIMYIDPAFSVGGDNTAICV 299


>gi|306845199|ref|ZP_07477775.1| Phage DNA packaging protein [Brucella sp. BO1]
 gi|306274358|gb|EFM56165.1| Phage DNA packaging protein [Brucella sp. BO1]
          Length = 430

 Score = 76.5 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 37/295 (12%), Positives = 74/295 (25%), Gaps = 39/295 (13%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTI--FKCA-ISAGRGIGKTTLNAWMMLWLISTRPG----- 107
            + + A D       +   P    ++   I  GRG GKT   A  +  +    P      
Sbjct: 17  RQILAAQDEWLIRARDAQLPPDGDWRVWLIMGGRGSGKTRAGAEWVSGMALGLPPFAGKP 76

Query: 108 -MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
              I  +  +    +  +    S  LS+         ++                     
Sbjct: 77  SGHIALVGETFNDAREVMVDGPSGILSVSRL-VRPRYEASRRRL---------------- 119

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFW 224
                     +    +           A + DE +    P      +       +  R  
Sbjct: 120 --IWDNGAVATLFSSEDPDSLRGPQFDAAWYDELAKWKNPQETWDMLQFGLRLGDNPRQV 177

Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
           +    T                    +         +  GF + I  RY     + R E+
Sbjct: 178 V---TTTPRAVPLLKALLTDRTVSMTHMRTAENAGNLAEGFMQTIARRYAGT-RLGRQEL 233

Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVVVF 336
            G+  ++        + IE+           A +++  D    +G+  D   +V 
Sbjct: 234 DGELVEERPGALWSRDRIEQCFEEN--PPPLARIVVAVDPPASSGKASDACGIVV 286


>gi|78356952|ref|YP_388401.1| hypothetical protein Dde_1909 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219357|gb|ABB38706.1| hypothetical protein Dde_1909 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 507

 Score = 76.5 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 66/253 (26%), Gaps = 29/253 (11%)

Query: 38  WGIKGKPLEHFSQPHRW--QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95
           WG         S    W  Q+E +     +                   GR +GK+ + +
Sbjct: 20  WGQAYLYNRDGSGRDYWPHQVEDLRCPAKNIIHLD--------------GRDVGKSIVLS 65

Query: 96  WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
              L    T  G   +  A  +  L +T+  E+   L   P        +    P     
Sbjct: 66  TDALHYAFTTRGGQGLIAAPHQGHL-DTIIEEIEFQLDTNPDLMNSIALTKYGKPKIHRK 124

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
                     S  Y      Y            + H   V+ DE +   +   K++    
Sbjct: 125 PYFRLEFTNGSVLYFRPAGAY-------GDAFRSLHVGRVWVDEGAWLTERAWKALRQCL 177

Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS-RYG 274
                 R     S    L    Y       E +  ++  +             ++    G
Sbjct: 178 KAGGTLRI---YSTPNGLRDTTYYRLTS-SEQFHVFRWPSWLNPLWTEDREAELLEFYGG 233

Query: 275 LDSDVARIEILGQ 287
            DS   + E+ G+
Sbjct: 234 RDSSGWQHEVAGE 246


>gi|94990333|ref|YP_598433.1| terminase large subunit [Streptococcus phage 10270.2]
 gi|94994256|ref|YP_602354.1| Terminase large subunit [Streptococcus phage 10750.2]
 gi|94543841|gb|ABF33889.1| Terminase large subunit [Streptococcus phage 10270.2]
 gi|94547764|gb|ABF37810.1| Terminase large subunit [Streptococcus phage 10750.2]
          Length = 432

 Score = 76.5 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 84/290 (28%), Gaps = 29/290 (10%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
           NP I   A   GRG GK++  A  ++  +  +  ++ +CI  ++  L+ +++ ++   +S
Sbjct: 30  NPQILNIACKGGRGSGKSSNIA-FIISRLIIQYPVNAVCIRKTDNTLEQSVYEQIKWAIS 88

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
                 +F+     L             +    +   I  R          +        
Sbjct: 89  EQGLERYFKFNKSPLR------------ITYIPRGNYIVFRGAQNPERIKSLKDSRFPFA 136

Query: 194 AVFNDE-ASGTPDIINKSILGFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFNIPLED 247
             + +E A    +   K+I                +  T N   R   W    +    + 
Sbjct: 137 IGWIEELAEFKTEDEVKTITNSLLRGELGDGLFYKFFYTYNPPKRKQSWVNKKYESQFQP 196

Query: 248 WKRY--QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA 305
              +      +    I   F     +         R E LG+         +P + +   
Sbjct: 197 SNTFVHASTYKDNPFIAKEFIAEAEATRERSERRYRWEYLGEAIGSG---VVPFDNLRFE 253

Query: 306 MSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR----GNIIEHIFDWSAK 351
              +     +  +  G D  G   D    V        N I  I ++  +
Sbjct: 254 RITDEQVADFDNIRNGID-YGYATDPLAFVRWHYDKKKNGIYAIDEYYGQ 302


>gi|323139470|ref|ZP_08074518.1| hypothetical protein Met49242DRAFT_3906 [Methylocystis sp. ATCC
           49242]
 gi|322395272|gb|EFX97825.1| hypothetical protein Met49242DRAFT_3906 [Methylocystis sp. ATCC
           49242]
          Length = 439

 Score = 76.5 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 73/256 (28%), Gaps = 33/256 (12%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSML 135
           I  GRG GKT   A  +  L   RP         I  I  +   ++  +   VS  L++ 
Sbjct: 54  ILGGRGAGKTRAGAEWVKGLALGRPHFCTRPVSRIALIGETAADVREVMIEGVSGLLAIH 113

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
             R     +S                          +         +           A 
Sbjct: 114 GKRDRPRWESSRRRL------------------VWDSGVVAQAFSAEDPESLRGPQFHAA 155

Query: 196 FNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253
           + DE +           +       +  R  +    T R      D+   P        +
Sbjct: 156 WCDELAKWRYARETWDMLQFGLRLGDWPRQLVT--TTPRPTPLLKDLIAHPAT-VLTRAL 212

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
                  +   F E ++++Y     + R E+ G+  ++  +     + IE +   +A   
Sbjct: 213 TRENAANLAPSFLESVVAQYAGT-RLGRQELDGEIVEERKDALWTRDLIEASRVADAP-- 269

Query: 314 LYAPLIMGCD-IAGEG 328
             A +++  D  A  G
Sbjct: 270 RLARIVVAVDPPASFG 285


>gi|156564098|ref|YP_001429607.1| terminase large subunit [Bacillus phage 0305phi8-36]
 gi|154622795|gb|ABS83675.1| terminase large subunit [Bacillus phage 0305phi8-36]
          Length = 635

 Score = 76.5 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 67/223 (30%), Gaps = 22/223 (9%)

Query: 45  LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
           L    +P  W  E ++         +        +  +  GR +GKT     M+LW   T
Sbjct: 50  LAILDKPKFWAAETLKWFCRDYQEPMLQEMADSKRTVLRLGRRLGKTETMCIMILWHAFT 109

Query: 105 RPGM------SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
           +P         I+ IA  E Q+ + ++  +S+ + M    +               +  +
Sbjct: 110 QPNKGPNNQYDILIIAPYEEQV-DLIFKRLSQLIDMSGDVN--------------PSRDI 154

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218
           ++ + + +        T   +               +  DE     +    +I+    E 
Sbjct: 155 DKHIELPNGTVIH-GITAGSKSGSGAANTRGQRADLIVLDEMDYMGESEITNIMNIRNEA 213

Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI 261
                 I+ S        +Y       + + +    TR   G 
Sbjct: 214 PERIKMIVASTPSGRRDSYYKWCVGATKTYAQDDELTRQNGGR 256


>gi|67920466|ref|ZP_00513986.1| conserved hypothetical protein [Crocosphaera watsonii WH 8501]
 gi|67857950|gb|EAM53189.1| conserved hypothetical protein [Crocosphaera watsonii WH 8501]
          Length = 244

 Score = 76.5 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 72/243 (29%), Gaps = 37/243 (15%)

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-------------GMSII 111
           H       ++P  F+  +  GR  GK+ L     +      P               +++
Sbjct: 9   HKSQLEVFNDPQKFQVLVC-GRRFGKSHLQVTKHVIDCLMFPKLMPGYNVKQQTMETAVL 67

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
               +  Q +  LW  + K L   P+         ++   G   +++             
Sbjct: 68  VGMPTLKQARKILWKPLVKTLENCPYVDKISRSDYTIRFKGNRPDII------------- 114

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNT 230
                +    +            V  DE     P +I+  I+    +  P+   + T   
Sbjct: 115 ----LAGLNDNAGDRARGLKLWRVCIDEVQDVRPSVIDAVIIPAMAD-TPHSRALFTGTP 169

Query: 231 RRLNGWFYDIFNIPL--EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
           +  N   Y++F +    +DWK Y   T T   I     E    R      +   E   Q+
Sbjct: 170 KGKNNHLYNLFTMERDNDDWKSYNFPTWTNPLISKDEVERARKRLS--PRLFSQEFEAQW 227

Query: 289 PQQ 291
            + 
Sbjct: 228 KES 230


>gi|332557899|ref|ZP_08412221.1| hypothetical protein RSWS8N_02570 [Rhodobacter sphaeroides WS8N]
 gi|332275611|gb|EGJ20926.1| hypothetical protein RSWS8N_02570 [Rhodobacter sphaeroides WS8N]
          Length = 432

 Score = 76.5 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 76/288 (26%), Gaps = 35/288 (12%)

Query: 81  AISAGRGIGKTTLNAWMMLWLIS-TRPG-----MSIICIANSETQLKNTLWAEVSKWLSM 134
            +  GRG GKT   A  +   +   RPG       +  +A +  Q +  +    S  L+ 
Sbjct: 39  VVMGGRGAGKTRAGAEWVRAEVEGARPGDPGRSRHVALVAETIDQAREVMVFGESGILAC 98

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
            P     E ++                                                A
Sbjct: 99  SPPDRRPEWEAGRKRL------------------VWPNGAVAQIFSAHDPESLRGPQFDA 140

Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
            + DE +     +     +       +  R  ++T+  R +                 + 
Sbjct: 141 AWADELAKWGRAEEAWDMLQFSLRLGDQPR-QVVTTTPRNV--PVLRHILDNPSTVVTHA 197

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
                   +   F   + +RY     + R E+ G   +           IE   SR    
Sbjct: 198 PTEANRAYLARSFLAEVHARYDGT-RLGRQELEGLLLEDVEGALWTTARIEA--SRLEEP 254

Query: 313 DLYAPLIMGCDIAGEG---GDKTVVVFRRGNIIEHIFDWSAKLIQETN 357
                +++  D    G    D+  ++           DW A ++++ +
Sbjct: 255 GPLDRIVVAVDPPVTGTEASDECGILVVGARTAGPPQDWRAVVLEDAS 302


>gi|78355964|ref|YP_387413.1| hypothetical protein Dde_0917 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218369|gb|ABB37718.1| hypothetical protein Dde_0917 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 507

 Score = 76.5 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 66/253 (26%), Gaps = 29/253 (11%)

Query: 38  WGIKGKPLEHFSQPHRW--QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95
           WG         S    W  Q+E +     +                   GR +GK+ + +
Sbjct: 20  WGQAYLYNRDGSGRDYWPHQVEDLRCPAKNIIHLD--------------GRDVGKSIVLS 65

Query: 96  WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
              L    T  G   +  A  +  L +T+  E+   L   P        +    P     
Sbjct: 66  TDALHYAFTTRGGQGLVAAPHQGHL-DTIIEEIEFQLDTNPDLMNSIALTKYGKPKIHRK 124

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
                     S  Y      Y            + H   V+ DE +   +   K++    
Sbjct: 125 PYFRLEFTNGSVLYFRPAGAY-------GDAFRSLHVGRVWVDEGAWLTERAWKALRQCL 177

Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS-RYG 274
                 R     S    L    Y       E +  ++  +             ++    G
Sbjct: 178 KAGGTLRI---YSTPNGLRDTTYYRLTS-SEQFHVFRWPSWLNPLWTEDREAELLEFYGG 233

Query: 275 LDSDVARIEILGQ 287
            DS   + E+ G+
Sbjct: 234 RDSSGWQHEVAGE 246


>gi|307591253|ref|YP_003900462.1| hypothetical protein Cyan7822_6211 [Cyanothece sp. PCC 7822]
 gi|306986818|gb|ADN18693.1| conserved hypothetical protein [Cyanothece sp. PCC 7822]
          Length = 474

 Score = 76.1 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 47/343 (13%), Positives = 94/343 (27%), Gaps = 69/343 (20%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P+ +Q   +  +  H                I+  R +G T L A   L+      G   
Sbjct: 50  PYDYQKTLIALIKTHHT------------IVIAKTRQLGITELIANYFLFKACHNEGYLG 97

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           +  + +++   N     + + +  L                 +     +     D +   
Sbjct: 98  VIFSKTQSDTSNIA-KRIRRQIDSL-----------------YEYIETKTDSLTDIELVN 139

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTS 228
                +    P+   G        +  DE++     + I KS +   T +      I+ S
Sbjct: 140 GGRLLFRNSTPNGARGL--ESVSDILYDESAFVDEIEEIYKSSIPCTTVVGSEARIIILS 197

Query: 229 NTRRLNGWFYD--------------------------IFNIPLEDWKRYQIDTRTVEGID 262
                +GW++D                           + I    W ++ +         
Sbjct: 198 TPNGQSGWYWDKLSSNNGDRDILEICEQIRTEKIEPIQYWIDNNQWCKFIVHWLGHPKFS 257

Query: 263 SG---FHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319
                +   I +++ L  D+   E    F             + +    +  +D  +  I
Sbjct: 258 QQKETYLRDIKAQFDLPEDIIEQEYNLSF-THSEVIVFSSEIVRKNAIGQWENDPKSNCI 316

Query: 320 M--GCDIAGEGGDKTVVVFRR--GNIIEHIFDW-SAKLIQETN 357
              G D +  G D TV    R   N    +  +   K   E N
Sbjct: 317 YYFGIDTSLLGNDYTVCTILREIDNRYHLVKMYRQRKKTHEYN 359


>gi|125974959|ref|YP_001038869.1| PBSX family phage terminase large subunit [Clostridium thermocellum
           ATCC 27405]
 gi|125715184|gb|ABN53676.1| phage terminase, large subunit, PBSX family [Clostridium
           thermocellum ATCC 27405]
          Length = 418

 Score = 76.1 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/260 (11%), Positives = 72/260 (27%), Gaps = 20/260 (7%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
            +  GRG  K++  +  ++  +   P  + + +   +  +K++++ ++   +  L    +
Sbjct: 33  WLKGGRGSTKSSFVSIEIILGVMKDPNANAVALRKVKETIKDSVFEQLVWAIEKLKVTEY 92

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
                       W  +     +        I  R   + R    +     +   ++ +E 
Sbjct: 93  ------------WEIKHNPMELTYLPTGQKILFRGADKPRKIKSIKVSRGYVKFIWYEEV 140

Query: 201 -SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG-WFYDIFNIPLEDWKRYQIDTRTV 258
                    + I               T N       W  +   I   D K +     TV
Sbjct: 141 DEFLGMEEIRIINQSLMRGGEQFVVFYTYNPPNRVNAWVNEEILIDRPDRKVHHSTYLTV 200

Query: 259 E--GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA 316
               +   F         ++    R E LG+        F     ++     +     + 
Sbjct: 201 PRDWLGEQFFIEAEHLKKVNEKAYRHEYLGEVTGTGGEVF---TNVKARKINDEEIKAFD 257

Query: 317 PLIMGCDIAGEGGDKTVVVF 336
            +  G D  G   D    + 
Sbjct: 258 RIKRGLDF-GYAVDPAAYIV 276


>gi|188494674|ref|ZP_03001944.1| gp33 TerL [Escherichia coli 53638]
 gi|188489873|gb|EDU64976.1| gp33 TerL [Escherichia coli 53638]
          Length = 539

 Score = 76.1 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 44/365 (12%), Positives = 94/365 (25%), Gaps = 40/365 (10%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIK--------GKPLEHF 48
           P      +   + L  +  + E + + K F           WG+         G P+   
Sbjct: 12  PDYQMVFEWRMERLQRIRQNPEILPALKQFYRTNPAQFIIDWGMTTDPRNIDYGLPVTIP 71

Query: 49  SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108
                 Q E++  +     +  N              R +G +     +   L      M
Sbjct: 72  FLLFPKQEEWIHWIMERWSNRENGITDKS--------REMGLSWTAIGLACSLCLFNKEM 123

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            I   +  E  + ++     + +           ++         +A  +          
Sbjct: 124 VIGFGSRKEEYV-DSTGDPKALFWKARKFVETLPVEFRGSWSEKKHAPYMRVEFP----- 177

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
                     +                  DEA+     +        T        I  S
Sbjct: 178 ----ETGAVIKGEAGDNIGRGDRTTLYLVDEAAFLQRPLLIDAALSQTTRCR----IDLS 229

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
           +   +N  F    +        +    R+    D  ++     +   +  +   E+   +
Sbjct: 230 SVNGMNNPFAQKRH--SGKIPVFTFHWRSDPRKDDEWYHKECEKI-DNPVIVAQELDLNY 286

Query: 289 PQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
                   IP  +++ A+              +   D+A EG DK     R G ++  + 
Sbjct: 287 QASAEGILIPSEWVQAAVDAHIRLGIQPGGQRLGAMDVADEGRDKNACSLRYGILLNDVQ 346

Query: 347 DWSAK 351
           +WS K
Sbjct: 347 EWSGK 351


>gi|56808979|ref|ZP_00366686.1| COG1783: Phage terminase large subunit [Streptococcus pyogenes M49
           591]
 gi|71910836|ref|YP_282386.1| terminase large subunit [Streptococcus pyogenes MGAS5005]
 gi|71853618|gb|AAZ51641.1| terminase large subunit [Streptococcus pyogenes MGAS5005]
          Length = 424

 Score = 76.1 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 84/290 (28%), Gaps = 29/290 (10%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
           NP I   A   GRG GK++  A  ++  +  +  ++ +CI  ++  L+ +++ ++   +S
Sbjct: 22  NPQILNIACKGGRGSGKSSNIA-FIISRLIIQYPVNAVCIRKTDNTLEQSVYEQIKWAIS 80

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
                 +F+     L             +    +   I  R          +        
Sbjct: 81  EQGLERYFKFNKSPLR------------ITYIPRGNYIVFRGAQNPERIKSLKDSRFPFA 128

Query: 194 AVFNDE-ASGTPDIINKSILGFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFNIPLED 247
             + +E A    +   K+I                +  T N   R   W    +    + 
Sbjct: 129 IGWIEELAEFKTEDEVKTITNSLLRGELGDGLFYKFFYTYNPPKRKQSWVNKKYESQFQP 188

Query: 248 WKRY--QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA 305
              +      +    I   F     +         R E LG+         +P + +   
Sbjct: 189 SNTFVHASTYKDNPFIAKEFIAEAEATRERSERRYRWEYLGEAIGSG---VVPFDNLRFE 245

Query: 306 MSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR----GNIIEHIFDWSAK 351
              +     +  +  G D  G   D    V        N I  I ++  +
Sbjct: 246 RITDEQVADFDNIRNGID-YGYATDPLAFVRWHYDKKKNGIYAIDEYYGQ 294


>gi|238765385|ref|ZP_04626308.1| Gp33 TerL [Yersinia kristensenii ATCC 33638]
 gi|238696377|gb|EEP89171.1| Gp33 TerL [Yersinia kristensenii ATCC 33638]
          Length = 501

 Score = 76.1 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/267 (13%), Positives = 78/267 (29%), Gaps = 19/267 (7%)

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
           R +G +  +  +   L      M I   +  E  + +T   +     ++      F    
Sbjct: 64  REMGLSWTSIGLACSLCLFNKEMVIGFGSRKEEYVDSTGDPK-----ALFWKARKFVETL 118

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
            S     W  +     M ++        +  + +                F DE++    
Sbjct: 119 PSEFRGSWSEKKHAPYMRVEFPDTGAVIKGEAGDNIG-----RGDRTTLYFVDESAFLQR 173

Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265
            +        T        I  S+   +N  F    +        +    R+    D  +
Sbjct: 174 PLLIDAALSQTTRCR----IDLSSVNGMNNPFAQKRHGGK--IPVFTFHWRSDPRKDDEW 227

Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD--LYAPLIMGCD 323
           +     +   +  V   E+   +        IP  +++ A+      D       +   D
Sbjct: 228 YRKECEKI-DNPVVVAQELDLNYQASAEGILIPSEWVQAAIDAHIHLDIQPSGARLGAMD 286

Query: 324 IAGEGGDKTVVVFRRGNIIEHIFDWSA 350
           +A EG DK     R G +++ + +WS 
Sbjct: 287 VADEGRDKNGFAIRYGFLLQDVKEWSG 313


>gi|254504019|ref|ZP_05116170.1| conserved hypothetical protein [Labrenzia alexandrii DFL-11]
 gi|222440090|gb|EEE46769.1| conserved hypothetical protein [Labrenzia alexandrii DFL-11]
          Length = 438

 Score = 76.1 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 27/251 (10%), Positives = 61/251 (24%), Gaps = 31/251 (12%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTR----PG--MSIICIANSETQLKNTLWAEVSKWLSML 135
           +  GRG GKT   A  +           PG    I  +  +   ++  +   VS  L++ 
Sbjct: 53  LMGGRGAGKTRAGAEWIRARALGHGWCEPGFAGRIALVGETYADVREVMVEGVSGLLAVH 112

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
           P     +                                       +             
Sbjct: 113 PGGERPQWTPSRRRLE------------------WPNGAVAQTFSAEDPEALRGPQFDIA 154

Query: 196 FNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253
           + DE +     +     +       +  R   + + T R       +             
Sbjct: 155 WCDELAKWTYAEETFDMLQFGLRLGSKPRQ--LITTTPRPVPLLKRLMKQAGTAIT--HA 210

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
            T+      +      +      + + R E+ G+  +   +     + +E A    A  +
Sbjct: 211 PTKANALFLAPGFLEAVVGRYGGTRLGRQELDGELIEDRPDALWSRDGLEAARV-AAAPE 269

Query: 314 LYAPLIMGCDI 324
               +++  D 
Sbjct: 270 DLTRIVIAIDP 280


>gi|126725398|ref|ZP_01741240.1| Putative large terminase [Rhodobacterales bacterium HTCC2150]
 gi|126704602|gb|EBA03693.1| Putative large terminase [Rhodobacterales bacterium HTCC2150]
          Length = 420

 Score = 76.1 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 38/305 (12%), Positives = 79/305 (25%), Gaps = 36/305 (11%)

Query: 70  VNNSNPTIFKCAIS-AGRGIGKTTLNAWMMLWLI------STRPGMSIICIANSETQLKN 122
                   ++  +   GRG GKT   A  +   +             +  +  +  Q + 
Sbjct: 16  QVAPLGEDWRTWVCLGGRGAGKTRAGAEWVRSEVEGATATCEGRSKRVALVGETIDQARE 75

Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182
            +    S  L+  P     E Q+                             T       
Sbjct: 76  VMVFGESGILACCPPDRRPEWQAGRKRL------------------VWPNGATAQIFSAH 117

Query: 183 TFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
                      A + DE +     +     +       +  R  I+T+  R +       
Sbjct: 118 DPESLRGPQFDAAWVDELAKWKRAEEAWDQLQFGLRLRDAPR-QIVTTTPRNVA--VLKD 174

Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
                               + + F E I  ++     + R E+ G+  +         +
Sbjct: 175 LMKQETTVVTSAPTKANRAYLAASFLEDIHRKFAGT-RLGRQELEGELVEDAEGAMWTSS 233

Query: 301 YIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETN 357
            +E     E     +  +++  D    A    D   +V     +      W A +I++ +
Sbjct: 234 MLEAGRIDEFP--EFDRIVVAVDPPVTATSNSDLCGIVVVGACLQGPPQSWQAYVIEDCS 291

Query: 358 QEGCP 362
            +G P
Sbjct: 292 IKGTP 296


>gi|268597147|ref|ZP_06131314.1| phage terminase [Neisseria gonorrhoeae FA19]
 gi|268550935|gb|EEZ45954.1| phage terminase [Neisseria gonorrhoeae FA19]
          Length = 426

 Score = 76.1 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/279 (11%), Positives = 74/279 (26%), Gaps = 26/279 (9%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
             P  +K       G  K+   A  +L L + RP + I+C    +  +++++   +   +
Sbjct: 20  FKPCRYKVMYGGRGGG-KSHGAASALLALGAQRP-LRILCAREIQKSMRDSVHRLLKDKV 77

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
           + L   H++E+                  +   +    +     S               
Sbjct: 78  AQLGLGHFYEITD--------------FEIRGANGTLFVFSGLQS---HTVDSIKSFEGI 120

Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRY 251
             V+ +E  G        +     +     +  +  N        Y  F  +P ED    
Sbjct: 121 DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITL--NPDMETDETYRRFIAMPSEDTWLC 178

Query: 252 QIDTRTVEGIDSGFHEGI-ISRYGLDSDVARIEILGQFPQQEVNNFIP---HNYIEEAMS 307
           +I+ R         +     ++  +  +       G+               +       
Sbjct: 179 EINWRDNPWFPEALNRERLKAQRSMSKEDYGHIWEGRPRMVSEGAVYRHEIQDAFHSGRV 238

Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
                D   P+    D+         +V R    +  I 
Sbjct: 239 TLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLTSVRIIG 277


>gi|240081035|ref|ZP_04725578.1| putative phage associated protein [Neisseria gonorrhoeae FA19]
 gi|240117647|ref|ZP_04731709.1| putative phage associated protein [Neisseria gonorrhoeae PID1]
 gi|240123201|ref|ZP_04736157.1| putative phage associated protein [Neisseria gonorrhoeae PID332]
 gi|268603349|ref|ZP_06137516.1| phage terminase [Neisseria gonorrhoeae PID1]
 gi|268681827|ref|ZP_06148689.1| phage terminase [Neisseria gonorrhoeae PID332]
 gi|268587480|gb|EEZ52156.1| phage terminase [Neisseria gonorrhoeae PID1]
 gi|268622111|gb|EEZ54511.1| phage terminase [Neisseria gonorrhoeae PID332]
          Length = 424

 Score = 76.1 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/279 (11%), Positives = 74/279 (26%), Gaps = 26/279 (9%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
             P  +K       G  K+   A  +L L + RP + I+C    +  +++++   +   +
Sbjct: 18  FKPCRYKVMYGGRGGG-KSHGAASALLALGAQRP-LRILCAREIQKSMRDSVHRLLKDKV 75

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
           + L   H++E+                  +   +    +     S               
Sbjct: 76  AQLGLGHFYEITD--------------FEIRGANGTLFVFSGLQS---HTVDSIKSFEGI 118

Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRY 251
             V+ +E  G        +     +     +  +  N        Y  F  +P ED    
Sbjct: 119 DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITL--NPDMETDETYRRFIAMPSEDTWLC 176

Query: 252 QIDTRTVEGIDSGFHEGI-ISRYGLDSDVARIEILGQFPQQEVNNFIP---HNYIEEAMS 307
           +I+ R         +     ++  +  +       G+               +       
Sbjct: 177 EINWRDNPWFPEALNRERLKAQRSMSKEDYGHIWEGRPRMVSEGAVYRHEIQDAFHSGRV 236

Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
                D   P+    D+         +V R    +  I 
Sbjct: 237 TLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLTSVRIIG 275


>gi|240115343|ref|ZP_04729405.1| putative phage associated protein [Neisseria gonorrhoeae PID18]
          Length = 424

 Score = 75.8 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/279 (11%), Positives = 74/279 (26%), Gaps = 26/279 (9%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
             P  +K       G  K+   A  +L L + RP + I+C    +  +++++   +   +
Sbjct: 18  FKPCRYKVMYGGRGGG-KSHGAASALLALGAQRP-LRILCAREIQKSMRDSVHRLLKDKV 75

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
           + L   H++E+                  +   +    +     S               
Sbjct: 76  AQLGLGHFYEITD--------------FEIRGANGTLFVFSGLQS---HTVDSIKSFEGI 118

Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRY 251
             V+ +E  G        +     +     +  +  N        Y  F  +P ED    
Sbjct: 119 DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITL--NPDMETDETYRRFIAMPSEDTWLC 176

Query: 252 QIDTRTVEGIDSGFHEGI-ISRYGLDSDVARIEILGQFPQQEVNNFIP---HNYIEEAMS 307
           +I+ R         +     ++  +  +       G+               +       
Sbjct: 177 EINWRDNPWFPEALNRERLKAQRSMSKEDYGHIWEGRPRMVSEGAVYRHEIQDAFHSGRV 236

Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
                D   P+    D+         +V R    +  I 
Sbjct: 237 TLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLTSVRIIG 275


>gi|323173153|gb|EFZ58784.1| gp33 TerL protein [Escherichia coli LT-68]
          Length = 539

 Score = 75.8 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 45/365 (12%), Positives = 95/365 (26%), Gaps = 40/365 (10%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIK--------GKPLEHF 48
           P      +   + L  +  + E + + K F           WG+         G P+   
Sbjct: 12  PDYQMVFEWRMERLQRIRQNPEILPALKQFYRTNPAQFIIDWGMTTDPRNIDYGLPVTIP 71

Query: 49  SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108
                 Q E++  +     +  N              R +G +     +   L      M
Sbjct: 72  FLLFPKQEEWIHWIMERWSNRENGITEKS--------REMGLSWTAIGLACSLCLFNKEM 123

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            I   +  E  + ++     + +           ++         +A  +          
Sbjct: 124 VIGFGSRKEEYV-DSTGDPKALFWKARKFVETLPVEFRGSWSEKKHAPYMRVEFP----- 177

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
                     +                F DEA+     +        T        I  S
Sbjct: 178 ----ETGAVIKGEAGDNIGRGDRTTLYFVDEAAFLQRPLLIDAALSQTTRCR----IDLS 229

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
           +   +N  F    +        +    R+    D  ++     +   +  +   E+   +
Sbjct: 230 SVNGMNNPFAQKRH--SGKIPVFTFHWRSDPRKDDEWYHKECEKI-DNPVIVAQELDLNY 286

Query: 289 PQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
                   IP  +++ A+              +   D+A EG DK     R G ++  + 
Sbjct: 287 QASAEGILIPSEWVQAAVDAHIRLGIQPGGQRLGAMDVADEGRDKNACSLRYGILLNDVQ 346

Query: 347 DWSAK 351
           +WS K
Sbjct: 347 EWSGK 351


>gi|325529303|gb|EGD06247.1| phage terminase, large subunit [Burkholderia sp. TJI49]
          Length = 411

 Score = 75.8 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 72/273 (26%), Gaps = 33/273 (12%)

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-SIICIANSETQLKNTLWAEVSKWLS 133
           P  +K A   GRG GK+       LWL          +C+  +   L+ ++   +   + 
Sbjct: 18  PARYKGA-HGGRGSGKSHFFGE--LWLEENVSDKFDFVCLRETLKSLEFSVKKLLEAKIE 74

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
                 +FE+Q   +        + E                   +              
Sbjct: 75  AFNAGDYFEVQDRRILSRHGGVTIFEG-----------------MQNHTADSIKSLEGFD 117

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN--IPLEDWKRY 251
             + +EA    +     +     +      W    N  +       +     P  D    
Sbjct: 118 RAWFEEAQNATEKSLTLLRPTLRKPGSQ-LWFGW-NPGKPTDPIDVLLRGDEPPPDSIVV 175

Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311
           + +      +     E +      D D      LG + Q+       +  +E     E  
Sbjct: 176 EANFMDNPWLPRELQEEMEYDKRRDPDKYAHVWLGGYQQRSEARVFKNWRVE-----EFE 230

Query: 312 DDLYAPLIMGCDIAGEGGDKTVV--VFRRGNII 342
                   +G D  G   D +V+      GN +
Sbjct: 231 RPEGTVFRLGAD-WGFASDPSVLIRCDIDGNRL 262


>gi|62362371|ref|YP_224236.1| putative terminase large subunit [Listonella phage phiHSIC]
 gi|58219993|gb|AAW67505.1| putative terminase large subunit [Listonella phage phiHSIC]
          Length = 408

 Score = 75.8 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 73/268 (27%), Gaps = 31/268 (11%)

Query: 70  VNNSNPTIFKCAISAGRGIGKTTLNA-WMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
                   F+ A  + RG GK+   A    +W       M I+C    +  +K +  AE+
Sbjct: 17  EQPRGAVRFRGAYGS-RGSGKSFNFAKMAAIWGAI--EKMRILCTRELQVSIKESFHAEL 73

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
                             ++    W + + +  +     +   T   +   R        
Sbjct: 74  KN----------------AIKSDEWLSSIYDVGIDYIRNNNNGTEFLFKGLRHGMGSVKS 117

Query: 189 NTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-PLED 247
                    +EA   P+     +L      +    W++  N R+        F     +D
Sbjct: 118 TAQIDLTIVEEAEDVPENAWVELLPTIFRTDKAECWVIW-NPRKKGSPVDKRFRQFKPDD 176

Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYG-LDSDVARIEILGQFPQQEVNNFIPHNYIEE-A 305
               +++         G  +        +  ++     LG + +        +  +E+  
Sbjct: 177 AVVVEMNYYDNPFFPKGLEDLRRHDEDTMPPELYAHVWLGAYYEHTEAQVFKNWKVEQVN 236

Query: 306 MSREAIDDLYAPLIMGCDIAGEGGDKTV 333
            +             G D  G   D T 
Sbjct: 237 TNGWEGPYY------GLDF-GFSQDPTA 257


>gi|333006277|gb|EGK25786.1| gp33 TerL [Shigella flexneri K-218]
          Length = 540

 Score = 75.8 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/356 (10%), Positives = 86/356 (24%), Gaps = 24/356 (6%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIKGKPLEHFSQPHRWQL 56
           P      +   + L  +  + E + + K F           WG+   P            
Sbjct: 12  PDYQMVFEWRMERLQRIRQNPEILPALKQFYRTNPAQFIIDWGMTTDPRNIDYGLPVTIP 71

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
             +          +               R +G +     +   L      M I   +  
Sbjct: 72  FLLFPKQEEWIHWIMERWGNRENGITEKSREMGLSWTAIGLACSLCLFNKEMVIGFGSRK 131

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
           E  + ++     + +           ++         +A  +                  
Sbjct: 132 EEYV-DSTGDPKALFWKARKFVETLPVEFRGSWDEKKHAPYMRVEFP---------ETGA 181

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
             +                  DE++     +        T        I  S+   +   
Sbjct: 182 VIKGEAGDNIGRGDRTTLYLVDESAFLQRPLLIDAALSQTTRCR----IDLSSVNGMANP 237

Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
           F    +        +    R     D  ++     +   +  V   E+   +        
Sbjct: 238 FAQKRHGGK--IPVFTFHWRDDPRKDEEWYRRECEKI-DNPVVVAQELDLNYSASAEGVL 294

Query: 297 IPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
           IP  +++ A+              +   D+A EG DK     R G ++E++ +WS 
Sbjct: 295 IPSEWVQAAVDAHIKLGIQPTGKRLGAMDVADEGRDKNSFSTRHGFLLENVREWSG 350


>gi|22855048|ref|NP_690654.1| hypothetical protein SPP1p003 [Bacillus phage SPP1]
 gi|1729903|sp|P54308|TERL_BPSPP RecName: Full=Large terminase protein; AltName: Full=DNA-packaging
           protein G2P; AltName: Full=Terminase large subunit
 gi|15466|emb|CAA39537.1| terminase [Bacillus phage SPP1]
 gi|2764840|emb|CAA66573.1| unnamed protein product [Bacillus phage SPP1]
          Length = 422

 Score = 75.8 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 80/284 (28%), Gaps = 27/284 (9%)

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124
                         K  +  GRG  K+T  A  ++ L+   P ++ + I      ++ ++
Sbjct: 14  FLEVWRTVKAAQHLKYVLKGGRGSAKSTHIAMWIILLMMMMP-ITFLVIRRVYNTVEQSV 72

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
           + ++ + + ML   H +++    L  + +                 I     S+      
Sbjct: 73  FEQLKEAIDMLEVGHLWKVSKSPLRLT-YIPRGNSIIFRGGDDVQKIKSIKASKFPVAGM 131

Query: 185 VGPHNTHGMAVFNDE-ASGTPDIINKSILGFFTE----LNPNRFWIMTSNTR-RLNGWFY 238
                      + +E A    +     I                +  + N   R   W  
Sbjct: 132 -----------WIEELAEFKTEEEVSVIEKSVLRAELPPGCRYIFFYSYNPPKRKQSWVN 180

Query: 239 DIFNIPLEDWKRY--QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
            +FN        +           +   F E        +    R E LG+      +  
Sbjct: 181 KVFNSSFLPANTFVDHSTYLQNPFLSKAFIEEAEEVKRRNELKYRHEYLGE---ALGSGV 237

Query: 297 IPHN--YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
           +P     IEE +  +A    +  +  G D  G G D    V   
Sbjct: 238 VPFENLQIEEGIITDAEVARFDNIRQGLDF-GYGPDPLAFVRWH 280


>gi|268601026|ref|ZP_06135193.1| phage terminase [Neisseria gonorrhoeae PID18]
 gi|268585157|gb|EEZ49833.1| phage terminase [Neisseria gonorrhoeae PID18]
          Length = 417

 Score = 75.8 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/279 (11%), Positives = 74/279 (26%), Gaps = 26/279 (9%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
             P  +K       G  K+   A  +L L + RP + I+C    +  +++++   +   +
Sbjct: 11  FKPCRYKVMYGGRGGG-KSHGAASALLALGAQRP-LRILCAREIQKSMRDSVHRLLKDKV 68

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
           + L   H++E+                  +   +    +     S               
Sbjct: 69  AQLGLGHFYEITD--------------FEIRGANGTLFVFSGLQS---HTVDSIKSFEGI 111

Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRY 251
             V+ +E  G        +     +     +  +  N        Y  F  +P ED    
Sbjct: 112 DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITL--NPDMETDETYRRFIAMPSEDTWLC 169

Query: 252 QIDTRTVEGIDSGFHEGI-ISRYGLDSDVARIEILGQFPQQEVNNFIP---HNYIEEAMS 307
           +I+ R         +     ++  +  +       G+               +       
Sbjct: 170 EINWRDNPWFPEALNRERLKAQRSMSKEDYGHIWEGRPRMVSEGAVYRHEIQDAFHSGRV 229

Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
                D   P+    D+         +V R    +  I 
Sbjct: 230 TLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLTSVRIIG 268


>gi|332088044|gb|EGI93169.1| gp33 TerL [Shigella boydii 5216-82]
          Length = 539

 Score = 75.8 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/365 (12%), Positives = 95/365 (26%), Gaps = 40/365 (10%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIK--------GKPLEHF 48
           P      +   + L  +  + E + + K F           WG+         G P+   
Sbjct: 12  PDYQMVFEWRMERLQRIRQNPEILPALKQFYRTNPAQFIIDWGMTTDPRNIDYGLPVTIP 71

Query: 49  SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108
                 Q E++  +     +  N              R +G +     +   L      M
Sbjct: 72  FLLFPKQEEWIHWIMERWSNRENGITDKS--------REMGLSWTAIGLACSLCLFNKEM 123

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            I   +  E  + ++     + +           ++         +A  +          
Sbjct: 124 VIGFGSRKEEYV-DSTGDPKALFWKARKFVETLPVEFRGSWSEKKHAPYMRVEFP----- 177

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
                     +                F DEA+     +        T        I  S
Sbjct: 178 ----ETGAVIKGEAGDNIGRGDRTTLYFVDEAAFLQRPLLIDAALSQTTRCR----IDLS 229

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
           +   +N  F    +        +    R+    D  ++     +   +  +   E+   +
Sbjct: 230 SVNGMNNPFAQKRH--SGKIPVFTFHWRSDPRKDDEWYHKECEKI-DNPVIVAQELDLNY 286

Query: 289 PQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
                   IP  +++ A+              +   D+A EG DK     R G ++  + 
Sbjct: 287 QASAEGILIPSEWVQAAVDAHIRLGIQPGGQRLGAMDVADEGRDKNACSLRYGILLNDVQ 346

Query: 347 DWSAK 351
           +WS K
Sbjct: 347 EWSGK 351


>gi|217979215|ref|YP_002363362.1| hypothetical protein Msil_3091 [Methylocella silvestris BL2]
 gi|217504591|gb|ACK52000.1| conserved hypothetical protein [Methylocella silvestris BL2]
          Length = 490

 Score = 75.8 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 68/296 (22%), Gaps = 50/296 (16%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM-------LWLISTRPGMS--II 111
            +   C               +  GR  GKT   A +         W     PG    ++
Sbjct: 44  ELFRQCTGRAEAQGAAFGFLWLVIGRRGGKTFAMALLACFLGLFRDWTSRLAPGERAVVL 103

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +A    Q K  L   +S  L                       E              I
Sbjct: 104 LVAADREQAK-ILRRYISGILEAP--------------MLAKMVEAETADTIELKGRVVI 148

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--------PDIINKSILGFFTELNPNRF 223
              T S      +             DE +             +  +I         +  
Sbjct: 149 EVATCS------YRTVRGRSVCVALLDEVAFWRRDDSVSPDTEVFVAIRASMATFGDDAM 202

Query: 224 WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT-----RTVEGIDSGFHEGIISRYGLDSD 278
            ++ S+    +G  +  +           +            +   F +  I     D  
Sbjct: 203 MVVASSPYSKSGLLWTNYRKYFGKPDAQNLVWQAATRTMNPSVPQSFIDAEIE---RDPV 259

Query: 279 VARIEILGQFPQQEVNNFIPHNYIEEAM---SREAIDDLYAPLIMGCDIAGEGGDK 331
            A  E   QF + +V  F+    IE  +    RE         +   D +G   D 
Sbjct: 260 SAAAEYGAQF-RTDVAAFVDREAIEACVASGRRELPPAPGVRYVAFADPSGGSSDS 314


>gi|323186590|gb|EFZ71927.1| gp33 TerL protein [Escherichia coli 1357]
          Length = 503

 Score = 75.8 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/365 (12%), Positives = 94/365 (25%), Gaps = 40/365 (10%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIK--------GKPLEHF 48
           P      +   + L  +  + E +   K F           WG+         G P+   
Sbjct: 12  PDYQMVFEWRMERLQRIRQNPEILPVLKQFYRTNPAQFIIDWGMTTDPRNIDYGLPVTIP 71

Query: 49  SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108
                 Q E++  +     +  N              R +G +     +   L      M
Sbjct: 72  FLLFPKQEEWIHWIMERWSNRENGITEKS--------REMGLSWTAIGLACSLCLFNKEM 123

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            I   +  E  + ++     + +           ++         +A  +          
Sbjct: 124 VIGFGSRKEEYV-DSTGDPKALFWKARKFVETLPVEFRGSWSEKKHAPYMRVEFP----- 177

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
                     +                F DEA+     +        T        I  S
Sbjct: 178 ----ETGAVIKGEAGDNIGRGDRTTLYFVDEAAFLQRPLLIDAALSQTTRCR----IDLS 229

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
           +   +N  F    +        +    R+    D  ++     +   +  +   E+   +
Sbjct: 230 SVNGMNNPFAQKRH--SGKIPVFTFHWRSDPRKDDEWYHKECEKI-DNPVIVAQELDLNY 286

Query: 289 PQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
                   IP  +++ A+              +   D+A EG DK     R G ++  + 
Sbjct: 287 QASAEGILIPSEWVQAAVDAHIRLGIQPGGQRLGAMDVADEGRDKNACSLRYGILLNDVQ 346

Query: 347 DWSAK 351
           +WS K
Sbjct: 347 EWSGK 351


>gi|328472888|gb|EGF43736.1| terminase large subunit [Vibrio parahaemolyticus 10329]
          Length = 431

 Score = 75.4 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 68/284 (23%), Gaps = 42/284 (14%)

Query: 80  CAISAGRGIGKTTLNAWMMLW--LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
             +  GRG GKT      ML             + +   +T +++++ + VS  +     
Sbjct: 27  IVLKGGRGSGKTFAIICYMLEQSFEEKYRDSLFLVLREIQTSIEDSVHSVVSDLIKQAGL 86

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
             +F++    +       E     +              S  + +   G H      VF 
Sbjct: 87  EQYFKITHSKIINKLTNVEFAFTGLRSTGG-------KTSFSQVNKIKGKH--KVRMVFM 137

Query: 198 DEASGTPDIINKSILGFF--------TELNPNRFWIMTS---------------NTRRLN 234
           DEA          +            T        +                  N     
Sbjct: 138 DEAQDASQDSLDVLFPTVNRSGNVSFTSEYERLLRLAFGAEEVDLTEARFFFAMNPNFAE 197

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGI--DSGFHEGIISRYGLDSDVARIEILGQFPQQE 292
                      +      I+   +     D+   E      G          LG+   + 
Sbjct: 198 DPVITKVRSFGDRAVIKHINIFDLPKRYQDTQLLEQAERERGE--VTWPHVWLGEPSPKI 255

Query: 293 VNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
                     E  +     D+     +   D + +G D T + F
Sbjct: 256 SGYPFA----ETPVVTAEEDEELLQCVAFLDPSYKGDDFTALSF 295


>gi|282878109|ref|ZP_06286910.1| phage terminase, large subunit, PBSX family [Prevotella buccalis
           ATCC 35310]
 gi|281299767|gb|EFA92135.1| phage terminase, large subunit, PBSX family [Prevotella buccalis
           ATCC 35310]
          Length = 423

 Score = 75.4 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/295 (10%), Positives = 75/295 (25%), Gaps = 42/295 (14%)

Query: 62  VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM--LWLISTRPGM---SIICIANS 116
           +  H       +N   F   I+ GR  GK+   +  +  L    T        I+    +
Sbjct: 2   IKTHKVYYPIYANKDKFIILITGGRASGKSHFVSSFLERLTFEMTPVDKIVHQILYTRYT 61

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
                 ++  E  +   +   + +F      +      + ++ + +            T 
Sbjct: 62  MVSANISIIPEFLEKAELDGTQKYFRSTRSDVTNRMTGSTVMFRGLK-----------TS 110

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
           S  +       H         DEA     +   ++I+    +        +  N    N 
Sbjct: 111 SGNQTAKLKSIHG--ITTFVVDEAEEWVSEKEFETIMLSIRQKGIQNRIFIIMNPTDNNH 168

Query: 236 WFYDIFNIPLED---WKRYQIDTRTVEGI--------------DSGFHEGIISRYGLDSD 278
           W Y  F         +    +   T   +                 F   +      + +
Sbjct: 169 WVYKRFIENTHKEVMYDGIPVQISTHPNVLHIHTTYLDNLENLSQEFINEVEDMKANNPE 228

Query: 279 VARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTV 333
                ++G++          H  + +   +         + +G D      D + 
Sbjct: 229 KYAHTVMGRWADVAEGAVFKHIGVVKEFPKWCK-----KVAIGLDFGYT-NDVSA 277


>gi|16127022|ref|NP_421586.1| hypothetical protein CC_2790 [Caulobacter crescentus CB15]
 gi|221235816|ref|YP_002518253.1| phage DNA packaging protein [Caulobacter crescentus NA1000]
 gi|13424390|gb|AAK24754.1| conserved hypothetical protein [Caulobacter crescentus CB15]
 gi|220964989|gb|ACL96345.1| phage DNA packaging protein [Caulobacter crescentus NA1000]
          Length = 567

 Score = 75.4 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 79/301 (26%), Gaps = 28/301 (9%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           +P   Q     A+       + +         +  GRG GKT   A  + W     P   
Sbjct: 165 EPEDQQRLLSAALAEPLIHQLASPFSPWSTWLMLGGRGAGKTFAGARWITWNALAYPSQ- 223

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
              I  +   ++  +    S   +M    +    ++                        
Sbjct: 224 -ALIGPTLHDVREVMIEGPSGLKAMGGPAYRPRWEASRRRL------------------V 264

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                       +           A + DE    P       +  F         ++ + 
Sbjct: 265 WPNGAVAYAFSAEDPESLRGPQFHAAWADEFCAWPKPAETLAMLRFGLRLGEDPRLVVTT 324

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
           T + +     +   P          +     +   F   + S YG    +A  E+ G   
Sbjct: 325 TPKPHRALKTLMAEP-GVALTRAGTSANAGNLAPAFLRTLASLYGGT-RLAAQELDGVVV 382

Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD-IAGEGGDKTVVVF--RRGNIIEHIF 346
           + +   F   +      +R A  D    +++  D  A   GD   +V   RR +    + 
Sbjct: 383 ETDGGLFRAEDLARCRAARPARLD---RVVVAVDPPATATGDACGIVVVGRRDDRAFVLA 439

Query: 347 D 347
           D
Sbjct: 440 D 440


>gi|332759085|gb|EGJ89395.1| gp33 TerL [Shigella flexneri 4343-70]
          Length = 519

 Score = 75.4 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 69/267 (25%), Gaps = 19/267 (7%)

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
           R +G +     +   L      M I   +  E  + ++     + +           ++ 
Sbjct: 80  REMGLSWTAIGLACSLCLFNKEMVIGFGSRKEEYV-DSTGDPKALFWKARKFVETLPVEF 138

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
                   +A  +                    +                  DE++    
Sbjct: 139 RGSWDEKKHAPYMRVEFP---------ETGAVIKGEAGDNIGRGDRTTLYLVDESAFLQR 189

Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265
            +        T        I  S+   +   F    +        +    R     D  +
Sbjct: 190 PLLIDAALSQTTRCR----IDLSSVNGMANPFAQKRHGGK--IPVFTFHWRDDPRKDEEW 243

Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCD 323
           +     +   +  V   E+   +        IP  +++ A+              +   D
Sbjct: 244 YRRECEKI-DNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDAHIKLGIQPTGKRLGAMD 302

Query: 324 IAGEGGDKTVVVFRRGNIIEHIFDWSA 350
           +A EG DK     R G ++E++ +WS 
Sbjct: 303 VADEGRDKNSFSTRHGFLLENVREWSG 329


>gi|194098237|ref|YP_002001293.1| putative phage associated protein [Neisseria gonorrhoeae NCCP11945]
 gi|240125445|ref|ZP_04738331.1| putative phage associated protein [Neisseria gonorrhoeae SK-92-679]
 gi|268684040|ref|ZP_06150902.1| phage terminase [Neisseria gonorrhoeae SK-92-679]
 gi|193933527|gb|ACF29351.1| putative phage associated protein [Neisseria gonorrhoeae NCCP11945]
 gi|268624324|gb|EEZ56724.1| phage terminase [Neisseria gonorrhoeae SK-92-679]
          Length = 424

 Score = 75.4 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/279 (12%), Positives = 76/279 (27%), Gaps = 26/279 (9%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
             P  +K       G  K+   A  +L L + RP + I+C+   +  +++T+   +   +
Sbjct: 18  FKPCRYKVMYGGRGGG-KSHGAASALLALGAQRP-LRILCVREIQKSMRDTVHRLLKDKV 75

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
           + L   H++E+                  +   +    +     S               
Sbjct: 76  AQLGLGHFYEITD--------------FEIRGANGTLFVFSGLQS---HTVDSIKSFEGI 118

Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRY 251
             V+ +E  G        +     +     +  +  N        Y  F  +P ED    
Sbjct: 119 DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITL--NPDMETDETYRRFIAMPSEDTWLC 176

Query: 252 QIDTRTVEGIDSGFHEGI-ISRYGLDSDVARIEILGQFPQQEVNNFIP---HNYIEEAMS 307
           +I+ R         +     ++  ++ +       G+               +       
Sbjct: 177 EINWRDNPWFPEALNRERLKAQRSMNKEDYGNIWEGRPRMVSEGAVYRHEIQDAFHSGRV 236

Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
                D   P+    D+         +V R    +  I 
Sbjct: 237 TLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLTSVRIIG 275


>gi|169344384|ref|ZP_02865357.1| phage terminase, large subunit, pbsx family [Clostridium
           perfringens C str. JGS1495]
 gi|169297509|gb|EDS79616.1| phage terminase, large subunit, pbsx family [Clostridium
           perfringens C str. JGS1495]
          Length = 415

 Score = 75.4 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 84/303 (27%), Gaps = 32/303 (10%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           +++  + V    +     +    F      G G GK+      M++     PG   + + 
Sbjct: 3   RIKINKRVFNEVYLPQLQNYEKRFNVFYGGG-GSGKSHFVVQKMIYKYLKYPGRKCLVVR 61

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
              + LK +++A     LS        ++    L        L       D +       
Sbjct: 62  KVNSTLKESIFALFRSVLSDWQIYDECKINKTDLTIELPNKSLFIFKGIDDPEKIKSIAG 121

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
                               +  +E +   +     +       NP     +  N    +
Sbjct: 122 IDD-----------------IVVEECTEIDEFDFDQLNLRLRSKNPYNQIHVMFNPVSKS 164

Query: 235 GWFYDIF---NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
            W Y  +       +D        +  + +   + + ++     +    RI  LG+F   
Sbjct: 165 NWVYKRWFKNGYDTKDTIVLHTTYKNNKFLPKDYIDSLLKLEKDNPVYFRIYALGEFATL 224

Query: 292 EVNNFIPHNYIEEAMSRE--AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS 349
             +  I  N+ EE+   +    ++     I   D      D T        +   I   +
Sbjct: 225 --DKLIYTNWKEESFDYKEILKNNRNTKAIFSLDFGYT-NDPTAF------VCSIIDKIN 275

Query: 350 AKL 352
            KL
Sbjct: 276 KKL 278


>gi|77463023|ref|YP_352527.1| putative large terminase [Rhodobacter sphaeroides 2.4.1]
 gi|126461897|ref|YP_001043011.1| hypothetical protein Rsph17029_1129 [Rhodobacter sphaeroides ATCC
           17029]
 gi|77387441|gb|ABA78626.1| Putative large terminase [Rhodobacter sphaeroides 2.4.1]
 gi|126103561|gb|ABN76239.1| protein of unknown function DUF264 [Rhodobacter sphaeroides ATCC
           17029]
          Length = 414

 Score = 75.4 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/288 (12%), Positives = 75/288 (26%), Gaps = 35/288 (12%)

Query: 81  AISAGRGIGKTTLNAWMMLWLIS-TRPG-----MSIICIANSETQLKNTLWAEVSKWLSM 134
            +  GRG GKT   A  +   +   RPG       +  +  +  Q +  +    S  L+ 
Sbjct: 21  VVMGGRGAGKTRAGAEWVRAEVEGARPGDPGRSRHVALVGETIDQAREVMVFGESGILAC 80

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
            P     E ++                                                A
Sbjct: 81  SPPDRRPEWEAGRRRL------------------VWPNGAVAQIFSAHDPESLRGPQFDA 122

Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
            + DE +     +     +       +  R  ++T+  R +                 + 
Sbjct: 123 AWADELAKWGRAEEAWDMLQFSLRLGDQPR-QVVTTTPRNV--PVLRHILDNPSTVMTHA 179

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
                   +   F   + +RY     + R E+ G   +           IE   SR    
Sbjct: 180 PTEANRAYLARSFLAEVHARYDGT-RLGRQELEGLLLEDVEGALWTTARIEA--SRLEEP 236

Query: 313 DLYAPLIMGCDIAGEG---GDKTVVVFRRGNIIEHIFDWSAKLIQETN 357
                +++  D    G    D+  ++           DW A ++++ +
Sbjct: 237 GPLDRIVVAVDPPVTGTEASDECGILVVGARTAGPPQDWRAVVLEDAS 284


>gi|298290710|ref|YP_003692649.1| hypothetical protein Snov_0699 [Starkeya novella DSM 506]
 gi|296927221|gb|ADH88030.1| protein of unknown function DUF264 [Starkeya novella DSM 506]
          Length = 428

 Score = 75.4 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/297 (15%), Positives = 79/297 (26%), Gaps = 37/297 (12%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTR---PGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  GRG GKT   A  +  L   R   P   I  +A S   L+  +   VS  L++ P  
Sbjct: 42  VLGGRGAGKTRAGAEWVRALAFGRAGPPAGRIALVAESLGDLREVMVEGVSGLLAVHPRG 101

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                +                                     D           A + D
Sbjct: 102 ERPTWEPTRKRLE------------------WPNGAVAQGFSADDPESLRGPQFDAAWCD 143

Query: 199 EASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256
           E +          ++          R  + T+                            
Sbjct: 144 ELAKWRYAQAAFDNLQFGLRLGARPRQMVTTT---PRPTTLLRALLADPRTAVTRMGTAE 200

Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DL 314
               +   F E ++ RY     + R E+ G+  +   +       IE      A +    
Sbjct: 201 NAAHLAPHFLETVVGRYAGT-RLGRQELDGELIEDRPDALWSRALIEAGREAAAPEMVRQ 259

Query: 315 YAPLIMGCDI---AGEGGDKTVVVF----RRGNIIEHIFDWSAKLIQETNQEGCPVG 364
              +++  D    + +  D   +V     R G  +  + D SA+ +  T   G  VG
Sbjct: 260 MERIVVAVDPPASSRKHADACGLVAAGIDRDGL-VHVLADESAQGLTPTGWGGRAVG 315


>gi|221638881|ref|YP_002525143.1| hypothetical protein RSKD131_0782 [Rhodobacter sphaeroides KD131]
 gi|221159662|gb|ACM00642.1| Hypothetical Protein RSKD131_0782 [Rhodobacter sphaeroides KD131]
          Length = 432

 Score = 75.0 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/288 (12%), Positives = 75/288 (26%), Gaps = 35/288 (12%)

Query: 81  AISAGRGIGKTTLNAWMMLWLIS-TRPG-----MSIICIANSETQLKNTLWAEVSKWLSM 134
            +  GRG GKT   A  +   +   RPG       +  +  +  Q +  +    S  L+ 
Sbjct: 39  VVMGGRGAGKTRAGAEWVRAEVEGARPGDPGRSRHVALVGETIDQAREVMVFGESGILAC 98

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
            P     E ++                                                A
Sbjct: 99  SPPDRRPEWEAGRKRL------------------VWPNGAVAQIFSAHDPESLRGPQFDA 140

Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
            + DE +     +     +       +  R  ++T+  R +                 + 
Sbjct: 141 AWADELAKWGRAEEAWDMLQFSLRLGDQPR-QVVTTTPRNV--PVLRHILDNPSTVVTHA 197

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
                   +   F   + +RY     + R E+ G   +           IE   SR    
Sbjct: 198 PTEANRAYLARSFLAEVHARYDGT-RLGRQELEGLLLEDVEGALWTTARIEA--SRLEEP 254

Query: 313 DLYAPLIMGCDIAGEG---GDKTVVVFRRGNIIEHIFDWSAKLIQETN 357
                +++  D    G    D+  ++           DW A ++++ +
Sbjct: 255 GPLDRIVVAVDPPVTGTEASDECGILVVGARTAGPPQDWRAVVLEDAS 302


>gi|94971392|ref|YP_593440.1| hypothetical protein Acid345_4366 [Candidatus Koribacter versatilis
           Ellin345]
 gi|94553442|gb|ABF43366.1| hypothetical protein Acid345_4366 [Candidatus Koribacter versatilis
           Ellin345]
          Length = 496

 Score = 75.0 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/316 (12%), Positives = 82/316 (25%), Gaps = 57/316 (18%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
            +  +   R +G TT  A         RPG   + +A+ +      ++  V +++  LP 
Sbjct: 76  RRNIVLKARQLGITTYVASRFFLSTIMRPGTVTVQVAH-DQTAAEEIFRIVHRFVENLPE 134

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
                        +   + L  + +            + ++      +  HN H      
Sbjct: 135 EM--------RKGALTTSRLNTRQIVFPKLDSAYLVESAADVNAGRGLTIHNLH-----C 181

Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP------LEDWKRY 251
            E +  P    + +      +  +   ++ S      G FYD +            +  +
Sbjct: 182 SEVARWPGDAAEVLASLRAAVPKHGEIVLESTPNGAGGCFYDEWQHAEEKGYTQHFFPWW 241

Query: 252 QIDTRTVEGIDSGFHEGIISRYG-----LDSDVARIEILGQF-----------PQQ---- 291
              + T+            S  G      +    R E+   F           P++    
Sbjct: 242 WEKSYTIGHRAEELSPEEESLVGRYGLSREQIAFRRELQFNFGKLARQEYAETPEECFLA 301

Query: 292 EVNNFIPHNYIEE---------------AMSREAIDDLYAPLIMGCDIAGEG--GDKTVV 334
                   + IE+                +            ++G D AG G  GD    
Sbjct: 302 SGECVFEVDVIEKRLAELRGPVETRENGRIETYYPPVRGREYVIGVDPAGGGSEGDYAAA 361

Query: 335 VFRRGNIIEHIFDWSA 350
                +      +   
Sbjct: 362 QVIERSTGLQCAELRG 377


>gi|268594527|ref|ZP_06128694.1| phage terminase [Neisseria gonorrhoeae 35/02]
 gi|268547916|gb|EEZ43334.1| phage terminase [Neisseria gonorrhoeae 35/02]
          Length = 426

 Score = 75.0 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/279 (12%), Positives = 76/279 (27%), Gaps = 26/279 (9%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
             P  +K       G  K+   A  +L L + RP + I+C+   +  +++T+   +   +
Sbjct: 20  FKPCRYKVMYGGRGGG-KSHGAASALLALGAQRP-LRILCVREIQKSMRDTVHRLLKDKV 77

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
           + L   H++E+                  +   +    +     S               
Sbjct: 78  AQLGLGHFYEITD--------------FEIRGANGTLFVFSGLQS---HTVDSIKSFEGI 120

Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRY 251
             V+ +E  G        +     +     +  +  N        Y  F  +P ED    
Sbjct: 121 DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITL--NPDMETDETYRRFIAMPSEDTWLC 178

Query: 252 QIDTRTVEGIDSGFHEGI-ISRYGLDSDVARIEILGQFPQQEVNNFIP---HNYIEEAMS 307
           +I+ R         +     ++  ++ +       G+               +       
Sbjct: 179 EINWRDNPWFPEALNRERLKAQRSMNKEDYGNIWEGRPRMVSEGAVYRHEIQDAFHSGRV 238

Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
                D   P+    D+         +V R    +  I 
Sbjct: 239 TLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLMSVRIIG 277


>gi|224984406|ref|YP_002641809.1| phage terminase, large subunit, pbsx family [Borrelia valaisiana
           VS116]
 gi|224497005|gb|ACN52640.1| phage terminase, large subunit, pbsx family [Borrelia valaisiana
           VS116]
          Length = 450

 Score = 75.0 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 78/288 (27%), Gaps = 43/288 (14%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMS 109
           Q E +  ++ H             K   S G   GKT L +++++  +           +
Sbjct: 49  QKEVLFDIESH----------DYSKVIFSGGIASGKTFLASYLLIKKLIENKSLYERDTN 98

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
              I NS   L      ++ K    L    + + +S          EL            
Sbjct: 99  NFIIGNSIGLLMTNTIKQIEKICGFLGI-DYQKKKSGESFCKIAGLELN----------- 146

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                 Y     D F      +   ++ +EA+         ++    +       I  +N
Sbjct: 147 -----IYGGRNRDAFSKIRGGNSAIIYVNEATVIHKETLLEVIKRLRKG--KSIIIFDTN 199

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
                 +F   +    + +K Y   T       + F E     Y          + G++ 
Sbjct: 200 PESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIETQEKLYKHFPAYKARVLYGEWI 259

Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
               +                 D  +   IM  D A   GGD T +  
Sbjct: 260 L-NESALFNEMIFN-------QDYEFKSPIMYIDPAFSVGGDNTAICV 299


>gi|26989017|ref|NP_744442.1| DNA maturase B [Pseudomonas putida KT2440]
 gi|24983840|gb|AAN67906.1|AE016423_1 DNA maturase B [Pseudomonas putida KT2440]
          Length = 562

 Score = 75.0 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/375 (11%), Positives = 81/375 (21%), Gaps = 84/375 (22%)

Query: 27  SFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR 86
            F+ F+     W     P     +P   Q +    +                +C I A R
Sbjct: 13  DFRKFIYLV--WKHLNLP-----EPTPVQYDIARYLQHGPR-----------RCVIEAFR 54

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G+GK+ + A  + WL+   P + I+ ++ S  +              M   +H       
Sbjct: 55  GVGKSWVTAAFVCWLLWRNPQLRILVVSASSARADAFSSFVKRLIHEMPLLQHLKPGPDQ 114

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSE----------ERPDTFVGPHNTHGMAVF 196
                 +             K   I  +              E P+          ++  
Sbjct: 115 IDKMVAFEVAPALPDQSPSVKSVGIMGQITGSRADIIIADDIEIPNNSATQMMRDKLSEA 174

Query: 197 NDEASGT-------------PDIINKSILGFFTELNPNR-FWIMTSNTRRLNGWFYD--- 239
             E                       S+     E       W             Y    
Sbjct: 175 VKEFDAILKPLQSARIIYLGTPQCEMSLYNRLPERGYEIRVWPALY-PTLQKVPHYKGSL 233

Query: 240 --IFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG------QFPQQ 291
                  +E               D       ++ YG      +  +        +FP +
Sbjct: 234 APFITQAMEADPTLSGKPTDPRRFDEKDLMERMASYGRAGFALQFMLDTSLSDGDKFPLK 293

Query: 292 EVNNFI------------------------------PHNYIEEAMSREAIDDLYAPLIMG 321
             +  +                                +     M   +    Y   +M 
Sbjct: 294 VQDLMVMNLNPIMAHVKLAWAASPELCINDMPTVALTGDRFYRPMWHASEMSEYTGCVMA 353

Query: 322 CDIAGEGGDKTVVVF 336
            D +G G D+T    
Sbjct: 354 IDPSGRGQDETGYAV 368


>gi|239998675|ref|ZP_04718599.1| putative phage associated protein [Neisseria gonorrhoeae 35/02]
 gi|317163958|gb|ADV07499.1| putative phage associated protein [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 424

 Score = 75.0 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/279 (12%), Positives = 76/279 (27%), Gaps = 26/279 (9%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
             P  +K       G  K+   A  +L L + RP + I+C+   +  +++T+   +   +
Sbjct: 18  FKPCRYKVMYGGRGGG-KSHGAASALLALGAQRP-LRILCVREIQKSMRDTVHRLLKDKV 75

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
           + L   H++E+                  +   +    +     S               
Sbjct: 76  AQLGLGHFYEITD--------------FEIRGANGTLFVFSGLQS---HTVDSIKSFEGI 118

Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRY 251
             V+ +E  G        +     +     +  +  N        Y  F  +P ED    
Sbjct: 119 DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITL--NPDMETDETYRRFIAMPSEDTWLC 176

Query: 252 QIDTRTVEGIDSGFHEGI-ISRYGLDSDVARIEILGQFPQQEVNNFIP---HNYIEEAMS 307
           +I+ R         +     ++  ++ +       G+               +       
Sbjct: 177 EINWRDNPWFPEALNRERLKAQRSMNKEDYGNIWEGRPRMVSEGAVYRHEIQDAFHSGRV 236

Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
                D   P+    D+         +V R    +  I 
Sbjct: 237 TLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLMSVRIIG 275


>gi|293399332|ref|ZP_06643497.1| PBSX family phage terminase, large subunit [Neisseria gonorrhoeae
           F62]
 gi|291610746|gb|EFF39856.1| PBSX family phage terminase, large subunit [Neisseria gonorrhoeae
           F62]
          Length = 426

 Score = 74.6 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/279 (11%), Positives = 75/279 (26%), Gaps = 26/279 (9%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
             P  +K       G  K+   A  +L L + RP + I+C    +  +++++   +   +
Sbjct: 20  FKPCRYKVMYGGRGGG-KSHGAASALLALGAQRP-LRILCAREIQKSMRDSVHRLLKDKV 77

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
           + L   H++E+                  +   +    +     S               
Sbjct: 78  AQLGLGHFYEITD--------------FEIRGANGTLFVFSGLQS---HTVDSIKSFEGI 120

Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRY 251
             V+ +E  G        +     +     +  +  N        Y  F  +P ED    
Sbjct: 121 DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITL--NPDMETDETYRRFIAMPSEDTWLC 178

Query: 252 QIDTRTVEGIDSGFHEGI-ISRYGLDSDVARIEILGQFPQQEVNNFIP---HNYIEEAMS 307
           +I+ R         +     ++  ++ +       G+               +       
Sbjct: 179 EINWRDNPWFPEALNRERLKAQRSMNKEDYGNIWEGRPRMVSEGAVYRHEIQDAFHSGRV 238

Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
                D   P+    D+         +V R    +  I 
Sbjct: 239 TLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLTSVRIIG 277


>gi|291044162|ref|ZP_06569878.1| phage terminase [Neisseria gonorrhoeae DGI2]
 gi|291012625|gb|EFE04614.1| phage terminase [Neisseria gonorrhoeae DGI2]
          Length = 426

 Score = 74.6 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/279 (11%), Positives = 75/279 (26%), Gaps = 26/279 (9%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
             P  +K       G  K+   A  +L L + RP + I+C    +  +++++   +   +
Sbjct: 20  FKPCRYKVMYGGRGGG-KSHGAASALLALGAQRP-LRILCAREIQKSMRDSVHRLLKDKV 77

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
           + L   H++E+                  +   +    +     S               
Sbjct: 78  AQLGLGHFYEITD--------------FEIRGANGTLFVFSGLQS---HTVDSIKSFEGI 120

Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRY 251
             V+ +E  G        +     +     +  +  N        Y  F  +P ED    
Sbjct: 121 DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITL--NPDMETDETYRRFIAMPSEDTWLC 178

Query: 252 QIDTRTVEGIDSGFHEGI-ISRYGLDSDVARIEILGQFPQQEVNNFIP---HNYIEEAMS 307
           +I+ R         +     ++  ++ +       G+               +       
Sbjct: 179 EINWRDNPWFPEALNRERLKAQRSMNKEDYGNIWEGRPRMVSEGAVYRHEIQDAFHSGRV 238

Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
                D   P+    D+         +V R    +  I 
Sbjct: 239 TLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLTSVRIIG 277


>gi|240014419|ref|ZP_04721332.1| putative phage associated protein [Neisseria gonorrhoeae DGI18]
 gi|240016852|ref|ZP_04723392.1| putative phage associated protein [Neisseria gonorrhoeae FA6140]
 gi|240120865|ref|ZP_04733827.1| putative phage associated protein [Neisseria gonorrhoeae PID24-1]
 gi|254493400|ref|ZP_05106571.1| phage terminase [Neisseria gonorrhoeae 1291]
 gi|226512440|gb|EEH61785.1| phage terminase [Neisseria gonorrhoeae 1291]
          Length = 424

 Score = 74.6 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/279 (11%), Positives = 75/279 (26%), Gaps = 26/279 (9%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
             P  +K       G  K+   A  +L L + RP + I+C    +  +++++   +   +
Sbjct: 18  FKPCRYKVMYGGRGGG-KSHGAASALLALGAQRP-LRILCAREIQKSMRDSVHRLLKDKV 75

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
           + L   H++E+                  +   +    +     S               
Sbjct: 76  AQLGLGHFYEITD--------------FEIRGANGTLFVFSGLQS---HTVDSIKSFEGI 118

Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRY 251
             V+ +E  G        +     +     +  +  N        Y  F  +P ED    
Sbjct: 119 DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITL--NPDMETDETYRRFIAMPSEDTWLC 176

Query: 252 QIDTRTVEGIDSGFHEGI-ISRYGLDSDVARIEILGQFPQQEVNNFIP---HNYIEEAMS 307
           +I+ R         +     ++  ++ +       G+               +       
Sbjct: 177 EINWRDNPWFPEALNRERLKAQRSMNKEDYGNIWEGRPRMVSEGAVYRHEIQDAFHSGRV 236

Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
                D   P+    D+         +V R    +  I 
Sbjct: 237 TLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLTSVRIIG 275


>gi|59801465|ref|YP_208177.1| putative phage associated protein [Neisseria gonorrhoeae FA 1090]
 gi|260440843|ref|ZP_05794659.1| putative phage associated protein [Neisseria gonorrhoeae DGI2]
 gi|59718360|gb|AAW89765.1| hypothetical protein, putative phage associated protein [Neisseria
           gonorrhoeae FA 1090]
          Length = 424

 Score = 74.6 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/279 (11%), Positives = 75/279 (26%), Gaps = 26/279 (9%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
             P  +K       G  K+   A  +L L + RP + I+C    +  +++++   +   +
Sbjct: 18  FKPCRYKVMYGGRGGG-KSHGAASALLALGAQRP-LRILCAREIQKSMRDSVHRLLKDKV 75

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
           + L   H++E+                  +   +    +     S               
Sbjct: 76  AQLGLGHFYEITD--------------FEIRGANGTLFVFSGLQS---HTVDSIKSFEGI 118

Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRY 251
             V+ +E  G        +     +     +  +  N        Y  F  +P ED    
Sbjct: 119 DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITL--NPDMETDETYRRFIAMPSEDTWLC 176

Query: 252 QIDTRTVEGIDSGFHEGI-ISRYGLDSDVARIEILGQFPQQEVNNFIP---HNYIEEAMS 307
           +I+ R         +     ++  ++ +       G+               +       
Sbjct: 177 EINWRDNPWFPEALNRERLKAQRSMNKEDYGNIWEGRPRMVSEGAVYRHEIQDAFHSGRV 236

Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
                D   P+    D+         +V R    +  I 
Sbjct: 237 TLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLTSVRIIG 275


>gi|17570838|ref|NP_523347.1| DNA packaging protein B [Enterobacteria phage T3]
 gi|17384322|emb|CAC86310.1| DNA packaging protein B [Enterobacteria phage T3]
          Length = 586

 Score = 74.6 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/386 (11%), Positives = 98/386 (25%), Gaps = 86/386 (22%)

Query: 19  LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78
           L+ A+    F  F+  F  W     P+     P + Q++  + +    +           
Sbjct: 10  LVVAQLKGDFVAFL--FVLWKALNLPV-----PTKCQIDMAKVLANGDNK---------- 52

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           K  + A RGIGK+ +    ++W +   P + I+ ++ S+ +        +   + +LP  
Sbjct: 53  KFILQAFRGIGKSFITCAFVVWTLWRDPQLKILIVSASKERADANSIF-IKNIIDLLPFL 111

Query: 139 HWFEMQSLSLHPSGWYAE-LLEQSMGIDSKHYTITCRTY----------SEERPDTFVGP 187
              + +         +     +       K   IT +              E P      
Sbjct: 112 AELKPRPGQRDSVISFDVGPAKPDHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATQ 171

Query: 188 HNTHGMAVFNDEASGT-------------PDIINKSILGFFTE--LNPNRFWIMTSNTRR 232
                +     E +                     ++     +        W       R
Sbjct: 172 GAREKLWTLVQEFAALLKPLPTSRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRSR 231

Query: 233 LNGWFY------DIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-- 284
               +Y       +     + ++  Q         D          YG      +  +  
Sbjct: 232 EEDLYYGERLAPMLREEFNDGFEMLQGQPTDPVRFDMEDLRERELEYGKAGFTLQFMLNP 291

Query: 285 ---LGQ-FPQQEVNNFIPHNYIEEA----------MSREAIDD----------------- 313
                + +P +  +  +     E+A           +R                      
Sbjct: 292 NLSDAEKYPLRLRDAIVCGLDFEKAPMHYQWLPNRQNRNEELPNVGLKGDDIHSYHSCSQ 351

Query: 314 ---LYAPLIMGCDIAGEGGDKTVVVF 336
               Y   I+  D +G G D+T    
Sbjct: 352 NTGQYQQRILVIDPSGRGKDETGYAV 377


>gi|165928475|ref|ZP_02224307.1| P-loop protein [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165919510|gb|EDR36843.1| P-loop protein [Yersinia pestis biovar Orientalis str. F1991016]
          Length = 397

 Score = 74.6 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 73/272 (26%), Gaps = 56/272 (20%)

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           +  V +H        +P  FK  + AGR  GK+ L+   ++   +      +  +A +  
Sbjct: 7   LSLVQLHSGQMQVFQSPHRFKV-VCAGRRWGKSRLSISTIIRAAAKEKKQRVWYVAPTYQ 65

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
             +  LW ++ + L     R   +                   + + +            
Sbjct: 66  MARQILWDDLQEVLPRKWVRKKNDTTMT---------------IVLKNGSEIALKG---- 106

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
                                 +  PD   K +    +        ++     +    F+
Sbjct: 107 ----------------------ADKPDTWYKVLRPTLSS--TRGGALIIGTP-KGFSEFH 141

Query: 239 DIFNIPLE-------DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
            ++ I           WK +Q  T     + S   E   +    D      E L  F   
Sbjct: 142 KLWTIGQNKDLQRKGQWKSWQFVTADSPFVPSAEIEAAKNDM--DPKSFAQEYLASFENM 199

Query: 292 EVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
               + P +       +    +   P+ +G D
Sbjct: 200 SGRVYYPFD--RNVHVKPLQFNPKLPIWVGQD 229


>gi|189427245|ref|YP_001949795.1| gp19 [Salmonella phage phiSG-JL2]
 gi|189085898|gb|ACD75713.1| gp19 [Salmonella phage phiSG-JL2]
          Length = 587

 Score = 74.6 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/386 (11%), Positives = 96/386 (24%), Gaps = 86/386 (22%)

Query: 19  LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78
           L+ A+    F  F+  F  W     P      P + Q++    +    +           
Sbjct: 11  LIIAQLKGDFVAFL--FVLWKALALP-----PPTKCQIDMARCLANGDNK---------- 53

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           K  + A RGIGK+ +    ++W +   P + I+ ++ S+ +        +   + +LP  
Sbjct: 54  KFILQAFRGIGKSFITCAFVVWTLWRDPQLKILIVSASKERADANSIF-IKNIIDLLPFL 112

Query: 139 HWFEMQSLSLHPSGWYAE-LLEQSMGIDSKHYTITCRTY----------SEERPDTFVGP 187
              + +         +     +       K   IT +              E P      
Sbjct: 113 AELKPRPGQRDSVISFDVGPAKPDHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATQ 172

Query: 188 HNTHGMAVFNDEASGT-------------PDIINKSILGFFTE--LNPNRFWIMTSNTRR 232
                +     E +                     ++     +        W       R
Sbjct: 173 GAREKLWTLVQEFAALLKPLPTSRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRSR 232

Query: 233 LNGWFY------DIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-- 284
               +Y       +     + ++  Q         D          YG      +  +  
Sbjct: 233 EEDLYYGDRLAPMLREEFNDGFEMLQGQPTDPVRFDMEDLRERELEYGKAGFTLQFMLNP 292

Query: 285 ---LGQ-FPQQEVNNFIPHNYIEEA----------MSREAIDD----------------- 313
                + +P +  +  +     E+A           +R                      
Sbjct: 293 NLSDAEKYPLRLRDAIVCGLDFEKAPMHYQWLPNRQNRNEELPNVGLKGDDIHSYHSCSQ 352

Query: 314 ---LYAPLIMGCDIAGEGGDKTVVVF 336
               Y   I+  D +G G D+T    
Sbjct: 353 NTGQYQQRILVIDPSGRGKDETGYAV 378


>gi|240112597|ref|ZP_04727087.1| putative phage associated protein [Neisseria gonorrhoeae MS11]
 gi|268598667|ref|ZP_06132834.1| phage terminase [Neisseria gonorrhoeae MS11]
 gi|268582798|gb|EEZ47474.1| phage terminase [Neisseria gonorrhoeae MS11]
          Length = 424

 Score = 74.6 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/279 (11%), Positives = 74/279 (26%), Gaps = 26/279 (9%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
             P  +K       G  K+   A  +L L + RP + I+C    +  +++++   +   +
Sbjct: 18  FKPCRYKVMYGGRGGG-KSHGAASALLALGAQRP-LRILCAREIQKSMRDSVHRLLKDKV 75

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
           + L   H++E+                  +   +    +     S               
Sbjct: 76  AQLGLGHFYEITD--------------FEIRGANGTLFVFSGLQS---HTVDSIKSFEGI 118

Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRY 251
             V+ +E  G        +     +     +  +  N        Y  F  +P ED    
Sbjct: 119 DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITL--NPDMETDETYRRFIAMPSEDTWLC 176

Query: 252 QIDTRTVEGIDSGFHEGI-ISRYGLDSDVARIEILGQFPQQEVNNFIP---HNYIEEAMS 307
           +I+ R         +     ++  +  +       G+               +       
Sbjct: 177 EINWRDNPWFPEALNRERLKAQRSMSKEDYGNIWEGRPRMVSEGAVYRHEIQDAFHSGRV 236

Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
                D   P+    D+         +V R    +  I 
Sbjct: 237 TLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLTSVRIIG 275


>gi|170676278|ref|YP_001742039.1| large terminase subunit [Salmonella phage E1]
 gi|170321588|emb|CAM33107.1| phage large terminase subunit [Salmonella phage Vi II-E1]
          Length = 474

 Score = 74.6 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/271 (11%), Positives = 71/271 (26%), Gaps = 36/271 (13%)

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
           P  FK     GRG  K+      ++     R    + C    +  +K + +AE+   ++ 
Sbjct: 76  PRRFKVFY-GGRGSAKSRSCISYLIEKARFR-NSRVGCFREIQNSIKESSYAELVDEINR 133

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
             H   +      +                 ++   +    +                  
Sbjct: 134 KGHTQEYRCVDGEI-------------THHSTRSKFVFRGLWRNITAIKG----MAGLTD 176

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL--------- 245
           VF +E+     +   +++            I+  N  +     +  F  P          
Sbjct: 177 VFCEESENISQVSWDTLIPTVRAAGSEI--IIVFNPNKETDPTWTNFVEPYINKMVDGIY 234

Query: 246 --EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
             +D     ++            + +     +D D       G+F ++         +  
Sbjct: 235 QDDDIVVVNVNYVHNPWFTEELKQHMNQMKTVDYDRYLWVYEGKFNKRSDEQVFGGKWRI 294

Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334
           +    +     + P   G D  G   D T +
Sbjct: 295 DNFEVKPEW--HGPY-FGMDF-GFSTDPTAM 321


>gi|53793591|ref|YP_112491.1| terminase large subunit [Flavobacterium phage 11b]
 gi|53748181|emb|CAH56642.1| terminase large subunit [Flavobacterium phage 11b]
          Length = 432

 Score = 74.6 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 80/277 (28%), Gaps = 30/277 (10%)

Query: 90  KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLH 149
           K+ L    ++      PG   +   +    LK T      +  S+L     +   +    
Sbjct: 32  KSALGILWLIEQCQAYPGTRWLMGRSKLKALKETTLNTFFEQASILKITEQYNYNAQ--- 88

Query: 150 PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209
                       +  ++    +    Y+      F    +      F DE +       +
Sbjct: 89  ---------SGVIYWNNGSEILLKDLYAYPSDQNFDSLGSLEISGAFIDECNQITYKAWQ 139

Query: 210 S----ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL------EDWKRYQIDTRTVE 259
                I     +       + T N  +   W Y  F +         D K  Q       
Sbjct: 140 IVKSRIRYKLNQYGIEPKMLGTCNPAK--NWVYAQFYLKDKNGTLDNDKKFIQALPTDNP 197

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFP-QQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
            + + +   ++S    D +  +    G +    +    I +  I+   +   I   +  +
Sbjct: 198 HLPASYLTSLLSL---DENSKQRLYYGNWEYDNDPAKLIDYEKIQNCFTNTFIP--FGEM 252

Query: 319 IMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
            +  DIA  G DK V+    G  +  IF  +   I E
Sbjct: 253 YISADIARFGSDKMVICVWSGFRVVEIFSMAKSSITE 289


>gi|9634048|ref|NP_052122.1| DNA packaging protein B [Yersinia phage phiYeO3-12]
 gi|6599039|emb|CAB63643.1| DNA packaging protein B [Yersinia phage phiYeO3-12]
          Length = 587

 Score = 74.6 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/386 (11%), Positives = 96/386 (24%), Gaps = 86/386 (22%)

Query: 19  LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78
           L+ A+    F  F+  F  W     P      P + Q++    +    +           
Sbjct: 11  LIIAQLKGDFVAFL--FVLWKALALP-----PPTKCQIDMARCLANGDNK---------- 53

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           K  + A RGIGK+ +    ++W +   P + I+ ++ S+ +        +   + +LP  
Sbjct: 54  KFILQAFRGIGKSFITCAFVVWTLWRDPQLKILIVSASKERADANSIF-IKNIIDLLPFL 112

Query: 139 HWFEMQSLSLHPSGWYAE-LLEQSMGIDSKHYTITCRTY----------SEERPDTFVGP 187
              + +         +     +       K   IT +              E P      
Sbjct: 113 AELKPRPGQRDSVISFDVGPAKPDHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATQ 172

Query: 188 HNTHGMAVFNDEASGT-------------PDIINKSILGFFTE--LNPNRFWIMTSNTRR 232
                +     E +                     ++     +        W       R
Sbjct: 173 GAREKLWTLVQEFAALLKPLPTSRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRSR 232

Query: 233 LNGWFY------DIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-- 284
               +Y       +     + ++  Q         D          YG      +  +  
Sbjct: 233 EEDLYYGDRLAPMLREEFNDGFEMLQGQPTDPVRFDMEDLRERELEYGKAGFTLQFMLNP 292

Query: 285 ---LGQ-FPQQEVNNFIPHNYIEEA----------MSREAIDD----------------- 313
                + +P +  +  +     E+A           +R                      
Sbjct: 293 NLSDAEKYPLRLRDAIVCGLDFEKAPMHYQWLPNRQNRNEELPNVGLKGDDIHSYHSCSQ 352

Query: 314 ---LYAPLIMGCDIAGEGGDKTVVVF 336
               Y   I+  D +G G D+T    
Sbjct: 353 NTGQYQQRILVIDPSGRGKDETGYAV 378


>gi|320179507|gb|EFW54461.1| Phage terminase, large subunit [Shigella boydii ATCC 9905]
          Length = 539

 Score = 74.2 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/365 (12%), Positives = 94/365 (25%), Gaps = 40/365 (10%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIK--------GKPLEHF 48
           P      +   + L  +  + E +   K F           WG+         G P+   
Sbjct: 12  PDYQMVFEWRMERLQRIRQNPEILPVLKQFYRTNPAQFIIDWGMTTDPRNIDYGLPVTIP 71

Query: 49  SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108
                 Q E++  +     +  N              R +G +     +   L      M
Sbjct: 72  FLLFPKQEEWIHWIMERWSNRENGITEKS--------REMGLSWTAIGLACSLCLFNKEM 123

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            I   +  E  + ++     + +           ++         +A  +          
Sbjct: 124 VIGFGSRKEEYV-DSTGDPKALFWKARKFVETLPVEFRGSWSEKKHAPYMRVEFP----- 177

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
                     +                F DEA+     +        T        I  S
Sbjct: 178 ----ETGAVIKGEAGDNIGRGDRTTLYFVDEAAFLQRPLLIDAALSQTTRCR----IDLS 229

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
           +   +N  F    +        +    R+    D  ++     +   +  +   E+   +
Sbjct: 230 SVNGMNNPFAQKRH--SGKIPVFTFHWRSDPRKDDEWYHKECDKI-DNPVIVAQELDLNY 286

Query: 289 PQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
                   IP  +++ A+              +   D+A EG DK     R G ++  + 
Sbjct: 287 QASAEGILIPSEWVQAAVDAHIRLGIQPGGQRLGAMDVADEGRDKNACSLRYGILLNDVQ 346

Query: 347 DWSAK 351
           +WS K
Sbjct: 347 EWSGK 351


>gi|261881105|ref|ZP_06007532.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270332111|gb|EFA42897.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 423

 Score = 74.2 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/295 (11%), Positives = 74/295 (25%), Gaps = 42/295 (14%)

Query: 62  VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM--LWLISTRPGM---SIICIANS 116
           +  H       SN   F   I+ GR  GK+   +  +  L    T        I+    +
Sbjct: 2   IKTHKVYYPIYSNKDKFIILITGGRASGKSHFVSSFLERLTFEMTPIDKIVHQILYTRYT 61

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
                 ++  E  +   +   + +F      +      + ++ + +            T 
Sbjct: 62  MVSANISIIPEFLEKAELDGTQKYFRSTRSDVTNRMTGSTVMFRGLK-----------TS 110

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
           S  +       H         DEA     +   ++I+    +       I+  N    N 
Sbjct: 111 SGNQTAKLKSIHG--ITTFVVDEAEEWVSEKEFETIMLSIRQKGIQNRIIIVMNPTDNNH 168

Query: 236 WFYDIFNIPLEDWK----------------RYQIDTRTV-EGIDSGFHEGIISRYGLDSD 278
           W Y  F                                  E +   F   +      + +
Sbjct: 169 WVYKRFIENTHKEVMYDGVPVQISTHPNVLHIHTTYLDNLENLSQEFINEVEDMKANNPE 228

Query: 279 VARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTV 333
                ++G++          H  + +   +         + +G D      D + 
Sbjct: 229 KYAHTVMGRWADVAEGAVFKHIGVVKEFPKWCK-----KVAIGLDFGYT-NDVSA 277


>gi|30387500|ref|NP_848309.1| DNA maturase B [Yersinia pestis phage phiA1122]
 gi|30314137|gb|AAP20545.1| DNA maturase B [Yersinia pestis phage phiA1122]
          Length = 586

 Score = 74.2 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/386 (12%), Positives = 100/386 (25%), Gaps = 86/386 (22%)

Query: 19  LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78
           L+ A+    F  F+  F  W     P+     P + Q++  + +    +           
Sbjct: 10  LVVAQLKGDFVAFL--FVLWKALNLPV-----PTKCQIDMAKVLANGDNK---------- 52

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           K  + A RGIGK+ +    ++W +   P + I+ ++ S+ +        +   + +LP  
Sbjct: 53  KFILQAFRGIGKSFITCAFVVWSLWRDPQLKILIVSASKERADANSIF-IKNIIDLLPFL 111

Query: 139 HWFEMQSLSLHPSGWYAE-LLEQSMGIDSKHYTITCRTY----------SEERPDTFVGP 187
              + +         +     +       K   IT +              E P      
Sbjct: 112 AELKPRPGQRDSVISFDVGPAKPDHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATM 171

Query: 188 HNTHGMAVFNDEASGT-------------PDIINKSILGFFTE--LNPNRFWIMTSNTRR 232
                +     E +                     ++     +        W       R
Sbjct: 172 GAREKLWTLVQEFAALLKPLTSSRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRTR 231

Query: 233 LNGWFYDIFNIP------LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-- 284
               +Y     P       E+ +            D          YG      +  +  
Sbjct: 232 EENLYYSQRLAPMLRAEYDENPEALAGTPTDPVRFDRDDLRERELEYGKAGFTLQFMLNP 291

Query: 285 ---LGQ-FPQQEVNNFIPHNYIEEA-MSREAIDD-------------------------- 313
                + +P +  +  +    +E+A M  + + +                          
Sbjct: 292 NLSDAEKYPLRLRDAIVAALDLEKAPMHYQWLPNRQNIIEDLPNVGLKGDDLHTYHDCSN 351

Query: 314 ---LYAPLIMGCDIAGEGGDKTVVVF 336
               Y   I+  D +G G D+T    
Sbjct: 352 NSGQYQQKILVIDPSGRGKDETGYAV 377


>gi|219499179|ref|YP_002455350.1| putative phage terminase, pbsx family protein [Borrelia burgdorferi
           ZS7]
 gi|218164189|gb|ACK74256.1| putative phage terminase, pbsx family protein [Borrelia burgdorferi
           ZS7]
          Length = 450

 Score = 74.2 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 85/288 (29%), Gaps = 43/288 (14%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMS 109
           Q E +  ++ +             K   S G   GKT L +++++  +           +
Sbjct: 49  QKEVLFDIESN----------NYSKVIFSGGIASGKTFLASYLLVKKLIENKSFYEQDTN 98

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
              I NS   L      ++ K  S+L    + + +S          +L            
Sbjct: 99  NFIIGNSIGLLMTNTVKQIEKICSLLGI-DYEKKKSGQSFCKIAGLKLN----------- 146

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                 Y  +  D F      +   ++ +EA+         ++    +       I  +N
Sbjct: 147 -----IYGGKNRDAFSKIRGGNSAIIYVNEATVIHRETLLEVIKRLRKG--KEIIIFDTN 199

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
                 +F   +    + +K Y   T       + F +     Y          + G++ 
Sbjct: 200 PESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIQAQEKLYRRFPAYRARVLYGEWI 259

Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
             E   F      E   +++     +   IM  D A   GGD T +  
Sbjct: 260 LNESTLFN-----EMIFNQDYE---FKSPIMYIDPAFSVGGDNTAICV 299


>gi|317487266|ref|ZP_07946061.1| hypothetical protein HMPREF0179_03424 [Bilophila wadsworthia 3_1_6]
 gi|316921456|gb|EFV42747.1| hypothetical protein HMPREF0179_03424 [Bilophila wadsworthia 3_1_6]
          Length = 601

 Score = 74.2 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/379 (11%), Positives = 90/379 (23%), Gaps = 82/379 (21%)

Query: 22  AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81
            E +  F+ F+     W     P      P   QL+    + ++             +  
Sbjct: 2   PEKLTDFRVFLTLV--WRHLNLP-----DPTPIQLD----IALYLQHGP-------RRKI 43

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           I A RG+GK+ + A  ++W +   P +  + ++ S+ +  N     +     +   +   
Sbjct: 44  IEAFRGVGKSWITAAYVVWRLRQNPNLKFMVLSASKDRADNFTTFCLRLINEIPILQCLI 103

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE----------ERPDTFVGPHNTH 191
                      +                 I  +              E P+         
Sbjct: 104 PRADQRCSKLSFDVGPARADHAPSVTSKGIFSQITGGRADEIISDDVEVPNNSFTQAMRD 163

Query: 192 GMAVFNDEASGT-----------PDIINKSILGFFTELN-PNRFWIMTS-NTRRLNGWFY 238
            ++    E                    +S+     +     R W     +  +L  +  
Sbjct: 164 KLSEAVKEFDAILKPGGTITYLGTPQTEQSLYNQLPDRGYAIRIWPARYPSEDQLINYGN 223

Query: 239 DIFNIPLEDW----KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ------F 288
           +     +  W          T                 YG      +  +  +      +
Sbjct: 224 ERLAPFILRWLEGEPTLVGRTTDPRRFSDDDLLERELSYGRSGFQLQFMLDTRLSDMEKY 283

Query: 289 PQQEVNNFI----PHNYIEEAMS---------------------------REAIDDLYAP 317
           P +  +  +      +  E+ +                                   Y  
Sbjct: 284 PLKLGDLIVMSCSATDAPEKPIWAAGTTNILNDVPCVGLNGDSRYYGPAFLHGTWLPYTG 343

Query: 318 LIMGCDIAGEGGDKTVVVF 336
            +M  D AG G D+T V  
Sbjct: 344 SVMAIDPAGRGKDETAVCV 362


>gi|240127880|ref|ZP_04740541.1| putative phage associated protein [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 424

 Score = 74.2 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/279 (11%), Positives = 75/279 (26%), Gaps = 26/279 (9%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
             P  +K       G  K+   A  +L L + RP + I+C    +  +++++   +   +
Sbjct: 18  FKPCRYKVMYGGRGGG-KSHGAASALLALGAQRP-LRILCAREIQKSMRDSVHRLLKDKV 75

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
           + L   H++E+                  +   +    +     S               
Sbjct: 76  AQLGLAHFYEITD--------------FEIRGANGTLFVFSGLQS---HTVDSIKSFEGI 118

Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRY 251
             V+ +E  G        +     +     +  +  N        Y  F  +P ED    
Sbjct: 119 DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITL--NPDMETDETYRRFIAMPSEDTWLC 176

Query: 252 QIDTRTVEGIDSGFHEGI-ISRYGLDSDVARIEILGQFPQQEVNNFIP---HNYIEEAMS 307
           +I+ R         +     ++  ++ +       G+               +       
Sbjct: 177 EINWRDNPWFPEALNRERLKAQRSMNKEDYGNIWEGRPRMVSEGAVYRHEIQDAFHSGRV 236

Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
                D   P+    D+         +V R    +  I 
Sbjct: 237 TLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLTSVRIIG 275


>gi|126728773|ref|ZP_01744588.1| terminase, large subunit, putative [Sagittula stellata E-37]
 gi|126710703|gb|EBA09754.1| terminase, large subunit, putative [Sagittula stellata E-37]
          Length = 432

 Score = 74.2 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 68/291 (23%), Gaps = 36/291 (12%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAI-SAGRGIGKTTLNAWMMLWLISTRPG------MSI 110
            +  +               ++  +   GRG GKT   A  +   +             +
Sbjct: 16  ALPYLFDFWAHPHQLPPEGDWRTWVILGGRGAGKTRAGAEWVRAQVEGARPMKPGRCKRM 75

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
             I  +  Q +  +    S  L+  P       Q+                         
Sbjct: 76  AIIGETFDQAREVMVFGDSGILACSPPDRRPLWQASRKCL------------------VW 117

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTS 228
                                    + DE +           +       +  +  +   
Sbjct: 118 PNGAEAMIYSASEPEALRGPQFDGAWVDELAKWKRGQDTWDMLQFGLRLGDHPQVCVT-- 175

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
            T R  G               +         +   F + + SRY  +S +   E+ G  
Sbjct: 176 TTPRNVG-VLKALLALESTVTTHAPTEVNAAHLARSFLDEVRSRYA-NSSLGMQELDGLL 233

Query: 289 PQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD-IAGEG--GDKTVVVF 336
             +        + ++    R  +      +++  D  AG+G   D   +V 
Sbjct: 234 LDEVDGAMWTRDLLDA--QRCGMLPALDRIVVAVDPPAGDGKRSDACGIVV 282


>gi|332560992|ref|ZP_08415310.1| hypothetical protein RSWS8N_18139 [Rhodobacter sphaeroides WS8N]
 gi|332274790|gb|EGJ20106.1| hypothetical protein RSWS8N_18139 [Rhodobacter sphaeroides WS8N]
          Length = 468

 Score = 74.2 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/282 (12%), Positives = 73/282 (25%), Gaps = 32/282 (11%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLIST--RPGMSI--ICIANSETQLKNTLWAEVS 129
           + + FK  + + R  GKT       +    T  +       + ++  E Q    +   + 
Sbjct: 23  DDSRFKIGMFS-RQTGKTFSTCGECVDACFTAWKDDRRTRWVILSRGERQAAEAMTEVIK 81

Query: 130 -------KWLSMLPHRHWFEMQSLSLH---PSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
                  +  + L        +          G  A      +   +             
Sbjct: 82  PFTRAFYEVYNTLVKGGEPRFEEGEFRAPQEKGPDAVYKALEVAFPNGSRITA------- 134

Query: 180 RPDTFVGPHNTHGMAVFNDEASG--TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
            P             V  DE +       I  ++    ++        + S        F
Sbjct: 135 LPANPDTARGFSAN-VILDEFAFHAKSREIWAALFPVISKGGQKLR--VISTPNGKGNKF 191

Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297
           Y++       W R+ +D              ++     D D    E   ++  +  N ++
Sbjct: 192 YELMTAEGSVWSRHVVDIHEAVRQGLDRDIDMLRAGMADEDAWAQEYELKWLDEA-NAWL 250

Query: 298 PHNYIEEAMS---REAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
            ++ I              +  P  +G DIA    D  V+  
Sbjct: 251 DYDLISACEHPAAGMPGLYMGGPCFVGVDIAAR-NDLFVIWV 291


>gi|194100409|ref|YP_002003984.1| gp19 [Enterobacteria phage 13a]
 gi|193201456|gb|ACF15933.1| gp19 [Enterobacteria phage 13a]
          Length = 586

 Score = 74.2 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/386 (12%), Positives = 100/386 (25%), Gaps = 86/386 (22%)

Query: 19  LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78
           L+ A+    F  F+  F  W     P+     P + Q++  + +    +           
Sbjct: 10  LVVAQLKGDFVAFL--FVLWKALNLPV-----PTKCQIDMAKVLANGDNK---------- 52

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           K  + A RGIGK+ +    ++W +   P + I+ ++ S+ +        +   + +LP  
Sbjct: 53  KFILQAFRGIGKSFITCAFVVWSLWRDPQLKILIVSASKERADANSIF-IKNIIDLLPFL 111

Query: 139 HWFEMQSLSLHPSGWYAE-LLEQSMGIDSKHYTITCRTY----------SEERPDTFVGP 187
              + +         +     +       K   IT +              E P      
Sbjct: 112 SELKPRPGQRDSVISFDVGPAKPDHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATM 171

Query: 188 HNTHGMAVFNDEASGT-------------PDIINKSILGFFTE--LNPNRFWIMTSNTRR 232
                +     E +                     ++     +        W       R
Sbjct: 172 GAREKLWTLVQEFAALLKPLPSSRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRTR 231

Query: 233 LNGWFYDIFNIP------LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-- 284
               +Y     P       E+ +            D          YG      +  +  
Sbjct: 232 EENLYYSQRLAPMLRAEYDENPEALAGTPTDPVRFDRDDLRERELEYGKAGFTLQFMLNP 291

Query: 285 ---LGQ-FPQQEVNNFIPHNYIEEA-MSREAIDD-------------------------- 313
                + +P +  +  +    +E+A M  + + +                          
Sbjct: 292 NLSDAEKYPLRLRDAIVAALDLEKAPMHYQWLPNRQNIIEDLPNVGLKGDDLHTYHDCSN 351

Query: 314 ---LYAPLIMGCDIAGEGGDKTVVVF 336
               Y   I+  D +G G D+T    
Sbjct: 352 NSGQYQQKILVIDPSGRGKDETGYAV 377


>gi|313892516|ref|ZP_07826105.1| DNA maturase B [Dialister microaerophilus UPII 345-E]
 gi|313119095|gb|EFR42298.1| DNA maturase B [Dialister microaerophilus UPII 345-E]
          Length = 567

 Score = 74.2 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/395 (11%), Positives = 95/395 (24%), Gaps = 87/395 (22%)

Query: 8   DQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCH 67
               EQ++       +    F+ FV     W   G P     +P   Q +  E +    +
Sbjct: 1   MYWTEQQI------TKAKEDFRIFVFIV--WRSIGLP-----EPTEIQYDIAETLMNTPN 47

Query: 68  SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127
                      +  I   RG+ K+ L    ++W +   P + ++ ++ S+ +        
Sbjct: 48  D----------RFIIEGFRGVAKSFLTCAYVVWKLWKDPQLKVLVVSASKDRADANAIFI 97

Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY----------S 177
               L +         +      + +   L    +    K   IT +             
Sbjct: 98  KRIILLIDFLDILRPQKGQRDTQNLFDVGLAIPDISPSVKSVGITGQITGSRADLLIADD 157

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGT------------PDIINKSILGFFTELNPNRFWI 225
            E P+          +     E                P                 R W 
Sbjct: 158 VEIPNNSSTQTQRMQLQERVKEFDAVLKPKGQIIYLGTPQNEMSLYNELTKRGYKKRIWT 217

Query: 226 MT--SNTRRLNGWFYDIFNIPLEDWKR----YQIDTRTVEGIDSGFHEGIISRYGLDSDV 279
           +   S  +    +  ++  +  E +      Y          ++         YG     
Sbjct: 218 VQYPSTKKERENYGDELAPLIAERYDNAPQAYAGQPTDPTRFNTEEIAKRKLSYGKAGFA 277

Query: 280 ARIEILGQ------FPQQEVNNFIP------------------------------HNYIE 303
            +  +         +P +  +  +                                +Y  
Sbjct: 278 LQFMLNTNLSDAEKYPLKIKDLIVTDIDNTKGSLKYSWCSERSHRLIDIPCVALKGDYFY 337

Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
             +      + Y   +M  D +G G D+T     +
Sbjct: 338 SPLGMAEETEEYTGCVMAIDPSGRGKDETAYAIIK 372


>gi|226246423|ref|YP_002775825.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           29805]
 gi|226201818|gb|ACO38403.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           29805]
          Length = 450

 Score = 73.8 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 85/288 (29%), Gaps = 43/288 (14%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMS 109
           Q E +  ++ +             K   S G   GKT L +++++  +           +
Sbjct: 49  QKEVLFDIESN----------NYSKVIFSGGIASGKTFLASYLLVKKLIENKSFYEQDTN 98

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
              I NS   L      ++ K  S+L    + + +S          +L            
Sbjct: 99  NFIIGNSIGLLMTNTVKQIEKICSLLGI-DYEKKKSGQSFCKIAGLKLN----------- 146

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                 Y  +  D F      +   ++ +EA+         ++    +       I  +N
Sbjct: 147 -----IYGGKNRDAFSKIRGGNSAIIYVNEATVIHRETLLEVIKRLRKG--KEIIIFDTN 199

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
                 +F   +    + +K Y   T       + F +     Y          + G++ 
Sbjct: 200 PESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSTDFIQTQEKLYRRFPAYRARVLYGEWI 259

Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
             E   F      E   +++     +   IM  D A   GGD T +  
Sbjct: 260 LNESTLFN-----EMIFNQDYE---FKSPIMYIDPAFSVGGDNTAICV 299


>gi|317483571|ref|ZP_07942553.1| phage terminase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316914997|gb|EFV36437.1| phage terminase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 487

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 71/281 (25%), Gaps = 39/281 (13%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            RWQ   +  +             ++    +S  R  GKT   + +++ L +  P +++I
Sbjct: 42  DRWQQGLLTLI--LGRRADGTFAASVGGVVLSICRQTGKTFTVSSLVVILCTLIPNLTVI 99

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A+      N  +  V   +       + +    +    G       Q +   +    +
Sbjct: 100 WTAHHNRTNSN-TFDHVRTLVRNPALIGYLDHSGRTDGVRGGNG---MQEITFANGSKIL 155

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
                                  +  DEA    +     ++   T  +PN   +      
Sbjct: 156 FGARAQGFARGN------DAVDIIVFDEAQILTEQAISDMVPA-TNTSPNALVLYIGTPP 208

Query: 232 RLNGWFYDIFNIPLE-----------------------DWKRYQIDTRTVEGIDSGFHEG 268
           R             +                         +  + +              
Sbjct: 209 RPADPGEAFTERRRQALAGEDDMLYVEFSADRDADSDDRAQWRKANPSFPRRTSETSMLR 268

Query: 269 IISRYGLDSDVARIEILGQFPQQEVN-NFIPHNYIEEAMSR 308
           +  + G DS   R E LG + +   N    P  + + A   
Sbjct: 269 MQRQLGKDS--FRREALGIWDETATNRAINPEQWTKAATGT 307


>gi|268686275|ref|ZP_06153137.1| phage terminase [Neisseria gonorrhoeae SK-93-1035]
 gi|268626559|gb|EEZ58959.1| phage terminase [Neisseria gonorrhoeae SK-93-1035]
          Length = 417

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/279 (11%), Positives = 75/279 (26%), Gaps = 26/279 (9%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
             P  +K       G  K+   A  +L L + RP + I+C    +  +++++   +   +
Sbjct: 11  FKPCRYKVMYGGRGGG-KSHGAASALLALGAQRP-LRILCAREIQKSMRDSVHRLLKDKV 68

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
           + L   H++E+                  +   +    +     S               
Sbjct: 69  AQLGLAHFYEITD--------------FEIRGANGTLFVFSGLQS---HTVDSIKSFEGI 111

Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRY 251
             V+ +E  G        +     +     +  +  N        Y  F  +P ED    
Sbjct: 112 DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITL--NPDMETDETYRRFIAMPSEDTWLC 169

Query: 252 QIDTRTVEGIDSGFHEGI-ISRYGLDSDVARIEILGQFPQQEVNNFIP---HNYIEEAMS 307
           +I+ R         +     ++  ++ +       G+               +       
Sbjct: 170 EINWRDNPWFPEALNRERLKAQRSMNKEDYGNIWEGRPRMVSEGAVYRHEIQDAFHSGRV 229

Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
                D   P+    D+         +V R    +  I 
Sbjct: 230 TLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLTSVRIIG 268


>gi|203288609|ref|YP_002223516.1| bsr protein [Borrelia duttonii Ly]
 gi|201084316|gb|ACH93904.1| bsr protein [Borrelia duttonii Ly]
          Length = 450

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 85/290 (29%), Gaps = 43/290 (14%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST-----RPGMS 109
           Q E +  +           N    K   + G   GKT L +++++ L+           +
Sbjct: 49  QKEVLRDI----------DNNFCSKIIFNGGISSGKTFLASYLLIKLLIINRDHYHKDTN 98

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
              + +S   L      ++ K  S+L   +                   + S  +     
Sbjct: 99  NFIVGSSIGTLLANTLKQIEKICSLLNIEYLL-----------------KDSRQVTCTIA 141

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
            +T   Y  +  D+F     ++   V+ +EA+         I+    +       I  +N
Sbjct: 142 GLTLNIYGGKNIDSFTKIRGSNSALVYVNEATLMHKETLLEIMKRLRQ--KPGIIIFDTN 199

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
                 +F   +    + ++ Y  +          F +   + Y   S      +LG++ 
Sbjct: 200 PDHPAHYFKVDYIDNRDVYRTYNFNIYDNPLNSKDFIKTQEAIYKNLSAYKARVLLGEWT 259

Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVFRR 338
               + F  +  I                IM  D A   G D T +    
Sbjct: 260 ASIDSCF--NEVILNCEYTFKSP------IMYIDPAFSVGMDNTAICVFE 301


>gi|209885731|ref|YP_002289588.1| phage DNA Packaging Protein [Oligotropha carboxidovorans OM5]
 gi|209873927|gb|ACI93723.1| phage DNA Packaging Protein [Oligotropha carboxidovorans OM5]
          Length = 434

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 70/262 (26%), Gaps = 35/262 (13%)

Query: 84  AGRGIGKTTLNAWMM------LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
            GRG GKT   A  +      L  ++ +P   I  +  +E  ++  +   VS  L++   
Sbjct: 52  GGRGAGKTRAGAEWIRAQALGLAPLAQQPAGRIALVGETEHDVREVMIEGVSGLLAVHRR 111

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
                 Q                                     +             + 
Sbjct: 112 DERPMWQPSRRRLE------------------WKNGAVAHAFSAEDPESLRGPQFACAWA 153

Query: 198 DEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255
           DE +     +     +          R   + + T R       + N             
Sbjct: 154 DELAKWRYAEAAFDMLQFGLRLGAQPRQ--LITTTPRPTALIKRLLN-DESCVTTRAATR 210

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY 315
                +   F + +++RY     + R E+ G+  ++  +       IE     EA     
Sbjct: 211 SNALHLAPTFLQSVMARYAGT-RLGRQELDGELIEERPDALWSRGLIETCRISEAPPLQ- 268

Query: 316 APLIMGCDI---AGEGGDKTVV 334
             +++  D    +G+  D   +
Sbjct: 269 -RIVVAVDPPATSGKRADACGI 289


>gi|247553170|gb|ACS94899.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           297]
          Length = 450

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 85/288 (29%), Gaps = 43/288 (14%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMS 109
           Q E +  ++ +             K   S G   GKT L +++++  +           +
Sbjct: 49  QKEVLFDIESN----------NYSKVIFSGGIASGKTFLASYLLVKKLIENKSFYEQDTN 98

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
              I NS   L      ++ K  S+L    + + +S          +L            
Sbjct: 99  NFIIGNSIGLLMTNTVKQIEKICSLLGI-DYEKKKSGQSFCKIAGLKLN----------- 146

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                 Y  +  D F      +   ++ +EA+         ++    +       I  +N
Sbjct: 147 -----IYGGKNRDAFSKIRGGNSAIIYVNEATVIHRETLLEVIKRLRKG--KEIIIFDTN 199

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
                 +F   +    + +K Y   T       + F +     Y          + G++ 
Sbjct: 200 PESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIQTQEKLYRRFPAYRARVLYGEWI 259

Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
             E   F      E   +++     +   IM  D A   GGD T +  
Sbjct: 260 LNESTLFN-----EMIFNQDYE---FKSPIMYIDPAFSVGGDNTAICV 299


>gi|11496928|ref|NP_045704.1| hypothetical protein BBA31 [Borrelia burgdorferi B31]
 gi|195942693|ref|ZP_03088075.1| hypothetical protein Bbur8_07694 [Borrelia burgdorferi 80a]
 gi|224796822|ref|YP_002642504.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           72a]
 gi|224796893|ref|YP_002642572.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           CA-11.2a]
 gi|225573840|ref|YP_002724449.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           94a]
 gi|226234883|ref|YP_002775758.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           Bol26]
 gi|2690260|gb|AAC66261.1| conserved hypothetical protein [Borrelia burgdorferi B31]
 gi|221237191|gb|ACM10059.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           72a]
 gi|224554443|gb|ACN55827.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           CA-11.2a]
 gi|225546432|gb|ACN92439.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           94a]
 gi|226202357|gb|ACO38016.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           Bol26]
 gi|247552767|gb|ACS94776.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           N40]
          Length = 450

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 85/288 (29%), Gaps = 43/288 (14%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMS 109
           Q E +  ++ +             K   S G   GKT L +++++  +           +
Sbjct: 49  QKEVLFDIESN----------NYSKVIFSGGIASGKTFLASYLLVKKLIENKSFYEQDTN 98

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
              I NS   L      ++ K  S+L    + + +S          +L            
Sbjct: 99  NFIIGNSIGLLMTNTVKQIEKICSLLGI-DYEKKKSGQSFCKIAGLKLN----------- 146

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                 Y  +  D F      +   ++ +EA+         ++    +       I  +N
Sbjct: 147 -----IYGGKNRDAFSKIRGGNSAIIYVNEATVIHRETLLEVIKRLRKG--KEIIIFDTN 199

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
                 +F   +    + +K Y   T       + F +     Y          + G++ 
Sbjct: 200 PESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIQTQEKLYRRFPAYRARVLYGEWI 259

Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
             E   F      E   +++     +   IM  D A   GGD T +  
Sbjct: 260 LNESTLFN-----EMIFNQDYE---FKSPIMYIDPAFSVGGDNTAICV 299


>gi|254560550|ref|YP_003067645.1| hypothetical protein METDI2093 [Methylobacterium extorquens DM4]
 gi|254267828|emb|CAX23679.1| conserved hypothetical protein [Methylobacterium extorquens DM4]
          Length = 421

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 80/290 (27%), Gaps = 35/290 (12%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTR------PGMS 109
             +EA  +H   +     P  +   A+  GRG GKT   A  +  L          P   
Sbjct: 10  RLLEADWLHLARHDQLPPPGNWTTWAVIGGRGSGKTRTGAEWVRGLAYGDPVFSPEPVER 69

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I  +  +   +++ +    S  L++                 G    + + S     +  
Sbjct: 70  IALVGETFADVRDVMIEGPSGLLALPRL--------------GGAPPVWQPSRR---RVV 112

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMT 227
                       +           AV++DE +     +     I          R  +  
Sbjct: 113 FGNGAVALAFSAEEPDSLRGPQFGAVWSDEVAKWREAEATYDMIQFGLRLGTHPRGLVT- 171

Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
             T R       +   P              + +   F E ++ RY     + R E+ G+
Sbjct: 172 -TTPRPVPLIRRLLADPRT-VVTRSRTADNAQNLAPSFLEEVVGRYAGT-RLGRQELDGE 228

Query: 288 FPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVV 334
             +   +     + IE A   E        + +  D    +  G D   +
Sbjct: 229 LIEDRPDALWTRDSIERARVSEVPPLQ--RIAVAIDPPASSRVGADACGI 276


>gi|119637788|ref|YP_919024.1| DNA packaging protein B [Yersinia phage Berlin]
 gi|119391819|emb|CAJ70692.1| hypothetical protein [Yersinia phage Berlin]
 gi|312436388|gb|ADQ83197.1| DNA maturase B [Yersinia phage Yep-phi]
          Length = 585

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 45/387 (11%), Positives = 99/387 (25%), Gaps = 88/387 (22%)

Query: 19  LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78
           L+ A+    F  F+  F  W     P     +P + Q++    +    H           
Sbjct: 10  LIVAQLKGDFVAFL--FVLWKALNLP-----KPTKCQIDMARTLADGDHK---------- 52

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           K  + A RGIGK+ +    ++W++   P + ++ ++ S+ +        +   + +LP  
Sbjct: 53  KFILQAFRGIGKSFITCAFVVWVLWRDPQLKVLIVSASKERADANSIF-IKNIIDLLPFL 111

Query: 139 HWFEMQSLSLHPSGWYAELL-EQSMGIDSKHYTITCRTY----------SEERPDTFVGP 187
              + +         +   L +       K   IT +              E P      
Sbjct: 112 AELKPRPGQRDSVISFDVGLAKPDHSPSVKSVGITGQLTGSRADIIIADDVEVPGNSSTS 171

Query: 188 HNTHGMAVFNDEASGT-------------PDIINKSILGFFTE--LNPNRFWIMTSNTRR 232
                +     E +                     ++     +        W      R 
Sbjct: 172 SAREKLWTLVTEFAALLKPLPTSRVIYLGTPQTEMTLYKELEDNKGYSTVIWPAQY-PRN 230

Query: 233 LNGWFYDIFNIP-------LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI- 284
                Y    +         E ++  +         D+         YG      +  + 
Sbjct: 231 DAEALYYGDRLAPMLKAEYDEGFELLRGQPTDPVRFDTDDLRERELEYGKAGYTLQFMLN 290

Query: 285 ----LGQ-FPQQEVNNFI----------PHNYIEEAMSREAIDD---------------- 313
                 + +P +  +  +           + ++    +R                     
Sbjct: 291 PNLSDAEKYPLRLRDAIVCAVDPERAPLSYQWLPNRQNRNEELPNVGLKGDDIHSFHTCS 350

Query: 314 ----LYAPLIMGCDIAGEGGDKTVVVF 336
                Y   I+  D +G G D+T    
Sbjct: 351 SRTAEYQSKILVIDPSGRGKDETGYAV 377


>gi|94263678|ref|ZP_01287487.1| hypothetical protein MldDRAFT_1386 [delta proteobacterium MLMS-1]
 gi|93455983|gb|EAT06138.1| hypothetical protein MldDRAFT_1386 [delta proteobacterium MLMS-1]
          Length = 457

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/321 (13%), Positives = 84/321 (26%), Gaps = 47/321 (14%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +        +     + +    AGR  GKT   A + ++L +         I  +   L
Sbjct: 41  ELFTRLAGGRSAPTERVRELWAIAGRRSGKTNATAGIAVYLAT---------IGAAVDGL 91

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLH--PSGWYAELLEQSMGIDSKHYTITCRTYSE 178
            + L       +++L         +L            L +  +  D++   +  R   E
Sbjct: 92  LDKLAPGERGVVALLAVDRQQAKVALRYIAGMFEASPVLAQMVVKRDAEALHLDNRISIE 151

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPD--------IINKSILGFFTELNPNRFWIMTSNT 230
              + +        +A   DE +   D           ++IL            +  S+ 
Sbjct: 152 VSTNNYRSVRGRTLLAAVLDEVAFFRDDQSANPDVETYRAILPGLATTGG--LLVGISSP 209

Query: 231 RRLNGWFYDIFNI---PLEDWKRYQIDTRT-VEGIDSGFHEGIISRYGLDSDVARIEILG 286
               G  Y  +        D    Q  T      I +       +     +        G
Sbjct: 210 YAKRGLLYQKWRKHYGQDGDILVIQGATPDFNPTIPTSVITDAEADDPAAARAEWF---G 266

Query: 287 QFPQQEVNNFIPHNYIEEAMSREAIDDLYAP---LIMGCDIAGEGGDKTVVVF------- 336
            F       F+    +E       +   Y          D AG G D+  +         
Sbjct: 267 LFRDDVEG-FLTREVVEACTRPSPLVIPYNRENIYTAFADPAGGGRDEFCLAIGHQEGEV 325

Query: 337 --------RRGNIIEHIFDWS 349
                   RRG   + + +++
Sbjct: 326 VVVDNLQARRGAPAKIVAEYA 346


>gi|247553003|gb|ACS94840.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           JD1]
          Length = 450

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 85/288 (29%), Gaps = 43/288 (14%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMS 109
           Q E +  ++ +             K   S G   GKT L +++++  +           +
Sbjct: 49  QKEVLFDIESN----------NYSKVIFSGGIASGKTFLASYLLVKKLIENKSFYEQDTN 98

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
              I NS   L      ++ K  S+L    + + +S          +L            
Sbjct: 99  NFIIGNSIGLLMTNTVKQIEKICSLLGI-DYEKKKSGQSFCKIAGLKLN----------- 146

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                 Y  +  D F      +   ++ +EA+         ++    +       I  +N
Sbjct: 147 -----IYGGKNRDAFSKIRGGNSAIIYVNEATVIHKETLLEVIKRLRKG--KEIIIFDTN 199

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
                 +F   +    + +K Y   T       + F +     Y          + G++ 
Sbjct: 200 PESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIQTQEKLYRRFPAYRARVLYGEWI 259

Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
             E   F      E   +++     +   IM  D A   GGD T +  
Sbjct: 260 LNESTLFN-----EMIFNQDYE---FKSPIMYIDPAFSVGGDNTAICV 299


>gi|219807285|ref|YP_002477581.1| phage terminase, pbsx family protein [Borrelia burgdorferi 156a]
 gi|224797061|ref|YP_002642778.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           64b]
 gi|225571759|ref|YP_002724342.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           118a]
 gi|219692550|gb|ACL33771.1| phage terminase, pbsx family protein [Borrelia burgdorferi 156a]
 gi|223929616|gb|ACN24327.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           64b]
 gi|225547179|gb|ACN93166.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           118a]
          Length = 450

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 85/288 (29%), Gaps = 43/288 (14%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMS 109
           Q E +  ++ +             K   S G   GKT L +++++  +           +
Sbjct: 49  QKEVLFDIESN----------NYSKVIFSGGIASGKTFLASYLLVKKLIENKSFYEQDTN 98

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
              I NS   L      ++ K  S+L    + + +S          +L            
Sbjct: 99  NFIIGNSIGLLMTNTVKQIEKICSLLGI-DYEKKKSGQSFCKIAGLKLN----------- 146

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                 Y  +  D F      +   ++ +EA+         ++    +       I  +N
Sbjct: 147 -----IYGGKNRDAFSKIRGGNSAIIYVNEATVIHKETLLEVIKRLRKG--KEIIIFDTN 199

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
                 +F   +    + +K Y   T       + F +     Y          + G++ 
Sbjct: 200 PESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIQTQEKLYRRFPAYRARVLYGEWI 259

Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
             E   F      E   +++     +   IM  D A   GGD T +  
Sbjct: 260 LNESTLFN-----EMIFNQDYE---FKSPIMYIDPAFSVGGDNTAICV 299


>gi|137614|sp|P10310|VDMB_BPT3 RecName: Full=DNA maturase B; AltName: Full=DNA-packaging protein
           B; AltName: Full=GP19
 gi|215814|gb|AAA92528.1| DNA-packaging protein B [Enterobacteria phage T3]
          Length = 586

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/387 (12%), Positives = 100/387 (25%), Gaps = 88/387 (22%)

Query: 19  LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78
           L+ A+    F  F+  F  W     P+     P + Q++  + +    +           
Sbjct: 10  LVVAQLKGDFVAFL--FVLWKALNLPV-----PTKCQIDMAKVLANGDNK---------- 52

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK-NTLWAEVSKWLSMLPH 137
           K  + A RGIGK+ +    ++W +   P + I+ ++ S+ +   N+++  +   + +LP 
Sbjct: 53  KFILQAFRGIGKSFITCAFVVWTLWRDPQLKILIVSASKERADLNSIF--IKNIIDLLPF 110

Query: 138 RHWFEMQSLSLHPSGWYAE-LLEQSMGIDSKHYTITCRTY----------SEERPDTFVG 186
               +           +     +       K   IT +              E P     
Sbjct: 111 LDELKPSPGQRDSVISFDVGPAKPDHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSAT 170

Query: 187 PHNTHGMAVFNDEASGT-------------PDIINKSILGFFTE--LNPNRFWIMTSNTR 231
                 +     E                       ++     +        W       
Sbjct: 171 QGAREKLWTLVQEFRALLKPLPTSRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRS 230

Query: 232 RLNGWFY------DIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI- 284
           R    +Y       +     + ++  Q         D          YG      +  + 
Sbjct: 231 REEDLYYGERLAPMLREEFNDGFEMLQGQPTDPVRFDMEDLRERELEYGKAGFTLQFMLN 290

Query: 285 ----LGQ-FPQQEVNNFIPHNYIEEA----------MSREAIDD---------------- 313
                 + +P +  +  +     E+A           +R                     
Sbjct: 291 PNLSDAEKYPLRLRDAIVCGLDFEKAPMHYQWLPNRQNRNEELPNVGLKGDDIHSYHSCS 350

Query: 314 ----LYAPLIMGCDIAGEGGDKTVVVF 336
                Y   I+  D +G G D+T    
Sbjct: 351 QNTGQYQQRILVIDPSGRGKDETGYAV 377


>gi|203288341|ref|YP_002223391.1| bsr protein [Borrelia recurrentis A1]
 gi|201085561|gb|ACH95134.1| bsr protein [Borrelia recurrentis A1]
          Length = 412

 Score = 73.8 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 83/290 (28%), Gaps = 43/290 (14%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST-----RPGMS 109
           Q E +  +           N    K   + G   GKT L +++++ L+           +
Sbjct: 11  QKEVLRDI----------DNNFCSKIIFNGGISSGKTFLASYLLIKLLIINRDNYHKDTN 60

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
                +S   L      ++ K  S+L   +                   + S  +     
Sbjct: 61  NFIFGSSIGTLLANTLKQIEKICSLLNIEYLL-----------------KDSRQVTCTIA 103

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
            +T   Y  +  D+F     ++   V+ +EA+         I+    +       I  +N
Sbjct: 104 GLTLNIYGGKNIDSFTKIRGSNSALVYVNEATLMHKETLLEIMKRLRQ--KPGIIIFDTN 161

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
                 +F   +    + ++ Y             F +   + Y   S      +LG++ 
Sbjct: 162 PDHPAHYFKVDYIDNRDVYRTYNFSIYDNPLNSKDFIKTQEAIYKNLSAYKARVLLGEWT 221

Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVFRR 338
               + F  +  I                IM  D A   G D T +    
Sbjct: 222 ASIDSCF--NEVILNCEYTFKSP------IMYIDPAFSVGMDNTAICVFE 263


>gi|325272814|ref|ZP_08139151.1| DNA maturase B [Pseudomonas sp. TJI-51]
 gi|324102019|gb|EGB99528.1| DNA maturase B [Pseudomonas sp. TJI-51]
          Length = 562

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 44/375 (11%), Positives = 81/375 (21%), Gaps = 84/375 (22%)

Query: 27  SFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR 86
            F+ F+     W     P     +P   Q +    +                +C I A R
Sbjct: 13  DFRKFIYLV--WKHLNLP-----EPTPVQYDIARYLQHGPR-----------RCVIEAFR 54

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G+GK+ + A  + WL+   P + I+ ++ S  +              M   +H       
Sbjct: 55  GVGKSWVTAAFVCWLLWRNPQLRILVVSASSARADAFSTFVKRLIHEMPLLQHLKPGPDQ 114

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSE----------ERPDTFVGPHNTHGMAVF 196
                 +             K   I  +              E P+          ++  
Sbjct: 115 IDKMVAFEVAPALPDQSPSVKSVGIMGQITGSRADIIIADDIEIPNNSATQMMRDKLSEA 174

Query: 197 NDEASGT-------------PDIINKSILGFFTELNPNR-FWIMTSNTRRLNGWFYD--- 239
             E                       S+     E       W             Y    
Sbjct: 175 VKEFDAILKPLQSARIIYLGTPQCEMSLYNRLPERGYEIRVWPALY-PTLQKVPHYKGSL 233

Query: 240 --IFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG------QFPQQ 291
                  +E               D       ++ YG      +  +        +FP +
Sbjct: 234 APFITQAMEADPSLSGKPTDPRRFDDKDLMERMASYGRAGFALQFMLDTSLSDGDKFPLK 293

Query: 292 EVNNFI------------------------------PHNYIEEAMSREAIDDLYAPLIMG 321
             +  +                                +     M   +    Y   +M 
Sbjct: 294 VQDLMVMNLNPIMAHVKLAWAASPELCINDMPTVALTGDRFYRPMWHASEMSEYTGCVMA 353

Query: 322 CDIAGEGGDKTVVVF 336
            D +G G D+T    
Sbjct: 354 IDPSGRGQDETGYAV 368


>gi|212712338|ref|ZP_03320466.1| hypothetical protein PROVALCAL_03426 [Providencia alcalifaciens DSM
           30120]
 gi|212685084|gb|EEB44612.1| hypothetical protein PROVALCAL_03426 [Providencia alcalifaciens DSM
           30120]
          Length = 411

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 74/269 (27%), Gaps = 28/269 (10%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLIST----RPGMSIICIANSETQLKNTLWAEVSKW 131
             ++C+   GRG  KT   A M                I+C       L+ +   EV + 
Sbjct: 22  KRYRCSY-GGRGSAKTRTFALMSAVRAYQASNNGESGVILCAREFMNSLEESSMEEVKQA 80

Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
           +  +P              +  +    +    +D K   + C      R +         
Sbjct: 81  IRAVP------------WLAAHFDIGEKYIRTVDRKVSYVFC----GLRHNLDSIKSKAR 124

Query: 192 GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKR 250
            +  + DEA    +   + +     E N    W+   N  +        F     +D   
Sbjct: 125 ILLCWVDEAETVSETAWQKLDPTVREDNSE-IWVTW-NPEKDGSATDKRFRKNASDDCIT 182

Query: 251 YQIDTRTVEGIDSGFH-EGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309
            +++        S         R  LD         G + +      +   Y E     +
Sbjct: 183 VEMNYSDNPWFPSVLEGVRQKDRERLDDATYAWVWEGAYLENSEKQVLAGKY-EIRSFSD 241

Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
            +      L+ G D  G   D   +  R+
Sbjct: 242 DLWKKADRLLFGADF-GFAKDPNTL-LRQ 268


>gi|251810445|ref|ZP_04824918.1| large terminase subunit [Staphylococcus epidermidis BCM-HMP0060]
 gi|251806049|gb|EES58706.1| large terminase subunit [Staphylococcus epidermidis BCM-HMP0060]
          Length = 420

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/291 (11%), Positives = 85/291 (29%), Gaps = 29/291 (9%)

Query: 72  NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131
             +          GRG GK++  + ++   +  R  M+ + +  ++  L  +++ ++   
Sbjct: 21  TKDREKLNIVAKGGRGSGKSSDISIIIT-QLIMRYPMNAVVVRKTDNTLATSVFEQIKWA 79

Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
           +      H F+++   +             +    +   I  R          +      
Sbjct: 80  IEEQKVSHLFKVKVSPM------------EITYVPRGNRIIFRGAQNPERLKSLKDSRFP 127

Query: 192 GMAVFNDE-ASGTPDIINKSILGFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--I 243
              ++ +E A    +    +I                +  + N   R   W    +    
Sbjct: 128 FSIMWIEELAEFKTEDEVTTITNSMLRGELDDGLFYKFFFSYNPPKRKQSWVNKKYETSF 187

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
             ++   +         I   F +   S    +    R E +G+         +P N ++
Sbjct: 188 QPDNTFVHHSTYLDNPFISKQFIQEAESAKERNEQRYRWEYMGEAIGSG---VVPFNNLQ 244

Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGN----IIEHIFDWSA 350
                + + D +  +  G D  G   D    V    +    +I  I ++  
Sbjct: 245 IETIPQEMIDGFDNIRNGLDF-GYADDPLAFVRWHYDKKKRVIYAIDEYYG 294


>gi|323940932|gb|EGB37119.1| hypothetical protein ERDG_02336 [Escherichia coli E482]
          Length = 443

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 53/288 (18%), Positives = 82/288 (28%), Gaps = 38/288 (13%)

Query: 81  AISAGRGIGKTTLNAWMMLWLI---STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
           A+  GR  GKT + +   +        RPGM I               AE  ++  +   
Sbjct: 27  AVRCGRRWGKTFMLSSAAVTYATSQFRRPGMDIELGGRVG-----IFTAEYRQYQEIYDK 81

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
                +             LL+    ID                D  +         +  
Sbjct: 82  LEEILLPLKKSFSRQEKRLLLKNGGKIDFWVTN-----------DNKLAGRGREYEIILI 130

Query: 198 DEASG------TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY 251
           DEA+         +I  KSI           +   T +      +FY I +     +  +
Sbjct: 131 DEAAFTKSPEMLKEIWPKSIKPTLLTTKGRAYVFSTPDGVDEENFFYAICHNKDLGFHEH 190

Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311
              T +   +     E    R   D  V R E L +F      +        E  +++  
Sbjct: 191 HAPTSSNPFVPPEELEK--ERQNNDPRVFRQEFLAEFVDWSAASLFDVRKWFEGENQDQP 248

Query: 312 DDLYA---PLIMGCDIAGEGG---DKTVVVF-----RRGNIIEHIFDW 348
            D       +    D A +GG   D T VV+     R G     I DW
Sbjct: 249 VDYPEMCQAVFAVMDTAVKGGTDHDGTAVVYYAVDTRPGIQRLTILDW 296


>gi|218964078|ref|YP_002455438.1| putative phage terminase, pbsx family protein [Borrelia afzelii
           ACA-1]
 gi|216752969|gb|ACJ73583.1| putative phage terminase, pbsx family protein [Borrelia afzelii
           ACA-1]
          Length = 450

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/288 (16%), Positives = 84/288 (29%), Gaps = 43/288 (14%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMS 109
           Q E +  ++ H          T  K   S G   GKT L +++++  +           +
Sbjct: 49  QKEVLFDIESH----------TYSKVIFSGGIASGKTFLASYLLIKKLIENKSFYEQDTN 98

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
              I NS   L      ++ K   +L    + + +S          EL            
Sbjct: 99  NFIIGNSIGLLMTNTIKQIEKICGLLGI-DYQKKKSGQSFCKIAGLELN----------- 146

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                 Y  +  D F      +   ++ +EA+         +             I  +N
Sbjct: 147 -----IYGGKNRDAFSKIRGGNSAIIYVNEATVIHKETL--LEVMKRLRKGKSIIIFDTN 199

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
                 +F   +    + +K Y   T       + F E     Y          + G++ 
Sbjct: 200 PESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIETQEKLYKHFPAYKARVLYGEWV 259

Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
             E + F      E   +++     +   IM  D A   GGD T V  
Sbjct: 260 LNESSLFN-----EMIFNQDYE---FKSPIMYIDPAFSVGGDNTAVCV 299


>gi|117621599|ref|YP_853855.1| hypothetical protein BAPKO_2028 [Borrelia afzelii PKo]
 gi|110890985|gb|ABH02150.1| hypothetical protein BAPKO_2028 [Borrelia afzelii PKo]
          Length = 450

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/288 (16%), Positives = 84/288 (29%), Gaps = 43/288 (14%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMS 109
           Q E +  ++ H          T  K   S G   GKT L +++++  +           +
Sbjct: 49  QKEVLFDIESH----------TYSKVIFSGGIASGKTFLASYLLIKKLIENKSFYEQDTN 98

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
              I NS   L      ++ K   +L    + + +S          EL            
Sbjct: 99  NFIIGNSIGLLMTNTIKQIEKICGLLGI-DYQKKKSGQSFCKIAGLELN----------- 146

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                 Y  +  D F      +   ++ +EA+         +             I  +N
Sbjct: 147 -----IYGGKNRDAFSKIRGGNSAIIYVNEATVIHKETL--LEVMKRLRKGKSIIIFDTN 199

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
                 +F   +    + +K Y   T       + F E     Y          + G++ 
Sbjct: 200 PESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIETQEKLYKHFPAYKARVLYGEWV 259

Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
             E + F      E   +++     +   IM  D A   GGD T V  
Sbjct: 260 LNESSLFN-----EMIFNQDYE---FKSPIMYIDPAFSVGGDNTAVCV 299


>gi|222147998|ref|YP_002548955.1| large terminase [Agrobacterium vitis S4]
 gi|221734986|gb|ACM35949.1| large terminase [Agrobacterium vitis S4]
          Length = 459

 Score = 73.4 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/277 (12%), Positives = 73/277 (26%), Gaps = 30/277 (10%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM--SIICIA 114
               +  +  H              +  GRG GKT   A  +  + S        I  + 
Sbjct: 56  RLARSWALLRHPLQAPPEGAWRNWLLMGGRGSGKTRAGAEWVHEIASAGEKSAVRIALVG 115

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            +    +  +   +S    +  H+   E++                              
Sbjct: 116 ETLGDAREVMVDGLSGIARIARHK-RPEVEISRRRL------------------VWPNGA 156

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRR 232
                  +             + DE +     +     +       +  R   + + T R
Sbjct: 157 MAQMFSAEDPESLRGPQFHYAWCDEIAKWKHAEETFDMLQFSLRLGDDPRQ--VITTTPR 214

Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292
                  +   P                +  GF E + +RYG    + R E+ G+  +  
Sbjct: 215 PVPILKRLLADPGTR-LTRLSTFGNACNLAPGFIEALQARYGGT-RLGRQELDGELIEDR 272

Query: 293 VNNFIPHNYIEEAMSREAIDDLYAPLIMGCD-IAGEG 328
            +     + +E+   R +       +++G D  +G G
Sbjct: 273 EDALWRRDRLEQLTVRLSEP--LHRIVVGVDPPSGAG 307


>gi|329735579|gb|EGG71866.1| phage terminase, large subunit, PBSX family [Staphylococcus
           epidermidis VCU028]
          Length = 420

 Score = 73.4 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/291 (11%), Positives = 85/291 (29%), Gaps = 29/291 (9%)

Query: 72  NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131
             +          GRG GK++  + ++   +  R  M+ + +  ++  L  +++ ++   
Sbjct: 21  TKDRKKLNVVAKGGRGSGKSSDISIIIT-QLIMRYPMNAVVVRKTDNTLATSVFEQIKWA 79

Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
           +      H F+++   +             +    +   I  R          +      
Sbjct: 80  IEEQKVSHLFKVKVSPM------------EITYVPRGNRIIFRGAQNPERLKSLKDSRFP 127

Query: 192 GMAVFNDE-ASGTPDIINKSILGFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--I 243
              ++ +E A    +    +I                +  + N   R   W    +    
Sbjct: 128 FSIMWIEELAEFKTEDEVTTITNSMLRGELDDGLFYKFFFSYNPPKRKQSWVNKKYETSF 187

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
             ++   +         I   F +   S    +    R E +G+         +P N ++
Sbjct: 188 QPDNTFVHHSTYLDNPFISKQFIQEAESTKERNELRYRWEYMGEAIGSG---VVPFNNLQ 244

Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGN----IIEHIFDWSA 350
                + + D +  +  G D  G   D    V    +    +I  I ++  
Sbjct: 245 IETIPQEMIDGFDNIRNGLDF-GYADDPLAFVRWHYDKKKRVIYAIDEYYG 294


>gi|296445591|ref|ZP_06887546.1| protein of unknown function DUF264 [Methylosinus trichosporium
           OB3b]
 gi|296256836|gb|EFH03908.1| protein of unknown function DUF264 [Methylosinus trichosporium
           OB3b]
          Length = 442

 Score = 73.4 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 74/264 (28%), Gaps = 35/264 (13%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSML 135
           I +GRG GKT   A  +  +   RP         I  I  +   +++ +   VS  L+  
Sbjct: 58  ILSGRGAGKTRAGAEWVKGIARGRPQFATRPLSPIALIGETAADVRDVMIEGVSGILAAH 117

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
                   +S     +                              +           A 
Sbjct: 118 SRSERPLWESSRRRLT------------------FDNGVVAQAFSAEDPESLRGPQFAAA 159

Query: 196 FNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253
           + DE +     +     +       +  R  +    T R       +             
Sbjct: 160 WCDELAKWRYAEETWDMLQFGLRLGDWPRQLVT--TTPRPMPLIKRLLTEN-GVAVTRAK 216

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
                  +   F E ++S+YG    + R E+ G+  +Q  +     + +E A  R     
Sbjct: 217 TRANAANLAPSFLETVLSQYGGT-RLGRQELDGEIVEQRADALWTRDMLERA--RILAPP 273

Query: 314 LYAPLIMGCDI---AGEGGDKTVV 334
               +++  D    +G+  D+  +
Sbjct: 274 PLERIVVAIDPPASSGKRADRCGI 297


>gi|115523910|ref|YP_780821.1| hypothetical protein RPE_1893 [Rhodopseudomonas palustris BisA53]
 gi|115517857|gb|ABJ05841.1| protein of unknown function DUF264 [Rhodopseudomonas palustris
           BisA53]
          Length = 423

 Score = 73.4 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 72/278 (25%), Gaps = 38/278 (13%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSMLPH 137
            GRG GKT   A  +       P         I  +  +E  ++  +   VS  L++ P 
Sbjct: 40  GGRGSGKTRAGAEWIRAQALGLPPFADRPMSRIALVGETEHDVREVMIEGVSGLLAVHPR 99

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
                 Q                                     +             ++
Sbjct: 100 HERPNWQPSRKRLE------------------WKNGAVAQAFSAEDPESLRGPQFSCAWS 141

Query: 198 DEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255
           DE +     +     +          R   + + T R       +   PL      +  T
Sbjct: 142 DEMAKWRYAEATFDMLQFGLRLGPQPRQ--LITTTPRPIALLKRLIADPLS--VVTRAPT 197

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY 315
           R      +      + +    + + R E+ G+  +   +       IE+   R       
Sbjct: 198 RANAFNLAPTFLQSVMKRYDGTRLGRQELDGEIIEDRPDALWSRALIEQC--RVEAAPPL 255

Query: 316 APLIMGCDI---AGEGGDKTVVV---FRRGNIIEHIFD 347
             +++  D    + +  D   +V       N++  + D
Sbjct: 256 RRIVVAVDPPVSSTKRSDACGIVAAGLADNNVVHVLAD 293


>gi|37526791|ref|NP_930135.1| hypothetical protein plu2901 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36786223|emb|CAE15275.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 409

 Score = 73.4 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 65/257 (25%), Gaps = 26/257 (10%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGM----SIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            GRG  KT   A M                I+C       L+ +   EV + +  +P   
Sbjct: 29  GGRGSAKTRTFAMMSAVRAYQAAESGTSGVILCAREFMNSLEESSMEEVKQAIRSIP--- 85

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                        W  +  E           +    +   R +          +  + DE
Sbjct: 86  -------------WLDDYFEIGEKYIRTKNRLVNYVFCGLRHNLDSIKSKARILLAWIDE 132

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTV 258
           A    +   K +     E      W+   N  +            P +     +++    
Sbjct: 133 AESVSETAWKKLRPTVRESGSE-IWVTW-NPEKDGSATDKRLRKKPPKSSIIVEMNYSDN 190

Query: 259 EGIDSGFHEGIISR-YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317
                   E        LD         G + +      + + Y  E+   + +      
Sbjct: 191 PWFPDVLEEERQEDLESLDHSDYAWIWEGAYLENSEKQVLANKYKIESF-PDDLWMQADR 249

Query: 318 LIMGCDIAGEGGDKTVV 334
           L+ G D  G   D + +
Sbjct: 250 LLFGADF-GFARDPSTL 265


>gi|37956903|gb|AAP34169.1| gene 19 [Enterobacteria phage T7]
          Length = 586

 Score = 73.4 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 45/386 (11%), Positives = 97/386 (25%), Gaps = 86/386 (22%)

Query: 19  LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78
           L+ A+    F  F+  F  W     P+     P + Q++  + +    +           
Sbjct: 10  LVVAQLKGDFLAFL--FVLWKALNLPV-----PTKCQIDMAKVLANGDNK---------- 52

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           K  + A RGIGK+ +    ++W +   P + I+ ++ S+ +        +   + +LP  
Sbjct: 53  KFILQAFRGIGKSFITCAFVVWSLWRDPQLKILIVSASKERADANSIF-IKNIIDLLPFL 111

Query: 139 HWFEMQSLSLHPSGWYAEL-----------LEQSMGIDSKHYTITCRTYSEERPDTFVGP 187
              + +         +                   G  +            E P      
Sbjct: 112 SELKPRPGQRDSVISFDVGPANPDHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATM 171

Query: 188 HNTHGMAVFNDEASGT-------------PDIINKSILGFFTE--LNPNRFWIMTSNTRR 232
                +     E +                     ++     +        W       R
Sbjct: 172 GAREKLWTLVQEFAALLKPLSSSRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRTR 231

Query: 233 LNGWFYDIFNIP------LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-- 284
               +Y     P       E+ +            D          YG      +  +  
Sbjct: 232 EENLYYSQRLAPMLRAEYDENPEALAGTPTDPVRFDRDDLRERELEYGKAGFTLQFMLNP 291

Query: 285 ---LGQ-FPQQEVNNFIPHNYIEEA-MSREAIDD-------------------------- 313
                + +P +  +  +    +E+A M  + + +                          
Sbjct: 292 NLSDAEKYPLRLRDAIVAALDLEKAPMHYQWLPNRQNIIEDLPNVGLKGDDLHTYHDCSN 351

Query: 314 ---LYAPLIMGCDIAGEGGDKTVVVF 336
               Y   I+  D +G G D+T    
Sbjct: 352 NSGQYQQKILVIDPSGRGKDETGYAV 377


>gi|295688413|ref|YP_003592106.1| hypothetical protein Cseg_0983 [Caulobacter segnis ATCC 21756]
 gi|295430316|gb|ADG09488.1| protein of unknown function DUF264 [Caulobacter segnis ATCC 21756]
          Length = 445

 Score = 73.1 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 39/296 (13%), Positives = 78/296 (26%), Gaps = 36/296 (12%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
             +   + H     +     +F      GRG GKT   A  ++   +   G  +  +  +
Sbjct: 54  RTLRIREDHQLPPPDPWVTWLF----LGGRGAGKTYAGAAWLIEQATA--GARLALVGPT 107

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
              ++  +    S   ++         ++                             T 
Sbjct: 108 FHDVREVMIEGPSGLKALSLPDEHPRWEASRRRL------------------VWPNGATA 149

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLN 234
                +           A + DE    P        +          R  +    T + +
Sbjct: 150 YAFSAEDPDSLRGPQFHAAWADEFCAWPKPGDTLAMLRFGLRLGADPRLVVT--TTPKPH 207

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294
                +   P          +     +   F   + S YG    +A  E+ G   + +  
Sbjct: 208 RALKVLMAEP-GVSLTRAGTSANAGNLAPAFLRTLESLYGGT-RLAAQELDGVIVETDGG 265

Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCD-IAGEGGDKTVVVF--RRGNIIEHIFD 347
            F   +      +R A  D    +++  D  A  GGD   +V   RR +    + D
Sbjct: 266 LFRAEDLARCRAARPARLD---RVVVAVDPPATAGGDACGIVVVGRRDDRAFVLAD 318


>gi|296141561|ref|YP_003648804.1| terminase [Tsukamurella paurometabola DSM 20162]
 gi|296029695|gb|ADG80465.1| Terminase [Tsukamurella paurometabola DSM 20162]
          Length = 489

 Score = 73.1 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 51/353 (14%), Positives = 87/353 (24%), Gaps = 64/353 (18%)

Query: 29  KNFVMRF--FPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR 86
           + F+     F    KG   +       WQ++    V       V    P          R
Sbjct: 25  ERFLAFADKFLRVPKGTGAKGKLHLRDWQVDVARDVLDSGARTVGIMFP----------R 74

Query: 87  GIGKTTLNAWMMLW-LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
           G GKTTLNA + L+   +   G ++  +A  E Q                         S
Sbjct: 75  GQGKTTLNAAIALYRFFTGGEGANVCVVAVDERQA--------------------GLAFS 114

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
            +        EL  +      + Y  T  +  +  P +         +    DEA     
Sbjct: 115 AARRMVELNEELSARCQIFKDRLYLPTTDSVFQCLPASPTALEGLDYVLALVDEAGVVNR 174

Query: 206 IINKSILGFFTELNPNRFWIMTSNT-------------------RRLNGWFYDIFNIPL- 245
            + + +             +                               +  F+    
Sbjct: 175 DVFEVVQ-LAQGKREKSVLVAIGTPGPNLDDQVLLSLRDYHLEHPDDASLRWREFSAAGF 233

Query: 246 EDWKRYQIDTRT--VEGIDSGFHEGIIS---RYGLDSDVARIEILGQFPQQEVNNFIPHN 300
           ED               +D   H   +             R   L QF      +F+P  
Sbjct: 234 EDHPVDCTHCWELANPALDDFLHRDALVALLPPKTRESTFRRARLCQFAADTEGSFLPAG 293

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVV---VFRRGNIIEHIFDWSA 350
             E   + E +  L A +++  D +    D T +             +  W  
Sbjct: 294 VWEGLSTGEPVP-LGAEVVIALDGS-FSDDTTALLLGTVAAAPHFHPLRVWER 344


>gi|87307615|ref|ZP_01089759.1| hypothetical protein DSM3645_28877 [Blastopirellula marina DSM
           3645]
 gi|87289785|gb|EAQ81675.1| hypothetical protein DSM3645_28877 [Blastopirellula marina DSM
           3645]
          Length = 429

 Score = 73.1 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/287 (11%), Positives = 68/287 (23%), Gaps = 37/287 (12%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P   Q E +     H                +  GR  GKT   A ++  ++        
Sbjct: 26  PLPHQREILRDRHRHKR--------------VICGRRWGKT--GAGLIAAILGHGDPS-- 67

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLH-PSGWYAELLEQSMGIDSKHY 169
                         W  +    ++      F             +A      +  + +  
Sbjct: 68  ---GPGH-------WKGMVDGGTLYWVAPTFAQSKKIERDIMLAFANSGLVYVKSEGRIE 117

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNPNRFWIMTS 228
             +  + + +     V         +  DE +     +   ++    ++    R W M  
Sbjct: 118 HPSGGSITIKTAAAPVSLRGEGLDGMIGDEFAFVRKEVWSDALRPALSD---RRGWSMFL 174

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
            T     W  D  ++   D         T +       E   +   L       E   QF
Sbjct: 175 TTPNGPNWMKDQHDLDGVDPTYKSWQCPTSDNCLIDQAELDSALLDLGQASFDQEYRAQF 234

Query: 289 PQQEVNNFIPHNYIEEA---MSREAIDDLYAPLIMGCDIAGEGGDKT 332
                       Y +           +      ++G D +    DK+
Sbjct: 235 VDVS-GAEFSGLYFQTPKFWFDDWPPESEIRFRVIGLDPSKGKNDKS 280


>gi|114320225|ref|YP_741908.1| hypothetical protein Mlg_1066 [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226619|gb|ABI56418.1| hypothetical protein Mlg_1066 [Alkalilimnicola ehrlichii MLHE-1]
          Length = 463

 Score = 73.1 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 44/294 (14%), Positives = 86/294 (29%), Gaps = 34/294 (11%)

Query: 66  CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC---IANSETQLKN 122
                +       +  +  GR  GK+   A + ++    +     +    +A +     +
Sbjct: 50  LTDRESAPQSAHDELWLVVGRRGGKSNAAALLAVYEACFKDHRDALAPGEVATTRVMAAD 109

Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182
              A           R  F   S  +H +     L+ +    D +   ++ R   E    
Sbjct: 110 RAQA-----------RSVFRYISGLMHANPMLERLIVRE---DRESIELSNRAVIEVGTA 155

Query: 183 TFVGPHNTHGMAVFNDEASGT--------PDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
           +F         AV  DE +             I  ++      LN     I  S+     
Sbjct: 156 SFRTTRGYTFAAVIADEVAFWRSDDSANPDSEIIAAVRPGLATLNGKL--IALSSPYARR 213

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGII-SRYGLDSDVARIEILGQFPQQEV 293
           G  ++ +           +       ++    E ++      D   A  E L +F + +V
Sbjct: 214 GELWENYRRHYGKASPILVAQAPSRTMNPSLPERVVTEAMERDPASAAAEYLAEF-RTDV 272

Query: 294 NNFIPHNYIEEAMSREAIDDLYA---PLIMGCDIAGEGGDK--TVVVFRRGNII 342
             F+    +E A     ++  Y          D AG G D+    +  R G  +
Sbjct: 273 ETFLQREVVEAATRPTPLELPYNKRVTYTAFVDPAGGGADEFTAAIGHREGERV 326


>gi|194100512|ref|YP_002003357.1| gp19 [Yersinia phage Yepe2]
 gi|193201245|gb|ACF15726.1| gp19 [Yersinia phage Yepe2]
          Length = 585

 Score = 73.1 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 44/384 (11%), Positives = 97/384 (25%), Gaps = 88/384 (22%)

Query: 22  AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81
           A+    F  F+  F  W     P     +P + Q++    +    H           K  
Sbjct: 13  AQLKGDFVAFL--FVLWKALNLP-----KPTKCQIDMARTLADGDHK----------KFI 55

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           + A RGIGK+ +    ++W++   P + ++ ++ S+ +        +   + +LP     
Sbjct: 56  LQAFRGIGKSFITCAFVVWVLWRDPQLKVLIVSASKERADANSIF-IKNIIDLLPFLAEL 114

Query: 142 EMQSLSLHPSGWYAELL-EQSMGIDSKHYTITCRTY----------SEERPDTFVGPHNT 190
           + +         +   L +       K   IT +              E P         
Sbjct: 115 KPRPGQRDSVISFDVGLAKPDHSPSVKSVGITGQLTGSRADIIIADDVEVPGNSSTSSAR 174

Query: 191 HGMAVFNDEASGT-------------PDIINKSILGFFTE--LNPNRFWIMTSNTRRLNG 235
             +     E +                     ++     +        W      R    
Sbjct: 175 EKLWTLVTEFAALLKPLPTSRVIYLGTPQTEMTLYKELEDNKGYSTVIWPAQY-PRNDAE 233

Query: 236 WFYDIFNIP-------LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI---- 284
             Y    +         E ++  +         D+         YG      +  +    
Sbjct: 234 ALYYGDRLAPMLKAEYDEGFEILRGQPTDPVRFDTDDLRERELEYGKAGYTLQFMLNPNL 293

Query: 285 -LGQ-FPQQEVNNFI----------PHNYIEEAMSREAIDD------------------- 313
              + +P +  +  +           + ++    +R                        
Sbjct: 294 SDAEKYPLRLRDAIVCAVDPERAPLSYQWLPNRQNRNEELPNVGLKGDDIHSFHTCSSRT 353

Query: 314 -LYAPLIMGCDIAGEGGDKTVVVF 336
             Y   I+  D +G G D+T    
Sbjct: 354 AEYQSKILVIDPSGRGKDETGYAV 377


>gi|308451045|ref|XP_003088525.1| hypothetical protein CRE_30323 [Caenorhabditis remanei]
 gi|308247019|gb|EFO90971.1| hypothetical protein CRE_30323 [Caenorhabditis remanei]
          Length = 490

 Score = 73.1 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/298 (9%), Positives = 73/298 (24%), Gaps = 49/298 (16%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             +S  R +GKT L   +++ L    P ++++  A+       T               H
Sbjct: 54  VQLSIPRQVGKTFLVGMIIIALCILTPRLTVLWTAHRTKTATKTFQTMQGMVKKKKIRGH 113

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
               ++  +          EQ +   +    +          +   G           DE
Sbjct: 114 LAPGRNDGIR-----TANGEQEIRFRNGSVIMFGA------REGGFGRGFDEVDIEVFDE 162

Query: 200 ASGTPDIINKSILGFFTELNPN--RFWIMTSNTRRLNGWFYDIFNI-------------- 243
           A    +   + ++    +                R      +                  
Sbjct: 163 AQILTEKALEDMVAATNQSRQKSGALLFFMGTPPRATDPGEEWLERRNDALEIKPMDQVV 222

Query: 244 ------------------PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
                             P +  +  + +              +      + D  + E +
Sbjct: 223 GLSEDTVYVEFSADKDADPDDMEQLAKANPSFPHRTPLESVMRMRKNL-KNEDSFKREAM 281

Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTV-VVFRRGNII 342
           G +   +    I  + +  +   +        L +  D+A +    +V +  RR + +
Sbjct: 282 GIYDALDSGQVI--DDVSWSRVADPASMPIERLTLAIDVAPDRSMASVSLAGRRADGL 337


>gi|150016242|ref|YP_001308496.1| hypothetical protein Cbei_1360 [Clostridium beijerinckii NCIMB
           8052]
 gi|149902707|gb|ABR33540.1| conserved hypothetical protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 521

 Score = 73.1 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/343 (9%), Positives = 98/343 (28%), Gaps = 49/343 (14%)

Query: 15  LHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSN 74
           +++     +       F   F     K   L  F   ++ Q +FME +            
Sbjct: 1   MNDEEKFLKVWNDPALFSYNFMEIQDKNDELVPFK-FNKLQRDFMENMS----------- 48

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
              +   + + R +G + +     +WL  T P  + + ++ ++   K  ++ ++ +    
Sbjct: 49  --RYNIILKS-RQLGFSVMICAYAIWLAITTPNSNCLMLSYNDES-KRAIFNKLKQIYKS 104

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
           +P                         + +++          S                 
Sbjct: 105 IPEE-----------VKPKLLRNNRSELQMENGSII------SCSPMGNVDKGRGNTCSL 147

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NIPLEDWKRY 251
           ++  E +     + +  +    +   ++  ++   T     +F+ ++         +K +
Sbjct: 148 IWISEFAFVKSDVAEKQILSLEQALNSKGKLIIETTANGLNFFHGMYIKSKRKENFYKSF 207

Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARI----------EILGQFPQQEVNNFIPHNY 301
             +    + +    +E     +    +              E+L  +P   ++      +
Sbjct: 208 FYNYLDGKEMFLEQYEEARDTWKNLHNNVPFSEKDLKDDEKELLKNYPNMTLDVL---CW 264

Query: 302 IEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEH 344
               +   + D       +  D+A      +V   +R + +  
Sbjct: 265 RRLKIENSSEDKFNQEYPISDDVAFISTGASVFDNKRVSTVLQ 307


>gi|227500282|ref|ZP_03930349.1| terminase [Anaerococcus tetradius ATCC 35098]
 gi|227217568|gb|EEI82880.1| terminase [Anaerococcus tetradius ATCC 35098]
          Length = 466

 Score = 73.1 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 38/315 (12%), Positives = 89/315 (28%), Gaps = 49/315 (15%)

Query: 39  GIKGKPLEHFSQ--PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
           G +   +   +   P+ WQ + ++ +       +   +   +       R  GKT +   
Sbjct: 22  GQEAIDIYKKTGLSPYPWQEKLIKDIFAVNDDGLWTHSKFGYAV----PRRNGKTEIVYM 77

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
             LW +    G +II  A+  +    + + ++ K+L  +      + +S+          
Sbjct: 78  AELWFLM--DGKNIIHTAHRISTSH-SSFKKLKKYLEKMGLVDKVDFKSIKAKGQ----- 129

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT 216
                +           RT +                 +  DEA    +    ++    T
Sbjct: 130 -EMIELIKTGGVIQFRTRTETGGL--------GEGFDLLVIDEAQEYTEGQESALKYTVT 180

Query: 217 ELNPNRFWIMTSNTRR--LNGWFYDIFNIPL-------EDWKRYQIDTRTVEGIDSGFHE 267
           + +     +M          G  +  +   +         W  + +   T       +++
Sbjct: 181 DSDNPMI-LMCGTPPTLVSGGTVFSKYRDLILSGGKNHNGWAEWSVSEMTNPYDIDAWYK 239

Query: 268 ------------GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY 315
                        +    G D     I+ LG + +    + I     +  +    +  L 
Sbjct: 240 TNPSMGYKLRERAVEEEIGPDETDFNIQRLGYWVKYNQKSVISKLDWDR-LKLTRLPSLV 298

Query: 316 APLIMGCDIAGEGGD 330
             L +G      G D
Sbjct: 299 GKLHVGI---KYGND 310


>gi|212671426|ref|YP_002308426.1| DNA packaging protein B [Kluyvera phage Kvp1]
 gi|211997270|gb|ACJ14587.1| DNA packaging protein B [Kluyvera phage Kvp1]
          Length = 585

 Score = 73.1 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 45/387 (11%), Positives = 98/387 (25%), Gaps = 88/387 (22%)

Query: 19  LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78
           L+ A+    F  F+  F  W     P     +P + Q++    +    H           
Sbjct: 10  LIVAQLKGDFVAFL--FVLWKALNLP-----KPTKCQIDMARTLANGDHK---------- 52

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           K  + A RGIGK+ +    ++W++   P + ++ ++ S+ +        +   + +LP  
Sbjct: 53  KFILQAFRGIGKSFITCAFVVWVLWRDPQLKVLIVSASKERADANSIF-IKNIIDLLPFL 111

Query: 139 HWFEMQSLSLHPSGWYAELL-EQSMGIDSKHYTITCRTY----------SEERPDTFVGP 187
              + +         +   L +       K   IT +              E P      
Sbjct: 112 AELKPRPGQRDSVISFDVGLAKPDHSPSVKSVGITGQLTGSRADIIIADDVEVPGNSSTS 171

Query: 188 HNTHGMAVFNDEASGT-------------PDIINKSILGFFTE--LNPNRFWIMTSNTRR 232
                +     E +                     ++     +        W      R 
Sbjct: 172 SAREKLWTLVTEFAALLKPLPTSRVIYLGTPQTEMTLYKELEDNKGYSTVIWPAQY-PRN 230

Query: 233 LNGWFYDIFNIP-------LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI- 284
                Y    +         E ++  +         D          YG      +  + 
Sbjct: 231 DAEALYYGDRLAPMLKAEYDEGFELLRGQPTDPVRFDMDDLRERELEYGKAGYTLQFMLN 290

Query: 285 ----LGQ-FPQQEVNNFI----------PHNYIEEAMSREAIDD---------------- 313
                 + +P +  +  +           + ++    +R                     
Sbjct: 291 PNLSDAEKYPLRLRDAIVCAVDTERAPLSYQWLPNRQNRNEELPNVGLKGDDIHSFHVCS 350

Query: 314 ----LYAPLIMGCDIAGEGGDKTVVVF 336
                Y   I+  D +G G D+T    
Sbjct: 351 SKTAEYQQKILVIDPSGRGKDETGYAV 377


>gi|330507947|ref|YP_004384375.1| phage terminase, large subunit, PBSx family [Methanosaeta concilii
           GP-6]
 gi|328928755|gb|AEB68557.1| phage terminase, large subunit, PBSx family [Methanosaeta concilii
           GP-6]
          Length = 422

 Score = 73.1 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/267 (13%), Positives = 74/267 (27%), Gaps = 30/267 (11%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            + V    +     P        + R   KT      +L  I T P  +I+ + N+ T L
Sbjct: 5   ELPVGKQRDFILEEPARINLLYGSVRST-KTWSVNIKILKDILTLPTGNILFVGNTGTSL 63

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
              +   +   +                    +     ++   I  +   I       + 
Sbjct: 64  YRNVLTPIKDLVG----------------EKNFELRAGKKECEIFGRTVWIEG----ADN 103

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
             ++        +  + DE +  P+     +L   ++     +  +T N      + Y  
Sbjct: 104 TSSYKKIEGESLLRAYVDEGTTIPENFTNMLLSRLSDKGACLY--LTCNPETPRNYIYRN 161

Query: 241 FNIPLED--WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIP 298
           +    ++   K ++        +   +   +   Y   +      ILG +   E   F  
Sbjct: 162 WIARQDELNIKVWKFTLDDNPYLPLEYKRDLEKEYPKGTVFYDRFILGNWVAAEGRVF-- 219

Query: 299 HNYIEEAMSREAIDDLYAP--LIMGCD 323
                  M  E       P  L +G D
Sbjct: 220 -GLFARGMHCEVPPATLRPKELRIGAD 245


>gi|37956745|gb|AAP34014.1| gene 19 [Enterobacteria phage T7]
          Length = 586

 Score = 73.1 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 45/386 (11%), Positives = 97/386 (25%), Gaps = 86/386 (22%)

Query: 19  LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78
           L+ A+    F  F+  F  W     P+     P + Q++  + +    +           
Sbjct: 10  LVVAQLKGDFVAFL--FVLWKALNLPV-----PTKCQIDMAKVLANGDNK---------- 52

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           K  + A RGIGK+ +    ++W +   P + I+ ++ S+ +        +   + +LP  
Sbjct: 53  KFILQAFRGIGKSFITCAFVVWSLWRDPQLKILIVSASKERADANSIF-IKNIIDLLPFL 111

Query: 139 HWFEMQSLSLHPSGWYAEL-----------LEQSMGIDSKHYTITCRTYSEERPDTFVGP 187
              + +         +                   G  +            E P      
Sbjct: 112 SELKPRPGQRDSVISFDVGPANPDHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATM 171

Query: 188 HNTHGMAVFNDEASGT-------------PDIINKSILGFFTE--LNPNRFWIMTSNTRR 232
                +     E +                     ++     +        W       R
Sbjct: 172 GAREKLWTLVQEFAALLKPLPSSRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRTR 231

Query: 233 LNGWFYDIFNIP------LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-- 284
               +Y     P       E+ +            D          YG      +  +  
Sbjct: 232 EENLYYSQRLAPMLRAEYDENPEALAGTPTDPVRFDRDDLRERELEYGKAGFTLQFMLNP 291

Query: 285 ---LGQ-FPQQEVNNFIPHNYIEEA-MSREAIDD-------------------------- 313
                + +P +  +  +    +E+A M  + + +                          
Sbjct: 292 NLSDAEKYPLRLRDAIVAALDLEKAPMHYQWLPNRQNIIEDLPNVGLKGDDLHTYHDCSN 351

Query: 314 ---LYAPLIMGCDIAGEGGDKTVVVF 336
               Y   I+  D +G G D+T    
Sbjct: 352 NLGQYQQKILVIDPSGRGKDETGYAV 377


>gi|37956850|gb|AAP34117.1| gene 19 [Enterobacteria phage T7]
          Length = 586

 Score = 73.1 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 45/386 (11%), Positives = 97/386 (25%), Gaps = 86/386 (22%)

Query: 19  LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78
           L+ A+    F  F+  F  W     P+     P + Q++  + +    +           
Sbjct: 10  LVVAQLKGDFVAFL--FVLWKALNLPV-----PTKCQIDMAKVLANGDNK---------- 52

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           K  + A RGIGK+ +    ++W +   P + I+ ++ S+ +        +   + +LP  
Sbjct: 53  KFILQAFRGIGKSFITCAFVVWSLWRDPQLKILIVSASKERADANSIF-IKNIIDLLPFL 111

Query: 139 HWFEMQSLSLHPSGWYAEL-----------LEQSMGIDSKHYTITCRTYSEERPDTFVGP 187
              + +         +                   G  +            E P      
Sbjct: 112 SELKPRPGQRDSVISFDVGPANPDHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATM 171

Query: 188 HNTHGMAVFNDEASGT-------------PDIINKSILGFFTE--LNPNRFWIMTSNTRR 232
                +     E +                     ++     +        W       R
Sbjct: 172 GAREKLWTLVQEFAALLKPLSSSRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRTR 231

Query: 233 LNGWFYDIFNIP------LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-- 284
               +Y     P       E+ +            D          YG      +  +  
Sbjct: 232 EENLYYSQRLAPMLRAEYDENPEALAGTPTDPVRFDRDDLRERELEYGKAGFTLQFMLNP 291

Query: 285 ---LGQ-FPQQEVNNFIPHNYIEEA-MSREAIDD-------------------------- 313
                + +P +  +  +    +E+A M  + + +                          
Sbjct: 292 NLSDAEKYPLRLRDAIVAALDLEKAPMHYQWLPNRQNIIEDLPNVGLKGDDLHTYHDCSN 351

Query: 314 ---LYAPLIMGCDIAGEGGDKTVVVF 336
               Y   I+  D +G G D+T    
Sbjct: 352 NSGQYQQKILVIDPSGRGKDETGYAV 377


>gi|9627482|ref|NP_042010.1| DNA maturation protein [Enterobacteria phage T7]
 gi|137615|sp|P03694|VDMB_BPT7 RecName: Full=DNA maturase B; AltName: Full=DNA-packaging protein
           B; AltName: Full=GP19
 gi|579206|emb|CAA24440.1| unnamed protein product [Enterobacteria phage T7]
 gi|37956692|gb|AAP33962.1| gene 19 [Enterobacteria phage T7]
 gi|265525013|gb|ACY75876.1| DNA maturation protein [Enterobacteria phage T7]
          Length = 586

 Score = 73.1 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 45/386 (11%), Positives = 97/386 (25%), Gaps = 86/386 (22%)

Query: 19  LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78
           L+ A+    F  F+  F  W     P+     P + Q++  + +    +           
Sbjct: 10  LVVAQLKGDFVAFL--FVLWKALNLPV-----PTKCQIDMAKVLANGDNK---------- 52

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           K  + A RGIGK+ +    ++W +   P + I+ ++ S+ +        +   + +LP  
Sbjct: 53  KFILQAFRGIGKSFITCAFVVWSLWRDPQLKILIVSASKERADANSIF-IKNIIDLLPFL 111

Query: 139 HWFEMQSLSLHPSGWYAEL-----------LEQSMGIDSKHYTITCRTYSEERPDTFVGP 187
              + +         +                   G  +            E P      
Sbjct: 112 SELKPRPGQRDSVISFDVGPANPDHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATM 171

Query: 188 HNTHGMAVFNDEASGT-------------PDIINKSILGFFTE--LNPNRFWIMTSNTRR 232
                +     E +                     ++     +        W       R
Sbjct: 172 GAREKLWTLVQEFAALLKPLPSSRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRTR 231

Query: 233 LNGWFYDIFNIP------LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-- 284
               +Y     P       E+ +            D          YG      +  +  
Sbjct: 232 EENLYYSQRLAPMLRAEYDENPEALAGTPTDPVRFDRDDLRERELEYGKAGFTLQFMLNP 291

Query: 285 ---LGQ-FPQQEVNNFIPHNYIEEA-MSREAIDD-------------------------- 313
                + +P +  +  +    +E+A M  + + +                          
Sbjct: 292 NLSDAEKYPLRLRDAIVAALDLEKAPMHYQWLPNRQNIIEDLPNVGLKGDDLHTYHDCSN 351

Query: 314 ---LYAPLIMGCDIAGEGGDKTVVVF 336
               Y   I+  D +G G D+T    
Sbjct: 352 NSGQYQQKILVIDPSGRGKDETGYAV 377


>gi|163850863|ref|YP_001638906.1| hypothetical protein Mext_1434 [Methylobacterium extorquens PA1]
 gi|163662468|gb|ABY29835.1| protein of unknown function DUF264 [Methylobacterium extorquens
           PA1]
          Length = 458

 Score = 72.7 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 81/290 (27%), Gaps = 35/290 (12%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTR------PGMS 109
             +EA  +H   +     P  +   A+  GRG GKT   A  +  L          P   
Sbjct: 47  RLLEADWLHLARHDQLPPPGNWTTWAVIGGRGSGKTRTGAEWVRGLAHGDPVFTPEPVER 106

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I  +  +   +++ +    S  L++                 G    + + S     +  
Sbjct: 107 IALVGETFADVRDVMIEGPSGLLALPRL--------------GGAPPVWQPSRR---RVV 149

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMT 227
                       +           AV++DE +     +     I          R  +  
Sbjct: 150 FGNGAVALAFSAEEPDSLRGPQFGAVWSDEVAKWREAEATYDMIQFGLRLGTHPRGLVT- 208

Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
             T R       +   P              + +   F E ++ RY     + R E+ G+
Sbjct: 209 -TTPRPVPLIRRLLADPRT-VVTRSRTADNAQNLAPSFLEEVVGRYAGT-RLRRQELDGE 265

Query: 288 FPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVV 334
             +   +     + IE A   EA       + +  D    +  G D   +
Sbjct: 266 LIEDRPDALWTRDAIERARVSEAPPLQ--RIAVAIDPPASSRVGADACGI 313


>gi|187476925|ref|YP_784949.1| phage terminase large subunit [Bordetella avium 197N]
 gi|115421511|emb|CAJ48020.1| Putative phage terminase large subunit [Bordetella avium 197N]
          Length = 512

 Score = 72.7 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 58/222 (26%), Gaps = 47/222 (21%)

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDII--NKSILGFFTELNPNRFWIMTSNTRRLN-- 234
           + P             +  DEA+   +            T+       +MT N       
Sbjct: 129 DNPGDENRWRGRPHDLIVLDEATELREHQARFVLGWNRTTKAGQRCRVLMTFNPPTTVEG 188

Query: 235 --------GWFYDIFNIPLEDWKRYQIDTRTVEGIDSG------------------FHEG 268
                    W       P +  +         + ++                    F   
Sbjct: 189 RWVVEYFAPWLDPKHPHPAKPGELRWFAVIDGKEVEVEGGAPFAHNGETIVPRSRTFIPS 248

Query: 269 IISR-------------YGLDSDVARIEILGQFPQQEVN---NFIPHNYIEEAMSREAID 312
            I+                L   +    + G F     +     IP  ++E A +R    
Sbjct: 249 RIADNPFLMGTGYESVLQSLPEPLRSQMLYGDFNAGIEDDPWQVIPTAWVEAAQARWKRP 308

Query: 313 DLYAPLI-MGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
           D  AP+  +G D+A  G DKT++  R G   +    +  K  
Sbjct: 309 DRLAPMDSLGLDVARGGRDKTILARRHGWWFDEPLVYPGKDT 350


>gi|326536146|ref|YP_004300581.1| gp19 [Enterobacteria phage 285P]
 gi|256861535|gb|ACV32491.1| gp19 [Enterobacteria phage 285P]
          Length = 585

 Score = 72.7 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 45/387 (11%), Positives = 98/387 (25%), Gaps = 88/387 (22%)

Query: 19  LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78
           L+ A+    F  F+  F  W     P     +P + Q++    +    H           
Sbjct: 10  LIVAQLKGDFVAFL--FVLWKALNLP-----KPTKCQIDMARTLANGDHK---------- 52

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           K  + A RGIGK+ +    ++W++   P + ++ ++ S+ +        +   + +LP  
Sbjct: 53  KFILQAFRGIGKSFITCAFVVWVLWRDPQLKVLIVSASKERADANSIF-IKNIIDLLPFL 111

Query: 139 HWFEMQSLSLHPSGWYAELL-EQSMGIDSKHYTITCRTY----------SEERPDTFVGP 187
              + +         +   L +       K   IT +              E P      
Sbjct: 112 SELKPRPGQRDSVISFDVGLAKPDHSPSVKSVGITGQLTGSRADIIIADDVEVPGNSSTS 171

Query: 188 HNTHGMAVFNDEASGT-------------PDIINKSILGFFTE--LNPNRFWIMTSNTRR 232
                +     E +                     ++     +        W      R 
Sbjct: 172 SAREKLWTLVTEFAALLKPLPTSRVIYLGTPQTEMTLYKELEDNKGYSTVIWPAQY-PRN 230

Query: 233 LNGWFYDIFNIP-------LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI- 284
                Y    +         E ++  +         D          YG      +  + 
Sbjct: 231 DAEALYYGDRLAPMLKTEYDEGFELLRGQPTDPVRFDMDDLRERELEYGKAGYTLQFMLN 290

Query: 285 ----LGQ-FPQQEVNNFI----------PHNYIEEAMSREAIDD---------------- 313
                 + +P +  +  +           + ++    +R                     
Sbjct: 291 PNLSDAEKYPLRLRDAIVCAVDPERAPLSYQWLPNRQNRNEELPNVGLKGDDIHAFHTCS 350

Query: 314 ----LYAPLIMGCDIAGEGGDKTVVVF 336
                Y   I+  D +G G D+T    
Sbjct: 351 SRTAEYQSKILVIDPSGRGKDETGYAV 377


>gi|99080642|ref|YP_612796.1| hypothetical protein TM1040_0801 [Ruegeria sp. TM1040]
 gi|99036922|gb|ABF63534.1| hypothetical protein TM1040_0801 [Ruegeria sp. TM1040]
          Length = 416

 Score = 72.7 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 79/283 (27%), Gaps = 29/283 (10%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           A   G G GKT +    +       P       A +   +++T W  V +    L     
Sbjct: 24  AYVGGFGSGKTYVGCLDLGLFAGQHPKTVQGYFAPTYRDIRDTFWPTVDEAAHSLGF--- 80

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
               +  +  +    E          + Y  T    S + P                DE 
Sbjct: 81  ----TTKVKSADKEVE------FYRGRSYYGTTICRSMDDPGG---IVGFKIARALVDEI 127

Query: 201 SGTPDIINKSILGFFTELNPNRF-----WIMTSNTRRLNGWFYDIF-NIPLEDWKRYQID 254
                   ++                   I  + T     + YD F   P  ++   Q  
Sbjct: 128 DILSKDKAQAAWRKIIARMRLVLPGVVNGIGVTTTPEGFRFVYDSFKREPKSNYSMVQAS 187

Query: 255 TRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
           T   E  +   +   ++  Y  +  + +  ++G+F           +Y            
Sbjct: 188 TYENEAFLPPDYISTLLEDYPEE--LIKAYLMGEFVNLTSGTVY-RSYDRLRHRSTQSIQ 244

Query: 314 LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQET 356
              PL +G D    G   +VV  +RG     + +     +Q+T
Sbjct: 245 PREPLHIGQDF-NVGNMASVVFVQRGEDWHAVDELQG--LQDT 284


>gi|310286612|ref|YP_003937870.1| phage terminase [Bifidobacterium bifidum S17]
 gi|309250548|gb|ADO52296.1| phage terminase [Bifidobacterium bifidum S17]
          Length = 483

 Score = 72.7 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 74/295 (25%), Gaps = 46/295 (15%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            RWQ +    +             +    A+S  R +GKT         +   +P  +++
Sbjct: 45  DRWQDDLCRLMLA--KRADGEYAASAGGVAMSLCRQVGKTFTVGTNAAIMCLLQPDFTVL 102

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A+     +    AE  K +  +  +        ++  +       ++S+   +    +
Sbjct: 103 WTAH-----RTRTSAETFKSMQAIVRQPGLTRHVKAIRRANG-----QESIEFANGSRIL 152

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
                                     DEA    +     ++   T    N   +      
Sbjct: 153 FGAREQGFGRG------FAGIDMEIFDEAQILTEKALDDMVPA-TNAAKNPLIVFMGTPP 205

Query: 232 RLNGWFY-----------------------DIFNIPLEDWKRYQIDTRTVEGIDSGFHEG 268
           R N                           D    P +  +  + +              
Sbjct: 206 RPNDPGDVFKLKRSQGLANEDGMTYVEFSADRDADPHDRNQWAKANPSYPTRTKPAAMLR 265

Query: 269 IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
           ++   G DS   R E LG + +      I  +  ++A            +  G D
Sbjct: 266 MLKNLGEDS--FRREALGIWDETTDRRAIDPDQWQQA--ETGERRPGGWVAFGVD 316


>gi|21241826|ref|NP_641408.1| phage-related DNA maturase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21107205|gb|AAM35944.1| phage-related DNA maturase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 526

 Score = 72.3 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/373 (11%), Positives = 78/373 (20%), Gaps = 81/373 (21%)

Query: 27  SFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR 86
            F+NF      W     P      P   Q +    +       +           + A R
Sbjct: 17  DFRNFAFDL--WTHLALP-----SPTPVQYDICSYLQHGPRRRM-----------VQAFR 58

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G+GK+ L A  + WL+   P   I+ ++ S+ +             +  P  H       
Sbjct: 59  GVGKSFLTAGYVCWLLWKDPQHKIMVVSASKERADAFSVFVKQIIETFEPLSHLRPRSDQ 118

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTY----------SEERPDTFVGPHNTHGMAVF 196
                 +             K   IT +              E             +A  
Sbjct: 119 RNSNLAFDVGPALPDQSPSVKSVGITGQLTGSRANTIIPDDIEVVKNSQTIVQREKLAEL 178

Query: 197 NDEASGT------------PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF--- 241
             E                P                 R W             Y      
Sbjct: 179 IKEFDAVLKPGGQVIYLGTPQTEESLYNKLPERGYDIRIWPARFPKNMKQRVAYGAMLAP 238

Query: 242 --NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG------QFPQQEV 293
                 +D +            D        + YG      +  +        ++P +  
Sbjct: 239 VIAAAFDDNQALAWTPTDSRRFDEKDLMEREASYGRAGFALQFMLDTTLSDAEKYPLKLS 298

Query: 294 NNF------------------------------IPHNYIEEAMSREAIDDLYAPLIMGCD 323
           +                                   +   + M      + +   +M  D
Sbjct: 299 DFIVMDVDREVAPIRVVWSSGKQHVVEELPSVGFSGDRWHQPMYVAPEMEEFTGSLMTVD 358

Query: 324 IAGEGGDKTVVVF 336
            +G GGD+T    
Sbjct: 359 PSGRGGDETGFCV 371


>gi|146310462|ref|YP_001175536.1| hypothetical protein Ent638_0800 [Enterobacter sp. 638]
 gi|145317338|gb|ABP59485.1| conserved hypothetical protein [Enterobacter sp. 638]
          Length = 445

 Score = 72.3 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/366 (12%), Positives = 100/366 (27%), Gaps = 44/366 (12%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIKGKP--LEHFSQ---- 50
           P      +   + L  +  ++E + + K F           WG+   P  L++       
Sbjct: 12  PDYQLVFEWRMERLQRIRQNSEMLPALKQFYRTNPAQFIIDWGMTTDPRNLDYGLPATIP 71

Query: 51  ----PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
               P   Q E++  +     S  +              R +G +  +  +   L     
Sbjct: 72  FLLFPR--QEEWINWIMDRRSSLEHGLTEKS--------REMGLSWTSIGLACSLCLFNK 121

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
            M I   +  E  + ++     + +           ++         +A  +        
Sbjct: 122 EMVIGFGSRKEEYV-DSTGDPKALFWKARKFVETLPVEFRGSWDEKKHAPYMRVEFPD-- 178

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
                       +                F DEA+     +        T        I 
Sbjct: 179 -------TGAVIKGEAGDNIGRGDRTTLYFVDEAAFLQRPLLIDAALSQTTRCR----ID 227

Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
            S+   ++  F    +        +    R+    D+ ++     +   +  +   E+  
Sbjct: 228 LSSVNGMSNPFAQKRH--SGKIPVFTFHWRSDPRKDNEWYRKECEKI-DNPVIVAQELDL 284

Query: 287 QFPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEH 344
            +        IP  +++ A+              +   DIA EG DK     R G +++ 
Sbjct: 285 NYQASAEGILIPSEWVQAAVDAHIKLGIQPSGQRLGSMDIADEGKDKNGFSSRYGFLLQS 344

Query: 345 IFDWSA 350
           + +WS 
Sbjct: 345 VHEWSG 350


>gi|283780022|ref|YP_003370777.1| hypothetical protein Psta_2246 [Pirellula staleyi DSM 6068]
 gi|283438475|gb|ADB16917.1| conserved hypothetical protein [Pirellula staleyi DSM 6068]
          Length = 465

 Score = 72.3 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/297 (13%), Positives = 86/297 (28%), Gaps = 51/297 (17%)

Query: 68  SNVNNSNPTIFKCAI-SAGRGIGKTTLNAWMMLW---------LISTRPGMSIICIANSE 117
            N +      F  A+   GR  GK+ + A +  +          +ST     +   A ++
Sbjct: 53  RNPHKLPDDGFNTALFLTGRRSGKSRIAAVIASYEAALAGRESRLSTGERGVVAVCAPTK 112

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
            Q +      V  ++                    + + +L   +  +++          
Sbjct: 113 YQAR-----VVKDYIRGC-----------------FTSPMLSGEVTQETQEGFTLANGVR 150

Query: 178 EER-PDTFVGPHNTHGMAVFNDEASGT----------PDIINKSILGFFTELNPNRFWIM 226
                  +        +A   DEA+               + ++I      +      I 
Sbjct: 151 IAVLAGDWRTIRGYTLLAAIVDEAAFFGYDAESKVKSDTELIRAIKPGLATVGGKL--IA 208

Query: 227 TSNTRRLNGWFYDIF--NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
            S+     GW +  +  N    + K    +  +           I      D   A+ E 
Sbjct: 209 ISSPYARKGWCFKTYQRNFGNNEGKTLVWNCPSKTMNPKLPQSVIDEALAEDLASAKAEY 268

Query: 285 LGQFPQQEVNNFIPHNYIEEAM---SREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
           LG+F + +V+ F+P   + + +     E + +         D++G   D   +    
Sbjct: 269 LGEF-RDDVSLFLPREVVAKLVVPGRYELLPNQKHRYFGFADLSGGRSDDAALAIAH 324


>gi|152969966|ref|YP_001335075.1| hypothetical protein KPN_01413 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150954815|gb|ABR76845.1| hypothetical protein KPN_01413 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 434

 Score = 72.3 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/301 (15%), Positives = 87/301 (28%), Gaps = 34/301 (11%)

Query: 61  AVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
           A+    +          +K  A  AG G GKT +    +   +   P ++    A +  Q
Sbjct: 2   AIAPTLNIPQAKFLAMQYKFKAYVAGFGSGKTWVGCGGICKGMWEHPKINQGYFAPTYPQ 61

Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
           +++  +  V +                    +    E  ++      + Y  T    S E
Sbjct: 62  IRDIFYPTVEEVAHDWG-------------LNVKINEGNKEVHFYAGRQYRGTTICRSME 108

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFT-ELNPNRFWIMTSNTRRLN 234
           +P                DE    P     +  + I+      +   R  I  + T    
Sbjct: 109 KP---QTIVGFKIGNALIDELDVMPAKKAQLAWRKIIARMRYNVAGLRNGIDVTTTPEGF 165

Query: 235 GWFYDIFNIPLED-------WKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILG 286
            + Y  F   + D       +   Q  T   E  +   +   ++  Y    ++ +  + G
Sbjct: 166 KFVYQQFAKAVRDKPSLSTLYGLVQASTFDNEKNLPPDYIPSLMESY--PPELIKAYLRG 223

Query: 287 QFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
           QF              +    RE  +    PL +G D    G    VV   R  +   + 
Sbjct: 224 QFTNLTSGTIYHQFDRKLNNCRE-EEQPGEPLYIGMDF-NVGKMAGVVHVLRLGLPFAVT 281

Query: 347 D 347
           +
Sbjct: 282 E 282


>gi|170748408|ref|YP_001754668.1| hypothetical protein Mrad2831_1990 [Methylobacterium radiotolerans
           JCM 2831]
 gi|170654930|gb|ACB23985.1| conserved hypothetical protein [Methylobacterium radiotolerans JCM
           2831]
          Length = 478

 Score = 72.3 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/304 (13%), Positives = 74/304 (24%), Gaps = 45/304 (14%)

Query: 60  EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN-------AWMMLWLISTRPGMSI-- 110
            A+              + +     GR  GK+          A ++ +     PG  I  
Sbjct: 50  RAIFTALTGREREPERPVDELWGIVGRRGGKSRAFSVLGAYLAGLVDYSAVQAPGERIKL 109

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
             +A++  Q        +  +      R   +    S          +E           
Sbjct: 110 PIMASTTVQAAKIFSYMLGVFEHSAELRDMVDGDPTSETIRLLSGVDIEV---------- 159

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-------PDI-INKSILGFFTELNPNR 222
                    RP  +             DE +         PD  I  ++           
Sbjct: 160 ---------RPANYKTIRGETLAGCLADEVAFWHLENSANPDTLILDAVRPGLATTGGPL 210

Query: 223 FWIMTSNTRRLNGWFYDIFNI---PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279
              + S+     G  Y        P  D     +   +     S     +   Y  D   
Sbjct: 211 --CVLSSPYARKGELYRTHQRDFGPSGDPAVLVLRAPSQTMNPSLDPAVVKRAYTRDPAA 268

Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREAI---DDLYAPLIMGCDIAGEGGDKTVVVF 336
           A  E   +F + +V  FI    ++  M+ + +             CD +G G D   +  
Sbjct: 269 ASAEYGAEF-RADVEAFISLEAVQACMAGDLLERAPAPGLTYQAFCDPSGGGADSMTLAI 327

Query: 337 RRGN 340
               
Sbjct: 328 GHAE 331


>gi|160899533|ref|YP_001565115.1| PBSX family phage terminase large subunit [Delftia acidovorans
           SPH-1]
 gi|160365117|gb|ABX36730.1| phage terminase, large subunit, PBSX family [Delftia acidovorans
           SPH-1]
          Length = 414

 Score = 72.3 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 64/268 (23%), Gaps = 31/268 (11%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM----SIICIANSETQLKNTLWAEV 128
           S    ++CA   GRG  KT   A M                I+        L  +   E+
Sbjct: 17  SGEARYRCA-HGGRGSAKTRSFAMMTAVRAYMFAEAGVSGVILGAREYMNSLSESSMEEI 75

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
            + +  +P                W     E                ++  R +      
Sbjct: 76  KQAIRSVP----------------WLDAYFEIGEQYIRTKNRRVSYVFAGLRHNLDSIKS 119

Query: 189 NTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLED 247
               +  + DEA    ++  + +     E      W+   N  +        F   P  +
Sbjct: 120 KARILIAWVDEAESVSEVAWQKLAPTVREQGSE-IWVTW-NPEKDGSPTDKRFRKEPPPN 177

Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306
            K  +++            +   +     D         G + +      +   Y     
Sbjct: 178 SKVVELNYSDNPWFPEVLDQERQADRDRLDDQTYAWVWDGAYRENSDAQILSGKYRVAEF 237

Query: 307 SREAIDD-LYAPLIMGCDIAGEGGDKTV 333
             +   D  Y  L  G        D T 
Sbjct: 238 EPQPGWDGPYFGLDWG-----FSQDPTA 260


>gi|126443353|ref|YP_001063348.1| hypothetical protein BURPS668_A2354 [Burkholderia pseudomallei 668]
 gi|126222844|gb|ABN86349.1| conserved hypothetical protein [Burkholderia pseudomallei 668]
          Length = 490

 Score = 72.3 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/322 (11%), Positives = 77/322 (23%), Gaps = 46/322 (14%)

Query: 43  KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102
             L H   P R+Q      +       ++            A R  GK  +   M+ W  
Sbjct: 8   IELPHNWTPRRYQGRLWNYLIGGGKRAIDI-----------AHRRWGKDEV---MLHWTA 53

Query: 103 STRPGM--SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
                   +   +    TQ +  +W  V+                       +   + ++
Sbjct: 54  VAAHDRVANYWHMLPKATQARKAIWTAVN------------PHTGKRRIDEAFPEAIRKR 101

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220
           +   D         T+     D +     +    +   E +     +   +     E   
Sbjct: 102 TRDQDMFIEFNNGSTWQVLGSDNYDNYVGSPPAGIVLSEWALCNPAVWAYLKPILDENGG 161

Query: 221 NRFWIMTSNTRRLNGWFYDI--FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRY----- 273
              W     T R     + +    +    W     +            E   + Y     
Sbjct: 162 ---WAAFITTPRGKNHAHKMLQMALANPKWFAEVSNVLKTGRFSLAELEEQRAEYRALYG 218

Query: 274 -GLDSDVARIEILGQFPQQEVNNFIPHNYI---EEAMSREAIDDLYAPLIMGCDIAGEGG 329
                 +   E++  F    +  +          +        D   P+I   D+     
Sbjct: 219 EEQGDAMFEQELMCSFEAAILGAYYGKEMAAAERDGRIGRVPHDPNLPVITVWDLGH--S 276

Query: 330 DKTVVVFRRGNI--IEHIFDWS 349
           D T + F + +   I  I  + 
Sbjct: 277 DDTSIWFAQVHWGEIRLIDHYR 298


>gi|114707517|ref|ZP_01440413.1| Phage DNA Packaging Protein [Fulvimarina pelagi HTCC2506]
 gi|114537076|gb|EAU40204.1| Phage DNA Packaging Protein [Fulvimarina pelagi HTCC2506]
          Length = 448

 Score = 72.3 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 68/250 (27%), Gaps = 35/250 (14%)

Query: 84  AGRGIGKTTLNAWMMLWLIS------TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
            GRG GKT   A  +  L        + P   I  +A +    +  +    S   +++ +
Sbjct: 68  GGRGSGKTRAGAEWITGLALGLSPFASLPHRRIALVAETLADAREVMIEGESGLKAIVGN 127

Query: 138 -RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
            R  FE+    L                          T      +           A +
Sbjct: 128 ERPVFEVTRRRL--------------------VFANGATAQIFSSEDPDSIRGYQFDAAW 167

Query: 197 NDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254
            DE      P+    +++         R   + + T R       +   P          
Sbjct: 168 GDELGKWVKPEESFDNLMLALRLGERPR--ALFTTTPRNVPILKRLMADPQTA-VTRMRT 224

Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314
              VE +  GF E +  RY       R E+ G+      +       +E +    A    
Sbjct: 225 AENVENLAPGFLEAMARRYDGT-RFGRQELDGELLDDRKDGLFERALVERSRVTNAPP-- 281

Query: 315 YAPLIMGCDI 324
              +++  D 
Sbjct: 282 LKRIVVAVDP 291


>gi|253991059|ref|YP_003042415.1| phage terminase large subunit [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782509|emb|CAQ85673.1| similar to phage terminase large subunit [Photorhabdus asymbiotica]
          Length = 411

 Score = 72.3 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 64/257 (24%), Gaps = 26/257 (10%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGM----SIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            GRG  KT   A M                I+C       L+ +   EV + +  +P   
Sbjct: 29  GGRGSAKTRTFAMMSAVRAYQAAESGTSGVILCAREFMNSLEESSMEEVKQAIRSIP--- 85

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                        W  +  +           +    +   R +          +  + DE
Sbjct: 86  -------------WLDDYFDIGEKYIRTKNRLVNYVFCGLRHNLDSIKSKARILLAWVDE 132

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY-QIDTRTV 258
           A    +I  K +     E      W+   N  +        F           +++    
Sbjct: 133 AESVSEIAWKKLRPTVRESGSE-IWVTW-NPEKDGSATDKRFRKKPPRSSIIVEMNYSDN 190

Query: 259 EGIDSGFHEGIISR-YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317
                   E        L+         G + +      + + Y  E+   + +      
Sbjct: 191 PWFPDVLEEERQEDLESLEHSDYAWIWEGAYLENSEKQVLANKYKIESF-PDDLWMKADR 249

Query: 318 LIMGCDIAGEGGDKTVV 334
           L+ G D  G   D   +
Sbjct: 250 LLFGADF-GFAKDPNTL 265


>gi|194100300|ref|YP_002003498.1| gp19 [Enterobacteria phage BA14]
 gi|193201295|gb|ACF15775.1| gp19 [Enterobacteria phage BA14]
          Length = 585

 Score = 72.3 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/386 (11%), Positives = 98/386 (25%), Gaps = 86/386 (22%)

Query: 19  LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78
           L+ A+    F  F+  F  W     P     +P + Q++    +    H           
Sbjct: 10  LIVAQLKGDFVAFL--FVLWKALNLP-----KPTKCQIDMARTLANGDHK---------- 52

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           K  + A RGIGK+ +    ++W++   P + ++ ++ S+ +        +   + +LP  
Sbjct: 53  KFILQAFRGIGKSFITCAFVVWVLWRDPQLKVLIVSASKERADANSIF-IKNIIDLLPFL 111

Query: 139 HWFEMQSLSLHPSGWYAELL-EQSMGIDSKHYTITCRTY----------SEERPDTFVGP 187
              + +         +   L +       K   IT +              E P      
Sbjct: 112 AELKPRPGQRDSVISFDVGLAKPDHSPSVKSVGITGQLTGSRADIIIADDVEVPGNSSTS 171

Query: 188 HNTHGMAVFNDEASGT-------------PDIINKSILGFFTE--LNPNRFWIMTSNTRR 232
                +     E +                     ++     +        W        
Sbjct: 172 SAREKLWTLVTEFAALLKPLPTSRVIYLGTPQTEMTLYKELEDNKGYSTVIWPAQYPRND 231

Query: 233 LNGWFY------DIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-- 284
               +Y       +     E ++  +         D          YG      +  +  
Sbjct: 232 AEALYYGDRLAPMLKQEYDEGYEILRGQPTDPIRFDMDDLRERELEYGKAGYTLQFMLNP 291

Query: 285 ---LGQ-FPQQEVNNFI----------PHNYIEEAMSREAIDD----------------- 313
                + +P +  +  +           + ++    +R                      
Sbjct: 292 NLSDAEKYPLRLRDAIVCAVDTERAPLSYQWLPNRQNRNEELPNVGLKGDDIHSFHVCSS 351

Query: 314 ---LYAPLIMGCDIAGEGGDKTVVVF 336
               Y   I+  D +G G D+T    
Sbjct: 352 KTAEYQQKILVIDPSGRGKDETGYAV 377


>gi|253990592|ref|YP_003041948.1| Phage terminase, large subunit [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782042|emb|CAQ85206.1| Phage terminase, large subunit [Photorhabdus asymbiotica]
          Length = 405

 Score = 72.3 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 64/257 (24%), Gaps = 26/257 (10%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGM----SIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            GRG  KT   A M                I+C       L+ +   EV + +  +P   
Sbjct: 23  GGRGSAKTRTFAMMSAVRAYQAAESGTSGVILCAREFMNSLEESSMEEVKQAIRSIP--- 79

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                        W  +  +           +    +   R +          +  + DE
Sbjct: 80  -------------WLDDYFDIGEKYIRTKNRLVNYVFCGLRHNLDSIKSKARILLAWVDE 126

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY-QIDTRTV 258
           A    +I  K +     E      W+   N  +        F           +++    
Sbjct: 127 AESVSEIAWKKLRPTVRESGSE-IWVTW-NPEKDGSATDKRFRKKPPRSSIIVEMNYSDN 184

Query: 259 EGIDSGFHEGIISR-YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317
                   E        L+         G + +      + + Y  E+   + +      
Sbjct: 185 PWFPDVLEEERQEDLESLEHSDYAWIWEGAYLENSEKQVLANKYKIESF-PDDLWMKADR 243

Query: 318 LIMGCDIAGEGGDKTVV 334
           L+ G D  G   D   +
Sbjct: 244 LLFGADF-GFAKDPNTL 259


>gi|85059645|ref|YP_455347.1| hypothetical protein SG1667 [Sodalis glossinidius str. 'morsitans']
 gi|84780165|dbj|BAE74942.1| hypothetical phage protein [Sodalis glossinidius str. 'morsitans']
          Length = 413

 Score = 72.3 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 74/267 (27%), Gaps = 27/267 (10%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLIST----RPGMSIICIANSETQLKNTLWAEVSKW 131
             ++CA   GRG  KT + A M                I+C       L+ +   EV   
Sbjct: 21  KRYRCAY-GGRGSAKTRIFALMTAVKAYQAARNSESGVILCAREFMNSLEESSMQEVKLA 79

Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
           +  +P              +  +    +    +D +   +    +S  R +         
Sbjct: 80  IQSVP------------WLAAHFDIGEKYIRTLDRRVSYV----FSGLRHNLDSIKSKAR 123

Query: 192 GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED-WKR 250
            +  + DEA    +I  + +     E      W+   N           F    +D    
Sbjct: 124 ILLCWVDEAETVSEIAWQKLDPTVREPGSEV-WVTW-NPETEGSATDKRFRKDSDDAIIA 181

Query: 251 YQIDTRTVEGIDSGFHE-GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309
            +++        S   +        LDS        G + +      +   Y+ E    +
Sbjct: 182 VEMNYMDNPWFHSVLEQVRQRDLRMLDSATYAWIWEGAYLENANKQVMSGKYVFETF-PD 240

Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVF 336
            +      L  G D  G   D   ++ 
Sbjct: 241 DLWKQADRLFFGADF-GFAQDPNTLIR 266


>gi|167647445|ref|YP_001685108.1| hypothetical protein Caul_3483 [Caulobacter sp. K31]
 gi|167349875|gb|ABZ72610.1| protein of unknown function DUF264 [Caulobacter sp. K31]
          Length = 453

 Score = 72.3 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/304 (12%), Positives = 80/304 (26%), Gaps = 33/304 (10%)

Query: 38  WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA-W 96
           W    +             + +       + +    +      A+  GRG GKT   +  
Sbjct: 28  WHSLDEETFELV------EQALSDPGFGLNPHQIMPDGEWRIWALFMGRGGGKTYAASKG 81

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
             +      PG + I +  +   +++T+    S  ++                       
Sbjct: 82  SNVLAEEVFPGGTGILVGATVKDVRDTMIEGESGIIATARPGFVPHYN------------ 129

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFF 215
                   D+               D             + DE      +    ++    
Sbjct: 130 ------KHDNVLIWPNGSKALIRTADNPEDIRGPTVNWAWADELVKWRSEKSWDNLNRCV 183

Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275
             L+ N   I+ + T +    +              +  +     +D+ + EGI      
Sbjct: 184 RNLHENGTKIIVTTTPKKAKQWIKDIESLPGTIVS-RASSLDNPHMDAAYLEGIRREAET 242

Query: 276 DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR-----EAIDDLYAPLIMGCDIAGEGGD 330
            S  AR EI G++ +           IEE   R     E +        +  D +    D
Sbjct: 243 GSARAREEIFGEWIEG-DGELWTEKSIEEMRQRPSVSLEVMAKSMDRRYISVDPSSGKHD 301

Query: 331 KTVV 334
           +T +
Sbjct: 302 ETGI 305


>gi|332884414|gb|EGK04674.1| hypothetical protein HMPREF9456_03377 [Dysgonomonas mossii DSM
           22836]
          Length = 450

 Score = 72.3 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 70/263 (26%), Gaps = 18/263 (6%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GK+ L ++ +       P    +        LK T    + K  SM        +   
Sbjct: 29  GGGKSILESYWLTKNSLKYPDTKWLLGRAKMKTLKETTLKSLFKVFSMQG------ITPN 82

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
               +G   +    ++   +    I    +       F    +        DE S   + 
Sbjct: 83  YYKYNGANDKENPNTIQFYNGSLIILKDLFYYPSDPEFDELGSLEITGAAIDENSQITEK 142

Query: 207 INKSILGFFTELNPN----RFWIMTSNTRRL--NGWFYDIFNIP--LEDWKRYQIDTRTV 258
               ++                    N  +      FY         +D    Q      
Sbjct: 143 CWNIVMSRIRHDVAKNGLIPKMFGACNPTKNFVYNRFYKPHRDGILPDDKAFIQALVTDN 202

Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
             +D  + E + +    D       + G++ + + + ++   Y +             P 
Sbjct: 203 PFVDKFYIENLKNL---DPISRARLLDGEW-EYDDDPYVLMQYEKIVDLFTNSHVSGGPR 258

Query: 319 IMGCDIAGEGGDKTVVVFRRGNI 341
            M  D+A  G D T +    G I
Sbjct: 259 YMTIDVARLGKDDTTIRIWEGLI 281


>gi|224796679|ref|YP_002641707.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           WI91-23]
 gi|224553883|gb|ACN55283.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           WI91-23]
          Length = 450

 Score = 71.9 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 85/288 (29%), Gaps = 43/288 (14%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMS 109
           Q E +  ++ +             K   S G   GKT L +++++  +           +
Sbjct: 49  QKEVLFDIESN----------NYSKVIFSGGIASGKTFLASYLLVKKLIENKSFYEQDTN 98

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
              I NS   L      ++ K  S+L    + + +S          +L            
Sbjct: 99  NFIIGNSIGLLMTNTVKQIEKICSLLGI-DYEKKKSGQSFCKIAGLKLN----------- 146

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                 Y  +  D F      +   ++ +EA+         ++    +       I  +N
Sbjct: 147 -----IYGGKNRDAFSKIRGGNSAIIYVNEATVIHRETLLEVIKRLRKG--KEIIIFDTN 199

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
                 +F   +    + +K Y   T       + F +     Y          + G++ 
Sbjct: 200 PESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIQTQEKLYRRFPAYRARVLYGEWI 259

Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
             E   F      E   +++     +   IM  D A   GGD T +  
Sbjct: 260 LNESMLFN-----EMIFNQDYE---FKSPIMYIDPAFSVGGDNTAICV 299


>gi|298346517|ref|YP_003719204.1| phage terminase protein [Mobiluncus curtisii ATCC 43063]
 gi|298236578|gb|ADI67710.1| phage terminase protein [Mobiluncus curtisii ATCC 43063]
          Length = 470

 Score = 71.9 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 75/306 (24%), Gaps = 45/306 (14%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ    +          +          ++  R  GKTTL   +M  +    PG  +  
Sbjct: 32  PWQKLVADVAGE--RQAEHPERARYQTVVVTVPRQSGKTTLIKALMAAVAQANPGCQVYY 89

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            A +        W E++K L     +                    E+ +   ++   + 
Sbjct: 90  TAQTRKDAVEK-WGELAKQLR----KDMGIAPDGKPRVKVLEGTGNERIVFRGTESMIMP 144

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTP----DIINKSILGF-FTELNPNRFWIMT 227
                     T  G H      V  DEA        D +  +      T  +   + I T
Sbjct: 145 FAP-------TVEGIHGKTSPLVVVDEAWAFDQARGDDLMAAFNPVGLTIPHSQVWIIST 197

Query: 228 -------------------SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG 268
                               N       F++            + D         GF + 
Sbjct: 198 AGDTRSEWLRSLVDKGRQAINDPGTTTAFFEWSADEEMAAANLRSDEALAFHPAIGFTQE 257

Query: 269 IISRYG----LDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI 324
           +             + R   L  +P     + +     E+    E        + +G D+
Sbjct: 258 LWKIQSLAQTEPDHLYRRSYLNLWPTAAETSIVDLEAWEKLAEPEPASMPPD-VAIGFDV 316

Query: 325 --AGEG 328
             A  G
Sbjct: 317 ATARTG 322


>gi|146277344|ref|YP_001167503.1| hypothetical protein Rsph17025_1297 [Rhodobacter sphaeroides ATCC
           17025]
 gi|146278140|ref|YP_001168299.1| hypothetical protein Rsph17025_2103 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555585|gb|ABP70198.1| protein of unknown function DUF264 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145556381|gb|ABP70994.1| protein of unknown function DUF264 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 476

 Score = 71.9 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/284 (11%), Positives = 71/284 (25%), Gaps = 32/284 (11%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLIS----TRPGMSIICIANSETQLKNTLWAEVS 129
           + + FK  + + R  GKT       +               + ++  E Q    +   + 
Sbjct: 23  DDSRFKIGMFS-RQTGKTFSTCGECVDDCFTAWKDDRKTRWVILSRGERQAAEAMTEVIK 81

Query: 130 -------KWLSMLPHRHWFEMQSLSLH---PSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
                  +  + L        +          G  A      +   +             
Sbjct: 82  PFTRAFYEVYNTLVKGGEPRFEEGEFRAPQEKGPDAVYKALEVAFPNGSRITA------- 134

Query: 180 RPDTFVGPHNTHGMAVFNDEASG--TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
            P             V  DE +       I  ++    ++        + S        F
Sbjct: 135 LPANPDTARGFSAN-VILDEFAFHAKSREIWAALFPVISKGRQKLR--VISTPNGKGNKF 191

Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297
           Y++       W R+ +D              ++     D D    E   ++  +    ++
Sbjct: 192 YELMTAEGSVWSRHVVDIYEAVRQGLDRDVDMLRAGMADEDAWAQEYELKWLDEAS-AWL 250

Query: 298 PHNYIEEAMSR---EAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
            ++ I    S    +       P  +G DIA    D  V+    
Sbjct: 251 DYDLISSCESELAGKPEGYQGGPCFVGVDIAAR-NDLFVIWVME 293


>gi|288934973|ref|YP_003439032.1| hypothetical protein Kvar_2101 [Klebsiella variicola At-22]
 gi|288889682|gb|ADC58000.1| protein of unknown function DUF264 [Klebsiella variicola At-22]
          Length = 434

 Score = 71.9 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/304 (15%), Positives = 87/304 (28%), Gaps = 34/304 (11%)

Query: 61  AVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
           A+    +          +K  A  AG G GKT +    +   +   P ++    A +  Q
Sbjct: 2   AIAPTLNIPQAKFLAMQYKFKAYVAGFGSGKTWVGCGGICKGMWEHPKINQGYFAPTYPQ 61

Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
           +++  +  V +                    +    E  ++      + Y  T    S E
Sbjct: 62  IRDIFYPTVEEVAHDWG-------------LNVKINEGNKEVHFYAGRQYRGTTICRSME 108

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFT-ELNPNRFWIMTSNTRRLN 234
           +P                DE    P     +  + I+      +   R  I  + T    
Sbjct: 109 KP---QTIVGFKIGNALIDELDVMPAKKAQLAWRKIIARMRYNVAGLRNGIDVTTTPEGF 165

Query: 235 GWFYDIFNIPLED-------WKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILG 286
            + Y  F   + D       +   Q  T   E  +   +   ++  Y    ++ +  + G
Sbjct: 166 KFVYQQFAKAVRDKPSLSTLYGLVQASTFDNEKNLPPDYIPSLMESY--PPELIKAYLRG 223

Query: 287 QFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
           QF              +    RE  +    PL +G D    G    VV   R  +   + 
Sbjct: 224 QFTNLTSGTIYHQFDRKLNNCRE-EEQPGEPLYIGMDF-NVGKMAGVVHVLRLGLPFAVN 281

Query: 347 DWSA 350
           +   
Sbjct: 282 EIVK 285


>gi|62362215|ref|YP_224140.1| gp2 [Enterobacteria phage ES18]
 gi|58339058|gb|AAW70473.1| gp2 [Enterobacteria phage ES18]
          Length = 439

 Score = 71.9 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/259 (12%), Positives = 66/259 (25%), Gaps = 26/259 (10%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSI----ICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            GRG  KT   A M           +I    +C       L+ +   EV + +       
Sbjct: 29  GGRGSAKTRTFALMTAVKAYQAAEANISGVILCAREYMNSLEESSMEEVKQAIR------ 82

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                        W  +  +                +   R +          +  + DE
Sbjct: 83  ----------SVAWLDDYFDIGEKYIRTKNRKVSYVFCGLRHNLDSIKSKARILVAWVDE 132

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTV 258
           A        K +     E      W+   N  +       +F   P +     +++    
Sbjct: 133 AESVSSTAWKKLRPTVREEGSE-IWVTW-NPEKDGSATDKLFRKNPPKSSMIVEMNYVDN 190

Query: 259 EGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317
               +   E         D         G + +      + + Y+ ++   + +      
Sbjct: 191 PWFPAVLEEERQEDLANLDYADYAWIWEGAYLENSDKQVLANKYVVQSFE-DNLWRKSER 249

Query: 318 LIMGCDIAGEGGDKTVVVF 336
           L+ G D  G   D + ++ 
Sbjct: 250 LLFGADF-GFAKDPSTLIR 267


>gi|251783038|ref|YP_002997341.1| terminase large subunit [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391668|dbj|BAH82127.1| terminase large subunit [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 424

 Score = 71.9 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 78/273 (28%), Gaps = 25/273 (9%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
           NP I   A   GRG GK++  A  ++  +  +  ++ +CI  ++  L+ +++ ++   +S
Sbjct: 22  NPKILNIACKGGRGSGKSSNIA-FIISRLIIQYPVNAVCIRKTDNTLEQSVYEQIKWAIS 80

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
                 +F+     L             +    +   I  R          +        
Sbjct: 81  EQGLERYFKFNKSPLR------------ITYIPRGNYIVFRGAQNPERIKSLKDSRFPFA 128

Query: 194 AVFNDE-ASGTPDIINKSILGFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFNIPLED 247
             + +E A    +   K+I                +  T N   R   W    +    + 
Sbjct: 129 IGWIEELAEFKTEDEVKTITNSLLRGELGDGLFYKFFYTYNPPKRKQSWVNKKYESQFQP 188

Query: 248 WKRY--QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA 305
              +      +    I   F     +         R E LG+         +P + +   
Sbjct: 189 KNTFVHASTYKDNPFIAKEFIAEAEATRERSERRYRWEYLGEAIGSG---VVPFDNLRFE 245

Query: 306 MSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
              + +   +  +    D  G   D    V   
Sbjct: 246 TIPDELYRSFDNIRNAVDF-GYATDPLAFVRWH 277


>gi|75675353|ref|YP_317774.1| hypothetical protein Nwi_1160 [Nitrobacter winogradskyi Nb-255]
 gi|74420223|gb|ABA04422.1| Protein of unknown function DUF264 [Nitrobacter winogradskyi
           Nb-255]
          Length = 422

 Score = 71.9 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 66/269 (24%), Gaps = 33/269 (12%)

Query: 65  HCHSNVNNSNPTIFKCAIS-AGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSE 117
           H        N   +   +   GRG GKT   A  +       P         I  +  +E
Sbjct: 20  HQRPPELAPNGAPWLIWLMIGGRGAGKTRAGAEWVRAQALGLPPFAGEAVSRIALVGETE 79

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
              +  +   VS  L++                                           
Sbjct: 80  HDAREVMIEGVSGLLAVHAAHERPSWSPSRKRLE------------------WSNGAVAQ 121

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
               D             ++DE +     +     +       +  R   + + T R   
Sbjct: 122 AFSADDPESLRGPQFGCAWSDEMAKWRYAEAAFDMLQFGLRLGSQPRQ--LITTTPRPTA 179

Query: 236 WFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN 295
               + N P                +   F +G+++RY     + R E+ G+  +   + 
Sbjct: 180 LLKRLMNDPAS-VVTRAPTQANAFNLAPTFLQGVMARYAGT-RLGRQELDGEIIEDRPDA 237

Query: 296 FIPHNYIEEAMSREAIDDLYAPLIMGCDI 324
                 +E     EA       +++  D 
Sbjct: 238 LWSRALLERCRVSEAPPLQ--RIVVAVDP 264


>gi|240137990|ref|YP_002962462.1| hypothetical protein MexAM1_META1p1321 [Methylobacterium extorquens
           AM1]
 gi|240007959|gb|ACS39185.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
          Length = 421

 Score = 71.5 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/290 (15%), Positives = 83/290 (28%), Gaps = 35/290 (12%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTR------PGMS 109
             +EA  +H   +     P  +   A+  GRG GKT   A  +  L          P   
Sbjct: 10  RLLEADWLHLARHDQLPPPGNWTTWAVIGGRGSGKTRTGAEWVRGLAQGDPVFTPEPVER 69

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I  +  +   +++ +    S  L++                 G    + + S     +  
Sbjct: 70  IALVGETFADVRDVMIEGPSGLLALPRL--------------GGAPPVWQPSRR---RVM 112

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMT 227
                       +           AV++DE +     +     I          R  +  
Sbjct: 113 FGNGAVALAFSAEEPDSLRGPQFGAVWSDEVAKWREAETTYDMIQFGLRLGTHPRGLVT- 171

Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
             T R       +   P              + +   F E ++ RY     + R E+ G+
Sbjct: 172 -TTPRPVPLIQRLLADPRT-VVTRSRTADNAQNLAPSFLEEVVGRYAGT-RLGRQELDGE 228

Query: 288 FPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVV 334
             +   +     + IE A   EA    +  + +  D    +G G D   +
Sbjct: 229 LIEDRPDALWTRDSIERARVFEAPPLQH--IAVAIDPPASSGVGADACGI 276


>gi|254418881|ref|ZP_05032605.1| conserved hypothetical protein [Brevundimonas sp. BAL3]
 gi|196185058|gb|EDX80034.1| conserved hypothetical protein [Brevundimonas sp. BAL3]
          Length = 356

 Score = 71.5 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/258 (11%), Positives = 64/258 (24%), Gaps = 29/258 (11%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           +  GRG GKT   +  +  L      +++  +  +   ++  +    S   ++       
Sbjct: 1   MLGGRGSGKTFAGSVWIDTLARKSK-VNLALVGPALHDVREVMVEGASGIKALAEPGDRP 59

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
             ++                                    +           A + DE  
Sbjct: 60  RWEAGRRRL------------------LWKNGSAAYAFSAEDPDSLRGPQFHAAWADEFC 101

Query: 202 GT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
               P+ +  ++          R     + T R       +                  +
Sbjct: 102 VWRKPEAVLSNLRFGLRLGAAPRL--AVTTTPRPIPALRRLMAEAGTR-VDRAATALNAK 158

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319
            +  GF   +   YG    +A  E+ GQ  +           ++ A            +I
Sbjct: 159 NLSPGFLAHLSDVYGGT-RLAAQELEGQVVEG-EGALFGVEDLKRARGS--RPAELDRVI 214

Query: 320 MGCD-IAGEGGDKTVVVF 336
           +  D  A   GD   +V 
Sbjct: 215 VAVDPPASAHGDACGIVV 232


>gi|237745263|ref|ZP_04575744.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
 gi|229432492|gb|EEO42704.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
          Length = 425

 Score = 71.5 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/268 (14%), Positives = 79/268 (29%), Gaps = 23/268 (8%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           K     GRG  K++  A M+   +   P ++I+CI      LK +++ ++   +  L   
Sbjct: 35  KIVCKGGRGSAKSSNIALMLTLDLIRNP-INIVCIRKVGETLKKSVYEQIKWAIKQLGVE 93

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDS----KHYTITCRTYSEERPDTFVGPHNTHGMA 194
            +FE +   L             MG+D     K    +    +E   +      N   + 
Sbjct: 94  DYFEYKLSPLEIRYTERGNKFIFMGVDDPQKSKSIVDSSFPITEYWFEELAEFKNEDEVE 153

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI---PLEDWKRY 251
           +  D              G   +    + +   +  +  + W    +       ++   +
Sbjct: 154 MVLD----------SIYRGKLKDNLRYKGFFSYNPPKMKHNWVNKKYEYTFKEDDEIFVH 203

Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311
                    I   F +   +    +    +   LG+      N  +P + +E        
Sbjct: 204 HSTYLDNPFISDDFVKRAEAVKLNNPMKYKHTYLGEPI---GNGIVPFDNLEIRTISNEE 260

Query: 312 DDLYAPLIMGCDIAGEGGDKTVVVFRRG 339
                    G D  G G D      R G
Sbjct: 261 IKGLDRFRNGVD-WGYGVDPMAF-VRWG 286


>gi|159044464|ref|YP_001533258.1| hypothetical protein Dshi_1915 [Dinoroseobacter shibae DFL 12]
 gi|157912224|gb|ABV93657.1| hypothetical protein Dshi_1915 [Dinoroseobacter shibae DFL 12]
          Length = 260

 Score = 71.5 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 81/269 (30%), Gaps = 53/269 (19%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P  WQ+E                     + A+  GR  GKT++ A   +  +   P    
Sbjct: 31  PDPWQVEAFTTRAT--------------EVALRVGRQSGKTSVLAARAVEELHV-PESLT 75

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           +C+A +E Q K  +  E+ + L                  S       +  + I +    
Sbjct: 76  LCVAPAERQAK-IIAREIGRQLQ---------------RTSLVINRPTQTELEIANGARV 119

Query: 171 ITCRTYSEERPDTFVGPHN-THGMAVFNDEASGT-----PDIINKSILGFFTELNPNRFW 224
           I         P T            +  DE +        + +  S+L   TE       
Sbjct: 120 IA-------LPSTSDTIRGFPAVSCLIIDECAFLQGDGGGEDLISSVLPMLTEDGQ---V 169

Query: 225 IMTSNTRRLNGWFYDIF--NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI 282
             +S     N +F  +F    P +   R  +    +  + +   E +           R 
Sbjct: 170 FFSSTPAGKNNYFARLFLDAKPGDGIHRIVVRGTDIPRL-ADKVERMRRTLSATK--FRQ 226

Query: 283 EILGQFPQQEVNNFIPHNYIEEAMSREAI 311
           EIL +    +   +   + IE+A S+   
Sbjct: 227 EILVE-MLADGQAYFDLSIIEQATSKTEK 254


>gi|66396341|ref|YP_240671.1| ORF008 [Staphylococcus phage 88]
 gi|66396415|ref|YP_240743.1| ORF009 [Staphylococcus phage 92]
 gi|62636756|gb|AAX91867.1| ORF008 [Staphylococcus phage 88]
 gi|62636829|gb|AAX91940.1| ORF009 [Staphylococcus phage 92]
          Length = 421

 Score = 71.5 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/277 (11%), Positives = 77/277 (27%), Gaps = 25/277 (9%)

Query: 70  VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129
               +  +       GRG GK++  + ++   +  R  M+ + I  ++  L  +++ ++ 
Sbjct: 20  KVTKDKEVLNVVAKGGRGSGKSSDISIIIT-QLIMRYPMNAVVIRKTDNTLATSVFEQIK 78

Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189
             +      H F+++   +             +    +   I  R          +    
Sbjct: 79  WAIEEQKVSHLFKVKVSPM------------EITYIPRGNRIIFRGAQNPERLKSLKDSR 126

Query: 190 THGMAVFNDE-ASGTPDIINKSILGFF----TELNPNRFWIMTSNTR-RLNGWFYDIFN- 242
                 + +E A    +    +I         +      +  + N   R   W    +  
Sbjct: 127 FPFSIAWIEELAEFKTEDEVTTITNSLLRGELDEGLFYKFFFSYNPPKRKQSWVNKKYES 186

Query: 243 -IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301
               ++   +         I   F +   S    +    R E +G+         +P N 
Sbjct: 187 SFQADNTYVHHSTYLNNPFISKQFIQEAESAKKRNEQRYRWEYMGEAIGSG---VVPFNN 243

Query: 302 IEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
           +      +   D +  +    D  G   D    V   
Sbjct: 244 LRIEEIPQRQYDTFDNIRNAVDF-GYATDPLAFVRWH 279


>gi|322617167|gb|EFY14073.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322617525|gb|EFY14424.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322624846|gb|EFY21675.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322630396|gb|EFY27166.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322634576|gb|EFY31309.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322639287|gb|EFY35979.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322641951|gb|EFY38570.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322646142|gb|EFY42657.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322651994|gb|EFY48357.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322656167|gb|EFY52464.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322659319|gb|EFY55566.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322665779|gb|EFY61962.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322669983|gb|EFY66124.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322673970|gb|EFY70067.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322678727|gb|EFY74783.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322683477|gb|EFY79491.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322687552|gb|EFY83522.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323193612|gb|EFZ78817.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323198519|gb|EFZ83621.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323203541|gb|EFZ88564.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323208431|gb|EFZ93370.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323213567|gb|EFZ98357.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323218397|gb|EGA03107.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323219724|gb|EGA04205.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323224576|gb|EGA08856.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323232391|gb|EGA16494.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323235576|gb|EGA19660.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323241265|gb|EGA25301.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323245007|gb|EGA29009.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323250125|gb|EGA34019.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323253910|gb|EGA37735.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323258780|gb|EGA42436.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323262838|gb|EGA46389.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323264213|gb|EGA47720.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323270910|gb|EGA54348.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 439

 Score = 71.5 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/259 (12%), Positives = 66/259 (25%), Gaps = 26/259 (10%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSI----ICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            GRG  KT   A M           +I    +C       L+ +   EV + +       
Sbjct: 29  GGRGSAKTRTFALMTAVKAYQAAEANISGVILCAREYMNSLEESSMEEVKQAIR------ 82

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                        W  +  +                +   R +          +  + DE
Sbjct: 83  ----------SVAWLDDYFDIGEKYIRTKNRKVSYVFCGLRHNLDSIKSKARILVAWVDE 132

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTV 258
           A        K +     E      W+   N  +       +F   P +     +++    
Sbjct: 133 AESVSSTAWKKLRPTVREEGSE-IWVTW-NPEKDGSATDKLFRKNPPKSSIIVEMNYVDN 190

Query: 259 EGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317
               +   E         D         G + +      + + YI ++   + +      
Sbjct: 191 PWFPAVLEEERQEDLANLDYADYAWIWEGAYLENSDKQVLANKYIVQSFE-DNLWRKSER 249

Query: 318 LIMGCDIAGEGGDKTVVVF 336
           L+ G D  G   D + ++ 
Sbjct: 250 LLFGADF-GFAKDPSTLIR 267


>gi|238912006|ref|ZP_04655843.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
          Length = 439

 Score = 71.5 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/259 (12%), Positives = 66/259 (25%), Gaps = 26/259 (10%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSI----ICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            GRG  KT   A M           +I    +C       L+ +   EV + +       
Sbjct: 29  GGRGSAKTRTFALMTAVKAYQAAEANISGVILCAREYMNSLEESSMEEVKQAIR------ 82

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                        W  +  +                +   R +          +  + DE
Sbjct: 83  ----------SVAWLDDYFDIGEKYIRTKNRKVSYVFCGLRHNLDSIKSKARILVAWVDE 132

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTV 258
           A        K +     E      W+   N  +       +F   P +     +++    
Sbjct: 133 AESVSSTAWKKLRPTVREEGSE-IWVTW-NPEKDGSATDKLFRKNPPKSSIIVEMNYVDN 190

Query: 259 EGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317
               +   E         D         G + +      + + YI ++   + +      
Sbjct: 191 PWFPAVLEEERQEDLANLDYADYAWIWEGAYLENSDKQVLANKYIVQSFE-DNLWRKSER 249

Query: 318 LIMGCDIAGEGGDKTVVVF 336
           L+ G D  G   D + ++ 
Sbjct: 250 LLFGADF-GFAKDPSTLIR 267


>gi|167907351|ref|ZP_02494556.1| hypothetical protein BpseN_34295 [Burkholderia pseudomallei NCTC
           13177]
          Length = 490

 Score = 71.5 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/322 (11%), Positives = 77/322 (23%), Gaps = 46/322 (14%)

Query: 43  KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102
             L H   P R+Q      +       ++            A R  GK  +   M+ W  
Sbjct: 8   IELPHNWTPRRYQGRLWNYLIGGGKRAIDI-----------AHRRWGKDEV---MLHWTA 53

Query: 103 STRPGM--SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
                   +   +    TQ +  +W  V+                       +   + ++
Sbjct: 54  VAAHDRVANYWHMLPKATQARKAIWTAVN------------PHTGKRRIDEAFPEAIRKR 101

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220
           +   +         T+     D +     +    +   E +     +   +     E   
Sbjct: 102 TRDQEMFIEFNNGSTWQVLGSDNYDNYVGSPPAGIVLSEWALCNPAVWAYLKPILDENGG 161

Query: 221 NRFWIMTSNTRRLNGWFYDI--FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRY----- 273
              W     T R     + +    +    W     +            E   + Y     
Sbjct: 162 ---WAAFITTPRGKNHAHKMLQMALANPKWFAEVSNVLKTGRFSLAELEEQRAEYRALYG 218

Query: 274 -GLDSDVARIEILGQFPQQEVNNFIPHNYI---EEAMSREAIDDLYAPLIMGCDIAGEGG 329
                 +   E++  F    +  +          +        D   P+I   D+     
Sbjct: 219 EEQGDAMFEQELMCSFEAAILGAYYGKEMAAAERDGRIGRVPHDPNLPVITVWDLGH--S 276

Query: 330 DKTVVVFRRGNI--IEHIFDWS 349
           D T + F + +   I  I  + 
Sbjct: 277 DDTSIWFAQVHWGEIRLIDHYR 298


>gi|313760829|gb|ADR79391.1| terminase [APSE phage Eptesicus fuscus/P5/IT/USA/2009]
          Length = 394

 Score = 71.5 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 57/205 (27%), Gaps = 24/205 (11%)

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221
           +   +       +        +    H       + +EA    +    +++    +    
Sbjct: 14  IEGINDSIFKYGQLAR--NIASIKSKH--DFDVAWVEEAETVSEKSLDTLIPTIRKPGSE 69

Query: 222 RFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT-------VEGIDSGFHEGIISRYG 274
             W    N    +G  Y  F  P +     Q            V  +D+ +    +    
Sbjct: 70  -LWFSF-NPAEEDGAVYRRFVKPYKAIIDKQGYYEDDEVYVGKVSYLDNPWLPAELK--- 124

Query: 275 LDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIMGCDIAGEGGDKT 332
             +D  + E    +     +  I   ++E A               ++  D A  G D+ 
Sbjct: 125 --NDAQKGECDANY----EDALIQPEWVEAATDAHIKLGFKPSGIRVVTFDPADSGQDEK 178

Query: 333 VVVFRRGNIIEHIFDWSAKLIQETN 357
            +  R G +IE    WS   + +  
Sbjct: 179 ALSKRYGVLIEDCVSWSEGDVADAT 203


>gi|167647878|ref|YP_001685541.1| hypothetical protein Caul_3918 [Caulobacter sp. K31]
 gi|167350308|gb|ABZ73043.1| protein of unknown function DUF264 [Caulobacter sp. K31]
          Length = 439

 Score = 71.5 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/316 (14%), Positives = 82/316 (25%), Gaps = 41/316 (12%)

Query: 37  PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
           PW               W        + H    V+     +F      GRG GKT   A 
Sbjct: 33  PWTELAPWPVVQDGLKTW-----RVTEAHQKPPVDPWITWLF----LGGRGAGKTFAGAS 83

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
            +      +PG ++  +  +   ++  +    S   S+       + Q+           
Sbjct: 84  WI--ANQAKPGRNLALVGPTFHDVREVMIEGPSGIKSLYLPGDRPKWQASRRRLE----- 136

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGF 214
                                    +           A + DE    P        +   
Sbjct: 137 -------------FRNGAIAQAFSAEDPDALRGPQFHAAWADEFCAWPKPAETLAMLRFG 183

Query: 215 FTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYG 274
                  R  +    T R      ++   P    +     +   + +   F   +   YG
Sbjct: 184 LRLGTDPRLVVT--TTPRPIRALRNLIAEP-GAVQTRAPTSANADHLAPAFLSTLRGLYG 240

Query: 275 LDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD-IAGEGGDKT- 332
               +A  E+ G   + E   F   +    A  R A    +  +++  D  A   GD   
Sbjct: 241 GT-RLAAQELDGLIVEGEGGLFRAEDL---ARCRGAPPAAFDRVVVAIDPPATATGDACG 296

Query: 333 -VVVFRRGNIIEHIFD 347
            VV  R G+    + D
Sbjct: 297 IVVCGRFGDRAFVLAD 312


>gi|328544550|ref|YP_004304659.1| phage DNA Packaging Protein [polymorphum gilvum SL003B-26A1]
 gi|326414292|gb|ADZ71355.1| Phage DNA Packaging Protein [Polymorphum gilvum SL003B-26A1]
          Length = 413

 Score = 71.5 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/251 (10%), Positives = 59/251 (23%), Gaps = 31/251 (12%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRP------GMSIICIANSETQLKNTLWAEVSKWLSML 135
           +  GRG GKT   A  +                 I  +  +   ++  +   VS  L++ 
Sbjct: 28  LMGGRGAGKTRAGAEWIRARALGHRWCEAAVAGRIALVGETFADVREVMIEGVSGLLAVH 87

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
           P                                             +             
Sbjct: 88  PRHERPAWNPSRRRLE------------------WPNGAVAQAFSAEDPEALRGPQFDIA 129

Query: 196 FNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253
           ++DE +     +     +          R  +    T R       + ++P         
Sbjct: 130 WSDELAKWRHAEETFDMLQFGLRLGARPRQLVT--TTPRPVPLLKRLIDLP--GTALTHA 185

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
            TR      +      I      + + R E+ G+  +   +     + +E     +   D
Sbjct: 186 PTRANALFLAPGFLERIVARYQGTRLGRQELDGELIEDRPDALWRRDALEACRV-DRAPD 244

Query: 314 LYAPLIMGCDI 324
               +++  D 
Sbjct: 245 ALVRIVVAVDP 255


>gi|161613293|ref|YP_001587258.1| hypothetical protein SPAB_01003 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161362657|gb|ABX66425.1| hypothetical protein SPAB_01003 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 443

 Score = 71.5 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 52/288 (18%), Positives = 81/288 (28%), Gaps = 38/288 (13%)

Query: 81  AISAGRGIGKTTLNAWMMLWLI---STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
           A+  GR  GKT + +   +        RPGM I               AE  ++  +   
Sbjct: 27  AVRCGRRWGKTFMLSSAAVTYATAPFKRPGMDIELGGRVG-----IFTAEYRQYQEIYDK 81

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
                +             LL+    ID                D  +         +  
Sbjct: 82  LEEILLPLKKSFSRQEKRLLLKNGGKIDFWVTN-----------DNKLAGRGREYEIILI 130

Query: 198 DEASG------TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY 251
           DEA+         +I  KSI           +   T +      +FY I +     +  +
Sbjct: 131 DEAAFTKSPEMLREIWPKSIKPTLLTTKGRAYVFSTPDGVDEENFFYAICHDKNLGFIEH 190

Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311
              T +   +     E        D  V R E L +F      +        E  +++  
Sbjct: 191 HAPTSSNPFVPPEELEK--EEANNDPRVFRQEFLAEFVDWSAASLFDIRKWFEGENQDQP 248

Query: 312 DDLYA---PLIMGCDIAGEGG---DKTVVVF-----RRGNIIEHIFDW 348
            D       +    D A +GG   D T VV+     R G     I DW
Sbjct: 249 VDYPEMCQAVFAVMDTAVKGGSEHDGTAVVYYAVDTRPGIQRLTILDW 296


>gi|200389400|ref|ZP_03216011.1| phage terminase, large subunit, pbsx family [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|199601845|gb|EDZ00391.1| phage terminase, large subunit, pbsx family [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
          Length = 439

 Score = 71.5 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/259 (12%), Positives = 66/259 (25%), Gaps = 26/259 (10%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSI----ICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            GRG  KT   A M           +I    +C       L+ +   EV + +       
Sbjct: 29  GGRGSAKTRTFALMTAVKAYQAAEANISGVILCAREYMNSLEESSMEEVKQAIR------ 82

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                        W  +  +                +   R +          +  + DE
Sbjct: 83  ----------SVAWLDDYFDIGEKYIRTKNRKVSYVFCGLRHNLDSIKSKARILVAWVDE 132

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTV 258
           A        K +     E      W+   N  +       +F   P +     +++    
Sbjct: 133 AESVSSTAWKKLRPTVREEGSE-IWVTW-NPEKDGSATDKLFRKNPPKSSIIVEMNYVDN 190

Query: 259 EGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317
               +   E         D         G + +      + + Y+ ++   + +      
Sbjct: 191 PWFPAVLEEERQEDLANLDYADYAWIWEGAYLENSDKQVLANKYVVQSFE-DNLWRKSER 249

Query: 318 LIMGCDIAGEGGDKTVVVF 336
           L+ G D  G   D + ++ 
Sbjct: 250 LLFGADF-GFAKDPSTLIR 267


>gi|326425005|ref|YP_004286227.1| putative DNA packaging protein B [Pseudomonas phage phi15]
 gi|325048409|emb|CBZ42022.1| putative DNA packaging protein B [Pseudomonas phage phi15]
          Length = 586

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/400 (10%), Positives = 89/400 (22%), Gaps = 93/400 (23%)

Query: 24  CVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS 83
              +F  F+  F  W     P+     P + Q +  + +                +  + 
Sbjct: 13  LKGNFIAFL--FVLWAALNLPI-----PTKQQQDMAKKLAQGDDR----------RFILQ 55

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           A RGIGK+ +    ++W +   P + I+ ++ ++ +        + + + +LP  H  + 
Sbjct: 56  AFRGIGKSFITCAFVVWKLWNDPDLKIMIVSANKDRADANSVF-IKRIIDLLPFLHDLKP 114

Query: 144 -----------QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
                            P    +       G  +            E P           
Sbjct: 115 RQGQRDSSLSFDVGPARPDHSPSVKSVGVTGGMTGSRADILIADDVEVPGNSGTQSARDH 174

Query: 193 MAVFNDEASGT------------PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
           +     E                P                   W       R        
Sbjct: 175 LGELVKEFDAILKPGGTIIYLGTPQTEMTLYRELEERGYTTTIWPARY--PRDQADLESY 232

Query: 241 FNIPLEDWKRYQI-------------DTRTVEGIDSGFHEGIISRYGLDSDVARIEIL-- 285
           F       +                         D          YG      +  +   
Sbjct: 233 FQPKQNRSRLAPKMLEELEADPRLFGMPSDPVRFDEEDLRERELSYGKGGFALQFMLNPN 292

Query: 286 ----GQFPQQEVNNFIPHNYIEEAMSRE-AIDDL-------------------------- 314
                ++P +  +  +    +  A +    + +                           
Sbjct: 293 LSDIAKYPLKLRDFIVAALDMATAPTTWQWLPNPRNETQGLPVVGLKGDRFHRYEQCSSN 352

Query: 315 ---YAPLIMGCDIAGEGGDKTVVVF-RRGNIIEHIFDWSA 350
              Y   I+  D +G G D+T      + N    + DW  
Sbjct: 353 TASYEGKILVIDPSGRGKDETGYAVLYQLNGYIFLMDWGG 392


>gi|300022629|ref|YP_003755240.1| hypothetical protein Hden_1105 [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299524450|gb|ADJ22919.1| protein of unknown function DUF264 [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 500

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/263 (15%), Positives = 70/263 (26%), Gaps = 15/263 (5%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPG--MSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
           +  GRG GKT   A  +  L         S     N+  +        ++     L    
Sbjct: 102 LLGGRGSGKTRAGAEWIRGLACGEEPGPRSAAGSRNASRRAPTKESPRIALVGKTLADVR 161

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
              ++  S   +   A           +              D           A + DE
Sbjct: 162 NVMIEGQSGLLAVHPARERPVFEPSKRRLIWPNGAVAELFSADEAEALRGPQFTAAWCDE 221

Query: 200 ASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257
            +     +     +       +  R  +    T R          I  E      + T  
Sbjct: 222 LAKWRNAEKAWDMLQFALRLGDAPRACVT--TTPRATKLL--KSIIADEATVTVNLATAD 277

Query: 258 VE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA 316
               +   F   +  RY   S + R E+LG+  +   +     ++IEEA  R        
Sbjct: 278 NALNLAPTFLAEMTRRYAG-SAIGRQELLGEIVEDASDGLWRRHWIEEA--RVDAAPEMQ 334

Query: 317 PLIMGCDI---AGEGGDKTVVVF 336
            +++  D    A    D   +V 
Sbjct: 335 RVVVAVDPPVTATAASDACGIVV 357


>gi|91976441|ref|YP_569100.1| hypothetical protein RPD_1964 [Rhodopseudomonas palustris BisB5]
 gi|91682897|gb|ABE39199.1| protein of unknown function DUF264 [Rhodopseudomonas palustris
           BisB5]
          Length = 386

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/249 (12%), Positives = 63/249 (25%), Gaps = 32/249 (12%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSMLPH 137
            GRG GKT   A  +       P         I  +  +E  ++  +   VS  L++ P 
Sbjct: 3   GGRGAGKTRGGAEWVRCQALGLPPFASVPAARIALVGETEHDVREVMIEGVSGLLAVHPP 62

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
                                                       D             ++
Sbjct: 63  DQRPNWLPSRKRLE------------------WSNGAVAQAFSADDPESLRGPQFSCAWS 104

Query: 198 DEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255
           DE +     +     +          R   + + T R +     +   P           
Sbjct: 105 DEMAKWRYAEAAFDMLQFGLRLGAQPRQ--LITTTPRPSTLLKRLLGDPS-AVTTRAPTR 161

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY 315
                +   F + +++RY     + R E+ G+  ++  +       IE     +A     
Sbjct: 162 ANALNLAPTFLQAVMARYAGT-RLGRQELDGELIEERPDALWSRALIETCRVADAPPLQ- 219

Query: 316 APLIMGCDI 324
             L++  D 
Sbjct: 220 -RLVVAVDP 227


>gi|219723105|ref|YP_002474527.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr]
 gi|219694031|gb|ACL34563.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr]
          Length = 450

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/336 (12%), Positives = 92/336 (27%), Gaps = 55/336 (16%)

Query: 9   QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68
           Q   Q   ++    + + S  NF                       Q + ++++  +   
Sbjct: 15  QYKNQFGVDISQFVKPINSLINFAHF------------EEKHLTVKQNKVIKSIQKNNEK 62

Query: 69  NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMSIICIANSETQLKNT 123
                     K  +S G   GKT L  ++ +  +           +   I NS+  ++  
Sbjct: 63  ----------KIILSGGIASGKTYLACYLFIKSLIANKKLYSSDTNNFIIGNSQRSVEVN 112

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
           +  +  K   +L   +     + S                            Y  ++   
Sbjct: 113 VLGQFEKLCKLLNISYIPRHTNNSYIMIDSLRIN-----------------LYGGDKASD 155

Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243
           F     ++   +F +EA+       + +L            I  +N      +F   +  
Sbjct: 156 FERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCAQETIIFDTNPDHPEHYFKTDYID 213

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
            +  +  Y+  T     +   F +     Y          +LG++     + F   N  +
Sbjct: 214 NVATFNTYKFTTYDNVLLSKEFIKTQEKLYKDIPAYKARVLLGEWIASTDSIFTQINITQ 273

Query: 304 EAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVFRR 338
           + +            I   D A   GGD T +    
Sbjct: 274 DYVFTSP--------IAYLDPAFSIGGDNTALCVMD 301


>gi|168236450|ref|ZP_02661508.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|194735659|ref|YP_002113600.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|194711161|gb|ACF90382.1| phage terminase, large subunit, pbsx family [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197290245|gb|EDY29601.1| phage terminase, large subunit, pbsx family protein [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
          Length = 439

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/259 (12%), Positives = 66/259 (25%), Gaps = 26/259 (10%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSI----ICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            GRG  KT   A M           +I    +C       L+ +   EV + +       
Sbjct: 29  GGRGSAKTRTFALMTAVKAYQAAEANISGVILCAREYMNSLEESSMEEVKQAIR------ 82

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                        W  +  +                +   R +          +  + DE
Sbjct: 83  ----------SVAWLDDYFDIGEKYIRTKNRKVSYVFCGLRHNLDSIKSKARILVAWVDE 132

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTV 258
           A        K +     E      W+   N  +       +F   P +     +++    
Sbjct: 133 AESVSSTAWKKLRPTVREEGSE-IWVTW-NPEKDGSATDKLFRKNPPKSSIIVEMNYVDN 190

Query: 259 EGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317
               +   E         D         G + +      + + Y+ ++   + +      
Sbjct: 191 PWFPAVLEEERQEDLANLDYADYAWIWEGAYLENSDKQVLANKYVVQSFE-DNLWRKSER 249

Query: 318 LIMGCDIAGEGGDKTVVVF 336
           L+ G D  G   D + ++ 
Sbjct: 250 LLFGADF-GFAKDPSTLIR 267


>gi|119953680|ref|YP_950600.1| putative large terminase subunit [Staphylococcus phage CNPH82]
 gi|112361306|gb|ABI15678.1| putative large terminase subunit [Staphylococcus phage CNPH82]
 gi|329736010|gb|EGG72285.1| phage terminase, large subunit, PBSX family [Staphylococcus
           epidermidis VCU045]
          Length = 421

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/275 (10%), Positives = 77/275 (28%), Gaps = 25/275 (9%)

Query: 72  NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131
             +          GRG GK++  + ++   +  R  M+ + +  ++  L  +++ ++   
Sbjct: 22  TKDREKLNIVAKGGRGSGKSSDISIIIT-QLIMRYPMNAVVVRKTDNTLATSVFEQIKWA 80

Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
           +      H F+++   +             +    +   I  R          +      
Sbjct: 81  IEEQKVSHLFKVKVSPM------------EITYVPRGNRIIFRGAQNPERLKSLKDSRFP 128

Query: 192 GMAVFNDE-ASGTPDIINKSILGFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--I 243
              ++ +E A    +    +I                +  + N   R   W    +    
Sbjct: 129 FSIMWIEELAEFKTEDEVTTITNSMLRGELDDGLFYKFFFSYNPPKRKQSWVNKKYETSF 188

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
             ++   +         I   F +   S    +    R E +G+         +P N ++
Sbjct: 189 QPDNTFVHHSTYLDNPFISKQFIQEAESAKERNEQRYRWEYMGEAIGSG---VVPFNNLQ 245

Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
                + +   +  +    D  G   D    V   
Sbjct: 246 IEKIPDDLYKTFDNIRNAVDF-GYATDPLAFVRWH 279


>gi|226305996|ref|YP_002765956.1| hypothetical protein RER_25090 [Rhodococcus erythropolis PR4]
 gi|226185113|dbj|BAH33217.1| hypothetical protein RER_25090 [Rhodococcus erythropolis PR4]
          Length = 402

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/282 (9%), Positives = 69/282 (24%), Gaps = 39/282 (13%)

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124
           H        + + FK  +  GR  GKTT     M       PG  +   A +  Q ++ +
Sbjct: 5   HQSQRKIAESSSRFKV-LRCGRRFGKTTYAVEEMKGACLFEPGP-VAYFATTRDQARDIV 62

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
           WAE+ +  +++   ++       L  +    +     + +                 +  
Sbjct: 63  WAELLE--NVIGTTNYVSHNEQRLEVTLRRPDGSLNRIRLFGW--------------ENI 106

Query: 185 VGPHNTHGMAVFNDEASGT---PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
                     V  DE            + I     +             +     +    
Sbjct: 107 ETARGKKYSLVVLDELDSMRAFEKQWREIIRATLADYRGRAL--FMGTPKGYKSLYRLEK 164

Query: 242 NIPLE-DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
                 +++ +   +     +     + +     +       E+L ++ +          
Sbjct: 165 LSKTNANYEVFHFTSFDNPFLSVEELDEMRGEMTVTQ--YAQEMLAEYHKM-EGLIY--E 219

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE----------GGDKT 332
                   +A+        +  D              G D +
Sbjct: 220 EFNRDQHIKALPFTPERWALSIDFGYNHPFAAGIFAIGSDNS 261


>gi|163759067|ref|ZP_02166153.1| Phage DNA Packaging Protein [Hoeflea phototrophica DFL-43]
 gi|162283471|gb|EDQ33756.1| Phage DNA Packaging Protein [Hoeflea phototrophica DFL-43]
          Length = 492

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 70/280 (25%), Gaps = 42/280 (15%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM---- 108
            WQL     +        +    +     +  GRG GKT   A  +  L S         
Sbjct: 89  DWQL-----IARPEQLPPDGDWRSW---LLMGGRGSGKTRAGAEWVHGLASGAVPGLGRQ 140

Query: 109 -SIICIANSETQLKNTLWAEVSKWLSMLPH-RHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
             I  +A +    +  +   VS  + +    R  FE     L                  
Sbjct: 141 GRIALVAETFGDAREVMIDGVSGIMGVARDQRPAFEATRRRL------------------ 182

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFW 224
                +         +             + DE             +          R  
Sbjct: 183 --VWPSGAVAQMFSSEDPESLRGPQFDLAWCDELGKWRHARETWDMLQFALRLGQHPRQ- 239

Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
            + + T R       +         R +        + +GF + + +RYG    + R E+
Sbjct: 240 -LITTTPRATPLMLALVKDIGTRVTRIR-TEDNAGNLAAGFLDTVRARYGGT-RLGRQEL 296

Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI 324
            G+      +       +E  + R         +++  D 
Sbjct: 297 DGELIADREDGLWRREQLEALVVR--KPGPLGRIVVAVDP 334


>gi|219723512|ref|YP_002476767.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr]
 gi|219694406|gb|ACL34930.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr]
          Length = 396

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 78/235 (33%), Gaps = 24/235 (10%)

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           +  + ++ ++     N  IF     + RG GKT   A + L    +  G   + I   + 
Sbjct: 3   LRRLPIYVNAYKEKPNAEIF--IYYSSRGTGKTYDIATVNLERKFSADGGDTLAIRKKKN 60

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
           +   ++  E+ + LS    R +F +    +            S+    K   +      E
Sbjct: 61  KTTQSIHKEILELLSRYNLRKFFNISKAKIESK---------SLIFGKKRAFVF-----E 106

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
              DT       H   ++ +EA+       + ++    E     +    SN    + W Y
Sbjct: 107 GGHDTRDLKSYAHFKDLWLEEANQFSSDDIEMLIPTMREQGGRIYMS--SNPVPKSHWLY 164

Query: 239 DIFNIPLEDW--KRYQIDTRTVEGID----SGFHEGIISRYGLDSDVARIEILGQ 287
             +    ++      +   R    ++      + E     Y  +    RIE+LG+
Sbjct: 165 KRYLANQDNPAVCIIKSTYRDNPFLNGGDVEAWLEKQKLAYHGNDIGFRIEVLGE 219


>gi|293368016|ref|ZP_06614649.1| large terminase subunit [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291317838|gb|EFE58251.1| large terminase subunit [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 421

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/275 (10%), Positives = 77/275 (28%), Gaps = 25/275 (9%)

Query: 72  NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131
             +          GRG GK++  + ++   +  R  M+ + +  ++  L  +++ ++   
Sbjct: 22  TKDRKKLNVVAKGGRGSGKSSDISIIIT-QLIMRYPMNAVVVRKTDNTLATSVFEQIKWA 80

Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
           +      H F+++   +             +    +   I  R          +      
Sbjct: 81  IEEQKVSHLFKVKVSPM------------EITYVPRGNRIIFRGAQNPERLKSLKDSRFP 128

Query: 192 GMAVFNDE-ASGTPDIINKSILGFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--I 243
              ++ +E A    +    +I                +  + N   R   W    +    
Sbjct: 129 FSIMWIEELAEFKTEDEVTTITNSMLRGELDDGLFYKFFFSYNPPKRKQSWVNKKYETSF 188

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
             ++   +         I   F +   S    +    R E +G+         +P N ++
Sbjct: 189 QPDNTFVHHSTYLDNPFISKQFIQEAESTKERNELRYRWEYMGEAIGSG---VVPFNNLQ 245

Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
                + +   +  +    D  G   D    V   
Sbjct: 246 IEKIPDELYKSFDNIRNAVDF-GYATDPLAFVRWH 279


>gi|254293613|ref|YP_003059636.1| hypothetical protein Hbal_1247 [Hirschia baltica ATCC 49814]
 gi|254042144|gb|ACT58939.1| protein of unknown function DUF264 [Hirschia baltica ATCC 49814]
          Length = 397

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/244 (10%), Positives = 57/244 (23%), Gaps = 25/244 (10%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
             GRG GKT   A  +   I       +  +  + + ++  +    S   ++ P      
Sbjct: 20  MGGRGAGKTRAGAEWIRSQIWEHGKQRVALVGPTLSDVREVMIEGPSGLRNIGPAEERPI 79

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
                                                  +           A + DE   
Sbjct: 80  YSPSRRRLE------------------WPNGAEGFVFSAEDPDSLRGPQFDAAWGDEIGA 121

Query: 203 TP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
                     ++      +  R       T R       +    L++ +  +  T     
Sbjct: 122 WHRGQTCWDMLMFGLRLGDNPRICAT--TTPRPTPLIRKLV--KLDNIEITRASTLENAH 177

Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIM 320
             +      +      + + R EI G+            + IE   +  A    +  +++
Sbjct: 178 NLAPSFLEAVQANYGGTRLGRQEIDGELIDDPKGALWLRSQIETNRTINAK-HEFQRIVV 236

Query: 321 GCDI 324
             D 
Sbjct: 237 AIDP 240


>gi|119024600|gb|AAP34063.2| gene 19 [Enterobacteria phage T7]
          Length = 586

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/386 (11%), Positives = 97/386 (25%), Gaps = 86/386 (22%)

Query: 19  LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78
           L+ A+    F  F+  F  W     P+     P + Q++  + +    +           
Sbjct: 10  LVVAQLKGDFVAFL--FVLWKALNLPV-----PTKCQIDMAKVLANGDNK---------- 52

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           K  + A RGIGK+ +    ++W +   P + I+ ++ S+ +        +   + +LP  
Sbjct: 53  KFILQAFRGIGKSFITCAFVVWSLWRDPQLKILIVSASKERADANSIF-IKNIIDLLPFL 111

Query: 139 HWFEMQSLSLHPSGWYAEL-----------LEQSMGIDSKHYTITCRTYSEERPDTFVGP 187
              + +         +                   G  +            E P      
Sbjct: 112 SELKPRPGQRDSVISFDVGPANPDHSPSVKSVGITGQLTGSRADIIIADDVEIPSBSATM 171

Query: 188 HNTHGMAVFNDEASGT-------------PDIINKSILGFFTE--LNPNRFWIMTSNTRR 232
                +     E +                     ++     +        W       R
Sbjct: 172 GAREKLWTLVQEFAAXLKPLPSSRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRTR 231

Query: 233 LNGWFYDIFNIP------LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-- 284
               +Y     P       E+ +            D          YG      +  +  
Sbjct: 232 EENLYYSQRLAPMLRAEYDENPEALAGTPTDPVRFDRDDLRERELEYGKAGFTLQFMLNP 291

Query: 285 ---LGQ-FPQQEVNNFIPHNYIEEA-MSREAIDD-------------------------- 313
                + +P +  +  +    +E+A M  + + +                          
Sbjct: 292 NLSDAEKYPLRLRDAIVAALDLEKAPMHYQWLPNRQNIIEDLPNVGLKGDDLHTYHDCSN 351

Query: 314 ---LYAPLIMGCDIAGEGGDKTVVVF 336
               Y   I+  D +G G D+T    
Sbjct: 352 NLGQYQQKILVIDPSGRGKDETGYAV 377


>gi|218529683|ref|YP_002420499.1| hypothetical protein Mchl_1708 [Methylobacterium chloromethanicum
           CM4]
 gi|218521986|gb|ACK82571.1| protein of unknown function DUF264 [Methylobacterium
           chloromethanicum CM4]
          Length = 421

 Score = 71.1 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/290 (13%), Positives = 79/290 (27%), Gaps = 35/290 (12%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTR------PGMS 109
             +EA  +H   +     P  +   A+  GRG GKT   A  +  L          P   
Sbjct: 10  RLLEADWLHLARHDQLPPPGNWTTWAVIGGRGSGKTRTGAEWVRGLAYGDPVFSPEPVER 69

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I  +  +   +++ +    S  L++          +L +                  +  
Sbjct: 70  IALVGETFADVRDVMIEGPSGLLALPRLGG-----ALPVW------------QPSRRRVV 112

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMT 227
                       +           AV++DE +     +     I          R  +  
Sbjct: 113 FGNGAVALAFSAEEPDSLRGPQFGAVWSDEVAKWREAEATYDMIQFGLRLGTHPRGLVT- 171

Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
             T R       +   P              + +   F E ++ RY     + R E+ G+
Sbjct: 172 -TTPRPVPLIRRLLADPRT-VVTRSRTADNAQNLAPSFLEEVVGRYAGT-RLGRQELDGE 228

Query: 288 FPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVV 334
             +   +     + IE   +R         + +  D    +  G D   +
Sbjct: 229 LIEDRPDALWTRDSIER--TRVFEAPPLQRIAVAIDPPASSRVGADACGI 276


>gi|62327097|ref|YP_223885.1| putative large subunit terminase [Lactobacillus phage phiJL-1]
 gi|37930114|gb|AAP74512.1| putative large subunit terminase [Lactobacillus phage phiJL-1]
          Length = 440

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/288 (12%), Positives = 87/288 (30%), Gaps = 27/288 (9%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
                 RG GK+   A  ++  I   P ++ +      T  K++ +A + K    +    
Sbjct: 38  LVYKGSRGSGKSYATAAKVIIDIMMYPYVNWLVTRQYATTQKDSTFATIRKVAHSMGVLD 97

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
            F+     L  +           G+D      + +  +                  + +E
Sbjct: 98  LFKFTKSPLEITYKQTGQKVFFRGMDDPLKITSIQPVTGFICRR------------WCEE 145

Query: 200 A-SGTPDIINKSILGFFTELNPNRFW---IMTSNTRRLNGWFYDIF---NIPLEDWKRYQ 252
           A          ++        P   +   ++T N      W    F          +   
Sbjct: 146 AYELKSLDAFDTVEESMRGELPPGGFYQTVITFNPWSDRHWLKHEFFDDKTKRNHSRAIT 205

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
              +  + +++ + + +      + + AR+ +LG++            + +   S +  +
Sbjct: 206 TTYKDNDHLNADYVDSLKEMLVRNPNRARVAVLGEW-GIAEGLVFDGLFEQRDFSYD--E 262

Query: 313 DLYAPLIMGCDIAGEGGDKTV---VVFRRGNIIEHI-FDWSAKLIQET 356
               P  +G D  G   D T    +   + N I +I  ++  + +   
Sbjct: 263 IANLPKSVGLDF-GFKHDPTAGEFIAVDQDNRIVYIYDEFYKQHLLTN 309


>gi|237743779|ref|ZP_04574260.1| phage terminase [Fusobacterium sp. 7_1]
 gi|229432810|gb|EEO43022.1| phage terminase [Fusobacterium sp. 7_1]
          Length = 426

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 67/245 (27%), Gaps = 36/245 (14%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           I  G G  K+   A  ++          I+ +      +K + ++ +   +S       F
Sbjct: 25  IVGGYGSSKSYHTALKLILKAIQ-EKRRILVVRAVYRTIKESCFSLLKGIISNYNLNGLF 83

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
                          +    +   +    I       + P+        +   ++ +E  
Sbjct: 84  SYT------------VNPLHIRGRNGSEFIF---MGLDDPEKLKSI--DNVDMIWIEECP 126

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL---------------E 246
                    + G    L  +    +T+N   +N W Y+ F                   +
Sbjct: 127 EISYNAFNELNGRLRALEKDLHIFLTNNPVSVNNWTYERFIKKAGIDEEELYQNRIMTTD 186

Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306
           D   +         +   + + + +    D +  RI   G+F       F     I++A 
Sbjct: 187 DTYYHHSVVEDNAFVTDEYIKQLKNFETYDIERYRIAYQGRFGIVGERVF---TNIQKAS 243

Query: 307 SREAI 311
             E  
Sbjct: 244 DTEVQ 248


>gi|304393573|ref|ZP_07375501.1| large terminase [Ahrensia sp. R2A130]
 gi|303294580|gb|EFL88952.1| large terminase [Ahrensia sp. R2A130]
          Length = 503

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/265 (10%), Positives = 61/265 (23%), Gaps = 24/265 (9%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           +  GRG GKT   A  +            + +      L+      ++            
Sbjct: 119 LMGGRGSGKTRTGAEWV----------KGMVLGQDWCTLRAV--GSIALVGETYADIREV 166

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
            +   S   +   +      +    +              +   G         + DE +
Sbjct: 167 MVDGESGLLAIHASNERPIFVSSRRRLEWQNGAVAQLFSSEDPDGLRGPQFEIAWCDELA 226

Query: 202 GT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
                +    ++       N  R  +    T                             
Sbjct: 227 KWKNAEATWDTLQLGLRLGNCPRQVV---TTTPKAVPLLKRIINDQATVISRMRTVENEA 283

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319
            +   F + +   YG  S + R E+ G+  +   +       ++    R         +I
Sbjct: 284 HLAPNFLDRVTKLYGGTS-LGRQELDGELIEDREDGLWSRPMLQRCRVR--KHPPLQRII 340

Query: 320 MGCDIAGEG---GDKTVV-VFRRGN 340
           +  D    G    D   +    +G 
Sbjct: 341 VAVDPPVTGHAHSDACGLVAVGQGE 365


>gi|170023468|ref|YP_001719973.1| hypothetical protein YPK_1222 [Yersinia pseudotuberculosis YPIII]
 gi|169750002|gb|ACA67520.1| conserved hypothetical protein [Yersinia pseudotuberculosis YPIII]
          Length = 534

 Score = 70.7 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 52/386 (13%), Positives = 105/386 (27%), Gaps = 60/386 (15%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIK------------GKP 44
           P      +   + L  +    E + + + F           WG+               P
Sbjct: 12  PDYTQVFEWRMERLQRIRQQPELLPAMRAFYRNNPAQFIIDWGMTTDPRNLDYGLPVSIP 71

Query: 45  LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
              F +   W    M+      +   + S            R +G + ++  +   L   
Sbjct: 72  FLLFPKQEEWVHWIMDRRRNMENGLTDKS------------REMGLSWVSVGLSSTLCLF 119

Query: 105 RPGMSIICIANSETQLKNT-----LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159
              M I   +  E  + +T     L+ +  K++  LP        +    P         
Sbjct: 120 NKEMVIGFGSRKEEYVDSTGDPKALFWKARKFIETLPAEFRGSWDNKKHAPYMRIEFPDS 179

Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
            S+                +                F DE++     +        T   
Sbjct: 180 GSII---------------KGEAGDNIGRGDRTTMYFVDESAFLQRPLLIDAALSQTTRC 224

Query: 220 PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279
                I  S+   +N  F    +        +    R+    D  +++    +   +  +
Sbjct: 225 R----IDLSSVNGMNNPFAQKRHGGK--IPVFTFHWRSDPRKDDAWYKKECEKI-DNPVI 277

Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAM--SREAIDDLYAPLIMGCDIAGEGGDKTVVVFR 337
              E+   +        IP  +++ A+    +         I   D+A EG D      R
Sbjct: 278 VAQELDLNYNAAAEGILIPSEWVQAAIGAHTKLGITPSGARIGALDVADEGIDLNAFSSR 337

Query: 338 RGNIIEHIFDWSAK--LIQETNQEGC 361
            G +++ +  WS K   I  T Q+  
Sbjct: 338 TGVLLDRLKAWSGKGSDIYATTQDAM 363


>gi|56560881|ref|YP_161301.1| hypothetical protein BGP016 [Borrelia garinii PBi]
 gi|52696522|gb|AAU85866.1| hypothetical protein BGP016 [Borrelia garinii PBi]
          Length = 396

 Score = 70.4 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 79/235 (33%), Gaps = 24/235 (10%)

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           +  + ++ ++     N  IF     + RG GKT   A + L    +  G   + I   + 
Sbjct: 3   LRRLPIYVNAYKEKPNAEIF--IYYSSRGTGKTYDIATVNLERKFSVDGGDTLAIRKKKN 60

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
           +   ++  E+ + LS+   R +F +    +            S+    K   +      E
Sbjct: 61  KTTQSIHKEILELLSIYGLRKFFNISKAKIESK---------SLIFGKKRAFVF-----E 106

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
              DT       H   ++ +EA+       + ++    E     +    SN    + W Y
Sbjct: 107 GGHDTRDLKSYAHFKDLWLEEANQFSSDDIEMLIPTMREQGGRIYMS--SNPVPKSHWLY 164

Query: 239 DIFNIPLEDW--KRYQIDTRTVEGID----SGFHEGIISRYGLDSDVARIEILGQ 287
             +    ++      +   R    ++      + E     Y  +    RIE+LG+
Sbjct: 165 KRYLANQDNPAVCIIKSTYRDNPFLNGGDVEAWLEKQKLAYHGNDIGFRIEVLGE 219


>gi|219872329|ref|YP_002476730.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr]
 gi|219694371|gb|ACL34896.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr]
          Length = 396

 Score = 70.4 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 77/235 (32%), Gaps = 24/235 (10%)

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           +  +  + ++     N  IF     + RG GKT   A + L       G   + I   + 
Sbjct: 3   LRRLPTYVNAYKEKPNAEIF--IYYSSRGTGKTYDIATVNLERKFNPDGGDTLAIRKKKN 60

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
           +   ++  E+ + L++   R +F +    +            S+    K   +      E
Sbjct: 61  KTTQSIHKEICELLNIYNLRKFFNISKSKIESK---------SLIFGKKRAFVF-----E 106

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
              DT       H   ++ +EA+       + ++    E     +    SN    + W Y
Sbjct: 107 GGHDTRDLKSYAHFKDLWLEEANQFTSEDIEMLIPTMREQGGRVYMS--SNPVPKSHWLY 164

Query: 239 DIFNIPLEDW--KRYQIDTRTVEGID----SGFHEGIISRYGLDSDVARIEILGQ 287
             +    ++      +   R    ++      + E     Y  +    RIE+LG+
Sbjct: 165 KRYLSNEDNPAVCIIKSTYRDNPFLNGGNVQAWLEKQKLAYHGNDIGFRIEVLGE 219


>gi|92116961|ref|YP_576690.1| hypothetical protein Nham_1408 [Nitrobacter hamburgensis X14]
 gi|91799855|gb|ABE62230.1| protein of unknown function DUF264 [Nitrobacter hamburgensis X14]
          Length = 422

 Score = 70.4 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/275 (11%), Positives = 62/275 (22%), Gaps = 35/275 (12%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAI---SAGRGIGKTTLNAWMMLWLISTRPG------MSII 111
            +  H H       P      I     GRG GKT   A  +                 I 
Sbjct: 14  DIFAHPHQRPPELAPNGAPWLIWLMVGGRGAGKTRAGAEWIRAQALGLAPFAVEAVSRIA 73

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +  +E   +  +   VS  L++                                     
Sbjct: 74  LVGETEHDAREVMIEGVSGLLAVHAAHERPAWSPSRKRLE------------------WS 115

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSN 229
                     D             ++DE +     +     +       +  R   + + 
Sbjct: 116 NGAVAQAFSADDPESLRGPQFGCAWSDEMAKWRYAEAAFDMLQFGLRLGSQPRQ--LITT 173

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
           T R       +   P       +  T+      +      +      + + R E+ G+  
Sbjct: 174 TPRPTALLKRLMADPAS--VVSRAPTQANAFNLAPTFLQGVMARYAGTRLGRQELDGEII 231

Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI 324
           +   +       +E     EA       +++  D 
Sbjct: 232 EDRPDALWSRALLERCRVHEAPPLQ--RIVVAVDP 264


>gi|306818204|ref|ZP_07451935.1| possible phage terminase protein [Mobiluncus mulieris ATCC 35239]
 gi|304649168|gb|EFM46462.1| possible phage terminase protein [Mobiluncus mulieris ATCC 35239]
          Length = 470

 Score = 70.4 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 47/336 (13%), Positives = 81/336 (24%), Gaps = 59/336 (17%)

Query: 39  GIKGKPLEHFSQP-HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97
           G           P   WQ    E       +N         +  ++  R  GKTTL   +
Sbjct: 18  GQVELVARFLQTPLMPWQKLVAEVACERQAANPER--ARYQRVIVTVPRQSGKTTLIKAL 75

Query: 98  MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
           M  +    PG  +   A +        W E++K L                  +G   + 
Sbjct: 76  MAAVAQANPGCKVYYTAQTRKDAVEK-WGELAKQLRK-------------EMGTGPDGKP 121

Query: 158 LEQSMGIDSKHYTITCRTYSEERP--DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
             + +        +   T S  +P   T  G H         DEA          ++   
Sbjct: 122 RVKVLEGTGNEKIVFQGTESVIQPFAPTPGGLHGATSPLAIVDEAWAFDQAQGDDLMAAL 181

Query: 216 ----------------TELNPNRFWI---------MTSNTRRLNGWFYDIFNIPLEDWKR 250
                           T  +    W+          TS+      +F    +    D   
Sbjct: 182 NPVGLTIPHSQVWIISTAGDTRSQWLKSLVDDGRAATSDPGATTAFFEWSADEETADADL 241

Query: 251 YQIDT-RTVE--GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
                       G      +           + R   L  +P     + I     +  ++
Sbjct: 242 RGDAALSFHPALGYTQELWKLKALGKDEKDHLYRRAYLNLWPTNAQTSIIDLETWD-GLA 300

Query: 308 REAIDDLYAPLIMGCDIA--GEGG--------DKTV 333
            E  +       +  D+A    G         D +V
Sbjct: 301 TEISETPTGAT-IAFDVADGRTGATIYAAWQQDNSV 335


>gi|66395973|ref|YP_240307.1| ORF008 [Staphylococcus phage ROSA]
 gi|62636393|gb|AAX91504.1| ORF008 [Staphylococcus phage ROSA]
          Length = 421

 Score = 70.4 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 77/275 (28%), Gaps = 25/275 (9%)

Query: 72  NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131
             +  +       GRG GK++  + ++   +  R  M+ + I  ++  L  +++ ++   
Sbjct: 22  TKDKDLLNIIAKGGRGSGKSSDISIIIT-QLIMRYPMNAVVIRKTDNTLATSVFEQIKWA 80

Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
           +      H F+++   +             +    +   I  R          +      
Sbjct: 81  IEEQKVTHLFKVKVSPM------------EITYIPRGNRIIFRGAQNPERLKSLKDSRFP 128

Query: 192 GMAVFNDE-ASGTPDIINKSILGFF----TELNPNRFWIMTSNTR-RLNGWFYDIFN--I 243
               + +E A    +    +I         +      +  + N   R   W    +    
Sbjct: 129 FSIAWIEELAEFKTEDEVTTITNSLLRGELDEGLFYKFFFSYNPPKRKQSWVNKKYESSF 188

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
             ++   +         I   F +   S    +    R E +G+         +P N + 
Sbjct: 189 QADNTFVHHSTYLNNPFISKQFIQEAESAKKRNEQRYRWEYMGEAIGSG---VVPFNNLR 245

Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
                +   D +  +    D  G   D    V   
Sbjct: 246 IEEIPQGQYDTFDNIRNAVDF-GYATDPLAFVRWH 279


>gi|307270085|ref|ZP_07551405.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
           TX4248]
 gi|306513580|gb|EFM82192.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
           TX4248]
          Length = 425

 Score = 70.4 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/267 (12%), Positives = 82/267 (30%), Gaps = 11/267 (4%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
           N  I       GRG GK++  A  ++  +  R  ++ + I   +  L+ +++ ++   + 
Sbjct: 25  NSDILNIVCKGGRGSGKSSDIA-HIITQLLMRYAVNAVGIRYVDNTLEQSIYEQMKWAIE 83

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
                H F+     L  +           G  +     + +         ++        
Sbjct: 84  QQGVTHLFKFNKSPLRITYIPRGNYMIFRGAQNPERIKSLKDSRFPFAIGWIEELGEFKT 143

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN--IPLEDWKRY 251
               DE +   + +   + G   +    +F+   +  +R   W    +      ++   +
Sbjct: 144 ---EDEVTTITNSL---LRGELGDGLFYKFFFSYNPPKRRQSWVNKKYESSFQPDNTFVH 197

Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311
               +    I   F + + +    +   AR E  G+           +  +E+    + +
Sbjct: 198 HSTYKDNPFISREFLKEVEAARDRNPLRARWEYDGE-AIGSGVVPFSNLKVEKGCITDEM 256

Query: 312 DDLYAPLIMGCDIAGEGGDKTVVVFRR 338
              +  +  G D  G   D    V   
Sbjct: 257 VANFDNIRNGLDF-GYATDPLAFVRWH 282


>gi|260596962|ref|YP_003209533.1| hypothetical protein CTU_11700 [Cronobacter turicensis z3032]
 gi|260216139|emb|CBA28942.1| hypothetical protein CTU_11700 [Cronobacter turicensis z3032]
          Length = 409

 Score = 70.4 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 71/267 (26%), Gaps = 27/267 (10%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLIST----RPGMSIICIANSETQLKNTLWAEVSKW 131
             ++C+   GRG  KT   A M                I+C       L+ +   EV + 
Sbjct: 22  KRYRCS-HGGRGSAKTRTFALMTAVKAYQAANNGESGVILCAREFMNSLEESSMEEVKQA 80

Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
           +  +P              +  +    +    +D +   + C      R +         
Sbjct: 81  IRAVP------------WLAANFDIGEKYIRTLDKRVSYVFC----GLRHNLDSIKSKAR 124

Query: 192 GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKR 250
            +  + DEA    ++  + +     E +    W+   N  R        +   P +D   
Sbjct: 125 ILLCWVDEAETVSEVAWQKLDPTVREDDSE-IWVTW-NPERDGSATDRRYRKEPGDDCIT 182

Query: 251 YQIDTRTVEGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309
            +++                      D         G + +      +   Y   A   +
Sbjct: 183 VEMNYIDNPWFPRVLEGVRRKDQKRLDPATYAWVWEGAYLENSNKQVLAGKY-RVAEFSD 241

Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVF 336
            +      L  G D  G   D   +V 
Sbjct: 242 ELWKEAERLFFGADF-GFAKDPNTLVR 267


>gi|323137496|ref|ZP_08072573.1| hypothetical protein Met49242DRAFT_1961 [Methylocystis sp. ATCC
           49242]
 gi|322397122|gb|EFX99646.1| hypothetical protein Met49242DRAFT_1961 [Methylocystis sp. ATCC
           49242]
          Length = 323

 Score = 70.4 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 47/333 (14%), Positives = 91/333 (27%), Gaps = 61/333 (18%)

Query: 18  MLMHAECVLSFKNFVMRFF-----PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNN 72
           ML   E +     F   F      PW +      H       + +F  +V        + 
Sbjct: 1   MLNIVEAMDDPALFGRWFPGASWDPWRVV-LKAAHGLPMTEAEADFFRSVAD-----RDP 54

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS---------IICIANSETQLKNT 123
            +    +     GR  GK ++ + ++ W  +   G            +C+A  + Q +  
Sbjct: 55  PSRRARELWAVCGRRAGKDSIASAIVTWSAAMFDGADRLRPGERALCLCLACDKDQARIV 114

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
           L    + +  + P                      +  + + +               + 
Sbjct: 115 LSYVRAYFAELEP-------------LRAMVTRETKDGLELSNGVDIYVG-------VND 154

Query: 184 FVGPHNTHGMAVFNDEASGTPDII--------NKSILGFFTELNPNRFWIMTSNTRRLNG 235
           F        +    DE +   D           +++      L P    I  S+  R  G
Sbjct: 155 FRAVRGRTILCAVLDEIAYWRDENSASPDLELYRALKPGMATL-PEAMLIGISSPYRRAG 213

Query: 236 WFYDIFNIPLED----WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
             +                          +D    +        D   AR E L +F + 
Sbjct: 214 LLHAKHRQAYGRDGDTLVIRAPSAVMNPTLDQAEIDQA---MAEDPAAARAEWLAEF-RD 269

Query: 292 EVNNFIPHNYIEEAMSREAIDDL----YAPLIM 320
           +++ F+  + IE A+    +       YAP IM
Sbjct: 270 DISGFLGLDLIEAAVDPTIVTRPPRGCYAPWIM 302


>gi|154247629|ref|YP_001418587.1| hypothetical protein Xaut_3704 [Xanthobacter autotrophicus Py2]
 gi|154161714|gb|ABS68930.1| protein of unknown function DUF264 [Xanthobacter autotrophicus Py2]
          Length = 446

 Score = 70.4 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/269 (11%), Positives = 64/269 (23%), Gaps = 32/269 (11%)

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQL 120
             N            I AGRG GKT   A  +  ++             I  +A +    
Sbjct: 46  RPNQLPPPGDWLTWLILAGRGYGKTRTGAEWVRSVVCGATPLSRGILGRIALVAETAADA 105

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           ++ +    S  LS+ P       +      +                         +   
Sbjct: 106 RDVMVEGESGILSVHPKAFRPLYEPSKRRLT------------------WPNGAVATLYN 147

Query: 181 PDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
                          + DE +           +       +  R  +    T R      
Sbjct: 148 AVEPDQLRGPQHDGAWCDELAKWRYAGETWDQLQFGLRLGDKPRQVVT--TTPRPIPVLK 205

Query: 239 DIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIP 298
            I                    + S F   ++ +Y   + + R E+  +           
Sbjct: 206 QIIAAGTSR-VTRGSTHENRANLASTFLAEVVKKY-EGTRLGRQELNAEILDDVPGALWT 263

Query: 299 HNYIEEAMSREAIDDLYAPLIMGCDIAGE 327
            + ++  MSR         +++  D +G 
Sbjct: 264 RDMLD--MSRVGFPPDLVRVVVAVDPSGT 290


>gi|188580687|ref|YP_001924132.1| hypothetical protein Mpop_1430 [Methylobacterium populi BJ001]
 gi|179344185|gb|ACB79597.1| protein of unknown function DUF264 [Methylobacterium populi BJ001]
          Length = 421

 Score = 70.0 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/279 (12%), Positives = 71/279 (25%), Gaps = 34/279 (12%)

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP------GMSIICIANSETQL 120
             +           A+  GRG GKT   A  +  L    P         I  +  +   +
Sbjct: 21  RHDQLPPPGDWTTWAVIGGRGSGKTRTGAEWVRGLAHGDPVFTAEAVGRIALVGETFADV 80

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           ++ +    S  L++                 G    + + S     +             
Sbjct: 81  RDVMIEGPSGLLALPRL--------------GGPPPVWQPSRR---RVMFGNGAVALAFS 123

Query: 181 PDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
            +           A ++DE +     +     I          R  +    T R      
Sbjct: 124 AEEPDSLRGPQFGAAWSDEVAKWREAEAAYDMIQFGLRLGAHPRGLVT--TTPRPVPLIR 181

Query: 239 DIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIP 298
            +   P              + +   F E ++ RY     + R E+ G+  +   +    
Sbjct: 182 RLLADPRT-VVTRSRTADNAQNLAPRFLEEVVGRYAGT-RIGRQELDGELIEDRPDALWT 239

Query: 299 HNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVV 334
            + IE      A       + +  D    +  G D   +
Sbjct: 240 RDGIERTRIHAAPPLQ--RIAVAVDPPASSRAGADACGI 276


>gi|221196218|ref|ZP_03569265.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
 gi|221202891|ref|ZP_03575910.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gi|221176825|gb|EEE09253.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gi|221182772|gb|EEE15172.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
          Length = 424

 Score = 70.0 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 67/265 (25%), Gaps = 35/265 (13%)

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126
            + +  +     +  I  GR  GKTTL             G+ +     +          
Sbjct: 14  QAEIGRAFNESRRVVIRCGRRFGKTTLLERCASKWAYN--GLKVGWFGPTYK-------- 63

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
                     +   ++    ++ P  +    ++Q + ++S           E        
Sbjct: 64  ---------LNLPTYKRILRTVQPVVYSKSKIDQVIELNSGGCIEFWTLQDE------DA 108

Query: 187 PHNTHGMAVFNDEASGTPDI----INKSILGFFTELNPNRFWIMTSNTRR--LNGWFYDI 240
             +     V  DE S  P        ++I     +   +         +      +FY+ 
Sbjct: 109 GRSRFYDRVIIDEGSLVPKGLRSIWEQAIAPTLLDRKGHAIMA--GTPKGIDPENFFYEA 166

Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
                  W+ +   T +   +D      +   Y   + V + E L  F       F    
Sbjct: 167 CTDKTLGWREFHAPTASNPMLDPEAVARLKDEY--PALVYQQEYLADFVDWNGAAFFSEE 224

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIA 325
            +               +    D A
Sbjct: 225 SLLVDGEPVDYPTRCDQVFAVVDTA 249


>gi|30062205|ref|NP_836376.1| putative bacteriophage protein [Shigella flexneri 2a str. 2457T]
 gi|56479715|ref|NP_706602.2| putative bacteriophage protein [Shigella flexneri 2a str. 301]
 gi|30040450|gb|AAP16182.1| putative bacteriophage protein [Shigella flexneri 2a str. 2457T]
 gi|56383266|gb|AAN42309.2| putative bacteriophage protein [Shigella flexneri 2a str. 301]
 gi|332763396|gb|EGJ93636.1| hypothetical protein SFK671_0791 [Shigella flexneri K-671]
 gi|332768294|gb|EGJ98479.1| hypothetical protein SF293071_0838 [Shigella flexneri 2930-71]
 gi|333021628|gb|EGK40878.1| hypothetical protein SFK304_0897 [Shigella flexneri K-304]
          Length = 207

 Score = 70.0 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/215 (11%), Positives = 66/215 (30%), Gaps = 22/215 (10%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GR   K+   A + +  +S +  +   C    + +++ +++  +   +     RH F +
Sbjct: 10  GGRSSSKSWDAAGIAI-FLSNKYTLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRI 68

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
            +  +                 +    +    +     +            ++ +EA   
Sbjct: 69  LNNKIINRV-------------TGSEFVFYGLWR----NIEEIKSLEGIDMLWLEEAHAL 111

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRYQIDTRTVEGID 262
            +   K +     +     ++I   N   +  + +  F   P E     +I+      + 
Sbjct: 112 TEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEGTLIRKINYDENPFLS 169

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297
               + I +    D D  +    G  P+ + +  I
Sbjct: 170 DTMLKVIDAARRRDPDGFKHVYEGV-PESDDDAAI 203


>gi|331652431|ref|ZP_08353450.1| putative phage terminase [Escherichia coli M718]
 gi|331050709|gb|EGI22767.1| putative phage terminase [Escherichia coli M718]
          Length = 283

 Score = 70.0 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 87/288 (30%), Gaps = 35/288 (12%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
            M+ +    +           K  A  AG G GKT +    +   I   PG++    A +
Sbjct: 1   MMKMISPTLNVPQARFLSMPHKFKAYIAGFGSGKTWVGCGGICKGIWEHPGINQGYFAPT 60

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
             Q+++  +  V +  +                 +    E  ++      + Y  T    
Sbjct: 61  YPQIRDIFYPTVEEVAADWG-------------LNVKINEGNKEVHFYYGRQYRGTTICR 107

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL-----NPNRFWIMTSNTR 231
           S E+P                DE    P    ++             +  R  I  + T 
Sbjct: 108 SMEKP---QTIVGFKIGNALVDELDILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTP 164

Query: 232 RLNGWFYDIFNIPLED-------WKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIE 283
               + Y+ F   + +       +   Q  T   E  + + +   ++  Y    ++ +  
Sbjct: 165 EGFKFVYEQFVKAVREKTELASLYGLVQASTFDNEKNLPADYIPSLLESY--PPELIKAY 222

Query: 284 ILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD--IAGEGG 329
           + GQF            +  +  + E ++    P+ +G D  +   GG
Sbjct: 223 LRGQFTNLTSGTVYHQ-FDRKLNNCEEVEQPGEPIYIGMDFNVGKMGG 269


>gi|66396048|ref|YP_240381.1| ORF008 [Staphylococcus phage 71]
 gi|62636467|gb|AAX91578.1| ORF008 [Staphylococcus phage 71]
          Length = 421

 Score = 70.0 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 33/270 (12%), Positives = 76/270 (28%), Gaps = 25/270 (9%)

Query: 77  IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136
           I       GRG GK++  + ++   +  R  M+ + I  ++  L  +++ ++   +    
Sbjct: 27  ILNIIAKGGRGSGKSSDISIIIT-QLIMRYPMNAVVIRKTDNTLATSVFEQIKWAIEEQK 85

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
             H F+++   +             +    +   I  R          +          +
Sbjct: 86  VSHLFKVKVSPM------------EITYIPRGNRIIFRGAQNPERLKSLKDSRFPFSVAW 133

Query: 197 NDE-ASGTPDIINKSILGFF----TELNPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDW 248
            +E A    +    +I         +      +  + N   R   W    +      ++ 
Sbjct: 134 IEELAEFKTEDEVTTITNSLLRGELDEGLFYKFFFSYNPPKRKQSWVNKKYESSFQADNT 193

Query: 249 KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR 308
             +         I   F +   S    +    R E +G+         +P N +      
Sbjct: 194 FVHHSTYLNNPFISKQFIQEAESAKKRNEQRYRWEYMGEAIGSG---VVPFNNLRIEEIP 250

Query: 309 EAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
           +   D +  +    D  G   D    V   
Sbjct: 251 QGQYDTFDNIRNAVDF-GYATDPLAFVRWH 279


>gi|85059534|ref|YP_455236.1| putative phage terminase large subunit [Sodalis glossinidius str.
           'morsitans']
 gi|84780054|dbj|BAE74831.1| putative phage terminase large subunit [Sodalis glossinidius str.
           'morsitans']
          Length = 240

 Score = 70.0 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 64/214 (29%), Gaps = 22/214 (10%)

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
           P  +K A   GRG GK+   A + + +   R    I+C    +  + +++   + + +  
Sbjct: 12  PAPYKVAY-GGRGRGKSYFFAELAIEVA-RRTKTVILCARELQESISDSVHKLLRETIDR 69

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
           L +   FE+Q  ++                     T T   +   + +            
Sbjct: 70  LGYNAEFEVQKNTII-----------------HLATGTTFIFLGVKNNVTKVKSAQGVGI 112

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRYQI 253
            + +EA          +L           WI   N + +    Y  F   P +     + 
Sbjct: 113 CWVEEAEAVTKDSWDVLLPSIRGDKNAEVWISF-NPKNILDDTYQRFIVNPPKGAIILKA 171

Query: 254 DTRTVEGI-DSGFHEGIISRYGLDSDVARIEILG 286
           +        DS   + +      + D  R    G
Sbjct: 172 NYSDNPYFHDSPLPQQMEECKERNVDRCRCRREG 205


>gi|219053375|ref|YP_002455734.1| phage terminase, large subunit, pbsx family protein [Borrelia
           afzelii ACA-1]
 gi|226234324|ref|YP_002775459.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           Bol26]
 gi|216752668|gb|ACJ73353.1| phage terminase, large subunit, pbsx family protein [Borrelia
           afzelii ACA-1]
 gi|226202138|gb|ACO37810.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           Bol26]
          Length = 396

 Score = 70.0 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 78/235 (33%), Gaps = 24/235 (10%)

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           +  + ++ ++     N  IF     + RG GKT   A + L    +  G   + I   + 
Sbjct: 3   LRRLPIYVNAYKEKPNAEIF--IYYSSRGTGKTYDIATVNLERKFSVDGGDTLAIRKKKN 60

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
           +   ++  E+ + LS    R +F +    +            S+    K   +      E
Sbjct: 61  KTTQSIHKEILELLSRYNLRKFFNISKAKIESK---------SLIFGKKRAFVF-----E 106

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
              DT       H   ++ +EA+       + ++    E     +    SN    + W Y
Sbjct: 107 GGHDTRDLKSYAHFKDLWLEEANQFSADDIEMLIPTMREQGGRIYMS--SNPVPKSHWLY 164

Query: 239 DIFNIPLEDW--KRYQIDTRTVEGID----SGFHEGIISRYGLDSDVARIEILGQ 287
             +    ++      +   R    ++      + E     Y  +    RIE+LG+
Sbjct: 165 KRYLANEDNPAVCIIKSTYRDNPFLNGGDVEAWLEKQKLAYHGNDIGFRIEVLGE 219


>gi|198242430|ref|YP_002214959.1| hypothetical protein SeD_A1100 [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|193876434|gb|ACF24836.1| ORF11 [Salmonella enterica subsp. enterica serovar Dublin]
 gi|197936946|gb|ACH74279.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|326622711|gb|EGE29056.1| hypothetical protein SD3246_1075 [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 423

 Score = 70.0 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 78/278 (28%), Gaps = 41/278 (14%)

Query: 70  VNNSNPTIFKCAISAGRGIGKTT-LNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
                    +  I AGR  GKTT L      W                  Q++   +A  
Sbjct: 17  KKIYRSPAKRKVIRAGRRFGKTTMLEQAGGNWAA---------------RQMRVGWFAPS 61

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
            K L  LP           +  S    + + + +G     +            D      
Sbjct: 62  YKIL--LPSFKTIRDLLKPITISSSKTDSIIELIGGGLVEFWTL---------DNPDAGR 110

Query: 189 NTHGMAVFNDEAS----GTPDIINKSILGFFTELNPNRFWIMTSNTRR--LNGWFYDIFN 242
           +     V  DE S    G  DI  ++I     + + +         +      +FY   N
Sbjct: 111 SRKYHKVIIDEGSLVKKGMRDIWEQAIEPTLLDFDGDAVMA--GTPKGVDDENFFYQACN 168

Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302
                W+ +   T     I+      II   G    V + E   +F      NF   +++
Sbjct: 169 DKSMGWEEHHAPTAANPTINPAALARIID--GRPPLVVQQEYNAEFVDWRGQNFFKLDWL 226

Query: 303 EEAMSREAIDDLYAPLIMGCDIAGEG---GDKTV-VVF 336
            E  +          +    D A +G    D +  + F
Sbjct: 227 LENGAPVDYPFSCDTVYGVVDCAQKGKLQNDGSACIWF 264


>gi|225851344|ref|YP_002731578.1| hypothetical protein PERMA_1815 [Persephonella marina EX-H1]
 gi|225646641|gb|ACO04827.1| conserved hypothetical protein [Persephonella marina EX-H1]
          Length = 518

 Score = 70.0 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 49/367 (13%), Positives = 100/367 (27%), Gaps = 48/367 (13%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + ++ S   + + E    +   +    F  F   +          + FS+P  +Q   ++
Sbjct: 12  LEKVKSRSPQQDPEKQARV--EKAKNDFWYFCSYY-------LSHKFFSEPAPYQKLLIQ 62

Query: 61  ------AVDVHCHSNVNNSNPTIFKCAISA----------GRGIGKTTLNAWMMLWLIST 104
                 A           + P  +K  I             RG GKTT     +LW    
Sbjct: 63  LFNTRNATPEIVEKLKEWTEPETWKYLIPKKNIKGIINIEPRGHGKTTRAEAFLLWNAIF 122

Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
               +I+ IA S+   +  L     +          F     S   + +       S+  
Sbjct: 123 EKHKNIMVIAASKEAAEEILENIKLEVEENEKLLEDFGELEGSPWKANYIKFKNGVSISA 182

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
                 I     S +             +     E+    + I          +     +
Sbjct: 183 RGIDGRIRG---SRKGATRPDLILCDDLIKDQAAESPTLREKIYNRFKRAVLPMADRDAF 239

Query: 225 IMTSNT-----RRLNGWFYDIFNIPLEDWKR-------YQIDTRTVEGIDSGFHEGIISR 272
           I+ +NT        +    +      ++W            +       DS +    + +
Sbjct: 240 IIFTNTILHYDDLPSRLLKEYEQGKHKEWFAVFFATPFIDKNGEEKALWDSYWDLESLRK 299

Query: 273 YGLD--SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEG-- 328
                 S     E   + P+ E +     ++ +       +      ++MG D A  G  
Sbjct: 300 KEEQIGSTAFAQEYRNR-PRSEKDMIFKPDWFQY-YDITEVWGKKLDVVMGVDPA-TGKK 356

Query: 329 -GDKTVV 334
            GD + +
Sbjct: 357 DGDYSAI 363


>gi|219048282|ref|YP_002455497.1| PbsX family phage terminase large subunit [Borrelia afzelii ACA-1]
 gi|216752464|gb|ACJ73223.1| phage terminase, large subunit, pbsx family protein [Borrelia
           afzelii ACA-1]
          Length = 396

 Score = 70.0 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 79/235 (33%), Gaps = 24/235 (10%)

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           +  + ++ ++     N  IF     + RG GKT   A + L    +  G   + I   + 
Sbjct: 3   LRRLPIYVNAYKEKPNAEIF--IYYSSRGTGKTYDIATVNLERKFSVDGGDTLAIRKKKN 60

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
           +   ++  E+ + LS+   R +F +    +            S+    K   +      E
Sbjct: 61  KTTQSIHKEILELLSIYGLRKFFNISKAKIESK---------SLIFGKKRAFVF-----E 106

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
              DT       H   ++ +EA+       + ++    E     +    SN    + W Y
Sbjct: 107 GGHDTRDLKSYAHFKDLWLEEANQFSSDDIEMLIPTMREQGGRIYMS--SNPVPKSHWLY 164

Query: 239 DIFNIPLEDW--KRYQIDTRTVEGID----SGFHEGIISRYGLDSDVARIEILGQ 287
             +    ++      +   R    ++      + E     Y  +    RIE+LG+
Sbjct: 165 KRYLANEDNPAVCIIKSTYRDNPFLNGGDVEAWLEKQKLAYHGNDIGFRIEVLGE 219


>gi|332761025|gb|EGJ91313.1| hypothetical protein SF434370_0892 [Shigella flexneri 4343-70]
          Length = 235

 Score = 70.0 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/215 (11%), Positives = 66/215 (30%), Gaps = 22/215 (10%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GR   K+   A + +  +S +  +   C    + +++ +++  +   +     RH F +
Sbjct: 38  GGRSSSKSWDAAGIAI-FLSNKYTLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRI 96

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
            +  +                 +    +    +     +            ++ +EA   
Sbjct: 97  LNNKIINRV-------------TGSEFVFYGLWR----NIEEIKSLEGIDMLWLEEAHAL 139

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRYQIDTRTVEGID 262
            +   K +     +     ++I   N   +  + +  F   P E     +I+      + 
Sbjct: 140 TEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEGTLIRKINYDENPFLS 197

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297
               + I +    D D  +    G  P+ + +  I
Sbjct: 198 DTMLKVIDAARRRDPDGFKHVYEGV-PESDDDAAI 231


>gi|281600057|gb|ADA73041.1| putative bacteriophage protein [Shigella flexneri 2002017]
          Length = 233

 Score = 70.0 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/215 (11%), Positives = 66/215 (30%), Gaps = 22/215 (10%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GR   K+   A + +  +S +  +   C    + +++ +++  +   +     RH F +
Sbjct: 36  GGRSSSKSWDAAGIAI-FLSNKYTLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRI 94

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
            +  +                 +    +    +     +            ++ +EA   
Sbjct: 95  LNNKIINRV-------------TGSEFVFYGLWR----NIEEIKSLEGIDMLWLEEAHAL 137

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRYQIDTRTVEGID 262
            +   K +     +     ++I   N   +  + +  F   P E     +I+      + 
Sbjct: 138 TEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEGTLIRKINYDENPFLS 195

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297
               + I +    D D  +    G  P+ + +  I
Sbjct: 196 DTMLKVIDAARRRDPDGFKHVYEGV-PESDDDAAI 229


>gi|313649580|gb|EFS14005.1| hypothetical protein SF2457T_1962 [Shigella flexneri 2a str. 2457T]
 gi|332761193|gb|EGJ91479.1| hypothetical protein SF274771_0829 [Shigella flexneri 2747-71]
 gi|333008085|gb|EGK27561.1| hypothetical protein SFK218_0991 [Shigella flexneri K-218]
          Length = 227

 Score = 70.0 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/215 (11%), Positives = 66/215 (30%), Gaps = 22/215 (10%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GR   K+   A + +  +S +  +   C    + +++ +++  +   +     RH F +
Sbjct: 30  GGRSSSKSWDAAGIAI-FLSNKYTLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRI 88

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
            +  +                 +    +    +     +            ++ +EA   
Sbjct: 89  LNNKIINRV-------------TGSEFVFYGLWR----NIEEIKSLEGIDMLWLEEAHAL 131

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRYQIDTRTVEGID 262
            +   K +     +     ++I   N   +  + +  F   P E     +I+      + 
Sbjct: 132 TEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEGTLIRKINYDENPFLS 189

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297
               + I +    D D  +    G  P+ + +  I
Sbjct: 190 DTMLKVIDAARRRDPDGFKHVYEGV-PESDDDAAI 223


>gi|331028117|ref|YP_004421831.1| phage terminase large subunit [Roseobacter phage RDJL Phi 1]
 gi|301341580|gb|ADK73464.1| phage terminase large subunit [Roseobacter phage RDJL Phi 1]
          Length = 452

 Score = 69.6 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 73/278 (26%), Gaps = 25/278 (8%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGM----SIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            GRG  K+   A +++     R         +     +  LK+++   +   +       
Sbjct: 24  GGRGGAKSHSFAEVLVDKGYERGRGDGTFRWLFAREIQGSLKDSVKKLLEDKIRSQGLGP 83

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             E        +G+Y        G D +   +        R +             + +E
Sbjct: 84  KEEGG------NGFYRITERTITGGDGRTEFLFA----GLRTNPDSVKSMEGLDGAWVEE 133

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF--NIPLEDWKRYQIDTRT 257
           A+         +     +     +W    N   +     + F    P       ++    
Sbjct: 134 ANKVSQRSIDLLTPTVRKPGSELWWSF--NRGSVKDPVDNRFLGGTPPPRSLIRKVGWED 191

Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317
                   +E ++     D D       G       +    +  +E     +        
Sbjct: 192 NPWFPQDLYEEMMWDKARDHDKWLHVWEGHPVTMSESRVFQNWTVE---DIDDQVPEGCI 248

Query: 318 LIMGCDIAGEGGDKTVVVFRR--GNIIEHIFD-WSAKL 352
             MG D  G   D +V+V     G  +    + W  KL
Sbjct: 249 PRMGAD-WGFANDPSVLVLVYIFGRTMYIRAERWKLKL 285


>gi|56560985|ref|YP_161401.1| hypothetical protein BGP116 [Borrelia garinii PBi]
 gi|52696625|gb|AAU85966.1| hypothetical protein BGP116 [Borrelia garinii PBi]
          Length = 336

 Score = 69.6 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 80/235 (34%), Gaps = 24/235 (10%)

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           +  + ++ ++     N  IF     + RG GKT   A + L    +  G   + I   + 
Sbjct: 3   LRRLPIYVNAYKEKPNAEIF--IYYSSRGTGKTYDIATVNLERKFSVDGGDTLAIRKKKN 60

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
           +   ++  E+ + LS+   R +F +    +            S+    K   +      E
Sbjct: 61  KTTQSIHKEILELLSIYSLRKFFNISKAKIESK---------SLIFGKKRAFVF-----E 106

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
              DT      TH   ++ +EA+       + ++    E     +    SN    + W Y
Sbjct: 107 GGHDTRDLKSYTHFKDLWLEEANQFSSDDIEMLIPTMREQGGRIYMS--SNPVPKSHWLY 164

Query: 239 DIFNIPLEDW--KRYQIDTRTVEGID----SGFHEGIISRYGLDSDVARIEILGQ 287
             +    ++      +   R    ++      + E     Y  +    RIE+LG+
Sbjct: 165 KRYLANQDNPAVCIIKSTYRDNPFLNGGDVEAWLEKQKLAYHGNDIGFRIEVLGE 219


>gi|108760232|ref|YP_629471.1| hypothetical protein MXAN_1212 [Myxococcus xanthus DK 1622]
 gi|108464112|gb|ABF89297.1| conserved hypothetical protein [Myxococcus xanthus DK 1622]
          Length = 471

 Score = 69.6 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 34/306 (11%), Positives = 73/306 (23%), Gaps = 41/306 (13%)

Query: 48  FSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107
           F      ++E +            +       C + AGRG GKT   A  ++        
Sbjct: 41  FGGLDDKEVELLVYDLDFWARREQSPPDKFSTCFVMAGRGFGKTWCGARWVIKKAWQAK- 99

Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
                I  +   +++T+    S  L++ P     + +      +                
Sbjct: 100 SVGALIGPTAADVRDTMIRGASGILALSPPWFTPKYEPSKRRVT---------------- 143

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT----ELNPNRF 223
                         D        +    + DE +     +                    
Sbjct: 144 --WPNGVYAICYSADKPDRLRGPNAGWGWGDEPASWKHDMAAVDQLPLVLRIGSREDPPQ 201

Query: 224 WIMTSNTRRLNGWFYDIFNIPL----EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279
            ++T   R L      +F        +     +  +      +         R   ++  
Sbjct: 202 LLLTGTPRPLKKIEELLFANAETQELKPGVVLRTGSSLSNFANLAPSAVANMRALANTRW 261

Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY------APLIMGCDI---AGEGGD 330
            + E+LG+                 A       D +         I+  D    +  G D
Sbjct: 262 GQQEVLGRLLFDVPGAIFG-----SAKWGRVEADAHEYAQQLDRRIVSVDPSPTSETGSD 316

Query: 331 KTVVVF 336
           +T ++ 
Sbjct: 317 ETGIIV 322


>gi|66394679|ref|YP_240816.1| ORF009 [Staphylococcus phage X2]
 gi|62636903|gb|AAX92014.1| ORF009 [Staphylococcus phage X2]
          Length = 421

 Score = 69.6 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/275 (12%), Positives = 77/275 (28%), Gaps = 25/275 (9%)

Query: 72  NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131
             +  I       GRG GK++  + ++   +  R  M+ + I  ++  L  +++ ++   
Sbjct: 22  TKDKEILNIVAKGGRGSGKSSDISIIIT-QLIMRYPMNAVVIRKTDNTLATSVFEQIKWA 80

Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
           +      H F+++   +             +    +   I  R          +      
Sbjct: 81  IEEQKVSHLFKVKVSPM------------EITYIPRGNRIIFRGAQNPERLKSLKDSRFP 128

Query: 192 GMAVFNDE-ASGTPDIINKSILGFF----TELNPNRFWIMTSNTR-RLNGWFYDIFN--I 243
               + +E A    +    +I         +      +  + N   R   W    +    
Sbjct: 129 FSISWIEELAEFKTEDEVTTITNSLLRGELDEGLFYKFFFSYNPPKRKQSWVNKKYESSF 188

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
             ++   +         I   F +   S    +    R E +G+         +P N + 
Sbjct: 189 QADNTYVHHSTYLNNPFISKQFIQEAESAKKRNEQRYRWEYMGEAIGSG---VVPFNNLR 245

Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
                +   D +  +    D  G   D    V   
Sbjct: 246 IEEIPQRQYDTFDNIRNAVDF-GYATDPLAFVRWH 279


>gi|257468179|ref|ZP_05632275.1| putative terminase large subunit - phage associated protein
           [Fusobacterium ulcerans ATCC 49185]
 gi|317062464|ref|ZP_07926949.1| terminase large subunit G2p [Fusobacterium ulcerans ATCC 49185]
 gi|313688140|gb|EFS24975.1| terminase large subunit G2p [Fusobacterium ulcerans ATCC 49185]
          Length = 429

 Score = 69.6 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 90/293 (30%), Gaps = 14/293 (4%)

Query: 62  VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121
           +       V   N    +  +  GRG  K+T  A M++  + + P ++IIC    +  L+
Sbjct: 3   IPKFWEVWVAWKNFDYLRYVLKGGRGSAKSTHIALMLVLTLISEP-INIICFRKIKDNLE 61

Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
            +++ ++ K + +L    +F  ++  L              G+D    T +  T +    
Sbjct: 62  TSVYEQIKKAIQLLGIEEFFVFKTSPLEIIYKERGNQFIFRGLDKAEKTKSIVTANFPIG 121

Query: 182 DTFVGPHNTHGMAVFNDEA------SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
             +             + A          +    ++LG             + N  R   
Sbjct: 122 AWWFEELAEFKNEKEVETAIKSILRENLKEYEYTNMLGEKKIKKMKYRGFFSYNPPREKQ 181

Query: 236 WFYDI---FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292
            + +    F+   ++   +         I + F E   +    D    R E LG+   Q 
Sbjct: 182 HWVNQKYSFSTKPQNTFVHHSTYLDNPYISTEFKEDAQATKEKDPTTYRGEFLGEVVGQG 241

Query: 293 VNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHI 345
               IP   +      +     +     G D  G G D         + +  I
Sbjct: 242 ---IIPFPNLILRKITDQEIRSFDNFRNGID-WGYGVDPVAFGRWHWDSMRRI 290


>gi|203288763|ref|YP_002223713.1| hypothetical protein BDU_2013 [Borrelia duttonii Ly]
 gi|201084613|gb|ACH94190.1| uncharacterized conserved protein [Borrelia duttonii Ly]
          Length = 398

 Score = 69.6 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 70/210 (33%), Gaps = 22/210 (10%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           + RG GKT   A + L     + G   + +   + +   ++  E+ + LS    R  F +
Sbjct: 27  SSRGTGKTYDIATVNLERKFAKDGGDTLAVRKKKNKTTQSIHKEILELLSRYNLRREFTI 86

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
               +           + +    K   +      E   DT       H   ++ +EA+  
Sbjct: 87  SKAKI---------ETKKLIYGRKRAFVF-----EGGHDTTDLKSYAHFKDLWLEEANQF 132

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW--KRYQIDTRTVEGI 261
            +   + ++    E     +    SN    + W Y  +    ++      +   R    +
Sbjct: 133 TESDIEKLIPTMRERGGRIYMS--SNPVPRSHWLYKRYIANEDNPSVCVIKSTYRDNPFL 190

Query: 262 D----SGFHEGIISRYGLDSDVARIEILGQ 287
           +    + + E     Y  +    RIE+LG+
Sbjct: 191 NGGDVNAWLEKQKLAYHGNDIGFRIEVLGE 220


>gi|56560912|ref|YP_161331.1| hypothetical protein BGP046 [Borrelia garinii PBi]
 gi|52696553|gb|AAU85896.1| hypothetical protein BGP046 [Borrelia garinii PBi]
          Length = 450

 Score = 69.6 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 89/302 (29%), Gaps = 35/302 (11%)

Query: 43  KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102
           KP        +++ E +         ++  +N    K  +S G   GKT L  ++ +  +
Sbjct: 29  KPTNSSIHFDQFEKEHLTVKQNRVIKSIQKNNEK--KIILSGGIASGKTYLACYLFIKSL 86

Query: 103 STRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
            +         +   I NS+  ++  +  +  K   +L   +     + S          
Sbjct: 87  LSNKKLYSSDTNNFIIGNSQRSVEVNVLGQFEKLCKLLDISYIPRHTNNSYIMIDSLRIN 146

Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217
                             Y  ++   F     ++   +F +EA+       + +L     
Sbjct: 147 -----------------LYGGDKASDFERFRGSNSTLIFVNEATTLHKQTLEEVLKRL-- 187

Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277
                  I  +N      +F   +   +  +K Y   T     +  GF E     Y    
Sbjct: 188 RCGQETIIFDTNPDHPEHYFKTDYIDNVATFKTYNFTTYDNVLLSKGFIETQEKLYKEIP 247

Query: 278 DVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
                 +LG++     + F   N  ++ +            I   D A   GGD T +  
Sbjct: 248 TYKARVLLGEWIASTDSIFTQINITQDYVFTSP--------IAYLDPAFSIGGDNTALCV 299

Query: 337 RR 338
             
Sbjct: 300 MD 301


>gi|195942183|ref|ZP_03087565.1| hypothetical protein Bbur8_04905 [Borrelia burgdorferi 80a]
 gi|219786709|ref|YP_002477434.1| phage terminase, large subunit, pbsx family protein [Borrelia
           burgdorferi 156a]
 gi|219692709|gb|ACL33925.1| phage terminase, large subunit, pbsx family protein [Borrelia
           burgdorferi 156a]
 gi|312148688|gb|ADQ31340.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           JD1]
 gi|312148897|gb|ADQ31544.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           JD1]
 gi|312201269|gb|ADQ44578.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
           297]
          Length = 396

 Score = 69.2 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 78/235 (33%), Gaps = 24/235 (10%)

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           +  + V+  +     N  IF     + RG GKT   A + L    +  G   + I   + 
Sbjct: 3   LRRLPVYVDAYKEKPNAEIF--IYYSSRGTGKTYDIATVNLERKFSADGGDTLAIRKKKN 60

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
           +   ++  E+ + LS+   R +F +    +            S+    K   +      E
Sbjct: 61  KTTQSIHKEILELLSIYNLRKFFNISKAKIESK---------SLIFGKKRAFVF-----E 106

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
              DT       H   ++ +EA+       + ++    E     +    SN    + W Y
Sbjct: 107 GGHDTRDLKSYAHFKDLWLEEANQFSADDIEMLIPTMREQGGRIYMS--SNPVPKSHWLY 164

Query: 239 DIFNIPLEDW--KRYQIDTRTVEGID----SGFHEGIISRYGLDSDVARIEILGQ 287
             +    ++      +   R    ++      + E     Y  +    RIE+LG+
Sbjct: 165 KRYLSNQDNPAVCIIKSTYRDNPFLNGGDVQAWLEKQRLAYHGNDIGFRIEVLGE 219


>gi|333007271|gb|EGK26754.1| hypothetical protein SFVA6_1126 [Shigella flexneri VA-6]
          Length = 235

 Score = 69.2 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 24/215 (11%), Positives = 66/215 (30%), Gaps = 22/215 (10%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GR   K+   A + +  +S +  +   C    + +++ +++  +   +     RH F +
Sbjct: 38  GGRSSSKSWDAAGIAI-FLSNKYTLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRI 96

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
            +  +                 +    +    +     +            ++ +EA   
Sbjct: 97  LNNKIINRV-------------TGSEFVFYGLWR----NIEEIKSLEGIDVLWLEEAHAL 139

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRYQIDTRTVEGID 262
            +   K +     +     ++I   N   +  + +  F   P E     +I+      + 
Sbjct: 140 TEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEGTLIRKINYDENPFLS 197

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297
               + I +    D D  +    G  P+ + +  I
Sbjct: 198 DTMLKVIDAARRRDPDGFKHVYEGV-PESDDDAAI 231


>gi|110804741|ref|YP_688261.1| putative bacteriophage protein [Shigella flexneri 5 str. 8401]
 gi|110614289|gb|ABF02956.1| putative bacteriophage protein [Shigella flexneri 5 str. 8401]
          Length = 233

 Score = 69.2 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 24/215 (11%), Positives = 66/215 (30%), Gaps = 22/215 (10%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GR   K+   A + +  +S +  +   C    + +++ +++  +   +     RH F +
Sbjct: 36  GGRSSSKSWDAAGIAI-FLSNKYTLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRI 94

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
            +  +                 +    +    +     +            ++ +EA   
Sbjct: 95  LNNKIINRV-------------TGSEFVFYGLWR----NIEEIKSLEGIDVLWLEEAHAL 137

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRYQIDTRTVEGID 262
            +   K +     +     ++I   N   +  + +  F   P E     +I+      + 
Sbjct: 138 TEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEGTLIRKINYDENPFLS 195

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297
               + I +    D D  +    G  P+ + +  I
Sbjct: 196 DTMLKVIDAARRRDPDGFKHVYEGV-PESDDDAAI 229


>gi|224797098|ref|YP_002642985.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           CA-11.2a]
 gi|224554508|gb|ACN55891.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           CA-11.2a]
          Length = 396

 Score = 69.2 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 78/235 (33%), Gaps = 24/235 (10%)

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           +  + V+  +     N  IF     + RG GKT   A + L    +  G   + I   + 
Sbjct: 3   LRRLPVYVDAYKEKPNAEIF--IYYSSRGTGKTYDIATVNLERKFSADGGDTLAIRKKKN 60

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
           +   ++  E+ + LS+   R +F +    +            S+    K   +      E
Sbjct: 61  KTTQSIHKEILELLSIYNLRKFFNISKAKIESK---------SLIFGKKRAFVF-----E 106

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
              DT       H   ++ +EA+       + ++    E     +    SN    + W Y
Sbjct: 107 GGHDTRDLKSYAHFKDLWLEEANQFSSDDIEMLIPTMREQGGRIYMS--SNPVPKSHWLY 164

Query: 239 DIFNIPLEDW--KRYQIDTRTVEGID----SGFHEGIISRYGLDSDVARIEILGQ 287
             +    ++      +   R    ++      + E     Y  +    RIE+LG+
Sbjct: 165 KRYLSNQDNPAVCIIKSTYRDNPFLNGGDVQAWLEKQKLAYHGNDIGFRIEVLGE 219


>gi|333010102|gb|EGK29537.1| hypothetical protein SFK272_0968 [Shigella flexneri K-272]
          Length = 227

 Score = 69.2 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 24/215 (11%), Positives = 66/215 (30%), Gaps = 22/215 (10%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GR   K+   A + +  +S +  +   C    + +++ +++  +   +     RH F +
Sbjct: 30  GGRSSSKSWDAAGIAI-FLSNKYTLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRI 88

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
            +  +                 +    +    +     +            ++ +EA   
Sbjct: 89  LNNKIINRV-------------TGSEFVFYGLWR----NIEEIKSLEGIDVLWLEEAHAL 131

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRYQIDTRTVEGID 262
            +   K +     +     ++I   N   +  + +  F   P E     +I+      + 
Sbjct: 132 TEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEGTLIRKINYDENPFLS 189

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297
               + I +    D D  +    G  P+ + +  I
Sbjct: 190 DTMLKVIDAARRRDPDGFKHVYEGV-PESDDDAAI 223


>gi|194100463|ref|YP_002003836.1| gp19 [Klebsiella phage K11]
 gi|193201402|gb|ACF15880.1| gp19 [Klebsiella phage K11]
          Length = 585

 Score = 69.2 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 49/392 (12%), Positives = 102/392 (26%), Gaps = 86/392 (21%)

Query: 13  QELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNN 72
           Q+    L+ A+    F  F+  F  W     P     +P + Q++  + +          
Sbjct: 5   QQAKNALIIAQLKGDFVAFL--FVLWKALNLP-----EPTKCQIDMAKCLA--------- 48

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
            NP   K  + A RGIGK+ +    ++W +   P + I+ ++ S+ +        +   +
Sbjct: 49  -NPKNKKFILQAFRGIGKSFITCAFVVWTLWRDPQLKILIVSASKERADANSIF-IKNII 106

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAE-LLEQSMGIDSKHYTITCRTY----------SEERP 181
            +LP     + +         +     +       K   IT +              E P
Sbjct: 107 DLLPFLSELKPRPGQRDSVISFDVGPAKPDHSPSVKSVGITGQLTGSRADIIIADDVEIP 166

Query: 182 DTFVGPHNTHGMAVFNDEASGT-------------PDIINKSILGFFTE--LNPNRFWIM 226
                      +     E +                     ++     +        W  
Sbjct: 167 GNSATQGAREKLWTLVQEFAALLKPLPTSRVIYLGTPQTEMTLYKELEDNRGYSTIIWPA 226

Query: 227 TSNTRRLNGWFYDIFNIP------LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280
                +    +Y     P       ED +            DS   +     YG      
Sbjct: 227 QYPRSKEEDLYYGDRLAPMLRSEYDEDKEGLSSQPTDPVRFDSMDLQEREVEYGKAGYTL 286

Query: 281 RIEI-----LGQ-FPQQEVNNFI-PHNYIEEAMSREAIDD-------------------- 313
           +  +       + +P +  +  +      +  M  + + +                    
Sbjct: 287 QFMLNPNLSDAEKYPLRLRDAIVCGLQMDKAPMHYQWLPNRQNRNEELPNVGMKGDEIYS 346

Query: 314 ---------LYAPLIMGCDIAGEGGDKTVVVF 336
                     Y   I+  D +G G D+T    
Sbjct: 347 FHTASSNTGAYQGKILVIDPSGRGKDETGWCV 378


>gi|66395738|ref|YP_240074.1| ORF009 [Staphylococcus phage 37]
 gi|62636161|gb|AAX91272.1| ORF009 [Staphylococcus phage 37]
          Length = 419

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 88/293 (30%), Gaps = 30/293 (10%)

Query: 57  EFMEAVDVHCHSN-VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
           +  E +  H HS      +          GRG GK++  A +++ L+  R  ++ + +  
Sbjct: 4   KLSELIPEHFHSLWHAAKDKGKLNIVAKGGRGSGKSSDIAIIIV-LLIMRYPVNALILRK 62

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
            +  L  +++ ++   ++++   H F+++   +             +    +   +  R 
Sbjct: 63  IDNTLALSVFEQIKWAINVMGVSHLFKIKVSPM------------EITYVPRGNKMVFRG 110

Query: 176 YSEERPDTFVGPHNTHG--MAVFNDE-ASGTPDIINKSILGFFTEL----NPNRFWIMTS 228
                P+      +        + +E A    +    +I                +  T 
Sbjct: 111 AQ--NPERIKSLKDAQFPYAIAWIEELAEFKTEDEVTTITNSLLRGELDNGLFYKFFYTY 168

Query: 229 NTR-RLNGWFYDIFN--IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
           N   R   W    +      ++   +         I   F E   +   ++    R E L
Sbjct: 169 NPPKRKQSWVNKKYESSFQPDNTFVHHSTYLNNPFIAKEFIEEAKAAKAINELRYRWEYL 228

Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
           G+         +P N +      +   D +  +    D  G   D    V   
Sbjct: 229 GEAIGSG---VVPFNNLRIETIPKEQFDTFDNIRNAVDF-GYATDPLAFVRWH 277


>gi|256956800|ref|ZP_05560971.1| terminase large subunit [Enterococcus faecalis DS5]
 gi|256947296|gb|EEU63928.1| terminase large subunit [Enterococcus faecalis DS5]
          Length = 424

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/267 (12%), Positives = 81/267 (30%), Gaps = 11/267 (4%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
           N  I       GRG GK++  A  ++  +  R  ++ + I   +  L+ +++ ++   + 
Sbjct: 24  NSDILNIVCKGGRGSGKSSDIA-HIITQLLMRYAVNAVGIRYVDNTLEQSIYEQMKWAIE 82

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
                H F+     L  +           G  +     + +         ++        
Sbjct: 83  QQGVTHLFKFNKSPLRITYIPRGNYMIFRGAQNPERIKSLKDSRFPFAIGWIEELGEFKT 142

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN--IPLEDWKRY 251
               DE +   + +   + G        +F+   +  +R   W    +      E+   +
Sbjct: 143 ---EDEVTTITNSL---LRGELGNGLFYKFFFSYNPPKRRQSWVNKKYESSFQPENTFVH 196

Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311
               +    I   F + + +    +   AR E  G+           +  +E+    + +
Sbjct: 197 HSTYKDNPFISREFLKEVEAARDRNPLRARWEYDGE-AIGSGVVPFSNLKVEKGCITDEM 255

Query: 312 DDLYAPLIMGCDIAGEGGDKTVVVFRR 338
              +  +  G D  G   D    V   
Sbjct: 256 VANFDNIRNGLDF-GYATDPLAFVRWH 281


>gi|295113782|emb|CBL32419.1| phage terminase, large subunit, PBSX family [Enterococcus sp. 7L76]
 gi|315035888|gb|EFT47820.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
           TX0027]
          Length = 425

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/267 (12%), Positives = 81/267 (30%), Gaps = 11/267 (4%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
           N  I       GRG GK++  A  ++  +  R  ++ + I   +  L+ +++ ++   + 
Sbjct: 25  NSDILNIVCKGGRGSGKSSDIA-HIITQLLMRYAVNAVGIRYVDNTLEQSIYEQMKWAIE 83

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
                H F+     L  +           G  +     + +         ++        
Sbjct: 84  QQGVTHLFKFNKSPLRITYIPRGNYMIFRGAQNPERIKSLKDSRFPFAIGWIEELGEFKT 143

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN--IPLEDWKRY 251
               DE +   + +   + G        +F+   +  +R   W    +      E+   +
Sbjct: 144 ---EDEVTTITNSL---LRGELGNGLFYKFFFSYNPPKRRQSWVNKKYESSFQPENTFVH 197

Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311
               +    I   F + + +    +   AR E  G+           +  +E+    + +
Sbjct: 198 HSTYKDNPFISREFLKEVEAARDRNPLRARWEYDGE-AIGSGVVPFSNLKVEKGCITDEM 256

Query: 312 DDLYAPLIMGCDIAGEGGDKTVVVFRR 338
              +  +  G D  G   D    V   
Sbjct: 257 VANFDNIRNGLDF-GYATDPLAFVRWH 282


>gi|169334313|ref|ZP_02861506.1| hypothetical protein ANASTE_00711 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259030|gb|EDS72996.1| hypothetical protein ANASTE_00711 [Anaerofustis stercorihominis DSM
           17244]
          Length = 488

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/302 (10%), Positives = 81/302 (26%), Gaps = 48/302 (15%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            G G GK+       ++ I      +++    +    + + +A   + +       +F +
Sbjct: 35  GGAGSGKSVFVVQRYVYKILNSDLCNVLVARKTGNTNRTSTFALFKQVIYKWNLGEYFLI 94

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
               +  +    +      G+D      +    + E  D            V+ +EAS  
Sbjct: 95  NKSDMSITCKLNKNQIIFKGLDDVEKIKSTTFETGELTD------------VWIEEASEI 142

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
            +   K +          +  +M+ N   +   +  +  I  +         +    ID 
Sbjct: 143 EEDDYKQLNVRLRGGKSKKQIVMSLNPIDI-NHWIKLKLINEDKATYLHTTYKDNRFIDE 201

Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA------- 316
            +   + S    D     +  LG +     ++      +   ++++              
Sbjct: 202 DYKRELESYKDTDIYYYNVYCLGMW-GVLGDSVFDVGVVNNQLAKDIRPVKRGYFLYDYD 260

Query: 317 ---------------------------PLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS 349
                                      P ++G D AG+G D            + +    
Sbjct: 261 GKDITNIRWIEDAGGYINIYEDVKGRYPYVIGGDTAGDGSDNFTAHVINNVTGQQVCTMK 320

Query: 350 AK 351
            K
Sbjct: 321 NK 322


>gi|224796986|ref|YP_002642738.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           WI91-23]
 gi|224553700|gb|ACN55104.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           WI91-23]
 gi|312149848|gb|ADQ29915.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           N40]
          Length = 396

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 78/235 (33%), Gaps = 24/235 (10%)

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           +  + V+  +     N  IF     + RG GKT   A + L    +  G   + I   + 
Sbjct: 3   LRRLPVYVDAYKEKPNAEIF--IYYSSRGTGKTYDIATVNLERKFSADGGDTLAIRKKKN 60

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
           +   ++  E+ + LS+   R +F +    +            S+    K   +      E
Sbjct: 61  KTTQSIHKEILELLSIYNLRKFFNISKAKIESK---------SLIFGKKRAFVF-----E 106

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
              DT       H   ++ +EA+       + ++    E     +    SN    + W Y
Sbjct: 107 GGHDTRDLKSYAHFKDLWLEEANQFSADDIEMLVPTMREQGGRIYMS--SNPVPKSHWLY 164

Query: 239 DIFNIPLEDW--KRYQIDTRTVEGID----SGFHEGIISRYGLDSDVARIEILGQ 287
             +    ++      +   R    ++      + E     Y  +    RIE+LG+
Sbjct: 165 KRYLSNQDNPAVCIIKSTYRDNPFLNGGDVQAWLEKQRLAYHGNDIGFRIEVLGE 219


>gi|226234361|ref|YP_002775493.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           29805]
 gi|226201889|gb|ACO38473.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           29805]
          Length = 396

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 78/235 (33%), Gaps = 24/235 (10%)

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           +  + V+  +     N  IF     + RG GKT   A + L    +  G   + I   + 
Sbjct: 3   LRRLPVYVDAYKEKPNAEIF--IYYSSRGTGKTYDIATVNLERKFSADGGDTLAIRKKKN 60

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
           +   ++  E+ + LS+   R +F +    +            S+    K   +      E
Sbjct: 61  KTTQSIHKEILELLSIYNLRKFFNISKAKIESK---------SLIFGKKRAFVF-----E 106

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
              DT       H   ++ +EA+       + ++    E     +    SN    + W Y
Sbjct: 107 GGHDTRDLKSYAHFKDLWLEEANQFSADDIEMLVPTMREQGGRIYMS--SNPVPKSHWLY 164

Query: 239 DIFNIPLEDW--KRYQIDTRTVEGID----SGFHEGIISRYGLDSDVARIEILGQ 287
             +    ++      +   R    ++      + E     Y  +    RIE+LG+
Sbjct: 165 KRYLSNQDNPAVCIIKSTYRDNPFLNGGDVQAWLEKQRLAYHGNDIGFRIEVLGE 219


>gi|11496682|ref|NP_045481.1| hypothetical protein BBG21 [Borrelia burgdorferi B31]
 gi|218868779|ref|YP_002455248.1| phage terminase, large subunit, pbsx family protein [Borrelia
           burgdorferi ZS7]
 gi|224796961|ref|YP_002642637.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           WI91-23]
 gi|224985496|ref|YP_002642672.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           64b]
 gi|225548803|ref|YP_002724009.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           118a]
 gi|2690026|gb|AAC66069.1| predicted coding region BBG21 [Borrelia burgdorferi B31]
 gi|218165273|gb|ACK75330.1| phage terminase, large subunit, pbsx family protein [Borrelia
           burgdorferi ZS7]
 gi|223929545|gb|ACN24257.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           64b]
 gi|224554186|gb|ACN55578.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           WI91-23]
 gi|225546810|gb|ACN92808.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           118a]
          Length = 396

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 78/235 (33%), Gaps = 24/235 (10%)

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           +  + V+  +     N  IF     + RG GKT   A + L    +  G   + I   + 
Sbjct: 3   LRRLPVYVDAYKEKPNAEIF--IYYSSRGTGKTYDIATVNLERKFSADGGDTLAIRKKKN 60

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
           +   ++  E+ + LS+   R +F +    +            S+    K   +      E
Sbjct: 61  KTTQSIHKEILELLSIYNLRKFFNISKAKIESK---------SLIFGKKRAFVF-----E 106

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
              DT       H   ++ +EA+       + ++    E     +    SN    + W Y
Sbjct: 107 GGHDTRDLKSYAHFKDLWLEEANQFSADDIEMLVPTMREQGGRIYMS--SNPVPKSHWLY 164

Query: 239 DIFNIPLEDW--KRYQIDTRTVEGID----SGFHEGIISRYGLDSDVARIEILGQ 287
             +    ++      +   R    ++      + E     Y  +    RIE+LG+
Sbjct: 165 KRYLSNQDNPAVCIIKSTYRDNPFLNGGDVQAWLEKQRLAYHGNDIGFRIEVLGE 219


>gi|315034678|gb|EFT46610.1| conserved hypothetical protein [Enterococcus faecalis TX0027]
          Length = 519

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/262 (12%), Positives = 61/262 (23%), Gaps = 21/262 (8%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS--KWLSMLP 136
              +      GK+ L++ + +WL               +      +       + +    
Sbjct: 82  NIIVVTPSQYGKSWLSSRIAVWLADHN--RRCYVAGGKKDTTDIIMQHVTDTLQTVDESI 139

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
            R   E            ++      G  S         +   +                
Sbjct: 140 ARKLLEPVDKLERLQTGLSKRKISFSGGGSIEGISLGEHFKGNKSGNQAIGRGGD---YI 196

Query: 197 NDEASGTPDIINKSI--LGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254
            DE++   +     +    F      N      SN     G FYD         K   + 
Sbjct: 197 IDESAFVSNETYAELGRRNFANVDGKNYLSFEISNP-HNKGRFYDKLTQ-ENIPKGMLVV 254

Query: 255 TRTVEGIDSGFHEGIISR-----YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309
              V           I +     +  +    +   L + P +  +        E     E
Sbjct: 255 WADVRTAFEEDRVKSIEQVISSEFFQNKSTCQRYFLCELPDENEDGMFGTPQTE-----E 309

Query: 310 AIDDLYAPLIMGCDIAGEGGDK 331
              +      +G D A +G DK
Sbjct: 310 EHTEKDWEYFLGVDSAYKGKDK 331


>gi|48697520|ref|YP_024878.1| gp33 TerL [Burkholderia phage BcepB1A]
 gi|47717490|gb|AAT37736.1| gp33 TerL [Burkholderia phage BcepB1A]
          Length = 532

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 58/198 (29%), Gaps = 11/198 (5%)

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGP-HNTHGMAVFNDEASGTPDIINKSILGFF 215
                    S    I   T +  R +              F DEA+   +          
Sbjct: 163 WNPHDHTHSSHMRVIIPDTGAVIRGEAGKNIGRGGRVSIQFVDEAAHLENAQAVDTALAA 222

Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275
           T        I  S+   LN  F +         K   +  R     D  +++    ++  
Sbjct: 223 TTNCR----IDISSVNGLNNPFAEK--RFSGRVKVKTMHWRDDPRKDDEWYKKQKQKF-- 274

Query: 276 DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTV 333
           ++ V   EI   +        IP  +I+ A+  +      +        D+A EG D   
Sbjct: 275 NALVVAQEIDIDYSASAEGVLIPLEWIDAAIDADVKLGLTVTGQRFSSLDVADEGKDMNA 334

Query: 334 VVFRRGNIIEHIFDWSAK 351
              R G  +++   WS K
Sbjct: 335 FGSRLGIRMDYAESWSGK 352


>gi|169825333|ref|YP_001691226.1| hypothetical protein M446_6968 [Methylobacterium sp. 4-46]
 gi|168199255|gb|ACA21201.1| hypothetical protein M446_6968 [Methylobacterium sp. 4-46]
          Length = 466

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/304 (11%), Positives = 82/304 (26%), Gaps = 44/304 (14%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-------- 108
           E    +   C          + +  +  GR  GK+ + A + ++L + R           
Sbjct: 40  EAELEIFRACTGREVPPTTPMAEAHLPTGRRAGKSFVLALIAVYLAAFREYRGYLAPGER 99

Query: 109 -SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
            +++ +A    Q +  ++      L+  P       +  +          +E        
Sbjct: 100 ATVMVLAADRRQAR-VIFRYCKGLLAGSPLLANLIERETAEALDLANGVTIEI------- 151

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--------PD-IINKSILGFFTEL 218
                          +          AV  DE +          PD  I  ++      +
Sbjct: 152 ------------GTASVKTTRGYSLAAVLCDEIAFWETSEDSASPDYEILNALRPGMATI 199

Query: 219 NPNRFWIMTSNTRRLNGWFYDIF--NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLD 276
             +      S+     G  +D F  +   ++         T     +     I   Y  D
Sbjct: 200 PGSVLLCA-SSPYARKGALWDAFSRHFGQDNSDVLVWRAATRVMNPTVPERTIDEAYQRD 258

Query: 277 SDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAGEGGDKTVV 334
              A  E   +F + ++ +F+  + ++  +              +   D +G   D   +
Sbjct: 259 PAAAAAEYGAEF-RSDIESFVSLDVVKACIDSGVMERLRHAGRHVAFVDPSGGSADSMTL 317

Query: 335 VFRR 338
               
Sbjct: 318 AIAH 321


>gi|262039737|ref|ZP_06013017.1| phage terminase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|259042904|gb|EEW43895.1| phage terminase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 432

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 69/259 (26%), Gaps = 26/259 (10%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGM----SIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            GRG  KT   A M                I+C       L+ +   EV + +  +P   
Sbjct: 29  GGRGSAKTRTFALMSAVKAYQAAESGLSGVILCAREFMNSLEESSMEEVKQAIRSVP--- 85

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                        W  +  +                +   R +          +  + DE
Sbjct: 86  -------------WLDDYFDIGEKYIRTKNRNVSYVFCGLRHNLDSIKSKARILVAWVDE 132

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTV 258
           A        K +     E      W+   N  +       +F   P +     +++    
Sbjct: 133 AESVSATAWKKLRPTVRENGSE-IWVTW-NPEKDGSATDKLFRKNPPKSSMIVEMNYSDN 190

Query: 259 EGI-DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317
               D    E +     LD         G + +      + + Y+ ++   + +      
Sbjct: 191 PWFPDVLEEERLEDLENLDYADYAWIWEGAYLENSDKQVLANKYVVQSFE-DDLWKKSER 249

Query: 318 LIMGCDIAGEGGDKTVVVF 336
           L+ G D  G   D + ++ 
Sbjct: 250 LLFGADF-GFAKDPSTLIR 267


>gi|312116003|ref|YP_004013599.1| hypothetical protein Rvan_3315 [Rhodomicrobium vannielii ATCC
           17100]
 gi|311221132|gb|ADP72500.1| hypothetical protein Rvan_3315 [Rhodomicrobium vannielii ATCC
           17100]
          Length = 466

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/263 (12%), Positives = 67/263 (25%), Gaps = 32/263 (12%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSML 135
           I AGRG GKT   A  +   +                +A +    ++ +    S  L++ 
Sbjct: 61  ILAGRGAGKTRTGAEWVRACVCGPTPLSAGRYSRFALVAETAADARDVIVEGPSGLLAIH 120

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
           P     + +      +                                          A 
Sbjct: 121 PRGFRPKFEPSKRRLT------------------WPNGAVAMLYNATEPDQLRGPQHDAA 162

Query: 196 FNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253
           + DE +           +       +  R  +    T R      +            + 
Sbjct: 163 WCDELAKWRYARETWDMLQFGLRLGHDPRQIVT--TTPRPIAIIREFLGKEGHGVVLTRG 220

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE-AMSREAID 312
            T       +  +   I R    + + R EI  +            + +++  ++R    
Sbjct: 221 STYDNRANLAQNYFNTIVRSYEGTRLGRQEINAELLDDVAGALWTRSLLDQHRIARGTPL 280

Query: 313 DLYAPLIMGCDIAG---EGGDKT 332
             +  +++G D A      GDKT
Sbjct: 281 PRFDRVVVGIDPAARPSGAGDKT 303


>gi|119967835|ref|YP_950664.1| putative large terminase subunit [Staphylococcus phage PH15]
 gi|112790059|gb|ABI21779.1| putative large terminase subunit [Staphylococcus phage PH15]
          Length = 446

 Score = 68.8 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/262 (10%), Positives = 74/262 (28%), Gaps = 24/262 (9%)

Query: 72  NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131
             +          GRG GK++  + ++   +  R  M+ + +  ++  L  +++ ++   
Sbjct: 21  TKDREKLNIVAKGGRGSGKSSDISIIIT-QLIMRYPMNAVVVRKADNTLATSVFEQIKWA 79

Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
           +      H F+++   +             +    +   I  R          +      
Sbjct: 80  IEEQKVSHLFKVKVSPM------------EITYVPRGNRIIFRGAQNPERLKSLKDSRFP 127

Query: 192 GMAVFNDE-ASGTPDIINKSILGFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--I 243
              ++ +E A    +    +I                +  + N   R   W    +    
Sbjct: 128 FSIMWIEELAEFKTEDEVTTITNSMLRGELDDGLFYKFFFSYNPPKRKQSWVNKKYETSF 187

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
             ++   +         I   F +   S    +    R E +G+         +P N ++
Sbjct: 188 QPDNTFVHHSTYLDNPFISKQFIQEAESAKERNEQRYRWEYMGEAIGSG---VVPFNNLQ 244

Query: 304 EAMSREAIDDLYAPLIMGCDIA 325
                + +   +  +    D  
Sbjct: 245 IEKIPDELYKSFDNIRNAVDFG 266


>gi|226315677|ref|YP_002775693.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           29805]
 gi|226202054|gb|ACO38634.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
           29805]
          Length = 396

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 78/235 (33%), Gaps = 24/235 (10%)

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           +  + V+  +     N  IF     + RG GKT   A + L    +  G   + I   + 
Sbjct: 3   LRRLPVYVDAYKEKPNAEIF--IYYSSRGTGKTYDIATVNLERKFSVDGGDTLAIRKKKN 60

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
           +   ++  E+ + LS+   R +F +    +            S+    K   +      E
Sbjct: 61  KTTQSIHKEILELLSIHNLRKFFNISKAKIESK---------SLIFGKKRAFVF-----E 106

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
              DT       H   ++ +EA+       + ++    E     +    SN    + W Y
Sbjct: 107 GGHDTRDLKSYAHFKDLWLEEANQFSADDIEMLIPTMREQGGRIYMS--SNPVPKSHWLY 164

Query: 239 DIFNIPLEDW--KRYQIDTRTVEGID----SGFHEGIISRYGLDSDVARIEILGQ 287
             +    ++      +   R    ++      + E     Y  +    RIE+LG+
Sbjct: 165 KRYLSNQDNPAVCIIKSTYRDNPFLNGGDVQAWLEKQRLAYHGNDIGFRIEVLGE 219


>gi|300772208|ref|ZP_07082078.1| PBSX family phage terminase [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300760511|gb|EFK57337.1| PBSX family phage terminase [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 445

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/268 (11%), Positives = 75/268 (27%), Gaps = 40/268 (14%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
           F   ++ GRG GK+   +  +   ++   G  ++    +      ++  E+   + +   
Sbjct: 18  FIILVTGGRGSGKSFEVSTFVT-RLTFEAGHKVLYSRYTMKSADISVIPEIKGKIDLDGV 76

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
              F ++S  +      +E++ + +   S + T   ++                      
Sbjct: 77  SQHFTVKSEDIVNEYSKSEIMFRGIKTSSGNQTANLKSI-------------EGLTTFVG 123

Query: 198 DEASGT-PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR------ 250
           DE      +     ++    +       I+  N      + Y  +       +       
Sbjct: 124 DEMEEWQSEDDYDKLILSIRKKGIQNRVILIMNPSDDEHFVYKKYIQDTHRVEVIDGVEV 183

Query: 251 ----------YQIDTRTV-EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299
                              E +   F   I          A    + +FP+      +  
Sbjct: 184 QISTHPNVLHIHTSYLDNIENVSETFLAEIAEIKRKSEKQAHQAAIAEFPE------VHS 237

Query: 300 NYIEEAMSREAIDDLYAPLIMG--CDIA 325
              + A  R      YA +++G   DIA
Sbjct: 238 EEYKRAYHRAFQRTKYAYVVIGRWADIA 265


>gi|315576663|gb|EFU88854.1| conserved hypothetical protein [Enterococcus faecalis TX0630]
          Length = 519

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/262 (12%), Positives = 61/262 (23%), Gaps = 21/262 (8%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS--KWLSMLP 136
              +      GK+ L++ + +WL               +      +       + +    
Sbjct: 82  NIIVVTPSQYGKSWLSSRIAVWLADHN--RRCYVAGGKKDTTDIIMQHVTDTLQTVDESI 139

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
            R   E            ++      G  S         +   +                
Sbjct: 140 ARKLLEPVDKLERLQTGLSKRKISFSGGGSIEGISLGEHFKGNKSGNQAIGRGGD---YI 196

Query: 197 NDEASGTPDIINKSI--LGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254
            DE++   +     +    F      N      SN     G FYD         K   + 
Sbjct: 197 IDESAFVSNETYAELGRRNFANVDGKNYLSFEISNP-HNKGRFYDKLTQ-ENIPKGMLVV 254

Query: 255 TRTVEGIDSGFHEGIISR-----YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309
              V           I +     +  +    +   L + P +  +        E     E
Sbjct: 255 WADVRTAFEEDRVKSIEQVISSEFFQNKSTCQRYFLCELPDENEDGMFGTPQTE-----E 309

Query: 310 AIDDLYAPLIMGCDIAGEGGDK 331
              +      +G D A +G DK
Sbjct: 310 EHTEKNWEYFLGVDSAYKGKDK 331


>gi|255975409|ref|ZP_05425995.1| predicted protein [Enterococcus faecalis T2]
 gi|255968281|gb|EET98903.1| predicted protein [Enterococcus faecalis T2]
          Length = 519

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/262 (12%), Positives = 61/262 (23%), Gaps = 21/262 (8%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS--KWLSMLP 136
              +      GK+ L++ + +WL               +      +       + +    
Sbjct: 82  NIIVVTPSQYGKSWLSSRIAVWLADHN--RRCYVAGGKKDTTDIIMQHVTDTLQTVDESI 139

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
            R   E            ++      G  S         +   +                
Sbjct: 140 ARKLLEPVDKLERLQTGLSKRKISFSGGGSIEGISLGEHFKGNKSGNQAIGRGGD---YI 196

Query: 197 NDEASGTPDIINKSI--LGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254
            DE++   +     +    F      N      SN     G FYD         K   + 
Sbjct: 197 IDESAFVSNETYAELGRRNFANVDGKNYLSFEISNP-HNKGRFYDKLTQ-ENIPKGMLVV 254

Query: 255 TRTVEGIDSGFHEGIISR-----YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309
              V           I +     +  +    +   L + P +  +        E     E
Sbjct: 255 WADVRTAFEEDRVKSIEQVISSEFFQNKSTCQRYFLCELPDENEDGMFGTPQTE-----E 309

Query: 310 AIDDLYAPLIMGCDIAGEGGDK 331
              +      +G D A +G DK
Sbjct: 310 EHTEKNWEYFLGVDSAYKGKDK 331


>gi|29376621|ref|NP_815775.1| hypothetical protein EF2112 [Enterococcus faecalis V583]
 gi|257090386|ref|ZP_05584747.1| predicted protein [Enterococcus faecalis CH188]
 gi|307276045|ref|ZP_07557178.1| hypothetical protein HMPREF9521_01673 [Enterococcus faecalis
           TX2134]
 gi|29344085|gb|AAO81845.1| hypothetical protein EF_2112 [Enterococcus faecalis V583]
 gi|256999198|gb|EEU85718.1| predicted protein [Enterococcus faecalis CH188]
 gi|306507375|gb|EFM76512.1| hypothetical protein HMPREF9521_01673 [Enterococcus faecalis
           TX2134]
          Length = 519

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/262 (12%), Positives = 61/262 (23%), Gaps = 21/262 (8%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS--KWLSMLP 136
              +      GK+ L++ + +WL               +      +       + +    
Sbjct: 82  NIIVVTPSQYGKSWLSSRIAVWLADHN--RRCYVAGGKKDTTDIIMQHVTDTLQTVDESI 139

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
            R   E            ++      G  S         +   +                
Sbjct: 140 ARKLLEPVDKLERLQTGLSKRKISFSGGGSIEGISLGEHFKGNKSGNQAIGRGGD---YI 196

Query: 197 NDEASGTPDIINKSI--LGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254
            DE++   +     +    F      N      SN     G FYD         K   + 
Sbjct: 197 IDESAFVSNETYAELGRRNFANVDGKNYLSFEISNP-HNKGRFYDKLTQ-ENIPKGMLVV 254

Query: 255 TRTVEGIDSGFHEGIISR-----YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309
              V           I +     +  +    +   L + P +  +        E     E
Sbjct: 255 WADVRTAFEEDRVKSIEQVISSEFFQNKSTCQRYFLCELPDENEDGMFGTPQTE-----E 309

Query: 310 AIDDLYAPLIMGCDIAGEGGDK 331
              +      +G D A +G DK
Sbjct: 310 EHTEKNWEYFLGVDSAYKGKDK 331


>gi|262040826|ref|ZP_06014054.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041848|gb|EEW42891.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 434

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 82/277 (29%), Gaps = 33/277 (11%)

Query: 61  AVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
           A+    +          +K  A  AG G GKT +    +   +   P ++    A +  Q
Sbjct: 2   AIAPTLNIPQAKFLAMQYKFKAYVAGFGSGKTWVGCGGICKGMWEHPKINQGYFAPTYPQ 61

Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
           +++  +  V +                    +    E  ++      + Y  T    S E
Sbjct: 62  IRDIFYPTVEEVAHDWG-------------LNVKINEGNKEVHFYAGRQYRGTTICRSME 108

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFT-ELNPNRFWIMTSNTRRLN 234
           +P                DE    P     +  + I+     ++   R  I  + T    
Sbjct: 109 KP---QTIVGFKIGNALIDELDVMPAKKAQLAWRKIIARMRYKVPGLRNGIDVTTTPEGF 165

Query: 235 GWFYDIFNIPLED-------WKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILG 286
            + Y  F   + D       +   Q  T   E  + + +   ++  Y    ++ +  + G
Sbjct: 166 KFVYQQFAKAVRDKPSLSTLYGLVQASTFDNEKNLPADYIPSLMESY--PPELIKAYLRG 223

Query: 287 QFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
           QF            +  +  +    +    PL +G D
Sbjct: 224 QFTNLTSGTIYHQ-FDRQLNNCHEEEQPGEPLYIGMD 259


>gi|297520464|ref|ZP_06938850.1| hypothetical protein EcolOP_22727 [Escherichia coli OP50]
          Length = 313

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 39/122 (31%), Gaps = 5/122 (4%)

Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290
             +   F    +        +    R     D  ++     +   +  V   E+   +  
Sbjct: 5   NGMANPFAQKRHGGK--IPVFTFHWRDDPRKDEEWYRRECEKI-DNPVVVAQELDLNYSA 61

Query: 291 QEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348
                 IP  +++ A+              +   D+A EG DK     R G ++E++ +W
Sbjct: 62  SAEGVLIPSEWVQAAVDAHIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREW 121

Query: 349 SA 350
           S 
Sbjct: 122 SG 123


>gi|228904911|ref|ZP_04068965.1| hypothetical protein bthur0014_60350 [Bacillus thuringiensis IBL
           4222]
 gi|228854925|gb|EEM99529.1| hypothetical protein bthur0014_60350 [Bacillus thuringiensis IBL
           4222]
          Length = 954

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/267 (11%), Positives = 62/267 (23%), Gaps = 49/267 (18%)

Query: 91  TTLNAWMMLWLISTRPGMS-------IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           T      MLW+  T  G +        +     + Q +  ++ ++  ++   P       
Sbjct: 440 TWTMCAHMLWVAFTCNGGTRMAKGAACVVATPYDNQAR-LIFDQLKTFIDNNPVLQESIK 498

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
                             +   +        T                   ++ DE    
Sbjct: 499 SITK----------NPYVIEFKNGSVIRL-FTAGTRSGSEGGSLRGQRADWLYMDEVDYM 547

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL------------------ 245
            D   +SI     E       ++ S      G FY                         
Sbjct: 548 GDKDFESIFAIVNEAPDRIGCMIASTPTGRRGMFYKTCTQMKLNQDVKMNKNNVYDMRSY 607

Query: 246 -----EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
                E W  +   T             +   +         E+L +F  + V      +
Sbjct: 608 NRTLSEGWAEFYFPTMVNPEWGPKMERELRKLFSE--AAYEHEVLAEFGTEMVG-VFNKD 664

Query: 301 YIEEA----MSREAIDDLYAPLIMGCD 323
           Y++EA     +         P+ +G D
Sbjct: 665 YVDEASSIGYNYTTSPTHDGPIAIGID 691


>gi|307280628|ref|ZP_07561676.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
           TX0860]
 gi|306503994|gb|EFM73211.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
           TX0860]
          Length = 425

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/267 (12%), Positives = 81/267 (30%), Gaps = 11/267 (4%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
           N  I       GRG GK++  A  ++  +  R  ++ + I   +  L+ +++ ++   + 
Sbjct: 25  NSDILNIICKGGRGSGKSSDIA-HIITQLLMRYAVNAVGIRYVDNTLEQSIYEQMKWAIE 83

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
                H F+     L  +           G  +     + +         ++        
Sbjct: 84  QQGVTHLFKFNKSPLRITYIPRGNYMIFRGAQNPERIKSLKDSRFPFAIGWIEELGEFKT 143

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN--IPLEDWKRY 251
               DE +   + +   + G        +F+   +  +R   W    +      ++   +
Sbjct: 144 ---EDEVTTITNSL---LRGELGNGLFYKFFFSYNPPKRRQSWVNKKYESSFQPDNTFVH 197

Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311
               +    I   F + + +    +   AR E  G+           +  +E+    + +
Sbjct: 198 HSTYKDNPFISREFLKEVEAARDRNLLRARWEYDGE-AIGSGVVPFSNLKVEKGCITDEM 256

Query: 312 DDLYAPLIMGCDIAGEGGDKTVVVFRR 338
              +  +  G D  G   D    V   
Sbjct: 257 VANFDNIRNGLDF-GYATDPLAFVRWH 282


>gi|209918626|ref|YP_002292710.1| hypothetical protein ECSE_1435 [Escherichia coli SE11]
 gi|209911885|dbj|BAG76959.1| conserved hypothetical protein [Escherichia coli SE11]
          Length = 436

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 84/280 (30%), Gaps = 33/280 (11%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
            M+ +    +           K  A  AG G GKT +    +   I   PG++    A +
Sbjct: 1   MMKMISPTLNVPQARFLSMPHKFKAYIAGFGSGKTWVGCGGICKGIWEHPGINQGYFAPT 60

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
             Q+++  +  V +  +                 +    E  ++      + Y  T    
Sbjct: 61  YPQIRDIFYPTVEEVAADWG-------------LNVKINEGNKEVHFYYGRQYRGTTICR 107

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL-----NPNRFWIMTSNTR 231
           S E+P                DE    P    ++             +  R  I  + T 
Sbjct: 108 SMEKP---QTIVGFKIGNALVDELDILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTP 164

Query: 232 RLNGWFYDIFNIPLED-------WKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIE 283
               + Y+ F   + +       +   Q  T   E  + + +   ++  Y    ++ +  
Sbjct: 165 EGFKFVYEQFVKAVREKTELASLYGLVQASTFDNEKNLPADYIPSLLESY--PPELIKAY 222

Query: 284 ILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
           + GQF            +  +  + E ++    P+ +G D
Sbjct: 223 LRGQFTNLTSGTVYHQ-FDRKLNNCEEVEQPGEPIYIGMD 261


>gi|117623621|ref|YP_852534.1| putative phage terminase [Escherichia coli APEC O1]
 gi|331672908|ref|ZP_08373694.1| putative phage terminase [Escherichia coli TA280]
 gi|115512745|gb|ABJ00820.1| putative phage terminase [Escherichia coli APEC O1]
 gi|309701027|emb|CBJ00325.1| phage protein [Escherichia coli ETEC H10407]
 gi|331070129|gb|EGI41498.1| putative phage terminase [Escherichia coli TA280]
          Length = 436

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 84/280 (30%), Gaps = 33/280 (11%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
            M+ +    +           K  A  AG G GKT +    +   I   PG++    A +
Sbjct: 1   MMKMISPTLNVPQARFLSMPHKFKAYIAGFGSGKTWVGCGGICKGIWEHPGINQGYFAPT 60

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
             Q+++  +  V +  +                 +    E  ++      + Y  T    
Sbjct: 61  YPQIRDIFYPTVEEVAADWG-------------LNVKINEGNKEVHFYYGRQYRGTTICR 107

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL-----NPNRFWIMTSNTR 231
           S E+P                DE    P    ++             +  R  I  + T 
Sbjct: 108 SMEKP---QTIVGFKIGNALVDELDILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTP 164

Query: 232 RLNGWFYDIFNIPLED-------WKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIE 283
               + Y+ F   + +       +   Q  T   E  + + +   ++  Y    ++ +  
Sbjct: 165 EGFKFVYEQFVKAVREKTELASLYGLVQASTFDNEKNLPADYIPSLLESY--PPELIKAY 222

Query: 284 ILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
           + GQF            +  +  + E ++    P+ +G D
Sbjct: 223 LRGQFTNLTSGTVYHQ-FDRKLNNCEEVEQPGEPIYIGMD 261


>gi|116623201|ref|YP_825357.1| hypothetical protein Acid_4108 [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116226363|gb|ABJ85072.1| conserved hypothetical protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 436

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 71/265 (26%), Gaps = 27/265 (10%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GK+       + L     G   +  A +   L++   A + + L              
Sbjct: 40  GSGKSQALCQEAIRLSYMNQGRLGLLGAPTYPMLRDATQAALLEILQK------------ 87

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
               +    E  +    +    +  T         D F     T+      DE + T   
Sbjct: 88  ----NEIPYEHNKAENLL---VFKDTGSRILFRPVDEFERLRGTNLAWFGLDELTYTQQE 140

Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRYQIDTRTVEGIDSGF 265
               + G   +    +       T +   W Y  F   P+  +   Q        + +  
Sbjct: 141 AWLRLEGRLRDPKATQLCGFAVWTPKGFDWVYRKFITDPVPGYGAIQARPFENRHLLAKV 200

Query: 266 HEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI 324
            +         D    + E+LG +   +        +      +    + Y PL+   D 
Sbjct: 201 GDFYDRLKDSYDERFYQQEVLGNYLSMQGGRVY-GAFDRTTHIQSVRPNPYLPLLWALD- 258

Query: 325 AGEGGD--KTVVVFRRGNIIEHIFD 347
                D   +V+V      +  + +
Sbjct: 259 --FNVDPMSSVIVQVVKGEVRVLDE 281


>gi|331677171|ref|ZP_08377867.1| putative phage terminase [Escherichia coli H591]
 gi|331075860|gb|EGI47158.1| putative phage terminase [Escherichia coli H591]
          Length = 436

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 85/280 (30%), Gaps = 33/280 (11%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
            M+ +    +           K  A  AG G GKT +    +   I   PG++    A +
Sbjct: 1   MMKMISPTLNVPQARFLSMPHKFKAYIAGFGSGKTWVGCGGICKGIWEHPGINQGYFAPT 60

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
             Q+++  +  V +  +                 +    E  ++      + Y  T    
Sbjct: 61  YPQIRDIFYPTVEEVAADWG-------------LNVKINEGNKEVHFYYGRQYRGTTICR 107

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL-----NPNRFWIMTSNTR 231
           S E+P                DE    P    ++             +  R  I  + T 
Sbjct: 108 SMEKP---QTIVGFKIGNALVDELDILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTP 164

Query: 232 RLNGWFYDIFNIPLED-------WKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIE 283
               + Y+ F   + +       +   Q  T   E  + + +   ++  Y    ++ +  
Sbjct: 165 EGFKFVYEQFVKAVREKTELASLYGLVQASTFDNEKNLPADYIPSLLESY--PPELIKAY 222

Query: 284 ILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
           +LG+F            +  +  + E ++    P+ +G D
Sbjct: 223 LLGRFTNLTSGTVYHQ-FDRKLNNCEEVEQPGEPIYIGMD 261


>gi|309812665|ref|ZP_07706409.1| putative phage terminase, large subunit [Dermacoccus sp. Ellin185]
 gi|308433360|gb|EFP57248.1| putative phage terminase, large subunit [Dermacoccus sp. Ellin185]
          Length = 488

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/320 (13%), Positives = 86/320 (26%), Gaps = 55/320 (17%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             WQ E ++                I    +S  R  GKT L A + +  +   P  + +
Sbjct: 54  RPWQREIVD----------GAFAAGIRTALVSLPRANGKTALAAALAVAELFAGPPSAEV 103

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +  S+ +  N       + + + P                   EL E++     +    
Sbjct: 104 LVVASDQRQANIALRMAKRMIELSP-------------------ELAERAQIYADRIAVP 144

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
                    P      H      +  DE     + + +++    +   P    +  S   
Sbjct: 145 ENDATMIALPADPGALHGWDPSLLVVDELHVVSEAVWEAVT-SMSGKRPESLTLAISTPS 203

Query: 232 RLNG-----------------WFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG---IIS 271
                                +F   F  P       +            F        +
Sbjct: 204 TSPDCVMWSLVEHGRAGTDPAFFLREFAAPDGCATDDEAAWAAANPALGDFLSADGLAAA 263

Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDK 331
           R  L   V R   LGQ+     + ++P    +   + +   +  + +++  D +  G D 
Sbjct: 264 RRTLREPVFRQLRLGQWVTGS-DAWLPWGAWDALAAPDVAVERGSRVVLAFDGSASG-DS 321

Query: 332 TVVV---FRRGNIIEHIFDW 348
           T +V         +  +  W
Sbjct: 322 TALVGCTVSEQPHVFVVGLW 341


>gi|70727357|ref|YP_254273.1| putative phage terminase large subunit [Staphylococcus haemolyticus
           JCSC1435]
 gi|68448083|dbj|BAE05667.1| putative phage terminase large subunit [Staphylococcus haemolyticus
           JCSC1435]
          Length = 421

 Score = 67.7 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 78/275 (28%), Gaps = 25/275 (9%)

Query: 72  NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131
             NP I       GRG GK++  + ++   +  R  M+ + +  ++  L  +++ ++   
Sbjct: 22  TKNPDILNVVAKGGRGSGKSSDISIIIT-QLIMRYPMNAVVVRKTDNTLATSVFEQIKWA 80

Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
           +      H F+++   +             +    +   I  R          +      
Sbjct: 81  IEEQKVSHLFKIKVSPM------------EITFIPRGNRIIFRGAQNPERLKSLKDSRFP 128

Query: 192 GMAVFNDEAS--GTPDIINKSILGFFTELNPNRFWIMT---SNTRRLNGWFYDI---FNI 243
              ++ +E     T D +                +       N  +    + +     + 
Sbjct: 129 FSIMWIEELGEFKTEDEVTTITNSMLRGELDEGLFYKFYFSYNPAKRKQHWANKKYETSF 188

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
             ++   +         I   F +   S    +    R E LG+         +P N + 
Sbjct: 189 QPDNTFVHHSTYLNNPFISKQFIQEAESAKQRNELRYRWEYLGEAIGSG---VVPFNNLR 245

Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
                + + + +  +    D  G   D    V   
Sbjct: 246 IEKIPDDLYNSFDNIRNAVDF-GYATDPLAFVRWH 279


>gi|146277121|ref|YP_001167280.1| hypothetical protein Rsph17025_1074 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555362|gb|ABP69975.1| protein of unknown function DUF264 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 414

 Score = 67.7 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/267 (12%), Positives = 64/267 (23%), Gaps = 35/267 (13%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134
            +  GRG GKT   A  +   +             +  +  +  Q +  +    S  L+ 
Sbjct: 21  VVMGGRGAGKTRAGAEWVRSEVEGPRPGDPGRSRHVALVGETVDQTREVMVFGESGLLAC 80

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
            P     E ++                                                A
Sbjct: 81  SPPDRRPEWEAGRKRL------------------VWPNGAVAQVFSAHDPESLRGPQFDA 122

Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
            + DE +     +     +       +  R  +    T R       I + P      + 
Sbjct: 123 AWADELAKWARAEEAWDMLQFSLRLGDQPRQVVT--TTPRNVPVLRQILDNPST-VVTHA 179

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
                   +   F + + +RY     + R E+ G   +           IE    R    
Sbjct: 180 PTEANRAYLAKSFLDEVHARYDGT-RLGRQELEGLLLEDVEGALWTTVRIEAL--RAEEA 236

Query: 313 DLYAPLIMGCDIAGEG---GDKTVVVF 336
                +++  D    G    D+  +V 
Sbjct: 237 GPLDRIVVAVDPPVTGHEASDECGIVV 263


>gi|284007216|emb|CBA72504.1| phage terminase large subunit [Arsenophonus nasoniae]
          Length = 441

 Score = 67.7 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/267 (16%), Positives = 72/267 (26%), Gaps = 30/267 (11%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
             GR  GKT L   +   + +       + I N    L      EV + +        F+
Sbjct: 30  KCGRRFGKTALIQILTASVTTQFFYRHGMKIPN--AGLVGIFTPEVKQQIE------IFD 81

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
                L+P        +  + +++            +               +  DEA+ 
Sbjct: 82  TVEEYLYPLITRKARNQGLIRLENGAKIDFWALNDNKLAG-----RGREYNRILIDEAAF 136

Query: 203 TPDIIN------KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256
           T +         K+I               T N      +FY I N P   +      T 
Sbjct: 137 TKNKEMLEEVWPKAIKPTLLTTKGGADVFSTPNGIDDENFFYAICNDPSLGFNVLHAPTA 196

Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN--YIEEAMSREAIDDL 314
               I     +        D  V + E   +F        +  N   +E           
Sbjct: 197 KNPFIPQSELDKEKED--NDPRVYQQEFEAEFIDWSDAALLDVNKMLVE---GEPVEPPT 251

Query: 315 YAPLIMGC-DIAGEGG---DKTVVVFR 337
              L+    D A +GG   D T VVF 
Sbjct: 252 TCDLVFAVMDTALKGGTENDGTGVVFF 278


>gi|75758280|ref|ZP_00738405.1| Hypothetical protein RBTH_06375 [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74494334|gb|EAO57425.1| Hypothetical protein RBTH_06375 [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 660

 Score = 67.7 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/267 (11%), Positives = 62/267 (23%), Gaps = 49/267 (18%)

Query: 91  TTLNAWMMLWLISTRPGMS-------IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           T      MLW+  T  G +        +     + Q +  ++ ++  ++   P       
Sbjct: 146 TWTMCAHMLWVAFTCNGGTRMAKGAACVVATPYDNQAR-LIFDQLKTFIDNNPVLQESIK 204

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
                             +   +        T                   ++ DE    
Sbjct: 205 SITK----------NPYVIEFKNGSVIRL-FTAGTRSGSEGGSLRGQRADWLYMDEVDYM 253

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL------------------ 245
            D   +SI     E       ++ S      G FY                         
Sbjct: 254 GDKDFESIFAIVNEAPDRIGCMIASTPTGRRGMFYKTCTQMKLNQDVKMNKNNVYDMRSY 313

Query: 246 -----EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
                E W  +   T             +   +         E+L +F  + V      +
Sbjct: 314 NRTLSEGWAEFYFPTMVNPEWGPKMERELRKLFSE--AAYEHEVLAEFGTEMVG-VFNKD 370

Query: 301 YIEEA----MSREAIDDLYAPLIMGCD 323
           Y++EA     +         P+ +G D
Sbjct: 371 YVDEASSIGYNYTTSPTHDGPIAIGID 397


>gi|90423308|ref|YP_531678.1| hypothetical protein RPC_1800 [Rhodopseudomonas palustris BisB18]
 gi|90105322|gb|ABD87359.1| protein of unknown function DUF264 [Rhodopseudomonas palustris
           BisB18]
          Length = 423

 Score = 67.7 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/294 (12%), Positives = 73/294 (24%), Gaps = 41/294 (13%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCA------ISAGRGIGKTTLNAWMMLWLISTRPG---- 107
           F+ A       +     P     A      +  GRG GKT   A  +             
Sbjct: 8   FLNAQWDVFAHDHQRPPPLAPNGAPWLSWLLIGGRGAGKTRAGAEWIRAQALGLAPFAER 67

Query: 108 --MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
               I  +  +E  ++  +   VS  L++ P                             
Sbjct: 68  AVSRIALVGETEHDVREVMIEGVSGLLAVHPRHERPSWMPSRKRLE-------------- 113

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRF 223
                           D             ++DE +     +     +          R 
Sbjct: 114 ----WSNGAVAQAFSADDPESLRGPQFACAWSDEMAKWRYAEAAFDMLQFGLRLGPQPRQ 169

Query: 224 WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283
             + + T R       +   P                +   F +G+++RY     + R E
Sbjct: 170 --LITTTPRPTALLKRLLGDPA-CVTTRAPTRANAFNLAPTFLQGVMARYQGT-RLGRQE 225

Query: 284 ILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVV 334
           + G+  +   +       +E     +A       +++  D    +G+  D   +
Sbjct: 226 LDGEIIEDRADALWSRALLESCRVDDAP--ALTRIVVAIDPPASSGKRADACGI 277


>gi|293414703|ref|ZP_06657352.1| hypothetical protein ECDG_01266 [Escherichia coli B185]
 gi|291434761|gb|EFF07734.1| hypothetical protein ECDG_01266 [Escherichia coli B185]
          Length = 442

 Score = 67.7 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 68/229 (29%), Gaps = 27/229 (11%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL---KNTLWAEVSKWLSMLPH 137
           A+  GR  GKT +   +     + R          +  QL   +  ++    +    +  
Sbjct: 28  AVCCGRRWGKTVMLVNIATSYATRR------FAVPTTGQLIAGRVGIFTAQYRQYQEIWD 81

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
                +Q L            E+ + + +        T      +  +        AV  
Sbjct: 82  EICAALQPL-----ILSQSKNEKRIILRNGGRIDFWVTD-----NNKLAGRGRKYHAVLI 131

Query: 198 DEASG------TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY 251
           DEA+         +I  ++I     +     +   T N    + +FY I +     +  +
Sbjct: 132 DEAAFTKSPEMLEEIWPRAIRPTLVDYRGCAWVFSTPNGIDESNFFYAICHDESLGFVMH 191

Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
              T +   I     E    +   D  V + E L +F     +  +  +
Sbjct: 192 HAPTSSNPYIPKEELEETEKKS--DPRVWQQEYLAEFVDWSKDALLDVD 238


>gi|229162517|ref|ZP_04290478.1| DNA packaging protein Gp17 [Bacillus cereus R309803]
 gi|228620996|gb|EEK77861.1| DNA packaging protein Gp17 [Bacillus cereus R309803]
          Length = 525

 Score = 67.7 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 59/227 (25%), Gaps = 19/227 (8%)

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126
                      F   I+  R IG +T++  + LW+   RP  + + ++  +     +L+ 
Sbjct: 43  QQKQFIEEMERFNV-IAKARQIGFSTMSLALCLWMSMNRPRTNYMIVSYKQES-STSLFD 100

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
           ++      LPH                  +     M  D+                    
Sbjct: 101 KLKMMYDDLPHDK---------FKFPKDVQNNRGQMKFDNGSSITLAT------AGGKDV 145

Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246
              T    +   E +   +  +  +             ++   T      +  +F    +
Sbjct: 146 GRGTTYEYILLSEFAFYENQESILLSAEQALAKSKTSKLVIETTSNGFNPYQKLFMNAYK 205

Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293
                +          S + +     Y       +++  G+   ++ 
Sbjct: 206 G--NSKYKAFFFPFYSSSYAKQFKDDYDEAEAWYKLDNKGKRLTKDD 250


>gi|304321166|ref|YP_003854809.1| Phage DNA Packaging Protein [Parvularcula bermudensis HTCC2503]
 gi|303300068|gb|ADM09667.1| Phage DNA Packaging Protein [Parvularcula bermudensis HTCC2503]
          Length = 425

 Score = 67.3 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 72/286 (25%), Gaps = 30/286 (10%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
              +     +   +  N         +  GRG GKT   A  +   I+      I  +  
Sbjct: 20  KRALHEWKFYARQDQWNPPGDWTTWLVLGGRGAGKTRTGAEWIAAQIAAGR-RRIALVGE 78

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
           +    +  +    S   ++         +S                              
Sbjct: 79  TYEDAREVMIDGPSGLCAIGTADSRPHYESSRHRL------------------LWPCGAE 120

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRL 233
                 D   G       A ++DE +    P+    ++       +  R  +    T R 
Sbjct: 121 AHIFSADDPDGLRGHQFEAAWSDELAKWRQPEAAWANLQLGLRLGDRPRQIVT--TTPRP 178

Query: 234 NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293
                 + N        +   T     +   F   +   Y     + R E+ G+      
Sbjct: 179 FPLLRLLMNDDRT-VVTHAATTANRAALAETFLTEVTRTYQGT-RLGRQELEGEVLDDRE 236

Query: 294 NNFIPHNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVVVF 336
                 + IE   SR A       +++  D    AG   D+  ++ 
Sbjct: 237 GALWSWSMIEA--SRLAGAPRCDRVVVAVDPPVTAGPDADECGIIV 280


>gi|262194129|ref|YP_003265338.1| hypothetical protein Hoch_0830 [Haliangium ochraceum DSM 14365]
 gi|262077476|gb|ACY13445.1| protein of unknown function DUF264 [Haliangium ochraceum DSM 14365]
          Length = 503

 Score = 67.3 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/367 (10%), Positives = 92/367 (25%), Gaps = 86/367 (23%)

Query: 9   QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQP---HRWQLEFMEAVDVH 65
           +K EQEL +    A               WG      +   +P    R+Q+ F+      
Sbjct: 32  KKNEQELSD--WLAN-------------EWGFLAGLAKFDDEPVTLERYQMAFLRN---- 72

Query: 66  CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW 125
                     + F+  ++  R +G + + A   L     R   + + ++ +    K  + 
Sbjct: 73  ---------RSRFR-WVTKSRQVGFSFVFALEALARCHLRDKHTAVFVSYNLEDAKEKVL 122

Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185
               +    LP  +   +               +  +  +S                   
Sbjct: 123 -IARQIHEELPLAYQKRL-----------VVDSKTELAFESNSSNKRLSRIISAPSKAPR 170

Query: 186 GPHNTHGMAVFNDEASG--TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243
           G        V+ DE +       +           +        S      G F++I   
Sbjct: 171 GKKGD----VYLDELAHYVLDREVYTGSTALILRSHGQLSSC--STPLGRRGIFWEISTE 224

Query: 244 PLEDWKRYQID---TRTVEGIDSGFHEGIISRYGLDSDV--------------------- 279
            L  +  +  D                 +     + ++                      
Sbjct: 225 ELRKYPHHTRDEVPWWRCRFFCLDIDRAMREAPHMPTEERVAAFGTQAIVQQLDSLPLED 284

Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREA--------IDDLYAPLIMGCDIAGEGGDK 331
            + E    F  +   ++ P+  I    S +         + +    ++ G D+     D+
Sbjct: 285 FQQEFECSFVDESY-SYYPYELILPCTSEDLVPAGDFTDLPEPEGRIVAGFDVGRT-RDR 342

Query: 332 TVVVFRR 338
           + +    
Sbjct: 343 SELAVFE 349


>gi|315144732|gb|EFT88748.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
           TX2141]
          Length = 425

 Score = 67.3 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/267 (12%), Positives = 81/267 (30%), Gaps = 11/267 (4%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
           N  I       GRG GK++  A  ++  +  R  ++ + I   +  L+ +++ ++   + 
Sbjct: 25  NSDILNIVCKGGRGSGKSSDIA-HIITQLLMRYAVNAVGIRYVDNTLEQSIYEQMKWAIE 83

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
                H F+     L  +           G  +     + +         ++        
Sbjct: 84  QQGVTHLFKFNKSPLRITYIPRGNYMIFRGAQNPERIKSLKDSRFPFAIGWIEELGEFKT 143

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN--IPLEDWKRY 251
               DE +   + +   + G        +F+   +  +R   W    +      E+   +
Sbjct: 144 ---EDEVTTITNSL---LRGELGNGLFYKFFFSYNPPKRRQSWVNKKYESSFQPENTFVH 197

Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311
               +    I   F + + +    +   AR E  G+           +  +E+    + +
Sbjct: 198 HSTYKDNPFISREFLKEVEAARDRNLLRARWEYDGE-AIGSGVVPFSNLKVEKGCITDEM 256

Query: 312 DDLYAPLIMGCDIAGEGGDKTVVVFRR 338
              +  +  G D  G   D    V   
Sbjct: 257 VANFDNIRNGLDF-GYATDPLAFVRWH 282


>gi|167856075|ref|ZP_02478817.1| phage terminase, large subunit, PBSX family: protein [Haemophilus
           parasuis 29755]
 gi|167852772|gb|EDS24044.1| phage terminase, large subunit, PBSX family: protein [Haemophilus
           parasuis 29755]
          Length = 321

 Score = 67.3 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 48/192 (25%), Gaps = 18/192 (9%)

Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222
                        ++  R +          +  + DEA    ++  + +L    E     
Sbjct: 10  KYVRTKCGRISYIFTGLRHNLDSIKSKARILLAWIDEAESVSEMAWRKLLPTVRESGSE- 68

Query: 223 FWIMTSNTRRLNGWFYDIFNIPLEDWKRY-QIDTRTVEGIDSGFHEGIISRYGL-DSDVA 280
            W+   N  +        F    ++     +++            +  +      D    
Sbjct: 69  IWLTW-NPEKKGSATDLRFRQYQDESMAIVEMNYSDNPWFPDVLEQERLRDKARLDDATY 127

Query: 281 RIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGN 340
           R    G + ++         Y E  +  + + D   P   G D  G   D T        
Sbjct: 128 RWIWEGDYLEESEAQVFRGKYQE--LEFKPLPDFEGPYH-GLDF-GFAQDPTAA------ 177

Query: 341 IIEHIFDWSAKL 352
               +  W  K 
Sbjct: 178 ----VKCWVFKD 185


>gi|194473846|ref|YP_002048670.1| DNA maturase B [Morganella phage MmP1]
 gi|194307067|gb|ACF42049.1| DNA maturase B [Morganella phage MmP1]
          Length = 586

 Score = 67.3 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 72/275 (26%), Gaps = 37/275 (13%)

Query: 24  CVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS 83
               F  F+  F  W     P      P R Q++    V           NP   K  + 
Sbjct: 15  LKADFIAFL--FVLWKALNLP-----PPTRCQIDMARTVA----------NPKNKKFILQ 57

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           A RGIGK+ +    ++WL+   P + ++ ++ S+ +        +   + +LP     + 
Sbjct: 58  AFRGIGKSFILCAYVVWLLWNNPQLKVLIVSASKERADANSIF-IKNIIELLPFLSEMKP 116

Query: 144 QSLSLHPSGWYAELL-EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
           +         +   L         K   IT +                      N    G
Sbjct: 117 RQGQRDSVISFDVGLATPDHSPSVKSVGITGQLTG----SRADIILADDVEIPSNSATQG 172

Query: 203 TPDIINKSIL--GFFTELNPNRFWIMTSNT------------RRLNGWFYDIFNIPLEDW 248
           T + +   +       +       I                  R           P    
Sbjct: 173 TREKLWTQVQEFAALLKPLDTSRVIYLGTPQTEMTLYKELEDNRGYSTIIWPAYYPRNKE 232

Query: 249 KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283
           +      R    + + + E      G  +D  R +
Sbjct: 233 EAMHYGDRLAPMLKAEYDETPELLAGTPTDPVRFD 267


>gi|331662794|ref|ZP_08363717.1| putative phage terminase [Escherichia coli TA143]
 gi|331061216|gb|EGI33180.1| putative phage terminase [Escherichia coli TA143]
          Length = 407

 Score = 67.3 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 87/295 (29%), Gaps = 34/295 (11%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
            M+ +    +           K  A  AG G GKT +    +       PG++    A +
Sbjct: 1   MMKMISPTLNVPQARFLSMPHKFKAYIAGFGSGKTWVGCGGICKGTWEHPGINQGYFAPT 60

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
             Q+++  +  V +  +                 +    E  ++      + Y  T    
Sbjct: 61  YPQIRDIFYPTVEEVAADWG-------------LNVKINEGNKEVHFYYGRQYRGTTICR 107

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL-----NPNRFWIMTSNTR 231
           S E+P                DE    P    ++             +  R  I  + T 
Sbjct: 108 SMEKP---QTIVGFKIGNALVDELDILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTP 164

Query: 232 RLNGWFYDIFNIPLED-------WKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIE 283
               + Y+ F   + +       +   Q  T   E  + + +   ++  Y    ++ +  
Sbjct: 165 EGFKFVYEQFVKAVREKTELASLYGLVQASTFDNEKNLPADYIPSLLESY--PPELIKAY 222

Query: 284 ILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
           + GQF            +  +  + E ++    P+ +G D    G    ++   R
Sbjct: 223 LRGQFTNLTSGTVYHQ-FDRKLNNCEEVEQPGEPIYIGMDF-NVGKMAGIIHVLR 275


>gi|282601251|ref|ZP_05981204.2| phage terminase, large subunit, PBSX family [Subdoligranulum
           variabile DSM 15176]
 gi|282569696|gb|EFB75231.1| phage terminase, large subunit, PBSX family [Subdoligranulum
           variabile DSM 15176]
          Length = 414

 Score = 67.3 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/253 (10%), Positives = 63/253 (24%), Gaps = 19/253 (7%)

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
            T+ +     GRG GK++  +  +++ +   P    + +      L+N++++++   +  
Sbjct: 23  GTVQEVVAKGGRGSGKSSYLSLELVYQLLRHPNCHAVVLRKVAGTLRNSVYSQIVWAIGA 82

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
           L    +F      +                      I      +      +         
Sbjct: 83  LGCSGYFRCTVSPM------------ECTYLPTGQKILFFGLDDAGKLKSLKVPFGAVGL 130

Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
            + +E      P+ +           +        +       W       P      + 
Sbjct: 131 CWFEELDQFDGPEEVRSVEQSILRGGDWTLTLKSFNPPAMARSWVNRYVLEPRPGKLVHH 190

Query: 253 IDTRTVEG--IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
              R +    +   F          + D  R E  G+        F      E     + 
Sbjct: 191 STYRDLPRQFLGERFWADAEHLRKTNPDAYRHEYGGEVVGSGAAVFDNLTLREVP---DE 247

Query: 311 IDDLYAPLIMGCD 323
               +  L  G D
Sbjct: 248 EIASFDRLYHGVD 260


>gi|323937704|gb|EGB33972.1| terminase [Escherichia coli E1520]
          Length = 433

 Score = 67.3 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 83/264 (31%), Gaps = 33/264 (12%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
           S P  FK A  AG G GKT +    +   I   PG++    A +  Q+++  +  V +  
Sbjct: 15  SMPHKFK-AYIAGFGSGKTWVGCGGICKGIWEHPGINQGYFAPTYPQIRDIFYPTVEEVA 73

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
           +                 +    E  ++      + Y  T    S E+P           
Sbjct: 74  ADWG-------------LNVKINEGNKEVHFYYGRQYRGTTICRSMEKP---QTIVGFKI 117

Query: 193 MAVFNDEASGTPDIINKSILGFFTEL-----NPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
                DE    P    ++             +  R  I  + T     + Y+ F   + +
Sbjct: 118 GNALVDELDILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTPEGFKFVYEQFVKAVRE 177

Query: 248 -------WKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299
                  +   Q  T   E  + + +   ++  Y    ++ +  + GQF           
Sbjct: 178 KTELASLYGLVQASTFDNEKNLPADYIPSLLESY--PPELIKAYLRGQFTNLTSGTVYHQ 235

Query: 300 NYIEEAMSREAIDDLYAPLIMGCD 323
            +  +  + E ++    P+ +G D
Sbjct: 236 -FDRKLNNCEEVEQPGEPIYIGMD 258


>gi|301025610|ref|ZP_07189133.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
           69-1]
 gi|300395930|gb|EFJ79468.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
           69-1]
          Length = 435

 Score = 67.3 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 83/264 (31%), Gaps = 33/264 (12%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
           S P  FK A  AG G GKT +    +   I   PG++    A +  Q+++  +  V +  
Sbjct: 17  SMPHKFK-AYIAGFGSGKTWVGCGGICKGIWEHPGINQGYFAPTYPQIRDIFYPTVEEVA 75

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
           +                 +    E  ++      + Y  T    S E+P           
Sbjct: 76  ADWG-------------LNVKINEGNKEVHFYYGRQYRGTTICRSMEKP---QTIVGFKI 119

Query: 193 MAVFNDEASGTPDIINKSILGFFTEL-----NPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
                DE    P    ++             +  R  I  + T     + Y+ F   + +
Sbjct: 120 GNALVDELDILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTPEGFKFVYEQFVKAVRE 179

Query: 248 -------WKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299
                  +   Q  T   E  + + +   ++  Y    ++ +  + GQF           
Sbjct: 180 KTELASLYGLVQASTFDNEKNLPADYIPSLLESY--PPELIKAYLRGQFTNLTSGTVYHQ 237

Query: 300 NYIEEAMSREAIDDLYAPLIMGCD 323
            +  +  + E ++    P+ +G D
Sbjct: 238 -FDRKLNNCEEVEQPGEPIYIGMD 260


>gi|284921252|emb|CBG34318.1| phage protein [Escherichia coli 042]
 gi|323942326|gb|EGB38497.1| terminase [Escherichia coli E482]
          Length = 433

 Score = 67.3 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 83/264 (31%), Gaps = 33/264 (12%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
           S P  FK A  AG G GKT +    +   I   PG++    A +  Q+++  +  V +  
Sbjct: 15  SMPHKFK-AYIAGFGSGKTWVGCGGICKGIWEHPGINQGYFAPTYPQIRDIFYPTVEEVA 73

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
           +                 +    E  ++      + Y  T    S E+P           
Sbjct: 74  ADWG-------------LNVKINEGNKEVHFYYGRQYRGTTICRSMEKP---QTIVGFKI 117

Query: 193 MAVFNDEASGTPDIINKSILGFFTEL-----NPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
                DE    P    ++             +  R  I  + T     + Y+ F   + +
Sbjct: 118 GNALVDELDILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTPEGFKFVYEQFVKAVRE 177

Query: 248 -------WKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299
                  +   Q  T   E  + + +   ++  Y    ++ +  + GQF           
Sbjct: 178 KTELASLYGLVQASTFDNEKNLPADYIPSLLESY--PPELIKAYLRGQFTNLTSGTVYHQ 235

Query: 300 NYIEEAMSREAIDDLYAPLIMGCD 323
            +  +  + E ++    P+ +G D
Sbjct: 236 -FDRKLNNCEEVEQPGEPIYIGMD 258


>gi|300825021|ref|ZP_07105118.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
           119-7]
 gi|300522485|gb|EFK43554.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
           119-7]
          Length = 435

 Score = 67.3 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 84/264 (31%), Gaps = 33/264 (12%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
           S P  FK A  AG G GKT +    +   I   PG++    A +  Q+++  +  V +  
Sbjct: 17  SMPHKFK-AYIAGFGSGKTWVGCGGICKGIWEHPGINQGYFAPTYPQIRDIFYPTVEEVA 75

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
           +                 +    E  ++      + Y  T    S E+P           
Sbjct: 76  ADWG-------------LNVKINEGNKEVHFYYGRQYRGTTICRSMEKP---QTIVGFKI 119

Query: 193 MAVFNDEASGTPDIINKSILGFFTEL-----NPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
                DE    P    ++             +  R  I  + T     + Y+ F   + +
Sbjct: 120 GNALVDELDILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTPEGFKFVYEQFVKAVRE 179

Query: 248 -------WKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299
                  +   Q  T   E  + + +   ++  Y    ++ +  +LG+F           
Sbjct: 180 KTELASLYGLVQASTFDNEKNLPADYIPSLLESY--PPELIKAYLLGRFTNLTSGTVYHQ 237

Query: 300 NYIEEAMSREAIDDLYAPLIMGCD 323
            +  +  + E ++    P+ +G D
Sbjct: 238 -FDRKLNNCEEVEQPGEPIYIGMD 260


>gi|193062487|ref|ZP_03043581.1| terminase [Escherichia coli E22]
 gi|192931609|gb|EDV84209.1| terminase [Escherichia coli E22]
          Length = 433

 Score = 67.3 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 84/264 (31%), Gaps = 33/264 (12%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
           S P  FK A  AG G GKT +    +   I   PG++    A +  Q+++  +  V +  
Sbjct: 15  SMPHKFK-AYIAGFGSGKTWVGCGGICKGIWEHPGINQGYFAPTYPQIRDIFYPTVEEVA 73

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
           +                 +    E  ++      + Y  T    S E+P           
Sbjct: 74  ADWG-------------LNVKINEGNKEVHFYYGRQYRGTTICRSMEKP---QTIVGFKI 117

Query: 193 MAVFNDEASGTPDIINKSILGFFTEL-----NPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
                DE    P    ++             +  R  I  + T     + Y+ F   + +
Sbjct: 118 GNALVDELDILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTPEGFKFVYEQFVKAVRE 177

Query: 248 -------WKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299
                  +   Q  T   E  + + +   ++  Y    ++ +  +LG+F           
Sbjct: 178 KTELASLYGLVQASTFDNEKNLPADYIPSLLESY--PPELIKAYLLGRFTNLTSGTVYHQ 235

Query: 300 NYIEEAMSREAIDDLYAPLIMGCD 323
            +  +  + E ++    P+ +G D
Sbjct: 236 -FDRKLNNCEEVEQPGEPIYIGMD 258


>gi|148256282|ref|YP_001240867.1| hypothetical protein BBta_4946 [Bradyrhizobium sp. BTAi1]
 gi|146408455|gb|ABQ36961.1| hypothetical protein BBta_4946 [Bradyrhizobium sp. BTAi1]
          Length = 482

 Score = 66.9 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 93/287 (32%), Gaps = 37/287 (12%)

Query: 68  SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST-------RPGMS--IICIANSET 118
            +       + +     GR  GK  + + +     +        RPG    ++C+A    
Sbjct: 70  GDRAPPPDRVREMWCVVGRRGGKDAVASLIAASAAALFDQENRLRPGERALVMCLACDRA 129

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
           Q +  L   +  + + LP              +G       +   + +            
Sbjct: 130 QARIIL-NYIRSYFTDLPL------------LAGMVTRETAEGFELSNGVDVAVATNSFR 176

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDII-NKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
                 +       +A + DE +  PD    ++I      L+ +   I  S+  R +G  
Sbjct: 177 AVRGRPILLAVLDEVAFWRDENTAKPDEELYRAITPAMATLSNSMI-IGISSPYRKSGLL 235

Query: 238 YDIFNI---PLEDWKRYQIDTRT-VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293
           Y  F        D    Q  TRT    I     +  ++    D   A  E +G+F + ++
Sbjct: 236 YKKFKSHFGKDGDVLVIQAPTRTLNPTIPQEIIDRALA---EDPAAASAEWMGEF-RDDI 291

Query: 294 NNFIPHNYIEEAMSREAIDDLYAPLIMG---CDIAGEGGDK--TVVV 335
             ++P   IE A+ +  +     P+ +    CD +G  GD     + 
Sbjct: 292 GGWLPLEVIESAVDQGVMVRPPQPIHIYRSFCDPSGARGDSFTCAIA 338


>gi|115374293|ref|ZP_01461578.1| ATP/GTP-binding site motif A [Stigmatella aurantiaca DW4/3-1]
 gi|310818178|ref|YP_003950536.1| large terminase [Stigmatella aurantiaca DW4/3-1]
 gi|115368714|gb|EAU67664.1| ATP/GTP-binding site motif A [Stigmatella aurantiaca DW4/3-1]
 gi|309391250|gb|ADO68709.1| large terminase [Stigmatella aurantiaca DW4/3-1]
          Length = 472

 Score = 66.9 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/285 (10%), Positives = 64/285 (22%), Gaps = 31/285 (10%)

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
                           C + AGRG GKT   A  ++             I  +   +++T
Sbjct: 58  DFWARREQVPPDKFSTCFVMAGRGFGKTWCGARWVIKKAWQAK-SVGALIGPTAADVRDT 116

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
           +    S  L++ P       +      +                              D 
Sbjct: 117 MIRGASGILALSPPGFTPRYEPSKRRVT------------------WPNGVYAICYSADK 158

Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFT----ELNPNRFWIMTSNTRRLNGWFYD 239
                  +    + DE +     +                     ++T   R L      
Sbjct: 159 PDRLRGPNAGWGWGDEPASWKHDMAAVDQLPLVLRIGTREHPPQLLLTGTPRPLKKIEDL 218

Query: 240 IFNIPL----EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN 295
           +F        +     +  +      +         R   ++   + E+LG+        
Sbjct: 219 LFTNAETQQLKPGVVLRTGSSLSNAANLAPSAIANMRALANTRWGQQEVLGRLLFDVPGA 278

Query: 296 FI-PHNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVVVF 336
                 +                 I+  D    +  G D+T ++ 
Sbjct: 279 IFGSARWGRVHAEPHEYAQQLDRRIVSVDPSPTSETGSDETGIIV 323


>gi|225626397|ref|YP_002727892.1| terminase large subunit [Enterococcus phage EFAP-1]
 gi|225346568|gb|ACN86334.1| terminase large subunit [Enterococcus phage EFAP-1]
          Length = 574

 Score = 66.9 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 43/324 (13%), Positives = 94/324 (29%), Gaps = 60/324 (18%)

Query: 68  SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW--LISTRPG--MSIICIANSETQLKNT 123
               N      K  IS  R  GK+ L A + L+  L+   P     I+  AN++ Q    
Sbjct: 89  RKKKNKMRRFRKVYISLARKNGKSILVAGISLYEFLLGQYPNASRQIVAAANTKDQA-GI 147

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
           ++  +   L  L        +   ++         E ++                     
Sbjct: 148 VFNMLKSQLKALRAVSDGTRKVTKVNKKDIEHLEDESTVKP---------------LSSD 192

Query: 184 FVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD--- 239
                    +    DE        + + +    ++       I+++ T+ LNG  +    
Sbjct: 193 VDSLDGLDVLCGVLDEYGEAKSTAMIEVLESSQSQQLQGLILIISTTTKNLNGPMHSIEY 252

Query: 240 -------IFNIPLEDWKRYQIDTRTVEGIDSG--FHEG--IISRYGLDSDVARIEI---- 284
                     +  + +     +  ++  +D    + +   +     L   +   ++    
Sbjct: 253 PFITKLLNEEVEADAYLALCWEMDSLSEVDDEANWIKSNPLFENAQLHETMYEHKVNSLA 312

Query: 285 ---------------LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329
                          +  + Q   ++FI     E     +  D    P+ +G D+A  G 
Sbjct: 313 EYKAKGDMSGWLTKEMNFWVQSSQDSFIDKESWEAVKQTKPYDIKGRPVYIGLDLARTG- 371

Query: 330 DKTVVVFRRGNIIEHIFDWSAKLI 353
           D T V     + +  I +    L+
Sbjct: 372 DMTAV-----SWVIPIAEERKLLL 390


>gi|163735142|ref|ZP_02142578.1| hypothetical protein RLO149_23000 [Roseobacter litoralis Och 149]
 gi|161391600|gb|EDQ15933.1| hypothetical protein RLO149_23000 [Roseobacter litoralis Och 149]
          Length = 267

 Score = 66.9 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/275 (12%), Positives = 75/275 (27%), Gaps = 42/275 (15%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
            P  WQ   M +                    + A R  GK+T    M    ++  P   
Sbjct: 29  PPDPWQRSLMNSTSDV--------------IMVLASRRSGKSTTVGVMAGQELAK-PDHQ 73

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           +I ++ +  Q +         W  M             LH     + +            
Sbjct: 74  VIILSPTLAQSQLLFAKIAFTWEKMALPIETRRRTMTELHLKNGSSVVCVP--------- 124

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                     +       +      +  DEA+  PD +  +     +    N   +  + 
Sbjct: 125 --------AGQDGEGARGYGVKNGILAFDEAAFIPDKVFGA---TLSIAEDNAKTVFITT 173

Query: 230 TRRLNGWFYDIF--NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
               +G  Y+++  +    + +R +  +  +  +         +   ++     +E   Q
Sbjct: 174 PGGKSGKAYEMWTNHDLYPEVERIRACSLDLPRMAKLVARQRKTLSKME---FDVEHGLQ 230

Query: 288 FPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGC 322
           +  +    F   + I  A   +  +  +  L  G 
Sbjct: 231 WMGRG-TPFFDPDTIRAAY-TDTPELKFGDLYAGI 263


>gi|29366741|ref|NP_813786.1| DNA packaging protein B [Pseudomonas phage gh-1]
 gi|29243600|gb|AAO73179.1|AF493143_40 DNA packaging protein B [Pseudomonas phage gh-1]
          Length = 582

 Score = 66.9 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 47/379 (12%), Positives = 93/379 (24%), Gaps = 86/379 (22%)

Query: 24  CVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS 83
              SF  F+  F  W     P     +P + Q++  + +                +  + 
Sbjct: 14  IKRSFVAFL--FVLWRALNLP-----KPTKCQIDMAKKLSAGDER----------RFILQ 56

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           A RGIGK+ +    ++W +   P +  + ++ S+ +        + + + +LP  H  + 
Sbjct: 57  AFRGIGKSFITCAFVVWKLWNNPDLKFMIVSASKERADANSVF-IKRIIDLLPFLHELKP 115

Query: 144 QS-LSLHPSGWYAELLEQSMGIDSKHYTITCRTY----------SEERPDTFVGPHNTHG 192
                     +     +       K   IT +              E P+          
Sbjct: 116 GPGQRDSSLAFDVGPAKPDHSPSVKSVGITGQLTGSRADILIADDVEVPNNSATQTARDH 175

Query: 193 MAVFNDEASGT------------PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-- 238
           +     E                P                   W      +    W    
Sbjct: 176 LGELVKEFDAILKPGGTIIYLGTPQTEMTLYRELEGRGYVTTIWPARY-PKDQADWDSYG 234

Query: 239 -----DIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI------LGQ 287
                 +      D   +   T  V   D          YG      +  +      + +
Sbjct: 235 PRLAPMLAAELQADGSLFWAPTDEV-RFDDKDLRERELSYGKGGFALQFMLNPNLSDMEK 293

Query: 288 FPQQEVNNFI--------PHNYI---EEAMSREAID-------------------DLYAP 317
           +P +  +  +        P   I     A   + +                      YA 
Sbjct: 294 YPLKLRDFIVGTFAQDKGPTTLIWMPNAANECKGVPVVGLKGDRFHRYESVGQATASYAQ 353

Query: 318 LIMGCDIAGEGGDKTVVVF 336
            I+  D +G G D+T    
Sbjct: 354 KILVIDPSGRGKDETGYAV 372


>gi|300173892|ref|YP_003773058.1| phage terminase large subunit [Leuconostoc gasicomitatum LMG 18811]
 gi|299888271|emb|CBL92239.1| phage terminase, large subunit, pbsx family [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 427

 Score = 66.5 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 91/295 (30%), Gaps = 28/295 (9%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
            N      A    RG GK+   A  ++  I T+P ++ + +       + + +  + K  
Sbjct: 20  FNSKARYIAYKGSRGSGKSEGVATKVILDIVTKPYVNWLVLRRYANTNRQSTFTLLQKVA 79

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
           + +     F+                   +        I  R   +    T +     + 
Sbjct: 80  NRMGVGSLFQFN------------GSLPEITFKPTGQKILFRGADKPLSITSISVETGNL 127

Query: 193 MAVFNDEASGTP-----DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
             ++ +EA         + +++S+ G   + +     ++T N      W    F      
Sbjct: 128 CRLWVEEAYQMELEESFETVDESMRGVIDDPDGFYQTVLTFNPWNERHWLKKRFFDEDTR 187

Query: 248 WKR---YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE 304
                      +    +D  +   ++     +   AR+ + G++          +  +E+
Sbjct: 188 VNNSLAITTTYKDNPFLDVDYVNRLLEMKKRNPRRARVAVDGEW-GVAEGLIYENTIVEK 246

Query: 305 AMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNI----IEHIFDWSAKLIQE 355
              RE +    + ++ G D  G G D T  +    N     I  + +   + +  
Sbjct: 247 FDIREVL--KGSHIVRGMD-WGYGPDPTTFIEYAINTKTKDIYILKEMYKQHMLT 298


>gi|154488071|ref|ZP_02029188.1| hypothetical protein BIFADO_01641 [Bifidobacterium adolescentis
           L2-32]
 gi|154083544|gb|EDN82589.1| hypothetical protein BIFADO_01641 [Bifidobacterium adolescentis
           L2-32]
          Length = 477

 Score = 66.5 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 72/289 (24%), Gaps = 46/289 (15%)

Query: 49  SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPG 107
            +   WQ +    V        +       + A+ +  R  GKT    W+ +   +  PG
Sbjct: 34  DRFDPWQRQINRIVLA-----KSADGFWSARNAVLSIPRQTGKTYDIGWVAIHRAARTPG 88

Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
           M I+  A   + +K+T       + S+       EM  L     G      ++ +   + 
Sbjct: 89  MRIVWTAQHFSVIKDT-------FESLCAIVLRPEMSGLVDPDHGISLAAGKEEIRFRNG 141

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
                                      +  DEA    D    S+L         +  I  
Sbjct: 142 SRIFFRARERGALRGV------KKIALLVIDEAQHLSDSAMASMLPTQNRAYNPQT-IYM 194

Query: 228 SNTRRLNG------------------------WFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
                                           +  D    PL+  +  + +         
Sbjct: 195 GTPPGPRDNGEAFTRLRDKARAGRTHSTLYVEFAADRDADPLDREQWRKANPSYPAHTSD 254

Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
                +      D    R E LG + +  ++  I     EEA       
Sbjct: 255 ESIANLWENLTGDD--FRREALGIWDEHALSRAIDRRQWEEATIDARRP 301


>gi|324117425|gb|EGC11331.1| hypothetical protein ERBG_02498 [Escherichia coli E1167]
          Length = 442

 Score = 66.5 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 71/259 (27%), Gaps = 29/259 (11%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL---KNTLWAEVSKWLSMLPH 137
           A+  GR  GKT +   +     + +          +  QL   +  ++    +    +  
Sbjct: 28  AVCCGRRWGKTVMLVNIATSFATRK------FAVPTTGQLIAGRVGIFTAQYRQYQEIWD 81

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP-HNTHGMAVF 196
                        S     L+      + +              D            AV 
Sbjct: 82  E-----------ISAVLQPLILSQSKNEKRIILRNGGRIDFWVTDNNKLAGRGRKYHAVL 130

Query: 197 NDEASG------TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250
            DEA+         +I  ++I     +     +   T N    + +FY I +     +  
Sbjct: 131 IDEAAFTKSPEMLEEIWPRAIRPTLVDYRGCAWVFSTPNGIDESNFFYAICHDESLGFVM 190

Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
           +   T +   I     E    +   D  V + E L +F     +  +  + +        
Sbjct: 191 HHAPTSSNPYIPKEELEETEKKS--DPRVWQQEYLAEFVDWSKDALLDVDKLLVDGQPIE 248

Query: 311 IDDLYAPLIMGCDIAGEGG 329
           +      +    D A +GG
Sbjct: 249 MPPYCDMIFAVMDTALKGG 267


>gi|282533135|gb|ADA82244.1| putative terminase [Escherichia phage K1G]
          Length = 416

 Score = 66.5 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/284 (11%), Positives = 67/284 (23%), Gaps = 28/284 (9%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           A   G G GKT +    +L  +   PG  +     +   +++  +    +  ++L     
Sbjct: 21  AYVGGFGSGKTFVGCLDLLTFMLKHPGTRLGYFGPTYPAIRDIFYPTFEEAANLLGLDVL 80

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
                          E++                       D           A   DE 
Sbjct: 81  V---------KSGDKEVVVTRGKTVLGTVICRSM-------DNPGSIVGFKIAAAVVDEL 124

Query: 201 SGTPDIINKSILGFFTELNPNRF-----WIMTSNTRRLNGWFYDIF-NIPLEDWKRYQID 254
                   +                    I  + T     + Y  F   P   +   Q  
Sbjct: 125 DVLSREKAELAWNKIVARMRLVIPGVINHISVTTTPEGFKFVYAKFKENPTPSYSMVQAS 184

Query: 255 TRTVEGI-DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
           T          +   +   Y   + +    + G+F      +   + Y       + +  
Sbjct: 185 THENARFLPPDYISSLTETY--PAQLINAYLNGEFVNLTSGSVY-YAYDRRKHRSKEVIQ 241

Query: 314 LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK-LIQET 356
               L +G D        + V  +R +    + +        +T
Sbjct: 242 PGDTLYIGQDFNVTKN-ASAVYVQRKDGWHAVAELKGLFDTPDT 284


>gi|118445162|ref|YP_879274.1| PBSX family phage terminase large subunit [Clostridium novyi NT]
 gi|118135618|gb|ABK62662.1| phage terminase, large subunit, PBSX family [Clostridium novyi NT]
          Length = 434

 Score = 66.5 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/244 (10%), Positives = 71/244 (29%), Gaps = 24/244 (9%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            G G GK+      ML+ +        +      + ++ +++ E    +  L   +   +
Sbjct: 34  GGAGSGKSKFVVQKMLYKLL-NEKRKCLVTRKVGSTIRESIFQEFKTLIGDLGIYNQCNI 92

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
               +            ++ + +    I       E+  +     +     +  +EA+  
Sbjct: 93  NKTDM------------TIELPNGSTFIFKGLDDSEKIKSISDISD-----IVIEEATEL 135

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD-IFNIPLEDWKRYQIDTRTVEGID 262
             +    +         N+   +  N      W Y   F    +     +   +    + 
Sbjct: 136 TLLDFTQLNLRMRTKQKNQQIHLMFNPVNKVNWVYKTFFEQKYDGALIVKTTYKNNPYLP 195

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEV---NNFIPHNYIEEAMSREAIDDLYAPLI 319
             + + I      +  + +I   G+F   +     N+ P ++  + +  +          
Sbjct: 196 KDYVKEIKQLKETNYTLYKIYAEGEFSSLDKRIFTNWQPLDF--DILDIKYEKVKNKLKE 253

Query: 320 MGCD 323
           MG D
Sbjct: 254 MGID 257


>gi|261368738|ref|ZP_05981621.1| phage terminase, large subunit, PBSX family [Subdoligranulum
           variabile DSM 15176]
 gi|282569160|gb|EFB74695.1| phage terminase, large subunit, PBSX family [Subdoligranulum
           variabile DSM 15176]
          Length = 417

 Score = 66.1 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/250 (10%), Positives = 61/250 (24%), Gaps = 20/250 (8%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
             GR   K++  +  ++  +   P    +        L+++++A++   +  L     F 
Sbjct: 37  KGGRASLKSSYVSVEVILQLIHHPDCHALVCRQVADTLRDSVYAQILWAIDKLGLTAKFR 96

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
                L                      I  R   + +    +     +   ++ +EA  
Sbjct: 97  CTQSPL------------QCTYLPTGQRILFRGLDDTQKIKSIKLPFGYIGVLWFEEADQ 144

Query: 203 TP--DIINKSILGFFTELNPNRFWIMTSNTRRLN-GWFYDIFNIPLEDWKRYQIDTRTVE 259
               +   +++              ++ N       W      +     + +        
Sbjct: 145 IKGGEDAVRNVQQSALRGGEFGLTFISFNPPSAARNWANKYALVQRPGKRVHHSSYLEAP 204

Query: 260 --GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE-EAMSREAIDDLYA 316
              +   F               R E LG+        F      E  A    +  D   
Sbjct: 205 PEWLGPKFLAQAEYIKETKPTKYRHEYLGEAVGNGTQVFDNIRLEELSAKRIRSFGDALN 264

Query: 317 PLIMGC--DI 324
            +  G   D 
Sbjct: 265 GVDWGWYPDP 274


>gi|307309864|ref|ZP_07589514.1| conserved hypothetical protein [Escherichia coli W]
 gi|306909582|gb|EFN40076.1| conserved hypothetical protein [Escherichia coli W]
 gi|315060632|gb|ADT74959.1| phage terminase large subunit [Escherichia coli W]
 gi|323378804|gb|ADX51072.1| hypothetical protein EKO11_2468 [Escherichia coli KO11]
          Length = 442

 Score = 66.1 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 71/259 (27%), Gaps = 29/259 (11%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL---KNTLWAEVSKWLSMLPH 137
           A+  GR  GKT +   +     + +          +  QL   +  ++    +    +  
Sbjct: 28  AVCCGRRWGKTVMLVNIATSFATRK------FAVPTTGQLIAGRVGIFTAQYRQYQEIWD 81

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP-HNTHGMAVF 196
                        S     L+      + +              D            AV 
Sbjct: 82  E-----------ISAVLQPLILSQSKNEKRIILRNGGRIDFWVTDNNKLAGRGRKYHAVL 130

Query: 197 NDEASG------TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250
            DEA+         +I  ++I     +     +   T N    + +FY I +     +  
Sbjct: 131 IDEAAFTKSPEMLEEIWPRAIRPTLVDYRGCAWVFSTPNGIDESNFFYAICHDESLGFVM 190

Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
           +   T +   I     E    +   D  V + E L +F     +  +  + +        
Sbjct: 191 HHAPTSSNPYIPKEELEETEKKS--DPRVWQQEYLAEFVDWSKDALLDVDKLLVDGQPVE 248

Query: 311 IDDLYAPLIMGCDIAGEGG 329
           +      +    D A +GG
Sbjct: 249 MPPHCDMIFAVMDTALKGG 267


>gi|227498429|ref|ZP_03928575.1| phage terminase large subunit [Acidaminococcus sp. D21]
 gi|226903887|gb|EEH89805.1| phage terminase large subunit [Acidaminococcus sp. D21]
          Length = 418

 Score = 66.1 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 33/262 (12%), Positives = 74/262 (28%), Gaps = 20/262 (7%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
            ++ GRG  K++     +  L+   P    + +      +KN+++ ++   L  L     
Sbjct: 29  WLAGGRGSTKSSFVGMEIPLLMLQHPDCHAVVLRKVGGTIKNSVYPQIQWGLEQLQVLDR 88

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
           F+ +      +          +G D      + +                +   V+ +E 
Sbjct: 89  FKYKMTPPEMTLERTGQKILFLGCDDPMKVKSIKLPFG------------YVGIVWLEEL 136

Query: 201 SGTP-DIINKSILGFFTELNPNRFWIMTSNTRR-LNGWFYDIFNIPLEDWKRYQIDTRTV 258
                    +++        P  +   T N  +  + W  +   +   D   ++     V
Sbjct: 137 DQFSGMEEIRNLCQSLLRGGPQYWVFCTYNPPKSRSSWVNEEILVDDPDRMVHRSTYLQV 196

Query: 259 E--GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA 316
               +   F +        +    R E LG+              +E+    E     + 
Sbjct: 197 PQKWLGEQFLQEAEKLKERNEMAYRHEYLGE-VTGTGGAVF--ENVEDLPLTEEALGQFD 253

Query: 317 PLIMGCDIAGEGGDKTVVVFRR 338
             + G D  G   D    V   
Sbjct: 254 HRLFGLDF-GFAVDPLAFVAMH 274


>gi|320458831|dbj|BAJ69452.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 478

 Score = 66.1 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 40/327 (12%), Positives = 82/327 (25%), Gaps = 54/327 (16%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             WQ   +  +                   IS  R +GKT      +  L + +P + ++
Sbjct: 39  DLWQQGLLYLM--LGKREDGLYACGEGGTVISICRQVGKTFTIGSAVFLLCAMQPNLKVL 96

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A+       T  +      + L   H   +               +Q +   +    +
Sbjct: 97  WTAHRTRTSDETFQSMCGFAKNKLMAGHVEHI----------RRANGQQEIAFRNGSRVM 146

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
                                     DEA          ++   T ++PN   +      
Sbjct: 147 FGAREQGFGRG------FDAVDVEIFDEAQILTVKALNDMIPA-TNVSPNPLIVFMGTPP 199

Query: 232 RLNGW------------------FYDIFN-----IPLEDWKRYQIDTRTVEGIDSGFHEG 268
           +                       Y  F+      P +  +  + +    +         
Sbjct: 200 QPGDPSETFADKRRDGLKHTDGMLYVEFSADPDCDPDDREQWAKANPSFPKRTSETAILR 259

Query: 269 IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEG 328
           +    G D +  R E LG +  +   + I     E         DL   L  G D     
Sbjct: 260 MRKLLGDDDN-FRREGLGIWDGENSISAIDPQQWEAGNI--DQPDLDGRLAFGLD---MP 313

Query: 329 GDKTVV----VFRR--GNIIEHIFDWS 349
            D++ +      R   G  + ++ ++ 
Sbjct: 314 PDRSALAIGMAVRHDDGTALINLQEYR 340


>gi|282534188|gb|ADA82296.1| putative terminase [Escherichia phage K1H]
 gi|282535239|gb|ADA82445.1| putative terminase [Escherichia phage K1ind3]
          Length = 416

 Score = 66.1 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/284 (11%), Positives = 66/284 (23%), Gaps = 28/284 (9%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           A   G G GKT +    +L  +   PG  +     +   +++  +    +  ++L     
Sbjct: 21  AYVGGFGSGKTFVGCLDLLTFMLKHPGTRLGYFGPTYPAIRDIFYPTFEEAANLLGLDVL 80

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
                          E++                       D           A   DE 
Sbjct: 81  V---------KSGDKEVVVTRGKTVLGTVICRSM-------DNPGSIVGFKIAAAVVDEL 124

Query: 201 SGTPDIINKSILGFFTELNPNRF-----WIMTSNTRRLNGWFYDIF-NIPLEDWKRYQID 254
                   +                    I  + T     + Y  F   P   +   Q  
Sbjct: 125 DVLSREKAELAWNKIVARMRLVIPGVTNHISVTTTPEGFKFVYAKFKENPTPSYSMVQAS 184

Query: 255 TRTVEGI-DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
           T          +   +   Y   + +    + G+F      +   + Y       +    
Sbjct: 185 THENARFLPPDYISSLTETY--PAQLINAYLNGEFVNLTSGSVY-YAYDRRKHRSKETIQ 241

Query: 314 LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK-LIQET 356
               L +G D        + V  +R +    + +        +T
Sbjct: 242 PGDTLYIGQDFNVTKN-ASAVYVQRKDGWHAVAELKGLFDTPDT 284


>gi|288818194|ref|YP_003432542.1| phage uncharacterized protein [Hydrogenobacter thermophilus TK-6]
 gi|288787594|dbj|BAI69341.1| phage uncharacterized protein [Hydrogenobacter thermophilus TK-6]
 gi|308751795|gb|ADO45278.1| phage uncharacterized protein [Hydrogenobacter thermophilus TK-6]
          Length = 470

 Score = 66.1 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 82/281 (29%), Gaps = 35/281 (12%)

Query: 74  NPTIFKCAISAGRGIGKTTLN-AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
           NP + +  ++A R  GKT+L     +LW I       I+CI  SE + K           
Sbjct: 61  NPQMKRVVVAAPREHGKTSLIYLGYVLWSILYGKHKFIVCIGASEQRAK----------- 109

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
             L         + ++               ID+ H T+  R   ++             
Sbjct: 110 EQLEDIRLELENNTAILQDFGEVIKRATVERIDTVHTTVISRGAGQKLRGLVK--RGERP 167

Query: 193 MAVFNDEAS--------GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244
             V  D+             D + K        L+ N    +       +    ++    
Sbjct: 168 DLVILDDIESEEHANSKSLRDKLKKWFYRVVMGLSQNAKIFVIGTILHYDSLLNELITRG 227

Query: 245 LE-DWKRYQIDTRT---VEGIDSGFHEGIISRYGLD--SDVARIEILGQFPQQEVNNFIP 298
            E  W   +    T          +    + +   +  S     E + + P  + +    
Sbjct: 228 QELGWFAKKYKAITDEGKPLHPHLWTLEALEKKKQEIGSYAFASEYMNE-PLSDEDRIFR 286

Query: 299 HNYIEEAMSREAIDDLYAPLIMGCDIAGEG---GDKTVVVF 336
             +I+     E +D     ++ G D +  G   GD T +  
Sbjct: 287 QEWIK--YYEEKLDLSKLDIVAGVDPS-TGKEKGDYTAIAV 324


>gi|291334408|gb|ADD94064.1| hypothetical protein [uncultured phage MedDCM-OCT-S01-C1]
          Length = 173

 Score = 66.1 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 53/170 (31%), Gaps = 24/170 (14%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
           + ++ A+  GRG GK+   A + +       G  I+C    +  ++ ++ A ++  +  +
Sbjct: 17  SRYRIAV-GGRGSGKSMTVAMLCILEAIQ--GKKILCCREYQNSIQESVHALIASLIDSM 73

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
                                +    +   S    I          ++    + TH    
Sbjct: 74  GV---------------AGFTVTRDKISHTSGGEFIFKGLAR--NAESIKSLYGTHV--A 114

Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL 245
           + +EA    +     +     E     ++ +T+N R       + F    
Sbjct: 115 WVEEAQTVSEESLSLLTPTIREAGS--YFFITANPRSEADPLTERFLKGR 162


>gi|213692678|ref|YP_002323264.1| phage Terminase [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213524139|gb|ACJ52886.1| phage Terminase [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 467

 Score = 66.1 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 40/327 (12%), Positives = 82/327 (25%), Gaps = 54/327 (16%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             WQ   +  +                   IS  R +GKT      +  L + +P + ++
Sbjct: 28  DLWQQGLLYLM--LGKREDGLYACGEGGTVISICRQVGKTFTIGSAVFLLCAMQPNLKVL 85

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A+       T  +      + L   H   +               +Q +   +    +
Sbjct: 86  WTAHRTRTSDETFQSMCGFAKNKLMAGHVEHI----------RRANGQQEIAFRNGSRVM 135

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
                                     DEA          ++   T ++PN   +      
Sbjct: 136 FGAREQGFGRG------FDAVDVEIFDEAQILTVKALNDMIPA-TNVSPNPLIVFMGTPP 188

Query: 232 RLNGW------------------FYDIFN-----IPLEDWKRYQIDTRTVEGIDSGFHEG 268
           +                       Y  F+      P +  +  + +    +         
Sbjct: 189 QPGDPSETFADKRRDGLKHTDGMLYVEFSADPDCDPDDREQWAKANPSFPKRTSETAILR 248

Query: 269 IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEG 328
           +    G D +  R E LG +  +   + I     E         DL   L  G D     
Sbjct: 249 MRKLLGDDDN-FRREGLGIWDGENSISAIDPQQWEAGNI--DQPDLDGRLAFGLD---MP 302

Query: 329 GDKTVV----VFRR--GNIIEHIFDWS 349
            D++ +      R   G  + ++ ++ 
Sbjct: 303 PDRSALAIGMAVRHDDGTALINLQEYR 329


>gi|323976986|gb|EGB72073.1| hypothetical protein ERFG_01987 [Escherichia coli TW10509]
          Length = 442

 Score = 66.1 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 63/230 (27%), Gaps = 29/230 (12%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL---KNTLWAEVSKWLSMLPH 137
           A+  GR  GKT +   +     + +          +  QL   +  ++    +    +  
Sbjct: 28  AVCCGRRWGKTVMLVNIATSFATRK------FAVPTTGQLIAGRVGIFTAQYRQYQEIWD 81

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP-HNTHGMAVF 196
                        S     L+      + +              D            AV 
Sbjct: 82  E-----------ISAVLQPLILSQSKNEKRIILRNGGRIDFWVTDNNKLAGRGRKYHAVL 130

Query: 197 NDEASG------TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250
            DEA+         +I  ++I     +     +   T N    + +FY I +     +  
Sbjct: 131 IDEAAFTKSPEMLEEIWPRAIRPTLVDYRGCAWVFSTPNGIDESNFFYAICHDESLGFVM 190

Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
           +   T +   I     E    +   D  V + E L +F     +  +  +
Sbjct: 191 HHAPTSSNPYIPKEELEETEKKS--DPRVWQQEYLAEFVDWSKDALLDVD 238


>gi|219873383|ref|YP_002477648.1| phage terminase, large subunit, pbsx family [Borrelia garinii
           Far04]
 gi|219694616|gb|ACL35135.1| phage terminase, large subunit, pbsx family [Borrelia garinii
           Far04]
          Length = 267

 Score = 66.1 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 69/247 (27%), Gaps = 34/247 (13%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMS 109
           Q E +  ++ H             K   S G   GKT L +++++  +           +
Sbjct: 49  QKEVLFDIESH----------DYSKVIFSGGIASGKTFLASYLLIKKLIENKSFYEKDTN 98

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
              I NS   L      ++ K    L    + + +S          EL            
Sbjct: 99  NFIIGNSIGLLMTNTIKQIEKICGFLGI-DYQKKKSGESFCKIAGLELN----------- 146

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                 Y  +  D+F      +   ++ +EA+          +    +       I  +N
Sbjct: 147 -----IYGGKNRDSFSKIRGGNSAIIYVNEATVIHKETLLEAIKRLRKG--KAIIIFDTN 199

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
                 +F   F    + +K Y   T       + F E     Y          + G++ 
Sbjct: 200 PESPTHFFKTDFIENKDVFKTYNFTTYDNPLNSADFIETQKKLYKHLPAYKARVLYGEWI 259

Query: 290 QQEVNNF 296
             E   F
Sbjct: 260 LNESTLF 266


>gi|291517493|emb|CBK71109.1| Phage terminase large subunit [Bifidobacterium longum subsp. longum
           F8]
          Length = 477

 Score = 66.1 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 70/288 (24%), Gaps = 44/288 (15%)

Query: 49  SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108
            +   WQ +    +             +     +S  R  GKT    W+ +   +  PGM
Sbjct: 34  DRFDVWQRQINRIILAKSADG----FWSARNTVLSIPRQTGKTYDIGWVAIHRAARTPGM 89

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            I+  A   + +K+T       + S+       EM  L     G      ++ +   +  
Sbjct: 90  RIVWTAQHFSVIKDT-------FESLCAIVLRPEMSGLVDPDHGISLAAGKEEIRFRNGS 142

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
                                     +  DEA    D    S+L         +  I   
Sbjct: 143 RIFFRARERGALRGV------KKIALLVIDEAQHLSDSAMASMLPTQNRAYNPQT-IYMG 195

Query: 229 NTRRLNG------------------------WFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264
                                          +  D    PL+  +  + +          
Sbjct: 196 TPPGPRDNGEAFTRLRDKTRAGRTHSTLYVEFAADRDADPLDREQWRKANPSYPAHTSDE 255

Query: 265 FHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
               +      D    R E LG + +  ++  I     EEA       
Sbjct: 256 SIANLWENLTGDD--FRREALGIWDEHALSRAIDRRQWEEATIDARRP 301


>gi|282547341|gb|ADA82397.1| putative terminase [Escherichia phage K1ind2]
          Length = 416

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/284 (11%), Positives = 66/284 (23%), Gaps = 28/284 (9%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           A   G G GKT +    +L  +   PG  +     +   +++  +    +  ++L     
Sbjct: 21  AYVGGFGSGKTFVGCLDLLTFMLKHPGTRLGYFGPTYPAIRDIFYPTFEEAANLLGLDVL 80

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
                          E++                       D           A   DE 
Sbjct: 81  V---------KSGDKEVVVTRGKTVIGTVICRSM-------DNPGSIVGFKIAAAVVDEL 124

Query: 201 SGTPDIINKSILGFFTELNPNRF-----WIMTSNTRRLNGWFYDIF-NIPLEDWKRYQID 254
                   +                    I  + T     + Y  F   P   +   Q  
Sbjct: 125 DVLSREKAELAWNKIVARMRLVIPGVINHISVTTTPEGFKFVYAKFKENPTPSYSMVQAS 184

Query: 255 TRTVEGI-DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
           T          +   +   Y   + +    + G+F      +   + Y       +    
Sbjct: 185 THENARFLPPDYISSLTETY--PAQLINAYLNGEFVNLTSGSVY-YAYDRRKHRSKETIQ 241

Query: 314 LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK-LIQET 356
               L +G D        + V  +R +    + +        +T
Sbjct: 242 PGDTLYIGQDFNVTKN-ASAVYVQRKDGWHAVAELKGLFDTPDT 284


>gi|293374297|ref|ZP_06620625.1| phage terminase, large subunit, PBSX family [Turicibacter sanguinis
           PC909]
 gi|292647130|gb|EFF65112.1| phage terminase, large subunit, PBSX family [Turicibacter sanguinis
           PC909]
          Length = 418

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 66/260 (25%), Gaps = 27/260 (10%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
             G G GK+      ++          +       T + N++W    + L  L       
Sbjct: 31  MGGAGSGKSHFVIQKLIIKACQSK-RKVCMCRRYGTTINNSIWDLTKQMLRQLKLLDQCS 89

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
           +               E+S+ + +    I      EE                F +E   
Sbjct: 90  VNKS------------ERSITLPNGSMIIMLGLDDEE-----KLLSINGVTDFFIEEIFE 132

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY--QIDTRTVEG 260
            P  I   I        P        N    + W +       +    +  + + +    
Sbjct: 133 VPQEIVDQIDLRLRAKAPYLQIYGCFNPISPHHWLHGFCEGDKQPADLFYDRSNYKDNPF 192

Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI-PHNYIEEAMSREAI---DDLYA 316
           +   + + + S    + +  RI   G +            N+I      +      D   
Sbjct: 193 LPQSYVDSLESLKTRNPNKYRIFAEGNWGTDLDGLVFKHINFINS-HDIDVNAMLKDKSW 251

Query: 317 PLIMGCDIAGEGGDKTVVVF 336
            +  G DI     D T +  
Sbjct: 252 QVRCGMDIGEL--DPTAIAV 269


>gi|327198111|ref|YP_004306641.1| terminase large subunit [Enterococcus phage EFRM31]
 gi|297179206|gb|ADI23907.1| terminase large subunit [Enterococcus phage EFRM31]
          Length = 574

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/324 (12%), Positives = 93/324 (28%), Gaps = 60/324 (18%)

Query: 68  SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW-LISTRPGM---SIICIANSETQLKNT 123
               N      K  IS  R  GK+ L A + L+  +  +       I+  AN++ Q    
Sbjct: 89  RKKKNGMRRFRKVYISLARKNGKSILVAGISLYEFLLGQYPQASRQIVAAANTKDQA-GI 147

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
           ++  +   L  L        +   ++         E ++                     
Sbjct: 148 VFNMLKSQLKALRAVSDGTRKVTKVNKKDIEHLEDESTVKP---------------LSSD 192

Query: 184 FVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD--- 239
                    +    DE        + + +    ++       I+++ T+ LNG  +    
Sbjct: 193 ADSLDGLDVLCGVLDEYGEAKSTAMIEVLESSQSQQLQGLILIISTTTKNLNGPMHSIEY 252

Query: 240 -------IFNIPLEDWKRYQIDTRTVEGIDSG--FHEG--IISRYGLDSDVARIEI---- 284
                     +  + +     +  ++  +D    + +   +     L   +   ++    
Sbjct: 253 PFITKLLNEEVEADAYLALCWEMDSLSEVDDEANWIKSNPLFENAQLHETMYEHKVNSLA 312

Query: 285 ---------------LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329
                          +  + Q   ++FI     E     +  D    P+ +G D+A  G 
Sbjct: 313 EYKAKGDMSGWLTKEMNFWVQSSQDSFIDKESWEAVKQTQPYDIKGRPVYIGLDLARTG- 371

Query: 330 DKTVVVFRRGNIIEHIFDWSAKLI 353
           D T V     + +  I +    L+
Sbjct: 372 DMTAV-----SWVIPIAEERKLLL 390


>gi|293433738|ref|ZP_06662166.1| hypothetical protein ECCG_01867 [Escherichia coli B088]
 gi|291324557|gb|EFE63979.1| hypothetical protein ECCG_01867 [Escherichia coli B088]
          Length = 442

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 71/259 (27%), Gaps = 29/259 (11%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL---KNTLWAEVSKWLSMLPH 137
           A+  GR  GKT +   +     + +          +  QL   +  ++    +    +  
Sbjct: 28  AVCCGRRWGKTVMLVNIATSFATRK------FAVPTTGQLIAGRVGIFTAQYRQYQEIWD 81

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP-HNTHGMAVF 196
                        S     L+      + +              D            AV 
Sbjct: 82  E-----------ISAVLQPLILSQSKNEKRIILRNGGRIDFWVTDNNKLAGRGRKYHAVL 130

Query: 197 NDEASG------TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250
            DEA+         +I  ++I     +     +   T N    + +FY I +     +  
Sbjct: 131 IDEAAFTKSPEMLEEIWPRAIRPTLVDYRGCAWVFSTPNGIDESNFFYAICHDESLGFVM 190

Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
           +   T +   I     E    +   D  V + E L +F     +  +  + +        
Sbjct: 191 HHAPTSSNPYIPKEELEETEKKS--DPRVWQQEYLAEFVDWSKDALLDVDKLLVDGQPVD 248

Query: 311 IDDLYAPLIMGCDIAGEGG 329
           +      +    D A +GG
Sbjct: 249 MPPHCDMIFAVMDTALKGG 267


>gi|167770494|ref|ZP_02442547.1| hypothetical protein ANACOL_01839 [Anaerotruncus colihominis DSM
           17241]
 gi|167667089|gb|EDS11219.1| hypothetical protein ANACOL_01839 [Anaerotruncus colihominis DSM
           17241]
          Length = 418

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/252 (12%), Positives = 71/252 (28%), Gaps = 19/252 (7%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
            +  GRG  K++  +  +   +      + IC       L+++++A++   +  L    +
Sbjct: 28  WLKGGRGSTKSSFISVEIPLGMVQDKQANAICYRKFGNTLESSVYAQLIWAIEQLGIAEY 87

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
           + +    +  +                   +  R   +      +   + +   ++ +EA
Sbjct: 88  WTINKSPMRLT------------YRPTGQVVLFRGLDDPNKSKSIKLPHGYFKYIWFEEA 135

Query: 201 SGTPD-IINKSILGFFTELNPNRFWIMTSNTRRLN-GWFYDIFNIPLEDWKRYQIDTRTV 258
               D    + +       +       + N  +    W  +   IP +D   +      V
Sbjct: 136 DQYDDMEEIRKVTQSVIRSSGKPKVFYSYNPPKSVQSWINNEILIPRKDQIVHHSTYLDV 195

Query: 259 E--GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH---NYIEEAMSREAIDD 313
               +   F         +  D  R E LG+        F         EE + R     
Sbjct: 196 PKAWLGDQFLTEAEHLKNVKPDAYRHEYLGEVTGTGGEVFDNIRLEEITEEQIFRFDNIR 255

Query: 314 LYAPLIMGCDIA 325
                    D A
Sbjct: 256 QGNDWGYAADPA 267


>gi|149174861|ref|ZP_01853485.1| hypothetical protein PM8797T_10814 [Planctomyces maris DSM 8797]
 gi|148846198|gb|EDL60537.1| hypothetical protein PM8797T_10814 [Planctomyces maris DSM 8797]
          Length = 568

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 52/393 (13%), Positives = 101/393 (25%), Gaps = 114/393 (29%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             WQ + +E++             TI +  +    G GK                   II
Sbjct: 57  DDWQWDILESLFDL----------TIRRVFVKGNTGCGKGAAAGIACCTYFHIWNDAKII 106

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
              +S    +   + EV KW   +  +   ++ +  +  +                    
Sbjct: 107 ITRDSVRTAQKIAFGEVDKWWRKMRFKPPGKLLTSGVFDN-----------------NQH 149

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
           +    + +  + F G H+ H +  + DEA+       +                  SN  
Sbjct: 150 SISLANPQHIEGFRGAHSPH-VFFWFDEATA---PNLEDKYKLANTQAKKFL--ALSNPS 203

Query: 232 RLNGWFYDIFN-----------IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL----- 275
            L+G F D F                + +   +       +     E  ++  G      
Sbjct: 204 TLSGTFRDSFPVVNPDKTQTIIDQYGNTRCITVSGWECTNVKEKCLEQPVAPIGGIKISD 263

Query: 276 -------------------------------------DSDVARIEILGQFPQQEVN-NFI 297
                                                D  +  +  LG+FP Q+ +   I
Sbjct: 264 NYYPHGSPIAADDFEKVQPRIPGQTCYDEFMALLNDADPLIRNVYALGKFPDQDPDKQVI 323

Query: 298 PHNYIEEAMSREAIDD-----LYAPLIM---------------GCDIA--GEGGDKTVVV 335
             +++ E +      +           +               G D+A    G D +V+ 
Sbjct: 324 LPDWLIEPVKFWTRWNRLCLRAREQFHILALKLLEQILPVEGFGLDVAASRFG-DASVLA 382

Query: 336 F--RRGNIIEHIFDWSAKLIQETNQEGCPVGSS 366
              R G  I  I +      Q+T        +S
Sbjct: 383 VGGRYG--IRAIHECQFSDTQQTMSWVLETANS 413


>gi|108799880|ref|YP_640077.1| phage terminase [Mycobacterium sp. MCS]
 gi|119868990|ref|YP_938942.1| phage terminase [Mycobacterium sp. KMS]
 gi|108770299|gb|ABG09021.1| phage Terminase [Mycobacterium sp. MCS]
 gi|119695079|gb|ABL92152.1| phage Terminase [Mycobacterium sp. KMS]
          Length = 489

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/308 (12%), Positives = 67/308 (21%), Gaps = 55/308 (17%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             WQ E   +V                       RG GK+TL A   L+   T    +++
Sbjct: 49  REWQQELAGSVLDADPRPRTAGWML--------PRGQGKSTLLAAYGLYDFFTGDEGAVV 100

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
           C+   + +    ++    + + +           L+     +   L              
Sbjct: 101 CVVAVDERQAGIIFGIARRMVELS--------DELASRCQVFKERLYIPERDAHFHCL-- 150

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT- 230
                    P                DEA        + +             I      
Sbjct: 151 ---------PAEPKRLEGLDYTTALLDEAGVASRDSYEVLT-LAQGKRAQSTLIAIGTPG 200

Query: 231 ------------------RRLNGWFYDIFNIPL-EDWKRYQIDTRT--VEGIDSGFHEGI 269
                                    +  F+    ED               +D   H   
Sbjct: 201 PDPNNQVLADLRNYAADHPEDASLVWREFSAAGFEDHPVDCTHCWELANPALDDFLHRDA 260

Query: 270 IS---RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAG 326
           +             R   L QF       F+P    +   +   I D    +++  D + 
Sbjct: 261 LYALLPPKTREATFRRARLCQFASDTDGAFLPQGVWDGLSTGRPIPD-GTEVVVALDGS- 318

Query: 327 EGGDKTVV 334
              D T +
Sbjct: 319 FSDDTTAL 326


>gi|327198525|ref|YP_004327112.1| phage terminase large subunit [Pseudoalteromonas phage H105/1]
 gi|304367920|gb|ADM26679.1| phage terminase large subunit [Pseudoalteromonas phage H105/1]
          Length = 414

 Score = 65.4 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 74/284 (26%), Gaps = 30/284 (10%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           A   G G GKT +    +L      P         S   +++  +               
Sbjct: 21  AYVGGFGSGKTFVGCMDLLNFFGKHPRTRQGYFGTSYPSIRDIFYP-------------T 67

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
           FE  +L +  +    E  ++     +  Y  T    S +RP+T              DE 
Sbjct: 68  FEEAALMMGFTVDIKESNKEVHVYRNGFYYGTVICRSMDRPNT---IVGFKVSRALVDEI 124

Query: 201 SGTPDI----INKSILGFFTEL-NPNRFWIMTSNTRRLNGWFYDIF--NIPLEDWKRYQI 253
              P          I+       +     I  + T     + Y  F              
Sbjct: 125 DTLPKDKATNAWNKIVARLRLKIDGVENGIGVTTTPEGFLFVYSKFKDEPTKSYSMVQAS 184

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
                E +   + + +   Y     +    ++G+F      +  P  Y     +      
Sbjct: 185 TYENAEFLPDDYIDTLKETYPEG--LIDAYLMGKFVNLTAGSVYPQ-YGRNKNNSFESIQ 241

Query: 314 LYAPLIMGCDIAGEGGDKTVVVF-RRG--NIIEHIFDWSAKLIQ 354
              PLI+G D          +   R G  + +E +         
Sbjct: 242 PQDPLIVGMDF-NVNDMAACIFVERDGIYHCVEELTKGRDTDYM 284


>gi|92117273|ref|YP_577002.1| phage terminase [Nitrobacter hamburgensis X14]
 gi|91800167|gb|ABE62542.1| phage Terminase [Nitrobacter hamburgensis X14]
          Length = 540

 Score = 65.4 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/327 (13%), Positives = 92/327 (28%), Gaps = 58/327 (17%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI-SAGRGIGKTTLNAWMMLWLISTR---PG 107
             WQ   +  +        N     + K  +    RG  K++L+A + L         PG
Sbjct: 47  DPWQERIVRRIY----GPRNPDGSRVVKTVVLLIPRGNRKSSLSAAISLLHAIGPEKIPG 102

Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
              +  A    Q     + E    + M        + +  ++ +               K
Sbjct: 103 GECVLAAADRKQAS-IAFKEAVDVVRM----DKRLVSATRIYDAF----------NSAKK 147

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIM 226
                  ++ E         H      +  DE +      +  ++     ++  +   + 
Sbjct: 148 IVLKKGGSFIETISSDAGTAHGKSIALLVADELAQWRGTDLWIALKSSLPKVKDSLLVVA 207

Query: 227 TSNTRRLNGWFYDIFNIPLE----------------------DWKRYQIDTRTVEGIDSG 264
           T++ R  +   ++I +   +                      DWK   +  R   G+  G
Sbjct: 208 TTSGRGQDNLAWEIVDRARKVATGEINDPSMLPILFETDAGADWKDEALLYRANPGLTLG 267

Query: 265 F--------HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE-AMSREAIDDLY 315
           +                    D+ +   L  +       F+     +E A   +      
Sbjct: 268 YQDISGLRQLVREAETSMTARDMVQNLHLNVWLDSSAAPFVDMTVYDEGAGEIDLAALEG 327

Query: 316 APLIMGCDIAGEGGDKTVV--VFRRGN 340
            P  +G D++    D +V+   FR G+
Sbjct: 328 EPCWLGVDLS-SSIDLSVIVAAFRDGD 353


>gi|304440418|ref|ZP_07400307.1| PBSX family phage terminase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371170|gb|EFM24787.1| PBSX family phage terminase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 388

 Score = 65.4 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/264 (12%), Positives = 72/264 (27%), Gaps = 25/264 (9%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
             GR  GK++  A  ++  I   P ++++C+      L+ + + ++ + +  L    +F+
Sbjct: 4   RGGRASGKSSFIAQEIILDIIKYP-ITVLCVRKVGNTLQESCYEQIKEAIDQLNLGEYFK 62

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-AS 201
           +    L             +    +  +I  R   +      +         ++ +E A 
Sbjct: 63  LNISPLK------------ITYTPRGNSIIFRGADDPAKIKSIKMAKYPIARLWIEELAE 110

Query: 202 GTPDIINKSILGFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDWKRYQID 254
              +     I                +  T N   R   W    +      E+   +   
Sbjct: 111 FKTEDEVSMIENSILRGELEDGLEYKFYYTYNPPKRKQSWVNKRYETTFLAENTFVHHST 170

Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314
                 I   F               R E LG+         +P + +            
Sbjct: 171 YLDNPYISQAFKNEAEHIKNTKPLKYRWEYLGEPIGSG---VVPFDNLVFREISTKELLN 227

Query: 315 YAPLIMGCDIAGEGGDKTVVVFRR 338
           +  +  G D  G   D    +   
Sbjct: 228 FDNIRQGID-WGYANDPFAFIRLH 250


>gi|282547289|gb|ADA82346.1| putative terminase [Escherichia phage K1ind1]
          Length = 416

 Score = 65.4 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/284 (11%), Positives = 67/284 (23%), Gaps = 28/284 (9%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           A   G G GKT +    +L  +   PG  +     +   +++  +    +  ++L     
Sbjct: 21  AYVGGFGSGKTFVGCLDLLTFMLKHPGTRLGYFGPTYPAIRDIFYPTFEEAANLLGLDVL 80

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
                          E++                       D           A   DE 
Sbjct: 81  V---------KSGDKEVVVTCGKTVLGTVICRSM-------DNPGSIVGFKIAAAVVDEL 124

Query: 201 SGTPDIINKSILGFFTELNPNRF-----WIMTSNTRRLNGWFYDIF-NIPLEDWKRYQID 254
                   +                    I  + T     + Y  F   P   +   Q  
Sbjct: 125 DVLSREKAELAWNKIVARMRLVIPGVTNHISVTTTPEGFKFVYAKFKENPTPSYSMVQAS 184

Query: 255 TRTVEGI-DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
           T          +   +   Y   + +    + G+F      +   + Y       + +  
Sbjct: 185 THENARFLPPDYISSLTETY--PAQLINAYLNGEFVNLTSGSVY-YAYDRRKHRSKEVIQ 241

Query: 314 LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK-LIQET 356
               L +G D        + V  +R +    + +        +T
Sbjct: 242 PGDTLYIGQDFNVTKN-ASAVYVQRKDGWHAVAELKGLFDTPDT 284


>gi|291460129|ref|ZP_06599519.1| phage terminase, large subunit, PBSX family [Oribacterium sp. oral
           taxon 078 str. F0262]
 gi|291417470|gb|EFE91189.1| phage terminase, large subunit, PBSX family [Oribacterium sp. oral
           taxon 078 str. F0262]
          Length = 408

 Score = 65.4 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/249 (12%), Positives = 76/249 (30%), Gaps = 18/249 (7%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAG-RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
           ++      N  +   T  +  +  G RG  K+   A  M++ +   P  S +C+      
Sbjct: 4   SLQEVVGKNYVDFWNTKKRYRVCKGSRGSKKSKTTALNMIYRLYRYPESSGLCVRRYANT 63

Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
           L++++++++   +  L    +F+     L             +   +    +        
Sbjct: 64  LRDSVFSDLKWAIHRLQLDAYFDCLVSPLQI-----------VRRSTGQKILFRGLDESL 112

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF---WIMTSNTRRLNGW 236
           +  +           V+ +EA    +     +        P  +     +T N      W
Sbjct: 113 KITSISVERGC-LCFVWIEEAYEVAEDDFNKLDMSIRGEVPEGYFKQLTLTFNPWSATSW 171

Query: 237 F-YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN 295
                F+ P +         +  E +D             +    RIE  G++       
Sbjct: 172 LKARFFDAPDDTIFTKTTTWQCNEWLDDADRHIFEMMRRQNPRRYRIEGDGEW-GIAEGL 230

Query: 296 FIPHNYIEE 304
             P++ +E+
Sbjct: 231 IYPNHRMED 239


>gi|332654528|ref|ZP_08420271.1| phage terminase, large subunit, PBSX family [Ruminococcaceae
           bacterium D16]
 gi|332516492|gb|EGJ46098.1| phage terminase, large subunit, PBSX family [Ruminococcaceae
           bacterium D16]
          Length = 418

 Score = 65.4 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 63/240 (26%), Gaps = 24/240 (10%)

Query: 87  GIGKTTLNA-WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
             GKT         W +S     +      S   ++  L +E+   L  L          
Sbjct: 36  RSGKTLCTGLSFFCWAMSCYQDKTFALCGKSIPSVRRNLLSELLPILRQLGFSCR----- 90

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
                           + +   H + T   +      +              DE +  P 
Sbjct: 91  ---------ERASRNQLTVTMGHRSNTFYLFGGLDERSAALVQGITLAGALLDEVALMPR 141

Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT--RTVEGIDS 263
              + +    +       W    N      WFY  +    E+ K  ++         +  
Sbjct: 142 SFVEQVCARCSVEGSR-LWFS-CNPESPAHWFYQEWIQKAEEKKVLRLSFAMTDNPSLSP 199

Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
              E   + +       R  +LG++           ++  + + RE   D+  P  + CD
Sbjct: 200 AMLERYRTMFQG--AFYRRFVLGEWVN-AEGLVY--DFFSQDLVREPPLDVSGPFYVSCD 254


>gi|110005055|emb|CAK99386.1| putative prophage terminase large subunit protein [Spiroplasma
           citri]
          Length = 568

 Score = 65.4 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/323 (11%), Positives = 80/323 (24%), Gaps = 64/323 (19%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI- 110
             WQ  F+EA+        N          +  GRG GKT L + + L  +      +  
Sbjct: 81  ELWQKAFLEALYGFYDKKTNLRRFKEALLIV--GRGNGKTALASAIALKSLILDNEANAE 138

Query: 111 -ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
              IA    Q K                      + +               +  D   +
Sbjct: 139 LYSIATKRDQAKRV-------------------YEEMRRMIFINPNLNKILKVKRDKIEF 179

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMTS 228
                 +     +T       +   V  DE +      I   +     +       ++T+
Sbjct: 180 IHNNSFFQPLSSET-KTLDGLNPYFVVLDEVAMMEKRDIYDVMRTATAKRKDYLMLLITT 238

Query: 229 NTRRLNGWFYDIFNIP----------------------LEDWKRYQIDTRTVE------- 259
           N       F + ++                          +WK +    +          
Sbjct: 239 NGSIRENIFDERYSYAEKVLENTIKDNKFLPWIYELDERNEWKNFNNLYKANPNLGISKY 298

Query: 260 --GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA----MSREAIDD 313
                + + E +I+     + + +            +       +E      ++ +    
Sbjct: 299 IDNFKAEWQEALITPTQQPNFLIKH---CNLKSNLDSALFSRLDLETKNNKIINTDEYLI 355

Query: 314 LYAPLIMGCDIAGEGGDKTVVVF 336
                 +G D++    D + VVF
Sbjct: 356 KNRICTIGIDLSKT-NDLSAVVF 377


>gi|298480040|ref|ZP_06998239.1| PBSX family phage terminase [Bacteroides sp. D22]
 gi|298273849|gb|EFI15411.1| PBSX family phage terminase [Bacteroides sp. D22]
          Length = 476

 Score = 65.4 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 70/275 (25%), Gaps = 28/275 (10%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G  K+   A  +L++    PG           ++  +      K  +             
Sbjct: 61  GGAKSWTGAVWLLFMCLCYPGSKWFIGRAELKRITQSTLITFYKVCNQYGVDDTL----- 115

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                 +        +   +           +     +    +      + +E       
Sbjct: 116 ------YKYNGQYNYIEFFNGSRIDLLDLQYKPGDPLYERYGSIEYTGGWIEEGGEVNFG 169

Query: 207 INKSILGFF-----TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR----- 256
              ++          EL   R   +T N ++   W YD F  P +  +  +         
Sbjct: 170 AYDTLKTRIGRHLNNELGLRRKLFITCNPKK--NWMYDTFYKPDKKGELPEYMYYLACLV 227

Query: 257 -TVEGIDSGFHEGIISRYGLDSDVARIEILGQFP-QQEVNNFIPHNYIEEAMSREAIDDL 314
                ID  + EG+      D       + G +      N    H+ I E    +     
Sbjct: 228 QENPFIDPDYIEGLK--TTKDKVKRERLLKGNWEYDDNPNALCSHDAICEIFGNKISIKT 285

Query: 315 YAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS 349
               I G DIA  G D   +    G  I  +  + 
Sbjct: 286 GTNYITG-DIARFGADYARLAVWDGWHIIELQCFP 319


>gi|139473519|ref|YP_001128235.1| phage terminase [Streptococcus pyogenes str. Manfredo]
 gi|134271766|emb|CAM29999.1| putative phage terminase [Streptococcus pyogenes str. Manfredo]
          Length = 471

 Score = 65.4 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/298 (13%), Positives = 77/298 (25%), Gaps = 44/298 (14%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ   +  +       +       +       R  GKT +   + LW +    G+ I+ 
Sbjct: 43  PWQENMLIPIMAVDEDGLWVHQKYGYAI----PRRNGKTEVVYIVELWAL--HKGLKILH 96

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            A+  +      + +V K+L M  +                  + +        +    +
Sbjct: 97  TAHRISTSH-ASFEKVKKYLEMSGYVD--------------GEDFISNKAKGQERIEFKS 141

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR- 231
                + R  T  G        +  DEA         ++    T+ +     IM      
Sbjct: 142 SGAVIQFRTRTSNGGLGEGFDLLIIDEAQEYTSEQESALKYTVTDSDNPMT-IMCGTPPT 200

Query: 232 --------------------RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271
                               R +GW     +                          I +
Sbjct: 201 MVSTGTVFEAYRKDCLKGNKRYSGWAEWSVDEMQPIHDVKSWYIANPSMGFHLNERKIEA 260

Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329
             G D     I+ LG +P     + I        +  E + +L + L +G     +G 
Sbjct: 261 ELGEDEIDHNIQRLGYWPSFNQKSVISEKEW-AKLKVEQVPELKSKLFVGIKFGQDGN 317


>gi|258543723|ref|YP_003189156.1| hypothetical protein APA01_26850 [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634801|dbj|BAI00777.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01]
 gi|256637857|dbj|BAI03826.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-03]
 gi|256640911|dbj|BAI06873.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-07]
 gi|256643966|dbj|BAI09921.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-22]
 gi|256647021|dbj|BAI12969.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-26]
 gi|256650074|dbj|BAI16015.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-32]
 gi|256653064|dbj|BAI18998.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256656118|dbj|BAI22045.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-12]
          Length = 469

 Score = 65.4 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 80/294 (27%), Gaps = 43/294 (14%)

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWM--MLWLISTRPG-------MSIICIANSE 117
               +       + A+  GR  GK+ + A +   L  +             ++  IA   
Sbjct: 51  TGRTDLPLEAFRRAALICGRRAGKSRVLALLGTCLATLKDYRPYLSAGEVATVGVIAADR 110

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
            Q +   +  V   +S++P                      ++ + +  +   I   T S
Sbjct: 111 KQARTI-FRYVRGLISLVPE------------MEAEVTRETDEIIEMAGRRVVIEIGTAS 157

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGT--------PDIINKSILGFFTELNPNRFWIMTSN 229
                 F         AV  DE +           + I +++      +  +   +  S+
Sbjct: 158 ------FRATRGYTYAAVLCDEIAFWRDDSSANPDEEILRALRPGLATIPGSMLLLA-SS 210

Query: 230 TRRLNGWFYDIF--NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
                G  +  F      +          T E       +     Y  D   A  E   +
Sbjct: 211 PYARRGVLWKTFKRYYGQDGATTLVWKAATREMNPEFDVQEEQEAYEEDPAAAAAEYGAE 270

Query: 288 FPQQEVNNFIPHNYIEEAM---SREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
           F + ++ +F+    +E        E   +     +   D +G   D   +    
Sbjct: 271 F-RSDIASFVAPEVVEACTTVGRYELPRNSQHRYVAFVDPSGGSSDSMTLAIAH 323


>gi|289167314|ref|YP_003445583.1| terminase large subunit [Streptococcus mitis B6]
 gi|288906881|emb|CBJ21715.1| terminase large subunit [Streptococcus mitis B6]
          Length = 418

 Score = 65.4 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 76/273 (27%), Gaps = 25/273 (9%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
           +P I       GRG GK++     ++  +  R  ++ +CI  ++  L+ +++ ++   +S
Sbjct: 22  DPKILHVVEKGGRGSGKSSDLGHTII-QLIMRYPVNAVCIRKTDNTLEQSVYEQLKWAIS 80

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
                H F++    L             +    +   I  R   +      +        
Sbjct: 81  EQGVSHLFKINKSPLK------------ITYIPRGNYIIFRGAQDPERIKSLKDSRFPFA 128

Query: 194 AVFNDE-ASGTPDIINKSILGFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFNI--PL 245
             + +E A    +   K+I                +  + N   R   W    +      
Sbjct: 129 IGWIEELAEFKTEDEVKTITNSLLRGELDDGLFYKFFYSYNPPKRKQSWVNKKYESVIQP 188

Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA 305
            +   +         I   F E   +         R E LG+          P   +   
Sbjct: 189 PNTHVHHSTYLDNPYISQAFIEEAEATRERSEKRYRWEYLGEAIGSG---VAPFENLVFR 245

Query: 306 MSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
              +     +  +  G D  G   D    V   
Sbjct: 246 KITDEEIARFDNIRQGNDF-GYANDPLAFVRWH 277


>gi|167763812|ref|ZP_02435939.1| hypothetical protein BACSTE_02192 [Bacteroides stercoris ATCC
           43183]
 gi|167697928|gb|EDS14507.1| hypothetical protein BACSTE_02192 [Bacteroides stercoris ATCC
           43183]
          Length = 476

 Score = 65.4 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 70/275 (25%), Gaps = 28/275 (10%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G  K+   A  +L++    PG           ++  +      K  +             
Sbjct: 61  GGAKSWTGAVWLLFMCLCYPGSKWFIGRAELKRITQSTLITFYKVCNQYGVDDTL----- 115

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                 +        +   +           +     +    +      + +E       
Sbjct: 116 ------YKYNGQYNYIEFFNGSRIDLLDLQYKPGDPLYERYGSIEYTGGWIEEGGEVNFG 169

Query: 207 INKSILGFF-----TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR----- 256
              ++          EL   R   +T N ++   W YD F  P +  +  +         
Sbjct: 170 AYDTLKTRIGRHLNNELGLRRKLFITCNPKK--NWMYDTFYKPDKKGELPEYMYYLACLV 227

Query: 257 -TVEGIDSGFHEGIISRYGLDSDVARIEILGQFP-QQEVNNFIPHNYIEEAMSREAIDDL 314
                ID  + EG+      D       + G +      N    H+ I E    +     
Sbjct: 228 QENPFIDPDYIEGLK--TTKDKVKRERLLKGNWEYDDNPNALCSHDAICEIFGNKISIKT 285

Query: 315 YAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS 349
               I G DIA  G D   +    G  I  +  + 
Sbjct: 286 GTNYITG-DIARFGADYARLAVWDGWHIIELQCFP 319


>gi|23335598|ref|ZP_00120832.1| hypothetical protein Blon03000707 [Bifidobacterium longum DJO10A]
 gi|189440021|ref|YP_001955102.1| phage terminase large subunit [Bifidobacterium longum DJO10A]
 gi|189428456|gb|ACD98604.1| Phage terminase large subunit [Bifidobacterium longum DJO10A]
          Length = 477

 Score = 65.4 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 70/288 (24%), Gaps = 44/288 (15%)

Query: 49  SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108
            +   WQ +    +             +     +S  R  GKT    W+ +   +  PGM
Sbjct: 34  DRFDVWQRQINRIILAKSADG----FWSARNTVLSIPRQTGKTYDIGWVAIHRAARTPGM 89

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            I+  A   + +K+T       + S+       EM  L     G      ++ +   +  
Sbjct: 90  RIVWTAQHFSVIKDT-------FESLCAIVLRPEMSGLVDPDHGISLAAGKEEIRFRNGS 142

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
                                     +  DEA    D    S+L         +  I   
Sbjct: 143 RIFFRARERGALRGV------KKIALLVIDEAQHLSDSAMASMLPTQNRAWNPQT-IYMG 195

Query: 229 NTRRLNG------------------------WFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264
                                          +  D    PL+  +  + +          
Sbjct: 196 TPPGPRDNGEAFTRLRDKARAGRTHSTLYVEFTADRDADPLDRQQWRKANPSYPSHTSDE 255

Query: 265 FHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
               +      D    R E LG + +  ++  I     EEA       
Sbjct: 256 SIANLWENLTGDD--FRREALGIWDEHALSRAIDRRQWEEATIERRRP 301


>gi|320535714|ref|ZP_08035802.1| hypothetical protein HMPREF9554_00523 [Treponema phagedenis F0421]
 gi|320147420|gb|EFW38948.1| hypothetical protein HMPREF9554_00523 [Treponema phagedenis F0421]
          Length = 487

 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/251 (13%), Positives = 63/251 (25%), Gaps = 28/251 (11%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           +  GRG GKT       +  +       +     +  ++++ +    S      P     
Sbjct: 65  LRCGRGWGKTRTAGQTFIEAVKAGY-KRLSLCGATAEEVRDIMINGESGIAQYCPPELGM 123

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
           + +                      K +       S                 ++ DE  
Sbjct: 124 DYKP------------------SQKKIFFKNGAVVSIFYGSEPEKSRGAQSDFIWCDEIH 165

Query: 202 GT--PDIINKSILGFFTELNPNRFWIMTSNT-RRLNGWFYDIFNIPLEDWKRYQI---DT 255
               P+    +++      N     I+TS           +       +           
Sbjct: 166 KWQYPEETFDNLILGLRLGNNP-LCIVTSTPKPTAFAKKLEKMTDEKGNPCVTTTVGSTY 224

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY 315
             V+ +   F   IIS+Y     +A  E+  Q      N      +IE     E    + 
Sbjct: 225 SNVDNLSKKFFSTIISKYKGT-RLALQELFAQILDDNPNALFKKEWIEYNRVDELPLSVN 283

Query: 316 A-PLIMGCDIA 325
              +I   D A
Sbjct: 284 RYRVITSVDPA 294


>gi|269119880|ref|YP_003308057.1| phage terminase, large subunit, PBSX family [Sebaldella termitidis
           ATCC 33386]
 gi|268613758|gb|ACZ08126.1| phage terminase, large subunit, PBSX family [Sebaldella termitidis
           ATCC 33386]
          Length = 416

 Score = 65.0 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/261 (13%), Positives = 74/261 (28%), Gaps = 26/261 (9%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
             ++  +   RG  K+   A  +++ +      + + I      L+++ ++++   +  L
Sbjct: 21  KRYRV-LKGSRGSKKSKTTALWIIYNMMKHKESNTLVIRKVFNSLRDSCYSDLLWAIERL 79

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
              H ++     L             +        I  R   +    T +     +   V
Sbjct: 80  GVSHLWKSTKSPL------------ELVYKPTGQKILFRGLDDPLKLTSITVEKGYLCWV 127

Query: 196 FNDEA-SGTPDIINKSILGFFTELNPNRFW---IMTSNTRRLNGWF-YDIFNIPLEDWKR 250
           + +EA     +     +        P   W     T N      W     F++  ED   
Sbjct: 128 WIEEAYELMSEDAFNKLDLSIRGKLPEHLWKQITFTFNPWNEKHWLKARFFDVEDEDILA 187

Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
                +  E +D    +        +    R+E   ++        I    I E    + 
Sbjct: 188 LTTTYKINEFLDDDDRKVFEKMKRDNPKRYRVEGEAEWG-------IAEGLIFENWEEKE 240

Query: 311 IDDLYAPLIMGCDIAGEGGDK 331
            D        G  ++  G D 
Sbjct: 241 FDYREISKRKGV-VSRFGLDF 260


>gi|256819733|ref|YP_003141012.1| hypothetical protein Coch_0896 [Capnocytophaga ochracea DSM 7271]
 gi|256581316|gb|ACU92451.1| hypothetical protein Coch_0896 [Capnocytophaga ochracea DSM 7271]
          Length = 450

 Score = 65.0 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/274 (9%), Positives = 74/274 (27%), Gaps = 30/274 (10%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GK+ +   ++L       G            L+      + + L+             
Sbjct: 38  GGGKSFIGCSLILADALMYAGTQYFIARKQLNDLRRFTIPSIHEVLNGWG---------- 87

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
            +    W     +    + +    +            +    +      + +E       
Sbjct: 88  -IPQEAWKYNGQDNYFELYNSSRVLLLDCKYLPSDPQYQRLGSMQFTRGWIEEGGEFDYD 146

Query: 207 INKSILGFF-----TELNPNRFWIMTSNTRRLNGWFYDIFNIPLE------DWKRYQIDT 255
              ++          E N     ++T+N  +   + Y  F  P +           Q   
Sbjct: 147 SYSNLKISIGRWKNREYNLKGKLLITANPSK--NFLYKEFYTPYKEGTLNKRRAFIQALP 204

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN--NFIPHNYIEEAMSREAIDD 313
              + +   + + + +         +  +L    + + +  +   ++ I    + + +  
Sbjct: 205 YDNKMLPKEYIQNLENTLRGAE---KQRLLNGLWEYDDDPNSLCDYDKILAIFNNDQLPK 261

Query: 314 LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
                +   DIA  G D  V+   +G  +  ++ 
Sbjct: 262 ESTTYLTA-DIARFGSDLCVIGVWQGWELIEVYT 294


>gi|308173233|ref|YP_003919938.1| PBSX terminase large subunit [Bacillus amyloliquefaciens DSM 7]
 gi|307606097|emb|CBI42468.1| PBSX terminase (large subunit)) [Bacillus amyloliquefaciens DSM 7]
 gi|328553846|gb|AEB24338.1| PBSX terminase (large subunit) [Bacillus amyloliquefaciens TA208]
 gi|328911299|gb|AEB62895.1| PBSX terminase (large subunit) [Bacillus amyloliquefaciens LL3]
          Length = 432

 Score = 65.0 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 73/280 (26%), Gaps = 55/280 (19%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           +  G G  K+   A  ++  +      + + +       +++ +A     +  L   H  
Sbjct: 24  LVGGYGSSKSYHTALKIILKLLC-EKRTALVVREVFDTHRDSTFALFEDIIEELELGHAV 82

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
           +  S  +             +   +    +       + P      H  H   ++ +E S
Sbjct: 83  KAVSSPM------------QLRFANGSRIMFKGM---DNPAKLKSIH--HISLIWIEECS 125

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-------------------- 241
                  K ++G       +   I T+N    + W Y  F                    
Sbjct: 126 EVKYEGFKELIGRLRHPELSLHMICTTNPVGTSNWTYRHFFRDEQKKRFVLDDHTLYEKG 185

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF----- 296
            +   D   +         +   + + + S    D D+ RI   GQF    +  F     
Sbjct: 186 TVVKGDTYYHHSTACDNLFLLKSYIKQLDSLRQYDPDLYRIARKGQFGVNGIRVFPQFQV 245

Query: 297 ------------IPHNYIEEAMSREAIDDLYAPLIMGCDI 324
                       I        M     +   A + +  D 
Sbjct: 246 MEHTEVTERIAAIRRPLFRTGMDFGFEESYNAVIRLAVDP 285


>gi|300775654|ref|ZP_07085515.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
 gi|300505681|gb|EFK36818.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
          Length = 475

 Score = 65.0 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/275 (10%), Positives = 70/275 (25%), Gaps = 30/275 (10%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G  K+   A  ++      P         S  +L+ +      K                
Sbjct: 55  GGAKSWTGAAWLMLSALAYPDTKWFIGRESLKRLRESTLITFFKVAKAY----------- 103

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
            +  + +     +  +   +                 +    +      + +E       
Sbjct: 104 KIPKNIFKYNGQDHYIQFTNGSRIDLLDLRYLPSDQLYERYGSLEYTGGWIEEGGEINFG 163

Query: 207 INKSILGFF-----TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW------KRYQIDT 255
              ++          E        +T N ++   W Y  F  P+++       K  Q   
Sbjct: 164 AYDTLKTRIGRHMNEEYGLKPKIFVTCNPKK--NWMYSYFYKPMKEGLLKLKQKFIQAFV 221

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE--AMSREAIDD 313
           +    I + + E + S    D       + G +  +  +N       +    + +    +
Sbjct: 222 QENPFITTDYIEQLESTT--DKAKRERLLKGNW--EYDDNPYKLTIYDRILDLWKNDHIE 277

Query: 314 LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348
                 +  D+A  G D   V       +  + ++
Sbjct: 278 KKGRKYITADVARFGSDLATVGVWEDWDLIEVHEF 312


>gi|94317773|gb|ABF15050.1| putative prophage terminase large subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium]
          Length = 214

 Score = 65.0 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/204 (10%), Positives = 60/204 (29%), Gaps = 21/204 (10%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GR   K+   A   +  ++ +  +   C    + +++ +++  +   +     RH F +
Sbjct: 30  GGRSSSKSWDAAGFAI-FLANKYSLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRI 88

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
            +  +                 +    +    +     +            ++ +EA   
Sbjct: 89  LNNKIINRV-------------TGSEFVFYGLWR----NIEEIKSLEGIDVLWLEEAHAL 131

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRYQIDTRTVEGID 262
            +   K +     +     ++I   N   +  + +  F   P ED    +I+      + 
Sbjct: 132 TEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEDTLIRKINYDENPFLS 189

Query: 263 SGFHEGIISRYGLDSDVARIEILG 286
               + I +    D +       G
Sbjct: 190 DTMLKVIDAARHRDPEGFVHVYEG 213


>gi|163758712|ref|ZP_02165799.1| prophage MuMc02, terminase, ATPase subunit, putative [Hoeflea
           phototrophica DFL-43]
 gi|162284002|gb|EDQ34286.1| prophage MuMc02, terminase, ATPase subunit, putative [Hoeflea
           phototrophica DFL-43]
          Length = 460

 Score = 65.0 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 84/278 (30%), Gaps = 35/278 (12%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMML----WLISTRPGMSIICIANSETQLKNTLWAEVS 129
           +P  FK  + A R  GKT      ++               + ++  E Q +  +   V 
Sbjct: 18  DPARFKIGMFA-RQTGKTFTTTLEVVDDCFAAALASRRQRWVILSRGERQAREAMNEGVK 76

Query: 130 ---KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
              K   +    H ++ Q           +L   S          T R +S         
Sbjct: 77  LHAKAYDLAIEAHEYDWQGQEGSYRAMEVDLPHGSKITALPANPDTARGFSAN------- 129

Query: 187 PHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244
                   VF DE +   D   I K++    +     R    TS        FY++    
Sbjct: 130 --------VFLDEFAFHKDSGAIWKALFPVISAGWKLRI---TSTPNGKGNKFYELMTAE 178

Query: 245 LEDWKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI- 302
            + W ++++D  R V        E +      D D    E   ++  +    ++ +  I 
Sbjct: 179 GDRWSKHEVDIYRAVADGLPRDIEELREGLA-DEDAWAQEYELKWLDEAS-AWLSYELIS 236

Query: 303 --EEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
             E+  + +       P  +G DI     D  V+    
Sbjct: 237 SVEDERAGDPYLYQGGPCYVGRDIGRR-NDLHVIWVWE 273


>gi|210632155|ref|ZP_03297229.1| hypothetical protein COLSTE_01123 [Collinsella stercoris DSM 13279]
 gi|210159703|gb|EEA90674.1| hypothetical protein COLSTE_01123 [Collinsella stercoris DSM 13279]
          Length = 561

 Score = 65.0 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/291 (12%), Positives = 77/291 (26%), Gaps = 21/291 (7%)

Query: 43  KPLEHFSQPHRWQLEFMEAVD-VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101
            P E   Q   +  +F   +       ++  +     +     GRG  K++  +  ++  
Sbjct: 122 LPEERAEQRGEFTRDFALLIGRDFFRPHMLMATGAQTEFWCKGGRGSLKSSWASIELVRH 181

Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
           I   PG     +   +  L++ ++A+V   +  L     +EM   +L             
Sbjct: 182 IEDNPGEHAAAVMKRKNSLRDAVYAQVVWAIHQLELDDEYEMPVSTLKIR---------- 231

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNP 220
               +             +      P       ++ +E          +++         
Sbjct: 232 -KKSTGQVIFFAGCDDPHKSKGLKPPFGF-IGFLWFEECDQFKGMSELRTVRQSAARGGE 289

Query: 221 NRFWIMTSNTRRLNGWFYDIFNIPLEDW--KRYQIDTRTVE--GIDSGFHEGIISRYGLD 276
               + T N  R    + +       D   + +           + + F          D
Sbjct: 290 RAIVVYTYNPPRTRDNWANKEADRRRDAGQEVFDSCYTDAPPEWLGAQFIADAEDLRQTD 349

Query: 277 SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE 327
               R E LG+ P            +E     +A    +  +  G D    
Sbjct: 350 EQAYRHEYLGE-PVGYGGQIFDR--VEFREVTDAEIASFERVHAGQDFGWF 397


>gi|225419807|ref|ZP_03762110.1| hypothetical protein CLOSTASPAR_06147 [Clostridium asparagiforme
           DSM 15981]
 gi|225041548|gb|EEG51794.1| hypothetical protein CLOSTASPAR_06147 [Clostridium asparagiforme
           DSM 15981]
          Length = 686

 Score = 65.0 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 70/245 (28%), Gaps = 19/245 (7%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
             GRG  K++  +  ++ LI +   M  + +      L+++++ ++   +  L     F 
Sbjct: 306 PGGRGSTKSSFISMEVIDLIMSHEDMHAVVMRQVADTLRSSVYQQILWAIEALNLTDEFR 365

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-S 201
                +             +   S    I  R   +      V     +   ++ +E   
Sbjct: 366 ATVSPM------------EITRISTGQKIYFRGADDPGKVKSVKVPFGYIGILWLEELDQ 413

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRL-NGWFYDIFNIPLEDWKRYQIDTRTVE- 259
                  + I           +   + N  +  + W      IP +     +     V  
Sbjct: 414 FVGPESVRKIEQSVIRGGDVAYIFKSFNPPKSASNWANKYIKIPKDSRLVTESTYLDVPQ 473

Query: 260 -GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
             +   F +        +SD    E +G        +   +  I E    +     +  +
Sbjct: 474 KWLGKPFLDEAEFLKETNSDAYENEYMGV-ANGSGGSVFDNVKIRE--ITDDEIAQFDHV 530

Query: 319 IMGCD 323
           + G D
Sbjct: 531 LNGVD 535


>gi|262193957|ref|YP_003265166.1| hypothetical protein Hoch_0641 [Haliangium ochraceum DSM 14365]
 gi|262077304|gb|ACY13273.1| protein of unknown function DUF264 [Haliangium ochraceum DSM 14365]
          Length = 478

 Score = 64.6 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/367 (11%), Positives = 95/367 (25%), Gaps = 86/367 (23%)

Query: 9   QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQP---HRWQLEFMEAVDVH 65
           +K EQEL +    A               WG      +   +P    R+Q+ F+      
Sbjct: 7   KKNEQELSD--WLAN-------------EWGFLAGLAKFDDEPVTLERYQMAFLRN---- 47

Query: 66  CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW 125
                     + F+  ++  R +G + + A   L     R   + + ++ +    K  + 
Sbjct: 48  ---------RSRFR-WVTKSRQVGFSFVFALEALARCHLRDKHTAVFVSYNLEDAKEKVL 97

Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185
               +    LP  +   +             +++    +  +      R        +  
Sbjct: 98  -IARQIHEELPLAYQKRL-------------VVDSKTELAFESNAANKRLSRIISAPS-K 142

Query: 186 GPHNTHGMAVFNDEASG--TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243
            P    G  V+ DE +       +           +        S      G F++I   
Sbjct: 143 APRGKKGD-VYLDELAHYVLDREVYTGSTALILRSHGQLSSC--STPLGRRGIFWEISTE 199

Query: 244 PLEDWKRYQID---TRTVEGIDSGFHEGIISRYGLDSDV--------------------- 279
            L  +  +  D                 +     + ++                      
Sbjct: 200 ELRKYPHHTRDEVPWWRCRFFCIDIDRAMREAPHMPTEERVAAFGTQAIAQQLDSLALED 259

Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREA--------IDDLYAPLIMGCDIAGEGGDK 331
            + E    F  +   ++ P+  I    S +         + +    ++ G D+     D 
Sbjct: 260 FQQEFECSFVDESY-SYYPYELILPCTSEDLVLAGDFTDLPEPEGRIVAGFDVGRT-RDH 317

Query: 332 TVVVFRR 338
           + +    
Sbjct: 318 SELAVFE 324


>gi|291335056|gb|ADD94686.1| hypothetical protein [uncultured phage MedDCM-OCT-S08-C620]
          Length = 233

 Score = 64.6 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 53/172 (30%), Gaps = 7/172 (4%)

Query: 183 TFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTE-LNPNRFWIMTSNTRRLNGWFYDI 240
           T+      +  AV  DEA         +++        + N      + T   + W +D 
Sbjct: 7   TYQRLRGQNLCAVGFDEADTVNKRDAEQAMNMALARLRSGNVQQFYATTTPEGHSWAFDT 66

Query: 241 FN-IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299
           F     ED +  +  T     +  GF + ++  Y     + +  + G F           
Sbjct: 67  FEKNAKEDTRLIKARTADNPYLPDGFIDSLLENY--PPQLIQAYLNGNFCNLTTGQVYDK 124

Query: 300 NYIEEAM-SREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
                 +   +   D   PL +G D    G    V+    GN    I + + 
Sbjct: 125 FNRNTHVLQNDPYVDDNEPLRIGIDF-NIGNMNAVIGVAVGNKFMVIDEIAK 175


>gi|217961103|ref|YP_002339671.1| hypothetical protein BCAH187_A3729 [Bacillus cereus AH187]
 gi|229140322|ref|ZP_04268877.1| DNA packaging protein Gp17 [Bacillus cereus BDRD-ST26]
 gi|217067223|gb|ACJ81473.1| conserved hypothetical protein [Bacillus cereus AH187]
 gi|228642883|gb|EEK99159.1| DNA packaging protein Gp17 [Bacillus cereus BDRD-ST26]
          Length = 525

 Score = 64.6 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 86/293 (29%), Gaps = 43/293 (14%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           M + ++T +KLE      L++ + VL  KNFV      G    P     Q    Q +F+ 
Sbjct: 1   MSKKLTTKEKLE------LINNDPVLWLKNFVKITTNTGDY-IPFVVNDQ----QKKFIN 49

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +               F   I+  R IG +T++  + LW+   RP  + + ++  +   
Sbjct: 50  EMG-------------RFNV-IAKARQIGFSTMSLALCLWMAMNRPRTNYMIVSYKQES- 94

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
             +L+ ++      LPH                  +     +  D+              
Sbjct: 95  STSLFDKLKMMYDDLPHDK---------FKFPKDTQNNRNQLKFDNGSSITLAT------ 139

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
                    T    +   E +   +  +  +             ++   T      +  +
Sbjct: 140 AGGKDVGRGTTYEYILLSEFAFYENQDSILLSAEQALAKSKTSKLVIETTSNGFNSYQTL 199

Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293
           F    +   +Y+          S + +     Y       +    G+   ++ 
Sbjct: 200 FMNAYKGESKYKAFFF--PFYSSSYAKQFKDDYDEAEIWYKENNKGKRLTKDD 250


>gi|294789839|ref|ZP_06755067.1| phage terminase, large subunit, PBSX family [Simonsiella muelleri
           ATCC 29453]
 gi|294482221|gb|EFG29920.1| phage terminase, large subunit, PBSX family [Simonsiella muelleri
           ATCC 29453]
          Length = 413

 Score = 64.6 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/247 (10%), Positives = 66/247 (26%), Gaps = 28/247 (11%)

Query: 90  KTTLNA-WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
           K+   A  + +W  +    + I+C    +  +K +  AE+   ++           S + 
Sbjct: 42  KSFNVAKMLAIWGYAET--LRILCTREFQNSIKESFHAELKAAIA-----------SEAF 88

Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208
             + +   +        ++        +   R +T       +      +EA    +   
Sbjct: 89  LENAYDVGVDFIRGKNGTE------FLFKGLRNNTQSIKSLANIDICVIEEAEDISESAW 142

Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL-EDWKRYQIDTRTVEGIDSGFHE 267
           + +            W++  N ++        F           +I+            E
Sbjct: 143 EVLEPTIRAPKSE-IWVIW-NPKQRGSATDTRFRQNTPPRSCIVEINHSDNPFFPDVLDE 200

Query: 268 GIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAG 326
               +  + D         G + +Q         Y     + ++  +       G D  G
Sbjct: 201 QRKYQQKVLDPARYAWIWEGAYYEQSDAQVFAGKYAVREFTPQSDWNGA---YFGLDF-G 256

Query: 327 EGGDKTV 333
              D T 
Sbjct: 257 FSQDPTA 263


>gi|169796738|ref|YP_001714531.1| putative phage terminase [Acinetobacter baumannii AYE]
 gi|169149665|emb|CAM87555.1| conserved hypothetical protein; putative phage terminase
           [Acinetobacter baumannii AYE]
          Length = 437

 Score = 64.6 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 74/263 (28%), Gaps = 33/263 (12%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
               F+  + AG G GKT +    +       P + +   A +  Q+++  +  + +   
Sbjct: 25  MEKKFRAFV-AGFGSGKTWVGCSSLCNKAWEFPKVPLGYFAPTYPQIRDIFFPTIEEV-- 81

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
                  F+             E  ++      + Y  T    S E+P T          
Sbjct: 82  ------AFDWG-----LKTKVYETNKEVDIYYGRQYRTTIICRSMEKPAT---IVGFKIG 127

Query: 194 AVFNDE----ASGTPDIINKSILGFFTELNPNRF-WIMTSNTRRLNGWFYDIF------- 241
               DE    A        + I+        +    I  + T     + Y+ F       
Sbjct: 128 HALIDELDVMAKVKAQQAWRKIIARMRYKQASLLNGIDVATTPEGFKFTYEQFVKEANKS 187

Query: 242 NIPLEDWKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
               + +   Q  T   E  +   +   +   Y     +    + GQF         P +
Sbjct: 188 EAKRKLYGMIQASTYDNEANLPDDYISSLYESY--PPQLISAYLRGQFVNLTSGAVYP-D 244

Query: 301 YIEEAMSREAIDDLYAPLIMGCD 323
           +       +       PL++G D
Sbjct: 245 FDRVLNHTDEEIKQGEPLLIGMD 267


>gi|194434522|ref|ZP_03066781.1| conserved hypothetical protein [Shigella dysenteriae 1012]
 gi|194417234|gb|EDX33344.1| conserved hypothetical protein [Shigella dysenteriae 1012]
 gi|332093143|gb|EGI98204.1| hypothetical protein SD15574_1959 [Shigella dysenteriae 155-74]
          Length = 442

 Score = 64.6 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 71/259 (27%), Gaps = 29/259 (11%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL---KNTLWAEVSKWLSMLPH 137
           A+  GR  GKT +   +     + +          +  QL   +  ++    +    +  
Sbjct: 28  AVCCGRRWGKTVMLVNIATSFATRK------FAVPTTGQLIAGRVGIFTAQYRQYQEIWD 81

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH-NTHGMAVF 196
                        S     L+      + +              D            AV 
Sbjct: 82  E-----------ISAVLQPLILSQSKNEKRIILRNGGRIDFWVTDNNKLAGCGRKYHAVL 130

Query: 197 NDEASG------TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250
            DEA+         +I  ++I     +     +   T N    + +FY I +     +  
Sbjct: 131 IDEAAFTKSPEMLEEIWPRAIRPTLVDYRGCAWVFSTPNGIDESNFFYAICHDESLGFVM 190

Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
           +   T +   I     E    +   D  V + E L +F     +  +  + +        
Sbjct: 191 HHAPTSSNPYIPKEELEETEKKS--DPRVWQQEYLAEFVDWSKDALLDVDKLLVDGQPIE 248

Query: 311 IDDLYAPLIMGCDIAGEGG 329
           +      +    D A +GG
Sbjct: 249 MPPYCDMIFAVMDTALKGG 267


>gi|295096346|emb|CBK85436.1| Terminase-like family [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 435

 Score = 64.6 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 89/280 (31%), Gaps = 33/280 (11%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           A  AG G GKT +    +   +   P ++    A +  Q+++  +  + +          
Sbjct: 23  AYVAGFGSGKTWVGCGGICKGMWEHPKINQGYFAPTYPQIRDIFYPTIEEV--------A 74

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE- 199
           F+     +       E  ++    + + Y  T    S E+P +              DE 
Sbjct: 75  FDWGLSVI-----INEGNKEVHFYEGRRYRGTTICRSMEKPGS---IVGFKIGNAMVDEL 126

Query: 200 ---ASGTPDIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIFNIPLED-------W 248
              A+       + I+     +++  R  I  + T     + Y  F   + +       +
Sbjct: 127 DVMAAAKAQQAWRKIIARMRYKVDGLRNGIDVTTTPEGFKFVYQQFVKAVREKPELSALY 186

Query: 249 KRYQIDTRTV-EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
              Q  T    + +   +   ++S Y    ++ +  + G+F            +  +  +
Sbjct: 187 GLIQASTFDNAKNLPPDYISSLLSSY--PDELIQAYLRGKFTNLNSGTIYH-TFNRKLNN 243

Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
                    PL +G D    G    +V  +R  +   + +
Sbjct: 244 CSDEIQDGDPLFIGMDF-NVGKMAAIVHVKRNGLPRAVRE 282


>gi|212712878|ref|ZP_03321006.1| hypothetical protein PROVALCAL_03975 [Providencia alcalifaciens DSM
           30120]
 gi|212684570|gb|EEB44098.1| hypothetical protein PROVALCAL_03975 [Providencia alcalifaciens DSM
           30120]
          Length = 436

 Score = 64.6 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 90/287 (31%), Gaps = 34/287 (11%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
            P  FK A  AG G GKT +    +   +   P ++    A +  Q+++  +  + +   
Sbjct: 17  MPHKFK-AYVAGFGSGKTWVGCGGICKGMWEFPKINQGYFAPTYPQIRDIFYPTIEEV-- 73

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
                      +L         E  ++    + + Y  T    S E+P+T          
Sbjct: 74  -----------ALDWGLKVNIVESNKEVHFYEGRRYRGTVICRSMEKPET---IVGFKIG 119

Query: 194 AVFNDEA----SGTPDIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIFNIPLED- 247
               DE     S       + I+      +   R  I  + T     + Y  F   + D 
Sbjct: 120 NALIDELDVMKSDKAQKAWRKIIARMRYNVAGLRNGIDVTTTPEGFKFVYQQFVKAVRDK 179

Query: 248 ------WKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
                 +   Q  T   E  + + +   ++S Y    ++ +  + GQF            
Sbjct: 180 PELSTLYGIVQASTFDNEKNLPADYIPSLMSSY--PPELIKAYLKGQFTNLTSGTIYH-T 236

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
           +  +  + E  +     L +G D    G    +V   R  +   + +
Sbjct: 237 FDRKLNNSEEEEQPGETLYIGMDF-NVGKMAGIVHVLRLGLPHAVTE 282


>gi|239504148|ref|ZP_04663458.1| putative phage terminase [Acinetobacter baumannii AB900]
          Length = 413

 Score = 64.6 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 74/263 (28%), Gaps = 33/263 (12%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
               F+  + AG G GKT +    +       P + +   A +  Q+++  +  + +   
Sbjct: 1   MEKKFRAFV-AGFGSGKTWVGCSSLCNKAWEFPKVPLGYFAPTYPQIRDIFFPTIEEV-- 57

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
                  F+             E  ++      + Y  T    S E+P T          
Sbjct: 58  ------AFDWG-----LKTKVYETNKEVDIYYGRQYRTTIICRSMEKPAT---IVGFKIG 103

Query: 194 AVFNDE----ASGTPDIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIF------- 241
               DE    A        + I+     +       I  + T     + Y+ F       
Sbjct: 104 HALIDELDVMAMTKAQQAWRKIIARMRFKQAGLLNGIDVATTPEGFKFTYEQFVKEANKS 163

Query: 242 NIPLEDWKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
               + +   Q  T   E  +   +   +   Y     +    + GQF         P +
Sbjct: 164 EAKRKLYGMIQASTYDNEANLPDDYISSLYESY--PPQLISAYLRGQFVNLTSGAVYP-D 220

Query: 301 YIEEAMSREAIDDLYAPLIMGCD 323
           +       +       PL++G D
Sbjct: 221 FDRVLNHTDEEIKKGEPLLIGMD 243


>gi|238765410|ref|ZP_04626332.1| hypothetical protein ykris0001_46080 [Yersinia kristensenii ATCC
           33638]
 gi|238696351|gb|EEP89146.1| hypothetical protein ykris0001_46080 [Yersinia kristensenii ATCC
           33638]
          Length = 381

 Score = 64.6 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 52/182 (28%), Gaps = 9/182 (4%)

Query: 155 AELLEQSMGIDSKHYTITCRTYSEERPDTFVGP-HNTHGMAVFNDEASG------TPDII 207
             L+      + +              D            AV  DEA+         +I 
Sbjct: 28  HPLIASQSKNEKRIILRNGGRIDFWVTDNNKLAGRGRKYHAVLIDEAAFTKSPEMLEEIW 87

Query: 208 NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267
            ++I     +     +   T N    + +FY I +     + ++   T +   I     E
Sbjct: 88  PRAIRPTLVDYRGRAWVFSTPNGIDESNFFYAICHDESLGFVKHHAPTSSNPFIPKDELE 147

Query: 268 GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE 327
               +   D  V + E L +F     +  +  + +        +      +    D A +
Sbjct: 148 ETERKS--DPRVWQQEYLAEFVDWSKDALLDIDKLLVDGQPVGVPKHCDVVFAVMDTALK 205

Query: 328 GG 329
           GG
Sbjct: 206 GG 207


>gi|319949764|ref|ZP_08023789.1| phage terminase [Dietzia cinnamea P4]
 gi|319436564|gb|EFV91659.1| phage terminase [Dietzia cinnamea P4]
          Length = 478

 Score = 64.6 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/311 (13%), Positives = 77/311 (24%), Gaps = 58/311 (18%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
            +WQ + +  +       V    P          RG GK+T+ A + L  +      G  
Sbjct: 39  RQWQRDLVGTLLDEERPLVVWCLP----------RGQGKSTITAALALHHVFMSGIEGAR 88

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
            + +A  E      L                    S +        EL  ++     +  
Sbjct: 89  AVIVAQDERSATRML--------------------STAARMVALNEELDSRAWVYKDRIT 128

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL-GFFTELNPNRFWIMTS 228
                ++    P                DE         +S+L             I T 
Sbjct: 129 IPGTDSHIVALPGEAARIEGEAASLAICDEVGIVRRDAFESLLHSTGKVEGSKLLAIGTP 188

Query: 229 NTR--RLNGWFYDIFNIPLEDWK--RYQIDTRTVEGIDSGFHEGIIS------------- 271
           +    R      D+      +      ++   +     +   E   +             
Sbjct: 189 SPPSWRETSPLLDLVLDGRSNPDNPNLRVVEYSAPVGCAVDDEEAWAVANPGLDDLVQRS 248

Query: 272 ------RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
                          R   LGQ+ +Q+   F+P       +S          +++  D +
Sbjct: 249 ALRAALPPRSRESEFRRARLGQWVEQDDAAFLPPGLW-PKLSTGVGIPDGQRVVLALDGS 307

Query: 326 GEGGDKTVVVF 336
              GD T +V 
Sbjct: 308 -FNGDATALVV 317


>gi|153953117|ref|YP_001393882.1| hypothetical protein CKL_0480 [Clostridium kluyveri DSM 555]
 gi|219853766|ref|YP_002470888.1| hypothetical protein CKR_0423 [Clostridium kluyveri NBRC 12016]
 gi|146345998|gb|EDK32534.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
 gi|219567490|dbj|BAH05474.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 521

 Score = 64.2 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/321 (10%), Positives = 93/321 (28%), Gaps = 52/321 (16%)

Query: 8   DQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCH 67
            ++  Q+L  +      +   + F+        K   L  F      Q +F+E +  +  
Sbjct: 4   SKETAQKLKYLWEDGHEIEWIETFIKIV----NKDTKLVPFI-LTPEQKKFVEELVKYG- 57

Query: 68  SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127
                         +   R +G + +   + +      P  + + +++ + +  N ++ +
Sbjct: 58  -------------IVLKSRQLGISVIIIALSIRQCIVYPNSNCLLVSH-DQKSCNAIFDK 103

Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187
           + +  + LP           +           Q + + +          S          
Sbjct: 104 LKQQFNSLP-----------MWLKPKENANNRQEIKMANGSKI------SAVCAGNKDVG 146

Query: 188 HNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL 245
                  V   E +    P+    SI             ++  +T     +FY+++    
Sbjct: 147 RGDTLHLVHLSEFAFWKMPEKQLNSITQALAPDGK----LIIESTANGLNYFYNLYFQAK 202

Query: 246 ED---WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302
            +   +K +  +      +    +E  +  Y   ++   +++  +   +E         +
Sbjct: 203 NNENSYKSFFFNWIDGSTLFEKDYENSVEIYKAKNNNELLKVE-ELNDEEKELVNLGATM 261

Query: 303 EEAMSREAIDDLYAPLIMGCD 323
           E+ M R            G D
Sbjct: 262 EQLMWRRLKVASG-----GLD 277


>gi|332799002|ref|YP_004460501.1| phage terminase, large subunit, PBSX family [Tepidanaerobacter sp.
           Re1]
 gi|332696737|gb|AEE91194.1| phage terminase, large subunit, PBSX family [Tepidanaerobacter sp.
           Re1]
          Length = 417

 Score = 64.2 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/261 (12%), Positives = 69/261 (26%), Gaps = 16/261 (6%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           +  GRG  K++  +  ++  +           A +  ++K+TL   V + L+        
Sbjct: 30  LKGGRGSTKSSFASLEIILGMMRDAEQREFTNAVALRKVKDTLKDSVFEQLAWAIEILGV 89

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA- 200
                      W+    +  +        I  R   + +          +   ++ +E  
Sbjct: 90  GH--------LWHIPQSKLEITYIPTGQKILFRGADKPKKIKSTKVKKGYIKYIWFEELD 141

Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN-GWFYDIFNIPLEDWKRYQIDTRTVE 259
                   + I               T N  + +  W       P    K +  D R+V 
Sbjct: 142 EFYGPEELRIINQSLMRGGEIFVVFYTYNPPKSSRSWVNQEAKTPKPGRKVHHSDYRSVP 201

Query: 260 --GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317
              + + F          +    R E +G+     +  F      E     +     +  
Sbjct: 202 EHWLGNVFIADAEHLKKTNEIAYRHEYMGEEVGTGLEVFTNVTLRE---ITDEEIKTFDR 258

Query: 318 LIMGCDIAGEGGDKTVVVFRR 338
           +  G D  G   D        
Sbjct: 259 IKQGLDF-GYAVDPVAFEKMH 278


>gi|293608730|ref|ZP_06691033.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829303|gb|EFF87665.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 430

 Score = 64.2 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 74/263 (28%), Gaps = 33/263 (12%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
               F+  + AG G GKT +    +       P + +   A +  Q+++  +  + +   
Sbjct: 18  MEKKFRAFV-AGFGSGKTWVGCSSLCNKAWEFPKVPLGYFAPTYPQIRDIFFPTIEEV-- 74

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
                  F+             E  ++      + Y  T    S E+P T          
Sbjct: 75  ------AFDWG-----LKTKVYETNKEVDIYYGRQYRTTIICRSMEKPAT---IVGFKIG 120

Query: 194 AVFNDE----ASGTPDIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIF------- 241
               DE    A        + I+     +       I  + T     + Y+ F       
Sbjct: 121 HALIDELDVMAKVKAQQAWRKIIARMRYKQAGLLNGIDVATTPEGFKFTYEQFVKEANKS 180

Query: 242 NIPLEDWKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
               + +   Q  T   E  +   +   +   Y     +    + GQF         P +
Sbjct: 181 EAKRKLYGMIQASTYDNEANLPDDYISSLYESY--PPQLISAYLRGQFVNLTSGAVYP-D 237

Query: 301 YIEEAMSREAIDDLYAPLIMGCD 323
           +       +       PL++G D
Sbjct: 238 FDRVLNHTDEEIKKGEPLLIGMD 260


>gi|260556008|ref|ZP_05828228.1| PBSX family phage terminase, large subunit [Acinetobacter baumannii
           ATCC 19606]
 gi|260410919|gb|EEX04217.1| PBSX family phage terminase, large subunit [Acinetobacter baumannii
           ATCC 19606]
          Length = 435

 Score = 64.2 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 74/263 (28%), Gaps = 33/263 (12%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
               F+  + AG G GKT +    +       P + +   A +  Q+++  +  + +   
Sbjct: 23  MEKKFRAFV-AGFGSGKTWVGCSSLCNKAWEFPKVPLGYFAPTYPQIRDIFFPTIEEV-- 79

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
                  F+             E  ++      + Y  T    S E+P T          
Sbjct: 80  ------AFDWG-----LKTKVYETNKEVDIYYGRQYRTTIICRSMEKPAT---IVGFKIG 125

Query: 194 AVFNDE----ASGTPDIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIF------- 241
               DE    A        + I+     +       I  + T     + Y+ F       
Sbjct: 126 HALIDELDVMAKVKAQQAWRKIIARMRYKQAGLLNGIDVATTPEGFKFTYEQFVKEANKS 185

Query: 242 NIPLEDWKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
               + +   Q  T   E  +   +   +   Y     +    + GQF         P +
Sbjct: 186 EAKRKLYGMIQASTYDNEANLPDDYISSLYESY--PPQLISAYLRGQFVNLTSGAVYP-D 242

Query: 301 YIEEAMSREAIDDLYAPLIMGCD 323
           +       +       PL++G D
Sbjct: 243 FDRVLNHTDEEIKKGEPLLIGMD 265


>gi|215484220|ref|YP_002326447.1| Terminase-like family protein [Acinetobacter baumannii AB307-0294]
 gi|213985731|gb|ACJ56030.1| Terminase-like family protein [Acinetobacter baumannii AB307-0294]
          Length = 413

 Score = 64.2 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 74/263 (28%), Gaps = 33/263 (12%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
               F+  + AG G GKT +    +       P + +   A +  Q+++  +  + +   
Sbjct: 1   MEKKFRAFV-AGFGSGKTWVGCSSLCNKAWEFPKVPLGYFAPTYPQIRDIFFPTIEEV-- 57

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
                  F+             E  ++      + Y  T    S E+P T          
Sbjct: 58  ------AFDWG-----LKTKVYETNKEVDIYYGRQYRTTIICRSMEKPAT---IVGFKIG 103

Query: 194 AVFNDE----ASGTPDIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIF------- 241
               DE    A        + I+     +       I  + T     + Y+ F       
Sbjct: 104 HALIDELDVMAKVKAQQAWRKIIARMRYKQAGLLNGIDVATTPEGFKFTYEQFVKEANKS 163

Query: 242 NIPLEDWKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
               + +   Q  T   E  +   +   +   Y     +    + GQF         P +
Sbjct: 164 EAKRKLYGMIQASTYDNEANLPDDYISSLYESY--PPQLISAYLRGQFVNLTSGAVYP-D 220

Query: 301 YIEEAMSREAIDDLYAPLIMGCD 323
           +       +       PL++G D
Sbjct: 221 FDRVLNHTDEEIKKGEPLLIGMD 243


>gi|184157353|ref|YP_001845692.1| putative phage terminase [Acinetobacter baumannii ACICU]
 gi|301345227|ref|ZP_07225968.1| putative phage terminase [Acinetobacter baumannii AB056]
 gi|301595737|ref|ZP_07240745.1| putative phage terminase [Acinetobacter baumannii AB059]
 gi|332851175|ref|ZP_08433263.1| phage terminase, large subunit, PBSX family [Acinetobacter
           baumannii 6013150]
 gi|332869110|ref|ZP_08438600.1| phage terminase, large subunit, PBSX family [Acinetobacter
           baumannii 6013113]
 gi|332875310|ref|ZP_08443140.1| phage terminase, large subunit, PBSX family [Acinetobacter
           baumannii 6014059]
 gi|183208947|gb|ACC56345.1| putative phage terminase [Acinetobacter baumannii ACICU]
 gi|332730195|gb|EGJ61521.1| phage terminase, large subunit, PBSX family [Acinetobacter
           baumannii 6013150]
 gi|332732895|gb|EGJ64103.1| phage terminase, large subunit, PBSX family [Acinetobacter
           baumannii 6013113]
 gi|332736478|gb|EGJ67475.1| phage terminase, large subunit, PBSX family [Acinetobacter
           baumannii 6014059]
          Length = 413

 Score = 64.2 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 74/263 (28%), Gaps = 33/263 (12%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
               F+  + AG G GKT +    +       P + +   A +  Q+++  +  + +   
Sbjct: 1   MEKKFRAFV-AGFGSGKTWVGCSSLCNKAWEFPKVPLGYFAPTYPQIRDIFFPTIEEV-- 57

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
                  F+             E  ++      + Y  T    S E+P T          
Sbjct: 58  ------AFDWG-----LKTKVYETNKEVDIYYGRQYRTTIICRSMEKPAT---IVGFKIG 103

Query: 194 AVFNDE----ASGTPDIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIF------- 241
               DE    A        + I+     +       I  + T     + Y+ F       
Sbjct: 104 HALIDELDVMAKVKAQQAWRKIIARMRYKQAGLLNGIDVATTPEGFKFTYEQFVKEANKS 163

Query: 242 NIPLEDWKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
               + +   Q  T   E  +   +   +   Y     +    + GQF         P +
Sbjct: 164 EAKRKLYGMIQASTYDNEANLPDDYISSLYESY--PPQLISAYLRGQFVNLTSGAVYP-D 220

Query: 301 YIEEAMSREAIDDLYAPLIMGCD 323
           +       +       PL++G D
Sbjct: 221 FDRVLNHTDEEIKKGEPLLIGMD 243


>gi|255103207|ref|ZP_05332184.1| hypothetical protein CdifQCD-6_20513 [Clostridium difficile
           QCD-63q42]
          Length = 582

 Score = 64.2 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/253 (9%), Positives = 56/253 (22%), Gaps = 45/253 (17%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           A RG+GK+ L       +   +PG  ++  A  + Q K          ++       +  
Sbjct: 68  ASRGLGKSWLLGVFCCVIAVLKPGTCVLIAAKRKKQAK--------LLITSKILGDLYLK 119

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
                         ++       +           E   +           +  DE    
Sbjct: 120 SDT-------LKREIKSFQVNAQEVSIDFWNGSRIEAVVSNDDARGYRANVLIVDEYRMV 172

Query: 204 PDII-NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR------ 256
            +   N  ++ F T      +     N +       +        W       +      
Sbjct: 173 DEGTVNDVLVPFLTNPRQPGY---LQNPKYRYMQEENKEIYLSSGWYSQHWSYKKFMETV 229

Query: 257 --------------------TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
                                   +        + +  +      +E  G F  +  + F
Sbjct: 230 KGMLSGEDMFACSIPFTCSLEHGLLTKKRILKEMKKESMSDASFMMEYCGVFYNESDDAF 289

Query: 297 IPHNYIEEAMSRE 309
              +++      E
Sbjct: 290 FKSSWVNPCRVLE 302


>gi|23455748|ref|NP_695057.1| putative terminase [Lactococcus phage r1t]
 gi|1353546|gb|AAB18704.1| ORF29 [Lactococcus phage r1t]
          Length = 469

 Score = 64.2 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/325 (13%), Positives = 84/325 (25%), Gaps = 52/325 (16%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ   ++ V       +       +       R  GKT +   + LW +    G+SI+ 
Sbjct: 41  PWQKNLLKEVMAIDEDGLWTHQKFGYSI----PRRNGKTEIVYILELWSLVQ--GLSILH 94

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            A+  +    + + ++ K+L    +    + +S+               +          
Sbjct: 95  TAHRISTSH-SSYEKLKKYLEDSGYVEGEDFKSIKAKGQ------ERLELIESGGVIQFR 147

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232
            RT S                 +  DEA         ++    T+ +     IM      
Sbjct: 148 TRTSSGGL--------GEGFDILVIDEAQEYTTEQESALKYTVTDSDNPMT-IMCGTPPT 198

Query: 233 L---------------------NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271
                                 +GW         +                      I +
Sbjct: 199 PVSSGTVFTNYRDNTIAGKAKYSGWAEWSVEDVKDIHDVEAWYNSNPSMGYHLNERKIEA 258

Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDK 331
             G D     ++ LG +P+    + I       A+    +  +   L +G      G D 
Sbjct: 259 ELGEDKLDHNVQRLGYWPKYNQKSVISEQEWN-ALKVNRLPVIKGKLFVGI---KYGNDG 314

Query: 332 TVVVFRRGNIIEHIFDWSAKLIQET 356
             V          +   S K+  ET
Sbjct: 315 ANVAM-----SIAVKTLSGKVFVET 334


>gi|256811476|ref|YP_003128845.1| hypothetical protein Mefer_1542 [Methanocaldococcus fervens AG86]
 gi|256794676|gb|ACV25345.1| hypothetical protein Mefer_1542 [Methanocaldococcus fervens AG86]
          Length = 531

 Score = 64.2 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/277 (11%), Positives = 71/277 (25%), Gaps = 44/277 (15%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST-------RPG 107
           Q E ++ +  +  S             I AG+G GK  + + +  +++            
Sbjct: 74  QKEILKGMAEYPTS------------IILAGKGSGKDFMVSLLFNYMLMKATLKENLYSR 121

Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
           ++ + IA +        + E   W            +            L + S+ I   
Sbjct: 122 VNFVNIAPNMELANKVFFKEFKHWFKKCLLWQAVGFEEEKNTGKAP-IRLTKTSVSIGDN 180

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL----------GFFTE 217
              ++  ++S             + +    DE     D    +                 
Sbjct: 181 IELVSGHSHST-------SFEGMNVLCAVIDE---ISDENFYNAEKLFYQLLSSIKTRFG 230

Query: 218 LNPNRFWIMTS---NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYG 274
            +     I  +       L+   Y +F         +    +T E       E     Y 
Sbjct: 231 TDGKLIVITWTRFPTPNPLDDVGYKLFIENQNIDNVFTFKGKTWEINPFRKKEDFADDYE 290

Query: 275 LDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311
            +  +A+     + P      FI    ++  M     
Sbjct: 291 RNPILAKKMYECE-PPDLDAYFIDVAKLDACMVELVP 326


>gi|160898677|ref|YP_001564259.1| hypothetical protein Daci_3236 [Delftia acidovorans SPH-1]
 gi|160364261|gb|ABX35874.1| protein of unknown function DUF264 [Delftia acidovorans SPH-1]
          Length = 428

 Score = 64.2 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 84/280 (30%), Gaps = 33/280 (11%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
           S P  F+  + AG G GKT +    +       P ++    A S  Q+++  +  + +  
Sbjct: 17  SLPHKFRAFV-AGFGSGKTWVGCSGLSAHAWEFPRINAGYFAPSYPQIRDIFFPTIEEVA 75

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
                R                 E  ++      + Y  T    S +RP++         
Sbjct: 76  HDWGLRTEIR-------------ESNKEVHLYSGRQYRTTVICRSMDRPES---IVGFKI 119

Query: 193 MAVFNDE----ASGTPDIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
                DE    A    +   + I+      ++  +  +  + T     + +  F   ++D
Sbjct: 120 GQALVDELDVMAKQKAEQAWRKIIARMRYNVDGLKNGVDVTTTPEGFKFTHQQFVKAVQD 179

Query: 248 -------WKRYQIDTRTV-EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299
                  +   Q  T    + + + +   +   Y     +    + G F      +  P 
Sbjct: 180 KPELAKLYGLIQASTFENAKNLPADYIPSLFDSYPKQ--LIDAYLRGLFVNLTSGSVYP- 236

Query: 300 NYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRG 339
           ++  +            P+++G D           V R G
Sbjct: 237 DFDRKLNHSFESLQEGEPVMLGMDFNRLHMAAVAYVLRDG 276


>gi|41179386|ref|NP_958694.1| Bbp25 [Bordetella phage BPP-1]
 gi|45569518|ref|NP_996587.1| hypothetical protein BMP-1p24 [Bordetella phage BMP-1]
 gi|45580769|ref|NP_996635.1| hypothetical protein BIP-1p24 [Bordetella phage BIP-1]
 gi|40950125|gb|AAR97691.1| Bbp25 [Bordetella phage BPP-1]
          Length = 533

 Score = 64.2 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 4/82 (4%)

Query: 276 DSDVARIEILGQFPQQEVN---NFIPHNYIEEAMSREAIDDLYAPLI-MGCDIAGEGGDK 331
              +    + G F     +     IP  ++E A +R    D  AP+  +G D+A  G D 
Sbjct: 290 PEPLRSQMLYGDFNAGIEDDPWQVIPTAWVEAAQARWKRPDRLAPMDSLGVDVARGGRDN 349

Query: 332 TVVVFRRGNIIEHIFDWSAKLI 353
           T++  R     +    +  K  
Sbjct: 350 TILARRHAMWFDVPLTYPGKDT 371


>gi|152975091|ref|YP_001374608.1| hypothetical protein Bcer98_1291 [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152023843|gb|ABS21613.1| conserved hypothetical protein [Bacillus cytotoxicus NVH 391-98]
          Length = 525

 Score = 64.2 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 82/289 (28%), Gaps = 39/289 (13%)

Query: 5   ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64
           ++      ++L   L++ + VL  +NFV      G    P     Q    Q +F+  +  
Sbjct: 1   MARKPTTAEKLK--LINEDPVLWLQNFVKITTNTGEY-VPFVVNDQ----QKKFINEMG- 52

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124
                        F   I+  R IG +T++  + LW+   RP  + + ++  +     +L
Sbjct: 53  ------------RFNV-IAKARQIGFSTMSLALCLWMAMNRPRTNYMIVSYKQES-STSL 98

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
           + ++      LPH                  +     +  D+                  
Sbjct: 99  FDKLKMMYDDLPHDK---------FKFPKDTQNNRNQLKFDNGSSITLAT------AGGK 143

Query: 185 VGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244
                T    +   E +   +  +  +             ++   T      +  +F   
Sbjct: 144 DVGRGTTYEYILLSEFAFYENQDSILLSAEQALAKSKTSKLVIETTSNGFNSYQKLFMNA 203

Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293
            +   +Y+          S + +     Y       +    G+   ++ 
Sbjct: 204 YKGESKYKAFFF--PFYSSSYAKQFKDDYDEAEIWYKANNKGKRLTKDD 250


>gi|76788305|ref|YP_329267.1| prophage LambdaSa03, terminase, large subunit [Streptococcus
           agalactiae A909]
 gi|76563362|gb|ABA45946.1| prophage LambdaSa03, terminase, large subunit, putative
           [Streptococcus agalactiae A909]
          Length = 471

 Score = 64.2 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/297 (13%), Positives = 80/297 (26%), Gaps = 44/297 (14%)

Query: 54  WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113
           WQ   +  +      N+       +       R  GKT +   + LW +    G+ I+  
Sbjct: 44  WQENMLIPMMAINEDNLWVHQKYGYAI----PRRNGKTEVVYILELWAL--HKGLKILHT 97

Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173
           A+  +    + + +V K+L M  +                  + +        +    + 
Sbjct: 98  AHRISTSH-SSFEKVKKYLEMSGYVD--------------GEDFISNKAKGQERIEFKSS 142

Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR-- 231
            +  + R  T  G        +  DEA         ++    T+ +     IM       
Sbjct: 143 GSVIQFRTRTSNGGLGEGFDLLIIDEAQEYTSEQESALKYTVTDSDNPMT-IMCGTPPTM 201

Query: 232 -------------------RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISR 272
                              R +GW     +                          I + 
Sbjct: 202 VSTGTVFESYRKECLKGDRRYSGWAEWSVDEMQPIHDVKSWYVANPSMGYHLNERKIEAE 261

Query: 273 YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329
            G D     I+ LG +P     + I        +  E + +L + L +G     +G 
Sbjct: 262 LGEDEIDHNIQRLGYWPSFNQKSVISEKEW-AKLKVEQVPELKSKLFVGIKFGQDGN 317


>gi|332089985|gb|EGI95085.1| hypothetical protein SB521682_2096 [Shigella boydii 5216-82]
          Length = 442

 Score = 64.2 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 71/259 (27%), Gaps = 29/259 (11%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL---KNTLWAEVSKWLSMLPH 137
           A+  GR  GKT +   +     + +          +  QL   +  ++    +    +  
Sbjct: 28  AVCCGRRWGKTVMLVNIATSFATRK------FAVPTTGQLIAGRVGIFTAQYRQYQEIWD 81

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH-NTHGMAVF 196
                        S     L+      + +              D            AV 
Sbjct: 82  E-----------ISAVLQPLILSQSKNEKRIILRNGGRIDFWVTDNNKLAGCGRKYHAVL 130

Query: 197 NDEASG------TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250
            DEA+         +I  ++I     +     +   T N    + +FY I +     +  
Sbjct: 131 IDEAAFTKSPEMLEEIWPRAIRPTLVDYRGCAWVFSTPNGIDESNFFYAICHDESLGFVM 190

Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
           +   T +   I     E    +   D  V + E L +F     +  +  + +        
Sbjct: 191 HHAPTSSNPYIPKEELEETEKKS--DPRVWQQEYLAEFVDWSKDALLDVDKLLVDGQPIE 248

Query: 311 IDDLYAPLIMGCDIAGEGG 329
           +      +    D A +GG
Sbjct: 249 MPPYCDMIFAVMDTALKGG 267


>gi|16078323|ref|NP_389140.1| PBSX defective prophage terminase large subunit [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221309110|ref|ZP_03590957.1| PBSX defective prophage terminase (large subunit) [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221313437|ref|ZP_03595242.1| PBSX defective prophage terminase (large subunit) [Bacillus
           subtilis subsp. subtilis str. NCIB 3610]
 gi|221318360|ref|ZP_03599654.1| PBSX defective prophage terminase (large subunit) [Bacillus
           subtilis subsp. subtilis str. JH642]
 gi|221322633|ref|ZP_03603927.1| PBSX defective prophage terminase (large subunit) [Bacillus
           subtilis subsp. subtilis str. SMY]
 gi|1722887|sp|P39786|XTMB_BACSU RecName: Full=PBSX phage terminase large subunit
 gi|1225943|emb|CAA94059.1| PBSX terminase [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633612|emb|CAB13115.1| PBSX defective prophage terminase (large subunit) [Bacillus
           subtilis subsp. subtilis str. 168]
          Length = 433

 Score = 64.2 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/304 (11%), Positives = 79/304 (25%), Gaps = 57/304 (18%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
            ++ ++ H   +   +    ++  +  G G  K+   A  ++  +      + + I    
Sbjct: 2   IVKEINPHFE-DYVFNWEQTYQFLV-GGYGSSKSYHTALKIVLKLLK-EKRTALVIREVF 58

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
              +++ +A   + +  L         S  L             +   +    +      
Sbjct: 59  DTHRDSTFALFQEVIEELGLTKAVASLSSPL------------QLRFHNGSRIMFKGM-- 104

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
            + P      H  +   ++ +E S       K ++G           I T+N    + W 
Sbjct: 105 -DNPAKLKSVH--NISLIWIEECSEVKYEGFKELIGRLRHPELKLHMICTTNPVGTSNWT 161

Query: 238 YDIF--------------------NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277
           Y  F                     I   D   +         +   + + +      D 
Sbjct: 162 YRHFFRDERKKRFVLDDSELYEKRTIVKGDTYYHHSTANDNLFLPESYVKQLDGLKEYDP 221

Query: 278 DVAR-----------IEILGQFPQQEVNNF------IPHNYIEEAMSREAIDDLYAPLIM 320
           D+ R           I +L QF     +        I        M     +   A + +
Sbjct: 222 DLYRIARKGRFGVNGIRVLPQFEVLPHDQVKKCIAAISKPIFRTGMDFGFEESYNAVVRL 281

Query: 321 GCDI 324
             D 
Sbjct: 282 AVDP 285


>gi|187251258|ref|YP_001875740.1| phage terminase large subunit [Elusimicrobium minutum Pei191]
 gi|186971418|gb|ACC98403.1| Phage terminase, large subunit [Elusimicrobium minutum Pei191]
          Length = 397

 Score = 63.8 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/245 (11%), Positives = 70/245 (28%), Gaps = 30/245 (12%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            G   GK+   A +++       G+++     +   LK T    V+  L           
Sbjct: 30  GGARSGKSHAVAQLLIMRALNLQGINVGITRKTMPALKMTAARLVTDLLKEYGLYSEKNH 89

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
             +  + +   + +   S+                   D      +     ++ +EA+  
Sbjct: 90  NKMEHYYNLGKSRIQFFSL-------------------DNPEKIKSAEFNYIWMEEATEF 130

Query: 204 PDIINKSILGFFTELNPNRF---WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
                 ++L   +      +     +T N    N W            +  +   +    
Sbjct: 131 TYEDYVTLLTRLSAPIKEPYKNQIFLTLNPSDSNSWIAKKLLSAQN-TQIIKSSYKDNPF 189

Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIM 320
           +   +   ++    +D +  R+  LGQ+   +   +  + +++              +I 
Sbjct: 190 LSKDYINTLLGLKDIDENYYRVFALGQWGANKNIVYDNYTFVD-------EIKNTDNVIW 242

Query: 321 GCDIA 325
           G D  
Sbjct: 243 GLDFG 247


>gi|146310689|ref|YP_001175763.1| hypothetical protein Ent638_1030 [Enterobacter sp. 638]
 gi|145317565|gb|ABP59712.1| hypothetical protein Ent638_1030 [Enterobacter sp. 638]
          Length = 402

 Score = 63.8 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 66/231 (28%), Gaps = 25/231 (10%)

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP-HNTHGMAV 195
              + + Q +      +   L++ S   + +              +             V
Sbjct: 31  TAEYRQYQEIFDKLVEYLEPLIKSSSRSEKRILLKNGGKIDFWVTNDNKLAGRGREYDLV 90

Query: 196 FNDEASG------TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
             DEA+         +I  KSI           +   T +    + +FY I       + 
Sbjct: 91  LIDEAAFTKSPEMLAEIWAKSIKPTLLTTKGRAYIFSTPDGVDEDNFFYAICRKKELGFF 150

Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309
            +   T +   +     E    R   +  V R E L +F     +     +   E    +
Sbjct: 151 EHYAPTSSNPFVPPEELEK--ERLSCEPRVFRQEFLAEFVDWSADALFDVSKWLE----D 204

Query: 310 AIDDLYAPLIMGC----DIAGEGG---DKTVVVF-----RRGNIIEHIFDW 348
                +  + M      D A +GG   D T VV+     R G     I DW
Sbjct: 205 GKPVEFPEMCMAVFAVMDTAVKGGIEHDGTAVVYYAIDTRPGRERLTILDW 255


>gi|92118001|ref|YP_577730.1| phage terminase [Nitrobacter hamburgensis X14]
 gi|91800895|gb|ABE63270.1| phage Terminase [Nitrobacter hamburgensis X14]
          Length = 545

 Score = 63.8 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 95/336 (28%), Gaps = 63/336 (18%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS---TRPGM 108
            RW    +  +    H +      T+F       RG  KT+L A + L         PG 
Sbjct: 47  DRWMERVIRRIYGPRHPDGTRIVKTVFAMI---PRGNRKTSLGAALTLLHSIGPEKTPGG 103

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            ++C A  + Q +   + E    +                     +  +      ID ++
Sbjct: 104 QVVCAAADQKQAR-IAFEEAVGIIRS-------------------HKTINRVVDIIDHRN 143

Query: 169 YTITCRTYS--EERPDTFVGPHNTHGMAVFNDEASGTP-DIINKSILGFFTELNPNRFWI 225
                R+ S  E         H         DE    P   + +++     +   +   I
Sbjct: 144 RFRDQRSGSLVEAISADAKTQHGRTPSFTLMDEIHAWPKRDLWEALKTGLVKTAGSLNVI 203

Query: 226 MTSNTRRLNGWFYDIFNIPLE----------------------DWKRYQIDTRTVEGIDS 263
           +T+  R      ++ ++   +                      DW+   I  R   G+  
Sbjct: 204 ITTAGRGQENIAFEQYSYARKVALGEIDDPATLPVIFEAPADCDWQDETIWHRVNPGLKH 263

Query: 264 GF--------HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDL 314
           G+                  D D  +   L  +     + F+  +  +E           
Sbjct: 264 GYPDLDGLRQLAREGRERPGDRDSFKQLNLNIWSDSSSSPFVGMDIYDEGADPINLDALA 323

Query: 315 YAPLIMGCDIAGEGGDKTVV--VFRRGNIIEHIFDW 348
             P  +G D++    D TV+   +R G     +  W
Sbjct: 324 GQPCWLGVDLS-SNTDLTVIVAAWRDGTGGYIVHPW 358


>gi|226363443|ref|YP_002781225.1| hypothetical protein ROP_40330 [Rhodococcus opacus B4]
 gi|226241932|dbj|BAH52280.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 441

 Score = 63.8 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/297 (11%), Positives = 79/297 (26%), Gaps = 35/297 (11%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             WQ   +    +       +S  + F+ A+   R  GK  +     L  +      +++
Sbjct: 4   DEWQQHVL----IQSLGRRKDSKWSSFEVALLVPRQNGKGAVIEARELAGLFLIGEQTLL 59

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A+     K      + + +   P  +             +     + S+ +  K    
Sbjct: 60  HSAHEFKTAKEAYLR-IKQLIEQTPELNDLT--------KQFRFSNEDVSVELHPKKGRS 110

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
                         G     G     DEA   PD    +++   +  +  + W  +S   
Sbjct: 111 VGARLKFVARSKGSG-RGFSGDLNILDEAYELPDEALAALMPTMSARDNPQLWYTSSAPL 169

Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
             +     +     +  +R      +               + L +    I I  +F + 
Sbjct: 170 PHSAVLRRVQERGRQGGRRLAYFEWSAPD---DADLDDHEAWRLANPGYGIRIDDEFIES 226

Query: 292 EVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDK---TVVVFRRGNIIEHI 345
           E       ++  E +                D+     D     V+    G+++  +
Sbjct: 227 EREAMTDGDFARERLGI-------------ADVGR--RDAPIGAVLWKDCGDVMSTV 268


>gi|22536761|ref|NP_687612.1| hypothetical protein SAG0585 [Streptococcus agalactiae 2603V/R]
 gi|22533605|gb|AAM99484.1|AE014218_1 conserved hypothetical protein [Streptococcus agalactiae 2603V/R]
          Length = 471

 Score = 63.8 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/297 (13%), Positives = 80/297 (26%), Gaps = 44/297 (14%)

Query: 54  WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113
           WQ   +  +      N+       +       R  GKT +   + LW +    G+ I+  
Sbjct: 44  WQENMLIPMMAINEDNLWVHQKYGYAI----PRRNGKTEVVYILELWAL--HKGLKILHT 97

Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173
           A+  +    + + +V K+L M  +                  + +        +    + 
Sbjct: 98  AHRISTSH-SSFEKVKKYLEMSGYVD--------------GEDFISNKAKGQERIEFKSS 142

Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR-- 231
            +  + R  T  G        +  DEA         ++    T+ +     IM       
Sbjct: 143 GSVIQFRTRTSNGGLGEGFDLLIIDEAQEYTAEQESALKYTVTDSDNPMT-IMCGTPPTM 201

Query: 232 -------------------RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISR 272
                              R +GW     +                          I + 
Sbjct: 202 VSTGTVFESYRKECLKGDRRYSGWAEWSVDEMQPIHDVKSWYVANPSMGYHLNERKIEAE 261

Query: 273 YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329
            G D     I+ LG +P     + I        +  E + +L + L +G     +G 
Sbjct: 262 LGEDEIDHNIQRLGYWPSFNQKSVISEKEW-AKLKVEQVPELKSKLFVGIKFGQDGN 317


>gi|321315003|ref|YP_004207290.1| PBSX defective prophage terminase large subunit [Bacillus subtilis
           BSn5]
 gi|291483777|dbj|BAI84852.1| PBSX defective prophage terminase large subunit [Bacillus subtilis
           subsp. natto BEST195]
 gi|320021277|gb|ADV96263.1| PBSX defective prophage terminase (large subunit) [Bacillus
           subtilis BSn5]
          Length = 433

 Score = 63.8 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/304 (11%), Positives = 78/304 (25%), Gaps = 57/304 (18%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
            ++ ++ H   +   +    ++  +  G G  K+   A  ++  +      + + I    
Sbjct: 2   IVKEINPHFE-DYVFNWEQTYQFLV-GGYGSSKSYHTALKIVLKLLK-EKRTALVIREVF 58

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
              +++ +A   + +  L         S  L             +   +    +      
Sbjct: 59  DTHRDSTFALFQEVIEELGLTKAVASLSSPL------------QLRFHNGSRIMFKGM-- 104

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
            + P      H  +   ++ +E S       K ++G           I T+N    + W 
Sbjct: 105 -DNPAKLKSVH--NISLIWIEECSEVKYEGFKELIGRLRHPELKLHMICTTNPVGTSNWT 161

Query: 238 YDIF--------------------NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277
           Y  F                     I   D   +         +   + + +      D 
Sbjct: 162 YRHFFRDERKKRFVLDDSELYEKRTIVKGDTYYHHSTANDNLFLPESYLKQLDGLKEYDP 221

Query: 278 DVARIEILGQFPQQEVNNF-----------------IPHNYIEEAMSREAIDDLYAPLIM 320
           D+ RI   G+F    +                    I        M     +   A + +
Sbjct: 222 DLYRIARKGRFGVNGIRVLPQFEVLPHNQMKKCIAAISKPIFRTGMDFGFEESYNAVVRL 281

Query: 321 GCDI 324
             D 
Sbjct: 282 AVDP 285


>gi|313891712|ref|ZP_07825317.1| putative phage terminase, large subunit [Dialister microaerophilus
           UPII 345-E]
 gi|313119706|gb|EFR42893.1| putative phage terminase, large subunit [Dialister microaerophilus
           UPII 345-E]
          Length = 574

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 87/295 (29%), Gaps = 31/295 (10%)

Query: 69  NVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLIST--RPGMSIICIANSETQLKNTLW 125
               SN   F+ A +  GR  GK+   A +     +        I C A    Q K  +W
Sbjct: 85  RKKRSNEKRFREAYVQMGRQNGKSFFAAELCNDFATFSGYREGRIFCTATKMEQAK-IVW 143

Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185
            EV+K++     +  FE+  +  + S   +++    +    +  T      S        
Sbjct: 144 QEVAKFIRA--DKDLFELYEIKEYNSTILSKITNTVIKAIGRDTTSADGFRSVLAIIDEY 201

Query: 186 GPHNTHGMAVFNDEASGTPDIINKSILGF----FTELNPNRFWI---MTSNTRRLNGWFY 238
             HNT  M     +     D      +             ++     +     + +  F 
Sbjct: 202 HAHNTDQMYQLMRKGQIKVDNALTVAITTAGFNLNSPCYQQYQFCKKIIEGVLKKDSLFI 261

Query: 239 DIFNIPLED--WKRYQID-------TRTVEGIDSGFHEGI-------ISRYGLDSDVARI 282
            I  +  +D  WK             +    ++      +         + G D    R 
Sbjct: 262 YIAEMDKDDDIWKPANWAKANPLILWKDDITLNKEMLARMAETAIDAREKGGKDLVDFRT 321

Query: 283 EILGQFPQQEVNNFIPHNYIEEA-MSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
           + L  +       FI     +    ++   D       +G D++  GGD T +  
Sbjct: 322 KHLNTWVTYTGGAFIDLAKWKLCETNKTIDDMKGKTAYLGIDLS-SGGDLTSIAL 375


>gi|251778259|ref|ZP_04821179.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|243082574|gb|EES48464.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 416

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/285 (11%), Positives = 76/285 (26%), Gaps = 27/285 (9%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
             + +    +     +  T F      G G GK+      M+         + + I    
Sbjct: 5   ISKKMFNETYLPQLENYDTRFNV-YYGGAGSGKSVFVFQKMVLKYLKYENRTCLVIRKIN 63

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
             LK++ +A V   LS        ++    L            ++ + +    +      
Sbjct: 64  NTLKDSCFALVKSILSDWQLYDQCKINKTDL------------TIELPNGSLFLFKGL-- 109

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
            + P+     +      +  +E +   D     +        P     +  N    + W 
Sbjct: 110 -DDPERIKSING--IDDIIVEECTEIDDFTFDQLCLRLRSKKPYNQVHVMFNPVSKSNWV 166

Query: 238 YDIF--------NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
           +  +           L +    +   R  + +   + + ++     +    RI  LG+F 
Sbjct: 167 FSRWFNPMNSNPRTDLNNTMVLKTTYRDNKFLPQDYIDNLLEMKATNRVYYRIYALGEFA 226

Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334
                 +      E    +   ++     +   D      D T  
Sbjct: 227 TLSKLVYTNWEVKEFDYKQILKENYNRQAVFNLDFGYT-NDPTAF 270


>gi|118462814|ref|YP_880086.1| phage terminase, large subunit, putative [Mycobacterium avium 104]
 gi|118164101|gb|ABK64998.1| phage terminase, large subunit, putative [Mycobacterium avium 104]
          Length = 485

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/307 (11%), Positives = 74/307 (24%), Gaps = 56/307 (18%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ   +        +         F+  +   R  GK      + L  +   PG+SI+ 
Sbjct: 16  PWQELVVREGMATDDAGRW----LAFEVGVLVARQNGKNGGIEVVELGWMINEPGVSILH 71

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            A+       ++       L  L   H      ++    G   E +        +  T T
Sbjct: 72  TAHEFQTAMESM-----DKLEALILSHPLLENEVAQIRRGNGRESIRLKNESIIRFRTRT 126

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232
                                 +  DEA         +I+   T     + W + S    
Sbjct: 127 KSG-----------GRGFSVDRLVIDEAMIWSPASQAAIMPLLTTAKNPQIWYLGSAADE 175

Query: 233 LNGWFYDIFNIPLED----------------------------WKRYQIDTRTVE----- 259
               +   +                                  W+  + +          
Sbjct: 176 ETHEYCGKWASLRARALAGDDPKLLWLEWSAPEPPEDPAARRVWREDRANWAAANPSMDY 235

Query: 260 GIDSGFHEGIISRYGLDSDVARIEIL--GQFPQQEVNN-FIPHNYIEEAMSREAIDDLYA 316
            +   + E  ++ +  D     +E L  G++P+   +    P    +             
Sbjct: 236 LVTEEYIEDELAAFRRDLAKWEVERLSVGRWPKDITDVHIFPIEKWDALGDGSPDLVNIY 295

Query: 317 PLIMGCD 323
           P ++  D
Sbjct: 296 PQVIAVD 302


>gi|53802921|ref|YP_115325.1| prophage MuMc02, terminase, ATPase subunit [Methylococcus
           capsulatus str. Bath]
 gi|53756682|gb|AAU90973.1| putative prophage MuMc02, terminase, ATPase subunit [Methylococcus
           capsulatus str. Bath]
          Length = 443

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 66/275 (24%), Gaps = 29/275 (10%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM----SIICIANSETQLKNTLWAEVS 129
           + + FK  + A R  GKT      ++               + ++  E Q +  +   V 
Sbjct: 16  DASRFKVGMFA-RQCGKTFTTTLELVMDCLQAEAQGGRRRWVILSRGERQAREAMEEGVK 74

Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189
           + L                        L                 +     P        
Sbjct: 75  RHLHAFQTGFKALEYDFEASVKALEVVLP--------------GGSRISALPANPDTARG 120

Query: 190 THGMAVFNDEASG--TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
                V  DE +       I +++    +  +      + S        FYD+       
Sbjct: 121 FTAS-VLLDEFAFHADSRKIWQALFPVVSRSDLKLR--VISTPNGKGNKFYDLITGDHPV 177

Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI---EE 304
           W R+  D               +     D D    E   Q+  +    ++    I   E 
Sbjct: 178 WSRHVTDIYQAVADGLPRDIEELKAGVGDDDAWAQEYELQWLDEAS-AWLSFELINSVEH 236

Query: 305 AMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRG 339
             +         P  +G DIA    D  V+     
Sbjct: 237 DHAGIPEHYAGGPCFLGVDIAAR-NDLFVIWVLEA 270


>gi|238021116|ref|ZP_04601542.1| hypothetical protein GCWU000324_01014 [Kingella oralis ATCC 51147]
 gi|237868096|gb|EEP69102.1| hypothetical protein GCWU000324_01014 [Kingella oralis ATCC 51147]
          Length = 408

 Score = 63.4 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/246 (10%), Positives = 60/246 (24%), Gaps = 36/246 (14%)

Query: 90  KTTLNA-WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
           K+   A    +W +     +  +C    +  +K + +AE+   ++      W E+     
Sbjct: 36  KSFNFAKMAAIWGLV--EPLRFLCTREFQNSIKESFYAELKAAIAS---EPWLEV----- 85

Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN-THGMAVFNDEASGTPDII 207
                  ++    +   +    +      +   +      +         +EA    +  
Sbjct: 86  -----AYDVGVDYIRGRNGTEFLF-----KGLRNNIQSVKSLAKIDVCIVEEAEDISEAA 135

Query: 208 NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGIDSGFH 266
            + +            W++  N ++ N      F   P       +++            
Sbjct: 136 WEVLEPTIRAPKSE-IWVIW-NPKQENSATDRRFRKNPPPRSCIMEMNYGDNPFFPPELE 193

Query: 267 EGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
           E    +    D         G + +Q                  A            D A
Sbjct: 194 ELRRHQQQTLDPARYAWIWEGAYYEQSEAQVF------RGKYEIAEFVPGEN----WDGA 243

Query: 326 GEGGDK 331
             G D 
Sbjct: 244 YFGLDF 249


>gi|222147665|ref|YP_002548622.1| Phage terminase-like protein [Agrobacterium vitis S4]
 gi|221734653|gb|ACM35616.1| Phage terminase-like protein [Agrobacterium vitis S4]
          Length = 530

 Score = 63.4 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/318 (11%), Positives = 88/318 (27%), Gaps = 57/318 (17%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR---PGM 108
             WQ   +  +    H N       +   A+   RG  KT+L A + L         PG 
Sbjct: 43  DPWQERIVRRIYGPRHPNGRR---IVRTVAMLLPRGNRKTSLGAALALLHTIGPENLPGG 99

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
             +  A+  +Q +       +   +         +                +++  D++ 
Sbjct: 100 ECMVAASDRSQARIAYQEAYNIIGAEPRMDGRLHLTDSKNRIRNPKTGAFFEAISADART 159

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP-DIINKSILGFFTELNPNRFWIMT 227
                              H    +    DE    P   + ++I     ++  +   +++
Sbjct: 160 ------------------AHGHTPVFALVDELHAWPKRDLWEAIRSGLVKVAGSLLMVIS 201

Query: 228 SNTRRLNGWFYDIFNIPLE----------------------DWKRYQIDTRTVEG--IDS 263
           +  R      ++ ++   +                      DW+   +   +  G     
Sbjct: 202 TAGRGQENVAWEFYDYARKVQRGEIIDESWLPILFETPRDADWQDETVWYASNPGLAFGY 261

Query: 264 GFHEGIISRYGL------DSDVARIEILGQFPQQEVNNFIPHNYIEE-AMSREAIDDLYA 316
               G+            + +  +   L  +    ++ F+     +E A   +  D    
Sbjct: 262 PDIAGMRQLARESAEIPAEREAFKQLNLNIWLDHSLDPFVDMMVYDEGAYPVDLDDLEGK 321

Query: 317 PLIMGCDIAGEGGDKTVV 334
           P  +G D++    D T V
Sbjct: 322 PCWLGVDLS-SNNDLTAV 338


>gi|262194298|ref|YP_003265507.1| hypothetical protein Hoch_1017 [Haliangium ochraceum DSM 14365]
 gi|262077645|gb|ACY13614.1| protein of unknown function DUF264 [Haliangium ochraceum DSM 14365]
          Length = 478

 Score = 63.4 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 34/342 (9%), Positives = 83/342 (24%), Gaps = 71/342 (20%)

Query: 34  RFFPWGIKGKPLEHFSQP---HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
               WG      +   +P    R+Q+ F+                + F+  ++  R +G 
Sbjct: 17  LANEWGFLAGLAKFDDEPVTLERYQMVFLRN-------------RSRFR-WVTKSRQVGF 62

Query: 91  TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
           + + A   L     R   + + ++ +    K  +     +    LP  +   +       
Sbjct: 63  SFVFALEALARCHLRDKHTAVFVSYNLEDAKEKVL-IARQIHEELPLAYQKRL------- 114

Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG--TPDIIN 208
                   +  +  +S                   G        V+ DE +       + 
Sbjct: 115 ----VVDSKTELAFESNSSNKRLSRIISAPSKAPRGKKGD----VYLDELAHYVLDREVY 166

Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID---TRTVEGIDSGF 265
                     +        S      G F++I    L  +  +  D              
Sbjct: 167 TGSTALILRSHGQLSSC--STPLGRRGIFWEISTEELRKYPHHTRDEVPWWRCRFFCLDI 224

Query: 266 HEGIISRYGLDSDV---------------------ARIEILGQFPQQEVNNFIPHNYIEE 304
              +     + ++                       + E    F  +   ++ P+  I  
Sbjct: 225 DRAVREAPHMPTEERVAAFGTQAIVQQLDSLALEDFQQEFECSFVDESY-SYYPYELILP 283

Query: 305 AMSREA--------IDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
             S +         + +    ++ G D+     D + +    
Sbjct: 284 CTSEDLVLAGDFTDLPEPEGRIVAGFDVGRT-RDHSELAVFE 324


>gi|134288591|ref|YP_001110830.1| hypothetical protein SPSV3_gp30 [Salmonella phage SETP3]
 gi|125631956|gb|ABN47359.1| hypothetical protein [Salmonella phage SETP3]
 gi|126015316|gb|ABN70689.1| terminase [Salmonella phage SETP5]
 gi|126015318|gb|ABN70690.1| terminase [Salmonella phage SETP12]
          Length = 423

 Score = 63.4 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 39/283 (13%), Positives = 87/283 (30%), Gaps = 15/283 (5%)

Query: 81  AISAGRGIGKTTLNAW-MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
           A  AG G GK+ +     +L  +       I     +   ++  L   + + LS    R+
Sbjct: 23  AFVAGFGTGKSEVMCNSALLDSMEGGSDSLIAMYEPTYDLVRLILAPRMEEKLSDWGIRY 82

Query: 140 WFEMQSLSLH-PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
            +      ++  SG + + + +++   ++           +  DT    H  H       
Sbjct: 83  KYNKSDNIIYTSSGQFGDFVLRTLDNPARIVGYESFRAKIDELDTLNKDHAEHAWNKVIA 142

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-DWKRYQIDTRT 257
                P    + I             +    T     + +D + +     ++  Q  T +
Sbjct: 143 RNRQLP-RTYRPITP------KPANTVSVFTTPEGFRFVHDRWVVKKNPGYEMIQAPTTS 195

Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317
              +   + + +   Y     +    I G+F     ++   + Y +   S          
Sbjct: 196 NPFLPEDYVQSLRDTY--PGRLIDAYIDGEFVNLTSDSVY-YAYDQRKNSSRETIQPGET 252

Query: 318 LIMGCDIAGEGGDKTVVVFRRGNIIEHIFDW-SAKLIQETNQE 359
           L +G D    G   + V  +RG +   + +        E  +E
Sbjct: 253 LYIGQDF-NVGHMASTVYVQRGYVWHAVAELVDMLDTPEVVRE 294


>gi|190890121|ref|YP_001976663.1| hypothetical protein RHECIAT_CH0000492 [Rhizobium etli CIAT 652]
 gi|190695400|gb|ACE89485.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
          Length = 465

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/300 (11%), Positives = 74/300 (24%), Gaps = 49/300 (16%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM---------SII 111
            +                +  +  GR  GK+   A + ++L                +++
Sbjct: 44  ELYQKHTGRTEAPTEAQREGWLVIGRRGGKSFTMALIAVFLACFFDYRQYLAPGERATVL 103

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            IA    Q +  L     +++  +          +    +  +      ++ +       
Sbjct: 104 VIATDRRQARVIL-----RYVRAMLDNIPLLQAMVERDTADSFDLDNSTTIEVG------ 152

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI--------INKSILGFFTELNPNRF 223
                      +F         AV  DE +             I  +I      +  +  
Sbjct: 153 ---------TASFRSTRGYTYAAVLCDELAFWRTDDAAEPDYAILDAIRPGMASIPNSML 203

Query: 224 WIMTSNTRRLNGWFYD----IFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279
               S+     G  +D     +                   I     +  +     D   
Sbjct: 204 LCA-SSPHARRGALWDAFKRFWGKDDAPLVWRAATREMNPTISQSVVDRALE---RDHAS 259

Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSR---EAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
           A  E   +F + ++  F+    +E+ +SR   E             D +G   D   +  
Sbjct: 260 AMAEYGAEF-RSDIEQFVNIEVVEDCVSRGVYERAPLPNIRYRAFVDPSGGSNDSMTLAI 318


>gi|18138498|ref|NP_542602.1| probable terminase [Halorubrum phage HF2]
 gi|32453919|ref|NP_861683.1| hypothetical protein HalHV1gp095 [Halovirus HF1]
 gi|18000439|gb|AAL55022.1| probable terminase [Halorubrum phage HF2]
 gi|32346487|gb|AAO61393.1| hypothetical protein [Halovirus HF1]
          Length = 563

 Score = 63.0 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 43/336 (12%), Positives = 85/336 (25%), Gaps = 73/336 (21%)

Query: 51  PHRWQLEFMEA--VDVHCHSNVNNSNPTIFKCA------------ISAGRGIGKTTLNAW 96
           P     + + A  ++      +    P   +              I  GR IG + +   
Sbjct: 27  PDLLAEDILRAKNLETDEIEPLTLFRPYQPRIMHAYFYGDAKILNIYKGRRIGVSYIIGI 86

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
            +L     +P      ++ ++ Q  + + +++   +                       +
Sbjct: 87  CILIEALLKPDTFYPILSKTKGQSNSRI-SDIKTLIKNA-------------KIDIPLEK 132

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-MAVFNDEASGTPDI--INKSILG 213
             +  + + +                             VF DE +   D      + L 
Sbjct: 133 DNQDEIVLPNGSRIKA-------YTGDPDSARGEDPPKTVFIDEMAFLEDQSATLDAYLP 185

Query: 214 FFTELNPNRFWIMT--------------SNTRRLNG--------WFYDIFNIPLEDWKRY 251
             +  +     + T                    N           +   +    D   +
Sbjct: 186 TISLGSSQMVQVSTPKAQNDEFMDANERGTPDGRNDFGILALKQPTFKNADEIQTDVSLF 245

Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311
           + D                ++   D +    E L + P  +   F     IE+AM R A 
Sbjct: 246 EQDVE--PVRGDFDLMAAETQRASDPNGFAQEYLCR-PVSDEYRFFSMPTIEDAMGRGAA 302

Query: 312 DDLY---------APLIMGCDIAGEGGDKTVVVFRR 338
           DD             L+MG DI G   D T +V   
Sbjct: 303 DDYSYGLRRYDTPNTLVMGVDI-GFNSDDTAIVVFE 337


>gi|330718718|ref|ZP_08313318.1| PBSX family phage terminase large subunit [Leuconostoc fallax KCTC
           3537]
          Length = 422

 Score = 63.0 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/252 (13%), Positives = 78/252 (30%), Gaps = 21/252 (8%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GRG  K++  A M++ ++      S   +      L++++ A++   ++ L     ++ 
Sbjct: 38  GGRGSTKSSFIAVMLMLMLEEDSNASAAVLRRVADTLRDSVVAQLKWAINKLGLSANWKA 97

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS-G 202
            +  L     Y        G D      + +                H   ++ +E S  
Sbjct: 98  TTSPLEIKNIYTGQKIIFRGADDPEKIKSVKVDKG------------HIKFIWFEELSEF 145

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP--LEDWKRYQIDTRTVE- 259
                 ++I           F    +  +    W  +        +D   ++    TV  
Sbjct: 146 KAAAGIRNIKQSLGRGGEQMFIFSFNPPKSQRNWTNEFVEQEKVRDDVLVHRSTYLTVPK 205

Query: 260 -GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
             + + F     +   ++      E LG+        F   N I + +  + +   +  +
Sbjct: 206 TWLGNVFISEAKALKEVNPTAYEHEYLGKVVGTGAEVF--TNIINQRI-PDELAATFDTI 262

Query: 319 IMGCDIAGEGGD 330
             G D  G G D
Sbjct: 263 YRGLDF-GFGAD 273


>gi|84687555|ref|ZP_01015431.1| hypothetical protein 1099457000249_RB2654_04994 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84664464|gb|EAQ10952.1| hypothetical protein RB2654_04994 [Rhodobacterales bacterium
           HTCC2654]
          Length = 260

 Score = 63.0 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/257 (8%), Positives = 64/257 (24%), Gaps = 39/257 (15%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
            P  WQ  F+                          R IGK+   A +        PG +
Sbjct: 29  PPDNWQRRFLTTASPF--------------VMALCSRRIGKSQTTAILAA-QTIGAPGRT 73

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           ++ ++ +  Q +      +  W +M        +   ++  +                  
Sbjct: 74  VLVLSPTLGQSQLLFKRILEAWAAMSLPIEKTRLTQTTMELANGSVVACVP--------A 125

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                +                   +  +E +   D +  + +    +       ++ + 
Sbjct: 126 GQDGSSARGYGVKDGG--------LLIYEEGAFLADAVYDATIPIREDGGR---ILLITT 174

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
              + G+ +  +    ++ ++    +  +E +             +       E   ++ 
Sbjct: 175 PGNVGGFAHTAWTEN-DEIEKITARSTEIERMAEKVAFDRR---YMPPRQFATEHELRW- 229

Query: 290 QQEVNNFIPHNYIEEAM 306
               +       IE A 
Sbjct: 230 SSGGDPLFASETIENAF 246


>gi|168699883|ref|ZP_02732160.1| hypothetical protein GobsU_10183 [Gemmata obscuriglobus UQM 2246]
          Length = 205

 Score = 63.0 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 56/221 (25%), Gaps = 35/221 (15%)

Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
               P    +    +  Q    L  +V  +   L                       + S
Sbjct: 4   ALLYPRADCLVFCPTMRQSMEML-RKVRDFYRALG-------------SPVAELADTKTS 49

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221
           + + +          S+E    F  P       V  DE S   D + KS+          
Sbjct: 50  LELANGSRV-ISLPDSQEGVVGFSAPR-----LVVIDEGSRVSDELYKSVRPMLAVSKGQ 103

Query: 222 RFWIMTSNTRRLNGWFYDIFNIPLED----------WKRYQIDTRTVEGIDSGFHEGIIS 271
                 S      GWF+DI++   E           W+R  +    +  I   F E   +
Sbjct: 104 LL--TLSTPFGNQGWFFDIWDDSAEGLKRRSKLHEPWQRTAVPASQIPRITPEFLEDERA 161

Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
             G      + E   +F     +       I  A S     
Sbjct: 162 ELGE--RWFQQEYFLRFLDSI-DAVFSQAVIHGARSEGIEP 199


>gi|94994695|ref|YP_602793.1| phage terminase [Streptococcus pyogenes MGAS10750]
 gi|94548203|gb|ABF38249.1| phage terminase [Streptococcus pyogenes MGAS10750]
          Length = 476

 Score = 63.0 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/298 (13%), Positives = 77/298 (25%), Gaps = 44/298 (14%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ   +  +       +       +       R  GKT +   + LW +    G+ I+ 
Sbjct: 48  PWQENMLIPIMAVDEDGLWVHQKYGYAI----PRRNGKTEVVYIVELWAL--HKGLKILH 101

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            A+  +      + +V K+L M  +                  + +        +     
Sbjct: 102 TAHRISTSH-ASFEKVKKYLEMSGYVD--------------GEDFISNKAKGQERIEFKA 146

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR- 231
                + R  T  G        +  DEA         ++    T+ +     IM      
Sbjct: 147 SGAVIQFRTRTSNGGLGEGFDLLIIDEAQEYTSEQESALKYTVTDSDNPMT-IMCGTPPT 205

Query: 232 --------------------RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271
                               R +GW        ++                      I +
Sbjct: 206 MVSTGTVFEAYRKDCLKGNKRYSGWAEWSVPEMVKINDVSSWYISNPSMGFHLNERKIEA 265

Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329
             G D     I+ LG +P     + I        +  E + +L + L +G     +G 
Sbjct: 266 ELGEDEIDHNIQRLGYWPSFNQKSVISEKEW-AKLKVEQVPELKSKLFVGIKFGQDGN 322


>gi|169633422|ref|YP_001707158.1| putative phage terminase [Acinetobacter baumannii SDF]
 gi|169152214|emb|CAP01118.1| conserved hypothetical protein; Putative phage terminase
           [Acinetobacter baumannii]
          Length = 432

 Score = 63.0 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 75/287 (26%), Gaps = 34/287 (11%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
            P  F+  + AG G GKT +    +     + P + +   A +  Q+++  +  +     
Sbjct: 23  LPNKFRAFV-AGFGSGKTWVGCSSLCDKSWSFPKVPLGYFAPTYPQIRDIFFPTI----- 76

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
                  F+             E  ++      + Y  T    S E+P+T          
Sbjct: 77  ---DEVAFDWG-----LKTKIYESNKEVDLYYGRQYRSTIICRSMEKPNT---IVGFKIG 125

Query: 194 AVFNDEASGTP----DIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW 248
               DE             + I+     +       I  + T     + ++ F       
Sbjct: 126 HALIDELDVMTKVKAQQAWRKIIARMRYKQAGLLNGIDVATTPEGFKFTHEQFVKEANQS 185

Query: 249 KRYQ--------IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
              +                +   +   +   Y     +    + GQF         P +
Sbjct: 186 DAKRALYGMIQASTYDNEANLPDDYIASLFESY--PPQLISAYLKGQFVNLTSGAVYP-D 242

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
           +       +        L++G D         VV   R      + +
Sbjct: 243 FDRTLNHTDEEIRPNEALLIGMDFNVL-KMAAVVYVIRDGKPRALDE 288


>gi|320105341|ref|YP_004180931.1| hypothetical protein AciPR4_0096 [Terriglobus saanensis SP1PR4]
 gi|319923862|gb|ADV80937.1| hypothetical protein AciPR4_0096 [Terriglobus saanensis SP1PR4]
          Length = 484

 Score = 62.7 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/316 (12%), Positives = 70/316 (22%), Gaps = 58/316 (18%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
            +   R +G +T  A          PG   + +A++  +    ++  V +    LP    
Sbjct: 59  IVLKARQMGMSTWIAGQFFLKTIQTPGTMTVLVAHT-REATEQMFRIVQRMWENLPDDLR 117

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
                         +      M   +        +  E+     +   N H       E 
Sbjct: 118 EGP--------AKRSRANVGQMAFPALDSEFRVVSAGEQNAGRSMSIQNLH-----CSEL 164

Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI-DTRTVE 259
           S  P     ++ G    L P    ++ S      G FY  +                   
Sbjct: 165 SRWPGDAASTLAGLKAALAPGGEMVLESTPNGAYGCFYQEWMEAEAQRMARHFLPWWMEP 224

Query: 260 GIDSGFHE-------------------GIISRYGLDSDVARIEILGQFPQQ-------EV 293
                  E                     I          R     +F +          
Sbjct: 225 TYLGARVEASDWTEEERALVSREGLRPEQIGYRRELQRTYRGMARQEFAEDAVSCFRASG 284

Query: 294 NNFIPHNYIEEAMSR---------------EAIDDLYAPLIMGCDIAGEG--GDKTVVVF 336
             F   + IE  ++                          ++  D AG G  GD      
Sbjct: 285 ECFFELDAIEARLAELTPPLASRRSGSLLLWMPPVKGRRYLIASDPAGGGSEGDFAAAQV 344

Query: 337 RRGNIIEHIFDWSAKL 352
              ++     +   +L
Sbjct: 345 VDIDLGLQCAELRQRL 360


>gi|208429857|ref|YP_002265410.1| large terminase [Clostridium phage 39-O]
 gi|190683340|gb|ACE81984.1| large terminase [Clostridium phage 39-O]
          Length = 425

 Score = 62.7 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 80/272 (29%), Gaps = 22/272 (8%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           +  GRG  K++  + ++  LI        + +      LK +++ ++   ++ L    +F
Sbjct: 36  LKGGRGSTKSSFVSKVIPLLIMANNDCHAVIVRKVGQTLKGSVYNQMIWSINDLGLNGYF 95

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
           ++    L             +     +  I      +      +         V+ +E  
Sbjct: 96  KVYKSPLK------------IVYTPTNQEIIFLGCDDPMKAKGITVPFGRIGIVWYEELD 143

Query: 202 GTP-DIINKSILGFFTELNPNRFWIMTSNTRR-LNGWFYDIFNIPLEDWKRYQIDTRTVE 259
                   +S+   F   N + +   T N  +  N W  +   I  ED   +     TV 
Sbjct: 144 QFNGMEEIRSMTQSFIRKNGDNWVFYTFNPPKSKNNWVNEEQLIDREDRLIHHSTYLTVP 203

Query: 260 --GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317
              +   F         +  +  + E LG+       N   +  I E    +   +    
Sbjct: 204 SDWLGQQFIIEAEHLKNVKEEAYKHEYLGE-VTGTGGNVFDNVIIRE--ITKEEINNMEE 260

Query: 318 LIMGCDIAGEGGDKTVVVFRR--GNIIEHIFD 347
              G D  G   D           N +  I +
Sbjct: 261 FEYGVDF-GFSIDPATWCKIHYKNNKLYIIDE 291


>gi|257885123|ref|ZP_05664776.1| terminase large subunit [Enterococcus faecium 1,231,501]
 gi|257820975|gb|EEV48109.1| terminase large subunit [Enterococcus faecium 1,231,501]
          Length = 432

 Score = 62.7 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/273 (10%), Positives = 77/273 (28%), Gaps = 27/273 (9%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
            I       GRG GK++  A  ++  +  R  ++ + I   +  L+ +++ ++   +   
Sbjct: 24  DILNIVCKGGRGSGKSSDIA-HIVTQLLMRYAVNAVGIRYVDNTLEQSIYEQMKWAIEKQ 82

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
                F+     L             +    +   +  R          +          
Sbjct: 83  GVSRLFKFNKSPLK------------ITYLPRGNYMIFRGAQNPERIKSLKDSKFPFAIG 130

Query: 196 FNDE-ASGTPDIINKSILGFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLED 247
           + +E A    +    +I                +  + N   R   W    +      ++
Sbjct: 131 WIEELAEFKTEDEVTTITNSLLRGELDDGLFYKFFYSYNPPKRKQSWVNKKYETSFQPDN 190

Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN--YIEEA 305
              +    +    I   F + + +    +   A  E  G   +   +  +P +   +++ 
Sbjct: 191 TFIHHSTYQDNPFISKEFLKEVEATRERNPRRAEWEYDG---KAVGSGVVPFDNLQVKKG 247

Query: 306 MSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
              + +   +  +  G D  G   D    V   
Sbjct: 248 SISDEMVSNFDNIRNGLDF-GYATDPLAFVRWH 279


>gi|251782540|ref|YP_002996842.1| phage terminase [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242391169|dbj|BAH81628.1| phage terminase [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 476

 Score = 62.7 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 40/298 (13%), Positives = 77/298 (25%), Gaps = 44/298 (14%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ   +  +       +       +       R  GKT +   + LW +    G+ I+ 
Sbjct: 48  PWQENMLIPIMAVDEDGLWVHQKYGYAI----PRRNGKTEVVYIVELWAL--HKGLKILH 101

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            A+  +      + +V K+L M  +                  + +        +     
Sbjct: 102 TAHRISTSH-ASFEKVKKYLEMSGYVD--------------GEDFISNKAKGQERIEFKA 146

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR- 231
                + R  T  G        +  DEA         ++    T+ +     IM      
Sbjct: 147 SGAVIQFRTRTSNGGLGEGFDLLIIDEAQEYTSEQESALKYTVTDSDNPMT-IMCGTPPT 205

Query: 232 --------------------RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271
                               R +GW        ++                      I +
Sbjct: 206 MVSTGTVFEAYRKDCLKGNKRYSGWAEWSVPEMVKINDVSSWYIANPSMGFHLNERKIEA 265

Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329
             G D     I+ LG +P     + I        +  E + +L + L +G     +G 
Sbjct: 266 ELGEDEIDHNIQRLGYWPSFNQKSVISEKEW-AKLKVEQVPELKSKLFVGIKFGQDGN 322


>gi|33601198|ref|NP_888758.1| putative phage terminase [Bordetella bronchiseptica RB50]
 gi|33602480|ref|NP_890040.1| putative phage terminase [Bordetella bronchiseptica RB50]
 gi|33575633|emb|CAE32711.1| putative phage terminase [Bordetella bronchiseptica RB50]
 gi|33576919|emb|CAE33999.1| putative phage terminase [Bordetella bronchiseptica RB50]
          Length = 425

 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/263 (12%), Positives = 72/263 (27%), Gaps = 33/263 (12%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
            P  F+  + AG G GKT +    +       P ++    A +  Q+++  +  + +   
Sbjct: 14  LPHKFRAFV-AGFGSGKTWVGGAGLCRHAWEFPRVNSGYFAPTYGQIRDIFYPTIEEVAH 72

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
                            +    E  ++      + Y  T    S E+P            
Sbjct: 73  DWG-------------LAAKINESNKEVHLFAGRKYRGTVICRSMEKPGD---IVGFKIG 116

Query: 194 AVFNDEASGTPDI----INKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW 248
               DE             + I+             +  + T     + Y  F   + + 
Sbjct: 117 KGLIDELDVMKTDKAALAWRKIIARLRHTAPGLINGVDVTTTPEGFKFVYQQFVKQVRER 176

Query: 249 K--------RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
                             + +   +   + + Y     +    + GQF      +  P N
Sbjct: 177 PDLVALYGLVQASTYENGKNLPEDYIPSLRASY--PPQLIAAYLRGQFTNLTSGSVYP-N 233

Query: 301 YIEEAMSREAIDDLYAPLIMGCD 323
           +       +A ++ +  L +G D
Sbjct: 234 FDRRLHHTDAAEEPHEELHIGMD 256


>gi|297620908|ref|YP_003709045.1| hypothetical protein wcw_0671 [Waddlia chondrophila WSU 86-1044]
 gi|297376209|gb|ADI38039.1| conserved hypothetical protein [Waddlia chondrophila WSU 86-1044]
          Length = 499

 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/331 (12%), Positives = 77/331 (23%), Gaps = 79/331 (23%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           I   R +G +T    + L             IA++       L+  V      LP     
Sbjct: 55  ILKARQLGISTFIGLLFLDRCLFNSNQHAGIIAHTREDA-EILFRRVKFAYDHLPP---- 109

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
                 +           + + + +        +       T    H          E  
Sbjct: 110 -----EIKSLRRANTDNARELQLSNGSTLRVGTSMR---SSTLQYLH--------ISEFG 153

Query: 202 GT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE----------- 246
                 P+   + I G    + P ++  + S      G+FY++                 
Sbjct: 154 KICAKYPEKAREIITGSLNAIAPGQYIFIESTAEGREGYFYEMCKEAQAAQDSGKKLTSL 213

Query: 247 -------DWKRYQIDTRTVEGIDSGFHEGI----------ISRYGLDSDVA--RIEILGQ 287
                   W  +Q      + ++   H              S           R E  G+
Sbjct: 214 DFRFHFFPWHGHQAYKIDSQTLELPSHMQRYFSRLEGILGRSLSPEQKAWYIKRSETQGE 273

Query: 288 -------------FPQQEVNNFIPHNYIEEAMS---REAIDDLYAPLIMGCDIAGEGGDK 331
                        F       +     +E       R    D   P+    D+     D 
Sbjct: 274 DMKREFPSTPEEAFEVSNEGLYYGRQIVEARQHGRIRNVYYDANVPVHTAWDLGY--NDS 331

Query: 332 TVVVFRRG-NIIEHIFDWSAKLIQETNQEGC 361
           T + + +      H+ ++      E + E  
Sbjct: 332 TAIWWYQVCGQEIHLLEY-----YENSGEPL 357


>gi|314938435|ref|ZP_07845725.1| phage terminase, large subunit, PBSX family [Enterococcus faecium
           TX0133a04]
 gi|314940850|ref|ZP_07847760.1| phage terminase, large subunit, PBSX family [Enterococcus faecium
           TX0133C]
 gi|314953782|ref|ZP_07856647.1| phage terminase, large subunit, PBSX family [Enterococcus faecium
           TX0133A]
 gi|314994570|ref|ZP_07859832.1| phage terminase, large subunit, PBSX family [Enterococcus faecium
           TX0133B]
 gi|314997239|ref|ZP_07862219.1| phage terminase, large subunit, PBSX family [Enterococcus faecium
           TX0133a01]
 gi|313588686|gb|EFR67531.1| phage terminase, large subunit, PBSX family [Enterococcus faecium
           TX0133a01]
 gi|313591038|gb|EFR69883.1| phage terminase, large subunit, PBSX family [Enterococcus faecium
           TX0133B]
 gi|313594222|gb|EFR73067.1| phage terminase, large subunit, PBSX family [Enterococcus faecium
           TX0133A]
 gi|313600298|gb|EFR79141.1| phage terminase, large subunit, PBSX family [Enterococcus faecium
           TX0133C]
 gi|313642244|gb|EFS06824.1| phage terminase, large subunit, PBSX family [Enterococcus faecium
           TX0133a04]
          Length = 434

 Score = 62.7 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 78/275 (28%), Gaps = 27/275 (9%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
           N  I       GRG GK++  A  ++  +  R  ++ + I   +  L+ +++ ++   + 
Sbjct: 24  NQDILNIVCKGGRGSGKSSDIA-HIVTQLLMRYAVNAVGIRYVDNTLEQSIYEQMKWAIE 82

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
                  F+     L             +    +   +  R          +        
Sbjct: 83  KQGVSRLFKFNKSPLK------------ITYLPRGNYMIFRGAQNPERIKSLKDSKFPFA 130

Query: 194 AVFNDE-ASGTPDIINKSILGFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPL 245
             + +E A    +    +I                +  + N   R   W    +      
Sbjct: 131 IGWIEELAEFKTEDEVTTITNSLLRGELDDGLFYKFFYSYNPPKRKQSWVNKKYETSFQP 190

Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN--YIE 303
           ++   +    R    I   F + + +    +   A  E  G   +   +  +P +   ++
Sbjct: 191 DNTFIHHSTYRDNPFISKEFLKEVEATRASNPRRAEWEYDG---KAVGSGVVPFDNLQVK 247

Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
           +    + +   +  +  G D  G   D    V   
Sbjct: 248 KGSITDEMISNFDNIRNGLD-YGYATDPLAFVRWH 281


>gi|190893406|ref|YP_001979948.1| hypothetical protein RHECIAT_CH0003832 [Rhizobium etli CIAT 652]
 gi|190698685|gb|ACE92770.1| hypothetical protein RHECIAT_CH0003832 [Rhizobium etli CIAT 652]
          Length = 443

 Score = 62.3 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/307 (16%), Positives = 80/307 (26%), Gaps = 47/307 (15%)

Query: 60  EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN---AWMML------WLISTRPGMSI 110
            A+        +       +    AGR  GKT      A  +         ++T    +I
Sbjct: 10  RAIYHQFTGRPHEPGFIPAEFFAVAGRRSGKTRAAGTLAGYVATLVDHSAYLATSERATI 69

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
             +A S  Q +    A +    S L  +      S ++                      
Sbjct: 70  PVMAASTVQAQKAFQACMVLEESSLLSKQIESSNSETIKLK------------------- 110

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-------PDIINKSILGFFTELNPNRF 223
              R   E RP                DE +            I  ++       N    
Sbjct: 111 --TRCDIEVRPANHRTIRGITSPLAIADEVAFYFTDGQNTDSQILDAVRPSLQSGNHAGP 168

Query: 224 WIMTSNTRRLNGWFYDIF---NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280
            +  S+     G  YD F   + P  D         ++E   +     I   Y  +  VA
Sbjct: 169 LVCISSPYAKRGELYDAFKNHHGPNGDAHVIVAKGASLEFNSTIDPATIARAYKRNPTVA 228

Query: 281 RIEILGQFPQQEVNNFIPHNYIEEAMS---REAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
             E  G F + +V N      +E A      E             D AG  G D   +  
Sbjct: 229 DAEYGGNF-RSDVTNLFTLEAVEAATDLGVTERAPREGVQYFAHADPAGGSGADGFTLAI 287

Query: 337 --RRGNI 341
             R  N+
Sbjct: 288 GHRENNV 294


>gi|49823279|gb|AAT68704.1| hypothetical protein [Borrelia hermsii]
          Length = 397

 Score = 62.3 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/266 (14%), Positives = 82/266 (30%), Gaps = 40/266 (15%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           + RGIG+T   A + L    T  G   + +   + +   ++  E+ + L     R  F +
Sbjct: 26  SSRGIGQTYDIATVYLERKFTPGGGDTLAVRKKKNKTVQSIHKEILELLHRYNLRREFTV 85

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
               +           +++    K   +      E   DT       H   ++ +EA+  
Sbjct: 86  SKAKI---------ETKNLIYGRKRAFVF-----EGGHDTTDLKSYAHFKDLWLEEANQF 131

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW--KRYQIDTRTVEGI 261
            +   + ++    E     +    SN    + W Y  +    ++      +   R    +
Sbjct: 132 TESDIERLIPTMRERGGRIYMS--SNPVPRSHWLYKRYIANEDNPAVCVIKSTYRDNPFL 189

Query: 262 D----SGFHEGIISRYGLDSDVARIEILG-QFPQQEVNNFIPHNYIEEAMSREAIDDLYA 316
           +      + E     Y  +    RIE+LG +F       +   +  +  +          
Sbjct: 190 NGGDVDSWLEKQRLAYHGNDIGFRIEVLGEEFDFGTAKVYQNFDVCDSDLISRVQ----- 244

Query: 317 PLIMGCDIAGEGGDKTVVVFRRGNII 342
                      G   T +  R GN +
Sbjct: 245 -----------GSFYTGIHIR-GNRV 258


>gi|206563738|ref|YP_002234501.1| putative phage terminase large subunit [Burkholderia cenocepacia
           J2315]
 gi|198039778|emb|CAR55749.1| putative phage terminase large subunit [Burkholderia cenocepacia
           J2315]
          Length = 436

 Score = 62.3 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/274 (12%), Positives = 68/274 (24%), Gaps = 54/274 (19%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
            +  GR  GK+ +  ++    +    G  +   A     L                    
Sbjct: 26  VVRCGRRYGKSYILRYLAGDALL--KGQLVGVYAPQFATL-------------------- 63

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
                      G    ++  S         +T         ++ +         +  DE 
Sbjct: 64  ---TKTYNEIYGDIEPVVTGSNKGHLIESKVTGGGIDFWSLESGLFGRGREYDLLLFDET 120

Query: 201 SGTPDIINKSILGFFT---ELNPNRFWIMTSNT--RRLNGWFYDIFNIP----------- 244
           + T D   +      +      P       S      L+ +FY +               
Sbjct: 121 AFTKDGTLEIYRDAISPVVATRPGFRMFSFSTPLVMDLSNFFYALHEHKDYKWNPKIGAD 180

Query: 245 -LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
             E +K +   +     +D  +  G        +   R EI G+F      +  P     
Sbjct: 181 NYERFKVHHRPSWCNPLVDDKWLRG--EYRKRSALSWRQEIEGEFVDWSGISLFP----- 233

Query: 304 EAMSREAIDDL-YAPLIMGCDIAGEGG---DKTV 333
             +++       Y  +    D A + G   D T 
Sbjct: 234 -NLNKPVDPHPRYDAVFAVIDTAMKSGIEHDGTA 266


>gi|308449036|ref|XP_003087834.1| hypothetical protein CRE_16583 [Caenorhabditis remanei]
 gi|308252534|gb|EFO96486.1| hypothetical protein CRE_16583 [Caenorhabditis remanei]
          Length = 411

 Score = 62.3 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 70/271 (25%), Gaps = 22/271 (8%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             WQ     A+              I    IS  R +GKT     ++  L    P +++I
Sbjct: 47  DEWQAGLGRAMLA--KRASGLYAAGIGGIIISICRQVGKTFTIGSIIFALCIIFPKLTVI 104

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A+       T  +           + + + + ++ H         +Q +   +    +
Sbjct: 105 WTAHHSRTSNETFES----------LQGFAQKRKVAPHIRQIRRVNGQQQITFKNGSRIM 154

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
                S                 V  DEA    +   + ++   T  + N   I+     
Sbjct: 155 FGARESGFGRG------FAGVDVVVADEAQILGNKALEDMVPA-TNASKNPLIILMGTPP 207

Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
           R      + F     +    +      E  +S      +            ++    P  
Sbjct: 208 RPVDP-GEAFRTRRNEAIELKKLAAAGEDTESDMLYVELGADPDADLDDWDQVAKANPSY 266

Query: 292 EVNNFIPHNYIEEAMSREAIDDLYAPLIMGC 322
                 P   I       A DD Y    +G 
Sbjct: 267 PHRT--PREAILRNRKNLADDDSYRREGLGI 295


>gi|281491541|ref|YP_003353521.1| phage terminase [Lactococcus lactis subsp. lactis KF147]
 gi|281375259|gb|ADA64772.1| Phage protein, terminase [Lactococcus lactis subsp. lactis KF147]
          Length = 469

 Score = 62.3 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/325 (13%), Positives = 80/325 (24%), Gaps = 52/325 (16%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ   ++ V       +       +       R  GKT +   + LW +    G+SI+ 
Sbjct: 41  PWQKNLLKEVMAIDEDGLWTHQKFGYSI----PRRNGKTEIVYILELWSLEQ--GLSILH 94

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            A+  +    + + ++ K+L    +    + +S+               +          
Sbjct: 95  TAHRISTSH-SSYEKLKKYLEDSGYVEGEDFKSIKAKGQ------ERLELIESGGVIQFR 147

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232
            RT S                 +  DEA         ++    T+ +     IM      
Sbjct: 148 TRTSSGGL--------GEGFDILVIDEAQEYTTEQESALKYTVTDSDNPMT-IMCGTPPT 198

Query: 233 L---------------------NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271
                                 +GW         +                      I +
Sbjct: 199 PISSGTVFTNYRDNTLAGKAKYSGWAEWSVEDVKDIHDVEAWYNSNPSMGYHLNERKIEA 258

Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDK 331
             G D     ++ LG +P+    + I                    L +G      G D 
Sbjct: 259 ELGEDKLDHNVQRLGYWPKYNQKSVISEQEWNVLKVNRLPVIKGK-LFVGI---KYGNDG 314

Query: 332 TVVVFRRGNIIEHIFDWSAKLIQET 356
             V          +   S K+  ET
Sbjct: 315 ANVAM-----SIAVKTLSGKVFVET 334


>gi|239502405|ref|ZP_04661715.1| putative phage terminase [Acinetobacter baumannii AB900]
          Length = 427

 Score = 62.3 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 77/287 (26%), Gaps = 34/287 (11%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
            P  F+  + AG G GKT +    +     + P + +   A +  Q+++  +  +     
Sbjct: 18  LPNKFRAFV-AGFGSGKTWVGCSSLCDKSWSFPKVPLGYFAPTYPQIRDIFFPTI----- 71

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
                  F+             E  ++      + Y  T    S E+P+T          
Sbjct: 72  ---DEVAFDWG-----LKTKIYESNKEVDLYYGRQYRSTIICRSMEKPNT---IVGFKIG 120

Query: 194 AVFNDEASGTP----DIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW 248
               DE             + I+     +       I  + T     + ++ F       
Sbjct: 121 HALIDELDVMTKVKAQQAWRKIIARMRYKQAGLLNGIDVATTPEGFKFTHEQFVKEANLS 180

Query: 249 KR-------YQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
                     Q  T   E  +   +   +   Y     +    + GQF         P +
Sbjct: 181 DAKRALYGMIQASTYDNEVNLPDDYIASLFESY--PPQLISAYLKGQFVNLTSGAVYP-D 237

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
           +       +        L++G D         VV   R      + +
Sbjct: 238 FDRTLNHTDEEIRPNEALLIGMDFNVL-KMAAVVYVIRDGKPRALDE 283


>gi|168704532|ref|ZP_02736809.1| hypothetical protein GobsU_33659 [Gemmata obscuriglobus UQM 2246]
          Length = 209

 Score = 61.9 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 59/226 (26%), Gaps = 40/226 (17%)

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
            +LW     P    +    +  Q    L  +V  +   L                     
Sbjct: 4   ALLW-----PKADCLVFCPTMRQSMEML-RKVRDFYRALG-------------SPVAELA 44

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT 216
             + S+ + +          S+E    F  P       V  DE S   D + KS+     
Sbjct: 45  DTKTSLELANGSRV-ISLPDSQEGVVGFSAPR-----LVVIDEGSRVSDELYKSVRPMLA 98

Query: 217 ELNPNRFWIMTSNTRRLNGWFYDIFNIPLED----------WKRYQIDTRTVEGIDSGFH 266
                      S      GWF+DI++   E           W+R  +    +  I   F 
Sbjct: 99  VSKGQLL--TLSTPFGNQGWFFDIWDDSAEGLKRRAKLHEPWQRTAVPASQIPRITPEFL 156

Query: 267 EGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
           E   +  G      + E   +F     +       I  A S     
Sbjct: 157 EDERAELGE--RWFQQEYFLRFLDSI-DAVFSQAVIHGARSEGIEP 199


>gi|227549612|ref|ZP_03979661.1| gp2, terminase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078304|gb|EEI16267.1| gp2, terminase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 540

 Score = 61.9 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/321 (14%), Positives = 82/321 (25%), Gaps = 50/321 (15%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ   +    +H    + N      +  +   R  GKT L   + LW I       ++ 
Sbjct: 42  PWQKWVL----IHGLELLPNGEFRFKRVIVEVARQNGKTLLMVILGLWRIFQFGASRVLS 97

Query: 113 IANSETQLKNTL--------WAEVSKWLSMLPHRHWFEMQSL----SLHPSGWYAELLEQ 160
            A S    ++TL        W  V ++   LP     E +      +          +E 
Sbjct: 98  AAQSLGDAEDTLDEAFALAAWNPVLRYF--LPDNPRAEEEDDEYNGAYRSRANGKAAMEL 155

Query: 161 SMGIDSKHYTITCR-TYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTEL 218
           ++    +   +  +         +  G  +        DE           +I+      
Sbjct: 156 AIAPRPEVLDLAGKMPIWSLAVTSRKGGRSKSVDLALLDELREHLDWDAWNAIVPTSRNR 215

Query: 219 NPNRFW-----------------------IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255
             ++ W                       I    T      F+     P  D        
Sbjct: 216 PRSQVWGFSNAGDLRSVVFRSLRESALKQIDDGTTAATQTAFFSYSAHPDADVLDPAAHA 275

Query: 256 RTVEGIDSGFH-------EGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR 308
           +    +            E   +  G +    R E L Q+        I     E     
Sbjct: 276 QANPSMGYSNLTADSIMAEAKDAIAGDNEPGFRAECLCQWQDVLTPGKISLKLWESLTDT 335

Query: 309 EAIDDLYAPLIMGCDIAGEGG 329
            +     A + +G D+A +G 
Sbjct: 336 TSARAPGAEVFVGIDVALDGR 356


>gi|15675368|ref|NP_269542.1| hypothetical protein SPy_1460 [Streptococcus pyogenes M1 GAS]
 gi|13622552|gb|AAK34263.1| conserved hypothetical protein - phage associated [Streptococcus
           pyogenes M1 GAS]
          Length = 471

 Score = 61.9 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/298 (13%), Positives = 79/298 (26%), Gaps = 44/298 (14%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ+  +  +     + +       +       R  GKT +   + LW +    G+ I+ 
Sbjct: 43  PWQVNMLIPIMAIDENGLWVHQKYGYAI----PRRNGKTEVVYIVQLWAL--HKGLKILH 96

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            A+  +      + +V K+L M  +                  + +        +     
Sbjct: 97  TAHRISTSH-ASFEKVKKYLEMSGYVD--------------GEDFISNKAKGQERIEFKA 141

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR- 231
                + R  T  G        +  DEA         ++    T+ +     IM      
Sbjct: 142 SGAVIQFRTRTSNGGLGEGFDLLIIDEAQEYTSEQESALKYTVTDSDNPMT-IMCGTPPT 200

Query: 232 --------------------RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271
                               R +GW        ++                      I +
Sbjct: 201 MVSTGTVFEAYRKDCLKGNKRYSGWAEWSVPEMVKINDVSSWYISNPSMGFHLNERKIEA 260

Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329
             G D     I+ LG +P     + I        +  E + +L + L +G     +G 
Sbjct: 261 ELGEDEIDHNIQRLGYWPSFNQKSVISEKEW-AKLKVEQVPELKSKLFVGIKFGQDGN 317


>gi|308186468|ref|YP_003930599.1| PBSX phage terminase large subunit [Pantoea vagans C9-1]
 gi|308056978|gb|ADO09150.1| PBSX phage terminase large subunit [Pantoea vagans C9-1]
          Length = 267

 Score = 61.9 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 60/235 (25%), Gaps = 22/235 (9%)

Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
           +  R    I+C       L+ +   EV + +  +P              +  +    +  
Sbjct: 1   MMNRESGVILCAREFMNSLEESSMQEVKQAILSVP------------WLASNFDIGDKYI 48

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221
             ID     +    +S  R +          +  + DEA    +I  + +     E    
Sbjct: 49  RTIDKTVTYV----FSGLRHNLDSIKSKARILLCWVDEAESVSEIAWQKLSPTVREEGSE 104

Query: 222 RFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL-DSDV 279
             W+   N  R        F     +D    +++                +     D   
Sbjct: 105 -IWVTW-NPERDGSATDKRFRKEAGDDCITVEMNYTDNPWFPDVLEGERQNDERRLDPAT 162

Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334
                 G + +      +   Y   A   + +      L  G D  G   D   +
Sbjct: 163 YAWVWEGAYLENSDKQVLAGKY-RVAEFSDNLWKEAERLFFGADF-GFAKDPNTL 215


>gi|225017299|ref|ZP_03706491.1| hypothetical protein CLOSTMETH_01225 [Clostridium methylpentosum
           DSM 5476]
 gi|224949916|gb|EEG31125.1| hypothetical protein CLOSTMETH_01225 [Clostridium methylpentosum
           DSM 5476]
          Length = 424

 Score = 61.9 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/248 (12%), Positives = 61/248 (24%), Gaps = 24/248 (9%)

Query: 87  GIGKTTLNA-WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
             GKT+  +   +LW  +   G        +   L+  + A +   L  L +    ++  
Sbjct: 37  RSGKTSCMSLSFVLWAFTRFDGEVFGLCGKTILSLRRNVVAPLLPVLRSLGYSCEEKISG 96

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
             L                           +  +   +           V  DE +  P 
Sbjct: 97  NYLDLRLRGKRNR--------------FYLFGGKDEGSAALIQGVTLAGVLCDEVALMPR 142

Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265
              +  +   +      ++    N      WFY  +    E+     +  R  +      
Sbjct: 143 SFVEQAIARCSVAGSKLWFNC--NPEHPFHWFYLEWIQKAEEKNALHLHFRMEDNPSLSP 200

Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD-- 323
                             +LG +  Q      P       + RE   D +    + CD  
Sbjct: 201 ALRRRYETLYSGAFYERFVLGHWTAQS-GQVYPMFDPARHVVREL-PDRFDSYYISCDYG 258

Query: 324 ---IAGEG 328
               A  G
Sbjct: 259 ITNPASFG 266


>gi|169827506|ref|YP_001697664.1| DNA packaging protein Gp17 [Lysinibacillus sphaericus C3-41]
 gi|168991994|gb|ACA39534.1| DNA packaging protein Gp17 (Terminase) [Lysinibacillus sphaericus
           C3-41]
          Length = 529

 Score = 61.9 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 60/235 (25%), Gaps = 20/235 (8%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            ++       N      F   I   R  G +T      LW   T+P  +I+ ++      
Sbjct: 36  EINEAQQEIENLMLENRF-VVIGKARQAGISTFVLARALWRALTKPNENILIVSYKGDSA 94

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           K     E  K ++    R  F       H            +   +          S   
Sbjct: 95  KALF--EKLKQMNDAVPRDKFP------HVFPNVRRDNRSELLFTNGSRI------SSVT 140

Query: 181 PDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
                    +    V   E +     +    S+     +   ++  I T  +   +  FY
Sbjct: 141 AGNKDIGRGSTYTYVHLSEFAFYASQETQLLSVEQSLAKGAESQLTIET-TSNGTSNHFY 199

Query: 239 DIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293
            ++   L+   + +     +      + +     Y       +    G+    + 
Sbjct: 200 RLYMQALK--NKSKYVPYFIPFYHKLYKKQFAHDYDEAERWYKATNGGKRLVSDD 252


>gi|296392503|ref|YP_003657387.1| terminase [Segniliparus rotundus DSM 44985]
 gi|296179650|gb|ADG96556.1| Terminase [Segniliparus rotundus DSM 44985]
          Length = 471

 Score = 61.9 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/346 (10%), Positives = 79/346 (22%), Gaps = 54/346 (15%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
               WQ      +       +   +       +S  R +GKT +    +  L   R G++
Sbjct: 35  GFDEWQDGLGRLMFSKREDGLYACDT----VVVSIPRQVGKTHVMMSALFALCLLRAGLT 90

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           ++  A+     K T  +  +                         A+++      D    
Sbjct: 91  VLWTAHRVKTAKETFGSMAALAARDSV--------------RPLVAQVVRG--RGDEAVL 134

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
            +          +   G        +  DEA    +     +L             M   
Sbjct: 135 FVNGSRILFGAREAGFGRGFADVGVLAFDEAQILGESALDDMLASQNVAENPLTLFM-GT 193

Query: 230 TRRLNGWFYDIFNIPL------------------------EDWKRYQIDTRTVEGIDSGF 265
             R                                     +  +  + +           
Sbjct: 194 PPRPKDPGEAFTMFRQEALDGESEGTLYVELSADRGCDVEDREQWRKANPSYPHRTSERA 253

Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
              +      DS   R E LG + +   +  +  + +  A+  +  +    P  +  D++
Sbjct: 254 MLRLRKNLLEDS--FRREALGVWDEVSTHQAVVKDSVWRALRADGPESSVRPHALVVDMS 311

Query: 326 GEGGDKTVVVFRRGNIIEHIFDWSAKL-------IQETNQEGCPVG 364
                     +  G+       W+          +        PVG
Sbjct: 312 HSREVSVGACWLDGDCAHVEEVWAGVSGSECVEWVAANVGRRVPVG 357


>gi|291484314|dbj|BAI85389.1| hypothetical protein BSNT_02825 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 577

 Score = 61.9 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/336 (13%), Positives = 94/336 (27%), Gaps = 60/336 (17%)

Query: 43  KPLEHFSQPHR---WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99
            P     +P +   +Q   +  +      N         K  IS  R  GK+ L A + L
Sbjct: 65  LPDISTGKPTKLALFQKFIVYMLYAW--RNKETGFRRFTKAYISMARKGGKSVLVAGLSL 122

Query: 100 WLISTRP----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
           + +           I   ANS  Q K   +  +S  L  +  +  F  +   +       
Sbjct: 123 YELIYGEAPKFDRQIYATANSRGQAKTV-FKMISMQLKKIRSKSKFMRKWTKI------- 174

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
             ++  +        I   +   +  D+       + +    DE     +     +L   
Sbjct: 175 --IQNEIRYLKDDCVIMPLSRDTDNLDSL------NVLIGILDEYHTASNTKMMEVLESS 226

Query: 216 TELNPNRFWIMTSNT-----------------------RRLNGWFYDIFNIPLEDWKRYQ 252
                    ++ S                         +    +F  ++    E+    +
Sbjct: 227 QGQQDQGLILIISTAGFKLNGPMYSQEYPYVDDILSGRKENENYFAIVYEQDDEEEIYDE 286

Query: 253 IDT------RTVEGIDSGFHEGIISRYGL-----DSDVARIEILGQFPQQEVNNFIPHNY 301
                      VEG+     + +  +        D +   ++    +      +FI  N 
Sbjct: 287 STWIKSNPLLEVEGLQKKILKNLRKKLKEALDKDDLNGTLVKNFNIWQSASSESFINGND 346

Query: 302 IEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFR 337
            ++     A D    P+ +G D++    D + + F 
Sbjct: 347 WKKRGVDVAPDITGKPVYIGIDLSRT-DDLSALGFI 381


>gi|118475162|ref|YP_891824.1| hypothetical protein CFF8240_0649 [Campylobacter fetus subsp. fetus
           82-40]
 gi|261886523|ref|ZP_06010562.1| hypothetical protein CfetvA_16765 [Campylobacter fetus subsp.
           venerealis str. Azul-94]
 gi|118414388|gb|ABK82808.1| hypothetical protein CFF8240_0649 [Campylobacter fetus subsp. fetus
           82-40]
          Length = 523

 Score = 61.9 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/343 (11%), Positives = 99/343 (28%), Gaps = 45/343 (13%)

Query: 4   LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63
            +S + +  Q +  +      +   +N V +      K +P+ +   P     E  + + 
Sbjct: 62  ELSKNDQTPQGVVMLSELVSALAKLENGVKKVKSIKDKSRPIINMDSPTA--NELKKRIL 119

Query: 64  VHCH----SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
            H +          +   F+  +   R IG + +++   L           + ++ SE Q
Sbjct: 120 EHGNLYAYQKEFLQSNDTFRI-VLKSRQIGFSYVSSADALIGAVAGRDQ--LFLSASEEQ 176

Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
               +                        +   W  E              +    Y + 
Sbjct: 177 ALILM-----------------------RYMRHWAKEYGISFKKDSEHEVVLENGAYIKS 213

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
             + F       G  ++ DE +  P+   I  + +             + S        F
Sbjct: 214 FANNFRTVQGFAGD-IWMDEFAWYPNPKRIWHAFVPSI--GAIKGRLTILSTPFEERSLF 270

Query: 238 YDIFNIPLED--WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN 295
           + I++   +   +KR+ +           F    +     D+D        QF   + ++
Sbjct: 271 HQIYSDKTKFHMFKRFCVSIYKAIEDGLDFDLETMRDLF-DTDTWASAYECQFVD-DESS 328

Query: 296 FIPHNYIEEAMSREAI---DDLYAPLIMGCDIAGEGGDKTVVV 335
            +  + I+  +  +A          +  G D+     D++ + 
Sbjct: 329 LLSISLIKSCVDNKAHYFTPKSSECIYAGYDVGRV-SDRSTLA 370


>gi|296330713|ref|ZP_06873190.1| PBSX defective prophage terminase (large subunit) [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305673970|ref|YP_003865642.1| phage terminase large subunit; PBSZ phage [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296152177|gb|EFG93049.1| PBSX defective prophage terminase (large subunit) [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305412214|gb|ADM37333.1| phage terminase (large subunit); PBSZ phage [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 433

 Score = 61.9 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/304 (11%), Positives = 78/304 (25%), Gaps = 57/304 (18%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
            ++ ++ H   +   +    ++  +  G G  K+   A  ++  +      + + I    
Sbjct: 2   IVKEINPHFE-DYVFNWEQTYQFLV-GGYGSSKSYHTALKIVLKLLK-EKRTALVIREVF 58

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
              +++ +A   + +  L         S  L             +   +    +      
Sbjct: 59  DTHRDSTFALFQEVIEELGLTKAVASLSSPL------------QLRFQNGSRIMFKGM-- 104

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
            + P      H  +   ++ +E S       K ++G           I T+N    + W 
Sbjct: 105 -DNPAKLKSVH--NISLIWIEECSEVKYEGFKELIGRLRHPELKLHMICTTNPVGTSNWT 161

Query: 238 YDIF--------------------NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277
           Y  F                     I   D   +         +   + + +      D 
Sbjct: 162 YRHFFRDERKKRFVLDDRELYEKRTIVKGDTYYHHSTANDNLFLPKSYVKQLDGLKVYDP 221

Query: 278 DVARIEILGQFPQQEVNNF-----------------IPHNYIEEAMSREAIDDLYAPLIM 320
           D+ RI   G+F    +                    I        M     +   A + +
Sbjct: 222 DLYRIARKGRFGVNGIRVLPQFEVLPHGQVKERIAAISKPIFRTGMDFGFEESYNAVVRL 281

Query: 321 GCDI 324
             D 
Sbjct: 282 AVDP 285


>gi|296101689|ref|YP_003611835.1| hypothetical protein ECL_01325 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|296103539|ref|YP_003613685.1| hypothetical protein ECL_03201 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295056148|gb|ADF60886.1| hypothetical protein ECL_01325 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295057998|gb|ADF62736.1| hypothetical protein ECL_03201 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 365

 Score = 61.9 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 59/237 (24%), Gaps = 22/237 (9%)

Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
           +       ++C       L+ +   EV + +  +P              +  +    +  
Sbjct: 1   MMNGESGVVLCAREFMNSLEESSMQEVKQAILSVP------------WLASNFDIGEKYI 48

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221
             ID     + C      R +          +  + DEA    +I  + +     E    
Sbjct: 49  RTIDKSVNYVFC----GLRHNLDSIKSKARILLCWVDEAESVSEIAWQKLSPTVREEGSE 104

Query: 222 RFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL-DSDV 279
             W+   N  R        F     +D    +++                +     D   
Sbjct: 105 -IWVTW-NPERDGSATDKRFRKEAGDDCITVEMNYTDNPWFPDVLEGERQNDQRRLDPAT 162

Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
                 G + +      +   Y   A   + +      L  G D  G   D   +V 
Sbjct: 163 YAWVWEGAYLENSDKQVLAGKY-RIAEFSDQLWKEADRLFFGADF-GFAKDPNTLVR 217


>gi|50914563|ref|YP_060535.1| Phage terminase [Streptococcus pyogenes MGAS10394]
 gi|50903637|gb|AAT87352.1| Phage terminase [Streptococcus pyogenes MGAS10394]
          Length = 476

 Score = 61.9 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/298 (13%), Positives = 79/298 (26%), Gaps = 44/298 (14%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ+  +  +     + +       +       R  GKT +   + LW +    G+ I+ 
Sbjct: 48  PWQVNMLIPIMAIDENGLWVHQKYGYAI----PRRNGKTEVVYIVELWAL--HKGLKILH 101

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            A+  +      + +V K+L M  +                  + +        +     
Sbjct: 102 TAHRISTSH-ASFEKVKKYLEMSGYVD--------------GEDFISNKAKGQERIEFKA 146

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR- 231
                + R  T  G        +  DEA         ++    T+ +     IM      
Sbjct: 147 SGAVIQFRTRTSNGGLGEGFDLLIIDEAQEYTSEQESALKYTVTDSDNPMT-IMCGTPPT 205

Query: 232 --------------------RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271
                               R +GW        ++                      I +
Sbjct: 206 MVSTGTVFEAYRKDCLKGNKRYSGWAEWSVPEMVKINDVSSWYISNPSMGFHLNERKIEA 265

Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329
             G D     I+ LG +P     + I        +  E + +L + L +G     +G 
Sbjct: 266 ELGEDEIDHNIQRLGYWPSFNQKSVISEKEW-AKLKVEQVPELKSKLFVGIKFGQDGN 322


>gi|71911002|ref|YP_282552.1| phage terminase [Streptococcus pyogenes MGAS5005]
 gi|71853784|gb|AAZ51807.1| phage terminase [Streptococcus pyogenes MGAS5005]
          Length = 471

 Score = 61.9 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/298 (13%), Positives = 79/298 (26%), Gaps = 44/298 (14%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ+  +  +     + +       +       R  GKT +   + LW +    G+ I+ 
Sbjct: 43  PWQVNMLIPIMAIDENGLWVHQKYGYAI----PRRNGKTEVVYIVELWAL--HKGLKILH 96

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            A+  +      + +V K+L M  +                  + +        +     
Sbjct: 97  TAHRISTSH-ASFEKVKKYLEMSGYVD--------------GEDFISNKAKGQERIEFKA 141

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR- 231
                + R  T  G        +  DEA         ++    T+ +     IM      
Sbjct: 142 SGAVIQFRTRTSNGGLGEGFDLLIIDEAQEYTSEQESALKYTVTDSDNPMT-IMCGTPPT 200

Query: 232 --------------------RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271
                               R +GW        ++                      I +
Sbjct: 201 MVSTGTVFEAYRKDCLKGNKRYSGWAEWSVPEMVKINDVSSWYISNPSMGFHLNERKIEA 260

Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329
             G D     I+ LG +P     + I        +  E + +L + L +G     +G 
Sbjct: 261 ELGEDEIDHNIQRLGYWPSFNQKSVISEKEW-AKLKVEQVPELKSKLFVGIKFGQDGN 317


>gi|19746414|ref|NP_607550.1| hypothetical protein spyM18_1474 [Streptococcus pyogenes MGAS8232]
 gi|19748615|gb|AAL98049.1| conserved hypothetical phage protein [Streptococcus pyogenes
           MGAS8232]
          Length = 471

 Score = 61.9 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/298 (13%), Positives = 79/298 (26%), Gaps = 44/298 (14%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ+  +  +     + +       +       R  GKT +   + LW +    G+ I+ 
Sbjct: 43  PWQVNMLIPIMAIDENGLWVHQKYGYAI----PRRNGKTEVVYIVELWAL--HKGLKILH 96

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            A+  +      + +V K+L M  +                  + +        +     
Sbjct: 97  TAHRISTSH-ASFEKVKKYLEMSGYVD--------------GEDFISNKAKGQERIEFKA 141

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR- 231
                + R  T  G        +  DEA         ++    T+ +     IM      
Sbjct: 142 SGAVIQFRTRTSNGGLGEGFDLLIIDEAQEYTSEQESALKYTVTDSDNPMT-IMCGTPPT 200

Query: 232 --------------------RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271
                               R +GW        ++                      I +
Sbjct: 201 MVSTGTVFEAYRKDCLKGNKRYSGWAEWSVPEMVKINDVSSWYISNPSMGFHLNERKIEA 260

Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329
             G D     I+ LG +P     + I        +  E + +L + L +G     +G 
Sbjct: 261 ELGEDEIDHNIQRLGYWPSFNQKSVISEKEW-AKLKVEQVPELKSKLFVGIKFGQDGN 317


>gi|21910651|ref|NP_664919.1| putative terminase - phage associated [Streptococcus pyogenes
           MGAS315]
 gi|28876285|ref|NP_795519.1| putative terminase [Streptococcus pyogenes phage 315.3]
 gi|28895661|ref|NP_802011.1| hypothetical protein SPs0749 [Streptococcus pyogenes SSI-1]
 gi|21904853|gb|AAM79722.1| putative terminase - phage-associated [Streptococcus pyogenes
           MGAS315]
 gi|28810910|dbj|BAC63844.1| conserved hypothetical protein (phage associated) [Streptococcus
           pyogenes SSI-1]
          Length = 471

 Score = 61.9 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/298 (13%), Positives = 79/298 (26%), Gaps = 44/298 (14%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ+  +  +     + +       +       R  GKT +   + LW +    G+ I+ 
Sbjct: 43  PWQVNMLIPIMAIDENGLWVHQKYGYAI----PRRNGKTEVVYIVELWAL--HKGLKILH 96

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            A+  +      + +V K+L M  +                  + +        +     
Sbjct: 97  TAHRISTSH-ASFEKVKKYLEMSGYVD--------------GEDFISNKAKGQERIEFKA 141

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR- 231
                + R  T  G        +  DEA         ++    T+ +     IM      
Sbjct: 142 SGAVIQFRTRTSNGGLGEGFDLLIIDEAQEYTSEQESALKYTVTDSDNPMT-IMCGTPPT 200

Query: 232 --------------------RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271
                               R +GW        ++                      I +
Sbjct: 201 MVSTGTVFEAYRKDCLKGNKRYSGWAEWSVPEMVKINDVSSWYISNPSMGFHLNERKIEA 260

Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329
             G D     I+ LG +P     + I        +  E + +L + L +G     +G 
Sbjct: 261 ELGEDEIDHNIQRLGYWPSFNQKSVISEKEW-AKLKVEQVPELKSKLFVGIKFGQDGN 317


>gi|307308946|ref|ZP_07588629.1| hypothetical protein SinmeBDRAFT_4513 [Sinorhizobium meliloti
           BL225C]
 gi|306900580|gb|EFN31193.1| hypothetical protein SinmeBDRAFT_4513 [Sinorhizobium meliloti
           BL225C]
          Length = 408

 Score = 61.5 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 65/199 (32%), Gaps = 22/199 (11%)

Query: 89  GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH--RHWFEMQSL 146
           GKT + A  + W +     + +     SE+ +KN +W+ +    + +    +  F++ + 
Sbjct: 209 GKTYVAAIAVWWSLVCFDDVKVTIFGPSESLIKNGMWSNLQALHARMASSFKDLFDVSAT 268

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
            +            S    +       R  S +      G H  +   VF D+A G  ++
Sbjct: 269 RV------------SRKTAAPSCFAEYRLVSADNASAARGIHAVN-NFVFVDDADGVSEV 315

Query: 207 INKSILGFFTELNPNRF----WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
           +   ++    + NP              +       ++FN  L   +            D
Sbjct: 316 VIAYLMNIMIDPNPKLCLLSTMFANETPKLETVTEAELFNEALSSLRAMVSGEV---RTD 372

Query: 263 SGFHEGIISRYGLDSDVAR 281
             + E I  +      +AR
Sbjct: 373 PVWLEAIRYQLENAEYLAR 391


>gi|253999341|ref|YP_003051404.1| hypothetical protein Msip34_1632 [Methylovorus sp. SIP3-4]
 gi|253986020|gb|ACT50877.1| protein of unknown function DUF264 [Methylovorus sp. SIP3-4]
          Length = 428

 Score = 61.5 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/290 (11%), Positives = 82/290 (28%), Gaps = 34/290 (11%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
            P  +K A+ +G G GK+      +       P +     A +  Q+++  +  + +   
Sbjct: 15  MPQKYK-AMVSGFGTGKSWGGCADLCKHAWEFPRIHSGYFAPTFGQIRDIFYPTIEEV-- 71

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
                  F+                ++      + Y  T    S + P            
Sbjct: 72  ------AFDWG-----MRSKVNSSNKEVHLFAGRVYRGTIICRSMDDPS---QIVGFKIG 117

Query: 194 AVFNDE----ASGTPDIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW 248
               DE    A     +  + I+     +++  +  +  + T     + YD F   + + 
Sbjct: 118 KALIDELDILAKEKAQLAWRKIIARMRYKVDNLQNGVGVTTTPEGFKFVYDQFVKQVREK 177

Query: 249 K--------RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
                     +       + +   +   + + Y     +    + G+F      +    N
Sbjct: 178 PELASLYGLIHASTYDNAKNLPEDYIPSLRASY--PPQLIEAYLRGKFVNLNSGSVYA-N 234

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
           +  +    +A+      L +G D          +   R  +   + + + 
Sbjct: 235 FDRKKNHTDAVMKPGEALHIGMDFNVM-NMTATINVMRDGLPLQVAELTG 283


>gi|171779706|ref|ZP_02920662.1| hypothetical protein STRINF_01543 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281808|gb|EDT47242.1| hypothetical protein STRINF_01543 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 470

 Score = 61.5 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 80/301 (26%), Gaps = 47/301 (15%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ   +++V       +       +       R  GKT +   + LW +    G++I+ 
Sbjct: 42  PWQQNLLKSVMGIEEDGLWTHQKFGYSI----PRRNGKTEIIYMLELWGLYH--GLNILH 95

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            A+  +    + + +V ++L  +                               +     
Sbjct: 96  TAHRISTSH-SSFEKVKRYLEKMGLED--------------GKSFNSIRAKGQERIELYE 140

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232
                + R  T  G        +  DEA         ++    T+ +     IM      
Sbjct: 141 TGGVVQYRTRTSNGGLGEGFDLLVIDEAQEYTTEQESALKYTVTDSDNPMT-IMCGTPPT 199

Query: 233 LNGW--------------------FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE-GIIS 271
                                   + +      ++         +   +    +E  I +
Sbjct: 200 PVSSGTVFTKYRETCLFGRGKYLGWAEWSVSEEKEIDDIDAWYNSNPSMGFHLNERKIEA 259

Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDK 331
             G D     ++ LG +P     + I       A+  + +  L   L +G      G D 
Sbjct: 260 ELGEDKLDHNVQRLGYWPTYNQKSAISETEWN-ALKIDDLPQLQGQLFVGI---KYGQDG 315

Query: 332 T 332
           T
Sbjct: 316 T 316


>gi|157168375|ref|YP_001456732.1| gp2, terminase [Corynebacterium phage BFK20]
 gi|74268807|emb|CAB93907.2| gp2, terminase [Corynebacterium phage BFK20]
          Length = 542

 Score = 61.5 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/372 (12%), Positives = 89/372 (23%), Gaps = 52/372 (13%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           M R        E  +    +      +   F +  F   I G  L        WQ  F  
Sbjct: 1   MERDGKLYGDTEPRIFTPPLAELTRENSLGFEVIDFAREILGIEL------RPWQEWFF- 53

Query: 61  AVDVHCHSNVNNSNPTIFK-CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
            +         N     F+   +  GR  GKT +   + LW +    G S I  A  +  
Sbjct: 54  -IHALELDPEKNYEDFRFRQLVLLVGRQNGKTLVMVILGLWKLFI-DGCSEIVTAAQDLS 111

Query: 120 LKNTLWAEVSKWLSMLPH-RHWFEMQSLSLHPSGWYAEL---LEQSMGIDSKHYTITCRT 175
           +     +         P    W   +        +        +  +        +    
Sbjct: 112 VAEATLSNAFMLAKANPDLNQWLPWRMERGEMVPFMRTANGSNQIELAYAPVPEALDVFG 171

Query: 176 YSEE---RPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTEL------------- 218
              +         G  +        DE     D     +I     E              
Sbjct: 172 AMPKWFVVATNRGGGRSHSAELAMLDELREHTDFQSWGAITPAVAERPRNQVYGFSNAGD 231

Query: 219 ------NPNRFWIMTSNTRRLNGWFY---DIFNIPLEDWKRYQIDT-RTVEGIDSGFHEG 268
                    R   +   +  +          ++ P E     +         +  G  + 
Sbjct: 232 EKSVVLRKQRNICLKEISDGITDQSQLAIFEWSAPEECSIFDRDGWAAANPSLGYGNRDE 291

Query: 269 II-----------SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317
                             D ++ RIE L Q+ +      +  +  +     ++  D  AP
Sbjct: 292 KTMLSLARAALDPEDDEADENLFRIEYLCQWVKTLEQGKVKRDTWDALKDSDSRRDEDAP 351

Query: 318 LIMGCDIAGEGG 329
           + +  D+  +G 
Sbjct: 352 IEVAVDVDVDGR 363


>gi|326385269|ref|ZP_08206932.1| putative phage terminase protein [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326196012|gb|EGD53223.1| putative phage terminase protein [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 439

 Score = 61.1 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 55/201 (27%), Gaps = 30/201 (14%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST-RPGMSII 111
            WQ+   + +     S             ++  R  GKT L A +ML  +     G  + 
Sbjct: 11  PWQILAADLIGECDASGRLIHPL----VVVTVPRQSGKTALLAAVMLHRLIMLGEGGRVW 66

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A +  + +  +W  +                            L++   G       +
Sbjct: 67  YTAQTGIKAREQMWEMMDAI------------------DRSALGPLIKSKRGAGDTSMEL 108

Query: 172 TCRTYSEE-RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF-----TELNPNRFWI 225
                  +  P T    H         DEA    +     ++G       T  N     I
Sbjct: 109 LGTGARAKMHPPTPDSLHGNQSDLNVIDEAWFFDEPQAHGLMGAITPTQSTRPNAQTIII 168

Query: 226 MTSNTRRLNGWFYDIFNIPLE 246
            T+ T     WF+D+     +
Sbjct: 169 STAGTAESV-WFHDLVARGHD 188


>gi|254240379|ref|ZP_04933701.1| hypothetical protein PA2G_01026 [Pseudomonas aeruginosa 2192]
 gi|126193757|gb|EAZ57820.1| hypothetical protein PA2G_01026 [Pseudomonas aeruginosa 2192]
          Length = 433

 Score = 61.1 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/277 (11%), Positives = 74/277 (26%), Gaps = 33/277 (11%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           AG G GKT +    +       P ++    A +  Q+++  +  + +             
Sbjct: 28  AGFGSGKTWVGCSGLAQHAWEWPRINAGYFAPTYAQIRDIFYPTMEEVA----------- 76

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
                   G    + + +  +     +    T      +               DE    
Sbjct: 77  -----FDWGLRTRINQANHEVHLFSGSAYRTTIICRSMEKPQTIVGFKVGRSLVDELDVL 131

Query: 204 P----DIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIF-------NIPLEDWKRY 251
                    + I+     +++  R  +  + T     + +  F           + +   
Sbjct: 132 SLVKAQQAWRKIIARMRYKVDGLRNRVDVTTTPEGFKFVFQQFVKQLREKPHLQDLYGLV 191

Query: 252 QIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
           Q  T   E  +   + + ++  Y     +    + GQF            Y     +   
Sbjct: 192 QASTYDNEANLPDDYIDSLMESY--PPQLIAAYLRGQFVNLTSGTIYT-AYDRTLNASPE 248

Query: 311 IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
                 P+ +G D    G    VV  +R  +   + +
Sbjct: 249 TVQPGEPIYVGMDF-NVGKMAAVVHVKRLGLPHAVDE 284


>gi|212715964|ref|ZP_03324092.1| hypothetical protein BIFCAT_00876 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661331|gb|EEB21906.1| hypothetical protein BIFCAT_00876 [Bifidobacterium catenulatum DSM
           16992]
          Length = 477

 Score = 61.1 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/293 (10%), Positives = 65/293 (22%), Gaps = 48/293 (16%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
               WQ  F+  +                   +S+ R IGKT      +  L + R    
Sbjct: 37  HFDLWQKGFLYLL--FGKRADGKYACGSGGAVLSSCRQIGKTFTVGNAIFILCAGRANTL 94

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           +I  A+       T         +            L+ +         +Q +   +   
Sbjct: 95  VIWTAHHTRTSDETFADMCDMTHNP----------KLARYVENVRRANGQQEIRFTNGSR 144

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
            +          +   G           DEA         +++             M  N
Sbjct: 145 IMFGA------RENGFGRGLHSADIEVFDEAQILTVKALDNLIPIVNTSPNPLVVFM-GN 197

Query: 230 TRRLNGWFYDIFNIPLE-------------------------DWKRYQIDTRTVEGIDSG 264
             +      + F    +                              + +    +     
Sbjct: 198 PPKPGDQS-EAFGEKRDLALGGDAEGMLYVELAADRDADSDDREAWAKANPSYPKRTSEQ 256

Query: 265 FHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317
               + +    DS   R E LG + +      I     +++     + D   P
Sbjct: 257 AIMRMRNLLAEDS--FRREALGIWDEHVAVRAIDPKLWKQS-ETMQVPDGGIP 306


>gi|187939660|gb|ACD38803.1| phage terminase large subunit [Pseudomonas aeruginosa]
 gi|187939739|gb|ACD38880.1| hypothetical phage protein [Pseudomonas aeruginosa]
          Length = 431

 Score = 61.1 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/277 (11%), Positives = 77/277 (27%), Gaps = 33/277 (11%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           AG G GKT +    +       P ++    A +  Q+++  +  + +             
Sbjct: 23  AGFGSGKTWVGCSGLAQHAWEWPRINAGYFAPTYAQIRDIFYPTMEEVA----------- 71

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
                   G   ++ + +  +     +    T      +               DE    
Sbjct: 72  -----FDWGLRTKINQANHEVHLYSGSAYRTTIICRSMEKPQTIVGFKVGRSLVDELDVL 126

Query: 204 P----DIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIF-------NIPLEDWKRY 251
                    + I+     +++  R  +  + T     + +  F           + +   
Sbjct: 127 SLIKAQQAWRKIIARMRYKVDGLRNRVDVTTTPEGFKFVFQQFVKQLREKPHLQDLYGLV 186

Query: 252 QIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
           Q  T   E  +   + + ++  Y     +    + GQF            Y  +  + + 
Sbjct: 187 QASTYDNEANLPDDYIDSLMDSY--PPQLIAAYLRGQFVNLTSGTIYT-AYDRKLNASQE 243

Query: 311 IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
                 P+ +G D    G    VV  +R  +   + +
Sbjct: 244 TVQPGEPIYVGMDF-NVGKMAAVVHVKRLGLPHAVDE 279


>gi|160915221|ref|ZP_02077434.1| hypothetical protein EUBDOL_01229 [Eubacterium dolichum DSM 3991]
 gi|158433020|gb|EDP11309.1| hypothetical protein EUBDOL_01229 [Eubacterium dolichum DSM 3991]
          Length = 444

 Score = 61.1 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/256 (12%), Positives = 72/256 (28%), Gaps = 27/256 (10%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH-RH 139
            +++GR   K++  A M  +LI +    + + +     +L+ T++ E  + +  L   + 
Sbjct: 31  ILTSGRAGTKSSAMAIMADFLIVSEDDSAAVIMRKHHNKLRKTVYQECVRAIGRLGLSKK 90

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
            F +    +             +       TI             +     H   V  DE
Sbjct: 91  HFTITRSPM------------QITYKKNGNTIYFTGSDSIDDTKGMIDEKNHIRLVVLDE 138

Query: 200 ASGT------PDIINKSILGFFTELNPNRFWIMTSNTRR----LNGWFYDIFNIPLEDWK 249
            +         D I   +  F    + +   +   N  +        +        +   
Sbjct: 139 LTEFFDKGEGEDEILNIVATFVRGNDEDFRMMYLYNPPKNPKAPVNEWCRKMEQRADCIH 198

Query: 250 RYQIDTRTVE--GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
               D R V    +     +   +    D  + R   LG+      +        E  + 
Sbjct: 199 -IHTDYRDVPMKWLGRKLIDEAEAMKLADFKMYRWIWLGE-AVGLDDLIYYMFDEEHHVR 256

Query: 308 REAIDDLYAPLIMGCD 323
           +   +D      +G D
Sbjct: 257 KTNSEDNITLYGVGVD 272


>gi|290513013|ref|ZP_06552377.1| hypothetical protein HMPREF0485_04781 [Klebsiella sp. 1_1_55]
 gi|289774626|gb|EFD82630.1| hypothetical protein HMPREF0485_04781 [Klebsiella sp. 1_1_55]
          Length = 435

 Score = 61.1 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 85/301 (28%), Gaps = 34/301 (11%)

Query: 61  AVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
           A+    +           K  A  AG G GKT +    +       P ++    A +  Q
Sbjct: 2   AIAPTLNVPQARFLAMQQKFKAYVAGFGSGKTWVGCGGICKGFWEFPKINQGYFAPTYPQ 61

Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
           +++  +  V +                         E  ++      + Y  T    S E
Sbjct: 62  IRDIFYPTVEEVAHDWG-------------LKVKIVESNKEVHFYSGRQYRGTTICRSME 108

Query: 180 RPDTFVGPHNTHGMAVFNDEA----SGTPDIINKSILGFFT-ELNPNRFWIMTSNTRRLN 234
           +PDT              DE     +       + I+     +++  R  I  + T    
Sbjct: 109 KPDT---IVGFKIGNALVDELDVLKADKARQAWRKIIARMRYKVDGLRNGIDVTTTPEGF 165

Query: 235 GWFYDIFNIP-------LEDWKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILG 286
            + Y+ F             +   Q  T   E  +   +   +++ Y    ++ +  + G
Sbjct: 166 KFVYNQFVKAVREKPELRSMYGLVQASTFDNEKNLPDDYIPSLLASY--PPELIKAYLNG 223

Query: 287 QFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
           QF            +     +    +     L +G D    G    +V   R  +   + 
Sbjct: 224 QFTNLTSGTIYHQ-FDRVLNNSSEEEQPGEALYIGMDF-NVGKMAGIVHVLRLGLPHAVT 281

Query: 347 D 347
           +
Sbjct: 282 E 282


>gi|166031465|ref|ZP_02234294.1| hypothetical protein DORFOR_01162 [Dorea formicigenerans ATCC
           27755]
 gi|166028870|gb|EDR47627.1| hypothetical protein DORFOR_01162 [Dorea formicigenerans ATCC
           27755]
          Length = 670

 Score = 61.1 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 66/245 (26%), Gaps = 19/245 (7%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
             GRG  K++  +  ++ LI     M  + +      ++ +++ +V   +  L     F+
Sbjct: 290 PGGRGSTKSSFVSLNIIDLIMKNSEMHAVVMRQVADTMRGSIYQQVKWAIDALGLSEEFD 349

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
                L             +   S    I  R   +      +     +   ++ +E   
Sbjct: 350 ATVSPL------------EITRKSTGQKIYFRGADDPGKVKSIKVPFGYIGILWLEELDQ 397

Query: 203 TP-DIINKSILGFFTELNPNRFWIMTSNTRRL-NGWFYDIFNIPLEDWKRYQIDTRTVE- 259
                  + I           +   T N  +  + W      IP       +     +  
Sbjct: 398 FTGPESVRKIEQSVIRGGDVAYIFKTFNPPKSASNWANKYIKIPKATRLVTESTYLDIPQ 457

Query: 260 -GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
             +   F +        + D    E LG  P     +   +  I      +     +  +
Sbjct: 458 KWLGKPFIDEAQFLKETNPDAYENEYLGV-PNGSGGSVFDNLVIRA--ITDEEIAQFDNI 514

Query: 319 IMGCD 323
             G D
Sbjct: 515 KNGVD 519


>gi|281417138|ref|ZP_06248158.1| conserved hypothetical protein [Clostridium thermocellum JW20]
 gi|281408540|gb|EFB38798.1| conserved hypothetical protein [Clostridium thermocellum JW20]
          Length = 526

 Score = 61.1 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/252 (13%), Positives = 74/252 (29%), Gaps = 37/252 (14%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
            N   +   I   R IG +TL   ++L+        +++ +A++E      L+  +    
Sbjct: 47  DNMDRYNI-ILKPRQIGFSTLLLGLILYYCFQFENYNVLLLAHTEDTT-QYLFTRLKLMY 104

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
             +P ++              + +  E  + +++       RT S  +            
Sbjct: 105 ESIPDKY-----------RIGFRKNNEMELFLENNSRIAV-RTASASKGQGIG--RGYSL 150

Query: 193 MAVFNDEASGTPDIINKSILGFFTEL--NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250
             +   E +   + I   IL              I   +T +    FYD+F         
Sbjct: 151 NLIHLSEFAYYDEKIQDVILSSIENSLVKNENSRIFIESTAKGLNHFYDLFK------DS 204

Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
              ++R      + F E +  +Y             QF  +    +     I+     E 
Sbjct: 205 MAGNSRYKPFFYNWFCESMKKQY-------------QFEYELAKQWYKKGIIKHLTDDEM 251

Query: 311 IDDLYAPLIMGC 322
            +       +G 
Sbjct: 252 DETEKKLYALGA 263


>gi|317499861|ref|ZP_07958099.1| pbsx family Phage terminase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316898763|gb|EFV20796.1| pbsx family Phage terminase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 428

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/253 (11%), Positives = 64/253 (25%), Gaps = 39/253 (15%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           +  G G  K+   A  ++  +        + +      ++++ +  + +    +    + 
Sbjct: 27  LVGGYGSSKSYHVAVKLIKKLLE-EKRKALVVREVFDTIRDSCYDLLQEVAEAMGVDGYL 85

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
              S  +             +   +    I                       V+ +E S
Sbjct: 86  TFTSSPM------------QVKFSNGSRIIFKGMDKPA-----KLKSLNGVSIVWIEECS 128

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE--------------- 246
                  K ILG       +   I+++N      W Y  F    +               
Sbjct: 129 EVKYAGFKEILGRLRHPTLSNHIILSTNPVSKGNWCYKYFFQDKKKKVFVLDDEKLYKER 188

Query: 247 -----DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301
                +   +         +   + E +      D D+ R+   G+F     +   P   
Sbjct: 189 TVVVGNTYYHHSTVDDNFFVPKEYVEQLDDLQTHDPDLYRVARQGRF-GVNGSLVFPQFV 247

Query: 302 IEEAMSREAIDDL 314
           +E A   E     
Sbjct: 248 VEPANQVEKEIKA 260


>gi|33594269|ref|NP_881913.1| putative phage terminase [Bordetella pertussis Tohama I]
 gi|33564344|emb|CAE43647.1| putative phage terminase [Bordetella pertussis Tohama I]
 gi|332383682|gb|AEE68529.1| putative phage terminase [Bordetella pertussis CS]
          Length = 425

 Score = 60.7 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/259 (10%), Positives = 65/259 (25%), Gaps = 25/259 (9%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
            P  F+  + AG G GKT +    +       P ++    A +  Q+++  +  + +   
Sbjct: 14  LPHKFRAFV-AGFGSGKTWVGGAGLCRHAWEFPRVNSGYFAPTYGQIRDIFYPTIEEVAH 72

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
                      +  +H                 K   I      +   D           
Sbjct: 73  DWGLAAKINESNKEVHLFAGRKYRGTVICRSMEKPGDIVGFKIGKGLIDELDVMKADKAA 132

Query: 194 AVFNDEASGTPDIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK--- 249
                          + I+             +  + T     + Y  F   + +     
Sbjct: 133 LA------------WRKIIARLRHTAPGLLNGVDVTTTPEGFKFVYQQFVKQVRERPELA 180

Query: 250 -----RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE 304
                         + +   +   + + Y     +    + GQF      +    N+   
Sbjct: 181 ALYGLVQASTYENGKNLPEDYIPSLRASY--PPQLIAAYLRGQFTNLTSGSVYA-NFDRR 237

Query: 305 AMSREAIDDLYAPLIMGCD 323
               +A ++ +  L +G D
Sbjct: 238 LHHTDAAEEPHEELHIGMD 256


>gi|308172469|ref|YP_003919174.1| phage terminase, large subunit, pbsx family [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605333|emb|CBI41704.1| phage terminase, large subunit, pbsx family [Bacillus
           amyloliquefaciens DSM 7]
          Length = 424

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/270 (11%), Positives = 80/270 (29%), Gaps = 27/270 (10%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  +  GRG  K+T     ++  +   P  + + +      L  +++ ++ + + +L   
Sbjct: 29  RYVLKGGRGSSKSTHIGTRIVNDMMKYPVST-LVVRKVANTLGESVFEQLKEAIDLLGVG 87

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
            ++ +    +  +               +  +I  R   +      +         ++ +
Sbjct: 88  EYWHVNKSPMRLT------------YKPRGNSIIFRGADDPAKIKSLKIAKFPVAFLWVE 135

Query: 199 EAS------GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP--LEDWKR 250
           E +          I N  +     +     F+   +  +R   W    +      ++   
Sbjct: 136 ELAEFKLEEEISMIENSVLRAELPDGLFYAFYYSYNPPKRKQSWVNKKYESSFVPKNTYI 195

Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN--YIEEAMSR 308
           +         I   F E        +    R E LG+      +  +P +   IE     
Sbjct: 196 HHSTYLENPYISKAFKEEAEIVKERNPLKYRWEYLGE---ALGSGVVPFDNLKIENGCIT 252

Query: 309 EAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
           + +   +  +  G D  G G D    V   
Sbjct: 253 DEMVRSFDNIRQGVDF-GYGPDPLAYVRWH 281


>gi|227534164|ref|ZP_03964213.1| large subunit terminase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227188204|gb|EEI68271.1| large subunit terminase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 432

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/257 (12%), Positives = 72/257 (28%), Gaps = 14/257 (5%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
                 RG  K+   A  ++  I   P ++ I +       K++ ++ + +  + L    
Sbjct: 28  LTYKGSRGSRKSFSVAEDVIMQIILHPYVNWIVLRQYAYTNKDSTYSTIQQAANRLGVYE 87

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
            F+     L  +           G+D      + +  +      +             D 
Sbjct: 88  LFKFTLSPLEITFKPTGQKVFFRGMDKPLAVTSLQPTTGVLARAWWE---EAYELKSLDA 144

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NIPLEDWKRYQIDTR 256
                +    ++ G   + +     I+T N      W    F   +      K +     
Sbjct: 145 FKTVEE----TMRGEIDDPDGYYQSIITFNPWSDQHWLKREFFDQDTKNPRSKSFTTTYE 200

Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA 316
               +D  +   +      + + AR+ + G +            + +   S    D    
Sbjct: 201 DNPYLDDDYIASLKDMVKRNPNRARVAVYGDW-GIAEGLVFDGLFEQRDFS--MEDIAAL 257

Query: 317 PLIMGCDIAGEGGDKTV 333
           P  +G D  G   D T 
Sbjct: 258 PKAVGLDF-GFKHDPTA 273


>gi|323703887|ref|ZP_08115520.1| hypothetical protein DesniDRAFT_2732 [Desulfotomaculum nigrificans
           DSM 574]
 gi|323531136|gb|EGB21042.1| hypothetical protein DesniDRAFT_2732 [Desulfotomaculum nigrificans
           DSM 574]
          Length = 525

 Score = 60.3 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/365 (10%), Positives = 84/365 (23%), Gaps = 104/365 (28%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
            +     + + N++  N       IS  R +G TT +    LWL  TRP  + + ++ + 
Sbjct: 40  ILNEQQEYFYQNMDKFN------IISKSRQLGFTTYSLAYCLWLACTRPNTNCLIVSYNV 93

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
                +++  + +  + +P ++                      + +++    I      
Sbjct: 94  EST-QSIFERLKQMFASIPDKY-----------KPAERRNNRMELYLENNSRIIV----- 136

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF--TELNPNRFWIMTSNTRRLNG 235
            +               +   E +  PD   K  L              I+   T     
Sbjct: 137 -KTAGVKSLGRGMTLQYILLSEFAFYPDDQQKDSLVSLEQALAKNEDSKIVIETTSNGYN 195

Query: 236 WFYDIFNIPLE---DWKRYQIDTR----------------------TVEGIDSGFHEGII 270
           ++  +F    +    +K +                                         
Sbjct: 196 YYQKLFMSAYKGNSKYKAFFFPWYSSATSNQFKHEIDLAEKWFRLNNHGHRMRPEDLERD 255

Query: 271 SRYGLDSD-----VARIEIL----------GQFPQQEVNNF-------IPHNYIEEAMSR 308
                +       +                 +FP     +F            I E ++ 
Sbjct: 256 EIPLREKGISFKLLMWRRWKLEDISIEDFNQEFPSTPEESFKATSRSVFDTQKITERLNY 315

Query: 309 EAID----------------------------DLYAPLIMGCDIA-GEGGDKTVVVFR-- 337
                                                  +G D A G GGD + +     
Sbjct: 316 ILPPLSRADIKKELPFSLDQYLGKGFFIYQNVKANERYYIGVDTASGNGGDYSAISVFDS 375

Query: 338 RGNII 342
           +G  +
Sbjct: 376 QGEQV 380


>gi|296444753|ref|ZP_06886716.1| Terminase [Methylosinus trichosporium OB3b]
 gi|296257701|gb|EFH04765.1| Terminase [Methylosinus trichosporium OB3b]
          Length = 531

 Score = 60.3 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 47/318 (14%), Positives = 86/318 (27%), Gaps = 57/318 (17%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR---PGM 108
             WQ   +  V   CH +       +    +   RG  KT+L A + L         PG 
Sbjct: 47  TPWQERIVRRVYGPCHPDGRR---IVRNVVMLLPRGNRKTSLGAGLGLLHAIGPERIPGG 103

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
             +  A+   Q +   + E +            E    +L    +   +     G   + 
Sbjct: 104 LALFAASDGEQAR-IAFEEAAAICR------EDERIEKALRFIDYRHRIEHPKSGASLRA 156

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP-DIINKSILGFFTELNPNRFWIMT 227
            +                 H +       DE    P   +   +     +   +   ++T
Sbjct: 157 ISCDAA-----------RQHGSTPTFALVDELHAWPKRDLWDVLRTGLVKTPGSLLVVIT 205

Query: 228 SNTRRLNGWFYDIFNIPLE----------------------DWKRYQIDTRTVEGIDSGF 265
           +  R      Y+I +   +                      DW+   I  R   G+  GF
Sbjct: 206 TAGRGQQNVAYEIVDYARKVARGEIEDPGTLPILFETAADADWRDEGIWRRANPGLAQGF 265

Query: 266 --------HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYA 316
                             D +  +   L  +    V+ F+     +E     +       
Sbjct: 266 PDIEGLRQLAREAEARPADREAFKQLHLNVWLDHSVDPFVDMQIYDEGAEPLDLEALADE 325

Query: 317 PLIMGCDIAGEGGDKTVV 334
           P  +G D++    D TVV
Sbjct: 326 PCYLGVDLS-SNSDLTVV 342


>gi|295111846|emb|CBL28596.1| Mu-like prophage FluMu protein gp28 [Synergistetes bacterium SGP1]
          Length = 532

 Score = 60.0 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 89/293 (30%), Gaps = 40/293 (13%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
            + ++ +  +  S + +   + F+  + + R IG + L    +L     R    I+  A+
Sbjct: 123 EKALDKLYAYQRSFLLDD--SRFRVCLKS-RQIGFSFLLGLEVLLGAIERGDNQIVISAS 179

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
            +    + +     KW   L                       +     D  +       
Sbjct: 180 QDQS--DIVRNYAVKWCKDL-----------------------DVDYLEDGGNIIFPGGA 214

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEAS--GTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233
            +   P          G  V+ DE +      ++ ++ +   T         +TS     
Sbjct: 215 IAYFLPCNPRTVQGYTGD-VYLDEFAWHMRGRLMWQAAVPAATTKGKRL--TVTSTPYTE 271

Query: 234 NGWFYDIFNIPLE--DWKRYQIDTRT-VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290
              F +I   P +   + R+ +     V+       E +   +  D+         +F  
Sbjct: 272 TDMFGEIVTNPDKYPRFSRHTVTIYDAVKDGHQVDIEELRGLF--DAITFAQAYECRFFA 329

Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIE 343
            E+    P + +   +  + +  + A +  G DI     D T +V      +E
Sbjct: 330 DELCLLQP-DEVRAVLDDDCLRHVSAWVNGGVDIGRT-KDVTAIVLAEQLQVE 380


>gi|327197586|ref|YP_004301277.1| gp2 [Brochothrix phage NF5]
 gi|296245409|gb|ADH03023.1| gp2 [Brochothrix phage NF5]
          Length = 425

 Score = 60.0 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/291 (12%), Positives = 80/291 (27%), Gaps = 31/291 (10%)

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
             I       GRG GK++  A  ++  +  R  ++ + I   +  L+ +L+ ++   +  
Sbjct: 23  EQILNIVCKGGRGSGKSSDIA-HVITQLLMRYAVNAVGIRYVDNTLEQSLYEQMKWAIEQ 81

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
               H F+     L             +    +   +  R          +         
Sbjct: 82  QGVTHLFKFNKSPLR------------ITYIPRGNYMIFRGAQNPERIKSLKDSKFPFAI 129

Query: 195 VFNDE-ASGTPDIINKSILGFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLE 246
            + +E A    +    +I                +  + N   R   W    +      E
Sbjct: 130 GWIEELAEFKNEEEVTTITNSLLRGELGNGLFYKFFYSYNPPKRKQSWVNKKYETSFQPE 189

Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN--YIEE 304
           +   +    +    I   F + + +    +   A  E  G+         +P +   +  
Sbjct: 190 NTFVHHSTYKDNPFIAKEFLKEVEAARERNPRRAEWEYDGKAIGSG---VVPFDNLKVVA 246

Query: 305 AMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR----GNIIEHIFDWSAK 351
               + +   +  +    D  G   D    V        N I  I ++  +
Sbjct: 247 GSITDDMTANFDNVRNAVDF-GYATDPLAFVRWHYDKKHNCIYAIEEYFGQ 296


>gi|284164527|ref|YP_003402806.1| hypothetical protein Htur_1243 [Haloterrigena turkmenica DSM 5511]
 gi|284014182|gb|ADB60133.1| hypothetical protein Htur_1243 [Haloterrigena turkmenica DSM 5511]
          Length = 514

 Score = 60.0 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 71/259 (27%), Gaps = 31/259 (11%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            A  AG G GK+ L A  +L      P    + +    T+ +++ +  +      LP   
Sbjct: 79  VAFLAGYGSGKSILGARWLLAQALAHPDSRFLAMGVDFTKARDSTFRIL---CEQLPGAR 135

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                     P                +              D++         A++ DE
Sbjct: 136 TALRTGTINGPESSPIVADF--NRGAHRLTLTNGSVIVLGAADSWNRYAGDEFGAIWLDE 193

Query: 200 ASGTP---DIINKSILGFFTELNPNRF--WIMTSNTRRLNGWFYDIFNIPLED------- 247
            S        + + + G    +   +   W +T N        ++I     +        
Sbjct: 194 PSHYETDLHDLLEMLGGRLRGVAGPKVQCWTLTGN---GYNDAWEILEQRQDSTGDPIGL 250

Query: 248 -WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE---------VNNFI 297
             +  +  T     +D+G       R   D+D     + G F   +           + I
Sbjct: 251 AIELVRASTLDNPYLDAG-TRERYERQFGDTDREAQALRGGFAAAQGLVYTKFSRDTHVI 309

Query: 298 PHNYIEEAMSREAIDDLYA 316
           PH    + +  +     Y 
Sbjct: 310 PHAAATDRVIADWRVYGYD 328


>gi|257891069|ref|ZP_05670722.1| terminase large subunit [Enterococcus faecium 1,231,410]
 gi|257893878|ref|ZP_05673531.1| terminase large subunit [Enterococcus faecium 1,231,408]
 gi|260558861|ref|ZP_05831050.1| terminase large subunit [Enterococcus faecium C68]
 gi|257827429|gb|EEV54055.1| terminase large subunit [Enterococcus faecium 1,231,410]
 gi|257830257|gb|EEV56864.1| terminase large subunit [Enterococcus faecium 1,231,408]
 gi|260075320|gb|EEW63633.1| terminase large subunit [Enterococcus faecium C68]
          Length = 432

 Score = 60.0 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/275 (12%), Positives = 75/275 (27%), Gaps = 27/275 (9%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
           N  I       GRG GK++  A  ++  +  R  ++ + I   +  L+ +L+ ++   + 
Sbjct: 22  NQDILNIVCKGGRGSGKSSDIA-HIVTQLLMRYAVNAVGIRYVDNTLEQSLYEQMKWAIE 80

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
                H F+     L             +    +   +  R          +        
Sbjct: 81  QQGVSHLFKFNKSPLK------------ITYLPRGNYMIFRGAQNPERIKSLKDSKFPFA 128

Query: 194 AVFNDE-ASGTPDIINKSILGFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFNIPLED 247
             + +E A    +    +I                +  + N   R   W    +    + 
Sbjct: 129 IGWIEELAEFKTEDEVTTITNSLLRGELDDGLFYKFFYSYNPPKRKQSWVNKKYETSFQP 188

Query: 248 WKRY--QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN--YIE 303
              +      +    I   F   + +    +   A  E  G+         +P +   IE
Sbjct: 189 KNTFIHHSTYKDNPFISKEFLSEVEAARARNPRRAEWEYDGKAIGSG---VVPFDNLRIE 245

Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
                + +   +  +  G D  G   D    V   
Sbjct: 246 AGSITDEMVANFDNIRQGLD-YGYATDPLAFVRWH 279


>gi|224541923|ref|ZP_03682462.1| hypothetical protein CATMIT_01096 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525157|gb|EEF94262.1| hypothetical protein CATMIT_01096 [Catenibacterium mitsuokai DSM
           15897]
          Length = 419

 Score = 60.0 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 69/278 (24%), Gaps = 25/278 (8%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
               V  H  +N            +  GRG  K++     +   I       ++  A   
Sbjct: 15  AFYEVHKHVKNNDYTHY------WLKGGRGSLKSSFIGVEIPLGIMRDAQRGVMSNAVIM 68

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
            ++K+TL   V + +    ++   +          W     +  M        I  +   
Sbjct: 69  RRVKDTLRDSVYEQIKWGIYKLGAQ--------DDWLIPESKLKMTYMPTGQQIIFKGAD 120

Query: 178 EERPDTFVGPHNTHGMAVF---NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
           E +       H  +   V+    DE      I N  I               + N     
Sbjct: 121 EPKKMKSTKVHIGYVKYVWYEECDEFETYDKITN--INQSLLRGGHEYCVFYSFNPPESQ 178

Query: 235 -GWFYDIFNIPLEDWKRYQIDTRTVE--GIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
             W      +  +D               +   F          + +    + LG+    
Sbjct: 179 RNWCNRQVLVKRDDTYVSHTTYLQAPPEWLGEQFLIEAEHTKKTNIEKYNHDYLGEVTGT 238

Query: 292 EVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329
               F   +  E     +   D++  L  G D    G 
Sbjct: 239 GSEVFTNLDIRE---ITKEEIDVFDRLKFGLDFGYAGD 273


>gi|152989642|ref|YP_001347771.1| hypothetical protein PSPA7_2404 [Pseudomonas aeruginosa PA7]
 gi|150964800|gb|ABR86825.1| hypothetical protein PSPA7_2404 [Pseudomonas aeruginosa PA7]
          Length = 436

 Score = 60.0 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/277 (11%), Positives = 77/277 (27%), Gaps = 33/277 (11%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           AG G GKT +    +       P ++    A +  Q+++  +  + +             
Sbjct: 28  AGFGSGKTWVGCSGLAQHAWEWPRINAGYFAPTYAQIRDIFYPTMEEVA----------- 76

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
                   G   ++ + +  +     +    T      +               DE    
Sbjct: 77  -----FDWGLRTKINQANHEVHLYSGSAYRTTIICRSMEKPQTIVGFKVGRSLVDELDVL 131

Query: 204 P----DIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIF-------NIPLEDWKRY 251
                    + I+     +++  R  +  + T     + +  F           + +   
Sbjct: 132 SLVKAQQAWRKIIARMRYKVDGLRNRVDVTTTPEGFKFVFQQFVKQLREKPHLQDLYGLV 191

Query: 252 QIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
           Q  T   E  +   + + ++  Y     +    + GQF            Y     + + 
Sbjct: 192 QASTYDNEANLPDDYIDSLMESY--PPQLIAAYLRGQFVNLTSGTIYT-AYDRTLNASQE 248

Query: 311 IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
           +     P+ +G D    G    VV  +R  +   + +
Sbjct: 249 MVQPGEPIFVGMDF-NVGKMAAVVHVKRMGLPHAVDE 284


>gi|327331008|gb|EGE72751.1| hypothetical protein HMPREF9338_01045 [Propionibacterium acnes
           HL096PA2]
          Length = 503

 Score = 60.0 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 46/343 (13%), Positives = 97/343 (28%), Gaps = 45/343 (13%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
            +   P  WQ + ++       +    S      C +   R  GK  +   + L+  + +
Sbjct: 32  AYGLTPDPWQQQVLDDWLAVGSNGRLASGV----CGVFVPRQNGKNAILEVVELFKATIQ 87

Query: 106 PGMSIICIANSETQLKNTLWAE--VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
            G  I+  A+     +          +     P  +   ++S+          L      
Sbjct: 88  -GRRILHTAHELKSARKAFMRLRSFFENERQFPDLYR-MVKSIRATNGQEAIVLHHPDCA 145

Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT-ELNPNR 222
              K          E    +           +  DEA    D   +++L   +   + + 
Sbjct: 146 TFEKKCGCPGWGSVEFVARSRGSARGFTVDDLVCDEAQELSDEQLEALLPTVSAAPSGDP 205

Query: 223 FWIMTSNTR------------------RLNGWFYDIFNIPLE--------DWKRYQIDTR 256
             I                            + +  F+IP E         W++   DT 
Sbjct: 206 QQIFLGTPPGPLADGSVVLRLRGQALGGGKRFAWTEFSIPDESDPDDVSRQWRKLAGDTN 265

Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ-EVNNFIPHN-YIEEAMSREAIDDL 314
              G    F         + +     E LG + +    ++ IP + +++ A+   A+   
Sbjct: 266 PALGRRLNFGTVSDEHESMSAAGFARERLGWWDRGQSASSVIPADKWVQSAVGEAALV-- 323

Query: 315 YAPLIMGCDIAGEGGDKTVVV----FRRGNIIEHIFDWSAKLI 353
               + G   +  G D+  +        G  +E I   S  ++
Sbjct: 324 -GGKVFGVSFSRSG-DRVALAGAGRTDAGVHVEVIDGLSGTIV 364


>gi|77463780|ref|YP_353284.1| Phage terminase-like protein large subunit [Rhodobacter sphaeroides
           2.4.1]
 gi|77388198|gb|ABA79383.1| Phage terminase-like protein large subunit [Rhodobacter sphaeroides
           2.4.1]
          Length = 551

 Score = 60.0 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 36/308 (11%), Positives = 74/308 (24%), Gaps = 50/308 (16%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLIST------RPGMSIICI 113
            +       V  S        + + GRG  KT L+A + L  +        +P   I+  
Sbjct: 71  KLAEFQCRFVRGSMAPGVMVGVLSIGRGNAKTALSAGLALAELVGALHPKPQPKREILFA 130

Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173
           A +  Q K      V  ++  LP                   E                 
Sbjct: 131 ARNRDQAKTAFQFLVG-YIDGLPEEDRAGFTIRRGSKLEVEFEGN--------------G 175

Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSN 229
              +                    DE +       D +  +IL    + +     I TS 
Sbjct: 176 GGLARVIAADGKSILGGAPTLALMDERAAWEREKGDNLENAILSGLGKRDGRALIISTSA 235

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVE------------------GIDSGFH--EGI 269
               N +   +   P   + +       +                   G    +   +  
Sbjct: 236 PDDANTFSRWLDEPPPGTYVQEHRPAFGLPADDLPSLLEANPGAAEGIGSTPEWLVAQAR 295

Query: 270 ISRYGLDSDVARIEILGQFPQQEVN----NFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
            +     S ++    L +  +              ++   ++ + +     P ++G D+ 
Sbjct: 296 RAIARGGSALSSFRNLNRNERVSTEDRSVLVTVDEWLSAEVAPDELPPRSGPCVLGVDLG 355

Query: 326 GEGGDKTV 333
           G       
Sbjct: 356 GSRSMSAA 363


>gi|293396801|ref|ZP_06641076.1| prophage LambdaSa04 protein [Serratia odorifera DSM 4582]
 gi|291420708|gb|EFE93962.1| prophage LambdaSa04 protein [Serratia odorifera DSM 4582]
          Length = 669

 Score = 60.0 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/318 (12%), Positives = 89/318 (27%), Gaps = 59/318 (18%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
            WQ   + ++     +N +      F+ A + +G+G GK+ L+A + L+ +     P   
Sbjct: 178 PWQAFVVGSIFGWKRANGSR----RFRTAYVESGKGSGKSPLSAGIGLYCLMADKEPRAE 233

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           +   A  + Q    L+ +    ++  P                  ++ ++ S G   +  
Sbjct: 234 VYAAATKKDQAM-ILFRDAVAMVNQSP----------------ALSQRIDPSGGAGKEWN 276

Query: 170 TITCRTYSEERP-DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
               +T S  RP  +  G           DE     D     ++   T+        M +
Sbjct: 277 LAFLQTGSFFRPISSDDGQSGPRPHCALIDEVHEHKDNKAVEMMRAGTKGRRQALIFMIT 336

Query: 229 NTR-RLNGWFYDIFNIP---------------------------LEDWKRYQIDTRTVEG 260
           N+        Y+                                 ++    + +      
Sbjct: 337 NSGHDKTSVCYEYHQYGKQLAAGQKTNDAFFAFICSLDEGDDPFKDESCWAKANPSMGHT 396

Query: 261 IDSGFHEGIISRYGL---DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR-EAIDDLYA 316
               +    +           + R     ++     N +I  +         +  +    
Sbjct: 397 FQPEYLREQVEDARGMPSKESLVRRLNFCEWVD-AENPWIGGDVWMACEKTFDIAELQGR 455

Query: 317 PLIMGCDIAGEGGDKTVV 334
               G D++G+  D T +
Sbjct: 456 MCYGGLDLSGK-RDLTAL 472


>gi|146328895|ref|YP_001209648.1| phage terminase, large subunit [Dichelobacter nodosus VCS1703A]
 gi|146232365|gb|ABQ13343.1| phage terminase, large subunit [Dichelobacter nodosus VCS1703A]
          Length = 424

 Score = 60.0 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/272 (10%), Positives = 64/272 (23%), Gaps = 38/272 (13%)

Query: 91  TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
           +   A  ++      P    +CI   +  L++++ A V   +  L     F++Q   +  
Sbjct: 34  SHFFAERIVEEHIINPNRKTVCIREIQKSLRHSVKALVESKIEALGVSSAFDIQRDLILN 93

Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS 210
            G               +  +  +   +   D+            + +EA          
Sbjct: 94  RG--------------GNGLMIFQGMQDHTADSIKSL--EDFDCAWIEEAQSISKRSLSL 137

Query: 211 ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP-LEDWKRYQIDTRTVEGIDSGFHEGI 269
           +     + N    W    N +           +   E+     ++ R             
Sbjct: 138 LRPTIRKQNSE-IWASW-NPQLKTDPIDQFLRVDCPENSITVAVNLRDNPFASEEIWREY 195

Query: 270 ISRYGLDSD-----------VARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
                                      G +        +   Y     + E    +Y  +
Sbjct: 196 RDDRERAKRKAAAGDKNAWGEFEHIWHGAYRSHSAAQVLAGCYRVADFAIEPHWSIYHGV 255

Query: 319 IMGCDIAGEGGDKTVV---VFRRGNIIEHIFD 347
             G        D TV+          + +I +
Sbjct: 256 DWG-----FASDPTVLVRCYLDEAARVLYIAE 282


>gi|119385360|ref|YP_916416.1| phage terminase [Paracoccus denitrificans PD1222]
 gi|119375127|gb|ABL70720.1| phage Terminase [Paracoccus denitrificans PD1222]
          Length = 544

 Score = 60.0 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/308 (12%), Positives = 80/308 (25%), Gaps = 50/308 (16%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLIST------RPGMSIICI 113
            +       V  +        + + GRG  KT L+A + L  +        +P   II  
Sbjct: 64  KLANFQKKFVKGAFGKGVTVGVLSIGRGNAKTALSAGLALAELVGALQEDPQPNREIIFA 123

Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173
           A +  Q +   +  V  +++ LP     +                +  +           
Sbjct: 124 ARNRDQAR-IAFNFVLGYINGLPESDQAQFTIRR---------GSKLEIEFGG-----NG 168

Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSN 229
              +                    DE +       D +  +IL    + +     I TS 
Sbjct: 169 GGLARCIAADGKSILGGAPTLAIMDERAAWEREKGDNLENAILSGLGKRDGRALIISTSA 228

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVE------------------GIDSGFH----E 267
               N +   +   P   + +       +                   G    +     +
Sbjct: 229 PDDTNTFSRWLDEPPPGSYVQEHRPPFGLPADDLESLLLANPGAAEGIGSTPEWLLSAAK 288

Query: 268 GIISRYGLDSDVARIEILGQFPQQEVNNFIPH--NYIEEAMSREAIDDLYAPLIMGCDIA 325
             I+R G      R     +    E  + +     ++   ++ E +     P I+G D+ 
Sbjct: 289 TAIARGGAALSSFRNLNRNERVSIENRSVLVTVDEWLSAEVAPEDLPPREGPCILGVDLG 348

Query: 326 GEGGDKTV 333
           G       
Sbjct: 349 GSRSMSAA 356


>gi|253699636|ref|YP_003020825.1| DNA packaging protein GP17 (terminase) [Geobacter sp. M21]
 gi|251774486|gb|ACT17067.1| putative DNA packaging protein GP17 (terminase) [Geobacter sp. M21]
          Length = 504

 Score = 60.0 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 47/384 (12%), Positives = 94/384 (24%), Gaps = 88/384 (22%)

Query: 41  KGKPLEHFSQPHRWQL----EFMEAVDVHCHSNVNNSNPTIFKC-----AISAGRGIGKT 91
           K   LE       W+L    + ++         +N+    + K       I   R  G T
Sbjct: 2   KATELEEKLGSRLWRLNNLYKVIDKDGNLIQFRLNHVQKELLKNLWYLNVILKSRQQGIT 61

Query: 92  TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151
           T    + L L      +    +A+     +     ++      LP           +   
Sbjct: 62  TFICILFLDLALFSENIHCGIVAHRLPDAQTFFDDKIRFAYDNLPE---------EIRER 112

Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211
               +     +   +        +       T+   H +    +     +  P    +  
Sbjct: 113 ITLVKDTSMRLVFSNGSKITVGVSLR---SGTYQYLHISELGKI----CAQFPKKALEIK 165

Query: 212 LGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-----------DWKRYQIDTRTVE- 259
            G    +    +  + S     +G FY    +              DW+ +         
Sbjct: 166 SGALNTIKAGNYIFIESTAEGRSGDFYSYCQLAENGLREGKELTLLDWRFHFFGWTLDPA 225

Query: 260 -----------GIDSGFHEGIISRYGLDSDVARIEILG-------------QFPQQEVNN 295
                           +   +  ++GL +D  +                  ++P      
Sbjct: 226 ARLNPEGVTITQELHEYFRELEVKHGLVTDDWQRAWYAKKLLQQGVDMMYREYPATSEEA 285

Query: 296 FIPHNYIEEAMSRE---------------AIDDLYAPLIMGCDIAGEGGDKTVVVFRR-- 338
           F     I  A  ++                  +   P+    D+     D T +VFR+  
Sbjct: 286 FFAA--IHGAYYKQQMLKLRQQVPPRFATVPWEPKLPVDTAWDLGM--DDTTCIVFRQRY 341

Query: 339 GNIIEHIFDWSAKLIQETNQEGCP 362
           G     I         E + EG P
Sbjct: 342 GTQNRLI------DYHENSGEGLP 359


>gi|332522503|ref|ZP_08398755.1| putative phage terminase, large subunit [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332313767|gb|EGJ26752.1| putative phage terminase, large subunit [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 470

 Score = 59.6 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/297 (12%), Positives = 78/297 (26%), Gaps = 44/297 (14%)

Query: 54  WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113
           WQ   +  +       +       +       R  GKT +   + LW +    G+ I+  
Sbjct: 43  WQKNMLSPIMAIDEDGLWVHQKYGYAI----PRRNGKTEIVYILELWGL--HKGLKILHT 96

Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173
           A+  +    + + ++ K+L M  +                  + +        +    + 
Sbjct: 97  AHRISTSH-SSFEKLKKYLEMSGYVD--------------GEDFISNKAKGQERIEFKSS 141

Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233
            +  + R  T  G        +  DEA         ++    T+ +     +M      +
Sbjct: 142 GSVIQWRTRTSNGGLGEGFDLLVIDEAQEYTSEQESALKYTVTDSDNPMT-VMCGTPPTM 200

Query: 234 ---------------------NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISR 272
                                +GW     +   +                      I + 
Sbjct: 201 VSTGTVFESYRKEVLKGAKKYSGWAEWSVSEMTKIDDVQSWYIANPSMGFHLNERKIEAE 260

Query: 273 YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329
            G D     I+ LG +P     + I        +  E   +L   L +G     +G 
Sbjct: 261 LGDDEIDHNIQRLGYWPTFNQKSVISEKEW-GKLKVEQTPELSGKLFVGIKFGQDGN 316


>gi|192292355|ref|YP_001992960.1| Terminase [Rhodopseudomonas palustris TIE-1]
 gi|192286104|gb|ACF02485.1| Terminase [Rhodopseudomonas palustris TIE-1]
          Length = 540

 Score = 59.6 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 43/336 (12%), Positives = 93/336 (27%), Gaps = 64/336 (19%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS---TRPGM 108
             WQ   +  +      N +     +    +   RG  KT+L A + L        RPG 
Sbjct: 49  DEWQDRIVRRIYGPRDQNGHR---IVKTVVLLLPRGNRKTSLAAALSLLHTIGPERRPGG 105

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
             I  A    Q     + E +  +          +++  ++ +      +++ +      
Sbjct: 106 EAIFAAGDRPQAS-LGFKEAAGIIR----EDKRLVKATRIYDA---HNSVKKIVFNKDGS 157

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMT 227
           +        E         H       F DE     +  +  +I     +   +   I T
Sbjct: 158 FL-------EAISGEGAPAHGRTPAFAFVDELHIWKNADLWTAIKSGLPKTQGSLLIIAT 210

Query: 228 SNTRRLNGWFYDIFNIPLE----------------------DWKRYQIDTRTVEGID--S 263
           +  R  +   ++I +   +                      DW+   +  R   G+    
Sbjct: 211 TAGRGQDNIAHEIVDRARKVARGDIDDPSLLPILFETPDDADWRDEALWHRANPGLALGY 270

Query: 264 GFHEGIISRYGLDS------DVARIEILGQFPQQEVNNFIPHNYIEEAMSR-EAIDDLYA 316
              EG+              +  R   L  +  +  + F+     ++     +       
Sbjct: 271 QDIEGLRQLAREGETSITARETFRQYNLNVWLDRSTDPFVEMAVYDQGADPVDLEALKGR 330

Query: 317 PLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
           P  +G D++ +  D TV+          +  W    
Sbjct: 331 PCWLGVDLSSQ-TDLTVI----------VAAWRDDD 355


>gi|317473130|ref|ZP_07932428.1| phage terminase [Anaerostipes sp. 3_2_56FAA]
 gi|316899354|gb|EFV21370.1| phage terminase [Anaerostipes sp. 3_2_56FAA]
          Length = 499

 Score = 59.6 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/245 (11%), Positives = 64/245 (26%), Gaps = 19/245 (7%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
             GRG  K++  +  +L LI     M  + +      L+ +++ ++   +  L     F 
Sbjct: 119 PGGRGSTKSSFISLNVLDLIMKNDDMHAVVMRQVADTLRGSVYQQMLWAIEALGLSEDFH 178

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
                +             +   S    I  R   +      +     +   ++ +E   
Sbjct: 179 ATVSPM------------EITRISTGQKIYFRGADDPGKVKSIKVPFGYIGILWLEELDQ 226

Query: 203 TP-DIINKSILGFFTELNPNRFWIMTSNTRR-LNGWFYDIFNIPLEDWKRYQIDTRTVE- 259
                  + I           +   + N  +    W      IP E           +  
Sbjct: 227 FTGPESVRKIEQSVIRGGEYAYIFKSFNPPKSKGNWANKYIKIPKETRLVTHSTYMDIPK 286

Query: 260 -GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
             +   F +       ++      E +G+           +  I E    +     +  +
Sbjct: 287 KWLGKPFLDEAEFLKEVNPAAYDNEYMGE-ANGNGGQVFDNVTIRE--ITDEEIAQFDRI 343

Query: 319 IMGCD 323
             G D
Sbjct: 344 YNGVD 348


>gi|167754216|ref|ZP_02426343.1| hypothetical protein ALIPUT_02509 [Alistipes putredinis DSM 17216]
 gi|237711925|ref|ZP_04542406.1| predicted protein [Bacteroides sp. 9_1_42FAA]
 gi|167658841|gb|EDS02971.1| hypothetical protein ALIPUT_02509 [Alistipes putredinis DSM 17216]
 gi|229454620|gb|EEO60341.1| predicted protein [Bacteroides sp. 9_1_42FAA]
          Length = 529

 Score = 59.6 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/253 (10%), Positives = 57/253 (22%), Gaps = 33/253 (13%)

Query: 90  KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLH 149
           K+ + +  ++        +  +    +   LK + W  +         + W   +  +  
Sbjct: 82  KSYIGSVWLVSSCIRFENIRAVVARKTLKSLKESTWNTI-----KSILKDWGLKEDTN-- 134

Query: 150 PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209
              +    LE ++   +    I            F    ++       DE S   +   +
Sbjct: 135 ---YKINNLEGTLTFWNDSVIIMKEMADIPSDPNFERFGSSEYTIAMVDEVSEISERAVE 191

Query: 210 SILGFFTELNPNRF----WIMTSNTRRLNGWFYDIFNIP--------LEDWKRYQIDTRT 257
            +           F     ++T+N      W    F            E           
Sbjct: 192 VLFSRLRWRTHETFKTPRMLLTTNPT--INWVRSRFVQDENGDKVICREGEAYIPFSVFD 249

Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILG--QFPQQEVNNFI-----PHNYIEEAMSREA 310
              I              D       + G   F +              + +     +  
Sbjct: 250 NPNIAFRQVYEAALNKIRDQATKERLLYGNWDFVEANDMAIYNSFDGSRHLVTGLKEKAY 309

Query: 311 IDDLYAPLIMGCD 323
             D   PLI   D
Sbjct: 310 --DPTKPLITVWD 320


>gi|322412171|gb|EFY03079.1| phage terminase [Streptococcus dysgalactiae subsp. dysgalactiae
           ATCC 27957]
          Length = 471

 Score = 59.6 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/298 (13%), Positives = 76/298 (25%), Gaps = 44/298 (14%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ   +  +       +       +       R  GKT +   + LW +    G+ I+ 
Sbjct: 43  PWQENMLIPIMAIDEDGLWVHQKYGYAI----PRRNGKTEVVYIVELWAL--HKGLKILH 96

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            A+  +      + +V K+L M  +                  + +        +     
Sbjct: 97  TAHRISTSH-ASFEKVKKYLEMSGYVD--------------GEDFISNKAKGQERIEFKA 141

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR- 231
                + R  T  G        +  DEA         ++    T+ +     IM      
Sbjct: 142 SGAVIQFRTRTSNGGLGEGFDLLIIDEAQEYTSEQESALKYTVTDSDNPMT-IMCGTPPT 200

Query: 232 --------------------RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271
                               R +GW        ++                      I +
Sbjct: 201 IVSTGTVFEAYRKDCLKGNKRYSGWAEWSVPEMVKINDVSSWYISNPSMGFHLNERKIEA 260

Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329
             G D     I+ LG +      + I        +  E + +L + L +G     +G 
Sbjct: 261 ELGEDEIDHNIQRLGYWSSFNQKSVISEKEW-AKLKVEQVPELKSKLFVGIKFGQDGN 317


>gi|262380916|ref|ZP_06074065.1| terminase [Acinetobacter radioresistens SH164]
 gi|262297448|gb|EEY85368.1| terminase [Acinetobacter radioresistens SH164]
          Length = 517

 Score = 59.6 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/305 (13%), Positives = 79/305 (25%), Gaps = 55/305 (18%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW--LISTRPGMSI 110
            WQ++++  +        +N      + A+   R  GKT L A + L+       P    
Sbjct: 44  DWQIKYLREL--FGWRRKDNHKRRYRQSALFISRKQGKTELAAAIALYCLHCENEPAAQC 101

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
             +A    Q                         + +   +    EL  +S         
Sbjct: 102 YNVAADTDQA--------------------ALCFNAAKAMTENEHELDSRSEIYKRSILV 141

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
               +       +    H  +      DE     D     +    T    N   + TS  
Sbjct: 142 PNSGSVYRVLSSSASTKHGLNVHYCGIDELHCIDDRELVDVFTTGTLARNNSLILYTSTA 201

Query: 231 RRLNGW-FYDIFNIPLE----------------------DWK----RYQIDTRTVEGIDS 263
                   Y+I++   +                      DWK               +D 
Sbjct: 202 GFNKNSICYEIWDYAQKVRDGIIDDPTFLPCIYEAPADADWKDPATWQAACPSMGHTVDL 261

Query: 264 GFHEGI---ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIM 320
            F+E       +     +V R   L Q+  +  + ++     ++  +    D    P   
Sbjct: 262 SFYEQECLKAQQVPAYENVFRRLYLNQW-TESDSRWLSSTIWDDCKNLNYPDLAGQPCYA 320

Query: 321 GCDIA 325
           G D++
Sbjct: 321 GLDLS 325


>gi|292496028|gb|ADE29129.1| terminase [uncultured virus]
          Length = 509

 Score = 59.6 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 93/304 (30%), Gaps = 35/304 (11%)

Query: 37  PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
           P G+   P  +     RW+ +   A++     + +         A  AG G GKT L A 
Sbjct: 42  PDGMDWDPESNILTYDRWEAQ-RRAIETTNQEHTDI-------AAFLAGYGSGKTLLGAR 93

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
            ++           + +     + ++T +  + + L              S +     + 
Sbjct: 94  WLIKQALQYDSSRFLALGIDFQKARDTTFRVLFEQLP-----GDRTGIVTSSYNGPEESP 148

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD---IINKSILG 213
           ++      D +   +          D +          V+ DE     D    + + +  
Sbjct: 149 IVVDYNRKDHRLTLVNDTVIKLGSADRWNRYAGDSYGGVWADEVGHYGDDLHDLLEMLGS 208

Query: 214 FFTELNPN--RFWIMTSNTRRLNGWFYDIFNIPLE--------DWKRYQIDTRTVEGIDS 263
               +     + W +T N        +DI    L+        + +  +  T     +  
Sbjct: 209 RLRGVGGPQTQLWTLTGN---GKNAAFDIIERGLDANGDKIGLNIETVKASTLENPYLSD 265

Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI--MG 321
              E    +YG  S   +  + G F      N +  +  + +   ++  D    L+  +G
Sbjct: 266 SEKERFKRQYGNTSREGQA-LHGGF-SAGEGNLLNRD--QLSFIDKSNYDGGENLVFYIG 321

Query: 322 CDIA 325
            D+A
Sbjct: 322 VDLA 325


>gi|13186147|emb|CAC33458.1| hypothetical protein [Legionella pneumophila]
          Length = 453

 Score = 59.6 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/266 (10%), Positives = 69/266 (25%), Gaps = 33/266 (12%)

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA----EVSKWLSMLPHRHWF 141
           R  GK  +   +  WL+++    + +       Q KN +W     E  +W+ ++P +H  
Sbjct: 40  RRFGKDAMFFNLA-WLVASMTRGNYLYTLPKIGQAKNVIWEGTDLEGRRWIDLIP-KHLL 97

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
             +        ++           S          S                 +F  E  
Sbjct: 98  AREPNQSERKIYFT----------SGSMLHITGADSILGAHLGSNLRG-----LFMSEFQ 142

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI 261
            T   +   +       +        ++  + +     I N+    W   ++        
Sbjct: 143 RTAPKVWDYLRP-IINRSQGFACFNYTSFGQCHAHRLRIANLHNPAWHCRKLTVNDTRDN 201

Query: 262 DSGFHE-----GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD--- 313
              +           + G+D D+ + E            +   +  +       +     
Sbjct: 202 QGNYIFSPEQIEDERKSGMDEDLIQQEYYCDDSVAVKGTYFAEHIQKARAEGRIVPTLEI 261

Query: 314 -LYAPLIMGCDIAGEGGDKTVVVFRR 338
               P+    D+     D   + F +
Sbjct: 262 YPSKPVHTSWDLG--SKDTNSIWFFQ 285


>gi|315650013|ref|ZP_07903093.1| PBSX family prophage LambdaCh01 protein [Eubacterium saburreum DSM
           3986]
 gi|315487783|gb|EFU78086.1| PBSX family prophage LambdaCh01 protein [Eubacterium saburreum DSM
           3986]
          Length = 425

 Score = 59.6 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 87/284 (30%), Gaps = 24/284 (8%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAG-RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
            +                +  +  G R   K+   A   +W I   P  +++ +      
Sbjct: 12  QLPEVVGRGYGTYWRYKGRYRVCKGSRASKKSKTTALWYIWAIMKYPQANLLVVRKVFRT 71

Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
           LK++ + E+   +  L   + +E +   L  + +     +           IT  T  + 
Sbjct: 72  LKDSCFTELKWAIRRLKVENHWEEKESPLEMT-YIPTGQKIYFRGLDDPLKITSITVEQG 130

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDII-----NKSILGFFTELNPNRFWIMTS-NTRRL 233
                      +   ++ +EA    +       ++SI G   +       I  + N    
Sbjct: 131 -----------YLCWMWLEEAYEISNENDFNMLDESIRGAIPKDVKLFKQITITLNPWNE 179

Query: 234 NGWF-YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292
           + W     F+ P ++      +    E +D    +   S    +    ++  LG++    
Sbjct: 180 HHWIKKRFFDTPDDEVLAMTTNYLCNEWLDKADLKVFESMKKNNPRRYQVAGLGEW--GI 237

Query: 293 VNNFIPHNYIEEAMSR-EAIDDLYAPLIMGCDIAGEGGDKTVVV 335
           V   +  N+ E+A    E         + G D      D + + 
Sbjct: 238 VEGLVYENWEEKAFDIGEVKKISTIQSVFGLDFGYT-NDPSALF 280


>gi|224542959|ref|ZP_03683498.1| hypothetical protein CATMIT_02153 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524097|gb|EEF93202.1| hypothetical protein CATMIT_02153 [Catenibacterium mitsuokai DSM
           15897]
          Length = 479

 Score = 59.6 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/298 (13%), Positives = 75/298 (25%), Gaps = 33/298 (11%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ   M  +               +       R  GK+ +     LW +    G  I+ 
Sbjct: 39  EWQEIQMMDIMAVDDDGQWVHIKYGYSI----PRRNGKSEILVMRELWGLLH--GEKILH 92

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            A+  T      W ++ + L    +           +   + A       G+++      
Sbjct: 93  TAHRTTTSH-ASWEKLKQMLDENDYTEVKRADKEKTYEKSYTATA---QFGLETIKILDD 148

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR- 231
               +  R  +  G        +  DEA    +    ++    T     +  +M      
Sbjct: 149 GGGSASFRTRSSKGGLGEGFDLLIVDEAQEYTEDQQSALQYVVTSSENPQT-LMCGTPPT 207

Query: 232 --------------------RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271
                                 +GW         +   R            +     + +
Sbjct: 208 AVSSGTVFVNLRKECLSGGSDTSGWAEWSVEHMSDVKDRDIWYETNPSLGQTLKERSVAA 267

Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329
               D     I+  G + Q    + I  N    A+  E I +   PL +G     +G 
Sbjct: 268 EDSSDEIDFNIQRFGLWLQYNQKSAISENEWN-ALKVETIPEFKGPLFVGIKYGHDGS 324


>gi|311067750|ref|YP_003972673.1| PBSX defective prophage terminase large subunit [Bacillus
           atrophaeus 1942]
 gi|310868267|gb|ADP31742.1| PBSX defective prophage terminase (large subunit) [Bacillus
           atrophaeus 1942]
          Length = 432

 Score = 59.6 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 71/280 (25%), Gaps = 55/280 (19%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           +  G G  K+   A  +L L   +   + + I       +++ +A   + +  L      
Sbjct: 24  LVGGYGSSKSYHTALKIL-LKLLKEKRTALVIREVFDTHRDSTFALFEEIIEELSLNRAV 82

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
              S  L             +   +    +       + P      H  +   ++ +E S
Sbjct: 83  TPLSSPL------------QLRFANGSRIMFKGM---DNPAKLKSVH--NISLIWIEECS 125

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-------------------- 241
                  K ++G       +   I T+N    + W Y  F                    
Sbjct: 126 EVKYEGFKELIGRLRHPKLDLHMICTTNPVGTSNWTYRHFFRDERNKRYILDDQELYKKR 185

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF----- 296
            I   D   +         +   + + +      D D+ RI   G+F    V        
Sbjct: 186 TIVSGDTYYHHSTALDNLFLPESYVKQLDGLKRYDPDLYRIARQGRFGVNGVRVLPQFEV 245

Query: 297 ------------IPHNYIEEAMSREAIDDLYAPLIMGCDI 324
                       I        M     +   A + +  D 
Sbjct: 246 LPHEQAEECIANISRPIFRTGMDFGFEESYNAVIRLAVDP 285


>gi|327409392|ref|YP_004301534.1| gp2 [Brochothrix phage BL3]
 gi|296245468|gb|ADH03081.1| gp2 [Brochothrix phage BL3]
          Length = 524

 Score = 59.6 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 34/264 (12%), Positives = 77/264 (29%), Gaps = 26/264 (9%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +     GRG  K+T  A M+L L+  +  +S + +      L  ++  ++ + + +L   
Sbjct: 30  RYVEKGGRGSAKSTHIA-MILILLMKKYAISALVVRKVGNTLSESVVEQLKEAVDILGME 88

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
             +      L  +               +  +I  R   +      +         ++ +
Sbjct: 89  DEWHFSKSPLKAT------------YKPRGNSIYFRGADDPGKIKSIKIAKFPLTILWIE 136

Query: 199 E-ASGTPDIINKSILGFFTE----LNPNRFWIMTSNTRRLNGWF----YDIFNIPLEDWK 249
           E A    +     I             + ++  + N  +    +    Y+       + +
Sbjct: 137 ELAEFKLEEEIGVIEKSVLRAKLPPGLSYYFFNSYNPPKRKQSWVNKKYETKVALAPNTR 196

Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309
            +    +    I   F E     Y  +   A  E  G+      N  +P N +       
Sbjct: 197 VHHTTYKDNPHISDEFIEEAEHMYQTNPQKAAWEYGGEPI---GNGVVPFNNLVFRTITN 253

Query: 310 AIDDLYAPLIMGCDIAGEGGDKTV 333
                ++ +  G D  G   D   
Sbjct: 254 DEFKSFSNIRQGLDF-GYATDPVA 276


>gi|134298252|ref|YP_001111748.1| hypothetical protein Dred_0375 [Desulfotomaculum reducens MI-1]
 gi|134050952|gb|ABO48923.1| conserved hypothetical protein [Desulfotomaculum reducens MI-1]
          Length = 526

 Score = 59.6 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 65/235 (27%), Gaps = 28/235 (11%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
            +     + + N++  N       IS  R +G TT +    LWL  TR   + + ++ + 
Sbjct: 40  ILNEQQDYFYQNMDKFN------IISKSRQLGFTTYSLAYCLWLACTRANTNCLIVSYNV 93

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
                +++  + +  + +P ++                      + +++    I      
Sbjct: 94  EST-QSIFERLKQMYASIPDKY-----------KPAEKRNNRIELLLENNSRIIV----- 136

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF--TELNPNRFWIMTSNTRRLNG 235
            +               V   E +  PD   +  L          N   I+   T     
Sbjct: 137 -KTAGNKSLGRGMTLQYVLLSEFAFYPDDQQRDSLVSLEQALAKNNDSKIVIETTSNGYN 195

Query: 236 WFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290
           ++  +F    +     +  +       S   +       L     R    G   +
Sbjct: 196 YYQKLFMSAYKG--NSKYKSFFFPWFSSAISKQFKHEIELAEKWFRANNKGHRME 248


>gi|268608995|ref|ZP_06142722.1| Phage terminase large subunit [Ruminococcus flavefaciens FD-1]
          Length = 421

 Score = 59.2 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/276 (10%), Positives = 67/276 (24%), Gaps = 37/276 (13%)

Query: 72  NSNPTIFKCAISAGRGIGKTT-LNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK 130
              P  +          GKT  ++   +LW +    G +     N+             +
Sbjct: 17  CYAPDSYALICDGSVRSGKTAAMSCSFILWAMKCFNGENFGICGNT------------VQ 64

Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
            +         +M  ++ +    Y       + +           +  +   ++      
Sbjct: 65  AVERNIIAPLTQMTDITYYFRLKYVGGGRHRLTVTGAGRENYFYVFGGKDEASYKLVQGI 124

Query: 191 HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250
               V  DE +  P+      +     ++  + W    N      WFY  + +  ++   
Sbjct: 125 TLAGVLFDEVALMPESFVNQAIARTLSVSGAKLWFS-CNPDSPAHWFYTNWILKAQEKNA 183

Query: 251 YQIDTR--TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH----NYIEE 304
            +I  R      +         S +       +  +LG +                +I  
Sbjct: 184 LRIHFRMEDNPVMTPEKIRRTESTFSG--VFYQRYVLGDWV-VAEGLVYTMFDRAEHIFN 240

Query: 305 AMSREAIDDLYAPLI--------------MGCDIAG 326
           A             I                 DI+G
Sbjct: 241 AGDLTVDPVAGDMFISIDYGTKNPTSMGLWYVDISG 276


>gi|290474254|ref|YP_003467131.1| Gp48 [Xenorhabdus bovienii SS-2004]
 gi|289173564|emb|CBJ80344.1| Gp48 [Xenorhabdus bovienii SS-2004]
          Length = 489

 Score = 59.2 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/338 (12%), Positives = 81/338 (23%), Gaps = 88/338 (26%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  I   R +G TT    + L   +         IA++    K     +V      LP  
Sbjct: 48  RNIILKARQLGFTTEVCIIQL-DAALFESAKCALIAHTLNDAKRLFREKVKYAYDQLPD- 105

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                    +  +   +      +            ++      T    H          
Sbjct: 106 --------EIKAANPASNDAAGELVFRKGGSLYVSTSFRG---GTLRYLH--------VS 146

Query: 199 EASGT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-------- 246
           E        P    + + G F  ++ + F  + S      G+F+D      +        
Sbjct: 147 EFGKICAKFPHKAREIVTGAFEAVSTDCFTTIESTAEGRAGYFFDYCQTAEKAQLQGKQL 206

Query: 247 ---DWKRYQIDTRTVEGIDSGFHEGI---------------------------------- 269
              DWK +               E                                    
Sbjct: 207 SNLDWKFFFFSWWKNPQYAIDPVEAWPQRLVDYFAELSGKHGIQLNERQKAWYLAKEKTL 266

Query: 270 -----ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI 324
                     + S+  +  + G +  ++          E     +  D+ + P+    DI
Sbjct: 267 GDDMKREYPSIPSEAFQQSVEGAYYAKQFRWLY-----ENKRIGKLPDNSHLPVHTFWDI 321

Query: 325 AGEGGDKTVVVFRRGNIIEHIF-DWSAKLIQETNQEGC 361
               GD T + F     +  +  ++      E + EG 
Sbjct: 322 GV--GDSTAIWF-----VREVGEEFHVIDYYENSGEGL 352


>gi|148727084|ref|YP_001285578.1| gp2 [Propionibacterium phage PA6]
 gi|91982908|gb|ABE68571.1| gp2 [Propionibacterium phage PA6]
          Length = 503

 Score = 59.2 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/343 (12%), Positives = 96/343 (27%), Gaps = 45/343 (13%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
            +   P  WQ + ++       +    S      C +   R  GK  +   + L+  + +
Sbjct: 32  AYGLTPDPWQQQVLDDWLAVGSNGRLASGV----CGVFVPRQNGKNAILEIVELFKATIQ 87

Query: 106 PGMSIICIANSETQLKNTLWAE--VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
            G  I+  A+     +          +     P  +   ++S+          L      
Sbjct: 88  -GRRILHTAHELKSARKAFMRLRSFFENERQFPDLYR-MVKSIRATNGQEAIVLHHPDCA 145

Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT-ELNPNR 222
              K    +     E    +           +  DEA    D   +++L   +   + + 
Sbjct: 146 TFEKKCGCSGWGSVEFVARSRGSARGFTVDDLVCDEAQELSDEQLEALLPTVSAAPSGDP 205

Query: 223 FWIMTSNTR------------------RLNGWFYDIFNIPLE--------DWKRYQIDTR 256
             I                            + +  F+IP E         W++   DT 
Sbjct: 206 QQIFLGTPPGPLADGSVVLRLRGQALGGGKRFAWTEFSIPDESDPDDVSRQWRKLAGDTN 265

Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ-EVNNFIPHN-YIEEAMSREAIDDL 314
              G    F         + +     E LG + +     + +P + + + A+   ++   
Sbjct: 266 PALGRRLNFGTVSDEHESMSAAGFARERLGWWDRGQSAASVVPADKWAQSAVDEASLV-- 323

Query: 315 YAPLIMGCDIAGEGGDKTVVV----FRRGNIIEHIFDWSAKLI 353
               + G   +  G D+  +        G  +E I   S  ++
Sbjct: 324 -GGKVFGVSFSRSG-DRVALAGAGKTDAGVHVEVIDGLSGTIV 364


>gi|308071887|emb|CBW54808.1| putative DNA maturase B [Pantoea phage LIMElight]
          Length = 614

 Score = 59.2 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 82/289 (28%), Gaps = 46/289 (15%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEA 61
           PR I +D++ E  +   +   E    F++F          G  L                
Sbjct: 25  PRTIPSDKRTELAMMLAITFKE----FRDFAYVGM--RFLGFELTDMQA----------D 68

Query: 62  VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121
           +  +                ++A RG  K+TL A   +W +       ++ ++  E Q  
Sbjct: 69  IADYMQYGPRKKM-------VAAQRGEAKSTLAALYSVWRLIQDQRCRVLILSGGEQQAS 121

Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
                 V + +   P   W +  S     + + A  +   +    K  ++ C   +    
Sbjct: 122 EVA-TLVIRLIETWPLLCWLKADSTRGDRTSYTAYDVHCDLKPLDKSPSVACIGVTA--- 177

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS------NTRRLNG 235
                        +  D+   T + + ++       ++ +   I T        T +   
Sbjct: 178 ----SLQGKRADLLIPDDIETTKNGMTQTEREKLLTVSKDFAAICTHGDTLYLGTPQTKD 233

Query: 236 WFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
             Y    +P   ++      R            +  RYG        E+
Sbjct: 234 SIYK--TLPARGFEVRVWPGRIPS-------LEMEERYGETLAPYIHEL 273


>gi|330858400|ref|YP_004414753.1| Gp2 [Propionibacterium phage PAD20]
 gi|260066518|gb|ACX30797.1| Gp2 [Propionibacterium phage PAD20]
          Length = 503

 Score = 59.2 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/343 (12%), Positives = 93/343 (27%), Gaps = 45/343 (13%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
            +   P  WQ + ++                +    +   R  GK  +   + L+  + +
Sbjct: 32  AYGLTPDPWQQQVLDDWLAV--GGNGRLASGVCGVFV--PRQNGKNAILEVVELFKATIQ 87

Query: 106 PGMSIICIANSETQLKNTLWAE--VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
            G  I+  A+     +          +     P  +   ++S+          L      
Sbjct: 88  -GRRILHTAHELKSARKAFMRLRSFFENERQFPDLYR-MVKSIRATNGQEAIVLHHPDCA 145

Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT-ELNPNR 222
              K          E    +           +  DEA    D   +++L   +   + + 
Sbjct: 146 TFEKKCGCPGWGSVEFVARSRGSARGFTVDDLVCDEAQELSDEQLEALLPTVSAAPSGDP 205

Query: 223 FWIMTSNTR------------------RLNGWFYDIFNIPLE--------DWKRYQIDTR 256
             I                            + +  F+IP E         W++   DT 
Sbjct: 206 QQIFLGTPPGPLADGSVVLRLRGQALSGGKRFAWTEFSIPDESDPDDVSRQWRKLAGDTN 265

Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ-EVNNFIPHN-YIEEAMSREAIDDL 314
              G    F         + +     E LG + +     + IP + + + A+   ++   
Sbjct: 266 PALGRRLNFGTVSDEHESMSAAGFARERLGWWDRGQSATSVIPADKWAQSAVDEASLV-- 323

Query: 315 YAPLIMGCDIAGEGGDKTVVV----FRRGNIIEHIFDWSAKLI 353
               + G   +  G D+  +        G  +E I   S  ++
Sbjct: 324 -GGKVFGVSFSRSG-DRVALAGAGRTDAGVHVEVIDGLSGTIV 364


>gi|226366383|ref|YP_002784166.1| phage terminase family protein [Rhodococcus opacus B4]
 gi|226244873|dbj|BAH55221.1| phage terminase family protein [Rhodococcus opacus B4]
          Length = 511

 Score = 59.2 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/346 (10%), Positives = 95/346 (27%), Gaps = 35/346 (10%)

Query: 4   LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63
              T+     E    L         +   +    +  +      + +   +Q+  ++++ 
Sbjct: 16  FDGTEPYCPLEWTPPLSPDAPSDGPRARALACKLFKQEN---GKYLELDDYQIRLIDSIL 72

Query: 64  VHCHSNVNNSNPT---IFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
                +    +      ++ AI +  R  GK+TL + ++ + +      +I  +A+++ Q
Sbjct: 73  ELYPDDYEVEHLRGCLRYRQAIVSIPRRNGKSTLASVLVTYSMLLSVAPNIGVLASTKEQ 132

Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
            K         + +    +  F+  +     S    +     +   +    +   T+   
Sbjct: 133 AKEVFDNTKYNFENNEALKKRFKTTNSKGLESRRTDKPAHFKIHAGNGDG-LQGITFVGN 191

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP----------NRFWIMT-- 227
            P      H T   A   D A         +++   T                       
Sbjct: 192 VPVVVDELHITKTEAY--DAAVKGASTCLSAVVIGITTAGTEDSELLKRLYKTGQAAIAG 249

Query: 228 ---SNTRRLNGWFYDIFNIPLEDWKRYQ------IDTRTVEGID-SGFHEGIISRYGLDS 277
              +N R   G+++       E + R                ID         +    D 
Sbjct: 250 GEDANPR--FGFWHWTVAEGTELFDREALLRANPASQTNPPRIDIDQEILEGKANPAGDY 307

Query: 278 DVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
              R     +F     + ++  +   +A  +   +     ++   D
Sbjct: 308 AEFRRYRRNEFI-HSEDIWLSLDVWAKANGKGIPEHYTGNVVYSID 352


>gi|182415227|ref|YP_001820293.1| hypothetical protein Oter_3416 [Opitutus terrae PB90-1]
 gi|177842441|gb|ACB76693.1| protein of unknown function DUF264 [Opitutus terrae PB90-1]
          Length = 521

 Score = 59.2 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/300 (12%), Positives = 76/300 (25%), Gaps = 37/300 (12%)

Query: 86  RGIGKTTLNAWM----MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           R IGK+T  A      +L  + T     +  ++NS       +   V +    L      
Sbjct: 54  RQIGKSTTLAGWAVDRLLKQLQTHDTWLVTVLSNSRANGGEFVLK-VHEVCRKLGQAFVE 112

Query: 142 EMQSLSLHPSGWYAELLEQSM-GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
           +    +L      +E  +  +   + +                        G     DE 
Sbjct: 113 DGNREALADDKTMSEDAKLELMRFEVRLQVGQKLGRIIVLAANPRTARGFSGDL-ILDEF 171

Query: 201 SG--TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID--TR 256
           +       I ++     +  NP     ++S        FY +       + R +     +
Sbjct: 172 AFHQDSRAIWEAAEPIIS-ANPEFLCRISSTGNGRRNMFYQLIAEGRIPYYRMRRSDAWK 230

Query: 257 TVEGIDSGFHE------GIISRYGLDSDVARIEILGQFPQQEVN---------------N 295
             E                      D         G+F  +                   
Sbjct: 231 RGEIRIYSVVTGEEITPDQARAEASDKRAYDQNYEGEFNDEASALLTQELISAAEREGIA 290

Query: 296 FIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTV--VVFRRGNIIEHIFDWSAKLI 353
                + E  + R         L +G D+  +  D +V  V+ R G+    +     + +
Sbjct: 291 IEHQEWSEATIER-LRTKTIGDLFLGQDVGRK-RDFSVQTVIERIGSGYRVVAMLRMENM 348


>gi|282174047|ref|YP_003358149.1| ORF10 [Anguillid herpesvirus 1]
 gi|281314116|gb|ADA57773.1| ORF10 [Anguillid herpesvirus 1]
          Length = 787

 Score = 59.2 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 49/163 (30%), Gaps = 9/163 (5%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GKTT+ A  +L  + +   + I+  A S +  K      +   ++    + WF  Q
Sbjct: 227 PRRCGKTTVVAI-VLAAMLSFLPIDIMVQAQSLSMSKEIHVK-MEGLMNKYKAKPWFPEQ 284

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
              +   G                 T      S             +      DEA+   
Sbjct: 285 FKYIARKGCDKAYTYIFPPGAKPGKTTAHFLSSSHNA-----ARGQNPDICVVDEAAFVS 339

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
             +  S+L   T     +     S+    N W   + ++  ED
Sbjct: 340 PGMLVSVLPLMTVKGTKQIH--ISSPGAPNSWISQVGDVKRED 380


>gi|203288734|ref|YP_002223670.1| bsr protein [Borrelia duttonii Ly]
 gi|201084584|gb|ACH94162.1| bsr protein [Borrelia duttonii Ly]
          Length = 330

 Score = 58.8 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 50/163 (30%), Gaps = 11/163 (6%)

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
            Y  ++   F     ++   ++ +EA+       K +L          F I  +N     
Sbjct: 25  LYGGDKVRDFERFRGSNSAVIYVNEATTLHKETLKEVLKRLRM--KPEFIIFDTNPDHPE 82

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294
            +F   +      +  Y   T   E I   F +     Y          +LG++      
Sbjct: 83  HYFKTDYIDNNTVYSTYNFTTYDNETISKEFIKTQEEIYKDLPTYKASVLLGEWVANNDA 142

Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336
            F   N IE+          +   I   D A   GGD TV+  
Sbjct: 143 IFRNINIIED--------YEFKSPIAYLDPAYSSGGDNTVLCV 177


>gi|302385792|ref|YP_003821614.1| phage terminase, large subunit, PBSX family [Clostridium
           saccharolyticum WM1]
 gi|302196420|gb|ADL03991.1| phage terminase, large subunit, PBSX family [Clostridium
           saccharolyticum WM1]
          Length = 428

 Score = 58.8 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/225 (10%), Positives = 58/225 (25%), Gaps = 38/225 (16%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            G G  K+   A  ++  +       ++ +      ++++ +  + +    +    +   
Sbjct: 31  GGYGSSKSYHVAVKLIKKLLE-EKRKVLVVREVFDTIRDSCFDLLMEVSEAMGVSDYITF 89

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
            +  +             +   +    I                       V+ +E S  
Sbjct: 90  TTSPM------------QVRFSNGSKIIFKGMDKPA-----KLKSLNGVSIVWIEECSEV 132

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE----------------- 246
                K ILG       +   I+++N    + W Y  F                      
Sbjct: 133 KYAGFKEILGRLRHPELSNHIILSTNPVSKSNWVYKHFFQDKSTGYKILNDEELYTRRIV 192

Query: 247 ---DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
              +   +         +   + E +      D D+ RI   G+F
Sbjct: 193 VIGNTYYHHSTVDDNYFVPQEYVEQLDELQQHDPDLYRIARKGRF 237


>gi|148998991|ref|ZP_01826425.1| hypothetical protein CGSSp11BS70_06735 [Streptococcus pneumoniae
           SP11-BS70]
 gi|147755199|gb|EDK62252.1| hypothetical protein CGSSp11BS70_06735 [Streptococcus pneumoniae
           SP11-BS70]
          Length = 470

 Score = 58.8 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/299 (12%), Positives = 86/299 (28%), Gaps = 49/299 (16%)

Query: 54  WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113
           WQ+  + ++     + +       +       R  GK+ L     LW +    G++I+  
Sbjct: 43  WQVNLLTSIMAVDKNGLWVHQKFGYSI----PRRNGKSELLYLFELWGL--HNGLNILHT 96

Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173
           A+  +    + + +V ++L  + +    +  S+               +           
Sbjct: 97  AHRISTSH-SSFEKVKRYLEKMGYVDGEDFSSIRAKGQ------ERIELFDGGGIVQFRT 149

Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR-- 231
           RT +                 +  DEA         ++    T+ +     IM       
Sbjct: 150 RTSNGGL--------GEGFDLLVIDEAQEYTTEQESALKYTVTDSSNPIT-IMCGTPPTP 200

Query: 232 ------------------RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE-GIISR 272
                                  + +      ++         +   +    +E  I + 
Sbjct: 201 VSNGTVFTNYRKNCLFGKGKYSGWAEWSVSEEKEIDDVDAWYNSNPSMGYHLNERKIEAE 260

Query: 273 YGLDSDVARIEILGQFPQQEVNNFIP-HNYIEEAMSREAIDDLYAPLIMGCDIAGEGGD 330
            G D     ++ LG +P+    + I    + E  +  ++I DL   L +G      G D
Sbjct: 261 LGDDKLDHNVQRLGYWPEYNQKSAISETEWNELCV--DSIPDLSGKLFVGV---KYGQD 314


>gi|93007440|ref|YP_579204.1| terminase large subunit [Streptomyces phage mu1/6]
 gi|90568518|gb|ABD94197.1| terminase large subunit [Streptomyces phage mu1/6]
          Length = 448

 Score = 58.8 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/258 (12%), Positives = 70/258 (27%), Gaps = 18/258 (6%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
             GRG GKT   A  M+  ++  P    I   +  +     +       +    +     
Sbjct: 57  LGGRGTGKTDGCARFMVSHVNGPPCDDRIPGGHRMS----IIAPTQGDAVESAVNGPSGL 112

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH-NTHGMAVFNDEAS 201
                                          + +    PD         +   V+ +EA+
Sbjct: 113 RAHDPR-----VVLRTTVGGTYARWPSGAEAKVFGAHTPDDVERLRSGGNRCLVWLEEAA 167

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI 261
               +               R   + S T +      ++  +   D    +  TR    +
Sbjct: 168 AMRYLGPALAHSAMGLRIGPRPHYIASTTPKPRKEIVEL--LARPDVITTRGRTRDAHHL 225

Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMG 321
                + ++++Y     + R E+ G+  Q           ++    R       + +++ 
Sbjct: 226 PQMMRDKLVAQYAGT-RLERQELDGEVLQDVDGALWSWPLLDRL--RVGAPMPMSRIVVA 282

Query: 322 CDIAGEG---GDKTVVVF 336
            D A       D+T +V 
Sbjct: 283 IDPAVSNTAESDETGIVV 300


>gi|296535576|ref|ZP_06897757.1| terminase large subunit [Roseomonas cervicalis ATCC 49957]
 gi|296264092|gb|EFH10536.1| terminase large subunit [Roseomonas cervicalis ATCC 49957]
          Length = 571

 Score = 58.8 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/330 (12%), Positives = 79/330 (23%), Gaps = 43/330 (13%)

Query: 40  IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS-AGRGIGKTTLNAWMM 98
           IKG    H  +   WQ      +               F+ A+    RG GKTT  A + 
Sbjct: 75  IKGPEAGHPLRLMSWQRFVFANLFGFVERGTTTR---RFRQAVVYVPRGNGKTTFAAPIA 131

Query: 99  LW--LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF-----EMQSLSLHPS 151
           L+   I    G      A +  Q +  L+    + +   P             ++    +
Sbjct: 132 LYLTFIEGEGGAEGYAAAVTRDQAR-ILFDAAQQMVRRSPKFRQAFGVAERANAIYQEQT 190

Query: 152 GWYAELLEQSMGIDSKHYTITC--------RTYSEERPDTFVGPHNTHGMAVFNDEA--- 200
                 +                       RT               H + +    A   
Sbjct: 191 ASRFVPVSSDAKSLDGLNVAVAVCDELASHRTAQVYDVLLTAMGKRRHPLLLSISTATGN 250

Query: 201 -SGTPDIINKSILGFFTE-LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
            SG    +    +          R + +       +  +        ++    + +    
Sbjct: 251 TSGIGRQMWDYAVRVLIGLKQDERLFALVYTVDDEDDPW--------DEASWIKANPSWG 302

Query: 259 EGIDSGFHEGIISRYGLDS---DVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD-- 313
           + +       I+ +   +      A+   L  +              +  +      D  
Sbjct: 303 QAVQPDAIRAIMRQARNNPAQEAAAKTRHLNVWV-GADEALFSTRAWKACVDPGLTLDAL 361

Query: 314 LYAPLIMGCDIAGEGGDKTVVVF---RRGN 340
                 +  D+A    D T +     RRG 
Sbjct: 362 AGQECHVAVDLAAT-TDLTALALVFPRRGP 390


>gi|302389564|ref|YP_003825385.1| hypothetical protein Toce_1000 [Thermosediminibacter oceani DSM
           16646]
 gi|302200192|gb|ADL07762.1| conserved hypothetical protein [Thermosediminibacter oceani DSM
           16646]
          Length = 527

 Score = 58.8 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/253 (10%), Positives = 70/253 (27%), Gaps = 34/253 (13%)

Query: 49  SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKC--------AISAGRGIGKTTLNAWMMLW 100
           +    W   F++ VD          N    +          +   R +G TT +    LW
Sbjct: 15  NDFRLWCKNFVKMVDNKGQEVPFILNEQQLRLLEGLEKYNIVLKSRQLGITTFSIAYCLW 74

Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
           L+  +P ++ + ++ +    ++      + +             S+            + 
Sbjct: 75  LVCNKPNITTMILSYNLESTQHIFERLKAMYY------------SIPDQYKPKIKRDNKM 122

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF--TEL 218
            + +++    I       +         +     +   E +   D   +  L     +  
Sbjct: 123 ELFLENGSRVIV------KIAGNKELGRSFTCEYIHCSEFAFWTDYAQEKGLLGLENSLA 176

Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLE---DWKRYQIDTRTVE---GIDSGFHEGIISR 272
                 I+  +T      FY+I+    +    +K +  +    +     +    E     
Sbjct: 177 KNPDSKIILESTANGLNEFYNIYRKASKGESKYKAFFFNWFENKELFREEYKLAEEWWKA 236

Query: 273 YGLDSDVARIEIL 285
                  +R ++ 
Sbjct: 237 QNHGQRFSRKDLE 249


>gi|266623782|ref|ZP_06116717.1| terminase, large subunit [Clostridium hathewayi DSM 13479]
 gi|288864419|gb|EFC96717.1| terminase, large subunit [Clostridium hathewayi DSM 13479]
          Length = 440

 Score = 58.8 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/245 (10%), Positives = 67/245 (27%), Gaps = 19/245 (7%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
             GRG  K++  +  ++ LI     M  + +      L+ +++ ++   +  L     F 
Sbjct: 167 PGGRGSTKSSFISLEVIDLIMNNDQMHAVVMRQVADTLRGSVYQQILWAIEALELSEEFH 226

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-S 201
                +             +   S    I  R   +      +     +   ++ +E   
Sbjct: 227 ATVSPM------------EITRISTGQKIYFRGADDPGKVKSIKVPFGYIGILWLEELDQ 274

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRL-NGWFYDIFNIPLEDWKRYQIDTRTVE- 259
                  + I           +   + N  +  + W      +P       +     V  
Sbjct: 275 FVGPESVRKIEQSVIRGGEVAYIFKSFNPPKTASNWANKYIKVPKASRLVTESTYLDVPP 334

Query: 260 -GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
             +   F +       ++ D    E +G        +   +  I +    +     +  +
Sbjct: 335 KWLGKPFLDEAEFLKEVNPDAYDNEYMGV-ANGSGGSVFDNVTIRK--ITDEEIAQFDHV 391

Query: 319 IMGCD 323
           + G D
Sbjct: 392 LNGVD 396


>gi|319646329|ref|ZP_08000559.1| phage terminase [Bacillus sp. BT1B_CT2]
 gi|317392079|gb|EFV72876.1| phage terminase [Bacillus sp. BT1B_CT2]
          Length = 425

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 64/227 (28%), Gaps = 38/227 (16%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           +  G G  K+   A  ++  +      + + +       +++ ++ + + ++ L   H  
Sbjct: 24  LVGGYGSSKSYHVALKLILKMLQ-EKRTALVVREVYDTHRDSTFSLLEEIITDLGLDHKI 82

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
              S  +             +   +    I       ++P         +   V+ +E S
Sbjct: 83  RCVSSPM------------QIRFPNGSKIIFKGM---DKPAKLKSI--NNVSIVWVEECS 125

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-------------------- 241
                  K +LG           I+++N      W Y  F                    
Sbjct: 126 EVKYDGFKELLGRLRHPTLKLHMILSTNPVSKGNWSYKHFFKDEANQFFVLDDDELYKKK 185

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
            I   +   +         +   + E +      D D+ RI   G+F
Sbjct: 186 TIIKNNTYYHHSTADDNLFLPESYIEQLEDLKSHDPDLYRIARKGRF 232


>gi|52785229|ref|YP_091058.1| hypothetical protein BLi01464 [Bacillus licheniformis ATCC 14580]
 gi|52347731|gb|AAU40365.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 425

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 64/227 (28%), Gaps = 38/227 (16%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           +  G G  K+   A  ++  +      + + +       +++ ++ + + ++ L   H  
Sbjct: 24  LVGGYGSSKSYHVALKLILKMLQ-EKRTALVVREVYDTHRDSTFSLLEEIITDLGLDHKI 82

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
              S  +             +   +    I       ++P         +   V+ +E S
Sbjct: 83  RCVSSPM------------QIRFPNGSKIIFKGM---DKPAKLKSI--NNVSIVWVEECS 125

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-------------------- 241
                  K +LG           I+++N      W Y  F                    
Sbjct: 126 EVKYDGFKELLGRLRHPTLKLHMILSTNPVSKGNWSYKHFFKDEANQFFVLDDDELYKKK 185

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
            I   +   +         +   + E +      D D+ RI   G+F
Sbjct: 186 TIIKNNTYYHHSTADDNLFLPESYIEQLEDLKSHDPDLYRIARKGRF 232


>gi|52079856|ref|YP_078647.1| Phage terminase, large subunit [Bacillus licheniformis ATCC 14580]
 gi|52003067|gb|AAU23009.1| Phage terminase, large subunit [Bacillus licheniformis ATCC 14580]
          Length = 424

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 64/227 (28%), Gaps = 38/227 (16%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           +  G G  K+   A  ++  +      + + +       +++ ++ + + ++ L   H  
Sbjct: 23  LVGGYGSSKSYHVALKLILKMLQ-EKRTALVVREVYDTHRDSTFSLLEEIITDLGLDHKI 81

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
              S  +             +   +    I       ++P         +   V+ +E S
Sbjct: 82  RCVSSPM------------QIRFPNGSKIIFKGM---DKPAKLKSI--NNVSIVWVEECS 124

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-------------------- 241
                  K +LG           I+++N      W Y  F                    
Sbjct: 125 EVKYDGFKELLGRLRHPTLKLHMILSTNPVSKGNWSYKHFFKDEANQFFVLDDDELYKKK 184

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
            I   +   +         +   + E +      D D+ RI   G+F
Sbjct: 185 TIIKNNTYYHHSTADDNLFLPESYIEQLEDLKSHDPDLYRIARKGRF 231


>gi|225857863|ref|YP_002739373.1| putative phage terminase, large subunit [Streptococcus pneumoniae
           70585]
 gi|303255462|ref|ZP_07341526.1| Phage terminase [Streptococcus pneumoniae BS455]
 gi|303259344|ref|ZP_07345322.1| Phage terminase [Streptococcus pneumoniae SP-BS293]
 gi|303261101|ref|ZP_07347050.1| Phage terminase [Streptococcus pneumoniae SP14-BS292]
 gi|303263429|ref|ZP_07349352.1| Phage terminase [Streptococcus pneumoniae BS397]
 gi|303265593|ref|ZP_07351493.1| Phage terminase [Streptococcus pneumoniae BS457]
 gi|303267848|ref|ZP_07353650.1| Phage terminase [Streptococcus pneumoniae BS458]
 gi|225721021|gb|ACO16875.1| putative phage terminase, large subunit [Streptococcus pneumoniae
           70585]
 gi|302597602|gb|EFL64684.1| Phage terminase [Streptococcus pneumoniae BS455]
 gi|302637938|gb|EFL68424.1| Phage terminase [Streptococcus pneumoniae SP14-BS292]
 gi|302639762|gb|EFL70219.1| Phage terminase [Streptococcus pneumoniae SP-BS293]
 gi|302642544|gb|EFL72889.1| Phage terminase [Streptococcus pneumoniae BS458]
 gi|302645033|gb|EFL75280.1| Phage terminase [Streptococcus pneumoniae BS457]
 gi|302647202|gb|EFL77426.1| Phage terminase [Streptococcus pneumoniae BS397]
          Length = 470

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/299 (12%), Positives = 86/299 (28%), Gaps = 49/299 (16%)

Query: 54  WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113
           WQ+  + ++     + +       +       R  GK+ L     LW +    G++I+  
Sbjct: 43  WQVNLLTSIMAVDKNGLWVHQKFGYSI----PRRNGKSELLYLFELWGL--HNGLNILHT 96

Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173
           A+  +    + + +V ++L  + +    +  S+               +           
Sbjct: 97  AHRISTSH-SSFEKVKRYLEKMGYVDGEDFSSIRAKGQ------ERIELFDGGGIVQFRT 149

Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR-- 231
           RT +                 +  DEA         ++    T+ +     IM       
Sbjct: 150 RTSNGGL--------GEGFDLLVIDEAQEYTTEQESALKYTVTDSSNPIT-IMCGTPPTP 200

Query: 232 ------------------RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE-GIISR 272
                                  + +      ++         +   +    +E  I + 
Sbjct: 201 VSNGTVFTNYRKNCLFGKGKYSGWAEWSVSEEKEIDDVDAWYNSNPSMGYHLNERKIEAE 260

Query: 273 YGLDSDVARIEILGQFPQQEVNNFIP-HNYIEEAMSREAIDDLYAPLIMGCDIAGEGGD 330
            G D     ++ LG +P+    + I    + E  +  +++ DL   L +G      G D
Sbjct: 261 LGDDKLDHNVQRLGYWPEYNQKSAISETEWNELCV--DSMPDLSGKLFVGV---KYGQD 314


>gi|21910482|ref|NP_664750.1| hypothetical protein SpyM3_0946 [Streptococcus pyogenes MGAS315]
 gi|28876230|ref|NP_795461.1| hypothetical protein SpyM3_0946 [Streptococcus pyogenes phage
           315.2]
 gi|28895821|ref|NP_802171.1| hypothetical protein SPs0909 [Streptococcus pyogenes SSI-1]
 gi|21904681|gb|AAM79553.1| conserved hypothetical protein - phage-associated [Streptococcus
           pyogenes MGAS315]
 gi|28811070|dbj|BAC64004.1| hypothetical protein [Streptococcus pyogenes SSI-1]
          Length = 584

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/357 (14%), Positives = 101/357 (28%), Gaps = 36/357 (10%)

Query: 3   RLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAV 62
           R ++  ++++ E  + +   E      NF+    P    GKP         +Q   +  +
Sbjct: 42  RHLNDLKRIDDEDFKFVYLPEKAADPINFIE-ILPDVKTGKPYPLAM----FQKFIIGNL 96

Query: 63  DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW-LISTRPGM---SIICIANSET 118
                   ++S     K  IS  R  GKT L A ++L+  +          + C AN  T
Sbjct: 97  Y-GWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEFLFGHNPSMSRQLFCTANDRT 155

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
           Q K   W    K LS L  +     ++  +          E  +   S+           
Sbjct: 156 QAK-IAWDMAKKQLSSLRAKDVDVRKATKIVRDELKNLHDESYIRALSRDTGAVDGFEPY 214

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR------- 231
                      T+ M    +   G  D     I+     ++ N                 
Sbjct: 215 VGVLDEFAASKTNEMLELLESGQGQLDNPFILIIST-AGMDLNVPMHTIEYPYITKILDG 273

Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI--------- 282
            +    Y  +    ++ +  + ++  ++       E +  +        R          
Sbjct: 274 EITDEGYFGYVAEQDNEEEIKDESNWIKSNPILEVEALHDKLMDYLRTRRRVSLETGEIN 333

Query: 283 ----EILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIM-GCDIAGEGGDKTVV 334
               +    + Q    ++I     E A       D Y   +  G D+     D   +
Sbjct: 334 KVLIKNFNMWRQSSEESYIDKQSWELAQI--DKPDTYKRRVWLGVDVGRV-SDLFAI 387


>gi|326564856|gb|EGE15062.1| phage terminase large subunit [Moraxella catarrhalis 103P14B1]
          Length = 490

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 84/332 (25%), Gaps = 77/332 (23%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  I   R +G TT    M L             IA++    K     +V      LP  
Sbjct: 44  RNIILKARQLGFTTQVCIMQLDSAL-FESQKCALIAHTLHDAKRLFREKVKFAYEHLPDL 102

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                    +  +       ++ M  ++        ++      T    H          
Sbjct: 103 ---------IKLANPIKIETKEEMVFENGGSVTVSTSFRG---GTLQRLH--------VS 142

Query: 199 EASGT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-------- 246
           E        PD   + + G F  ++      + S      G+FY+   I  +        
Sbjct: 143 EFGKICAKYPDKAREIVTGAFEAVSLGGIVTLESTAEGRQGYFYEFSQIAEKLHLSKKTL 202

Query: 247 ---DWKRYQIDTRTVEG--IDSGFHEGIISRY------------GLDSDVARI---EILG 286
              DW+ +       +   + +      +  Y              +           LG
Sbjct: 203 TAQDWRFFFFAWWQNKEYAMTTEPISERLQAYFDSLKAKHGIQLSDEQKAWYQAKERTLG 262

Query: 287 Q-------------FPQQEVNNFIP--HNYIEEAMSREAIDD-LYAPLIMGCDIAGEGGD 330
                         F Q     +      Y+      + + D  + P+    D+     D
Sbjct: 263 DDMKREYPSLPSEAFEQSIEGAYYAKQFAYLYANSRIDKLPDNEHLPIDTYWDLGV--SD 320

Query: 331 KTVVVFRRGNIIEHI-FDWSAKLIQETNQEGC 361
            T + F     I  +  ++      E + EG 
Sbjct: 321 STTIWF-----IRQVGDEFHIVDYYENSGEGL 347


>gi|169343347|ref|ZP_02864353.1| phage terminase, large subunit, pbsx family [Clostridium
           perfringens C str. JGS1495]
 gi|169298524|gb|EDS80608.1| phage terminase, large subunit, pbsx family [Clostridium
           perfringens C str. JGS1495]
          Length = 415

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/264 (12%), Positives = 80/264 (30%), Gaps = 22/264 (8%)

Query: 77  IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136
            ++  +  GRG  K+T  A  +++ +   P  + + +       K++ + ++    + L 
Sbjct: 28  RYRV-VKGGRGSKKSTTTAMWIIYNMMKYPLANTLVLRRVFNTHKDSTYTQLKWAANNLG 86

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
             H +      L             +        I  R   +    T +     +    +
Sbjct: 87  VSHLWHFSKSPL------------EITYKPTGQKILFRGLDDPMSITSITVEIGYLCWAW 134

Query: 197 NDEASGTPDI-----INKSILGFFTELNPNRFWIMTSNTRRLNGWF-YDIFNIPLEDWKR 250
            +EA    +      ++ SI G        +  +   N      W     F+   ++   
Sbjct: 135 FEEAFQVMNEDDFNKVDMSIRGELPMGYFKQITLSF-NPWSEKHWLKKRFFDTKDDNILA 193

Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
              + +  E +     +   S    +    +IE LG++   +   +     +E  + +E 
Sbjct: 194 LTTNYKCNEFLGDDDRKLFESMKENNPRRYKIEGLGEWGIADGLVYENFTELEFDV-KEI 252

Query: 311 IDDLYAPLIMGCDIAGEGGDKTVV 334
                   + G D      D T  
Sbjct: 253 SKRKGIISVFGLDFGYT-NDPTAF 275


>gi|326775607|ref|ZP_08234872.1| phage terminase, large subunit, PBSX family [Streptomyces cf.
           griseus XylebKG-1]
 gi|326655940|gb|EGE40786.1| phage terminase, large subunit, PBSX family [Streptomyces cf.
           griseus XylebKG-1]
          Length = 416

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 70/249 (28%), Gaps = 26/249 (10%)

Query: 79  KCAISAGR-GIGKT-TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136
           +  I++G    GKT +     ++++ +   G  +  IA +     + ++  +       P
Sbjct: 23  RINIASGSIRAGKTISTLLRWIMYVATAPSGGELAVIAKTTNTAASNVFIPLQDPNLFGP 82

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
                     +   +    ++                R                      
Sbjct: 83  LAQHVHYTRGAPTATILGRQV----------------RVIGANDSRAEERLRGMTCAGAL 126

Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED--WKRYQID 254
            DEA+  P      +LG  +          ++N      W    F    ++   + +   
Sbjct: 127 VDEATLVPQEFWTQLLGRMSVPGAKL--FASTNPGSPAHWLKRDFIDRRDELGIRYWHYV 184

Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314
                 +   +   I + +       R  +LG++      +     + EE    + + ++
Sbjct: 185 LDDNPSLGDDYKNSIKNEFVG--LWYRRFVLGEWI-AAEGSIFDM-WDEEKHVVDTLPEI 240

Query: 315 YAPLIMGCD 323
              + +G D
Sbjct: 241 AKWISVGVD 249


>gi|110634235|ref|YP_674443.1| phage terminase [Mesorhizobium sp. BNC1]
 gi|110285219|gb|ABG63278.1| phage Terminase [Chelativorans sp. BNC1]
          Length = 561

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/328 (12%), Positives = 83/328 (25%), Gaps = 44/328 (13%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR---PGM 108
             WQ E +  +   C  + N          I  GRG  KT+L A + L         PG 
Sbjct: 60  DPWQEEIVRVIYGPCDEHGNRIVSD---VVILIGRGNRKTSLGAALSLLHTHGPEAVPGG 116

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
             I  A  + Q +      ++   ++                +          +      
Sbjct: 117 EAIFAAGDKKQAR------IAYQEALGILHAGDADLWKKGQANRATDPTKTIRIQDYRNT 170

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP-DIINKSILGFFTELNPNRFWIMT 227
                 ++ E   +     H         DE        +   I    T+   +    +T
Sbjct: 171 IQFPNGSFLEAISNDHGTQHGRTPAFALCDELHAWARRDLWDVIDTGLTKTANSLRVTIT 230

Query: 228 SNTRRLNGWFYDIFNIPLE----------------------DWKRYQIDTRTVEGIDSGF 265
           +  R  +   +++     +                      DW+   +      GI  G+
Sbjct: 231 TAGRGQDTIGHEVIERARKIARGKIIEPSTLAFLFEVPAEADWRDESLWPLANPGIPHGY 290

Query: 266 --------HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYA 316
                      +        D  ++  L  +  +  + F+  +  +              
Sbjct: 291 PPLDKLRQKARVAEDSPGARDAFKMLHLNMWLDRSTSPFVEMSIYDRGNKPINVEALAGL 350

Query: 317 PLIMGCDIAGEGGDKTVVVFRRGNIIEH 344
           P  +G D+        VV   R   ++ 
Sbjct: 351 PCWIGVDLGMTDDLSAVVAAFRDPDLDE 378


>gi|134295281|ref|YP_001119016.1| hypothetical protein Bcep1808_1170 [Burkholderia vietnamiensis G4]
 gi|134138438|gb|ABO54181.1| protein of unknown function DUF264 [Burkholderia vietnamiensis G4]
          Length = 458

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/304 (11%), Positives = 72/304 (23%), Gaps = 39/304 (12%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +                   +  G   GKT L    +       PG            +
Sbjct: 4   KLTPRQEQAQQVLAGPAKNLMLFGGSRSGKTFLLCRNIAMRAIKAPGSRHGIFRFRALHV 63

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
             ++   +  W  M+                           G              +ER
Sbjct: 64  HESIV--LDTWPKMMKLAF-----PGVRWTMHKGDGYASIHTGGAEDSEVWFGGLDDKER 116

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKS-----ILGFFTELNPNRFWIMT------SN 229
            +            ++ +E+S  P     +          T +       +        N
Sbjct: 117 VEK---ILGKEFATLYFNESSQIPMASVDTALTRLAQKVMTNIEGREPAPLKVRALFDCN 173

Query: 230 TRRLNGWFYDIFNIPLE-----------DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278
                 W Y  F + ++           D+  +QI+        S  +   +   G+   
Sbjct: 174 PPSKAHWTYKRFVLKVDPETGDPLPNPGDYAHFQINPGDNAQNLSADYLDTLK--GMSPR 231

Query: 279 VARIEILGQFPQQEVNNFIPHNYIEE-AMSREAIDDLYAPLIMGCDIAGEGG----DKTV 333
           + +  + G+F     N       IE+     +     +  +++  D +G G     D   
Sbjct: 232 LQKRFLRGEFSDATPNQLFAEETIEKWRHGTDQPLPDFVRVVVAVDPSGSGDVDNADNDA 291

Query: 334 VVFR 337
           +   
Sbjct: 292 IGII 295


>gi|256422889|ref|YP_003123542.1| hypothetical protein Cpin_3879 [Chitinophaga pinensis DSM 2588]
 gi|256037797|gb|ACU61341.1| hypothetical protein Cpin_3879 [Chitinophaga pinensis DSM 2588]
          Length = 471

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 79/280 (28%), Gaps = 24/280 (8%)

Query: 90  KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLH 149
           K+      ++      PG           +L+ + +    K                   
Sbjct: 62  KSWTGCVWLVMACLAYPGTRWFIGREELKRLRASTYQTFLKVCKAYGVN----------K 111

Query: 150 PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209
            + W     +  +   +             R   +    +      + +E          
Sbjct: 112 DNHWDYNGQDHFIQFHNGSRIDMLDLKFVPRDPYYERYGSVEYTGGWIEEGGEVNFGAYD 171

Query: 210 SILGFFTELNPNRF-----WIMTSNTRRL--NGWFYDIFNIPL--EDWKRYQIDTRTVEG 260
           ++         +++       +T N ++   +  F+  F      +  K  Q   +    
Sbjct: 172 TLKSRVGRHLNDKYGLLGRIFVTLNPKKNWCHTVFWKPFKAGQLPDKVKFLQALVQDNPF 231

Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQF-PQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319
           ID G+ + ++S    D    +  + G F    + N  + ++ I + +            I
Sbjct: 232 IDPGYIDNLMSIT--DKVKKQRLLYGNFDYDDDDNALMEYDSIND-IFTNEFVVEGKKYI 288

Query: 320 MGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
              DIA  G DK+VV+   G  +  I  +      +   E
Sbjct: 289 TA-DIARFGSDKSVVMVWNGLRVVEIRKFEKMRTTKVADE 327


>gi|307126229|ref|YP_003878260.1| phage terminase large subunit [Streptococcus pneumoniae 670-6B]
 gi|306483291|gb|ADM90160.1| phage terminase, large subunit, putative [Streptococcus pneumoniae
           670-6B]
 gi|321157162|emb|CBW39147.1| Phage terminase [Streptococcus phage 11865]
          Length = 470

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/299 (12%), Positives = 85/299 (28%), Gaps = 49/299 (16%)

Query: 54  WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113
           WQ+  + ++       +       +       R  GK+ L     LW +    G++I+  
Sbjct: 43  WQINLLTSIMAVDKDGLWVHQKFGYSI----PRRNGKSELLYLFELWGL--HNGLNILHT 96

Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173
           A+  +    + + +V ++L  + +       S+               +           
Sbjct: 97  AHRISTSH-SSFEKVKRYLEKMGYVDGEHFSSIRAKGQ------ERIELFDGGGIVQFRT 149

Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR-- 231
           RT +                 +  DEA         ++    T+ +     IM       
Sbjct: 150 RTSNGGL--------GEGFDLLVIDEAQEYTTEQESALKYTVTDSSNPIT-IMCGTPPTP 200

Query: 232 ------------------RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE-GIISR 272
                                  + +      ++    +    +   +    +E  I + 
Sbjct: 201 VSNGTVFTNYRKTCLFGKGKYSGWAEWSVSEEKEIDDVEAWYNSNPSMGYHLNERKIEAE 260

Query: 273 YGLDSDVARIEILGQFPQQEVNNFIP-HNYIEEAMSREAIDDLYAPLIMGCDIAGEGGD 330
            G D     ++ LG +P+    + I    + E  +  +++ DL   L +G      G D
Sbjct: 261 LGDDKLDHNVQRLGYWPEYNQKSAISETEWNELCV--DSMPDLSGKLFVGV---KYGQD 314


>gi|134299975|ref|YP_001113471.1| hypothetical protein Dred_2129 [Desulfotomaculum reducens MI-1]
 gi|134052675|gb|ABO50646.1| conserved hypothetical protein [Desulfotomaculum reducens MI-1]
          Length = 527

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 65/235 (27%), Gaps = 28/235 (11%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
            +     + + N++  N       IS  R +G TT +    LWL  TR   + + ++ + 
Sbjct: 41  ILNEQQDYFYQNMDKFN------IISKSRQLGFTTYSLAYCLWLACTRANTNCLIVSYNV 94

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
                +++  + +  + +P ++                      + +++    I      
Sbjct: 95  EST-QSIFERLKQMYASIPDKY-----------KPAEKRNNRMELLLENNSRIIV----- 137

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF--TELNPNRFWIMTSNTRRLNG 235
            +               V   E +  PD   +  L          N   I+   T     
Sbjct: 138 -KTAGNKSLGRGMTLQYVLLSEFAFYPDDQQRDSLVSLEQALAKNNDSKIVIETTSNGYN 196

Query: 236 WFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290
           ++  +F    +     +  +       S   +       L     R    G   +
Sbjct: 197 YYQKLFMSAYKG--NSKYKSFFFPWFSSATSKQFKHEIELAEKWFRANNKGHRME 249


>gi|308097723|gb|ADO14402.1| AB1gp31 [Acinetobacter phage AB1]
          Length = 313

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 3/122 (2%)

Query: 233 LNGWFYDIFN-IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
           ++ + +  F   P  +     I+      +     + I  +   D +       G     
Sbjct: 1   MSDFVWQNFVVDPPANTLIRHINYNENPFLSQTALDVIADKKRRDPEGFAHIYDGMPRAD 60

Query: 292 EVNNFIPHNYIEEAMSRE--AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS 349
           +  + I  +++E A+        D      +G D+A  G DK  +V R+G +     +W 
Sbjct: 61  DDMSIIKASWVEAALDAHKLLNLDDTGRSYLGFDVADAGKDKCALVHRKGIVAYWSDEWK 120

Query: 350 AK 351
           A+
Sbjct: 121 AR 122


>gi|294010834|ref|YP_003544294.1| hypothetical protein SJA_C1-08480 [Sphingobium japonicum UT26S]
 gi|292674164|dbj|BAI95682.1| phage-related protein [Sphingobium japonicum UT26S]
          Length = 419

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/274 (12%), Positives = 74/274 (27%), Gaps = 29/274 (10%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             I   R  GK+    + +        G + + +  + T  +++LW +   W+      H
Sbjct: 8   LLIYGNRRGGKSIAILYYIFMRCLLYAGSTHLIVRRTRTACESSLWRQTLNWM----LDH 63

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +     L            +   D+  Y +    +     +       T    ++ +E
Sbjct: 64  MADPSGAPLREKVKLNSSDLIAY-FDNGSYIM----FDGLDENRLDKVLGTEYQTIWMNE 118

Query: 200 ASGTPDIINKSILGFFTELNPN--------RFWIMTSNTRRLNGWFYDIFNIPLEDWKRY 251
            S       + + G       +        R  +   N R  + W   +F          
Sbjct: 119 VSEFDWSDVQQLAGCLNGSPTHNDNGLPIVRKMVFDCNPRFESDWDCKVFRDGQNPVNNQ 178

Query: 252 ------QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA 305
                 +     V+ +D  +          D       + G +  Q  N     +  E  
Sbjct: 179 PLNDVQKYGKVKVQNVDEEYL---AIYANADPRTRARYLDGDWSAQNDNAIFDLDNFERN 235

Query: 306 MSREAIDDLYAPLIMGCDIAGEG---GDKTVVVF 336
                       +++G D A +     D T ++ 
Sbjct: 236 RRFGIFAKDLERIVIGVDPASKSKKESDLTGIIV 269


>gi|187935777|ref|YP_001886932.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
           B str. Eklund 17B]
 gi|187723930|gb|ACD25151.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
           B str. Eklund 17B]
          Length = 450

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/261 (9%), Positives = 75/261 (28%), Gaps = 40/261 (15%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
           ++    ++ H    + N +   +      G G  K+   A+ ++  +      + + +  
Sbjct: 1   MDIEREINPHFEDYIFNWDYKFYFLV--GGYGSSKSYNTAFKLILKLLE-EKRTALVVRE 57

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
               ++++ ++ + + ++ +      + ++  +             +   +    I    
Sbjct: 58  VYDTMRDSCYSLLEEIITEMELDDTIQCKTSPM------------QIRFPNGSKIIFKGM 105

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
              ++P         +   V+ +E S       K +LG           I+T+N    + 
Sbjct: 106 ---DKPAKLKSI--NNVSIVWIEECSEVKYEGFKELLGRLRHPTLKLHMILTTNPVSKSN 160

Query: 236 WFYDIF--------------------NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275
           W Y  F                     +   +   +         +   +   +      
Sbjct: 161 WCYKYFFIDKKKKLFVLDDKDLYKKRIVIKNNTYYHHSLADDNYFLPKSYILQLDDLKTH 220

Query: 276 DSDVARIEILGQFPQQEVNNF 296
           D D+ R+   GQF        
Sbjct: 221 DKDLWRVARKGQFGTNGKKVL 241


>gi|313885555|ref|ZP_07819305.1| putative phage terminase, large subunit [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619285|gb|EFR30724.1| putative phage terminase, large subunit [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 470

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/273 (10%), Positives = 66/273 (24%), Gaps = 43/273 (15%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ + ++ +       +       +       R  GKT +   + +W +    G++I+ 
Sbjct: 42  EWQEQLLKPIMAIDEEGLWQHQKFGYSI----PRRNGKTEIVYILEIWALEH--GLNILH 95

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            A+  +    + + ++ K+   +               S          +          
Sbjct: 96  TAHRISTSH-SSFEKMKKYFESMG------YVEGEDFASIKAKGQERIELLKTDGIIQFR 148

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232
            RT S                 +  DEA         ++    ++ +     +M      
Sbjct: 149 TRTSSGGL--------GEGFDLLVIDEAQEYTIEQESALKYTVSDSSNPMT-VMCGTPPT 199

Query: 233 L---------------------NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271
                                 +GW         +                      I +
Sbjct: 200 PVSSGTVFTDYRKKVLFGQSKYSGWAEWSVTEMTDIHDVEAWYECNPSMGYHLNERKIEA 259

Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE 304
             G D     ++ LG +P     + I     +E
Sbjct: 260 ELGEDKLDHNVQRLGYWPTYNQKSAISETEWKE 292


>gi|307710012|ref|ZP_07646457.1| phage Terminase family protein [Streptococcus mitis SK564]
 gi|307619197|gb|EFN98328.1| phage Terminase family protein [Streptococcus mitis SK564]
          Length = 470

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/300 (12%), Positives = 83/300 (27%), Gaps = 47/300 (15%)

Query: 54  WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113
           WQ   +  +     + +       +       R  GK+ +   + +W +    G++I+  
Sbjct: 43  WQKNLLLPMMAVDKNGLWVHQKFGYSI----PRRNGKSEILYILEIWGL--HKGLNILHT 96

Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173
           A+  +    + + +V ++L  + +    +  S+               +           
Sbjct: 97  AHRISTSH-SSFEKVKRYLEKMGYVDGEDFNSIRAKGQ------ERIELYSTGGVIQFRT 149

Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233
           RT +                 +  DEA         ++    T+       IM       
Sbjct: 150 RTSNGGL--------GEGFDMLIIDEAQEYTTEQESALKYTVTDSENPIT-IMCGTPPTP 200

Query: 234 NGW--------------------FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE-GIISR 272
                                  + +      ++    +    +   +    +E  I + 
Sbjct: 201 VSSGTVFTKYRETCLFGKGKYSGWAEWSVSDEKEIDDVEAWYNSNPSMGYHLNERKIEAE 260

Query: 273 YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKT 332
            G D     I+ LG +P     + I      E +  + I +L   L +G      G D T
Sbjct: 261 LGEDKLDHNIQRLGFWPTYNQKSAISETEWNE-LKVDDIPELSGKLSVGI---KYGQDGT 316


>gi|282933181|ref|ZP_06338568.1| putative phage terminase, large subunit [Lactobacillus jensenii
           208-1]
 gi|281302685|gb|EFA94900.1| putative phage terminase, large subunit [Lactobacillus jensenii
           208-1]
          Length = 571

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/307 (15%), Positives = 97/307 (31%), Gaps = 61/307 (19%)

Query: 69  NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP----GMSIICIANSETQLKNTL 124
             ++ +    K  IS  R  GKT L A + L+++  +     G  I C AN   Q K   
Sbjct: 89  RKSDPHRKFKKMFISMARKNGKTILVAGIALYILLYQKYPVRGKQIYCAANKRDQAK-VA 147

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP--D 182
           +  ++ +L  L +   F  +   +                  +      +T S  +P  +
Sbjct: 148 FNYINNFLVPLRNDSPFVKRKTQMK-----------------RDEITDAKTGSFIKPLSN 190

Query: 183 TFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN-TRRLNGWFYD-- 239
              G    +      DE + + DI     +   + +  +   ++ S  +  +NGWF++  
Sbjct: 191 DKNGIQGLNTTLAIFDEQADSNDITVYDAVEKSSRMQKDPLMLLISTVSPNINGWFHEMI 250

Query: 240 --------------------IFNIPLEDWKRYQIDT-RTVEGIDSGFHEGII-------- 270
                                +    ED      +  ++   +        +        
Sbjct: 251 YQYVEQMVKGDVVDDETMVLWYEQESEDEIADTANWIKSNPILYDKDIRETLLPTLIQDW 310

Query: 271 --SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD-LYAPLIMGCDIAGE 327
             ++       A+I     + Q   N++I        +  +   D     + +G D+A  
Sbjct: 311 KTAQAMGRETKAKIYNFNMWQQANENSYIKVQDW-ANIKVDKTPDLYGREVYIGMDLART 369

Query: 328 GGDKTVV 334
           G D + V
Sbjct: 370 G-DLSAV 375


>gi|265756326|ref|ZP_06090655.1| PBSX family phage terminase, large subunit [Bacteroides sp.
           3_1_33FAA]
 gi|263233917|gb|EEZ19526.1| PBSX family phage terminase, large subunit [Bacteroides sp.
           3_1_33FAA]
          Length = 422

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/240 (9%), Positives = 58/240 (24%), Gaps = 26/240 (10%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
             F   I+ GRG GK+   +  +              +   E  +   L+   +   + +
Sbjct: 16  EKFIILITGGRGSGKSFNASTFI--------ERLTFEMTPVEKIVHQILYTRYTMVSAGM 67

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
                   +      + ++       +   +K   +     +     T            
Sbjct: 68  SIIPEMMEKIDLDGTTKYFKTTKTDIVNKMTKSRIMFRGIKTSSGNQTAKLKSIQGITTF 127

Query: 196 FNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE---DWKRY 251
             DEA     +     I+    +       I+  N    N + Y  +        +    
Sbjct: 128 VCDEAEEWTSEDEFDKIMLSIRKKGIQNRIIIIMNPCDSNHFIYKKYIEKTHKLVEIDGV 187

Query: 252 QIDTRTVEGI--------------DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297
           Q+   T   +                 F + +      + +     ++G++         
Sbjct: 188 QVQISTHPNVLHIHTTYFDNLDNLSPEFLKEVEDMKVGNPEKYAHVVIGRWADVAEGAVF 247


>gi|256751050|ref|ZP_05491933.1| conserved hypothetical protein [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256750160|gb|EEU63181.1| conserved hypothetical protein [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 259

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 88/286 (30%), Gaps = 44/286 (15%)

Query: 11  LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70
            E++L   +++++ +L  KNFV      G    P              +     H   N+
Sbjct: 8   TEEKLQ--IINSDPILWLKNFVKIVNNQGEL-VPF------------IVNEEQEHFIKNM 52

Query: 71  NNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK 130
              N       I   R IG TTL+  +ML+   T+P    + ++      +N  +  +  
Sbjct: 53  GKYN------IILKARQIGFTTLSLGLMLYYACTKPNTHYLMLSYDTVSTQNI-FNRLKD 105

Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
               +P ++                 + +  + + +          S +         + 
Sbjct: 106 MYETIPDKY-----------KVPQKRMNKLELLLQNGSRI------SVKTASVKELGRSF 148

Query: 191 HGMAVFNDEASGTPDIINKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
               +   E +  P    +  L    +    N +   I+ S    +   FY IF    + 
Sbjct: 149 SLQMIHCSEFAFWPAEQQERGLIALEQALLKNEDSKIIIESTANGIGNNFYKIFTDAQKG 208

Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293
             + +        +  G  +   S Y +  +  R +  G+    + 
Sbjct: 209 --KSKYKAFFYSWLGEGAKKQFKSEYKIAEEWYRSQNHGRRQSSDD 252


>gi|290959240|ref|YP_003490422.1| phage terminase [Streptomyces scabiei 87.22]
 gi|260648766|emb|CBG71879.1| putative phage terminase [Streptomyces scabiei 87.22]
          Length = 504

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/298 (10%), Positives = 66/298 (22%), Gaps = 32/298 (10%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             WQ   +                  F+ A++  R  GK  +     LW +       I+
Sbjct: 36  DPWQQHVLRVGMAEKADGSWA----AFEVAVNVPRQNGKGGIIEARELWGLFIGGEELIL 91

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A+     KN  +  + + +   P  H    Q        W        +   ++    
Sbjct: 92  HSAHEFKTAKNA-FRRIERLIRGCPDLHKRVKQYRQTVGEEWIELHDGAMLRFIARSKGS 150

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF--------FTELNPNRF 223
                              + M       +   D     +              L     
Sbjct: 151 GRGFSGHSNMLDEDMILGDNEMDALLPTMAAIDDPQIWYLGSAGIGAPSVQLARLRRRAL 210

Query: 224 WIMTSNTRRLNGWFYDI---------------FNIPLEDWKRYQIDTRTVEGIDSGFHEG 268
             +       +  + +                 +    D    + +      +       
Sbjct: 211 KAIEGGVPDPSLAYMEWSADLHVKECPKDCTAHDDAGSDAAVLKSNPAVGYRLSLAKVAN 270

Query: 269 IISRYGLDSDVARIEILGQFPQQEVNN--FIPHNYIEEAMSREAIDDLYAPLIMGCDI 324
             +    D        +G++P  E +    I  +  E     E+  D   P+    D+
Sbjct: 271 ERATLSADGYARERLGVGEYPSDEEDAWQVIGRDVWEALADEESQPD--DPVAFAVDV 326


>gi|308174980|ref|YP_003921685.1| terminase large subunit [Bacillus amyloliquefaciens DSM 7]
 gi|307607844|emb|CBI44215.1| putative terminase large subunit [Bacillus amyloliquefaciens DSM 7]
          Length = 577

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/336 (11%), Positives = 91/336 (27%), Gaps = 60/336 (17%)

Query: 43  KPLEHFSQPHR---WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99
            P     +P +   +Q   +  +      N         K  IS  R  GK+ L A + L
Sbjct: 65  LPDISTGKPTKLALFQKFIVYMLYAW--RNKETGFRRFTKAYISMARKGGKSVLVAGLAL 122

Query: 100 WLISTRP----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
           + +           I   ANS  Q +   +  +S  L  +  +     +   +       
Sbjct: 123 YELIYGESPKFDRQIYATANSRGQARTV-FKMISMQLKKIRSQSKAIRKWTKI------- 174

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
             ++  +        I   +   +  D+       + +    DE     +     +L   
Sbjct: 175 --IQNEIRYLKDDCVIMPLSRDTDNLDSL------NVLIGILDEYHTASNTKMMEVLESS 226

Query: 216 TELNPNRFWIMTSNT-----------------------RRLNGWFYDIFNIPLEDWKRYQ 252
                    ++ S                         +    +F  ++    E+    +
Sbjct: 227 QGQQDQGLILIISTAGFKLNGPMYSQEYPYVDDILSGRKENENYFAIVYEQDDEEEIYDE 286

Query: 253 IDT------RTVEGIDSGFHEGIISRYGL-----DSDVARIEILGQFPQQEVNNFIPHNY 301
                      VEG+       +  +        D +   ++    +      +F+    
Sbjct: 287 STWIKSNPLLEVEGLQKKLLTNLRKKLKEALDKDDLNGTLVKNFNLWQSASSESFVNGRD 346

Query: 302 IEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFR 337
            +      A + +  P+ +G D++    D + + F 
Sbjct: 347 WKSCGVDTAPEIMGKPVYIGVDLSRT-EDLSALSFI 381


>gi|302382339|ref|YP_003818162.1| phage DNA packaging protein [Brevundimonas subvibrioides ATCC
           15264]
 gi|302192967|gb|ADL00539.1| phage DNA packaging protein [Brevundimonas subvibrioides ATCC
           15264]
          Length = 447

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/289 (10%), Positives = 68/289 (23%), Gaps = 41/289 (14%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI--------------SAGRGIGKTTLNAWM 97
             WQ            +        + K A+                GRG GKT   A+ 
Sbjct: 24  RSWQERLAFIATYAPENGWKTIMMAMSKLALHQNPPEEPWRTWVMLGGRGSGKTFAGAFW 83

Query: 98  MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
            L  ++ R   +   +  +   ++  +    S   +M         ++            
Sbjct: 84  -LHSLAIRNNFTFALVGPALHDVREVMVEGPSGLKAMAEGADRPRWEAGRKRL------- 135

Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFF 215
                      +  +         +           A + DE      P+ +  ++    
Sbjct: 136 ----------VWPYSGAVAYAFSAEDPDSLRGPQFHAAWADEFCAWRAPERVLSNLRFGL 185

Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275
                    ++ + T R       +   P       +  TR         +   +     
Sbjct: 186 RRG--PDPQLVVTTTPRPIAALRTLLAEPGTR--TTRGATRDNAANLPPIYLDHLRDLYA 241

Query: 276 DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI 324
            + +   E+ G   +           I  A  R    +    +I+  D 
Sbjct: 242 GTRLEAQEMEGLVVEG-EGALFRAEDIAAA--RGERPERLEKIIVAVDP 287


>gi|281416387|ref|YP_003347411.1| terminase large subunit [Streptococcus phage Abc2]
 gi|226823038|gb|ACO83165.1| terminase large subunit [Streptococcus phage Abc2]
          Length = 623

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/331 (12%), Positives = 95/331 (28%), Gaps = 48/331 (14%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
                   +Q   WQ   +  +    ++N         +  +S GRG GKT L A +  +
Sbjct: 88  PNVDTGEPTQLMPWQKFILCMLFGWRNANGGKRFS---RAIVSVGRGQGKTYLMAILTAY 144

Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
                     + ++N +  + +  + + +K L  +       +Q+          E    
Sbjct: 145 SYFIE----SLGLSNQDYLVTSINFKQTNKLLGYIKSMMKQIIQNEPFKSLANETE---L 197

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTEL 218
            +  D                ++     + H      DE       D ++K + G     
Sbjct: 198 GLHSDQVIMKANNNVLRAISAESGQYD-SFHFTTAIFDEIGEIETRDAVSKIVSGQVKVP 256

Query: 219 NPNRFWIMTSNTR----------------------RLNGWFYDIFNIPLEDWKRYQIDT- 255
           N     I T+                           + +   +++    D         
Sbjct: 257 NRQFIQISTAYPNPSVPFREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPETWA 316

Query: 256 RTVEGIDSGFHEGIISRYGLDS----------DVARIEILGQFPQQEVNNFIPHNYIEEA 305
           ++   +D       + +  +D              +++ +  +   + N+F+    IE A
Sbjct: 317 KSNPLLDLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADSNSFLDLKDIENA 376

Query: 306 MSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
           +  E        + +G D +    D T + F
Sbjct: 377 VIPEFDI-RGKRVYVGLDASMF-SDNTAIGF 405


>gi|312062887|gb|ADQ12749.1| putative DNA maturase B [Acinetobacter phage phiAB1]
          Length = 645

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/266 (11%), Positives = 71/266 (26%), Gaps = 37/266 (13%)

Query: 6   STDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVH 65
                 E      LM A   LSF++F          G     F        E  E +  +
Sbjct: 24  PELIPKEDREMFALMFAGLFLSFRDFA-------ELGMAYLGFKM-----SEIQEDIADY 71

Query: 66  CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW 125
                       ++  + A RG  K+TL A   +W +  RP    + ++    Q  +++ 
Sbjct: 72  MQHG------YKYRM-VQAQRGQAKSTLAALYCIWRLIQRPKDRCLIVSAGGDQA-DSIA 123

Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185
             +++ ++      W    +            +   +    K  +++    S +      
Sbjct: 124 LIITRIINQWDILCWMRPDTTRGDRDSAKNYDIHCDLKGIDKSASVSSVGISAQLA---- 179

Query: 186 GPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT-------SNTRRLNGWFY 238
                    +  D+     + + ++              I            +  +  + 
Sbjct: 180 ---GKRADFLLADDIEVMRNSMTQTEREKLALQTREFSAICIHGDIMYLGTPQTKDSIYR 236

Query: 239 DIFNIPLEDWKRYQIDTRTVEGIDSG 264
           +   +P   +       R     +  
Sbjct: 237 E---LPRRGFSVRVWTGRYPTNEELE 259


>gi|154248423|ref|YP_001419381.1| hypothetical protein Xaut_4503 [Xanthobacter autotrophicus Py2]
 gi|154162508|gb|ABS69724.1| protein of unknown function DUF264 [Xanthobacter autotrophicus Py2]
          Length = 457

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 77/287 (26%), Gaps = 26/287 (9%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST----RPGMSIICIANS 116
           AV +H +      + + FK  + + R  GKT      ++               + ++  
Sbjct: 4   AVPLHAYQRKWLLDGSRFKAGMFS-RQSGKTFTTTLEIVDDCFKAAVKTRRERWVILSRG 62

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
           E Q +  +   + +  +             + +         +           IT    
Sbjct: 63  ERQAREAMEEGIKRHAAAYQLGF-----KTAEYDWQGDEGSHKALEVTLPHGSRITA--- 114

Query: 177 SEERPDTFVGPHNTHGMAVFNDEAS--GTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
               P             VF DE +       I  ++    ++        +TS      
Sbjct: 115 ---LPANPDTARGFSAN-VFLDEFAIHKDSKAIWGALFPVISKNGLRLR--VTSTPNGKG 168

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294
             FY+I     E W R+ +D               +     D D+   E   ++  +   
Sbjct: 169 NKFYEIMTAADEVWSRHVVDIYQAVADGLPRDIDELRAGLADDDLWAQEYELKWLDEAS- 227

Query: 295 NFIPHNYIEEAMSR---EAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
            ++ ++ I         +          +G DI     D  V+    
Sbjct: 228 AWLSYDLISSCEDERAGDPALYQGGVCFVGRDIGRR-QDLHVIWVWE 273


>gi|168211354|ref|ZP_02636979.1| putative phage terminase, large subunit [Clostridium perfringens B
           str. ATCC 3626]
 gi|170710621|gb|EDT22803.1| putative phage terminase, large subunit [Clostridium perfringens B
           str. ATCC 3626]
          Length = 566

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/341 (11%), Positives = 90/341 (26%), Gaps = 60/341 (17%)

Query: 28  FKNF----VMRFFPWGIK-----GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78
              F    V+ F+ W        G       +   WQL     +      N         
Sbjct: 48  PYYFDLDEVLDFYEWARLFKHRTGIVKGQRIEIIPWQLFIAGNL--FGWKNKKTDFRRFK 105

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           K  IS GR   K+ L + +  +        S I +        + ++ E++  LS    +
Sbjct: 106 KAFISVGRKNAKSELLSLIATYECFITDDNSEIYLTGWNKDGSDIVYREINYHLSHPYEK 165

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
            +F+ +  + +                   +  +         +     +  +      D
Sbjct: 166 DFFKGKYKTAYGKI---------------THLKSGSFIQPLSREAKNTDNANNPSLAIVD 210

Query: 199 EA-SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN--------------- 242
           E        I  ++    T  N     I T+ T       ++                  
Sbjct: 211 EYKDHVTSEIYDNLNTGMTRPNALIVIISTAGTNINCPMMFEYKYVSKVLNPDIKDVEND 270

Query: 243 ---------IPLEDWKRYQIDTRTVEGID-SGFHEGIIS-------RYGLDSDVARIEIL 285
                       +D K  ++  +    +  + F    +               + + + +
Sbjct: 271 EYFIMICELEKDDDIKDEKVWPKANPIVTLTEFGMEKLRGDLKVALDAPEKMRIFKTKNM 330

Query: 286 GQFPQQEVNNFIPHNYIEEA-MSREAIDDLYAPLIMGCDIA 325
             +     + ++     E+A   +   D    P I+G D++
Sbjct: 331 NIWCDDREDGYMNMEKWEKAETEKNLEDFTGEPCILGVDLS 371


>gi|330858353|ref|YP_004414707.1| Gp2 [Propionibacterium phage PAS50]
 gi|260066564|gb|ACX30842.1| Gp2 [Propionibacterium phage PAS50]
          Length = 503

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/352 (12%), Positives = 94/352 (26%), Gaps = 47/352 (13%)

Query: 39  GIKGKPLEHFSQ--PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
           G     L       P  WQ + ++                +    +   R  GK  +   
Sbjct: 23  GNDAGELGRAYGLTPDPWQQQVLDDWLAV--GGNGRLASGVCGVFV--PRQNGKNAILEI 78

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAE--VSKWLSMLPHRHWFEMQSLSLHPSGWY 154
           + L+  + + G  I+  A+     +          +     P  +   ++S+        
Sbjct: 79  VELFKATIQ-GRRILHTAHELKSARKAFMRLRSFFENERQFPDLYR-MVKSIRATNGQEA 136

Query: 155 AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF 214
             L         +          E    +           +  DEA    D   +++L  
Sbjct: 137 IVLHHPDCATFERKCGCPGWGSVEFVARSRGSARGFTVDDLVCDEAQELSDEQLEALLPT 196

Query: 215 FT-ELNPNRFWIMTSNTR------------------RLNGWFYDIFNIPLE--------D 247
            +   + +   I                            + +  F+IP E         
Sbjct: 197 VSAAPSGDPQQIFLGTPPGPLADGSVVLRLRGQALSGGKRFAWTEFSIPDESDPDDVSRQ 256

Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ-EVNNFIPHN-YIEEA 305
           W++   DT    G    F         + +     E LG + +     + +P + + + A
Sbjct: 257 WRKLAGDTNPALGRRLNFGTVSDEHESMSAAGFARERLGWWDRGQSAASVVPADKWAQSA 316

Query: 306 MSREAIDDLYAPLIMGCDIAGEGGDKTVVV----FRRGNIIEHIFDWSAKLI 353
           +   ++       + G   +  G D+  +        G  +E I   S  ++
Sbjct: 317 VDEASLV---GGKVFGVSFSRSG-DRVALAGAGRTDAGVHVEVIDGLSGTIV 364


>gi|221314872|ref|ZP_03596677.1| hypothetical protein BsubsN3_14247 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
          Length = 433

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 64/227 (28%), Gaps = 38/227 (16%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           +  G G  K+   A  ++  +  R   + + I       +++ ++   + +S L   H  
Sbjct: 25  LVGGYGSSKSYHVALKIVLKLL-REKRTALVIREVYDTHRDSTFSLFDELVSDLKLDHIV 83

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
              S  +             +   +    I       ++P         +   ++ +E S
Sbjct: 84  RCVSSPM------------QIRFSNGSRIIFKGM---DKPAKLKSI--NNISLIWIEECS 126

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-------------------- 241
                  K +LG           I+++N    + W +  F                    
Sbjct: 127 EVKYEGFKELLGRLRHPTLPLHMILSTNPVGEDNWTFKHFFKDDREKRFVLDDKELYEKR 186

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
            I   D   +         +   + + +      D D+ RI   G F
Sbjct: 187 IIVSNDTYYHHSTADDNLFLPESYVQQLEELKEYDPDLYRIARKGHF 233


>gi|16079672|ref|NP_390496.1| phage-related terminase large subunit; skin element [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221310548|ref|ZP_03592395.1| hypothetical protein Bsubs1_14326 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221319794|ref|ZP_03601088.1| hypothetical protein BsubsJ_14163 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324073|ref|ZP_03605367.1| hypothetical protein BsubsS_14297 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|1176739|sp|P45916|YQAT_BACSU RecName: Full=Uncharacterized protein yqaT; AltName: Full=ORF50
 gi|1217848|dbj|BAA06933.1| ORF50 [Bacillus subtilis]
 gi|1303739|dbj|BAA12395.1| YqaT [Bacillus subtilis]
 gi|2635064|emb|CAB14560.1| putative phage-related terminase large subunit; skin element
           [Bacillus subtilis subsp. subtilis str. 168]
          Length = 431

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 64/227 (28%), Gaps = 38/227 (16%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           +  G G  K+   A  ++  +  R   + + I       +++ ++   + +S L   H  
Sbjct: 23  LVGGYGSSKSYHVALKIVLKLL-REKRTALVIREVYDTHRDSTFSLFDELVSDLKLDHIV 81

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
              S  +             +   +    I       ++P         +   ++ +E S
Sbjct: 82  RCVSSPM------------QIRFSNGSRIIFKGM---DKPAKLKSI--NNISLIWIEECS 124

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-------------------- 241
                  K +LG           I+++N    + W +  F                    
Sbjct: 125 EVKYEGFKELLGRLRHPTLPLHMILSTNPVGEDNWTFKHFFKDDREKRFVLDDKELYEKR 184

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
            I   D   +         +   + + +      D D+ RI   G F
Sbjct: 185 IIVSNDTYYHHSTADDNLFLPESYVQQLEELKEYDPDLYRIARKGHF 231


>gi|294778788|ref|ZP_06744207.1| phage terminase, large subunit, PBSX family [Bacteroides vulgatus
           PC510]
 gi|294447444|gb|EFG16025.1| phage terminase, large subunit, PBSX family [Bacteroides vulgatus
           PC510]
          Length = 422

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/240 (9%), Positives = 58/240 (24%), Gaps = 26/240 (10%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
             F   I+ GRG GK+   +  +              +   E  +   L+   +   + +
Sbjct: 16  EKFIILITGGRGSGKSFNASTFI--------ERLTFEMTPVEKIVHQILYTRYTMVSAGM 67

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
                   +      + ++       +   +K   +     +     T            
Sbjct: 68  SIIPEMMEKIDLDGTTKYFKTTKTDIVNKMTKSRIMFRGIKTSSGNQTAKLKSIQGITTF 127

Query: 196 FNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE---DWKRY 251
             DEA     +     I+    +       I+  N    N + Y  +        +    
Sbjct: 128 VCDEAEEWTSEDEFDKIMLSIRKKGIQNRIIIIMNPCDSNHFIYKKYIEKTHKLVEIDGV 187

Query: 252 QIDTRTVEGI--------------DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297
           Q+   T   +                 F + +      + +     ++G++         
Sbjct: 188 QVQISTHPNVLHIHTTYFDNLDNLSPEFLKEVEDMKVSNPEKYAHVVIGRWADVAEGAVF 247


>gi|256851371|ref|ZP_05556760.1| phage terminase [Lactobacillus jensenii 27-2-CHN]
 gi|260660794|ref|ZP_05861709.1| terminase-large subunit [Lactobacillus jensenii 115-3-CHN]
 gi|256616433|gb|EEU21621.1| phage terminase [Lactobacillus jensenii 27-2-CHN]
 gi|260548516|gb|EEX24491.1| terminase-large subunit [Lactobacillus jensenii 115-3-CHN]
          Length = 571

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/307 (15%), Positives = 98/307 (31%), Gaps = 61/307 (19%)

Query: 69  NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP----GMSIICIANSETQLKNTL 124
             ++S+    K  IS  R  GKT L A + L+++  +     G  I C AN   Q K   
Sbjct: 89  RKSDSHRKFKKMFISMARKNGKTILVAGIALYILLYQKYPVRGKQIYCAANKRDQAK-VA 147

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP--D 182
           +  ++ +L  L +   F  +   +                  +      +T S  +P  +
Sbjct: 148 FNYINNFLVPLRNDSPFVKRKTQMK-----------------RDEITDAKTGSFIKPLSN 190

Query: 183 TFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN-TRRLNGWFYD-- 239
              G    +      DE + + DI     +   + +  +   ++ S  +  +NGWF++  
Sbjct: 191 DKNGIQGLNTTLAIFDEQADSNDITVYDAVEKSSRMQKDPLMLLISTVSPNINGWFHEMI 250

Query: 240 --------------------IFNIPLEDWKRYQIDT-RTVEGIDSGFHEGII-------- 270
                                +    ED      +  ++   +        +        
Sbjct: 251 YQYVEQMVKGDVVDDETMVLWYEQESEDEIADTANWIKSNPILYDKDIRETLLPTLIQDW 310

Query: 271 --SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD-LYAPLIMGCDIAGE 327
             ++       A+I     + Q   N++I        +  +   D     + +G D+A  
Sbjct: 311 KTAQAMGRETKAKIYNFNMWQQANENSYIKVQDW-ANIKVDKTPDLYGREVYIGMDLART 369

Query: 328 GGDKTVV 334
           G D + V
Sbjct: 370 G-DLSAV 375


>gi|261340356|ref|ZP_05968214.1| putative terminase large subunit protein [Enterobacter cancerogenus
           ATCC 35316]
 gi|288317447|gb|EFC56385.1| putative terminase large subunit protein [Enterobacter cancerogenus
           ATCC 35316]
          Length = 490

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/339 (12%), Positives = 80/339 (23%), Gaps = 90/339 (26%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  I   R +G TT    + L   +         IA++    K     +V      LP  
Sbjct: 48  RNIILKARQLGFTTEVCIIQL-DAALFESAKCALIAHTLNDAKRLFREKVKYAYDKLPA- 105

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                    +  +   +      +            ++      T    H          
Sbjct: 106 --------EIKAANPASNDSSGELVFKKGGSLYVSTSFRG---GTLRYLH--------VS 146

Query: 199 EASGT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-------- 246
           E        PD   + + G F  ++   F  + S      G+F+D      +        
Sbjct: 147 EFGKICAKYPDKAREIVTGAFEAVSTGCFATIESTAEGRAGYFFDYCQTAEKALLQGKPL 206

Query: 247 ---DWKRYQIDTRTVEGIDSGFHE------------------------------------ 267
              DWK +               E                                    
Sbjct: 207 SALDWKFFFFSWWKNPQYAIDPVEPLPQRLVDYFAEMEAKHGVVVNDRQKAWYYAKEKTL 266

Query: 268 ---GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI 324
                     + ++  +  + G +  ++                +  D+ + P+    DI
Sbjct: 267 GDDMKREYPTIPAEAFQQSVEGAYYAKQFRWLYT-----NKRIGQIPDNSHLPVHTFWDI 321

Query: 325 AGEGGDKTVVVFRR--GNIIEHIFDWSAKLIQETNQEGC 361
               GD T + F R  GN    I         E + EG 
Sbjct: 322 GV--GDSTAIWFVREVGNEFHII------DYYENSGEGL 352


>gi|270296849|ref|ZP_06203048.1| PBSX family phage terminase, large subunit [Bacteroides sp. D20]
 gi|270272836|gb|EFA18699.1| PBSX family phage terminase, large subunit [Bacteroides sp. D20]
          Length = 422

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/240 (9%), Positives = 58/240 (24%), Gaps = 26/240 (10%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
             F   I+ GRG GK+   +  +              +   E  +   L+   +   + +
Sbjct: 16  EKFIILITGGRGSGKSFNASTFI--------ERLTFEMTPVEKIVHQILYTRYTMVSAGM 67

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
                   +      + ++       +   +K   +     +     T            
Sbjct: 68  SIIPEMMEKIDLDGTTKYFKTTKTDIVNKMTKSRIMFRGIKTSSGNQTAKLKSIQGITTF 127

Query: 196 FNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE---DWKRY 251
             DEA     +     I+    +       I+  N    N + Y  +        +    
Sbjct: 128 VCDEAEEWTSEDEFDKIMLSIRKKGIQNRIIIIMNPCDSNHFIYKKYIEKTHKLVEIDGV 187

Query: 252 QIDTRTVEGI--------------DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297
           Q+   T   +                 F + +      + +     ++G++         
Sbjct: 188 QVQISTHPNVLHIHTTYFDNLDNLSPEFLKEVEDMKVSNPEKYAHVVIGRWADVAEGAVF 247


>gi|254884635|ref|ZP_05257345.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254837428|gb|EET17737.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 422

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/240 (9%), Positives = 58/240 (24%), Gaps = 26/240 (10%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
             F   I+ GRG GK+   +  +              +   E  +   L+   +   + +
Sbjct: 16  EKFIILITGGRGSGKSFNASTFI--------ERLTFEMTPVEKIVHQILYTRYTMVSAGM 67

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
                   +      + ++       +   +K   +     +     T            
Sbjct: 68  SIIPEMMEKIDLDGTTKYFKTTKTDIVNKMTKSRIMFRGIKTSSGNQTAKLKSIQGITTF 127

Query: 196 FNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE---DWKRY 251
             DEA     +     I+    +       I+  N    N + Y  +        +    
Sbjct: 128 VCDEAEEWTSEDEFDKIMLSIRKKGIQNRIIIIMNPCDSNHFIYKKYIEKTHKLVEIDGV 187

Query: 252 QIDTRTVEGI--------------DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297
           Q+   T   +                 F + +      + +     ++G++         
Sbjct: 188 QVQISTHPNVLHIHTTYFDNLDNLSPEFLKEVEDMKVSNPEKYAHVVIGRWADVAEGAVF 247


>gi|223933566|ref|ZP_03625547.1| Terminase [Streptococcus suis 89/1591]
 gi|223897762|gb|EEF64142.1| Terminase [Streptococcus suis 89/1591]
          Length = 471

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/300 (14%), Positives = 85/300 (28%), Gaps = 48/300 (16%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ+  +E +    ++ +       +       R  GKT     + LW +    G+ I+ 
Sbjct: 43  PWQVNLLENIMGIDNNGLWVHQKYGYAI----PRRNGKTEDVYILELWAL--HHGLRILH 96

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            A+  +    + +  + K L  +                G+  ++   S     +     
Sbjct: 97  TAHRISTSH-SSFEALKKLLEDM----------------GYVEDVDFVSNKAKGQERIEF 139

Query: 173 CRTYS--EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
             T S  + R  T  G        +  DEA         ++    T+ +     +M    
Sbjct: 140 KSTGSVIQYRTRTSNGGLGEGFDLLIIDEAQEYTVEQESALKYTVTDSDNPMT-VMCGTP 198

Query: 231 RRLNGW--------------------FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE-GI 269
             +                       + +     ++D         T   +     E  I
Sbjct: 199 PTMVSTGTVFTNFRTKVLAGKSEYSGWSEWSVEDIKDVNDIDSWYLTNPSLGYHLTERKI 258

Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329
            +  G D     I+ LG +P     + I  N  +     +   +L   L +G     +G 
Sbjct: 259 KAEIGDDELDHNIQRLGYWPSFNQKSAISENEWKRLKVDDV-PELSGKLFVGIKYGQDGS 317


>gi|328912284|gb|AEB63880.1| SPBc2 prophage-derived uncharacterized protein yonF [Bacillus
           amyloliquefaciens LL3]
          Length = 589

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 78/302 (25%), Gaps = 63/302 (20%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
            A RG GKT L +          PG  I+  + ++ Q +  +   +       P+     
Sbjct: 83  LASRGQGKTWLTSVYCCVQAILFPGTKIVIASGTKGQAREVIEK-IDDLRKESPN----- 136

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
              L            +  +   +  +     +             +     +  DE   
Sbjct: 137 ---LRREIEDLKTSTNDAKVEFHNGSWIKIVASNDG--------ARSKRANLLIVDEFRM 185

Query: 203 TP-DIINKSILGFFTELNPNRFW--------------IMTSNTRRLNGWFYDIF------ 241
              +II+K +  F T     ++               I  S+      W ++ F      
Sbjct: 186 VDFEIISKVLRKFLTAPRSPKYLEKEEYAHLKERNKEIYLSSCWYKVHWSFNRFITYYNA 245

Query: 242 NIPLEDWKRYQIDTRTV---EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIP 298
            +    +    +  +       +D       ++    D     +E+   +  +    +  
Sbjct: 246 MMKGSKYFVCGLPYQIAIKEGLLDKDQVRDEMAEEDFDPIGWSMEMEALWFGESEKAYFK 305

Query: 299 HNYIEEAMSREAID-------------------DLYAPLIMGCDIAGEGG---DKTVVVF 336
              IE+     +                           ++  DIAG  G   D +V   
Sbjct: 306 FEDIEKNRKLASPLFPPDYYSLIKDSNFKYESKKPGEIRLVSNDIAGMAGKDNDASVYTV 365

Query: 337 RR 338
            R
Sbjct: 366 FR 367


>gi|9630181|ref|NP_046608.1| hypothetical protein SPBc2p056 [Bacillus phage SPBc2]
 gi|16079170|ref|NP_389994.1| prophage terminase, ATP subunit; phage SPbeta [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221310018|ref|ZP_03591865.1| hypothetical protein Bsubs1_11626 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314340|ref|ZP_03596145.1| hypothetical protein BsubsN3_11547 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319262|ref|ZP_03600556.1| hypothetical protein BsubsJ_11473 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323538|ref|ZP_03604832.1| hypothetical protein BsubsS_11602 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81342066|sp|O31952|YONF_BACSU RecName: Full=SPBc2 prophage-derived uncharacterized protein yonF
 gi|2634531|emb|CAB14029.1| putative prophage terminase, ATP subunit; phage SPbeta [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|3025534|gb|AAC13029.1| unknown [Bacillus phage SPbeta]
          Length = 589

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 78/302 (25%), Gaps = 63/302 (20%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
            A RG GKT L +          PG  I+  + ++ Q +  +   +       P+     
Sbjct: 83  LASRGQGKTWLTSVYCCVQAILFPGTKIVIASGTKGQAREVIEK-IDDLRKESPN----- 136

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
              L            +  +   +  +     +             +     +  DE   
Sbjct: 137 ---LRREIEDLKTSTNDAKVEFHNGSWIKIVASNDG--------ARSKRANLLIVDEFRM 185

Query: 203 TP-DIINKSILGFFTELNPNRFW--------------IMTSNTRRLNGWFYDIF------ 241
              +II+K +  F T     ++               I  S+      W ++ F      
Sbjct: 186 VDFEIISKVLRKFLTAPRSPKYLEKEEYAHLKERNKEIYLSSCWYKVHWSFNRFITYYNA 245

Query: 242 NIPLEDWKRYQIDTRTV---EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIP 298
            +    +    +  +       +D       ++    D     +E+   +  +    +  
Sbjct: 246 MMKGSKYFVCGLPYQIAIKEGLLDKDQVRDEMAEEDFDPIGWSMEMEALWFGESEKAYFK 305

Query: 299 HNYIEEAMSREAID-------------------DLYAPLIMGCDIAGEGG---DKTVVVF 336
              IE+     +                           ++  DIAG  G   D +V   
Sbjct: 306 FEDIEKNRKLASPLFPPDYYSLIKDSNFKYEGKKPGEIRLVSNDIAGMAGKDNDASVYTV 365

Query: 337 RR 338
            R
Sbjct: 366 FR 367


>gi|114566835|ref|YP_753989.1| hypothetical protein Swol_1310 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337770|gb|ABI68618.1| hypothetical protein Swol_1310 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 522

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/248 (11%), Positives = 70/248 (28%), Gaps = 39/248 (15%)

Query: 22  AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81
            +    F  +   F         L  F  P+  Q++F   +D                  
Sbjct: 8   EKINNDFFLWAKNFIKIIDNNGNLVKFV-PNEQQVDFFNNMDKFN--------------I 52

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           I+  R +G ++L     LW+  T+P  + + ++ +       L+ ++ +  S +P ++  
Sbjct: 53  IAKSRQLGFSSLAIIYSLWIACTKPNTNCLMVSYNVEST-QALFEKMKQIYSDIPDKY-- 109

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
                               + +++    +       +           +   +   E +
Sbjct: 110 ---------KPAEKRNNRMELYLENGSRIMV------KTAGVKSLGRGMNLQYIHLSEFA 154

Query: 202 GTPDIINKSILGFFTELNPNRF--WIMTSNTRRLNGWFYDIFNIP----LEDWKRYQIDT 255
             PD   K  L    +         I+   T     ++  +F          +K +    
Sbjct: 155 FYPDDQQKDALVSLEQALAKNMDSKIVIETTSNGYNYYQKLFTNAYKSKQSKYKAFFYPW 214

Query: 256 RTVEGIDS 263
            +    + 
Sbjct: 215 TSSATANQ 222


>gi|150390597|ref|YP_001320646.1| hypothetical protein Amet_2837 [Alkaliphilus metalliredigens QYMF]
 gi|149950459|gb|ABR48987.1| conserved hypothetical protein [Alkaliphilus metalliredigens QYMF]
          Length = 519

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/252 (10%), Positives = 75/252 (29%), Gaps = 28/252 (11%)

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126
                    + +   + + R +G +TL   + ++   T+P  + + ++ S     N ++ 
Sbjct: 48  QQLKFVEEKSKYNVILKS-RQLGFSTLACGLSVYTACTKPNTTSLLLSYSIDSA-NGIFD 105

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
           ++ +    +P                      ++ +  ++    +               
Sbjct: 106 KLKQIYYDMPD-----------VLKPALHNNNKKELKFENGSKIVISTC------GNKDV 148

Query: 187 PHNTHGMAVF-NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN--GWFYDIFNI 243
                   +    E +   + I K +L     ++ +   I+ S    LN    F++    
Sbjct: 149 ARGLTLNGIVHISEMAFMKETIEKQLLAIEQAVSTDGIIIVESTANGLNFFNQFWEKAEN 208

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI--EILGQFPQQEVNNFIPHNY 301
            +  +K +         +     E  +  +           E+ G+    E++ +     
Sbjct: 209 QVNMYKPFFFSWIEDRVMFVEEIEQFVEVWKDRHGTLPSVDELEGE----ELDLYEQGAT 264

Query: 302 IEEAMSREAIDD 313
           IE+ + R     
Sbjct: 265 IEQLVWRRLKIS 276


>gi|262039284|ref|ZP_06012601.1| phage terminase, large subunit, pbsx family [Leptotrichia
           goodfellowii F0264]
 gi|261746674|gb|EEY34196.1| phage terminase, large subunit, pbsx family [Leptotrichia
           goodfellowii F0264]
          Length = 438

 Score = 57.6 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/257 (10%), Positives = 68/257 (26%), Gaps = 28/257 (10%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
           ++    +  H    ++     I+        G GK+   A  ++     R    ++ I  
Sbjct: 1   MKVELDISEHFQKFIDEETSDIYFLI--GSYGSGKSYNIATKLIVNSF-REKRKVLGIRK 57

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
               ++++++ ++   +S L    +F++ +                + I +K        
Sbjct: 58  VYRDVRDSVFTDLVDVISELELEGYFKIITGR--------------LEIVNKITGSKFIF 103

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
              +               ++ +EA+       K +       N      +++N    + 
Sbjct: 104 RGLDEVGRLKSIKG--ITDIWIEEANQCDRNDFKQLRYRLRTPNIKMHMYISTNPAEPDS 161

Query: 236 WFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN 295
                          +  D   V        +  I             I       + N 
Sbjct: 162 --------ASNWTYWFLTDYMNVTEETLYDVKEFIKSIEDKETGYIQRIYVNHSTYKENK 213

Query: 296 FIP-HNYIEEAMSREAI 311
           F+P     E  M  +  
Sbjct: 214 FLPESAVAELNMETDPY 230


>gi|16800336|ref|NP_470604.1| hypothetical protein lin1267 [Listeria innocua Clip11262]
 gi|16413741|emb|CAC96498.1| lin1267 [Listeria innocua Clip11262]
          Length = 444

 Score = 57.3 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 62/225 (27%), Gaps = 34/225 (15%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
              G  K+   A  ++  +        + + +     K++ +A +++ L  +      + 
Sbjct: 31  GAYGSSKSYATAEKIIIKLFE-EKRKCLVVRDVHESHKDSTFALLTEILEEMGVVGRGK- 88

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
                             +   +    I       ++P         +   ++ +E S  
Sbjct: 89  -------RKVVITQSPMKIKFPNGSSIIFKGL---DKPSKLKSI--ANISIIWVEECSEI 136

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF--------------------NI 243
                K +LG           I+TSN   ++ W Y  F                     I
Sbjct: 137 SYAAYKELLGRLRHPFLKTHIILTSNPVSIDNWVYLHFFEDFINKRFILSDSLLYEKRII 196

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
              +   +         +   + + +      D D+ R+   G+F
Sbjct: 197 KKNNTYYHHSVAEDNYFLTQDYIDDLEDMKNYDPDLYRVARQGRF 241


>gi|296445235|ref|ZP_06887194.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
 gi|296257190|gb|EFH04258.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
          Length = 482

 Score = 57.3 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 82/302 (27%), Gaps = 47/302 (15%)

Query: 60  EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN-------AWMMLWLISTRPGMSII- 111
             +              + +     GR  GK+          A +  W     PG  ++ 
Sbjct: 40  RPIFETLSGRAAEPQQRVEELWAIIGRRGGKSRAAAVLGAYVAGLCDWSEFRAPGERLLL 99

Query: 112 -CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
             ++ +  Q          +  + L         +  +  +   A  L+  + I      
Sbjct: 100 PIMSATVWQA--------VRIKNYLDGVFALPAFAEMVESNAAEAISLKSYVDI------ 145

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--------PDIINKSILGFFTELNPNR 222
                  E RP +F        +    DE +             I  ++           
Sbjct: 146 -------ECRPASFRTSRGATLIGAIVDEVAFLRQEGTANPDREILNALRPGLAT--TAG 196

Query: 223 FWIMTSNTRRLNGWFYDIF---NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279
             +  S+     G  Y  F   + P  D         ++    +   + I   +  D+ V
Sbjct: 197 MLVCISSPHARRGELYRAFRDHHGPAGDPAILVARASSLVMNPTLSPQVIRRAFERDAAV 256

Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSRE---AIDDLYAPLIMGCDIAGEGGDKTVVVF 336
           A  E  GQF + +V +F+    +E A+  +            +   D +G   D   +  
Sbjct: 257 AAAEYGGQF-RVDVESFVSREVVEAAVVADRFELPPCAGVKYVAFTDPSGGSSDAMTLAI 315

Query: 337 RR 338
             
Sbjct: 316 AH 317


>gi|148548588|ref|YP_001268690.1| hypothetical protein Pput_3380 [Pseudomonas putida F1]
 gi|148512646|gb|ABQ79506.1| protein of unknown function DUF264 [Pseudomonas putida F1]
          Length = 433

 Score = 57.3 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/270 (11%), Positives = 70/270 (25%), Gaps = 37/270 (13%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           AG G GKT +    +   +   P +     A +  Q+++  +  +               
Sbjct: 23  AGFGSGKTWVGCAALCKHVWEWPRIDSGYFAPTYPQIRDIFFPTIE-------------- 68

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
           +           +  ++ +   S     +         +               DE    
Sbjct: 69  EVAFDWGLKVKTKESDKEVEFYSGGQYRSTTICRSM--EKPQTIVGFKIGHALVDELDVL 126

Query: 204 P----DIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIF-------NIPLEDWKRY 251
           P    +   + I+      +   +  +  + T     + Y  F             +   
Sbjct: 127 PALKAEHAWRKIIARMRYNVPGLKNGVDVTTTPEGFKFVYQQFVKQLREKPALQGMYGLV 186

Query: 252 QIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY--IEEAMSR 308
           Q  T   E  +   +   ++  Y   + +    + GQF      +        +      
Sbjct: 187 QASTFDNELNLPPDYIPSLMESY--PAQLILAYLNGQFVNLNAGSIYHAYDRKLNSCFDT 244

Query: 309 EAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
               +   PL +G D    G    +V  +R
Sbjct: 245 ---VEPGEPLFIGMDF-NVGKMAAIVHVKR 270


>gi|83941208|ref|ZP_00953670.1| Phage terminase-like protein large subunit [Sulfitobacter sp.
           EE-36]
 gi|83847028|gb|EAP84903.1| Phage terminase-like protein large subunit [Sulfitobacter sp.
           EE-36]
          Length = 567

 Score = 57.3 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/289 (11%), Positives = 75/289 (25%), Gaps = 44/289 (15%)

Query: 75  PTIFKCAISAGRGIGKTTLNAWMM---LWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131
           P      +S GRG GK+ + A +    L  +  R     I  A         +W  V+ +
Sbjct: 106 PETANAILSIGRGNGKSAITAGLALGGLIGVWDRQPRREIIAAARTRDQGRIIWDFVAGF 165

Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
           ++ LP                    +  ++  ++ ++                       
Sbjct: 166 IASLP-------------LEIQRHFIFRRAPRLEIEYQGDGGGHILRVIAADGKSALGGA 212

Query: 192 GMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
                 DE         D +  ++L    +     F I TS +   + +   I +     
Sbjct: 213 PTMAILDERGHWALDRGDELEHALLSGLGKREGRAFLISTSASDDTHPFSRWIDDPSTGS 272

Query: 248 WKRYQIDTRTVE------------------GIDSGFHE--GIISRYGLDSDVARIEILGQ 287
           + +       +                   G +  + E     +     S +    +  +
Sbjct: 273 YIQEHRPAPGLPADDVESLLIANPGAPHGIGGNIEWLEGQAKRAIARGGSSLTSFRLYNR 332

Query: 288 FPQ---QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTV 333
             +      +  I  +        + +      +++G D+ G       
Sbjct: 333 NERVAGDSRDLLITLDEWLGC-ETDDLPPRQGGVVIGIDLGGSASMTAA 380


>gi|270265272|ref|ZP_06193533.1| phage terminase, large subunit [Serratia odorifera 4Rx13]
 gi|270040676|gb|EFA13779.1| phage terminase, large subunit [Serratia odorifera 4Rx13]
          Length = 516

 Score = 57.3 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/318 (12%), Positives = 89/318 (27%), Gaps = 59/318 (18%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
            WQ   + ++     +N +      F+ A + +G+G GK+ L+A + L+ +     P   
Sbjct: 25  PWQAFVVGSIFGWKRANGSR----RFRTAYVESGKGSGKSPLSAGIGLYCLMADKEPRAE 80

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           +   A  + Q    L+ +    ++  P                  ++ ++ S G   +  
Sbjct: 81  VYAAATKKDQAM-ILFRDAVAMVNQSP----------------ALSQRIDPSGGAGKEWN 123

Query: 170 TITCRTYSEERP-DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
               +T S  RP  +  G           DE     D     ++   T+        M +
Sbjct: 124 LAFLQTGSFFRPISSDDGQSGPRPHCALIDEVHEHKDNKAVEMMRAGTKGRRQALIFMIT 183

Query: 229 NTR-RLNGWFYDIFNIP---------------------------LEDWKRYQIDTRTVEG 260
           N+        Y+                                 ++    + +      
Sbjct: 184 NSGHDKTSVCYEYHQYGKQLAAGQKTNDAFFAFICSLDDGDDPFKDESCWPKANPSMGHT 243

Query: 261 IDSGFHEGIISRYGL---DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR-EAIDDLYA 316
               +    +           + R     ++     N +I  +         +  +    
Sbjct: 244 FQPEYLREQVEDARGMPSKESLVRRLNFCEWVD-AENPWIGGDVWMACEKTFDIAELQGR 302

Query: 317 PLIMGCDIAGEGGDKTVV 334
               G D++G+  D T +
Sbjct: 303 MCYGGLDLSGK-RDLTAL 319


>gi|168465704|ref|ZP_02699586.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195631716|gb|EDX50236.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 490

 Score = 57.3 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/333 (13%), Positives = 82/333 (24%), Gaps = 78/333 (23%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  I   R +G TT    + L   +         IA++    K     +V      LP  
Sbjct: 48  RNIILKARQLGFTTEVCIIQL-DAALFESAKCALIAHTLNDAKRLFREKVKYAYDKLPE- 105

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                    +  +   +      +            ++      T    H          
Sbjct: 106 --------EIKAANPASNDSSGELVFKKGGSLYVSTSFRG---GTLRYLH--------VS 146

Query: 199 EASGT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-------- 246
           E        PD   + + G F  ++   F  + S      G+F+D      +        
Sbjct: 147 EFGKICAKYPDKAREIVTGAFEAVSTGCFATIESTAEGRAGYFFDYCQTAEKALLQGKPL 206

Query: 247 ---DWKRYQIDTRTVEGIDSGFHE-----------GIISRYG----LDSDVARI---EIL 285
              DWK +               E            + +++G               + L
Sbjct: 207 SALDWKFFFFSWWKNPQYAIDPVESLPVRLVDYFAEMEAKHGVVVNERQKAWYYAKEKTL 266

Query: 286 GQ-------------FPQQEVNNFIPHN---YIEEAMSREAIDDLYAPLIMGCDIAGEGG 329
           G              F Q     +               +  D+ + P+    DI    G
Sbjct: 267 GDDMKREYPTIPAEAFQQSVEGAYYAKQFRWLYTNKRIGKIPDNSHLPVHTFWDIGV--G 324

Query: 330 DKTVVVFRRGNIIEHIF-DWSAKLIQETNQEGC 361
           D T + F     +  +  ++      E + EG 
Sbjct: 325 DSTAIWF-----VREVGEEFHIIDYYENSGEGL 352


>gi|319645791|ref|ZP_08000021.1| YonF protein [Bacillus sp. BT1B_CT2]
 gi|317391541|gb|EFV72338.1| YonF protein [Bacillus sp. BT1B_CT2]
          Length = 589

 Score = 57.3 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 80/302 (26%), Gaps = 63/302 (20%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
            A RG GKT L +          PG  I+  + ++ Q +  +   +       P+     
Sbjct: 83  LASRGQGKTWLTSVYCCVQAILFPGTKIVIASGTKGQAREVIEK-IDDLRKESPN----- 136

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
              L            +  +   +  +     +             +     +  DE   
Sbjct: 137 ---LKREIEDLKTSTNDARVEFHNGSWIKIVASNDG--------ARSKRANLLIVDEFRM 185

Query: 203 TP-DIINKSILGFFTELNPNRFW--------------IMTSNTRRLNGWFYDIF------ 241
              +II+K +  F T     ++               I  S+      W Y  F      
Sbjct: 186 VDFEIISKVLRKFLTAPRSPKYLEKEEYAHLKERNKEIYLSSCWYKVHWSYGRFVTYFNA 245

Query: 242 NIPLEDWKRYQIDTRTV---EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIP 298
            +    +    +  +       +D    +  +S    D     +E+   +  +    +  
Sbjct: 246 MMKGSKYFVCGLPYQIAIREGLLDKDQVKDEMSEEDFDPIGWSMEMEALWFGESEKAYFK 305

Query: 299 HNYIEEAMSRE---AIDDLYAPL----------------IMGCDIAGEGG---DKTVVVF 336
              +E+           D Y  +                ++  DIAG  G   D +V   
Sbjct: 306 FEDLEKNRKLASPLFPPDYYDLIKDSNFKFENKKPGELRLISNDIAGMAGKDNDASVYTV 365

Query: 337 RR 338
            R
Sbjct: 366 FR 367


>gi|241763591|ref|ZP_04761642.1| phage terminase large subunit [Acidovorax delafieldii 2AN]
 gi|241367184|gb|EER61538.1| phage terminase large subunit [Acidovorax delafieldii 2AN]
          Length = 521

 Score = 57.3 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 51/210 (24%), Gaps = 48/210 (22%)

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW--IMTSNTRRL- 233
           S + P  +V        A   DE     ++  ++++G+     P      +   N     
Sbjct: 125 SVKEPGDWVKYQGRPHDAKLFDEICHFTELQFRTLIGWLRTDRPEIRQRVVCAGNPPTTA 184

Query: 234 ----NGWFYDIFNIPLE---------DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280
                  F+  +  P            W         +E                 S   
Sbjct: 185 EGEWVKRFWAAWLDPQHPNRAKPGELRWYVTDEKGEDMEVPGPEMVLVGTELMKPKSRTF 244

Query: 281 ----------------------------RIEILGQFPQQEVN---NFIPHNYIEEAMSRE 309
                                          + G F     +     IP  +++ A +R 
Sbjct: 245 IPSSVDDNLFLASTGYKGTLQSLPEPLRSQMLRGDFSAGAADPAWQLIPTEWVKAAQARW 304

Query: 310 AIDDLYAP-LIMGCDIAGEGGDKTVVVFRR 338
                  P  ++G D A  G DKT V  R 
Sbjct: 305 QPRQDKGPMTVLGLDPARGGTDKTSVARRH 334


>gi|9632939|ref|NP_049967.1| putative large subunit terminase [Streptococcus phage Sfi21]
 gi|5230827|gb|AAD41029.1|AF112470_4 terminase large subunit [Streptococcus phage Sfi21]
 gi|5524034|gb|AAD44086.1|AF115103_2 orf623 gp [Streptococcus phage Sfi21]
          Length = 623

 Score = 57.3 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/347 (12%), Positives = 94/347 (27%), Gaps = 53/347 (15%)

Query: 25  VLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISA 84
                 F                 +Q   WQ   +  +    ++N         +  +S 
Sbjct: 77  ADKLLRFARIC-----PNVDTGEPTQLMPWQKFILCMLFGWRNANGGKRFS---RAIVSV 128

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
           GRG GKT L A +  +            ++N +  + +  + + +K L  +       +Q
Sbjct: 129 GRGQGKTYLMAILTAYSYFIE----SFGLSNQDYLVTSIKFKQTNKLLGYIKSMMKQIIQ 184

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                      E     +  D                ++     + H      DE     
Sbjct: 185 KEPFKSLANETE---LGLHSDQVIMKANNNILRAISAESGQYD-SFHFTTAIFDEMGEIE 240

Query: 205 --DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL----------------- 245
             + ++K + G     N     I T+       +  D   +                   
Sbjct: 241 TRNAVSKIVSGQVKVPNRQFIQISTAYPNPSVPFREDQMIMQQAMEDDDNREADTYLCLV 300

Query: 246 ----EDWKRYQIDTRTVEGIDSGFHEGIISRY-----GLDSDV-------ARIEILGQFP 289
                  + +Q +T           +   +         DSD+        +++ +  + 
Sbjct: 301 WSQDNLEEVFQPETWMKSNPLLDLEQERDNLMKGLLDKRDSDLLSGNLSDFQVKNMNCWL 360

Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
             + N+F+    IE A+  +        + +G D +    D T + F
Sbjct: 361 LADSNSFLDLKDIENAVIDDFDI-KGKRVYVGLDASMF-SDNTALGF 405


>gi|319649911|ref|ZP_08004061.1| hypothetical protein HMPREF1013_00666 [Bacillus sp. 2_A_57_CT2]
 gi|317398349|gb|EFV79037.1| hypothetical protein HMPREF1013_00666 [Bacillus sp. 2_A_57_CT2]
          Length = 536

 Score = 57.3 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 15/215 (6%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
            I  GR IG TT +   ML+   T+   S + + +   ++  +L   ++K    LPH   
Sbjct: 56  IILKGRQIGFTTWSLSYMLYSAITKSDTSYLMMTH-HNKVTQSLLRRINKMYQSLPHD-- 112

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
                   H            +  ++                            V   E 
Sbjct: 113 ---NPKYSHLFPKKIISNRDEIYFENGSRIQVAT------AGGEDSISGNTFELVHLSEM 163

Query: 201 SGTPDIINKSILGFF--TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
           +  P+   + I+              I+  +T      + ++F       +         
Sbjct: 164 AKYPNEAQEEIIATSIPALAKNPNSKIIIESTAMGFNTYQEMFMKAFRGKESVWKAHFYS 223

Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293
             +   +       +    +  R+   G     + 
Sbjct: 224 -WLAKAYSNQFKHSFDEAEEWFRLHNKGSRMTSKD 257


>gi|150397098|ref|YP_001327565.1| hypothetical protein Smed_1896 [Sinorhizobium medicae WSM419]
 gi|150028613|gb|ABR60730.1| protein of unknown function DUF264 [Sinorhizobium medicae WSM419]
          Length = 443

 Score = 56.9 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/305 (10%), Positives = 75/305 (24%), Gaps = 52/305 (17%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +                   +  G   GKT +    ++      PG   +         
Sbjct: 5   RLTEKQREANRLLAGPARNIMLRGGSRSGKTFVLCRALIQRAINAPGSRHVIFRFRFNHA 64

Query: 121 KNTLWAE-VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
           K ++W++ + K L++              + +              +           +E
Sbjct: 65  KTSVWSDTLPKVLALCFPSVRVRFDKTDFYVALP------------NGSQIWIAGLDDKE 112

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS----------- 228
           R +            ++ +E+S  P    +  +    +       I  +           
Sbjct: 113 RVEK---ILGQEYATLYFNESSQIPWASVEMAMSRLAQKCELAPAIAAATGRRYLALKAY 169

Query: 229 ---NTRRLNGWFYDIFN-----------IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYG 274
              N      W + +F               ED+   Q++           +  +++   
Sbjct: 170 FDCNPPSKLHWSFQMFRAKMKPGTKEKLAKPEDYAEMQVNPADNSENLPPEYFEVLASMS 229

Query: 275 LDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS---------REAIDDLYAPLIMGCDIA 325
               + R E  G++  +           +             R A       +++  D +
Sbjct: 230 APKRL-RFEA-GEWASEVSGALWALEDRKAPDGKLMPGIDSLRVASAPEMRRIVVSVDPS 287

Query: 326 GEGGD 330
           G  GD
Sbjct: 288 GTRGD 292


>gi|323340493|ref|ZP_08080748.1| terminase [Lactobacillus ruminis ATCC 25644]
 gi|323092037|gb|EFZ34654.1| terminase [Lactobacillus ruminis ATCC 25644]
          Length = 488

 Score = 56.9 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/299 (11%), Positives = 78/299 (26%), Gaps = 47/299 (15%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ   ++ +       +       +       R  GKT +   + LW +    G++++ 
Sbjct: 60  PWQKNLVKDIMAVDEDGLWVHQKFGYSI----PRRNGKTEIIYILELWGL--HHGLNMLH 113

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            A+  +    + + +V K+L  +      +  S+               +          
Sbjct: 114 TAHRISTSH-SSFEKVKKYLEKMGLTDGEDFNSIRAKGQ------ERIELYETGGVVQFR 166

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232
            RT +                 +  DEA         ++    T+       +M      
Sbjct: 167 TRTSNGGL--------GEGFDLLIIDEAQEYTTEQESALKYTVTDSENPMT-VMCGTPPT 217

Query: 233 LNGW--------------------FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE-GIIS 271
                                   + +      ++         +   +     E  I +
Sbjct: 218 PVSSGTVFTKYRETCLFGKAKYSGWAEWSVSEEKEIDDIDAWYNSNPSLGFHLTERKIEA 277

Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGD 330
             G D     ++ LG +P     + I     + A+  +++      L  G      G D
Sbjct: 278 ELGEDKLDHNVQRLGFWPLYNQKSAIAATEWD-ALKVDSLPAFQGKLFAGV---KYGQD 332


>gi|160934785|ref|ZP_02082171.1| hypothetical protein CLOLEP_03660 [Clostridium leptum DSM 753]
 gi|156866238|gb|EDO59610.1| hypothetical protein CLOLEP_03660 [Clostridium leptum DSM 753]
          Length = 420

 Score = 56.9 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/318 (11%), Positives = 78/318 (24%), Gaps = 37/318 (11%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW-MMLWLISTRPGMSII 111
           ++Q   +  +        N+                GKT         W        S  
Sbjct: 2   KFQEFSIRQLQALSWWCRNSPYAGCDAVICDGAVRSGKTVCMGVSFFAWCFYRFDQQSFA 61

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
               +   L+  L           P     +    ++H       L     G  ++ Y  
Sbjct: 62  LCGKTIRSLRRNLVT---------PLLPILKELGFTVHGRAGENMLEVTQRGRTNRFY-- 110

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
               +  +               +  DE +  P    +  L   +      ++    N  
Sbjct: 111 ---LFGGKDEGASAMIQGITLAGILLDEVALMPRSFVEQALARCSVEGSKFWFNC--NPE 165

Query: 232 RLNGWFYDIFNIPLEDWKRY--QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
               WFY+ +    ++   Y           +     E     Y       +  I G++ 
Sbjct: 166 HPRHWFYEEWIQKRDEKNAYYLHFRMEDNPSLSEKMIERYRGLYSGS--FYQRFIEGRWV 223

Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD-----IAGEGGDKTVVVFRRGNIIEH 344
                   P    E        +  +   I+ CD      A  G     +  R+  +   
Sbjct: 224 -AAEGLVYPF-MEEPDRFLPPPEGPFEEFIVSCDYGTVNPASFG-----LWGRKEGVWYR 276

Query: 345 IFDWSAKLIQETNQEGCP 362
           + ++      ++ ++G P
Sbjct: 277 LKEY----YYDSKRDGGP 290


>gi|302186554|ref|ZP_07263227.1| hypothetical protein Psyrps6_09413 [Pseudomonas syringae pv.
           syringae 642]
          Length = 433

 Score = 56.9 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 68/265 (25%), Gaps = 37/265 (13%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
            P  F+  + AG G GKT +    +       PG++    A +  Q+++  +  + +   
Sbjct: 14  LPHKFRAFV-AGFGSGKTWVGCSALSKHFMEWPGVNAGYFAPTYPQIRDIFYPTMEEVA- 71

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
                          +  G   ++ + +  +          T      +           
Sbjct: 72  ---------------YEWGLKTKINQANHEVHIYSGRQYRGTVICRSMEKPQTIVGFKVG 116

Query: 194 AVFNDEA----SGTPDIINKSILGFFT--ELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
               DE     S       + I+               +T+        F        + 
Sbjct: 117 HALVDELDVLTSIKAQQAWRKIIARMRYNLPGLKNGVDVTTTPEGFKFVFLQFVKQMRDK 176

Query: 248 ------WKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
                 +   Q  T   E  +   +   ++  Y     + R  + GQF      +     
Sbjct: 177 PALKEMYGLIQASTFDNELNLPDDYIPSLMESYPEQ--LIRAYLNGQFVNLTSGSIYHAY 234

Query: 301 Y--IEEAMSREAIDDLYAPLIMGCD 323
              + +            PL +G D
Sbjct: 235 DRKLNQCFDT---VQAGEPLFIGMD 256


>gi|62327323|ref|YP_224036.1| hypothetical protein BPKS7gp16 [Salmonella phage SS3e]
 gi|57472357|gb|AAW51219.1| hypothetical protein [Salmonella phage SS3e]
          Length = 423

 Score = 56.9 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 82/270 (30%), Gaps = 14/270 (5%)

Query: 81  AISAGRGIGKTTLNAW-MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
           A  AG G GK+ +     +L  +       I     +   ++  L   + + LS    R+
Sbjct: 23  AFVAGFGTGKSEVMCNSALLDSMEGGSDSLIAMYEPTYDLVRLILAPRMEEKLSDWGIRY 82

Query: 140 WFEMQSLSLH-PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
            +      ++  SG + + + +++   ++           +  DT    H  H       
Sbjct: 83  KYNKSDNIIYTSSGQFGDFVLRTLDNPARIVGYESFRAKIDELDTLNKDHAEHAWNKVIA 142

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-DWKRYQIDTRT 257
                P    + I             +    T     + +D + +  +  ++  Q  T +
Sbjct: 143 RNRQLP-RTYRPITP------KPANTVSVFTTPEGFRFVHDRWAVKKKPGYEMIQASTTS 195

Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317
              +   + + +   Y     +    I G+F      +   + Y     S          
Sbjct: 196 NPFLPEDYVQSLRDTY--PGQLIDAYIDGEFVNLTSGSVY-YAYDRRKNSSRETIQPGET 252

Query: 318 LIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
           L +G D    G   + V  +R  +   + +
Sbjct: 253 LYIGQDF-NVGHMASTVYVQREYVWHAVAE 281


>gi|237737490|ref|ZP_04567971.1| phage terminase [Fusobacterium mortiferum ATCC 9817]
 gi|229421352|gb|EEO36399.1| phage terminase [Fusobacterium mortiferum ATCC 9817]
          Length = 447

 Score = 56.9 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 75/282 (26%), Gaps = 37/282 (13%)

Query: 77  IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136
            ++  +  GRG  K+   A   +  +   P  +++ +       + + +A++   +  L 
Sbjct: 31  RYRI-VKGGRGSKKSYTTALWYITKLMELPESNLLVVRKVFDTHRGSTFAQLKTAMKRLK 89

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
             H ++  +  +  + +     +           IT  T               +    +
Sbjct: 90  VYHLWKCTTSPMEMT-YIPTGQKIIFRGLDDPLKITSITVDVG-----------YLCWAW 137

Query: 197 NDEASGT-PDIINKSILGFFTELNPNRF---WIMTSNTRRLNGWFYDIF----------- 241
            +E      +     I        PN        T N      W  D F           
Sbjct: 138 FEEMYQIENEDDFNKIDVSIRGAVPNHLFKQITCTFNPWSETHWLNDRFFKGGKEDKDNL 197

Query: 242 -------NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294
                  +   +D      + R  E +D             +     IE  G +   E  
Sbjct: 198 LTKGLAIHKNTKDILAITTNFRANEFLDEADLNVFNLMKEENPRRFEIEGNGNWGICEGT 257

Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
            F     +   ++       Y    +G D  G   D T ++ 
Sbjct: 258 VFYRWEVLNFDINTLIKTGKYLTC-IGLD-YGFTNDPTALIV 297


>gi|52079727|ref|YP_078518.1| putative phage terminase (large subunit) [Bacillus licheniformis
           ATCC 14580]
 gi|52785096|ref|YP_090925.1| XtmB [Bacillus licheniformis ATCC 14580]
 gi|319646468|ref|ZP_08000697.1| XtmB protein [Bacillus sp. BT1B_CT2]
 gi|52002938|gb|AAU22880.1| putative phage terminase (large subunit) [Bacillus licheniformis
           ATCC 14580]
 gi|52347598|gb|AAU40232.1| XtmB [Bacillus licheniformis ATCC 14580]
 gi|317391056|gb|EFV71854.1| XtmB protein [Bacillus sp. BT1B_CT2]
          Length = 432

 Score = 56.9 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/280 (10%), Positives = 68/280 (24%), Gaps = 55/280 (19%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           +  G G  K+   A  ++  +      + + +       +++ ++  +  +  L  +   
Sbjct: 24  LVGGYGSSKSYHTALKVVLKLLQ-EKRTALVVREVFETHRDSTFSLFASIIDELGVQ--- 79

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
                        A      +   +    I       + P         +   ++ +E S
Sbjct: 80  ---------KAAQAVSSPMHIRFANGSRIIFKGM---DNPAKLKSV--NNISLIWIEECS 125

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL---------------- 245
                  K ++G         + ++T+N    + W Y  F                    
Sbjct: 126 EVKYEGFKELIGRLRHPYHRLYMMLTTNPVSQSNWTYRHFFKDERNKRFILDDEVLYKKR 185

Query: 246 ----EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF----- 296
                D   +         +   + + +      D D+ RI   G+F             
Sbjct: 186 VAVVGDTYYHHSTADDNLFLPKSYLKQLDDMKAYDPDLYRIARKGRFGVNGTRVLPQFEV 245

Query: 297 ------------IPHNYIEEAMSREAIDDLYAPLIMGCDI 324
                       I +      M     +   A +    D 
Sbjct: 246 MEHEEVMRQISAISNPLKRTGMDFGFEESYNAVVRAAVDP 285


>gi|92117679|ref|YP_577408.1| phage terminase [Nitrobacter hamburgensis X14]
 gi|91800573|gb|ABE62948.1| phage Terminase [Nitrobacter hamburgensis X14]
          Length = 504

 Score = 56.9 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/309 (10%), Positives = 69/309 (22%), Gaps = 46/309 (14%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLIS---TRPGMSIICIANS 116
            +       V  +       A  + GRG  KT L+A + L  +     +     I  A  
Sbjct: 26  KLGEFQKRFVRGALDPANMVACLSIGRGNAKTALSAGISLAALMGIVDKQPKREILFAAR 85

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
                   +  +  ++  LP R   +                   +              
Sbjct: 86  NRDQSKLAFTFLVGFIESLPKREREKFTIRR---------GQRLEVEYSG-----NGGGL 131

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL----NPNRFWIMTSNTRR 232
           +               +    DE +        S+                 I TS    
Sbjct: 132 ARCIAADGKSILGGAPVLAVLDERAAWEKEKGDSLENSILSGLGKRAGKAILISTSAPDD 191

Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFH--------------------EGIISR 272
            N +   + + P   + +       +   D                        +   + 
Sbjct: 192 SNTFSRWMDDPPPGTYVQEHRPPPGLPVDDLESLLIANPGASEGIGASADWLVSQARRAL 251

Query: 273 YGLDSDVARIEILGQFPQQEVN----NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEG 328
               S ++    L +  +   +          ++   +S + +       I+G D+ G  
Sbjct: 252 ARGGSALSSFRNLNRNERVASDDRSVLLTTDEWLSAEVSLDDLPPRQGACILGVDLGGSR 311

Query: 329 GDKTVVVFR 337
                  + 
Sbjct: 312 SMSAAAFYF 320


>gi|160932962|ref|ZP_02080351.1| hypothetical protein CLOLEP_01804 [Clostridium leptum DSM 753]
 gi|156868036|gb|EDO61408.1| hypothetical protein CLOLEP_01804 [Clostridium leptum DSM 753]
          Length = 428

 Score = 56.9 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 84/284 (29%), Gaps = 35/284 (12%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q + + A   HC      +               GKTT++     W +   P ++ + +A
Sbjct: 11  QQKILNAPYSHCLEVNEGTP------------RSGKTTVSVSRFAWYLWNTPDLNHMVLA 58

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            ++ Q              ++     F +  +    S    +     + I++        
Sbjct: 59  YNQEQA-----------FKLVMDCDGFGLLHIFNGISRMKHDDFGDHLEIETMKGIKRVY 107

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP-DIINKSILGFFTELNPNRFWIMTSNTRRL 233
                + D+          +V+  E +    D I ++            + I   N    
Sbjct: 108 YKGAGKADSHKSFTGMSLGSVYFCEINLLHIDAIQEAFRRTCASRIR--WHIADLNPPAP 165

Query: 234 NGW-FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292
           +     ++FNI    W            I     E I      +  + + + LG+  +  
Sbjct: 166 SHPVISEVFNIQDTQWT--HWTIDDNPIITPERKEEIRKTCLKNPYLYKRDWLGE--RCI 221

Query: 293 VNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG--DKTVV 334
               I   +  +      I D  + + M    AG+GG  D T +
Sbjct: 222 PQGVIYSMFDPQRHILSYIPDSESKIEMY--FAGDGGLSDATSI 263


>gi|126652757|ref|ZP_01724909.1| hypothetical protein BB14905_21478 [Bacillus sp. B14905]
 gi|126590446|gb|EAZ84565.1| hypothetical protein BB14905_21478 [Bacillus sp. B14905]
          Length = 420

 Score = 56.9 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 66/227 (29%), Gaps = 38/227 (16%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           +  G G  K+   A  +L  +      + + +       +++ ++   + +  L      
Sbjct: 23  LVGGYGSSKSYHVALKILLKLLQ-EKRTALVVREVYDTHRDSTFSLFCEIIEDLGLGGKI 81

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
           +  S  +            ++   +    I       ++P+        +   ++ +E S
Sbjct: 82  KTSSSPM------------TVKFPNGSKIIF---RGMDKPEKLKSI--NNISLIWLEECS 124

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-------------------- 241
                  K +LG         F I+++N      W Y  F                    
Sbjct: 125 EIKYAGFKELLGRLRHPTLKLFIILSTNPVSKGNWVYKHFFKNELEEYFVLDDEELYKQQ 184

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
            I + +   +         +   + E +      D D+ RI   G+F
Sbjct: 185 TIIVNNTYYHHSTADDNLFLPVSYIEQLDEMELYDPDLYRIARKGRF 231


>gi|329996786|ref|ZP_08302582.1| hypothetical protein HMPREF9538_00218 [Klebsiella sp. MS 92-3]
 gi|328539287|gb|EGF65313.1| hypothetical protein HMPREF9538_00218 [Klebsiella sp. MS 92-3]
          Length = 490

 Score = 56.5 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 44/333 (13%), Positives = 82/333 (24%), Gaps = 78/333 (23%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  I   R +G TT    + L   +         IA++    K     +V      LP  
Sbjct: 48  RNIILKARQLGFTTEVCIIQL-DAALFESAKCALIAHTLNDAKRLFREKVKYAYDKLPA- 105

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                    +  +   +      +            ++      T    H          
Sbjct: 106 --------EIKAANPASNDSAGELVFKKGGSLYVSTSFRG---GTLRYLH--------VS 146

Query: 199 EASGT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-------- 246
           E        PD   + + G F  ++   F  + S      G+F+D      +        
Sbjct: 147 EFGKICAKYPDKAREIVTGAFEAVSTGCFATIESTAEGRAGYFFDYCQTAEKALLQGKPL 206

Query: 247 ---DWKRYQIDTRTVEGIDSGFHE-----------GIISRYG----LDSDVARI---EIL 285
              DWK +               E            + +++G               + L
Sbjct: 207 SALDWKFFFFSWWKNPQYAIDPVETLPARLLEYFAEMEAKHGVVVNERQKAWYYAKEKTL 266

Query: 286 GQ-------------FPQQEVNNFIPHN---YIEEAMSREAIDDLYAPLIMGCDIAGEGG 329
           G              F Q     +               +  D+ + P+    DI    G
Sbjct: 267 GDDMKREYPTIPAEAFQQSVEGAYYAKQFRWLYTNKRIGQIPDNSHLPVHTFWDIGV--G 324

Query: 330 DKTVVVFRRGNIIEHIF-DWSAKLIQETNQEGC 361
           D T + F     +  +  ++      E + EG 
Sbjct: 325 DSTAIWF-----VREVGEEFHVIDYYENSGEGL 352


>gi|251795567|ref|YP_003010298.1| terminase [Paenibacillus sp. JDR-2]
 gi|247543193|gb|ACT00212.1| Terminase [Paenibacillus sp. JDR-2]
          Length = 570

 Score = 56.5 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 79/293 (26%), Gaps = 42/293 (14%)

Query: 3   RLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFP-----WGIKGKPLEHFSQPHRWQLE 57
           R ++ D   ++   E             F+  +       WG K   LE       WQ  
Sbjct: 38  RKLAADVYDQK--SEYEYSPRHANHAIEFIENYCKHSKGKWGGKSIELE------LWQQA 89

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL--ISTRPGMSIICIAN 115
           F+ A     H              ++  R  GK+T+ + + L+L      PG  +   A 
Sbjct: 90  FIAATFGFIHKIDGTRKYREVLLVVA--RKNGKSTIASGIGLYLQIADGEPGAEVYACAT 147

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
            + Q K  +W E  + ++  P        SL        +EL+ ++     K       T
Sbjct: 148 KKDQAK-LVWLEAKRMVNKSP--------SLRKRIKPLVSELVGKTNDSSFKPLGSDSET 198

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTSNTRRLN 234
                       H         DE     D  +   I+   +  +     ++T+      
Sbjct: 199 LDGLN------VHG-----ALMDEIHAWKDRNLYDVIVDGTSSRDQPLIMMITTAGTIRE 247

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSG----FHEGIISRYGLDSDVARIE 283
             F   +    +            E             + +R          +
Sbjct: 248 AVFDLKYEEAEQKLNSLNDVLEEGEADPYEHFLPIIYELDNRSEWTDPECWQK 300


>gi|227494268|ref|ZP_03924584.1| phage terminase protein [Actinomyces coleocanis DSM 15436]
 gi|226832002|gb|EEH64385.1| phage terminase protein [Actinomyces coleocanis DSM 15436]
          Length = 468

 Score = 56.5 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/321 (11%), Positives = 72/321 (22%), Gaps = 55/321 (17%)

Query: 39  GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98
              G PL        WQ +    V                   +S  R  GKT L   + 
Sbjct: 26  EYLGTPLM------PWQQQVANVVT--QIDPNTPGAWKYPTVIVSVPRQAGKTALLRALA 77

Query: 99  LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
           +  +       I+  A +    +      +                  +L     +    
Sbjct: 78  VDRMLAYNSHEILMTAQTGKDARKRWKQII-----------------TALDVEKKHDSFK 120

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF---- 214
            +      +   +   +Y      T    H      V  DEA    +    ++       
Sbjct: 121 VREAQGSERIEYLRRGSYISPFAPTPKSVHGDSLHMVTIDEAWAFDEASGLALEAAINPT 180

Query: 215 -FTELNPNRFWIMT--------------------SNTRRLNGWFYDIFNIPLEDWKRYQI 253
             T L+     + T                    ++      +F    +        Y  
Sbjct: 181 QLTILDSQMIVVSTKGTGNSAYLNRLIQQGRQAVTDPMASVAYFEWSADPDAVRENPYSP 240

Query: 254 DT-RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN---NFIPHNYIEEAMSRE 309
                   +     E  I +    S +A  +       +E       IP    E      
Sbjct: 241 QAISFHPALGHTQDEKKILKLAESSTLASWKRGILNLDEETTGGIAVIPLEIWERLNDGH 300

Query: 310 AIDDLY-APLIMGCDIAGEGG 329
                  + + +  D++ +G 
Sbjct: 301 PAPPASPSTVEIAFDVSKDGD 321


>gi|126015320|gb|ABN70691.1| terminase [Salmonella phage SETP7]
 gi|126015322|gb|ABN70692.1| terminase [Salmonella phage SETP11]
          Length = 423

 Score = 56.5 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 81/270 (30%), Gaps = 14/270 (5%)

Query: 81  AISAGRGIGKTTLNAW-MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
           A  AG G GK+ +     +L  +       I     +   ++  L   + + LS    R+
Sbjct: 23  AFVAGFGTGKSEVMCNSALLDSMEGGSDSLIAMYEPTYDLVRLILAPRMEEKLSDWGIRY 82

Query: 140 WFEMQSLSLH-PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
            +      ++  SG + + + +++   ++           +  DT    H  H       
Sbjct: 83  KYNKSDNIIYTSSGQFGDFVLRTLDNPARIVGYESFRAKIDELDTLNKDHAEHAWNKVIA 142

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-DWKRYQIDTRT 257
                P    + I             +    T     + +D + +     ++  Q  T +
Sbjct: 143 RNRQLP-RTYRPITP------KPANTVSVFTTPEGFRFVHDRWVVKKNPGYEMIQAPTTS 195

Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317
              +   + + +   Y     +    I G+F      +   + Y     S          
Sbjct: 196 NPFLPEDYVQSLRDTY--PGQLIDAYIDGEFVNLTSGSVY-YAYDRRKNSSRETIQPGET 252

Query: 318 LIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347
           L +G D    G   + V  +R  +   + +
Sbjct: 253 LYIGQDF-NVGHMASTVYVQREYVWHAVAE 281


>gi|294340239|emb|CAZ88611.1| putative Phage terminase large subunit [Thiomonas sp. 3As]
          Length = 581

 Score = 56.5 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/332 (10%), Positives = 84/332 (25%), Gaps = 68/332 (20%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP--GMSI 110
            WQ+  +  V    ++         +   I   RG GK+ L++ + L++++     G  +
Sbjct: 104 PWQVFILTTVFGWVNAAGRRRFRRAY---IEVPRGNGKSALSSALALYMLAVDGEMGAEV 160

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
             +A +  Q +                   F +       S  +       +G  + H  
Sbjct: 161 YSLATTRDQARIV-----------------FGVAQTMARRSPGFCRRFGVGIGAHNLHVL 203

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNRFWIMTSN 229
            +   +     +        +      DE  +     +   +     + + +  W++T+ 
Sbjct: 204 SSASRFEPLSAE-GSTLDGLNIHFGCVDELHAHKTRTVYDVVETATGKRDNSLLWVITTA 262

Query: 230 TRRLNGWFYDIFN----------------------IPLEDWKRYQIDTRTVEGIDSGFHE 267
                G  Y++                           +DW       +           
Sbjct: 263 GSDRAGICYEVRTGVTRILDGVMEDERQFGIIHGLDEGDDWTHENALIKANPNWGVSIDA 322

Query: 268 GIISRYGLD-------SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD--LYAPL 318
             +             +   + + L  +     + ++     +         D     P 
Sbjct: 323 DAVLSLQAKALQLPSAAAAFQTKHLNVWV-SADSPWMDMRAWDACADTGLDLDAFEGQPC 381

Query: 319 IMGCDIA------------GEGGDKTVVVFRR 338
            +G D+A              G D   V  R 
Sbjct: 382 WIGLDLASKVDIAALVLVFRHGADGFAVFSRH 413


>gi|330977766|gb|EGH77669.1| hypothetical protein PSYAP_13460 [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 384

 Score = 56.5 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 68/265 (25%), Gaps = 37/265 (13%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
            P  F+  + AG G GKT +    +       PG++    A +  Q+++  +  + +   
Sbjct: 14  LPHKFRAFV-AGFGSGKTWVGCSALSKHFMEWPGVNAGYFAPTYPQIRDIFYPTMEEVA- 71

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
                          +  G   ++ + +  +          T      +           
Sbjct: 72  ---------------YEWGLKTKINQANHEVHIYSGRQYRGTVICRSMEKPQTIVGFKVG 116

Query: 194 AVFNDEA----SGTPDIINKSILGFFT--ELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
               DE     S       + I+               +T+        F        + 
Sbjct: 117 HALVDELDVLTSIKAQQAWRKIIARMRYNLPGLKNGVDVTTTPEGFKFVFLQFVKQLRDK 176

Query: 248 ------WKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
                 +   Q  T   E  +   +   ++  Y     + R  + GQF      +     
Sbjct: 177 PALKEMYGLIQASTFDNELNLPDDYIPSLMESYPEQ--LIRAYLNGQFVNLTSGSIYHAY 234

Query: 301 Y--IEEAMSREAIDDLYAPLIMGCD 323
              + +            PL +G D
Sbjct: 235 DRKLNQCFDT---VQAGEPLFIGMD 256


>gi|301382086|ref|ZP_07230504.1| hypothetical protein PsyrptM_05618 [Pseudomonas syringae pv. tomato
           Max13]
 gi|302061639|ref|ZP_07253180.1| hypothetical protein PsyrptK_16760 [Pseudomonas syringae pv. tomato
           K40]
 gi|302131811|ref|ZP_07257801.1| hypothetical protein PsyrptN_10492 [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 433

 Score = 56.5 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 68/265 (25%), Gaps = 37/265 (13%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
            P  F+  + AG G GKT +    +       PG++    A +  Q+++  +  + +   
Sbjct: 14  LPHKFRAFV-AGFGSGKTWVGCSALSKHFMEWPGVNAGYFAPTYPQIRDIFYPTMEEVA- 71

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
                          +  G   ++ + +  +          T      +           
Sbjct: 72  ---------------YEWGLKTKINQANHEVHIYSGRQYRGTVICRSMEKPQTIVGFKVG 116

Query: 194 AVFNDEA----SGTPDIINKSILGFFT--ELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
               DE     S       + I+               +T+        F        + 
Sbjct: 117 HALVDELDVLTSIKAQQAWRKIIARMRYNLPGLKNGVDVTTTPEGFKFVFLQFVKQLRDK 176

Query: 248 ------WKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
                 +   Q  T   E  +   +   ++  Y     + R  + GQF      +     
Sbjct: 177 PALKEMYGLIQASTFDNELNLPDDYIPSLMESYPEQ--LIRAYLNGQFVNLTSGSIYHAY 234

Query: 301 Y--IEEAMSREAIDDLYAPLIMGCD 323
              + +            PL +G D
Sbjct: 235 DRKLNQCFDT---VQAGEPLFIGMD 256


>gi|268608029|ref|ZP_06141759.1| phage terminase large subunit [Ruminococcus flavefaciens FD-1]
          Length = 415

 Score = 56.5 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 59/240 (24%), Gaps = 24/240 (10%)

Query: 87  GIGKTTLNA-WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
             GKT   +   +LW  ++  G +      + T L+  +   +   L         ++  
Sbjct: 35  RSGKTLSMSLGFVLWASASFDGGAFAICGKTVTSLRRNVITPLLPMLRDYGFTCIEKVSR 94

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
             +  +                        +      +           VF DEA+  P 
Sbjct: 95  SYIDLTFLGHTNR--------------FYLFGGRDEGSAALIQGMTLSGVFLDEAALMPR 140

Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR--YQIDTRTVEGIDS 263
              +  L   +      ++    N      WFY  +    E+               +  
Sbjct: 141 SFVEQALARCSVSGSKMWFNC--NPDNPAHWFYTEWIKKAEEKHALYIHFTMDDNPSLSD 198

Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
              +     Y          +LG++         P     E     + D      ++ CD
Sbjct: 199 ALKQRYKRLYSG--AFYDRFVLGKW-TASQGVVYP--MFSEKKHVYSGDVECERFVISCD 253


>gi|9632897|ref|NP_049926.1| putative terminase large subunit [Streptococcus phage Sfi19]
 gi|5524003|gb|AAD44056.1|AF115102_4 orf623 gp [Streptococcus phage Sfi19]
          Length = 623

 Score = 56.5 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 42/331 (12%), Positives = 97/331 (29%), Gaps = 51/331 (15%)

Query: 44  PLEHFSQPHR---WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           P     +P +   WQ   +  +    ++N         +  +S GRG GKT L A +  +
Sbjct: 88  PNVDTGEPTKLMAWQKFILCMLFGWRNANGGKRFS---RAIVSVGRGQGKTYLMAILTAY 144

Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
                     + ++N +  + +  + + +K L  +       +Q+          E    
Sbjct: 145 SYFIE----SLGLSNQDYLVTSINFKQTNKLLGYIKSMMKQIIQNEPFKSLANETE---L 197

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTEL 218
            +  D                ++     + H      DE       D ++K + G     
Sbjct: 198 GLHSDQVIMKANNNVLRAISAESGQYD-SFHFTTAIFDEIGEIETRDAVSKIVSGQVKVP 256

Query: 219 NPNRFWIMTSNTR----------------------RLNGWFYDIFNIPLEDWKRYQIDT- 255
           N     I T+                           + +   +++    +         
Sbjct: 257 NRQFIQISTAYPNPSVPFREDQRIMQQAMEDDDSRDADTYLCLVWSQDNLEEVFKPETWA 316

Query: 256 RTVEGIDSGFHEGIISRYGLDS----------DVARIEILGQFPQQEVNNFIPHNYIEEA 305
           ++   +D       + +  +D              +++ +  +   + N+F+    IE A
Sbjct: 317 KSNPLLDLEQERENLMKGLMDKRDSDLLSGNIADFQVKNMNCWLLADSNSFLDLKDIENA 376

Query: 306 MSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
           +  E        + +G D +    D T + F
Sbjct: 377 VIPEFDR-RGKRVYVGLDASMF-SDNTAIGF 405


>gi|66046030|ref|YP_235871.1| hypothetical protein Psyr_2794 [Pseudomonas syringae pv. syringae
           B728a]
 gi|63256737|gb|AAY37833.1| Protein of unknown function DUF264 [Pseudomonas syringae pv.
           syringae B728a]
          Length = 433

 Score = 56.5 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 68/265 (25%), Gaps = 37/265 (13%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
            P  F+  + AG G GKT +    +       PG++    A +  Q+++  +  + +   
Sbjct: 14  LPHKFRAFV-AGFGSGKTWVGCSALSKHFMEWPGVNAGYFAPTYPQIRDIFYPTMEEVA- 71

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
                          +  G   ++ + +  +          T      +           
Sbjct: 72  ---------------YEWGLKTKINQANHEVHIYSGRQYRGTVICRSMEKPQTIVGFKVG 116

Query: 194 AVFNDEA----SGTPDIINKSILGFFT--ELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
               DE     S       + I+               +T+        F        + 
Sbjct: 117 HALVDELDVLTSIKAQQAWRKIIARMRYNLPGLKNGVDVTTTPEGFKFVFLQFVKQLRDK 176

Query: 248 ------WKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
                 +   Q  T   E  +   +   ++  Y     + R  + GQF      +     
Sbjct: 177 PALKEMYGLIQASTFDNELNLPDDYIPSLMESYPEQ--LIRAYLNGQFVNLTSGSIYHAY 234

Query: 301 Y--IEEAMSREAIDDLYAPLIMGCD 323
              + +            PL +G D
Sbjct: 235 DRKLNQCFDT---VQAGEPLFIGMD 256


>gi|321312115|ref|YP_004204402.1| putative phage-related terminase large subunit [Bacillus subtilis
           BSn5]
 gi|320018389|gb|ADV93375.1| putative phage-related terminase large subunit; skin element
           [Bacillus subtilis BSn5]
          Length = 431

 Score = 56.5 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 63/227 (27%), Gaps = 38/227 (16%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           +  G G  K+   A  ++  +      + + I       +++ ++   + +S L   H  
Sbjct: 23  LVGGYGSSKSYHVALKIILKLLK-EKRTALVIREVYDTHRDSTFSLFDELVSDLKLDHIV 81

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
              S  +             +   +    I       ++P         +   ++ +E S
Sbjct: 82  RCVSSPM------------QIRFSNGSRIIFKGM---DKPAKLKSI--NNISLIWIEECS 124

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-------------------- 241
                  K +LG           I+++N    + W +  F                    
Sbjct: 125 EVKYEGFKELLGRLRHPTLPLHMILSTNPVGEDNWTFKHFFKDDREKRFVLDDKELYEKR 184

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
            I   D   +         +   + + +      D D+ RI   G F
Sbjct: 185 IIVSNDTYYHHSTADDNLFLPESYVQQLEELKEYDPDLYRIARKGHF 231


>gi|14251081|ref|NP_116438.1| T89 [Tupaiid herpesvirus 1]
 gi|12656019|gb|AAK00707.1| viral terminase [Tupaiid herpesvirus 1]
 gi|14210775|gb|AAK57138.1| T89 [Tupaiid herpesvirus 1]
          Length = 673

 Score = 56.5 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 70/237 (29%), Gaps = 19/237 (8%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GKT     ++ +L+    G+SI  +A+ +   +  L     +   +    H  E +
Sbjct: 215 PRRHGKTWFTVPIICFLLKNVQGISIGYVAHQKHVSQFVLKEVEFRCRRLFGRTHTVENK 274

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
              +                    + I   T               +   +  DEA    
Sbjct: 275 DNVISI-----------------DHPIAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK 317

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTVEGIDS 263
                +ILGF  +      +I ++NT      F   + N P +              + S
Sbjct: 318 KDAFNTILGFLAQNTTKIIFISSTNTTTDATCFLTKLNNSPFDMLNVISYVCEEHIQVFS 377

Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIM 320
              +              I I  +  +Q  N F+  ++++E M          PLI 
Sbjct: 378 EKPDATACPCYRLHKPTFITINSE-VRQTANMFLAGSFMDEIMGGTNKIVEDTPLIT 433


>gi|260664072|ref|ZP_05864925.1| terminase-large subunit [Lactobacillus jensenii SJ-7A-US]
 gi|260561958|gb|EEX27927.1| terminase-large subunit [Lactobacillus jensenii SJ-7A-US]
          Length = 571

 Score = 56.5 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 48/307 (15%), Positives = 97/307 (31%), Gaps = 61/307 (19%)

Query: 69  NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP----GMSIICIANSETQLKNTL 124
             ++S+    K  IS  R  GKT L A + L+++  +     G  I C AN   Q K   
Sbjct: 89  RKSDSHRKFKKMFISMARKNGKTILVAGIALYILLYQKYPVRGKQIYCAANKRDQAK-VA 147

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP--D 182
           +  ++ +L  L     F  +   +                  +      +T S  +P  +
Sbjct: 148 FNYINNFLVPLRSDSPFVKRKTQMK-----------------RDEITDAKTGSFIKPLSN 190

Query: 183 TFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN-TRRLNGWFYD-- 239
              G    +      DE + + DI     +   + +  +   ++ S  +  +NGWF++  
Sbjct: 191 DKNGIQGLNTTLAIFDEQADSNDITVYDAVEKSSRMQKDPLMLLISTVSPNINGWFHEMI 250

Query: 240 --------------------IFNIPLEDWKRYQIDT-RTVEGIDSGFHEGII-------- 270
                                +    ED      +  ++   +        +        
Sbjct: 251 YQYVEQMVKGDVVDDETMVLWYEQESEDEIADTANWIKSNPILYDKDIRETLLPTLIQDW 310

Query: 271 --SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD-LYAPLIMGCDIAGE 327
             ++       A+I     + Q   N++I        +  +   D     + +G D+A  
Sbjct: 311 KTAQAMGRETKAKIYNFNMWQQANENSYIKVQDW-ANIKVDKTPDLYGREVYIGMDLART 369

Query: 328 GGDKTVV 334
           G D + V
Sbjct: 370 G-DLSAV 375


>gi|216905967|ref|YP_002333563.1| gp2 [Bacillus phage TP21-L]
 gi|215809694|gb|ACJ70528.1| gp2 [Bacillus phage TP21-L]
          Length = 439

 Score = 56.5 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/279 (10%), Positives = 75/279 (26%), Gaps = 38/279 (13%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  +  GR  GK+    + +L +      +S + +   +  +  +++ ++ + + +L  +
Sbjct: 31  RYVLKGGRASGKSYFIPFRIL-MDIMEYPISWLVLRKVQNTIVRSVFEQLKEAMVILGIK 89

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG--MAVF 196
           H F      L    +     +                   E P+      +     M ++
Sbjct: 90  HLFRCIPSRLIME-YKPRGNKIYF-------------LGCEEPERIKSIKDAEFPIMGMW 135

Query: 197 NDEASGT-PDIINKSILGFFTELNPNRF-------------WIMTSNTRRLNGWFYDIFN 242
            +E      +     I                         +  + N  +    + +   
Sbjct: 136 VEEIGEFRKEEEISIIEKSVLRGEFEIKPEHRPELPNYEYTFFYSYNPPKRRAHWLNKKY 195

Query: 243 IPL---EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299
                 ++           + +   F+E       ++    R E LG+         +P 
Sbjct: 196 NSSFIPDNTHVNHSTYLDNDYLTKAFYEEAEIEKKMNPLKYRWEYLGEAIGSG---VVPF 252

Query: 300 NYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
           + I  A   +     +  +  G D  G   D        
Sbjct: 253 DNIVSAEITDEQISQFDNIRQGIDF-GYATDPLAFGRMH 290


>gi|282554628|ref|YP_003347645.1| putative DNA maturase B [Klebsiella phage KP34]
 gi|262410461|gb|ACY66725.1| putative DNA maturase B [Klebsiella phage KP34]
          Length = 618

 Score = 56.1 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/197 (12%), Positives = 55/197 (27%), Gaps = 31/197 (15%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEA 61
           PR I  +++ +  L      A  +  F+ F                F        +    
Sbjct: 24  PRSIPKEEREDIALM----MAAALSDFREFAYIGM----------RFLGFTL--TDMQAD 67

Query: 62  VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121
           +  +                ++A RG  K+TL A   +W +       I+ ++ +E Q  
Sbjct: 68  IAEYMQKGPRKRM-------VAAQRGEAKSTLAALYAVWRLIQDQSCRILIVSGAEKQAS 120

Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
           +     + + L   P   + +        + +    +   +    K  ++ C   +    
Sbjct: 121 DVA-NLIIRMLETWPLLCYLKADPTRGDRTSFEGYDVHCDLKPLDKSASVACVGITA--- 176

Query: 182 DTFVGPHNTHGMAVFND 198
                        +  D
Sbjct: 177 ----SLQGKRADLLIPD 189


>gi|168236907|ref|ZP_02661965.1| putative phage terminase, large subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194737485|ref|YP_002117149.1| putative phage terminase, large subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194712987|gb|ACF92208.1| putative phage terminase, large subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197289995|gb|EDY29354.1| putative phage terminase, large subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 558

 Score = 56.1 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 41/344 (11%), Positives = 91/344 (26%), Gaps = 58/344 (16%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSI 110
            WQ   + +V    +S+       ++   + +G+G GK+ L A + L+ +     P   +
Sbjct: 67  PWQCFIVGSVFGWKNSDGYRRFRMVY---VESGKGSGKSPLAAGIALYCLVADKEPRAEV 123

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
              A  + Q    L+ +    +   P                  A+ + +S G   +   
Sbjct: 124 YAAATKKDQAM-ILFRDAVAMVDQSP----------------ALAQRINKSGGAGKEWNL 166

Query: 171 ITCRTYSEERP-DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
              +T S  RP  +  G           DE     +     ++   T+        M +N
Sbjct: 167 AFLQTGSFFRPISSDDGQSGPRPHCALIDEIHEHKNNQVVEMMRAGTKGRRQALIFMITN 226

Query: 230 TR-RLNGWFYDIFNIPL---------------------------EDWKRYQIDTRTVEGI 261
           +        YD                                 ++    + +       
Sbjct: 227 SGHDKTSVCYDYHEYGRKVAEGSVDDDSFFSFICSLDEGEDPFKDETCWKKANPSLGHTF 286

Query: 262 DSGFHEG---IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR-EAIDDLYAP 317
              +                + R     Q+     N ++  +         +  +     
Sbjct: 287 TERYLREQVTQARGMPSKESIVRRLNFCQWVD-ADNPWMSSDVWMGCEEDFDLQELRGEE 345

Query: 318 LIMGCDIAGEGGDKTVVVFRRGNIIEHIFD-WSAKLIQETNQEG 360
              G D++G   D T +        + + + W+ K       + 
Sbjct: 346 CYGGLDLSGS-RDLTALALFFPKKRKLVVEFWTPKDTLTDRAKT 388


>gi|313114059|ref|ZP_07799612.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310623629|gb|EFQ07031.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 443

 Score = 56.1 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 44/315 (13%), Positives = 78/315 (24%), Gaps = 63/315 (20%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN-----AWMMLWLISTRP 106
             WQ + ++       S    +            R  GK+ L      A M+L+      
Sbjct: 12  DPWQSDILDDWMSRTVSGKWAAPTAGGSV----PRQNGKSLLVQGRSEAGMLLF------ 61

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
             ++I  A+ +       + E+         R +FE   L  H +     L  + + + S
Sbjct: 62  NETVIYTAHLQKTATE-TFEEM---------RAFFESPKLRRHVAEIKTALGREQIILKS 111

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
                              G    HG  +  DEA    +    S L   +     +  I 
Sbjct: 112 GARIKFLARTR-------NGGRGQHGDLLIFDEAQELDETAQGSFLPAISASLNPQT-IY 163

Query: 227 TSNTRRLN--GWFYDIFNIPLEDWKRYQIDTRT--VEGIDSGFHEGII------------ 270
                  +  G  +        D +  +       V  I                     
Sbjct: 164 VGTPPGPDAVGTVFRALRKRALDGEAKKAAWFEFSVPEIGDVKDPARWAATNPALGRRIQ 223

Query: 271 ------SRYGLDSDVARIEILGQF---PQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMG 321
                     LD D    E LG +     + ++  I     E   S +   +      + 
Sbjct: 224 LSTIEGEAEQLDPDTFARERLGWWSPEITEHLDYAIDRTAWEACASEDEKPEGKTAYGI- 282

Query: 322 CDIAGEGGDKTVVVF 336
                   D + V  
Sbjct: 283 ----KFSADGSAVCL 293


>gi|50954217|ref|YP_061505.1| phage-related terminase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50950699|gb|AAT88400.1| phage-related terminase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 361

 Score = 56.1 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/311 (10%), Positives = 75/311 (24%), Gaps = 50/311 (16%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM-MLWLIST 104
           +   +   WQ    + +         +   TI    +S  R + KT + + + ++ L + 
Sbjct: 41  DFGDEFDVWQQGASKLILA--KRANGDYAATIGGITLSIPRQVAKTYMVSRINIVALCTI 98

Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
            P ++++  A+       T              R +   +S++       A   EQ +  
Sbjct: 99  FPNLTVLWTAHRTRTSTKTF----------ASLRGFVGRKSVAPFVRNVRAVNGEQEIEF 148

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN--R 222
            +    +                          DEA    +   + ++    +       
Sbjct: 149 TNGSVIMFGAREQGFGRG------FDEVDIEVFDEAQILTEKALEDMVAATNQSRFPAGA 202

Query: 223 FWIMTSNTRRLNGWFYDIFNIPL-------EDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275
                    R                    +D    +    T    D      I +    
Sbjct: 203 LLFFMGTPPRPVDPGEAFKQRRREALLGGSDDAVYIECSADTDADPDDREQWEIANPSYP 262

Query: 276 D----------------SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DDLYAP 317
                             +  + E LG +   + +      +I  +   +     D    
Sbjct: 263 HRTPLKSMLRLRKNLPSDESWKREALGIW---DTDQVGSR-FISASRWADLEGIPDPDES 318

Query: 318 LIMGCDIAGEG 328
              G   + +G
Sbjct: 319 PAYGVAFSQDG 329


>gi|326336497|ref|ZP_08202667.1| terminase large subunit protein [Capnocytophaga sp. oral taxon 338
           str. F0234]
 gi|325691370|gb|EGD33339.1| terminase large subunit protein [Capnocytophaga sp. oral taxon 338
           str. F0234]
          Length = 390

 Score = 56.1 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 70/255 (27%), Gaps = 31/255 (12%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            +        KT      ++    T P   +  +  +   LK +++ +  + L  L    
Sbjct: 23  VSAQGSSRSSKTFNILIWLIIYCLTYPKTRLSIVRATLPALKGSVFVDFKEILYKLNVFD 82

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
              +    +  +              +  +     T      D+           ++ +E
Sbjct: 83  EDSINKSEMIYTFP------------NGSWVEFFST------DSEQKLRGRKRDVLYVNE 124

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
           A+    I  + +    T+     F I+  N    +   +            +    +   
Sbjct: 125 ANELKFIEFQQLKMRTTQ-----FTIVDYNPSF-SNDHWLCELNKDPRTYHFISTYKDNP 178

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319
            ++    + I S    +  + ++  LGQ         I     E+    E I        
Sbjct: 179 FLEQTVIDEIESLQHKNRSLWQVYGLGQ------QAMIEGLIFEKVTIVEEIPIWAKKRY 232

Query: 320 MGCDIAGEGGDKTVV 334
           +G D  G   D T +
Sbjct: 233 LGLDF-GFTHDPTAI 246


>gi|291457608|ref|ZP_06596998.1| putative phage terminase, large subunit [Bifidobacterium breve DSM
           20213]
 gi|291380661|gb|EFE88179.1| putative phage terminase, large subunit [Bifidobacterium breve DSM
           20213]
          Length = 537

 Score = 56.1 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 36/323 (11%), Positives = 74/323 (22%), Gaps = 62/323 (19%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR------- 105
            WQ   +                   K  +   R  GKTTL   +  W +          
Sbjct: 56  PWQQWLLVHALELLEDGSYRF----RKVIVLVARQNGKTTLMGVLAAWWLFVDSNKHPDR 111

Query: 106 -PGMSIICI-ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
            P +  + + A          + +V +W +  P                     + Q   
Sbjct: 112 VPPVKFLVVGAAQTLDNAKGPYNQVKEWCNPQPS------TDEEADLVIPDLAAMTQKFV 165

Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNR 222
             +    I  R+ +                 V  DE      D    ++      +  ++
Sbjct: 166 NTNGEEAIITRSKARYIVRADKNIRAKSAARVVFDELREQHNDDGWNAVSQTTKAVWSSQ 225

Query: 223 FWIMT-------------------------------SNT---------RRLNGWFYDIFN 242
            W ++                                N              G+F     
Sbjct: 226 LWGISNAGDYRSVALRKQVDKGRKLVDEWTRLSADGGNPADVFTSGEQDGSFGYFEWSAP 285

Query: 243 --IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
              P++D    +    ++               G+     R E+L Q+   ++  FI   
Sbjct: 286 DKCPVDDADAIRHANPSLGYGPMTVMSVRSDIDGMTEAAFRTEVLCQWVTADIIPFIGPK 345

Query: 301 YIEEAMSREAIDDLYAPLIMGCD 323
                +   +       +++  D
Sbjct: 346 MWASGIDSRSTIPDGNRVVLSVD 368


>gi|288934668|ref|YP_003438727.1| phage terminase large subunit [Klebsiella variicola At-22]
 gi|288889377|gb|ADC57695.1| phage terminase large subunit [Klebsiella variicola At-22]
          Length = 490

 Score = 56.1 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 44/333 (13%), Positives = 82/333 (24%), Gaps = 78/333 (23%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  I   R +G TT    + L   +         IA++    K     +V      LP  
Sbjct: 48  RNIILKARQLGFTTEVCIIQL-DAALFESAKCALIAHTLNDAKRLFREKVKYAYDKLPA- 105

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                    +  +   +      +            ++      T    H          
Sbjct: 106 --------EIKAANPASNDSAGELVFKKGGSLYVSTSFRG---GTLRYLH--------VS 146

Query: 199 EASGT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-------- 246
           E        PD   + + G F  ++   F  + S      G+F+D      +        
Sbjct: 147 EFGKICAKYPDKAREIVTGAFEAVSTGCFATIESTAEGRAGYFFDYCQTAEKALLQGKPL 206

Query: 247 ---DWKRYQIDTRTVEGIDSGFHE-----------GIISRYG----LDSDVARI---EIL 285
              DWK +               E            + +++G               + L
Sbjct: 207 SALDWKFFFFSWWKNPQYAINPVEPLPARLLEYFAEMEAKHGIVVNERQKAWYYAKEKTL 266

Query: 286 GQ-------------FPQQEVNNFIPHN---YIEEAMSREAIDDLYAPLIMGCDIAGEGG 329
           G              F Q     +               +  D+ + P+    DI    G
Sbjct: 267 GDDMKREYPTIPAEAFQQSVEGAYYAKQFRWLYTNKRIGQIPDNSHLPVHTFWDIGV--G 324

Query: 330 DKTVVVFRRGNIIEHIF-DWSAKLIQETNQEGC 361
           D T + F     +  +  ++      E + EG 
Sbjct: 325 DSTAIWF-----VREVGEEFHVIDYYENSGEGL 352


>gi|254500214|ref|ZP_05112365.1| hypothetical protein SADFL11_250 [Labrenzia alexandrii DFL-11]
 gi|254505306|ref|ZP_05117454.1| hypothetical protein SADFL11_PLAS4 [Labrenzia alexandrii DFL-11]
 gi|222436150|gb|EEE42832.1| hypothetical protein SADFL11_PLAS4 [Labrenzia alexandrii DFL-11]
 gi|222436285|gb|EEE42964.1| hypothetical protein SADFL11_250 [Labrenzia alexandrii DFL-11]
          Length = 627

 Score = 56.1 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 18/128 (14%)

Query: 24  CVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKC--- 80
              SF  F+ R   W   G P     +P R Q E    +     S          +    
Sbjct: 28  LYESFTAFLDRV--WEHLGLP-----EPTRAQYEIAHRLQYGADSLEWEKLSEEERQVRH 80

Query: 81  ------AISAGRGIGKTTLNAWMMLWLISTRP-GMSIICIANSETQLKNTLWAEVSKWLS 133
                  I A RG+GK+ + A  ++WL+   P    ++ ++ S  + K  +  +    + 
Sbjct: 81  KGLREDIIRAFRGLGKSYITAAFVIWLLMRNPKDEKVMVVSASSGKAKQFV-DQTKGIIQ 139

Query: 134 MLPHRHWF 141
            +P   W 
Sbjct: 140 SMPEIRWL 147


>gi|148912857|ref|YP_001293436.1| hypothetical protein ORF029 [Pseudomonas phage 73]
          Length = 551

 Score = 56.1 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/186 (12%), Positives = 55/186 (29%), Gaps = 17/186 (9%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P  +Q E   ++  +       +        ++   G GK+ + A  +  +    P   I
Sbjct: 7   PRWYQDEAEYSIFDYFQRGGVGNP------VVAMPTGTGKSVVIANFIRRIFGYWPNQRI 60

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + + + +  ++      +S W +     +   + S  +     +  +   +  I      
Sbjct: 61  MMLTHVKELIEQNAEKLMSIWPTAPMGIYSAGLNSRDMIMPIVFGGVQSVAPAIKRGLEE 120

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI---INKSILGFFTELNPNRFWIMT 227
              R             H      +  DE     D      + I+    ++NP+   I  
Sbjct: 121 DDGRPA--------HLRHFGWRDLLLIDECHLLSDKEDSHYQYIIAELRKINPHLKVIGF 172

Query: 228 SNTRRL 233
           + T   
Sbjct: 173 TATPYR 178


>gi|254820336|ref|ZP_05225337.1| hypothetical protein MintA_10426 [Mycobacterium intracellulare ATCC
           13950]
          Length = 478

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/311 (13%), Positives = 77/311 (24%), Gaps = 54/311 (17%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             WQ   +  +      +    + +     ++  R  GK  +   + L+ +       I+
Sbjct: 44  DDWQGRIVRGI---LRESGGTWSCSQAGVVVA--RQSGKGQILLALELFGLYEL-DEQIL 97

Query: 112 CIAN---SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
             A+   + +     LW  +                 +  H     AE +E   G     
Sbjct: 98  HTAHAVKTSSDAFRRLWDVIQ--------SDADLAGRVRRHSQMIGAEYVELDTGA---- 145

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF-TELNPNRFWIMT 227
                 T                   +  DEA   P     ++     +  +    +  T
Sbjct: 146 --RIAFTTRSASAG-----RGLSIDRLIVDEAEDLPAAEVGALQPTVYSRPHAQSLFFGT 198

Query: 228 S---------------------NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFH 266
           S                     N R     +   +   ++D   +      V        
Sbjct: 199 SPGPMHDSEAFATMRKSAHDGLNPRLGWAEWCAEWGDDIDDHDVWIRTNPAVATGRVPLQ 258

Query: 267 EGIISRYGLDSDVARIEILGQF-PQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
                R  L  D  R E L  + P    +        E     +++      + +G D A
Sbjct: 259 AIADDRAVLPPDTFRAERLSMWVPHASGDQVFDPAVWEALTDPDSVPIAD--VAIGVD-A 315

Query: 326 GEGGDKTVVVF 336
           G   DK  V  
Sbjct: 316 GPSRDKATVCV 326


>gi|170739523|ref|YP_001768178.1| hypothetical protein M446_1219 [Methylobacterium sp. 4-46]
 gi|168193797|gb|ACA15744.1| conserved hypothetical protein [Methylobacterium sp. 4-46]
          Length = 491

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/294 (13%), Positives = 70/294 (23%), Gaps = 30/294 (10%)

Query: 60  EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
            A+        N     + +     GR  GKT   A +  +         ++  A  E  
Sbjct: 46  RAIYAALTGRENEPGAPVEEVWAIIGRRGGKTRAMAVLAAYFAVLCDWDDVL--APGERG 103

Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
               + A   +    L            +     + E     +   +            E
Sbjct: 104 SLPLIAASTYQAGKAL----------SYIRGIFDHVEGFAGHVTGQTADTLSLDTGVDIE 153

Query: 180 -RPDTFVGPHNTHGMAVFNDEASGT--------PDIINKSILGFFTELNPNRFWIMTSNT 230
            RP +F        +A   DE +             I  ++              + S+ 
Sbjct: 154 VRPASFRTSRGGTLVAALCDEVAFWRVEGSANPDREILAALRPGLATTGGPL--CIISSP 211

Query: 231 RRLNGWFYDIFNI---PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
               G  Y  F     P  D         +     +     +   Y  D+  AR E   +
Sbjct: 212 YAKRGELYGAFRRDFGPEGDPAVLVAKAPSRTMNPTLAESVVARAYARDAAAARAEYGAE 271

Query: 288 FPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGE-GGDKTVVVFRR 338
           F     + FI    +E      +              D AG  G D   +    
Sbjct: 272 FRDDVED-FISIETVEACTVPASENLPVERVRYHAFVDPAGGSGKDSMTLAIAH 324


>gi|229815293|ref|ZP_04445628.1| hypothetical protein COLINT_02339 [Collinsella intestinalis DSM
           13280]
 gi|229809073|gb|EEP44840.1| hypothetical protein COLINT_02339 [Collinsella intestinalis DSM
           13280]
          Length = 474

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/327 (12%), Positives = 77/327 (23%), Gaps = 51/327 (15%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
           +F  P  WQ   ++ +       +  ++       IS  R  GK+ +        +    
Sbjct: 31  YFGAPMPWQPHLLDVMLATDGDGMYVNSE----VGISVPRQNGKSWVVRSRCFDGLMR-- 84

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
           G  I+   +                    P     E +   L          +  +  + 
Sbjct: 85  GEKILYTCHHGDTSDEMFQEL------KAPFEDDEEEELRDLLKYVRKTNGKQAIVLNNG 138

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW-I 225
                T RT S                 +  DEA    D+   ++L   +    +    I
Sbjct: 139 GTIRFTTRTDSGG--------RGKSFDVLIIDEAQELTDMQQAALLPAISAGKMHNPQTI 190

Query: 226 MTSNTRR----LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI------------ 269
                         +     +I   D +   ++    E  D                   
Sbjct: 191 YLGTPPGPKCLGTVFANLRKSILKGDSQMAWMEWGATEIGDKNDRARWYECNPSLGIVLE 250

Query: 270 -----ISRYGLDSDVARIEILGQFPQQEV--NNFIPHNYIEEAMSREAIDDLYAPLIMGC 322
                     +  D    E LG +       N  +P     +   R+A       L  G 
Sbjct: 251 LKAVESECNQMAPDTFARERLGWWADDAEVANPALPPGLWAKREVRKA--MAGGKLAFGV 308

Query: 323 DIAGEGGDKTVV----VFRRGNIIEHI 345
             + +G     +      R G     +
Sbjct: 309 KFSTDGR-TAAISWARAVRGGPSYVEL 334


>gi|239631909|ref|ZP_04674940.1| terminase large subunit [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239526374|gb|EEQ65375.1| terminase large subunit [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 630

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/369 (13%), Positives = 103/369 (27%), Gaps = 62/369 (16%)

Query: 15  LHEMLMHAECVLSF------------KNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAV 62
           L ++    E   SF             NF                 ++   WQ   +  +
Sbjct: 58  LQDLKRSLEGSHSFPFNYDLNKVSNILNFAAIC-----PDVDTGEPTKLMPWQAFILSQL 112

Query: 63  DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN 122
               + +         +  +S  RG GKT + + +  +          + ++N +  + +
Sbjct: 113 IGWRNQDGGKRFS---RAIVSVARGQGKTYMMSIIACYSYLVE----SLGLSNQDFLVAS 165

Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182
             + +  K    +       + +           L   S+  D                +
Sbjct: 166 INYKQTGKIYGYIKGMMKKVIANEPFRSLAAEVGLDTHSIQSDQILMRNNNNVLRPISHE 225

Query: 183 TFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
           +     + H      DE       D I+K I G     N     I T+  +    +  D 
Sbjct: 226 SGQYD-SYHFTTAIFDEIGEVESRDKISKIISGQVKVKNRQFVQISTAYPKPGVPFHEDQ 284

Query: 241 FNIPLEDWKRYQIDTRT-----------------------VEGIDSGFHEGIISRY---G 274
             I     + Y+ D  T                          +D      ++ +     
Sbjct: 285 KMIQQAMEQDYKRDADTYLGLIWAQDSLDETFKPETWVKSNPLLDLPDQREVLMQGLVDK 344

Query: 275 LDSDV-------ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE 327
            DSD+        + + L  + Q+  ++++    IE A+      D    + +G D +  
Sbjct: 345 RDSDMLSNNIGDFQNKNLNMWLQESSDSYLKLADIERAIIPSFDID-GRDVYIGFDYSMF 403

Query: 328 GGDKTVVVF 336
             D T + F
Sbjct: 404 -SDNTALAF 411


>gi|118443517|ref|YP_878252.1| PBSX family phage terminase large subunit [Clostridium novyi NT]
 gi|118133973|gb|ABK61017.1| phage terminase, large subunit, PBSX family [Clostridium novyi NT]
          Length = 419

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/263 (11%), Positives = 71/263 (26%), Gaps = 25/263 (9%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGM----SIICIANSETQLKNTLWAEVSKWLSMLP 136
            +  GRG  K++  +  +++ +          + +     +  L+ +++ ++   +  L 
Sbjct: 32  WLKGGRGSTKSSFISIEIIFNMMKDSKQGKVTNAVIFRRVKDTLRGSVFEQMLWAIEKLK 91

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
               +E+    L  +      +    G D+     + +                +     
Sbjct: 92  CESEWEVNYSPLKLTYKPLGTVILFKGADNPLKMKSIKVAKGYI---------KYIWYEE 142

Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN-GWFYDIFNIPLEDWKRYQIDT 255
            DE  G   I  ++I        P      + N       W         +D   +  + 
Sbjct: 143 VDEFEGYDKI--RNINQSLMRGGPKFCVFYSFNPPESQRNWANMEVLETRKDKLVHHSNY 200

Query: 256 RTVE--GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
             V    +   F         ++      + LG            +  I +    +    
Sbjct: 201 LGVPREWLGKQFILEAEHLKKVNHLKYEHDYLGA-VTGTGGEVFTNVTIRK--ITDEEIA 257

Query: 314 LYAPLIMGCDIAGEGGD---KTV 333
            +  +  G D  G   D    TV
Sbjct: 258 SFDRVHRGLDF-GYASDPLHYTV 279


>gi|167034415|ref|YP_001669646.1| hypothetical protein PputGB1_3419 [Pseudomonas putida GB-1]
 gi|166860903|gb|ABY99310.1| protein of unknown function DUF264 [Pseudomonas putida GB-1]
          Length = 433

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/272 (11%), Positives = 70/272 (25%), Gaps = 37/272 (13%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           AG G GKT +    +   +   P +     A +  Q+++  +  +               
Sbjct: 23  AGFGSGKTWVGCAALCKHVWEWPRIDSGYFAPTYPQIRDIFFPTIE-------------- 68

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
           +           +  ++ +   S     +         +               DE    
Sbjct: 69  EVAFDWGLKVKTKESDKEVEFYSGGQYRSTTICRSM--EKPQTIVGFKIGHALVDELDVL 126

Query: 204 P----DIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIF-------NIPLEDWKRY 251
           P    +   + I+      +   +  +  + T     + Y  F             +   
Sbjct: 127 PALKAEHAWRKIIARMRYNVPGLKNGVDVTTTPEGFKFVYQQFVKQLREKPALQGMYGLV 186

Query: 252 QIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY--IEEAMSR 308
           Q  T   E  +   +   ++  Y   + +    + GQF      +        +      
Sbjct: 187 QASTFDNELNLPPDYIPSLMESY--PAQLILAYLNGQFVNLNAGSIYHAYDRKLNSCFDT 244

Query: 309 EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGN 340
               +   PL +G D    G    +   +R +
Sbjct: 245 ---VEPGEPLFIGMDF-NVGKMAAITHVKRAD 272


>gi|296112059|ref|YP_003622441.1| putative terminase large subunit phage [Leuconostoc kimchii IMSNU
           11154]
 gi|295833591|gb|ADG41472.1| putative terminase large subunit phage [Leuconostoc kimchii IMSNU
           11154]
          Length = 432

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/258 (12%), Positives = 76/258 (29%), Gaps = 23/258 (8%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
                 GR   K++  +  +   + + P  +++C       LK +++ ++   L  L   
Sbjct: 22  NIIEKGGRASTKSSGISIYLAMGMMSDPDANVVCYRKVAGNLKRSVYEQIKWALDELHVS 81

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
             F  ++  +             +   +             +  +F      +   ++ +
Sbjct: 82  WLFRFKTSPMEI-----------IDRRNGSGFYFSGVDDPSKQKSFKIAKG-YVRWLWFE 129

Query: 199 EASGTPD-IINKSILGFFTELNPNRFW----IMTSNTRR-LNGWFYDIFNIPLE--DWKR 250
           EA+   +     ++   +T     +      I + N  R    W  +      +  D+  
Sbjct: 130 EATEFSNFTEIHTVQLSYTRQKLPKGMQVVTIFSYNPPRNPYDWINEWVESVSDDADFLV 189

Query: 251 YQIDTRT--VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR 308
                    +  +   +   I      D D  R + LG+ P     N    +  +     
Sbjct: 190 VHTTYLDDELHFLSEQYLHDIEKYKHNDYDYYRWQFLGE-PVGLGTNVYKMDLFQRLEHL 248

Query: 309 EAIDDLYAPLIMGCDIAG 326
           E ++D    L    D+  
Sbjct: 249 EDLNDSVVDLYFSADVGH 266


>gi|261885730|ref|ZP_06009769.1| hypothetical protein CfetvA_11664 [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 560

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/349 (14%), Positives = 116/349 (33%), Gaps = 44/349 (12%)

Query: 6   STDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQP--HRWQLEFMEAVD 63
           S+D   +  +   L+ A   L  +N V +      K +P+ + S P     +   +E  +
Sbjct: 89  SSDNSDDVVMLSELISALAKL--ENGVKKIKSIKDKPRPMLNLSSPVASELKKRILEKGN 146

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
           ++ +      +   F+  +   R IG + +++   L       G + + ++ SE Q    
Sbjct: 147 LYGYQKEFLQSDDSFRI-VLKSRQIGFSYVSSADALIGAVA--GRNQLFLSASEEQAL-I 202

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
           L   + KW S                    +A+  E  + + +           ++    
Sbjct: 203 LMRYLRKWASEFGVE---------------FAKDSEHEIALPNGAII-------KDLAHN 240

Query: 184 FVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           F       G  ++ DE +  P+   I  + +             + S        F++++
Sbjct: 241 FRTVQEFTGD-IWMDEFAWYPNPKKIWHAFVPSI--GAIKGRLTILSTPFEERSLFHELY 297

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHN 300
           +   + +   +        I+ G    + +   L D+D        QF   + ++ +   
Sbjct: 298 SDESKYYMFKRFCVSIYSAIEDGLDFDLETMRNLFDADTWASAYECQFVD-DESSLLSIA 356

Query: 301 YIEEAMSRE---AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
            I+  +  +           +  G DI     D++ +    G ++E + 
Sbjct: 357 LIKSCVYDKASYYTPKSNQVIYAGYDIGRV-SDRSTLA---GVVLEDVT 401


>gi|167041080|gb|ABZ05841.1| hypothetical protein ALOHA_HF400048F7ctg1g8 [uncultured marine
           microorganism HF4000_48F7]
          Length = 504

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/370 (13%), Positives = 97/370 (26%), Gaps = 47/370 (12%)

Query: 1   MPRLISTDQKLEQELHEMLMHA-ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFM 59
           M      DQ  E++  + L    +    ++          ++      F +P+ +QL F 
Sbjct: 1   MTTRQQADQWAEEQYLDGLDEVLKLRDEYE---------ELRRTNQMDFYEPYPYQLTFH 51

Query: 60  EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML---------WLISTRPGMSI 110
           EA D                  + AG  +GKT   A  +          W    R   +I
Sbjct: 52  EAKDDAGQRARQR--------CLMAGNKVGKTFSGAMELAYHLTGKYPDWWTGHRFDRAI 103

Query: 111 ICIAN--SETQLKNTLWAEVSKWLSMLPHRHW-FEMQSLSLHPSGWYAELLEQSMGIDSK 167
              A   S    ++ + +E+                + L +               +   
Sbjct: 104 HAWAAGKSHYATRDIVQSELIGEPGDPESFGTGAIPKDLIVKTERNPGVPNALGFVLVKH 163

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
                 R   +                V+ DE     +I ++++        P      T
Sbjct: 164 VSGRNSRLQFKSYDAGPASWMGVAVDYVWLDEEPPQ-EIYSQALRATLKSGGPVSL---T 219

Query: 228 SNTRRLNGWFYDIFNIPLEDWKR-YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
                       +F    +  +   Q        +     E I++       + R +   
Sbjct: 220 FTPEAGVTGVVAMFLNERKGGQALVQATWDDAPHLSLEVREEILAALPPHERLMRSKG-- 277

Query: 287 QFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF-----RRGNI 341
             P        P    +  +S  AI D ++  I G D    G D           R  ++
Sbjct: 278 -IPTLGSGQVFPVPEDQIMVSAFAIPDHFSR-IAGID---FGFDHPTACVWMAHDRDTDV 332

Query: 342 IEHIFDWSAK 351
           +     +  K
Sbjct: 333 VYLYDAYREK 342


>gi|148750837|ref|YP_001285878.1| putative terminase large subunit [Lactobacillus phage LL-H]
 gi|134105522|gb|ABO60921.1| putative terminase large subunit [Lactobacillus phage LL-H]
          Length = 433

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/324 (12%), Positives = 101/324 (31%), Gaps = 43/324 (13%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST----RPGMSIIC 112
              + ++ H     N   P         GRG  K+++ +  +++ +          +++C
Sbjct: 4   RLTDQINPHFRKLWNTRRPY---VIAKGGRGSFKSSVISIKLVFDMIKAINAGHKANVVC 60

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           I  + + L+++++ ++   + +L     F  ++  L                    +  +
Sbjct: 61  IRENASYLRDSVYNQILWAMDILKVSDQFRTRASPLKI-----------------EHIQS 103

Query: 173 CRTYSEERPDTFVGPHNTH---GMAVFNDEASGTPD-IINKSILGFFTELN----PNRFW 224
             T+     +  +   + +    +AV+ +E +   +  +    +  F             
Sbjct: 104 GSTFYFYGANDPMKLKSNNVGDIIAVWFEEFANLKNIDVFDQAVPTFIRQKPAWLGQAKV 163

Query: 225 IMTSNTRR-LNGWFYDIFNIPLEDWKRYQIDTRTVEG----IDSGFHEGIISRYGLDSDV 279
             + N  +    W  +       D   +   +  ++           + I S    D D 
Sbjct: 164 YCSYNPPKNPYLWINEWITQKENDPNFFIDHSTYLDDKLGFTTKQQLDMIDSYKENDFDY 223

Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF--- 336
            R   LG+       N    +     +      D    +  G D   E    TVV     
Sbjct: 224 YRWLYLGE-VVGLGTNVYNMDLF-HPVDSIPDGDYITDVYYGMDAGHEVSATTVVAVGLT 281

Query: 337 RRGNIIEHIFDWSAKLIQETNQEG 360
           R+G++   +  +      +TN++ 
Sbjct: 282 RKGDVYL-LDTYYYSPAGKTNKKP 304


>gi|319400037|gb|EFV88278.1| phage Terminase family protein [Staphylococcus epidermidis FRI909]
          Length = 571

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/293 (11%), Positives = 81/293 (27%), Gaps = 31/293 (10%)

Query: 19  LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78
           +   E  L    F+   F   IKGK      +   WQ   +  +    +           
Sbjct: 57  IYSPEHALHPIEFIE-SFCKHIKGKYAGTPIELELWQKAGIATIFGFINKKTKERKYQEI 115

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLP 136
              ++  R  GK+T+++ + L+L+      G  +  +A  + Q K  +W +  K ++  P
Sbjct: 116 FWVVA--RKNGKSTISSGIALYLLGADGEGGPEVYTVATKKDQAK-IVWNDAKKMVNKSP 172

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
                 +  ++   + +    L                   +      +  H        
Sbjct: 173 LLKLDFVTKVAEILTPFNDGQLIP--------------LGRDSDTTDGLNVHG-----AI 213

Query: 197 NDEASGT-PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255
            DE        +   +    +  +      +T+     N  +   +              
Sbjct: 214 MDEVHAWKTMQMYDVVFDGISARDNPLILAITTAGTIRNSVYDIKYEESE---NIINGLW 270

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR 308
                 +  F   I      +  +     L   P   + +    + I+  ++R
Sbjct: 271 EDEGYKNERFLPLIYELDSREEWIDESCWLKANP--GLGSIKKIDAIKTKVNR 321


>gi|166031069|ref|ZP_02233898.1| hypothetical protein DORFOR_00750 [Dorea formicigenerans ATCC
           27755]
 gi|166029336|gb|EDR48093.1| hypothetical protein DORFOR_00750 [Dorea formicigenerans ATCC
           27755]
          Length = 454

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 80/263 (30%), Gaps = 26/263 (9%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
           +N  +    +++GR   K++  A    + I + P  S + +     +L+ T++ E+ + +
Sbjct: 10  NNRKVKHIILTSGRAGTKSSYAAIRTDYQIVSDPHGSAVVLRKHHNKLRKTVYKEMIRGI 69

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
           + L               +   + +        +  Y        + +            
Sbjct: 70  NRLGIS--------KKKFAITKSPMEITYKKYGTTIYFSGSDGIDDTKGIIDEDK---PI 118

Query: 193 MAVFNDEAS-----GTPDIINKSILGFFTELNPNRF-WIMTSNTRR----LNGWFYDIFN 242
             V  DE +     G  +    +I   F   N + F  I   N  +        +     
Sbjct: 119 KLVVLDELTEFFDDGEGEDELSNIEATFVRGNSSGFQMIYLYNPPKNPNAPINQWCKKME 178

Query: 243 IPLEDWKRYQIDTRTVE--GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
              +       D R V    +     +   +    D  + R   LGQ     V+  I + 
Sbjct: 179 KREDCIH-IHTDYRDVPVSWLGQALVDSAEAMKRADEKMYRWVWLGQ--AVGVDELIYYM 235

Query: 301 YIEEAMSREAIDDLYAPLIMGCD 323
           + +    +   +  Y  + +G D
Sbjct: 236 FGDRHRQKPDPNRRYDRIYIGGD 258


>gi|213967396|ref|ZP_03395544.1| hypothetical protein PSPTOT1_3739 [Pseudomonas syringae pv. tomato
           T1]
 gi|213927697|gb|EEB61244.1| hypothetical protein PSPTOT1_3739 [Pseudomonas syringae pv. tomato
           T1]
          Length = 496

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/346 (12%), Positives = 90/346 (26%), Gaps = 79/346 (22%)

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126
              ++       +  I   R +G TTL   + L   +         IA++    K     
Sbjct: 36  QEQIDYFQGMHTRNIILKARQLGFTTLVCIVQL-DAALFESAKCALIAHTLNDAKRLFRE 94

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
           ++      LP           +  +   +      +            ++      T   
Sbjct: 95  KIKYAYDNLPK---------EIRAANPASNDAAGELVFSKGGSLYVSTSFRG---GTLRY 142

Query: 187 PHNTHGMAVFNDEASGT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242
            H          E        P    + + G F  +  + F  + S      G+F+D   
Sbjct: 143 LH--------VSEFGKICAKFPHKAREIVTGAFEAVAADCFVTIESTAEGRAGYFFDYSQ 194

Query: 243 IPLE-----------DWKRYQIDTRTV------------EGIDSGFHEGIISRYGLDSDV 279
              +           DWK +                       + +   + +++G+ ++ 
Sbjct: 195 SAEKQQLSGVPLGKLDWKFFFFSWWRNGLYWLDPAEVVIPQRLTDYFNELQAKHGIVTNP 254

Query: 280 ARIEI-------LGQ-------------FPQQEVNNFIPHNYIEEAMSREAIDDL---YA 316
            +          LG              F Q     +    + +   ++         + 
Sbjct: 255 GQRAWYSAKEKSLGDDMKREYPSLPAEAFQQSVEGAYYAKQFAKLYANKRIGVIPNNSHQ 314

Query: 317 PLIMGCDIAGEGGDKTVVVFRRGNIIEHIF-DWSAKLIQETNQEGC 361
           P++   DI    GD T + F     +  I  ++      E + EG 
Sbjct: 315 PVMTFWDIGV--GDSTAIWF-----VRQIGTEYHVIDYYENSGEGL 353


>gi|323691285|ref|ZP_08105560.1| phage terminase [Clostridium symbiosum WAL-14673]
 gi|323504625|gb|EGB20412.1| phage terminase [Clostridium symbiosum WAL-14673]
          Length = 591

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/317 (12%), Positives = 85/317 (26%), Gaps = 56/317 (17%)

Query: 69  NVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWL--ISTRPGMSIICIANSETQLKNTLW 125
                    F+ + +  GR  GK+ +N  +  +           I C A  + Q  N ++
Sbjct: 89  RTKEKGHRRFRTSYVQLGRQNGKSFINGILACYYGNFDGYKYGKIFCTATKQDQA-NIVF 147

Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185
            E+ K+++                     +E  +      +     T         DT  
Sbjct: 148 DEIVKFIN----------------SDEDLSEWFKVHEHNHTIDCLCTHSEIKALSGDT-K 190

Query: 186 GPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-- 242
                       DE  +   + + K + G   +L      ++T+    L    Y ++   
Sbjct: 191 SLDGHRAYLGIVDEYHAHKTNQMYKLLEGGIKKLKSALISVITTAGFDLKSPCYKLYEYC 250

Query: 243 --------------------------IPLEDW---KRYQIDTRTVEGIDSGFHEGIISRY 273
                                        E+W                            
Sbjct: 251 CNLLKGVFENDSQFVYIAQLDTADDLYKKENWIKANPILEYDEDALENLVPVANTARDMG 310

Query: 274 GLDSDVARIEILGQFPQQEVNNFIP--HNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDK 331
           G D     ++ L  + Q     +I    ++   A  R   D   +   +G D++  GGD 
Sbjct: 311 GEDLRDFLVKQLNMWMQWSNALYIKDIKDWKRCAALRTLKDFRGSKCYVGVDLS-SGGDL 369

Query: 332 TVVVFRRGNIIEHIFDW 348
           T +      +++ +  +
Sbjct: 370 TSIAIVIPYMVDGVKKY 386


>gi|149012736|ref|ZP_01833712.1| terminase large subunit [Streptococcus pneumoniae SP19-BS75]
 gi|147763336|gb|EDK70274.1| terminase large subunit [Streptococcus pneumoniae SP19-BS75]
          Length = 432

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 86/291 (29%), Gaps = 25/291 (8%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTI--FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
           Q + +  +     +       +   ++  +   RG  K+   A   +  +   P  +++ 
Sbjct: 9   QSDIVIDLPKTVGAGYGQFWRSRNLYRV-VKGSRGSKKSKTTALNYVIRLLKYPWANLLV 67

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           I       K + + +     ++L   H F+                   + I +    I 
Sbjct: 68  IRRYSNTNKQSTYTDFKWACNVLGVTHLFKFNES------------LPEITIKATGQKIL 115

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI-----INKSILGFFTELNPNRFWIMT 227
            R   +E   T +          + +EA           + +SI G     +  +   +T
Sbjct: 116 FRGLDDELKITSITVDVGSLCWAWFEEAYQIETEDKFSTVVESIRGSLDVPDFFKQITVT 175

Query: 228 SNTRRLNGWFYDIF---NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
            N      W   +F        D        +  E +D    +     Y  +   ARI  
Sbjct: 176 FNPWNERHWLKRVFFDEETRRADTFATTTTYKCNEWLDEVDIKRYEDLYHTNPRRARIVC 235

Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335
            G++          +  +++    E + D    L +G D  G   D T + 
Sbjct: 236 DGEW-GVAEGLIYENVTVKDFNKDELLQDSANKLCIGLDF-GFTHDPTALC 284


>gi|284800945|ref|YP_003412810.1| terminase large subunit [Listeria monocytogenes 08-5578]
 gi|284056507|gb|ADB67448.1| terminase large subunit [Listeria monocytogenes 08-5578]
          Length = 583

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/301 (12%), Positives = 90/301 (29%), Gaps = 37/301 (12%)

Query: 65  HCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTRPG---MSIICIANSETQL 120
           H        N   FK A +   R  GK+ L A +ML+             +  A ++ + 
Sbjct: 102 HGWYKKGKKNVRRFKTALVMMARKNGKSILIAGLMLYEFLFFKNPQMSRQMFCAGNDKKQ 161

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH------YTITCR 174
            + ++  V+K+L  L  +     ++           + +  +   S+       +     
Sbjct: 162 ASLVFKMVAKFLRALSLQDKQVRKATKKVREEIRNLIDDSFIIPLSRDTSSLDGFEPQFT 221

Query: 175 TYSEERPDTFVGP---------HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225
           +  E    T                  +      A    +          T + P    I
Sbjct: 222 SMDEAHEYTDDEIFELIESGQGQLESPLTFIISTAGFKLNGWLY------TTMYPYAKSI 275

Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI--------DSGFHEGIISRYGLDS 277
           +  N      + +       ++W+      ++   +        +  +    I      +
Sbjct: 276 LAGNVIDDEMFVFIAEQDFADEWQDETTWIKSNPILEIKAKYEDNMEYLRKRIKTGIEQN 335

Query: 278 DVARIEILG--QFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335
            + R  +     + Q    +++     + A + +A       + +G D++ +GGD + + 
Sbjct: 336 KIFRRLVKNFNYWMQASEESYMDSKDWKAAGTSDADI-YGKDVYIGVDLS-KGGDISALG 393

Query: 336 F 336
           F
Sbjct: 394 F 394


>gi|206600184|ref|YP_002241790.1| gp3 [Mycobacterium phage Ramsey]
 gi|206287272|gb|ACI12615.1| gp3 [Mycobacterium phage Ramsey]
          Length = 495

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/328 (10%), Positives = 81/328 (24%), Gaps = 43/328 (13%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           +  RWQ +   A            +      +I+  R  GKT      ++ +  +RPG  
Sbjct: 46  EFDRWQEDIWYAALGLREDGTLACDVMGVTLSIA--RQAGKTWGIMVGLIAICLSRPGTL 103

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           ++  ++ +     TL  +++  +     R                     + +   +   
Sbjct: 104 VVWSSHHDRTSSETL-TKIAGIVEKPAIRPKMRP------MHPVVQSDDNRGVHFANGSR 156

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
            +                  +       DE     +     +L     ++          
Sbjct: 157 ILFGARAQGFGRG------FSEVDIQVYDECQNLKESALTDMLAAM-NVSEIGLAFFMGT 209

Query: 230 TRRLNGW---FYDIFNIPLEDW------KRYQIDTRT-VEGIDSGFHEGIISRYGLD--- 276
             R        +D F    +        + ++                 I +    D   
Sbjct: 210 PPRPQEVALGVHDAFKRRRDRALEQKKRRPFKGVYVEFAPESPDDVVADIDAPGFWDRLA 269

Query: 277 --SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI-------MGCDIAGE 327
             +      +     ++ V N  P +   E        +  + ++       + CD+   
Sbjct: 270 EANPSFGHRVGKSAIERLVENMSPEDVRREVFGIWDKTNEVSSVVPGDQWRSLCCDVDDL 329

Query: 328 GGDKTVVVF---RRGNIIEHIFDWSAKL 352
           G D +       R G     +  WS   
Sbjct: 330 G-DVSAFGVSATRSG-WFWIVACWSGVD 355


>gi|321157116|emb|CBW39102.1| Phage terminase [Streptococcus phage 23782]
          Length = 470

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/299 (12%), Positives = 85/299 (28%), Gaps = 49/299 (16%)

Query: 54  WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113
           WQ+  + ++     + +       +       R  GK+ L     LW +    G++I+  
Sbjct: 43  WQVNLLTSIMAVDKNGLWVHQKFGYSI----PRRNGKSELLYLFELWGL--HNGLNILHT 96

Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173
           A+  +    + + +V  +L  + +    +  S+               +           
Sbjct: 97  AHRISTSH-SSFEKVKCYLEKMGYVDGEDFSSIRAKGQ------ERIELFDGGGIVQFRT 149

Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR-- 231
           RT +                 +  DEA         ++    T+ +     IM       
Sbjct: 150 RTSNGGL--------GEGFDLLVIDEAQEYTTEQESALKYTVTDSSNPIT-IMCGTPPTP 200

Query: 232 ------------------RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE-GIISR 272
                                  + +      ++         +   +    +E  I + 
Sbjct: 201 VSNGTVFTNYRKNCLFGKGKYSGWAEWSVSEEKEIDDVDAWYNSNPSMGYHLNERKIEAE 260

Query: 273 YGLDSDVARIEILGQFPQQEVNNFIP-HNYIEEAMSREAIDDLYAPLIMGCDIAGEGGD 330
            G D     ++ LG +P+    + I    + E  +  +++ DL   L +G      G D
Sbjct: 261 LGDDKLDHNVQRLGYWPEYNQKSAISETEWNELCV--DSMPDLSGKLFVGV---KYGQD 314


>gi|148543902|ref|YP_001271272.1| phage terminase [Lactobacillus reuteri DSM 20016]
 gi|184153299|ref|YP_001841640.1| phage large terminase subunit [Lactobacillus reuteri JCM 1112]
 gi|227364811|ref|ZP_03848859.1| bacteriophage terminase large subunit [Lactobacillus reuteri MM2-3]
 gi|325682564|ref|ZP_08162081.1| prophage Lp3 protein 15 [Lactobacillus reuteri MM4-1A]
 gi|148530936|gb|ABQ82935.1| phage Terminase [Lactobacillus reuteri DSM 20016]
 gi|183224643|dbj|BAG25160.1| phage large terminase subunit [Lactobacillus reuteri JCM 1112]
 gi|227070155|gb|EEI08530.1| bacteriophage terminase large subunit [Lactobacillus reuteri MM2-3]
 gi|324978403|gb|EGC15353.1| prophage Lp3 protein 15 [Lactobacillus reuteri MM4-1A]
          Length = 569

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/304 (13%), Positives = 85/304 (27%), Gaps = 55/304 (18%)

Query: 69  NVNNSNPTIF-KCAISAGRGIGKTTLNAWMMLWLISTRP----GMSIICIANSETQLKNT 123
              + N   F +  +S  R  GK+ L A + +  +           I+  ANS  Q    
Sbjct: 85  RQVDDNSLRFNRILLSEARKNGKSFLLAAIGVVSLLMEKQPARNRQILFTANSSQQAH-L 143

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
            +  +S  L  L             +       +      +  K         S +   T
Sbjct: 144 AFDIMSDQLENL-----------RRNSKYLRQRVKINKQRVTDKKTGSFAIPLSTDTHST 192

Query: 184 FVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNPNRFWIM---------------- 226
                  +      DE     D     ++     + +     I+                
Sbjct: 193 D----GYNPTLGVVDEYHQAKDNTILNALNSGMAQQDNGILAIISTAGFNLNSPFKNEWD 248

Query: 227 ----TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT--VEGIDSGFHEG-IISRYGLDSDV 279
                 N++  N  ++ +     +  + +  +        + +      +      D DV
Sbjct: 249 YAADILNSKIKNDRYFAVMYCLDKKEEIFNPEMWIKANPLMSNPKIAKTMREHIQNDLDV 308

Query: 280 A---------RIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGD 330
           A          ++ +  F QQ  N++I     E  +  +A D     + +G D++    D
Sbjct: 309 ATKQNNINNVLVKNMNMFVQQNENSYISTQDWEHGLIEKAPDISNRDVYIGADLSKS-RD 367

Query: 331 KTVV 334
            T +
Sbjct: 368 LTAI 371


>gi|302132892|ref|ZP_07258882.1| putative phage terminase large subunit [Pseudomonas syringae pv.
           tomato NCPPB 1108]
          Length = 496

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/346 (12%), Positives = 90/346 (26%), Gaps = 79/346 (22%)

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126
              ++       +  I   R +G TTL   + L   +         IA++    K     
Sbjct: 36  QEQIDYFQGMHTRNIILKARQLGFTTLVCIVQL-DAALFESAKCALIAHTLNDAKRLFRE 94

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
           ++      LP           +  +   +      +            ++      T   
Sbjct: 95  KIKYAYDNLPK---------EIRAANPASNDAAGELVFSKGGSLYVSTSFRG---GTLRY 142

Query: 187 PHNTHGMAVFNDEASGT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242
            H          E        P    + + G F  +  + F  + S      G+F+D   
Sbjct: 143 LH--------VSEFGKICAKFPHKAREIVTGAFEAVAADCFVTIESTAEGRAGYFFDYSQ 194

Query: 243 IPLE-----------DWKRYQIDTRTV------------EGIDSGFHEGIISRYGLDSDV 279
              +           DWK +                       + +   + +++G+ ++ 
Sbjct: 195 SAEKQQLSGVPLGKLDWKFFFFSWWRNGLYWLDPAEVVIPQRLTDYFNELQAKHGIVTNP 254

Query: 280 ARIEI-------LGQ-------------FPQQEVNNFIPHNYIEEAMSREAIDDL---YA 316
            +          LG              F Q     +    + +   ++         + 
Sbjct: 255 GQRAWYSAKEKSLGDDMKREYPSLPAEAFQQSVEGAYYAKQFAKLYANKRIGVIPNNSHQ 314

Query: 317 PLIMGCDIAGEGGDKTVVVFRRGNIIEHIF-DWSAKLIQETNQEGC 361
           P++   DI    GD T + F     +  I  ++      E + EG 
Sbjct: 315 PVMTFWDIGV--GDSTAIWF-----VRQIGTEYHVIDYYENSGEGL 353


>gi|154496017|ref|ZP_02034713.1| hypothetical protein BACCAP_00300 [Bacteroides capillosus ATCC
           29799]
 gi|150274900|gb|EDN01956.1| hypothetical protein BACCAP_00300 [Bacteroides capillosus ATCC
           29799]
          Length = 415

 Score = 55.7 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 64/250 (25%), Gaps = 30/250 (12%)

Query: 87  GIGKTTLNA-WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
             GKT       + W ++     +      +   L+  L   +   L  L  R   ++  
Sbjct: 34  RSGKTFCMGLSFVCWAMARFQNTAFGLCGKTTVSLRRNLVRGLIPVLEELGFRCEEKVSR 93

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
             L       E               T   +      +           V  DE +  P 
Sbjct: 94  NLLTVRRGGQEN--------------TFYLFGGRDEGSAALIQGVTLAGVLLDEVALMPR 139

Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR--YQIDTRTVEGIDS 263
              +      +      ++    N      WFY  +    E+ +            G+  
Sbjct: 140 SFVEQACARCSVAGSRLWFNC--NPEGPEHWFYKEWIQKAEERRALYLHFTMEDNPGLRP 197

Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
                    +       R  +LG++   E   +   ++ +E+   E   D  +   + CD
Sbjct: 198 EVKARYGRMFSG--AFYRRFVLGEWVAAEGRVY---DFFDESY-LEEPPDGLSRWCISCD 251

Query: 324 -----IAGEG 328
                 A  G
Sbjct: 252 YGTVNPASFG 261


>gi|32469469|ref|NP_862877.1| gp38 [Streptococcus phage SM1]
 gi|32441621|gb|AAP81920.1| gp38 [Streptococcus phage SM1]
          Length = 459

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/300 (12%), Positives = 79/300 (26%), Gaps = 47/300 (15%)

Query: 54  WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113
           WQ   +  +     + +       +       R  GK+ L     +W +    G++I+  
Sbjct: 43  WQKNLLLPMMAVDKNGLWVHQKFGYSI----PRRNGKSELLYIGEIWGL--HEGLNILHT 96

Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173
           A+  +      + +V ++L  + +    +  S+               +           
Sbjct: 97  AHRISTSH-ASFEKVKRYLEKMGYVDGEDFNSIRAKGQ------ERIELYSTGGVIQFRT 149

Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233
           RT +                 +  DEA         ++    T+       IM       
Sbjct: 150 RTSNGGL--------GEGFDMLIIDEAQEYTTEQESALKYTVTDSENPIT-IMCGTPPTP 200

Query: 234 NGW--------------------FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE-GIISR 272
                                  + +      ++    +    +   +    +E  I + 
Sbjct: 201 VSSGTVFTKYRETCLFGKGKYSGWAEWSVSDEKEIDDVEAWYNSNPSMGYHLNERKIEAE 260

Query: 273 YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKT 332
            G D     I+ LG +P     + I      E    +   +L   L +G      G D T
Sbjct: 261 LGEDKLDHNIQRLGFWPTYNQKSAISETEWNELKMDDI-PELSGKLSVGI---KYGQDGT 316


>gi|320160638|ref|YP_004173862.1| hypothetical protein ANT_12280 [Anaerolinea thermophila UNI-1]
 gi|319994491|dbj|BAJ63262.1| hypothetical protein ANT_12280 [Anaerolinea thermophila UNI-1]
          Length = 1068

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 68/244 (27%), Gaps = 30/244 (12%)

Query: 15  LHEMLMHAECVLSF---KNFVMRFFPWGI----------KGKPLEHFSQPHRWQLEFMEA 61
           L  M+  A     F   + F+    P G               L+ F  P          
Sbjct: 498 LTRMIYSALVDADFQETEIFMKGVKPRGEYDDIPTLQRKLDTYLKQFENPTSDINRKRNE 557

Query: 62  VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121
           +   C     N  P  F   +    G GKT  +    L   +T     II +    T ++
Sbjct: 558 ILHACIEKGENEKPGFFSLTV--PTGGGKTLASIAFALHHAATHGLKRIIYVIPFTTIIE 615

Query: 122 N--TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY---------T 170
               ++ E+    ++L H   F+        +      +   + + ++++          
Sbjct: 616 QNAQVFKEIFGEENVLEHHSNFDWNDGKREDADNRTNSILAKLKLAAENWDIPIVVTTNV 675

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII----NKSILGFFTELNPNRFWIM 226
               +  + +       HN     +  DEA   P         ++    T    +  +  
Sbjct: 676 QFFESLFDNKSSRCRKLHNIAKSVIIFDEAQMLPKEYIRPAMAAVWELVTNYGASAVFCT 735

Query: 227 TSNT 230
            +  
Sbjct: 736 ATQP 739


>gi|251777966|ref|ZP_04820886.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|243082281|gb|EES48171.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 417

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/251 (13%), Positives = 65/251 (25%), Gaps = 19/251 (7%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
             GRG  K++  +  ++  I       I+  A    ++K+TL   V   +          
Sbjct: 32  KGGRGSTKSSFISIEIVLGIMKDAQEGIMSNALILRRVKDTLSESVRDQIKWAIDILGV- 90

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF---NDE 199
                     W     + ++   S    I  +     +          +   ++    DE
Sbjct: 91  -------SDDWIIPEAKLTITYKSTGQVIRFKGADNPKKVKSTKVPKGYIKYIWYEEVDE 143

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN-GWFYDIFNIPLEDWKRYQIDTRTV 258
             G   I  ++I        P  F   + N       W         ED   +     TV
Sbjct: 144 FEGYDKI--RNINQSLMRGGPKFFVFYSFNPPESQRNWANLEVLDKREDKLIHHSTYLTV 201

Query: 259 E--GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA 316
               +   F          ++     + LG+           +  I +    +     + 
Sbjct: 202 PRDWLGEPFITEAEDLKEKNTTKYEHDYLGK-VTGTGAEIFDNVVIRK--ISDEEVRSFD 258

Query: 317 PLIMGCDIAGE 327
            L  G D    
Sbjct: 259 RLYRGVDFGWF 269


>gi|139472824|ref|YP_001129382.1| ORF29 [Human herpesvirus 8]
 gi|2246552|gb|AAB62677.1| ORF 29 [Human herpesvirus 8]
 gi|87196854|gb|ABD28880.1| ORF29 [Human herpesvirus 8]
 gi|261853505|gb|ACY00427.1| ORF29 [Human herpesvirus 8]
 gi|312275173|gb|ADQ57910.1| core gene UL15 family protein [Human herpesvirus 8]
          Length = 687

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 15/163 (9%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GKT +   ++  L+++   ++I  +A+ +    N+++AE+ K L       WF  +
Sbjct: 222 PRRHGKTWIVVAIISMLLASVENINIGYVAHQKHVA-NSVFAEIIKTL-----CRWFPPK 275

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
           +L++                 S                            ++ DEA+   
Sbjct: 276 NLNIKKENGTIIYTRPGGRSSSLMCATCF---------NKNSIRGQTFNLLYVDEANFIK 326

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
                +ILGF  + +    +I + N+   +  F        E 
Sbjct: 327 KDALPAILGFMLQKDAKLIFISSVNSSDRSTSFLLNLRNAQEK 369


>gi|1136808|gb|AAB08384.1| gene 29 protein [Human herpesvirus 8]
          Length = 687

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 15/163 (9%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GKT +   ++  L+++   ++I  +A+ +    N+++AE+ K L       WF  +
Sbjct: 222 PRRHGKTWIVVAIISMLLASVENINIGYVAHQKHVA-NSVFAEIIKTL-----CRWFPPK 275

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
           +L++                 S                            ++ DEA+   
Sbjct: 276 NLNIKKENGTIIYTRPGGRSSSLMCATCF---------NKNSIRGQTFNLLYVDEANFIK 326

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
                +ILGF  + +    +I + N+   +  F        E 
Sbjct: 327 KDALPAILGFMLQKDAKLIFISSVNSSDRSTSFLLNLRNAQEK 369


>gi|330989588|gb|EGH87691.1| hypothetical protein PLA107_31509 [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 433

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/270 (11%), Positives = 69/270 (25%), Gaps = 33/270 (12%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           AG G GKT +    +   +   P ++    A +  Q+++  +  +               
Sbjct: 23  AGFGSGKTWVGCAGICKHVWEWPRINSGYFAPTYPQIRDIFFPTIE-------------- 68

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
           +           +  ++ +   S     +         +               DE    
Sbjct: 69  EVAFDWGLKVKTKESDKEVEFYSGGQYRSTTICRSM--EKPQTIVGFKIGHALVDELDVL 126

Query: 204 P----DIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIF-------NIPLEDWKRY 251
           P    +   + I+          +  +  + T     + Y  F             +   
Sbjct: 127 PALKAEHAWRKIIARMRYNAPGLKNGVDVTTTPEGFKFVYQQFVKQLREKPGMQGMYGLV 186

Query: 252 QIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
           Q  T   E  +   +   ++  Y     +    + GQF      +     Y  +      
Sbjct: 187 QASTFDNELNLPPDYIPSLMESY--PPQLILAYLNGQFVNLNAGSIYH-AYDRKLNGCFD 243

Query: 311 IDDLYAPLIMGCDIAGEGGDKTVVVFRRGN 340
                 PL +G D    G    +   +R +
Sbjct: 244 SVQDGEPLFIGMDF-NVGKMAAITHVKRAD 272


>gi|149196474|ref|ZP_01873529.1| hypothetical protein LNTAR_14992 [Lentisphaera araneosa HTCC2155]
 gi|149140735|gb|EDM29133.1| hypothetical protein LNTAR_14992 [Lentisphaera araneosa HTCC2155]
          Length = 609

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/202 (11%), Positives = 50/202 (24%), Gaps = 11/202 (5%)

Query: 68  SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127
             + N N    +      R +GKT   + ++      R   + + +A    Q      A+
Sbjct: 70  RPLFNLNLEAQQVTYQCCRQVGKTESLSSLVCLKARVRDNYNSLVVAPRHEQATRISAAK 129

Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187
              +L         +    SL          E ++   +K Y I C         +    
Sbjct: 130 TIPFLKESLAAKLPKFYVDSLR----DVHKQEITLKNQNKIYFIGCYL-------SPDAA 178

Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
                  V+ DE           +                   +  +G   + F    + 
Sbjct: 179 RGLSTECVYYDEYQDINPEHTPVVNACKDGSMLYGEEYYFGTPKSTSGPLTEKFMEGSQG 238

Query: 248 WKRYQIDTRTVEGIDSGFHEGI 269
           +      +   E   +   +  
Sbjct: 239 YWCVSCPSCDKEVWANDDIDDA 260


>gi|300717758|ref|YP_003742561.1| phage terminase large subunit [Erwinia billingiae Eb661]
 gi|299063594|emb|CAX60714.1| putative phage terminase large subunit [Erwinia billingiae Eb661]
          Length = 494

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/333 (13%), Positives = 81/333 (24%), Gaps = 78/333 (23%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  I   R +G TT    + L   +         IA++    K     +V      LP  
Sbjct: 48  RNIILKARQLGFTTEVCIIQL-DAALFESAKCALIAHTLNDAKRLFREKVKYAYDNLPD- 105

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                    +  +   +      +            ++      T    H          
Sbjct: 106 --------EIKAANPASNDSAGELVFKKGGSLYVSTSFRG---GTLRYLH--------VS 146

Query: 199 EASGT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-------- 246
           E        PD   + + G F  ++   F  + S      G+F+D      +        
Sbjct: 147 EFGKICAKYPDKAREIVTGAFEAVSTGCFATIESTAEGRAGYFFDYCQTAEKALLQGKKL 206

Query: 247 ---DWKRYQIDTRTVEGIDSGFHE-----------GIISRYG----LDSDVARI---EIL 285
              DWK +               E            + +++G               + L
Sbjct: 207 SPLDWKFFFFSWWKNPQYAIDPVEALPQRLVDYFDEMEAKHGVILNERQKAWYFAKEKTL 266

Query: 286 GQ-------------FPQQEVNNFIPHN---YIEEAMSREAIDDLYAPLIMGCDIAGEGG 329
           G              F Q     +                  D+ + P+    DI    G
Sbjct: 267 GDDMKREYPTIPAEAFQQSVEGAYYAKQFRWLYTNKRIGTLPDNSHLPVHTFWDIGV--G 324

Query: 330 DKTVVVFRRGNIIEHIF-DWSAKLIQETNQEGC 361
           D T + F     +  +  ++      E + EG 
Sbjct: 325 DSTAIWF-----VREVGEEFHVIDYYENSGEGL 352


>gi|162452343|ref|YP_001614710.1| hypothetical protein sce4067 [Sorangium cellulosum 'So ce 56']
 gi|161162925|emb|CAN94230.1| hypothetical protein predicted by Glimmer/Critica [Sorangium
           cellulosum 'So ce 56']
          Length = 414

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/273 (10%), Positives = 64/273 (23%), Gaps = 26/273 (9%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG-------MSIICIANSETQLKNTLW 125
                    +  GR  GK++    + +                ++  ++ S  +    L 
Sbjct: 39  YMSGRRTLVLRVGRRGGKSSTLCRLAVVEALFGEHDIPPGDVGTVPIVSTSRDEAAARL- 97

Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185
             +   L  L        +++ L          +      +     T      +    + 
Sbjct: 98  RTIEAILRALGVDFRKAGEAIELQRDDGAPVAFKVFAASIAGVSGFTAIAAICDEVAKWQ 157

Query: 186 GPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL 245
                       D A+   + I  S+        P     ++S+        YD F    
Sbjct: 158 DR----------DTAANPAEEILTSLRPTMATQ-PQARLFLSSSPLSTLDAHYDAFERGE 206

Query: 246 EDWKR--YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
              +   +         I     E        D+ V   E     PQ  ++     + ++
Sbjct: 207 TPTQCVAHAPTWTANPSIS----EQDTRALEADARVWAREYRAI-PQAAISAAFDPDAVD 261

Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
            A             ++  D +    D      
Sbjct: 262 RAFRDPGCSYHAGERVLVLDPSSGRNDSFTYAV 294


>gi|109521463|ref|YP_655891.1| gp26 [Mycobacterium phage Wildcat]
 gi|91980915|gb|ABE67631.1| gp26 [Mycobacterium phage Wildcat]
          Length = 537

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/272 (8%), Positives = 58/272 (21%), Gaps = 33/272 (12%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             WQ   +  +          ++  +        R  GKT +     L  +        I
Sbjct: 62  DPWQEFVLRNMLNLDAQGHWAASEALLLV----PRQNGKTAIIEARELVGLYVVCDKLCI 117

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A      + + +   ++  +              +       + +   +    +    
Sbjct: 118 HTAVLFNAARESFYRLKARIENN--------ETLNKITRFRSGNDNMSIEVKPKKESRHP 169

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN-- 229
                                  +  DEA    +    +I    +          +S   
Sbjct: 170 NAGGRVIYMARGTAVARGFSADVIVLDEAFALDEASIAAIDYATSARANPFIIYASSTGL 229

Query: 230 -----------------TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISR 272
                               L   +        ++   Y+ +      I         +R
Sbjct: 230 EDSTELEKLHDRGMRQDPDMLFMEWCATTRDLDDEENYYRSNPALGYRISIERIRKERNR 289

Query: 273 YGLDSDVARIEILGQFPQQEVNNFIPHNYIEE 304
           +   +     E LG +     N  IP +  + 
Sbjct: 290 HSDKT--FGRERLGLWNDNAFNAVIPADQWKS 319


>gi|148379681|ref|YP_001254222.1| terminase large subunit [Clostridium botulinum A str. ATCC 3502]
 gi|237795044|ref|YP_002862596.1| phage terminase, large subunit, PBSX family [Clostridium botulinum
           Ba4 str. 657]
 gi|148289165|emb|CAL83259.1| terminase large subunit [Clostridium botulinum A str. ATCC 3502]
 gi|229261270|gb|ACQ52303.1| phage terminase, large subunit, PBSX family [Clostridium botulinum
           Ba4 str. 657]
          Length = 419

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 66/262 (25%), Gaps = 20/262 (7%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
             GRG  K++  +  ++  I        +  A    ++K+TL   V   +          
Sbjct: 32  KGGRGSTKSSFISIEIVLGIMRDAQEGKLTNALILRRVKDTLSESVRDQIKWAIDILGV- 90

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF---NDE 199
                     W+    + ++        I  +     +          +   ++    DE
Sbjct: 91  -------SDEWHIPEAKLTITYKPTGQVIRFKGADNPKKVKSTKVPKGYIKYIWYEEVDE 143

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN-GWFYDIFNIPLEDWKRYQIDTRTV 258
             G   I   +I        P  F   + N       W         +D   +  D R V
Sbjct: 144 FEGKNKI--DTINQSLMRGGPKFFVFYSFNPPESQRNWCNQEVVETRKDKYVHHSDYRLV 201

Query: 259 E--GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA 316
               +   F         ++      + LG         F      E     +    ++ 
Sbjct: 202 PIEWLGEQFIIEAEHMKKVNPAKYEHDYLGAVTGTGGEVFRNLTIREL---TDEEIKVFD 258

Query: 317 PLIMGCDIAGEGGDKTVVVFRR 338
            L  G D  G   D    V   
Sbjct: 259 RLKNGLDF-GYAADPLAYVLMH 279


>gi|148993445|ref|ZP_01822962.1| terminase large subunit [Streptococcus pneumoniae SP9-BS68]
 gi|147928000|gb|EDK79020.1| terminase large subunit [Streptococcus pneumoniae SP9-BS68]
          Length = 432

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 86/291 (29%), Gaps = 25/291 (8%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTI--FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
           Q + +  +     +       +   ++  +   RG  K+   A   +  +   P  +++ 
Sbjct: 9   QNDIVVDLPKTVGAGYGQFWRSRSLYRV-VKGSRGSKKSKTTALNYVIRLLKYPWANLLV 67

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           I       K + + +     ++L   H F+                   + I +    I 
Sbjct: 68  IRRYSNTNKQSTYTDFKWACNVLGVTHLFKFNES------------LPEITIKATGQKIL 115

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI-----INKSILGFFTELNPNRFWIMT 227
            R   +E   T +          + +EA           + +SI G     +  +   +T
Sbjct: 116 FRGLDDELKITSITVDVGSLCWAWFEEAYQIETEDKFSTVVESIRGSLDVPDFFKQITVT 175

Query: 228 SNTRRLNGWFYDIF---NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
            N      W   +F        D        +  E +D    +     Y  +   ARI  
Sbjct: 176 FNPWNERHWLKRVFFDEETSRADTFATTTTYKCNEWLDEVDIKRYEDLYHTNPRRARIVC 235

Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335
            G++          +  +++    E + D    L +G D  G   D T + 
Sbjct: 236 DGEW-GVAEGLIYENVTVKDFDKDELLRDSANKLCIGLDF-GFTHDPTALC 284


>gi|183603148|ref|ZP_02712947.2| phage terminase large subunit [Streptococcus pneumoniae SP195]
 gi|183572674|gb|EDT93202.1| phage terminase large subunit [Streptococcus pneumoniae SP195]
          Length = 434

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 86/291 (29%), Gaps = 25/291 (8%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTI--FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
           Q + +  +     +       +   ++  +   RG  K+   A   +  +   P  +++ 
Sbjct: 11  QNDIVVDLPKTVGAGYGQFWRSRSLYRV-VKGSRGSKKSKTTALNYVIRLLKYPWANLLV 69

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           I       K + + +     ++L   H F+                   + I +    I 
Sbjct: 70  IRRYSNTNKQSTYTDFKWACNVLGVTHLFKFNES------------LPEITIKATGQKIL 117

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI-----INKSILGFFTELNPNRFWIMT 227
            R   +E   T +          + +EA           + +SI G     +  +   +T
Sbjct: 118 FRGLDDELKITSITVDVGSLCWAWFEEAYQIETEDKFSTVVESIRGSLDVPDFFKQITVT 177

Query: 228 SNTRRLNGWFYDIF---NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
            N      W   +F        D        +  E +D    +     Y  +   ARI  
Sbjct: 178 FNPWNERHWLKRVFFDEETSRADTFATTTTYKCNEWLDEVDIKRYEDLYHTNPRRARIVC 237

Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335
            G++          +  +++    E + D    L +G D  G   D T + 
Sbjct: 238 DGEW-GVAEGLIYENVTVKDFDKDELLRDSANKLCIGLDF-GFTHDPTALC 286


>gi|321156947|emb|CBW38936.1| Phage terminase large subunit [Streptococcus phage V22]
          Length = 432

 Score = 55.0 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 86/291 (29%), Gaps = 25/291 (8%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTI--FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
           Q + +  +     +       +   ++  +   RG  K+   A   +  +   P  +++ 
Sbjct: 9   QSDIVIDLPKTVGAGYGQFWRSRNLYRV-VKGSRGSKKSKTTALNYVIRLLKYPWANLLV 67

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           I       K + + +     ++L   H F+                   + I +    I 
Sbjct: 68  IRRYSNTNKQSTYTDFKWACNVLGVTHLFKFNES------------LPEITIKATGQKIL 115

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI-----INKSILGFFTELNPNRFWIMT 227
            R   +E   T +          + +EA           + +SI G     +  +   +T
Sbjct: 116 FRGLDDELKITSITVDIGSLCWAWFEEAYQIETEDKFSTVVESIRGSLDVPDFFKQITVT 175

Query: 228 SNTRRLNGWFYDIF---NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
            N      W   +F        D        +  E +D    +     Y  +   ARI  
Sbjct: 176 FNPWNERHWLKRVFFDEETSRADTFATTTTYKCNEWLDEVDIKRYEDLYHTNPRRARIVC 235

Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335
            G++          +  +++    E + D    L +G D  G   D T + 
Sbjct: 236 DGEW-GVAEGLIYENVTVKDFDKDELLRDSANKLCIGLDF-GFTHDPTALC 284


>gi|229021160|ref|ZP_04177803.1| phage terminase, large subunit [Bacillus cereus AH1273]
 gi|229022065|ref|ZP_04178619.1| phage terminase, large subunit [Bacillus cereus AH1272]
 gi|228739217|gb|EEL89659.1| phage terminase, large subunit [Bacillus cereus AH1272]
 gi|228740120|gb|EEL90474.1| phage terminase, large subunit [Bacillus cereus AH1273]
          Length = 562

 Score = 55.0 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/278 (10%), Positives = 71/278 (25%), Gaps = 28/278 (10%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML--- 135
           KC +   R  GK+ L A ++L L+ T P  S       + +L + +  E+ K L      
Sbjct: 104 KCVLLIARKSGKSFLVALVILLLMLTEPEFSEFFSVAPDRELSSIIKKEIEKMLEKSHPS 163

Query: 136 ------PHRHWFEMQSLSLHPSGWYAELLEQSMGID----SKHYTITCRTYSEERPDTFV 185
                   +                         +     +        +Y  E  ++  
Sbjct: 164 ISSRFKTVQKETRCTLTKSKFVPLATSDNRMDGRLASAFVADEVGALKTSYPIEAMESSQ 223

Query: 186 GPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP----NRFWIMTSNTRRLNGWFYDIF 241
                    + +       + +   I      ++        + M      +  W  D  
Sbjct: 224 LNILNRLGILISTAYDTMHNPMVDQIEYAQKVMDGHITDETLFAMLYKPDNMKDWTSDEA 283

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV--ARIEILGQFPQQE-VNNFIP 298
            +              +        +       + S     + + L  F   +    ++ 
Sbjct: 284 LLQAN------PLAIELPENLDELKKKRAKAMEMPSSQTNFKTKHLNIFVDGDIAEVYVS 337

Query: 299 HNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
            + + +             + +G D++ +  D T +  
Sbjct: 338 TDDLRKGKISNYNW-KGRKVHIGVDLS-QSNDNTAIAM 373


>gi|38234395|ref|NP_940162.1| putative phage terminase protein [Corynebacterium diphtheriae NCTC
           13129]
 gi|38200658|emb|CAE50354.1| Putative phage terminase protein [Corynebacterium diphtheriae]
          Length = 485

 Score = 55.0 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/277 (13%), Positives = 68/277 (24%), Gaps = 42/277 (15%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           +P  WQ+ F   V            P      +S  R  GKT       +    T P   
Sbjct: 48  EPMPWQVLFHTIVGARNADGR----PRWPFIIVSVPRQSGKTDGVGAQAIHRTLTSPNGK 103

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I   A +  + ++  W E+   ++  P   +      +   +  +  +  Q         
Sbjct: 104 IWYTAQTGQKARDR-WLEMVASVNRSPFAAFARTLKTNGSEALKFEAINSQFRPH----- 157

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD----IINKSILGFFTELNPNRFWI 225
                      P T    H+      F DEA    D     + ++I          +  I
Sbjct: 158 -----------PPTADSLHSEQSDLNFIDEAWVFDDATAADLMQAITPTQATRPNRQTVI 206

Query: 226 MTSNTRRLNGWFYDIFNIPLE----------------DWKRYQIDTRTVEGIDSGFHEGI 269
           +++     + WF+ +                      D    +                 
Sbjct: 207 VSTMGDAGSTWFHGLVEKGRAGDPGIFLLEFGIADDVDPDDLEAVAAAHPAFGYTQDMEA 266

Query: 270 ISRYGLD-SDVARIEILGQFPQQEVNNFIPHNYIEEA 305
           +                G       N  IP    E+A
Sbjct: 267 LRAARASLGAAGFARGYGNRATGARNQLIPSRAYEQA 303


>gi|139439135|ref|ZP_01772587.1| Hypothetical protein COLAER_01597 [Collinsella aerofaciens ATCC
           25986]
 gi|133775482|gb|EBA39302.1| Hypothetical protein COLAER_01597 [Collinsella aerofaciens ATCC
           25986]
          Length = 455

 Score = 55.0 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/311 (13%), Positives = 70/311 (22%), Gaps = 51/311 (16%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           +P  WQ   +                          R  GK  +     ++ ++   G  
Sbjct: 2   EPIEWQSLVLSDWCACDAEGRPAYVTCGLDV----PRQNGKNAVIEIYEVFRLAVC-GWH 56

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I+  A+     K      V  +             +   HP         +    +   Y
Sbjct: 57  ILHTAHRVKTAKKAFNRLVRYF-------------TDKEHPELSCLVERIRRTNGEEAIY 103

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF-TELNPNRFWIMTS 228
                +                   V  DEA    D    +I+          R  I T 
Sbjct: 104 LTNGGSIKFSARTNGSARGFDDIQLVVFDEAQELTDSQYDAIMYTLAASATGERQIIYTG 163

Query: 229 NTRRLN--GWFYDIFN-------IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279
                +  G  +           IP  +W      T      D+ F + +   Y  +  +
Sbjct: 164 TPPNEDCPGTVFARTRAAILAGDIPSTEWCS--WATDECPRQDATFDDVVDLIYESNPSM 221

Query: 280 --------------------ARIEILGQF-PQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
                                  E LG F P   +   IP      A+     D      
Sbjct: 222 GIILSLDFTRTEFAGGSITGFAHERLGWFSPAAMLTRAIPRESWGAALIDAIGDRYRGKK 281

Query: 319 IMGCDIAGEGG 329
             G   + +G 
Sbjct: 282 AFGVKFSRDGS 292


>gi|229828943|ref|ZP_04455012.1| hypothetical protein GCWU000342_01028 [Shuttleworthia satelles DSM
           14600]
 gi|229792106|gb|EEP28220.1| hypothetical protein GCWU000342_01028 [Shuttleworthia satelles DSM
           14600]
          Length = 549

 Score = 55.0 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/281 (9%), Positives = 74/281 (26%), Gaps = 36/281 (12%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
            HF +   +Q   ++A       N +     +       GR  GKTTL + + L+++   
Sbjct: 65  GHFLKLELYQKAMLQAAYGFLDDNDHRRYQEVLNIV---GRKNGKTTLLSAIQLYMLIA- 120

Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
                          ++      ++ ++M+                 +            
Sbjct: 121 -DKEGAPECYQIATARDQAMKGFTECVNMVRQSKTIAKHVRKRQSDLY------------ 167

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFW 224
                     + +            +G  +  DE +   +  +   +    +  +    W
Sbjct: 168 ----CDVNMGFIKPLASNTNSLDGLNGHCIVIDELAAIKNRDVYDLMKQSMSSRSQPMLW 223

Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
            +T++       F   +          +   +    +   +       +           
Sbjct: 224 CITTSGFVRESIFDSQYEYAKG---VIEGTIKDERFLPIIYELDKRDEWNQP-------- 272

Query: 285 LGQFPQQEV--NNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
            G++ +            ++E  + +   DD + P ++  D
Sbjct: 273 -GKWVKANPGLGTIKSKEFLEGCVGKGKSDDTFLPTVLVKD 312


>gi|149021996|ref|ZP_01835958.1| terminase large subunit [Streptococcus pneumoniae SP23-BS72]
 gi|147929840|gb|EDK80829.1| terminase large subunit [Streptococcus pneumoniae SP23-BS72]
          Length = 432

 Score = 55.0 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 86/291 (29%), Gaps = 25/291 (8%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTI--FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
           Q + +  +     +       +   ++  +   RG  K+   A   +  +   P  +++ 
Sbjct: 9   QSDIVIDLPKTVGAGYGQFWRSRNLYRV-VKGSRGSKKSKTTALNYVIRLLKYPWGNLLV 67

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           I       K + + +     ++L   H F+                   + + +    I 
Sbjct: 68  IRRYSNTNKQSTYTDFKWACNVLGVTHLFKFNES------------LPEITVKATGQKIL 115

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI-----INKSILGFFTELNPNRFWIMT 227
            R   +E   T +          + +EA           + +SI G     +  +   +T
Sbjct: 116 FRGLDDELKITSITVDIGSLCWAWFEEAYQIETEDKFSTVVESIRGSLDVPDFFKQITVT 175

Query: 228 SNTRRLNGWFYDIF---NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
            N      W   +F        D        +  E +D    +     Y  +   ARI  
Sbjct: 176 FNPWNERHWLKRVFFDEETRRADTFATTTTYKCNEWLDEVDIKRYEDLYHTNPRRARIVC 235

Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335
            G++          +  +++    E + D    L +G D  G   D T + 
Sbjct: 236 DGEW-GVAEGLIYENVTVKDFNKDELLRDSANKLCIGLDF-GFTHDPTALC 284


>gi|319762383|ref|YP_004126320.1| terminase large subunit protein [Alicycliphilus denitrificans BC]
 gi|317116944|gb|ADU99432.1| putative terminase large subunit protein [Alicycliphilus
           denitrificans BC]
          Length = 535

 Score = 55.0 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/331 (12%), Positives = 83/331 (25%), Gaps = 43/331 (12%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + RL  + Q+LE+ L +          +K  V      G +G+       P+R Q  F++
Sbjct: 10  LNRLPDSAQELERCLTDPEWRLFSGCLYKIMVKGDSKDGQEGEAFSMPFVPNRAQRRFIK 69

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +                +  I   R +G TTL A + L             IA      
Sbjct: 70  RLWH--------------RNIILKARQLGFTTLIAILWLDHALFNADQRCGIIAQDREAA 115

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           +     +V      LP                   +   + +   +        +     
Sbjct: 116 EAIFRDKVKYAYQNLPEEIRERF--------PLARDSASELLFAHNNSSVRVATSMRSGT 167

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
                               +  PD   + + G    +      ++ S     NG FYD+
Sbjct: 168 IHRLHISEFGKI-------CAKFPDKAKEVMTGSIPAVPTTGILVIESTAEGANGEFYDL 220

Query: 241 FNIPL-----------EDWKRYQIDTRTVEGIDSGFHE-GIISRYGLDSDVARIEILGQF 288
                            D++ +               +  I        D    E+  Q 
Sbjct: 221 SKRSQALHYSHQKLTPRDYRFHFYAWWQEPNYRMDATQVSISREMHDYFDGIEQEMECQI 280

Query: 289 PQQEVNNFIPHNYIE--EAMSREAIDDLYAP 317
             ++   ++     +      R   +    P
Sbjct: 281 DPEQRAWYVATQQADFPGREERMWQEYPSTP 311


>gi|225855376|ref|YP_002736888.1| phage terminase, large subunit, pbsx family [Streptococcus
           pneumoniae JJA]
 gi|225724280|gb|ACO20133.1| phage terminase, large subunit, pbsx family [Streptococcus
           pneumoniae JJA]
          Length = 432

 Score = 55.0 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 86/291 (29%), Gaps = 25/291 (8%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTI--FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
           Q + +  +     +       +   ++  +   RG  K+   A   +  +   P  +++ 
Sbjct: 9   QSDIVIDLPKTVGAGYGQFWRSRNLYRV-VKGSRGSKKSKTTALNYVIRLLKYPWGNLLV 67

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           I       K + + +     ++L   H F+                   + + +    I 
Sbjct: 68  IRRYSNTNKQSTYTDFKWACNVLGVTHLFKFNES------------LPEITVKATGQKIL 115

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI-----INKSILGFFTELNPNRFWIMT 227
            R   +E   T +          + +EA           + +SI G     +  +   +T
Sbjct: 116 FRGLDDELKITSITVDIGSLCWAWFEEAYQIETEDKFSTVVESIRGSLDVPDFFKQITVT 175

Query: 228 SNTRRLNGWFYDIF---NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
            N      W   +F        D        +  E +D    +     Y  +   ARI  
Sbjct: 176 FNPWNERHWLKRVFFDEETRRADTFATTTTYKCNEWLDEVDIKRYEDLYHTNPRRARIVC 235

Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335
            G++          +  +++    E + D    L +G D  G   D T + 
Sbjct: 236 DGEW-GVAEGLIYENVTVKDFNKDELLQDSANKLCIGLDF-GFTHDPTALC 284


>gi|283478675|emb|CAY74591.1| putative terminase large subunit [Erwinia pyrifoliae DSM 12163]
          Length = 581

 Score = 55.0 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/318 (9%), Positives = 77/318 (24%), Gaps = 55/318 (17%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
            WQ   + ++               F+ + I +G+G GK+ L   + L+L+     P   
Sbjct: 89  PWQCFIVGSLF----GWKAEDGTRRFRMSYIESGKGSGKSPLAGGVGLYLLMADKEPRAE 144

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           +   A  + Q    L+ +    +   P                    + +   G++  + 
Sbjct: 145 VYAAATKKDQAM-ILFRDAVTMVDQSP---------------ALAKRITKSGTGLNVWNL 188

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                    +   +  G           DE           ++   T+        + +N
Sbjct: 189 AFLQTGSFFKPISSDDGQSGPRPHGALIDEVHEHKTNAVVEMMRAGTKGRRQALMFLITN 248

Query: 230 TR-RLNGWFYDIFNIPL---------------------------EDWKRYQIDTRTVEGI 261
           +        ++                                 ++    + +    +  
Sbjct: 249 SGHDKTSVCFEYHEYGRKVAAGDLEDDSFFSFICSLDEGDDPFKDETCWGKANPSLGQTF 308

Query: 262 DSGFHEG---IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
            + +                + R     Q+ +          ++      +  +      
Sbjct: 309 TAKYLREQVTQARGMPSKESIVRRLNFCQWVESADPWIDSDTWMNCEQDFDPDELAGEEC 368

Query: 319 IMGCDIAGEGGDKTVVVF 336
             G D++G   D T +  
Sbjct: 369 YGGLDLSGS-RDLTALAL 385


>gi|194302950|ref|YP_002014219.1| gp3 [Mycobacterium phage Boomer]
 gi|194152998|gb|ACF34065.1| gp3 [Mycobacterium phage Boomer]
          Length = 453

 Score = 55.0 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/326 (10%), Positives = 80/326 (24%), Gaps = 43/326 (13%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            RWQ +   A            +      +I+  R  GKT      ++ +  +RPG  ++
Sbjct: 6   DRWQEDIWYAALGLREDGTLACDVMGVTLSIA--RQAGKTWGIMVGLIAICLSRPGTLVV 63

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             ++ +     TL  +++  +     R                     + +   +    +
Sbjct: 64  WSSHHDRTSSETL-TKIAGIVEKPAIRPKMRP------MHPVVQSDDNRGVHFANGSRIL 116

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
                             +       DE     +     +L     ++            
Sbjct: 117 FGARAQGFGRG------FSEVDIQVYDECQNLKESALTDMLAAM-NVSEIGLAFFMGTPP 169

Query: 232 RLNGW---FYDIFNIPLEDW------KRYQIDTRT-VEGIDSGFHEGIISRYGLD----- 276
           R        +D F    +        + ++                 I +    D     
Sbjct: 170 RPQEVALGVHDAFKRRRDRALEQKKRRPFKGVYVEFAPESPDDVVADIDAPGFWDRLAEA 229

Query: 277 SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI-------MGCDIAGEGG 329
           +      +     ++ V N  P +   E        +  + ++       + CD+   G 
Sbjct: 230 NPSFGHRVGKSAIERLVENMSPEDVRREVFGIWDKTNEVSSVVPGDQWRSLCCDVDDLG- 288

Query: 330 DKTVVVF---RRGNIIEHIFDWSAKL 352
           D +       R G     +  WS   
Sbjct: 289 DVSAFGVSATRSG-WFWIVACWSGVD 313


>gi|167759141|ref|ZP_02431268.1| hypothetical protein CLOSCI_01488 [Clostridium scindens ATCC 35704]
 gi|167663259|gb|EDS07389.1| hypothetical protein CLOSCI_01488 [Clostridium scindens ATCC 35704]
          Length = 597

 Score = 55.0 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/317 (12%), Positives = 84/317 (26%), Gaps = 56/317 (17%)

Query: 69  NVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWL--ISTRPGMSIICIANSETQLKNTLW 125
                    F+ + +  GR  GK+ +N  +  +           I C A  + Q  N ++
Sbjct: 95  RTKEKGHRRFRTSYVQLGRQNGKSFINGILACYYGNFDGYKYGKIFCTATKQDQA-NIVF 153

Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185
            E+ K+++                     +E  +      +     T         DT  
Sbjct: 154 DEIVKFIN----------------SDEDLSEWFKVHEHNHTIDCLCTHSEIKALSGDT-K 196

Query: 186 GPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-- 242
                       DE  +   + + K + G   +L      ++T+    L    Y ++   
Sbjct: 197 SLDGHRAYLGIVDEYHAHKTNQMYKLLEGGIKKLKSALISVITTAGFDLKSPCYKLYEYC 256

Query: 243 --------------------------IPLEDW---KRYQIDTRTVEGIDSGFHEGIISRY 273
                                        E+W                            
Sbjct: 257 CNLLKGVFENDSQFVYIAQLDTADDLYKKENWIKANPILEYDEDALENLVPIANTARDMG 316

Query: 274 GLDSDVARIEILGQFPQQEVNNFIP--HNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDK 331
           G D     ++ L  + Q     +I     +   A  R   D   +   +G D++  GGD 
Sbjct: 317 GEDLRDFLVKQLNMWMQWSNALYIKDIKEWKRCAALRTLKDFRGSKCYVGVDLS-SGGDL 375

Query: 332 TVVVFRRGNIIEHIFDW 348
           T +      +++ +  +
Sbjct: 376 TSIAIVIPYMVDGVKKY 392


>gi|28377533|ref|NP_784425.1| prophage Lp1 protein 38 [Lactobacillus plantarum WCFS1]
 gi|28270365|emb|CAD63266.1| prophage Lp1 protein 38 [Lactobacillus plantarum WCFS1]
          Length = 428

 Score = 55.0 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/261 (13%), Positives = 78/261 (29%), Gaps = 19/261 (7%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
           ++  I   RG  K+   A  +++ +      +I+ +  +    K + + E  K ++    
Sbjct: 25  YRV-IKGSRGSKKSVTTAHNLIYRLVKYHWSNILVVRRNANTNKTSTFVECKKAINDFHL 83

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
             +F+                   +        I  R   +    T V         ++ 
Sbjct: 84  ERYFKYNES------------LPEITYLPTGQKIVFRGLDDPLKLTSVNVPTGELCWLWV 131

Query: 198 DEASGT-PDIINKSILGFFTELNPNRF--WIMTSNTRRLNGWF-YDIFNIPLEDWKRYQI 253
           +EA         ++++      +P  F    +T N    + W   + F+ P +D      
Sbjct: 132 EEAYEIESFSKLQTVIESLRGNDPQVFYQVTLTFNPWNEHHWLKREFFDQPRDDTFVRTT 191

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
             R  E +   + + + S Y  +   A+  + G++           N  +   +      
Sbjct: 192 TVRCNEFVSDEYKQRLYSLYQTNPRRAKTVVDGEW-GVAEGLVFEDNIEQIEFNAMDKIQ 250

Query: 314 LYAPLIMGCDIAGEGGDKTVV 334
                  G D  G   D    
Sbjct: 251 ECGQTGFGLD-YGFSNDPNAF 270


>gi|119357402|ref|YP_912046.1| hypothetical protein Cpha266_1601 [Chlorobium phaeobacteroides DSM
           266]
 gi|119354751|gb|ABL65622.1| protein of unknown function DUF264 [Chlorobium phaeobacteroides DSM
           266]
          Length = 414

 Score = 55.0 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 75/294 (25%), Gaps = 33/294 (11%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
            P   K  +  G G GKT + A   ++       +  + ++ S  Q + T+   + + L 
Sbjct: 20  LPNFLKVLV-GGYGCGKTHIGALRSIYDSYVNAPVPHLYVSPSYKQARKTVVISIRELLD 78

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
               R+ F   +     + W            +    I          D        +  
Sbjct: 79  AAGVRYRFNKTNHEFAIANW------------NGTIWIASG-------DEPDSLKGPNIG 119

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK--RY 251
           +   DE       +    L            I  + T     W +++       +     
Sbjct: 120 SAGIDEPFIQQKEVFDITLSRVRHPRAKHREIFLTGTPEQLNWGHEVSQNDEGRYDLGLV 179

Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY--IEEAMSRE 309
              T     +   F   +   Y  +       + G F    V     +    +    +  
Sbjct: 180 VGRTADNVHLPGQFVSMLERAYDENQRA--AYMNGLFVNLTVGRVYSYFDRSVHMGGAGL 237

Query: 310 AIDDLYAPLIMGCDIAGEGGDK-TVVVFR-RGNIIEHIFDW--SAKLIQETNQE 359
             D     ++ G D      D  T VV R  G+ +    +         E    
Sbjct: 238 GGDGADGEVVAGID---FNVDHLTAVVLRVWGDRVHCFDEMVLRGSTTYELADR 288


>gi|149004553|ref|ZP_01829252.1| terminase large subunit [Streptococcus pneumoniae SP14-BS69]
 gi|147757556|gb|EDK64580.1| terminase large subunit [Streptococcus pneumoniae SP14-BS69]
          Length = 420

 Score = 55.0 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 86/291 (29%), Gaps = 25/291 (8%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTI--FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
           Q + +  +     +       +   ++  +   RG  K+   A   +  +   P  +++ 
Sbjct: 9   QSDIVIDLPKTVGAGYGQFWRSRNLYRV-VKGSRGSKKSKTTALNYVIRLLKYPWANLLV 67

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           I       K + + +     ++L   H F+                   + + +    I 
Sbjct: 68  IRRYSNTNKQSTYTDFKWACNVLGVTHLFKFNES------------LPEITVKATGQKIL 115

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI-----INKSILGFFTELNPNRFWIMT 227
            R   +E   T +          + +EA           + +SI G     +  +   +T
Sbjct: 116 FRGLDDELKITSITVDVGSLCWAWFEEAYQIETEDKFSTVVESIRGSLDVPDFFKQITVT 175

Query: 228 SNTRRLNGWFYDIF---NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
            N      W   +F        D        +  E +D    +     Y  +   ARI  
Sbjct: 176 FNPWNERHWLKRVFFDEETSRADTFATTTTYKCNEWLDEVDIKRYEDLYHTNPRRARIVC 235

Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335
            G++          +  +++    E + D    L +G D  G   D T + 
Sbjct: 236 DGEW-GVAEGLIYENVTVKDFDKDELLRDSANKLCIGLDF-GFTHDPTALC 284


>gi|163737525|ref|ZP_02144942.1| terminase, large subunit [Phaeobacter gallaeciensis BS107]
 gi|161389051|gb|EDQ13403.1| terminase, large subunit [Phaeobacter gallaeciensis BS107]
          Length = 587

 Score = 54.6 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/330 (12%), Positives = 90/330 (27%), Gaps = 51/330 (15%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLI--STRPGMS 109
            WQ   +  +          +    F+ A +   R  GK+TL A + L+ +     PG  
Sbjct: 88  PWQAFMISQIGGW---RHMVTGLRRFRTAYVEVPRKNGKSTLLAGVGLYFLGPDGEPGAK 144

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           +   A S  Q +            ++      +   L         E   ++    +   
Sbjct: 145 VYSAAASTHQARIVF-----DAARVMAVTGEADGVGLDEVLGLTVEEHKIKTQDPAAVFQ 199

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPNRFWIMTS 228
            I  +T S++           +      DE        +  S+              +T+
Sbjct: 200 PIASQTKSKD---------GKNPHCAIVDELHEHDKRDVWDSMASALGAREQPLLIAITT 250

Query: 229 NTRRLNGWFYDIFNIPLEDWK-----------RYQIDTRTVEGIDSGFHEGIISRYGLDS 277
                 G  ++                      ++ D        + + +   S +   S
Sbjct: 251 AGYNTGGICFEQRKYLQSLLDGDRKNERYFGLIFEADEGDEPSDPATWAKANPSLHTAKS 310

Query: 278 DVARIE----------ILGQFPQQEVNNF--IPHNYIEEAMSREAIDD-------LYAPL 318
                +           +G+F ++ ++ +  +    I+    R + D             
Sbjct: 311 LEYMQDEWEKAAASPAAMGEFLRKHLDIWTSVGAAAIDMEAWRASEDASMTLAQYRGHKA 370

Query: 319 IMGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348
            +G D+A      +VV       +  +F W
Sbjct: 371 YIGVDLATRRDPASVVALIPDGKLYRLFSW 400


>gi|257792356|ref|YP_003182962.1| phage terminase, large subunit, PBSX family [Eggerthella lenta DSM
           2243]
 gi|257476253|gb|ACV56573.1| phage terminase, large subunit, PBSX family [Eggerthella lenta DSM
           2243]
          Length = 559

 Score = 54.6 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 80/293 (27%), Gaps = 28/293 (9%)

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
             C  +   +   I    +  GRG  K++  +  ++  I   P    + +   +T +++ 
Sbjct: 140 DFCKPHRMIARREITDVWLGGGRGSMKSSYASLEVVNYIEQNPEQHALVLMKYKTAIRDA 199

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
            +A+V   + ML     +EM   +L             +   S    I  R     +   
Sbjct: 200 AYAQVVWAIKMLGLEDEYEMPDSTLR------------IKKRSTGQLIIFRGCDNAQKIK 247

Query: 184 FVGPHNTHGMAVFNDEASGTP-DIINKSILGFFTELNPNRFWIMTSNTRRL-NGWFYDIF 241
            +     H    + +EA         + +    T    +   + T N  R  + W     
Sbjct: 248 SIKVPFGHIGVAWYEEADMFKGMAEIRKVNQSLTRGGNDCIRLYTYNPPRSVHSWINVEM 307

Query: 242 NIPLE-DWKRYQIDTRTVE--GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIP 298
               +     +  +        +   FH        +D      E +G+     +  F P
Sbjct: 308 QRRRDAGEPVFTSNYLNAPREWLGDQFHADAEELKRIDLKAYLHEYMGEAVGMGLEVFDP 367

Query: 299 HNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
              +      +     +  L  G D                     + +W   
Sbjct: 368 EKVV-FREITDEEIAAFDNLKAGQDFGWY----------PDPWAFTLSEWRQN 409


>gi|254884963|ref|ZP_05257673.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254837756|gb|EET18065.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 566

 Score = 54.6 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 62/225 (27%), Gaps = 19/225 (8%)

Query: 80  CAISAGRGIGKTTLN----AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
             + AGRG+ K+T+     ++  +W +   PG  +  +AN+   LK+ +   V K   M+
Sbjct: 36  LVVIAGRGMSKSTVIQSRRSYRCIWEM---PGAPLAFVANTYANLKDNIMPAVQKGWEMM 92

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
                         P  W A+         + +             D          + +
Sbjct: 93  GLYEGVHYIRGKEPPVSWKAKCSIIVNDYRNCYSFWNGSVIFMGSLDNPSLLAGKSVVHL 152

Query: 196 FNDEASGTPDIINKSILGFFTE-----LNPNRFWIMTSN---TRRLNGWFYDIFNIP--- 244
           F DE+    D      +             + F  +T          G +   F      
Sbjct: 153 FYDESKYDKDEKVNRAMPVLRGDSLTYGASHLFLGLTITTDMPDVNEGEYDWYFRYAPNM 212

Query: 245 -LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
             +             G+               S +AR+E    +
Sbjct: 213 DPDRIILIVQAAFERNGLLLKQLREQKKDNPSHSVLARLERKIDY 257


>gi|118590957|ref|ZP_01548357.1| hypothetical protein SIAM614_19891 [Stappia aggregata IAM 12614]
 gi|118436479|gb|EAV43120.1| hypothetical protein SIAM614_19891 [Stappia aggregata IAM 12614]
          Length = 526

 Score = 54.6 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/336 (12%), Positives = 73/336 (21%), Gaps = 85/336 (25%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKT L A + L+         +     S   LK                       +L
Sbjct: 64  GGGKTDLIAGLALFAHH-----KVAIFRQSLKSLKGLTERM----------------NAL 102

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                               +             P                DE +     
Sbjct: 103 MRQAGMGKISGNPPRWTGPDERLIEFGHL---GLPGAEEDWQGRDHDLKAFDEGAQMDPR 159

Query: 207 --INKSILGFFTELNPNRFWIMTSNTR--RLNGWFYDIFNIPLE---------------- 246
             I        T        ++ +N        +  D F   L+                
Sbjct: 160 KIIFVLGWLRTTRKGQRCRGLIATNPPLGGQGDYLSDWFAPWLDPLHPLYGKVQPGEMLW 219

Query: 247 -----DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN------ 295
                +    +              EG I      + +       +F   + +       
Sbjct: 220 AVFIDEGDAIRTVWVDGPE--PVEIEGEIRTPKSRTFIPARRQDNRFLGTDYDAQLDQMP 277

Query: 296 ----------------------FIPHNYIEEAMSR-EAIDDLYAP-LIMGCDIAGEGGDK 331
                                  IP ++++ A  R +   D   P  ++  D+A  G D+
Sbjct: 278 EPMRTALKTGDFLAARQDHEWQVIPSDWVDLAFERYDQGIDRDEPMTVLAVDVAQGGKDR 337

Query: 332 TVVVFRRGNIIEHIFDWSAKLIQETNQEGCPVGSSI 367
           TV+    G   E          ++    G  VGS I
Sbjct: 338 TVLQPLHGRRFETNIVRKGTDTKD----GADVGSLI 369


>gi|149882818|ref|YP_001294797.1| probable terminase [Microbacterium phage Min1]
 gi|148763449|gb|ABR10467.1| probable terminase [Microbacterium phage Min1]
          Length = 530

 Score = 54.6 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/316 (12%), Positives = 78/316 (24%), Gaps = 53/316 (16%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM---- 108
            WQ   +  +                K  +  GR  GKT + A +  + +    G     
Sbjct: 43  PWQKWLLIHMLELDAFGRLRF----RKALVIVGRQNGKTLIAAVLAAYWLYVDAGRWPDQ 98

Query: 109 -----SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
                 I+  A  +  +    W +V +W          + +           +       
Sbjct: 99  LPEQDFIVVGAAQKLDIAMKPWRQVRRW------GAPDDPKVGIARDRVPDLQAFTYPPR 152

Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNR 222
             +    +     +   P TF G        +  DE           +I         + 
Sbjct: 153 TTNGETELRTHGGAAYLPRTFEGARGQSAARLILDELREQYDYEGWSAIEKS-ANAMFDS 211

Query: 223 FWIMTSNTRRLNGWFYDIF----NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278
             +  SN                +  ++D +            D+   +         S 
Sbjct: 212 LLVAFSNAGTKRSRVLRDVRQIGHEGVDDRETQWFIAEWSAEPDASLDDERAFAQANPSA 271

Query: 279 VA----------------------RIEILGQFPQQEVNNFIPHNYIEEAMSREA-----I 311
                                   RIE+LGQ+   +V+NFI     +    R+       
Sbjct: 272 GYLAGMTIAGLMRAAAEAKEKNVERIEVLGQWVTAKVDNFIDSEEWKSRH-RDVASIFAR 330

Query: 312 DDLYAPLIMGCDIAGE 327
               A  +   D++ +
Sbjct: 331 IPNGARTVWAIDMSHD 346


>gi|325530303|sp|Q66632|TRM3_EHV2 RecName: Full=Tripartite terminase subunit UL15 homolog; AltName:
           Full=DNA-packaging protein 29; AltName: Full=Terminase
           large subunit
          Length = 686

 Score = 54.6 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 53/175 (30%), Gaps = 16/175 (9%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GKT +   ++  L+++   + +  +A+ +    +     ++      P ++ +   
Sbjct: 220 PRRHGKTWIVVAIISMLLTSVENIHVGYVAHQKHVANSVFAEIINTIYRWFPAKNVYIK- 278

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                       +        S     TC                     ++ DEA+   
Sbjct: 279 ------KENGTIMYTNENRRPSTLMCATCF--------NKNSIRGQTFNLLYVDEANFIK 324

Query: 205 DIINKSILGFFTELNPNRFWIMTSN-TRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
                SILGF  + +    +I + N + +   + Y++ N   +            
Sbjct: 325 KDSLPSILGFMLQKDAKIIFISSVNSSDQTTSFLYNLKNAKEKMLNVVNYVCPQH 379


>gi|225574768|ref|ZP_03783378.1| hypothetical protein RUMHYD_02845 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037968|gb|EEG48214.1| hypothetical protein RUMHYD_02845 [Blautia hydrogenotrophica DSM
           10507]
          Length = 428

 Score = 54.6 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 88/255 (34%), Gaps = 21/255 (8%)

Query: 79  KCAISAGR-GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS-KWLSMLP 136
           +  +  G  G GK+   A   L  +    G ++ICI  S+   +++ +AE++     +  
Sbjct: 20  RYIVMKGSAGSGKSVDTAQNYLLRLMQDKGRNLICIRKSDITNRDSTYAELTGAAYRIFG 79

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA-- 194
            +            S  +           + +  I      E++ +         G    
Sbjct: 80  DQVDRYWNIKQSPLSLTFRP---------NGNQIIFRGVNDEKQREKLKSITFQRGKLTD 130

Query: 195 VFNDEASGTPDIINKSILGFFTE---LNPNRFWIMTSNTRRLNGWFYD-IFNIPLEDWKR 250
           V+ +EA+       + I          +      MT N    N W     F+ P  +   
Sbjct: 131 VWIEEATEITQADFEIIDDRLRGELPPDQFYQIRMTFNPVNKNHWIKKVFFDTPDSNVLT 190

Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
           +         ID+ +H  +  R  +D +  +I  LG +   EV   I HN+  E +S+  
Sbjct: 191 HHSTYLDNRFIDAAYHARMARRKEVDPEGYQIYGLGNW--GEVGGLILHNWAVENISQNL 248

Query: 311 IDDLYAPLIMGCDIA 325
             D Y  + +G D  
Sbjct: 249 --DDYDDIAIGQDFG 261


>gi|117530289|ref|YP_851132.1| terminase [Microcystis phage Ma-LMM01]
 gi|117165901|dbj|BAF36209.1| terminase [Microcystis phage Ma-LMM01]
          Length = 592

 Score = 54.2 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/305 (13%), Positives = 88/305 (28%), Gaps = 53/305 (17%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML---------------WLI 102
            ++       +        +    +  GR  GK+ L +  +L               + +
Sbjct: 70  ILQRWAEQDVTTWVPDRSYV-NMVLECGRRGGKSVLASICVLYEFYCLINLDNPAKHYGL 128

Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
            +   ++I  IA S  Q+  TL+  +  + S                 + +   +    +
Sbjct: 129 LSGSPIAIFVIARSGAQVNETLFGAIRGYASQ---------------SAYFKGLVNSGQI 173

Query: 163 GIDSKHYTITCR-TYSEERPDTFVGPHNTHGMAVFNDEAS---------GTPDIINKSIL 212
            I ++      +      +              +  DEA+            D I  ++ 
Sbjct: 174 EILTQEIRCQAKNIAIYAKHTNSQSLVGYSLKMLVLDEAARFEYNELGESKADDIWSNVA 233

Query: 213 GFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED-----WKRYQIDTRTVEGIDSGFHE 267
              +        I  S+      +  +++ +   D     ++    D      +   +  
Sbjct: 234 KGLSTFGNKGKKIAISSAWSEGDYIQNLYKVATRDPRMVAFRLRTWDINLRPEVS-EYSL 292

Query: 268 GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE 327
                Y  D   A +E  G        +F    YIEEA+   +  D ++   +  DI   
Sbjct: 293 KNSEDYIRDPVTAALEYEGIR-SSMHGSFFQKEYIEEAVKGLSCLDAHS---IPLDI--T 346

Query: 328 GGDKT 332
            GD T
Sbjct: 347 NGDDT 351


>gi|94694833|gb|ABF47063.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
           5]
          Length = 674

 Score = 54.2 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 52/175 (29%), Gaps = 18/175 (10%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GKT     ++ +L+    G+SI  +A+ +      L     +              
Sbjct: 213 PRRHGKTWFIIPIISFLLKHMIGISICYVAHQKHVSHFVLQEVEFRCRHT---------- 262

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                   +  E  +  + ID +    T    S    ++       +   +  DEA    
Sbjct: 263 ----FARDYVVENKDNVISIDHRGAKSTALFASCYDTNS---IRGQNFHLLLVDEAHFIK 315

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTV 258
                +ILGF  +      +I ++NT      F   + N P +            
Sbjct: 316 KEAFNTILGFLAQNTTKIIFISSTNTTSDATCFLTRLNNAPFDMLNVVSYVCEEH 370


>gi|325281231|ref|YP_004253773.1| hypothetical protein Odosp_2613 [Odoribacter splanchnicus DSM
           20712]
 gi|324313040|gb|ADY33593.1| hypothetical protein Odosp_2613 [Odoribacter splanchnicus DSM
           20712]
          Length = 572

 Score = 54.2 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 51/205 (24%), Gaps = 19/205 (9%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
           GRG GK+   AW +  +  T P         +  QL         K L  + ++     +
Sbjct: 28  GRGTGKSAGIAWDINLINRTMPRALTAVTGQTFGQLLTRTLPSTFKLLESMGYKMHVSAK 87

Query: 145 S-----LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                 ++  P   + +  E+ M  D+               D               DE
Sbjct: 88  DPGNYVINRRPPDHFLQPYEKVMKFDNFISFSNGNGLLLLSQDRAGSARGASVDYEILDE 147

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
           A                  N               G F      P+     +   +    
Sbjct: 148 ALTINKQRYDEETSPTNRGN--------------EGIFGPHSPQPIPWHHGFHYSSSMPY 193

Query: 260 GIDSGFHEGIISRYGLDSDVARIEI 284
             +  +   I + Y  +  +   EI
Sbjct: 194 TAEQKWLLDIGNYYEKERGIRLFEI 218


>gi|258652181|ref|YP_003201337.1| TrwC relaxase [Nakamurella multipartita DSM 44233]
 gi|258555406|gb|ACV78348.1| TrwC relaxase [Nakamurella multipartita DSM 44233]
          Length = 1231

 Score = 54.2 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/335 (12%), Positives = 82/335 (24%), Gaps = 38/335 (11%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR---------GIGKTTLNAWM-MLW 100
           P R +    + +    H+             +++GR         G GKTT  A +  +W
Sbjct: 508 PDRARRVAGQDLPGRDHALAAEDQRPAAVQIVTSGRVVDVLVGPAGTGKTTTMAGVRAIW 567

Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
                PG +++ +A S       L A+V             + Q                
Sbjct: 568 EAEYGPG-TVVGLAPS-AMAAQVLAADVGIVTDNTAQWIAQQDQQTRREHRIRLLTDAIT 625

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220
           +    ++   +  R         +       G  +  DEA                    
Sbjct: 626 TPENPNRIQGL--RAARGRVQGEYDQWRLRPGQLLIVDEAGMC--GTFTLARLAGQAAKA 681

Query: 221 NRFWIMTSNT--------RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISR 272
               ++  +             G        P    +  +                   R
Sbjct: 682 GAKLLLVGDPCQLSPVETGGAFGLLCARHPDPATLTQVRRFTDPDGTRRAWEEQAADRLR 741

Query: 273 YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA--PLIMGCDIAGEGGD 330
            G  + +A  +  G+    + +        + A +    D       +++  D      D
Sbjct: 742 SGDSTALAEYDAHGRVRSGDQDQ-----MADNAYTAWLSDTHDGLTSVLIAAD-----ND 791

Query: 331 KTVVVFRRGNIIEHIFDWSAKLIQET-NQEGCPVG 364
            TVV   +    + I             + G  VG
Sbjct: 792 -TVVELNQRARTDLISTGQVDNTATAPVRNGLSVG 825


>gi|29566316|ref|NP_817883.1| gp32 [Mycobacterium phage Corndog]
 gi|29425041|gb|AAN01964.1| gp32 [Mycobacterium phage Corndog]
          Length = 503

 Score = 54.2 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/296 (12%), Positives = 75/296 (25%), Gaps = 44/296 (14%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            RWQ      +  +    V       F  +I   R  GKT     ++  L    PG+  I
Sbjct: 74  DRWQDGIAGLLLAYRPDGVLAHTVGGFGVSI--PRQCGKTHTLTAVLFGLCVEYPGVLAI 131

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             ++       T  A           + + + + ++           ++++   +    +
Sbjct: 132 WTSHHVKTNTETFQA----------VQAYAKRERVAPFIRKVTLGSGDEAVEFANGSRIL 181

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
                                  + +DEA        + +L      +     I      
Sbjct: 182 FGARERGFGRGIP------GVDVLMSDEAQILTQRAMQDMLATLNT-SRLGLHIYVGTPP 234

Query: 232 RLNGWFYDIFNIPLE-------DWKRYQIDTRTVEGIDS--GFHEG-------------I 269
           +          +  E       D    +        +D    +                 
Sbjct: 235 KPTDNSEMFSVMRREAETGEATDIVWIECGAEDTGDLDDIEQWMNANPSCPHRTPVVSIQ 294

Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
             R  LD D  R E LG +   E ++F    + +     +   D      +  D++
Sbjct: 295 RLRRRLDDDGFRREALGIWDASESSSFDLAAWSDLG---DRGVDAPTRAALVLDMS 347


>gi|192289100|ref|YP_001989705.1| hypothetical protein Rpal_0670 [Rhodopseudomonas palustris TIE-1]
 gi|192282849|gb|ACE99229.1| protein of unknown function DUF264 [Rhodopseudomonas palustris
           TIE-1]
          Length = 441

 Score = 54.2 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 83/273 (30%), Gaps = 29/273 (10%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLIS----TRPGMSIICIANSETQLKNTLWAEVSKW 131
           + FK  + A R  GKT      +                + ++  E Q K  +   + + 
Sbjct: 20  SRFKLGMFA-RQTGKTFTTTLEITDDCFEAAVQSRRERWVILSRGERQAKEAMDEGIKRH 78

Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
                    F+ Q           + LE ++   S+   +         P          
Sbjct: 79  CQAYQLG--FDAQEFDWQGQAGSYKALEVTLPHGSRITAL---------PANPDTARGFS 127

Query: 192 GMAVFNDEASG--TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW- 248
              VF DE +       I K++    +  +  R    TS     +  FY++     + W 
Sbjct: 128 -SNVFLDEFAFHKDSREIWKALFPVISAGHNLRV---TSTGNGKDNKFYELATGKDDVWS 183

Query: 249 KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI---EEA 305
           + +    + VE       + + +    D D    E   ++  +    ++ ++ I   E+ 
Sbjct: 184 RHFVDIYKAVEDGLPRNIDELKAGINDD-DAWAQEYELKWLDEAS-AWLSYDLITACEDP 241

Query: 306 MSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
            + +       P  +G DI     D  V+    
Sbjct: 242 RAGDPSGYRNNPCFVGRDIGRR-NDLHVIWVWE 273


>gi|312872322|ref|ZP_07732392.1| putative phage terminase, large subunit [Lactobacillus iners LEAF
           2062A-h1]
 gi|311092145|gb|EFQ50519.1| putative phage terminase, large subunit [Lactobacillus iners LEAF
           2062A-h1]
          Length = 461

 Score = 54.2 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/298 (13%), Positives = 71/298 (23%), Gaps = 49/298 (16%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +WQ + ++ +       +       +       R  GK  L      W +    G  I+
Sbjct: 37  QQWQKDLLKDIMAVNDDGLWTHTKFGYSL----PRRNGKNELVVMREFWGLKN--GEEIM 90

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A+  +          S W  +       +++  S+   G     LE    +  +  T 
Sbjct: 91  HTAHRISASH-------SAWEKLCYVLDKAKIEYRSIRAKGQELIELEDGGRVQFRTRTS 143

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
                                  +  DEA    D    S+    +  +  +  I+     
Sbjct: 144 NGGL-------------GEGVDLMIIDEAQEYTDDQESSLKYVVSSSHNPQT-ILLGTPP 189

Query: 232 R---------------------LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGII 270
                                  NGW         +                      I 
Sbjct: 190 TAVSAGTVFPNFRKAVLNGDKPDNGWAEWGVTEKKDVHDVESWYLTNPSLGTIFTERSIR 249

Query: 271 SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEG 328
              G D+D   I+ LG +      + I     E    +     L   L +G     +G
Sbjct: 250 DEIGPDTDDFNIQRLGLWISYNQKSAISSQDWETLQVKRL-PKLVGKLYVGIKFGNDG 306


>gi|225870209|ref|YP_002746156.1| phage terminase, large subunit [Streptococcus equi subsp. equi
           4047]
 gi|225699613|emb|CAW93266.1| putative phage terminase, large subunit [Streptococcus equi subsp.
           equi 4047]
          Length = 584

 Score = 54.2 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 53/358 (14%), Positives = 105/358 (29%), Gaps = 38/358 (10%)

Query: 3   RLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAV 62
           R ++  +K++ +  + +   +  +    F+    P    GKP         +Q   +  +
Sbjct: 42  RHLNDLKKIDDDNFKFIYLPKKAIDPIIFIELL-PDVKTGKPYPLAM----FQKFIIGNL 96

Query: 63  DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW-LISTRPGM---SIICIANSET 118
                   ++S     K  IS  R  GKT L A ++L+  +          + C AN  T
Sbjct: 97  Y-GWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEFLFGHNPSMSRQLFCTANDRT 155

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
           Q K   W    K LS L  +     ++  +          E  +   S+           
Sbjct: 156 QAK-IAWDMAKKQLSSLRAKDADVRKATKIVRDELKNLHDESYIRALSRDTGAVDGFEPY 214

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL----- 233
                      T+ M    +   G  D     I+     ++ N                 
Sbjct: 215 VGVLDEFAASKTNEMLELLESGQGQLDNPFILIIST-AGMDLNVPMHTIEYPYITKILDE 273

Query: 234 ----NGWFYDIFNIPLEDWKRYQIDT-RTVEGIDSGFHEGIISRYGLDSDVARIEILGQ- 287
               +G+F  +     E   + + +  ++   ++       +  Y        +E  G+ 
Sbjct: 274 EIVDDGYFGYVAEQDNEGEIKDESNWIKSNPILEVEALHDKLMDYLRTRRRVSLE-TGEI 332

Query: 288 ----------FPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIM-GCDIAGEGGDKTVV 334
                     + Q    ++I     E A  R    D +   +  G D+     D   +
Sbjct: 333 NKVLIKNFNMWRQSSEESYIDKQSWELA--RIDKPDTHKRRVWLGVDVGRV-SDLFAI 387


>gi|228987452|ref|ZP_04147571.1| Prophage LambdaBa02, terminase, large subunit [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228772184|gb|EEM20631.1| Prophage LambdaBa02, terminase, large subunit [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 562

 Score = 54.2 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/323 (11%), Positives = 82/323 (25%), Gaps = 38/323 (11%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
             WQ   + ++    H +            I  GR  GKTT+ + +  + ++    PG  
Sbjct: 80  QPWQHFVIGSLYGWIHKDTGYRRFREGLIFI--GRKNGKTTMISGLSNYAVAKDNEPGAR 137

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK-- 167
           +  +AN++ Q    L+ E    +   P       ++            +E       K  
Sbjct: 138 VYVLANTKQQAGE-LFDESRAMVQKSPLLRKHLRENQKGIFHDKTHSKIEPRASDSKKLD 196

Query: 168 ---------HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--------KS 210
                          + +                M V+   A    +             
Sbjct: 197 GLNTHLGIFDEIHEFKNFKLINVIKKSRGARKQPMIVYITTAGYQLEGPLVQYYEIATDV 256

Query: 211 ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGII 270
           + G   +     F     N   +      I   P          +  +  +   ++    
Sbjct: 257 LEGVIDQDRKFYFMAEMDNVDEIENPELWIKANPN------MGVSLDLPSLIDDWNTDKH 310

Query: 271 SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLIMGCDIAGEGG 329
           +    +  + +      F   +  +F+    ++      +         + G D++    
Sbjct: 311 TDAEKNDWITKQF--NIFVDNDEMSFVGIEILKRNEGVIDIKGLAGKECVAGYDLSAT-E 367

Query: 330 DKTVVV----FRRGNIIEHIFDW 348
           D T          GN+      W
Sbjct: 368 DFTSACLEFPLDDGNVFVLSHSW 390


>gi|307319529|ref|ZP_07598956.1| protein of unknown function DUF264 [Sinorhizobium meliloti AK83]
 gi|306894901|gb|EFN25660.1| protein of unknown function DUF264 [Sinorhizobium meliloti AK83]
          Length = 419

 Score = 54.2 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/285 (10%), Positives = 76/285 (26%), Gaps = 54/285 (18%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE-VSKWLSMLPHRHW 140
           +  G   GKT +    ++      PG   +         K ++W++ + K L++      
Sbjct: 2   LRGGSRSGKTFVLCRALIQRAINAPGSRHVIFRFRFNHAKTSVWSDTLPKVLALCFPSVR 61

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
                   +            + + +           +ER +            ++ +E+
Sbjct: 62  VRFDKTDFY------------VELPNGSQIWIAGLDDKERVEK---ILGQEYATLYFNES 106

Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTS--------------NTRRLNGWFYDIFN---- 242
           S  P    ++ +    +       I  +              N      W + +F     
Sbjct: 107 SQIPWASVETAMSRLAQKCELAPAIAAATGRRYLALKAYFDCNPPSKLHWSFQMFRAKMK 166

Query: 243 -------IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL-GQFPQQEVN 294
                     ED+   Q++           +  +++     S   R+    G++  +   
Sbjct: 167 PGTKEKLAKPEDYAEMQVNPADNSENLPPEYFEVLASM---SAAKRLRFEAGEWASEVSG 223

Query: 295 NFIPHNYIEEAMS---------REAIDDLYAPLIMGCDIAGEGGD 330
                   +             R A       +++  D +G  GD
Sbjct: 224 ALWALEDRKAPDGKLMPGIDSLRVASAPEMRRIVVSVDPSGTRGD 268


>gi|172041092|ref|YP_001800806.1| hypothetical protein cur_1412 [Corynebacterium urealyticum DSM
           7109]
 gi|171852396|emb|CAQ05372.1| hypothetical protein cu1412 [Corynebacterium urealyticum DSM 7109]
          Length = 480

 Score = 54.2 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/325 (13%), Positives = 79/325 (24%), Gaps = 47/325 (14%)

Query: 27  SFKNFVMRFFPWGIKGKPLEHFSQ--PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISA 84
           S+  F             L       P  +Q   +E+           S+    +  +S 
Sbjct: 13  SYSFFPTITASDATDAIELSEAYGLTPDPFQRFVLESWKARRADGKLASS----RVGLSV 68

Query: 85  GRGIGKT-TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            R  GK   L A  +  ++    G  ++  A+     +   +  ++ +     +      
Sbjct: 69  PRQNGKNGALEASELFDILVL--GRKVLHTAHETKTSQQA-FRRLASFFRPEVNPDLARQ 125

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
                  +G  A +L      +        RT +                 +  DEA   
Sbjct: 126 VEQIRQVNGQEAIVLR-----NGGEIRFIARTKNSG--------RGFTADTLVLDEAQEL 172

Query: 204 PDIINKSILGFFTEL-NPNRFWIMTSNTRRLNGWFY-----DIFNIPLEDWKRYQIDTRT 257
                 ++L   +     +   I                          D +   I+   
Sbjct: 173 NMEALGALLPAISSGPAGDPQQIYLGTPPGPTNDGEIFTKLRNDGHEATDPRLSWIEWSA 232

Query: 258 VEGIDSGFHEGII-----------------SRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
             G D    E                     R  LD +    E LG +  +E    IP  
Sbjct: 233 DRGCDLDDTEQWAQANPALGTRLMWDVVYDERAALDDETFARERLGMWSTEESARVIPQA 292

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIA 325
             E         D    + +  DI+
Sbjct: 293 DWEACAEPNMR-DAGGEVAIAVDIS 316


>gi|239621431|ref|ZP_04664462.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239515892|gb|EEQ55759.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 536

 Score = 54.2 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/323 (10%), Positives = 70/323 (21%), Gaps = 62/323 (19%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR------- 105
            WQ   +                   K  +   R  GKTTL   +  W +          
Sbjct: 55  PWQQWLLVHALELLEDGSYRF----RKVIVLVARQNGKTTLMGVLAAWWLFVDSNKHPDR 110

Query: 106 -PGMSIICI-ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
            P +  + + A          + +V +W +  P                     + Q   
Sbjct: 111 VPPVKFLVVGAAQTLDNAKGPYNQVKEWCNPAP------ATDEEEDLVIPDLAAMTQKFV 164

Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFF------- 215
             +    I  R+ +                 V  DE      D    ++           
Sbjct: 165 NTNGEEAIITRSKARYIVRADKNIRAKSAARVVFDELREQHTDDGWNAVSQTTKAVWSSQ 224

Query: 216 ---------------------------------TELNPNRFWIMTSNTRRLNGWFYDIFN 242
                                             +        ++       G+F     
Sbjct: 225 LWGISNAGDYRSVALRKQVDKGRKLVDEWTRLSADGGDPADVFLSGEQDGSFGYFEWSAP 284

Query: 243 --IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
              P++D    +    ++               G+     R E+L Q+   ++  FI   
Sbjct: 285 DKCPVDDADAIRQANPSLGYGPMTVMSVRSDIDGMTEAAFRTEVLCQWVTADIIPFINPK 344

Query: 301 YIEEAMSREAIDDLYAPLIMGCD 323
                +   +       +++  D
Sbjct: 345 MWAGGIDSRSTIPNENRVVLSVD 367


>gi|294677863|ref|YP_003578478.1| phage terminase large subunit [Rhodobacter capsulatus SB 1003]
 gi|294476683|gb|ADE86071.1| phage terminase, large subunit [Rhodobacter capsulatus SB 1003]
          Length = 537

 Score = 53.8 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/320 (12%), Positives = 85/320 (26%), Gaps = 51/320 (15%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS--TRPGMSI 110
            WQ   +  +     +        +F       RG  KT+L A + L  +    R     
Sbjct: 50  PWQERIVRRIYGPRDAQGARVVKMVFLMI---PRGNRKTSLAAALALLHLLGPERVPAGQ 106

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           I  A S+ +     + E ++ +     +         L+ +    + ++ +         
Sbjct: 107 IIFAASDREQAGIGFREAAEIIR----QDRRLEAVTRLYDAHNAPKAIKSTRDG------ 156

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMTSN 229
               +  +         H T    V  DE        + +++     +       I T+ 
Sbjct: 157 ----SALKAVSSDGRAQHGTTPTFVLADEIHVWQGRELWEALQSGMAKRAGGLTVIATTA 212

Query: 230 TRRLNGWFYDIFNIPLE----------------------DWKRYQIDTRTVEGIDSGF-- 265
            R   G   +++                           DW+   +  R   G+  GF  
Sbjct: 213 GRGNEGLAAELYAYARGVALGQIVNPEFLPILFEPDPGADWEDEALWHRVNPGLAHGFPD 272

Query: 266 ------HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD-LYAPL 318
                           +        L ++     +     +  +  +  +  +D    P 
Sbjct: 273 LDGLRSLARKAKDSPGERYSFEQFNLNRWLGNSRDPLFDFDTYDARVFDDDEEDLEQLPC 332

Query: 319 IMGCDIAGEGGDKTVVVFRR 338
            +G D++  G    VV    
Sbjct: 333 WLGVDLSRSGDLTAVVAAFH 352


>gi|302336014|ref|YP_003801221.1| Terminase [Olsenella uli DSM 7084]
 gi|301319854|gb|ADK68341.1| Terminase [Olsenella uli DSM 7084]
          Length = 520

 Score = 53.8 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/325 (11%), Positives = 67/325 (20%), Gaps = 57/325 (17%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             WQ   +            + +           R  GKT +   + L+ +       +I
Sbjct: 43  RPWQRWLLIHALEVVGDFGGDWHLRFSTVLTLVARQNGKTAVIGVVTLYWLYMLHAALVI 102

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +A   T+  +T                   +           AEL+    G   +   +
Sbjct: 103 GMAQDLTRSGDT------------WDAAVAMVDDTPS----LRAELVRPKRGNSGRDLVL 146

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNRFWI----- 225
           T R +   +P T           V  DE           ++            W      
Sbjct: 147 THRRHYVTKPPTRGAGRGPSAQLVIMDEMREQQSWDAWDAMADTTLTQENGIIWCASNAG 206

Query: 226 ----------------MTSNTRR-----------------LNGWFYDIFNIPLEDWKRYQ 252
                              +                      G F        + W    
Sbjct: 207 DALSIVLRSKRFQALRAIGDPDGWRVSQKDLAALNLPEDEALGLFEWSAAPGRDVWDTEG 266

Query: 253 IDTRTVEGIDSGFHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311
                           + +   G     AR E L QF     +   P    E      + 
Sbjct: 267 WREANPSLGHGLTERKLRASISGKTEAGARTENLCQFVGVTEDPPFPDGAWEAGTDAASE 326

Query: 312 DDLYAPLIMGCDIAGEGGDKTVVVF 336
               + L    D++      + +  
Sbjct: 327 IAPDSTLWWAIDVS-ANRMHSCIAV 350


>gi|328882907|emb|CCA56146.1| Phage terminase large subunit [Streptomyces venezuelae ATCC 10712]
          Length = 603

 Score = 53.8 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/265 (9%), Positives = 50/265 (18%), Gaps = 33/265 (12%)

Query: 53  RWQL-EFMEAVD--VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PG 107
            WQ  E +  +   VH             +  I   R  GK+ L + + L+++       
Sbjct: 92  PWQEHEIIRPLFGEVHWSDQWGRYVRRYTRATIVMARKNGKSALLSGIALYMLCGDGEES 151

Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
             I   A +  Q                                          +   + 
Sbjct: 152 AEIYGAAATTRQAGKVFEPCTKMVRKSPILAKRLTHIKNVRRL-----------VDERTG 200

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
            +        E  P                DE    PD      +            +  
Sbjct: 201 SHY-------EVIPADADNELGHSPHCFILDEVLSQPDDSLWKAMRTAAGARTQALMLAI 253

Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
           +     +  F   F    +            +     F     +    D       +   
Sbjct: 254 TTETNQHVSFGADFIDEADR------VAEQPQRAPHHFVFVRKAPRTQDELDRLHRLY-- 305

Query: 288 FPQQEVNNFIPHNYIEEAMSREAID 312
                 +  +  +  +E        
Sbjct: 306 --PGRPDLPVSIDPWDEDNWYWPNP 328


>gi|302519879|ref|ZP_07272221.1| conserved hypothetical protein [Streptomyces sp. SPB78]
 gi|302428774|gb|EFL00590.1| conserved hypothetical protein [Streptomyces sp. SPB78]
          Length = 552

 Score = 53.8 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 49/390 (12%), Positives = 86/390 (22%), Gaps = 67/390 (17%)

Query: 38  WGIKGKPLEHFSQPHRWQ-------LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
           W +        + P R +        E  E V  +   N       + +  IS  RG GK
Sbjct: 17  WQVLDWMTAFLAAPDRAEYEPYVPTAEMAEFVLRYYELNPITGRRIVRRGVISRPRGWGK 76

Query: 91  TTLNAWMML-----------WLISTRP---------GMSIICIANSETQLKNTLWAEVSK 130
           +   + + L           W     P            +   A +E Q +N+    +  
Sbjct: 77  SPFVSAIALAEACGPVVPNGWDADGEPVGMGWDRVRTPLVQLAAATEKQTENSWMPLLEM 136

Query: 131 WLSMLP-HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189
             S      +  E     ++      E +  S                 E      G   
Sbjct: 137 ARSGPVLDEYGLEPLDTVVYLRRGKIEPITASATSAKGAKACFASLDQTEDWLPANGGRK 196

Query: 190 THGMAVFNDEASGT------PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243
                 FN  A                      E +   +  +     R +G  YD    
Sbjct: 197 LAKTMRFN--AGKIGGSLIETPNAFTPGEDSVAEQSAADWKAIREGRSRGSGLLYDHREA 254

Query: 244 PLE------------------------DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279
           P +                        D                            D   
Sbjct: 255 PADTDMTDEQSLVYGLRVAYGDSSDHPDGCVLHDPPCAPGWSPIERLAADFWDTSNDPQE 314

Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG----DKTVV- 334
            R + L Q      ++++    +  A     + +    +++G D +        D T + 
Sbjct: 315 LRADYLNQ-ITHAADSWLSEPEVRAASDLGKVVEPGERIVLGFDGSRRRNRKVTDATALV 373

Query: 335 -VFRRGNIIEHIFDWSAKLIQETNQEGCPV 363
                   +  I  W             PV
Sbjct: 374 GCRLSDGHVFPIGVWEQPDGAAGRDWQVPV 403


>gi|20026680|ref|NP_612722.1| DNA packaging terminase subunit 1 [Panine herpesvirus 2]
 gi|19881108|gb|AAM00728.1|AF480884_80 DNA packaging protein UL89 [Panine herpesvirus 2]
          Length = 672

 Score = 53.8 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/175 (13%), Positives = 46/175 (26%), Gaps = 18/175 (10%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GKT     ++ +L+    G+SI  +A+ +   +  L     +              
Sbjct: 211 PRRHGKTWFIIPIISFLLKHMIGISIGYVAHQKHVSQFVLKEVEFRC----------RYT 260

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
               +       ++                T               +   +  DEA    
Sbjct: 261 FARDYLVENKDNVISIDHRGAK-------STALFASCYNTNSIRGQNFHLLLVDEAHFIK 313

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTV 258
                +ILGF  +      +I ++NT      F   + N P +            
Sbjct: 314 KEAFNTILGFLAQNTTKIIFISSTNTTSDATCFLTRLNNAPFDMLNVVSYVCEEH 368


>gi|222149246|ref|YP_002550203.1| hypothetical protein Avi_3048 [Agrobacterium vitis S4]
 gi|221736230|gb|ACM37193.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 452

 Score = 53.8 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 81/276 (29%), Gaps = 34/276 (12%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLIST----RPGMSIICIANSETQLKNTLWAEVS-- 129
           + FK  + A R  GKT       +               + ++  E Q +  +   +   
Sbjct: 20  SRFKLGMFA-RQTGKTFTTTLETVDTCFEAAVSGKRERWVILSRGERQAREAMNEGIKVH 78

Query: 130 -KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
            K   +      F+ +  S        + LE ++   SK   +         P       
Sbjct: 79  CKAYDLAFQEAEFDWEGES-----GTHKALEVTLPHGSKITAL---------PANPDTAR 124

Query: 189 NTHGMAVFNDEASG--TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246
                 VF DE +       I +++    ++    R    TS     +  FY++   P++
Sbjct: 125 GFSAN-VFLDEFAFHKDSQQIWRALFPVISKGWNIRV---TSTPNGKSNKFYELATGPID 180

Query: 247 D-WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA 305
           D W R+ +D               +     D D    E   ++  +    ++ ++ I   
Sbjct: 181 DPWSRHVVDIYQAVRDGLPRDIEELRAGLADEDSWAQEFELKWLDEAS-AWLSYDLISSC 239

Query: 306 MSR---EAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
                 +          +G DI     D  V+    
Sbjct: 240 EDERAGDPEGYQGNVCFVGRDIGRR-EDLHVIWVWE 274


>gi|226949140|ref|YP_002804231.1| putative phage terminase, large subunit [Clostridium botulinum A2
           str. Kyoto]
 gi|226841904|gb|ACO84570.1| putative phage terminase, large subunit [Clostridium botulinum A2
           str. Kyoto]
          Length = 572

 Score = 53.8 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 90/291 (30%), Gaps = 31/291 (10%)

Query: 70  VNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWL--ISTRPGMSIICIANSETQLKNTLWA 126
             +     F+ + I  GR  GK+ LN  +  +L   S      I C+A    Q K  +W 
Sbjct: 91  TKDKEYRRFRSSYIQLGRQNGKSFLNGILGTYLGNFSGYKYGKIFCVATKHDQAK-IVWD 149

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
           E++K++         E+ ++  + S     L    +    +                   
Sbjct: 150 EMNKFIQS--DDDLGELFTVQEYKSTIICNLTNTVIKALGRDTKGLDGLRPLLTVIDEYH 207

Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR-----------FWIMTSNTRRLNG 235
            H  + M    +        I +S++   T                   I+    +  + 
Sbjct: 208 AHKDNQMYKLMEGGQK---KIKQSLISVITTAGFELESPCHKMYKYCKQILEGTEKNESK 264

Query: 236 WFYDIFNIPLEDWKRYQIDTRTVEGIDSG---------FHEGIISRYGLDSDVARIEILG 286
           + Y       +D   YQ   +    +             ++   +    D +    + L 
Sbjct: 265 FIYIAEMDEEDDLNNYQNWIKANPMLQYDREALENLIPVYKSAKAIGSKDWNDFLTKQLN 324

Query: 287 QFPQQEVNNFIPHNYIEEAMSREAIDD-LYAPLIMGCDIAGEGGDKTVVVF 336
            + +     ++      +  S + ++D      I+G D++  GGD T + F
Sbjct: 325 MWVEFTETKYMNMTAWNKCASNKTLEDFRGQEFILGIDLS-SGGDLTSICF 374


>gi|316934282|ref|YP_004109264.1| hypothetical protein Rpdx1_2950 [Rhodopseudomonas palustris DX-1]
 gi|315601996|gb|ADU44531.1| hypothetical protein Rpdx1_2950 [Rhodopseudomonas palustris DX-1]
          Length = 532

 Score = 53.4 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/271 (12%), Positives = 67/271 (24%), Gaps = 31/271 (11%)

Query: 11  LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70
            EQE   +         F  +         K   ++ FS  +  Q  F   V+       
Sbjct: 3   TEQEKAALR--KRFYEDFDFYARHALKVRTKSNEVKPFSM-NAVQRRFHAEVEDQRRRTG 59

Query: 71  NNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK 130
                   +  I  GR  G +T  +      +S R     + +A+     +  L+    +
Sbjct: 60  ------RVRKIILKGRQQGFSTYVSARKYSRLSQRKARKGLVVAHKADSTR-ALFDMYQR 112

Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
           + ++ P        +          E       +D+     T       R +T    H  
Sbjct: 113 YHTLCP--PMLRPTTKYSSRKELVFE------KLDTGIMVATAGGDGVARGETISDAH-- 162

Query: 191 HGMAVFNDEASGTPDIINKSILGFF--TELNPNRFWIMTSNTRRLNGWF---YDIFNIPL 245
                   E +  P    +           N +   +   +T      F   +D      
Sbjct: 163 ------LSEIAFWPQDTAEDNFNSLYQCIPNSDDTEVYIESTANGFNLFKTLWDAAVAGE 216

Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLD 276
            +++ +                G       +
Sbjct: 217 TEFEPFFAAWFETPEYRMPVPAGFERTLEEE 247


>gi|260654759|ref|ZP_05860247.1| putative phage terminase, large subunit [Jonquetella anthropi E3_33
           E1]
 gi|260630474|gb|EEX48668.1| putative phage terminase, large subunit [Jonquetella anthropi E3_33
           E1]
          Length = 514

 Score = 53.4 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/308 (11%), Positives = 78/308 (25%), Gaps = 56/308 (18%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
             WQ  F+  +      N      T +   +   R  GK+ L A + L+++     PG  
Sbjct: 32  QPWQEVFLRELFGRVDRNGLRQYRTCY---VEVPRKNGKSELAAAIALYMLFGDGEPGAE 88

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I   A+   Q      A  +   +         +         +      Q++  D+   
Sbjct: 89  IYSAASERNQAALVFNAAAAMVRASPSLTKRCRIIDSQKRIVYYKNNSFYQAISADA--- 145

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTS 228
                             H  +   V  DE    P+  +  ++              +T+
Sbjct: 146 ---------------DTKHGFNAHCVIYDELHTAPNRNLWDTLATSMGARRQPLMLAITT 190

Query: 229 NTRRLNGWFYDIFNIPL----------------------EDWKRYQIDTRTVEGIDSGFH 266
                    +++ +                         +DW   +   +    +     
Sbjct: 191 AGWDRTSICWELHDYAQKIRQGMLQDSTFLPVIYGAEENDDWGSEKTWKKANPNLGVSVK 250

Query: 267 EGIISRYGLD-------SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD--LYAP 317
              +              +  R   L Q+   +   ++     +   +  A  D     P
Sbjct: 251 LNFLQTEYKKALEIPAFENSFRRLYLDQW-TSQETRWLAMTDWDACDAGPADLDELENEP 309

Query: 318 LIMGCDIA 325
             +G D++
Sbjct: 310 CYVGVDLS 317


>gi|331269396|ref|YP_004395888.1| phage terminase, large subunit, PBSX family [Clostridium botulinum
           BKT015925]
 gi|329125946|gb|AEB75891.1| phage terminase, large subunit, PBSX family [Clostridium botulinum
           BKT015925]
          Length = 419

 Score = 53.4 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/263 (11%), Positives = 71/263 (26%), Gaps = 25/263 (9%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAEVSKWLSMLP 136
            +  GRG  K++  +  ++  I          + +     +  L+ +++ ++   +  L 
Sbjct: 32  WLKGGRGSTKSSFISIEIILNIMKDSQEEKLTNAVIFRRVKDTLRGSVFEQMLWAIGKLK 91

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
               +E+    L  +      +    G D+     + +                +     
Sbjct: 92  CESQWEVNFSPLKLTFKSTGQVVLFKGADNPLKMKSIKVAKGYI---------KYIWYEE 142

Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN-GWFYDIFNIPLEDWKRYQIDT 255
            DE  G   I  ++I        P      + N       W         +D   +  + 
Sbjct: 143 VDEFEGYDKI--RNINQSLMRGGPKFCVFYSFNPPESQRNWANMEVLQTRKDKLVHHSNY 200

Query: 256 RTVE--GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
            +V    +   F         ++      + LG            +  I +    +    
Sbjct: 201 LSVPKEWLGEQFILEAEHIKKVNPTKYEHDYLGA-VTGTGGEVFTNVTIRKM--TDEEIA 257

Query: 314 LYAPLIMGCDIAGEGGD---KTV 333
            +  +  G D  G   D    TV
Sbjct: 258 NFDRVHRGLDF-GYASDPLHYTV 279


>gi|333027410|ref|ZP_08455474.1| putative phage terminase [Streptomyces sp. Tu6071]
 gi|332747262|gb|EGJ77703.1| putative phage terminase [Streptomyces sp. Tu6071]
          Length = 423

 Score = 53.4 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/260 (12%), Positives = 70/260 (26%), Gaps = 29/260 (11%)

Query: 91  TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
           +  +A + +W  + R G ++  +      +     + +   +          +       
Sbjct: 16  SAASARINIWHGAIRSGKTVASLIAFLISVSTAPASGLIVIVGRSLQTIERNVLDPLQDD 75

Query: 151 SGWYAELLEQSMGIDSKHYTITCRTY---SEERPDTFVGPHNTHGMAVFNDEASGTPDII 207
           + +     +      +   TI  RT                       + DEA+  P   
Sbjct: 76  ALFGLIARQVVHTRGATVATILGRTVHLVGAADSRAEGRLRGLTAALAYVDEATLIPRGF 135

Query: 208 NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF--NIPLEDWKRYQIDTRTVEGIDSGF 265
              +LG  +          T+N      W    F       D + +         +D+ +
Sbjct: 136 WNQLLGRLSVPGARLL--ATTNPDNPGHWLKKEFLDREGELDLRSWHFTLDDNPALDAAY 193

Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFI-----PHNYIEE--AMSREA-------I 311
              + S Y       R  I G +  Q             + + +   + R          
Sbjct: 194 VTSLKSEYTG--LWYRRFIAGHWV-QSEGAIYETFDPARHVVRDLPRIDRWVCDAIDYGT 250

Query: 312 DDLYAPLIMGCDIAGEGGDK 331
            + YA +++G      G D+
Sbjct: 251 VNPYADVLLGV-----GADR 265


>gi|186472255|ref|YP_001859597.1| terminase [Burkholderia phymatum STM815]
 gi|184194587|gb|ACC72551.1| Terminase [Burkholderia phymatum STM815]
          Length = 581

 Score = 53.4 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/322 (11%), Positives = 90/322 (27%), Gaps = 55/322 (17%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS-II 111
            WQ   + ++      + +      +   + AG+G GK+ L A + L++++    M   I
Sbjct: 87  PWQKFIVGSLFGWKRRDGSRRFREAY---VEAGKGCGKSPLAAGVGLYMLTADGEMRPEI 143

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A +       L+ +    + + P     E+ +  +                    +  
Sbjct: 144 YAAATRRDQAMILFRDAVAMVDLSP-----ELSNRLVKSGRGERCYNLAY--YAKGGWFR 196

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT- 230
              + S  +                 DE     D    +I+    +        M +N+ 
Sbjct: 197 PIASDSSGQS-------GPRPHCALIDEIHEHRDPTVINIMRAGKKGRSQPLLFMITNSG 249

Query: 231 RRLNGWFYDIFNIPLE---------------------------DWKRYQIDTRTVEGIDS 263
                  ++                                  +    +++    + I  
Sbjct: 250 FDRTSICWEQHQYGTNIVSRAIEDDAYFAYICALDEDEEPFEDESCWIKVNPSLGKTIQK 309

Query: 264 GFHEGIISR-YGLDSDVARIEIL--GQFPQQEVNNFIPHNYIEEAMSREAIDD--LYAPL 318
            +    I +  G+ S  + +  L   Q+     N +I  +        +  D+      +
Sbjct: 310 TYLREQIHQARGMPSQESTVRRLNFCQWVD-AENPWIDGDLWRACEVEDLPDEVFAGRTV 368

Query: 319 IMGCDIAGEGGDKTVVV--FRR 338
             G D++G   D + +    R+
Sbjct: 369 YGGLDLSGV-RDLSALAYVVRQ 389


>gi|226940436|ref|YP_002795510.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
 gi|226715363|gb|ACO74501.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
          Length = 93

 Score = 53.4 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 10/82 (12%)

Query: 8  DQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCH 67
             ++ EL E+   AEC      + +  + WG     LE  + P  WQ E M  +  H  
Sbjct: 1  MADIDDELIEL--AAECATDPLRWALHAYDWGRG--ELEGVTGPRAWQREVMSDIGNHLK 56

Query: 68 SNVNNSNPTIFKCAISAGRGIG 89
          +     +         AGRG+G
Sbjct: 57 NPATRFSAFD------AGRGLG 72


>gi|56419063|ref|YP_146381.1| phage-terminase large subunit [Geobacillus kaustophilus HTA426]
 gi|56378905|dbj|BAD74813.1| phage-terminase large subunit [Geobacillus kaustophilus HTA426]
          Length = 571

 Score = 53.4 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/316 (11%), Positives = 82/316 (25%), Gaps = 56/316 (17%)

Query: 54  WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSII 111
           WQ   + ++    H +            +  GR  GK+T+ + +  +  S     G  + 
Sbjct: 91  WQHFIIGSLYGWVHKDTGLRRFKEGLVFV--GRKNGKSTMVSGLANYGCSKDGEKGADVY 148

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +ANS  Q +           S       F +   ++H    ++++              
Sbjct: 149 LLANSMKQARVIFEECQKMIWSSHLLFKHFRVLRDAIHYDKTFSKIEP------------ 196

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
                   +          +      DE     D    +++   T        +  +   
Sbjct: 197 --------QASDSEKLDGLNAHLAIFDEIHEYKDYKLINVIKNSTGARRQPLILYITTAG 248

Query: 232 RL-NGWFYDIFNIPL--------------------------EDWKRYQIDTRTVEGIDSG 264
              +G   D ++                             +     + +      +D  
Sbjct: 249 YQLDGPLVDYYSKAADVLDGVIEDERSFYFIAEVDEGDDIEDPKNWIKANPNIGVTLDLD 308

Query: 265 -FHEGI--ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR-EAIDDLYAPLIM 320
              E          + +    + L  F + +  +F+ +  I+      +    +  P I 
Sbjct: 309 TLIEEWNARKHIPAERNDFITKRLNVFVKSDEQSFLDYEVIKRNDKTIDIEKLVGMPCIG 368

Query: 321 GCDIAGEGGDKTVVVF 336
           G D++    D T    
Sbjct: 369 GFDLSQT-EDFTSACL 383


>gi|222151209|ref|YP_002560363.1| terminase, large subunit [Macrococcus caseolyticus JCSC5402]
 gi|222120332|dbj|BAH17667.1| terminase, large subunit [Macrococcus caseolyticus JCSC5402]
          Length = 430

 Score = 53.4 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 66/236 (27%), Gaps = 39/236 (16%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP-HRHW 140
           +  G G  K+   A  ++  + +      + +      ++++ ++   + +  L  +   
Sbjct: 29  LVGGYGSSKSYHVALKIILKLIS-EKRKALVVREVFETIRDSCFSLFEEIIYDLELNTKG 87

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
             + +  +             +   +    I       ++P             ++ +E 
Sbjct: 88  VRLTTSPMK------------ITFPNGSQIIFKGM---DKPGKLKSI--NDISLIWLEEC 130

Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-------------- 246
           S       K ++G         + I+++N    + W Y  F I  +              
Sbjct: 131 SEIKYAGFKELIGRLRHPRLRNYMILSTNPVSKSNWTYLHFFINKDAKVIKLDDYRLYKE 190

Query: 247 ------DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
                 D   +         +   +   +      D D+ R+  LGQF        
Sbjct: 191 KTIVLGDTYYHHSTADDNYFLPDDYIAQLDDMKNYDIDLHRVARLGQFGANGKKVL 246


>gi|206975237|ref|ZP_03236151.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
           cereus H3081.97]
 gi|206746658|gb|EDZ58051.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
           cereus H3081.97]
          Length = 590

 Score = 53.4 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/323 (11%), Positives = 82/323 (25%), Gaps = 38/323 (11%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
             WQ   + ++    H +            I  GR  GKTT+ + +  + ++    PG  
Sbjct: 108 QPWQHFVIGSLYGWIHKDTGYRRFREGLIFI--GRKNGKTTMISGLSNYAVAKDNEPGAR 165

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK-- 167
           +  +AN++ Q    L+ E    +   P       ++            +E       K  
Sbjct: 166 VYVLANTKQQAGE-LFDESRAMVQKSPLLRKHLRENQKGIFHDKTHSKIEPRASDSKKLD 224

Query: 168 ---------HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--------KS 210
                          + +                M V+   A    +             
Sbjct: 225 GLNTHLGIFDEIHEFKNFKLINVIKKSRGARKQPMIVYITTAGYQLEGPLVQYYEIATDV 284

Query: 211 ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGII 270
           + G   +     F     N   +      I   P          +  +  +   ++    
Sbjct: 285 LEGIIDQDRKFYFMAEMDNVDEIENPELWIKANPN------MGVSLDLPSLIDDWNTDKH 338

Query: 271 SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLIMGCDIAGEGG 329
           +    +  + +      F   +  +F+    ++      +         + G D++    
Sbjct: 339 TDAEKNDWITKQF--NIFVDNDEMSFVGIEILKRNEGVIDIKGLAGKECVAGYDLSAT-E 395

Query: 330 DKTVVV----FRRGNIIEHIFDW 348
           D T          GN+      W
Sbjct: 396 DFTSACLEFPLDDGNVFVLSHSW 418


>gi|94694803|gb|ABF47048.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
           5]
 gi|94694815|gb|ABF47054.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
           5]
 gi|94694825|gb|ABF47059.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
           5]
 gi|94694853|gb|ABF47073.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
           5]
 gi|94694857|gb|ABF47075.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
           5]
 gi|222354519|gb|ACM48067.1| DNA packaging terminase subunit 1 [Human herpesvirus 5]
 gi|239909445|gb|ACS32392.1| DNA packaging terminase subunit 1 [Human herpesvirus 5]
          Length = 674

 Score = 53.4 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 18/175 (10%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GKT     ++ +L+    G+SI  +A+ +  +   +  EV         RH F   
Sbjct: 213 PRRHGKTWFIIPIISFLLKHMIGISIGYVAHQKH-VSQFVLKEVE-----FRCRHTFA-- 264

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                   +  E  +  + ID +    T    S    ++       +   +  DEA    
Sbjct: 265 ------RDYVVENKDNVISIDHRGAKSTALFASCYNTNS---IRGQNFHLLLVDEAHFIK 315

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTV 258
                +ILGF  +      +I ++NT      F   + N P +            
Sbjct: 316 KEAFNTILGFLAQNTTKIIFISSTNTTSDATCFLTRLNNAPFDMLNVVSYVCEEH 370


>gi|94694837|gb|ABF47065.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
           5]
          Length = 674

 Score = 53.4 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 18/175 (10%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GKT     ++ +L+    G+SI  +A+ +  +   +  EV         RH F   
Sbjct: 213 PRRHGKTWFIIPIISFLLKHMIGISIGYVAHQKH-VSQFVLKEVE-----FRCRHTFA-- 264

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                   +  E  +  + ID +    T    S    ++       +   +  DEA    
Sbjct: 265 ------RDYVVENKDNVISIDHRGAKSTALFASCYNTNS---IRGQNFHLLLVDEAHFIK 315

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTV 258
                +ILGF  +      +I ++NT      F   + N P +            
Sbjct: 316 KEAFNTILGFLAQNTTKIIFISSTNTTSDATCFLTRLNNAPFDMLNVVSYVCEEH 370


>gi|94694821|gb|ABF47057.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
           5]
 gi|94694847|gb|ABF47070.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
           5]
 gi|219879683|gb|ACL51158.1| DNA packaging terminase subunit 1 [Human herpesvirus 5]
          Length = 674

 Score = 53.4 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 18/175 (10%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GKT     ++ +L+    G+SI  +A+ +  +   +  EV         RH F   
Sbjct: 213 PRRHGKTWFIIPIISFLLKHMIGISIGYVAHQKH-VSQFVLKEVE-----FRCRHTFA-- 264

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                   +  E  +  + ID +    T    S    ++       +   +  DEA    
Sbjct: 265 ------RDYVVENKDNVISIDHRGAKSTALFASCYNTNS---IRGQNFHLLLVDEAHFIK 315

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTV 258
                +ILGF  +      +I ++NT      F   + N P +            
Sbjct: 316 KEAFNTILGFLAQNTTKIIFISSTNTTSDATCFLTRLNNAPFDMLNVVSYVCEEH 370


>gi|94694819|gb|ABF47056.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
           5]
 gi|94694829|gb|ABF47061.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
           5]
          Length = 674

 Score = 53.4 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 18/175 (10%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GKT     ++ +L+    G+SI  +A+ +  +   +  EV         RH F   
Sbjct: 213 PRRHGKTWFIIPIISFLLKHMIGISIGYVAHQKH-VSQFVLKEVE-----FRCRHTFA-- 264

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                   +  E  +  + ID +    T    S    ++       +   +  DEA    
Sbjct: 265 ------RDYVVENKDNVISIDHRGAKSTALFASCYNTNS---IRGQNFHLLLVDEAHFIK 315

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTV 258
                +ILGF  +      +I ++NT      F   + N P +            
Sbjct: 316 KEAFNTILGFLAQNTTKIIFISSTNTTSDATCFLTRLNNAPFDMLNVVSYVCEEH 370


>gi|94694807|gb|ABF47050.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
           5]
 gi|94694809|gb|ABF47051.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
           5]
 gi|94694823|gb|ABF47058.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
           5]
 gi|94694839|gb|ABF47066.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
           5]
 gi|242345696|gb|ACS92014.1| DNA packaging terminase subunit 1 [Human herpesvirus 5]
 gi|256557083|gb|ACU83739.1| DNA packaging terminase subunit 1 [Human herpesvirus 5]
          Length = 674

 Score = 53.4 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 18/175 (10%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GKT     ++ +L+    G+SI  +A+ +  +   +  EV         RH F   
Sbjct: 213 PRRHGKTWFIIPIISFLLKHMIGISIGYVAHQKH-VSQFVLKEVE-----FRCRHTFA-- 264

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                   +  E  +  + ID +    T    S    ++       +   +  DEA    
Sbjct: 265 ------RDYVVENKDNVISIDHRGAKSTALFASCYNTNS---IRGQNFHLLLVDEAHFIK 315

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTV 258
                +ILGF  +      +I ++NT      F   + N P +            
Sbjct: 316 KEAFNTILGFLAQNTTKIIFISSTNTTSDATCFLTRLNNAPFDMLNVVSYVCEEH 370


>gi|94694817|gb|ABF47055.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
           5]
          Length = 674

 Score = 53.4 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 18/175 (10%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GKT     ++ +L+    G+SI  +A+ +  +   +  EV         RH F   
Sbjct: 213 PRRHGKTWFIIPIISFLLKHMIGISIGYVAHQKH-VSQFVLKEVE-----FRCRHTFA-- 264

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                   +  E  +  + ID +    T    S    ++       +   +  DEA    
Sbjct: 265 ------RDYVVENKDNVISIDHRGAKSTALFASCYNTNS---IRGQNFHLLLVDEAHFIK 315

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTV 258
                +ILGF  +      +I ++NT      F   + N P +            
Sbjct: 316 KEAFNTILGFLAQNTTKIIFISSTNTTSDATCFLTRLNNAPFDMLNVVSYVCEEH 370


>gi|94694827|gb|ABF47060.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
           5]
          Length = 674

 Score = 53.4 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 18/175 (10%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GKT     ++ +L+    G+SI  +A+ +  +   +  EV         RH F   
Sbjct: 213 PRRHGKTWFIIPIISFLLKHMIGISIGYVAHQKH-VSQFVLKEVE-----FRCRHTFA-- 264

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                   +  E  +  + ID +    T    S    ++       +   +  DEA    
Sbjct: 265 ------RDYVVENKDNVISIDHRGAKSTALFASCYNTNS---IRGQNFHLLLVDEAHFIK 315

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTV 258
                +ILGF  +      +I ++NT      F   + N P +            
Sbjct: 316 KEAFNTILGFLAQNTTKIIFISSTNTTSDATCFLTRLNNAPFDMLNVVSYVCEEH 370


>gi|94694841|gb|ABF47067.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
           5]
          Length = 674

 Score = 53.4 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 18/175 (10%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GKT     ++ +L+    G+SI  +A+ +  +   +  EV         RH F   
Sbjct: 213 PRRHGKTWFIIPIISFLLKHMIGISIGYVAHQKH-VSQFVLKEVE-----FRCRHTFA-- 264

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                   +  E  +  + ID +    T    S    ++       +   +  DEA    
Sbjct: 265 ------RDYVVENKDNVISIDHRGAKSTALFASCYNTNS---IRGQNFHLLLVDEAHFIK 315

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTV 258
                +ILGF  +      +I ++NT      F   + N P +            
Sbjct: 316 KEAFNTILGFLAQNTTKIIFISSTNTTSDATCFLTRLNNAPFDMLNVVSYVCEEH 370


>gi|94694813|gb|ABF47053.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
           5]
 gi|254770949|gb|ACT81760.1| DNA packaging terminase subunit 1 [Human herpesvirus 5]
          Length = 674

 Score = 53.4 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 18/175 (10%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GKT     ++ +L+    G+SI  +A+ +  +   +  EV         RH F   
Sbjct: 213 PRRHGKTWFIIPIISFLLKHMIGISIGYVAHQKH-VSQFVLKEVE-----FRCRHTFA-- 264

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                   +  E  +  + ID +    T    S    ++       +   +  DEA    
Sbjct: 265 ------RDYVVENKDNVISIDHRGAKSTALFASCYNTNS---IRGQNFHLLLVDEAHFIK 315

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTV 258
                +ILGF  +      +I ++NT      F   + N P +            
Sbjct: 316 KEAFNTILGFLAQNTTKIIFISSTNTTSDATCFLTRLNNAPFDMLNVVSYVCEEH 370


>gi|94694843|gb|ABF47068.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
           5]
          Length = 674

 Score = 53.4 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 18/175 (10%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GKT     ++ +L+    G+SI  +A+ +  +   +  EV         RH F   
Sbjct: 213 PRRHGKTWFIIPIISFLLKHMIGISIGYVAHQKH-VSQFVLKEVE-----FRCRHTFA-- 264

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                   +  E  +  + ID +    T    S    ++       +   +  DEA    
Sbjct: 265 ------RDYVVENKDNVISIDHRGAKSTALFASCYNTNS---IRGQNFHLLLVDEAHFIK 315

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTV 258
                +ILGF  +      +I ++NT      F   + N P +            
Sbjct: 316 KEAFNTILGFLAQNTTKIIFISSTNTTSDATCFLTRLNNAPFDMLNVVSYVCEEH 370


>gi|46949065|gb|AAT07420.1| UL89 DNA packaging protein [Macacine herpesvirus 3]
          Length = 671

 Score = 53.4 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 58/175 (33%), Gaps = 18/175 (10%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GKT     ++ +L+    G+SI  +A+ +  +   +  EV         RH F   
Sbjct: 211 PRRHGKTWFIIPIICFLLKHMIGISIGYVAHQKH-VSQFVLKEVE-----FRCRHTFA-- 262

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                   +  E  +  + ID K    T    S    ++       +   +  DEA    
Sbjct: 263 ------KDYVVENKDFVISIDHKGAKSTALFASCYNTNS---IRGQNFHLLLVDEAHFIK 313

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTV 258
           +    +ILGF  +      +I ++NT      F   + N P +            
Sbjct: 314 EKAFNTILGFLAQNTTKIIFISSTNTTSDATCFLTRLNNAPFDMLNVVSYVCEEH 368


>gi|52139262|ref|YP_081537.1| DNA packaging terminase subunit 1 [Human herpesvirus 5]
 gi|39842097|gb|AAR31641.1| DNA packaging terminase subunit 1 [Human herpesvirus 5]
 gi|44903295|gb|AAS48974.1| UL89 [Human herpesvirus 5]
 gi|94694805|gb|ABF47049.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
           5]
 gi|94694811|gb|ABF47052.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
           5]
 gi|94694845|gb|ABF47069.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
           5]
 gi|94694849|gb|ABF47071.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
           5]
 gi|94694851|gb|ABF47072.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
           5]
 gi|94694855|gb|ABF47074.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
           5]
 gi|157780097|gb|ABV71611.1| UL89 [Human herpesvirus 5]
 gi|242345862|gb|ACS92179.1| DNA packaging terminase subunit 1 [Human herpesvirus 5]
 gi|242554146|gb|ACS93421.1| DNA packaging terminase subunit 1 [Human herpesvirus 5]
 gi|254771115|gb|ACT81925.1| DNA packaging terminase subunit 1 [Human herpesvirus 5]
 gi|270311455|gb|ACZ72832.1| DNA packaging terminase subunit 1 [Human herpesvirus 5]
 gi|270355676|gb|ACZ79836.1| DNA packaging terminase subunit 1 [Human herpesvirus 5]
 gi|270355841|gb|ACZ80000.1| DNA packaging terminase subunit 1 [Human herpesvirus 5]
 gi|270356007|gb|ACZ80165.1| DNA packaging terminase subunit 1 [Human herpesvirus 5]
 gi|270356173|gb|ACZ80330.1| DNA packaging terminase subunit 1 [Human herpesvirus 5]
 gi|290564434|gb|ADD39135.1| DNA packaging terminase subunit 1 [Human herpesvirus 5]
 gi|294488421|gb|ADE88081.1| DNA packaging terminase subunit 1 [Human herpesvirus 5]
 gi|317160580|gb|ADV04406.1| DNA packaging terminase subunit 1 [Human herpesvirus 5]
          Length = 674

 Score = 53.4 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 18/175 (10%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GKT     ++ +L+    G+SI  +A+ +  +   +  EV         RH F   
Sbjct: 213 PRRHGKTWFIIPIISFLLKHMIGISIGYVAHQKH-VSQFVLKEVE-----FRCRHTFA-- 264

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                   +  E  +  + ID +    T    S    ++       +   +  DEA    
Sbjct: 265 ------RDYVVENKDNVISIDHRGAKSTALFASCYNTNS---IRGQNFHLLLVDEAHFIK 315

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTV 258
                +ILGF  +      +I ++NT      F   + N P +            
Sbjct: 316 KEAFNTILGFLAQNTTKIIFISSTNTTSDATCFLTRLNNAPFDMLNVVSYVCEEH 370


>gi|256845626|ref|ZP_05551084.1| predicted protein [Fusobacterium sp. 3_1_36A2]
 gi|256719185|gb|EEU32740.1| predicted protein [Fusobacterium sp. 3_1_36A2]
          Length = 463

 Score = 53.4 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/279 (11%), Positives = 73/279 (26%), Gaps = 30/279 (10%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR-HWFEM 143
            R +GK  L  ++            +  +  +  Q K  +    S     +       ++
Sbjct: 52  CRRMGKDLLALYLACKRCIDVSNSVVYYVFPTMKQGKMMILDGYSNNKKKIIDEIIDRKV 111

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
             L L     Y           SK Y +  +                +   +   E +  
Sbjct: 112 LDLPLKSDKLYHSDNTIRFKNGSKIYFVGSQ--------DANNKVGGNLDLLVISEMALI 163

Query: 204 -PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
             + I   ++     +      +   +T R    F  +     + W    ++   +  +D
Sbjct: 164 QNEDIMMYLIPSVVNIKGKIILV---STPRFGSEFNKMIEEKPQKWFIDILNALDIRAVD 220

Query: 263 SG----FHEGIISRYG--LDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA 316
                 + +  +      +       +IL        N     + ++    ++       
Sbjct: 221 ENGERVYTDEKLENVKTLMSESKFEQDILCNIDVANENAIYAASLLKAEWIKDLNITNKK 280

Query: 317 PLI---MGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
             +   +G        D T +VF   N I  I  ++   
Sbjct: 281 LYVSEDLGI------NDSTALVFTVDNTI--IHHYANTD 311


>gi|58039664|ref|YP_191628.1| Phage DNA packaging protein [Gluconobacter oxydans 621H]
 gi|58002078|gb|AAW60972.1| Phage DNA Packaging Protein [Gluconobacter oxydans 621H]
          Length = 437

 Score = 53.4 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 73/285 (25%), Gaps = 31/285 (10%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            ++      V           +  G   GKT +    ++      P        +  T L
Sbjct: 6   RLNDSQREAVRLLGGPARHILLRGGSRSGKTFVLVRAVVIRALKAPDSRHGIFRHRLTAL 65

Query: 121 KNTLWAEVS-KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
           K ++  +   K + M                 GW  +  +  +   +           E+
Sbjct: 66  KASVLRDTFPKVMRMC------------FPQVGWKLDRQDCVVTFPNGSTIFFGGLDDEQ 113

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT-SNTRRLNGWFY 238
           R +            V+ +EAS         +L    +           +N   +  W Y
Sbjct: 114 RTEK---ILGLEFATVYLNEASQISYGARNMLLTRLAQKTGLAVKEYIDANPPSMGHWLY 170

Query: 239 DIFNIP---------LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
            +F             +      +        D+   + + S   L     R  + G++ 
Sbjct: 171 ALFESGIEPKSGEPLADRSLYATMILNPQANRDNLSEDYLASLEALPEREKRRFLYGEYQ 230

Query: 290 QQEVNNFIPHNYIEE-----AMSREAIDDLYAPLIMGCDIAGEGG 329
                        +      A SR  +      +++  D +G  G
Sbjct: 231 SVVEGALWRLELFQREAAITAQSRADVAARMRRILVSVDPSGAAG 275


>gi|327197990|ref|YP_004306307.1| putative terminase ATPase subunit [Lactococcus phage 949]
 gi|306009310|gb|ADM73705.1| putative terminase ATPase subunit [Lactococcus phage 949]
          Length = 565

 Score = 53.4 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/290 (9%), Positives = 67/290 (23%), Gaps = 41/290 (14%)

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126
                 +     +  I A RGI KT +            P  ++     ++ Q    + +
Sbjct: 49  QRVYMRTFFRYKRVGIVASRGISKTYIELLSNYVKCILYPNNALAVAMPTKEQSAKVVKS 108

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
           +  ++    P      + +       +   + +    +D+     + R    +       
Sbjct: 109 KFEEFWRDYPLLKNELIFNKCKFEKDYVKLVFKNGSTLDTLTVGESSRGLRAQGITLEE- 167

Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW------------IMTSNTRRLN 234
                      DE       IN+ I     +                      +      
Sbjct: 168 ---------IVDE-RMDAKTINEVIRPMLAQARNVVGHGVDKENEYSKTEAYVTTASHKQ 217

Query: 235 GWFYDIF-----NIPLEDWKRYQIDTRTV----EGIDSGFHEGIISRYGLDSDVARIEIL 285
            + YD F      +           +  +      +D       +            E  
Sbjct: 218 SYCYDKFKALYEEMEQGKPTIVLGTSYEMGTHFGTLDIDDVNEKLEDPTYSPLSFEREFR 277

Query: 286 GQFPQQEVNNFIPHNYIEEA---------MSREAIDDLYAPLIMGCDIAG 326
             F      + +    I +A         ++ E   +     ++  D+A 
Sbjct: 278 SVFTGSSEKSLVSAEEISKARVLEKPMWKINSEDKKNPNVRFVLSYDVAR 327


>gi|229142759|ref|ZP_04271217.1| Prophage LambdaBa02, terminase, large subunit [Bacillus cereus
           BDRD-ST26]
 gi|228640704|gb|EEK97077.1| Prophage LambdaBa02, terminase, large subunit [Bacillus cereus
           BDRD-ST26]
          Length = 524

 Score = 53.4 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/323 (10%), Positives = 82/323 (25%), Gaps = 38/323 (11%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
             WQ   + ++    H +            I  GR  GKTT+ + +  + ++    PG  
Sbjct: 42  QPWQHFVIGSMYGWIHKDTGYRRFREGLIFI--GRKNGKTTMISGLSNYAVAKDNEPGAR 99

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK-- 167
           +  +AN++ Q    L+ E    +   P       ++            +E       K  
Sbjct: 100 VYVLANTKQQAGE-LFDESRAMVQKSPFLRKHLRENQKGIFHDKTHSKIEPRASDSKKLD 158

Query: 168 ---------HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218
                          + +                M V+   A    +          T++
Sbjct: 159 GLNTHLGIFDEIHEFKNFKLINVIKKSRGARKQPMIVYITTAGYQLEGPLVQYYEIATDV 218

Query: 219 NPNRF--------WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGII 270
                             +   +      I   P          +  +  +   ++    
Sbjct: 219 LERVIDQDRKFYFMAEMDSVDEIENPELWIKANPN------MGVSLDLPSLIDDWNTDKH 272

Query: 271 SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLIMGCDIAGEGG 329
           +    +  + +      F   +  +F+    ++      +  +      + G D++    
Sbjct: 273 TEAEKNDWITKQF--NIFVDNDEMSFVGIEILKRNEEVIDIKELAGKECVAGYDLSST-E 329

Query: 330 DKTVVV----FRRGNIIEHIFDW 348
           D T          GN+      W
Sbjct: 330 DFTSACLEFPLNDGNVFVLSHSW 352


>gi|281356810|ref|ZP_06243301.1| protein of unknown function DUF264 [Victivallis vadensis ATCC
           BAA-548]
 gi|281316937|gb|EFB00960.1| protein of unknown function DUF264 [Victivallis vadensis ATCC
           BAA-548]
          Length = 417

 Score = 53.4 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 80/295 (27%), Gaps = 35/295 (11%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
                       +    S P+ F   +  G   GKT +  + +L       G     +  
Sbjct: 2   KRAFVKTAAQQRAIRLLSGPSRF-VMLYGGSRSGKTFILVYAILVRALRAAGSRHAILRL 60

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
               ++ ++  +              ++  L+    G     ++Q + + +         
Sbjct: 61  HANTVRQSIRFDT-----------LPKVVKLAFPGLGLSESKVDQLIRLPNGSELWFGGL 109

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT-SNTRRLN 234
            +EER D            ++ +E S        + L    +    +       N    +
Sbjct: 110 DTEERADK---ILGKEFATIYFNECSELGFEAVSTALTRLAQRTALKNRAWFDCNPAGKS 166

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTV------------EGIDSGFHEGIISRYGLDSDVARI 282
            W Y +F    +      +                 E +  G+ E  ++       +   
Sbjct: 167 HWSYRLFIERRDPVSGLPLSFPDNYASMLLNPAENRENLPEGYLEETLAGLTERQRLRFQ 226

Query: 283 EILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG---DKTVV 334
           E  G +             IE   SR         +++G D A   G   D+T +
Sbjct: 227 E--GAWLDDLSGALWSTAMIER--SRVEAAPSLERIVIGVDPAVTSGKDSDETGI 277


>gi|213159228|ref|YP_002321273.1| gp89 [Caviid herpesvirus 2]
 gi|212598233|gb|ACJ35861.1| GP89 [Caviid herpesvirus 2]
 gi|324039526|dbj|BAJ78548.1| GP89 [Caviid herpesvirus 2]
          Length = 670

 Score = 53.4 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/298 (13%), Positives = 79/298 (26%), Gaps = 51/298 (17%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GKT     ++ +L+    G+SI  +A+ +   +  L     +   M    H  E +
Sbjct: 211 PRRHGKTWFMIPIICFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFSSTHTIENK 270

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
              +                    + +   T               +   +  DEA    
Sbjct: 271 DNVISI-----------------DHHVAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK 313

Query: 205 DIINKSILGFFTELNPNRFWIMTSNT-RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
                +ILGF  +      +I ++NT      +   + N P +                S
Sbjct: 314 KDAFNTILGFLAQHTTKIVFISSTNTATSATCFLTRLSNSPFDMLNVISYVCEEHMRAFS 373

Query: 264 GFHEGI------------ISRYGLDSDVARIEILGQFPQ---------QEVNNFIPHN-- 300
              +              I+        A + + G F            E    I  +  
Sbjct: 374 EKGDATACPCYRLHKPTFITISSEVRRTANMFLAGSFMDEIMGGTNKISEETVLITDDGR 433

Query: 301 -----YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
                +    ++R+    L   L +  D A             G  I  +  +  +L+
Sbjct: 434 EEFEMFRYSTINRKIRQSLGDTLYVYLDPAFTSN-----RRASGTGIAAVGTYKNQLV 486


>gi|170764163|ref|ZP_02633320.2| phage terminase, large subunit, pbsx family [Clostridium
           perfringens E str. JGS1987]
 gi|170661287|gb|EDT13970.1| phage terminase, large subunit, pbsx family [Clostridium
           perfringens E str. JGS1987]
          Length = 441

 Score = 53.4 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 71/267 (26%), Gaps = 25/267 (9%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
            ++  A  A R  GKT  N +     +        +   ++    K  +        +  
Sbjct: 25  NMYNIAEGAVR-AGKTVDNVFAFAHELKNTKDKLHLATGSTSANAKLNIGD-----ANGF 78

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
              + F  QS      G     ++     +     I   T      +++           
Sbjct: 79  GLEYIFRGQSHWGKYKGNECLYIKGPSTNNKLRIVIFAGTA---LANSYKKIRGNSYGMW 135

Query: 196 FNDEAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP---------- 244
              E +   PD I ++            FW +  N    N + Y  +             
Sbjct: 136 IATEINLHHPDSIKEAFNRTIAAHKRKVFWDL--NPDNPNAFIYKDYIDNYKSKYENGEL 193

Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE 304
              +  Y         I     E I S+Y  +S   + +ILG+                 
Sbjct: 194 KGGYNYYHFTIDDNINISDERKEEIKSQYDKNSIWYQRDILGKRC-VAEGLIYRRFANNP 252

Query: 305 AMSREAIDDLYA--PLIMGCDIAGEGG 329
              R    D+     +++G D  G G 
Sbjct: 253 NSYRAEESDVSNLMKIVIGVDFGGTGS 279


>gi|297618941|ref|YP_003707046.1| hypothetical protein Mvol_0413 [Methanococcus voltae A3]
 gi|297377918|gb|ADI36073.1| hypothetical protein Mvol_0413 [Methanococcus voltae A3]
          Length = 576

 Score = 53.4 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 80/274 (29%), Gaps = 53/274 (19%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA-----WMMLWLISTRPGMS 109
           Q E ++ +  +            +   +  G+G GK  + +      ++  +++  P   
Sbjct: 93  QAEILKKMKKN------------YLSTVLVGKGGGKDFMTSLLFNDELIDLILTDIPYTR 140

Query: 110 I--ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
           +  I IA +     N  + E  +W S       F+    S        ++    + I   
Sbjct: 141 VDFINIAPNADLAHNVFFREFKQWFSRCKLWKLFKNSEKS------PIKINNTFIKIGDL 194

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG----------FFTE 217
               +  + S            T+   +  DE     D    +                 
Sbjct: 195 VKITSGHSRSA-------SFEGTNPKCIVIDE---ISDENFMNAEKIFYQAKSSVQTRWG 244

Query: 218 LNPNRFWIMTS-----NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISR 272
            +     I  +     N     G+     N+ ++D   ++  T  V    S F       
Sbjct: 245 KDGKVILISWTRFPTPNPLDDIGYKIYSENLGIDDVFSFKGATWEVNSHRSKFDFE--DD 302

Query: 273 YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306
           Y  +  +A+     + P+   N FI  + ++   
Sbjct: 303 YKRNGVLAKKMYECKPPELS-NYFINADKLKNCQ 335


>gi|330958838|gb|EGH59098.1| hypothetical protein PMA4326_09820 [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 512

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 50/349 (14%), Positives = 98/349 (28%), Gaps = 65/349 (18%)

Query: 51  PHRW---QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107
           P  W   Q E  + ++         S     +  +  GR  G +T  A       S   G
Sbjct: 33  PFVWNDAQRELHKRLEEQL------SLTGWVRAIVLKGRQQGISTYVAARFYKRTSMNFG 86

Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM-GIDS 166
              + + +       TL+            + +FE+   +L P+       E S   + S
Sbjct: 87  KRTMILTH-LDAATQTLFGM---------AKTFFELSDDTLRPTTKANSGTELSFAKLRS 136

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL-NPNRFWI 225
            +   T  +    R DT    H          E +   +          T     +   I
Sbjct: 137 GYKVATAGSPGAGRSDTIQFLHA--------SEMAFWANAQKIMAGLGQTVPLIDDSEAI 188

Query: 226 MTSNTRRLNGWFYDIFNIP---LEDWKRYQIDTRTVEG----------IDSGFHEGIISR 272
           + S    +   F+  + +      D+    I      G          +    +E + + 
Sbjct: 189 IESTANGMGNLFHQFWQLAVAGKSDYMAVFIPWFVESGYRRAVPKDFELSEEDYEYMEAY 248

Query: 273 YGLDSDVARI--EILGQF--------------PQQEVNNFIPHNYIEE---AMSREAIDD 313
              +  +A    +I   F              P            I+    +++R+    
Sbjct: 249 GLDEEQMAWRAGKISSDFANDVDFFNQEYPATPDLAFQKVGHKPLIKTVKVSLARKKEIK 308

Query: 314 LYAPL---IMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
               +   ++G D A  GGD +  + R+G +   I   +         +
Sbjct: 309 HERRIGAHVVGLDPAR-GGDTSTFIHRQGRVAWGIERNNIPDTMAVVGQ 356


>gi|14251127|ref|NP_116494.1| putative large terminase subunit [Lactococcus phage BK5-T]
 gi|14209619|gb|AAK56802.1|AF176025_2 putative large terminase subunit [Lactococcus phage BK5-T]
 gi|26005523|emb|CAC80143.1| hypothetical protein [Lactococcus phage BK5-T]
          Length = 657

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 46/332 (13%), Positives = 105/332 (31%), Gaps = 47/332 (14%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
                   ++   WQ +F+  + +   ++      T+   ++S  RG GKT + A +M++
Sbjct: 106 PNVDTGEPTELMPWQ-KFIMCMLIGWRNSEGGKRFTVAIISVS--RGQGKTYILAILMVY 162

Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
                     + ++N +  + +  + + SK    +       ++            L ++
Sbjct: 163 SFLFE----SLGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDR 218

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTEL 218
           S+  D                +      + H      DE       + I+K + G     
Sbjct: 219 SILNDEVVMKKMNNKIRAISHEAGQYD-SFHFTTAIFDEIGEVTNREKISKIVSGQVLVK 277

Query: 219 NPNRFWIMTSNTRRLNGWFYDI----FNIPLEDWKRYQIDT------------------- 255
           N     I TS     +  F            +DW R    +                   
Sbjct: 278 NHQFVQISTSYPD-PSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETW 336

Query: 256 -RTVEGIDSGFHEGIISRYGLDSD----------VARIEILGQFPQQEVNNFIPHNYIEE 304
            ++   ++    + I+ +  +D              + + L  + QQ+V++++    +E+
Sbjct: 337 VKSNPLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVEK 396

Query: 305 AMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
           A+  E          +G D +    D T + F
Sbjct: 397 AIIPEFSIH-GQRCYIGIDYSMM-SDNTAIAF 426


>gi|94694831|gb|ABF47062.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
           5]
          Length = 674

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 57/175 (32%), Gaps = 18/175 (10%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GKT     ++ +L+    G+SI  +A+ +   +  L A         P RH F   
Sbjct: 213 PRRRGKTWFIIPIISFLLKHMIGISIGYVAHHKHVSQFVLTAV------EFPCRHTFA-- 264

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                   +  E  +  + ID +    T    S    ++       +   +  DEA    
Sbjct: 265 ------RDYVVENKDNVISIDHRGAKSTALFASCYDTNS---IRGQNFHLLLVDEAHFIK 315

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTV 258
                +ILGF  +      +I ++NT      F   + N P +            
Sbjct: 316 KEAFNTILGFLAQNTTKIIFISSTNTTSDATCFLTRLNNAPFDMLNVVSYVCEEH 370


>gi|13095784|ref|NP_076675.1| terminase [Lactococcus phage bIL286]
 gi|12830973|gb|AAK08328.1|AF323669_41 terminase [Lactococcus phage bIL286]
          Length = 660

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 46/332 (13%), Positives = 105/332 (31%), Gaps = 47/332 (14%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
                   ++   WQ +F+  + +   ++      T+   ++S  RG GKT + A +M++
Sbjct: 109 PNVDTGEPTELMPWQ-KFIMCMLIGWRNSEGGKRFTVAIISVS--RGQGKTYILAILMVY 165

Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
                     + ++N +  + +  + + SK    +       ++            L ++
Sbjct: 166 SFLFE----SLGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDR 221

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTEL 218
           S+  D                +      + H      DE       + I+K + G     
Sbjct: 222 SILNDEVVMKKMNNKIRAISHEAGQYD-SFHFTTAIFDEIGEVTNREKISKIVSGQVMVE 280

Query: 219 NPNRFWIMTSNTRRLNGWFYDI----FNIPLEDWKRYQIDT------------------- 255
           N     I TS     +  F            +DW R    +                   
Sbjct: 281 NHQFVQISTSYPD-PSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETW 339

Query: 256 -RTVEGIDSGFHEGIISRYGLDSD----------VARIEILGQFPQQEVNNFIPHNYIEE 304
            ++   ++    + I+ +  +D              + + L  + QQ+V++++    +E+
Sbjct: 340 VKSNPLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVEK 399

Query: 305 AMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
           A+  E          +G D +    D T + F
Sbjct: 400 AIIPEFSIH-GQRCYIGIDYSMM-SDNTAIAF 429


>gi|15673381|ref|NP_267555.1| terminase large subunit [Lactococcus lactis subsp. lactis Il1403]
 gi|12724386|gb|AAK05497.1|AE006371_11 prophage pi3 protein 26, terminase large subunit [Lactococcus
           lactis subsp. lactis Il1403]
          Length = 657

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 46/332 (13%), Positives = 105/332 (31%), Gaps = 47/332 (14%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
                   ++   WQ +F+  + +   ++      T+   ++S  RG GKT + A +M++
Sbjct: 106 PNVDTGEPTELMPWQ-KFIMCMLIGWRNSEGGKRFTVAIISVS--RGQGKTYILAILMVY 162

Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
                     + ++N +  + +  + + SK    +       ++            L ++
Sbjct: 163 SFLFE----SLGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDR 218

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTEL 218
           S+  D                +      + H      DE       + I+K + G     
Sbjct: 219 SILNDEVVMKKMNNKIRAISHEAGQYD-SFHFTTAIFDEIGEVTNREKISKIVSGQVMVE 277

Query: 219 NPNRFWIMTSNTRRLNGWFYDI----FNIPLEDWKRYQIDT------------------- 255
           N     I TS     +  F            +DW R    +                   
Sbjct: 278 NHQFVQISTSYPD-PSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETW 336

Query: 256 -RTVEGIDSGFHEGIISRYGLDSD----------VARIEILGQFPQQEVNNFIPHNYIEE 304
            ++   ++    + I+ +  +D              + + L  + QQ+V++++    +E+
Sbjct: 337 VKSNPLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVEK 396

Query: 305 AMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
           A+  E          +G D +    D T + F
Sbjct: 397 AIIPEFSIH-GQRCYIGIDYSMM-SDNTAIAF 426


>gi|229590327|ref|YP_002872446.1| putative phage terminase large subunit [Pseudomonas fluorescens
           SBW25]
 gi|229362193|emb|CAY49095.1| putative phage terminase large subunit [Pseudomonas fluorescens
           SBW25]
          Length = 496

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 46/346 (13%), Positives = 88/346 (25%), Gaps = 79/346 (22%)

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126
              ++       +  I   R +G TTL   + L   +         IA++    K     
Sbjct: 36  QEQIDYFQGMHTRNIILKARQLGFTTLVCIVQL-DAALFEAAKCALIAHTLNDAKRLFRE 94

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
           +V      LP           L  +          +            ++      T   
Sbjct: 95  KVKYAYDNLPK---------ELRAANPARSDAAGELVFSKGGSLYVSTSFRG---GTLRY 142

Query: 187 PHNTHGMAVFNDEASGT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242
            H          E        P    + + G F  +    F  + S      G+F+D   
Sbjct: 143 LH--------VSEFGKICAKFPHKAREIVTGAFEAVAAECFVTIESTAEGRAGYFFDYSQ 194

Query: 243 IPLE-----------DWKRYQIDTRTV------------EGIDSGFHEGIISRYGLDSD- 278
                          DWK +                       + +   + ++ G+D++ 
Sbjct: 195 SAERQQLAGVPLGLLDWKFFFFSWWNNKAYWLDPTDVVIPQRLTDYFNELFAKQGIDTNP 254

Query: 279 ------VARIEILGQ-------------FPQQEVNNFIPHNYIE---EAMSREAIDDLYA 316
                  A+ + LG              F Q     +    + +           D+ + 
Sbjct: 255 GQRAWYAAKEKTLGDDMKREYPSLPAEAFQQSIEGAYYAKQFTKLYGAQRIGALPDNSHL 314

Query: 317 PLIMGCDIAGEGGDKTVVVFRRGNIIEHIF-DWSAKLIQETNQEGC 361
           P+    DI    GD T + F     +  +  ++      E + EG 
Sbjct: 315 PVHTIWDIGV--GDSTAIWF-----VRIVGEEYHVIDFYENSGEGL 353


>gi|189187385|gb|ACD84552.1| terminase [Cyprinid herpesvirus 1]
          Length = 783

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 49/153 (32%), Gaps = 9/153 (5%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GKTT+ +  +L  + +  G+ I+  A +     NT+   V  +++    + WF   
Sbjct: 229 PRRCGKTTIVSI-VLGAMLSFMGIDIMVQAQNLNMA-NTIQKTVQDFMNHYKSKSWF--- 283

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                          +++           +T +     +       +      DEA+   
Sbjct: 284 --PEKFKYKEVTGTCKNLVYHFNPGAKDKKTTAHYLASSGNSARGQNPDICVVDEAAFVG 341

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
             +  S+L   T     +     S+    + W 
Sbjct: 342 ANLLVSVLPLMTVKGTKQIH--ISSPGSADSWI 372


>gi|257063552|ref|YP_003143224.1| phage terminase-like protein, large subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256791205|gb|ACV21875.1| phage terminase-like protein, large subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 546

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 41/299 (13%), Positives = 81/299 (27%), Gaps = 36/299 (12%)

Query: 28  FKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRG 87
              F+ R F    KG+      +   WQ  F+ A+      +            IS  R 
Sbjct: 53  PIEFMRR-FCRHSKGEWAGKPLELELWQKAFVCALFGFVDKDTGERRFNEALLCIS--RK 109

Query: 88  IGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
            GK+TL A ++L+L++    PG  +  +A    Q K  ++ E +  +   P         
Sbjct: 110 GGKSTLAAGILLYLLTADGEPGAEVYTVATKLDQAK-LIFDEAAHMVEQSPT-------- 160

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
           L+        +L         +       T                   V  DE  G  D
Sbjct: 161 LAKRIKKRRTDLYFAGQMSKMQPLGKNSNTLDGLNASA-----------VCIDELHGITD 209

Query: 206 -IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264
             + + +    +        + T+        F D++       K           +   
Sbjct: 210 RNLYEVMKQSMSTRRQPLLLMTTTAGFVRECIFDDMYEYAE---KVLNGVIEDERFLAVV 266

Query: 265 FHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
           +    +  +  +    +           +      + +   + R          I+  D
Sbjct: 267 YELDTVEEWKDEKAWYKA-------NPSLGTVKKLDDLRAKVERAKNSPNDLNGILCKD 318


>gi|325842543|ref|ZP_08167714.1| helicase C-terminal domain protein [Turicibacter sp. HGF1]
 gi|325489587|gb|EGC91951.1| helicase C-terminal domain protein [Turicibacter sp. HGF1]
          Length = 624

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 49/179 (27%), Gaps = 10/179 (5%)

Query: 60  EAVDVHCHSNVNN----SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
             +  H    ++        + F+  +    G GKT   +W +L       G  ++ IA+
Sbjct: 16  RELYEHQLEAISCLDEMDEQSSFRTLVVIPTGGGKTLTASWWLLKKAL-NEGKKVLWIAH 74

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
            +  L+  L        +      W    S          + + Q    D          
Sbjct: 75  RQMLLEQALMTFKQNAYATCMPTRW----SFDYRIVSGIHDKVSQIKKEDDLLIISKDSL 130

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
            S           +   + V  DEA   P    ++IL +          +  + T    
Sbjct: 131 VSRLNGLKPW-LKDQKEVYVVIDEAHHAPAKSYQTILNYIDSQVEQVKLLGLTATPFRT 188


>gi|293375270|ref|ZP_06621552.1| DEAD/DEAH box helicase [Turicibacter sanguinis PC909]
 gi|292646026|gb|EFF64054.1| DEAD/DEAH box helicase [Turicibacter sanguinis PC909]
          Length = 624

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 49/179 (27%), Gaps = 10/179 (5%)

Query: 60  EAVDVHCHSNVNN----SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
             +  H    ++        + F+  +    G GKT   +W +L       G  ++ IA+
Sbjct: 16  RELYEHQLEAISCLDEMDEQSSFRTLVVIPTGGGKTLTASWWLLKKAL-NEGKKVLWIAH 74

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
            +  L+  L        +      W    S          + + Q    D          
Sbjct: 75  RQMLLEQALMTFKQNAYATCMPTRW----SFDYRIVSGIHDKVSQIKKEDDLLIISKDSL 130

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
            S           +   + V  DEA   P    ++IL +          +  + T    
Sbjct: 131 VSRLNGLKPW-LKDQKEVYVVIDEAHHAPAKSYQTILNYIDSQVEQVKLLGLTATPFRT 188


>gi|153955889|ref|YP_001396654.1| hypothetical protein CKL_3280 [Clostridium kluyveri DSM 555]
 gi|219856242|ref|YP_002473364.1| hypothetical protein CKR_2899 [Clostridium kluyveri NBRC 12016]
 gi|146348747|gb|EDK35283.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
 gi|219569966|dbj|BAH07950.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 450

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/227 (10%), Positives = 67/227 (29%), Gaps = 38/227 (16%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           +  G G  K+   A  ++  +      + + +      ++++ ++ + + +  +      
Sbjct: 25  LVGGYGSSKSYHVALKLILKLLQ-EKRTALVVREVFDTIRDSCYSLLEEIVIDMGLDTRI 83

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
           +  +  +             +   +    I       ++P         +   V+ +E S
Sbjct: 84  KFTASPM------------QVRFPNGSKIIFKGM---DKPSKLKSI--NNVSIVWIEECS 126

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-------------------- 241
                  K +LG     + +   I+++N    + W Y  F                    
Sbjct: 127 EVKYEGFKELLGRLRHPSLSLHMILSTNPVSKDNWTYKHFFKNEKKKTFILDDEELYKKR 186

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
            +   +   +         +   + E +      D D+ RI   G+F
Sbjct: 187 IVVRNNTYYHHSLADDNLFLPKSYIEQLEELKTYDIDLYRIARKGRF 233


>gi|30263956|ref|NP_846333.1| prophage LambdaBa02, terminase, large subunit, putative [Bacillus
           anthracis str. Ames]
 gi|47778245|ref|YP_020739.2| prophage LambdaBa02, terminase, large subunit [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|30258600|gb|AAP27819.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
           anthracis str. Ames]
 gi|47551950|gb|AAT33214.2| putative prophage LambdaBa02, terminase, large subunit [Bacillus
           anthracis str. 'Ames Ancestor']
          Length = 562

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/323 (11%), Positives = 82/323 (25%), Gaps = 38/323 (11%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
             WQ   + ++    H +            I  GR  GKTT+ + +  + ++    PG  
Sbjct: 80  QPWQHFVIGSLYGWIHKDTGYRRFREGLIFI--GRKNGKTTMISGLSNYAVAKDNEPGAR 137

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK-- 167
           +  +AN++ Q    L+ E    +   P       ++            +E       K  
Sbjct: 138 VYVLANTKQQAGE-LFDESRAMVQKSPLLRKHLRENQKGIFHDKTHSKIEPRASDSKKLD 196

Query: 168 ---------HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--------KS 210
                          + +                M V+   A    +             
Sbjct: 197 GLNTHLGIFDEIHEFKNFKLINVIKKSRGARKQPMIVYITTAGYQLEGPLVQYYEIATDV 256

Query: 211 ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGII 270
           + G   +     F     +   +      I   P          +  +  +   ++    
Sbjct: 257 LEGVIDQDRKFYFMAEMDSVDEIENPELWIKANPN------MGVSLDLPSLIDDWNTDKH 310

Query: 271 SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLIMGCDIAGEGG 329
           +    +  + +      F   +  +F+    ++      +         + G D++    
Sbjct: 311 TDAEKNDWITKQF--NIFVDNDEMSFVGIEILKRNEEVIDIKGLAGKECVAGYDLSAT-E 367

Query: 330 DKTVVV----FRRGNIIEHIFDW 348
           D T          GN+      W
Sbjct: 368 DFTSACLEFPLDDGNVFVLSHSW 390


>gi|29832064|ref|NP_826698.1| phage-related terminase large subunit [Streptomyces avermitilis
           MA-4680]
 gi|29609182|dbj|BAC73233.1| putative phage-related terminase large subunit [Streptomyces
           avermitilis MA-4680]
          Length = 432

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/253 (11%), Positives = 62/253 (24%), Gaps = 40/253 (15%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
              KT  +    L  +   P  +++    +   L+     E+   L      +       
Sbjct: 30  RSAKTITSLIDWLDFVRNGPPGNLLMAGKTTRTLRQNCIDELVSILGTQLCSY------- 82

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                                         S     +         +  + DE S  P+ 
Sbjct: 83  -------------NEGKGVLTLLGRRIIIASGNDESSKDKIRGLSLVGAYVDELSTMPES 129

Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR---------- 256
               +    ++ NP    I TSN    N W    +            + R          
Sbjct: 130 FFSMLTSRMSDANPRL--IGTSNPDSANHWLKKKYLDKARVHLTRTGEVRTPGNDLDLAR 187

Query: 257 ------TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
                     +   + +   + Y     + +  ILG++            + ++    + 
Sbjct: 188 LTFVIDDNPTLTPTYVQQRKAEYAATPLLYKRLILGEWCI-AEGAVYEV-FDDQRHVVDI 245

Query: 311 IDDLYAPLIMGCD 323
           + ++   L +G D
Sbjct: 246 VPEIVQWLGVGLD 258


>gi|312900430|ref|ZP_07759739.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
           TX0470]
 gi|311292452|gb|EFQ71008.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
           TX0470]
          Length = 451

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/282 (11%), Positives = 73/282 (25%), Gaps = 39/282 (13%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  +  GRG GK+      ++  I   P +S + +   +  +  +++A      + +  R
Sbjct: 31  RYVLKGGRGSGKSFHIPMRIMLDIMEYP-VSALGVRKVQNTILKSVYANFKGAANAMGVR 89

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN- 197
           H F                 +  +    +   I      +  P+      +         
Sbjct: 90  HLFRF------------VDSKLEITYRPRGNKIYFAGADD--PEKIKSIKDADFPLAIMW 135

Query: 198 ----------DEASGTPDIIN-KSILGFFTELNPNRFWIMT-------SNTR-RLNGWFY 238
                     DE +   + +  + + G     +  +             N   R   W  
Sbjct: 136 IEELAEFKTEDEVTTIENSVLREELEGKIVNESKRKNVYPFDYSFYYSYNPPKRRQSWVN 195

Query: 239 DIFNIP--LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
             +       +   +         +   F E   +         R E LG+         
Sbjct: 196 KKYESSFIDNNTYVHHSTYLGNHHLSKKFIEEAENVKANKPLKYRWEYLGE-AIGSGVVP 254

Query: 297 IPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
             +  IE+    + +   +  +  G D  G   D    V   
Sbjct: 255 FGNLKIEKGCITDEMVANFDNIRNGLDF-GYATDPLAFVRWH 295


>gi|189187379|gb|ACD84549.1| terminase [Cyprinid herpesvirus 2]
          Length = 787

 Score = 53.0 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 47/153 (30%), Gaps = 9/153 (5%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GKTT+ +  +L  + +  G+ I+  A +    +      V  ++     + WF   
Sbjct: 233 PRRCGKTTIVSI-VLGAMLSFMGIDIMVQAQNLAMAQTI-RKHVQSFMDAYKEKSWF--- 287

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                         ++S+    +       T +     +       +      DEA+   
Sbjct: 288 --PDKFKYKEFTGTDKSLVYHFEPGVKDKSTTAHYLASSGNSARGQNPDICVVDEAAFVG 345

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
             +  S+L   T     +     S+    + W 
Sbjct: 346 ANLLVSVLPLMTVKGTKQIH--ISSPGSADSWI 376


>gi|300766681|ref|ZP_07076598.1| bacteriophage terminase large subunit [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|300495781|gb|EFK30932.1| bacteriophage terminase large subunit [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
          Length = 632

 Score = 53.0 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 47/333 (14%), Positives = 97/333 (29%), Gaps = 47/333 (14%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
                   ++   WQ EF+ A+ +   ++      +    +++  RG GKT L A +  +
Sbjct: 88  PNVDTGEPTKLMPWQ-EFIMAMLIGWRNDDGGKRFSRAIVSVA--RGQGKTYLMAIITAY 144

Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLS--MLPHRHWFEMQSLSLHPSGWYAELL 158
                     + ++N +  + +  + + SK L            ++           +  
Sbjct: 145 SFLIE----SLGLSNQDYLVSSINYKQTSKILGYIKSMLAKIATIEPFKTLIQDSGLDTR 200

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFT 216
             S   D    + T         +      + H      DE         I+K + G   
Sbjct: 201 TLSSQADQVTMSKTNNKLRAISHEAGQYD-SFHFTTAIFDEIGEVRTRQKISKIVSGQVK 259

Query: 217 ELNPNRFWIMTSNTRRLNGWFYDIFNIPL-------EDWKRYQIDTRTVEGIDSGFHEGI 269
             N     I T+       +  D   I          D   Y     + + +D  +   +
Sbjct: 260 VRNKQFIQISTAYPDPNVPFHDDERMIQQAMEQDYLRDADTYLGLIWSQDNLDETYKPDM 319

Query: 270 ISRYG-------------------LDSDV-------ARIEILGQFPQQEVNNFIPHNYIE 303
             +                      DSD         + + L  + +Q  ++F+    +E
Sbjct: 320 WVKSNPLLDLPSQREVLLNGLTDKRDSDALSGTLNDFQNKNLNLWLEQSTDSFLKLPDVE 379

Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
            A+      D    + +G D +    D T + F
Sbjct: 380 RAIISSFSFD-DRQVYIGFDYSMF-SDNTALAF 410


>gi|319942300|ref|ZP_08016615.1| hypothetical protein HMPREF9464_01834 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804173|gb|EFW01073.1| hypothetical protein HMPREF9464_01834 [Sutterella wadsworthensis
           3_1_45B]
          Length = 566

 Score = 53.0 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 34/316 (10%), Positives = 82/316 (25%), Gaps = 56/316 (17%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
             WQ+  +            +      +  I   RG GK++L++ + L+ +     PG  
Sbjct: 80  EPWQIFIL--TTSFGWRRRADGGRRFRRVYIEVPRGNGKSSLSSGVGLYCLVADKEPGAE 137

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           +   A +  Q K              P R  F ++ L+                  +  Y
Sbjct: 138 VYSFATTRDQAKIVFGDAKQMAKQNEPLRQRFGLEVLA------------------NALY 179

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNRFWIMTS 228
             +  +  + +          +      DE  +     +   +     +   +  W++T+
Sbjct: 180 VPSTNSTFQAKSAEGSTLDGLNTHLAVIDELHAHKTRDVYDVVETSLGKRLNSLLWVITT 239

Query: 229 NTRRLNGWFYDIFNI----------------------PLEDWKRYQIDTRTVEGIDSGFH 266
                +G  Y++  +                        +DW   +   +          
Sbjct: 240 AGFDTSGICYEVRMMVTRVLGKEISDETQFGVIYGLDDGDDWTTEEALMKANPNWGVSVM 299

Query: 267 EGIISRYGLDSDV-------ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD--LYAP 317
             ++      +          + + L  +       ++     +     E          
Sbjct: 300 PEMVLSLQKKAIALPSAMNNFKTKHLNVWCSAS-TAWMDMQAWKRCEVPEMSITDFEGRK 358

Query: 318 LIMGCDIAGEGGDKTV 333
             +G D+ G   D T 
Sbjct: 359 CFIGLDL-GSKSDLTA 373


>gi|308180865|ref|YP_003924993.1| bacteriophage terminase large subunit [Lactobacillus plantarum
           subsp. plantarum ST-III]
 gi|308046356|gb|ADN98899.1| bacteriophage terminase large subunit [Lactobacillus plantarum
           subsp. plantarum ST-III]
          Length = 632

 Score = 53.0 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 42/333 (12%), Positives = 94/333 (28%), Gaps = 47/333 (14%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
                   ++   WQ EF+ A+ +   ++      +    +++  RG GKT L A +  +
Sbjct: 88  PNVDTGEPTKLMPWQ-EFIMAMLIGWRNDDGGKRFSRAIVSVA--RGQGKTYLMAIITAY 144

Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLS--MLPHRHWFEMQSLSLHPSGWYAELL 158
                     + ++N +  + +  + + SK L            ++      +    +  
Sbjct: 145 SYLIE----SLGLSNQDYLVSSINYKQTSKILGYIKSMLAKIATIEPFKSLIADSGLDTR 200

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFT 216
             S   D    +           +      + H      DE         ++K + G   
Sbjct: 201 TLSSQADQVVMSSNNNKLRAISHEAGQYD-SFHFTTAIFDEIGEIKTRQKVSKIVSGQVK 259

Query: 217 ELNPNRFWIMTSNTRRLNGWFYDIFNIPL-------EDWKRYQIDTRTVEGIDSGFHEGI 269
             N     I T+       +  D   I          D   Y     + + +D  +   +
Sbjct: 260 VPNRQFIQISTAYPDPTVPFHDDERMIQQAMEQDYLRDADTYLGLIWSQDNLDETYKPDM 319

Query: 270 I--------------------------SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
                                             +  + + L  + +Q  ++F+    +E
Sbjct: 320 WVKSNPLLDLPSQREVLLNGLTDKCDSDALSGTLNDFQNKNLNLWLEQSADSFLKLPDVE 379

Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
            A+      D    + +G D +    D T + F
Sbjct: 380 RAIISSFSFD-DRQVYIGFDYSMF-SDNTALAF 410


>gi|73695754|gb|AAZ80628.1| rhUL89 [Macacine herpesvirus 3]
          Length = 671

 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 57/175 (32%), Gaps = 18/175 (10%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GKT     ++ +L+    G+SI  +A+ +  +   +  EV         RH F   
Sbjct: 211 PRRHGKTWFIIPIICFLLKHMIGISIGYVAHQKH-VSQFVLKEVE-----FRCRHTFA-- 262

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                   +  E  +  + ID K    T    S    ++       +   +  DEA    
Sbjct: 263 ------KDYVVENKDFVISIDHKGAKSTALFASCYNTNS---IRGQNFHLLLVDEAHFIK 313

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTV 258
                +ILGF  +      +I ++NT      F   + N P +            
Sbjct: 314 KEAFNTILGFLAQNTTKIIFISSTNTTSDATCFLTRLNNAPFDMLNVVSYVCEEH 368


>gi|70731126|ref|YP_260867.1| hypothetical protein PFL_3766 [Pseudomonas fluorescens Pf-5]
 gi|68345425|gb|AAY93031.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
          Length = 433

 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 72/265 (27%), Gaps = 37/265 (13%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
            P  F+  + AG G GKT +    +       P ++    A +  Q+++  +  + +   
Sbjct: 14  LPHKFRAFV-AGFGSGKTWVGCSALSKHFMEWPCVNAGYFAPTYPQIRDIFYPTMDEVA- 71

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
                          +  G   ++ + +  +          T      +           
Sbjct: 72  ---------------YDWGLKTKINQANHEVHIYSGRQCRGTVICRSMEKPQTIVGFKIG 116

Query: 194 AVFNDEA----SGTPDIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW 248
               DE     S       + I+      L   +  +  + T     + +  F   L D 
Sbjct: 117 HALVDELDVLTSIKAQQAWRKIIARMRYNLPGLKNGVDVTTTPEGFKFVFQQFVKQLRDK 176

Query: 249 KRYQI-------DTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
             ++         T   E  +   +   ++  Y     + R  + GQF      +     
Sbjct: 177 PAFKEMYGLVQASTFDNELNLPDDYIPSLMESYPEQ--LIRAYLNGQFVNLTSGSIYHAY 234

Query: 301 Y--IEEAMSREAIDDLYAPLIMGCD 323
              + +            PL +G D
Sbjct: 235 DRKLNQCFDT---VQAGEPLFIGMD 256


>gi|152976656|ref|YP_001376173.1| PBSX family phage terminase large subunit [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025408|gb|ABS23178.1| phage terminase, large subunit, PBSX family [Bacillus cytotoxicus
           NVH 391-98]
          Length = 434

 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 76/269 (28%), Gaps = 25/269 (9%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
             ++      RG  K+      +   +   P  +I+ +      LK + + +    ++ L
Sbjct: 32  NFYRVC-KGSRGSKKSKTTVINLTKRLMQYPWANILVVRRFSNTLKQSCYTDFKWAINRL 90

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
             +H F++       + +     +           IT  T                    
Sbjct: 91  KVKHLFKLNESMPEIT-YIPTGQKILFRGLDDPLKITSITVDVGI-----------LCWA 138

Query: 196 FNDEASGTPDIIN-----KSILGFFTELNPNRFWIMTSNTRRLN----GWFYDIFNIPLE 246
           + +EA    D        +SI G +   +  +   +T N    N     +F+D      +
Sbjct: 139 WFEEAYEIEDQHKFETVVESIRGSWDSPDFFKQITVTFNPWSENHWLKSYFFDEETQAYD 198

Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306
            +       +  E +D        S Y  +   ARI   G++          +  + +  
Sbjct: 199 TF-AITTTYKCNEWLDKQDRARYESLYEKNPRRARIVCDGEW-GVADGLVYENFQVRDFD 256

Query: 307 SREAIDDLYAPLIMGCDIAGEGGDKTVVV 335
             E           G D      D T + 
Sbjct: 257 IDEIRQRKDVQSAFGLDFGYT-NDPTALC 284


>gi|40643140|emb|CAE14675.1| unnamed protein product [Leptospira phage LE1]
          Length = 563

 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 44/304 (14%), Positives = 85/304 (27%), Gaps = 33/304 (10%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM-MLWLISTRPGMSIICI 113
           QLE +E +              I   +    RG GK+T+ +   ++WLI  R    +I +
Sbjct: 71  QLELIEDIQSFAGKKGRAPMKIIRALS----RGFGKSTILSLCGVMWLILRRDWHFVIMV 126

Query: 114 ANSETQLKNTLWA----------EVSKWLSMLPHRHW----FEMQSLSLHPSGWYAELLE 159
           + S +Q K  L             VS +  + P +           L +   G    + +
Sbjct: 127 SASLSQAKGFLQKIVDECEDNELLVSDFPELRPAKDQKGQNVAWNDLDIVFRGGARIIAK 186

Query: 160 QSMGIDSKHYTITCRT--YSEERPDTFVGPHNTHGM---AVFNDEAS-GTPDIINKSILG 213
             +           R      + PD      +   M     + D A+    +     ++ 
Sbjct: 187 GFLNAIRGTRYRQYRPDALIVDDPDEEKDVESDSRMQKKYRWFDRAALKLGNQWGIDVIL 246

Query: 214 FFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRY 273
            +T L+PN    +  N       ++D               +             +I   
Sbjct: 247 SYTTLSPNCIGEVIYN---DTKKYWDWNRKKFSAIGVRPDGSEYSTWEAGAPLSMLIKER 303

Query: 274 GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE---GGD 330
            +D      E       +    F     I+              L +  D++       D
Sbjct: 304 EVDPISFAREKQNVILAEIDQKFKSR--IQRYTFVRPDSWEGWTLAVAVDLSLGKTQRSD 361

Query: 331 KTVV 334
            + +
Sbjct: 362 FSAI 365


>gi|300853553|ref|YP_003778537.1| phage terminase large subunit [Clostridium ljungdahlii DSM 13528]
 gi|300433668|gb|ADK13435.1| phage terminase, large subunit [Clostridium ljungdahlii DSM 13528]
          Length = 516

 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/317 (11%), Positives = 87/317 (27%), Gaps = 55/317 (17%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL-ISTRPGMSII 111
            WQ + ++ +      N      T +   +   +  GK+ + A + L+L  +     + +
Sbjct: 33  PWQDKIIKDIFGTVKDNGYRKYNTAY---VEIPKKNGKSEIAAAIALYLTCADNEWGAEV 89

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
               ++ Q  + ++      +   P        +L        ++     M + S +  +
Sbjct: 90  YGCAADRQQASIVFDVAVDMVDQCP--------ALKKRIKPVISQKRLVYMPLGSFYQVL 141

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTSNT 230
           +   +S+         H  +   V  DE    P+  +   +     +      + + +  
Sbjct: 142 SSEAFSK---------HGLNVHGVIFDELHAQPNRELYDVMTKGSGDARMQPLFFLITTA 192

Query: 231 RRLNGWFYDIFNIPLEDW---------------------------KRYQIDTRTVEGIDS 263
                      +   ED                              Y+ +      I  
Sbjct: 193 GTDRNSICYEVHQKAEDILRGKKIDKTFYPVIYGIKDEDDWSLEENWYKANPSLEHTIPI 252

Query: 264 GFHEGIISRYGLDS---DVARIEILGQFPQQEVNNFIPHNYIEEA-MSREAIDDLYAPLI 319
                  +    +    ++ R   L Q+ +Q V  ++P +   E                
Sbjct: 253 EKVRDAFNSAKENPAEENIFRQLRLNQWVKQSV-RWMPMDVWNECSFEVNIEKLKGRECY 311

Query: 320 MGCDIAGEGGDKTVVVF 336
            G D++    D T  V 
Sbjct: 312 GGLDLSST-NDITAFVL 327


>gi|66395816|ref|YP_240151.1| ORF009 [Staphylococcus phage EW]
 gi|62636238|gb|AAX91349.1| ORF009 [Staphylococcus phage EW]
          Length = 421

 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/266 (9%), Positives = 76/266 (28%), Gaps = 28/266 (10%)

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
           +++  +  R  M+ + +  ++  L  +++ ++   +      H F+++   +        
Sbjct: 46  IIITQLIMRYPMNAVVVRKTDNTLATSVFEQIKWAIEQQKVSHLFKVKVSPM-------- 97

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSILGFF 215
                +    +   I  R          +         ++ +E A    +    +I    
Sbjct: 98  ----EITYMPRGNRIIFRGAQNPERLKSLKDSRFPFSIMWIEELAEFKTEDEVTTITNSM 153

Query: 216 ----TELNPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDWKRYQIDTRTVEGIDSGFHEG 268
                +      +  + N   R   W    +      ++   +         I   F + 
Sbjct: 154 LRGELDEGLFYKFFFSYNPPKRKQSWVNKKYESSFQPDNTFVHHSTYLDNPFIAKQFIDE 213

Query: 269 IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEG 328
             +    +    R E LG+         +P N ++     + +   +  +    D  G  
Sbjct: 214 AEAAKERNELRYRWEYLGEAIGSG---VVPFNNLQIEKIPDELFRSFDNIRNAVDF-GYA 269

Query: 329 GDKTVVVFRRGN----IIEHIFDWSA 350
            D    V    +    +I  + ++  
Sbjct: 270 TDPLAFVRWHYDKKKRVIYAVDEYYG 295


>gi|257784380|ref|YP_003179597.1| hypothetical protein Apar_0576 [Atopobium parvulum DSM 20469]
 gi|257472887|gb|ACV51006.1| hypothetical protein Apar_0576 [Atopobium parvulum DSM 20469]
          Length = 496

 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 62/228 (27%), Gaps = 21/228 (9%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
           +  R  GK+       +W  +   GM ++  A++   +    +  +    +         
Sbjct: 68  AKPRQNGKSFAARLYGIWCAAIC-GMDVVYSAHNADTVDE-FFDMIVNLFTDDETYPDLA 125

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT--FVGPHNTHGMAVFNDEA 200
              L  +         +Q +  D   Y    R     +  T             +  DEA
Sbjct: 126 ELLLKAYRQPG-----KQYLLFDCGCYKSGKRAIGRLKFSTRTTSKARGGTRSLIIIDEA 180

Query: 201 SGTPDIINKSILGFFT-ELNPNRFWIMTSNTRRLN-------GWFYDIFNIPLEDWKRYQ 252
               D    +IL   +   + +   I                       +    +    +
Sbjct: 181 QELTDAQLNAILPTVSASKDGSPQVIYIGTPPDPTCRGTVFKRMHDTAHSDDPGEAWWLE 240

Query: 253 IDTRTVEGIDSGFHEGI----ISRYGLDSDVARIEILGQFPQQEVNNF 296
              ++V   D+   E +     +   L S +    +L ++ Q   + F
Sbjct: 241 WAAKSVPKEDTSDEEALDFAYETNPALGSRITERAVLNEWHQMTRDGF 288


>gi|217959638|ref|YP_002338190.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
           cereus AH187]
 gi|217067069|gb|ACJ81319.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
           cereus AH187]
          Length = 591

 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 37/323 (11%), Positives = 82/323 (25%), Gaps = 38/323 (11%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
             WQ   + ++    H +            I  GR  GKTT+ + +  + ++    PG  
Sbjct: 109 QPWQHFVIGSLYGWIHKDTGYRRFREGLIFI--GRKNGKTTMISGLSNYAVAKDNEPGAR 166

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK-- 167
           +  +AN++ Q    L+ E    +   P       ++            +E       K  
Sbjct: 167 VYVLANTKQQAGE-LFDESRAMVQKSPLLRKHLRENQKGIFHDKTHSKIEPRASDSKKLD 225

Query: 168 ---------HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--------KS 210
                          + +                M V+   A    +             
Sbjct: 226 GLNTHLGIFDEIHEFKNFKLINVIKKSRGARKQPMIVYITTAGYQLEGPLVQYYEIATDV 285

Query: 211 ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGII 270
           + G   +     F     N   +      I   P          +  +  +   ++    
Sbjct: 286 LEGVIDQDRKFYFMAEMDNVDEIENPELWIKANPN------MGVSLDLPSLIDDWNTDKH 339

Query: 271 SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLIMGCDIAGEGG 329
           +    +  + +      F   +  +F+    ++      +         + G D++    
Sbjct: 340 TDAEKNDWITKQF--NIFVDNDEMSFVGIEILKRNEGVIDIKGLTGKECVAGYDLSAT-E 396

Query: 330 DKTVVV----FRRGNIIEHIFDW 348
           D T          GN+      W
Sbjct: 397 DFTSACLEFPLDDGNVFVLSHSW 419


>gi|194015441|ref|ZP_03054057.1| phage terminase, large subunit, pbsx family [Bacillus pumilus ATCC
           7061]
 gi|194012845|gb|EDW22411.1| phage terminase, large subunit, pbsx family [Bacillus pumilus ATCC
           7061]
          Length = 437

 Score = 52.6 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 32/266 (12%), Positives = 73/266 (27%), Gaps = 41/266 (15%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           +  G G  K+   A  ++ L       + + I       + + ++ + + +S L   H  
Sbjct: 27  LVGGYGSSKSYHIALKLI-LKLLEEKRTALVIREVYDTHRESTFSLLQEIVSDLGIDHVV 85

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
           + +S  L            ++   +    +       ++P+        +   ++ +E S
Sbjct: 86  KCRSSPL------------ALTFRNGSSILFKGL---DKPEKLKSI--NNISMIWIEECS 128

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL---------------- 245
                  K +LG     +   + ++++N    + W Y  F                    
Sbjct: 129 EVSYEGFKELLGRLRHPSLPLYMMLSTNPVGQDNWTYRHFFRDEQLKRFVLDDETLYKKR 188

Query: 246 ----EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301
               +D   +         +   + E +      D D+ RI   G F         P   
Sbjct: 189 TVVIKDTYYHHSTAEDNLFLPKSYVEQLDELKEYDPDLYRIARKGYFGING-TKVFPQFE 247

Query: 302 IEEAMSREAIDDLYAP--LIMGCDIA 325
           +                    G D  
Sbjct: 248 VRSHSDVLEAIQQIDRPLKRAGMDFG 273


>gi|302381364|ref|YP_003817187.1| hypothetical protein Bresu_0249 [Brevundimonas subvibrioides ATCC
           15264]
 gi|302191992|gb|ADK99563.1| conserved hypothetical protein [Brevundimonas subvibrioides ATCC
           15264]
          Length = 556

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 79/277 (28%), Gaps = 29/277 (10%)

Query: 83  SAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
             GRG GKT   A  +         G  +  I  S   ++  +   VS            
Sbjct: 156 LGGRGAGKTLAGAVWLSDQAEALGAGGRLALIGGSLHDVREVMVEGVSGIA--------- 206

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
              +L+      +  +         +              +           A + DE  
Sbjct: 207 ---ALARWNDPKWGGVRPVFEPSRKRLVFPNGAVAQAFSAEDPEALRGPQFAAAWADEFC 263

Query: 202 GTPDIINKSILGFFTE--------LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253
             P        G                R  ++ + T +  G   D+   P    + +  
Sbjct: 264 AWPRGGRGGRGGPGATLALLRMGLRLGERPRLVVTTTPKPIGALRDLRAEP-GLVQTHAA 322

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
                + + +GF EG+   YG     A  E+ G+  +Q   +      +  A  R  ++ 
Sbjct: 323 TRDNADHLAAGFVEGLERLYGGTRKAA-QELEGRVVEQ-EGSLFTAEMMGRA--RGVLEG 378

Query: 314 LYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFD 347
            +  +++  D    AG      VV  R G+    + D
Sbjct: 379 SFDRIVVAIDPTTTAGGNACGIVVAGRVGDRAHVLAD 415


>gi|324325093|gb|ADY20353.1| phage terminase, large subunit, PBSX family [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 434

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 81/287 (28%), Gaps = 27/287 (9%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
           F+E +    +      +   ++      RG  K+      +   +   P  +I+ +    
Sbjct: 16  FLEVIGKGYNR--FWHSKNFYRVC-KGSRGSKKSKTTVINLTKRLMQYPWANILVVRRFS 72

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
             LK + + +    ++ L  +H F+                   +        I  R   
Sbjct: 73  NTLKQSCYTDFKWAVNRLKVKHLFKFNESM------------PEITYIPTGQKILFRGLD 120

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIIN-----KSILGFFTELNPNRFWIMTSNTRR 232
           +    T +          + +EA    D        +SI G +   +  +   +T N   
Sbjct: 121 DPLKITSITVDVGALCWAWFEEAYEIEDQHKFETVVESIRGSYDSPDFFKQITVTFNPWS 180

Query: 233 LN----GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
            N     +F+D      + +       +  E +D        S Y  +   ARI   G++
Sbjct: 181 ENHWLKSYFFDEETQAYDTF-AITTTYKCNEWLDEQDRARYESLYTKNPRRARIVCDGEW 239

Query: 289 PQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335
                     +  + +    E           G D      D T + 
Sbjct: 240 -GVADGLVYENFQVRDFDIDEIRQRKDVQSAFGLDFGYT-NDPTALC 284


>gi|126461063|ref|YP_001042177.1| phage terminase [Rhodobacter sphaeroides ATCC 17029]
 gi|126102727|gb|ABN75405.1| phage Terminase [Rhodobacter sphaeroides ATCC 17029]
          Length = 535

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/327 (13%), Positives = 88/327 (26%), Gaps = 61/327 (18%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS---TRPGM 108
             WQ   +  +    HS+       + +  +   RG  KT L A + L  +      PG 
Sbjct: 45  DPWQERIVRRIYGPRHSDGTR---IVRRVVLLLPRGNRKTALCAALTLLHLIGPEREPGG 101

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            I+  A++  Q    L+ E +  +               L       E + +    D   
Sbjct: 102 LIVSAASAHEQAME-LFNEAALIVQ----------NDQRLAKRLSVREYVSKISFKDMGT 150

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD----IINKSILGFFTELNPNRFW 224
             I                H      V  DE             +++     ++      
Sbjct: 151 RYIA-------VASDGKVQHGKTPNVVIADELHAWEGRAGLRQWEALDSALVKVPGTLMI 203

Query: 225 IMTSNTRRLNGWFYD----------------------IFNIPLEDWKRYQIDTRTVEGID 262
           + +++ R      +                           P +DW    +      G+ 
Sbjct: 204 VASTSGRGQENLAWQTVDYAIKVQKGEIDDPATLPVIFMAEPEDDWTDEDLWRLVNPGLA 263

Query: 263 S------GFHEGIISRYGL--DSDVARIEILGQFPQQEVNNFIPHNYIEE-AMSREAIDD 313
                  GF +          + D      L ++  Q  + F+  +  +E A   +  + 
Sbjct: 264 HGYPDIEGFRDKARKAVHSPFERDSFLQFNLNRWLDQTTSPFVEMHVYDEGAHEVDLEEL 323

Query: 314 L--YAPLIMGCDIAGEGGDKTVVVFRR 338
               AP  +G D++       VV   +
Sbjct: 324 EMVQAPCWLGVDLSKNEDLTCVVAAWQ 350


>gi|49186804|ref|YP_030056.1| prophage LambdaBa02, terminase, large subunit [Bacillus anthracis
           str. Sterne]
 gi|165872202|ref|ZP_02216841.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
           anthracis str. A0488]
 gi|167633590|ref|ZP_02391914.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
           anthracis str. A0442]
 gi|167640991|ref|ZP_02399248.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
           anthracis str. A0193]
 gi|170688734|ref|ZP_02879938.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
           anthracis str. A0465]
 gi|170705897|ref|ZP_02896360.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
           anthracis str. A0389]
 gi|177654326|ref|ZP_02936255.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
           anthracis str. A0174]
 gi|190565905|ref|ZP_03018824.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
           anthracis Tsiankovskii-I]
 gi|227813137|ref|YP_002813146.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
           anthracis str. CDC 684]
 gi|229600357|ref|YP_002868188.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
           anthracis str. A0248]
 gi|254683650|ref|ZP_05147510.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
           anthracis str. CNEVA-9066]
 gi|254721486|ref|ZP_05183275.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
           anthracis str. A1055]
 gi|254735994|ref|ZP_05193700.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
           anthracis str. Western North America USA6153]
 gi|254743886|ref|ZP_05201569.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
           anthracis str. Kruger B]
 gi|254754336|ref|ZP_05206371.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
           anthracis str. Vollum]
 gi|254757972|ref|ZP_05209999.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
           anthracis str. Australia 94]
 gi|49180731|gb|AAT56107.1| prophage LambdaBa02, terminase, large subunit, putative [Bacillus
           anthracis str. Sterne]
 gi|164712149|gb|EDR17687.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
           anthracis str. A0488]
 gi|167511041|gb|EDR86430.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
           anthracis str. A0193]
 gi|167530996|gb|EDR93683.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
           anthracis str. A0442]
 gi|170129437|gb|EDS98301.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
           anthracis str. A0389]
 gi|170667250|gb|EDT18009.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
           anthracis str. A0465]
 gi|172080816|gb|EDT65897.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
           anthracis str. A0174]
 gi|190562824|gb|EDV16790.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
           anthracis Tsiankovskii-I]
 gi|227005131|gb|ACP14874.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
           anthracis str. CDC 684]
 gi|229264765|gb|ACQ46402.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
           anthracis str. A0248]
          Length = 590

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/323 (11%), Positives = 82/323 (25%), Gaps = 38/323 (11%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
             WQ   + ++    H +            I  GR  GKTT+ + +  + ++    PG  
Sbjct: 108 QPWQHFVIGSLYGWIHKDTGYRRFREGLIFI--GRKNGKTTMISGLSNYAVAKDNEPGAR 165

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK-- 167
           +  +AN++ Q    L+ E    +   P       ++            +E       K  
Sbjct: 166 VYVLANTKQQAGE-LFDESRAMVQKSPLLRKHLRENQKGIFHDKTHSKIEPRASDSKKLD 224

Query: 168 ---------HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--------KS 210
                          + +                M V+   A    +             
Sbjct: 225 GLNTHLGIFDEIHEFKNFKLINVIKKSRGARKQPMIVYITTAGYQLEGPLVQYYEIATDV 284

Query: 211 ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGII 270
           + G   +     F     +   +      I   P          +  +  +   ++    
Sbjct: 285 LEGVIDQDRKFYFMAEMDSVDEIENPELWIKANPN------MGVSLDLPSLIDDWNTDKH 338

Query: 271 SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLIMGCDIAGEGG 329
           +    +  + +      F   +  +F+    ++      +         + G D++    
Sbjct: 339 TDAEKNDWITKQF--NIFVDNDEMSFVGIEILKRNEEVIDIKGLAGKECVAGYDLSAT-E 395

Query: 330 DKTVVV----FRRGNIIEHIFDW 348
           D T          GN+      W
Sbjct: 396 DFTSACLEFPLDDGNVFVLSHSW 418


>gi|319440826|ref|ZP_07989982.1| Phage terminase large subunit [Corynebacterium variabile DSM 44702]
          Length = 400

 Score = 52.3 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 70/240 (29%), Gaps = 23/240 (9%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANS-ETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
             GKT     +ML  I+   G + + I       +   ++  +       P R   + + 
Sbjct: 26  RSGKTFAWILLMLEEIANYQGHAAMVIVGKNLGSIFRNVFEPIDSVPEFAPARAHIQYRQ 85

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
            S     +   +                         +            + DE +    
Sbjct: 86  GSSTAIIFGKRV----------------HVIGANDAGSESRIRGMTVGRAWCDELTVLHQ 129

Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED--WKRYQIDTRTVEGIDS 263
              K +L   +E         T+N    + W    +   +E+  W  +         ++ 
Sbjct: 130 AFFKQLLARMSEKGAKV--FATTNPDSPSHWLKKEYLDRIEEIPWSYHHFTMDDNPSLED 187

Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
            + + + + Y       R  ILGQ+   E   +   +     ++ E + D+   L +G D
Sbjct: 188 EYKDALKAEYTG--LWYRRFILGQWVSAEGAIYDMWDDESMVVAPEDMPDMQRTLALGID 245


>gi|302873679|ref|YP_003842312.1| Terminase [Clostridium cellulovorans 743B]
 gi|307686597|ref|ZP_07629043.1| Terminase [Clostridium cellulovorans 743B]
 gi|302576536|gb|ADL50548.1| Terminase [Clostridium cellulovorans 743B]
          Length = 514

 Score = 52.3 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/325 (10%), Positives = 84/325 (25%), Gaps = 55/325 (16%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL-ISTRPGMSII 111
            WQ   +  +      +      T +   +   +  GK+ + A + L+L        + +
Sbjct: 33  PWQDRIIRDLFGTVKEDGFRQYNTAY---VEIPKKNGKSEIAAALALYLTCGDNEWGAEV 89

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
               ++ Q  + ++      +   P                   + ++  +      Y  
Sbjct: 90  YGCAADRQQASIVFDVAVDMVDQCP----------------ALKKRIKPIISQKRLVYMP 133

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP-DIINKSILGFFTELNPNRFWIMTSNT 230
               Y     + +   H  +   V  DE    P   +   +     +      + + +  
Sbjct: 134 LGSFYQVLSAEAY-TKHGLNVHGVIFDELHAQPGRELYDVMTKGSGDARKQPLFFLITTA 192

Query: 231 RRLNGWFYDIFNIPLEDW---------------------------KRYQIDTRTVEGIDS 263
                      +   +D                              Y+ +      ID 
Sbjct: 193 GNDRNSICYEVHQKADDILRGKKFDPTFYPVIYGIKDDDNWQDEANWYKANPSLGHTIDI 252

Query: 264 GFHEGIISRYGLDS---DVARIEILGQFPQQEVNNFIPHNYIEEA-MSREAIDDLYAPLI 319
                 I     +    ++ R   L Q+ +Q +  ++P +  ++   + +          
Sbjct: 253 EKVRTAILSAKENPAEENIFRQLRLNQWVKQSI-RWMPMDVWDKCSFAVDIEKLRGRECY 311

Query: 320 MGCDIAGEGGDKTVVVFRRGNIIEH 344
            G D++    D T  V      I+ 
Sbjct: 312 GGLDLSST-NDITAFVLIFPPTIDD 335


>gi|120611024|ref|YP_970702.1| putative terminase large subunit protein [Acidovorax citrulli
           AAC00-1]
 gi|120589488|gb|ABM32928.1| putative terminase large subunit protein [Acidovorax citrulli
           AAC00-1]
          Length = 527

 Score = 52.3 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/384 (13%), Positives = 100/384 (26%), Gaps = 90/384 (23%)

Query: 9   QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFS-QPHRWQLEFMEAVDVHCH 67
              + EL E L   +  L F   + +    G   +       +P+R Q  F+  +     
Sbjct: 13  PATDAELAECLADPQWRL-FSGVLYKIMVKGDGDEDAAVLPFKPNRAQRRFIARLWH--- 68

Query: 68  SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127
                      +  I   R +G TTL A M L             +A  + +    ++  
Sbjct: 69  -----------RNLILKARQLGFTTLIAIMWLDHALFNDDQRCGIVA-QDREAAEAIFR- 115

Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187
                     +  F  Q+L       +    + +  +   H   + R  +  R  T    
Sbjct: 116 ---------DKVKFAYQNLPEALRERFPLARDSASELLFAHNNSSVRVATSLRGGTIHRL 166

Query: 188 HNTHGMAVFNDEASGT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243
           H          E        PD   + + G    +  N   ++ S      G FY +   
Sbjct: 167 H--------VSEFGKICAKYPDKAQEVVTGSIPAVPTNGVLVIESTAEGREGPFYAMTQR 218

Query: 244 PL-----------EDWKRYQIDTRTVE------------GIDSGFHEGII---------- 270
                        +D++ +                      D  + + I           
Sbjct: 219 SQGMHLSKADLTPKDYRFHFYAWWQEPKYRLPVGSVDLTDDDHEYFDEIEGAMSCVIDEE 278

Query: 271 ----------SRYGLDSDVARIEILGQ----FPQQEVNNFIPHNY--IEEAMSREAIDDL 314
                     + +   ++    E        F      ++   +   + +     A+   
Sbjct: 279 QRTWYVATRDADFSGAAEKMWQEYPSTPAEAFQISTEGHYYAKDMAAVRKRGGILAVPVA 338

Query: 315 YAPLIMGCDIAGEGGDKTVVVFRR 338
            +P+    DI     D T + F +
Sbjct: 339 DSPVYTFWDIGN--SDGTAIWFMQ 360


>gi|65321283|ref|ZP_00394242.1| COG4626: Phage terminase-like protein, large subunit [Bacillus
           anthracis str. A2012]
          Length = 591

 Score = 52.3 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/323 (11%), Positives = 82/323 (25%), Gaps = 38/323 (11%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
             WQ   + ++    H +            I  GR  GKTT+ + +  + ++    PG  
Sbjct: 109 QPWQHFVIGSLYGWIHKDTGYRRFREGLIFI--GRKNGKTTMISGLSNYAVAKDNEPGAR 166

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK-- 167
           +  +AN++ Q    L+ E    +   P       ++            +E       K  
Sbjct: 167 VYVLANTKQQAGE-LFDESRAMVQKSPLLRKHLRENQKGIFHDKTHSKIEPRASDSKKLD 225

Query: 168 ---------HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--------KS 210
                          + +                M V+   A    +             
Sbjct: 226 GLNTHLGIFDEIHEFKNFKLINVIKKSRGARKQPMIVYITTAGYQLEGPLVQYYEIATDV 285

Query: 211 ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGII 270
           + G   +     F     +   +      I   P          +  +  +   ++    
Sbjct: 286 LEGVIDQDRKFYFMAEMDSVDEIENPELWIKANPN------MGVSLDLPSLIDDWNTDKH 339

Query: 271 SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLIMGCDIAGEGG 329
           +    +  + +      F   +  +F+    ++      +         + G D++    
Sbjct: 340 TDAEKNDWITKQF--NIFVDNDEMSFVGIEILKRNEEVIDIKGLAGKECVAGYDLSAT-E 396

Query: 330 DKTVVV----FRRGNIIEHIFDW 348
           D T          GN+      W
Sbjct: 397 DFTSACLEFPLDDGNVFVLSHSW 419


>gi|325107749|ref|YP_004268817.1| phage terminase-like protein protein large subunit-like protein
           [Planctomyces brasiliensis DSM 5305]
 gi|324968017|gb|ADY58795.1| phage terminase-like protein protein large subunit-like protein
           [Planctomyces brasiliensis DSM 5305]
          Length = 442

 Score = 52.3 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/300 (14%), Positives = 87/300 (29%), Gaps = 38/300 (12%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
            P   +  +   RG  KTT  A  +LW++   P       A ++ +    +   + +   
Sbjct: 20  EPPFQRAYLERPRGHSKTTDTAVQLLWILQNSPTRVEGLAAAADLEQGLLIRNAMQRISE 79

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
           +                     +L+ +   + ++         S +   ++         
Sbjct: 80  VNGD---------------LCGQLVFRQQFVQNEATGSRLTVISSDVQSSW----GALPD 120

Query: 194 AVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL--EDWK 249
            V  DE S    PD+    I     +       ++ +N     GW +++       + W 
Sbjct: 121 FVICDELSHWEKPDLWYSLISSAAKKP--RCLVVVLTNAGVGRGWQFEVREAARKSDRWY 178

Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR- 308
              +D      I + + E         + V       ++ QQ   +F+     E      
Sbjct: 179 FASLDGCQAPWIAADWLEEQRQLL--PAPVFDRLWNNRW-QQSDGSFVSLAEAEACRDEG 235

Query: 309 ---EAIDDLYAPLIMGCDIAGEGGDKTVVVF--RRGNIIEHIFDWSAKLIQETNQEGCPV 363
              +             D A +  D TV V   R G  +  +      ++  T     PV
Sbjct: 236 LNYQEEGRPGRRYFAAIDYAEK-RDYTVGVVLHRDGTRL-VVD--RMDVVCPTADAPVPV 291


>gi|94694835|gb|ABF47064.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
           5]
          Length = 674

 Score = 52.3 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 18/175 (10%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GKT     ++ +L+    G+SI  +A+ +  +   +  EV         RH F   
Sbjct: 213 PRRHGKTWFIIPIISFLLKHMIGISIGYVAHQKH-VSQFVLKEVE-----FRCRHTFA-- 264

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                   +  E  +  + ID +    T    S    ++       +   +  DEA    
Sbjct: 265 ------RDYVVENKDNVISIDHRGPKSTALFASCYNTNS---IRGQNFHLLLVDEAHFIK 315

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTV 258
                +ILGF  +      +I ++NT      F   + N P +            
Sbjct: 316 KEAFNTILGFLAQNTTKIIFISSTNTTSDATCFLTRLNNAPFDMLNVVSYVCEEH 370


>gi|85716583|ref|ZP_01047553.1| phage terminase, large subunit, putative [Nitrobacter sp. Nb-311A]
 gi|85696584|gb|EAQ34472.1| phage terminase, large subunit, putative [Nitrobacter sp. Nb-311A]
          Length = 512

 Score = 52.3 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/326 (11%), Positives = 74/326 (22%), Gaps = 57/326 (17%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           +G  L    +   +Q +F+  +  +                    R  GKT   A ++L 
Sbjct: 24  EGGLLGKPIKLLPFQRQFILDIYDNPAGTSRAYLSMA--------RKNGKTATIACLLLA 75

Query: 101 LI---STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
            +          I+  A +  Q                 +  W  +           A  
Sbjct: 76  HLVGPEAYQNSRIVSGAQTRNQAAEVF------------NYAWKMVMQSPELSKIIKATP 123

Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT---PDIINKSILGF 214
            E+ +     +      +          G H    +    DE        D   ++I   
Sbjct: 124 SEKKLTGLPMNVEYKAISADA------KGAHGGSPIVAILDEVGQIKGPTDAFVEAIETS 177

Query: 215 FTELNPNRFWIMTSNTRRLNGWFYDIFNIP----------------------LEDWKRYQ 252
               +     I  S     +   +  +                          +      
Sbjct: 178 QGAYDGKALLIAISTQASTDNDLFSRWLDDAASSQDPRIVSHLHAAPADCDLSDRAAWQA 237

Query: 253 IDTRTVEGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNN-FIPHNYIEEAMSREA 310
            +            E +  +     +D      L    + E N  F+  +      +   
Sbjct: 238 ANPAMGVFRSVTDIEDMARKAERLPTDENSFRWLFLNQRVEANAPFLSASVWRSCNAAVV 297

Query: 311 IDDLYAPLIMGCDIAGEGGDKTVVVF 336
                 P+  G D++    D T +V 
Sbjct: 298 ESFEGLPVYGGLDLSEV-NDLTALVL 322


>gi|238062875|ref|ZP_04607584.1| phage terminase [Micromonospora sp. ATCC 39149]
 gi|237884686|gb|EEP73514.1| phage terminase [Micromonospora sp. ATCC 39149]
          Length = 428

 Score = 52.3 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/269 (9%), Positives = 71/269 (26%), Gaps = 26/269 (9%)

Query: 87  GIGKTTLNA-WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
             GKT  +   +++ + +      ++    +   +   +++ +       P  H  +   
Sbjct: 35  RSGKTVASLLRLLMAIAAAPSSGRVLLFGKTRESVNRNVFSVLGDPALFGPLAHLVKYNP 94

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
            +   S    E+                                      + DE +  P+
Sbjct: 95  GAATGSILGREVDVL----------------GANDAKAEPKVRGMTLCIAYGDELTTIPE 138

Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT--RTVEGIDS 263
                +L   +          T+N    N W    + +   +       +  R    +D 
Sbjct: 139 AFFTQVLARLSVAGAQL--FGTTNPDSPNHWLRKKYLLRAGELNLRTWHSTLRDNPHLDP 196

Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
            +   + + Y       +  ILG +  Q         + E+      +  ++  + +G D
Sbjct: 197 QYVRNLTTEYVG--LWYKRFILGAWV-QAEGAVFDM-WDEDRHVIPVLPAIHRWISLGID 252

Query: 324 IA-GEGGDKTVVVFRRGNIIEHIFDWSAK 351
                     ++   +   +    +W   
Sbjct: 253 YGTRNATAALILGVGQDGRLHLTHEWRHD 281


>gi|321157006|emb|CBW38994.1| Phage terminase large subunit [Streptococcus phage 040922]
          Length = 432

 Score = 52.3 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 82/271 (30%), Gaps = 23/271 (8%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
            + ++++  +   RG  K+   A   +  +      +++ I       K + + +     
Sbjct: 29  HSRSLYRV-VKGSRGSKKSKTTALNYVVRLLKYSWANLLVIRRYSNTNKQSTYTDFKWAC 87

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
           ++L   H F+                   + I +    I  R   +E   T +       
Sbjct: 88  NVLGVTHLFKFNES------------LPEITIKATGQKILFRGLDDELKITSITVDVGSL 135

Query: 193 MAVFNDEASGTPDI-----INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NIP 244
              + +EA           + +SI G     +  +   +T N      W   +F      
Sbjct: 136 CWAWFEEAYQIETEDKFSTVVESIRGSLDVPDFFKQITVTFNPWNERHWLKRVFFDEETR 195

Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE 304
             D        +  E +D    +     Y  +   ARI   G++          +  +++
Sbjct: 196 RADTFATTTTYKCNEWLDEVDIKRYEDLYHTNPRRARIVCDGEW-GVAEGLIYENVTVKD 254

Query: 305 AMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335
               E + D    L +G D  G   D T + 
Sbjct: 255 FNKDELLQDSANKLCIGLDF-GFTHDPTALC 284


>gi|154487553|ref|ZP_02028960.1| hypothetical protein BIFADO_01408 [Bifidobacterium adolescentis
           L2-32]
 gi|154084071|gb|EDN83116.1| hypothetical protein BIFADO_01408 [Bifidobacterium adolescentis
           L2-32]
          Length = 537

 Score = 52.3 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/323 (10%), Positives = 76/323 (23%), Gaps = 62/323 (19%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR------- 105
            WQ   +                   K  +   R  GKTTL   +  W +          
Sbjct: 56  PWQCWLLVHALELLEDGSYRF----RKVIVLVARQNGKTTLMGVLAAWWLFVDSNKHPDR 111

Query: 106 -PGMSIICI-ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
            P +  + + A          +++V +W +  P                     + Q   
Sbjct: 112 VPPVKFLVVGAAQTLDNAKGPYSQVKEWCNPRPE------TDEESELVVPELADMTQKFV 165

Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNR 222
             +    I  ++ ++                V  DE      D    ++      +  ++
Sbjct: 166 NTNGEEAIVLKSKAKYIVRADKNIRAKSAARVIFDELREQHNDDGWNAVSQTTKAVWSSQ 225

Query: 223 FWI--------------------------------------MTSNTRRLNGWFYDIFN-- 242
            W                                         +N  +   + Y  ++  
Sbjct: 226 LWGISNAGDYRSVALRKQVDKGRKLVDAWKQYVADGVDAAEAFANGEQDGSFGYFEWSAP 285

Query: 243 --IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
              P++D    +    ++               G+     R E+L Q+   ++  +I   
Sbjct: 286 DKCPVDDADAIRQANPSLGYGPMTVASVRSDIDGMTEAAFRTEVLCQWVTADIVPYINPK 345

Query: 301 YIEEAMSREAIDDLYAPLIMGCD 323
                    +       +++  D
Sbjct: 346 LWAYGTDNASCIPADNRVVLAVD 368


>gi|29566981|ref|NP_818544.1| gp6 [Mycobacterium phage Barnyard]
 gi|29425706|gb|AAN02060.1| gp6 [Mycobacterium phage Barnyard]
          Length = 581

 Score = 52.3 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 58/241 (24%), Gaps = 19/241 (7%)

Query: 31  FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
           +V     W      +     P + +      V       +            + GR +GK
Sbjct: 7   YVEYVSKWTYLDAEVL----PDK-RSGGFRKVFDPHSGQLEFMEDDAQYLCATCGRRMGK 61

Query: 91  TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
           +   A   +           +     +   +   W  V    S                 
Sbjct: 62  SAGIAHEFIPEAMI---TKEMATTLLDDGKRREFWT-VGPNYSDAEKPFRVFWNKCRALG 117

Query: 151 SGWYAELLEQSMGIDS--KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208
             +        +               YS +               V  +EA+   +++ 
Sbjct: 118 IPFDKPGTYFDIKGGDMTVSLWDGAFIYSAKSSAVPERLVGEGLTGVHMEEAAKQKEVVW 177

Query: 209 -KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE----DWKRYQIDTRTVEGIDS 263
            + I+    +      W   + T     W+YD+    L     +W  ++I +     + +
Sbjct: 178 KQMIMPTLMDFGG---WAKFTTTPEGKNWYYDLHQKALRPSTLNWSAHRIPSWRNPHVYT 234

Query: 264 G 264
            
Sbjct: 235 E 235


>gi|9628694|ref|NP_043560.1| terminase [Lactococcus phage c2]
 gi|1146310|gb|AAA92191.1| terminase [Lactococcus phage c2]
          Length = 518

 Score = 52.3 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/293 (12%), Positives = 81/293 (27%), Gaps = 46/293 (15%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
            +  GR   K+ L+  + L  +     P   I  +A  + Q +  L        +     
Sbjct: 80  VVIVGRSNAKSILDVMIALIELFLFPKPNSVIALMATKKDQAEKILMKHFRAMGN----- 134

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                Q   ++      +L ++ + +       +  T                   V  D
Sbjct: 135 ----CQGTIINKFKNQFKLNKEQILVKDNSILKSKGTEISIYASNEDTLDGGREQLVIID 190

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSN----------------TRRLNGWFYDIFN 242
           E          +I     +     F   T+N                  + + + + +F 
Sbjct: 191 EFGAFKKNPLITIRQGLRKNKGTLFISTTNNVIRGGAYDDELESWKEWVKDDDFSHWVFY 250

Query: 243 IPLEDWKRYQIDTRTV------------EGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290
             L+D+   +  ++ +            E I   F   I +   +   + +   L     
Sbjct: 251 YALDDYDEVKDSSKYIKANPALGYTLSLEDIQKDFIGAIGNPVKMAKIITKRFNLSM--- 307

Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPLI-MGCDIAGEGGDK-TVVVFRRGNI 341
            +         +++ +      D    L+ +G D +  G    TV+ +R    
Sbjct: 308 TDSTTIFSKQLVDKCLV--PPLDFSGRLVAIGSDFSVRGDVWGTVIGYRENGH 358


>gi|269978258|ref|ZP_06185208.1| putative phage terminase, large subunit [Mobiluncus mulieris 28-1]
 gi|269933767|gb|EEZ90351.1| putative phage terminase, large subunit [Mobiluncus mulieris 28-1]
          Length = 477

 Score = 52.3 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/314 (11%), Positives = 86/314 (27%), Gaps = 64/314 (20%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             WQ   +            +     ++ AI   R  GK ++   + L  +       II
Sbjct: 24  DPWQEYALNK----ALGVGEDGKWAAYEVAIVTQRQNGKGSILEALQLAALFLWGERLII 79

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A+     + +        +  L          LS   +  Y    ++ + + + +   
Sbjct: 80  HSAHEFATAQESFQR-----VRSLIEG----CGVLSREVAHIYTSNGKEGIKLKNGNRLQ 130

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF---TELNPNRFWIMTS 228
                               G  +  DEA   P     +++      ++    + W  +S
Sbjct: 131 FKARSR-------KSARGFTGSRIIFDEALFLPRQFLGAVMPTMAAVSKTGNPQLWYTSS 183

Query: 229 N------------TRRLNGW--------------FYDIFNIPLEDWKRYQIDTRTVE--- 259
                        TR + G               + ++       W   +   R      
Sbjct: 184 TGLADSEVLEGLRTRAVTGENAGSLCYLEWSTKSWDEMTVSERSHWDDDRAKWRADPEVW 243

Query: 260 ---------GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
                     I + + +  ++    D D    E LG + +   ++ IP +  +   + ++
Sbjct: 244 REANPAFEIRISADYMQKELASEMSDID-FEREHLGIWERIGGDSLIPVDVWQSLANEKS 302

Query: 311 IDDLYAPLIMGCDI 324
                  +++  D+
Sbjct: 303 QP--GENIVLALDV 314


>gi|75675808|ref|YP_318229.1| phage terminase [Nitrobacter winogradskyi Nb-255]
 gi|74420678|gb|ABA04877.1| phage Terminase [Nitrobacter winogradskyi Nb-255]
          Length = 537

 Score = 52.3 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 47/367 (12%), Positives = 97/367 (26%), Gaps = 67/367 (18%)

Query: 27  SFKNFVMRFFPW-----GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81
               +  R   W       K     H  Q   WQ   +  +    H +       +    
Sbjct: 15  DPFGYGERAVQWLRRLKHPKNPARGHPFQVDPWQERIIRKLYGPRHEDGRRVVRRLVL-- 72

Query: 82  ISAGRGIGKTTLNAWMMLWLISTR---PGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               RG  KT+L   + L  +      PG  ++  A++  Q    L+ EV+  +     R
Sbjct: 73  -LLPRGNRKTSLCGAITLLHLIGPEKLPGNLVVSAASAHEQAME-LFNEVAMIVQH--DR 128

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
              +  ++                   S       R+            H      V  D
Sbjct: 129 RLEKHLAVR---------------EYTSSITFKAQRSRYIAVASDGKVQHGKTPNVVIAD 173

Query: 199 EASGTP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD--------------- 239
           E          +  +++     ++      + T++ R      +                
Sbjct: 174 ELHAWEGRAGRVQWEALDSALVKVPDTLMIVATTSGRGQENLAWKTIDYAIKVQKGEIDD 233

Query: 240 -------IFNIPLEDWKRYQIDTRTVEGIDSGFHE--------GIISRYGLDSDVARIEI 284
                        +DW+   +      G+  G+ +                D D      
Sbjct: 234 PATLPVVFMAEEGDDWRDEAVWHALNPGMRHGYPDLTSYRDKAQKAINSPSDRDSFLQFN 293

Query: 285 LGQFPQQEVNNFIPHNYIEE-AMSREAIDDLYAPLIMGCDIAGEGGDKTVV--VFRRGNI 341
           L ++     + F+     ++ A + +  +       +G D++    D T V   +R G+ 
Sbjct: 294 LNRWLDHSTSPFVEMLVYDQGARAIDLDELKGEQCWIGVDLS-SNSDLTAVVACWRDGDD 352

Query: 342 IEHIFDW 348
              +  W
Sbjct: 353 GYQVQPW 359


>gi|45190389|ref|NP_984643.1| AEL218Wp [Ashbya gossypii ATCC 10895]
 gi|44983285|gb|AAS52467.1| AEL218Wp [Ashbya gossypii ATCC 10895]
          Length = 1471

 Score = 52.3 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 2/118 (1%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKTTL A ++   I  R G +++  + + + + N L   +   L +    +   +   
Sbjct: 1085 GTGKTTLIAEII--RILARNGKNVLLTSYTHSAVDNILLKLLDSELQIARLGYKHRVHPG 1142

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
              H      ++      + S        T      D+ +     +   V  DEAS   
Sbjct: 1143 VRHLVQSLEDVQTHEELVSSVDEFQVIATTCLGVNDSLLALRTKNFDYVILDEASQVS 1200


>gi|281491951|ref|YP_003353931.1| phage terminase large subunit [Lactococcus lactis subsp. lactis
           KF147]
 gi|281375660|gb|ADA65164.1| Phage protein, terminase large subunit [Lactococcus lactis subsp.
           lactis KF147]
          Length = 656

 Score = 52.3 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/332 (13%), Positives = 105/332 (31%), Gaps = 47/332 (14%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
                   ++   WQ +F+  + +   ++      T+   ++S  RG GKT + A +M++
Sbjct: 105 PNVDTGEPTELMPWQ-KFIMCMLIGWRNSEGGKRFTVAIISVS--RGQGKTYILAILMVY 161

Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
                     + ++N +  + +  + + SK    +       ++            L ++
Sbjct: 162 SFLFE----SLGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDR 217

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTEL 218
           S+  D                +      + H      DE       + I+K + G     
Sbjct: 218 SILNDEVVMKKMNNKIRAISHEAGQYD-SFHFTTAIFDEIGEVTNREKISKIVSGQVLVK 276

Query: 219 NPNRFWIMTSNTRRLNGWFYDI----FNIPLEDWKRYQIDT------------------- 255
           N     I TS     +  F            +DW R    +                   
Sbjct: 277 NHQFVQISTSYPD-PSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETW 335

Query: 256 -RTVEGIDSGFHEGIISRYGLDSD----------VARIEILGQFPQQEVNNFIPHNYIEE 304
            ++   ++    + I+ +  +D              + + L  + QQ+V++++    +E+
Sbjct: 336 LKSNPLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLYDVEK 395

Query: 305 AMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
           A+  E          +G D +    D T + F
Sbjct: 396 AIIPEFSIH-GQRCYIGIDYSMM-SDNTAIAF 425


>gi|83313380|ref|YP_423644.1| hypothetical protein amb4281 [Magnetospirillum magneticum AMB-1]
 gi|82948221|dbj|BAE53085.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
          Length = 494

 Score = 52.3 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 44/153 (28%), Gaps = 13/153 (8%)

Query: 30  NFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIG 89
           NF    + W  +         P   Q+     +           +    +  + A R  G
Sbjct: 5   NFPEFAWIWNQR----LGLGTPRH-QVRMARWLAA-------RWHGRERELLLMAFRSSG 52

Query: 90  KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLH 149
           K+T+      W+++  P + I+ +A      K  +   V + +   P     + +     
Sbjct: 53  KSTIVGLFCAWVLACNPDLRIMVLAADLALAKKMV-RNVKRIIERHPLTQGLKPKRRDQW 111

Query: 150 PSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182
            +  +       +   S          +  R +
Sbjct: 112 AADQFTVNRPGELRDPSMVAKGIGANITGSRAE 144


>gi|306818632|ref|ZP_07452355.1| possible phage-related terminase [Mobiluncus mulieris ATCC 35239]
 gi|304648805|gb|EFM46107.1| possible phage-related terminase [Mobiluncus mulieris ATCC 35239]
          Length = 470

 Score = 51.9 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/314 (11%), Positives = 86/314 (27%), Gaps = 64/314 (20%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             WQ   +            +     ++ AI   R  GK ++   + L  +       II
Sbjct: 17  DPWQEYALNK----ALGVGEDGKWAAYEVAIVTQRQNGKGSILEALQLAALFLWGERLII 72

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A+     + +        +  L          LS   +  Y    ++ + + + +   
Sbjct: 73  HSAHEFATAQESFQR-----VRSLIEG----CGVLSREVAHIYTSNGKEGIKLKNGNRLQ 123

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF---TELNPNRFWIMTS 228
                               G  +  DEA   P     +++      ++    + W  +S
Sbjct: 124 FKARSR-------KSARGFTGSRIIFDEALFLPRQFLGAVMPTMAAVSKTGNPQLWYTSS 176

Query: 229 N------------TRRLNGW--------------FYDIFNIPLEDWKRYQIDTRTVE--- 259
                        TR + G               + ++       W   +   R      
Sbjct: 177 TGLADSEVLEGLRTRAVTGENAGSLCYLEWSTKSWDEMTVSERSHWDDDRAKWRADPEVW 236

Query: 260 ---------GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
                     I + + +  ++    D D    E LG + +   ++ IP +  +   + ++
Sbjct: 237 REANPAFEIRISADYMQKELASEMSDID-FEREHLGIWERIGGDSLIPVDVWQSLANEKS 295

Query: 311 IDDLYAPLIMGCDI 324
                  +++  D+
Sbjct: 296 QP--GENIVLALDV 307


>gi|269124153|ref|YP_003306730.1| type III restriction protein res subunit [Streptobacillus
           moniliformis DSM 12112]
 gi|268315479|gb|ACZ01853.1| type III restriction protein res subunit [Streptobacillus
           moniliformis DSM 12112]
          Length = 751

 Score = 51.9 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/251 (11%), Positives = 65/251 (25%), Gaps = 26/251 (10%)

Query: 70  VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129
               + +  K  + +  G GKT +    +   +       +      + +L+     ++ 
Sbjct: 20  KTTDSNSKPKIVMQSPTGSGKTIILVAYIEKYLDFHRDSVVCWFCPGKGELEEQSKEKME 79

Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189
           ++   L   + F++ +     +  Y    E     D+        +  +   +     HN
Sbjct: 80  RFAPTLKTGNVFDILNTGFESATTYFINWETITKKDNTAIRD---SERKNLFERISEAHN 136

Query: 190 THGMA-VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR-RLNGWFYD------IF 241
            +    V  DE                + +N      +++    R+ G FY+      I 
Sbjct: 137 RNLNFIVIIDEEH---QNNTSKAEDIISSINAKYEIRVSATPNKRVVGEFYEIPEIDVIN 193

Query: 242 NIPLEDWKRYQIDTRTVE-----GIDSGFHEGIISRYGLDSDVARIE-------ILGQFP 289
                 +        T              E         S     E       +L QFP
Sbjct: 194 EGLTTRFMYINDGLDTAHVENILHETDILLEKADEVRKKISRAYIDEKEDIRPLVLVQFP 253

Query: 290 QQEVNNFIPHN 300
               +      
Sbjct: 254 NLNDDLIEHVE 264


>gi|269120042|ref|YP_003308219.1| phage terminase, large subunit, PBSX family [Sebaldella termitidis
           ATCC 33386]
 gi|268613920|gb|ACZ08288.1| phage terminase, large subunit, PBSX family [Sebaldella termitidis
           ATCC 33386]
          Length = 430

 Score = 51.9 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 83/285 (29%), Gaps = 26/285 (9%)

Query: 77  IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136
            ++      R   K+   A   +  I   P  +++ +      LK++ + ++   ++ L 
Sbjct: 41  RYRVC-KGSRASKKSKTTAINFIHNIMKYPDANLLVVRKVFRTLKDSCFTDLKWAINRLK 99

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
            + ++E++   L  + +     +           IT  T                    +
Sbjct: 100 VKDYWEIKESPLEMT-YKPTGQKILFRGLDDPMKITSITVETGV-----------LCWCW 147

Query: 197 NDEASGTP-DIINKSILGFFTELNPNRF---WIMTSNTRRLNGWFYDIFNIPLE-DWKRY 251
            +EA     +     +        P        +T N      W    F    + D    
Sbjct: 148 IEEAYEITKEKDFDMLNESIRGEVPENLYKQITLTFNPWNQGHWLKKRFFDVEDSDIMAK 207

Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311
             + +  E +D    +        +    R+  LG++    V   I  N+ E     E +
Sbjct: 208 TTNYQCNEFLDESDKKLFEDMKVKNPRRYRVAGLGEW--GIVEGLIYENWEEREFDIEKL 265

Query: 312 DDLYAPLIM-GCDIAGEGGDKTVV---VFRRGNIIEHI-FDWSAK 351
                     G D      D + +      + N I ++  ++  K
Sbjct: 266 LSRTDIKTAFGLDFGYT-NDPSGLFCGAVDKANKIIYVFDEFYKK 309


>gi|145598321|ref|YP_001162397.1| hypothetical protein YPDSF_1024 [Yersinia pestis Pestoides F]
 gi|145210017|gb|ABP39424.1| hypothetical protein YPDSF_1024 [Yersinia pestis Pestoides F]
          Length = 496

 Score = 51.9 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/333 (12%), Positives = 84/333 (25%), Gaps = 78/333 (23%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  I   R +G TT    + L L           IA++       L+   +++       
Sbjct: 49  RNVILKARQLGFTTEVCIIQLDLAIFHR-KECALIAHTRPDA-ERLFRNKTQF------- 99

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
            +  M       +    E   + +  +    T++                     ++   
Sbjct: 100 AYQRMTDDIKKANPLVKETTSEYVFKNGGSVTVSTS------------FRGGTLYSLHVS 147

Query: 199 EASGT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-------- 246
           E        PD   + + G F  +       + S      G+F+D      +        
Sbjct: 148 EFGKICAKYPDKAKEIVTGAFEAVPLGGKITLESTAEGRAGYFFDYCQDAEKSQLQGKLL 207

Query: 247 ---DWKRYQIDTRTVEGIDSGFHE-----------GIISRYG----LDSDVARI---EIL 285
              DWK +               E            + +++G               + L
Sbjct: 208 SNLDWKFFFFSWWKNPQYAIDPVEALPQRLVDYFSEMEAKHGVQLNERQKAWYYAKEKTL 267

Query: 286 GQ-------------FPQQEVNNFIPHN---YIEEAMSREAIDDLYAPLIMGCDIAGEGG 329
           G              F Q     +               +  D+ + P+    DI    G
Sbjct: 268 GDDMKREYPTIPAEAFQQSVEGAYYAKQFRWLYTNKRICKLPDNSHLPVHTFWDIGV--G 325

Query: 330 DKTVVVFRRGNIIEHIF-DWSAKLIQETNQEGC 361
           D T + F     +  +  ++      E + EG 
Sbjct: 326 DSTAIWF-----VREVGEEFHIIDYYENSGEGL 353


>gi|320540563|ref|ZP_08040213.1| putative phage terminase, large subunit [Serratia symbiotica str.
           Tucson]
 gi|320029494|gb|EFW11523.1| putative phage terminase, large subunit [Serratia symbiotica str.
           Tucson]
          Length = 582

 Score = 51.9 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/338 (13%), Positives = 91/338 (26%), Gaps = 59/338 (17%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTRPGMS-- 109
            WQ   + A+    ++         F+ A + AG+G GK+ L A + L+ +         
Sbjct: 90  PWQCFIVGALFGWLNNEGQR----RFRMAYVEAGKGSGKSPLAAGIGLYCLVADNEARAE 145

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           +   A  + Q    L+ +    +   P                  AE +++S G   +  
Sbjct: 146 VYAAATKKDQAM-ILFRDAVAMVDQSPK----------------LAERIQKSGGAGKEWN 188

Query: 170 TITCRTYSEERP-DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
               +  +  RP     G           DE           ++   T+        M +
Sbjct: 189 LAFLQARAFFRPISADDGQSGPRPHCALIDEIHEHKSNQVVEMMRAGTKGRQQALIFMIT 248

Query: 229 NTR-RLNGWFYDIFNIPL---------------------------EDWKRYQIDTRTVEG 260
           N+        YD                                 +     + +      
Sbjct: 249 NSGHNKTSVCYDYHEYGRKVAEGSIEDDSFFAFICSLDEGDDPFKDSGCWKKANPSLGNT 308

Query: 261 IDSGFHEG---IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE-EAMSREAIDDLYA 316
               + +              + R     Q+   E       N++  E  S +      +
Sbjct: 309 FSDRYLQEQVTQARGMPAKESLVRRLNFCQWVDAENPWINSDNWMACEKTSLDLATLANS 368

Query: 317 PLIMGCDIAGEGGDKTVVVFRRG-NIIEHIFDWSAKLI 353
           P   G D++G+  D T +        + ++  W+ K  
Sbjct: 369 PCYGGLDLSGK-QDLTALALYWPEEKVAYVEFWTPKDT 405


>gi|281416321|ref|YP_003347561.1| DNA packaging protein B [Klebsiella phage KP32]
 gi|262410440|gb|ACY66705.1| DNA packaging protein B [Klebsiella phage KP32]
          Length = 543

 Score = 51.9 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/331 (11%), Positives = 82/331 (24%), Gaps = 69/331 (20%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
           NP   K  + A RGIGK+ +    ++W +   P + I+ ++ S+ +        +   + 
Sbjct: 7   NPKNKKFILQAFRGIGKSFITCAFVVWTLWRDPQLKILIVSASKERADANSIF-IKNIID 65

Query: 134 MLPHRHWFEMQSLSLHPSGWYAE-LLEQSMGIDSKHYTITCRTY----------SEERPD 182
           +LP     + +         +     +       K   IT +              E P 
Sbjct: 66  LLPFLSELKPRPGQRDSVISFDVGPAKPDHSPSVKSVGITGQLTGSRADIIIADDVEIPG 125

Query: 183 TFVGPHNTHGMAVFNDEASGT-------------PDIINKSILGFFTE--LNPNRFWIMT 227
                     +     E +                     ++     +        W   
Sbjct: 126 NSATQGAREKLWTLVQEFAALLKPLPTSRVIYLGTPQTEMTLYKELEDNRGYSTIIWPAQ 185

Query: 228 SNTRRLNGWFYDIFNIP------LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR 281
               +    +Y     P       ED +            DS   +     YG      +
Sbjct: 186 YPRSKEEDLYYGDRLAPMLRSEYDEDKEGLSSQPTDPVRFDSMDLQEREVEYGKAGYTLQ 245

Query: 282 IEI-----LGQ-FPQQEVNNFI----------PHNYIEEAMSREAIDD------------ 313
             +       + +P +  +  +           + ++    +R                 
Sbjct: 246 FMLNPNLSDAEKYPLRLRDAIVCGLQADKAPMHYQWLPNRQNRNEELPNVGMKGDEIYSF 305

Query: 314 --------LYAPLIMGCDIAGEGGDKTVVVF 336
                    Y   I+  D +G G D+T    
Sbjct: 306 HTASSNTGAYQGKILVIDPSGRGKDETGWCV 336


>gi|256850663|ref|ZP_05556088.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
 gi|256712531|gb|EEU27527.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
          Length = 418

 Score = 51.9 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/261 (13%), Positives = 83/261 (31%), Gaps = 36/261 (13%)

Query: 80  CAISAGRGIGKTTLNAW----MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
                GRG  K+++ +     MM++ I+    +++ICI  ++  L+++++ ++   +S+L
Sbjct: 9   VVCKGGRGSFKSSVISLKLVTMMMFYIAMGKTVNVICIRENQQYLRDSVYNQILWAMSIL 68

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT---HG 192
                F  +   +                    +  T  T+     +  +   +    + 
Sbjct: 69  GVESEFRTRVSPMVIQ-----------------HIRTGSTFYFYGANDPMKLKSNIVGNV 111

Query: 193 MAVFNDEASGTPD-IINKSILGFFTELN----PNRFWIMTSNTRR-LNGWFYDIFNIPLE 246
           +AV+ +E S   +  +    +  F         +    ++ N  R    W  +       
Sbjct: 112 VAVWFEEFSNLKNVNVFDQSVPTFIRQKPDFVKDVKIFISYNPPRNPYAWVNEWVTQRET 171

Query: 247 DWKRYQIDTR----TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302
           D   +   +      +        + I      D D  R   LG+               
Sbjct: 172 DPDYFVDSSTYLDDELGFTTKQQLDLIEKYKQNDPDYYRWLYLGE-AVGLGTQVYNMKLF 230

Query: 303 EEAMSREAIDDLYAPLIMGCD 323
           +  + R   D+    +  G D
Sbjct: 231 KV-VDRIPDDEYITDIFYGMD 250


>gi|90961262|ref|YP_535178.1| terminase large subunit [Lactobacillus phage Sal2]
 gi|90820456|gb|ABD99095.1| Terminase large subunit [Lactobacillus phage Sal2]
          Length = 627

 Score = 51.9 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/334 (12%), Positives = 100/334 (29%), Gaps = 54/334 (16%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
                E  ++   WQ +F+  +     +       +    +++  RG GKT L A +M +
Sbjct: 88  PNVDTESPTELMDWQ-KFIFCMLFGWRNLEGRKRFSRAMVSVA--RGQGKTYLMAILMCY 144

Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKW--LSMLPHRHWFEMQSLSLHPSGWYAELL 158
                     + ++N +  + +  + + +K         +H  +      + +    +  
Sbjct: 145 SYFIE----SLGLSNQDYLVSSINFKQTNKIFGYIKTMMKHIVKTDMFKDYAATVGFKAQ 200

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFT 216
              + +  K+  +   ++   + D++      H      DE       + I+K I G   
Sbjct: 201 NDQIVMKEKNNVLRAISHESGQYDSY------HFTTAIFDEIGEVKSREKISKIISGQVK 254

Query: 217 ELNPNRFWIMTSNTRRLNGWFYDIFNIPL--------EDWKRYQIDTRTVEGIDSGFHEG 268
             N     I TS     +  F++   +           D   +       + +D  F   
Sbjct: 255 VPNHQFIQISTSYPD-PSVPFHEDQKMMQQAMEQDYKRDADNFLGLIWAQDSLDETFKPE 313

Query: 269 II--------------------------SRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302
                                            +    + + L  +  +  N+F+  + I
Sbjct: 314 TWYKSNPLLYLDGQKQVLMEGLQDKRDADMLSGNVADFQNKNLNLWLAEATNSFLKLSDI 373

Query: 303 EEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
           E A+           + +G D +    D T + F
Sbjct: 374 ERAIQPNFNI-EGRTVYIGYDYSMF-SDNTAIAF 405


>gi|305665667|ref|YP_003861954.1| hypothetical protein FB2170_05195 [Maribacter sp. HTCC2170]
 gi|88710424|gb|EAR02656.1| hypothetical protein FB2170_05195 [Maribacter sp. HTCC2170]
          Length = 878

 Score = 51.9 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/204 (11%), Positives = 54/204 (26%), Gaps = 40/204 (19%)

Query: 32  VMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT 91
           +   FPW              ++Q +F+     H   N  +         + A  G GKT
Sbjct: 8   LKFKFPW-------------RKYQEQFLRHFAEHVLDNHLH---------VIAPPGSGKT 45

Query: 92  TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151
            L        I  + G   + ++ +   ++N     + ++             +     +
Sbjct: 46  LLG-----IEILRQIGKKTLVLSPTL-TIRNQWEDRLQQYF-----------TTGRPFVN 88

Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211
             +     + +   +            +  D      +     +  DEA    +   K +
Sbjct: 89  TSFDINEPRDITFSTYQGLHAFFKKQNDVQDFLEHFKSKGIKTIVLDEAHHLKNEWWKCL 148

Query: 212 LGFFTELNPNRFWIMTSNTRRLNG 235
                E        +T+     + 
Sbjct: 149 F-ALKEDQGLTIVALTATPPFDSS 171


>gi|325848842|ref|ZP_08170352.1| putative phage terminase, large subunit [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480486|gb|EGC83548.1| putative phage terminase, large subunit [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 462

 Score = 51.9 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 83/301 (27%), Gaps = 51/301 (16%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ   ++ +       +       +       R  GK+ +     L+ I    G  +  
Sbjct: 38  EWQRLILKDLLAINKDGLWTHTKCGYSL----PRRNGKSEILVMRELYAIL--KGEVVNH 91

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            A+         +   + W  +        ++  SL  +G         +          
Sbjct: 92  TAH-------RTFTSHASWERLCMVLDDANIEYKSLRATG----RERVEIPETGGRVEFR 140

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR- 231
            RT +                 +  DEA    D    ++    T     +  IM      
Sbjct: 141 TRTSTGGL--------GEGFDLLIIDEAQEYTDDQESALKYTVTSSKNPQT-IMCGTPPT 191

Query: 232 ------------------RLNGWFYDIFNIPL-EDWKRYQIDTRTVEGIDSGFHEG-IIS 271
                             R N  ++  +++P   D    ++  +T   + + F E  I  
Sbjct: 192 PISSGMVFVNFRKQCLTSRPNNAYWAEWSVPEMSDIHDSELWYKTNPSLGTIFTERSIED 251

Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDK 331
             G D     I+ LG +      + I     +  +  +++  L   + +G      G D 
Sbjct: 252 EIGSDETDFNIQRLGLWISYNQKSAITEKEWQR-LKLKSLPILTGEMHVGI---KFGNDG 307

Query: 332 T 332
           T
Sbjct: 308 T 308


>gi|296532346|ref|ZP_06895082.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
 gi|296267330|gb|EFH13219.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
          Length = 480

 Score = 51.9 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/296 (13%), Positives = 77/296 (26%), Gaps = 31/296 (10%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  + A RG GK+TL      WL+S  P   I+ +A  +  L   +   V + +   P  
Sbjct: 45  RLLLMAFRGCGKSTLVGLYCAWLLSRWPETRILVLAA-DHLLATKMVGTVRRIVERHPLC 103

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                +         +     +++ +            +       V   +   +A   D
Sbjct: 104 RAILPEVPEAWAVDRFTV--RRALALRDPSMLAAGLAGNITGARADVIICDDVEVAGNCD 161

Query: 199 EASGTPD--------IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250
            A    +            +  G    +           T          +   +     
Sbjct: 162 TAGKRAELRERLAETEFILTPGGTLLYVGTPHCAESLYRTPEEGEPTLAGYRRLVVPLLN 221

Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
               +   +   +     +  R G        ++L +          P   I      + 
Sbjct: 222 AAGRSAWPQRFPAEDVARLRERVG--PIQFSRQMLLRPVAGAAARLDPGLLIRYRDELDY 279

Query: 311 IDDLYAPL--IMG---------CDIA--GEG-GDKTVVVF----RRGNIIEHIFDW 348
            +    P+  +MG          D A    G GD +V+        GN   H   +
Sbjct: 280 REAHGRPVLGLMGRRMVSGGGYWDPAYGRPGRGDGSVLAITYADGEGNHYLHRLHY 335


>gi|196037629|ref|ZP_03104940.1| putative phage terminase, large subunit [Bacillus cereus
           NVH0597-99]
 gi|196031871|gb|EDX70467.1| putative phage terminase, large subunit [Bacillus cereus
           NVH0597-99]
          Length = 574

 Score = 51.9 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/350 (11%), Positives = 92/350 (26%), Gaps = 42/350 (12%)

Query: 19  LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78
           +       +   +    F    KGK          WQ  F   V      N +     + 
Sbjct: 43  IWFDVEKANAMIYFTETFLKHAKGKWAGQPLILETWQKFFFANVYGWQKYNDDGKAVRVI 102

Query: 79  KCA-ISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAE---VSKWL 132
           + A +   +  GKT +     ++ +      G  I   AN+  Q +N        +    
Sbjct: 103 RTAYLQVPKKNGKTIMGGSPGIYAMYGEGVKGADIYISANTFEQCQNAAGPIALTIENSP 162

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP----------- 181
            + P    ++ +  ++    +     +       K  T        + P           
Sbjct: 163 DLRPDTRIYKGKEDTIKSIKYTFVEDDIKYANTIKVLTKDNAGNEGKNPYINYFDEVHAQ 222

Query: 182 ---DTFVGPHN-----THGMAVFNDEASG----TPDIINKSILGFFTELNPNRFWIMTSN 229
              + +    +        + +    A          I         +   + +++M   
Sbjct: 223 MDREQYDNLRSAQIAQEEPLNIITSTAGKNTGSLGTQIYTYAKEVLKDDKDDSWFMMIYE 282

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS---DVARIEILG 286
             +   W         + W+    +      ++  F E        +S        + L 
Sbjct: 283 PNKKFDWTD------RDVWRMVNPNMDVS--VNMEFLENAFKEAQNNSFNKAEFLSKHLD 334

Query: 287 QFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
            F       +   + +++ +  +  D      ++G D++    D T V  
Sbjct: 335 VFVNYAET-YFDKDQLDKMLVDDLGDVEGLTCVIGVDLSRR-TDLTCVSI 382


>gi|332558637|ref|ZP_08412959.1| phage terminase [Rhodobacter sphaeroides WS8N]
 gi|332276349|gb|EGJ21664.1| phage terminase [Rhodobacter sphaeroides WS8N]
          Length = 535

 Score = 51.9 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/371 (12%), Positives = 96/371 (25%), Gaps = 73/371 (19%)

Query: 27  SFKNFVMRFFPWGIKGKPLEHFSQP--------HRWQLEFMEAVDVHCHSNVNNSNPTIF 78
               +  R   W  K   L+H   P          WQ   +  +    H + +     + 
Sbjct: 15  DPLGYGERAVAWLKK---LKHPKNPAIGHPFQLDPWQERIVRRIYGPRHPDGSR---IVR 68

Query: 79  KCAISAGRGIGKTTLNAWMMLWLIS---TRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
           +  +   RG  KT+L A + L  +      PG   +  A++  Q            L + 
Sbjct: 69  RVVLLLPRGNRKTSLCAAITLLHLIGPERTPGGLTVSAASAHEQA-----------LELF 117

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
                       L       E + +          +                H      V
Sbjct: 118 NEASLIVQHDHRLRKHLNIREYVSRIAFPKEGSRYVA-------VAADGKVLHGKTPNVV 170

Query: 196 FNDEASGTPD----IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD------------ 239
             DE             +++     ++      + +++ R      +             
Sbjct: 171 IADELHAWEGRAGLRQWEALDSALVKVPGTLMLVASTSGRGQENLAWKTIEYAIRVQKGE 230

Query: 240 ----------IFNIPLEDWKRYQIDTRTVEGIDSGFHE--------GIISRYGLDSDVAR 281
                         P +DWK   +      G+  G+ +                + D   
Sbjct: 231 IDDPATLPVIFMAEPEDDWKDEDLWHAVNPGLRHGYPDLDSYRDKARKAEFSPFERDSFL 290

Query: 282 IEILGQFPQQEVNNFIPHNYIEEA---MSREAIDDLYAPLIMGCDIAGEGGDKTVVVFR- 337
              L ++  Q  + F+  +  +     +  + +D + AP  +G D++       VV    
Sbjct: 291 QFNLNRWLDQSSSPFVEMHVYDRGAREVDLDELDMVQAPCWLGVDLSKNEDLTCVVAAWE 350

Query: 338 RGNIIEHIFDW 348
            G     +  W
Sbjct: 351 DGQDGYQVHPW 361


>gi|308174796|ref|YP_003921501.1| terminase large subunit [Bacillus amyloliquefaciens DSM 7]
 gi|307607660|emb|CBI44031.1| putative terminase large subunit [Bacillus amyloliquefaciens DSM 7]
 gi|328554740|gb|AEB25232.1| terminase large subunit [Bacillus amyloliquefaciens TA208]
          Length = 567

 Score = 51.9 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/347 (10%), Positives = 92/347 (26%), Gaps = 58/347 (16%)

Query: 22  AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHR--------WQLEFMEAVDVHCHSNVNNS 73
            +      N+             +E  S P          +Q   + ++      +  + 
Sbjct: 35  EKSKTDSFNYCFNVEEAQESISFIETLSNPETGEGLELLMFQKWIIGSIFGWIRKDNGHR 94

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
                  +++  R  GK+ + A +         G     + +S    +  ++A      +
Sbjct: 95  RFKRAMISMA--RRNGKSLIVAAI---------GGKEFILGDSPQMNRKIVFAS----NA 139

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE-RPDTFVGPHNTHG 192
           M   RH FE            ++ +++S+ +                             
Sbjct: 140 MKQARHGFEYMQGQFRILSKQSKSIKRSVKVLKDSIEDKSSNSKAYPVASDTGKLDGFAS 199

Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS----NTR----------------- 231
                DE   +PD+   ++L        +    + S    N                   
Sbjct: 200 TVAIIDEFHESPDLKMYNVLKTGQVGLKSSLLAIVSTAGLNPNVPMYKEIQMLDRVLEGN 259

Query: 232 -RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG------------IISRYGLDSD 278
             ++ +F  I+     + +    +T           E               ++   + +
Sbjct: 260 LTMDDYFIAIYEQDDVEKEIDMPETWIKSNPRLEDEEAASFMVDNIKTDVQAAKVQRNLN 319

Query: 279 VARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
              ++    + Q    ++IP +        EA D     + +G D+A
Sbjct: 320 SLYVKTFNVWRQASEQSYIPLDDWNACAVEEAPDIRGKEVYIGLDMA 366


>gi|256375788|ref|YP_003099448.1| phage terminase, large subunit, PBSX family [Actinosynnema mirum
           DSM 43827]
 gi|255920091|gb|ACU35602.1| phage terminase, large subunit, PBSX family [Actinosynnema mirum
           DSM 43827]
          Length = 437

 Score = 51.9 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 59/239 (24%), Gaps = 32/239 (13%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
             GKT   A +  W++  R             + +++ +  V   ++             
Sbjct: 39  RSGKT--IASICTWMMFIRRAPRGPL--AIIGKTRDSAYRNVIDVMAE------------ 82

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
               +         +  I      +     ++ + +             + DE +  P+ 
Sbjct: 83  ---MNPGAVVYTRGAPTIRVLGRLVHVFGANDAKAEGV--LRGLTLAGAYVDEITLVPEA 137

Query: 207 INKSILGFFTELNPNRFWIMTSNTRRL-----NGWFYDIFNIPLEDWKRYQIDTRTVEGI 261
             + ++G  +          T+N           +       P    + ++       GI
Sbjct: 138 FWQQLMGRLSVAGAQL--FGTTNPDSPMHWLRVDYLDREHTEPALGLRSFKFVLDDNPGI 195

Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIM 320
                    +++       R  ILG++      +       +    R A          
Sbjct: 196 PEEKKRQYKAQFTG--LWYRRFILGEWV-GAEGSIYDM-LDDALHCRTAPPRERWQAAW 250


>gi|124516485|gb|EAY57993.1| putative helicase [Leptospirillum rubarum]
          Length = 1054

 Score = 51.9 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 58/185 (31%), Gaps = 29/185 (15%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P+ +Q E ++ ++      V       F+  + +  G GKT + A+        RP  + 
Sbjct: 319 PYPFQQEILDRLE------VEREVNGSFRNLVVSATGTGKTVIAAFDFRRFREKRPDATF 372

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + +A+ +  L+ +L             +H+  +         W A      +        
Sbjct: 373 LFVAHRKEILEQSL-------------KHFRHILEDRNFGELWVAGSRPVHVRH------ 413

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
           +     S +R +            V  DE       +  +       L P     +T+  
Sbjct: 414 VFASIQSLDRAE-LDRISPERFDYVVIDE---IHHGMAPTYRRLLETLKPRILLGLTATP 469

Query: 231 RRLNG 235
            R +G
Sbjct: 470 ERSDG 474


>gi|87200729|ref|YP_497986.1| Phage uncharacterized protein-like [Novosphingobium aromaticivorans
           DSM 12444]
 gi|87136410|gb|ABD27152.1| Phage uncharacterized protein-like protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 458

 Score = 51.9 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/302 (10%), Positives = 68/302 (22%), Gaps = 47/302 (15%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
             +  D           P     A    R  GKT     ++     + PG   +      
Sbjct: 26  LFKRTDKQAEQAAMVHGPARHGLAYGGSR-SGKTFGFCELIGGRALSAPGSRHLIARLHN 84

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
             ++ ++               W +M  L+     +     +Q   +             
Sbjct: 85  IDVRQSVM-----------LDTWPKMMGLAFPDVPYEVNKSDQYAKLPDGSEVWFGGLDD 133

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI-----LGFFTELNPNRFWIMTS--NT 230
           +ER D            ++ +E+S        ++        F               N 
Sbjct: 134 KERVDK---ILGKEYATIYVNESSQVAYETVLTLRTRLAQACFRRDGSRLPLKGLYDLNP 190

Query: 231 RRLNGWFYDIFNIPLEDWK----------RYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280
                W Y  F   +                 ++      +   +H  +           
Sbjct: 191 TGRGHWTYREFVEQVRPENGMPIEHGSRAWVAMNPVDNPHLPPEYHAELDGLPDKQRQRF 250

Query: 281 RIEILGQFPQQEVNNFIPHNYIEEAMS---------REAIDDLYAPLIMGCDIA---GEG 328
           R    G++  +        +                R         +++G D +   G G
Sbjct: 251 R---DGKYLSEVPGALWSASDRTADDGTLMPGIDTLRRHAHPPLRRVVIGVDPSGSDGTG 307

Query: 329 GD 330
           GD
Sbjct: 308 GD 309


>gi|320006266|gb|ADW01295.1| phage terminase-like protein large subunit [Lactobacillus phage
           Sha1]
          Length = 632

 Score = 51.9 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/333 (14%), Positives = 99/333 (29%), Gaps = 47/333 (14%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
                   ++   WQ +F+ A+ +   ++      +    +++  RG GKT L A +  +
Sbjct: 88  PNVDTGEPTKLMPWQ-KFIMAMLIGWRNDDGGKRFSRAIVSVA--RGQGKTYLMAIITAY 144

Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLS--MLPHRHWFEMQSLSLHPSGWYAELL 158
                     + ++N +  + +  + + SK L            ++           +  
Sbjct: 145 SYLIE----SLGLSNQDYLVSSINYKQTSKILGYIKSMLAKIATIEPFKTLIKDSGLDTR 200

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFT 216
             S   D    + T         +      + H      DE         I+K + G   
Sbjct: 201 TLSSQADQVTMSKTNNKLRAISHEAGQYD-SFHFTTAIFDEIGEVKTRQKISKIVSGQVK 259

Query: 217 ELNPNRFWIMTSNTRRLNGWFYDIFNIPL-------EDWKRYQIDTRTVEGIDSGFHEGI 269
             N     I T+       +  D   I          D   Y     + + +D  +   +
Sbjct: 260 VRNKQFIQISTAYPDPTVPFHDDERMIQQAMEQDYLRDADTYLGLIWSQDNLDETYKPDM 319

Query: 270 ISRYG-------------------LDSDV-------ARIEILGQFPQQEVNNFIPHNYIE 303
             +                      DSD         + + L  + +Q V++F+    +E
Sbjct: 320 WVKSNPLLDLPSQREVLLNGLTDKRDSDALSGTLNDFQNKNLNLWLEQSVDSFLKLPDVE 379

Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
           +A+      D    + +G D +    D T + F
Sbjct: 380 KAIVPSFSFD-DRQVYIGFDYSMF-SDNTALAF 410


>gi|313207428|ref|YP_004046605.1| phage terminase, large subunit, pbsx family [Riemerella
           anatipestifer DSM 15868]
 gi|312446744|gb|ADQ83099.1| phage terminase, large subunit, PBSX family [Riemerella
           anatipestifer DSM 15868]
 gi|315023322|gb|EFT36332.1| putative phage large subunit terminase [Riemerella anatipestifer
           RA-YM]
 gi|325335115|gb|ADZ11389.1| phage terminase, large subunit, pbsx family [Riemerella
           anatipestifer RA-GD]
 gi|329025312|gb|AEB71676.1| phage terminase large subunit [Riemerella phage RAP44]
          Length = 432

 Score = 51.9 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/296 (10%), Positives = 71/296 (23%), Gaps = 47/296 (15%)

Query: 62  VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121
           +      N   +N   F   ++ GRG  K+  NA   +  +S   G  I+    + T  +
Sbjct: 3   IKTQEVYNPLYTNKDKFIILLTGGRGSAKSY-NATTFVERLSFEAGHKILFSRYTMTSAR 61

Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
            ++  E  + +     + +F + +  +      + +L + +   S + T   ++      
Sbjct: 62  ISIIPEFEEKIEKEGVQEYFTVTNNEILNKFSGSSVLFRGIKTSSGNQTANLKSIQGITT 121

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
                                      + ++    + N     I+  N    + + Y  +
Sbjct: 122 FVGDEMEEWESE------------EDYEKLILSIRQKNKQLRVILILNPTDSDHFIYKKY 169

Query: 242 NIPLEDWK----------------RYQIDTRTV-EGIDSGFHEGIISRYGLDSDV----- 279
                                             E +   F   I        +      
Sbjct: 170 IENTHKIVQIDGVDVQISTHPDVLHIHTTYLDNIENLSEQFLSNIERIKQESIEQCTING 229

Query: 280 -----------ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI 324
                         +I+G++           N+ E                   D 
Sbjct: 230 KLAQVLFNKSKYAQKIIGRWADMAEGVIFT-NWKEGDFDTSIPYCYGQDYGFSIDP 284


>gi|317501194|ref|ZP_07959399.1| terminase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331090060|ref|ZP_08338949.1| hypothetical protein HMPREF1025_02532 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316897370|gb|EFV19436.1| terminase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330402522|gb|EGG82091.1| hypothetical protein HMPREF1025_02532 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 464

 Score = 51.9 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/313 (12%), Positives = 70/313 (22%), Gaps = 50/313 (15%)

Query: 39  GIKGKPLEHFSQPH--RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
           G +   L   +      WQ      +       +       +       R  GK+     
Sbjct: 24  GQEAAELYAKTGNELLEWQQLLQCDIMAVNDDGLWMHQKYGYSV----PRRNGKSENVLA 79

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
             LW +    G  I+  A+  T     +W  + +       +            S + A 
Sbjct: 80  RCLWGLKN--GERILYTAHRATTSH-AVWERLDRMCEKAGIK----------ISSSFKAF 126

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT 216
             E     D        RT S                 +  DEA    +    S+    +
Sbjct: 127 GKEHLYTSDGGVVEFRTRTSSGGL--------GEGYDVLIIDEAQEYTEAQETSLKYIVS 178

Query: 217 ELNPNRFWIMTSNTRRLNGWF-----YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI-- 269
           +    +  IM                Y    +    +     +        +   E    
Sbjct: 179 DSENPQT-IMLGTPPTAVSAGTVFTKYRETVLAGRGFDSGWAEWSVENLTPANDVEAWYE 237

Query: 270 --------------ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY 315
                          +    D     I+ LG + +    + I     E          L 
Sbjct: 238 TNPSLGTILTERKIRAEITTDDIDFNIQRLGLWLKYNQKSAISKTEWESLAIAS-KPKLK 296

Query: 316 APLIMGCDIAGEG 328
             L +G     +G
Sbjct: 297 GELFVGVKYGHDG 309


>gi|18071222|ref|NP_542306.1| hypothetical protein PBC5p46 [Sinorhizobium phage PBC5]
 gi|17940328|gb|AAL49572.1|AF448724_9 unknown [Sinorhizobium phage PBC5]
          Length = 514

 Score = 51.9 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/357 (8%), Positives = 76/357 (21%), Gaps = 86/357 (24%)

Query: 33  MRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTT 92
           + +         L   ++P   Q + +  +                +  +   R  G +T
Sbjct: 27  LYYILDKNGDTVLFKPNEP---QRKLLRRMWH--------------RNIVPKARQRGFST 69

Query: 93  LNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSG 152
           L   ++L             IA         +  ++      LP           L    
Sbjct: 70  LIQIIILDACLFNENQRAAIIAQDRVTASKIMRNKIEFAYDRLPPW---------LRQKV 120

Query: 153 WYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212
                  +     +        +      DT    H +    +  +    +P    K + 
Sbjct: 121 PIVTDNVEEKIFANGSSIQVSTSARG---DTLNWLHISEFGIICFE----SPTKAEKIVT 173

Query: 213 GFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP-----------LEDWKRYQIDTRTVEGI 261
           G            + S  +  +G +Y++                  ++ +       +  
Sbjct: 174 GSLAAA-AQGMIFIESTAKGRDGAYYNMVMEALALAEAGKRLNRLQYRLHFASWWDADEY 232

Query: 262 ------------DSGFHEGIISRYGLDSDVARIEI-----LGQFPQQEVNNF--IPHNYI 302
                       D  + + +    G     A+           F  ++   +   P    
Sbjct: 233 AMDPHGVIIEPKDHKYFDELEREIGRPISEAKRAWYVSTRRSDFADEDEKMWQEYPSTVR 292

Query: 303 EE--------------------AMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRG 339
           E                                 P+    D+     D   + F + 
Sbjct: 293 EAFKVSVEGVILAKQMSIARSQNRITRVPYRPELPVNTFWDLGV--DDDIAIWFHQA 347


>gi|75675664|ref|YP_318085.1| phage terminase [Nitrobacter winogradskyi Nb-255]
 gi|74420534|gb|ABA04733.1| phage Terminase [Nitrobacter winogradskyi Nb-255]
          Length = 537

 Score = 51.9 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/367 (12%), Positives = 97/367 (26%), Gaps = 67/367 (18%)

Query: 27  SFKNFVMRFFPW-----GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81
               +  R   W       K     H  Q   WQ   +  +    H +       +    
Sbjct: 15  DPFGYGERAVQWLRRLKHPKNPARGHPFQLDPWQERIIRKLYGPRHEDGRRVVRRLVL-- 72

Query: 82  ISAGRGIGKTTLNAWMMLWLIS---TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               RG  KT+L   + L  +     +PG  ++  A++  Q    L+ EV+  +     R
Sbjct: 73  -LLPRGNRKTSLCGAITLLHLIGPERQPGNLVVSAASAHEQAME-LFNEVAMIVQH--DR 128

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
              +  ++                   S       R+            H      V  D
Sbjct: 129 RLEKHLAVR---------------EYTSSITFKAQRSRYIAVASDGKVQHGKTPNVVIAD 173

Query: 199 EASGTP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD--------------- 239
           E          +  +++     ++      + T++ R      +                
Sbjct: 174 ELHAWEGRAGRVQWEALDSALVKVPDTLMIVATTSGRGQENLAWKTIDYAIKVQKGEIDD 233

Query: 240 -------IFNIPLEDWKRYQIDTRTVEGIDSGFHE--------GIISRYGLDSDVARIEI 284
                        +DW+   +      G+  G+ +                D D      
Sbjct: 234 PATLPVVFMAEEGDDWRDEAVWHALNPGMRHGYPDLTSYRDKAQKAINSPSDRDSFLQFN 293

Query: 285 LGQFPQQEVNNFIPHNYIEE-AMSREAIDDLYAPLIMGCDIAGEGGDKTVV--VFRRGNI 341
           L ++     + F+     ++ A +    +       +G D++    D T V   +R G+ 
Sbjct: 294 LNRWLDHSTSPFVEMLVYDQGARAVNLDELKGESCWIGVDLS-SNSDLTAVVACWRDGDD 352

Query: 342 IEHIFDW 348
              +  W
Sbjct: 353 GYQVQPW 359


>gi|262047928|ref|ZP_06020873.1| terminase large subunit [Lactobacillus crispatus MV-3A-US]
 gi|260571781|gb|EEX28357.1| terminase large subunit [Lactobacillus crispatus MV-3A-US]
          Length = 631

 Score = 51.5 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/328 (13%), Positives = 90/328 (27%), Gaps = 40/328 (12%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW---- 96
               L        WQ   +  ++     N            IS GRG GKT +       
Sbjct: 88  PDVDLHKPLPLMLWQKFILAMINGWKDQNGERRFTD---IHISVGRGQGKTQIAGVQMCK 144

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
            +L           +  AN+  Q    L+  V K L  +     F+  +          +
Sbjct: 145 AVLIDTLNFTNKDFLITANTSDQ-STKLFGYVKKMLEAVIKIEPFKSLAKEAGLDLQTNQ 203

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--------IIN 208
           L+E+    ++K + I+      +     +  ++  G     D  S   D           
Sbjct: 204 LIEK--KTNNKVWKISYEADKYDSTHNVLAIYDETGALDTYDRISDITDGQGQVKPYHQF 261

Query: 209 KSILGFFTELNPNRFWIMTSN--------TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
             I   + +          +         +R  +     ++     D             
Sbjct: 262 IKISSAYPDPTSPFHQEQITMQHIMEKDYSREGDNSLCLVWAQDDLDETFKPETWEKSNP 321

Query: 261 IDSGFHEGIISR-----YGLDSDV-------ARIEILGQFPQQEVNNFIPHNYIEEAMSR 308
           +     E    R        D  +        + + L  + +Q   +++    +E A+  
Sbjct: 322 LIGLSKEEQERRTSNLIKQRDQAMLANTLHKFQNKNLNVWLKQSTASYLNLKDVENAIDD 381

Query: 309 EAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
           +   D    + +G D +    D T + F
Sbjct: 382 DFKVD-GREVYIGFDYSMF-SDNTAIGF 407


>gi|307128279|ref|YP_003880310.1| phage terminase large subunit [Streptococcus pneumoniae 670-6B]
 gi|306485341|gb|ADM92210.1| phage terminase, large subunit, pbsx family [Streptococcus
           pneumoniae 670-6B]
 gi|321157268|emb|CBW39251.1| Phage terminase large subunit [Streptococcus phage 2167]
          Length = 432

 Score = 51.5 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 85/291 (29%), Gaps = 25/291 (8%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTI--FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
           Q + +  +     +       +   ++  +   RG  K+   A   +  +      +++ 
Sbjct: 9   QSDIVIDLPKTVGAGYGQFWRSRNLYRV-VKGSRGSKKSKTTALNYVVRLLKYSWANLLV 67

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           I       K + + +     ++L   H F+                   + I +    I 
Sbjct: 68  IRRYSNTNKQSTYTDFKWACNVLGVTHLFKFNES------------LPEITIKATGQKIL 115

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI-----INKSILGFFTELNPNRFWIMT 227
            R   +E   T +          + +EA           + +SI G     +  +   +T
Sbjct: 116 FRGLDDELKITSITVDIGSLCWAWFEEAYQIETEDKFSTVVESIRGSLDVPDFFKQITVT 175

Query: 228 SNTRRLNGWFYDIF---NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
            N      W   +F        D        +  E +D    +     Y  +   ARI  
Sbjct: 176 FNPWNERHWLKRVFFDEETRRADTFATTTTYKCNEWLDGVDIKRYEDLYHTNPRRARIVC 235

Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335
            G++          +  +++    E + D    L +G D  G   D T + 
Sbjct: 236 DGEW-GVAEGLIYENVTVKDFDKDELLRDSANKLCIGLDF-GFTHDPTALC 284


>gi|167600439|ref|YP_001671939.1| terminase large subunit [Pseudomonas phage LUZ24]
 gi|161168302|emb|CAP45467.1| terminase large subunit [Pseudomonas phage LUZ24]
          Length = 482

 Score = 51.5 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 72/295 (24%), Gaps = 47/295 (15%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML---------WL 101
           P+ WQ +F+ A                       G   GKT   A++M          W 
Sbjct: 28  PYGWQEKFIAASSNCAQ------------LLAMTGNRCGKTYTGAFIMACHLTGRYPEWW 75

Query: 102 ISTRPGMSIICIAN--SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159
              +    + C A   S    ++ L +E      +L      E     + P     E + 
Sbjct: 76  TGRKYDRPVNCWAAGISTDTTRDILQSE------LLGDWKNPEAFGTGMIPKEDIVETIR 129

Query: 160 QSMGID-------SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212
           +                        +    +      T    ++ DE     DI  + + 
Sbjct: 130 REGKPGCVQAVVVKHTSGGLSSLIFKSYEMSQDKFMGTAIDVIWLDEECP-KDIYTQCVT 188

Query: 213 GFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK-RYQIDTRTVEGIDSGFHEGIIS 271
              T         +T             F   L+  +            +     E ++S
Sbjct: 189 RTATTGG---IVYLTFTPEHGLTEIVKDFLQDLKPGQFLVHASWEDAPHLSPEVKEQLLS 245

Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA-PLIMGCDIA 325
            Y       R E     P        P   +EE    E          I+G D+ 
Sbjct: 246 VYSPAERRMRAEG---VPMLGSGVVFP--ILEEKFVCEPFQIPDHFHRIIGIDLG 295


>gi|329115490|ref|ZP_08244238.1| Putative protein YmfN [Acetobacter pomorum DM001]
 gi|326695200|gb|EGE46893.1| Putative protein YmfN [Acetobacter pomorum DM001]
          Length = 576

 Score = 51.5 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/272 (10%), Positives = 69/272 (25%), Gaps = 35/272 (12%)

Query: 54  WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSII 111
           WQ   +  V    H           +  I   RG  K+TL++ + L++++    PG  + 
Sbjct: 87  WQCFILTTVFGWLHKKTG--FRRFRRSFIGVPRGNAKSTLSSGVALFMLTADGEPGPEVY 144

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A +  Q K       +      P    + +            + +             
Sbjct: 145 SAATTRDQAKIVFGDAQAMTRKTPPLASKYGLDVQQRGIISACNDGI------------- 191

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNRFWIMTSNT 230
                 +      +  H         DE  +     +   +     + + +  W +T+  
Sbjct: 192 FRPLSRDADTQDGLNIH-----FGCLDEVHAHKTREVYDVVETGAGKRDQSLIWAITTAG 246

Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290
              +G  Y+++       ++   D              +      D     I        
Sbjct: 247 SNRSGIGYELWTYLEAVLRKVLADWEESPYP-------LKGDQAEDEQFFGIIYT---ID 296

Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGC 322
              +   P ++ +   +           + G 
Sbjct: 297 DGDDWTDPASWQKANPNWGVSVMPD--YVAGL 326


>gi|299146040|ref|ZP_07039108.1| putative phage terminase, large subunit [Bacteroides sp. 3_1_23]
 gi|298516531|gb|EFI40412.1| putative phage terminase, large subunit [Bacteroides sp. 3_1_23]
          Length = 540

 Score = 51.5 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 83/301 (27%), Gaps = 31/301 (10%)

Query: 54  WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSII 111
           WQ   +  +             T     +S  R  GKT L A + L+ +      G  ++
Sbjct: 72  WQQFIIANILGFYWKGTGTRRFTSSYIEVS--RKQGKTALAAALCLYYLIADGEDGAEVL 129

Query: 112 CIANSETQLKNTL---------WAEVSKWLSMLPHRHWFEMQSLSLH-PSGWYAELLEQS 161
             ANS+ Q K                 K+L+       F+  +  L   +   ++L   +
Sbjct: 130 LAANSKEQAKIAFDMCSKFSKGLDTKGKYLTAYRADILFKATNSKLKVLAADDSKLDGFN 189

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE---- 217
                       +T               +        A     +    +     E    
Sbjct: 190 ASFGLLDEYHAAKTSKVRDVIKSSMGMRENPHLCTITTAGFDKTLPCYQLRTVAIEVLNE 249

Query: 218 -LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRY--- 273
             + +  +I   +    + W          +    ++       + S + +G + +    
Sbjct: 250 LKSDDEMFIAIYSLDADDDW--------RSEKNWMKVAPNLNVTVTSKYIKGQVQQAINN 301

Query: 274 GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTV 333
             D    R + L Q+           + I+   + +       P  +G D+A    D T 
Sbjct: 302 PSDEVGVRTKTLNQWCDSATVWLSDESIIKCTQAVDLSKFRGLPCYIGVDLAAT-SDLTA 360

Query: 334 V 334
           V
Sbjct: 361 V 361


>gi|321157214|emb|CBW39198.1| Phage terminase large subunit [Streptococcus phage 8140]
          Length = 432

 Score = 51.5 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 85/291 (29%), Gaps = 25/291 (8%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTI--FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
           Q + +  +     +       +   ++  +   RG  K+   A   +  +      +++ 
Sbjct: 9   QSDIVIDLPKTVGAGYGQFWRSRSLYRV-VKGSRGSKKSKTTALNYVVRLLKYSWANLLV 67

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           I       K + + +     ++L   H F+                   + + +    I 
Sbjct: 68  IRRYSNTNKQSTYTDFKWACNVLGVTHLFKFNES------------LPEITVKATGQKIL 115

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI-----INKSILGFFTELNPNRFWIMT 227
            R   +E   T +          + +EA           + +SI G     +  +   +T
Sbjct: 116 FRGLDDELKITSITVDVGSLCWAWFEEAYQIETEDKFSTVVESIRGSLDVPDFFKQITVT 175

Query: 228 SNTRRLNGWFYDIF---NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
            N      W   +F        D        +  E +D    +     Y  +   ARI  
Sbjct: 176 FNPWNERHWLKRVFFDEETSRADTFATTTTYKCNEWLDEVDIKRYEDLYHTNPRRARIVC 235

Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335
            G++          +  +++    E + D    L +G D  G   D T + 
Sbjct: 236 DGEW-GVAEGLIYENVTVKDFDKDELLRDSANKLCIGLDF-GFTHDPTALC 284


>gi|124005744|ref|ZP_01690583.1| hypothetical protein M23134_03970 [Microscilla marina ATCC 23134]
 gi|123988812|gb|EAY28418.1| hypothetical protein M23134_03970 [Microscilla marina ATCC 23134]
          Length = 535

 Score = 51.5 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 51/275 (18%), Positives = 88/275 (32%), Gaps = 27/275 (9%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
            AG+G GKT     +   LIS  PG+     AN++ QL ++    V      L    + E
Sbjct: 32  MAGQGAGKTHGAGLISFRLISNFPGVFGFMGANTDMQLTDSTLYRVFLVWKDLGLEEYDE 91

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE-----ERPDTFVGPHNTHGMAVFN 197
                 +  G          G   K Y      ++         + +             
Sbjct: 92  HTGEGDYVVGTQPPRHFSREGHAFKSYRNKISFWNGCVVFIGSLENYKAHDGKEFAWAIL 151

Query: 198 DEASGTPDI-INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256
           DE   T +  + + ILG   +       +  + T +       + N P      +    +
Sbjct: 152 DETKDTREEAVQEVILGRLRQQGLYISIVSKALTDKEYDEGNTVANQPFNPLYIFTSPAK 211

Query: 257 TVEGID-----SGFHEGIISRYGLDSDVARIEILG--QFPQQEVNNF----IPHNYIEEA 305
            V  I+     + + E I ++        + ++ G  +F      +     +P NYIE+ 
Sbjct: 212 -VPWINDWFELNEYEEEIKAKIYDPPRYFKKQVSGGSKFVVISATHLNLKNLPSNYIEK- 269

Query: 306 MSREAIDDLYAPLIMGCDI-AGEGG------DKTV 333
                    +  LI G D  A  GG      D +V
Sbjct: 270 QETNLASHRHGMLIYG-DPLAKSGGEFWKQWDASV 303


>gi|312873790|ref|ZP_07733834.1| putative phage terminase, large subunit [Lactobacillus iners LEAF
           2052A-d]
 gi|311090671|gb|EFQ49071.1| putative phage terminase, large subunit [Lactobacillus iners LEAF
           2052A-d]
          Length = 570

 Score = 51.5 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/297 (12%), Positives = 85/297 (28%), Gaps = 56/297 (18%)

Query: 77  IFKCAISA-GRGIGKTTLNAWMMLWLISTRP----GMSIICIANSETQLKNTLWAEVSKW 131
            F  AI +  R  GK+ + A + L+++           I   AN   Q K   +     +
Sbjct: 95  RFTMAIVSMARKQGKSIIVAGIALYMLRYEKTPLVARQIYTAANKRDQAK-VTFNYAVAF 153

Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
           L  L     +  Q   +             +   +K                  G    +
Sbjct: 154 LDSLRKISKYFRQHTRIKRDEIEDVSSHSFIKPLAKET---------------KGIQGLN 198

Query: 192 GMAVFNDE-ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD----------- 239
            +    DE A      + ++I     +       ++++ +  +NGWF++           
Sbjct: 199 ALLGILDEQADSNDRTVLEAIQKSQRQQEQPLTIVISTVSTNVNGWFHEKEYRYATQVLN 258

Query: 240 -----------IFNIPLEDWKRYQIDT----------RTVEGIDSGFHEGIISRYGLDSD 278
                       +    ++  + +             +  + +     E       +++ 
Sbjct: 259 GEIKDDSYFAIWYEQESDEELQDEKTWIKSNPILINKKISKKLLPKLREDWERAQSMETT 318

Query: 279 VARIEILGQ-FPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334
            +        + Q   +++I        +  E  +     + +G D+A  G D + V
Sbjct: 319 TSSKIFTFNMWQQASEDSYISVKEWANTLVEEKPNLYGRDVYLGMDLARVG-DLSAV 374


>gi|13095610|ref|NP_076521.1| cleavage/packaging protein [Bovine herpesvirus 4]
 gi|4928934|gb|AAD33781.1|AF139096_4 viral terminase [Bovine herpesvirus 4]
 gi|12802560|gb|AAK07952.1|AF318573_32 cleavage/packaging protein [Bovine herpesvirus 4]
          Length = 682

 Score = 51.5 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/175 (11%), Positives = 52/175 (29%), Gaps = 16/175 (9%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GKT +   ++  L+++   + I  +A+ +          ++          WF  +
Sbjct: 218 PRRHGKTWIVVAIISVLLASVENVHIGYVAHQKHVANAVFTEIITTLYQ------WFPSK 271

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
           ++ +          +               T                   ++ DEA+   
Sbjct: 272 NIEIKKENGTIIYTKPGRKP---------STLMCATCFNKNSIRGQTFNILYVDEANFIK 322

Query: 205 DIINKSILGFFTELNPNRFWIMTSNT-RRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
                +ILGF  + +    +I + N+  +   + +++ N   +            
Sbjct: 323 KEALPAILGFMLQKDAKIIFISSVNSADKSTSFLFNLRNAKEKMLNVVNYVCPEH 377


>gi|307545236|ref|YP_003897715.1| hypothetical protein HELO_2646 [Halomonas elongata DSM 2581]
 gi|307217260|emb|CBV42530.1| hypothetical protein HELO_2646 [Halomonas elongata DSM 2581]
          Length = 534

 Score = 51.5 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/336 (11%), Positives = 78/336 (23%), Gaps = 67/336 (19%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q +                     +  I   R +G TT      L     R   +  CI 
Sbjct: 52  QGKVRRFRPNRAQRR--RYIKGHVRDIILKARQLGFTTFEMIDALDDCLFRDNFAAGCIC 109

Query: 115 NSETQLKNTLWAEVSKWLSMLPH-RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173
           +     ++    +VS     +    H          P     +    +   D+       
Sbjct: 110 HKLDDAQDIFRNKVSFAYQSIDDTWHRIFKMLGIRIPQPVSDKSGSGAYVFDNGSSIKVS 169

Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGT----PDIINKSILGFFTELNPNRFWIMTSN 229
            +Y      T    H          E        P    + + G F  +       + S 
Sbjct: 170 TSYRG---GTLQRLH--------ISEFGKICRQYPHKAQEIVTGAFEAVGLGNQITLEST 218

Query: 230 TRRLNGWFYDIFNIPLE-----------DWKRYQIDTRT------------VEGIDSGFH 266
                G+F+D                  D++ +                  V      + 
Sbjct: 219 AEGREGYFFDYCQSAQHLQELGRAPTLMDFQFHFFPWWQEPAYRLDPEGVLVPQWLREYF 278

Query: 267 EGIISRYGLDSDVARIEILGQ--------------------FPQQEVNNFIPHNY----I 302
           E +  ++G+ +D A+     +                    F Q     +          
Sbjct: 279 EDLEHKHGIATDAAQQAWYAKKAEVLQDDMKREYPSTPAEAFEQSIEGAYYASQMRFLRK 338

Query: 303 EEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
            + ++ E   +   P+    D+     D   + F +
Sbjct: 339 NKRITAEVQVNPSLPVFTAWDLGM--NDTMAIWFAQ 372


>gi|325126369|gb|ADY85699.1| Putative helicase [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 1046

 Score = 51.5 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 62/192 (32%), Gaps = 28/192 (14%)

Query: 45  LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
           LE   +P+ +Q E ++ +             + +K  + A  G+GKT + A+     ++ 
Sbjct: 316 LETSIRPYNYQQEILDRMQA------EREVYSHYKNLLVAATGVGKTVIAAFDFKRYLAE 369

Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
            P   ++ +A+ +  L+ +L     + L+     H    Q  +   S  +          
Sbjct: 370 HPHARLLFVAHRQEILEQSLQK-FREVLNDFNFGHLLVGQYKTDDVSQLFV--------- 419

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
                       S           + +   +  DE         + +    +   P    
Sbjct: 420 ---------SIQSFNSEKIADLLPSDYYDFIIIDEFHHAAAKSYQKL---LSHFKPKILL 467

Query: 225 IMTSNTRRLNGW 236
            +T+   R++G 
Sbjct: 468 GLTATPDRMDGQ 479


>gi|269838926|ref|YP_003323618.1| hypothetical protein Tter_1890 [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269790656|gb|ACZ42796.1| hypothetical protein Tter_1890 [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 534

 Score = 51.5 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/308 (9%), Positives = 73/308 (23%), Gaps = 48/308 (15%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
             +Q++    +         +        A+   R  GK  + A ++  L+      G  
Sbjct: 86  RPYQVDAAREILRAVERGGGDM------LAVVFSRQAGKDEMLAQLLAMLLWKYRWRGGQ 139

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           ++ +  +           +   L     R    ++   +                     
Sbjct: 140 VVVVQPTMQPQGMISRRRLLDRLPGALVRGLLRVEENMV----------------AVGKA 183

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
           ++T  + S E             + +  +EA         ++              M + 
Sbjct: 184 SVTFLSASPEASARGNTAS----LLLVANEAQDISPDRWDAVFDPMAASTNATTIFMGTV 239

Query: 230 TRRLN-----GWFYDIFNIPLEDWKRYQIDTRTVEGIDS---GFHEGIISRYGLDSDVAR 281
                       +     + +   + + +  + V           +  I++ G      R
Sbjct: 240 WTSRTLLARQMRYLRQLELEVGRRRVFMVPWQEVARHVPAYGERVQARIAQLGRHHPFVR 299

Query: 282 IEILGQFPQQEVNNFIPHNYIEEAMS---REAIDDLYAPLIMGCDIAGE--------GGD 330
            E   +    +   F P    E       R+ +           D+ GE          D
Sbjct: 300 TEYCLE-ELSDDGGFFPPAVTERMRGDHPRQLLPTPGRTYAALLDVGGEDLAAGPSPRRD 358

Query: 331 KTVVVFRR 338
            T +    
Sbjct: 359 STALTIVE 366


>gi|209885280|ref|YP_002289137.1| large subunit putative phage terminase [Oligotropha carboxidovorans
           OM5]
 gi|209873476|gb|ACI93272.1| large subunit putative phage terminase [Oligotropha carboxidovorans
           OM5]
          Length = 534

 Score = 51.5 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/374 (12%), Positives = 104/374 (27%), Gaps = 64/374 (17%)

Query: 4   LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63
           +       + E+ + L + +  + F   +        K +      Q   W    +  + 
Sbjct: 1   MRPAWLFDDSEIADPLGYGQRAVDFLRALKH-----PKSRLAGRAFQLDPWVERLVRRIY 55

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM---LWLISTRPGMSIICIANSETQL 120
               ++      T+F       RG  KT++ A ++    +     P    +  A    Q 
Sbjct: 56  GPRDADGQRQVRTVFAMV---PRGARKTSIGAALVCLHTFGAERVPNGQTVSAAADAKQA 112

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           +   + E +  +      H   + +  L       ++     G   +  +    T     
Sbjct: 113 R-IAYDEATGII------HADPIIAKKLKLRPGTYKIQHVRKGATYEAISSDGAT----- 160

Query: 181 PDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
                  H      + +DE        + +++     + + +   I T+  R      +D
Sbjct: 161 ------QHGRTVNFLLSDEIHAWKKRDLWEALRTSLAKTSESLHVITTTAGRGQENLAFD 214

Query: 240 IFNIPLE----------------------DWKRYQIDTRTVEGIDSGFHE--------GI 269
           I+                           DWK   +      G+  G+ +          
Sbjct: 215 IYEYAKRVASGEIEDPTFLPVLFEPDKGADWKDEAVWHEVNPGLALGYPDIKGLRAMARE 274

Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLIMGCDIAGEG 328
                 D D  +   L  +P    + F+     +E     +          +  D++   
Sbjct: 275 AESRPSDQDAFKQYHLNFWPDHSSSPFVDMATYDEGAEPIDLTALEGGECWLAADLS-SS 333

Query: 329 GDKTVV--VFRRGN 340
            D TV+   FR G+
Sbjct: 334 TDLTVIIAAFREGD 347


>gi|145514572|ref|XP_001443191.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124410569|emb|CAK75794.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1510

 Score = 51.5 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 52/188 (27%), Gaps = 18/188 (9%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              I A  G GKT +  + ML +    P   ++ IA  +   K  L      W   L   
Sbjct: 743 NILIGAPTGSGKTIMAEFAMLRVFKQSPQFKVVYIAPLKAIAKERL----KDWTKRLKEI 798

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
           +   ++    +     A L    +    + +    R++     +            +  D
Sbjct: 799 NKNVLELTGDYTPDLQALLKAHVLITTPEKWDGISRSW-----NNREYVR--QTCLLIFD 851

Query: 199 EASGTPDIINKSILGFFT-------ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY 251
           E         + +    +       + N     I  S          + F +    +  +
Sbjct: 852 EIHLLGQDRGQVLEVIVSRMNSLSYDTNKKTRMIGLSTAMANGLDVSNWFGVKKGRFYNF 911

Query: 252 QIDTRTVE 259
           +   R V 
Sbjct: 912 KPSCRPVP 919


>gi|327333194|gb|EGE74918.1| hypothetical protein HMPREF9337_00782 [Propionibacterium acnes
           HL096PA3]
          Length = 443

 Score = 51.5 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/307 (13%), Positives = 87/307 (28%), Gaps = 41/307 (13%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE--VSKWLSMLPHRH 139
           +   R  GK  +   + L+  + + G  I+  A+     +          +     P  +
Sbjct: 4   VFVPRQNGKNAILEVVELFKATIQ-GRRILHTAHELKSARKAFMRLRSFFENERQFPDLY 62

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
              ++S+          L         K          E    +           +  DE
Sbjct: 63  R-MVKSIRATNGQEAIVLHHPDCATFEKKCGCPGWGSVEFVARSRGSARGFTVDDLVCDE 121

Query: 200 ASGTPDIINKSILGFFT-ELNPNRFWIMTSNTR------------------RLNGWFYDI 240
           A    D   +++L   +   + +   I                            + +  
Sbjct: 122 AQELSDEQLEALLPTVSAAPSGDPQQIFLGTPPGPLADGSVVLRLRGQALGGGKRFAWTE 181

Query: 241 FNIPLE--------DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ- 291
           F+IP E         W++   DT    G    F         + +     E LG + +  
Sbjct: 182 FSIPDESDPDDVSRQWRKLAGDTNPALGRRLNFGTVSDEHESMSAAGFARERLGWWDRGQ 241

Query: 292 EVNNFIPHN-YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV----FRRGNIIEHIF 346
             ++ IP + +++ A+   A+       + G   +  G D+  +        G  +E I 
Sbjct: 242 SASSVIPADKWVQSAVGEAALV---GGKVFGVSFSRSG-DRVALAGAGRTDAGVHVEVID 297

Query: 347 DWSAKLI 353
             S  ++
Sbjct: 298 GLSGTIV 304


>gi|320198795|gb|EFW73395.1| Phage terminase, ATPase subunit [Escherichia coli EC4100B]
          Length = 603

 Score = 51.5 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/324 (12%), Positives = 79/324 (24%), Gaps = 44/324 (13%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             W  E +    +HC  +            I   R +G T   AW             + 
Sbjct: 145 DTWAQEHLFEYQLHCREHKGEDWRF-----ILKSRQVGMTYYFAWEAFEDAVITGDNQVF 199

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A+           E+ +   +   ++ F +     +       +L       S     
Sbjct: 200 FSASRSQS-------EIFREYIVQIAQNHFGVTLTGKNIRLSNGAILRFLSTNASTAQGF 252

Query: 172 TCRTYSEER-----------PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220
               Y +E              + +  HN +    F+  ++ T           +   +P
Sbjct: 253 NGHLYGDEVFWIPKFTRLHEVASAMATHNKYRTTYFSTPSAKTHQAYPVWTGEAWRGDDP 312

Query: 221 NRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280
            R  +   N              P + W+        +EG      +    R        
Sbjct: 313 KRKGVKFPN----ESEMCQGILCPDQIWRYIITMEDAIEGGLGALVDIERLRNKYSPTAF 368

Query: 281 RIEILGQFPQQEVNNFIPHNY-----IEEAMSREAIDDLYAP-----LIMGCDIAGEGGD 330
            +  + QF     +     +      ++ A   +       P     +  G D +  G D
Sbjct: 369 AMLYMCQFVD-SKDAVFKFSALVGCEVDRATWGDFDLTATRPFGNREVWAGFDPSRSG-D 426

Query: 331 KTVVVFR-----RGNIIEHIFDWS 349
            +  V        G     +  W 
Sbjct: 427 NSTFVLIAPPIEDGERFRVLAVWQ 450


>gi|58040880|ref|YP_192844.1| Phage DNA packaging protein [Gluconobacter oxydans 621H]
 gi|58003294|gb|AAW62188.1| Phage DNA Packaging Protein [Gluconobacter oxydans 621H]
          Length = 435

 Score = 51.5 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/293 (11%), Positives = 74/293 (25%), Gaps = 53/293 (18%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK-NTLWAEVSKWLSMLPHR 138
             +  G   GKT L    ++      PG       +    LK   +     K + +    
Sbjct: 23  ILLRGGSRSGKTFLLVRAVVIRAVKAPGSRHGIFRHRFNALKHTIIGDTFPKVMRLC--- 79

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                         +     +  + + +    +     S +R +            V+ +
Sbjct: 80  ---------FPDLPYTLNRTDWYVTLPNGSEILFHGLDSSDRTEK---ILGLEFATVYMN 127

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMT-----SNTRRLNGWFYDIFNIP--------- 244
           EAS        +           +  +       +N    + W Y +F            
Sbjct: 128 EASQIS----YAARNMLLTRLAQKTCLSVKEYIDANPPTTSHWLYSLFEQKIEPKSGEPL 183

Query: 245 --LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302
              +D+   QI+  +     S  +   +          +  + G +           + I
Sbjct: 184 PYPDDYATMQINPDSNRANLSPEYLAQLEALPEKER--QRFLFGNYQTAIDGALWTLDRI 241

Query: 303 EEAMS-----REAIDDLYAPLIMGCDIAG------EGGDKTVVVF----RRGN 340
                     R A+      +++  D +G         D+  +      R GN
Sbjct: 242 RRLAQVTNETRAAVLADMRRIVVSVDPSGCSGNEDYKSDEIGISVCGIDRDGN 294


>gi|29374972|ref|NP_814125.1| hypothetical protein EF0333 [Enterococcus faecalis V583]
 gi|29342430|gb|AAO80196.1| conserved hypothetical protein TIGR01630 [Enterococcus faecalis
           V583]
          Length = 418

 Score = 51.5 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/281 (16%), Positives = 84/281 (29%), Gaps = 34/281 (12%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           + A RG  KTT  A  +  L+   P  +II +  ++T +      E+   ++ +    +F
Sbjct: 48  LLAHRGSFKTTTLAIAIALLMVLFPNKNIIFLRKTDTDV-----VEIILQVAKVLSSKYF 102

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
           +    +L+       L E +  ID+   T T  T        +      H   V  D+  
Sbjct: 103 KTLVFALYGVEL-VLLKETTTEIDTNLKTSTRGTSQLLGMGIYASLTGKHADIVITDDIV 161

Query: 202 GTPDIINKS--------ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253
              D ++++                N    +I T            +           + 
Sbjct: 162 NIKDRVSRAEREKTKLQYQELQNVKNREGRFINTGTPWHKEDAISKM-------PNVKKF 214

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
           D      ID    + +  +  +   +       +      + F    YI+   +   I +
Sbjct: 215 DCYETGLIDKEQRKAL--QQSMTPSLFAANYELKHIADSESLFTAPTYID---NTNLIYN 269

Query: 314 LYAPLIMGCDIAGEGGDKTVVVFR----RGNIIEHIFDWSA 350
                +   D A  GGD T          G II     W  
Sbjct: 270 G----VAHIDAAYGGGDSTAFTIFKEQKDGTIIGFGKKWQK 306


>gi|104774537|ref|YP_619517.1| putative helicase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|103423618|emb|CAI98564.1| Putative helicase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
          Length = 1044

 Score = 51.5 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 61/192 (31%), Gaps = 28/192 (14%)

Query: 45  LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
           LE   +P+ +Q E ++ +             + +K  + A  G+GKT + A+     ++ 
Sbjct: 314 LETSIRPYNYQQEILDRMQA------EREVYSHYKNLLVAATGVGKTVIAAFDFKRYLAE 367

Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
            P   ++ +A+ +  L+ +L     + L+     H    Q  +   S  +          
Sbjct: 368 HPHARLLFVAHRQEILEQSLQK-FREVLNDFNFGHLLVGQYKTDDVSQLFV--------- 417

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
                       S           + +   +  DE         + +    +   P    
Sbjct: 418 ---------SIQSFNSEKIADLLPSDYYDFIIIDEFHHAAAKSYQKL---LSHFKPKILL 465

Query: 225 IMTSNTRRLNGW 236
            +T+   R+ G 
Sbjct: 466 GLTATPDRMEGQ 477


>gi|9627915|ref|NP_042313.1| terminase subunit [Lactococcus phage bIL67]
 gi|522258|gb|AAA74327.1| terminase subunit [Lactococcus phage bIL67]
          Length = 518

 Score = 51.5 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/292 (12%), Positives = 82/292 (28%), Gaps = 44/292 (15%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
            +  GR   K+ L+  + L  +     P   I  +A  + Q +  L        +     
Sbjct: 80  VVIVGRSNAKSILDVMIALIELFLFPKPNSVIALMATKKDQAEKILMKHFRAMGN----- 134

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                Q   ++      +L ++ + +       +  T                   V  D
Sbjct: 135 ----CQGTIINKFKNQFKLNKEQIIVKDNSILKSKGTEISIYASNEDTLDGGREQLVIID 190

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSN----------------TRRLNGWFYDIFN 242
           E          +I     +     F   T+N                  + + + + +F 
Sbjct: 191 EFGAFKKNPLITIRQGLRKNKGTLFISTTNNVIRGGAYDDELESWKEWVKDDDFSHWVFY 250

Query: 243 IPLEDWKRYQIDTR------------TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290
             L+D+   +  ++            T+E I   F   I +   +   + +   L     
Sbjct: 251 YALDDYDEVKDSSKYIKANPALGYTLTLEDIQKDFIGAIGNPVKMAKIITKRFNLSM--- 307

Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDK-TVVVFRRGNI 341
            +         +++ +    +D     + +G D +  G    TV+ +R    
Sbjct: 308 TDSTTIFTKQIVDKCLV-PPLDFEGRLVAIGSDFSVRGDVWGTVIGYRENGH 358


>gi|229096952|ref|ZP_04227921.1| Prophage LambdaBa02, terminase, large subunit [Bacillus cereus
           Rock3-29]
 gi|228686562|gb|EEL40471.1| Prophage LambdaBa02, terminase, large subunit [Bacillus cereus
           Rock3-29]
          Length = 562

 Score = 51.5 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/323 (11%), Positives = 83/323 (25%), Gaps = 38/323 (11%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
             WQ   + ++    H +            I  GR  GKTT+ + +  + ++    PG  
Sbjct: 80  QPWQHFVIGSLYGWVHKDTGYRRFREGLIFI--GRKNGKTTMISGLSNYAVAKDNEPGAR 137

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK-- 167
           +  +AN++ Q    L+ E    +   P       ++            +E       K  
Sbjct: 138 VYVLANTKQQAGE-LFDESRAMVQKSPFLRKHLRENQKGIFHDKTHSKIEPRASDSKKLD 196

Query: 168 ---------HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--------KS 210
                          + +                M V+   A    +             
Sbjct: 197 GLNTHLGIFDEIHEFKNFKLINVIKKSRGARKQPMIVYITTAGYQLEGPLVQYYEIATDV 256

Query: 211 ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGII 270
           + G   +     F     +   +      I   P          +  +  +   ++    
Sbjct: 257 LEGVIDQDRKFYFMAEMDSVDEIENPELWIKANPN------MGVSLDLPSLIDDWNTDKH 310

Query: 271 SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLIMGCDIAGEGG 329
           +    +  + +   L  F   +  +F+    ++      +         + G D++    
Sbjct: 311 TDAEKNDWITKQFNL--FVDNDEMSFVGIEILKRNEGVIDIKGLAGKECVAGYDLSAT-E 367

Query: 330 DKTVVV----FRRGNIIEHIFDW 348
           D T          GN+      W
Sbjct: 368 DFTSACLEFPLDDGNVFVLSHSW 390


>gi|313124420|ref|YP_004034679.1| DNA or RNA helicase of superfamily ii [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|312280983|gb|ADQ61702.1| DNA or RNA helicase of superfamily II [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 1046

 Score = 51.5 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 59/192 (30%), Gaps = 28/192 (14%)

Query: 45  LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
           LE   +P+ +Q E ++ +               ++  + A  G+GKT + A+     ++ 
Sbjct: 316 LETSIRPYNYQQEILDRLQA------EREVYGHYRNLLVAATGVGKTVIAAFDFKRYLAE 369

Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
            P   ++ +A+ +  L+ +L                       +     + +LL      
Sbjct: 370 HPHARLLFVAHRQEILEQSLQK------------------FREVLSDFNFGQLLVGQYKT 411

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
           D           S           + +   +  DE         + +    +   P    
Sbjct: 412 DDVSQLFVS-IQSFNSEKMADLLPSDYYDFIIIDEFHHAAAKSYQKL---LSHFKPKILL 467

Query: 225 IMTSNTRRLNGW 236
            +T+   R++G 
Sbjct: 468 GLTATPDRMDGQ 479


>gi|75675737|ref|YP_318158.1| phage terminase [Nitrobacter winogradskyi Nb-255]
 gi|74420607|gb|ABA04806.1| phage Terminase [Nitrobacter winogradskyi Nb-255]
          Length = 588

 Score = 51.5 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/371 (11%), Positives = 98/371 (26%), Gaps = 58/371 (15%)

Query: 3   RLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQP---HRWQLEFM 59
           +   T  +    + ++      +  F++ +        +   +  ++ P     WQ   +
Sbjct: 22  QRDRTSGEERGLVFDVHAAQRAIGFFRDVLTVEVEERDEYGEVSTYASPFNLQPWQAFII 81

Query: 60  EAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTRPGMSI-ICIANSE 117
            ++        N      F+ A +  G+G GK+ L A +  +++     +   +  A ++
Sbjct: 82  GSLF----GWKNALGFRRFRRAYVEIGKGNGKSPLAAGIGHYMLLGCRKLRAEVYSAATD 137

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
                 L+ +        P        +L        A  + +         +      S
Sbjct: 138 KDQAAILFRDAVAMWERSP--------ALRRRLKPKGANPVWELHTSRPGVNSYFKPISS 189

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
           ++      G           DE    PD     ++   T+ N        +N+       
Sbjct: 190 DK-----KGKSGIRPYCALIDEVHEHPDNSVIEMMRAGTKGNQEALLFEITNSGFDKKTV 244

Query: 238 YDIFNIPL----------EDWKRYQIDTRTVEG------------------IDSGFHEGI 269
               +             + W  +  +    +                   I   F    
Sbjct: 245 CGQEHDMSVRILKREFENDAWFAFIANLDETDDPFEDESCWPKANPNLGVSIQPAFIREQ 304

Query: 270 ISRYGL---DSDVARIEILGQFPQQEVNNFIPHNYIEEA---MSREAIDDLYAPLIMGCD 323
           +           + R     Q+ +   +  IP    E+    +  + +     P   G D
Sbjct: 305 VQEAQGMPSKEGLVRRLHFCQWTESATSA-IPRKVWEDCEGDVDVDKLTADNVPCYGGLD 363

Query: 324 IAGEGGDKTVV 334
           ++    D T  
Sbjct: 364 LSRA-RDLTAF 373


>gi|324504396|gb|ADY41899.1| ATP-dependent RNA helicase DDX20 [Ascaris suum]
          Length = 937

 Score = 51.5 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/211 (12%), Positives = 64/211 (30%), Gaps = 18/211 (8%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLI-STRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136
           F   + A  G GKT + A M L  + + R    ++ IA +          E++  +++  
Sbjct: 57  FDMLVQAKSGTGKTLVFALMALEGLNAQRRQPQVMIIAPT---------REIAMQIAVTV 107

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
            R    +  + +   G  +   +    I    +     T    +          H     
Sbjct: 108 RRLAPPVIHVGVFVGGGRSVADDIK-EIRKGVHIAVGTTGRLCQLVNDDLLPTNHVHLFV 166

Query: 197 NDEASGTPDIINKSILGFF--TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254
            DEA    +   +  + F   +  N  +  + ++            +          +++
Sbjct: 167 LDEADKLMEENFQKDINFLFSSLPNNKQMAVFSATYPGDLDETLARYMKKAH---LIRLN 223

Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
              V+ +    +  +   Y  D   +   +L
Sbjct: 224 AEDVQLLGIKQYVAM--SYSEDGPTSLHRLL 252


>gi|24374493|ref|NP_718536.1| phage terminase large subunit [Shewanella oneidensis MR-1]
 gi|24349075|gb|AAN55980.1|AE015735_14 conserved hypothetical protein [Shewanella oneidensis MR-1]
          Length = 581

 Score = 51.1 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/344 (10%), Positives = 87/344 (25%), Gaps = 58/344 (16%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
            WQ   + ++        +      F+   + +G+G GK+ L A + L+ +         
Sbjct: 91  DWQAFIVGSLF----GWKDADGTRRFRMCYVESGKGSGKSPLAAGIGLYGLVADGEASAE 146

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I   A  + Q    L+ +    ++  P                  + L +   G    + 
Sbjct: 147 IYAAATKKDQAM-VLFRDAVSMVNQSP---------------QLSSRLKKSGTGQSVWNL 190

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
               +        +  G           DE     +     ++   T+        M +N
Sbjct: 191 AYLAKNSFFRPISSDNGQSGPRPHMALIDEVHEHKNNNVVEMMRAGTKGRKQALIFMITN 250

Query: 230 ----------------------TRRLNGWFYDIFNIPL------EDWKRYQIDTRTVEGI 261
                                 T+  + +F  I ++        ++    + +       
Sbjct: 251 SGHDRTSVCYSYHEYGKAICAGTKEDDSFFAFICSLDEGDDPINDESCWQKANPSLGHTF 310

Query: 262 DSGFHEG---IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
              +                + R     Q+            +++     +  +      
Sbjct: 311 THKYLREQVTQAKGMPAKESIVRRLNFCQWVDSASPWLSADTWMDCEDDFDISELYGEEC 370

Query: 319 IMGCDIAGEGGDKTVVVFR--RGNIIEHIFDWSAKLIQETNQEG 360
             G D++G   D T +     R   +  +  W+ K      +  
Sbjct: 371 YGGLDLSGT-RDLTALALYFPRVKTLL-VDLWTPKDTLLDRERT 412


>gi|291543425|emb|CBL16534.1| phage terminase, large subunit, PBSX family [Ruminococcus sp.
           18P13]
          Length = 432

 Score = 51.1 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/259 (11%), Positives = 68/259 (26%), Gaps = 24/259 (9%)

Query: 66  CHSNVNNSNPTIFKCAISAGRGIGKTTLNA-WMMLWLISTRPGMSIICIANSETQLKNTL 124
                +  +  I   A+ +    GKTT  +   + W ++T    S      + T L+  +
Sbjct: 18  SRRETSGYDAIICDGAVRS----GKTTAMSLGFVSWAMTTFTRQSFAICGRTVTALRRNV 73

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
              + + L  L      ++               +  + I  +        +  +   + 
Sbjct: 74  VVPLVEMLGNLGFTCIEKLS--------------KNYIDISMQGRCNRFYLFGGKDESSA 119

Query: 185 VGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244
                     +F DE +  P    +  +   +      ++    N      WFY  +   
Sbjct: 120 ALIQGITLGGIFLDEVALMPRSFVEQAIARCSISGSRLWFNC--NPDHPYHWFYREWICK 177

Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE 304
             +     +     + +          R           ILG++         P     +
Sbjct: 178 AAEKNALYLHFTMEDNLSLTPRIRARYRRLYAGVFYDRFILGKW-TASSGLVYP--MFRK 234

Query: 305 AMSREAIDDLYAPLIMGCD 323
                      +  ++ CD
Sbjct: 235 DTHLFTEPPACSRFVVSCD 253


>gi|227522721|ref|ZP_03952770.1| terminase large subunit [Lactobacillus hilgardii ATCC 8290]
 gi|227090169|gb|EEI25481.1| terminase large subunit [Lactobacillus hilgardii ATCC 8290]
          Length = 452

 Score = 51.1 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 85/294 (28%), Gaps = 33/294 (11%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI----STRPGMSIIC 112
           +  + ++ H         P         GRG  K++  +  +L ++         ++++C
Sbjct: 10  KISQVINPHFKKMWTTKRPY---VIAKGGRGSFKSSTISLKLLTMLKKQAQLGHKVNVVC 66

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           I  +   L+++++ ++   + ML     F      +  +            I S      
Sbjct: 67  IRENTVNLRDSVYGQICWAIDMLNMTDEFRYSVSPMRIT-----------HISSGSAFYF 115

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPN----RFWIMT 227
              Y  ++P+        + +A++ +EA+      +       F               +
Sbjct: 116 ---YGGDKPEKLKSNTIQNVIALWYEEAANFKSAEVFDQTNPTFIRQKSPWVNDVKVFYS 172

Query: 228 SNTRR-LNGWFYDIFNIPLEDWKRYQIDTRTVEG----IDSGFHEGIISRYGLDSDVARI 282
            N  R    W  +      +D + +   +  ++      DS     I +    D +  + 
Sbjct: 173 YNPPRNPYDWINEWIAKQEQDPQCFIDTSTYLDDKLGITDSQQLTLIETYKKNDPEYYKW 232

Query: 283 EILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
             LG+       N                DD    L    D        T +  
Sbjct: 233 LYLGK-VIGLGTNVYNMKLFHPLTEL-INDDPLVTLYYSIDAGHINSATTCLAI 284


>gi|227512497|ref|ZP_03942546.1| terminase large subunit [Lactobacillus buchneri ATCC 11577]
 gi|227084275|gb|EEI19587.1| terminase large subunit [Lactobacillus buchneri ATCC 11577]
          Length = 452

 Score = 51.1 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 85/294 (28%), Gaps = 33/294 (11%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI----STRPGMSIIC 112
           +  + ++ H         P         GRG  K++  +  +L ++         ++++C
Sbjct: 10  KISQVINPHFKKMWTTKRPY---VIAKGGRGSFKSSTISLKLLTMLKKQAQLGHKVNVVC 66

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           I  +   L+++++ ++   + ML     F      +  +            I S      
Sbjct: 67  IRENTVNLRDSVYGQICWAIDMLNMTDEFRYSVSPMRIT-----------HISSGSAFYF 115

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPN----RFWIMT 227
              Y  ++P+        + +A++ +EA+      +       F               +
Sbjct: 116 ---YGGDKPEKLKSNTIQNVIALWYEEAANFKSAEVFDQTNPTFIRQKSPWVNDVKVFYS 172

Query: 228 SNTRR-LNGWFYDIFNIPLEDWKRYQIDTRTVEG----IDSGFHEGIISRYGLDSDVARI 282
            N  R    W  +      +D + +   +  ++      DS     I +    D +  + 
Sbjct: 173 YNPPRNPYDWINEWIAKQEQDPQCFIDTSTYLDDKLGITDSQQLTLIETYKKNDPEYYKW 232

Query: 283 EILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
             LG+       N                DD    L    D        T +  
Sbjct: 233 LYLGK-VIGLGTNVYNMKLFHPLTEL-INDDPLVTLYYSIDAGHINSATTCLAI 284


>gi|27476053|ref|NP_775255.1| terminase [Pseudomonas phage PaP3]
 gi|27414483|gb|AAL85569.1| terminase [Pseudomonas phage PaP3]
          Length = 482

 Score = 51.1 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 72/289 (24%), Gaps = 35/289 (12%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML---------WL 101
           P+ WQ +F+ A                       G   GKT   A++M          W 
Sbjct: 28  PYGWQEKFIAASSNCAQ------------LLAMTGNRCGKTYTGAFIMACHLTGRYPEWW 75

Query: 102 ISTRPGMSIICIAN--SETQLKNTLWAEV-SKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
              +    + C A   S    ++ L +E+   W +          +   +       +  
Sbjct: 76  TGRKFDKPVNCWAAGISTDTTRDILQSELLGDWKNPEAFGTGMIPKEDIVKTERREGKPG 135

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218
                +             +    +      T    ++ DE     DI  + +    T  
Sbjct: 136 CVQAVMVRHVSGGLSSLIFKSYEMSQDKFMGTAIDVIWLDEECP-KDIYTQCVTRTATTG 194

Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK-RYQIDTRTVEGIDSGFHEGIISRYGLDS 277
                  +T             F   L+  +            +     E ++S Y    
Sbjct: 195 G---IVYLTFTPEHGLTEIVKDFLQDLKPGQFLIHASWEDAPHLSPEVKEQLLSVYSPAE 251

Query: 278 DVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA-PLIMGCDIA 325
              R E     P        P   +EE    E  D       I+G D+ 
Sbjct: 252 RRMRAEG---IPMLGSGVVFP--ILEEKFVCEPFDIPDHFHRIIGIDLG 295


>gi|85707067|ref|ZP_01038155.1| phage Terminase [Roseovarius sp. 217]
 gi|85668353|gb|EAQ23226.1| phage Terminase [Roseovarius sp. 217]
          Length = 537

 Score = 51.1 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/355 (14%), Positives = 101/355 (28%), Gaps = 67/355 (18%)

Query: 25  VLSFKNFVMRFFPW-----GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFK 79
           +     +  R   W       K   L H  Q   WQ   +  +    H + +     +  
Sbjct: 15  IADPLGYGERAVTWLRRLKHPKNPALGHPFQLDPWQERIVRKIYGPRHEDGSRVVRRVVL 74

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTR---PGMSIICIANSETQLKNTLWAEVSKWLSMLP 136
                 RG  KT+L A + L  +      PG   +  A++  Q    L+ E +  +    
Sbjct: 75  ---LLPRGNRKTSLAAAITLLHLIGPERLPGGLTVSAASAREQAME-LFNEAATIIQH-- 128

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
                      L       E + +          +                H      V 
Sbjct: 129 --------DRRLSKHLSVREYVSRIAFNQIGARYVA-------VASDGKVQHGKTPNVVI 173

Query: 197 NDEASGTPD----IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI--------- 243
            DE             +++     ++      I T++ R      ++             
Sbjct: 174 ADELHAWEGRAGLRQWEALDSALVKVPGTLMIIATTSGRGQENLAWNQVEYAIKVQKGDI 233

Query: 244 -------------PLEDWKRYQIDTRTVEGIDSGFHEGI--------ISRYGLDSDVARI 282
                        P +DW+   +   T  G+  G+ + +              + D    
Sbjct: 234 DDPATLPVIFMVEPTDDWRDEDVWYATNPGLRHGYPDIMGFRDKAQKAEHSPFERDSFLQ 293

Query: 283 EILGQFPQQEVNNFIPHNYIEEA---MSREAIDDLYAPLIMGCDIAGEGGDKTVV 334
             L ++  Q  + F+  +  +E    +  + ++ + AP  +G D++ +  D TVV
Sbjct: 294 FNLNRWLDQSTSPFVEMHTYDEGAHEVDLDEMEMVQAPCWLGVDLS-KNEDLTVV 347


>gi|294138788|ref|YP_003554766.1| helicase [Shewanella violacea DSS12]
 gi|293325257|dbj|BAI99987.1| helicase [Shewanella violacea DSS12]
          Length = 1056

 Score = 51.1 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 62/185 (33%), Gaps = 28/185 (15%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           PH+ Q+E +E +      +   +     +  I A  G GKT ++A+         P   I
Sbjct: 323 PHQHQIEILERL------DAERNLHGRNRNLIVAATGTGKTLISAFDFKRFYQENPTAKI 376

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + IA+ E  LK  +  E  + +   P+                + EL       DS    
Sbjct: 377 LFIAHREEILKQAI--ESFRAVLKQPN----------------FGELWVGQHKPDSYDQ- 417

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
           +     +       +   + +   +  DE         +  + +F+   P     +T+  
Sbjct: 418 LFASIQTFNNQLDNMNLSSDYYDFIVIDEVHHVSAESYRKFISYFS---PKILLGLTATP 474

Query: 231 RRLNG 235
            R +G
Sbjct: 475 ERHDG 479


>gi|209972883|ref|YP_002300330.1| gp2.11 [Bacillus phage SPO1]
 gi|209871203|gb|ACI90959.1| gp2.11 [Bacillus phage SPO1]
          Length = 547

 Score = 51.1 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/251 (9%), Positives = 64/251 (25%), Gaps = 42/251 (16%)

Query: 9   QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLE--HFSQP---HRWQLEFMEAVD 63
           +  ++++   L++    L    +         KG PL       P     WQ+  +E   
Sbjct: 3   KYTKEQIQRALINRTPTLYALRYRYI------KGNPLTFKSTKNPIKHRPWQIAILED-- 54

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
                             +   R +G + +     +W + T P ++ +     + Q+++ 
Sbjct: 55  ---QHPDK---------VVRKSRQLGLSEMAVTEFIWFLDTHPNVNGMYTFPRKEQMEDF 102

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
               ++      P           L           +   + +         +     + 
Sbjct: 103 SNTRIAPIFDESP----------YLSSRLDKKMNNVRLKKLVNGSAMFLRSAWGSALGE- 151

Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243
                      +  DE     D +  +        +        S           +F+ 
Sbjct: 152 -----GQAIDILGLDEYDRMKDGVELAFRESMKS-SAYGLMRRWSTPTIPGRGVDMLFSD 205

Query: 244 PLEDWKRYQID 254
             + +  ++ D
Sbjct: 206 SDQRYYHHKCD 216


>gi|303255666|ref|ZP_07341713.1| terminase large subunit [Streptococcus pneumoniae BS455]
 gi|302597338|gb|EFL64437.1| terminase large subunit [Streptococcus pneumoniae BS455]
          Length = 432

 Score = 51.1 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 83/291 (28%), Gaps = 25/291 (8%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTI--FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
           Q + +  +     +       +   ++  +   RG  K+   A   +  +      +++ 
Sbjct: 9   QNDIVVDLPKTVGAGYGQFWRSRSLYRV-VKGSRGSKKSKTTALNYVIRLLKYTWANLLV 67

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           I       K + + +     + L   H F+                   + +      I 
Sbjct: 68  IRRYSNTNKQSTYTDFKWAANQLKVAHKFKFNES------------LPEITVKETGQKIL 115

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI-----INKSILGFFTELNPNRFWIMT 227
            R   +E   T +          + +EA           + +SI G     +  +   +T
Sbjct: 116 FRGLDDELKITSITVDVGSLCWAWFEEAYQIETEDKFSTVVESIRGSLDVPDFFKQITVT 175

Query: 228 SNTRRLNGWFYDIF---NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
            N      W   +F        D        +  E +D    +     Y  +   ARI  
Sbjct: 176 FNPWNERHWLKRVFFDEETRRADTFATTTTYKCNEWLDEVDIKRYEDLYHTNPRRARIVC 235

Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335
            G++          +  +++    E + D    L +G D  G   D T + 
Sbjct: 236 DGEW-GVAEGLIYENVTVKDFNKDELLQDSANKLCIGLDF-GFTHDPTALC 284


>gi|30348532|emb|CAC84324.1| terminase [Saimiriine herpesvirus 2]
          Length = 683

 Score = 51.1 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 56/177 (31%), Gaps = 16/177 (9%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GKT +   ++  L+++   + +  +A+ +    N+++ E+   L       WF  +
Sbjct: 218 PRRHGKTWIVVAIISMLLTSVENIHVGYVAHQKHVA-NSVFTEIINTLQK-----WFPSR 271

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
            + +                          T                   ++ DEA+   
Sbjct: 272 YIDIKKENGTIIYKSPDKKP---------STLMCATCFNKNSIRGQTFNLLYIDEANFIK 322

Query: 205 DIINKSILGFFTELNPNRFWIMTSNT-RRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
                +ILGF  + +    +I + N+  R   + +++ N   +            + 
Sbjct: 323 KDSLPAILGFMLQKDAKLIFISSVNSGDRATSFLFNLKNASEKMLNIVNYICPDHKD 379


>gi|85058702|ref|YP_454404.1| phage terminase large subunit [Sodalis glossinidius str.
           'morsitans']
 gi|84779222|dbj|BAE73999.1| phage terminase large subunit [Sodalis glossinidius str.
           'morsitans']
          Length = 582

 Score = 51.1 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/338 (13%), Positives = 90/338 (26%), Gaps = 59/338 (17%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTRPGMS-- 109
            WQ   +  +        NN     F+ A + AG+G GK+ L A + L+ +         
Sbjct: 90  PWQCFIVGTLF----GWRNNEGQRRFRMAYVEAGKGSGKSPLAAGIGLYCLVADNEARAE 145

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           +   A  + Q    L+ +    +   P                  AE +++S G   +  
Sbjct: 146 VYAAATKKDQAM-ILFRDAVAMVDQSPK----------------LAERIQKSGGAGKEWN 188

Query: 170 TITCRTYSEERP-DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
               +  +  RP     G           DE           ++   T+        M +
Sbjct: 189 LAFLQARAFFRPISADDGQSGPRPHCALIDEIHEHKSNQVVEMMRAGTKGRQQALIFMIT 248

Query: 229 NTR-RLNGWFYDIFNIPL---------------------------EDWKRYQIDTRTVEG 260
           N+        YD                                 +     + +      
Sbjct: 249 NSGHNKTSVCYDYHEYGRKVAEGSIEDYSFFAFICSLDEGDDPFKDSGCWKKANPSLGHT 308

Query: 261 IDSGFHEG---IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE-EAMSREAIDDLYA 316
               + +              + R     Q+   E       +++  E  S +      +
Sbjct: 309 FSERYLQEQVTQARGMPAKESLVRRLNFCQWVDAENPWINSDSWMACEKTSLDLASLANS 368

Query: 317 PLIMGCDIAGEGGDKTVVVFRRG-NIIEHIFDWSAKLI 353
           P   G D++G+  D T +        + ++  W+ K  
Sbjct: 369 PCYGGLDLSGK-QDLTALALYWPEEKVAYVEFWTPKDT 405


>gi|9625990|ref|NP_040231.1| hypothetical protein SaHV2gp30 [Saimiriine herpesvirus 2]
 gi|267409|sp|Q01020|TRM3_SHV21 RecName: Full=Tripartite terminase subunit UL15 homolog; AltName:
           Full=DNA-packaging protein 29; AltName: Full=Terminase
           large subunit
 gi|74009|pir||QQBEM8 gene 29 protein - saimiriine herpesvirus 1 (strain 11)
 gi|60355|emb|CAA45657.1| unnamed protein product [Saimiriine herpesvirus 2]
          Length = 683

 Score = 51.1 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 56/177 (31%), Gaps = 16/177 (9%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GKT +   ++  L+++   + +  +A+ +    N+++ E+   L       WF  +
Sbjct: 218 PRRHGKTWIVVAIISMLLTSVENIHVGYVAHQKHVA-NSVFTEIINTLQK-----WFPSR 271

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
            + +                          T                   ++ DEA+   
Sbjct: 272 YIDIKKENGTIIYKSPDKKP---------STLMCATCFNKNSIRGQTFNLLYIDEANFIK 322

Query: 205 DIINKSILGFFTELNPNRFWIMTSNT-RRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
                +ILGF  + +    +I + N+  R   + +++ N   +            + 
Sbjct: 323 KDSLPAILGFMLQKDAKLIFISSVNSGDRATSFLFNLKNASEKMLNIVNYICPDHKD 379


>gi|131840060|ref|YP_001096069.1| ORF33 [Cyprinid herpesvirus 3]
 gi|106006039|gb|ABF81803.1| hypothetical protein [Cyprinid herpesvirus 3]
 gi|109706635|gb|ABG42861.1| ORF33 [Cyprinid herpesvirus 3]
          Length = 796

 Score = 51.1 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 48/153 (31%), Gaps = 9/153 (5%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GKTT+ + ++L  + +  G+ I+  A ++          V  ++     + WF   
Sbjct: 242 PRRCGKTTIVS-VVLGAMLSFMGIDIMVQAQNQNMASTI-RKNVQTFMDAYRDKTWF--- 296

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                         ++S+    +       T +     +       +      DEA+   
Sbjct: 297 --PDKFKYKDLTGTDKSLVYHFEPGVKDKMTTAHYLASSGNSARGQNPDICVVDEAAFVG 354

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
             +  S+L   T     +     S+    + W 
Sbjct: 355 ANLLVSVLPLMTVKGTKQIH--ISSPGSADSWI 385


>gi|193062794|ref|ZP_03043887.1| putative conserved hypothetical protein [Escherichia coli E22]
 gi|192931437|gb|EDV84038.1| putative conserved hypothetical protein [Escherichia coli E22]
          Length = 603

 Score = 51.1 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/324 (12%), Positives = 78/324 (24%), Gaps = 44/324 (13%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             W  E +    +HC  +            I   R +G T   AW             + 
Sbjct: 145 DTWAREHLFEYQLHCREHKGEDWRF-----ILKSRQVGMTYYFAWEAFEDAVITGDNQVF 199

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A+           E+ +   +   ++ F +     +       +L       S     
Sbjct: 200 FSASRSQS-------EIFREYIVQIAQNHFGVTLTGKNIRLSNGAILRFLSTNASTAQGF 252

Query: 172 TCRTYSEER-----------PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220
               Y +E              + +  HN +    F+  ++ T           +   +P
Sbjct: 253 NGHLYGDEVFWIPKFTRLHEVASAMATHNKYRTTYFSTPSAKTHQAYPVWTGEAWRGDDP 312

Query: 221 NRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280
            R  +                  P + W+        +EG      +    R        
Sbjct: 313 KRKGVAFPT----ESEMRQGILCPDQIWRYIITMEDAIEGGLGALVDIERLRNKYSPTAF 368

Query: 281 RIEILGQFPQQEVNNFIPHNY-----IEEAMSREAIDDLYAP-----LIMGCDIAGEGGD 330
            +  + QF     +     +      ++ A   +       P     +  G D +  G D
Sbjct: 369 AMLYMCQFVD-SKDAVFKFSALVGCEVDRATWGDFDLTAARPFGNREVWAGFDPSRSG-D 426

Query: 331 KTVVVFR-----RGNIIEHIFDWS 349
            +  V        G     +  W 
Sbjct: 427 NSTFVLIAPPIEDGERFRVLAVWQ 450


>gi|116514657|ref|YP_813563.1| superfamily II DNA/RNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093972|gb|ABJ59125.1| DNA or RNA helicase of superfamily II [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 1046

 Score = 51.1 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 62/192 (32%), Gaps = 28/192 (14%)

Query: 45  LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
           LE   +P+ +Q E ++ +             + +K  + A  G+GKT + A+     ++ 
Sbjct: 316 LETSIRPYNYQQEILDRLQA------EREVYSHYKNLLVAATGVGKTVIAAFDFKRYLAE 369

Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
            P   ++ +A+ +  L+ +L     + L+     H    Q  +   S  +          
Sbjct: 370 HPHARLLFVAHRQEILEQSLQK-FREVLNDFNFGHLLVGQYKTDDVSQLFV--------- 419

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
                       S           + +   +  DE         + +    +   P    
Sbjct: 420 ---------SIQSFNSEKIADLLPSDYYDFIIIDEFHHAAAKSYQKL---LSHFKPKILL 467

Query: 225 IMTSNTRRLNGW 236
            +T+   R++G 
Sbjct: 468 GLTATPDRMDGQ 479


>gi|116492768|ref|YP_804503.1| Phage terminase-like protein, large subunit [Pediococcus
           pentosaceus ATCC 25745]
 gi|116102918|gb|ABJ68061.1| Phage terminase-like protein, large subunit [Pediococcus
           pentosaceus ATCC 25745]
          Length = 632

 Score = 51.1 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/333 (14%), Positives = 95/333 (28%), Gaps = 50/333 (15%)

Query: 44  PLEHFSQPHR---WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           P     +P +   WQ +F+ A+ +   ++      +    ++S  RG GKT L A +  +
Sbjct: 88  PNVDTGEPTKLMPWQ-KFIMAMLIGWRNDDGGKRFSRAIVSVS--RGQGKTYLMAIITAY 144

Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLS--MLPHRHWFEMQSLSLHPSGWYAELL 158
                     + ++N +  + +  + + SK L            ++           +  
Sbjct: 145 SFLIE----SLGLSNQDYLVSSINYKQTSKILGYIKSMLAKIATIEPFKTLMQDSGLDTR 200

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFT 216
             S   D    +           +      + H      DE         I+K + G   
Sbjct: 201 TLSSQSDQVVMSSNNNKLRAISHEAGQYD-SFHFTTAIFDEIGEIKTRQKISKIVSGQVK 259

Query: 217 ELNPNRFWIMTSNTRRLNGWFYDIFNIP--------------------LEDWKRYQIDTR 256
             N     I T+       +  D   I                      +D         
Sbjct: 260 VRNKQFIQISTAYPDPTVPFHDDERMIQQAMEQDYLRDADTYLGLIWSQDDLNETYKPDT 319

Query: 257 TVEGIDSGFHEGIISRY------GLDSDV-------ARIEILGQFPQQEVNNFIPHNYIE 303
            V+                      DSD         + + L  + +Q  ++F+    +E
Sbjct: 320 WVKSNPLLDLPSQREVLLNGLTDKRDSDALSGTLNDFQNKNLNLWLEQSTDSFLKLPDVE 379

Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
           +A+ +    D    + +G D +    D T + F
Sbjct: 380 KAIVQSFSFD-DRQVYIGFDYSMF-SDNTALAF 410


>gi|301299551|ref|ZP_07205817.1| putative phage terminase, large subunit [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300214155|gb|ADJ78571.1| Terminase large subunit [Lactobacillus salivarius CECT 5713]
 gi|300852852|gb|EFK80470.1| putative phage terminase, large subunit [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 627

 Score = 51.1 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/333 (13%), Positives = 97/333 (29%), Gaps = 52/333 (15%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
                   ++   WQ +F+  +     +       +    +++  RG GKT L A +M +
Sbjct: 88  PNVDTGSPTELMDWQ-KFIFCMLFGWRNLEGRKRFSRAMVSVA--RGQGKTYLMAILMCY 144

Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKW--LSMLPHRHWFEMQSLSLHPSGWYAELL 158
                     + ++N +  + +  + + +K         +H  +      + +    +  
Sbjct: 145 SYFIE----SLGLSNQDYLVSSINFKQTNKIFGYIKTMMKHIVKTDMFKDYAATVGFKAQ 200

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFT 216
              M +  K+  +   ++   + D+F      H      DE       + I+K I G   
Sbjct: 201 NDQMIMKEKNNVLRAISHESGQYDSF------HFTTAIFDEIGEVKSREKISKIISGQVK 254

Query: 217 ELNPNRFWIMTSNTRRLNGWFYD-------IFNIPLEDWKRYQIDTRTVEGIDSGFHEGI 269
             N     I TS       +  D       +      D   +       + +D  F    
Sbjct: 255 VPNHQFIQISTSYPDPSVPFHEDQKMIQQAMEQDYKRDADNFLGLIWAQDSLDETFKPET 314

Query: 270 I--------------------------SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
                                           +    + + L  +  +  N+F+  + IE
Sbjct: 315 WYKSNPLLYLDSQKQVLMEGLQDKRDADMLSGNVADFQNKNLNLWLAEATNSFLKLSDIE 374

Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
            A+           + +G D +    D T + F
Sbjct: 375 RAIQPNFNI-EGRTVYIGYDYSMF-SDNTAIAF 405


>gi|188585871|ref|YP_001917416.1| conserved hypothetical protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350558|gb|ACB84828.1| conserved hypothetical protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 530

 Score = 51.1 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 49/434 (11%), Positives = 115/434 (26%), Gaps = 125/434 (28%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           M    S+ +KL++ L+   ++A+      NF+      G +  PL             + 
Sbjct: 1   MAVKTSSKKKLDKVLNNFELYAK------NFMKVVDITGEE-VPLT------------LN 41

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
               + + N++  N           R +G TTL+    ++L  TR  ++ + ++ +    
Sbjct: 42  EEQRYLYRNMDKYN------ICLKSRQLGITTLSCAYSVYLACTRKNVTSMIVSYNLEST 95

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           +   + ++    + +P                         + +++    +      +E 
Sbjct: 96  QEI-FNKLKSIYNSIPDDE---------RIKPKELRNNRYELLLENGSKVLVKTAGYKEL 145

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPD-----IINKSILGFFTELNPNRFWIMTSNTRRLNG 235
                             E +   +      +            P +  I+  +T     
Sbjct: 146 S------RGLTLSFAHLSEYAFWNEWVQTKGLMGLEQSLMKSDEPGKGQIIIESTANGLN 199

Query: 236 WFYDIFNIPLE---DWKRYQIDTRTVE-------GIDSGFHEGI---------------- 269
            FY++F    +    +K +  +    +        I   +++ I                
Sbjct: 200 KFYELFKSAEKGNSKYKPFFFNWIDNKKQFASEYDIAEKWYKSINKGNRLTTKDLTDETS 259

Query: 270 -----ISRYGLDSDVARI---------EILGQFPQQEVNNFIPH-------NYIEEAMSR 308
                     L   + R          E   ++P      FI           I + +  
Sbjct: 260 KKLYYEKGANLKQIMWRYWKLQDMTEEEFCQEYPSHSEQAFISSQKSIFDTEMIVKRLDN 319

Query: 309 EAIDDLYAPLI--------------------------MGCDIA-GEGGDKTVVVF--RRG 339
                    L                            G D+A G G D + ++   + G
Sbjct: 320 LLPPLPKEELADLPSKLKKYLNNGLDIYNRPKRERHFAGVDVASGSGADYSSIIVLNKDG 379

Query: 340 NIIEHIFDWSAKLI 353
              E +  +    +
Sbjct: 380 ---EQVASFYRNDV 390


>gi|262163925|ref|ZP_06031664.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus VM223]
 gi|262027453|gb|EEY46119.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus VM223]
          Length = 416

 Score = 51.1 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/318 (12%), Positives = 81/318 (25%), Gaps = 50/318 (15%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           +      FS+P + Q E +                       SA  G GKT   A   L 
Sbjct: 16  EAIEEMGFSRPTQVQAEAIPQALDG------------RDVLASAPTGTGKTAAFAIPALQ 63

Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
            +   P        I+ +  +         AE ++ L+     + F +     +      
Sbjct: 64  YLLDFPRRKAGPARILILTPTRELAMQV--AEQAQALAKNTRLNIFTITGGVQYQEHADI 121

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
               Q +        +                       +  DEA    D+     +   
Sbjct: 122 LATTQDI--------VVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173

Query: 216 TELNPNRFWIMTSNTRRLN------------GWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
           +     R   +  +                    +     P  + K+        + +  
Sbjct: 174 SAECRWRKQTLLFSATLEGRGVEGFTADLLKNPAHIDAEPPRRERKKISQWYHRADDMPH 233

Query: 264 --GFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP-- 317
                + I++     S V     E L     +     IP  +I+  M ++  ++      
Sbjct: 234 KVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMQQDRRNNAITRFR 293

Query: 318 -----LIMGCDIAGEGGD 330
                +++  D+A  G D
Sbjct: 294 EGSVNILLATDVAARGID 311


>gi|265763445|ref|ZP_06092013.1| PBSX family phage terminase, large subunit [Bacteroides sp. 2_1_16]
 gi|299145861|ref|ZP_07038929.1| putative phage terminase, large subunit, PBSX family [Bacteroides
           sp. 3_1_23]
 gi|263256053|gb|EEZ27399.1| PBSX family phage terminase, large subunit [Bacteroides sp. 2_1_16]
 gi|298516352|gb|EFI40233.1| putative phage terminase, large subunit, PBSX family [Bacteroides
           sp. 3_1_23]
          Length = 525

 Score = 51.1 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/249 (12%), Positives = 59/249 (23%), Gaps = 25/249 (10%)

Query: 90  KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLH 149
           K+ L +  ++      P +  +    +   LK + W  + K       +           
Sbjct: 80  KSYLGSCWLVSSCMRFPDIRAVVARKTLKSLKGSTWNTIKKVCKEWGLKEGVN------- 132

Query: 150 PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209
              +    L+  +   +    I            F    ++     F DE S   +   +
Sbjct: 133 ---YKINNLDGILTFWNDSVIIMQEMVDLPSDPNFERFGSSEYTIAFIDEVSEISERAIE 189

Query: 210 SILGFFTELNPNRFWIMT--SNTRRLNGWFYDIFNIP--------LEDWKRYQIDTRTVE 259
            +           F       +T     W    F            E             
Sbjct: 190 VLFSRLRWRTAETFKTARMMMSTNPCINWVRSRFVQDDEGNPVLCKEGEAYVPFSVFDNP 249

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN---NFIPHNYIEEAMS--REAIDDL 314
            I              D       + G +   + N    +   +  +  +   RE + D 
Sbjct: 250 DIQFVQTYVAALNKITDRATRERLLYGNWDFVDSNLMAAYWNFDGEKHLIERLREKVYDP 309

Query: 315 YAPLIMGCD 323
             P+I G D
Sbjct: 310 MKPIISGWD 318


>gi|308094637|ref|ZP_05891088.2| putative phage terminase, large subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|308091007|gb|EFO40702.1| putative phage terminase, large subunit [Vibrio parahaemolyticus
           AN-5034]
          Length = 528

 Score = 51.1 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/340 (12%), Positives = 95/340 (27%), Gaps = 37/340 (10%)

Query: 22  AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81
           A+ V+ F  F+        KGK      +   WQ   + ++    + +            
Sbjct: 19  AQRVIDFYKFIKHT-----KGKLARTVMKLMPWQQFCVGSIIGWVYKDTGFRRFKQANIW 73

Query: 82  ISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
           ++  R  GK+TL + + L+ +      G  I  IA  + Q K  ++ +  + LSM   + 
Sbjct: 74  VA--RKNGKSTLASGLALYFLIGDGETGAEIYSIAVKKDQAK-IVFDDAVRMLSMSELKE 130

Query: 140 WFEMQSLSL-----HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF-----VGPHN 189
              ++  S+                 S+   + H  I    +S +  + +          
Sbjct: 131 VLTVKRDSIAFEAEFAKFVPLASDSNSLDGLNTHCFIADELHSWKDRNLWGVMETSTGAR 190

Query: 190 THGMAVFNDEAS----GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL 245
              MA     A     G    +    +                       +  D  +   
Sbjct: 191 EQPMAFSISTAGWILDGIGKELFDDGVTILENYGLEENVFTM-------NYTLDDGDKFN 243

Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV---ARIEILGQFPQQEVNNFIPHNYI 302
           +     + +      +     E +  +    S        + L  +       ++  + +
Sbjct: 244 DRNCWIKANPCLGVSVKEEDIERLCRKAERMSSERANFLTKRLNVWVNNAE-AWLNLDKL 302

Query: 303 EEAMSREAIDD--LYAPLIMGCDIAGEGGDKTVVVFRRGN 340
            +     A  +       I+G D A      +V      N
Sbjct: 303 YQCADENARLEDFEGRDCIIGVDFADYLDLTSVCYLFVNN 342


>gi|256374744|ref|YP_003098404.1| type III restriction protein res subunit [Actinosynnema mirum DSM
           43827]
 gi|255919047|gb|ACU34558.1| type III restriction protein res subunit [Actinosynnema mirum DSM
           43827]
          Length = 525

 Score = 51.1 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 66/241 (27%), Gaps = 21/241 (8%)

Query: 1   MPRLISTDQKLEQ----ELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQL 56
           + + +  D    +     ++++    E       F+           PL           
Sbjct: 64  LAKRLDADTSGPKNVLNAVNDLTWTIEQRRELLEFLGFTIDRAPTRTPLFRQD------A 117

Query: 57  EFMEAVDVHCHSNVNNSNPTIF----KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
           E +  +  H           I+    +  +    G+GKT     ++   +  R    ++ 
Sbjct: 118 EPLYGLFPHQRRAAARIKELIYDGPRRAVLHLPTGVGKTRTGMNLICDHLRDREPTLVVW 177

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           +A+   +L     AE     S L +R    +  + +  +            +        
Sbjct: 178 LAH-GQELLEQAAAEFEHAWSQLGNRP---VSVVRMWGNAPTTLDDVADGVVILGLEK-- 231

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232
             + ++  P+      +        DEA        + ++   T         +T+   R
Sbjct: 232 AVSAAKGSPEFLHTLASRS-SLTVFDEAHQIIAPTFQRVVDALTIRPDASLLGLTATPGR 290

Query: 233 L 233
            
Sbjct: 291 T 291


>gi|227496997|ref|ZP_03927248.1| phage Terminase [Actinomyces urogenitalis DSM 15434]
 gi|226833491|gb|EEH65874.1| phage Terminase [Actinomyces urogenitalis DSM 15434]
          Length = 480

 Score = 50.7 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/296 (9%), Positives = 65/296 (21%), Gaps = 43/296 (14%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             WQ   ++         +   +    +  +S  R  GK  +     ++ ++       +
Sbjct: 45  DDWQAMVLDDWLATGPDGLWAHS----RAGLSVPRQNGKNAILEAREVYGMTMLHEA-FL 99

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A+     +      +  +                       A + E       +   +
Sbjct: 100 HTAHEVKTARKAFLRLLGYF-------------DNPRKYPDLAAMVKEIRRTNGQEAIVL 146

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF-FTELNPNRFWIMTSNT 230
           T     E    +           +  DEA    D   +++          N   I T   
Sbjct: 147 TGGGQIEFVARSKNSARGFTVDIIVLDEAQDLTDEALEALRSTNAAGPQANPQIIYTGTP 206

Query: 231 RRLNGW--------------------FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGII 270
                                     +++    P  D        +             +
Sbjct: 207 PSPKNDGEVFTRFRSGALSGTTASTCWHEWSAAPDADLDDETTIAQANPAYQIRLSAKTV 266

Query: 271 SRYGLD--SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI 324
           +    D   +    E LG + +   +  I            +  +    L +  D+
Sbjct: 267 ADEREDISEEGFARERLGMWDEVSTSAVIDQATWLRCADMASQVN--DRLALAVDV 320


>gi|289423849|ref|ZP_06425642.1| putative phage terminase, large subunit [Peptostreptococcus
           anaerobius 653-L]
 gi|289155626|gb|EFD04298.1| putative phage terminase, large subunit [Peptostreptococcus
           anaerobius 653-L]
          Length = 593

 Score = 50.7 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 79/288 (27%), Gaps = 42/288 (14%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGM--SIICIANSETQLKNTLWAEVSKWLS-MLPHR 138
           I   R  GK+ L         + R      I C A  + Q  N +W E++K++       
Sbjct: 110 IQIARQNGKSFLAGVEGNAWATFRGYKLGKIYCAATKQDQA-NIVWDELAKFIRSDKWLD 168

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV--- 195
             ++++        +      +++G D+K         S             + + +   
Sbjct: 169 KMYKIREHDRIIKSYVTGTEIKAIGRDTKSADGFRSVLSIVDEYHAHPNSKMYQLLLDGQ 228

Query: 196 ---------FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246
                        A         +I G   +       I+     + + + Y       +
Sbjct: 229 INVKSALTLIITTAGF-------TIGGACHKKYLLCKKILEGIVTKDSQFIYICEMDKDD 281

Query: 247 D-WKRYQIDTRTVE----GIDSGFHEGIISRYGLDSDVAR------------IEILGQFP 289
           D W       +T        D    E +I +    S  A+             E+     
Sbjct: 282 DIWDPVNW-AKTSPLRLWNEDDTLDEEMIDKIREKSITAKETGGNELVNFLTKELNCWVT 340

Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFR 337
                       ++    R   D      I+G D++  GGD T +   
Sbjct: 341 NAGDQLLDNKKLLKCRSKRTLGDFKGRECILGIDLS-SGGDLTSIALI 387


>gi|120602517|ref|YP_966917.1| hypothetical protein Dvul_1472 [Desulfovibrio vulgaris DP4]
 gi|120562746|gb|ABM28490.1| protein of unknown function DUF264 [Desulfovibrio vulgaris DP4]
          Length = 599

 Score = 50.7 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/341 (11%), Positives = 76/341 (22%), Gaps = 67/341 (19%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P  +Q +       +    +  +     +  + A R IG T   A              I
Sbjct: 148 PALFQEKLHARYFDY-QRQLRAALTHRNRMLLKA-RQIGATWYFAQEAFENACLTGDNQI 205

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
              A            +V +   M      F++             ++  +    ++ + 
Sbjct: 206 FLSATKAQS-------QVFRNYIMQIAGEAFDIT-------LSGNPMVLHTAHGKAELHF 251

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTS 228
           ++  + S          H      V+ DE         + K   G        R    T 
Sbjct: 252 LSNSSRSA------QSYHGH----VYIDEFFWITKFKELFKVATGMAAHKRWRRTLFSTP 301

Query: 229 N-------TRRLNGWFYDIFNIPLEDWKRYQI---------------DTRTVEGIDSGFH 266
           +              F   F+ P        +                    E       
Sbjct: 302 SAITHEAYPLWSGETFQRRFSKPRPWPDTEAMRAGVLCPDTYFRNIITLADAEAGGCDLF 361

Query: 267 EGIISRYGLDSDVARIEILGQFPQQEVNNF---------IPHNYIEEAMSREAIDDLYAP 317
           +    +     +  R     +F       F         +     ++    +       P
Sbjct: 362 DVAQLKLEYTPEEFRQLFGCEFIDDTQGVFRLAQLEACMVDPADWQDVRQGDPHPVGNLP 421

Query: 318 LIMGCDIAGEGGDKTVVVF-----RRGNIIEHI--FDWSAK 351
           +  G D A  G D +         R G  I  I    W  +
Sbjct: 422 VWGGYDPARSGDDAS-FAVLLPDLRDGGGIRCIERHKWKGR 461


>gi|322374796|ref|ZP_08049310.1| putative helicase [Streptococcus sp. C300]
 gi|321280296|gb|EFX57335.1| putative helicase [Streptococcus sp. C300]
          Length = 881

 Score = 50.7 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 59/196 (30%), Gaps = 30/196 (15%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            ++Q + ++    +      +         ++A  G GKTT+        +  R G   +
Sbjct: 15  RQYQKQVLDRFQDYQADGHVH--------LVAAP-GSGKTTIG-----IELIARFGNPAL 60

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +  +          E  +W+  +      + Q LS   S    E+   ++      ++ 
Sbjct: 61  ILVPT------VTIRE--QWVDRIQTAFLEDCQRLSDLVSQNLKEMKVLTIVTYQAFHSA 112

Query: 172 TCRTYSEERPDTFVG--------PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
             +  S+E  +                    +  DE     +   KS+  F  +  P + 
Sbjct: 113 MNQLQSQEDGEAEDFVGFDLLASLRAQKVATLCLDECHHLRNEWWKSLEAFRKQYGPLKL 172

Query: 224 WIMTSNTRRLNGWFYD 239
             +T+     +     
Sbjct: 173 ISLTATPPYDSDPELW 188


>gi|221148414|gb|ACL99813.1| BDRF1 [Human herpesvirus 4]
          Length = 690

 Score = 50.7 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 54/189 (28%), Gaps = 15/189 (7%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GKT +   ++  ++S    + I  +A+ +      ++ E+   L+        E+ 
Sbjct: 227 PRRHGKTWIVVAIISLILSNLSNVQIGYVAHQKHVAS-AVFTEIIDTLTKSFDSKRVEVN 285

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                           S  I S     TC                     +F DEA+   
Sbjct: 286 ------KETSTITFRHSGKISSTVMCATCF--------NKNSIRGQTFHLLFVDEANFIK 331

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264
                +ILGF  + +    +I + N+      F        E               D  
Sbjct: 332 KEALPAILGFMLQKDAKIIFISSVNSADQATSFLYKLKDAQERLLNVVSYVCQEHRQDFD 391

Query: 265 FHEGIISRY 273
             + ++S  
Sbjct: 392 MQDSMVSCP 400


>gi|123845631|sp|Q3KSR3|TRM3_EBVG RecName: Full=Tripartite terminase subunit UL15 homolog; AltName:
           Full=DNA-packaging protein BGRF1/BDRF1; AltName:
           Full=Terminase large subunit
 gi|64173286|gb|AAY41136.1| probable DNA packaging protein [Human herpesvirus 4]
          Length = 690

 Score = 50.7 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 54/189 (28%), Gaps = 15/189 (7%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GKT +   ++  ++S    + I  +A+ +      ++ E+   L+        E+ 
Sbjct: 227 PRRHGKTWIVVAIISLILSNLSNVQIGYVAHQKHVAS-AVFTEIIDTLTKSFDSKRVEVN 285

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                           S  I S     TC                     +F DEA+   
Sbjct: 286 ------KETSTITFRHSGKISSTVMCATCF--------NKNSIRGQTFHLLFVDEANFIK 331

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264
                +ILGF  + +    +I + N+      F        E               D  
Sbjct: 332 KEALPAILGFMLQKDAKIIFISSVNSADQATSFLYKLKDAQERLLNVVSYVCQEHRQDFD 391

Query: 265 FHEGIISRY 273
             + ++S  
Sbjct: 392 MQDSMVSCP 400


>gi|82503246|ref|YP_401690.1| BGRF1/BDRF1 [Human herpesvirus 4]
 gi|139424519|ref|YP_001129485.1| BGRF1/BDRF1 [Human herpesvirus 4 type 2]
 gi|267408|sp|P03219|TRM3_EBVB9 RecName: Full=Tripartite terminase subunit UL15 homolog; AltName:
           Full=DNA-packaging protein BGRF1/BDRF1; AltName:
           Full=Terminase large subunit
 gi|254784086|sp|P0C744|TRM3_EBVA8 RecName: Full=Tripartite terminase subunit UL15 homolog; AltName:
           Full=DNA-packaging protein BGRF1/BDRF1; AltName:
           Full=Terminase large subunit
 gi|1632798|emb|CAA24834.1| probable DNA packaging protein [Human herpesvirus 4]
 gi|23893636|emb|CAD53440.1| BGRF1-BDRF1 protein [Human herpesvirus 4]
 gi|82703995|gb|ABB89264.1| BGRF1/BDRF1 [Human herpesvirus 4]
          Length = 690

 Score = 50.7 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 54/189 (28%), Gaps = 15/189 (7%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GKT +   ++  ++S    + I  +A+ +      ++ E+   L+        E+ 
Sbjct: 227 PRRHGKTWIVVAIISLILSNLSNVQIGYVAHQKHVAS-AVFTEIIDTLTKSFDSKRVEVN 285

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                           S  I S     TC                     +F DEA+   
Sbjct: 286 ------KETSTITFRHSGKISSTVMCATCF--------NKNSIRGQTFHLLFVDEANFIK 331

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264
                +ILGF  + +    +I + N+      F        E               D  
Sbjct: 332 KEALPAILGFMLQKDAKIIFISSVNSADQATSFLYKLKDAQERLLNVVSYVCQEHRQDFD 391

Query: 265 FHEGIISRY 273
             + ++S  
Sbjct: 392 MQDSMVSCP 400


>gi|262047916|ref|ZP_06020862.1| terminase large subunit [Lactobacillus crispatus MV-3A-US]
 gi|260571794|gb|EEX28369.1| terminase large subunit [Lactobacillus crispatus MV-3A-US]
          Length = 644

 Score = 50.7 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 51/358 (14%), Positives = 97/358 (27%), Gaps = 46/358 (12%)

Query: 34  RFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93
             F   I    L        WQ   +  ++    +N            IS GRG GKT +
Sbjct: 93  FKFASIIPDVDLHKPLPLMDWQKFILAMINGWKDANGERRYTD---IHISVGRGQGKTQI 149

Query: 94  NAW----MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF-------- 141
                   +L           +  AN+  Q    L+  V K L  +     F        
Sbjct: 150 AGIQMCKAVLIDTLNFTNKDFLITANTSDQ-STKLFGYVKKMLEAVIKIEPFASIAKESG 208

Query: 142 -EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
            ++Q+  +       ++ + S   D    T       +E          T      + +A
Sbjct: 209 LDLQTNQIIEKETNNKVWKISYEADKYDSTHNVLAIYDETGALDTYDRMTDIT---DGQA 265

Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSN--------TRRLNGWFYDIFNIPLEDWKRYQ 252
              P      I   + +          +         +R  +     ++     D     
Sbjct: 266 QVIPYHQFIKISSAYPDPTSPFHQEQITMQHIMEKDYSREGDNSLCLVWAQDDLDETFKP 325

Query: 253 IDTRTVEGIDSGFHEGIISR-----YGLDSDV-------ARIEILGQFPQQEVNNFIPHN 300
                   +     E    R        D  +        + + L  + +Q   +++   
Sbjct: 326 ETWEKSNPLIGLSDEERKRRTDNLIKQRDQGMLTNTLHKFQNKNLNLWLKQSTASYLNLK 385

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF-RRGNIIEHIFDWSAKLIQETN 357
            +E+A++ +   D      MG D +    D T V F       E +  W    + + +
Sbjct: 386 DVEKAINDDFKID-GLICYMGFDYSMF-SDNTAVGFAFPYTTPEGMHKWQ---MMQHS 438


>gi|157377633|ref|YP_001476233.1| type III restriction enzyme, res subunit [Shewanella sediminis
           HAW-EB3]
 gi|157320007|gb|ABV39105.1| type III restriction enzyme, res subunit [Shewanella sediminis
           HAW-EB3]
          Length = 1052

 Score = 50.7 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 63/185 (34%), Gaps = 28/185 (15%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           PH+ Q+E ++ +      +   +     +  I A  G GKT ++A+         P   I
Sbjct: 319 PHQHQIEILDRL------DAERNIHDRNRNLIVAATGTGKTLISAFDFKRFYQNNPTAKI 372

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + IA+ E  LK  +  E  + +   P+                + EL       DS +  
Sbjct: 373 LFIAHREEILKQAI--ESYRAVLKQPN----------------FGELWVGQHKPDS-YNQ 413

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
           +     S       +  ++ +   +  DE         +  +  F+   P     +T+  
Sbjct: 414 LFASIQSFNNQIDNINLNSDYYDFIVIDEVHHVSADSYRKFINHFS---PTILLGLTATP 470

Query: 231 RRLNG 235
            R +G
Sbjct: 471 ERHDG 475


>gi|330940119|gb|EGH43292.1| putative phage terminase large subunit [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 495

 Score = 50.7 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/333 (13%), Positives = 84/333 (25%), Gaps = 77/333 (23%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  I   R +G TTL   + L   +         IA++    K     ++      LP  
Sbjct: 48  RNIILKARQLGFTTLVCIVQL-DAALFESAKCALIAHTLNDAKRLFREKIKYAYDNLPK- 105

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                    +  +   +      +            ++      T    H          
Sbjct: 106 --------EIRAANPASNDAAGELVFSKGGSLYVSTSFRG---GTLRYLH--------VS 146

Query: 199 EASGT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-------- 246
           E        P    + + G F  +  + F  + S      G+F+D      +        
Sbjct: 147 EFGKICAKFPHKAREIVTGAFEAVAADCFVTIESTAEGRAGYFFDYSQSAEKQQMSGVPL 206

Query: 247 ---DWKRYQIDTRTVE-------------GIDSGFHEGIISRYGLDSDVARI------EI 284
              DWK +                      + + F+E         +   R       + 
Sbjct: 207 GKLDWKFFFFSWWRNPLYWLDPTDVIIPDRLTNYFNELQAKHGIATNPGQRAWYSAKEKT 266

Query: 285 LGQ-------------FPQQEVNNFIPHNY--IEEAMSREAIDD-LYAPLIMGCDIAGEG 328
           LG              F Q     +    +  +  A     + D  + P+    DI    
Sbjct: 267 LGDDMKREYPSIPAEAFQQSVEGAYYAKQFAKLYGAQRIGVLPDNSHQPVHTFWDIGV-- 324

Query: 329 GDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC 361
           GD T + F R        ++      + + EG 
Sbjct: 325 GDSTSIWFVR----MVGEEYHVIDFYQNSGEGL 353


>gi|228960169|ref|ZP_04121827.1| Prophage LambdaBa02, terminase, large subunit [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228799519|gb|EEM46478.1| Prophage LambdaBa02, terminase, large subunit [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 524

 Score = 50.7 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/307 (10%), Positives = 78/307 (25%), Gaps = 34/307 (11%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
             WQ   + ++    H +            I  GR  GKTT+ + +  + ++    PG  
Sbjct: 42  QPWQHFVIGSLYGWIHKDTGYRRFREGLIFI--GRKNGKTTMISGLSNYAVAKDNEPGAR 99

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK-- 167
           +  +AN++ Q    L+ E    +   P       ++            +E       K  
Sbjct: 100 VYVLANTKQQAGE-LFDESRAMVQKSPFLRKHLRENQKGIFHDKTHSKIEPRASDSKKLD 158

Query: 168 ---------HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--------KS 210
                          + +                M V+   A    +             
Sbjct: 159 GLNTHLGIFDEIHEFKNFKLINVIKKSRGARKQPMIVYITTAGYQLEGPLVQYYEIATDV 218

Query: 211 ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGII 270
           + G   +     F     +   +      I   P          +  +  +   ++    
Sbjct: 219 LEGVIDQDRKFYFMAEMDSVDEIENPELWIKANPN------MGVSLDLPSLIDDWNTDKH 272

Query: 271 SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLIMGCDIAGEGG 329
           +    +  + +      F   +  +F+    ++      +         + G D++    
Sbjct: 273 TDAEKNDWITKQF--NIFVDNDEMSFVGIEILKRNEEVIDIKGLAGKECVAGYDLSAT-E 329

Query: 330 DKTVVVF 336
           D T    
Sbjct: 330 DFTSACL 336


>gi|300811800|ref|ZP_07092271.1| helicase C-terminal domain protein [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300497216|gb|EFK32267.1| helicase C-terminal domain protein [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 1046

 Score = 50.7 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 61/192 (31%), Gaps = 28/192 (14%)

Query: 45  LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
           LE   +P+ +Q E ++ +               +K  + A  G+GKT + A+     ++ 
Sbjct: 316 LETSIRPYNYQQEILDRLQA------EREVYGHYKNLLVAATGVGKTVIAAFDFKRYLAE 369

Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
            P   ++ +A+ +  L+ +L     + L+     H    Q  +   S  +          
Sbjct: 370 HPHARLLFVAHRQEILEQSLQK-FREVLNDFNFGHLLVGQYKTDDVSQLFV--------- 419

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
                       S           + +   +  DE         + +    +   P    
Sbjct: 420 ---------SIQSFNSEKMADLLPSDYYDFIIIDEFHHAAAKSYQKL---LSHFKPKILL 467

Query: 225 IMTSNTRRLNGW 236
            +T+   R++G 
Sbjct: 468 GLTATPDRMDGQ 479


>gi|260577761|ref|ZP_05845696.1| hypothetical protein HMPREF0297_0275 [Corynebacterium jeikeium ATCC
           43734]
 gi|258604156|gb|EEW17398.1| hypothetical protein HMPREF0297_0275 [Corynebacterium jeikeium ATCC
           43734]
          Length = 517

 Score = 50.7 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 63/229 (27%), Gaps = 27/229 (11%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ E +           +       +  +S  R  GK  +   + L  I       I+ 
Sbjct: 42  PWQEELLRD----SLLQTDEGMWASREVVVSLARQNGKGEVLVALELVAIYLCGAERIMH 97

Query: 113 IAN---SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
            A+   +    ++ LW  +    +++    W+E +   + P        + ++   +K  
Sbjct: 98  SAHFLDTAMDARDRLWDVIEANPALM---EWWEDEHPGVSPRPVMGNG-KDAIKFPNKAK 153

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                     R  T           +  DE    P+ +  ++    T+  PN   +  S+
Sbjct: 154 IY-------YRTRTKKTGRGLSFDWLIFDECFDLPNEVYAAMNNT-TKARPNAQKVFISS 205

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278
                  F+                    +G D    +        D  
Sbjct: 206 PVNTREHFHGAIFSAKR--------WAASDGSDGMLFKEWCREPDDDPF 246


>gi|298376478|ref|ZP_06986433.1| terminase large subunit [Bacteroides sp. 3_1_19]
 gi|298266356|gb|EFI08014.1| terminase large subunit [Bacteroides sp. 3_1_19]
          Length = 481

 Score = 50.7 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/298 (12%), Positives = 83/298 (27%), Gaps = 48/298 (16%)

Query: 58  FMEAVDVHCHSNVNNS-NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII--CIA 114
           F++ V         +  +  I + A+S     GK+ +++  + W++   P  S++  C +
Sbjct: 46  FLKKVADAFTRVYESYVSGVIRRLAVSMPPRAGKSYISSLFISWMLGHFPEESVMRNCCS 105

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
           ++   L N L  +    +     +  F                L               R
Sbjct: 106 DT---LYNKLSYDTRDIVRSSRFKEIF------------PDIQLRGDKQNVHGWSLEAAR 150

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW---------- 224
             S                 +         D + KS+    ++ N  + W          
Sbjct: 151 QVSYFGAGVGGTVIGFGASML------AMTDDLYKSLEDALSDTNNEKVWSWKQGTHDSR 204

Query: 225 -------IMTSNTRRLNGWFYDIFNIPL-EDWKRYQI----DTRTVEGIDSGFHEGIISR 272
                  I              +  +   ++  R       D    E + +  +   +  
Sbjct: 205 IEGNCCSIDIGTRWSATDVLGRMEEMGKYDEIIRIAALDENDCSFCEDVHTTEYYHELRE 264

Query: 273 YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGD 330
              DS +   E + + P + +    P + +      +        +I   D+A EG D
Sbjct: 265 ETDDS-IWCAEYMQE-PIEAIGLLFPKSELNRFKLADIEGKQPDGVIGATDVADEGDD 320


>gi|27452870|gb|AAO12374.1| cleavage/packaging protein [Porcine lymphotropic herpesvirus 2]
          Length = 683

 Score = 50.7 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 55/170 (32%), Gaps = 16/170 (9%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAI-SAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
           +  +                  K ++    R  GKT +   ++  L+++   + I  +A+
Sbjct: 190 DIFKVYFDLSDMIPERMEVFKQKASVFLIPRRHGKTWIVVAIISILLTSIEDLHIGYVAH 249

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
            +  + NT++ E+   L+      + E++            L +      S     TC  
Sbjct: 250 QKH-VSNTVFTEIINTLNRFFPSKYIEVK------KDNGTILFKADGKKPSTLMCATCF- 301

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225
                              ++ DEA+        +ILGF  + +    +I
Sbjct: 302 -------NKNSIRGQTFNLLYIDEANFIKKDALPTILGFMLQKDAKLIFI 344


>gi|170732639|ref|YP_001764586.1| terminase [Burkholderia cenocepacia MC0-3]
 gi|169815881|gb|ACA90464.1| Terminase [Burkholderia cenocepacia MC0-3]
          Length = 521

 Score = 50.7 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 46/347 (13%), Positives = 86/347 (24%), Gaps = 66/347 (19%)

Query: 16  HEMLMHAECVLS----FKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVN 71
            + L   E        F   V+        G PL+       WQ E    +         
Sbjct: 9   ADGLWFDEAAADRAVRFFETVLTHTKGEWAGTPLKLSD----WQAE---NIIRPLFGWKR 61

Query: 72  NSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEV 128
                 ++ A I   R  GK+TL+A + L+L+     PG  I   A    Q    ++   
Sbjct: 62  ADGTRRYRTAYIQIPRKAGKSTLSAGIALYLLYADGEPGAEIYSAAADRDQAS-IVFEMA 120

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
              +   P                  A   +                            H
Sbjct: 121 KGMIDAAPALRKRAQTFKRAVVVSSSASSYKV-------------------LSADAYTKH 161

Query: 189 NTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI---- 243
             +   +  DE    P+  +   +              +T+     +   Y++++     
Sbjct: 162 GLNAHGIIFDELHAQPNRDLWDVLTTSTGARRQPLTVAITTAGYDRHSICYELYDYACKV 221

Query: 244 ------------------PLEDWKRYQIDTRTVEGIDSGFHEGIISRY-------GLDSD 278
                               +DWK      +   G+     E    +            +
Sbjct: 222 RDGIIDDPSFLPCIYEAGADDDWKSPATWRKAHPGLGVSVKEEYFEQEAAKAAAIPAYEN 281

Query: 279 VARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
             R  +L Q+ +Q    +I  +  +           +     G D+A
Sbjct: 282 TFRQLLLNQWTEQA-CRWISMDTWDSCAGELPDLTDHV-CYAGLDLA 326


>gi|294851955|ref|ZP_06792628.1| conserved hypothetical protein [Brucella sp. NVSL 07-0026]
 gi|294820544|gb|EFG37543.1| conserved hypothetical protein [Brucella sp. NVSL 07-0026]
          Length = 264

 Score = 50.7 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 49/214 (22%), Gaps = 31/214 (14%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTI--FKCA-ISAGRGIGKTTLNAWMMLWLISTRPG----- 107
            + + A D       +   P    ++   I  GRG GKT   A  +  +    P      
Sbjct: 6   RQILAAQDEWLIRARDAQLPPDGDWRVWLIMGGRGSGKTRAGAEWVSGMALGLPPFAGKP 65

Query: 108 -MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
              I  +  +    +  +    S  LS+         ++                     
Sbjct: 66  SGHIALVGETFNDAREVMVDGPSGILSVSRL-VRPRYEASRRRL---------------- 108

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFW 224
                     +    +           A + DE +    P      +       +  R  
Sbjct: 109 --IWDNGAVATLFSSEDPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPR-Q 165

Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
           ++T+  R               D   +    R  
Sbjct: 166 VVTTTPRGAASQGAFDGQDCFHDAYAHSGKCRQS 199


>gi|269203619|ref|YP_003282888.1| putative phage terminase, large subunit [Staphylococcus aureus
           subsp. aureus ED98]
 gi|262075909|gb|ACY11882.1| putative phage terminase, large subunit [Staphylococcus aureus
           subsp. aureus ED98]
          Length = 563

 Score = 50.7 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 49/349 (14%), Positives = 90/349 (25%), Gaps = 62/349 (17%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTR--PGM 108
             WQ   + ++    H          F+ A I  GR  GKTT  + +  + +S     G 
Sbjct: 81  QPWQHFIIGSLFGWVHKETKLR---RFREALIFMGRKNGKTTTISGVANYGVSQDGENGA 137

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            I  +AN   Q +  L+ E    +   P                     L   +  D   
Sbjct: 138 EIHLLANVMKQAR-ILFDESKAMIKASPILSR-------------EFRPLRDEIHYDKTI 183

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMT 227
             I  +    ++ D               DE     D  +   I              +T
Sbjct: 184 SKIMPQASDSDKLDGLNTHMG------IFDEIHEFKDYKLISVIKNSRAARLQPLLIYIT 237

Query: 228 SNTRRLNGWFYDIFNIPLE--------------------------DWKRYQIDTRTVEGI 261
           +   +L+G   D+  +  +                               + +      I
Sbjct: 238 TAGYQLDGPLVDMVEMGRDILDGVIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSI 297

Query: 262 DSGFHEGIISRYGLDSDV---ARIEILGQFPQQEVNNFIPHNYIEEAMSR-EAIDDLYAP 317
           D    +    +             +    F   +  +FI +  +++        +    P
Sbjct: 298 DLEEMKEEWKKAKRTPAERGDFITKRFNIFANNDEMSFIDYPTLQKNNETVSLEELEGRP 357

Query: 318 LIMGCDIAGEGGDKTV----VVFRRGNIIEHIFDWSAKLIQETNQEGCP 362
             +G D++    D T          G +      W  K   E + E  P
Sbjct: 358 CTIGYDLSET-EDFTAACATFALDNGKVAVLSHSWIPKHKVEYSNEKIP 405


>gi|20453820|gb|AAM22132.1|AF478169_25 cleavage/packaging protein [porcine lymphotropic herpesvirus 1]
          Length = 683

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 55/170 (32%), Gaps = 16/170 (9%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAI-SAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
           +  +                  K ++    R  GKT +   ++  L+++   + I  +A+
Sbjct: 190 DIFKVYFDLSDMIPERMEVFKQKASVFLIPRRHGKTWIVVAIISILLTSIEDLHIGYVAH 249

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
            +  + NT++ E+   L+      + E++            L +      S     TC  
Sbjct: 250 QKH-VSNTVFTEIINTLNRFFPSKYIEIK------KDNGTILFKADGKKPSTLMCATCF- 301

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225
                              ++ DEA+        +ILGF  + +    +I
Sbjct: 302 -------NKNSIRGQTFNLLYIDEANFIKKDALPTILGFMLQKDAKLIFI 344


>gi|72384751|gb|AAZ67667.1| phage D3 terminase-like protein [Haemophilus parasuis 29755]
          Length = 556

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/313 (11%), Positives = 69/313 (22%), Gaps = 52/313 (16%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ+     +    + +            ++  R   K+T+ A +  W +    G   I 
Sbjct: 71  DWQIFLFANLLGFKYRDSGLRKYRSAYVQVA--RKNAKSTIGAILANWFLVMEKGQQDIY 128

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            A         ++                     +   +     L ++      K     
Sbjct: 129 TAAVSRDQARIVF-------------------DDAKKMAMLSKPLSKRLTIQQHKMLYPQ 169

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT----S 228
             +              T+      DE    PD    S L       P           S
Sbjct: 170 KNSLMRPLASKSSTIEGTNPSLAIVDEYHLHPDNSVYSALELGQGARPEGLLFAITTAGS 229

Query: 229 NTRRLNGWFYDIF-----------------------NIPLEDWKRYQIDTRTVEGIDSGF 265
           NT       YD                         +   +  +  + +    + I    
Sbjct: 230 NTISACKQHYDYCCQILDGTEKNESIFILIYELDDESEVDDPTQWIKANPNIGKSIPYKD 289

Query: 266 HEGIISRYGLDSDVARIEILGQF---PQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGC 322
            E  I++           +  +F              N+     + E          MG 
Sbjct: 290 FENTITKARGIPSEWVEMLTKRFNVWCNGSTPWLGEGNWKACGRNYEEERLHGKACYMGL 349

Query: 323 DIAGEGGDKTVVV 335
           D++    D T + 
Sbjct: 350 DLSST-NDITSLC 361


>gi|157325367|ref|YP_001468786.1| TerL [Listeria phage P35]
 gi|66733372|gb|AAY53187.1| TerL [Listeria phage P35]
          Length = 440

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/279 (12%), Positives = 73/279 (26%), Gaps = 22/279 (7%)

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           + +   H        N       +  GRG GK++  A M++  I   P  + +     + 
Sbjct: 25  LMSPAFHNIYQRVLDNTAPSHVWMKGGRGSGKSSFVALMVVDEIMKDPQANAVIFRKVDE 84

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
            ++ TL  +    +  L     +      +       E   +                S+
Sbjct: 85  GMRTTLLPQYQWAIDQLGVSGAWRTSLQPMMLLYKNPETGLEQQIRFKGVKDPKRVKASK 144

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
            R                ++E     +       G     +         N  +  G + 
Sbjct: 145 FRVGYAKYLIYEEADEYESEEDFSIVNSSYMRGEGT---GDSRA--FYLYNPPKYKGHWL 199

Query: 239 DIFNIPLEDWKRYQIDTRT--------VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290
           + +   + D     +   T         E + S + E        + +    E LG+   
Sbjct: 200 NNWVDVIRDEPSQYVHHSTFIPIALHHPEWLGSTWLESARLVRDKNPNRYEWEFLGRNVN 259

Query: 291 QEVNNF-------IPHNYIEEAMSREAIDDLY--APLIM 320
                F       I  + I+     E  D+ Y   P + 
Sbjct: 260 TGNEVFPNAVQEHITFDMIDGLRPYEGFDEGYTADPSVW 298


>gi|152978902|ref|YP_001344531.1| phage terminase [Actinobacillus succinogenes 130Z]
 gi|150840625|gb|ABR74596.1| phage Terminase [Actinobacillus succinogenes 130Z]
          Length = 567

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/321 (11%), Positives = 86/321 (26%), Gaps = 59/321 (18%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFK-CAISAGRGIGKTTLNAWMMLWLISTR--PGM 108
             WQ   + AV         ++    ++       R  GK+ ++A + L++       G 
Sbjct: 80  EPWQ---LFAVANAFGWLKKSNGLRRYREVYTEIPRKNGKSAISAGVGLYMFCIDGEFGA 136

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            +   A +E Q                        +   L  + +  E+   ++   +  
Sbjct: 137 EVYSGATTEKQAWEVFRP------------ARLMCKKTELLCTTFGVEVNASNLNRPADG 184

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPNRFWIMT 227
                   S   P                DE      D +  ++L           WI+T
Sbjct: 185 --------SRFEPLIGNPGDGASPSCAIVDEYHEHKDDELYTTMLTGMGARRQPLMWIIT 236

Query: 228 SNTRRLNGWFYDIFN----------------------IPLEDWKRYQIDTRTVEGIDSGF 265
           +    + G  YD                            +DW    +  +     D   
Sbjct: 237 TAGYNIEGPCYDKRREVIEMLNGAVPNDELFGLIYTIDEGDDWTSSDVLRKANPNFDVSV 296

Query: 266 HEGIISRYGLDS-------DVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD--LYA 316
           +   +      +       +  + + L  +   + + F   ++ E+        +     
Sbjct: 297 YGDYLLSQQKQAINNPRFANKFKTKHLNVWVSAKESYFNMVSW-EKCYDETLSLEDFQGE 355

Query: 317 PLIMGCDIAGEGGDKTVVVFR 337
            +++G D+A +    ++V   
Sbjct: 356 EVVLGLDMARKLDMNSLVRVF 376


>gi|253583089|ref|ZP_04860297.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251834981|gb|EES63534.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 492

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 81/293 (27%), Gaps = 32/293 (10%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK--TTLNAWMMLWLISTRPGM 108
           P  +Q++ M+A             P + + A+SA RG+GK  T L    M+   + + G 
Sbjct: 10  PRNFQIKVMKA-----------FLPEMSRVAVSASRGMGKDITGLACADMI--CNLKKGA 56

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
           ++  +  S   LK  L+    K    +          +S     +  + +  +    +  
Sbjct: 57  NVGYLGTSLKALKKILFVNDDKTGRPMFQTVINTESLVSTRTGEYLHKDMS-NFQYKNGS 115

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
             +   T              T   A+   E++       K + G     N     I T 
Sbjct: 116 KILLLGTDQ-------NNELGTSLDALIVTESARFSRDKWKFLRGNVDRANGRILEISTP 168

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTR-----TVEGIDSGFHEGIISRYGLDSDVARIE 283
                     D      + +    +            +        +     D      E
Sbjct: 169 FFASEFNELLDGNLEVSKTYTMILVPATEGFNADGTRVYDDAKLEWLKTQY-DEATFLQE 227

Query: 284 ILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIM-GCDIAGEGGDKTVVV 335
            +        +  + H+  +        +  Y   +    D+     D TV+ 
Sbjct: 228 YMVSTKAMNNDAVLGHSLKKAKRLDVFSNVGYDRELWFSFDLGQ--SDYTVMF 278


>gi|145514241|ref|XP_001443031.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124410392|emb|CAK75634.1| unnamed protein product [Paramecium tetraurelia]
          Length = 2116

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 54/188 (28%), Gaps = 18/188 (9%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               I A  G GKT +  + ML +    P   I+ IA  +   K  L      W   L + 
Sbjct: 1349 NILIGAPTGSGKTIMAEFAMLRVFKQSPQFKIVYIAPLKAIAKERL----LDWTKRLKNI 1404

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
            +   ++    +     A L    +    + +    R+++          +      +  D
Sbjct: 1405 NKNVLELTGDYTPDLQALLKAHVLITTPEKWDGISRSWN-------NREYVKQTCLLIFD 1457

Query: 199  EASGTPDIINKSILGFFT-------ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY 251
            E         + +    +       + N     I  S          + F +    +  +
Sbjct: 1458 EIHLLGQERGQVLEVIVSRMNSLSYDTNKKTRMIGLSTAMANGLDVSNWFGVKKGRFYNF 1517

Query: 252  QIDTRTVE 259
            +   R V 
Sbjct: 1518 KPSCRPVP 1525


>gi|207270776|ref|YP_002261418.1| gp2 [Listeria phage P40]
 gi|204307991|gb|ACI00362.1| gp2 [Listeria phage P40]
          Length = 430

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/303 (10%), Positives = 79/303 (26%), Gaps = 28/303 (9%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
               +     +             +  GRG  K++     ++  I   P  + +      
Sbjct: 17  AFYDLHDQIQAGTTPD-----NIWLEGGRGSTKSSFAFIEIIDGIMRDPLANAVVYRKVA 71

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
             L+NT + +    + +L     +++    L  +    E  ++   +       T    S
Sbjct: 72  DTLRNTTYEQCKWAMDILGVTPLWKLNVNPLRMTYPNPETGQEQRILFQGADKATNTKGS 131

Query: 178 EERPDTFVG-PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
                      +         DE         +   G     +         N  +  G 
Sbjct: 132 MFSYGVCKYLIYEEAEQFSNADEMETITVSWLRGDYG-----DIKPLVFYCYNPPKFRGH 186

Query: 237 FYDIF-----NIPLE--DWKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQF 288
           + +       + P +      +     +    +   F    ++   L+ +  R   LG+ 
Sbjct: 187 WLNKHVVSLRHSPNDLVHHSTFVAVANSHPEWLGEAFLRRALALKKLNPNRYRHVFLGED 246

Query: 289 PQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKT----VVVFRRGNIIEH 344
                  F    Y       +  +  +     G D  G   D +    V   R+ + +  
Sbjct: 247 VMTGNEVFPNLEY----RPIDPSEYHHLTPHEGFD-EGYTTDPSVWLQVYYDRKRDTLYI 301

Query: 345 IFD 347
           + +
Sbjct: 302 VKE 304


>gi|53802296|ref|YP_113003.1| ATP-dependent DNA helicase UvrD [Methylococcus capsulatus str. Bath]
 gi|53756057|gb|AAU90348.1| ATP-dependent DNA helicase, UvrD/REP family [Methylococcus capsulatus
            str. Bath]
          Length = 1469

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/275 (12%), Positives = 70/275 (25%), Gaps = 20/275 (7%)

Query: 25   VLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISA 84
             L    F+ ++ P   K   L   + P  W    +E++       +   +       + A
Sbjct: 816  RLDRDAFLRQWLPGREK--ELSRQTTPESW-RNIVESLQNPAQQRIVADDREQTNVLVLA 872

Query: 85   GRGIGKTTLNAWMMLWLISTRP--GMSIICIANSETQLKNT------LWAEVSKWLSMLP 136
            G G GKT +    + +LI  R      I+ +A +             L  + ++ +++L 
Sbjct: 873  GPGSGKTRVLVHRIAYLIRVRRENPRGILALAYNRHAAAEIRKRLAGLIGDDARGITVLT 932

Query: 137  HRHWFEMQSLSLHPSGWYAELLEQSMG-IDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
                    +       W     E     +      +       E  D            +
Sbjct: 933  CHALAMRLAGVSFAERWEKTGDEVFQEVLRQAIALLKGEGLPPEEADEQRDRLLAGYRWI 992

Query: 196  FNDEASGTPDIINKSILG----FFTELNPNRFWIMTSNTRRL----NGWFYDIFNIPLED 247
              DE         + I         + +     +   +  +     NG   +       D
Sbjct: 993  LVDEYQDIGPDQYELISALAGRTLQDEDSRLNLLAVGDDDQNIYAFNGASVEFIRRFEAD 1052

Query: 248  WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI 282
            +              S   E      G   D  + 
Sbjct: 1053 YAAKPAYLTENYRSTSRIIEAANRLIGDAPDRMKQ 1087


>gi|260880948|ref|ZP_05403222.2| conserved hypothetical protein [Mitsuokella multacida DSM 20544]
 gi|260850003|gb|EEX70010.1| conserved hypothetical protein [Mitsuokella multacida DSM 20544]
          Length = 546

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/368 (11%), Positives = 94/368 (25%), Gaps = 69/368 (18%)

Query: 22  AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81
                 F+ F   +          ++F+ P  W   F + +       + N      K  
Sbjct: 20  DRAAHDFQFFCEYYL--------ADYFTSP--WSEAFHKWLIHKYEDIIFNHKDEQNKVC 69

Query: 82  ISAGRGIGKTTLNA-WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP---- 136
           +S+ RG  K+TL++   +LW         I+ I+ +    K  +   +   +   P    
Sbjct: 70  VSSPRGHAKSTLSSFAFVLWCALYGYKKFIVIISATAIVAKQFILN-IRDAIEFNPLIKR 128

Query: 137 ----HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY--------SEERPDTF 184
                ++     S  L        + + +            R          S+E  D+ 
Sbjct: 129 DFGSLKNDSLWNSQELLLRTGAYIICKGANAQLRGLQFGGTRPDLALLDDMESQEEVDSP 188

Query: 185 VGPHNTH--------GMAVFNDEASGTPD--IINKSILGFFTEL---------------- 218
               +           M   + +A         N  +    TE                 
Sbjct: 189 TQVDSLEHWLTADVIPMLSVDGDAIFIGTVLSYNSVLWRLLTEARFASWERKRFQAVIEF 248

Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV-----EGIDSGFHEGIISRY 273
           +P+  W    +         + +      +  ++ +                +  ++ + 
Sbjct: 249 SPSNLWAEWESIMTDLSRGDNAYREAKNFYNEHKEEMLDGAKVLWPDQRKDQYLYLMEKR 308

Query: 274 GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY-APLIMGCDIA----GEG 328
               +    E     P  E        ++E        +      + +  D A       
Sbjct: 309 LESEESFASEYQND-PMTENLRVFKTEWLENNY---YEETPDIKEVNIALDPAVSTSRT- 363

Query: 329 GDKTVVVF 336
            D +V++ 
Sbjct: 364 ADYSVILV 371


>gi|289976633|gb|ADD21678.1| DNA maturase B [Caulobacter phage Cd1]
          Length = 602

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/260 (11%), Positives = 71/260 (27%), Gaps = 29/260 (11%)

Query: 38  WGIKGKPLEHFSQPHRWQLEFMEAVDVHC-------HSNVNNSNPTIFK-CAISAGRGIG 89
           W   G    H+   H    +F++    H          ++            + A RG  
Sbjct: 14  WEQVGLLQRHYESFH----DFLDDAFEHLGFSASWVQHDIGGFLAHGPNSLMVQAQRGQA 69

Query: 90  KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLH 149
           KTT+ A   +W +   P   ++ ++   TQ        + K L  +         + +  
Sbjct: 70  KTTITAAFAVWTLIHNPKARVLILSAGGTQANEIS-TLIVKLLLTMDELECLRPDASNGD 128

Query: 150 PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-------ASG 202
            +   A  +  ++    K  ++ C   +                 +  D+       A+ 
Sbjct: 129 RTSVEAFDIHYTLKGVDKSPSVACSGITG-------NLQGKRADLLIADDIESAKNSATA 181

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD--IFNIPLEDWKRYQIDTRTVEG 260
                  ++   FT +      I     + ++  +         +  W         +E 
Sbjct: 182 MMREFIMNLTRDFTSICTEGRIIYLGTPQSMDSIYNSLPGRGFAIRIWPGRYPTPEQLEN 241

Query: 261 IDSGFHEGIISRYGLDSDVA 280
                   I  R  ++  + 
Sbjct: 242 YGDMLAPAIRRRLAMNPALC 261


>gi|294848480|ref|ZP_06789226.1| phage terminase [Staphylococcus aureus A9754]
 gi|294824506|gb|EFG40929.1| phage terminase [Staphylococcus aureus A9754]
          Length = 566

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 54/378 (14%), Positives = 99/378 (26%), Gaps = 63/378 (16%)

Query: 22  AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81
            E       F+   F    KG   +   QP  WQ   + ++    H           +  
Sbjct: 57  EELAHRPIRFIE-KFCKPSKGSKRQLVLQP--WQHFIIGSLFGWVHK--ETKLRRFKEAL 111

Query: 82  ISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
           I  GR  GKTT  + +  + +S     G  I  +AN   Q +  L+ E    +   P   
Sbjct: 112 IFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKASP--- 167

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                           +L +    +  + +     +    +          +      DE
Sbjct: 168 ----------------KLDKNFRTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDE 211

Query: 200 ASGTPD-IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT- 257
                D  +   I              +T+   +L+G   D+     +   +   D RT 
Sbjct: 212 IHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVDMVEAGRDTLDQIIEDERTF 271

Query: 258 --------------------------VEGIDSGFHEGIISRYGLDSDV--ARIEILGQFP 289
                                     V        E         ++      +    F 
Sbjct: 272 YYLASLDDDDDINDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFA 331

Query: 290 QQEVNNFIPHNYIEEAMSR-EAIDDLYAPLIMGCDIAGEGGDKTV----VVFRRGNIIEH 344
             +  +FI +  +++        +    P  +G D++    D T          G +   
Sbjct: 332 NNDEMSFIDYPTLQKNNEIVSLEELEGRPCTIGYDLSET-EDFTAACATFALDNGKVAVL 390

Query: 345 IFDWSAKLIQETNQEGCP 362
              W  K   E + E  P
Sbjct: 391 SHSWIPKHKVEYSNEKIP 408


>gi|66395661|ref|YP_240002.1| ORF005 [Staphylococcus phage 47]
 gi|87162180|ref|YP_494101.1| phiSLT ORF 563-like protein, terminase, large subunit
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|156603994|ref|YP_001429940.1| putative terminase large subunit [Staphylococcus phage tp310-2]
 gi|161509682|ref|YP_001575341.1| terminase large subunit [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|62636085|gb|AAX91196.1| ORF005 [Staphylococcus phage 47]
 gi|87128154|gb|ABD22668.1| phiSLT ORF 563-like protein, terminase, large subunit
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|154818080|gb|ABS87507.1| putative terminase large subunit [Staphylococcus phage tp310-2]
 gi|160368491|gb|ABX29462.1| terminase large subunit [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|302333121|gb|ADL23314.1| phage terminase large subunit [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|315197734|gb|EFU28068.1| terminase large subunit [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140397|gb|EFW32252.1| hypothetical protein HMPREF9528_01293 [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320142759|gb|EFW34562.1| hypothetical protein HMPREF9529_01859 [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 563

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 54/378 (14%), Positives = 99/378 (26%), Gaps = 63/378 (16%)

Query: 22  AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81
            E       F+   F    KG   +   QP  WQ   + ++    H           +  
Sbjct: 54  EELAHRPIRFIE-KFCKPSKGSKRQLVLQP--WQHFIIGSLFGWVHK--ETKLRRFKEAL 108

Query: 82  ISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
           I  GR  GKTT  + +  + +S     G  I  +AN   Q +  L+ E    +   P   
Sbjct: 109 IFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKASP--- 164

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                           +L +    +  + +     +    +          +      DE
Sbjct: 165 ----------------KLDKNFRTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDE 208

Query: 200 ASGTPD-IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT- 257
                D  +   I              +T+   +L+G   D+     +   +   D RT 
Sbjct: 209 IHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVDMVEAGRDTLDQIIEDERTF 268

Query: 258 --------------------------VEGIDSGFHEGIISRYGLDSDV--ARIEILGQFP 289
                                     V        E         ++      +    F 
Sbjct: 269 YYLASLDDDDDINDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFA 328

Query: 290 QQEVNNFIPHNYIEEAMSR-EAIDDLYAPLIMGCDIAGEGGDKTV----VVFRRGNIIEH 344
             +  +FI +  +++        +    P  +G D++    D T          G +   
Sbjct: 329 NNDEMSFIDYPTLQKNNEIVSLEELEGRPCTIGYDLSET-EDFTAACATFALDNGKVAVL 387

Query: 345 IFDWSAKLIQETNQEGCP 362
              W  K   E + E  P
Sbjct: 388 SHSWIPKHKVEYSNEKIP 405


>gi|262049872|ref|ZP_06022734.1| prophage L54a, terminase, large subunit, putative [Staphylococcus
           aureus D30]
 gi|259162021|gb|EEW46601.1| prophage L54a, terminase, large subunit, putative [Staphylococcus
           aureus D30]
 gi|315128432|gb|EFT84440.1| phage Terminase [Staphylococcus aureus subsp. aureus CGS03]
          Length = 563

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 54/378 (14%), Positives = 99/378 (26%), Gaps = 63/378 (16%)

Query: 22  AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81
            E       F+   F    KG   +   QP  WQ   + ++    H           +  
Sbjct: 54  EELAHRPIRFIE-KFCKPSKGSKRQLVLQP--WQHFIIGSLFGWVHK--ETKLRRFKEAL 108

Query: 82  ISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
           I  GR  GKTT  + +  + +S     G  I  +AN   Q +  L+ E    +   P   
Sbjct: 109 IFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKASP--- 164

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                           +L +    +  + +     +    +          +      DE
Sbjct: 165 ----------------KLDKNFRTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDE 208

Query: 200 ASGTPD-IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT- 257
                D  +   I              +T+   +L+G   D+     +   +   D RT 
Sbjct: 209 IHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVDMVEAGRDTLDQIIEDERTF 268

Query: 258 --------------------------VEGIDSGFHEGIISRYGLDSDV--ARIEILGQFP 289
                                     V        E         ++      +    F 
Sbjct: 269 YYLASLDDDDDINDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFA 328

Query: 290 QQEVNNFIPHNYIEEAMSR-EAIDDLYAPLIMGCDIAGEGGDKTV----VVFRRGNIIEH 344
             +  +FI +  +++        +    P  +G D++    D T          G +   
Sbjct: 329 NNDEMSFIDYPTLQKNNEIVSLEELEGRPCTIGYDLSET-EDFTAACATFALDNGKVAVL 387

Query: 345 IFDWSAKLIQETNQEGCP 362
              W  K   E + E  P
Sbjct: 388 SHSWIPKHKVEYSNEKIP 405


>gi|257428234|ref|ZP_05604632.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257275075|gb|EEV06562.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus
           65-1322]
          Length = 566

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 54/378 (14%), Positives = 99/378 (26%), Gaps = 63/378 (16%)

Query: 22  AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81
            E       F+   F    KG   +   QP  WQ   + ++    H           +  
Sbjct: 57  EELAHRPIRFIE-KFCKPSKGSKRQLVLQP--WQHFIIGSLFGWVHK--ETKLRRFKEAL 111

Query: 82  ISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
           I  GR  GKTT  + +  + +S     G  I  +AN   Q +  L+ E    +   P   
Sbjct: 112 IFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKASP--- 167

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                           +L +    +  + +     +    +          +      DE
Sbjct: 168 ----------------KLDKNFRTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDE 211

Query: 200 ASGTPD-IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT- 257
                D  +   I              +T+   +L+G   D+     +   +   D RT 
Sbjct: 212 IHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVDMVEAGRDTLDQIIEDERTF 271

Query: 258 --------------------------VEGIDSGFHEGIISRYGLDSDV--ARIEILGQFP 289
                                     V        E         ++      +    F 
Sbjct: 272 YYLASLDDDDDINDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFA 331

Query: 290 QQEVNNFIPHNYIEEAMSR-EAIDDLYAPLIMGCDIAGEGGDKTV----VVFRRGNIIEH 344
             +  +FI +  +++        +    P  +G D++    D T          G +   
Sbjct: 332 NNDEMSFIDYPTLQKNNEIVSLEELEGRPCTIGYDLSET-EDFTAACATFALDNGKVAVL 390

Query: 345 IFDWSAKLIQETNQEGCP 362
              W  K   E + E  P
Sbjct: 391 SHSWIPKHKVEYSNEKIP 408


>gi|262401641|ref|ZP_06078207.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC586]
 gi|262352058|gb|EEZ01188.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC586]
          Length = 416

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/318 (12%), Positives = 78/318 (24%), Gaps = 50/318 (15%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           +      FS+P + Q E +                       SA  G GKT   A   L 
Sbjct: 16  EAIEEMGFSRPTQVQAEAIPQALDG------------RDVLASAPTGTGKTAAFAIPALQ 63

Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
            +   P        I+ +  +         AE ++ L+     + F +     +      
Sbjct: 64  YLLDFPRRKPGPARILILTPTRELAMQV--AEQAQALAKNTRLNIFTITGGVQYQEHADI 121

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
               Q +        +                       +  DEA    D+     +   
Sbjct: 122 LATTQDI--------VVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173

Query: 216 TELNPNRFWIMTSNTRRLN------------GWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
           +     R   +  +                    +     P  + K+        + +  
Sbjct: 174 STECRWRKQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPH 233

Query: 264 --GFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AID 312
                + I++     S V     E L     +     IP  +I  E    R         
Sbjct: 234 KVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFR 293

Query: 313 DLYAPLIMGCDIAGEGGD 330
           +    +++  D+A  G D
Sbjct: 294 EGDVNILLATDVAARGID 311


>gi|262155805|ref|ZP_06028928.1| putative phage terminase [Vibrio cholerae INDRE 91/1]
 gi|262030396|gb|EEY49037.1| putative phage terminase [Vibrio cholerae INDRE 91/1]
          Length = 586

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/350 (11%), Positives = 90/350 (25%), Gaps = 63/350 (18%)

Query: 22  AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81
           A+ V+ F  F+        KGK      +   WQ   + ++    + +            
Sbjct: 77  AQRVIDFYKFIRHT-----KGKLARTVMKLMPWQQFCVGSIVGWVYKDTGFRRFKQANIW 131

Query: 82  ISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
           ++  R  GK+TL + + L+ +      G  I  IA  + Q K  ++ +  + LSM   + 
Sbjct: 132 VA--RKNGKSTLASGLGLYFLIADGEVGAEIYSIAVKKDQAK-IVFDDAVRMLSMSELKE 188

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
              ++  S+     +A+ +                                +      DE
Sbjct: 189 ILTVKRDSITFDAEFAKFVPL--------------------ASDSNSLDGLNTHCFIADE 228

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTR---------------------------R 232
                D     ++   T           S                               
Sbjct: 229 LHSWKDRNLWGVMETSTGAREQPLAFSISTAGWILDGIGKELFDDGCTILENYGLEENVF 288

Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL---DSDVARIEILGQFP 289
              +  D  +   +     + +      +     E +  +      +      + L  + 
Sbjct: 289 TMNYTLDDGDKFNDRTCWIKANPCLGVSVKEEDIERLCRKAERMASERANFLTKRLNVWV 348

Query: 290 QQEVNNFIPHNYIEEAMSREAIDD--LYAPLIMGCDIAGEGGDKTVVVFR 337
                 ++  + + +     A  +       I+G D A      +V    
Sbjct: 349 NNAE-AWLNLDKLYKCADPNARLEDFEGRDCIIGVDFADYLDLTSVCYLF 397


>gi|297565631|ref|YP_003684603.1| hypothetical protein Mesil_1197 [Meiothermus silvanus DSM 9946]
 gi|296850080|gb|ADH63095.1| hypothetical protein Mesil_1197 [Meiothermus silvanus DSM 9946]
          Length = 434

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 66/265 (24%), Gaps = 22/265 (8%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS--MLPH 137
             + AG   GKT+     +   I  +     I    +   L+  L  E  K     +L  
Sbjct: 35  VLVLAGTQGGKTSFGPLWLYREIQRKGPGDYIVATPTFPLLELKLLPEFRKLFEQHLLLG 94

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
           R+        +     +     +  G D     +                 +    A + 
Sbjct: 95  RYVGSPSKKFVFSPEGFERTFGRRPGPDDAPVQVFF-----GHAQDPDSLESATAKAAWL 149

Query: 198 DEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE----DWKRY 251
           DEA          ++IL   +        ++ + T    GW     + P      D +  
Sbjct: 150 DEAGQKKFRRDSWQAILRRLSIHQGR---VLITTTPYYLGWLKADLHDPARQGHPDIELV 206

Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311
              +          +E   +          +   G F +            E  +     
Sbjct: 207 NFKSVDNPNFPRAEYERARATLPR--WKFDMFYNGLFTRPA-GQIYDCFDPEVHVRPAFN 263

Query: 312 DDLYAPLIMGCDIAGEGGDKTVVVF 336
                P  +G D    GG  T  V 
Sbjct: 264 VPEDWPRFIGLD---FGGVNTAAVK 285


>gi|315145947|gb|EFT89963.1| conserved hypothetical protein [Enterococcus faecalis TX2141]
          Length = 577

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/374 (10%), Positives = 88/374 (23%), Gaps = 71/374 (18%)

Query: 6   STDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVH 65
           ST +   Q L             K +    + W              +WQ         +
Sbjct: 64  STGEWSGQPLELEDWQ-------KFYFSNIYGWQKWS---------DKWQRNVRVIRKSY 107

Query: 66  CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNT 123
                 N                GK+ +    +L+ +      G    C+A    Q +N 
Sbjct: 108 LQVPKKN----------------GKSLMEGAPILYGMYGEGVKGAQFYCLAADFDQAQNV 151

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR--------- 174
                +   +         +       +       E      +    ++ R         
Sbjct: 152 ANPLATVIENDNDLLDGTRVYRKEKKVTTISYAFFEDDFKYQNNLRVLSKREKVDGKNTY 211

Query: 175 -TYSEERPDTFVGPHNT----------HGMAVFNDEASG----TPDIINKSILGFFTELN 219
              ++E  +                    + +    A          I +       E N
Sbjct: 212 IVVADEVHEWEDTSRYDGLKSGQAAQPEPLFLVCSTAGKNSGALGVQIYQDSKHILEEDN 271

Query: 220 PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279
            + ++IM     +   W  +     +         +  +  +   F + + + +      
Sbjct: 272 DDDWFIMIYEPNKGYNWEDEKVWEMV---NPNLYVSFDITFLRGEFKDALRNPFRK--AE 326

Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFR-- 337
              + L  F     N +     I+  +  +  D     + +G D++    D T V     
Sbjct: 327 FLSKHLNVFVNYAEN-YFDKEQIDNCLVDDLGDITGEQVTIGIDLSRT-TDLTCVSINIP 384

Query: 338 ----RGNIIEHIFD 347
                G  I  I  
Sbjct: 385 TFNDEGESIIKIKQ 398


>gi|229008925|ref|ZP_04166279.1| phage terminase, large subunit [Bacillus mycoides Rock1-4]
 gi|228752362|gb|EEM02036.1| phage terminase, large subunit [Bacillus mycoides Rock1-4]
          Length = 522

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/335 (11%), Positives = 91/335 (27%), Gaps = 50/335 (14%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTR--PGM 108
             WQ  +   +      N +     + + A +   +  GKT +    +++ +      G 
Sbjct: 24  ESWQKFYFANIYGWQKYNEDGKAVRVIRTAYLQVPKKNGKTIMGGSPVIYAMYGEGVKGA 83

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
                AN+  Q +N     ++  +   P        +          + ++ +   D   
Sbjct: 84  DCYISANTFEQCQNAAGP-IALTIENSPD---LRPDTRIYKGKEDTIKSIKYTFVEDDIK 139

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNRFWIMT 227
           Y    +  +++           +    + DE  +        ++             I+T
Sbjct: 140 YANVIKVLTKDNAGNE----GKNPYINYFDEVHAQMDREQYDNLRSAQIAQEEPLN-IIT 194

Query: 228 SNTRRLNG---------------------WFYDIFNIPLE-DWKRYQIDTRTVEGIDSGF 265
           S   +  G                     WF  I+    + DW+   +       +D   
Sbjct: 195 STAGKNTGSLGTQIYTYAKEVLDKDKDDSWFMMIYEPNKKFDWENRDVWRMVNPNMDVSV 254

Query: 266 HEGIISRYGLD-------SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
           +   +     +             + L  F       +   + +++ +     D      
Sbjct: 255 NMEFLENAFKEAQNNSFNKAEFLSKHLDVFVNYAET-YFDKDQLDKMLVDYLKDVEGLTC 313

Query: 319 IMGCDIAGEGGDKTVVVFR------RGNIIEHIFD 347
           ++G D++    D T V          GN I  +  
Sbjct: 314 VIGVDLSRR-TDLTCVSINVPTYDEEGNAILIVKQ 347


>gi|215401146|ref|YP_002332401.1| putative terminase large subunit [Staphylococcus phage
           phiSauS-IPLA35]
 gi|215260497|gb|ACJ64627.1| gp38 [Staphylococcus phage phiSauS-IPLA35]
          Length = 566

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 54/378 (14%), Positives = 99/378 (26%), Gaps = 63/378 (16%)

Query: 22  AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81
            E       F+   F    KG   +   QP  WQ   + ++    H           +  
Sbjct: 57  EELAHRPIRFIE-KFCKPSKGSKRQLVLQP--WQHFIIGSLFGWVHK--ETKLRRFKEAL 111

Query: 82  ISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
           I  GR  GKTT  + +  + +S     G  I  +AN   Q +  L+ E    +   P   
Sbjct: 112 IFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKASP--- 167

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                           +L +    +  + +     +    +          +      DE
Sbjct: 168 ----------------KLDKNFRTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDE 211

Query: 200 ASGTPD-IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT- 257
                D  +   I              +T+   +L+G   D+     +   +   D RT 
Sbjct: 212 IHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVDMVEAGRDTLDQIIEDERTF 271

Query: 258 --------------------------VEGIDSGFHEGIISRYGLDSDV--ARIEILGQFP 289
                                     V        E         ++      +    F 
Sbjct: 272 YYLASLDDDDDINDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFA 331

Query: 290 QQEVNNFIPHNYIEEAMSR-EAIDDLYAPLIMGCDIAGEGGDKTV----VVFRRGNIIEH 344
             +  +FI +  +++        +    P  +G D++    D T          G +   
Sbjct: 332 NNDEMSFIDYPTLQKNNEIVSLEELEGRPCTIGYDLSET-EDFTAACATFALDNGKVAVL 390

Query: 345 IFDWSAKLIQETNQEGCP 362
              W  K   E + E  P
Sbjct: 391 SHSWIPKHKVEYSNEKIP 408


>gi|209966369|ref|YP_002299284.1| hypothetical protein RC1_3107 [Rhodospirillum centenum SW]
 gi|209959835|gb|ACJ00472.1| conserved hypothetical protein [Rhodospirillum centenum SW]
          Length = 511

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 45/171 (26%), Gaps = 24/171 (14%)

Query: 28  FKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRG 87
              F      W      L+    P    LE  + ++               +  + A R 
Sbjct: 3   PVRFTEFLALWNH----LQGRGTPDL-HLEMADWLEDALARG-------RRELLLLAFRD 50

Query: 88  IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
            GK+++      W ++  P   I+ +A   T  K  +   V + +   P     + +   
Sbjct: 51  SGKSSIVGLYCAWRLARDPDCRILVLAADLTLAKKMV-RTVKRVVERHPLCAGLKPEKRE 109

Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
           L  +  +                   R  S            +H   V  D
Sbjct: 110 LWGAEAFTLQRPL-----------VGRDPSMAAQGVGGNFTGSHADLVVCD 149


>gi|229104554|ref|ZP_04235220.1| Prophage LambdaBa02, terminase, large subunit [Bacillus cereus
           Rock3-28]
 gi|228678890|gb|EEL33101.1| Prophage LambdaBa02, terminase, large subunit [Bacillus cereus
           Rock3-28]
          Length = 562

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/307 (10%), Positives = 77/307 (25%), Gaps = 34/307 (11%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
             WQ   + ++    H +            I  GR  GKTT+ + +  + ++    PG  
Sbjct: 80  QPWQHFVIGSLYGWVHKDTGYRRFREGLIFI--GRKNGKTTMISGLSNYAVAKDNEPGAR 137

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK-- 167
           +  +AN++ Q    L+ E    +   P       ++            +E       K  
Sbjct: 138 VYVLANTKQQAGE-LFDESRAMVQKSPLLRKHLRENQKGIFHDKTHSKIEPRASDSKKLD 196

Query: 168 ---------HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--------KS 210
                          + +                M V+   A    +             
Sbjct: 197 GLNTHLGIFDEIHEFKNFKLINVIKKSRGARKQPMIVYITTAGYQLEGPLVQYYEIATDV 256

Query: 211 ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGII 270
           + G   +     F     +   +      I   P          +  +  +   ++    
Sbjct: 257 LEGVIDQDRKFYFMAEMDSVDEIENPELWIKANPN------MGVSLDLPSLIDDWNTDKH 310

Query: 271 SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLIMGCDIAGEGG 329
           +       + +      F   +  +F+    ++      +         + G D++    
Sbjct: 311 TDAEKYDWITKQF--NIFVDNDEMSFVGIEILKRNEEVIDIKGLAGKECVAGYDLSAT-E 367

Query: 330 DKTVVVF 336
           D T    
Sbjct: 368 DFTSACL 374


>gi|195058057|ref|XP_001995378.1| GH23128 [Drosophila grimshawi]
 gi|193899584|gb|EDV98450.1| GH23128 [Drosophila grimshawi]
          Length = 1294

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 67/234 (28%), Gaps = 9/234 (3%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              +    G+GKT + + +M  L    P   +I +A +   +      +++    ++P  
Sbjct: 65  NTLVVLPTGLGKTFIASVVMYNLHRWFPRSKLIFMAPTRPLVAQ----QIAACHKIMPLP 120

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               ++     P    AEL        +    +      ++               +  D
Sbjct: 121 ASDVVELTGRLPRAKRAELWRSKRVFFATPQVVQSDMLEQQEQADGFQFPYEDIKLLVVD 180

Query: 199 EAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLN--GWFYDIFNIPLEDWKRYQIDT 255
           EA           +       NP+   +  S T             N+ +   +    D+
Sbjct: 181 EAHRAKGRYAYTQVTESLMARNPHFRMLALSATPGRTMEDVAAVCRNLYISHLEVRCDDS 240

Query: 256 RTV-EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR 308
             V   +     + I+          R  +L Q     +   I  + ++ A  +
Sbjct: 241 IDVRPYVHHRSLDTIVVPLADRIKEPRERLL-QIIDPYLRQLIAADVLKGARGK 293


>gi|261212229|ref|ZP_05926515.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC341]
 gi|260838837|gb|EEX65488.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC341]
          Length = 421

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/318 (12%), Positives = 78/318 (24%), Gaps = 50/318 (15%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           +      FS+P + Q E +                       SA  G GKT   A   L 
Sbjct: 16  EAIEEMGFSRPTQVQAEAIPQALDG------------RDVLASAPTGTGKTAAFAIPALQ 63

Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
            +   P        I+ +  +         AE ++ L+     + F +     +      
Sbjct: 64  YLLDFPRRKAGPARILILTPTRELAMQV--AEQAQALAKNTRLNIFTITGGVQYQEHADI 121

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
               Q +        +                       +  DEA    D+     +   
Sbjct: 122 LATTQDI--------VVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173

Query: 216 TELNPNRFWIMTSNTRRLN------------GWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
           +     R   +  +                    +     P  + K+        + +  
Sbjct: 174 STECRWRKQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPH 233

Query: 264 --GFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AID 312
                + I++     S V     E L     +     IP  +I  E    R         
Sbjct: 234 KVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAITRFR 293

Query: 313 DLYAPLIMGCDIAGEGGD 330
           +    +++  D+A  G D
Sbjct: 294 EGDVNILLATDVAARGID 311


>gi|311068527|ref|YP_003973450.1| hypothetical protein BATR1942_07900 [Bacillus atrophaeus 1942]
 gi|310869044|gb|ADP32519.1| hypothetical protein BATR1942_07900 [Bacillus atrophaeus 1942]
          Length = 563

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/351 (11%), Positives = 78/351 (22%), Gaps = 49/351 (13%)

Query: 20  MHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFM-EAVDVHCHSNVNNSNPTIF 78
           M    +  F         WG K         P ++   F    +  +       S    +
Sbjct: 6   MSQRKIDGFIKLAEVI-QWGRKN--------PVKFVERFFGMELLDYQKYAFIESWYKQY 56

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
                 GR  GKTTL +  ++      P      +A   +Q +             +   
Sbjct: 57  VLWCM-GRNSGKTTLGSPFIMAKSLLIPNFQAYILAGVGSQSQEMFLKIEKIAKREIASF 115

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                   +                   ++        +     +F    +      F D
Sbjct: 116 TGLTDIFYNETVKSAANTDGFTHNPASFQYKLYNGSIVNSLN-GSFDNNRSKRSNLNFYD 174

Query: 199 EASGTPDIINKSILG----------------FFTELNPNRFWIMTSNTRRLNGWFYDIFN 242
           E+   PD +  +                              I  S+    + +FY  ++
Sbjct: 175 ESGFAPDELFTTSEPFAVQNSDFRLGGDVDVTLFPKQMPNQLIYASSASSTDTYFYRKYS 234

Query: 243 IPLED---------WKRYQIDTRTVEGIDSGFH-------EGIISRYGLDSDVARIEILG 286
              +                D       +   +       E + +    + + A  E   
Sbjct: 235 DFAKKMFLGDKRYFVADISSDIVINATFNGKLYPVSLLSQETVDAAMRDNKEKAMREYKN 294

Query: 287 QF-PQQEVNNFIPHNYIEEAMSREAID---DLYAPLIMGCDIAGEGGDKTV 333
            F  +   N  I    I             D     +   D A    D +V
Sbjct: 295 IFTTEGSDNQIIKRAMIIRNSETRPPVLVNDGNRKFLFAIDPAR-NHDNSV 344


>gi|238920149|ref|YP_002933664.1| hypothetical protein NT01EI_2255 [Edwardsiella ictaluri 93-146]
 gi|238869718|gb|ACR69429.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 601

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 46/320 (14%), Positives = 92/320 (28%), Gaps = 33/320 (10%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
           F++ +  +     +N    +        R IG T   A+             I   A S 
Sbjct: 149 FLDNLFKYQLHLRDNKFRRVRNL--LKARQIGATYYFAFEAFEDAVLTGDNQIFLSA-SR 205

Query: 118 TQLK-------NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
            Q +            E    L   P R     +   L  +   A+     + ID   + 
Sbjct: 206 RQAEVFRTYILKIAQVEFGIQLKGNPIRLSNMAELHFLATNSNTAQSNSGHLYIDEYLWI 265

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
               T++E    + +   +   +  F+  ++             +   N  R  ++    
Sbjct: 266 SKFTTFNE--VASGMATQSHWRLTYFSTPSAKNHQGYAFWSGDEWRRGNAERKSVVFPAF 323

Query: 231 RRLNGWFYDIFNIPLEDWK-RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
             L     +    P + W+    ++    +G +    E +  RYG   +      +  F 
Sbjct: 324 DELRDGGREC---PDKQWRYVVTMEDAIADGFNRADIEELRERYGE--NAFNRLYMCVFV 378

Query: 290 QQEVNNFIPHNYI----EEAMSREAIDDLYAPL----IMG-CDIAGEGGDKT--VVVF-- 336
             + + F     +    +  + ++   D  APL    + G  D A  G + T  V+    
Sbjct: 379 DDKDSVFDFAKLVRCGVDPHIWQDFHPDEAAPLGNREVWGGFDPARSGDNATFVVIAVPL 438

Query: 337 --RRGNIIEHIFDWSAKLIQ 354
                  +     W     Q
Sbjct: 439 LAVERFRVLEKHHWRGLSFQ 458


>gi|284024511|ref|ZP_06378909.1| phiSLT ORF 563-like protein, terminase, large subunit
           [Staphylococcus aureus subsp. aureus 132]
          Length = 563

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 47/348 (13%), Positives = 90/348 (25%), Gaps = 60/348 (17%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
             WQ   + ++    H           +  I  GR  GKTT  + +  + +S     G  
Sbjct: 81  QPWQHFIIGSLFGWVHK--ETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAE 138

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I  +AN   Q +  L+ E    +   P                   +L +    +  + +
Sbjct: 139 IHLLANVMKQAR-ILFDESKAMIKASP-------------------KLDKNFRTLRDEIH 178

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTS 228
                +    +          +      DE     D  +   I              +T+
Sbjct: 179 YDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITT 238

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRT---------------------------VEGI 261
              +L+G   D+     +   +   D RT                           V   
Sbjct: 239 AGYQLDGPLVDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSIN 298

Query: 262 DSGFHEGIISRYGLDSDV--ARIEILGQFPQQEVNNFIPHNYIEEAMSR-EAIDDLYAPL 318
                E         ++      +    F   +  +FI +  +++        +    P 
Sbjct: 299 LDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYPTLQKNNEIVSLEELEGRPC 358

Query: 319 IMGCDIAGEGGDKTV----VVFRRGNIIEHIFDWSAKLIQETNQEGCP 362
            +G D++    D T          G +      W  K   E + E  P
Sbjct: 359 TIGYDLSET-EDFTAACATFALDNGKVAVLSHSWIPKHKVEYSNEKIP 405


>gi|258420300|ref|ZP_05683247.1| gp38 [Staphylococcus aureus A9719]
 gi|258448839|ref|ZP_05696949.1| phage terminase large subunit [Staphylococcus aureus A6224]
 gi|282919225|ref|ZP_06326960.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus
           C427]
 gi|295407561|ref|ZP_06817354.1| phage terminase [Staphylococcus aureus A8819]
 gi|297246591|ref|ZP_06930424.1| phage terminase [Staphylococcus aureus A8796]
 gi|257843725|gb|EEV68127.1| gp38 [Staphylococcus aureus A9719]
 gi|257857876|gb|EEV80767.1| phage terminase large subunit [Staphylococcus aureus A6224]
 gi|282317035|gb|EFB47409.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus
           C427]
 gi|294967580|gb|EFG43616.1| phage terminase [Staphylococcus aureus A8819]
 gi|297176549|gb|EFH35814.1| phage terminase [Staphylococcus aureus A8796]
          Length = 566

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 47/348 (13%), Positives = 90/348 (25%), Gaps = 60/348 (17%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
             WQ   + ++    H           +  I  GR  GKTT  + +  + +S     G  
Sbjct: 84  QPWQHFIIGSLFGWVHK--ETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAE 141

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I  +AN   Q +  L+ E    +   P                   +L +    +  + +
Sbjct: 142 IHLLANVMKQAR-ILFDESKAMIKASP-------------------KLDKNFRTLRDEIH 181

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTS 228
                +    +          +      DE     D  +   I              +T+
Sbjct: 182 YDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITT 241

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRT---------------------------VEGI 261
              +L+G   D+     +   +   D RT                           V   
Sbjct: 242 AGYQLDGPLVDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSIN 301

Query: 262 DSGFHEGIISRYGLDSDV--ARIEILGQFPQQEVNNFIPHNYIEEAMSR-EAIDDLYAPL 318
                E         ++      +    F   +  +FI +  +++        +    P 
Sbjct: 302 LDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYPTLQKNNEIVSLEELEGRPC 361

Query: 319 IMGCDIAGEGGDKTV----VVFRRGNIIEHIFDWSAKLIQETNQEGCP 362
            +G D++    D T          G +      W  K   E + E  P
Sbjct: 362 TIGYDLSET-EDFTAACATFALDNGKVAVLSHSWIPKHKVEYSNEKIP 408


>gi|160700654|ref|YP_001552334.1| gp5 [Mycobacterium phage Giles]
 gi|159136604|gb|ABW88400.1| gp5 [Mycobacterium phage Giles]
          Length = 544

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 53/224 (23%), Gaps = 22/224 (9%)

Query: 54  WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113
           WQ +    +      +   ++P +        R  GKT L A  +++ +    G  I+  
Sbjct: 78  WQWDAARKIMAT-RPDGLWAHPDVCLII---PRQNGKTQLIALRIIYGLF-FLGEKIVYT 132

Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173
           A     +K+     V                SL              S          T 
Sbjct: 133 AQRWQTVKDVYDRIVEIIKRRP---------SLLRRLKPMPGVPDGYSEAGQHGEIYTTN 183

Query: 174 RTYSEERPDTFVGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT-- 230
               +  P T               DEA    D++   + G        +  I  S    
Sbjct: 184 GGSLDMGPRTKAVGRGQTKIDLAIFDEAYDIKDVLVGGLTGAQKAATNPQT-IYISTAAV 242

Query: 231 ----RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGII 270
                          N   ++   Y  +     G+     E   
Sbjct: 243 ASEHPDCGVLAGMRRNGQRKEPDLYAAEWCAPPGMARDDPEAWR 286


>gi|49485838|ref|YP_043059.1| terminase large subunit [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|49244281|emb|CAG42708.1| terminase large subunit [Staphylococcus aureus subsp. aureus
           MSSA476]
          Length = 566

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 47/348 (13%), Positives = 90/348 (25%), Gaps = 60/348 (17%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
             WQ   + ++    H           +  I  GR  GKTT  + +  + +S     G  
Sbjct: 84  QPWQHFIIGSLFGWVHK--ETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAE 141

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I  +AN   Q +  L+ E    +   P                   +L +    +  + +
Sbjct: 142 IHLLANVMKQAR-ILFDESKAMIKASP-------------------KLDKNFRTLRDEIH 181

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTS 228
                +    +          +      DE     D  +   I              +T+
Sbjct: 182 YDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITT 241

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRT---------------------------VEGI 261
              +L+G   D+     +   +   D RT                           V   
Sbjct: 242 AGYQLDGPLVDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSIN 301

Query: 262 DSGFHEGIISRYGLDSDV--ARIEILGQFPQQEVNNFIPHNYIEEAMSR-EAIDDLYAPL 318
                E         ++      +    F   +  +FI +  +++        +    P 
Sbjct: 302 LDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYPTLQKNNEIVSLEELEGRPC 361

Query: 319 IMGCDIAGEGGDKTV----VVFRRGNIIEHIFDWSAKLIQETNQEGCP 362
            +G D++    D T          G +      W  K   E + E  P
Sbjct: 362 TIGYDLSET-EDFTAACATFALDNGKVAVLSHSWIPKHKVEYSNEKIP 408


>gi|282905860|ref|ZP_06313715.1| gp38 [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282921761|ref|ZP_06329478.1| phage terminase, large subunit [Staphylococcus aureus A9765]
 gi|282927347|ref|ZP_06334965.1| phage terminase, large subunit [Staphylococcus aureus A10102]
 gi|282331152|gb|EFB60666.1| gp38 [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282590671|gb|EFB95747.1| phage terminase, large subunit [Staphylococcus aureus A10102]
 gi|282594023|gb|EFB99012.1| phage terminase, large subunit [Staphylococcus aureus A9765]
          Length = 566

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 47/348 (13%), Positives = 90/348 (25%), Gaps = 60/348 (17%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
             WQ   + ++    H           +  I  GR  GKTT  + +  + +S     G  
Sbjct: 84  QPWQHFIIGSLFGWVHK--ETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAE 141

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I  +AN   Q +  L+ E    +   P                   +L +    +  + +
Sbjct: 142 IHLLANVMKQAR-ILFDESKAMIKASP-------------------KLDKNFRTLRDEIH 181

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTS 228
                +    +          +      DE     D  +   I              +T+
Sbjct: 182 YDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITT 241

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRT---------------------------VEGI 261
              +L+G   D+     +   +   D RT                           V   
Sbjct: 242 AGYQLDGPLVDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSIN 301

Query: 262 DSGFHEGIISRYGLDSDV--ARIEILGQFPQQEVNNFIPHNYIEEAMSR-EAIDDLYAPL 318
                E         ++      +    F   +  +FI +  +++        +    P 
Sbjct: 302 LDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYPTLQKNNEIVSLEELEGRPC 361

Query: 319 IMGCDIAGEGGDKTV----VVFRRGNIIEHIFDWSAKLIQETNQEGCP 362
            +G D++    D T          G +      W  K   E + E  P
Sbjct: 362 TIGYDLSET-EDFTAACATFALDNGKVAVLSHSWIPKHKVEYSNEKIP 408


>gi|257091053|ref|ZP_05585414.1| terminase large subunit [Enterococcus faecalis CH188]
 gi|256999865|gb|EEU86385.1| terminase large subunit [Enterococcus faecalis CH188]
          Length = 577

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/374 (10%), Positives = 88/374 (23%), Gaps = 71/374 (18%)

Query: 6   STDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVH 65
           ST +   Q L             K +    + W              +WQ         +
Sbjct: 64  STGEWSGQPLELEDWQ-------KFYFSNIYGWQKWS---------DKWQRNVRVIRKSY 107

Query: 66  CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNT 123
                 N                GK+ +    +L+ +      G    C+A    Q +N 
Sbjct: 108 LQVPKKN----------------GKSLMEGAPILYGMYGEGVKGAQFYCLAADFDQAQNV 151

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR--------- 174
                +   +         +       +       E      +    ++ R         
Sbjct: 152 ANPLATVIENDNDLLDGTRVYRKEKKVTTISYAFFEDDFKYQNNLRVLSKREKVDGKNTY 211

Query: 175 -TYSEERPDTFVGPHNT----------HGMAVFNDEASG----TPDIINKSILGFFTELN 219
              ++E  +                    + +    A          I +       E N
Sbjct: 212 IVVADEVHEWEDTSRYDGLKSGQAAQPEPLFLVCSTAGKNSGALGVQIYQDSKHILEEDN 271

Query: 220 PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279
            + ++IM     +   W  +     +         +  +  +   F + + + +      
Sbjct: 272 DDDWFIMIYEPNKGYNWEDEKVWEMV---NPNLYVSFDITFLRGEFKDALRNPFRK--AE 326

Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFR-- 337
              + L  F     N +     I+  +  +  D     + +G D++    D T V     
Sbjct: 327 FLSKHLNVFVNYAEN-YFDKEQIDNCLVDDLGDITGEQVTIGIDLSRT-TDLTCVSINIP 384

Query: 338 ----RGNIIEHIFD 347
                G  I  I  
Sbjct: 385 TFNDEGESIIKIKQ 398


>gi|144898790|emb|CAM75654.1| DNA maturase B [Magnetospirillum gryphiswaldense MSR-1]
          Length = 495

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/324 (11%), Positives = 75/324 (23%), Gaps = 58/324 (17%)

Query: 54  WQLEFMEAVDVHCHS----NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           W  +  ++   H                 +  + A R  GK+T+      W +   P + 
Sbjct: 14  WNAKLGQSTPPHHLRMARWLARKYKSHHRELLLMAFRNSGKSTIVGLFCAWALLCDPNLR 73

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           II +A      K  +   V + +   P     + +      S  +       +   S   
Sbjct: 74  IIILAADFALAKKMV-RNVKRIIERHPLTQGLKPKRRDHWASDQFTVNRPGELRDPSMVA 132

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS------------ILGFFTE 217
                  +  R +            V  D+    P+  + +            I      
Sbjct: 133 KGIGANITGSRAE-----------IVICDDVE-VPNTCDSAPKRQDLRERLGEIEYVLVP 180

Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR--TVEGIDSGFHEGIISRYGL 275
                  +           +     +   + + +        +  +D         R+  
Sbjct: 181 GG---LQLYVGTPHSFYTIYAAQARLEAGEERPFLDGFHRLELPLLDKNGASAWPERFPA 237

Query: 276 DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMG-------------- 321
           D         G          +P N  +  +  + +    A L+                
Sbjct: 238 DKIAGIRRRTGPNKFDSQMMLMPVNIADGRLDPDRLRLYQADLVYAEGNGLPVLSLDDKR 297

Query: 322 -------CDIAGEG---GDKTVVV 335
                   D A      GD +VV 
Sbjct: 298 LVSASCWWDPAYGAPGKGDASVVA 321


>gi|57651294|ref|YP_185259.1| prophage L54a, terminase, large subunit, putative [Staphylococcus
           aureus subsp. aureus COL]
 gi|66395593|ref|YP_239935.1| ORF005 [Staphylococcus phage 3A]
 gi|148267493|ref|YP_001246436.1| phage terminase [Staphylococcus aureus subsp. aureus JH9]
 gi|150393547|ref|YP_001316222.1| phage terminase [Staphylococcus aureus subsp. aureus JH1]
 gi|262052891|ref|ZP_06025074.1| prophage L54a, terminase, large subunit, putative [Staphylococcus
           aureus 930918-3]
 gi|57285480|gb|AAW37574.1| prophage L54a, terminase, large subunit, putative [Staphylococcus
           aureus subsp. aureus COL]
 gi|62635939|gb|AAX91050.1| ORF005 [Staphylococcus phage 3A]
 gi|147740562|gb|ABQ48860.1| phage Terminase [Staphylococcus aureus subsp. aureus JH9]
 gi|149945999|gb|ABR51935.1| phage Terminase [Staphylococcus aureus subsp. aureus JH1]
 gi|259159198|gb|EEW44259.1| prophage L54a, terminase, large subunit, putative [Staphylococcus
           aureus 930918-3]
 gi|329730589|gb|EGG66974.1| putative phage terminase, large subunit [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 563

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 47/348 (13%), Positives = 90/348 (25%), Gaps = 60/348 (17%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
             WQ   + ++    H           +  I  GR  GKTT  + +  + +S     G  
Sbjct: 81  QPWQHFIIGSLFGWVHK--ETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAE 138

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I  +AN   Q +  L+ E    +   P                   +L +    +  + +
Sbjct: 139 IHLLANVMKQAR-ILFDESKAMIKASP-------------------KLDKNFRTLRDEIH 178

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTS 228
                +    +          +      DE     D  +   I              +T+
Sbjct: 179 YDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITT 238

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRT---------------------------VEGI 261
              +L+G   D+     +   +   D RT                           V   
Sbjct: 239 AGYQLDGPLVDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSIN 298

Query: 262 DSGFHEGIISRYGLDSDV--ARIEILGQFPQQEVNNFIPHNYIEEAMSR-EAIDDLYAPL 318
                E         ++      +    F   +  +FI +  +++        +    P 
Sbjct: 299 LDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYPTLQKNNEIVSLEELEGRPC 358

Query: 319 IMGCDIAGEGGDKTV----VVFRRGNIIEHIFDWSAKLIQETNQEGCP 362
            +G D++    D T          G +      W  K   E + E  P
Sbjct: 359 TIGYDLSET-EDFTAACATFALDNGKVAVLSHSWIPKHKVEYSNEKIP 405


>gi|262172263|ref|ZP_06039941.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus MB-451]
 gi|261893339|gb|EEY39325.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus MB-451]
          Length = 416

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/318 (12%), Positives = 78/318 (24%), Gaps = 50/318 (15%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           +      FS+P + Q E +                       SA  G GKT   A   L 
Sbjct: 16  EAIEEMGFSRPTQVQAEAIPQALDG------------RDVLASAPTGTGKTAAFAIPALQ 63

Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
            +   P        I+ +  +         AE ++ L+     + F +     +      
Sbjct: 64  YLLDFPRRKAGPARILILTPTRELAMQV--AEQAQALAKNTRLNIFTITGGVQYQEHADI 121

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
               Q +        +                       +  DEA    D+     +   
Sbjct: 122 LATTQDI--------VVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173

Query: 216 TELNPNRFWIMTSNTRRLN------------GWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
           +     R   +  +                    +     P  + K+        + +  
Sbjct: 174 SAECRWRKQTLLFSATLEGRGVEGFTADLLKNPAHIDAEPPRRERKKISQWYHRADDMPH 233

Query: 264 --GFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AID 312
                + I++     S V     E L     +     IP  +I  E    R         
Sbjct: 234 KVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAITRFR 293

Query: 313 DLYAPLIMGCDIAGEGGD 330
           +    +++  D+A  G D
Sbjct: 294 EGSVNILLATDVAARGID 311


>gi|217973759|ref|YP_002358510.1| Terminase [Shewanella baltica OS223]
 gi|217498894|gb|ACK47087.1| Terminase [Shewanella baltica OS223]
          Length = 581

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/344 (10%), Positives = 85/344 (24%), Gaps = 58/344 (16%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
            WQ   + ++        +  +   F+   + +G+G GK+ L   + L+ +         
Sbjct: 91  DWQAFIVGSLF----GWKDADHTRRFRMCYVESGKGSGKSPLAGGIGLYGLVADGEASAE 146

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I   A  + Q    L+ +        P         LS             ++    K+ 
Sbjct: 147 IYAAATKKDQAM-VLFRDAVSMFRQSP--------QLSARLKPSGTAQNVWNLAYLEKNS 197

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                 +     D               DE     +     ++   T+        M +N
Sbjct: 198 F-----FRPISSDNGQS--GPRPHMALIDEVHEHKNNNVVEMMRAGTKGRKQALIFMITN 250

Query: 230 ----------------------TRRLNGWFYDIFNIPL------EDWKRYQIDTRTVEGI 261
                                 T+  + +F  I ++        ++    + +       
Sbjct: 251 SGHDRTSVCYSYHEYGKAICVGTKEDDSFFAFICSLDEGDDPINDESCWQKANPSLGHTF 310

Query: 262 DSGFHEG---IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
              +                + R     Q+            + +     +  + +    
Sbjct: 311 THKYLREQVTQAKGMPAKESIVRRLNFCQWVDSASPWLSADTWTDCEDDFDISELVGEEC 370

Query: 319 IMGCDIAGEGGDKTVVVFR--RGNIIEHIFDWSAKLIQETNQEG 360
             G D++G   D T +     R   +  +  W+ K      +  
Sbjct: 371 YGGLDLSGT-RDLTALALYFPRVKTLL-VEFWTPKDTLLDRERT 412


>gi|167462274|ref|ZP_02327363.1| hypothetical protein Plarl_06915 [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322382817|ref|ZP_08056660.1| phage-related terminase-like protein large subunit [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321153200|gb|EFX45647.1| phage-related terminase-like protein large subunit [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 423

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/279 (11%), Positives = 74/279 (26%), Gaps = 55/279 (19%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           +  G G  K+     + L L       + + +       +++ ++ + + ++ L      
Sbjct: 24  LVGGYGSSKSYHV-ALKLVLKLLNEKRTALVVREVYDTHRDSTYSLLEEIITDLGLDGTV 82

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
              +  +             +   +    I       ++P      H  +   V+ +E S
Sbjct: 83  RPITSPM------------QIRFPNGSKIIFKGM---DKPAKLKSIH--NVSIVWIEECS 125

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-------------------- 241
                  K +LG       +   ++++N    + W +  F                    
Sbjct: 126 EVKYEGFKELLGRLRHPALDLHMLLSTNPVGEDNWTFKHFFKDELKNHIVLEDTDLYEKR 185

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF------------P 289
            I   D   +         +   +   +      D D+ RI   G+F             
Sbjct: 186 TIVKNDTFYHHSTAEDNLFLPKSYVAQLDELKAYDPDLYRIAREGRFGVNGVRVLPQFEV 245

Query: 290 QQEVNNFIPHNYIEEAMSREA-----IDDLYAPLIMGCD 323
                     + I + + R        D   A + +  D
Sbjct: 246 ASHEEVIEAISRIRKPIERTGMDFGFEDSYNAVVRLAVD 284


>gi|253579099|ref|ZP_04856370.1| DNA/RNA helicase superfamily II protein [Ruminococcus sp.
           5_1_39B_FAA]
 gi|251850042|gb|EES78001.1| DNA/RNA helicase superfamily II protein [Ruminococcus sp.
           5_1_39BFAA]
          Length = 1053

 Score = 50.3 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 59/185 (31%), Gaps = 28/185 (15%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P+ +Q E ++ +               ++  +SA  G+GKT + A+         P   +
Sbjct: 328 PYAYQQEILDNLAA------EREVYGHYRNLVSAATGVGKTIIAAFDYKAFKEKNPRARL 381

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + +A+     K  L   + K+  +L   ++ E+      P+      +       +K   
Sbjct: 382 LFVAHR----KEILEQSIQKFQEVLNDFNFGELYVDGYKPTDIEHLFISIQSFNSAKLSQ 437

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
            T +                +   +  DE         + +        P     +T+  
Sbjct: 438 WTSK---------------DYYDFIIVDEFHHAAADSYQEL---LAYYEPKILLGLTATP 479

Query: 231 RRLNG 235
            R++G
Sbjct: 480 DRMDG 484


>gi|307290792|ref|ZP_07570686.1| hypothetical protein HMPREF9509_01090 [Enterococcus faecalis
           TX0411]
 gi|306498101|gb|EFM67624.1| hypothetical protein HMPREF9509_01090 [Enterococcus faecalis
           TX0411]
 gi|315163698|gb|EFU07715.1| conserved hypothetical protein [Enterococcus faecalis TX1302]
          Length = 577

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/374 (10%), Positives = 88/374 (23%), Gaps = 71/374 (18%)

Query: 6   STDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVH 65
           ST +   Q L             K +    + W              +WQ         +
Sbjct: 64  STGEWSGQPLELEDWQ-------KFYFSNIYGWQKWS---------DKWQRNVRVIRKSY 107

Query: 66  CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNT 123
                 N                GK+ +    +L+ +      G    C+A    Q +N 
Sbjct: 108 LQVPKKN----------------GKSLMEGAPILYGMYGEGVKGAQFYCLAADFDQAQNV 151

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR--------- 174
                +   +         +       +       E      +    ++ R         
Sbjct: 152 ANPLATVIENDNDLLDGTRVYRKEKKVTTISYAFFEDDFKYQNNLRVLSKREKVDGKNTY 211

Query: 175 -TYSEERPDTFVGPHNT----------HGMAVFNDEASG----TPDIINKSILGFFTELN 219
              ++E  +                    + +    A          I +       E N
Sbjct: 212 IVVADEVHEWEDTSRYDGLKSGQAAQPEPLFLVCSTAGKNSGALGVQIYQDSKHILEEDN 271

Query: 220 PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279
            + ++IM     +   W  +     +         +  +  +   F + + + +      
Sbjct: 272 DDDWFIMIYEPNKGYNWEDEKVWEMV---NPNLYVSFDITFLRGEFKDALRNPFRK--AE 326

Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFR-- 337
              + L  F     N +     I+  +  +  D     + +G D++    D T V     
Sbjct: 327 FLSKHLNVFVNYAEN-YFDKEQIDNCLVDDLGDITGEQVAIGIDLSRT-TDLTCVSINIP 384

Query: 338 ----RGNIIEHIFD 347
                G  I  I  
Sbjct: 385 TFNDEGESIIKIKQ 398


>gi|258620330|ref|ZP_05715368.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM573]
 gi|258624701|ref|ZP_05719635.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM603]
 gi|258582988|gb|EEW07803.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM603]
 gi|258587209|gb|EEW11920.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM573]
          Length = 416

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/318 (12%), Positives = 78/318 (24%), Gaps = 50/318 (15%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           +      FS+P + Q E +                       SA  G GKT   A   L 
Sbjct: 16  EAIEEMGFSRPTQVQAEAIPQALDG------------RDVLASAPTGTGKTAAFAIPALQ 63

Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
            +   P        I+ +  +         AE ++ L+     + F +     +      
Sbjct: 64  YLLDFPRRKAGPARILILTPTRELAMQV--AEQAQALAKNTRLNIFTITGGVQYQEHADI 121

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
               Q +        +                       +  DEA    D+     +   
Sbjct: 122 LATTQDI--------VVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173

Query: 216 TELNPNRFWIMTSNTRRLN------------GWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
           +     R   +  +                    +     P  + K+        + +  
Sbjct: 174 SAECRWRKQTLLFSATLEGRGVEGFTADLLKNPAHIDAEPPRRERKKISQWYHRADDMPH 233

Query: 264 --GFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AID 312
                + I++     S V     E L     +     IP  +I  E    R         
Sbjct: 234 KVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAITRFR 293

Query: 313 DLYAPLIMGCDIAGEGGD 330
           +    +++  D+A  G D
Sbjct: 294 EGSVNILLATDVAARGID 311


>gi|293369707|ref|ZP_06616283.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
 gi|292635129|gb|EFF53645.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
          Length = 541

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 83/301 (27%), Gaps = 31/301 (10%)

Query: 54  WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSII 111
           WQ   +  +             T     +S  R  GKT L A + L+ +      G  ++
Sbjct: 73  WQQFIIANILGFYWKGTGTRRFTSSYIEVS--RKQGKTALAAALCLYYLIADGEDGAEVL 130

Query: 112 CIANSETQLKNTL---------WAEVSKWLSMLPHRHWFEMQSLSLH-PSGWYAELLEQS 161
             ANS+ Q K                 K+L+       F+  +  L   +   ++L   +
Sbjct: 131 LAANSKEQAKIAFDMCSKFSKGLDTKGKYLTAYRADILFKATNSKLKVLAADDSKLDGFN 190

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE---- 217
                       +T               +        A     +    +     E    
Sbjct: 191 ASFGLLDEYHAAKTSKVRDVIKSSMGMRENPHLCTITTAGFDKTLPCYQLRTVAIEVLNE 250

Query: 218 -LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRY--- 273
             + +  +I   +    + W          +    ++       + S + +G + +    
Sbjct: 251 LKSDDEMFIAIYSLDADDDW--------RSEKNWMKVAPNLNITVTSKYIKGQVQQAINN 302

Query: 274 GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTV 333
             D    R + L Q+           + I+   + +       P  +G D+A    D T 
Sbjct: 303 PSDEVGVRTKTLNQWCDSATVWLSDESIIKCTQAVDLSKFRGLPCYVGVDLAAT-SDLTA 361

Query: 334 V 334
           V
Sbjct: 362 V 362


>gi|283470731|emb|CAQ49942.1| putative phage terminase, large subunit [Staphylococcus aureus
           subsp. aureus ST398]
          Length = 563

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 47/348 (13%), Positives = 90/348 (25%), Gaps = 60/348 (17%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
             WQ   + ++    H           +  I  GR  GKTT  + +  + +S     G  
Sbjct: 81  QPWQHFIIGSLFGWVHK--ETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAE 138

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I  +AN   Q +  L+ E    +   P                   +L +    +  + +
Sbjct: 139 IHLLANVMKQAR-ILFDESKAMIKASP-------------------KLDKNFRTLRDEIH 178

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTS 228
                +    +          +      DE     D  +   I              +T+
Sbjct: 179 YDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITT 238

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRT---------------------------VEGI 261
              +L+G   D+     +   +   D RT                           V   
Sbjct: 239 AGYQLDGPLVDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSIN 298

Query: 262 DSGFHEGIISRYGLDSDV--ARIEILGQFPQQEVNNFIPHNYIEEAMSR-EAIDDLYAPL 318
                E         ++      +    F   +  +FI +  +++        +    P 
Sbjct: 299 LDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYPTLQKNNEIVSLEELEGRPC 358

Query: 319 IMGCDIAGEGGDKTV----VVFRRGNIIEHIFDWSAKLIQETNQEGCP 362
            +G D++    D T          G +      W  K   E + E  P
Sbjct: 359 TIGYDLSET-EDFTAACATFALDNGKVAVLTHSWIPKHKVEYSNEKIP 405


>gi|320156410|ref|YP_004188789.1| phage terminase large subunit [Vibrio vulnificus MO6-24/O]
 gi|319931722|gb|ADV86586.1| phage terminase large subunit [Vibrio vulnificus MO6-24/O]
          Length = 586

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/350 (11%), Positives = 90/350 (25%), Gaps = 63/350 (18%)

Query: 22  AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81
           A+ V+ F  F+        KGK      +   WQ   + ++    + +            
Sbjct: 77  AQRVIDFYKFIRHT-----KGKLARTVMKLMPWQQFCVGSIVGWVYKDTGFRRFKQANIW 131

Query: 82  ISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
           ++  R  GK+TL + + L+ +      G  I  IA  + Q K  ++ +  + LSM   + 
Sbjct: 132 VA--RKNGKSTLASGLGLYFLIADGEVGAEIYSIAVKKDQAK-IVFDDAVRMLSMSELKE 188

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
              ++  S+     +A+ +                                +      DE
Sbjct: 189 VLTVKRDSITFDAEFAKFVPL--------------------ASDSNSLDGLNTHCFIADE 228

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTR---------------------------R 232
                D     ++   T           S                               
Sbjct: 229 LHSWKDRNLWGVMETSTGAREQPLAFSISTAGWILDGIGKELFDDGCTILENYGLEENVF 288

Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL---DSDVARIEILGQFP 289
              +  D  +   +     + +      +     E +  +      +      + L  + 
Sbjct: 289 TMNYTLDDGDKFNDRTCWIKANPCLGVSVKEEDIERLCRKAERMASERANFLTKRLNVWV 348

Query: 290 QQEVNNFIPHNYIEEAMSREAIDD--LYAPLIMGCDIAGEGGDKTVVVFR 337
                 ++  + + +     A  +       I+G D A      +V    
Sbjct: 349 NNAE-AWLNLDKLYKCADPNARLEDFEGRDCIIGVDFADYLDLTSVCYLF 397


>gi|283469600|emb|CAQ48811.1| putative phage terminase, large subunit [Staphylococcus aureus
           subsp. aureus ST398]
          Length = 563

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 47/348 (13%), Positives = 90/348 (25%), Gaps = 60/348 (17%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
             WQ   + ++    H           +  I  GR  GKTT  + +  + +S     G  
Sbjct: 81  QPWQHFIIGSLFGWVHK--ETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAE 138

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I  +AN   Q +  L+ E    +   P                   +L +    +  + +
Sbjct: 139 IHLLANVMKQAR-ILFDESKAMIKASP-------------------KLDKNFRTLRDEIH 178

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTS 228
                +    +          +      DE     D  +   I              +T+
Sbjct: 179 YDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITT 238

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRT---------------------------VEGI 261
              +L+G   D+     +   +   D RT                           V   
Sbjct: 239 AGYQLDGPLVDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSIN 298

Query: 262 DSGFHEGIISRYGLDSDV--ARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPL 318
                E         ++      +    F   +  +FI +  +++        +    P 
Sbjct: 299 LDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYPTLQKNNEIISLEELEGRPC 358

Query: 319 IMGCDIAGEGGDKTV----VVFRRGNIIEHIFDWSAKLIQETNQEGCP 362
            +G D++    D T          G +      W  K   E + E  P
Sbjct: 359 TIGYDLSET-EDFTAACATFALDNGKVAVLTHSWIPKHKVEYSNEKIP 405


>gi|255652557|ref|ZP_05399459.1| hypothetical protein CdifQCD_20411 [Clostridium difficile
           QCD-37x79]
          Length = 591

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 73/289 (25%), Gaps = 47/289 (16%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
           +   I A RG  K+ + A          P   I   A +++Q +             L  
Sbjct: 64  YAMLICA-RGFAKSWIAAVYACCRAVLYPNSKIGIAAFTKSQAE-------------LII 109

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
           R   E + +   P         +     SK       T      +            +  
Sbjct: 110 REKIEKELVKQSPMLAREIKKIEYNNKFSKVTFHNGSTIEAIVSN--EQSRGFRFNILIV 167

Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSN----TRRLNGWFY-----DIFNIPLEDW 248
           DE       I   IL  F  ++ N  +             N   Y        +   + +
Sbjct: 168 DEFRLVKKEIQDRILKPFLNVSRNLKFKKDGKYEDYPPEPNKELYLSSAWFRMHEAYDKF 227

Query: 249 KRYQIDTRT----------------VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292
           K Y  D                      +D    + +      D+    +E+   F  + 
Sbjct: 228 KLYVKDMVDGRDKFVLNCNYKLSLHHGILDKERADEMKREM--DAVSWIMEMESLFFGEN 285

Query: 293 VNNFIPHNYIEEAMS-REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGN 340
            +     +Y+    + +          I+    A  G  K  +  R+G 
Sbjct: 286 EDAIFKSSYVNPCRTLKNPFYPPTDLEILS---AKNGKVKCNLQKRKGE 331


>gi|126436464|ref|YP_001072155.1| hypothetical protein Mjls_3888 [Mycobacterium sp. JLS]
 gi|126236264|gb|ABN99664.1| protein of unknown function DUF264 [Mycobacterium sp. JLS]
          Length = 496

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 76/280 (27%), Gaps = 38/280 (13%)

Query: 79  KCAISAGRGIGKTTLNAWMM-LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
           +  ++     GK+ L + ++ +WL+S  P   +I  +  +   +    A   + ++  P 
Sbjct: 53  RLIVTMPPRTGKSVLTSQVLPVWLLSRDPDAEVIVKSYGDALAEEHSAA-ARRLIAENPA 111

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
               E+ +       W        M       + T    S    D  V            
Sbjct: 112 VVGIELAADKQAVGRWRVAGHRGGMLAGGILSSTTGFGASVLLVDDPVKG---------A 162

Query: 198 DEASGTP-----DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
            EA             K+ L        +   ++       +     +   P   W+   
Sbjct: 163 QEADSDAYRRRLTAEFKASLMTRLMPGASAIVVL--TRWHPDDLAGSLLAEPGSRWRCVN 220

Query: 253 IDTRTVEGIDSGFHEGI-----------------ISRYGLDSDVARIEILGQFPQQEVNN 295
           I   +  G+                           +  + S       LG  P      
Sbjct: 221 IPAISTAGVPDALGRERSGVAMTSAVGRTAEQFREIKSEVGSRAWAAMYLGT-PTTPEGG 279

Query: 296 FIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEG-GDKTVV 334
            I   +I+      A       +++G D A  G GD+T +
Sbjct: 280 LIKAAWIDT-WRLPAAPPGTVKIVVGVDPADSGEGDETGI 318


>gi|306827214|ref|ZP_07460502.1| PBSX family phage terminase [Streptococcus pyogenes ATCC 10782]
 gi|304430571|gb|EFM33592.1| PBSX family phage terminase [Streptococcus pyogenes ATCC 10782]
          Length = 435

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 73/269 (27%), Gaps = 23/269 (8%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
             ++  +   RG  K+   A   +  +   P  +++ I       K + + +     + L
Sbjct: 33  NFYRV-VKGSRGSKKSKTTALNFIVRLLKYPWANLLVIRRYSNTNKQSTYTDFKWACNQL 91

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
              H F+                   + + +    I  R   +E   T +          
Sbjct: 92  KVSHLFKFNES------------LPEITVKATGQKILFRGLDDELKITSITVDVGALCWA 139

Query: 196 FNDEASGTPDI-----INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NIPLED 247
           + +EA           + +SI G     +  +   +T N      W   +F        D
Sbjct: 140 WFEEAYQIETEDKFSTVVESIRGTLDVPDFFKQITVTFNPWSERHWLKRVFFDEETKRAD 199

Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
                   R  E +D          Y  +   ARI   G +   E   F     ++  + 
Sbjct: 200 TFSGTTTFRVNEWLDDVDKRRYEDLYKTNPRRARIVCDGDWGVAEGLVFDNFEVVDFDVE 259

Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
           +            G D        T++  
Sbjct: 260 KTIQRVKETS--AGMDFGFTQDPTTLICV 286


>gi|226949592|ref|YP_002804683.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
           A2 str. Kyoto]
 gi|226841691|gb|ACO84357.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
           A2 str. Kyoto]
          Length = 451

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 65/227 (28%), Gaps = 38/227 (16%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           +  G G  K+   A  ++ L       + + +      ++++ ++   + ++ +      
Sbjct: 25  LVGGYGSSKSYHVALKLI-LKLLEEKRTALVVREVYDTIRDSCFSLFDEIITEMELDDRI 83

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
           +  +  +             +   +    I       ++P         +   ++ +E S
Sbjct: 84  KCVTSPM------------QIRFPNGSKIIFKGM---DKPAKLKSI--NNVSIIWIEECS 126

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP----------------- 244
                  K +LG           I+++N    N W Y  F +                  
Sbjct: 127 EVKYAGFKELLGRLRHPTLELHMILSTNPVSKNNWCYKHFFMDTKKKIFILDDKELYKNR 186

Query: 245 ---LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
                +   +         +   + E +      D D+ RI   G+F
Sbjct: 187 IIIKNNTYYHHSLADDNLFLPKTYIEQLDELKTYDIDLYRIARRGRF 233


>gi|254418922|ref|ZP_05032646.1| conserved hypothetical protein [Brevundimonas sp. BAL3]
 gi|196185099|gb|EDX80075.1| conserved hypothetical protein [Brevundimonas sp. BAL3]
          Length = 694

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 43/309 (13%), Positives = 76/309 (24%), Gaps = 53/309 (17%)

Query: 83  SAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
             GRG GKT   A  +  +      G  +  I  +   ++  + A         P     
Sbjct: 263 LGGRGAGKTLAGASWIADMAERLGAGGRLALIGPTLHDVREVMIAG--------PSGVMS 314

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
             +   +   G       +      +              +           A + DE  
Sbjct: 315 LPRWTGVGGDGAVEWRGPEYQPSRRRLVFPNGAEAFVFSAEDPDSLRGPQFAAAWADEFC 374

Query: 202 GT--------------------PDIINKSILGF-----------FTELNPNRFWIMTSNT 230
                                 PD                      E + +   ++T+  
Sbjct: 375 AWRNGGETLALLRMGLRLRLPNPDSPAVDADAAQNGGVGAKVARLREPSDSPRLVVTTTP 434

Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290
           R                   +       + +  GF EG+   YG     A  E+ GQ  +
Sbjct: 435 RPT--RALKALRAEASCALTHATTRDNGDHLAPGFLEGLERLYGGTRRAA-QELEGQVVE 491

Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAP----LIMGCDI--AGEGGDKTVVVF--RRGNII 342
                      +  A     +     P    +++G D   +  GGD   +V   RRG   
Sbjct: 492 -PEGGLFTAEMMAAARGEAPVSVEARPVYERVVVGLDPTCSR-GGDACGIVAVGRRGETA 549

Query: 343 EHIFDWSAK 351
             + D S +
Sbjct: 550 WVLADRSMR 558


>gi|319950568|ref|ZP_08024477.1| hypothetical protein ES5_13328 [Dietzia cinnamea P4]
 gi|319435762|gb|EFV90973.1| hypothetical protein ES5_13328 [Dietzia cinnamea P4]
          Length = 536

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 51/170 (30%), Gaps = 10/170 (5%)

Query: 61  AVDVHCHSNVN---NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
            +        +    +   + +  I  G G GKT L   +      +R G  +  I  S 
Sbjct: 201 DIADALTREQSVLLRAVDALPRVEIRGGAGSGKTYLA--LEQARRLSRDGQRVALICYS- 257

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL-HPSGWYAELLEQSMGIDSKHYTITCRTY 176
             L + L    + W       +  E  +L +   +    +   +S            R  
Sbjct: 258 HGLASYLRRVTNGWKRRERPAYVGEFHALGVEWGAPAGPDERIRSAESVRWWEEELPRLM 317

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
           SE        P      AV  DEA    D   + ++G   +    R  I+
Sbjct: 318 SEL---ADGLPGGRRFDAVIVDEAQDFADSWWQPVIGALRDRENGRLMIV 364


>gi|318057426|ref|ZP_07976149.1| phage terminase, large subunit, PBSX family [Streptomyces sp.
           SA3_actG]
 gi|318075987|ref|ZP_07983319.1| phage terminase, large subunit, PBSX family [Streptomyces sp.
           SA3_actF]
          Length = 423

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/264 (11%), Positives = 68/264 (25%), Gaps = 39/264 (14%)

Query: 92  TLNAWMMLWLISTRPGMSII--------CIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
             +A + +W  + R G ++               + L   +   +      +      + 
Sbjct: 17  AASARINIWHGAIRSGKTVASLIAFLIAVSTAPASGLIVIVGRSLQTIERNVLDPLQDDA 76

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
               +     +      +  +    + +       E                + DEA+  
Sbjct: 77  LFGPIARQVVHTRGATVATILGRTVHLVGAADSRAEGR-----LRGLTACLAYVDEATLI 131

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF--NIPLEDWKRYQIDTRTVEGI 261
           P      +LG  +          T+N      W    F       D + +         +
Sbjct: 132 PRGFWNQLLGRLSVPGAKLM--ATTNPDNPGHWLRREFLDREGDLDLRSWHFTLDDNPAL 189

Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI-----PHNYIEE--AMSREA---- 310
           D+ +   + S Y       R  I G +  Q             + + +   + R      
Sbjct: 190 DAAYVTSLKSEYTG--LWYRRFIAGHWV-QSEGAIYETFDPARHVVRDLPRIDRWVCDAI 246

Query: 311 ---IDDLYAPLIMGCDIAGEGGDK 331
                + YA +++G      G D+
Sbjct: 247 DYGTVNPYADVLLGV-----GADR 265


>gi|297591009|ref|ZP_06949647.1| terminase large subunit [Staphylococcus aureus subsp. aureus MN8]
 gi|297575895|gb|EFH94611.1| terminase large subunit [Staphylococcus aureus subsp. aureus MN8]
          Length = 563

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 52/349 (14%), Positives = 94/349 (26%), Gaps = 62/349 (17%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTR--PGM 108
             WQ   + ++    H          F+ A I  GR  GKTT  + +  + +S     G 
Sbjct: 81  QPWQHFIIGSLFGWVHKETKLR---RFREALIFMGRKNGKTTTISGVANYGVSQDGENGA 137

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            I  +AN   Q +  L+ E    +   P                     L   +  D   
Sbjct: 138 EIHLLANVMKQAR-ILFDESKAMIKASPILSR-------------EFRPLRDEIHYDKTI 183

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMT 227
             I  +    ++ D        +      DE     D  +   I              +T
Sbjct: 184 SKIMPQASDSDKLD------GLNTHIGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYIT 237

Query: 228 SNTRRLNGWFYDIFNIPLE--------------------------DWKRYQIDTRTVEGI 261
           +   +L+G   D+  +  +                               + +      I
Sbjct: 238 TAGYQLDGPLVDMVEMGRDILDGVIEDERTFYYLASLDDDDDMNDSSNWIKANPNLGVSI 297

Query: 262 DSGFHEGIISRYGLDSDV---ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD-LYAP 317
           D    +    +             +    F   +  +FI +  +++     A+DD    P
Sbjct: 298 DLEEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYQTLQKNNDVIALDDLEGRP 357

Query: 318 LIMGCDIAGEGGDKTV----VVFRRGNIIEHIFDWSAKLIQETNQEGCP 362
             +G D++    D T          G +      W  K   E + E  P
Sbjct: 358 CTIGYDLSET-EDFTAACATFALDNGKVAVLSHSWIPKHKVEYSNEKIP 405


>gi|154251358|ref|YP_001412182.1| hypothetical protein Plav_0902 [Parvibaculum lavamentivorans DS-1]
 gi|154155308|gb|ABS62525.1| protein of unknown function DUF264 [Parvibaculum lavamentivorans
           DS-1]
          Length = 448

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 47/227 (20%), Gaps = 24/227 (10%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           +  GRG GKT   A  +   ++      I  I  +    +  +    S   ++       
Sbjct: 73  VLGGRGAGKTRAGAEWVAAEVAAGRAGRIALIGETLADAREVMIDGPSGLRTIAREDEKP 132

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
             +                                                 A + DE +
Sbjct: 133 RYEVTRKRL------------------LWPNGAVAYVFSAGEPESLRGPQFDAAWGDELA 174

Query: 202 GT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
                +     +          R   + + T R       +         R         
Sbjct: 175 KWRYAEAAWDMLQFGLRLGENPRQ--VMTTTPRPVPVLKRLIADKTTVTTRAATAANRAN 232

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306
             D  F   I    G  + + R E+  +      +       IE   
Sbjct: 233 LADGFFRAVIARYEG--TRLGRQELDAELIDDNPDALWKREAIERGR 277


>gi|209976840|ref|NP_044866.2| DNA packaging terminase subunit 1 [Murid herpesvirus 4]
 gi|6625593|gb|AAF19294.1|AF105037_26 29 [murid herpesvirus 4]
          Length = 679

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 65/203 (32%), Gaps = 18/203 (8%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
           +F+  +    ++++           I   R  GKT +   ++  L+++   + I  +A+ 
Sbjct: 191 KFLLDMLYFDNTDLLTFLQKSPAFLI--PRRHGKTWIVTAIISMLLTSVDDLHIGYVAHQ 248

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
           +  +   ++ E+S          WF  +++ +                          T 
Sbjct: 249 KH-VSLAVFLEISN-----ILLAWFPRKNIDIKKENGVILYSHPGKK---------SSTL 293

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT-RRLNG 235
                             +F DEA+        +ILGF  + +   F+I + N+  +   
Sbjct: 294 MCATCFNKNSIRGQTFNLLFVDEANFIKKEALPAILGFMLQKDAKIFFISSVNSGEKTTS 353

Query: 236 WFYDIFNIPLEDWKRYQIDTRTV 258
           + Y++ +   +            
Sbjct: 354 FLYNLKDANEKMVNVVSYVCSEH 376


>gi|49483696|ref|YP_040920.1| terminase large subunit [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257432452|ref|ZP_05608815.1| terminase large subunit [Staphylococcus aureus subsp. aureus E1410]
 gi|49241825|emb|CAG40517.1| terminase large subunit [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257283331|gb|EEV13463.1| terminase large subunit [Staphylococcus aureus subsp. aureus E1410]
          Length = 566

 Score = 49.9 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 52/349 (14%), Positives = 94/349 (26%), Gaps = 62/349 (17%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTR--PGM 108
             WQ   + ++    H          F+ A I  GR  GKTT  + +  + +S     G 
Sbjct: 84  QPWQHFIIGSLFGWVHKETKLR---RFREALIFMGRKNGKTTTISGVANYGVSQDGENGA 140

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            I  +AN   Q +  L+ E    +   P                     L   +  D   
Sbjct: 141 EIHLLANVMKQAR-ILFDESKAMIKASPILSR-------------EFRPLRDEIHYDKTI 186

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMT 227
             I  +    ++ D        +      DE     D  +   I              +T
Sbjct: 187 SKIMPQASDSDKLD------GLNTHIGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYIT 240

Query: 228 SNTRRLNGWFYDIFNIPLE--------------------------DWKRYQIDTRTVEGI 261
           +   +L+G   D+  +  +                               + +      I
Sbjct: 241 TAGYQLDGPLVDMVEMGRDILDGVIEDERTFYYLASLDDDDDMNDSSNWIKANPNLGVSI 300

Query: 262 DSGFHEGIISRYGLDSDV---ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD-LYAP 317
           D    +    +             +    F   +  +FI +  +++     A+DD    P
Sbjct: 301 DLEEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYQTLQKNNDVIALDDLEGRP 360

Query: 318 LIMGCDIAGEGGDKTV----VVFRRGNIIEHIFDWSAKLIQETNQEGCP 362
             +G D++    D T          G +      W  K   E + E  P
Sbjct: 361 CTIGYDLSET-EDFTAACATFALDNGKVAVLSHSWIPKHKVEYSNEKIP 408


>gi|326564604|gb|EGE14825.1| terminase [Moraxella catarrhalis 46P47B1]
          Length = 564

 Score = 49.9 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/306 (8%), Positives = 67/306 (21%), Gaps = 54/306 (17%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
             WQ+                      K  I   R  GK+ + A +  ++       G  
Sbjct: 83  EPWQIFACCLPFGWIKRATG--FRRYTKILIFVCRKNGKSAIAAGIGNYMFCADGEFGAE 140

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           +   A +E Q                  + ++ ++  + + +        + +       
Sbjct: 141 VYSGATTEKQAWEVFRPAKIMVERTKALKDFYSVEVNASNMARLADGSRFEPIIGKPGD- 199

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPNRFWIMTS 228
                               +       DE      + +  ++             ++T+
Sbjct: 200 -------------------GSSPSCAIIDEYHEHKNNDLYDTMETGMGAREQPIMLVITT 240

Query: 229 NTRRLNGWFYDIFNIPL----------------------EDWKRYQIDTRTVEGIDSGFH 266
               + G  + +                           +DW       +    +D    
Sbjct: 241 AGSSIGGACHQMVRDAEKMLDGVMDIPDLWAVLYGMDKDDDWTSEIALKKANPNMDISVS 300

Query: 267 EGIISRYGLD-------SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319
              +     D         + R + L ++   +        +               P  
Sbjct: 301 AEFLQARQRDAKMSAAKQAIFRTKHLNEWVGAKNAWLNMAKWANAPERLPLSALTGRPCF 360

Query: 320 MGCDIA 325
           +G D+A
Sbjct: 361 IGLDLA 366


>gi|282911089|ref|ZP_06318891.1| terminase large subunit [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282324784|gb|EFB55094.1| terminase large subunit [Staphylococcus aureus subsp. aureus
           WBG10049]
          Length = 566

 Score = 49.9 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 52/349 (14%), Positives = 93/349 (26%), Gaps = 62/349 (17%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTR--PGM 108
             WQ   + ++    H          F+ A I  GR  GKTT  + +  + +S     G 
Sbjct: 84  QPWQHFIIGSLFGWVHKETKLR---RFREALIFMGRKNGKTTTISGVANYGVSQDGENGA 140

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            I  +AN   Q +  L+ E    +   P                     L   +  D   
Sbjct: 141 EIHLLANVMKQAR-ILFDESKAMIKASPILSR-------------EFRPLRDEIHYDKTI 186

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMT 227
             I  +    ++ D               DE     D  +   I              +T
Sbjct: 187 SKIMPQASDSDKLDGLNTHMG------IFDEIHEFKDYKLISVIKNSRAARLQPLLIYIT 240

Query: 228 SNTRRLNGWFYDIFNIPLE--------------------------DWKRYQIDTRTVEGI 261
           +   +L+G   D+  +  +                               + +      I
Sbjct: 241 TAGYQLDGPLVDMVEMGRDILDGVIEDERTFYYLASLDDDDDMNDSSNWIKANPNLGVSI 300

Query: 262 DSGFHEGIISRYGLDSDV---ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD-LYAP 317
           D    +    +             +    F   +  +FI +  +++     A+DD    P
Sbjct: 301 DLEEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYQTLQKNNDVIALDDLEGRP 360

Query: 318 LIMGCDIAGEGGDKTV----VVFRRGNIIEHIFDWSAKLIQETNQEGCP 362
             +G D++    D T          G +      W  K   E + E  P
Sbjct: 361 CTIGYDLSET-EDFTAACATFALDNGKVAVLSHSWIPKHKVEYSNEKIP 408


>gi|312438081|gb|ADQ77152.1| terminase large subunit [Staphylococcus aureus subsp. aureus TCH60]
          Length = 563

 Score = 49.9 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 52/349 (14%), Positives = 93/349 (26%), Gaps = 62/349 (17%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTR--PGM 108
             WQ   + ++    H          F+ A I  GR  GKTT  + +  + +S     G 
Sbjct: 81  QPWQHFIIGSLFGWVHKETKLR---RFREALIFMGRKNGKTTTISGVANYGVSQDGENGA 137

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            I  +AN   Q +  L+ E    +   P                     L   +  D   
Sbjct: 138 EIHLLANVMKQAR-ILFDESKAMIKASPILSR-------------EFRPLRDEIHYDKTI 183

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMT 227
             I  +    ++ D               DE     D  +   I              +T
Sbjct: 184 SKIMPQASDSDKLDGLNTHMG------IFDEIHEFKDYKLISVIKNSRAARLQPLLIYIT 237

Query: 228 SNTRRLNGWFYDIFNIPLE--------------------------DWKRYQIDTRTVEGI 261
           +   +L+G   D+  +  +                               + +      I
Sbjct: 238 TAGYQLDGPLVDMVEMGRDILDGVIEDERTFYYLASLDDDDDMNDSSNWIKANPNLGVSI 297

Query: 262 DSGFHEGIISRYGLDSDV---ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD-LYAP 317
           D    +    +             +    F   +  +FI +  +++     A+DD    P
Sbjct: 298 DLEEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYQTLQKNNDVIALDDLEGRP 357

Query: 318 LIMGCDIAGEGGDKTV----VVFRRGNIIEHIFDWSAKLIQETNQEGCP 362
             +G D++    D T          G +      W  K   E + E  P
Sbjct: 358 CTIGYDLSET-EDFTAACATFALDNGKVAVLSHSWIPKHKVEYSNEKIP 405


>gi|290976692|ref|XP_002671073.1| predicted protein [Naegleria gruberi]
 gi|284084639|gb|EFC38329.1| predicted protein [Naegleria gruberi]
          Length = 998

 Score = 49.9 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 52/185 (28%), Gaps = 13/185 (7%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAG-----RGIGKTTLNAWMMLWLISTRPGMSI 110
            +  E +  H    V       F  ++  G      G+GKT   +  +  L  T+    +
Sbjct: 305 ADIFEKLYSHQQIGVKWLVERHFASSLKGGLLADDMGLGKTIQISSFIHGLFLTQKASRV 364

Query: 111 ICIANSETQLKNTLWAEVSKW----LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
           + I      +      E+ KW    +  +   H     S +      + +  E+      
Sbjct: 365 LVICP--NSVVGNWQKELEKWGGDQIKGVVIFHQVGKASSTNRKRQGFVKEFEKYAKQGG 422

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGM-AVFNDEASGTPDIINKSILGFFTELNPNRFWI 225
                T +T +               + ++  DEA    +  +         L     + 
Sbjct: 423 AVMLSTYQTIANHVEYLSKSFSGDKLLDSIIIDEAHKIKNK-DAKCSMALKTLGSASKFG 481

Query: 226 MTSNT 230
           +T   
Sbjct: 482 LTGTP 486


>gi|198424005|ref|XP_002119445.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
          Length = 2129

 Score = 49.9 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 51/182 (28%), Gaps = 25/182 (13%)

Query: 40   IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99
             K + + +FS  +  Q +    +  H                I A  G GKT      + 
Sbjct: 1259 EKFESVYNFSHFNPIQTQIFHCIYHHDT-----------NVLIGAPTGSGKTVAAELAIF 1307

Query: 100  WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159
             ++ T+PG   + +A  +  ++  +      W   L H+   ++  L+   +     +  
Sbjct: 1308 RMLRTQPGAKAVYVAPLKALVRERM----KDWEKRLKHKLGLKLVELTGDIAPDMRAVAR 1363

Query: 160  QSMGIDSKHYTITCRTYSEERPDTFVGPHN--THGMAVFNDEASGTPDIINKSILGFFTE 217
              + I +            +                 +  DE           +    + 
Sbjct: 1364 ADVIITTPEKW--------DGVSRSWNTRGYVRKVSLLIIDEIHLLGQDRGPVLEVIVSR 1415

Query: 218  LN 219
             N
Sbjct: 1416 TN 1417


>gi|228966905|ref|ZP_04127946.1| Prophage LambdaBa02, terminase, large subunit [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228792800|gb|EEM40361.1| Prophage LambdaBa02, terminase, large subunit [Bacillus
           thuringiensis serovar sotto str. T04001]
          Length = 555

 Score = 49.6 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 64/401 (15%), Positives = 116/401 (28%), Gaps = 70/401 (17%)

Query: 3   RLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAV 62
           R ++  +K   E    +   +       F+   F    KG   +   QP  WQ   + ++
Sbjct: 26  RHLNDLKKQGTEEFPYIFDEDLAHRPIKFIE-KFCRPSKGNFKQLILQP--WQHFVLGSL 82

Query: 63  DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQL 120
               H              +  GR  GKTT+ + +  + +S     G  I  +ANS  Q 
Sbjct: 83  FGWVHKETRLRRFKEGLIFV--GRKNGKTTIISGVANYGVSKDGEKGADIPLLANSMKQA 140

Query: 121 KNTLWAEVSKWLSMLP-HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
           +  L+ E    +   P  +  F     ++H    ++++                      
Sbjct: 141 R-LLFDESKAMIKASPLLKKHFRTLRDAIHYDKTFSKIEP-------------------- 179

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN---------- 229
           +          +      DE     D    S++            I  +           
Sbjct: 180 QASDSEKLDGLNTHIGIFDEIHEYKDYKLISVIKNSRGARDQPLLIYITTAGYQLDGPLV 239

Query: 230 ------TRRLNGWFYD----IFNIPLEDWKRYQIDTRT---VEGID-----SGFHEGIIS 271
                 T  LNG F D     F   L+D K +++          +D     S   E    
Sbjct: 240 NYYEQGTDVLNGVFDDDRTFYFLAELDDPKEFEMPEMWVKANPNMDVSIKLSDMIEDWKK 299

Query: 272 RYGLDSDV--ARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLIMGCDIAGEG 328
                S+      +    F      +F+ +  I++    R+  D      I G D++ + 
Sbjct: 300 DKRTPSERNDFITKRFNMFVNNNEQSFLDYEIIKKNNKVRDINDFTGKSCIGGFDLS-DS 358

Query: 329 GDKTVVV-----FRRGNIIEHIFDW--SAKLIQETNQEGCP 362
            D T           G +      W    K++ +   E  P
Sbjct: 359 EDFTSACLEFPIIETGEVFVFSHSWVPEKKVLMD--NEKIP 397


>gi|77462906|ref|YP_352410.1| putative terminase large subunit / phage terminase [Rhodobacter
           sphaeroides 2.4.1]
 gi|77387324|gb|ABA78509.1| putative terminase large subunit / phage terminase [Rhodobacter
           sphaeroides 2.4.1]
          Length = 510

 Score = 49.6 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/317 (11%), Positives = 82/317 (25%), Gaps = 51/317 (16%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS--TRPGMSI 110
            WQ   + A+    H + +    T+F       RG  KT+L A + L       R     
Sbjct: 23  PWQERIVRAIYGPRHPDGSRIVKTVFLLV---PRGNRKTSLAAALALLHTLGPERVPAGQ 79

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           +  A  + +     + E +  +          + +  ++ +               K   
Sbjct: 80  VIFAACDREQAGIGFREAANIIRA----DKRLVAATRIYDA----------HNSAKKIVF 125

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP-DIINKSILGFFTELNPNRFWIMTSN 229
                            H         DE        + +++     ++  +   I T+ 
Sbjct: 126 RAEDVTLSAISSDGGAQHGRTPAFTLIDELHAWKGRDLWEALKSGTAKVADSLTVIATTA 185

Query: 230 TRRLNGWFYDIFNI----------------------PLEDWKRYQIDTRTVEGIDSGF-- 265
            R  +    + +                        P +DW       +   G+  GF  
Sbjct: 186 GRGADTVAAEQYAYALAVARGEIVNPAFLPILFAPEPGDDWTDEATWHKVNPGLRHGFPS 245

Query: 266 ------HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA-MSREAIDDLYAPL 318
                           D+   R   L ++     +     +  +    + +  +    P 
Sbjct: 246 LEGLRTLAKEAEGRPSDAYAFRQFNLNEWMANSRDPLFDFDTYDARRFAEDLDELEGLPC 305

Query: 319 IMGCDIAGEGGDKTVVV 335
            +G D++  G    VV 
Sbjct: 306 WIGVDLSISGDLSAVVA 322


>gi|51518058|ref|YP_067987.1| BDRF1 [Macacine herpesvirus 4]
 gi|18025509|gb|AAK95453.1| BDRF1 [Macacine herpesvirus 4]
          Length = 690

 Score = 49.6 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 56/189 (29%), Gaps = 15/189 (7%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GKT +   ++  +IS    + I  +A+ +      ++ E+   L+           
Sbjct: 227 PRRHGKTWIVVAIISLIISNLSNVQIGYVAHQKHVAS-AVFTEIIDTLAKN--------- 276

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                      E+ +++  I  +H      T                   +F DEA+   
Sbjct: 277 -----FDAKRVEVNKETSTITFRHSGKISSTVMCATCFNKNSIRGQTFHLLFVDEANFIK 331

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264
                +ILGF  + +    +I + N+      F        E               D  
Sbjct: 332 KEALPAILGFMLQKDAKIIFISSVNSADQATSFLYKLKDAQERLLNVVSYVCQEHRQDFD 391

Query: 265 FHEGIISRY 273
             + ++S  
Sbjct: 392 MQDSMVSCP 400


>gi|195436432|ref|XP_002066172.1| GK22219 [Drosophila willistoni]
 gi|194162257|gb|EDW77158.1| GK22219 [Drosophila willistoni]
          Length = 1284

 Score = 49.6 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 42/157 (26%), Gaps = 7/157 (4%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              +    G+GKT + A +M       P   II +A +   +      +++    ++P  
Sbjct: 80  NTLVVLPTGLGKTFIAAVLMYNYYRWYPKGKIIFMAPTRPLVSQ----QIAACQKIMPFT 135

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               ++     P     EL        +    +        + D            +  D
Sbjct: 136 DQDTVELTGRLPRVKRMELWRTKRVFFATPQVVHSDMLD--QADQSHSFPFGSVKLLVVD 193

Query: 199 EAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
           EA           +       NP    +  S T    
Sbjct: 194 EAHRAKGRYAYTQVTESLMAHNPQFRMLALSATPGRT 230


>gi|322507236|gb|ADX02690.1| Putative phage terminase [Acinetobacter baumannii 1656-2]
          Length = 378

 Score = 49.6 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 60/225 (26%), Gaps = 32/225 (14%)

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A +  Q+++  +  + +          F+             E  ++      + Y  
Sbjct: 3   YFAPTYPQIRDIFFPTIEEV--------AFDWG-----LKTKVYETNKEVDIYYGRQYRT 49

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDE----ASGTPDIINKSILGFFT-ELNPNRFWIM 226
           T    S E+P T              DE    A        + I+     +       I 
Sbjct: 50  TIICRSMEKPAT---IVGFKIGHALIDELDVMAKVKAQQAWRKIIARMRYKQAGLLNGID 106

Query: 227 TSNTRRLNGWFYDIF-------NIPLEDWKRYQIDTRTVE-GIDSGFHEGIISRYGLDSD 278
            + T     + Y+ F           + +   Q  T   E  +   +   +   Y     
Sbjct: 107 VATTPEGFKFTYEQFVKEANKSEAKRKLYGMIQASTYDNEANLPDDYISSLYESY--PPQ 164

Query: 279 VARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
           +    + GQF         P ++       +       PL++G D
Sbjct: 165 LISAYLRGQFVNLTSGAVYP-DFDRVLNHTDEEIKKGEPLLIGMD 208


>gi|296393586|ref|YP_003658470.1| terminase [Segniliparus rotundus DSM 44985]
 gi|296180733|gb|ADG97639.1| Terminase [Segniliparus rotundus DSM 44985]
          Length = 498

 Score = 49.6 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 44/336 (13%), Positives = 79/336 (23%), Gaps = 64/336 (19%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS-AGRGIGKTTLNAWMMLWLISTRPGMSII 111
            WQ   +          V       F+  I+ A R  GK+ L   + LW    R  +   
Sbjct: 45  PWQEWLLTHALE-----VRPDGLPRFRTVIALAARQNGKSLLMIVLALW----RVYVKGG 95

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +  +   L N+              + W E   L+       +E+L        K   +
Sbjct: 96  VVVGTAQDLANS-------------EKAWGEAVELAEGTPELASEVLHVDKTNGKKSLRL 142

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEA--SGTPDIINKSILGFFTELNPNRFWIMTSN 229
                      +  G        +  DE     + D             +   + +  + 
Sbjct: 143 HSGAQYRIAAASRRGARGFTADLILLDELREHQSFDSWAAVTKTTMARPDAQVWCLSNAG 202

Query: 230 --------------------TRRLNGWFYDIFNIP-LEDWKRYQIDTRTVEGIDSGFHEG 268
                                        D       ED      +     G D      
Sbjct: 203 DHLSVVLAHLRNIAHRQLDWPDGKPDHVEDQAPDDEAEDDSVGIFEWSAPPGCDPKDRHA 262

Query: 269 IIS-----------------RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311
                                    + V   E+L Q+P        P    +      + 
Sbjct: 263 WAQANPALGVTITERAIASAYATDPAPVFAAEVLCQWPLTVTPGPFPPGSWDSTRDDNST 322

Query: 312 DDLYAPLIMGCDIAGEGGDKT-VVVFRRGNIIEHIF 346
               +P ++G D+A      T  +  RR + + H+ 
Sbjct: 323 IATDSPRVVGLDMAWNRSTVTLALAGRRDDGMAHVE 358


>gi|167634795|ref|ZP_02393114.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
           anthracis str. A0442]
 gi|170688565|ref|ZP_02879771.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
           anthracis str. A0465]
 gi|254686857|ref|ZP_05150715.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
           anthracis str. CNEVA-9066]
 gi|254744507|ref|ZP_05202186.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
           anthracis str. Kruger B]
 gi|167529869|gb|EDR92617.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
           anthracis str. A0442]
 gi|170667425|gb|EDT18182.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
           anthracis str. A0465]
          Length = 562

 Score = 49.6 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 60/205 (29%), Gaps = 26/205 (12%)

Query: 36  FPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95
           F    KGK +        WQ  F+ ++    H              ++  R  GK+TL++
Sbjct: 65  FCKHSKGKWVGKPIDLELWQKAFIGSLFGFIHKIDGTRKYREALLIVA--RKNGKSTLSS 122

Query: 96  WMMLWL--ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
            + L+L       G  +  +A  E Q K  +W+E  + +   P         LS      
Sbjct: 123 GICLYLQIADGEGGAEVYAVATKEKQAK-IVWSEAKRMVKKSPV--------LSKRIKAL 173

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK--SI 211
             EL         +       T            H         DE     D       +
Sbjct: 174 VKELNADFNDSTFQPVGSDSDTLDGLN------VHGAS-----LDEIHAWKDKNLYDVIV 222

Query: 212 LGFFTELNPNRFWIMTSNTRRLNGW 236
            G      P    I T+ T R + +
Sbjct: 223 DGTSAREQPLILMITTAGTVRESVY 247


>gi|120603805|ref|YP_968205.1| hypothetical protein Dvul_2767 [Desulfovibrio vulgaris DP4]
 gi|120564034|gb|ABM29778.1| protein of unknown function DUF264 [Desulfovibrio vulgaris DP4]
          Length = 599

 Score = 49.6 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 40/341 (11%), Positives = 76/341 (22%), Gaps = 67/341 (19%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P  +Q +       +    +  +     +  + A R IG T   A              I
Sbjct: 148 PALFQEKLHARYFDY-QRQLRAALTHRNRMLLKA-RQIGATWYFAQEAFENACLTGDNQI 205

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
              A            +V +   M      F++             ++  +    ++ + 
Sbjct: 206 FLSATKAQS-------QVFRNYIMQIAGEAFDIS-------LSGNPMVLHTAHGKAELHF 251

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTS 228
           ++  + S          H      V+ DE         + K   G        R    T 
Sbjct: 252 LSNSSRSA------QSYHGH----VYIDEFFWITKFKELFKVATGMAAHKRWRRTLFSTP 301

Query: 229 N-------TRRLNGWFYDIFNIPLEDWKRYQI---------------DTRTVEGIDSGFH 266
           +              F   F+ P        +                    E       
Sbjct: 302 SAITHEAYPLWSGETFQRRFSKPRPWPDAEAMRAGVLCPDTYFRNIITLADAEAGGCDLF 361

Query: 267 EGIISRYGLDSDVARIEILGQFPQQEVNNF---------IPHNYIEEAMSREAIDDLYAP 317
           +    +     +  R     +F       F         +     ++    +       P
Sbjct: 362 DVAQLKLEYTPEEFRQLFGCEFIDDTQGVFRLAQLEACMVDPADWQDVRQGDPHPVGNLP 421

Query: 318 LIMGCDIAGEGGDKTVVVF-----RRGNIIEHI--FDWSAK 351
           +  G D A  G D +         R G  I  I    W  +
Sbjct: 422 VWGGYDPARSGDDAS-FAVLLPDLRDGGGIRCIERHKWKGR 461


>gi|154298118|ref|XP_001549483.1| helicase [Botryotinia fuckeliana B05.10]
 gi|150858210|gb|EDN33402.1| helicase [Botryotinia fuckeliana B05.10]
          Length = 544

 Score = 49.6 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 57/240 (23%), Gaps = 25/240 (10%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P  WQ + ++ +D +                + A    GKT ++ + M  ++       +
Sbjct: 164 PDGWQRDVLDQLDANKS------------VFVVAPTSAGKTFISFYAMEQILRADNDGVL 211

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + +A ++  +         K   +      F      +         +  S G       
Sbjct: 212 VYVAPTKALVNQIAAEVQGKHYRICRFSKRFPQAGKGVWAIHTRDYRVNNSTGCQILVTV 271

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM---T 227
                     P             +  DE        +  +      L+P     +    
Sbjct: 272 PHILQIMLLSPTNAKSW-APRVKRIIFDEIHSIGQSEDGVVWEQLLLLSPCPIIALSATV 330

Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
            N  +   W  +       + K  +  TR            +             E LG 
Sbjct: 331 GNPEQFADWLGETQKANGSELKMIKHSTRYS---------DLRKFMYEPPKKFNFEGLGD 381


>gi|94988455|ref|YP_596556.1| terminase large subunit [Streptococcus phage 9429.2]
 gi|94541963|gb|ABF32012.1| terminase large subunit [Streptococcus phage 9429.2]
          Length = 431

 Score = 49.6 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 74/269 (27%), Gaps = 23/269 (8%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
             ++  +   RG  K+   A   +  +   P  +++ I       K + + +     + L
Sbjct: 29  NFYRV-VKGSRGSKKSKTTALNFIVRLLKYPWANLLVIRRYSNTNKQSTYTDFKWACNQL 87

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
              H F+                   + + +    I  R   +E   T +          
Sbjct: 88  KVTHLFKFNES------------LPEITVKATGQKILFRGLDDELKITSITVDVGALCWA 135

Query: 196 FNDEASGTPDI-----INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NIPLED 247
           + +EA           + +SI G     +  +   +T N      W   +F        D
Sbjct: 136 WFEEAYQIETEDKFSTVVESIRGSLDAPDFFKQITVTFNPWSERHWLKRVFFDEETKRAD 195

Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
                   R  E +D          Y  +   ARI   G++   E   F     ++  + 
Sbjct: 196 TFSGTTTFRVNEWLDDVDKRRYEDLYKTNPRRARIVCDGEWGVAEGLVFDNFEVVDFDVE 255

Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
           +            G D        T++  
Sbjct: 256 KTIQRVKETS--AGMDFGFTQDPTTLICV 282


>gi|255928222|gb|ACU41839.1| gp2 [Mycobacterium phage Puhltonio]
          Length = 595

 Score = 49.6 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 48/370 (12%), Positives = 86/370 (23%), Gaps = 51/370 (13%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + +  S   + +  +   L  A+   S K  V    P       L     P+      +E
Sbjct: 40  LEQAKSWSTEQKHAMLASLRAAKARASMK--VKYAHP-----AELAAALDPNYVVTPAIE 92

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +       +   +P      IS     GK+TL A               I +A     L
Sbjct: 93  LISTSIERVLT--SPKQINLEISMPPQEGKSTLAAVATPLRALQHNPHRKIILATYALDL 150

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
             T    + +W+          +  L +         L+ + G +               
Sbjct: 151 AETHSRTMREWIETYGTDVVDPLTGLPVEDKIG----LKLARGANKVTAWSVAGGRGGLV 206

Query: 181 PDT-FVGPHNTHGMAVFND-------EASGT-----PDIINKSILGFFTELNPNRFWIMT 227
                          +  D       EA         D    S+       + +   I T
Sbjct: 207 AAGIGSRLTGMPADLMIIDDPFKNMMEADSALYRKRVDEWFSSVARTRLAPDASIIMIQT 266

Query: 228 S-NTRRLNG---WFYDIFNIPLEDWKRYQIDTRT-------------VEGIDSGFHEGII 270
             +   L G               W+   I                    + +       
Sbjct: 267 RWHPEDLAGKVIAAERSLPRNERTWRVINIPAIAEKGIPDALKREPGTPMVSARDTPEAK 326

Query: 271 SRYGL-----DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
             +                 G  P+          + +     EA  + Y  ++ G D A
Sbjct: 327 RNFPKIRREVGERTWYALYQGS-PRNPEGGIFQQKWFDATRLPEAPLNPYTAVV-GIDPA 384

Query: 326 GEG-GDKTVV 334
             G GD+  +
Sbjct: 385 DSGEGDEAGI 394


>gi|255927526|gb|ACU41148.1| gp2 [Mycobacterium phage Colbert]
 gi|255928464|gb|ACU42079.1| gp2 [Mycobacterium phage UncleHowie]
 gi|282721382|gb|ADA83830.1| gp2 [Mycobacterium phage Fang]
          Length = 595

 Score = 49.6 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 48/370 (12%), Positives = 86/370 (23%), Gaps = 51/370 (13%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + +  S   + +  +   L  A+   S K  V    P       L     P+      +E
Sbjct: 40  LEQAKSWSTEQKHAMLASLRAAKARASMK--VKYAHP-----AELAAALDPNYVVTPAIE 92

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +       +   +P      IS     GK+TL A               I +A     L
Sbjct: 93  LISTSIERVLT--SPKQINLEISMPPQEGKSTLAAVATPLRALQHNPHRKIILATYALDL 150

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
             T    + +W+          +  L +         L+ + G +               
Sbjct: 151 AETHSRTMREWIETYGTDVVDPLTGLPVEDKIG----LKLARGANKVTAWSVAGGRGGLV 206

Query: 181 PDT-FVGPHNTHGMAVFND-------EASGT-----PDIINKSILGFFTELNPNRFWIMT 227
                          +  D       EA         D    S+       + +   I T
Sbjct: 207 AAGIGSRLTGMPADLMIIDDPFKNMMEADSALYRKRVDEWFSSVARTRLAPDASIIMIQT 266

Query: 228 S-NTRRLNG---WFYDIFNIPLEDWKRYQIDTRT-------------VEGIDSGFHEGII 270
             +   L G               W+   I                    + +       
Sbjct: 267 RWHPEDLAGKVIAAERSLPRNERTWRVINIPAIAEKGIPDALKREPGTPMVSARDTPEAK 326

Query: 271 SRYGL-----DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
             +                 G  P+          + +     EA  + Y  ++ G D A
Sbjct: 327 RNFPKIRREVGERTWYALYQGS-PRNPEGGIFQQKWFDATRLPEAPLNPYTAVV-GIDPA 384

Query: 326 GEG-GDKTVV 334
             G GD+  +
Sbjct: 385 DSGEGDEAGI 394


>gi|190150084|ref|YP_001968609.1| terminase large subunit [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307263417|ref|ZP_07545033.1| Phage D3 terminase-like protein [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189915215|gb|ACE61467.1| Putative terminase large subunit [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306871295|gb|EFN03023.1| Phage D3 terminase-like protein [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 556

 Score = 49.6 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 42/344 (12%), Positives = 77/344 (22%), Gaps = 54/344 (15%)

Query: 22  AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81
           +E V  F  F        +KG       +   WQ+     +    +              
Sbjct: 42  SEIVERFLKFSKV--CPHVKGHLRGKAIELSDWQVFLFANILGFKYRATGLRKYRSAYIQ 99

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           ++  R   K+T+ A +  W +    G   I  A         ++                
Sbjct: 100 VA--RKNAKSTVAAVLANWFLVMEKGQQDIYTAAVSRDQARIVF---------------- 141

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
                +   +     L ++      K       +              T+      DE  
Sbjct: 142 ---DDARQMAVLSKPLKKRVQIQQHKMIYPQNNSLMRPLAAKSSTIEGTNPSLAIVDEYH 198

Query: 202 GTPDIINKSILGFFTELNPNRFWIMT----SNTRRLNGWFYDIF---------------- 241
             PD    S L       P           SNT       YD                  
Sbjct: 199 LHPDNSVYSALELGQGARPEGLLFAITTAGSNTISACKQHYDYCCQILDGNEQNESIFIM 258

Query: 242 -------NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF--PQQE 292
                  N   +  +  + +    + I     E  I++           +  +F      
Sbjct: 259 IFELDDENEVDDPSQWIKANPNIGKSIPFQDFENTIAKARGIPSEWVEMLTKRFNVWCNG 318

Query: 293 VNNFIPHNYIEEAMSREAIDD-LYAPLIMGCDIAGEGGDKTVVV 335
              ++     +         D       MG D++    D T + 
Sbjct: 319 STPWLGEGNWKACERIYQETDLHGKECYMGLDLSST-NDLTSIC 361


>gi|15674984|ref|NP_269158.1| putative terminase, large subunit [Streptococcus phage 370.3]
 gi|13622131|gb|AAK33879.1| putative terminase, large subunit - phage associated [Streptococcus
           phage 370.3]
          Length = 429

 Score = 49.6 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 74/269 (27%), Gaps = 23/269 (8%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
             ++  +   RG  K+   A   +  +   P  +++ I       K + + +     + L
Sbjct: 27  NFYRV-VKGSRGSKKSKTTALNFIVRLLKYPWANLLVIRRYSNTNKQSTYTDFKWACNQL 85

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
              H F+                   + + +    I  R   +E   T +          
Sbjct: 86  KVTHLFKFNES------------LPEITVKATGQKILFRGLDDELKITSITVDVGALCWA 133

Query: 196 FNDEASGTPDI-----INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NIPLED 247
           + +EA           + +SI G     +  +   +T N      W   +F        D
Sbjct: 134 WFEEAYQIETEDKFSTVVESIRGSLDAPDFFKQITVTFNPWSERHWLKRVFFDEETKRAD 193

Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
                   R  E +D          Y  +   ARI   G++   E   F     ++  + 
Sbjct: 194 TFSGTTTFRVNEWLDDVDKRRYEDLYKTNPRRARIVCDGEWGVAEGLVFDNFEVVDFDVE 253

Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
           +            G D        T++  
Sbjct: 254 KTIQRVKETS--AGMDFGFTQDPTTLICV 280


>gi|328477377|gb|EGF47512.1| phage terminase [Lactobacillus rhamnosus MTCC 5462]
          Length = 465

 Score = 49.6 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 43/329 (13%), Positives = 77/329 (23%), Gaps = 62/329 (18%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             WQ+E  + +      ++       +       R  GK  + A   L+ +    G  ++
Sbjct: 40  QPWQVELAKHIFAVNQDHLWTHTKFGYSL----PRRNGKNEVVAIRELYAL--FDGEQVL 93

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A+  T    + W  + + L            S   + S          +         
Sbjct: 94  HTAHRTTTSH-SAWERLLRILDK----------SNVDYDSLKAVGRERIELPDTGGRVEF 142

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
             RT +                 +  DEA         ++    ++    +         
Sbjct: 143 RTRTSTGGL--------GEGFDLLIIDEAQEYTTDQESALKYVVSDSKNPQTIFC-GTPP 193

Query: 232 RL---------------------NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGII 270
                                   GW         +   R                  I 
Sbjct: 194 TPLSSGTVFVNLRNNVLEHKVANAGWAEWGVEDESDVHDRELWYRCNPSLGTIMTERSIQ 253

Query: 271 SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGD 330
              G D     I+ LG + +    + I  N   +   R     L   L +G      G D
Sbjct: 254 DEVGDDKIDFNIQRLGLWIKYNQKSAISANEWAQLKVRSL-PVLRGQLFVGI---KYGND 309

Query: 331 KTVVVFRRGNIIE---HIFDWSAKLIQET 356
                   GN +     +   S K+  ET
Sbjct: 310 --------GNNVSMSVAVRTLSKKVFVET 330


>gi|290891543|ref|ZP_06554600.1| hypothetical protein AWRIB429_1990 [Oenococcus oeni AWRIB429]
 gi|290478796|gb|EFD87463.1| hypothetical protein AWRIB429_1990 [Oenococcus oeni AWRIB429]
          Length = 636

 Score = 49.6 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 43/372 (11%), Positives = 101/372 (27%), Gaps = 57/372 (15%)

Query: 15  LHEMLMHAECVLSFKNFVMRF-----FPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSN 69
           L ++         F   V        F            ++   WQ   +  +       
Sbjct: 57  LQDLKRTGNEDFPFNYEVKHVKRLMKFSKMAPNVDTMEPTKLMEWQKFMLSLL---IGWR 113

Query: 70  VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129
                    +  IS GRG GKT + A +M +            + +     ++ L + ++
Sbjct: 114 NKEGGKRFSRAIISVGRGQGKTYMLAILMAYSFF---------VESRGLSNQDFLVSSIN 164

Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI--TCRTYSEERPDTFVGP 187
              +   + +   M ++    + W     +  + + +    +            +     
Sbjct: 165 AKQTGKLYGYLKSMINVLRTINPWKNIADKTDLSLQADKIIMRNHNNVIRPISHEAGQYD 224

Query: 188 HNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNT--------------- 230
            + H      DE       + I+K + G     N     I T+                 
Sbjct: 225 -SYHFTTAIFDEIGEVKSREKISKIVSGQVKVPNRQFVQISTAYPDPTVPFHEDEKMLQQ 283

Query: 231 -------RRLNGWFYDIFNIPLEDWKRYQIDT----------RTVEGIDSGFHEGIISRY 273
                  R  + +   I++    D                     + +  G  +   +  
Sbjct: 284 AMEQDFLRDADTYLCLIWSNDSLDETYKPETWVKSNPLLDLASEHDNLMQGLLDKRDNDV 343

Query: 274 GLDS-DVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKT 332
              +    + + L  +   ++++++    +E+A+  E          +G D +    D T
Sbjct: 344 LTGAVHDFQCKNLNMWLSSDIDSYLNLADVEKAIVPEFNI-YGQRCYVGVDYSMS-SDNT 401

Query: 333 VVVFRRGNIIEH 344
            V F    + E 
Sbjct: 402 AVAFVYPYVSEE 413


>gi|259908703|ref|YP_002649059.1| Putative phage terminase, large subunit [Erwinia pyrifoliae Ep1/96]
 gi|224964325|emb|CAX55834.1| Putative phage terminase, large subunit [Erwinia pyrifoliae Ep1/96]
          Length = 470

 Score = 49.2 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/288 (9%), Positives = 69/288 (23%), Gaps = 50/288 (17%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
           I +G+G GK+ L   + L+L+     P   +   A  + Q    L+ +    +   P   
Sbjct: 4   IESGKGSGKSPLAGGVGLYLLMADKEPRAEVYAAATKKDQAM-ILFRDAVTMVDQSP--- 59

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                            + +   G++  +          +   +  G           DE
Sbjct: 60  ------------ALAKRITKSGTGLNVWNLAFLQTGSFFKPISSDDGQSGPRPHGALIDE 107

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTR-RLNGWFYDIFNIPL------------- 245
                      ++   T+        + +N+        ++                   
Sbjct: 108 VHEHKTNAVVEMMRAGTKGRRQALMFLITNSGHDKTSVCFEYHEYGRKVAAGDLEDDSFF 167

Query: 246 --------------EDWKRYQIDTRTVEGIDSGFHEG---IISRYGLDSDVARIEILGQF 288
                         ++    + +    +   + +                + R     Q+
Sbjct: 168 SFICSLDEGDDPFKDETCWGKANPSLGQTFTAKYLREQVTQARGMPSKESIVRRLNFCQW 227

Query: 289 PQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
            +          ++      +  +        G D++G   D T +  
Sbjct: 228 VESADPWIDSDTWMNCEQDFDPDELAGEECYGGLDLSGS-RDLTALAL 274


>gi|78213224|ref|YP_382003.1| hypothetical protein Syncc9605_1699 [Synechococcus sp. CC9605]
 gi|78197683|gb|ABB35448.1| hypothetical protein Syncc9605_1699 [Synechococcus sp. CC9605]
          Length = 524

 Score = 49.2 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 77/273 (28%), Gaps = 45/273 (16%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ +    V      N            ++ GRG GK+ L  W++ +          + 
Sbjct: 13  PWQRKVAGLVQSVDELNT---------LVLAGGRGGGKSILLIWLIGFFA--------LV 55

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
              S   +       + + L+ L        Q +     G      ++   + +     T
Sbjct: 56  SGESFNAV------LIRRDLAGLSKLEDLLYQQVPTLMPGSKYFKAKRQWRLSNG---GT 106

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASG--TPDIINKSILGFF-TELNPNRFWIMTSN 229
            R    +  D F          +F DE      P ++ ++      T+      +I T+N
Sbjct: 107 LRLIHMDAGDAFNKIQGEDLSHIFWDELGQEADPQVVLRARSSMRTTDPTVVPKFIATAN 166

Query: 230 TRRLNGWFYDIFNIPLEDWK--------------RYQIDTRTVEGI--DSGFHEGIISRY 273
                 W+   + +                      +   R    +     + + + +  
Sbjct: 167 PLGPGSWWIRDYVVTKALPNRIFNCEFFGAQPAVWIKSTLRDNPYLSNPDQYEQELRASC 226

Query: 274 GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306
             D      E+LG++ Q     F     ++  M
Sbjct: 227 FGDESKIAAEVLGEWGQVTAGFFGSALSLDRNM 259


>gi|307275425|ref|ZP_07556567.1| phage uncharacterized protein [Enterococcus faecalis TX2134]
 gi|306507813|gb|EFM76941.1| phage uncharacterized protein [Enterococcus faecalis TX2134]
          Length = 418

 Score = 49.2 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 84/281 (29%), Gaps = 34/281 (12%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           + A RG  KTT  A  +  L+   P  +II +  ++T +      E+   ++ +    +F
Sbjct: 48  LLAHRGSFKTTTLAIAIALLMVLFPNKNIIFLRKTDTDV-----VEIILQVAKVLSSKYF 102

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
           +    +L+       L E +  ID+   T +  T        +      H   V  D+  
Sbjct: 103 KTLVFALYGVEL-VLLKETTTEIDTNLKTSSRGTSQLLGMGIYASLTGKHADIVITDDIV 161

Query: 202 GTPDIINKS--------ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253
              D ++++                N    +I T            +           + 
Sbjct: 162 NIKDRVSRAEREKTKLQYQELQNVKNRGGRFINTGTPWHKEDAISKM-------PNVKKF 214

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
           D      ID    + +  +  +   +       +      + F    YI+   +   I +
Sbjct: 215 DCYETGLIDKEQRKAL--QQSMTPSLFAANYELKHIADSESLFTAPTYID---NTNLIYN 269

Query: 314 LYAPLIMGCDIAGEGGDKTVVVFR----RGNIIEHIFDWSA 350
                +   D A  GGD T          G II     W  
Sbjct: 270 G----VAHIDAAYGGGDSTAFTIFKEQKDGTIIGFGKKWQK 306


>gi|322435572|ref|YP_004217784.1| Terminase [Acidobacterium sp. MP5ACTX9]
 gi|321163299|gb|ADW69004.1| Terminase [Acidobacterium sp. MP5ACTX9]
          Length = 555

 Score = 49.2 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 47/187 (25%), Gaps = 29/187 (15%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS-AGRGIGKTTLNAWMMLWLISTRPGMS- 109
             WQ   +       H          F+       R  GK+ L+A + LW++        
Sbjct: 80  QPWQCFLLACTFGWVHKTNGLR---RFRTVYLYVPRKNGKSFLSAVIGLWMLMFDGEQQA 136

Query: 110 -IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            + C A +  Q    ++    + +        F  ++L+                     
Sbjct: 137 EVYCGATTLPQA-EYVFKPAQQIIRKCAGLQTFGAKNLA--------------------S 175

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
             +   + S         P  +       DEA    + I   +    T +      +   
Sbjct: 176 AIVFPASESRMSAVIGQPPDGSSPSCALLDEAHEWSNDIL--MSTMQTGMGARLQPLTLV 233

Query: 229 NTRRLNG 235
            T     
Sbjct: 234 TTTAGYN 240


>gi|190573927|ref|YP_001971772.1| putative DNA packaging protein gp17 [Stenotrophomonas maltophilia
           K279a]
 gi|190011849|emb|CAQ45469.1| putative DNA packaging protein gp17 (terminase) [Stenotrophomonas
           maltophilia K279a]
          Length = 517

 Score = 49.2 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/365 (8%), Positives = 78/365 (21%), Gaps = 87/365 (23%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTI----------FKCAISAGRGIGKTTLNAWMML 99
               W+L  +  +       V      +             A+ + R  G TT      L
Sbjct: 17  GDRWWRLNNLYYITDKFGRRVQFKLNEVQADLDDNLHTLNLALKS-RQHGITTWACIRAL 75

Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159
            +   +       +A++         ++V      LP        ++         E   
Sbjct: 76  DMALFKKNTKAGVVAHTAGDAAKFFRSKVLYAYDNLPDWLKKIRPAVRRDMRDGVLE--- 132

Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE----ASGTPDIINKSILGFF 215
                            +    +  V         +   E     +  P+   +   G  
Sbjct: 133 ---------------LANGSSIEVSVSHRGGTLTFLHISEYGPMCAMYPERAGEVASGAL 177

Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIPLE---------------DWKRYQIDTRTVEG 260
             +      ++ S      G FY+   + +E               D++ +         
Sbjct: 178 NAIASGNIVVIESTAYGAAGDFYERCQMAIELDRQIRAGTAKLTAMDYRFHFYPWFRDPI 237

Query: 261 IDSGFH----------------EGIISRYGLDSDVARIEILGQ----------------F 288
            +                      +      +     ++   +                F
Sbjct: 238 NELDPDGVTLTAEDEAYFAKVEAEMNYTLRPEQKAWYVKKAAEQRDKMKREHPSTPEEAF 297

Query: 289 PQQEVNNFIPHNYIEE---AMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR--GNIIE 343
                  +               +   +   P+    DI     D T + F +  G  ++
Sbjct: 298 QASTEGAYYGKEMASADSSGRITDLPINPQVPIHTFWDIGR--SDATSIWFMQENGPWLD 355

Query: 344 HIFDW 348
            +  +
Sbjct: 356 FVDFY 360


>gi|134038655|gb|ABO48409.1| DNA packaging terminase subunit 1 [Wood mouse herpesvirus]
 gi|262285074|gb|ACY41102.1| DNA packaging terminase subunit 1 [Wood mouse herpesvirus]
          Length = 679

 Score = 49.2 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 65/203 (32%), Gaps = 18/203 (8%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
           +F+  +    ++++           I   R  GKT +   ++  L+++   + I  +A+ 
Sbjct: 191 KFLLDMLYFDNTDLLTFLQKSPAFLI--PRRHGKTWIVTAIISMLLTSVDDLHIGYVAHQ 248

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
           +  +   ++ E+S          WF  +++ +                          T 
Sbjct: 249 KH-VSLAVFLEISN-----ILLTWFPRKNIDIKKENGVILYSHPGKK---------SSTL 293

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT-RRLNG 235
                             +F DEA+        +ILGF  + +   F+I + N+  +   
Sbjct: 294 MCATCFNKNSIRGQTFNLLFVDEANFIKKEALPAILGFMLQKDAKIFFISSVNSGEKTTS 353

Query: 236 WFYDIFNIPLEDWKRYQIDTRTV 258
           + Y++ +   +            
Sbjct: 354 FLYNLKDANEKMVNVVSYVCSEH 376


>gi|320532097|ref|ZP_08032978.1| hypothetical protein HMPREF9057_00846 [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320135702|gb|EFW27769.1| hypothetical protein HMPREF9057_00846 [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 370

 Score = 49.2 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 53/175 (30%), Gaps = 12/175 (6%)

Query: 60  EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
             ++    S  +          I+  RG+GKT +   +     S R    ++    +   
Sbjct: 21  RVIEEFLESLDDGPGAPGLLELITGARGVGKTVMLTAL---GDSARERGWVVIDETAREG 77

Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
           L + L AE ++ LS L  +    + SLSL           +        +    R  ++ 
Sbjct: 78  LMDRLAAEFTRQLSQLAGKERSRLTSLSLSTPLGGGSATLEHAPTPEPSWRQKARALTQW 137

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF---FTELNPNRFWIMTSNTR 231
             +     H T  +    DE    P    +++                +M    +
Sbjct: 138 LAE-----HGTGLLLTI-DEVHAIPREELRALSAEVQHLIREGAPIGLLMAGLPK 186


>gi|257088841|ref|ZP_05583202.1| predicted protein [Enterococcus faecalis CH188]
 gi|256997653|gb|EEU84173.1| predicted protein [Enterococcus faecalis CH188]
 gi|315160590|gb|EFU04607.1| phage uncharacterized protein [Enterococcus faecalis TX0645]
 gi|315579436|gb|EFU91627.1| phage uncharacterized protein [Enterococcus faecalis TX0630]
          Length = 418

 Score = 49.2 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 79/281 (28%), Gaps = 34/281 (12%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           + A RG  KTT  A  +  L+   P  +II +  ++T +      E+   ++ +    +F
Sbjct: 48  LLAHRGSFKTTTLAIAIALLMVLFPNKNIIFLRKTDTDV-----VEIILQVAKVLSSKYF 102

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
           +    +L+ +     L E +  ID+   T +  T        +      H   V  D+  
Sbjct: 103 KTLVFALY-NVELVLLKETTTEIDTNLKTSSRGTSQLLGMGIYASLTGKHADIVITDDIV 161

Query: 202 GTPDIINKS--------ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253
              D ++++                N    +I T            +           + 
Sbjct: 162 NIKDRVSRAEREKTKLQYQELQNVKNRAGRFINTGTPWHKEDAISKM-------PNVKKF 214

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
           D      ID    + +          A  E+       +  +        +  +      
Sbjct: 215 DCYETGLIDKEQRKALQQSMTPSLFAANYELK---HIADSESLFTAPTYTDNTNLIYNGV 271

Query: 314 LYAPLIMGCDIAGEGGDKTVVVFR----RGNIIEHIFDWSA 350
            +       D A  G D T          G II     W  
Sbjct: 272 AH------IDAAYGGDDSTAFTIFKEQKDGTIIGFGKKWQK 306


>gi|327189474|gb|EGE56634.1| putative terminase large subunit protein [Rhizobium etli CNPAF512]
          Length = 523

 Score = 49.2 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 64/267 (23%), Gaps = 29/267 (10%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
            +   R +G TT     ML        +    IA++   ++     ++      LP    
Sbjct: 55  VLLKARQLGLTTFIQIFMLDACVFNRDIRAGTIAHTLGDVQTIFRDKIKYPYDNLPEG-- 112

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
                  +  +       +  + + +        +       T    H +    +     
Sbjct: 113 -------IRNAVPVVRTNQTELLLANNSSIRVGTSLR---SGTLQYLHISEYGKL----C 158

Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL-----------EDWK 249
           +  PD   +   G    +   +   + S      G FY +                 D+K
Sbjct: 159 AKYPDKAREVRTGALNTVQAGQLVFVESTAEGQEGHFYSLCEDAQVKHRQALELTELDFK 218

Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA-MSR 308
            +                 IIS           E        +   ++    I+   M R
Sbjct: 219 FHFFPWWKEPHYAIAPEGVIISDAFAKYFRELAEQGIDLTAGQKAWYVKKAEIQLGDMKR 278

Query: 309 EAIDDLYAPLIMGCDIAGEGGDKTVVV 335
           E             + A    D+  + 
Sbjct: 279 EYPSTPAEAFEASVEGAYY-ADQMAIA 304


>gi|323947379|gb|EGB43385.1| phage terminase large [Escherichia coli H120]
          Length = 634

 Score = 49.2 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/276 (9%), Positives = 72/276 (26%), Gaps = 34/276 (12%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
           H +Q   M+A+                K        +GKT +   ++   I++ P    +
Sbjct: 52  HPFQRGMMDAITE-----------DRRKIVFKCSAQLGKTMILNGIIFHRIASNPTNIGV 100

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             +N           E++ W++    +    +++     +    +    ++   S     
Sbjct: 101 LQSNV---------RELNSWIAG---KVKPVLEATPELKAMITDKSDRNAVNNSSIIQLR 148

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD----IINKSILGFFTELNPNRFWIMT 227
                     ++           +  DE     +       +      T    +   ++ 
Sbjct: 149 NGSFMYFMSLNSPSHLRGKTLPLIILDEVDAADESDEGNPIQLAEQRATTFGEDARIVIA 208

Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI----DSGFHEGIISRYGLDSDVARIE 283
           S     +G     + +  +            + +    +  F    I+   L +    + 
Sbjct: 209 STPTARDGAINQQWELSDKRKYHVVCQHCGHKHVMEWSNVHFDWHTINGKSLPNPDTAVY 268

Query: 284 ILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319
                P+ E +          A       +  A +I
Sbjct: 269 RC---PECETDWTEGDRLRAVAKGEWVATEPNAEVI 301


>gi|120599287|ref|YP_963861.1| phage terminase [Shewanella sp. W3-18-1]
 gi|120559380|gb|ABM25307.1| phage Terminase [Shewanella sp. W3-18-1]
          Length = 581

 Score = 49.2 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/344 (10%), Positives = 88/344 (25%), Gaps = 58/344 (16%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
            WQ   + ++        +      F+   + +G+G GK+ L A + L+ +         
Sbjct: 91  DWQAFIVGSLF----GWKDADGTRRFRMCYVESGKGSGKSPLAAGIGLYGLVADGEASAE 146

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I   A  + Q    L+ +    ++  P                  + L +   G    + 
Sbjct: 147 IYAAATKKDQAM-ILFRDAVSMVNQSP---------------QLSSRLKKSGTGQSVWNL 190

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
               +        +  G           DE     +     ++   T+        M +N
Sbjct: 191 AYLAKNSFFRPISSDNGQSGPRPHMALIDEVHEHKNNNVVEMMRAGTKGRKQALIFMITN 250

Query: 230 ----------------------TRRLNGWFYDIFNIPL------EDWKRYQIDTRTVEGI 261
                                 T+  + +F  I ++        ++    + +       
Sbjct: 251 SGHDRTSVCYSYHEYGKAICAGTKEDDSFFAFICSLDEGDDPINDESCWQKANPSLGHTF 310

Query: 262 DSGFHEG---IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
              +                + R     Q+            +++     +  +      
Sbjct: 311 THKYLREQVTQAKGMPAKESIVRRLNFCQWVDSASPWLSADTWMDCEDDFDISELYGEEC 370

Query: 319 IMGCDIAGEGGDKT--VVVFRRGNIIEHIFDWSAKLIQETNQEG 360
             G D++G   D T   + F R   +  +  W+ K      +  
Sbjct: 371 YGGLDLSGT-RDLTSLALYFPRVKTLL-VEFWTPKDTLLDRERT 412


>gi|304360664|ref|YP_003856795.1| putative terminase large subunit [Clostridium phage phiCTP1]
 gi|302495523|gb|ADL40303.1| putative terminase large subunit [Clostridium phage phiCTP1]
          Length = 472

 Score = 49.2 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/281 (11%), Positives = 70/281 (24%), Gaps = 27/281 (9%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA-WMMLWLISTRPGMS 109
           P +W    ++ + V       +                GKT +     + W  +     +
Sbjct: 19  PFKWSPPSLKQLKVLSWWMQGSPYQDCDAIICDGAIRSGKTVIMVLSYVNWASANFTDET 78

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
               + +    +  +   + K L  L     + ++              ++S  + S  +
Sbjct: 79  FAICSKTIGAFRRNVLVPLKKMLIDLG----YIIEDHRADNLITVIYKDDKSGKLISNDF 134

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
            +       +   +           VF DE +  P+          +      ++    N
Sbjct: 135 YVFG----GKDEASQDLIQGITLAGVFFDEVALMPESFVSQATARCSVDGSKLWFNC--N 188

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDT--RTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
                 WFY  +    +     ++         +     +    +Y       +  ILGQ
Sbjct: 189 PEGPFHWFYVKYIKKAKRRNALRLHFMMDDNPSLTPRILDRYKKQYSG--VFYKRFILGQ 246

Query: 288 FPQQEVNNFIPHNYIEEAMSREAIDDL-----YAPLIMGCD 323
           +  Q                R           Y    + CD
Sbjct: 247 WV-QAEGIVYSM------FDRNVNVVPTKTRNYEAFYVSCD 280


>gi|300122655|emb|CBK23222.2| unnamed protein product [Blastocystis hominis]
          Length = 422

 Score = 49.2 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 49/181 (27%), Gaps = 11/181 (6%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR-GIGKTTLNAWMMLWLISTRPGMSIICI 113
           Q    +       + +   N      AI  G  G GKTT+ + +++  +  R   S+   
Sbjct: 22  QKLIKQCNAEQQQAILMCFNSND--IAILRGYPGTGKTTVISVIVILCVLLR--KSVFLT 77

Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173
           +++ T + N L   +     +   R     +          +       G     Y    
Sbjct: 78  SHTHTAIDNILLKLL--QHDLPILRLGDIAKIHPQTTRYHISNQWSGDFGTYQSIYESKS 135

Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPD----IINKSILGFFTELNPNRFWIMTSN 229
              +    +    P          DEA   P+             F   +  +   +  N
Sbjct: 136 IVAATVYTNLQQFPRGKVFDLCIVDEAGQIPEPSILQAFLLSKQVFLVGDSKQLPPIVQN 195

Query: 230 T 230
            
Sbjct: 196 P 196


>gi|148380306|ref|YP_001254847.1| terminase large subunit [Clostridium botulinum A str. ATCC 3502]
 gi|148289790|emb|CAL83898.1| terminase large subunit [Clostridium botulinum A str. ATCC 3502]
          Length = 448

 Score = 49.2 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/251 (10%), Positives = 63/251 (25%), Gaps = 23/251 (9%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRP----GMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
             GRG  K++  +  ++  I          + + I   +  L+ +++ ++   + ML   
Sbjct: 32  KGGRGSTKSSFISIEIVLGIMRDAQEEIYSNGLVIRRVKETLRESVYDQIKWAIYMLGVE 91

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                         W     +  +        I  R   + +              ++ +
Sbjct: 92  DE------------WDMPESKLRITYKPTGQAILFRGADKVKKLKSTKVSKGWIKYIWYE 139

Query: 199 EASGTPD-IINKSILGFFTELNPNRFWIMTSNTRRLN-GWFYDIFNIPLEDWKRYQIDTR 256
           EA    +    +++        P      + N       W         +D   +     
Sbjct: 140 EADEFENYDKIRNVNQSLMRGGPEFEVFYSFNPPESQRNWTNMEVLEERKDKFVHHSTYL 199

Query: 257 TVE--GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314
           TV    +   F         ++      + LG         F            +    +
Sbjct: 200 TVPKEWLGEQFVIEAEHLKKVNKTKYDHDYLGAVTGTGGEVFRNVTV---RNITDDEIKV 256

Query: 315 YAPLIMGCDIA 325
           +  +  G D  
Sbjct: 257 FDHVKNGLDFG 267


>gi|209363587|ref|YP_002268005.1| terminase large subunit [Staphylococcus phage phi2958PVL]
 gi|208973088|dbj|BAG74404.1| terminase large subunit [Staphylococcus phage phi2958PVL]
          Length = 453

 Score = 49.2 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/315 (13%), Positives = 82/315 (26%), Gaps = 58/315 (18%)

Query: 85  GRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
           GR  GKTT  + +  + +S     G  I  +AN   Q +  L+ E    +   P      
Sbjct: 2   GRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKASP------ 54

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
                        +L +    +  + +     +    +          +      DE   
Sbjct: 55  -------------KLDKNFRTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHE 101

Query: 203 TPD-IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT---- 257
             D  +   I              +T+   +L+G   D+     +   +   D RT    
Sbjct: 102 FKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVDMVEAGRDTLDQIIEDERTFYYL 161

Query: 258 -----------------------VEGIDSGFHEGIISRYGLDSDV--ARIEILGQFPQQE 292
                                  V        E         ++      +    F   +
Sbjct: 162 ASLDDDDDINDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFANND 221

Query: 293 VNNFIPHNYIEEAMSR-EAIDDLYAPLIMGCDIAGEGGDKTV----VVFRRGNIIEHIFD 347
             +FI +  +++        +    P  +G D++    D T          G +      
Sbjct: 222 EMSFIDYPTLQKNNEIVSLEELEGRPCTIGYDLSET-EDFTAACATFALDNGKVAVLSHS 280

Query: 348 WSAKLIQETNQEGCP 362
           W  K   E + E  P
Sbjct: 281 WIPKHKVEYSNEKIP 295


>gi|225620876|ref|YP_002722134.1| Phage terminase large subunit [Brachyspira hyodysenteriae WA1]
 gi|225215696|gb|ACN84430.1| Phage terminase large subunit [Brachyspira hyodysenteriae WA1]
          Length = 456

 Score = 49.2 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 50/180 (27%), Gaps = 20/180 (11%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAIS-AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
            +  +          T  +  I+  GRG GK+   A +++     + G  I+C    +  
Sbjct: 2   NIKFNILKPFEKWANTEKRLKIAFGGRGGGKSESIARILIAKSFEKSG-VILCSREIQKS 60

Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
           +  + +  +   +  L    +F ++                 +     +         E 
Sbjct: 61  ISYSTYPLLISIIKELNLEKFFNIK--------------RNEIINKITNCKFIFLGIREC 106

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
             +     +  +    F +EA        + +            WI   N R    + Y 
Sbjct: 107 SIEEIKSIY--NVRICFIEEAQTLTQRSYEILEPSIRAEKSE-IWIAF-NPRFETDFIYK 162


>gi|9631219|ref|NP_048000.1| hypothetical protein AtHV3gp24 [Ateline herpesvirus 3]
 gi|4019255|gb|AAC95553.1| orf29a/b [Ateline herpesvirus 3]
          Length = 683

 Score = 49.2 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 61/177 (34%), Gaps = 16/177 (9%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GKT +   ++  LI++   + +  +A+ +    N+++ E+   L       WF  +
Sbjct: 218 PRRHGKTWIVVAIISMLITSVENLHVGYVAHQKHVA-NSVFTEIINTLQK-----WFPSK 271

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
           ++ +        + +      S     +C                     ++ DEA+   
Sbjct: 272 NIDVK-KENGTIIYKIPGKKPSTLMCASCF--------NKNSIRGQTFNLLYIDEANFIK 322

Query: 205 DIINKSILGFFTELNPNRFWIMTSNT-RRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
                +ILGF  + +    +I + N+  +   + +++ N   +            + 
Sbjct: 323 KDSLPAILGFMLQKDAKLIFISSVNSGDKATSFLFNLKNASEKMLNIVNYICPDHKD 379


>gi|71903662|ref|YP_280465.1| terminase large subunit [Streptococcus pyogenes MGAS6180]
 gi|71802757|gb|AAX72110.1| terminase large subunit [Streptococcus pyogenes MGAS6180]
          Length = 437

 Score = 49.2 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/282 (13%), Positives = 80/282 (28%), Gaps = 23/282 (8%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
             ++  +   RG  K+   A   +  +   P  +++ I       K + + +     + L
Sbjct: 35  NFYRV-VKGSRGSKKSKTTALNFIVRLLKYPWANLLVIRRYSNTNKQSTYTDFKWACNQL 93

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
              H F+                   + + +    I  R   +E   T +          
Sbjct: 94  KVTHLFKFNES------------LPEITVKATGQKILFRGLDDELKITSITVDVGLLCWA 141

Query: 196 FNDEASGTPDI-----INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NIPLED 247
           + +EA           + +SI G     +  +   +T N      W   +F        D
Sbjct: 142 WFEEAYQIETEDKFSTVVESIRGSLDAPDFFKQITVTFNPWSERHWLKRVFFDEETKRAD 201

Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
                   R  E +D          Y  +   ARI   G++   E   F     ++  + 
Sbjct: 202 TFSGTTTFRVNEWLDDVDKRRYEDLYKTNPRRARIVCDGEWGVAEGLVFDNFEVVDFDVE 261

Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS 349
           +            G D        T++      + + ++ ++
Sbjct: 262 KTIQRVKETS--AGMDFGFTQDPTTLICVAVDLVNKELWLYN 301


>gi|326772022|ref|ZP_08231307.1| conserved hypothetical protein [Actinomyces viscosus C505]
 gi|326638155|gb|EGE39056.1| conserved hypothetical protein [Actinomyces viscosus C505]
          Length = 370

 Score = 49.2 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 53/175 (30%), Gaps = 12/175 (6%)

Query: 60  EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
             ++    S  +          I+  RG+GKT +   +     S R    ++    +   
Sbjct: 21  RVIEEFLESLDDGPGAPGLLELITGARGVGKTVMLTAL---GDSARERGWVVVDETAREG 77

Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
           L + L AE ++ LS L  +    + SLSL           +        +    R  ++ 
Sbjct: 78  LMDRLAAEFTRQLSQLAGKERSRLTSLSLSTPLGGGSATLEHAPTPEPSWRQKARALTQW 137

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF---FTELNPNRFWIMTSNTR 231
             +     H T  +    DE    P    +++                +M    +
Sbjct: 138 LAE-----HGTGLLLTI-DEVHAIPREELRALSAEVQHLIREGAPIGLLMAGLPK 186


>gi|229119295|ref|ZP_04248598.1| phage terminase, large subunit [Bacillus cereus Rock1-3]
 gi|228664161|gb|EEL19699.1| phage terminase, large subunit [Bacillus cereus Rock1-3]
          Length = 522

 Score = 49.2 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/317 (10%), Positives = 85/317 (26%), Gaps = 42/317 (13%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTR--PGM 108
             WQ  +   +      N +     + + A +   +  GKT +    +++ +      G 
Sbjct: 24  ESWQKFYFANIYGWQKYNEDGKAVRVIRTAYLQVPKKNGKTIMGGSPVIYAMYGEGVKGA 83

Query: 109 SIICIANSETQLKNTLWAE---VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
                AN+  Q +N        +     + P    ++ +  ++    +     +      
Sbjct: 84  DCYISANTFEQCQNAAGPIALTIENSPDLRPDTRIYKGKEDTIKSIKYTFVEDDIKYANV 143

Query: 166 SKHYTITCRTYSEERP--------------DTFVGPHN-----THGMAVFNDEASG---- 202
            K  T        + P              + +    +        + +    A      
Sbjct: 144 IKVLTKDNAGNEGKNPYINYFDEVHAQMDREQYDNLRSAQIAQEEPLNIITSTAGKNTGS 203

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
               I        +E   + +++M     +   W         + W+    +      ++
Sbjct: 204 LGTQIYTYAKEVLSEDKDDSWFMMIYEPNKKFDWTD------RDVWRMVNPNMDIS--VN 255

Query: 263 SGFHEGIISRYGLDS---DVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319
             F E        +S        + L  F       +   + +++ +     D      +
Sbjct: 256 MEFLENAFKEAQNNSFNKAEFLSKHLDVFVNYAET-YFDKDQLDKMLVDYLKDVEGLTCV 314

Query: 320 MGCDIAGEGGDKTVVVF 336
           +G D++    D T V  
Sbjct: 315 VGVDLSRR-TDLTCVSI 330


>gi|74317324|ref|YP_315064.1| ATP-dependent DNA helicase [Thiobacillus denitrificans ATCC 25259]
 gi|74056819|gb|AAZ97259.1| ATP-dependent DNA helicase [Thiobacillus denitrificans ATCC 25259]
          Length = 702

 Score = 49.2 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/279 (12%), Positives = 80/279 (28%), Gaps = 26/279 (9%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             + AG G GKT + A  +  L++     + I +     +  + +   V + L  +    
Sbjct: 45  LLVIAGAGSGKTNVLAHRVAHLVAHGADPAAILLLTFSRRAADEMVRRVERILRQVAAGR 104

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY--SEERPDTFVGPHNTHGMAVFN 197
                +       +++           +       T    E+  D      +        
Sbjct: 105 PRLAGAKLAWAGTFHSIGARLLREYAPRIGLDPAFTIHDREDSADLLNLVRHE---LGLA 161

Query: 198 DEASGTPDII-----NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
           D     P          + +     L            +R   W  +  +     +  Y 
Sbjct: 162 DTGKRFPRKNTCLAIYSAAVNTLAPLGDVL--------QRRYPWCVEWEDELKRLFLAYV 213

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
              +    +D         +   +  +AR E+  +F    V+ +   N ++ ++ R    
Sbjct: 214 EAKQAQHVLDYDDLLLYWGQIAGEPTLAR-EMGARFSHILVDEYQDTNALQASIVRALKP 272

Query: 313 DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
           D     ++       G D   +   RG  + +I D+  +
Sbjct: 273 DGRGVTVV-------GDDAQSIYAFRGATVRNILDFPGQ 304


>gi|56692921|ref|YP_164303.1| terminase large subunit [Pseudomonas phage F116]
 gi|48527507|gb|AAT45882.1| terminase large subunit [Pseudomonas phage F116]
          Length = 543

 Score = 49.2 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/328 (13%), Positives = 79/328 (24%), Gaps = 62/328 (18%)

Query: 40  IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99
            +G       +P+R Q  F+  +                +  I   R +G TTL A M L
Sbjct: 55  EEGDSFVLPFKPNRAQKRFIRRLWH--------------RNLILKARQLGFTTLIAIMWL 100

Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159
                        IA      K                +  F   +L       +     
Sbjct: 101 DHALFNGDQRCGIIAQDRDAAKVIF-----------RDKVKFAYDNLPEEIRERFPTAAA 149

Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT----PDIINKSILGFF 215
            +  +   H   + R  +  R  T    H          E        PD   + + G  
Sbjct: 150 NADELLFAHNNSSVRVATSMRSGTIHRLH--------VSEFGKICAKYPDKAQEVVTGSI 201

Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIPL-----------EDWKRYQIDTRTVE----- 259
             +  N   ++ S      G F+ +  I              D++ +             
Sbjct: 202 PAVPTNGILVIESTAEGREGEFFKMVQIAEANHASRKKLTPRDYRMHFYAWWQEPKYRLD 261

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN--NFI------PHNYIEEAMSREAI 311
                        + L       + +G+    + +   +         +  EE M +E  
Sbjct: 262 SRTIELTREEHEYFDLVEATVMRD-MGERITIDPDQRAWYVATKRADFSGAEEKMWQEYP 320

Query: 312 DDLYAPLIMGCDIAGEGGDKTVVVFRRG 339
                   +  +      D   +  R G
Sbjct: 321 SFPAEAFQISTEGNWYAKDMATLRKRNG 348


>gi|30260628|ref|NP_843005.1| prophage LambdaBa04, terminase, large subunit, putative [Bacillus
           anthracis str. Ames]
 gi|47525737|ref|YP_017086.1| prophage lambdaba04, terminase, large subunit [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49183471|ref|YP_026723.1| prophage LambdaBa04, terminase, large subunit [Bacillus anthracis
           str. Sterne]
 gi|65317890|ref|ZP_00390849.1| COG4626: Phage terminase-like protein, large subunit [Bacillus
           anthracis str. A2012]
 gi|165870657|ref|ZP_02215310.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
           anthracis str. A0488]
 gi|229602404|ref|YP_002865072.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
           anthracis str. A0248]
 gi|254724931|ref|ZP_05186714.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
           anthracis str. A1055]
 gi|254725936|ref|ZP_05187718.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
           anthracis str. A1055]
 gi|254738918|ref|ZP_05196620.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
           anthracis str. Western North America USA6153]
 gi|254756237|ref|ZP_05208266.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
           anthracis str. Vollum]
 gi|254762056|ref|ZP_05213905.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
           anthracis str. Australia 94]
 gi|30253996|gb|AAP24491.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
           phage lambda Ba01]
 gi|47500885|gb|AAT29561.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49177398|gb|AAT52774.1| prophage LambdaBa04, terminase, large subunit, putative [Bacillus
           anthracis str. Sterne]
 gi|164713491|gb|EDR19015.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
           anthracis str. A0488]
 gi|229266812|gb|ACQ48449.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
           anthracis str. A0248]
          Length = 562

 Score = 49.2 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 59/205 (28%), Gaps = 26/205 (12%)

Query: 36  FPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95
           F    KGK          WQ  F+ ++    H              ++  R  GK+TL++
Sbjct: 65  FCKHSKGKWAGKPIDLELWQKAFIGSLFGFIHKIDGTRKYREALLIVA--RKNGKSTLSS 122

Query: 96  WMMLWL--ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
            + L+L       G  +  +A  E Q K  +W+E  + +   P         LS      
Sbjct: 123 GICLYLQIADGEGGAEVYAVATKEKQAK-IVWSEAKRMVKKSPV--------LSKRIKAL 173

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK--SI 211
             EL         +       T            H         DE     D       +
Sbjct: 174 VKELNADFNDSTFQPVGSDSDTLDGLN------VHGAS-----LDEIHAWKDKNLYDVIV 222

Query: 212 LGFFTELNPNRFWIMTSNTRRLNGW 236
            G      P    I T+ T R + +
Sbjct: 223 DGTSAREQPLILMITTAGTVRESVY 247


>gi|300724761|ref|YP_003714086.1| putative terminase large subunit [Xenorhabdus nematophila ATCC
           19061]
 gi|297631303|emb|CBJ91998.1| putative terminase large subunit [Xenorhabdus nematophila ATCC
           19061]
          Length = 553

 Score = 49.2 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/264 (10%), Positives = 56/264 (21%), Gaps = 28/264 (10%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             WQ      +                   +   R   K+T+ A +  W +    G   I
Sbjct: 70  EPWQQFAFANLFGFKIKATGRRKYRSAYIQV--PRKNAKSTVAAILANWFLVMEQGQQDI 127

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A         ++                     +   S     L ++      K    
Sbjct: 128 YTAAVSRDQARIVF-------------------DDARQMSLLSKPLKKRVTIQQHKVTYP 168

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
              +  +           T+      DE    PD    S L       P       +   
Sbjct: 169 KTNSLLKPLAAKAATIEGTNPSLAVVDEYHLHPDNAVYSALELGMGARPEGILFAITTAG 228

Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL-GQFPQ 290
                          D+    +++             +     +D +   I+        
Sbjct: 229 SNVISACKQHY----DYCCQILNSEEHNASLFALIYELDDENEIDDESLWIKANPNLNVS 284

Query: 291 QEVNNFIPHNYIEEAMSREAIDDL 314
            + +    H+ I++A    +    
Sbjct: 285 VDSDAL--HDTIQKARGIPSQWTE 306


>gi|167385831|ref|XP_001737507.1| U5 small nuclear ribonucleoprotein 200 kDa helicase [Entamoeba dispar
            SAW760]
 gi|165899662|gb|EDR26206.1| U5 small nuclear ribonucleoprotein 200 kDa helicase, putative
            [Entamoeba dispar SAW760]
          Length = 1804

 Score = 49.2 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 49/192 (25%), Gaps = 18/192 (9%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               + A  G GKT      ML +    P   ++ IA  +  +K  +     K ++M  + 
Sbjct: 1023 NVIVGAPTGSGKTVAAELCMLKIFRDTPDKKVVYIAPMKALVKEKMSDWKDKLITMGKNI 1082

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                        +   A++    +    + +    R ++++               V  D
Sbjct: 1083 VELTGDFTPDSAAIAKADV----ILTTPEKWDGITRLWTKKSYV-------QKVGLVILD 1131

Query: 199  EASGTPDIINKSILGFFTEL-------NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY 251
            E     +     I    T                  +          +   +  +    +
Sbjct: 1132 EVHLLGEERGPVIEAIVTRTKQINKKLGIQTRICALTTAIANVDDMMNWIGVDKDSVFNF 1191

Query: 252  QIDTRTVEGIDS 263
                R V  I  
Sbjct: 1192 HSSLRPVPLIAH 1203


>gi|302671030|ref|YP_003830990.1| PhoH family protein [Butyrivibrio proteoclasticus B316]
 gi|302395503|gb|ADL34408.1| PhoH family protein [Butyrivibrio proteoclasticus B316]
          Length = 463

 Score = 49.2 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/178 (11%), Positives = 47/178 (26%), Gaps = 7/178 (3%)

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GMSIICIANSETQLK 121
                +           +    G  KT  +  + L  +  RP      I+    + +Q  
Sbjct: 242 FLQEALMQPADVAPLVIVKGMAGTAKTFYSLAVGLEKMINRPTGEYRRILICRPN-SQFD 300

Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
           + +          +       + +L         E  +    +  K   +  R   +   
Sbjct: 301 DDIGFLPGDEQEKISPLMRPIIDNLEQLIDSNEEERYKDEKELQGKTDEVFERGIVQCEA 360

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
             F+   +     +  DEA            G  T    +   I+  +  +++  F D
Sbjct: 361 LNFIRGRSILKTYLIIDEAQNMTPTQ---AKGIITRAGKDTKIILLGDPNQIDRPFLD 415


>gi|171681273|ref|XP_001905580.1| hypothetical protein [Podospora anserina S mat+]
 gi|170940595|emb|CAP65823.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1721

 Score = 49.2 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 42/131 (32%), Gaps = 10/131 (7%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT     ++L L S  P   I+  A +   + N L   +S   +  P R   E++ +
Sbjct: 1332 GTGKTETILSIILSLQSHFPDSRILLTAPTHNAVDNVLRRYLSLNPTHPPLRISTEIRKV 1391

Query: 147  SLHPSGWYAELL----------EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
            S   + +  + +                  K        +S     +     N     V 
Sbjct: 1392 SPDVTPYTLDAMAGIELNTLHSRAETTKAKKRVKAAKIVFSTCIGSSLGLLRNEMFDIVI 1451

Query: 197  NDEASGTPDII 207
             DEAS   +  
Sbjct: 1452 IDEASQQTEGC 1462


>gi|197284809|ref|YP_002150681.1| phage terminase, large subunit [Proteus mirabilis HI4320]
 gi|194682296|emb|CAR42063.1| putative phage terminase, large subunit [Proteus mirabilis HI4320]
          Length = 577

 Score = 49.2 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/343 (9%), Positives = 79/343 (23%), Gaps = 56/343 (16%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
            WQ   + ++               F+   + +G+G GK+ +   + L+ +     P   
Sbjct: 89  PWQCFVIGSIF----GWKMTDGTRRFRIVYVESGKGSGKSPMAGGVGLYCLVADSEPRAE 144

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           +   A  + Q    L+ +    +   P      +        G   E     +       
Sbjct: 145 VYAAATKKDQAM-VLFRDAVAMVDQSP-----ALSQRITKSGGTGKEWNLAYLK------ 192

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
             T   +     D               DE     +     ++   T+        M +N
Sbjct: 193 --TSSFFRPISSDDGQS--GPRPHCALIDEIHEHKNNTAVEMMRAGTKGRRQALIFMITN 248

Query: 230 TR-RLNGWFYDIFNIPL---------------------------EDWKRYQIDTRTVEGI 261
           +        YD                                 ++    + +       
Sbjct: 249 SGHDKTSVCYDYHEYGRKVAEGTIEDDSFFSYICSLDEGDDPFKDESCWGKANPSLGYTF 308

Query: 262 DSGFHEG---IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
              +                + R     Q+   +        +++   +    D      
Sbjct: 309 SDRYLREQVTQARGMPAKESIVRRLNFCQWVDADNPWINSETWMQCENTFTFDDLQGEEC 368

Query: 319 IMGCDIAGEGGDKTVVVF-RRGNIIEHIFDWSAKLIQETNQEG 360
             G D++G   D T +          ++  W+ K       + 
Sbjct: 369 YGGLDLSGT-KDLTALALYFPSLKRLYVEFWTPKDTLLDRAKT 410


>gi|56962313|ref|YP_174038.1| hypothetical protein ABC0537 [Bacillus clausii KSM-K16]
 gi|56908550|dbj|BAD63077.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
          Length = 893

 Score = 49.2 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 53/194 (27%), Gaps = 20/194 (10%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q + +  +     +          +  + A  G GKT L   +M+ L   +P   + 
Sbjct: 15  RTYQKKILADMAALLQNK---------RVHLVAPPGSGKTVLGLELMVRL--NKPTFILA 63

Query: 112 CIANSETQLKNTLWAEVSK------WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
                  Q          +      W+S    +  F   +         +         D
Sbjct: 64  PTVAIRNQWAERFLELFWQGDKTPDWISTDIRQPAFVTIATYQGLHSLCSFEDSGGFEGD 123

Query: 166 SKHYTITCRTYS---EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222
                   +T S   +ER + +    +     +  DEA        KS + F   LN   
Sbjct: 124 DVDIATEHQTESLGGKERKEAYKRLLDMDFQTLIVDEAHHLRAAWWKSTIDFRRSLNKPT 183

Query: 223 FWIMTSNTRRLNGW 236
              +T+        
Sbjct: 184 IVALTATPPYDVSQ 197


>gi|114564992|ref|YP_752506.1| type III restriction enzyme, res subunit [Shewanella frigidimarina
           NCIMB 400]
 gi|114336285|gb|ABI73667.1| type III restriction enzyme, res subunit [Shewanella frigidimarina
           NCIMB 400]
          Length = 1061

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 58/199 (29%), Gaps = 29/199 (14%)

Query: 39  GIKGKPLEHFS-QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97
           G       HF  +P   Q E +E +      +V  +    +K  + A  G GKT ++A+ 
Sbjct: 317 GYSDDSAFHFDIKPFAHQREILEQL------DVERTVHQRYKNLVVAATGTGKTLISAFD 370

Query: 98  MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
                   P  + + +A+ +  LK  L               +  +   +     W AE 
Sbjct: 371 FARFYKQHPEANFLFVAHRQEILKQAL-------------SAYRGVLKNNQFGELWVAEH 417

Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217
              S         +     S     + +         +  DE             G    
Sbjct: 418 KPNSYRH------LFASIQSLNLQLSSLPLTADFYDYIVIDEVHHIAASSY---RGLLAH 468

Query: 218 LNPNRFWIMTSNTRRLNGW 236
            +P     +T+   R +G 
Sbjct: 469 FSPKILLGLTATPERHDGQ 487


>gi|226326214|ref|ZP_03801732.1| hypothetical protein PROPEN_00056 [Proteus penneri ATCC 35198]
 gi|225205401|gb|EEG87755.1| hypothetical protein PROPEN_00056 [Proteus penneri ATCC 35198]
          Length = 564

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/342 (10%), Positives = 83/342 (24%), Gaps = 54/342 (15%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSI 110
            WQ   + ++     ++       ++   + +G+G GK+ +   + L+ +     P   +
Sbjct: 76  PWQCFVIGSIFGWKMTDGTRRFRMVY---VESGKGSGKSPMAGGVGLYCLVADSEPRAEV 132

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
              A  + Q    L+ +    +   P      +        G   E     +        
Sbjct: 133 YAAATKKDQAM-ILFRDAVAMVDQSP-----ALSQRITKSGGTGKEWNLAYLK------- 179

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
            T   +     D               DE     +     ++   T+        M +N+
Sbjct: 180 -TSSFFRPISSDDGQS--GPRPHCALIDEIHEHKNNTAVEMMRAGTKGRRQALIFMITNS 236

Query: 231 R-RLNGWFYDIFNIPL-----------------------EDWKRYQIDTRTVEGIDSGFH 266
                   YD                             + +K      +    +   F 
Sbjct: 237 GHDKTSVCYDYHEYGRKVAEGTIEDDSFFSYICSLDESDDPFKDESCWGKANPSLGYTFS 296

Query: 267 EG-------IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319
           E                  + R     Q+   +        +++   +    D       
Sbjct: 297 ERYLREQVTQARGMPAKESIVRRLNFCQWVDADNPWINSETWMQCENTFTFDDLQGEECY 356

Query: 320 MGCDIAGEGGDKTVVVF-RRGNIIEHIFDWSAKLIQETNQEG 360
            G D++G   D T +          ++  W+ K       + 
Sbjct: 357 GGLDLSGT-KDLTALALYFPSLKRLYVEFWTPKDTLLDRAKT 397


>gi|227888706|ref|ZP_04006511.1| ATP-dependent RNA helicase [Lactobacillus johnsonii ATCC 33200]
 gi|227850733|gb|EEJ60819.1| ATP-dependent RNA helicase [Lactobacillus johnsonii ATCC 33200]
          Length = 461

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 59/234 (25%), Gaps = 23/234 (9%)

Query: 37  PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
           P    G    +F +P + Q   + A+                   + A  G GKT     
Sbjct: 15  PELQAGLEKINFKKPTKVQSSVIPAL------------LNKKNVVVQAATGSGKTHAYLI 62

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
            +L +I     ++   +     +L N L+    +       R    +     +  G    
Sbjct: 63  PILNMIDENAPVTQAIVTAPSRELANQLYKVARQ------LRDASGLNISIEYLGGGNDR 116

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG-TPDIINKSILGFF 215
             +           I           +    +  +  A   DEA           +    
Sbjct: 117 NRQIEKAESRAPQLIIATPGRLHDFASKKFINLENVKAFIIDEADMTLDMGFLSQMDEIM 176

Query: 216 TELNPNRFWIMTSN--TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267
           ++L+        S     +L  +     + P  ++            I +   +
Sbjct: 177 SKLDKKAVLGAFSATIPVKLENFLRKYMSKP--EFIVIDNPAIIAPTIQNDLID 228


>gi|295695496|ref|YP_003588734.1| SNF2-related protein [Bacillus tusciae DSM 2912]
 gi|295411098|gb|ADG05590.1| SNF2-related protein [Bacillus tusciae DSM 2912]
          Length = 688

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/278 (10%), Positives = 72/278 (25%), Gaps = 32/278 (11%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           +P  +Q++ +++V           +            G+GKT      M+  I       
Sbjct: 167 EPFEYQIKTVQSVMHQFKGRALLCDEV----------GLGKTVEAGICMMEYIMRGLAKK 216

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I+ +      L N    E+ +  +       F         +                + 
Sbjct: 217 ILILVP--PSLINQWHEEMKRKFNQ-----DFIRSDDRAFIALGEEAWRR--------YN 261

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
            +     + +RP+      + H   +  DEA    +        F   L      ++T+ 
Sbjct: 262 KVIASLATAKRPNHRRVISDIHYDLIVVDEAHHVKNRN-SVAWQFVNSLKKKYMLLLTAT 320

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
             + +          L+  +           +       + +           E++ +  
Sbjct: 321 PVQNSLEELYNLITLLKPGQLKTYSHFRRHFVVDNQGVEVKN--ADKLRALLSEVMIRNR 378

Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE 327
           +  V+             R +  +      +  D++  
Sbjct: 379 RSSVDVKFTKRQAHTKTVRLSEPEQ----RLYIDLSRF 412


>gi|330836783|ref|YP_004411424.1| phage protein [Spirochaeta coccoides DSM 17374]
 gi|329748686|gb|AEC02042.1| phage uncharacterized protein [Spirochaeta coccoides DSM 17374]
          Length = 541

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 52/354 (14%), Positives = 98/354 (27%), Gaps = 51/354 (14%)

Query: 21  HAECVLSFKNFVMRFFP---------WGIKGKPLEHFSQPHR-----W-----QLEFMEA 61
           H +       F+  +FP         W      +   +Q  +     W     Q   + A
Sbjct: 39  HEKFRTDIGGFMKYYFPHYIRLEPPSWQRLLFSIFENTQFDKRGRPYWIVTEKQARQLSA 98

Query: 62  VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW-MMLWLISTRPGMSIICIANSETQL 120
           V     S++ +    +   A+ A R  GK+T+ A  ++LW +       ++ I +++   
Sbjct: 99  VHRKEFSHIPHQVDILRGLALCAPREQGKSTVFARLLILWGLIYGYFRFVVLIRSNDALA 158

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
              L   + ++         +  Q  S+  SG Y      ++    +   +      E+R
Sbjct: 159 GQFLDDTMVEFEDNQRLLADYGNQRGSVWKSGQYLLKNGAALVSIGRGAGVRGLVSREKR 218

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDII--------NKSILGFFTELNPNRFWIMTSNTRR 232
           PD            +  D+ +   D             I      L+ N      +    
Sbjct: 219 PD-----------VIILDDITTDQDKNNVATLHKIYDWISSAVFGLSKNAVIFTLNTIYN 267

Query: 233 LNGW----FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI------ISRYGLDSDVARI 282
                      I    L  W   +      +G  + + E          R  + S    I
Sbjct: 268 GEDPQSTILKKIVAQELPGWVGVRFSAEIEDGKKALWPEYWPLAALRKKRMEVGSKTYNI 327

Query: 283 EILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
           E L      +         +      E        +  G D   EG D   +  
Sbjct: 328 EYLSI-TTDDGTKIFKAEQMLYVPGTEISI-PDYEIAFGVDPNAEGSDDAAIGV 379


>gi|268318980|ref|YP_003292636.1| ATP-dependent RNA helicase [Lactobacillus johnsonii FI9785]
 gi|262397355|emb|CAX66369.1| ATP-dependent RNA helicase [Lactobacillus johnsonii FI9785]
          Length = 461

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 58/231 (25%), Gaps = 23/231 (9%)

Query: 40  IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99
             G    +F +P + Q   + A+                   + A  G GKT      +L
Sbjct: 18  QAGLEKINFKKPTKVQSSVIPAL------------LNKKNVVVQAATGSGKTHAYLIPIL 65

Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159
            +I     ++   +     +L N L+    +       R    +     +  G      +
Sbjct: 66  NMIDENAPVTQAIVTAPSRELANQLYKVARQ------LRDASGLNISIEYLGGGNDRNRQ 119

Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG-TPDIINKSILGFFTEL 218
                      I           +    +  +  A   DEA           +    ++L
Sbjct: 120 IEKAESRAPQLIIATPGRLHDFASKKFINLENVKAFIIDEADMTLDMGFLSQMDEIMSKL 179

Query: 219 NPNRFWIMTSN--TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267
           +        S     +L  +     + P  ++            I +   +
Sbjct: 180 DKKAVLGAFSATIPVKLENFLRKYMSKP--EFIVIDNPAIIAPTIQNDLID 228


>gi|149911893|ref|ZP_01900493.1| putative bacteriophage terminase, ATPase subunit [Moritella sp.
           PE36]
 gi|149805043|gb|EDM65069.1| putative bacteriophage terminase, ATPase subunit [Moritella sp.
           PE36]
          Length = 601

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/327 (12%), Positives = 85/327 (25%), Gaps = 76/327 (23%)

Query: 56  LEFMEAVDVHCHSNVN----NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            E ++ +  +                 +  I   R IG T   A+   +         I 
Sbjct: 146 KEMLDELKDNLLYPHQLHWFEHQDYRSRF-ILKPRQIGATFYFAFEAFYDAVVNGRNKIF 204

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A S  Q +       +  +++   +   E+    L          + +          
Sbjct: 205 ISA-SRDQAEIF----KANIIALCREQFGIELSGSPLTMRNKG----KTTTLYFKSTNAR 255

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSN 229
           T ++ S +               ++ DE    P    +        T  +        S 
Sbjct: 256 TAQSASGD---------------LYIDEVFWIPKFKELRSLAQAMATHKDFRI--TYFST 298

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI----- 284
               +   YD++N     W R        E      H+ +      D  + R ++     
Sbjct: 299 PSVTSHEAYDLWN---GRWYRKTKACNDPEFAIDVSHKTLKHGLLCDDGIWRQKLNVYDV 355

Query: 285 -------------LGQFPQQEVNNFIPHNYIEEAMS----------------------RE 309
                          ++ ++E +N     +I++A S                        
Sbjct: 356 VEQGFDRIDISMLENEYSKEEFDNLFMCKFIDDAHSAFSLKQLMACVGNSKKWTDFDPTW 415

Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVF 336
           +      P+++G D A      +VVV 
Sbjct: 416 SRPYAMKPVVIGFDPARTRDIASVVVL 442


>gi|312984196|ref|ZP_07791542.1| putative phage terminase, large subunit [Lactobacillus crispatus
           CTV-05]
 gi|310894415|gb|EFQ43491.1| putative phage terminase, large subunit [Lactobacillus crispatus
           CTV-05]
          Length = 632

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/351 (11%), Positives = 87/351 (24%), Gaps = 46/351 (13%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW---- 96
               L        WQ   +  ++     N            IS GRG GKT +       
Sbjct: 88  PDVDLHKPLPLMNWQKFILAMINGWKDENDEKRFTD---IHISVGRGQGKTQIAGIQMCK 144

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM---------LPHRHWFEMQSLS 147
            +L           +  AN+  Q    L+  + K L           L      ++Q+  
Sbjct: 145 AVLIDTLNYTNKDFLVTANTSDQ-STKLFGYIKKMLEAVIKIEPFASLAKESGLDLQTNQ 203

Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEE-----------RPDTFVGPHNTHGMAVF 196
           +       ++ + S   D    T       +E                      +   + 
Sbjct: 204 IIEKRTNNKVWKISYEADKYDSTHNVLAIYDETGALNTYDRITDITDGQAQVIPYHQFIK 263

Query: 197 NDEASGTPDIINKSILGFFT--------ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW 248
              A   P                        N   ++ +       +  + +       
Sbjct: 264 ISSAYPDPTSPFHQEQITLQHVMEKDYDREGDNSLCLVWAQDNLDETFKPETWEKSNP-- 321

Query: 249 KRYQIDTRTVEGIDSGFHEGIISRYGLDS-DVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
               +     +       +        ++    + + L  + +Q   +++    +E A+ 
Sbjct: 322 -LIGLSHSERKRRTENLIKQRDQGMLTNTLHKFQNKNLNLWLKQSTASYLNLKDVENAVD 380

Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVF-RRGNIIEHIFDWSAKLIQETN 357
                D    + MG D +    D T V F       + +  W    + + +
Sbjct: 381 DSFEID-GLRVYMGLDYSMF-SDNTAVGFAFPYTTADGVHKWH---MMQHS 426


>gi|149910732|ref|ZP_01899367.1| phage terminase, large subunit, putative [Moritella sp. PE36]
 gi|149806172|gb|EDM66151.1| phage terminase, large subunit, putative [Moritella sp. PE36]
          Length = 566

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/304 (10%), Positives = 67/304 (22%), Gaps = 55/304 (18%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ+  +  +                   I+  R  GK+TL+  + L+ +          
Sbjct: 88  PWQIFMLCCLFGMKSKEDGLLKYNYCYAQIA--RKGGKSTLSGGITLFKLIKGGYAPQAF 145

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            A +  +    LW      +S  P              + +     E  +      +   
Sbjct: 146 SAATTREQAAILWNAAKIMISQSPKLR-----------TIFKVLQNEIRLPHKQGIFRPV 194

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEAS----------------GTPDIINKSILGF-- 214
                                    DEA                   PD +   I     
Sbjct: 195 ASQS--------HTLDGKEPTISILDEAHAIVDRNLYEVLESAMGTIPDQLFLIITTAGF 246

Query: 215 ----FTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV--------EGID 262
                          +       + +FY I  I   D    + +              I 
Sbjct: 247 ILDGLCTQLNRDGKAVLEQQVNQDSYFYLIAEIDEGDDPWLEENWYKANLGMAHGLPNIK 306

Query: 263 SGFHE-GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD--LYAPLI 319
           +   +  +             + L  F     ++++  + ++    +    D        
Sbjct: 307 TLRAQAEMAKISVEKKAGWYTKRLNIFVTG-TDSWLDMDEVKACRDKSLNIDDFRGKECY 365

Query: 320 MGCD 323
           +G D
Sbjct: 366 IGID 369


>gi|257077324|ref|ZP_05571685.1| type III restriction protein res subunit [Ferroplasma acidarmanus
           fer1]
          Length = 649

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 64/188 (34%), Gaps = 30/188 (15%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM- 108
            P+ +Q + +E +        N  N       + +  G GKT ++A+     +   P   
Sbjct: 332 HPYPYQSKILEELRADRQLRGNYHN------LVVSATGTGKTIISAFDYKQFVREHPDSS 385

Query: 109 -SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
             ++ IA+ E  LK ++               +  +       + +       S     +
Sbjct: 386 NRLLFIAHREEILKQSI-------------ACFRNVLKDPEFGNLYVGNYKPLS----DE 428

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
           H  ++ +T+   RPD  +  H  +   +  DE          ++       NP     +T
Sbjct: 429 HLFMSIQTFESIRPDLQLDKH--YYDFIIIDEFHHAAAKSYANL---LNHFNPEIMLGLT 483

Query: 228 SNTRRLNG 235
           +   R++G
Sbjct: 484 ATPERMDG 491


>gi|50955854|ref|YP_063142.1| phage-related terminase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50952336|gb|AAT90037.1| phage-related terminase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 467

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/336 (12%), Positives = 84/336 (25%), Gaps = 64/336 (19%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
            P+  Q   ++ +     +  N     +F+ A+ A R   KT       L  +   P   
Sbjct: 17  PPYPEQQLILDDLFALDVAEPNR--SAVFEQAVIAARQQLKTGFLKQAALGWLYVMPQPL 74

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           +I  A+     +   + ++   ++  P         L             +S+ +     
Sbjct: 75  VIWSAHEFGTAQEA-FRDMQALIASSPD--------LDRRVRKIRTAAGSESIEMKDGSR 125

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF-----------TEL 218
                  S              G  V  DEA      +  ++L              +  
Sbjct: 126 LRFKARTSGGG-------RGLTGSKVILDEAFALDAAMMGALLPTLISVPDPQVVYASSA 178

Query: 219 NPNRFWIMTSNTRRLNGWFYDIFN-----------------------IPLEDWKRYQIDT 255
              +  I+     R  G    +                           L+D   ++   
Sbjct: 179 GLAKSGILRGVRDRGCGGVDRMGYAEWLAQKRECASKVCNHAVGTPGCALDDKVLWRKAC 238

Query: 256 RTVEGIDSGFHEGIIS-RYGLDSDVARIEILGQFPQQEVNNFIPHNYI-----------E 303
                 D    + I + R  L  D    E LG + +   ++ I                 
Sbjct: 239 PISARKDPEQMQAIANLRMALPPDEFMRECLGWWDEPLGDSIIGEGLWRSLLVEDSTIDR 298

Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRG 339
            A + +   +     I+   +   G     +  R G
Sbjct: 299 AAFALDVSPERDWASIVVAGVNQYGRIHIEITSRDG 334


>gi|220905493|ref|YP_002480805.1| hypothetical protein Ddes_2231 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869792|gb|ACL50127.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 702

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 51/187 (27%), Gaps = 27/187 (14%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +WQ +    +                   I    G GKT + A    +L +  P  +I+
Sbjct: 187 DQWQKKAAIEIPEGSQR-------------IRGLAGSGKTVVLALKAAYLHTQHPEWNIV 233

Query: 112 CIANS---ETQLKNTLWA-------EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
              ++     Q+ + +         +   W  +     W       ++     +  +   
Sbjct: 234 VTYHTRSLYQQITDLIERFTFEHSGDKPDWGKLKVMHAWGSASEPGVYSEAAESLGVIPI 293

Query: 162 MGIDSKHYTITCRTYSEERPD---TFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218
               +K    T    S    +   +    +     A+  DEA   P    + +     E 
Sbjct: 294 NFALAKQKYGTKDALSGICEELLISMDETYKADYDAILIDEAQDLPISFFRMVYLMVKEP 353

Query: 219 NPNRFWI 225
               FW 
Sbjct: 354 -KRIFWA 359


>gi|323439023|gb|EGA96756.1| phiSLT ORF 563-like protein, terminase, large subunit
           [Staphylococcus aureus O11]
          Length = 406

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 49/347 (14%), Positives = 92/347 (26%), Gaps = 59/347 (17%)

Query: 22  AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81
            E V     F+   F    KG   +   QP  WQ   + ++    H           +  
Sbjct: 54  EELVHRPIRFIE-KFCKPSKGSKRQLVLQP--WQHFIIGSLFGWVHK--ETKLRRFKEAL 108

Query: 82  ISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
           I  GR  GKTT  + +  + +S     G  I  +AN   Q +  L+ E    +   P   
Sbjct: 109 IFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKASP--- 164

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                           +L +    +  + +     +    +          +      DE
Sbjct: 165 ----------------KLDKNFRTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDE 208

Query: 200 ASGTPD-IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT- 257
                D  +   I              +T+   +L+G   D+     +   +   D RT 
Sbjct: 209 IHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVDMVEAGRDTLDQIIEDERTF 268

Query: 258 --------------------------VEGIDSGFHEGIISRYGLDSDV--ARIEILGQFP 289
                                     V        E         ++      +    F 
Sbjct: 269 YYLASLDDDDDINDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFA 328

Query: 290 QQEVNNFIPHNYIEEAMSR-EAIDDLYAPLIMGCDIAGEGGDKTVVV 335
             +  +FI +  +++        +    P  +G D++    D T   
Sbjct: 329 NNDEMSFIDYPTLQKNNEIVSLEELEGRPCTIGYDLSET-EDFTAAC 374


>gi|300724886|ref|YP_003714211.1| putative terminase large subunit [Xenorhabdus nematophila ATCC
           19061]
 gi|297631428|emb|CBJ92125.1| putative terminase large subunit [Xenorhabdus nematophila ATCC
           19061]
          Length = 553

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/315 (12%), Positives = 71/315 (22%), Gaps = 54/315 (17%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
             WQ     A        V  +    ++ A I   R   K+T+ A +  W +    G   
Sbjct: 70  EPWQQ---FAFANLLGFKVKATGRRKYRSAYIQVPRKNAKSTVAAILANWFLVMEQGQQD 126

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           I  A         ++                     +   S     L ++      K   
Sbjct: 127 IYTAAVSRDQARIVF-------------------DDARQMSLLSKPLKKRVAIQQHKVTY 167

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
               +  +           T+      DE    PD    S L       P       +  
Sbjct: 168 PKTNSLLKPLAAKAATIEGTNPSLAIVDEYHLHPDNAVYSALELGMGARPEGLLFAITTA 227

Query: 231 RRLN----GWFYDIF-----------------------NIPLEDWKRYQIDTRTVEGIDS 263
                      YD                         +   ++    + +      +DS
Sbjct: 228 GNNVISACKQHYDYCCQILDGEEQNESLFALIYELDDEHEIDDETLWIKANPNLDVSVDS 287

Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQ--QEVNNFIPHNYIEEAMSREAIDD-LYAPLIM 320
                 I +           +  +F    Q    ++     +   S    +D        
Sbjct: 288 SALHDTIQKARGIPSQWTEMLTKRFNIWCQGETPWMGVGAWKACQSDYDENDLKGLECYA 347

Query: 321 GCDIAGEGGDKTVVV 335
           G D++  G D T + 
Sbjct: 348 GLDLSSTG-DITSIC 361


>gi|209559980|ref|YP_002286452.1| Large terminase [Streptococcus pyogenes NZ131]
 gi|209541181|gb|ACI61757.1| Large terminase [Streptococcus pyogenes NZ131]
          Length = 429

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 74/269 (27%), Gaps = 23/269 (8%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
             ++  +   RG  K+   A   +  +   P  +++ I       K + + +     + L
Sbjct: 27  NFYRV-VKGSRGSKKSKTTALNFIVRLLKYPWANLLVIRRYSNTNKQSTYTDFKWACNQL 85

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
              H F+                   + + +    I  R   +E   T +          
Sbjct: 86  KVTHLFKFNES------------LPEITVKATGQKILFRGLDDELKITSITVDVGLLCWA 133

Query: 196 FNDEASGTPDI-----INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NIPLED 247
           + +EA           + +SI G     +  +   +T N      W   +F        D
Sbjct: 134 WFEEAYQIETEDKFSTVVESIRGSLDAPDFFKQITVTFNPWSERHWLKRVFFDEETKRAD 193

Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
                   R  E +D          Y  +   ARI   G++   E   F     ++  + 
Sbjct: 194 TFSGTTTFRVNEWLDDVDKRRYEDLYKTNPRRARIVCDGEWGVAEGLVFDNFEVVDFDVE 253

Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
           +            G D        T++  
Sbjct: 254 KTIQRVKETS--AGMDFGFTQDPTTLICV 280


>gi|257064258|ref|YP_003143930.1| hypothetical protein Shel_15620 [Slackia heliotrinireducens DSM
           20476]
 gi|256791911|gb|ACV22581.1| hypothetical protein Shel_15620 [Slackia heliotrinireducens DSM
           20476]
          Length = 481

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 40/141 (28%), Gaps = 17/141 (12%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             I+  R  GK+       +W+ +   G  ++  A+    ++  ++ E+  ++       
Sbjct: 62  VGITKPRQNGKSFALRDYAMWMAAV-EGRCVLYTAHHGRTVRK-MFKEMCDFIEAHGD-- 117

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                        +  EL         +          E +  T  G        V  DE
Sbjct: 118 -------------FRDELDYVYKAGGYEGIYFKGGACIEFQTRTESGGRGGTYQIVVFDE 164

Query: 200 ASGTPDIINKSILGFFTELNP 220
           A        ++IL   +    
Sbjct: 165 AQQLTRAQQEAILPAVSAGGE 185


>gi|110804738|ref|YP_688258.1| putative bacteriophage protein [Shigella flexneri 5 str. 8401]
 gi|110614286|gb|ABF02953.1| putative bacteriophage protein [Shigella flexneri 5 str. 8401]
          Length = 255

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 295 NFIPHNYIEEAMSREAID--DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
             I  ++IE A+        +      +G D+A  G DK   V+R G+++    +W AK
Sbjct: 10  AIIKLSWIEAAVDAHKTLNFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAK 68


>gi|24112089|ref|NP_706599.1| putative bacteriophage protein [Shigella flexneri 2a str. 301]
 gi|30062202|ref|NP_836373.1| putative bacteriophage protein [Shigella flexneri 2a str. 2457T]
 gi|24050918|gb|AAN42306.1| putative bacteriophage protein [Shigella flexneri 2a str. 301]
 gi|30040447|gb|AAP16179.1| putative bacteriophage protein [Shigella flexneri 2a str. 2457T]
 gi|281600053|gb|ADA73037.1| putative bacteriophage protein [Shigella flexneri 2002017]
 gi|332768291|gb|EGJ98476.1| hypothetical protein SF293071_0835 [Shigella flexneri 2930-71]
          Length = 179

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 295 NFIPHNYIEEAMSREAID--DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
             I  ++IE A+        +      +G D+A  G DK   V+R G+++    +W AK
Sbjct: 10  AIIKLSWIEAAVDAHKTLNFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAK 68


>gi|71281314|ref|YP_270050.1| putative helicase [Colwellia psychrerythraea 34H]
 gi|71147054|gb|AAZ27527.1| putative helicase [Colwellia psychrerythraea 34H]
          Length = 1017

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 65/197 (32%), Gaps = 29/197 (14%)

Query: 40  IKGKPLEHFS-QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98
               P  +F  +PH  Q   +E +       V       ++  + A  G GKT ++A+  
Sbjct: 258 NPSTPSFYFDIKPHSHQQTILEKLQ------VERDLHNRYRNLVVAATGTGKTIISAFDF 311

Query: 99  LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
               +  P    + IA+ E  LK  L A    +  +L +  + E+   +  PS +     
Sbjct: 312 SRFYNANPEAKFLFIAHREEILKQALGA----YRGVLKNSTFGELWVGNNKPSKYQH--- 364

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218
                       +     S       +     +   +  DE         +++L  F+  
Sbjct: 365 ------------LFASIQSVNAQIETLALSEDYFDYIVIDEVHHISASSYRAVLKHFS-- 410

Query: 219 NPNRFWIMTSNTRRLNG 235
            P     +T+   R +G
Sbjct: 411 -PQILLGLTATPERHDG 426


>gi|306829027|ref|ZP_07462218.1| conserved hypothetical protein [Streptococcus mitis ATCC 6249]
 gi|304428832|gb|EFM31921.1| conserved hypothetical protein [Streptococcus mitis ATCC 6249]
          Length = 877

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/196 (11%), Positives = 57/196 (29%), Gaps = 30/196 (15%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            ++Q + ++    +      +         ++A  G GKTT+        +  R G   +
Sbjct: 11  RQYQKQVLDRFQDYQADGHVH--------LVAAP-GSGKTTIG-----IELIARFGNPAL 56

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +  +          E  +W+  +        Q +S   S    E+   ++      ++ 
Sbjct: 57  ILVPT------VTIRE--QWVERIQTAFLENEQKISDLVSQNLKEMKALTIVTYQAFHSA 108

Query: 172 TCRTYSEERPDTFVG--------PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
             +  S+E  +                    +  DE     +   KS+  F  +    + 
Sbjct: 109 MNQLQSQEDGEVEDFVGFDLLASLRAQKVATLCLDECHHLRNEWWKSLEAFRKQYGQLKL 168

Query: 224 WIMTSNTRRLNGWFYD 239
             +T+     +     
Sbjct: 169 ISLTATPPYDSDPELW 184


>gi|167640828|ref|ZP_02399087.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
           anthracis str. A0193]
 gi|170707219|ref|ZP_02897675.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
           anthracis str. A0389]
 gi|177654980|ref|ZP_02936674.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
           anthracis str. A0174]
 gi|190567486|ref|ZP_03020399.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
           anthracis Tsiankovskii-I]
 gi|227816663|ref|YP_002816672.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
           anthracis str. CDC 684]
 gi|167511222|gb|EDR86609.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
           anthracis str. A0193]
 gi|170127997|gb|EDS96868.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
           anthracis str. A0389]
 gi|172080365|gb|EDT65453.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
           anthracis str. A0174]
 gi|190561273|gb|EDV15245.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
           anthracis Tsiankovskii-I]
 gi|227003527|gb|ACP13270.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
           anthracis str. CDC 684]
          Length = 504

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 59/205 (28%), Gaps = 26/205 (12%)

Query: 36  FPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95
           F    KGK          WQ  F+ ++    H              ++  R  GK+TL++
Sbjct: 7   FCKHSKGKWAGKPIDLELWQKAFIGSLFGFIHKIDGTRKYREALLIVA--RKNGKSTLSS 64

Query: 96  WMMLWL--ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
            + L+L       G  +  +A  E Q K  +W+E  + +   P         LS      
Sbjct: 65  GICLYLQIADGEGGAEVYAVATKEKQAK-IVWSEAKRMVKKSPV--------LSKRIKAL 115

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK--SI 211
             EL         +       T            H         DE     D       +
Sbjct: 116 VKELNADFNDSTFQPVGSDSDTLDGLN------VHGAS-----LDEIHAWKDKNLYDVIV 164

Query: 212 LGFFTELNPNRFWIMTSNTRRLNGW 236
            G      P    I T+ T R + +
Sbjct: 165 DGTSAREQPLILMITTAGTVRESVY 189


>gi|149909656|ref|ZP_01898309.1| putative bacteriophage terminase, ATPase subunit [Moritella sp.
           PE36]
 gi|149807360|gb|EDM67313.1| putative bacteriophage terminase, ATPase subunit [Moritella sp.
           PE36]
          Length = 601

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/327 (12%), Positives = 84/327 (25%), Gaps = 76/327 (23%)

Query: 56  LEFMEAVDVHCHSNVN----NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            E ++ +  +                 +  I   R IG T   A+   +         I 
Sbjct: 146 KEMLDELKDNLLYPHQLHWFEHQDYRSRF-ILKPRQIGATFYFAFEAFYDAVVNGRNKIF 204

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A S  Q +       +  +++   +   E+    L          + +          
Sbjct: 205 ISA-SRDQAEIF----KANIIALCREQFGIELSGSPLTMRNKG----KTTTLYFKSTNAR 255

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSN 229
           T ++ S +               ++ DE    P    +        T  +        S 
Sbjct: 256 TAQSASGD---------------LYIDEVFWIPKFKELRSLAQAMATHKDFRI--TYFST 298

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI----- 284
               +   YD++N     W R        E       + +      D  + R ++     
Sbjct: 299 PSVTSHEAYDLWN---GRWYRKTKACNDPEFAIDVSRKTLKHGLLCDDGIWRQKLNVYDV 355

Query: 285 -------------LGQFPQQEVNNFIPHNYIEEAMS----------------------RE 309
                          ++ ++E +N     +I++A S                        
Sbjct: 356 VEQGFDRIDISMLENEYSKEEFDNLFMCKFIDDAHSAFSLKQLMACVGNSKKWTDFDPTW 415

Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVF 336
           +      P+++G D A      +VVV 
Sbjct: 416 SRPYAMKPVVIGFDPARTRDIASVVVL 442


>gi|116620817|ref|YP_822973.1| type III restriction enzyme, res subunit [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116223979|gb|ABJ82688.1| type III restriction enzyme, res subunit [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 570

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/288 (11%), Positives = 73/288 (25%), Gaps = 46/288 (15%)

Query: 52  HRWQLEFMEAVDV-HCHSNVNNSNPTIFKCAISAGR---------GIGKTTLNAWMMLWL 101
            RW+      V          ++  +I + A+S  R         G+GKT + A     +
Sbjct: 125 RRWEKLADRPVATRQLRGYQESAIASILEVAVSGKRRSALVVMATGLGKTFVAAESYRRM 184

Query: 102 ISTRPGMSIICIANSET---QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
             T P +  + +A++     QL+   W  + K             +   +          
Sbjct: 185 RETHPTLRALVLAHTNDLVYQLERAFWPCLDK------------SEITGVW-----NGYE 227

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT-- 216
                       I       +               V  DE         + +L      
Sbjct: 228 VPDPEASLTFACIDSVASKLQVSGRLDL----GVDLVIVDECHHAGSDEYRVVLEALRCG 283

Query: 217 ELNPNRFWIMTSNTRRLNGW-FYDIFNIPLEDWKRY---QIDT-RTVEGIDSGFHEGIIS 271
             +      MT+   R +G   + +F  P+         ++     V+      +     
Sbjct: 284 SQDGPFLIGMTATPWRPDGTSIHSLFGEPVSCVDIVQGLKMGWLSNVDYRMHVDNINWQE 343

Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319
              +     R      F Q+  +       +++             ++
Sbjct: 344 LNRVHHLTPRGLNRTIFIQEWDDAV-----VQKLKETWYEIPHARAIV 386


>gi|261342719|ref|ZP_05970577.1| putative phage terminase, large subunit [Enterobacter cancerogenus
           ATCC 35316]
 gi|288315373|gb|EFC54311.1| putative phage terminase, large subunit [Enterobacter cancerogenus
           ATCC 35316]
          Length = 553

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/256 (10%), Positives = 52/256 (20%), Gaps = 26/256 (10%)

Query: 29  KNFVMRFFPWGIKGKPLEH-FSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRG 87
           + F+           PL     +   WQ      +    +S       +     +   R 
Sbjct: 46  ERFIAFSRLCPHVKGPLRGQPIELEPWQQFAFANLLGFKNSESGRRKYSSAFIEV--PRK 103

Query: 88  IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
             K+T+ A +  W +    G   I  A         ++                     +
Sbjct: 104 NAKSTVAAMLANWFLVMEKGQQDIYTAAVSRDQARIVF-------------------DDA 144

Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207
                    L ++      K       +  +           T+      DE    PD  
Sbjct: 145 RQMCLLSKPLKKRVNIQAHKVIFPKSNSLLKPLAAKAATIEGTNPSLAIVDEYHLHPDNG 204

Query: 208 NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267
             S L       P       +                  D+    +              
Sbjct: 205 VYSALELGMGARPEAILFAITTAGSNVVSACKQHY----DYCCQILAGEESNDSLFVLIY 260

Query: 268 GIISRYGLDSDVARIE 283
            +     ++     I+
Sbjct: 261 ELDDESEVEQPEMWIK 276


>gi|301310332|ref|ZP_07216271.1| phage terminase, large subunit, PBSX family [Bacteroides sp. 20_3]
 gi|300831906|gb|EFK62537.1| phage terminase, large subunit, PBSX family [Bacteroides sp. 20_3]
          Length = 422

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/300 (11%), Positives = 79/300 (26%), Gaps = 41/300 (13%)

Query: 62  VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM--LWLISTRPGM---SIICIANS 116
           +    + +    +   F   I+ GRG GK+   +  +  L    T        I+    +
Sbjct: 2   IVPQENYHPLYEDKEKFIILITGGRGSGKSFNASTFIERLTFEMTEAEKIVHQILYTRYT 61

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
                 ++  E+ + + +     +F+     +      + ++ + +   S + T   ++ 
Sbjct: 62  MVSAGMSIIPEMMEKIDLDGTTKYFKTTKTDIVNKMTKSRIMFRGIKTSSGNQTAKLKSI 121

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
                                             I+    +       I+  N    N +
Sbjct: 122 QGITTFVCDEAEEWTNE------------EEFDKIMLSIRKKGIQNRIIIIMNPCDSNHF 169

Query: 237 FYDIFNIPLE---DWKRYQIDTRTVEGI--------------DSGFHEGIISRYGLDSDV 279
            Y  +        +    Q+   T   +                 F + +      + + 
Sbjct: 170 IYQKYIEKTHKLVEIDGVQVQISTHPNVLHIHTTYFDNLENLSPEFLKEVGDMKVNNPEK 229

Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRG 339
               ++GQ+             I +   RE        + +G D  G   D +    R G
Sbjct: 230 YAHVVIGQWADVAEGAVFKKWGIVKEFPRECK-----KVGIGQDF-GFTNDPSA-AVRCG 282


>gi|167821749|ref|ZP_02453429.1| phage terminase, large subunit, putative [Burkholderia pseudomallei
           91]
          Length = 529

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/315 (10%), Positives = 80/315 (25%), Gaps = 57/315 (18%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           +G  +    +   +Q EF+ ++  + H             +I+  R  GK+ + A ++L 
Sbjct: 36  EGALVGQPIRFEEFQREFIVSIYDNPHGTRRAY------LSIA--RKNGKSAVIACILLA 87

Query: 101 LISTRP---GMSIICIANSETQLKNTLWAEVSKWLSMLPH-RHWFEMQSLSLHPSGWYAE 156
            +          I+  A S  Q    ++   +K + + P       +   +    G    
Sbjct: 88  HLIGPEAKLNSQIVSGAMSRDQAA-LVFNLAAKMVQLSPEIAPLVRINPSAKKLVGLPLN 146

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGF 214
           +  +++  ++K                    H    +    DE      P       +  
Sbjct: 147 VEYKALSAEAKTT------------------HGLSPVLAILDEIGQIRGPQDDFIDAVTT 188

Query: 215 FTELNPNRFWIMTSN---------------TRRLNGWF--YDIFNIPLEDWKRYQIDTRT 257
               +     +  S                  + N       ++    +     +     
Sbjct: 189 SQGAHAEPLLVAISTQAANDADLLSVWIDDALKSNDPHIVCRLYAADQDAELMDRKAWAA 248

Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN-------FIPHNYIEEAMSREA 310
                  F             V    +   F    +N        FI  +  +    R  
Sbjct: 249 ANPALGVFRSEKDVEEQAKQAVRMPSVENTFRNLILNQRVSTVAPFISRDVWKSCGGRPL 308

Query: 311 IDDLYAPLIMGCDIA 325
             +    +  G D++
Sbjct: 309 EFEPSTQVFGGLDLS 323


>gi|168207201|ref|ZP_02633206.1| phage terminase, large subunit, pbsx family [Clostridium
           perfringens E str. JGS1987]
 gi|170661424|gb|EDT14107.1| phage terminase, large subunit, pbsx family [Clostridium
           perfringens E str. JGS1987]
          Length = 427

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/227 (10%), Positives = 59/227 (25%), Gaps = 38/227 (16%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           +  G G  K+      ++  +        + +      ++++ +  + +    +      
Sbjct: 26  LVGGYGSSKSFHVGIKLIKKLFE-EKRKALVVREVFDTIRDSCFDLLEEIAIGMGVYDSM 84

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
           E  S  +             +   +    I       ++P      +      ++ +E S
Sbjct: 85  EFISSPM------------QIRFPNGSKIIFKGM---DKPAKLKSING--VSIIWIEECS 127

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI-FNIPLEDWKR---------- 250
                  K +LG       +   I+++N      W Y   F      +            
Sbjct: 128 EVKYAGFKELLGRLRHPTLSNHIILSTNPVSKGNWSYKHFFQDKRNHFFVLDDEELYIKK 187

Query: 251 ---------YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
                    +             + E +      D D+ RI   G+F
Sbjct: 188 NIIIKNTYYHHSTVDDNFFAPKEYIEQLDELKLHDPDLWRIARKGRF 234


>gi|38638405|ref|NP_943780.1| gp2 [Mycobacterium phage PG1]
 gi|109391848|ref|YP_655098.1| gp2 [Mycobacterium phage Orion]
 gi|206600292|ref|YP_002241312.1| gp2 [Mycobacterium phage Chah]
 gi|33334020|gb|AAQ12079.1| gp2 [Mycobacterium phage PG1]
 gi|88910390|gb|ABD58318.1| gp2 [Mycobacterium phage Orion]
 gi|206287380|gb|ACI12722.1| gp2 [Mycobacterium phage Chah]
 gi|282721485|gb|ADA83932.1| gp2 [Mycobacterium phage Scoot17C]
          Length = 595

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 48/370 (12%), Positives = 86/370 (23%), Gaps = 51/370 (13%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + +  S   + +  +   L  A+   S K  V    P       L     P+      +E
Sbjct: 40  LEQARSWSTEQKHAMLASLRAAKARASMK--VKYAHP-----AELAAALDPNYVVTPAIE 92

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +       +   +P      IS     GK+TL A               I +A     L
Sbjct: 93  LISTSIERVLT--SPKQINLEISMPPQEGKSTLAAVATPLRALQHNPHRKIILATYALDL 150

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
             T    + +W+          +  L +         L+ + G +               
Sbjct: 151 AETHSRTMREWIETYGTDVVDPLTGLPVEDKIG----LKLARGANKVTAWSVAGGRGGLV 206

Query: 181 PDT-FVGPHNTHGMAVFND-------EASGT-----PDIINKSILGFFTELNPNRFWIMT 227
                          +  D       EA         D    S+       + +   I T
Sbjct: 207 AAGIGSRLTGMPADLMIIDDPFKNMMEADSALYRKRVDEWFSSVARTRLAPDASIIMIQT 266

Query: 228 S-NTRRLNG---WFYDIFNIPLEDWKRYQIDTRT-------------VEGIDSGFHEGII 270
             +   L G               W+   I                    + +       
Sbjct: 267 RWHPEDLAGKVIAAERSLPRNERTWRVINIPAIAEKGIPDALKREPGTPMVSARDTPEAK 326

Query: 271 SRYGL-----DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
             +                 G  P+          + +     EA  + Y  ++ G D A
Sbjct: 327 RNFPKIRREVGERTWYALYQGS-PRNPEGGIFQQKWFDATRLPEAPLNPYTAVV-GIDPA 384

Query: 326 GEG-GDKTVV 334
             G GD+  +
Sbjct: 385 DSGEGDEAGI 394


>gi|19746248|ref|NP_607384.1| terminase, large subunit [Streptococcus pyogenes MGAS8232]
 gi|19748434|gb|AAL97883.1| putative terminase, large subunit [Streptococcus pyogenes MGAS8232]
          Length = 431

 Score = 48.8 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 75/269 (27%), Gaps = 23/269 (8%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
             ++  +   RG  K+   A   +  +   P  +++ I       K + + +     + L
Sbjct: 29  NFYRV-VKGSRGSKKSKTTALNFIVRLLKYPWANLLVIRRYSNTNKQSTYTDFKWACNQL 87

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
              H F+                   + + +    I  R   +E   T +          
Sbjct: 88  KVSHLFKFNES------------LPEITVKATGQKILFRGLDDELKITSITVDVGALCWA 135

Query: 196 FNDEASGTPDI-----INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NIPLED 247
           + +EA           + +SI G     +  +   +T N      W   +F        D
Sbjct: 136 WFEEAYQIETEDKFSTVVESIRGTSDVPDFFKQITVTFNPWSERHWLKRVFFDEETKRAD 195

Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
                   R  E +D          Y  +   ARI   G++   E   F     ++  + 
Sbjct: 196 TFSGTTTFRVNEWLDDVDKRRYEDLYKTNPRRARIVCDGEWGVAEGLVFDNFEVVDFDVE 255

Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
           +         +  G D        T++  
Sbjct: 256 KTIQRVKETSV--GMDFGFTQDPTTLICV 282


>gi|225158171|ref|ZP_03725066.1| hypothetical protein ObacDRAFT_7916 [Opitutaceae bacterium TAV2]
 gi|224802675|gb|EEG20929.1| hypothetical protein ObacDRAFT_7916 [Opitutaceae bacterium TAV2]
          Length = 304

 Score = 48.8 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/267 (13%), Positives = 65/267 (24%), Gaps = 38/267 (14%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
            + + A    R  GK+ L +   L  +   PG+    I+ +       +  E   W   L
Sbjct: 23  PLRRLAYVWRRQGGKSYLLSNEALDWMMETPGVLTSIISAAIALGTEIIVKEAQSWREHL 82

Query: 136 P--------HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187
                         E  + ++   G+        +     H   TC       P      
Sbjct: 83  ARIKAVAAAADLKLETNADTIDFDGFCDLFEHSKLEAKLWHDRTTCSRTRVIAP-NPNTA 141

Query: 188 HNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI----- 240
               G  +  DE    P    + ++I  F       R  + T+       + Y++     
Sbjct: 142 VGWTGH-IIGDEFGRWPNCQDVLEAIEPFMESNPQFRLRLATTPPPDDAHYSYEMLLPKE 200

Query: 241 ----FNIPLEDWKR-------YQIDTRT---------VEGIDSGFHEGIISRYGLDSDVA 280
                     ++         +++D                 +            D    
Sbjct: 201 GTEFTPNARGNFYTSEYGLKIHRVDAWDAELAGKKMHHPDTGAKITPDEHRALAFDKTAW 260

Query: 281 RIEILGQFPQQEVNNFIPHNYIEEAMS 307
                 QF     +  I    I  AM 
Sbjct: 261 DRNYAIQFIAGGTSA-ISLAAIFRAME 286


>gi|290894028|ref|ZP_06557002.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|290556372|gb|EFD89912.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
          Length = 587

 Score = 48.8 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/322 (13%), Positives = 91/322 (28%), Gaps = 63/322 (19%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTRP--GM 108
             WQ   + +V    H +        F+ A +  GR  GKT+L + +  +++      G 
Sbjct: 103 QPWQHFVVGSVFGWVHKDTGVR---RFREALVFLGRKNGKTSLISALSNYMMGYDEEQGA 159

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
           +I  +AN++ Q  N L+ +  + + M P                      ++++  D K 
Sbjct: 160 NIYVLANAKEQA-NILFEKTKEMVKMSP--------------RLAGKFKNQRNVIKDEKS 204

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPNRFWIMT 227
           ++      S+ R    +  H         DE        +   I              +T
Sbjct: 205 FSKMEARASDSRKLDGLNTH-----FAIFDEIHEFVNFKLINVIKKSRAARRQPLLMYIT 259

Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRT------------------------VEG--- 260
           +    L+G         L+     Q                                   
Sbjct: 260 TAGYILDGPLMQYIENALDCAAHMQDTLNERVFYFIAKLDNVQEADDPKMWLKSNPNLLL 319

Query: 261 -----IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE-AMSREAIDDL 314
                + + +             + +   L  F   +  +++    I++     +     
Sbjct: 320 MNFVDLVADWLTERRIPEERADWITKQFNL--FSNIDELSYVDMPTIDKNNKQVDLATLQ 377

Query: 315 YAPLIMGCDIAGEGGDKTVVVF 336
               I+G D++    D T VV 
Sbjct: 378 GKEAIIGYDLSET-EDFTAVVV 398


>gi|183981958|ref|YP_001850249.1| hypothetical protein MMAR_1945 [Mycobacterium marinum M]
 gi|183175284|gb|ACC40394.1| conserved hypothetical membrane protein [Mycobacterium marinum M]
          Length = 587

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/278 (11%), Positives = 73/278 (26%), Gaps = 34/278 (12%)

Query: 79  KCAISAGRGIGKTTLNAWMM-LWLISTRPGMSIICIANSETQLKN---TLWAEVSKWLSM 134
           +  ++     GK+ L + +  +W +S  P   II  +  +   +         ++    +
Sbjct: 61  RLIVTMPPRTGKSVLVSQVFPVWQLSRDPDAEIIVKSYGDALAEEHSAAARRLIADNAGV 120

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
           +      + Q++       +   +     + S           ++         +     
Sbjct: 121 VGIELAADKQAVGRWRVAGHRGGMLAGGILSSTTGFGANVLVVDDPVKGAQEADSDAYRR 180

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254
               E         K+ L        +   ++       +     +   P   W+   I 
Sbjct: 181 RLIAE--------FKASLMTRLMPGASVIIVL--TRWHTDDLAGALLAEPGSRWRCVNIP 230

Query: 255 TRTVEGIDSGFHEGIISRYGLD-----------------SDVARIEILGQFPQQEVNNFI 297
             +  G+                                S       LG  P+      I
Sbjct: 231 AISTAGVPDALQRDRSGVAMTSAVGRTAPQFREIAAEVGSRAWAAMYLGT-PRTPEGGLI 289

Query: 298 PHNYIEEAMSREAIDDLYAPLIMGCDIAGEG-GDKTVV 334
              +IE+     A       +++G D A  G GD+T +
Sbjct: 290 KAAWIED-WRLPAAPPGAVKIVVGVDPADSGKGDETGI 326


>gi|146277413|ref|YP_001167572.1| phage terminase [Rhodobacter sphaeroides ATCC 17025]
 gi|145555654|gb|ABP70267.1| phage Terminase [Rhodobacter sphaeroides ATCC 17025]
          Length = 535

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/341 (13%), Positives = 94/341 (27%), Gaps = 68/341 (19%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS---TRPGM 108
             WQ   +  +    H +       +        RG  KT+L A + +  +      PG 
Sbjct: 45  DPWQERIIRRIYGPRHPDGTRVVRRVVL---LLPRGNRKTSLCAALTILHLIGPEREPGG 101

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            I+  A +  Q    L+ E +  +                         L       S+ 
Sbjct: 102 LIVSAAAAHEQAME-LFNEAALIIQH-----------------DGRLRDLLSVREYVSRI 143

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD----IINKSILGFFTELNPNRFW 224
                 T            H      V  DE             +++     ++      
Sbjct: 144 SFPKMGTRYVAVASDGKVQHGKTPNVVIADELHAWEGRAGLRQWEALDSALVKVPGTLMV 203

Query: 225 IMTSNTRRLNGWFYD----------------------IFNIPLEDWKR----------YQ 252
           + +++ R      +                           P +DW              
Sbjct: 204 VASTSGRGQENLAWQTVDYAIKVQKGEIDDPATLPVVFMAEPEDDWNDEEVWQAVNPGLA 263

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE---AMSRE 309
                ++G      + + S +  DS       L ++  Q  + F+     +E   A+  +
Sbjct: 264 YGYPDIDGFRDKARKAVHSPFERDS--FLQFNLNRWLDQTTSPFVEMPVYDEGASAVDLD 321

Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVV--VFRRGNIIEHIFDW 348
            +D + AP  +G D++ +  D T +   ++ G+    ++ W
Sbjct: 322 ELDMVQAPCWLGVDLS-KNEDLTCIVAAWQDGDDGYQVYPW 361


>gi|326562754|gb|EGE13053.1| terminase [Moraxella catarrhalis 103P14B1]
          Length = 564

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/306 (8%), Positives = 68/306 (22%), Gaps = 54/306 (17%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
             WQ+                      K  I   R  GK+ + A +  ++       G  
Sbjct: 83  ESWQIFACCLPFGWIKRATG--FRRYTKILIFVCRKNGKSAIAAGIGNYMFCADGEFGAE 140

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           +   A +E Q                  + ++ ++  + + +        + +       
Sbjct: 141 VYSGATTEKQAWEVFRPAKIMVERTKALKDFYGIEVNASNMARLADGSRFEPIIGKPGD- 199

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPNRFWIMTS 228
                               +       DE      + +  ++             ++T+
Sbjct: 200 -------------------GSSPSCAIIDEYHEHKNNDLYDTMETGMGAREQPIMLVITT 240

Query: 229 NTRRLNGWFYDIFNIPL----------------------EDWKRYQIDTRTVEGIDSGFH 266
               + G  + +                           +DW       +    +D    
Sbjct: 241 AGSSIGGACHQMVRDAEKMLDGVMDIPDLWAVLYGMDKDDDWTSEIALKKANPNMDISVS 300

Query: 267 EGIISRYGLD-------SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319
              +     D         + R + L ++   +        +   A           P  
Sbjct: 301 AEFLQARQRDAKMSAAKQAIFRTKHLNEWVGAKNAWLNMAKWANGAKRLPLSALTGRPCF 360

Query: 320 MGCDIA 325
           +G D+A
Sbjct: 361 IGLDLA 366


>gi|323442650|gb|EGB00278.1| terminase large subunit [Staphylococcus aureus O46]
          Length = 563

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 90/348 (25%), Gaps = 60/348 (17%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
             WQ   + ++    H           +  I  GR  GKTT  + +  + +S     G  
Sbjct: 81  QPWQHFIIGSLFGWVHK--ETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAE 138

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I  +AN   Q +  L+ E    +   P                   +L E    +  + +
Sbjct: 139 IHLLANVMKQAR-ILFDESKAMIKASP-------------------KLRENFRPLRDEIH 178

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTS 228
                +    +          +      DE     D  +   I              +T+
Sbjct: 179 YDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITT 238

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRT----------------------VEG----ID 262
              +L+G   D+     +   +   D RT                             ID
Sbjct: 239 AGYQLDGPLVDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSID 298

Query: 263 SGFHEGIISRYGLDSDV---ARIEILGQFPQQEVNNFIPHNYIEEAMSR-EAIDDLYAPL 318
               +    +     D       +    F      +FI +  +++        +    P 
Sbjct: 299 LDEMKEEWEKAKRTPDERGDFITKRFNIFANNNEMSFIDYPTLQKNNEIVSLEELEGRPC 358

Query: 319 IMGCDIAGEGGDKTV----VVFRRGNIIEHIFDWSAKLIQETNQEGCP 362
            +G D++    D T          G +      W  K   E + E  P
Sbjct: 359 TIGYDLSET-EDFTAACATFALDNGKVAVLTHSWIPKHKVEYSNEKIP 405


>gi|226313130|ref|YP_002773024.1| hypothetical protein BBR47_35430 [Brevibacillus brevis NBRC 100599]
 gi|226096078|dbj|BAH44520.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 469

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 71/272 (26%), Gaps = 31/272 (11%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLS 133
                 ++ GR  GKT + A      I +       +        ++       +  W  
Sbjct: 27  DARNVVMNCGRRGGKTNVGARKFFDKILSDIEADKGLPYKPPRNLKVMKKPKPRLEYWC- 85

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
           + P     E+Q   L        +    +   ++ +         +  D           
Sbjct: 86  VSPTYSMSEIQQEELGAVIPEEMIESWDL-SKNRVWLKGYILIQFKSADNPKTLVGKGLD 144

Query: 194 AVFNDEASGTPDIINKS-ILGFFTELNPNRFWIMTSNTRRLNGWFY-------------- 238
            V+ DEAS   +      +     +      W + + T     WFY              
Sbjct: 145 GVWLDEASKMKEQTWSGYLSYALADKGG---WSVWTTTPEGMNWFYHDIVLNGQHTQAGG 201

Query: 239 -DIFNIPLEDWKRYQIDTRTVEGIDSGF-----HEGIISRYGLDSDVARIEI-LGQFPQQ 291
                    +W  +   ++     +         E +  RY      AR ++  GQ  ++
Sbjct: 202 QLDEYRNDPEWCNFYWTSKDNPLPELQKNIQRMIETMPKRYVDREIFARFDVFFGQVYEE 261

Query: 292 EVNN--FIPHNYIEEAMSREAIDDLYAPLIMG 321
              +   +P    E+         + A    G
Sbjct: 262 FDRSIHVVPRALCEQKFKDGHFVHIEAGKDWG 293


>gi|326575949|gb|EGE25872.1| phage terminase, large subunit, putative [Moraxella catarrhalis
           CO72]
          Length = 564

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/306 (8%), Positives = 68/306 (22%), Gaps = 54/306 (17%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
             WQ+                      K  I   R  GK+ + A +  ++       G  
Sbjct: 83  ESWQIFACCLPFGWIKRATG--FRRYTKILIFVCRKNGKSAIAAGIGNYMFCADGEFGAE 140

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           +   A +E Q                  + ++ ++  + + +        + +       
Sbjct: 141 VYSGATTEKQAWEVFRPAKIMVERTKALKDFYGIEVNASNMARLADGSRFEPIIGKPGD- 199

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPNRFWIMTS 228
                               +       DE      + +  ++             ++T+
Sbjct: 200 -------------------GSSPSCAIIDEYHEHKNNDLYDTMETGMGAREQPIMLVITT 240

Query: 229 NTRRLNGWFYDIFNIPL----------------------EDWKRYQIDTRTVEGIDSGFH 266
               + G  + +                           +DW       +     D    
Sbjct: 241 AGSSIGGACHQMVRDAEKMLDGVMDIPDLWAVLYGMDKDDDWTSEIALAKANPNYDISVS 300

Query: 267 EGIISRYGLD-------SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319
              +     D         + R + L ++   +        + +     E  +       
Sbjct: 301 GEFLKARQRDAIASSSKQAIFRTKHLNEWVGAKNAWMNMAKWRDAPKRCELKELEGRKCF 360

Query: 320 MGCDIA 325
           +G D+A
Sbjct: 361 IGLDLA 366


>gi|323491504|ref|ZP_08096686.1| ATP-dependent RNA helicase SrmB [Vibrio brasiliensis LMG 20546]
 gi|323314258|gb|EGA67340.1| ATP-dependent RNA helicase SrmB [Vibrio brasiliensis LMG 20546]
          Length = 411

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/316 (13%), Positives = 82/316 (25%), Gaps = 50/316 (15%)

Query: 43  KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102
                + +P + Q E +                       SA  G GKT   A   L  +
Sbjct: 18  IEEMGYDRPTQIQAEAIPQALDG------------RDVLASAPTGTGKTAAFALPALQFL 65

Query: 103 STRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
              P        ++ +  +         A+ ++ L+   + + F +     +        
Sbjct: 66  QDFPRRKPGPARVLILTPTRELAMQV--ADQARALAKHTNLNIFTITGGVQYQEHADILA 123

Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217
             Q +        +                       +  DEA    D+     +   + 
Sbjct: 124 TTQDI--------VVATPGRLMEYIEAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSS 175

Query: 218 LNPNRFWIMTSNTR----RLNGWFYDIFNIP---------LEDWKRYQIDTRTVEGIDS- 263
               R   +  +       + G+  D+   P          E  K  Q   R  +     
Sbjct: 176 ECRWRKQTLLFSATLEGKGVEGFTADLLKDPAEIDAEPSRRERKKIAQWYHRADDMTHKL 235

Query: 264 GFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AIDDL 314
              + I++     S V     E L +   +     IP  +I  E    R         D 
Sbjct: 236 ELLKKILTEQAERSIVFLKTRERLAELRTELEKAQIPCAWIQGEMPQDRRNNAIARFRDG 295

Query: 315 YAPLIMGCDIAGEGGD 330
              +++  D+A  G D
Sbjct: 296 TVNVLLATDVAARGID 311


>gi|170683362|ref|YP_001743036.1| putative phage terminase, large subunit [Escherichia coli SMS-3-5]
 gi|170521080|gb|ACB19258.1| putative phage terminase, large subunit [Escherichia coli SMS-3-5]
 gi|323977725|gb|EGB72811.1| phage Terminase [Escherichia coli TW10509]
          Length = 553

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/277 (12%), Positives = 61/277 (22%), Gaps = 29/277 (10%)

Query: 7   TDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHC 66
               LE  L+      E V  F  F        +KG       +   WQ      +    
Sbjct: 29  YFSDLENSLYTF--DPEVVERFIAFSRV--CPHVKGAMRGSPIELEPWQQFAFACILGFK 84

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126
                    T     +   R   K+T+ A +  W +    G   I  A         ++ 
Sbjct: 85  VKATGRRKYTSAFIEV--PRKNAKSTVAAILANWFLVMENGQQDIYTAAVSRDQARIVFD 142

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
           +  +             + L    +    +++        K       T     P     
Sbjct: 143 DARQMC--------LLSRPLRKRVNIQAHKVIHPKTNSLLKPLAAKAATIEGTNPS---- 190

Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246
                      DE    PD    S L       P       + +                
Sbjct: 191 -------LAIVDEYHLHPDNGVYSALELGMGARPEGLLFAITTSGSNVVSACKQHY---- 239

Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283
           D+    +D   V          +     +D     I+
Sbjct: 240 DYCCQILDGEEVNESMFVLIYELDDESEVDDPAMWIK 276


>gi|153856198|ref|ZP_01996980.1| hypothetical protein DORLON_03013 [Dorea longicatena DSM 13814]
 gi|149751703|gb|EDM61634.1| hypothetical protein DORLON_03013 [Dorea longicatena DSM 13814]
          Length = 439

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 48/178 (26%), Gaps = 7/178 (3%)

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GMSIICIANSETQLK 121
                +  S        +    G  KT  +  + L  +   P      I+    +    +
Sbjct: 224 FLQEALMKSAEKAPLVIVKGMAGTAKTFYSLAVGLEKVLNNPTGEYRRILICRPNAQFDQ 283

Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
           +  +    +   + P      + +L         E  +    +  K   I  R   +   
Sbjct: 284 DIGFLPGDEQEKISPL-MRPIVDNLEQLIDSDEEERYQDEQELQGKIEEIFARGLIQTEA 342

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
             F+   +     +  DEA          + G  T        I+  +  +++  F D
Sbjct: 343 MNFIRGRSFVKTYLIIDEAQNMTPNQ---VKGIITRAGKGTKIILLGDPNQIDRPFLD 397


>gi|153855443|ref|ZP_01996574.1| hypothetical protein DORLON_02588 [Dorea longicatena DSM 13814]
 gi|149752097|gb|EDM62028.1| hypothetical protein DORLON_02588 [Dorea longicatena DSM 13814]
          Length = 456

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 48/178 (26%), Gaps = 7/178 (3%)

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GMSIICIANSETQLK 121
                +  S        +    G  KT  +  + L  +   P      I+    +    +
Sbjct: 241 FLQEALMKSAEKAPLVIVKGMAGTAKTFYSLAVGLEKVLNNPTGEYRRILICRPNAQFDQ 300

Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
           +  +    +   + P      + +L         E  +    +  K   I  R   +   
Sbjct: 301 DIGFLPGDEQEKISPL-MRPIVDNLEQLIDSDEEERYQDEQELQGKIEEIFARGLIQTEA 359

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
             F+   +     +  DEA          + G  T        I+  +  +++  F D
Sbjct: 360 MNFIRGRSFVKTYLIIDEAQNMTPNQ---VKGIITRAGKGTKIILLGDPNQIDRPFLD 414


>gi|195498547|ref|XP_002096570.1| GE25739 [Drosophila yakuba]
 gi|194182671|gb|EDW96282.1| GE25739 [Drosophila yakuba]
          Length = 1495

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 56/211 (26%), Gaps = 11/211 (5%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              +    G+GKT + A +M       P   I+ +A +   +   + A       ++P  
Sbjct: 77  NTLVVLPTGLGKTFIAAVLMFNFYRWYPKGKIVFMAPTRPLVSQQIHASQK----IMPFP 132

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               +Q     P    AEL        +    +          D            +  D
Sbjct: 133 SADTVQLTGQLPRPKRAELWGSKRVFFATPQVVHS---DMLETDGGSTFPFESIKLIVVD 189

Query: 199 EAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLN--GWFYDIFNIPLEDWKRYQIDT 255
           EA           ++      N N   +  S T             N+ + + +     +
Sbjct: 190 EAHRAKGRYAYTQVVDCLMARNRNFRMLALSATPGRTMEDVAAVCQNLYISNLQVRWDTS 249

Query: 256 RTV-EGIDSGFHEGIISRYGLDSDVARIEIL 285
             V   I       I+         +R  +L
Sbjct: 250 IDVQPYIHRRTIRTIVVSLKERIKESRERLL 280


>gi|319792687|ref|YP_004154327.1| terminase large subunit protein [Variovorax paradoxus EPS]
 gi|315595150|gb|ADU36216.1| putative terminase large subunit protein [Variovorax paradoxus EPS]
          Length = 591

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/313 (12%), Positives = 70/313 (22%), Gaps = 74/313 (23%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           + AI   R +G TTL A + L             IA      +                +
Sbjct: 134 RNAILKARQLGFTTLIAILWLDHALFNGNQRCGMIAQDRETAEAIF-----------RDK 182

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
             F    L       +      +  +   H   + R  +  R  T    H          
Sbjct: 183 VVFAYDHLPEEIRQRFPLARASTKELLFGHNNSSIRVATSVRGGTIHRLH--------VS 234

Query: 199 EASGT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL--------- 245
           E        P   N+ + G F  +  +   ++ S      G FY+I              
Sbjct: 235 EFGKICAKFPAKANEVVTGSFQAVPLSGILVIESTAEGTEGEFYEICQRAQALVAGARKL 294

Query: 246 --EDWKRYQIDTRTVEGIDSG--------------------------------FHEGIIS 271
               ++ +                                             + E + +
Sbjct: 295 TPSQYRFHFYAWWQDPNYSIDPVGVPISPEQHDYFDELETKVDVKIDPAQRAWYVEKLRN 354

Query: 272 RYGLDSDVARIEI----LGQFPQQEVNNFIPHNYIEEAMSREAIDDL--YAPLIMGCDIA 325
            +    +    E        F Q    ++   + +                P+    DI 
Sbjct: 355 DFSGKEERMWQEYPSTPEEAFQQSTAGHYYAKDMVLLRKRGAICQVPLLDLPVFTFWDIG 414

Query: 326 GEGGDKTVVVFRR 338
               D T + F +
Sbjct: 415 N--SDGTAIWFMQ 425


>gi|296170231|ref|ZP_06851824.1| gp2 protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295895107|gb|EFG74825.1| gp2 protein [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 506

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/278 (11%), Positives = 77/278 (27%), Gaps = 34/278 (12%)

Query: 79  KCAISAGRGIGKTTLNAWMM-LWLISTRPGMSIICIANSETQLKN---TLWAEVSKWLSM 134
           +  ++     GK+ L + +  +WL+S  P   +I  +  +   +         +++ L++
Sbjct: 63  RLVVTMPPRTGKSVLTSQVFPVWLLSRDPDAEVIVKSYGDALAEEHSAAARRLIAENLAV 122

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
           +      + Q++       +   +     + S           ++         +     
Sbjct: 123 VGIELAADKQAVGRWRVAGHRGGMLAGGILSSTTGFGASVLLVDDPVKGAQEADSDAYRR 182

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254
               E         K+ L        +   ++       +     +   P   W+   I 
Sbjct: 183 RLTAE--------FKASLMTRLMPGASAIVVL--TRWHPDDLAGSLLAEPGSRWRCVNIP 232

Query: 255 TRTVEGIDSGFHEGI-----------------ISRYGLDSDVARIEILGQFPQQEVNNFI 297
             +  G+                           +  + S       LG  P       I
Sbjct: 233 AISTAGVPDALGRERSGVAMTSAVGRTAEQFREIKTEVGSRAWAAMYLGT-PTTPEGGLI 291

Query: 298 PHNYIEEAMSREAIDDLYAPLIMGCDIAGEG-GDKTVV 334
              +I+      A       +++G D A  G GD+T +
Sbjct: 292 KAAWIDT-WRLPAAPPGTVKIVVGVDPADSGEGDETGI 328


>gi|167757386|ref|ZP_02429513.1| hypothetical protein CLORAM_02936 [Clostridium ramosum DSM 1402]
 gi|167703561|gb|EDS18140.1| hypothetical protein CLORAM_02936 [Clostridium ramosum DSM 1402]
          Length = 431

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/256 (12%), Positives = 68/256 (26%), Gaps = 21/256 (8%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPG----MSIICIANSETQLKNTLWAEVSKWLSMLP 136
            +  GRG  K++     +   I          + + I   +  L+ +++ ++   + ML 
Sbjct: 31  WLKGGRGSLKSSFIGIEIPLGIMRDAQNGLMSNAVVIRRVKDTLRGSVYEQIKWGIYMLN 90

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
            +  +E+    L  +      +    G D+     + + +       +            
Sbjct: 91  AQEDWEIPESKLQMTYKPTGQVILFKGADNPKKLKSTKVFVGYVKYVW---------YEE 141

Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN-GWFYDIFNIPLEDWKRYQIDT 255
            DE      I  ++I        P      + N       W      I   D        
Sbjct: 142 CDEFESYDKI--RNINQSLLRGGPEYCVFYSFNPPESQRNWCNKQVLIKRPDTYISHTTY 199

Query: 256 RTVE--GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
                  +   F         ++ +    + LG+        F   +  E     +    
Sbjct: 200 LQAPREWLGEQFLIEAEHLKVINEEKYNHDYLGEVTGTGGEVFTNLDIRE---ISDDEIA 256

Query: 314 LYAPLIMGCDIAGEGG 329
           ++  L  G D    G 
Sbjct: 257 VFDRLKNGLDFGYAGD 272


>gi|108862025|ref|YP_654141.1| 40 [Enterobacteria phage K1-5]
 gi|40787111|gb|AAR90082.1| 40 [Enterobacteria phage K1-5]
          Length = 632

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/349 (14%), Positives = 102/349 (29%), Gaps = 80/349 (22%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT------LWA 126
                ++  I A RGI KTTL+A   ++ I   P   I+ ++ +  + +        ++ 
Sbjct: 62  FYGHKYRL-IEAPRGIAKTTLSAIYTVFRIIHEPHKRIMVVSQNAKRAEEIAGWVVKIFR 120

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM-----GIDSKHYTITCRTYSEERP 181
            +     MLP  +  +  S+      +     ++S       I++            +  
Sbjct: 121 GLDFLEFMLPDIYAGDRASVKAFEIHYTLRGSDKSPSVSCYSIEAGMQGARADIILADDV 180

Query: 182 DTFVGPHNTHGMAVFND---EASGT-----------PDIINKSILGFFTELNPNRFWIMT 227
           ++        G A+  +   E               P  +N             R W   
Sbjct: 181 ESMQNARTAAGRALLEELTKEFESINQFGDIIYLGTPQNVNSIYNNLPARGYSVRIWTAR 240

Query: 228 S-----------------------NTRRLNGWFYDIF---NIPLEDWKRYQIDTRTVEGI 261
                                   N    +G+  D         E +    +  + +   
Sbjct: 241 YPSVEQEQCYGDFLAPMIVQDMKDNPALRSGYGLDGNSGAPCAPEMYDDEVLIEKEISQG 300

Query: 262 DSGF-HEGIISRYGLDSDVARIEILG------------QFPQQEVNNFI----------- 297
            + F  + +++   +D+D   + +                P    ++             
Sbjct: 301 AAKFQLQFMLNTRMMDADRYPLRLNNLIFTSFGTEEVPVMPTWSNDSINIIGDAPKYGNK 360

Query: 298 PHNYIEEAMSREAIDDLYAPLIMGCDIAGEG--GDKT--VVVFRRGNII 342
           P +++   ++R       +  IM  D AG G  GD+T   +VF  G  I
Sbjct: 361 PTDFMYRPVARPYEWGAVSRKIMYIDPAGGGKNGDETGVAIVFLHGTFI 409


>gi|190886701|gb|ACE95266.1| M89 [Muromegalovirus G4]
 gi|190886866|gb|ACE95430.1| M89 [Muromegalovirus WP15B]
 gi|190887031|gb|ACE95594.1| M89 [Muromegalovirus C4A]
          Length = 671

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 45/161 (27%), Gaps = 17/161 (10%)

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124
           H  S+ +              R  GKT     ++ +L+    G+SI  +A+ +   +  L
Sbjct: 194 HFLSSQSIDLFKQKATVFLVPRRHGKTWFTIPVICFLLKNIIGISIGYVAHQKHVSQYVL 253

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
                +   M   R   E +   +                    + I   T         
Sbjct: 254 KEVEFRCKRMFSGRFMVENKDNVISV-----------------DHKIAKSTALFASCYNT 296

Query: 185 VGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225
                 +   +  DEA         +ILGF  +      +I
Sbjct: 297 NSIRGQNFNLLIVDEAHFIKKEAFNTILGFLAQNTTKIIFI 337


>gi|284921902|emb|CBG34977.1| prophage terminase, large subunit [Escherichia coli 042]
          Length = 553

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/262 (12%), Positives = 57/262 (21%), Gaps = 27/262 (10%)

Query: 22  AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81
            E V  F  F        +KG       +   WQ      +             T     
Sbjct: 42  PEVVERFIAFSRV--CPHVKGAMRGSPIELEPWQQFAFACILGFKVKATGRRKYTSAFIE 99

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           +   R   K+T+ A +  W +    G   I  A         ++ +  +           
Sbjct: 100 V--PRKNAKSTVAAILANWFLVMENGQQDIYTAAVSRDQARIVFDDARQMC--------L 149

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
             + L    +    +++        K       T     P                DE  
Sbjct: 150 LSRPLRKRVNIQAHKVIHPKTNSLLKPLAAKAATIEGTNPS-----------LAIVDEYH 198

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI 261
             PD    S L       P       + +                D+    +D   V   
Sbjct: 199 LHPDNGVYSALELGMGARPEGLLFAITTSGSNVVSACKQHY----DYCCQILDGEEVNES 254

Query: 262 DSGFHEGIISRYGLDSDVARIE 283
                  +     +D     I+
Sbjct: 255 MFVLIYELDDESEVDDPAMWIK 276


>gi|283788254|ref|YP_003368119.1| terminase large subunit [Citrobacter rodentium ICC168]
 gi|282951708|emb|CBG91409.1| putative terminase large subunit [Citrobacter rodentium ICC168]
          Length = 554

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 72/253 (28%), Gaps = 39/253 (15%)

Query: 86  RGIGKTTLNAWMMLWLIS---TRPGMSIICIANSETQLKNTL--WAEVSKWLSMLPHRHW 140
           R  G T   A   +   +    R G ++  + + +      +   A  S+  + L     
Sbjct: 67  RRTGLTWAEAGRNVITAAKPKRRGGRNVFYVGSKQEMALEYISACALFSRAFNQLADADV 126

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
           +E             E+L   +   +  + I   +     P    G        V  DEA
Sbjct: 127 YEQT---FWDRDKKEEILTYMIRFPNSGFKIQALSSR---PSNLRGLQGD----VVIDEA 176

Query: 201 SGTPDIINKSILGF--FTELNPNRFWIMTSN-TRRLNGWFYDIFNIPLEDWKRYQIDTRT 257
           +   + +++ +      T        I T N    L   +        +D+  ++I    
Sbjct: 177 AF-HESLDELLKAAMALTMWGARVRIISTHNGVDNLFNQYIQEAREGRKDYSVHRITLDD 235

Query: 258 ------------------VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299
                                 +  + + +        D    E     P++    +IPH
Sbjct: 236 AIADGLYRRICYVTDQEWSPESEQKWRDDLYKNAPTREDA-DEEYGCI-PKKSGGAYIPH 293

Query: 300 NYIEEAMSREAID 312
             IE AM R+   
Sbjct: 294 ALIEMAMIRDIPI 306


>gi|328869402|gb|EGG17780.1| hypothetical protein DFA_08780 [Dictyostelium fasciculatum]
          Length = 1683

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/207 (11%), Positives = 55/207 (26%), Gaps = 15/207 (7%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P  WQ + ++ VD H  +             +      GKT ++ +++  ++        
Sbjct: 793 PDAWQRDLLDVVDKHESA------------LVVCPTSSGKTFISFYILEKVLRESNDGMA 840

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           I ++ ++  +  T    + ++     +    +  +       +  +              
Sbjct: 841 IYVSPTKALVTQTYCEVIGRFDKSYDNICGKDSSAQYRMCGIFTRDYRIDEQKCQILITV 900

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
             C                     +  DE     +    +I      LN    ++  S T
Sbjct: 901 PQCLELLLLSVSNSNYLS--KIKYIIFDEVHQIANGTEGAIWESLLLLN-PGPFVALSAT 957

Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRT 257
               G F D         K + +    
Sbjct: 958 VGNTGEFKDWLQEIDPKRKIHLVQHSN 984


>gi|262403670|ref|ZP_06080228.1| phage protein [Vibrio sp. RC586]
 gi|262350174|gb|EEY99309.1| phage protein [Vibrio sp. RC586]
          Length = 550

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 48/381 (12%), Positives = 99/381 (25%), Gaps = 47/381 (12%)

Query: 9   QKLEQELHEMLMHAECVLSFKNF--------VMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           ++ ++E       A+    F  F            F            ++    Q E + 
Sbjct: 43  RQEKEEKARKKRRAKSKHDFSYFCQTYMPDAFTLVFSEYQLALTRLAANRNLNRQDEALF 102

Query: 61  A--VDVHCHSNVNNSNPTIFKCAI-SAGRGIGKTT-LNAWMMLWLISTRPGMSIICIANS 116
              +D   H  +       ++  +    R  GKTT     M LWL    PG  I+    S
Sbjct: 103 KELIDPRDHGFIKQPISGEYEGILDIEPRDHGKTTRNTQAMPLWLALNHPGSFIVICGAS 162

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
               K  +          +          L  +         ++ + + +    +     
Sbjct: 163 ADSAKEMM--------DAIKDDLEDNELILDDYGEQRGNTWTKRKIKLANGSSIVAVGRG 214

Query: 177 SEERPDTFVGPHNTHGMA--VFND---EASGTPDIINKSILGFFTELNPNRFWIMTSN-- 229
              R         TH +   + +D   E+        +        L      I+ +   
Sbjct: 215 QRLRGIKNKYQRPTHIICDDLLDDKEVESPTLRRQAERWFKRVIMNLGKGALTIIANTIM 274

Query: 230 -TRRLNGWFYDIFNIPL-EDWKRYQIDTRTV---EGIDSGF-HEGIISRYGLDSDVARIE 283
               L     +        +W   +    T        S +  + + ++          E
Sbjct: 275 HPDDLPSRLLNQIEDGRLPNWLGLRFSAITPSGRPLFPSRWSLQDLENKRIASGSAWWTE 334

Query: 284 ILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA-PLIMGCDIAGEG---GDKTVVVF--R 337
            + + P  + +     ++      +    DL    + M  D A  G   GD + +    R
Sbjct: 335 WMNR-PIADEDADFKEDWFV--YFKPYELDLRDCTIGMAVDPA-TGLKKGDWSFIAVVAR 390

Query: 338 R----GNIIEHIFDWSAKLIQ 354
                 + +     W    +Q
Sbjct: 391 HKITMVDHVLFAKGWKESDLQ 411


>gi|118576805|ref|YP_876548.1| superfamily II helicase [Cenarchaeum symbiosum A]
 gi|118195326|gb|ABK78244.1| superfamily II helicase [Cenarchaeum symbiosum A]
          Length = 614

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/264 (10%), Positives = 64/264 (24%), Gaps = 31/264 (11%)

Query: 40  IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99
            +  P+        +QL     V     S          +  +S   G GKT +     +
Sbjct: 183 EEVIPISEIKPLKNFQLNMRAQVLQILQSRGG-------RAIVSLPTGSGKTRMVVEAAV 235

Query: 100 WLI-STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
            L+  + P  +I+ IA++  ++         +                    + +     
Sbjct: 236 ALLNQSGPDKNILWIADT-QEVCEQAVVCFKQIWERYGKGG---------ILNIYRTWGD 285

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG-TPDIINKSIL----- 212
                 D     +          +        +   +  DEA         + +      
Sbjct: 286 NDLPVYDEHGIIVASIQKLSASSEKLDSLR-ENLSTIIIDEAHHSIAPSYVEVLEHLGLS 344

Query: 213 --GFFTELNPNRFWIMTSNTRRLN--GWFYDIFNIPLED--WKRYQIDTRTVEGIDSGFH 266
             G  TE +     I  S T      G    + N+   +  +   +       G+    +
Sbjct: 345 RSGSETENDSRIPLIGLSATPERKEPGGTRKLHNMYRNNTVYPCQKFSPSAERGVSFDDN 404

Query: 267 EGIISRYGLDSDVARIEILGQFPQ 290
              +          +     +F  
Sbjct: 405 WQNMDYMRKKLTQWKYLADAEFVS 428


>gi|300724267|ref|YP_003713585.1| putative terminase large subunit [Xenorhabdus nematophila ATCC
           19061]
 gi|297630802|emb|CBJ91471.1| putative terminase large subunit [Xenorhabdus nematophila ATCC
           19061]
          Length = 553

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/317 (12%), Positives = 73/317 (23%), Gaps = 42/317 (13%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
             WQ      +       V  +    ++ A I   R   K+T+ A +  W +    G   
Sbjct: 70  EPWQQFAFANLFGF---KVKATGRRKYRSAYIQVPRKNAKSTVAAILANWFLVMEQGQQD 126

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           I  A         ++                     +   S     L ++ +    K   
Sbjct: 127 IYTAAVSRDQARIVF-------------------DDARQMSLLSKPLKKRVVIQQHKVTY 167

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
               +  +           T+      DE    PD    S L       P       +  
Sbjct: 168 PKTNSLLKPLAAKAATIEGTNPSLAIVDEYHLHPDNAVYSALELGMGARPEGILFAITTA 227

Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290
                           D+    +D              +     +D +   I+       
Sbjct: 228 GSNVISACKQHY----DYCCQILDGEEQNESLFALIYELDDENEIDDETLWIKANPNLDV 283

Query: 291 QEV-----NNF-----IPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGN 340
                   +       IP  + E    R  I        MG     EG  K  +     N
Sbjct: 284 SVDSAALHDTIQKARGIPSQWTEMLTKRFNIWCQGETPWMG-----EGAWKACLSDYDEN 338

Query: 341 IIEHIFDWSAKLIQETN 357
            ++ +  ++   +  T 
Sbjct: 339 DLKGLECYAGLDLSSTG 355


>gi|227355219|ref|ZP_03839624.1| phage terminase, large subunit [Proteus mirabilis ATCC 29906]
 gi|227164680|gb|EEI49541.1| phage terminase, large subunit [Proteus mirabilis ATCC 29906]
          Length = 577

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/369 (12%), Positives = 99/369 (26%), Gaps = 58/369 (15%)

Query: 2   PRLISTDQKLEQE-LHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
            R +    + EQ  L   +   + V+ F   V++      +GKP         WQ   + 
Sbjct: 41  ARHLKDLNEAEQRGLVWDVETVKRVIDFFAKVLKLNGGEHEGKPFILL----PWQCFVIG 96

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSET 118
           ++     ++       ++   + +G+G GK+ +   + L+ +     P   +   A  + 
Sbjct: 97  SIFGWKMTDGTRRFRMVY---VESGKGSGKSPMAGGVGLYCLVADSEPRAEVYAAATKKD 153

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
           Q    L+ +    +   P      +        G   E     +         T   +  
Sbjct: 154 QAM-ILFRDAVAMVDQSP-----ALSQRITKSGGTGKEWNLAYLK--------TSSFFRP 199

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR-RLNGWF 237
              D               DE     +     ++   T+        M +N+        
Sbjct: 200 ISSDDGQS--GPRPHCALIDEIHEHKNNTAVEMMRAGTKGRRQALIFMITNSGHDKTSVC 257

Query: 238 YDIFNIPL---------EDWKRYQIDTRTVEGI-------------------DSGFHEGI 269
           YD               + +  Y       +                     D    E +
Sbjct: 258 YDYHEYGRKVAEGTIEDDSFFSYICSLDEGDDPFKDESCWGKANPSLGYTFSDRYLREQV 317

Query: 270 ISRYGLDSDVARIEIL--GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE 327
               G+ +  + +  L   Q+   +        +++   +    D        G D++G 
Sbjct: 318 TQARGMPAKESIVRRLNFCQWVDADNPWINSETWMQCENTFTFDDLQGEECYGGLDLSGT 377

Query: 328 GGDKTVVVF 336
             D T +  
Sbjct: 378 -KDLTALAL 385


>gi|27452831|gb|AAO12336.1| cleavage/packaging protein [Porcine lymphotropic herpesvirus 3]
          Length = 684

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 46/141 (32%), Gaps = 15/141 (10%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GKT +   +   L+++   + I  +A+ +  + N ++ E+   +      + F   
Sbjct: 219 PRRHGKTWIVVAITSILLTSIEDLHIGYVAHQKH-VSNAVFTEIMNTM------YRFFPS 271

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                       L ++     S     TC                     ++ DEA+   
Sbjct: 272 KDIEVKRENGTILFKREGKKPSTLMCATCF--------NKNSIRGQTFNLLYIDEANFIK 323

Query: 205 DIINKSILGFFTELNPNRFWI 225
                +ILGF  + +    +I
Sbjct: 324 KDALPTILGFMLQKDAKLIFI 344


>gi|312066345|ref|XP_003136226.1| helicase [Loa loa]
 gi|307768612|gb|EFO27846.1| helicase [Loa loa]
          Length = 798

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/170 (11%), Positives = 45/170 (26%), Gaps = 16/170 (9%)

Query: 39  GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98
              G  L+  +    +Q + +  +  +  +             +    G GKT     ++
Sbjct: 314 ENLGIDLKSSTNLRPYQEKSLRKMFGNSRARSG--------VIVLPC-GAGKT-----LV 359

Query: 99  LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
               +T      + +A S   ++   W    K  S +           +  P    +   
Sbjct: 360 GVTAATTVNKRCLVLATSNVSVEQ--WRGQFKLWSTIRDDQLIRFTREARDPVPSGSNAN 417

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208
           +  + I +          +    +      +     V  DE    P  + 
Sbjct: 418 KPIVCISTYSMVAYTGKRTYAAEEAMKYIESREWGLVLLDEVHTIPAKMF 467


>gi|253689540|ref|YP_003018730.1| hypothetical protein PC1_3171 [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756118|gb|ACT14194.1| protein of unknown function DUF264 [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 589

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/323 (10%), Positives = 86/323 (26%), Gaps = 37/323 (11%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
           F+  +  +             +  + + R IG T   A   L    T  G + I ++ S+
Sbjct: 141 FLSEIFEYQRGWHQAGLQHRIRNILKS-RQIGATFYFAREALIDALTT-GRNQIFLSASK 198

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
            Q        +  +  ++      +   L      ++     ++    + +  +    + 
Sbjct: 199 AQAH-VFKNYIIDFARLVDVDLKGDPMVLPNGARLFFLGTNIRTAQSYTGNLYLDEYFWI 257

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL--------NPNRFWIMTSN 229
            +  +             +      TP  +  S   F++            +   +  S+
Sbjct: 258 PKFQELRKVASGMSLHKKWRSTYFSTPSSLAHSAYPFWSGELFNKGRSNKADHLHLDLSH 317

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
                G            W++       + G  + F    +          +  ++ +F 
Sbjct: 318 ANLSGGVLC-----GDGQWRQIVTVEDALSGGCNLFDLDQLMLEY-SPAEYQNLLMCEFV 371

Query: 290 QQEVNNFIPHNYIEEAM------SREAIDDL-----YAPLIMGCDIAGEGGDKT---VVV 335
             +  +  P   ++  M        +          Y P+ +G D +  G D     V+ 
Sbjct: 372 D-DKASVFPFEELQRCMVDALEEWEDFNPYALRPFAYKPVWIGYDPSHTG-DSAGCVVLA 429

Query: 336 FRRGN----IIEHIFDWSAKLIQ 354
             +       I   F W      
Sbjct: 430 PPQAPGGKFRILERFQWKGMDFA 452


>gi|170581278|ref|XP_001895614.1| helicase [Brugia malayi]
 gi|158597374|gb|EDP35540.1| helicase, putative [Brugia malayi]
          Length = 798

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/170 (11%), Positives = 45/170 (26%), Gaps = 16/170 (9%)

Query: 39  GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98
              G  L+  +    +Q + +  +  +  +             +    G GKT     ++
Sbjct: 314 ENLGIDLKSSTNLRPYQEKSLRKMFGNSRARSG--------VIVLPC-GAGKT-----LV 359

Query: 99  LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
               +T      + +A S   ++   W    K  S +           +  P    +   
Sbjct: 360 GVTAATTVNKRCLVLATSNVSVEQ--WRGQFKLWSTIRDDQLIRFTREARDPVPSGSNAN 417

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208
           +  + I +          +    +      +     V  DE    P  + 
Sbjct: 418 KPIVCISTYSMVAYTGKRTYAAEEAMKYIESREWGLVLLDEVHTIPAKMF 467


>gi|261226632|ref|ZP_05940913.1| putative portal protein [Escherichia coli O157:H7 str. FRIK2000]
          Length = 554

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 72/253 (28%), Gaps = 39/253 (15%)

Query: 86  RGIGKTTLNAWMMLWLIS---TRPGMSIICIANSETQLKNTL--WAEVSKWLSMLPHRHW 140
           R  G T   A   +   +    R G ++  + + +      +   A  S+  + L     
Sbjct: 67  RRTGLTWAEAGRNVITAAKPKRRGGRNVFYVGSKQEMALEYISACALFSRAFNQLADADV 126

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
           +E             E+L   +   +  + I   +     P    G        V  DEA
Sbjct: 127 YEQT---FWDRDKKEEILTYMIRFPNSGFKIQALSSR---PSNLRGLQGD----VVIDEA 176

Query: 201 SGTPDIINKSILGF--FTELNPNRFWIMTSN-TRRLNGWFYDIFNIPLEDWKRYQIDTRT 257
           +   + +++ +      T        I T N    L   +        +D+  ++I    
Sbjct: 177 AF-HESLDELLKAAMALTMWGARVRIISTHNGVDNLFNQYIQEAREGRKDYSVHRITLDD 235

Query: 258 ------------------VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299
                                 +  + + +        D    E     P++    +IPH
Sbjct: 236 AIADGLYRRICYVTGREWSPESEQKWRDDLYKNAPTREDA-DEEYGCI-PKKSGGAYIPH 293

Query: 300 NYIEEAMSREAID 312
             IE AM R+   
Sbjct: 294 ALIEMAMIRDIPI 306


>gi|239941274|ref|ZP_04693211.1| hypothetical protein SrosN15_09791 [Streptomyces roseosporus NRRL
           15998]
 gi|239987730|ref|ZP_04708394.1| hypothetical protein SrosN1_10528 [Streptomyces roseosporus NRRL
           11379]
 gi|291444714|ref|ZP_06584104.1| phage terminase [Streptomyces roseosporus NRRL 15998]
 gi|291347661|gb|EFE74565.1| phage terminase [Streptomyces roseosporus NRRL 15998]
          Length = 558

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/379 (9%), Positives = 78/379 (20%), Gaps = 70/379 (18%)

Query: 33  MRFFPWGIKGKPLEHFSQ-----PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRG 87
                W I+              P + Q EF+     +   +       + +  +S  RG
Sbjct: 17  YYVLDWMIENLAQPGRDDGEPFVPSQEQAEFL---CDYYELHPVTGKRIVHRGLLSRPRG 73

Query: 88  IGKTTLNAWMML----------------------WLISTRPGMSIICIANSETQLKNTLW 125
            GK+     + L                      W     P   +   A +E Q  NT  
Sbjct: 74  WGKSPFVGAIALAEACADVVPDGFDAYGEPIGRPWHSIRTP--LVRIAAVTEQQTDNTWV 131

Query: 126 AEVSKWL-SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY-------S 177
             +       L   +  E+    ++        +  S                      S
Sbjct: 132 PLLEMARGGSLSTDYGLEVLDTVIYLPRGEISPITSSATSVKGDPACFASLDQTEEWKES 191

Query: 178 EERPDTFVGPHNTHGMAV--FNDEASGTPDIINKSILGFFTE--------LNPNRFWIMT 227
                                 +  +               +               +  
Sbjct: 192 NGGVKLAKTLRFNAVKLGGSIIETPNAYTPGEGSVAENSAADYQAILDGRSRARGILVDH 251

Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG----IDSGFHEGIISRYGLDSDVA--- 280
                      +   +    +     D+          D     G     G+        
Sbjct: 252 REAPGDTDMTDEQSLVAGLRYAY--GDSSDHPDGCVLHDPPCAPGWSPIEGITGAFWDTS 309

Query: 281 --RIEILGQF---PQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG----DK 331
               ++   F        + ++    +  A   + + +    +++G D + +      D 
Sbjct: 310 NEPQDLRADFLNQITHAADAWLSQPEVRAATDLDRVVEDDDRIVLGFDGSRKRSRGVTDA 369

Query: 332 TVV--VFRRGNIIEHIFDW 348
           T +         +  I  W
Sbjct: 370 TALIGCRLSDGHLFEIGVW 388


>gi|153818431|ref|ZP_01971098.1| conserved hypothetical protein, putative [Vibrio cholerae NCTC
           8457]
 gi|126510990|gb|EAZ73584.1| conserved hypothetical protein, putative [Vibrio cholerae NCTC
           8457]
          Length = 550

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 54/392 (13%), Positives = 103/392 (26%), Gaps = 67/392 (17%)

Query: 8   DQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCH 67
           D++ ++E       A+    F  F   + P          FS    +QL          +
Sbjct: 42  DRQEKEEKARNKRRAKSKHDFAYFCQTYMP----DAFTLAFS---EYQLALTRLAA---N 91

Query: 68  SNVNNSNPTIFKCAI---------------------SAGRGIGKTT-LNAWMMLWLISTR 105
            N+N  +  +FK  I                        R  GKTT     M LWL    
Sbjct: 92  RNLNRQDEALFKELIDPRDHGFIKQPISGEYEGILDIEPRDHGKTTRNTQAMPLWLALNH 151

Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
           PG  I+    S    K  +          +          L  +         ++ + + 
Sbjct: 152 PGSFIVICGASADSAKEMM--------DAIKDDLEDNELILDDYGEQRGNTWTKRKIKLA 203

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMA--VFND---EASGTPDIINKSILGFFTELNP 220
           +    +        R         TH +   + +D   E+        +        L  
Sbjct: 204 NGSSIVAVGRGQRLRGIKNKYQRPTHIICDDLLDDKEVESPTLRRQAERWFKRVIMNLGK 263

Query: 221 NRFWIMTSN---TRRLNGWFYDIFNIPL-EDWKRYQIDTRTV---EGIDSGF-HEGIISR 272
               I+ +       L     +        +W   +    T        S +  + + ++
Sbjct: 264 GALTIIANTIMHPDDLPSRLLNQIEDGRLPNWLGLRFSAITPSGRPLFPSRWSLQDLENK 323

Query: 273 YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA-PLIMGCDIAGEG--- 328
                     E + + P  + +     ++      +    DL    + M  D A  G   
Sbjct: 324 RIASGSAWWTEWMNR-PIADEDADFKEDWF--IYFKPYELDLRDCTIGMAVDPA-TGLKK 379

Query: 329 GDKTVVVF--RR----GNIIEHIFDWSAKLIQ 354
           GD + +    R      + +     W    +Q
Sbjct: 380 GDWSFIAVVARHKITMVDHVLFAKGWKESDLQ 411


>gi|118468638|ref|YP_885629.1| type III restriction enzyme, res subunit [Mycobacterium smegmatis
           str. MC2 155]
 gi|118169925|gb|ABK70821.1| type III restriction enzyme, res subunit [Mycobacterium smegmatis
           str. MC2 155]
          Length = 566

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 50/181 (27%), Gaps = 16/181 (8%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q +  +        N +       +  +    G GKT     ++   +  +    +I +A
Sbjct: 170 QRDACKQSQNRLRMNPH-------RVLLHMPTGSGKTRTAMHIIASELRQQEPTLVIWLA 222

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            S  +L     +E  K    L  R              W +  L+ +   D        +
Sbjct: 223 YS-EELCEQAASEFEKAWHYLGDRELKTY-------RMWGSRDLDINDVRDGFMVAGLAK 274

Query: 175 TYSEERPDTFVGPHN-THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233
           T+   + D             V  DEA        + +L    + N     +  + T   
Sbjct: 275 TFELMKRDPDFLARMADRVSLVIIDEAHQAIAQTYRLVLEVLCDRNEETKLLGLTATPGR 334

Query: 234 N 234
            
Sbjct: 335 T 335


>gi|326559990|gb|EGE10387.1| terminase [Moraxella catarrhalis 7169]
 gi|326569691|gb|EGE19743.1| terminase [Moraxella catarrhalis BC1]
          Length = 564

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/306 (8%), Positives = 67/306 (21%), Gaps = 54/306 (17%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
             WQ+                      K  I   R  GK+ + A +  ++       G  
Sbjct: 83  ESWQIFACCLPFGWIKRATG--FRRYTKILIFVCRKNGKSAIAAGIGNYMFCADGEFGAE 140

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           +   A +E Q                  + ++ ++  + + +        + +       
Sbjct: 141 VYSGATTEKQAWEVFRPAKIMVERTKALKDFYGIEVNASNMARLADGSRFEPIIGKPGD- 199

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPNRFWIMTS 228
                               +       DE      + +  ++             ++T+
Sbjct: 200 -------------------GSSPSCAIIDEYHEHKNNDLYDTMETGMGAREQPIMLVITT 240

Query: 229 NTRRLNGWFYDIFNIPL----------------------EDWKRYQIDTRTVEGIDSGFH 266
               + G  + +                           +DW       +    +D    
Sbjct: 241 AGSSIGGACHQMVRDAEKMLDGVMDIPDLWAVLYGMDKDDDWTSEIALKKANPNMDISVS 300

Query: 267 EGIISRYGLD-------SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319
              +     D         + R + L ++   +        +               P  
Sbjct: 301 AEFLQARQRDAKMSAAKQAIFRTKHLNEWVGAKNAWLNMAKWANAPERLPLSALTGRPCF 360

Query: 320 MGCDIA 325
           +G D+A
Sbjct: 361 IGLDLA 366


>gi|328543298|ref|YP_004303407.1| Large terminase subunit [polymorphum gilvum SL003B-26A1]
 gi|326413044|gb|ADZ70107.1| Large terminase subunit [Polymorphum gilvum SL003B-26A1]
          Length = 470

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 72/285 (25%), Gaps = 48/285 (16%)

Query: 84  AGRGIGKTTLNAWMMLWL-ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
            GR IG +   A+  +               +  + Q +  L+ E  K  +        +
Sbjct: 34  KGRQIGLSWSTAYACVSRTALAGARHDQWVSSRDDIQAR--LFLEDCKLWASGIDLAARD 91

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS- 201
           +   ++   G ++  +   +   +     +  +     PD   G           DE + 
Sbjct: 92  LGEQAIDEDGKHSAYV---LRFSNGRRIHSMSS----NPDAQAGKRGGR----VLDEFAL 140

Query: 202 -GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR---- 256
              P  +        T         + S  R    +F  +     E     +I       
Sbjct: 141 HPDPRKLWSIAYPGITWGGN---MEVISTHRGSGNFFNQLVREARESGNPKKISLHRVTL 197

Query: 257 --------------------TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
                                 + +    +   +     D +    E + Q P  +   F
Sbjct: 198 QDALDDGFLWKLQQSLPEDDERQEMTEADYYDWVKAGCADEESFLQEYMCQ-PADDDAAF 256

Query: 297 IPHNYIEEAMSREAIDD---LYAPLIMGCDIAGEGGDKTVVVFRR 338
           + ++ I                  L  G DI  +  D TV+    
Sbjct: 257 LEYDLIAACEYPGDSPWRTMEGGRLFAGIDIGRK-RDLTVLWVVE 300


>gi|329945026|ref|ZP_08292976.1| hypothetical protein HMPREF9056_00859 [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328529487|gb|EGF56391.1| hypothetical protein HMPREF9056_00859 [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 370

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 52/175 (29%), Gaps = 12/175 (6%)

Query: 60  EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
             ++    S  +          I+  RG+GKT +   +     S R    ++    +   
Sbjct: 21  RVIEEFLESLDDGPGAPGLLELITGARGVGKTVMLTAL---GDSARERGWVVVDETAREG 77

Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
           L + L  E ++ LS L  +    + SLSL           +        +    R  ++ 
Sbjct: 78  LMDRLATEFTRQLSQLAGKERSRLTSLSLSTPLGGGSATLEHAPAPEPSWRQKARALTQW 137

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF---FTELNPNRFWIMTSNTR 231
             +     H T  +    DE    P    +++                +M    +
Sbjct: 138 LAE-----HGTGLLLTI-DEVHAIPREELRALSAEVQHLIREGAPIGLLMAGLPK 186


>gi|258427139|ref|ZP_05688061.1| terminase large subunit [Staphylococcus aureus A9299]
 gi|258445566|ref|ZP_05693748.1| terminase large subunit [Staphylococcus aureus A6300]
 gi|258455564|ref|ZP_05703521.1| phage terminase, large subunit [Staphylococcus aureus A5937]
 gi|257849917|gb|EEV73876.1| terminase large subunit [Staphylococcus aureus A9299]
 gi|257855613|gb|EEV78546.1| terminase large subunit [Staphylococcus aureus A6300]
 gi|257862252|gb|EEV85023.1| phage terminase, large subunit [Staphylococcus aureus A5937]
          Length = 566

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 55/381 (14%), Positives = 100/381 (26%), Gaps = 63/381 (16%)

Query: 19  LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78
           +   E       F+   F    KG   +   QP  WQ   + ++    H           
Sbjct: 54  MFDEELAHRPIRFIE-KFCKPSKGSKRQLVLQP--WQHFIIGSLFGWVHK--ETKLRRYK 108

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLP 136
           +  I  GR  GKTT  + +  + +S     G  I  +AN   Q +  L+ E    +   P
Sbjct: 109 EALIFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKASP 167

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
                              +L E    +  + +     +    +          +     
Sbjct: 168 -------------------KLRENFRPLRDEIHYDATISKIMPQASDSDKLDGLNTHMGI 208

Query: 197 NDEASGTPD-IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255
            DE     D  +   I              +T+   +L+G   D+     +   +   D 
Sbjct: 209 FDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVDMVEAGRDTLDQIIEDE 268

Query: 256 RT----------------------VEG----IDSGFHEGIISRYGLDSDV---ARIEILG 286
           RT                             ID    +    +             +   
Sbjct: 269 RTFYYLASLDDDDDINDSSNWIKANPNLGVSIDLDEMKEEWEKAKRTPAERGDFITKRFN 328

Query: 287 QFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLIMGCDIAGEGGDKTV----VVFRRGNI 341
            F   +  +FI +  +++        +    P  +G D++    D T          G +
Sbjct: 329 IFANNDEMSFIDYPTLQKNNDIISLDELEGRPCTIGYDLSET-EDFTAACATFALDNGKV 387

Query: 342 IEHIFDWSAKLIQETNQEGCP 362
                 W  K   E + E  P
Sbjct: 388 AVLTHSWIPKHKVEYSNEKIP 408


>gi|307329066|ref|ZP_07608233.1| Terminase [Streptomyces violaceusniger Tu 4113]
 gi|306885261|gb|EFN16280.1| Terminase [Streptomyces violaceusniger Tu 4113]
          Length = 491

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 47/173 (27%), Gaps = 20/173 (11%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             WQ   ++   +   ++ N S+P      ++  R  GK  +     LW +       I+
Sbjct: 41  DPWQRFVLDE-GMGEKADGNWSSPE---VCVNVPRQCGKGGIIEARELWGLYVGGEQLIL 96

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A+     KN  +  + + +   P  H             W     E            
Sbjct: 97  HSAHEFKTAKNA-FKRIERLIRSTPDLH-------KRVKRYWQTVGEE-------GIELH 141

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
           T +           G        +  DE     D    ++      ++  + W
Sbjct: 142 TGQLLRFIARSGGSG-RGFTADCIVLDEDMILGDDAMAALAPTLAAVDNPQTW 193


>gi|254510524|ref|ZP_05122591.1| phage DNA Packaging Protein [Rhodobacteraceae bacterium KLH11]
 gi|221534235|gb|EEE37223.1| phage DNA Packaging Protein [Rhodobacteraceae bacterium KLH11]
          Length = 141

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/143 (11%), Positives = 31/143 (21%), Gaps = 26/143 (18%)

Query: 82  ISAGRGIGKTTLNAWMMLWL------ISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
           I  GRG GKT   A  +  +      +       +  +  +  Q+++ +    S  L   
Sbjct: 2   IMGGRGAGKTRAGAEWVRSMVEGSLPLDKGEACRVALVGETFDQVRDVMIFGDSGILQCS 61

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
           P       ++                                        G       A 
Sbjct: 62  PPDRRPVWKASERKL------------------VWPNGAEAQAFSAHDPEGLRGPQFDAA 103

Query: 196 FNDEASGTPD--IINKSILGFFT 216
           + DE +           +     
Sbjct: 104 WVDELAKWKKAGETWDMLQFALR 126


>gi|60681904|ref|YP_212048.1| hypothetical protein BF2425 [Bacteroides fragilis NCTC 9343]
 gi|265763954|ref|ZP_06092522.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|60493338|emb|CAH08123.1| hypothetical protein BF2425 [Bacteroides fragilis NCTC 9343]
 gi|263256562|gb|EEZ27908.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 568

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 47/177 (26%), Gaps = 15/177 (8%)

Query: 79  KCAISAGRGIGKTTLN----AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
              +  GRG+ K+T+     +   ++ +   PG  +  + N+ T L++ +   V     +
Sbjct: 36  NLVVVGGRGLAKSTVIQARRSADCVYDM---PGAPLAFVGNTYTNLRDNIMPAVKTGWEL 92

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
           +         S    P  W            +               D          + 
Sbjct: 93  MGLYEGVHYVSSCRPPESWRRRCSVIVDDYKNTVSFFNGCIIFLGSLDHPSLLAGKSVVH 152

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFW--------IMTSNTRRLNGWFYDIFNI 243
           +F DE+   PD      +                    I T     L G +   F  
Sbjct: 153 LFFDESKYAPDNKVNRAMPVLRGDAIRYGCSHYFLGVTITTDMPDVLEGEYDWYFRY 209


>gi|53713628|ref|YP_099620.1| hypothetical protein BF2339 [Bacteroides fragilis YCH46]
 gi|52216493|dbj|BAD49086.1| hypothetical protein [Bacteroides fragilis YCH46]
          Length = 568

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 47/177 (26%), Gaps = 15/177 (8%)

Query: 79  KCAISAGRGIGKTTLN----AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
              +  GRG+ K+T+     +   ++ +   PG  +  + N+ T L++ +   V     +
Sbjct: 36  NLVVVGGRGLAKSTVIQARRSADCVYDM---PGAPLAFVGNTYTNLRDNIMPAVKTGWEL 92

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
           +         S    P  W            +               D          + 
Sbjct: 93  MGLYEGVHYVSSCRPPESWRRRCSVIVDDYKNTVSFFNGCIIFLGSLDHPSLLAGKSVVH 152

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFW--------IMTSNTRRLNGWFYDIFNI 243
           +F DE+   PD      +                    I T     L G +   F  
Sbjct: 153 LFFDESKYAPDNKVNRAMPVLRGDAIRYGCSHYFLGVTITTDMPDVLEGEYDWYFRY 209


>gi|194289059|ref|YP_002004966.1| bacteriophage p2 gpp capsid protein; terminase, atpase subunit
           [Cupriavidus taiwanensis LMG 19424]
 gi|193222894|emb|CAQ68899.1| bacteriophage P2 GPP capsid protein; Terminase, ATPase subunit
           [Cupriavidus taiwanensis LMG 19424]
          Length = 593

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/294 (11%), Positives = 75/294 (25%), Gaps = 21/294 (7%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
           FM+++  +             +  + + R IG T   A        TR G + I ++ S+
Sbjct: 146 FMDSMFDYQRVWYEAGLVERIRNILKS-RQIGATWYFAREAFIDALTR-GRNQIFLSASK 203

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
            Q        +             +   L    + ++     ++      +  +    + 
Sbjct: 204 AQAHVFKHYIIQFAKDAAGVELKGDPLVLPNGATLYFLGTNARTAQSYHGNLYLDEYFWI 263

Query: 178 EERPDTFVGPHNTHGMAVF----NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233
           +   +           A +        S           G        +   +       
Sbjct: 264 QRFQELRKVASGMAIHAKWRQTYFSTPSSLAHEAYPFWSGALFNRGRRKDQHVQV--DVS 321

Query: 234 NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293
           +             W++       V G  + F    + R   D+D     ++  F   + 
Sbjct: 322 HAHLQAGRRCADGQWRQVVTVEDAVRGGCNLFDLEQLRREYSDAD-FENLLMCGFID-DT 379

Query: 294 NNFIPHNYIEEAMSREAIDDLY-----------APLIMGCDIAGEGGDKTVVVF 336
            +  P + +   M                      + +G D  G GGD   +V 
Sbjct: 380 ASVFPLSMLMRCMVDSWEVWEDFRHWSPRPLGNREVWVGYDPNGGGGDSAALVV 433


>gi|29566200|ref|NP_817768.1| gp7 [Mycobacterium phage Rosebush]
 gi|29424925|gb|AAN01849.1| gp7 [Mycobacterium phage Rosebush]
          Length = 564

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/336 (14%), Positives = 85/336 (25%), Gaps = 49/336 (14%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM-MLWLISTRPGMSIICIANS 116
            +  +     + +++         I+     GK+T+ +   +L  +   P   II     
Sbjct: 70  ALWLIAEAIEALLHSPPGVTRNLLITCPPQEGKSTMASVYTVLRALQLNPNARIILACYG 129

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
           +           S+    L  RH   ++             L+   G +           
Sbjct: 130 QDLA-----HGHSRKCRDLIKRHGSGVRDAMTGAQIEDKLGLKLERGANKVSEWSIEGGS 184

Query: 177 SEERPDT-FVGPHNTHGMAVFND-------EASGTP-----DIINKSILGFFTELNPNRF 223
                                 D       EA         D+   ++            
Sbjct: 185 GGLVATGLGGTITGKPADLFIIDDPYKHMSEADSATYRAKVDLWMATVATTRLAPGAPTI 244

Query: 224 WIMTS-NTRRLNG---WFYDIFNIPLEDWKRYQIDTRTVEGI----DSGFHEGIISRYGL 275
            I T  +   L G               W+   I     EGI    D    E ++S  G 
Sbjct: 245 LIQTRWHPEDLAGKVLTAELELPKAQRTWRHINIPAIAEEGIKDALDRAPGEAMVSARGR 304

Query: 276 DSD------------VARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL--IMG 321
             +            V      G  P          ++ E    R        P+  I+G
Sbjct: 305 TKEQFEATKRKVGDRVWYAMYQGS-PTNPAGGLFQRSWFE---DRRLTGTPILPVASIVG 360

Query: 322 CDIAGEG-GDKTVVV---FRRGNIIEHIFDWSAKLI 353
            D A  G GD+T ++         I  + DWS ++ 
Sbjct: 361 IDPADSGEGDETGIIAGTLTGDGTIALVEDWSGQMT 396


>gi|298693633|gb|ADI96855.1| terminase-large subunit [Staphylococcus aureus subsp. aureus ED133]
          Length = 563

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 90/348 (25%), Gaps = 60/348 (17%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
             WQ   + ++    H           +  I  GR  GKTT  + +  + +S     G  
Sbjct: 81  QPWQHFIIGSLFGWVHK--ETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAE 138

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I  +AN   Q +  L+ E    +   P                   +L E    +  + +
Sbjct: 139 IHLLANVMKQAR-ILFDESKAMIKASP-------------------KLRENFRPLRDEIH 178

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTS 228
                +    +          +      DE     D  +   I              +T+
Sbjct: 179 YDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITT 238

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRT----------------------VEG----ID 262
              +L+G   ++     +   R   D RT                             ID
Sbjct: 239 AGYQLDGPLVNMVEAGRDTLDRIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSID 298

Query: 263 SGFHEGIISRYGLDSDV---ARIEILGQFPQQEVNNFIPHNYIEEAMSR-EAIDDLYAPL 318
               +    +     D       +    F      +FI +  +++        +    P 
Sbjct: 299 LDEMKEEWEKAKRTPDERGDFITKRFNIFANNNEMSFIDYPTLQKNNEIVSLEELEGRPC 358

Query: 319 IMGCDIAGEGGDKTV----VVFRRGNIIEHIFDWSAKLIQETNQEGCP 362
            +G D++    D T          G +      W  K   E + E  P
Sbjct: 359 TIGYDLSET-EDFTAACATFALDNGKVAVLTHSWIPKHKVEYSNEKIP 405


>gi|315619700|gb|EFV00221.1| protein gp28 [Escherichia coli 3431]
          Length = 554

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 72/253 (28%), Gaps = 39/253 (15%)

Query: 86  RGIGKTTLNAWMMLWLIS---TRPGMSIICIANSETQLKNTL--WAEVSKWLSMLPHRHW 140
           R  G T   A   +   +    R G ++  + + +      +   A  S+  + L     
Sbjct: 67  RRTGLTWAEAGRNVITAAKPKRRGGRNVFYVGSKQEMALEYISACALFSRAFNQLADADV 126

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
           +E             E+L   +   +  + I   +     P    G        V  DEA
Sbjct: 127 YEQT---FWDRDKKEEILTYMIRFPNSGFKIQALSSR---PSNLRGLQGD----VVIDEA 176

Query: 201 SGTPDIINKSILGF--FTELNPNRFWIMTSN-TRRLNGWFYDIFNIPLEDWKRYQIDTRT 257
           +   + +++ +      T        I T N    L   +        +D+  ++I    
Sbjct: 177 AF-HESLDELLKAAMALTMWGARVRIISTHNGVDNLFNQYIQEAREGRKDYSVHRITLDD 235

Query: 258 ------------------VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299
                                 +  + + +        D    E     P++    +IPH
Sbjct: 236 AIADGLYRRICYVTDQEWSPESEQKWRDDLYKNAPTREDA-DEEYGCI-PKKSGGAYIPH 293

Query: 300 NYIEEAMSREAID 312
             IE AM R+   
Sbjct: 294 ALIEMAMIRDIPI 306


>gi|258545857|ref|ZP_05706091.1| probable terminase (atpase subunit) related protein
           [Cardiobacterium hominis ATCC 15826]
 gi|258518873|gb|EEV87732.1| probable terminase (atpase subunit) related protein
           [Cardiobacterium hominis ATCC 15826]
          Length = 595

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/359 (11%), Positives = 88/359 (24%), Gaps = 73/359 (20%)

Query: 39  GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98
                P     +    +  F+  +  H  +   +S     +  + + R IG T   A   
Sbjct: 126 EQSNAPKISTDEVEELRRAFLANIYPHQRAWYEHSKRYEMRQYVKS-RQIGATYYFAQEA 184

Query: 99  LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
           L    T  G + I I+ S++Q                   H F+   ++         L 
Sbjct: 185 LITALTT-GKNQIFISASKSQA------------------HVFKSNIVAFVEKTIGKTLR 225

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFT 216
            + + +  +       T      +T           ++ DE    P    I     G   
Sbjct: 226 GEHIKLGPETTLYFLGT----NSNTAQSYSGD----LYVDEYFWIPQFAKIQHVASGMTV 277

Query: 217 ELNPNRFWIMT-SNTRRLNGWFYDIFNIPLEDWKRYQID-------------TRTVEGID 262
             +    +  T S T       +   +      K   I+                     
Sbjct: 278 HDDRRITYFSTPSTTTHEAYPLWTGQHFNKGRPKSEHINLDVSHAALKEGRLCEDGYFRQ 337

Query: 263 SGFHEGIISRYGL-----------DSDVARIEILGQFPQQEVNNFIPHNYIEEAM----- 306
               E  I+                       ++ QF     ++      ++  M     
Sbjct: 338 LITIEDAINSGFDRVTLEKLRIKFPPGQFENLLMCQFVNDG-DSIFKMAELQRCMVDAWT 396

Query: 307 -SREAIDDLYAP-----LIMGCDIAGEGGDKT--VVVF--RRGNIIEHIF--DWSAKLI 353
             ++       P     + +G D +    D +  V+      G +   I    ++    
Sbjct: 397 VWQDYTPLAARPLGDVPVWIGYDPSRSQDDASLVVIAPPQVEGGVFRIIDKQSFNGLDF 455


>gi|303251439|ref|ZP_07337615.1| Putative terminase large subunit [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307252326|ref|ZP_07534223.1| Phage D3 terminase-like protein [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307261236|ref|ZP_07542911.1| Phage D3 terminase-like protein [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|302649671|gb|EFL79851.1| Putative terminase large subunit [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306860248|gb|EFM92264.1| Phage D3 terminase-like protein [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306868967|gb|EFN00769.1| Phage D3 terminase-like protein [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 556

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/344 (11%), Positives = 77/344 (22%), Gaps = 54/344 (15%)

Query: 22  AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81
           +E V  F  F        +KG       +   WQ+     +    +              
Sbjct: 42  SEIVERFLKFSKV--CPHVKGHLRGKAIELSDWQVFLFANILGFKYRFTGLRKYRSAYIQ 99

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           ++  R   K+T+ A +  W +    G   I  A         ++                
Sbjct: 100 VA--RKNAKSTVAAVLANWFLVMEKGQQDIYTAAVSRDQARIVF---------------- 141

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
                +   +     L ++      K       +              T+      DE  
Sbjct: 142 ---DDARQMAVLSKPLKKRVQIQQHKMIYPQNNSLMRPLAAKSSTIEGTNPSLAIVDEYH 198

Query: 202 GTPDIINKSILGFFTELNPNRFWIMT----SNTRRLNGWFYDIF---------------- 241
             PD    S L       P           SNT       YD                  
Sbjct: 199 LHPDNSVYSALELGQGARPEGLLFAITTAGSNTISACKQHYDYCCQILDGNEQNESIFIM 258

Query: 242 -------NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF--PQQE 292
                  +   +  +  + +    + I     E  I++           +  +F      
Sbjct: 259 IFELDDESEVDDPSQWIKANPNIGKSIPFQDFENTIAKARGIPSEWVEMLTKRFNVWCNG 318

Query: 293 VNNFIPHNYIEEAMSREAIDD-LYAPLIMGCDIAGEGGDKTVVV 335
              ++     +         D       MG D++    D T + 
Sbjct: 319 STPWLGEGNWKACERSYQETDLHGKECYMGLDLSST-NDLTSIC 361


>gi|29566410|ref|NP_817976.1| gp3 [Mycobacterium phage Che9d]
 gi|29425135|gb|AAN07921.1| gp3 [Mycobacterium phage Che9d]
          Length = 506

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/315 (9%), Positives = 68/315 (21%), Gaps = 63/315 (20%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            RWQ +   A            +      +I+  R  GKT      ++ +  +RPG   +
Sbjct: 48  DRWQEDIWYAALGLREDGTLACDVMGVTLSIA--RQAGKTWGVMVGLVAICLSRPGTLAV 105

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             ++ +     TL  +++  +     R     Q          A    + +   +    +
Sbjct: 106 WSSHHDRTSSQTL-DKIAGIVERPEIRPKMRAQH------PVVATDDNRGVHFANGSKIL 158

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
                S            +       DE     D     +L     ++            
Sbjct: 159 FGARSSGFGRG------FSEVDIQVYDECQNLKDSALTDMLAAM-NVSEIGLAFFMGTPP 211

Query: 232 RLNGWFYDIFNIPLEDWKRYQID-------------TRTVEGIDSGFHEG---------- 268
           R       +         +                             +           
Sbjct: 212 RPQEVALGVHEAFKRRRDKALAPVKKRPFKGIYVEFAPESPETVVADIDAPRFWEKLAEV 271

Query: 269 -------------IISRYGLDSDVARIEILGQFPQQEVN-NFIPHNYIEE-AMSREAIDD 313
                              +  +  R E+ G + +       +P +     A   +   +
Sbjct: 272 NPSFGFRVGKSAIERLVENMSPEDVRREVFGIWDKTNETLAVVPRDQWNNLAADVDVDPE 331

Query: 314 LYAPLIMGCDIAGEG 328
                    D+A  G
Sbjct: 332 ---------DVAAYG 337


>gi|222151774|ref|YP_002560930.1| hypothetical protein MCCL_1527 [Macrococcus caseolyticus JCSC5402]
 gi|222120899|dbj|BAH18234.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 568

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/303 (10%), Positives = 84/303 (27%), Gaps = 59/303 (19%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRP----GMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
           +S  R  GK+ +   +  + +           I   + +  Q  N ++      L+ L  
Sbjct: 98  VSTARKQGKSIIVNGVAQYELIFGKSPIREREIYISSLTYKQA-NVIFKMSKSQLNQLKK 156

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
           +  +  +++ +  +       E ++                   +       T+      
Sbjct: 157 KSGYFKKNIRIISTEIEHIPSESTI---------------MALANNPDAVDGTNPSVAIL 201

Query: 198 DEASGTPDIINKSILGF-FTELNPNRFWIM------TSNTR----------------RLN 234
           DE +G PD    S L    ++       I+       +N                    +
Sbjct: 202 DEFAGMPDTEMYSRLKTGMSQQENPLTLIVSTAGDDLTNPMYAEEYQYIKKLLNEEIEDD 261

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTV-EGIDSG------------FHEGIISRYGLDSDVAR 281
            +F     +  E+    +         +++               +    +  + S   +
Sbjct: 262 NYFVYCAEMDSEEEISDEDKWIKAMPLLENDKKRAVILKNIKADIKEQEEKGKMTSIKIK 321

Query: 282 IEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTV--VVFRRG 339
              + Q    + ++F+  N      S +A + +     +G D++       V  +     
Sbjct: 322 NFNMWQAASDKEDSFVKVNDWNSN-SIDAPELMNTDCWIGVDLSRLHDISAVTPIHAIDD 380

Query: 340 NII 342
           N +
Sbjct: 381 NKM 383


>gi|323169496|gb|EFZ55169.1| protein gp28 [Shigella sonnei 53G]
          Length = 554

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 72/253 (28%), Gaps = 39/253 (15%)

Query: 86  RGIGKTTLNAWMMLWLIS---TRPGMSIICIANSETQLKNTL--WAEVSKWLSMLPHRHW 140
           R  G T   A   +   +    R G ++  + + +      +   A  S+  + L     
Sbjct: 67  RRTGLTWAEAGRNVITAAKPKRRGGRNVFYVGSKQEMALEYISACALFSRAFNQLADADV 126

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
           +E             E+L   +   +  + I   +     P    G        V  DEA
Sbjct: 127 YEQT---FWDRDKKEEILTYMIRFPNSGFKIQALSSR---PSNLRGLQGD----VVIDEA 176

Query: 201 SGTPDIINKSILGF--FTELNPNRFWIMTSN-TRRLNGWFYDIFNIPLEDWKRYQIDTRT 257
           +   + +++ +      T        I T N    L   +        +D+  ++I    
Sbjct: 177 AF-HESLDELLKAAMALTMWGARVRIISTHNGVDNLFNQYIQEAREGRKDYSVHRITLDD 235

Query: 258 ------------------VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299
                                 +  + + +        D    E     P++    +IPH
Sbjct: 236 AIADGLYRRICYVTDQEWSPESEQKWRDDLYKNAPTREDA-DEEYGCI-PKKSGGAYIPH 293

Query: 300 NYIEEAMSREAID 312
             IE AM R+   
Sbjct: 294 ALIEMAMIRDIPI 306


>gi|239835184|ref|ZP_04683510.1| Hypothetical protein OINT_3000017 [Ochrobactrum intermedium LMG
           3301]
 gi|239821160|gb|EEQ92731.1| Hypothetical protein OINT_3000017 [Ochrobactrum intermedium LMG
           3301]
          Length = 508

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 51/348 (14%), Positives = 85/348 (24%), Gaps = 62/348 (17%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
            P+  Q EFM  +               F+  I   R  G +TL   M+L          
Sbjct: 40  HPNDAQEEFMRKL--------------WFRNLIPKARQRGFSTLVQLMILDACLFVLNTK 85

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLP------------HRHWFEMQSLSLHPSGWYAEL 157
              IA      +     ++      LP            +    E ++ S    G  A  
Sbjct: 86  AAIIAQDLELARAIRDDKIMFAYDRLPDFVLRNVPLVVDNAKRLEWKNGSEMIIGTTARG 145

Query: 158 LEQSMGIDSKH-YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP-DIINKSILGFF 215
              S    S++           +   +   P   +G  +    A G   D   K +    
Sbjct: 146 RTLSWLHVSEYGEICAKNPEHAKEIQSGALPAAEYGTIIIEATAQGADGDFTTKVMQAKA 205

Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275
              +     +   + R     ++D     +ED +   I  +     D             
Sbjct: 206 VAESGR--QLTRKDYRLHFASWWDAPEYEVEDPEHITISPKDHAYFDRMEGLIGREISLN 263

Query: 276 DSDVARIEILGQFPQQEVNNF--IPHNYIEE--------------------AMSREAIDD 313
                  +   +F   +   +   P    E                             D
Sbjct: 264 KRAWYVQQRDVEFSGDQEMMWSQFPTTLEEAFQQSTEGKFLADQLSLARRQGRIGVFKHD 323

Query: 314 LYAPLIMGCDIAGEGGDKTVVVFRR--GNIIEHIFDWSAKLIQETNQE 359
              P+    DI     D T + F +  GN+   I         E N E
Sbjct: 324 PSKPVYTFWDIG--TDDDTAIWFMQINGNMFHFI------DFYECNGE 363


>gi|86131010|ref|ZP_01049609.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
 gi|85818421|gb|EAQ39581.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
          Length = 886

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/205 (12%), Positives = 50/205 (24%), Gaps = 37/205 (18%)

Query: 32  VMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT 91
               +PW               +Q  F++    H   +  +         + A  G GKT
Sbjct: 6   FQFIYPW-------------RTYQERFLKDFQDHIADDHLH---------VVAPPGSGKT 43

Query: 92  TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151
            L   MM      R     + +A + T         +           + E +  ++  S
Sbjct: 44  VLGLEMM-----RRVDKCTLVLAPTIT---------IRNQWEERMFECFIEQEKCTIPLS 89

Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211
               +    +       +         +               +  DEA    +   K +
Sbjct: 90  RNIKKPAHITFATYQSLHAFAKNEMEGDMERVLNFFAQAGIKNIVLDEAHHLKNEWWKPL 149

Query: 212 LGFFTELNPNRFWIMTSNTRRLNGW 236
                EL       +T+     +  
Sbjct: 150 F-ALKELPECTITALTATPPYDSDQ 173


>gi|260888732|ref|ZP_05899995.1| type I restriction-modification system R subunit [Selenomonas
           sputigena ATCC 35185]
 gi|330839870|ref|YP_004414450.1| type III restriction protein res subunit [Selenomonas sputigena
           ATCC 35185]
 gi|260861485|gb|EEX75985.1| type I restriction-modification system R subunit [Selenomonas
           sputigena ATCC 35185]
 gi|329747634|gb|AEC00991.1| type III restriction protein res subunit [Selenomonas sputigena
           ATCC 35185]
          Length = 742

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/287 (10%), Positives = 74/287 (25%), Gaps = 41/287 (14%)

Query: 37  PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
           P G      +  ++P  +Q E +  +    H         + +  +S   G GKT + A 
Sbjct: 330 PDGHPDLAGDIVNRP--YQQEAVWRICEDVHRG-------VRRLLVSTPPGTGKTRMAAG 380

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
            +  L+  +    ++ +A+ E  +         ++  +LP     ++       +     
Sbjct: 381 AIEALLHQKAVSKVLYLADREELVHQAY----EQFRMLLPDAKLVDLLGDVREEAQADIV 436

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG-TPDIINKSIL--- 212
               ++ +D+ + + T        P         H   V  DE+     D     +    
Sbjct: 437 FATATIMMDAVNESRTETGARLYDP--------AHFDLVIIDESHPSIYDDHLVILNYFD 488

Query: 213 ---------GFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
                              +        +   + Y +     + W               
Sbjct: 489 AILLGFSSLPPTAPGEAEVYRFYDLAPGKPT-FAYSLAEALRDGWLVDFTLRDEAPEGVM 547

Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
                          +A +E        +       ++   A++   
Sbjct: 548 EPRLLYADLTEEQRTIAEMEY------SDTGAIASKDFDVPAVNNWL 588


>gi|281416525|ref|YP_003347326.1| terminase large subunit [Enterococcus phage phiFL2A]
 gi|270209389|gb|ACZ63932.1| terminase large subunit [Enterococcus phage phiFL2A]
 gi|270209454|gb|ACZ63996.1| terminase large subunit [Enterococcus phage phiFL2B]
          Length = 430

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 81/281 (28%), Gaps = 34/281 (12%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           + A RG  KTT  A  +  L+   P  +II +  ++T +      E+   ++ +    +F
Sbjct: 48  LLAHRGSFKTTTLAIAIALLMVLFPNKNIIFLRKTDTDV-----VEIILQVAKVLSSKYF 102

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
           +    +L+       L E +  +D+   T +  T        +      H   V  D+  
Sbjct: 103 KTLVFALYGVEL-VLLKETTTEVDTNLKTSSRGTSQLLGMGIYASLTGKHADIVITDDIV 161

Query: 202 GTPDIINKS--------ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253
              D ++++                N    +I T            +           + 
Sbjct: 162 NIKDRVSRAERERTKLQYQELQNVKNRGGRFINTGTPWHKEDAISKM-------PNVKKF 214

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
           D      ID    + +          A  E+       +  +        ++++      
Sbjct: 215 DCYETGLIDKEQRQALQQAMTPSLFAANYELK---HIADSESLFTAPTYTDSINLIYNGV 271

Query: 314 LYAPLIMGCDIAGEGGDKTVVVFR----RGNIIEHIFDWSA 350
            +       D A  G D T          G II +   W  
Sbjct: 272 AH------VDAAYGGDDSTAFTIFKEQKDGTIIGYGRKWQK 306


>gi|149198974|ref|ZP_01876015.1| hypothetical protein LNTAR_19957 [Lentisphaera araneosa HTCC2155]
 gi|149137969|gb|EDM26381.1| hypothetical protein LNTAR_19957 [Lentisphaera araneosa HTCC2155]
          Length = 882

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 50/192 (26%), Gaps = 19/192 (9%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q   ++A++ H             K  I A  G GKTTL        +  +   + +
Sbjct: 14  RPYQQRVLDALEEHLDDK---------KLHIVAAPGAGKTTLG-----IEVFRKLEKNAL 59

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL---HPSGWYAELLEQSMGIDSKH 168
            ++ +   +++     +  +        W       L   +   + A   +     +   
Sbjct: 60  VLSPT-RIIRDQWLNRLEDFCDFSMDLPWLSRSLDELASFNSVTYQALYSKLRGAGEEGS 118

Query: 169 YTITCRTYSEERPDTF-VGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
                   +E     F          A+  DEA        K +              +T
Sbjct: 119 EVDGAIKLTETAVKDFVDLLEKHKIGALILDEAHHLRSEWYKVLDELMQLKEDLTIVSLT 178

Query: 228 SNTRRLNGWFYD 239
           +     +     
Sbjct: 179 ATPPYDSKGHEW 190


>gi|109521765|ref|YP_655687.1| gp7 [Mycobacterium phage Qyrzula]
 gi|91980709|gb|ABE67427.1| gp7 [Mycobacterium phage Qyrzula]
          Length = 566

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/336 (14%), Positives = 85/336 (25%), Gaps = 49/336 (14%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM-MLWLISTRPGMSIICIANS 116
            +  +     + +++         I+     GK+T+ +   +L  +   P   II     
Sbjct: 72  ALWLIAEAIEALLHSPPGVTRNLLITCPPQEGKSTMASVYTVLRALQLNPNARIILACYG 131

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
           +           S+    L  RH   ++             L+   G +           
Sbjct: 132 QDLA-----HGHSRKCRDLIKRHGSGVRDAMTGAQIEDKLGLKLERGANKVSEWSIEGGT 186

Query: 177 SEERPDT-FVGPHNTHGMAVFND-------EASGTP-----DIINKSILGFFTELNPNRF 223
                                 D       EA         D+   ++            
Sbjct: 187 GGLVATGLGGTITGKPADLFIIDDPYKHMSEADSATYRAKVDLWMATVATTRLAPGAPTI 246

Query: 224 WIMTS-NTRRLNG---WFYDIFNIPLEDWKRYQIDTRTVEGI----DSGFHEGIISRYGL 275
            I T  +   L G               W+   I     EGI    D    E ++S  G 
Sbjct: 247 LIQTRWHPEDLAGKVLTAELELPKAQRTWRHINIPAIAEEGIKDALDRAPGEAMVSARGR 306

Query: 276 DSD------------VARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL--IMG 321
             +            V      G  P          ++ E    R        P+  I+G
Sbjct: 307 TKEQFEATKRKVGDRVWYAMYQGS-PTNPAGGLFQRSWFE---DRRLTGTPILPVASIVG 362

Query: 322 CDIAGEG-GDKTVVV---FRRGNIIEHIFDWSAKLI 353
            D A  G GD+T ++         I  + DWS ++ 
Sbjct: 363 IDPADSGEGDETGIIAGTLTGDGTIALVEDWSGQMT 398


>gi|293364905|ref|ZP_06611622.1| Res subunit family type III restriction enzyme [Streptococcus
           oralis ATCC 35037]
 gi|307703158|ref|ZP_07640104.1| type III restriction enzyme, res subunit [Streptococcus oralis ATCC
           35037]
 gi|291316355|gb|EFE56791.1| Res subunit family type III restriction enzyme [Streptococcus
           oralis ATCC 35037]
 gi|307623233|gb|EFO02224.1| type III restriction enzyme, res subunit [Streptococcus oralis ATCC
           35037]
          Length = 877

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 61/191 (31%), Gaps = 20/191 (10%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            ++Q + ++    +      +         ++A  G GKTT+   ++       P + ++
Sbjct: 11  RQYQKQVLDLFQDYQADGHVH--------LVAAP-GSGKTTIGIELIARF--GNPALVLV 59

Query: 112 CIANSETQLKNTL---WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
                  Q  + +   + E  + +S L  ++  EM++L++     +   + Q    +   
Sbjct: 60  PTVTIREQWVDRIQTAFLENEQKISDLVSQNLKEMKALTIVTYQAFHSAMNQLQSQEDGE 119

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
                        D            +  DE     +   KS+  F  +  P +   +T+
Sbjct: 120 AEDFV------GFDLLASLRAQKVATLCLDECHHLRNEWWKSLEAFRKQYGPLKLISLTA 173

Query: 229 NTRRLNGWFYD 239
                +     
Sbjct: 174 TPPYDSDPELW 184


>gi|154502292|ref|ZP_02039352.1| hypothetical protein RUMGNA_00105 [Ruminococcus gnavus ATCC 29149]
 gi|153797171|gb|EDN79591.1| hypothetical protein RUMGNA_00105 [Ruminococcus gnavus ATCC 29149]
          Length = 611

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 65/241 (26%), Gaps = 30/241 (12%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             I A R   K+ + A         +PG  I+  + +  Q K  +  ++   L       
Sbjct: 72  VCIVACRAAAKSFIIALYACCKAIIKPGSKIVLGSATRGQSKLIISEKIKNEL------- 124

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                   ++ S    + ++      ++         + +                  +E
Sbjct: 125 --------MNMSPALRKEIKDIKDSANESIVYFNNGSTIKVFTANEFARGLRSTDAVREE 176

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
                  I+ S++  F  +    F I           FY+      ED K   I +    
Sbjct: 177 FRQIDKNIDDSVISPFQTIRQAPFMI---------DPFYEGIECLKEDPKDIYISSSW-- 225

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319
             D  +   ++ +   D    R  ++  F      +    + I      +       P+ 
Sbjct: 226 LDDGHWMWNLVDQAYTDMLNNRTSVMLAF----DESITLKHNIRTQRQMQQEKKKQDPIT 281

Query: 320 M 320
            
Sbjct: 282 W 282


>gi|302422104|ref|XP_003008882.1| DEAD/DEAH box helicase [Verticillium albo-atrum VaMs.102]
 gi|261352028|gb|EEY14456.1| DEAD/DEAH box helicase [Verticillium albo-atrum VaMs.102]
          Length = 1801

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/322 (12%), Positives = 89/322 (27%), Gaps = 45/322 (13%)

Query: 51   PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
            P  WQ + ++ +D +                + A    GKT ++ + M  ++       +
Sbjct: 754  PDAWQRKVLDTIDANNS------------LMVVAPTSAGKTFISFYAMKKILQANDDDVL 801

Query: 111  ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
            + +A ++  +        +++               +           +  + +     T
Sbjct: 802  VYVAPTKALVNQIAAEVAARYSKSYTREGKSVWAIHTRDYRVNNPTGCQVLVTVPHVLQT 861

Query: 171  ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
            +     + +RP  +          +  DE        +  +      L      I  S T
Sbjct: 862  MLLAPSNSDRPSAW----ARRVKRIIFDEVHCIGQAEDGIVWEQLLLL-APCPIIALSAT 916

Query: 231  RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290
                G F+D                  V     G+   ++      SD+ R  +     Q
Sbjct: 917  VGNAGEFHD---------------WLAVSQAQKGYKMELVVHNARYSDL-RKFVYCPPKQ 960

Query: 291  QEVNNF-----IPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHI 345
             +++       +P   I++   R        P+    DI     D   +  R    +   
Sbjct: 961  LKMDVLAKQDQLPIPGIDQGEERNPRFFFTHPIAALLDINRGSLDDVSLEPRDCWTL--- 1017

Query: 346  FDWSAKLIQETNQEGCPVGSSI 367
              W      +T     PV  S+
Sbjct: 1018 --WKCMDKHQTTD--FPVAKSL 1035


>gi|319427942|gb|ADV56016.1| Protein of unknown function DUF3427 [Shewanella putrefaciens 200]
          Length = 1055

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 61/226 (26%), Gaps = 28/226 (12%)

Query: 10  KLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSN 69
               E       A       N +      G +        +P   Q E +E +       
Sbjct: 279 WQSNEFELFSGDANSKEKLNNALKEAKGSGTESSSFHFDIKPFAHQREILEQLA------ 332

Query: 70  VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129
           V  S    FK  I A  G GKT ++A+         P  + + +A+ +      L   +S
Sbjct: 333 VERSVHGRFKNLIVAATGTGKTIISAFDFARFYKLHPEANFLFVAHRQ----EILQQALS 388

Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189
            +  +L +  + E+      P+ +                 +     S       +    
Sbjct: 389 AYRGVLKNNQFGELWVAEHKPNSYKH---------------LFASIQSLNLQLDNLPLAA 433

Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
                +  DE             G      P     +T+   R +G
Sbjct: 434 DFYDYIVIDEVHHVAANSY---RGLLAHFEPTILLGLTATPERHDG 476


>gi|296274267|ref|YP_003656898.1| type III restriction protein res subunit [Arcobacter nitrofigilis
           DSM 7299]
 gi|296098441|gb|ADG94391.1| type III restriction protein res subunit [Arcobacter nitrofigilis
           DSM 7299]
          Length = 1044

 Score = 48.0 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 58/185 (31%), Gaps = 28/185 (15%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P  +Q E +E ++              FK  I A  G GKT ++A+      +      +
Sbjct: 318 PFHYQEEILEQLEAQ------RKIHNRFKNLIVAATGTGKTVISAFDYKRFKNLNSKAKL 371

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + +A+ +  LK  L                       L  + +    ++    I ++H  
Sbjct: 372 LFVAHRKEILKQAL-----------------ATFRGVLRDNNFGELWVDGETAISNEHLF 414

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
           ++ +T      +  +     +   +  DE                 + NP     +T+  
Sbjct: 415 VSVQTLQNNIGN--LNLSKEYYDFIIIDEVHHISANSY---RPILEKFNPKILLGLTATP 469

Query: 231 RRLNG 235
            R++ 
Sbjct: 470 ERMDN 474


>gi|322412526|gb|EFY03434.1| terminase large subunit [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 435

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/269 (13%), Positives = 73/269 (27%), Gaps = 23/269 (8%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
             ++  +   RG  K+   A   +  +      +++ I       K + + +     + L
Sbjct: 33  NFYRV-VKGSRGSKKSKTTALNFVVRLLKYEWANLLVIRRYSNTNKQSTYTDFKWACNQL 91

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
              H F+                   + + +    I  R   +E   T +          
Sbjct: 92  KVSHLFKFNES------------LPEITVKATGQKILFRGLDDELKITSITVDVGALCWA 139

Query: 196 FNDEASGTPDI-----INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NIPLED 247
           + +EA           + +SI G     +  +   +T N      W   +F        D
Sbjct: 140 WFEEAYQIETEDKFSTVVESIRGTLDVPDFFKQITVTFNPWSERHWLKRVFFDEETKRAD 199

Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
                   R  E +D          Y  +   ARI   G++   E   F     ++  + 
Sbjct: 200 TFSGTTTFRVNEWLDDVDKRRYEDLYKTNPRRARIVCDGEWGVAEGLVFDNFEVVDFDVE 259

Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
           +            G D        T++  
Sbjct: 260 KTIQRIKETS--AGMDFGFTQDPTTLICV 286


>gi|238027628|ref|YP_002911859.1| Bbp25 [Burkholderia glumae BGR1]
 gi|237876822|gb|ACR29155.1| Bbp25 [Burkholderia glumae BGR1]
          Length = 486

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 5/74 (6%)

Query: 276 DSDVARIEILGQFPQQEVN---NFIPHNYIEEAMSREAIDDLYAPLI--MGCDIAGEGGD 330
              +    + G F     +     IP  ++  A  R          +  +G D+A  G D
Sbjct: 256 PEPLRSKMLYGDFAAGREDDPWQVIPSEWVRLAQERWRARSRPRIPMTALGVDVARGGQD 315

Query: 331 KTVVVFRRGNIIEH 344
           +++   R GN  + 
Sbjct: 316 QSIYTPRYGNWFDE 329


>gi|30089892|ref|NP_839922.1| putative terminase large subunit [Lactococcus phage P335 sensu
           lato]
 gi|21954681|gb|AAM83070.1|AF489521_31 putative terminase large subunit [Lactococcus phage 4268]
          Length = 646

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 44/372 (11%), Positives = 101/372 (27%), Gaps = 57/372 (15%)

Query: 15  LHEMLMHAECVLSFKNFVMRF-----FPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSN 69
           L ++         F   V        F            ++   WQ   +  +       
Sbjct: 67  LQDLKRIGNEDFPFNYEVKHVKRLMKFSKMAPNVDTMEPTKLMEWQKFMLSLL---IGWR 123

Query: 70  VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129
                    +  IS GRG GKT + A +M +            + +     ++ L + ++
Sbjct: 124 NKEGGKRFSRAIISVGRGQGKTYMLAILMAYSFF---------VESRGLSNQDFLVSSIN 174

Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI--TCRTYSEERPDTFVGP 187
              +   + +   M ++    + W     +  + + +    +            +     
Sbjct: 175 AKQTGKLYGYLKSMINVLRTINPWKNIADKTDLSLQADKIIMRNHNNVIRPISHEAGQYD 234

Query: 188 HNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL 245
            + H      DE       + I+K + G     N     I T+       +  D   +  
Sbjct: 235 -SYHFTTAIFDEIGEVKSREKISKIVSGQVKVPNRQFVQISTAYPDPTVPFHEDEKMLQQ 293

Query: 246 -------EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV------------------- 279
                   D   Y     + + +D  +      +     D+                   
Sbjct: 294 AMEQDFLRDADTYLCLIWSNDSLDETYKPETWVKSNPLLDLASEHDNLMQGLLDKRDNDV 353

Query: 280 -------ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKT 332
                   + + L  +   ++++++    +E+A+  E          +G D +    D T
Sbjct: 354 LTGAVHDFQCKNLNMWLSSDIDSYLNLADVEKAIVPEFNI-YGQRCYVGVDYSMS-SDNT 411

Query: 333 VVVFRRGNIIEH 344
            V F    + E 
Sbjct: 412 AVAFVYPYVSEE 423


>gi|315575102|gb|EFU87293.1| conserved hypothetical protein [Enterococcus faecalis TX0309B]
 gi|315582529|gb|EFU94720.1| conserved hypothetical protein [Enterococcus faecalis TX0309A]
          Length = 407

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 54/238 (22%), Gaps = 26/238 (10%)

Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
           +   +   + I + +    L+                R   E            ++    
Sbjct: 1   MAGGKKDTTDIIMQHVTDTLQTV---------DESIARKLLEPVDKLERLQTGLSKRKIS 51

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI--LGFFTEL 218
             G  S         +   +                 DE++   +     +    F    
Sbjct: 52  FSGGGSIEGISLGEHFKGNKSGNQAIGRGGD---YIIDESAFVSNETYAELGRRNFANVD 108

Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISR-----Y 273
             N      SN     G FYD         K   +    V           I +     +
Sbjct: 109 GKNYLSFEISNP-HNKGRFYDKLTQ-ENIPKGMLVVWADVRTAFEEDRVKSIEQVISSEF 166

Query: 274 GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDK 331
             +    +   L + P +  +        E     E   +      +G D A +G DK
Sbjct: 167 FQNKSTCQRYFLCELPDENEDGMFGTPQTE-----EEHTEKNWEYFLGVDSAYKGKDK 219


>gi|291550695|emb|CBL26957.1| Predicted ATPase related to phosphate starvation-inducible protein
           PhoH [Ruminococcus torques L2-14]
          Length = 479

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/178 (12%), Positives = 47/178 (26%), Gaps = 7/178 (3%)

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GMSIICIANSETQLK 121
                +           +    G  KT  +  + L  +   P      I+    +  Q  
Sbjct: 264 FLQEALMQPAEKAPLVIVKGMAGTSKTFYSLAVGLEKLMNHPTGEYRKILVCRPN-AQFD 322

Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
             +          +       + +L         E  +    +  K   I  R + +   
Sbjct: 323 EGIGFLPGDEQEKISPLMRPVLDNLEQLLDSNEDERYKDEEVLRDKVEEIYSRGFIQAEA 382

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
             F+   +     +  DEA  T       I G  T    +   I+  +  +++  F D
Sbjct: 383 LNFIRGRSIVKTYLIIDEAQNTTPDQ---IKGIITRAGKDTKIILLGDPNQIDRPFLD 437


>gi|298385368|ref|ZP_06994926.1| bacteriophage terminase large subunit [Bacteroides sp. 1_1_14]
 gi|298261509|gb|EFI04375.1| bacteriophage terminase large subunit [Bacteroides sp. 1_1_14]
          Length = 622

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/261 (13%), Positives = 78/261 (29%), Gaps = 21/261 (8%)

Query: 31  FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
           FV      G +   L   ++P   Q  F+E ++               +  +   R  G 
Sbjct: 33  FVYIKNKGGGEDV-LFRLTRP---QRRFVERLEK------LRIAGKPIRIILLKARQWGG 82

Query: 91  TTLNAWMMLWLISTRP-GMSIICIANS---ETQLKNTLWAEVSKW-LSMLPHRHWFEMQS 145
           +T +   M WL      G++ + IA+      ++K+     + K+ + ML        ++
Sbjct: 83  STTSQLYMAWLQLLHKIGLNSLIIAHQGAGSDEIKDMFDRMIKKYPVEMLHKIDELYNEN 142

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
                    +  + +    + K    T       R   +   H +        E     D
Sbjct: 143 EPKLVGVGKSGSIYRVPQRNCKIKIGTAERPDSCRGGDYNLVHLSEVGIWKATEGKKPED 202

Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE---DWKRYQIDTRTVEGID 262
           I+  +  G   +       +  S       +F+  +    +    ++   +    +E   
Sbjct: 203 IVRSACSGILLKPY--TMIVYESTANGTGNFFHREYTAAKKGDSQFEAMFVSWFDIEQYT 260

Query: 263 SGFHEGIISRYGLDSDVARIE 283
             F+     + G    + +  
Sbjct: 261 LAFNSD-KEKQGFAEWLYKNR 280


>gi|224535178|ref|ZP_03675717.1| hypothetical protein BACCELL_00039 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224523228|gb|EEF92333.1| hypothetical protein BACCELL_00039 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 571

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/278 (12%), Positives = 71/278 (25%), Gaps = 37/278 (13%)

Query: 79  KCAISAGRGIGKTTLN----AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
               SAGRG+ K+T+     +   ++ +   PG ++   AN+ T L + +   V     +
Sbjct: 36  NLITSAGRGMAKSTVIQARRSADCVYDM---PGAALAFAANTYTNLTDNIMPAVKTGWEL 92

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
           +         S    P  W            +               D          + 
Sbjct: 93  MGLYEGVHYISNKRPPESWRKRCSIIVDDYKNTISFWNGSIIFLGSLDHPSLLAGKSVVH 152

Query: 195 VFNDEASGTPDIINKSILGFFTE-----LNPNRFWIMTSNTRRL------NGWFYDIFNI 243
           +F DEA    D      +           + + F  +T  T           W++    +
Sbjct: 153 LFFDEAKYDQDKKVNRAMPILRGDAIRYGHSHYFLGVTITTDMPDVLEGEYDWYFRYVKL 212

Query: 244 PLE----------------DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
                                K  + + +     D          Y   + +   +    
Sbjct: 213 MKPERILKIVQAAGELNELRIKLVREENKESPSPDKLRRIKKKIIYYEAALLKMRKGESY 272

Query: 288 FPQQEVNN---FIPHNYIEEAMSREAIDDLYAPLIMGC 322
           F           +   YI++  +       +   ++G 
Sbjct: 273 FINASSFTNIDILTIGYIKQLFNGTLELHEFKKSVVGM 310


>gi|320590344|gb|EFX02787.1| dead deah box DNA helicase [Grosmannia clavigera kw1407]
          Length = 2423

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 36/154 (23%), Gaps = 22/154 (14%)

Query: 58   FMEAVDVHCHSNVNNSNPTIF--------KCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
             +EA+        N     IF           + +  G GKT      M W    RPG  
Sbjct: 1160 VLEAIYAERFRFFNPMQTQIFHTLYHSSANVLLGSPTGSGKTVAAELAMWWAFRERPGSK 1219

Query: 110  IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
            ++ IA  +  ++      +  W   L       +  L                    +  
Sbjct: 1220 VVYIAPMKALVRER----IKDWGRRLAGPAGLRLVEL--------TGDNTPDTRTIGEAD 1267

Query: 170  TITCRTYSEERPDTFVGPHN--THGMAVFNDEAS 201
             I       +                 V  DE  
Sbjct: 1268 VIVTTPEKWDGISRSWQTRGYVRKVSLVIIDEIH 1301


>gi|1107479|emb|CAA62591.1| ORF5 [Streptomyces phage phiC31]
          Length = 138

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 4/88 (4%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG---MS 109
            WQ E +    V                 +   R  GK+T+ A +ML+ +    G     
Sbjct: 51  PWQRELLIDAYVLTQDTFGRWRRKHRTVVVCVARKNGKSTIAAAIMLYHLIADRGDAQRQ 110

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPH 137
           II  AN   Q +  ++    + ++  P 
Sbjct: 111 IIAAANDRNQAR-MVFDSAKQMVNASPK 137


>gi|86130662|ref|ZP_01049262.1| type I site-specific deoxyribonuclease [Dokdonia donghaensis
           MED134]
 gi|85819337|gb|EAQ40496.1| type I site-specific deoxyribonuclease [Dokdonia donghaensis
           MED134]
          Length = 1168

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 67/243 (27%), Gaps = 36/243 (14%)

Query: 10  KLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVH---- 65
             ++EL  ++   E     +              P++       +Q+  + +V  H    
Sbjct: 335 YTKKELQTIIWRRENRQDIRA------------MPIDMAITDRPYQMRAIRSVAEHWAGS 382

Query: 66  CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW 125
                           + A  G GKT     +   L+       I+ +A+  + +K    
Sbjct: 383 DTRTGQLIGTNRRALLVLA-TGTGKTRTAISLSKILLEANWAKRILFLADRISLVKQA-- 439

Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185
                ++++LP      +               + +  I    Y          R +   
Sbjct: 440 --KRNFVNLLPDHSTVNLIETK----------DDTNARIVFSTYKTLMGLIDSSRSEDGR 487

Query: 186 GPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW-FYDIFNIP 244
                H   +  DEA         +      E     F  +T+  +       YD+F + 
Sbjct: 488 FYGVGHFDLIIVDEAH----RSIYNKYQTIFEYFDGLFLGLTATPKGSIDHNTYDVFGLA 543

Query: 245 LED 247
            ++
Sbjct: 544 KDN 546


>gi|139645|sp|P16732|TRM3_HCMVA RecName: Full=Tripartite terminase subunit UL15 homolog; AltName:
           Full=DNA-packaging protein UL89; AltName: Full=Terminase
           large subunit
 gi|1813970|emb|CAA35363.1| HCMVUL89 [Human herpesvirus 5]
 gi|27808816|tpg|DAA00186.1| TPA: DNA packaging terminase subunit 1 [Human herpesvirus 5]
          Length = 674

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 48/141 (34%), Gaps = 17/141 (12%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GKT     ++ +L+    G+SI  +A+ +  +   +  EV         RH F   
Sbjct: 213 PRRHGKTWFIIPIISFLLKHMIGISIGYVAHQKH-VSQFVLKEVE-----FRCRHTFA-- 264

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                   +  E  +  + ID +    T    S    ++       +   +  DEA    
Sbjct: 265 ------RDYVVENKDNVISIDHRGAKSTALFASCYNTNS---IRGQNFHLLLVDEAHFIK 315

Query: 205 DIINKSILGFFTELNPNRFWI 225
                +ILGF  +      +I
Sbjct: 316 KEAFNTILGFLAQNTTKIIFI 336


>gi|221316528|ref|ZP_03598333.1| phage-related terminase [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
          Length = 489

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 77/280 (27%), Gaps = 36/280 (12%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           K  +  GR  GK+ L A + + L+   P  S       + +L + +  EV + ++     
Sbjct: 30  KSVLLIGRKSGKSFLVALIFILLLLIEPEYSEFYSVAPDKELSSIVKKEVEQTITASHPS 89

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG------ 192
              + Q           +   + + + +    +  R  +    D      N +       
Sbjct: 90  IQKQFQITRSEVRCLLTK--SKFIPLANSENRMDGRKANVFVADEVGALRNRYPIDAMQS 147

Query: 193 --MAVFNDEASGTPDIINKSILGFFTEL------------NPNRFWIMTSNTRRLNGWFY 238
             M + N           +S+    TE             +    + +         W  
Sbjct: 148 SQMNMVNRTGILIS-TAYESLNNPMTEEVEYAQKVLDDLIDDPTLFALLYKPDDPKDWLS 206

Query: 239 DIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV---ARIEILGQFPQQEV-N 294
           D   I              V   +  + +                  + +  F   +   
Sbjct: 207 DKSLIEAN-------PLAEVLEDNLEYLKKQRRTALDMPSSKKNFLTKHMNIFVDGDDSE 259

Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334
            +IP + +++ M           + +G D++    D T V
Sbjct: 260 VYIPSDELKKNMITTYDWT-GREVFVGVDLSQT-TDNTAV 297


>gi|298695171|gb|ADI98393.1| Terminase large subunit, phage associated [Staphylococcus aureus
           subsp. aureus ED133]
          Length = 564

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/283 (9%), Positives = 75/283 (26%), Gaps = 55/283 (19%)

Query: 82  ISAGRGIGKTTLNAWM----MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
           IS  R  GK+ + + M    +L+    +    I   +++  Q +   +   S+ ++++  
Sbjct: 96  ISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQTI-FKMASQQVNLMRS 154

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
           +  F  +   +          +  +            +      +               
Sbjct: 155 KSKFIREKTDVR---------KTDIEDILSSSVFAPLS------NNPDAVDGKDPTVAIL 199

Query: 198 DEASGTPDIINKSILGF-FTELNPNRFWIMTSNTRRLNGWFYDIF--------------- 241
           DE +  PD    S      T        ++++    LN   Y  +               
Sbjct: 200 DELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEEVRADN 259

Query: 242 -----------NIPLEDWKRYQID----TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
                          ++ K  +      ++          +  I             ++ 
Sbjct: 260 YFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNIKSDIQDELEKGTSYHKILIK 319

Query: 287 QFP---QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAG 326
            F     Q  ++ +     E+A +     +    + +G D++ 
Sbjct: 320 NFNLWQAQREDSLLDIEDWEQATTNMPNIN-GKDVYIGVDLSR 361


>gi|296502322|ref|YP_003664022.1| terminase large subunit [Bacillus thuringiensis BMB171]
 gi|296505546|ref|YP_003667246.1| terminase large subunit [Bacillus thuringiensis BMB171]
 gi|296323374|gb|ADH06302.1| terminase large subunit [Bacillus thuringiensis BMB171]
 gi|296326598|gb|ADH09526.1| terminase large subunit [Bacillus thuringiensis BMB171]
          Length = 561

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/277 (11%), Positives = 67/277 (24%), Gaps = 31/277 (11%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP-- 136
           KC +   R  GK+ L A ++L L+   P  S       +  L + +  E++K L   P  
Sbjct: 104 KCVLLIARKSGKSFLTALLILILMLIEPKHSEFYSVAPDRDLSSIIKKEIAKMLDASPGI 163

Query: 137 ------HRHWFEMQSLSLHPSGWYAELLEQSMGIDSK---HYTITCRTYSEERPDTFVGP 187
                                            + +          +T            
Sbjct: 164 SKHFKTVLKEVRCLITKNKFEPLATSNDRMDGRLATGFVADEVGALKTSYPIEAMESSQL 223

Query: 188 HNTHGMAVFNDEA------SGTPDIINKSILGFFTEL-NPNRFWIMTSNTRRLNGWFYDI 240
           +  + + +    A           I             N    + +      +  W  D 
Sbjct: 224 NTLNRLGILISTAYDTMHNPMVDQIEF--AQKVMDGHINDETLFALLYKPDNMKDWTSDE 281

Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV--ARIEILGQFPQQE-VNNFI 297
             +              +        +       + S     + + L  F   +    ++
Sbjct: 282 ALLQAN------PLAIELPENLDELKKKRDKAIAMPSAQTNFKTKHLNIFVDGDIAEVYV 335

Query: 298 PHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334
             + + +             + +G D+A +  D T V
Sbjct: 336 STDDLRKGKISNFDW-EGRKVHIGVDLA-QSNDNTAV 370


>gi|330911327|gb|EGH39837.1| phage terminase, large subunit [Escherichia coli AA86]
          Length = 555

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 73/253 (28%), Gaps = 39/253 (15%)

Query: 86  RGIGKTTLNAWMMLWLIS---TRPGMSIICIANSETQLKNTL--WAEVSKWLSMLPHRHW 140
           R  G T   A   +   +    R G ++  + + +      +   A  S+  + L     
Sbjct: 68  RRTGLTWAEAGRNVITAAKPKRRGGRNVFYVGSKQEMALEYISACALFSRAFNQLADADV 127

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
           +E             E+L   +   +  + I   +     P    G        V  DEA
Sbjct: 128 YEQT---FWDRNKKEEILTYMIRFPNSGFKIQALSSR---PSNLRGLQGD----VVIDEA 177

Query: 201 SGTPDIINKSILGF--FTELNPNRFWIMTSN-TRRLNGWFYDIFNIPLEDWKRYQIDTRT 257
           +   + +++ +      T        I T N    L   +        +D+  ++I    
Sbjct: 178 AF-HESLDELLKAAMALTMWGARVRIISTHNGVDNLFNQYIQEAREGRKDYSVHRITLDD 236

Query: 258 ------------------VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299
                                 +  + + +        D    E     P++    +IPH
Sbjct: 237 AIADGLYRRICYVTGQEWSPESEQKWRDDLYKNAPTREDA-DEEYGCI-PKKSGGAYIPH 294

Query: 300 NYIEEAMSREAID 312
             IE AMSR+   
Sbjct: 295 ALIEMAMSRDIPI 307


>gi|329666845|gb|AEB92793.1| putative RNA helicase [Lactobacillus johnsonii DPC 6026]
          Length = 461

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 59/234 (25%), Gaps = 23/234 (9%)

Query: 37  PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
           P    G    +F +P + Q   + A+                   + A  G GKT     
Sbjct: 15  PELQAGLEKINFKKPTKVQSSVIPAL------------LNKKNVVVQAATGSGKTHAYLI 62

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
            +L +I     ++   +     +L N L+    +       R    +     +  G    
Sbjct: 63  PILNMIDESAPVTQAIVTAPSRELANQLYKVARQ------LRDASGLNISIEYLGGGNDR 116

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG-TPDIINKSILGFF 215
             +           I           +    +  +  A   DEA           +    
Sbjct: 117 NRQIEKAESRAPQLIIATPGRLHDFASKKFINLENVKAFIIDEADMTLDMGFLSQMDEIM 176

Query: 216 TELNPNRFWIMTSN--TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267
           ++L+        S     +L  +     + P  ++            I +   +
Sbjct: 177 SKLDKKAVLGAFSATIPVKLENFLRKYMSKP--EFIVIDNPAIIAPTIQNDLID 228


>gi|327399574|ref|YP_004340443.1| DEAD/DEAH box helicase domain-containing protein [Hippea maritima
           DSM 10411]
 gi|327182203|gb|AEA34384.1| DEAD/DEAH box helicase domain protein [Hippea maritima DSM 10411]
          Length = 526

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/303 (12%), Positives = 73/303 (24%), Gaps = 39/303 (12%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
            F +P   Q + +  +       V             A  G GKT      ++ L+  + 
Sbjct: 24  GFEKPTPIQEKVIPLILQSSKDLVAE-----------APTGTGKTLAFGLPLIDLLKEKT 72

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
           G     I     +L   +  E++ +      + +      S+               +  
Sbjct: 73  GYVQAVILAPTRELAIQVCDEINAFKGKKRLKAFPIYGGQSIELQ---------KRRLKE 123

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNRFWI 225
               +                + +       DEA           I    T  NP +   
Sbjct: 124 GVDIVVGTAGRIIDHINRKTLNLSKIDYFILDEADEMLNMGFIDDIKEILTHTNPTKNMF 183

Query: 226 MTS-NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
           M S             +    E  +  +    T +       +          D      
Sbjct: 184 MFSATMPEEIKRLAKQYMKKPEFVRIEKSKMLTSQIYFEVKEQDKFEALCRIRDAVEDFY 243

Query: 285 LGQFPQQEVNN------FIPHNYIEEAMSREAIDDLYAPL-----------IMGCDIAGE 327
              F + +V+        I   Y  +A+  +   D    +           ++  D+A  
Sbjct: 244 GLIFCKTKVDAQNVANKLIDRGYYADAIHGDLSQDKRERILKRFRDKKINMLVATDVAAR 303

Query: 328 GGD 330
           G D
Sbjct: 304 GID 306


>gi|296103195|ref|YP_003613341.1| hypothetical protein ECL_02853 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295057654|gb|ADF62392.1| hypothetical protein ECL_02853 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 591

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/341 (11%), Positives = 78/341 (22%), Gaps = 56/341 (16%)

Query: 38  WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97
           +               W  E +     H   N+           I   R IG T   A+ 
Sbjct: 126 YKKNDISSLTQEDFDTWAEEHLFEYQKHLRRNIGQLVRN-----ILKSRQIGATWYFAFE 180

Query: 98  MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
                       I   A+          AEV +   +     +F +              
Sbjct: 181 AFENAVMTGDPQIFLSASKAQ-------AEVFRSYIVNIAEQYFGITLT--------GNP 225

Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217
           +  S G + +  +    T        +   +         +E +      +K    +F+ 
Sbjct: 226 IRLSNGAELRFLSTNKNTAQSYSGHLYCDEYFWVPNFAKLNEVASAMATHDKWRTTYFST 285

Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPL-----EDWKRYQIDTRTVEGIDSGFHEGIISR 272
            +               G  +   +          +   +   R        +   +   
Sbjct: 286 PSAKTHQAY----PFWTGEEWKQGSRKRAAIKFPLFDEMRDGGRLCPDGQWRYVITMEDA 341

Query: 273 YGLDSDVARIE--------------ILGQFPQQEVNNFIPHNYIEEA---MSREAIDDLY 315
                ++A IE               +  F     ++    + +E     M      D  
Sbjct: 342 IAGGFNLANIEKLRNRYNTATFDMLYMCVFVD-SKDSVFSFSDLEACGVEMDTWQDHDPD 400

Query: 316 A-------PLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS 349
           A       P+  G D A  G D +  V      +  +  + 
Sbjct: 401 AKRPFGDRPVWGGFDPARSG-DLSCFVIV-APPMFAVEKFR 439


>gi|154482773|ref|ZP_02025221.1| hypothetical protein EUBVEN_00450 [Eubacterium ventriosum ATCC
           27560]
 gi|149736368|gb|EDM52254.1| hypothetical protein EUBVEN_00450 [Eubacterium ventriosum ATCC
           27560]
          Length = 614

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 57/236 (24%), Gaps = 31/236 (13%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ E M+A+             ++ K  + +   +GKT       +         +I+C
Sbjct: 51  PWQREIMDAITD----------ISVEKVVVMSAAQMGKTDAFLLNTIGYYMHYDPCTILC 100

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           +  + +  +            ++P           ++     A              T+T
Sbjct: 101 MQPTLSLAETMSKD------RLMPMVRDTPALRDKINEKSRTAGNTIFKKAFPGGRITMT 154

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP-----NRFWIMT 227
                    ++     +     +  DE    P                     NR  + T
Sbjct: 155 G-------ANSPTELRSRPIRILLADEIDAYPPTAGAEGDPLILAGKRLTTYWNRKEVDT 207

Query: 228 SNTR-RLNGWFYDIFNIPL-EDWKRYQIDTRT-VEGIDSGFHEGIISRYGLDSDVA 280
           S    +        +     E+W               S     + +   ++S   
Sbjct: 208 STPTIKGASRIEMEYEHSTMEEWNVPCPSCGELQPLEWSNLIYKVDADGEIESTTY 263


>gi|92115960|ref|YP_575689.1| phage terminase [Nitrobacter hamburgensis X14]
 gi|91798854|gb|ABE61229.1| phage Terminase [Nitrobacter hamburgensis X14]
          Length = 542

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/327 (13%), Positives = 90/327 (27%), Gaps = 58/327 (17%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR---PGM 108
             WQ   +  +    H +      T     +   RG  KT+L A + L         PG 
Sbjct: 49  DPWQERIVRRIYGPRHDDGRRIVNT---VVMLLPRGNRKTSLGAALALLHTIGPERMPGS 105

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            +I  A+   Q     + E    +     +   +          + A    + +      
Sbjct: 106 EVIFSASDRKQ-SGIAFKEARGIVQA--DKRLVKAT------KVYDAFNSAKKIAYPKDS 156

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMT 227
             +   +      +            V  DE        +   +     +++ +   + T
Sbjct: 157 VELEIISADAPSSE------GRTPAFVLADETHIWRGKDLWTVLTNGLDKIDNSLLVVTT 210

Query: 228 SNTRRLNGWFYDIFNIPLE----------------------DWKRYQIDTRTVEGIDSGF 265
           +  R  +   Y+I +   +                      D+   ++  R   G   G+
Sbjct: 211 TAGRGTDNIGYEIIDRARKIARGEIVDPTVLPVLFEAEPDCDYTSEEVWRRVNPGSPHGY 270

Query: 266 ---------HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM-SREAIDDLY 315
                     +         S + R + L  +     + F+     +E     +      
Sbjct: 271 PSIEGFRRHVKRAQDNPTERSSLKRYK-LNIWEDSSSSPFVDMLVYDEGEGEIDVAALEG 329

Query: 316 APLIMGCDIAGEGGDKTVV--VFRRGN 340
            P  +G D++    D +VV   FR G+
Sbjct: 330 QPCWLGVDLS-SSIDLSVVIACFRDGD 355


>gi|193071720|ref|ZP_03052620.1| putative phage terminase, large subunit [Escherichia coli E110019]
 gi|192954982|gb|EDV85485.1| putative phage terminase, large subunit [Escherichia coli E110019]
          Length = 553

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/261 (12%), Positives = 56/261 (21%), Gaps = 27/261 (10%)

Query: 23  ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82
           E V  F  F        +KG       +   WQ      +             T     +
Sbjct: 43  EVVERFIAFSRV--CPHVKGAMRGSPIELEPWQQFAFACILGFKVKATGRRKYTSAFIEV 100

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
              R   K+T  A +  W +    G   I  A         ++ +  +            
Sbjct: 101 --PRKNAKSTTAAILANWFLIMENGQQDIYTAAVSRDQARIVFDDARQMC--------LL 150

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
            + L    +    +++        K       T     P                DE   
Sbjct: 151 SRPLRRRVNIQAHKVIHPKSNSLLKPLAAKAATIEGTNPS-----------LAIVDEYHL 199

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
            PD    S L       P       + +                D+    +D   V    
Sbjct: 200 HPDNGVYSALELGMGARPEGLLFAITTSGSNVVSACKQHY----DYCCQILDGEEVNESM 255

Query: 263 SGFHEGIISRYGLDSDVARIE 283
                 +     +D     I+
Sbjct: 256 FVLIYELDDESEVDDPAMWIK 276


>gi|301622529|ref|XP_002940588.1| PREDICTED: Fanconi anemia group M protein-like, partial [Xenopus
           (Silurana) tropicalis]
          Length = 595

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 65/236 (27%), Gaps = 15/236 (6%)

Query: 39  GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98
           GI+  P    S    W       +  +  +   +    +    +    G+GKT + A +M
Sbjct: 192 GIENLPGFDLSAGSVWIYPTNYLIRDYQFN--ISYTALLQNTLVCLPTGLGKTFIAAVVM 249

Query: 99  LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
                  P   I+ +A ++  +      ++     ++        +      +    ++ 
Sbjct: 250 YNFYRWYPSGKIVFMAPTKPLVAQ----QIEACFRVMGIPQDHMAEMTGSTQAQNRKDMW 305

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG-TPDIINKSILGFFTE 217
           E+          +         P +           +  DEA     +     ++   T 
Sbjct: 306 EKHRVFFLTPQVMVNDLTRGACPAS-------EIKCLVIDEAHKALGNHAYCQVVRELTN 358

Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRY 273
                  +  S T   +          L    + ++ +     I    HE  + ++
Sbjct: 359 YTNQFRILALSATPGGDTKSVQQVVSNL-LISQIELRSEDSPDIQPYSHERQLEKF 413


>gi|153826515|ref|ZP_01979182.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-2]
 gi|149739695|gb|EDM53902.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-2]
          Length = 423

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/318 (12%), Positives = 77/318 (24%), Gaps = 50/318 (15%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           +      FS+P + Q E +                       SA  G GKT       L 
Sbjct: 16  EAIEEMGFSRPTQVQAEAIPQALDG------------RDVLASAPTGTGKTAAFVIPALQ 63

Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
            +   P        I+ +  +         AE ++ L+     + F +     +      
Sbjct: 64  YLLDFPRRKAGPARILILTPTRELAMQV--AEQAQALAKNTRLNIFTITGGVQYQEHADI 121

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
               Q +        +                       +  DEA    D+     +   
Sbjct: 122 LATTQDI--------VVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173

Query: 216 TELNPNRFWIMTSNTRRLN------------GWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
           +     R   +  +                    +     P  + K+        + +  
Sbjct: 174 STECRWRKQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPH 233

Query: 264 --GFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AID 312
                + I++     S V     E L     +     IP  +I  E    R         
Sbjct: 234 KVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFR 293

Query: 313 DLYAPLIMGCDIAGEGGD 330
           +    +++  D+A  G D
Sbjct: 294 EGDVNILLATDVAARGID 311


>gi|21283130|ref|NP_646218.1| terminase large subunit [Staphylococcus aureus subsp. aureus MW2]
 gi|66395511|ref|YP_239856.1| ORF003 [Staphylococcus phage 42E]
 gi|296276328|ref|ZP_06858835.1| terminase large subunit [Staphylococcus aureus subsp. aureus MR1]
 gi|297207827|ref|ZP_06924261.1| terminase large subunit [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300911913|ref|ZP_07129356.1| terminase large subunit [Staphylococcus aureus subsp. aureus TCH70]
 gi|21204570|dbj|BAB95266.1| terminase large subunit [Staphylococcus aureus subsp. aureus MW2]
 gi|62636004|gb|AAX91115.1| ORF003 [Staphylococcus phage 42E]
 gi|296887543|gb|EFH26442.1| terminase large subunit [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300886159|gb|EFK81361.1| terminase large subunit [Staphylococcus aureus subsp. aureus TCH70]
          Length = 563

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 91/348 (26%), Gaps = 60/348 (17%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
             WQ   + ++    H           +  I  GR  GKTT  + +  + +S     G  
Sbjct: 81  QPWQHFIIGSLFGWVHK--ETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAE 138

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I  +AN   Q +  L+ E    +   P                   +L E    +  + +
Sbjct: 139 IHLLANVMKQAR-ILFDESKAMIKASP-------------------KLRENFRPLRDEIH 178

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTS 228
                +    +          +      DE     D  +   I              +T+
Sbjct: 179 YDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITT 238

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRT----------------------VEG----ID 262
              +L+G   ++     +   R   D RT                             ID
Sbjct: 239 AGYQLDGPLVNMVEAGRDTLDRIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSID 298

Query: 263 SGFHEGIISRYGLDSDV---ARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPL 318
               +    +     D       +    F   +  +FI +  +++        +    P 
Sbjct: 299 LDEMKEEWEKAKRTPDERGDFITKRFNIFANNDEMSFIDYPTLQKNNDIISLDELEGRPC 358

Query: 319 IMGCDIAGEGGDKTV----VVFRRGNIIEHIFDWSAKLIQETNQEGCP 362
            +G D++    D T          G +      W  K   E + E  P
Sbjct: 359 TIGYDLSET-EDFTAACATFALDNGKVAVLTHSWIPKHKVEYSNEKIP 405


>gi|284162190|ref|YP_003400813.1| hypothetical protein Arcpr_1081 [Archaeoglobus profundus DSM 5631]
 gi|284012187|gb|ADB58140.1| protein of unknown function DUF699 ATPase putative [Archaeoglobus
           profundus DSM 5631]
          Length = 768

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 71/237 (29%), Gaps = 42/237 (17%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW---MMLWLIST--RPGMS 109
           Q+  +E  + +                I+A RG GK+ +       ++W +    +  + 
Sbjct: 221 QVRVLELFEHYFDRKKERKA-----VVITADRGRGKSAVLGIVTPYLIWRMFKVLKRPVR 275

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I+ +A +   ++      +   +               +       E  +    ++SK+ 
Sbjct: 276 IMVVAPTPYAVQTYFKFLLKAMVR--------------VGMKFRVKESGKLITVVNSKYA 321

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP-DIINKSILGFFTELNPNRFWIMTS 228
            +          +        +   V  DEA+G    ++ K   G          W++ S
Sbjct: 322 RVEYVVPRRAMIEK------DYADIVIVDEAAGIDVPVLWKITEGVR--------WMIFS 367

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
            T          F+I    + +       VE      +E I    G   +    ++L
Sbjct: 368 TTIHGYEGAGRGFSI---RFLKRLESCEDVEIEKIHLNEPIRYGKGDPIEKWLYDVL 421


>gi|258539263|ref|YP_003173762.1| phage-related terminase large subunit [Lactobacillus rhamnosus Lc
           705]
 gi|257150939|emb|CAR89911.1| Phage-related terminase large subunit [Lactobacillus rhamnosus Lc
           705]
          Length = 567

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 92/305 (30%), Gaps = 57/305 (18%)

Query: 68  SNVNNSNPTIFKCAISAGRGIGKTTLNAWM-MLWLISTRPG---MSIICIANSETQLKNT 123
            +    N    +  IS  R  GK+ L A +  L+L+          I+  ANS  Q    
Sbjct: 87  RDKETGNRRYDRAYISMARKNGKSFLMADLGALYLLMENKPAMNREIVYTANSNAQA--- 143

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE-RPD 182
                            F+M S  L      ++ +   + I+                  
Sbjct: 144 --------------HLAFDMLSSGLRQVSKMSKSVRDRLKINRNEIIDLPSNSRAVPLAS 189

Query: 183 TFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
                          DE +    D I +++       + +   ++++    LNG  Y  +
Sbjct: 190 DLHSLDGYQSDLAIIDEFALARTDEILRTLKSGQINSDNSLLAVISTTGPDLNGPMYKEY 249

Query: 242 ---------NIPLEDWK--RYQIDTRTVEGIDSGFHEG-------IISRYGLDSDVARIE 283
                        + +    ++ D++    +   + +          ++    S  A ++
Sbjct: 250 KFVSKVLTGREQADRYFIAVFEQDSKDEAFVPETWEKSNPLLANTERAKTMRPSLQADVD 309

Query: 284 ILGQ--------------FPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329
           +  +              +     +++I  +  E+A+  E  D +   + +G D++    
Sbjct: 310 LAAKQGTLRPILVKNFNMWQSARADSYISLDDWEKAII-EPPDTMGKDVYIGLDLSKS-S 367

Query: 330 DKTVV 334
           D T +
Sbjct: 368 DLTSI 372


>gi|269202509|ref|YP_003281778.1| putative phage terminase, large subunit [Staphylococcus aureus
           subsp. aureus ED98]
 gi|262074799|gb|ACY10772.1| putative phage terminase, large subunit [Staphylococcus aureus
           subsp. aureus ED98]
          Length = 564

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/283 (9%), Positives = 75/283 (26%), Gaps = 55/283 (19%)

Query: 82  ISAGRGIGKTTLNAWM----MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
           IS  R  GK+ + + M    +L+    +    I   +++  Q +   +   S+ ++++  
Sbjct: 96  ISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQTI-FKMASQQVNLMRS 154

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
           +  F  +   +          +  +            +      +               
Sbjct: 155 KSKFIREKTDVR---------KTDIEDILSSSVFAPLS------NNPDAVDGKDPTVAIL 199

Query: 198 DEASGTPDIINKSILGF-FTELNPNRFWIMTSNTRRLNGWFYDIF--------------- 241
           DE +  PD    S      T        ++++    LN   Y  +               
Sbjct: 200 DELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEEVRADN 259

Query: 242 -----------NIPLEDWKRYQID----TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
                          ++ K  +      ++          +  I             ++ 
Sbjct: 260 YFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNIKSDIQDELEKGTSYHKILIK 319

Query: 287 QFP---QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAG 326
            F     Q  ++ +     E+A +     +    + +G D++ 
Sbjct: 320 NFNLWQAQREDSLLDIEDWEQATTNMPNIN-GKDVYIGVDLSR 361


>gi|118575834|ref|YP_875577.1| superfamily II helicase [Cenarchaeum symbiosum A]
 gi|118194355|gb|ABK77273.1| superfamily II helicase [Cenarchaeum symbiosum A]
          Length = 537

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 79/289 (27%), Gaps = 33/289 (11%)

Query: 31  FVMRFFPW-------GIKGKPLEHFSQPH-RWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82
           F     PW       G     L    +P   +Q+  +  +                +  +
Sbjct: 112 FGFFGVPWIEHRPDEGPPDIELVKAERPLFEYQIGAVSRIKDILEHEGG-------RVLL 164

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
               G GKT +   ++  L+   P   +I +A S  +L      E         +R    
Sbjct: 165 HVPTGGGKTRIAMRVVADLLLENPSSLVIWLAYS-EELCEQAIEEFKSAWRHTGNR---- 219

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP--HNTHGMAVFNDEA 200
              +S++      +         S                  +           V  DEA
Sbjct: 220 --DVSIYRLFGGHDTDVLGRECRSGLIVAGLSKVYRRARTNSMLLTTLADRASLVIIDEA 277

Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
                   K +LG+  E +      +++   R      +   +   ++   +  T     
Sbjct: 278 HQAIAETYKLVLGYLVEKHDVNLVGLSATPGRTWNSPLEDRKLA--EFFNEKKVTIETGT 335

Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF-----IPHNYIEE 304
               F   I   Y    ++ +I   G     ++        IP++ +++
Sbjct: 336 DPVSFL--IKDGYLAKPNIEQIRHDGMLTNSDMERIAKSLEIPNDILDK 382


>gi|121728399|ref|ZP_01681427.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V52]
 gi|147674594|ref|YP_001216154.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395]
 gi|153215838|ref|ZP_01950170.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 1587]
 gi|153802013|ref|ZP_01956599.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-3]
 gi|153829171|ref|ZP_01981838.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 623-39]
 gi|229512921|ref|ZP_04402388.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TMA 21]
 gi|229525313|ref|ZP_04414718.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae bv. albensis
           VL426]
 gi|229530466|ref|ZP_04419854.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 12129(1)]
 gi|254226532|ref|ZP_04920115.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V51]
 gi|254291900|ref|ZP_04962682.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae AM-19226]
 gi|262169959|ref|ZP_06037649.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC27]
 gi|262191213|ref|ZP_06049412.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae CT 5369-93]
 gi|297580786|ref|ZP_06942712.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC385]
 gi|121629333|gb|EAX61765.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V52]
 gi|124114555|gb|EAY33375.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 1587]
 gi|124122472|gb|EAY41215.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-3]
 gi|125620936|gb|EAZ49287.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V51]
 gi|146316477|gb|ABQ21016.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395]
 gi|148875360|gb|EDL73495.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 623-39]
 gi|150422186|gb|EDN14151.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae AM-19226]
 gi|227012485|gb|ACP08695.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395]
 gi|229332239|gb|EEN97727.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 12129(1)]
 gi|229338894|gb|EEO03911.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae bv. albensis
           VL426]
 gi|229350170|gb|EEO15123.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TMA 21]
 gi|259156570|gb|ACV96513.1| ATP-dependent RNA helicase SrmB [Vibrio fluvialis Ind1]
 gi|262021693|gb|EEY40404.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC27]
 gi|262032915|gb|EEY51454.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae CT 5369-93]
 gi|297535202|gb|EFH74037.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC385]
 gi|327483459|gb|AEA77866.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae LMA3894-4]
          Length = 423

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/318 (12%), Positives = 77/318 (24%), Gaps = 50/318 (15%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           +      FS+P + Q E +                       SA  G GKT       L 
Sbjct: 16  EAIEEMGFSRPTQVQAEAIPQALDG------------RDVLASAPTGTGKTAAFVIPALQ 63

Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
            +   P        I+ +  +         AE ++ L+     + F +     +      
Sbjct: 64  YLLDFPRRKAGPARILILTPTRELAMQV--AEQAQALAKNTRLNIFTITGGVQYQEHADI 121

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
               Q +        +                       +  DEA    D+     +   
Sbjct: 122 LATTQDI--------VVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173

Query: 216 TELNPNRFWIMTSNTRRLN------------GWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
           +     R   +  +                    +     P  + K+        + +  
Sbjct: 174 STECRWRKQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPH 233

Query: 264 --GFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AID 312
                + I++     S V     E L     +     IP  +I  E    R         
Sbjct: 234 KVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFR 293

Query: 313 DLYAPLIMGCDIAGEGGD 330
           +    +++  D+A  G D
Sbjct: 294 EGDVNILLATDVAARGID 311


>gi|15640680|ref|NP_230309.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121587852|ref|ZP_01677609.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 2740-80]
 gi|153818685|ref|ZP_01971352.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae NCTC 8457]
 gi|153822294|ref|ZP_01974961.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
 gi|227080841|ref|YP_002809392.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae M66-2]
 gi|229505718|ref|ZP_04395228.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae BX 330286]
 gi|229508708|ref|ZP_04398201.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
 gi|229519543|ref|ZP_04408986.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC9]
 gi|229608737|ref|YP_002879385.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MJ-1236]
 gi|254850991|ref|ZP_05240341.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MO10]
 gi|255743880|ref|ZP_05417836.1| ATP-dependent RNA helicase SrmB [Vibrio cholera CIRS 101]
 gi|262156099|ref|ZP_06029218.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae INDRE 91/1]
 gi|298500776|ref|ZP_07010579.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MAK 757]
 gi|9655098|gb|AAF93826.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547888|gb|EAX57972.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 2740-80]
 gi|126510765|gb|EAZ73359.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae NCTC 8457]
 gi|126520190|gb|EAZ77413.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
 gi|227008729|gb|ACP04941.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae M66-2]
 gi|229344232|gb|EEO09207.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC9]
 gi|229354232|gb|EEO19162.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
 gi|229357941|gb|EEO22858.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae BX 330286]
 gi|229371392|gb|ACQ61815.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MJ-1236]
 gi|254846696|gb|EET25110.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MO10]
 gi|255738511|gb|EET93900.1| ATP-dependent RNA helicase SrmB [Vibrio cholera CIRS 101]
 gi|262030135|gb|EEY48780.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae INDRE 91/1]
 gi|297540557|gb|EFH76615.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MAK 757]
          Length = 423

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/318 (12%), Positives = 77/318 (24%), Gaps = 50/318 (15%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           +      FS+P + Q E +                       SA  G GKT       L 
Sbjct: 16  EAIEEMGFSRPTQVQAEAIPQALDG------------RDVLASAPTGTGKTAAFVIPALQ 63

Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
            +   P        I+ +  +         AE ++ L+     + F +     +      
Sbjct: 64  YLLDFPRRKAGPARILILTPTRELAMQV--AEQAQALAKNTRLNIFTITGGVQYQEHADI 121

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
               Q +        +                       +  DEA    D+     +   
Sbjct: 122 LATTQDI--------VVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173

Query: 216 TELNPNRFWIMTSNTRRLN------------GWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
           +     R   +  +                    +     P  + K+        + +  
Sbjct: 174 STECRWRKQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPH 233

Query: 264 --GFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AID 312
                + I++     S V     E L     +     IP  +I  E    R         
Sbjct: 234 KVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFR 293

Query: 313 DLYAPLIMGCDIAGEGGD 330
           +    +++  D+A  G D
Sbjct: 294 EGDVNILLATDVAARGID 311


>gi|225155673|ref|ZP_03724162.1| hypothetical protein ObacDRAFT_9284 [Opitutaceae bacterium TAV2]
 gi|224803646|gb|EEG21880.1| hypothetical protein ObacDRAFT_9284 [Opitutaceae bacterium TAV2]
          Length = 575

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 58/246 (23%), Gaps = 23/246 (9%)

Query: 31  FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
           FV+       +GK L     P+  Q     A                 K      R +G 
Sbjct: 21  FVLFAVLKDKEGKILPKRK-PNILQKRMFAAYRKCMAEGKP------CKILGLKPRQVGL 73

Query: 91  TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
           +T+ A +    +    G+S   +A+              +    L     FE     + P
Sbjct: 74  STIVAAITYHHMMNHGGLSGALMADKTGTSDKVF-----EIFRTLAEHDKFEWGYGPM-P 127

Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP----DI 206
                  L   + + S           +E   +               E +  P      
Sbjct: 128 KFGEPGNLADEIVLPSGSMY------RKETAGSARAGAGGTIQVANATEVAHFPVIKGKD 181

Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFH 266
                   + +  P    ++ +      G FY+++      + R              F 
Sbjct: 182 PALGFFNSWYDEGPMSIGMLDTTPNGPTGIFYEMWQNKKNGYIRIFAAWFEFPEHARPFA 241

Query: 267 EGIISR 272
                 
Sbjct: 242 SAAERE 247


>gi|157123114|ref|XP_001660014.1| hypothetical protein AaeL_AAEL009397 [Aedes aegypti]
 gi|108874507|gb|EAT38732.1| conserved hypothetical protein [Aedes aegypti]
          Length = 646

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/299 (11%), Positives = 74/299 (24%), Gaps = 37/299 (12%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS---------------AGRGIGKTTLNAW 96
              Q E M+ +      ++  S       A+                   G GK++    
Sbjct: 139 DSAQRETMDEITSFQWIDIGISTNEEQMVAVRNIVNRTSFPAPYVLFGPPGTGKSSTLVE 198

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
           ++  +    P  +++ +A S            S+ L+++P +H F   S S   +    +
Sbjct: 199 VIGQIYKLHPEANMLVVAPSNFAANEIT----SRILNVVPEKHVFRYFSRSSIRTVNDID 254

Query: 157 LLEQSMGIDSKHYT------------ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                +   +                I   T               H   V  DE     
Sbjct: 255 ENILQISNMADKKYDLPYYQDIYLARIVVTTLVTAGRLVQANIRAKHFRYVIIDECGSAK 314

Query: 205 DIINKSILGFFTELNPNRF-WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
           +I +   +G            I+ +   +  G       +   +     +     E I  
Sbjct: 315 EISSLVPIGGLATCGDEIHASIVLAGDPKQLGPVIQHNYLKQTNHNVSLL-----ERIMK 369

Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGC 322
                +       ++    ++   F    +    P+        R           +G 
Sbjct: 370 LDLYEMNPTTKEYNNRYITQLRDNFRSHSMLLNFPNKTFYAGQLRAKASPELTNWALGW 428


>gi|12719430|ref|NP_075501.1| terminase large subunit [Staphylococcus phage phiSLT]
 gi|12697860|dbj|BAB21732.1| terminase large subunit [Staphylococcus phage phiSLT]
          Length = 563

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 48/348 (13%), Positives = 90/348 (25%), Gaps = 60/348 (17%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
             WQ   + ++    H           +  I  GR  GKTT  + +  + +S     G  
Sbjct: 81  QPWQHFIIGSLFGWVHK--ETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAE 138

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I  +AN   Q +  L+ E    +   P                   +L E    +  + +
Sbjct: 139 IHLLANVMKQAR-ILFDESKAMIKASP-------------------KLRENFRPLRDEIH 178

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTS 228
                +    +          +      DE     D  +   I              +T+
Sbjct: 179 YDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITT 238

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRT----------------------VEG----ID 262
              +L+G   D+     +   +   D RT                             ID
Sbjct: 239 AGYQLDGPLVDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSID 298

Query: 263 SGFHEGIISRYGLDSDV---ARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPL 318
               +    +             +    F   +  +FI +  +++        +    P 
Sbjct: 299 LDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYPTLQKNNEIISLDELEGRPC 358

Query: 319 IMGCDIAGEGGDKTV----VVFRRGNIIEHIFDWSAKLIQETNQEGCP 362
            +G D++    D T          G +      W  K   E + E  P
Sbjct: 359 TIGYDLSET-EDFTAACATFALDNGKVAVLTHSWIPKHKVEYSNEKIP 405


>gi|300871056|ref|YP_003785928.1| phage terminase large subunit [Brachyspira pilosicoli 95/1000]
 gi|300688756|gb|ADK31427.1| phage terminase, large subunit [Brachyspira pilosicoli 95/1000]
          Length = 453

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/180 (11%), Positives = 53/180 (29%), Gaps = 20/180 (11%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAIS-AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
            ++++          T  +  I+  GRG GK+   A +++          I+C    +  
Sbjct: 2   NININILKPFEKWINTEKRLKIAFGGRGGGKSESIARILIAKSFEI-NGVILCAREIQKS 60

Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
           +  + +  +   +  L    +F ++   +      ++                     E 
Sbjct: 61  ISYSTYPLLISIIKELNLNEFFVVKRNEIINKITNSK--------------FIFLGIREC 106

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
             +     +  +    F +EA        + +       + +  W+   N R    + Y 
Sbjct: 107 SIEEIKSIY--NVRICFIEEAQTLTQRSYEILEPSIR-ADKSEIWLAF-NPRFETDFIYR 162


>gi|290957801|ref|YP_003488983.1| nucleotide modification protein [Streptomyces scabiei 87.22]
 gi|260647327|emb|CBG70432.1| putative nucleotide modification protein [Streptomyces scabiei
           87.22]
          Length = 535

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 60/233 (25%), Gaps = 25/233 (10%)

Query: 11  LEQE----LHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFS--QPHRW----QLEFME 60
            EQE    L  +   A+       F        +   P        P       Q +   
Sbjct: 84  DEQEPLDYLQSLKWTADERRELLEFFGFTID-RVPSLPPAFKQEAGPEYGLFPHQRQAAA 142

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            V    +           +  +    G+GKT     ++   +       ++ +A+ +  L
Sbjct: 143 RVKELLYDGS-------RRTVLHLPTGVGKTRTGMSLICDHLRQHEPTVVVWLAHGQELL 195

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           +     E  +  + +  R    +  L +  +            +            S+ +
Sbjct: 196 EQAAV-EFERAWTKVGDRP---VPVLRVWGNASADLADMTDGLVVLGLEKAVSAAKSDPQ 251

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233
               +   +        DEA        + ++   T  +      +T+   R 
Sbjct: 252 FLATLAARS---TLTVFDEAHQIIAPTFQRVVDELTIRHDASLLGLTATPGRT 301


>gi|50289833|ref|XP_447348.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526658|emb|CAG60285.1| unnamed protein product [Candida glabrata]
          Length = 1512

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 2/117 (1%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKTT+ A ++  L+      S++  + + + + N +    +    M       ++ S 
Sbjct: 1067 GTGKTTVIAEIIHILVKNN--KSVLLTSYTHSAVDNIMLKLKNYNTKMCRLGSRSKIHSE 1124

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
             +     Y+ +      ++         T      DT +         V  DEAS  
Sbjct: 1125 IIPYIPDYSTIKTLDDYVEFIDNIPVVATTCLGIRDTMLSMRTKDFDYVIIDEASQI 1181


>gi|123402170|ref|XP_001302001.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
 gi|121883246|gb|EAX89071.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
          Length = 790

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 39/160 (24%), Gaps = 16/160 (10%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
           +   +    G GKT + A +++      P   II  A +         A V + +     
Sbjct: 71  YNTLVCLPTGSGKTFIAAVVIMNFYRWYPNSIIIFCATTR--------ALVEQQIDAC-- 120

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT--HGMAV 195
                  ++    +         ++  D            +   +              +
Sbjct: 121 ---NMFTTIPDSDTIALLGTTHSNIRKDLWKTYRVVYATPQTVQNDIKKGRLDPCRISLI 177

Query: 196 FNDEASGTPDII-NKSILGFFTELNPNRFWIMTSNTRRLN 234
             DEA           I     E N     I  S T   +
Sbjct: 178 IFDEAHHARHRHAYSMITRMVAERNSQFRIIGLSATPGKD 217


>gi|26990586|ref|NP_746011.1| phage terminase, large subunit, putative [Pseudomonas putida
           KT2440]
 gi|24985568|gb|AAN69475.1|AE016582_13 phage terminase, large subunit, putative [Pseudomonas putida
           KT2440]
          Length = 602

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/311 (11%), Positives = 83/311 (26%), Gaps = 60/311 (19%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTRPGMS-- 109
            WQ   + ++        ++     F+   + +G+G GK+ L A + L  +         
Sbjct: 88  PWQKFIVGSIF----GWKSSDGYRRFRVVYVESGKGSGKSPLAAGVGLTGLIADNEARAE 143

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I   A  + Q    L+ +    +   P     E+    +             +       
Sbjct: 144 IYAAATKKDQAM-ILFRDAVAMVQQSP-----ELTKRLVCSGTGQNIWNLAYLK------ 191

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
             +   +     D               DE       +   ++   T+        M +N
Sbjct: 192 --SGSFFRPISSDDGQS--GPRPHMALIDEVHEHKTNMVVEMMRAGTKSRKQALIFMITN 247

Query: 230 T-RRLNGWFYDIFNIP---------------------------LEDWKRYQIDTR----T 257
           +     G  ++                                 ++   ++ +       
Sbjct: 248 SGSNKRGPCWEYHEYGSRVASGALTDDGFFAYICSLDEGDDPIQDESCWFKSNPSLQDAD 307

Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEIL--GQFPQQEVNNFIPHNYIEEAMSREA-IDDL 314
           + G+     E +    G+ S  A +  L   ++     + +I  +   +A  R       
Sbjct: 308 LPGMKY-LREQVTEARGMPSKEAMVRRLNFCEW-TGAESPWISWDVWSQAEERVPMSLLR 365

Query: 315 YAPLIMGCDIA 325
             P + G D++
Sbjct: 366 NRPSVGGLDLS 376


>gi|291537488|emb|CBL10600.1| Predicted ATPase related to phosphate starvation-inducible protein
           PhoH [Roseburia intestinalis M50/1]
          Length = 455

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 51/195 (26%), Gaps = 7/195 (3%)

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM---SIICIANSETQLK 121
                +     T     I    G  KT     + +  +   P      II    +  Q  
Sbjct: 243 FMQEALMTDADTAPLVIIKGMAGTAKTFYALAVGMEKVYNNPSKEYRRIIVCRPN-AQFD 301

Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
           + +          +       + +L         E  E    +  K   +  R   +   
Sbjct: 302 DDIGFLPGDEKEKIAPLMRPVIDNLEQILDSDEKERYEDEAELSDKITEVFERGIIQTEA 361

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
             F+   +     +  DEA          + G  T        I+  +  +++  F D  
Sbjct: 362 LNFIRGRSIAKTYLIIDEAQNMTPNQ---VKGIITRAGKGTKIILLGDPNQIDKPFLDER 418

Query: 242 NIPLEDWKRYQIDTR 256
              L    +Y +D+ 
Sbjct: 419 TNGLSYAAKYMMDSE 433


>gi|86356736|ref|YP_468628.1| putative terminase large subunit protein [Rhizobium etli CFN 42]
 gi|86280838|gb|ABC89901.1| putative terminase large subunit protein [Rhizobium etli CFN 42]
          Length = 523

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/267 (11%), Positives = 66/267 (24%), Gaps = 29/267 (10%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
            +   R +G TT     ML        +    IA++   ++     ++      LP    
Sbjct: 55  VLLKARQLGLTTFIQIFMLDACVFNRDIRAGTIAHTLGDVQTIFRDKIKYPYDNLPEG-- 112

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
                  +  +       +  + + +        +       T    H +    +     
Sbjct: 113 -------IRNAVPVVRTNQSELLLANNSSIRVGTSLR---SGTLQYLHISEYGKL----C 158

Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL-----------EDWK 249
           +  PD   +   G    +   +   + S      G FY +                 D+K
Sbjct: 159 AKYPDKAREVRTGALNTVQAGQLVFVESTAEGQEGHFYSLCEDAQVKQRQALALTELDFK 218

Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA-MSR 308
            +                 IIS   +       E      + +   ++    ++   M R
Sbjct: 219 FHFFPWWKEPQYSIAPEGVIISDAFVKYFRELAEQGIALTEGQKAWYVKKAEVQLGDMKR 278

Query: 309 EAIDDLYAPLIMGCDIAGEGGDKTVVV 335
           E             + A    D+  + 
Sbjct: 279 EYPSTPAEAFEASVEGAYY-ADQMAIA 304


>gi|332283234|ref|YP_004418919.1| terminase [Pusillimonas sp. T7-7]
 gi|330430962|gb|AEC22295.1| terminase [Pusillimonas sp. T7-7]
          Length = 506

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 47/328 (14%), Positives = 86/328 (26%), Gaps = 64/328 (19%)

Query: 44  PLEHFSQPHR---WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
             EH  QP +   +Q +F++AV  + H             +I+  R  GK+ L A ++L 
Sbjct: 23  EGEHVGQPIKLAPFQKKFIKAVYDNKHGTRRAY------LSIA--RKNGKSALVAGILLA 74

Query: 101 LISTRP---GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
            +          I+  A S  Q    ++   +K + + P        S  +        L
Sbjct: 75  HLVGPEAQLNSQIVSGAQSRDQAA-LVFNLAAKMVQLSPE------LSGIVRIVPSGKRL 127

Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFF 215
           +   + ++ +       T            H    +    DE      P       +   
Sbjct: 128 IGLPLNVEYRALAADGTTA-----------HGLSPILAILDETGQVRGPQNDFVDAITTA 176

Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIF---NIPLEDWKRYQIDTRTVEGID---------- 262
              +     ++ S     +      +       +D +          G D          
Sbjct: 177 QGAHKAPLLLVISTQAANDADLLSQWIDDAEKSKDPRIVSHVYAAKPGADVLDKTAWKAA 236

Query: 263 ----------SGFHEGIISRYGLDSDVARIEILGQFPQQEV-NNFIPHNYIEEAMSREAI 311
                         E       + S       L    +      FI  N  +    R   
Sbjct: 237 NPALGIFRSLEDLEEQARQAARMPSAENTFRNLILNQRVSTVTPFISKNVWDANSGRVV- 295

Query: 312 DDLYAPLIM-GCDI-AGEGGDKTVVVFR 337
            D     +  G D+ A    D T +V  
Sbjct: 296 -DFGDTKVWAGLDLSART--DLTALVII 320


>gi|253315476|ref|ZP_04838689.1| terminase large subunit [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
          Length = 563

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 91/348 (26%), Gaps = 60/348 (17%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
             WQ   + ++    H           +  I  GR  GKTT  + +  + +S     G  
Sbjct: 81  QPWQHFIIGSLFGWVHK--ETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAE 138

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I  +AN   Q +  L+ E    +   P                   +L E    +  + +
Sbjct: 139 IHLLANVMKQAR-ILFDESKAMIKASP-------------------KLRENFRPLRDEIH 178

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTS 228
                +    +          +      DE     D  +   I              +T+
Sbjct: 179 YDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITT 238

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRT----------------------VEG----ID 262
              +L+G   ++     +   R   D RT                             ID
Sbjct: 239 AGYQLDGPLVNMVEAGRDTLDRIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSID 298

Query: 263 SGFHEGIISRYGLDSDV---ARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPL 318
               +    +     D       +    F   +  +FI +  +++        +    P 
Sbjct: 299 LDEMKEEWEKAKRTPDERGDFITKRFNIFANNDEMSFIDYPTLQKNNDIISLDELEGRPC 358

Query: 319 IMGCDIAGEGGDKTVVV----FRRGNIIEHIFDWSAKLIQETNQEGCP 362
            +G D++    D T          G +      W  K   E + E  P
Sbjct: 359 TIGYDLSET-EDFTAACATFGLDNGKVAVLTHSWIPKHKVEYSNEKIP 405


>gi|254472100|ref|ZP_05085500.1| Type III restriction enzyme, res subunit family [Pseudovibrio sp.
           JE062]
 gi|211958383|gb|EEA93583.1| Type III restriction enzyme, res subunit family [Pseudovibrio sp.
           JE062]
          Length = 922

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/197 (13%), Positives = 54/197 (27%), Gaps = 27/197 (13%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q   +  +D H   +  +         + A  G GKT L   +M      R G   I
Sbjct: 13  REYQERVLAELDTHLDDDHLH---------VVAAPGSGKTVLGLEVM-----RRIGQPAI 58

Query: 112 CIANSETQLKNTLWA-----------EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
            +A +   ++N               E   W+S       F            ++     
Sbjct: 59  ILAPTI-TIRNQWIDRLTSMFLPDGVEKPSWISKDIRNPRFLTVITYQALHAAFSNQDID 117

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGP-HNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
               D +            +           +   +  DEA    +   K+++     L+
Sbjct: 118 EELQDVEDEADDKPQIKCSKSVDINALLAAQNIQVLVLDEAHHLRNEWWKALIKLKGTLS 177

Query: 220 PNRFWIMTSNTRRLNGW 236
             +   +T++      +
Sbjct: 178 KPKIVSLTASPPYDVDY 194


>gi|19114536|ref|NP_593624.1| ATP-dependent 3' to 5' DNA helicase (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|74698622|sp|Q9HE09|MFH2_SCHPO RecName: Full=Putative ATP-dependent RNA helicase mfh2; AltName:
           Full=FancM homolog protein 2
 gi|12038920|emb|CAC19734.1| ATP-dependent 3' to 5' DNA helicase (predicted)
           [Schizosaccharomyces pombe]
          Length = 783

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 63/224 (28%), Gaps = 35/224 (15%)

Query: 9   QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68
               Q + E+  + +   +        FP            Q   +Q EF E    H   
Sbjct: 78  SSQPQVITELENNIDIPKNIDAMQNWIFP---------QTQQYRNYQKEFCEQALFH--- 125

Query: 69  NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
                        ++   G+GKT + A +ML      P   II +A ++          +
Sbjct: 126 ----------NLLLALPTGLGKTFIAAVVMLNYFRWFPESKIIFLAPTK--------PLL 167

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
            +      +       + +   +G  +           + + +T +T   +  +      
Sbjct: 168 LQQRVACSNVAGMSPGATAE-LNGEVSPDRRLFEYNTKRVFFMTPQTLQNDLKE--HLLD 224

Query: 189 NTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNT 230
               + +  DEA          + +       +  R   +T+  
Sbjct: 225 AKSIICLIFDEAHRATGNHSYAQVMRAVLRSNSHFRVLGLTATP 268


>gi|253682970|ref|ZP_04863757.1| hypothetical protein CLG_B2294 [Clostridium phage D-1873]
 gi|253560896|gb|EES90358.1| hypothetical protein CLG_B2294 [Clostridium phage D-1873]
          Length = 611

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/361 (10%), Positives = 90/361 (24%), Gaps = 59/361 (16%)

Query: 9   QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68
           +  + + + ++  +        F+           P + + + + +Q   +         
Sbjct: 43  KFEDNKKNFIMWASFFRAYPDIFIDMV-------TPQDSYFKLYPYQRIMLR-------- 87

Query: 69  NVNNSNPTIFKCAISAG---RGIGKTTLNAWMMLWLISTRPGMSIICIAN-SETQLKNTL 124
                   +F+     G   RG  K+ +     L       G+     A+ S+ Q ++  
Sbjct: 88  -------LLFRYQYCFGTLTRGSAKSFVEVLACLLKDIMYAGLKNSITASGSKQQGRDIA 140

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC-RTYSEERPDT 183
             ++ +    LP      + +  +       + +E  M   S    + C       R + 
Sbjct: 141 NEKIDEIERFLP------VIAKEIKNKSVGKDYVEVEMYNKSWLGVVGCHNNSRGGRKNQ 194

Query: 184 FVGPHNTHGMAVFNDEA------------SGTPDII-NKSILGFFTELNPNRFWIMTSNT 230
                         +EA             G  D       L + T        I     
Sbjct: 195 GCIEEAFDVDVQTLNEAILPMFNVKRRTPRGIEDENEFDEQLWYVTTAGFYDTAICRKQV 254

Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTR---TVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
             L+             +  +            +     + I +           E    
Sbjct: 255 DMLHQMSKQSSYSGKNTYCVFGSSYELPLYHGLLKQSKVDAITNDSSYSQLSFDREYRSI 314

Query: 288 FPQQEVNNFIPHNYIEEAM-------SREAIDDLYAPLIMGCDIAGEGG---DKTVVVFR 337
           + +     F   + I             +  +      I+  D+A +GG   D ++    
Sbjct: 315 WIKFSDKAFFKLDDINNCRVIKHCELEADFKNHKDDFYIISYDVARQGGTANDASIATIF 374

Query: 338 R 338
           R
Sbjct: 375 R 375


>gi|229520951|ref|ZP_04410373.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TM 11079-80]
 gi|229342184|gb|EEO07180.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TM 11079-80]
          Length = 423

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/318 (12%), Positives = 77/318 (24%), Gaps = 50/318 (15%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           +      FS+P + Q E +                       SA  G GKT       L 
Sbjct: 16  EAIEEMGFSRPTQVQAEAIPQALDG------------RDVLASAPTGTGKTAAFVIPALQ 63

Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
            +   P        I+ +  +         AE ++ L+     + F +     +      
Sbjct: 64  YLLDFPRRKAGPARILILTPTRELAMQV--AEQAQALAKNTRLNIFTITGGVQYQEHADI 121

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
               Q +        +                       +  DEA    D+     +   
Sbjct: 122 LATTQDI--------VVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173

Query: 216 TELNPNRFWIMTSNTRRLN------------GWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
           +     R   +  +                    +     P  + K+        + +  
Sbjct: 174 STECRWRKQTLLFSATLEGRGVEGFTADLLKDPAHVDAESPRRERKKISQWYHRADDMPH 233

Query: 264 --GFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AID 312
                + I++     S V     E L     +     IP  +I  E    R         
Sbjct: 234 KVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFR 293

Query: 313 DLYAPLIMGCDIAGEGGD 330
           +    +++  D+A  G D
Sbjct: 294 EGDVNILLATDVAARGID 311


>gi|206603325|gb|EDZ39805.1| Putative helicase [Leptospirillum sp. Group II '5-way CG']
          Length = 1055

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 76/234 (32%), Gaps = 42/234 (17%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEA 61
              +    + + ++ ++L  +     F +             P +   +P+ +Q E ++ 
Sbjct: 284 STFVPYSSEKKADVQKILSRSRSRDDFSD-----------TIPFD--IRPYPFQEEVLDR 330

Query: 62  VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121
           ++              F+  + +  G GKT + A+        +P  + + +A+ +  L+
Sbjct: 331 LEA------EREVHGSFRNLVVSATGTGKTVIAAFDFRRFREQKPDATFLFVAHRQEILE 384

Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
            +L     ++  +L  R++ E+              +  S  +  +H   + ++      
Sbjct: 385 QSL----KQFRHILEDRNFGEL-------------WVAGSRPVHGQHVFASIQSLDRAAV 427

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
                        V  DE       +  +       L P     +T+   R +G
Sbjct: 428 GRISP---EQFDYVVIDE---IHHGMAPTYRRLLETLKPRILLGLTATPERSDG 475


>gi|172034833|ref|YP_001798610.1| hypothetical protein cce_5230 [Cyanothece sp. ATCC 51142]
 gi|171701597|gb|ACB54576.1| conserved hypothetical protein [Cyanothece sp. ATCC 51142]
          Length = 496

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/272 (11%), Positives = 64/272 (23%), Gaps = 43/272 (15%)

Query: 48  FSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107
            +   R Q    + +     ++        F+ +  AG   GK+ L A ++ WL   +  
Sbjct: 60  ATGLTRQQQTAYKEMINFIENSSEQY----FRLSGYAG--TGKSFLMAKVIEWL--KQED 111

Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
                 A +    KN                             G   E    +  +  +
Sbjct: 112 YKYSVAAPTNKAAKNLT---------------------QIARSQGIKIEATTVAKLLKLQ 150

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
                         ++           +  DE S       + +            ++  
Sbjct: 151 PTIDVDTGQQSFEFNSEKELELKDYDVIIIDEYSMLNKDNFRDLQQAVKGGESKFIFVGD 210

Query: 228 SN---TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
           S+     +             +     QI     E +     E I      +        
Sbjct: 211 SSQLPPVKEKEPIVANHPDIRKSANLTQIVRYDGEIV--KVAESIRRNPRWNHQTYP--- 265

Query: 285 LGQFPQQEVNNFIPH---NYIEEAMSREAIDD 313
              F        I     +++++A+S    +D
Sbjct: 266 ---FETVADGTIIKLNTEDWLQQALSHFEKED 294


>gi|325674311|ref|ZP_08154000.1| putative phage associated protein [Rhodococcus equi ATCC 33707]
 gi|325554991|gb|EGD24664.1| putative phage associated protein [Rhodococcus equi ATCC 33707]
          Length = 489

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/322 (12%), Positives = 78/322 (24%), Gaps = 40/322 (12%)

Query: 39  GIKGKPLEHFSQ--PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
           G K   L       P  WQ E + A+           +       +   R  GK+ +   
Sbjct: 9   GEKAVELARRIGAKPMPWQREALHALMTRNDDGRWTHSDA----CLICPRQNGKSLILTL 64

Query: 97  MMLWLISTRPGMSIICIANSETQLKNT---LWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
            +L+ +    G +II  A   T  +      WA +    S+L                  
Sbjct: 65  RILYGLFKL-GETIIFTAQRWTTAEEIYQRTWALIEPRKSLLARVKKTTCSQGRGVIEMK 123

Query: 154 YAELLEQSMGIDSKHYTITC-----------RTYSEERPDTFVGPHNTHGMAVFNDEASG 202
               +  +         +T             T  E                ++   A  
Sbjct: 124 NGNKVVFTTRSADAGRGLTKLDLVIYDEAYNLTDGEMSALGPAQLAADDPQTIYTSSAVN 183

Query: 203 TPDIINKSILGFFTELN----PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
             +  N  +L    E         ++        ++      +      +   Q      
Sbjct: 184 QDEHSNGLVLAALRERGLAGERELYFAEYMAPEEMDRADEATWQYANPSYGVIQ-----T 238

Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILGQFP--QQEVNNFIPHNYIEEAMS---REAIDD 313
                    G  ++ G  S    I   G +P  +   +       ++ A      +    
Sbjct: 239 PSKIRKLMRGFATQAGRKSFDVEILGRGDWPIEELLEDT---KPVVDMAGWSKLHDTAPA 295

Query: 314 LYAPLIMGCDIA--GEGGDKTV 333
                 +  D++   E  D+T 
Sbjct: 296 FTGSTCLAVDMSTERERSDRTC 317


>gi|167753387|ref|ZP_02425514.1| hypothetical protein ALIPUT_01661 [Alistipes putredinis DSM 17216]
 gi|167658012|gb|EDS02142.1| hypothetical protein ALIPUT_01661 [Alistipes putredinis DSM 17216]
          Length = 472

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/270 (10%), Positives = 66/270 (24%), Gaps = 27/270 (10%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G  K+      ++++    PG           +L+ +      K  +    +        
Sbjct: 61  GGAKSWTGCTWLVFMSLCYPGTKWFIGREELKRLRESTLITFFKVCTQYGIK-------- 112

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                 +     +  +   +                 +    +      + +E       
Sbjct: 113 --RDKDFKYNGQDHYIQFANNSRIDLLDLRYLPSDPLYERYGSVEYTGGWIEEGGEVNFG 170

Query: 207 INKSILGFFTEL-----NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR------YQIDT 255
              ++               R   ++ N ++   W +  F  P +               
Sbjct: 171 AYDTLKTRIGRHLNDKYGILRKLFISCNPKK--NWMHSTFYKPAKAGTLPGHQIYLAALV 228

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQF-PQQEVNNFIPHNYIEEAMSREAIDDL 314
           +    I+  + E + S    D       + G +      N    ++ I E    +     
Sbjct: 229 QDNPFIEKDYIEALKSTT--DKVKKERLLKGNWDYDDNPNALCSYDNIREIFYPKIHTRT 286

Query: 315 YAPLIMGCDIAGEGGDKTVVVFRRGNIIEH 344
               I   DIA  G D+  ++   G  I  
Sbjct: 287 GIKYITA-DIARFGSDRARILVWDGWAIIE 315


>gi|154504557|ref|ZP_02041295.1| hypothetical protein RUMGNA_02062 [Ruminococcus gnavus ATCC 29149]
 gi|260590084|ref|ZP_05855997.1| putative phage terminase, large subunit [Blautia hansenii DSM
           20583]
 gi|153795039|gb|EDN77459.1| hypothetical protein RUMGNA_02062 [Ruminococcus gnavus ATCC 29149]
 gi|260539596|gb|EEX20165.1| putative phage terminase, large subunit [Blautia hansenii DSM
           20583]
          Length = 551

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 47/194 (24%), Gaps = 30/194 (15%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP--GMS 109
             WQ   +  +     +        IF   I  GR  GK+   + ++ ++    P  G  
Sbjct: 73  ELWQKAIVSVIFGIQDAEKIRIFREIF---IVIGRKNGKSLFASAIIAYMAYLEPEYGQE 129

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I C+A    Q           +  M+         +       + AE          K  
Sbjct: 130 IYCLAPKLDQAALVY----DGFYQMVQAEDELAELAKKRRSDIYIAESNTV-----IKPI 180

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI----INKSILGFFTELNPNRFWI 225
               +      P             V  DE +           + +             +
Sbjct: 181 AFNAKKSDGFNPQ-----------LVVCDEMAAWSGDAGLKQYEVMKSAL-GARTQPMIL 228

Query: 226 MTSNTRRLNGWFYD 239
             S    +N   YD
Sbjct: 229 SISTAGYINDSIYD 242


>gi|126662825|ref|ZP_01733824.1| hypothetical protein FBBAL38_05700 [Flavobacteria bacterium BAL38]
 gi|126626204|gb|EAZ96893.1| hypothetical protein FBBAL38_05700 [Flavobacteria bacterium BAL38]
          Length = 869

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 54/184 (29%), Gaps = 27/184 (14%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q +F+   + H H N  +         + A  G GKT L   +M      R     +
Sbjct: 13  RTYQEKFLSQFESHIHDNHLH---------VIAPPGSGKTILGLEIM-----RRMNKKTL 58

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            ++ +   ++N       +W   L         + S   +  +     + +   +     
Sbjct: 59  ILSPTL-TIRN-------QWNERLQSF----FSNNSNFENYSFDINEPKDVIFSTYQSLH 106

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
           +     + + D F          +  DEA    +   K +     E        +T+   
Sbjct: 107 SFFKKCKSKEDYFEYFEKNKIEVLILDEAHHLKNEWWKCLYE-LKEHQKQTVVALTATPP 165

Query: 232 RLNG 235
             + 
Sbjct: 166 YDSD 169


>gi|73748049|ref|YP_307288.1| helicase [Dehalococcoides sp. CBDB1]
 gi|73659765|emb|CAI82372.1| putative helicase (Snf2 family) [Dehalococcoides sp. CBDB1]
          Length = 1033

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 70/233 (30%), Gaps = 14/233 (6%)

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG-MSIICIANSETQLKNTLWAEVSKWLS 133
               +  I+ G G+GKT + A ++L  +  R    S++ I      ++     E+ ++  
Sbjct: 121 SDRPRLLIADGVGVGKT-IEAGLILQELQARRDIQSVLIICPRPLVMERKWQIEMRRFGE 179

Query: 134 MLPHR-------HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
              H           EM    + P  +   ++  S+  +   +        + R      
Sbjct: 180 HFTHLEGSTLRYCINEMDLEGIWPEQYKKSIISYSLFDEMLLFGPNGGNNRKRRKSLLTL 239

Query: 187 PHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRR-LNGWFYDIFNI 243
                   V  DEA      +      + +F + N      +T+   +  +   + + N+
Sbjct: 240 DPPPRFDLVIVDEAHHIRNTETYAHKAVRYFCD-NAEAVLFLTATPIQLGSNDLFVLLNV 298

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
              D       +       + F    ++      +    E L    +     +
Sbjct: 299 LRPD-LIIDQKSFEHMAEPNPFINRAVAVTRSQQNEWEHEALVAIEEAASTAW 350


>gi|254491400|ref|ZP_05104579.1| DbpA RNA binding domain family [Methylophaga thiooxidans DMS010]
 gi|224462878|gb|EEF79148.1| DbpA RNA binding domain family [Methylophaga thiooxydans DMS010]
          Length = 460

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/313 (12%), Positives = 78/313 (24%), Gaps = 41/313 (13%)

Query: 53  RWQLEFMEAV-DVHCHSNVNNSNPTIFK---CAISAGRGIGKTTLNAWMMLWLIS-TRPG 107
           + QL+ ++++      +    S P I K       A  G GKT      +L  ++    G
Sbjct: 13  KAQLDALDSLGYESMTAIQAQSLPEILKGNDLIAQAKTGSGKTAAFGIGLLQKLNPRFFG 72

Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE-MQSLSLHPSGWYAELLEQSMGIDS 166
              + +  +    +     E+ K    +P+           + P     E          
Sbjct: 73  AQALVLCPTRELAEQV-GKEIRKLARFMPNIKLVMLCGGKPIGPQIGSLEH--------- 122

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
             + +       +               +  DEA    D+     +       P     +
Sbjct: 123 GAHIVVGTPGRVQDHLRKNTLKLDGLTTLVLDEADRMLDMGFADAMQAIIGQTPKNRQTL 182

Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL- 285
             +    +   +    I               E I   F+E                   
Sbjct: 183 LFSATYPDTIQHMSRQIQRNPVTVTVEAEHNKEVIQQVFYEVSKHDRNTALLSLFAHYQP 242

Query: 286 ----------------GQFP--QQEVNNFIPHNYIEEAMSREAIDDLYA----PLIMGCD 323
                             F   +Q     I  +  +    R+ +   +A    P+++  D
Sbjct: 243 ETCVVFCHTKKQCDDVADFLNNEQIDALAIHGDLDQR--DRDQVLVRFANNSCPVLVATD 300

Query: 324 IAGEGGDKTVVVF 336
           +A  G D   +  
Sbjct: 301 VAARGLDIKALQM 313


>gi|90962732|ref|YP_536647.1| Type III restriction-modification system restriction subunit
           [Lactobacillus salivarius UCC118]
 gi|90821926|gb|ABE00564.1| Type III restriction-modification system restriction subunit
           [Lactobacillus salivarius UCC118]
 gi|300215361|gb|ADJ79774.1| Type III restriction-modification system restriction subunit
           [Lactobacillus salivarius CECT 5713]
          Length = 875

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 59/196 (30%), Gaps = 18/196 (9%)

Query: 13  QELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQ-PHRWQLEFMEAVDVHCHSNVN 71
           +++ +    +        +         +    ++       +Q E + A+  +  +   
Sbjct: 16  KKIEDFRQASLIEDDPAYYFKI------EDYIKDNLKHNLRPYQAEALYAL-NYTQTREE 68

Query: 72  NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV--- 128
             N  +F  A     G GKT   A  +L+L +T    + I +AN+   +  T    +   
Sbjct: 69  PHNQVLFNMA----TGSGKTDTMAGAILYLYNTHKYRNFIFVANTNAVVSKTKENFLNEN 124

Query: 129 --SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
                           ++  S+     Y E     + + +            E   T+  
Sbjct: 125 SPKYLFKSPITIDGRRIEIRSVDRFPSYQEPDIIYLKLTTIQSLANELGSIRENGLTYEE 184

Query: 187 PHNTHGMAVFNDEASG 202
               + M +  DEA  
Sbjct: 185 LE-KNKMVILADEAHH 199


>gi|256826731|ref|YP_003150690.1| phage terminase, large subunit, PBSX family [Cryptobacterium curtum
           DSM 15641]
 gi|256582874|gb|ACU94008.1| phage terminase, large subunit, PBSX family [Cryptobacterium curtum
           DSM 15641]
          Length = 426

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 74/256 (28%), Gaps = 23/256 (8%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
            +  GRG  K++  + +++ L++T P ++ +        L++T++ +    +  L     
Sbjct: 29  WLEGGRGSTKSSFISLVIVLLVATFPWVNAVVFRRQANTLRDTVYGQFLWAIGALGLDGC 88

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
           F      L              G+D                  +             DE 
Sbjct: 89  FYTSKSPLEIVYLRTGQKIIFRGLDDPKKRKGAVFPVGYCAVQW---------FEELDEF 139

Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT--- 257
           +G  DI   S L  +       +   + N  R    + +   + ++  +   +D  T   
Sbjct: 140 NGWDDI--SSTLRTYRRGGSRFWTFYSYNPPRSLWSWVNKKALEMQRKRGCVVDHSTYLD 197

Query: 258 ------VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311
                  + +   F E             R E LG+       +      + +    +  
Sbjct: 198 VIDGGHSDWLGEKFIEDADYEKEEHPTGYRWEFLGE-ITGTGGSVF--ENVVQVSLSDKE 254

Query: 312 DDLYAPLIMGCDIAGE 327
            + +  L  G D    
Sbjct: 255 VESFDNLRCGVDWGWF 270


>gi|281358561|ref|ZP_06245040.1| conserved hypothetical protein [Victivallis vadensis ATCC BAA-548]
 gi|281314909|gb|EFA98943.1| conserved hypothetical protein [Victivallis vadensis ATCC BAA-548]
          Length = 488

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 90/302 (29%), Gaps = 50/302 (16%)

Query: 87  GIGKTTLNAWMMLWLISTRPG-------MSIICIANSETQLKNTLWAEVSKWL--SMLPH 137
           G GK+    + +L+ +  +            + I N+  +LK T     S+W+     P 
Sbjct: 32  GSGKSVACIFELLFRMREQAPNREGVRRSRWVIIRNTYPELKETTIKTFSEWVPSECCPI 91

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
           R        +  P              D   Y       + +RPD      +      + 
Sbjct: 92  RSEAPYSGTAWGPMD------------DGTTYEAEFLFLALDRPDDVKKLLSLECTGAWI 139

Query: 198 DEASGTPDIINKSILGFFTE----LNPNRFW---IMTSNTRRLNGWFYDIFNIPLEDWKR 250
           +EA   P  I   ILG         +    W   IM +N    + W+Y +  +   +   
Sbjct: 140 NEAREVPLTIVNGILGRTGRFPPKADAPTTWAGLIMDTNPPDTDHWYYKMAELDKPEGYS 199

Query: 251 YQIDT---------RTVEGIDSGFHEG---------IISRYGLDSDVARIEILGQFPQQE 292
           +                   ++   E            ++ G+D +  R+ ++ Q+    
Sbjct: 200 FYRQPGGILEVAEGVYAPNPEAENIENLPLGYDYYLRQAKPGVDPNYIRVMLMAQYGTLS 259

Query: 293 VNNFIPHNYIEEAMS--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
            +  +   + E      R        PL++G D         V   + G  +  + +  +
Sbjct: 260 ADRPVYTTFKENIHVAARPLEIHRNLPLLLGFDFGLTP--ACVFCQQLGGQLRVLRERFS 317

Query: 351 KL 352
             
Sbjct: 318 DD 319


>gi|212545250|ref|XP_002152779.1| DEAD/DEAH box helicase, putative [Penicillium marneffei ATCC 18224]
 gi|210065748|gb|EEA19842.1| DEAD/DEAH box helicase, putative [Penicillium marneffei ATCC 18224]
          Length = 1850

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 61/216 (28%), Gaps = 20/216 (9%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P RWQ + ++ +                   I A    GKT ++ + M  ++       +
Sbjct: 784 PDRWQRDVLDQI------------DQKKSTFIVAPTSAGKTFISFYAMKQILKEDDDGVL 831

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + +A ++  +       ++++    P  +       ++H              + +  + 
Sbjct: 832 VYVAPTKALVNQIAAEVMARFSKSYP-ENATAKSVWAIHTRDHRINNPLTCQILITVPHI 890

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM---T 227
           +     +    +T+          +  DE        +  +      L P     +    
Sbjct: 891 LQIMLLAPSNANTWTPRLKR----IIFDEIHCIGQAEDGIVWEQLLLLAPCPIIALSATV 946

Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
            N    N W     +    D K  Q + R  +    
Sbjct: 947 GNPNEFNSWLQRAQDTNGHDLKMIQYNHRYSDLRKY 982


>gi|154492413|ref|ZP_02032039.1| hypothetical protein PARMER_02047 [Parabacteroides merdae ATCC
           43184]
 gi|154087638|gb|EDN86683.1| hypothetical protein PARMER_02047 [Parabacteroides merdae ATCC
           43184]
          Length = 422

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/287 (10%), Positives = 68/287 (23%), Gaps = 43/287 (14%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTRPG-----MSIICIANSETQLKNTLWAEVSK 130
             F   I+ GRG GK+   +  +  L             I+    +      ++  E+ +
Sbjct: 16  EKFIILITGGRGSGKSFNASTFIERLTFEMTPVEKIVHQILYTRYTMVSAGMSIIPEMME 75

Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
            + +                     +    +    S+      +T S  +          
Sbjct: 76  KIEL-----------DGTTKYFKTTKTDIVNNMTKSRIMFRGIKTSSGNQTAKLKSIQG- 123

Query: 191 HGMAVFND-EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE--- 246
                  D     T +     I+    +       I+  N    N + Y  +        
Sbjct: 124 -ITTFVCDEAEEWTSEEEFDKIMLSIRKKGIQNRIIIIMNPCDSNHFIYKKYIEKTHKLA 182

Query: 247 DWKRYQIDTRTVEGI--------------DSGFHEGIISRYGLDSDVARIEILGQFPQQE 292
           +    Q+   T   +                 F + +      + +     ++G++    
Sbjct: 183 EIDGVQVQISTHPNVLHIHTTYFDNLENLSPEFLKEVEDMKANNPEKYAHVVIGRWADVA 242

Query: 293 VNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRG 339
                    I      +        + +G D      D +    R G
Sbjct: 243 AGAVFKKWGI-----VDEFPAWAKKVAIGQDFGYT-HDPSA-SIRCG 282


>gi|83589362|ref|YP_429371.1| CRISPR-associated helicase Cas3 family protein protein [Moorella
           thermoacetica ATCC 39073]
 gi|83572276|gb|ABC18828.1| CRISPR-associated helicase, Cas3 family [Moorella thermoacetica
           ATCC 39073]
          Length = 724

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/246 (10%), Positives = 54/246 (21%), Gaps = 22/246 (8%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
           +    +  HC        P  F   +    G GKT       L          II     
Sbjct: 219 QIRREIYEHCCR-AAELTPGFFSLTV--PTGGGKTRSGMAFALLHALRYQKERIIVAIPY 275

Query: 117 ETQL-------KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
            + +       ++                                A     +  I +   
Sbjct: 276 TSIIEQTADVYRDIFGNANVLEHHSAVAPPLDPENPTPEELWARLASENWDATLIVTTTV 335

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWI 225
            +    +S+ R  +    HN     +  DE    P    + I   +              
Sbjct: 336 QLFESLFSD-RSSSCRKLHNIANSVIILDEVQTLPVHLLEPILDVLQQLVHFYGVTVILC 394

Query: 226 MTSNTRRLNGWFY-------DIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278
             +        F+       +I   P + +   +     V   +  +    ++     S 
Sbjct: 395 SATQPALETSPFFRGLQGVREIIPDPQKYFALLKRVGYQVPAGNEKWSWEQVAGVIRQSR 454

Query: 279 VARIEI 284
            A   +
Sbjct: 455 QAMAVV 460


>gi|212223477|ref|YP_002306713.1| reverse gyrase [Thermococcus onnurineus NA1]
 gi|212008434|gb|ACJ15816.1| reverse gyrase (rgy) [Thermococcus onnurineus NA1]
          Length = 1221

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 63/250 (25%), Gaps = 27/250 (10%)

Query: 45  LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            E+ +    W                          +I A  G+GK+T  A+M LW  + 
Sbjct: 77  FENATGFTFW----------SAQRTWVKRLLKGRSFSIIAPTGMGKSTFGAFMALWHAT- 125

Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
             G     +  +   +  T+     K +  +  +   ++     H +    E  E    I
Sbjct: 126 -KGKKSYIVVPTTPLVIQTV-----KKIQAIAEKSGVQINLAYYHGNLRKKEKEEMLAKI 179

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
           ++  Y I   +      +            +F D                    N +R  
Sbjct: 180 ENDDYQILVTSAQWLARNFDEKLKGRRFDFIFVD----------DVDAFLKASKNIDRSL 229

Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
           ++   T  +    ++I  +     K         +      +  I        +      
Sbjct: 230 LLLGFTEEVINKAWEIIRLKKSMAKYINGRAEDRDERLKELNREIEKLQREIEEFKEKNG 289

Query: 285 LGQFPQQEVN 294
           +G        
Sbjct: 290 VGIMIIASAT 299


>gi|116253678|ref|YP_769516.1| phage terminase large subunit [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115258326|emb|CAK09428.1| putative phage terminase large subunit [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 523

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/267 (11%), Positives = 63/267 (23%), Gaps = 29/267 (10%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
            +   R +G TT     ML        +    IA++    +     +V      LP    
Sbjct: 55  VLLKARQLGLTTFIQIFMLDACVFNRDIRAGTIAHTLGDAQTIFRDKVKYPYDNLPEG-- 112

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
                  +  +       +  + + +        +       T    H +    +     
Sbjct: 113 -------IREAVPIVRDNQTELLLGNNSSIRVGTSLR---SGTLQYLHISEYGKL----C 158

Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL-----------EDWK 249
           +  PD   +   G    +   +   + S      G FY +                 D+K
Sbjct: 159 AKYPDKAREVRTGALNTVQAGQLVFVESTAEGQEGHFYTLCEDAQVKQRQSSKLTELDFK 218

Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA-MSR 308
            +                 II+           +   +    +   ++     +   M R
Sbjct: 219 FHFFPWWKEPQYSIAPEGVIITEAFAKYFRTLADQGIELTDGQKAWYVKKAETQLGDMKR 278

Query: 309 EAIDDLYAPLIMGCDIAGEGGDKTVVV 335
           E             + A    D+  V 
Sbjct: 279 EYPSSPAEAFEASVEGAYY-SDQMAVA 304


>gi|292670208|ref|ZP_06603634.1| CRISPR-associated helicase cas3 [Selenomonas noxia ATCC 43541]
 gi|292648160|gb|EFF66132.1| CRISPR-associated helicase cas3 [Selenomonas noxia ATCC 43541]
          Length = 803

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 56/225 (24%), Gaps = 26/225 (11%)

Query: 3   RLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME-- 60
           RL S + +LE+ L +    AE    F +         ++ K       P     +     
Sbjct: 204 RLDSAEFELEKPLTDEWDTAEIWADFSD--------KLEQKLTGFSIPPEPKAEKIARLR 255

Query: 61  -AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET- 118
             +   C  + + S P IF+  +    G GKT  +    L          I+ +    + 
Sbjct: 256 QKISDDCLESGDES-PGIFRLCV--PTGGGKTLASMRFALRHAQKYNKKRIVVVIPYTSI 312

Query: 119 ------QLKNTLW--AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
                 ++++       + +  S +      E                   +        
Sbjct: 313 IDQNVKEIRDIFHMDEAILEHHSNVITEDDGEDTESMDFRRILTERWDVPVIFT---TQV 369

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
               T       +    H      +  DE    P           
Sbjct: 370 QFLNTVFAGGNSSLRRLHALEDSIIIFDEIQTLPIRCTYLFNAAM 414


>gi|229585247|ref|YP_002843749.1| hypothetical protein M1627_1829 [Sulfolobus islandicus M.16.27]
 gi|228020297|gb|ACP55704.1| protein of unknown function DUF699 ATPase putative [Sulfolobus
           islandicus M.16.27]
          Length = 742

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 38/137 (27%), Gaps = 21/137 (15%)

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
           P      ++A RG GK+      + +L++     +I+  + +    +   +  V K L  
Sbjct: 229 PGKRVLVVTAARGRGKSASIGLFLSYLMTEEKFGNILVTSPTYYSSQEI-FNFVIKGLDA 287

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
           L  ++                                     S  +  +     N  G  
Sbjct: 288 LNVKYKLTTSKD--------------------GKIMKIATGESRVKWVSPDLARNEEGDL 327

Query: 195 VFNDEASGTPDIINKSI 211
           +  DEA+         I
Sbjct: 328 IVVDEAAAIGMEFLDYI 344


>gi|167565026|ref|ZP_02357942.1| phage-related DNA maturase [Burkholderia oklahomensis EO147]
          Length = 601

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/342 (11%), Positives = 78/342 (22%), Gaps = 78/342 (22%)

Query: 68  SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-SIICIANSETQLKNTLWA 126
             +   +    +  I A RGIGK+ L A   LW +  +     I+ ++ S T+ K   + 
Sbjct: 57  RRMGEPDKKFREDIIEAFRGIGKSYLTAGFALWRLYRKAFSEKILVVSASGTKAKE--FV 114

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS------------KHYTITCR 174
            ++K L M                + W  ++   S+                        
Sbjct: 115 SMAKTLLMTMDVFEHMRPRDDQRDTAWSFDVNGASISQSPSVKAVGITGQITGSRATLII 174

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGT------------PDIINKSILGFFTELNPNR 222
               E  D          +    +E +                   +SI     +     
Sbjct: 175 ADDIEVTDNSRTEEARERLLHKTNEFAAIKVTGGADVIFLGTPQTEESIYTKLIKEMGAT 234

Query: 223 FWIM---TSNTRRLNGWFYDI-------FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISR 272
            WI+        +   + +            P         D +        F+E  +  
Sbjct: 235 GWILPARYPMPDKRQSYVFKREGGSEIDCLSPRARAVDLDADLQWKPTDPERFNEMELQN 294

Query: 273 YGLDSDVARI----------------------EILGQFPQQEVNNF-------------- 296
                                            ++   P +                   
Sbjct: 295 RESKGRSYFALQFQLDTSLSDAERYPLKQHDLIVMACNPFKAPQIVQWGHDSNGRNKRID 354

Query: 297 -----IPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTV 333
                   +     +  ++    Y   ++  D +G G D+T 
Sbjct: 355 LMNYGFTGDSWLAPLFVDSEWREYEQSLLFVDPSGRGKDETA 396


>gi|27365517|ref|NP_761045.1| Helicase-like protein [Vibrio vulnificus CMCP6]
 gi|27361665|gb|AAO10572.1| Helicase-related protein [Vibrio vulnificus CMCP6]
          Length = 968

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 52/184 (28%), Gaps = 34/184 (18%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P+  QL+ ++ +                +  +  G G+GKT L+A    +         +
Sbjct: 218 PNSAQLDALQRLSETRQKGNV-------RGLVVMGTGMGKTWLSA----FDAKQLEAKRV 266

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + +A+ E  L   L      W                   +G+Y    ++          
Sbjct: 267 LFVAHREEILTQALMTFAKLW---------------PQKSAGYYHGKSKERNK-----EM 306

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
           +     +  +        + H   +  DE          +I    +   P     +T+  
Sbjct: 307 LFASVQTLGKAAHLKHFASDHFDYIVVDEFHHASTKTYLNI---LSYFEPKFLLGLTATP 363

Query: 231 RRLN 234
            R +
Sbjct: 364 ERTD 367


>gi|88858953|ref|ZP_01133594.1| Mu-like prophage FluMu protein gp28 [Pseudoalteromonas tunicata D2]
 gi|88819179|gb|EAR28993.1| Mu-like prophage FluMu protein gp28 [Pseudoalteromonas tunicata D2]
          Length = 593

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/321 (12%), Positives = 83/321 (25%), Gaps = 71/321 (22%)

Query: 57  EFMEAVDVHC----HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
           E ++ +          +   +     +  I   R IG T   A+   +         I  
Sbjct: 139 EMLKELKDKLLYPHQKHWFENQNHRARF-ILKPRQIGATFYFAFEAFYDAVVNGRNKIFI 197

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            A S  Q +       +  +++       E+    +  +    + ++      +      
Sbjct: 198 SA-SRDQAEVF----KANIVALCREHFNIELTGSPMVLNLAGGKTVKLIFKSTN------ 246

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232
            RT   E  D            ++ DE    P+      L      + +      S    
Sbjct: 247 ARTAQSESGD------------LYIDEVFWIPNYKTLRGLAQAMATHKHLRITYFSTPSV 294

Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-------- 284
            +   YD +N     W R        E      H+ + +    +  + R  +        
Sbjct: 295 TSHEAYDHWNGK---WYRKTKACNDPEFAIDVSHKSLKNGRFCEDGIWRQMLTVHDVVNS 351

Query: 285 ----------LGQFPQQEVNNFIPHNYIEEAMS----------------------REAID 312
                       ++   E NN     +I++A S                           
Sbjct: 352 GFDRIDISVLENEYSTDEFNNLFMCKFIDDAHSAFNLKQIMDCVGDSTKWTDFNLEWERP 411

Query: 313 DLYAPLIMGCDIAGEGGDKTV 333
               P+++G D A  G   +V
Sbjct: 412 FALRPVVIGFDPARFGDKASV 432


>gi|331003174|ref|ZP_08326682.1| hypothetical protein HMPREF0491_01544 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412930|gb|EGG92309.1| hypothetical protein HMPREF0491_01544 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 762

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 54/188 (28%), Gaps = 11/188 (5%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
           +   P+  Q + MEA+          +    +   +    G GKT   +  +L     R 
Sbjct: 28  NIRSPYEHQKKAMEAL-------DKINKEESYSTLVVLPTGGGKTYTASMWLLKNAIDRK 80

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
              I+ IA+ +  L     AE  +  +           S  +       +     +  D 
Sbjct: 81  -KKILWIAHRQMLLDQA--AESFQKFAYAEVMPHISSFSFRIVSGASSHDR-TIDIKADD 136

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
               I+  +                 + +  DEA  +     + ++ +  E   N   I 
Sbjct: 137 NLLIISKDSIGRNIDRLDKWLEGEKELYLVVDEAHHSTAKTYRKVINYVKEKVLNLKLIG 196

Query: 227 TSNTRRLN 234
            + T    
Sbjct: 197 LTATPFRT 204


>gi|315612672|ref|ZP_07887584.1| conserved hypothetical protein [Streptococcus sanguinis ATCC 49296]
 gi|315315259|gb|EFU63299.1| conserved hypothetical protein [Streptococcus sanguinis ATCC 49296]
          Length = 881

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 59/196 (30%), Gaps = 30/196 (15%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            ++Q + ++    +      +         ++A  G GKTT+        +  R G   +
Sbjct: 15  RQYQKQVLDRFQDYQADGHVH--------LVAAP-GSGKTTIG-----IELIARFGNPAL 60

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +  +          E  +W+  +      + Q LS   S    E+   ++      ++ 
Sbjct: 61  ILVPT------VTIRE--QWVDRIQTAFLEDGQRLSDLVSQNLKEMKVLTIVTYQAFHSA 112

Query: 172 TCRTYSEERPDTFVG--------PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
             +  S+E  +                    +  DE     +   KS+  F  +  P + 
Sbjct: 113 MNQLQSQEDGEAEDFVGFDLLASLRAQKVATLCLDECHHLRNEWWKSLEAFRKQYGPLKL 172

Query: 224 WIMTSNTRRLNGWFYD 239
             +T+     +     
Sbjct: 173 ISLTATPPYDSEPELW 188


>gi|291236967|ref|XP_002738409.1| PREDICTED: Dicer Related Helicase family member (drh-1)-like
           [Saccoglossus kowalevskii]
          Length = 877

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/190 (12%), Positives = 47/190 (24%), Gaps = 20/190 (10%)

Query: 14  ELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHF-SQPHRWQLEFMEAVDVHCHSNVNN 72
           +L   L   E      N            +P E    +   +Q E ++            
Sbjct: 149 KLMVTLNVDETDTDKMNAAENAESSDKVDEPEEDIVIELRPYQAELVK------------ 196

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
            +       +SA  G GKT + A++ L  +  R    ++ + N    ++     E     
Sbjct: 197 PSIFGHNVIVSAPTGSGKTRIAAFITLNHLKQRENAKVLLLVNKVPLVEQHYKKEFKLLT 256

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
           S           +  +       +     +        +          +       T  
Sbjct: 257 SKYKVSKICGESAARVSLKHLVEKNDVVILTAQILENALN-------NGEDNEKLELTDF 309

Query: 193 MAVFNDEASG 202
             +  DE   
Sbjct: 310 SLLIFDECHH 319


>gi|238484115|ref|XP_002373296.1| DEAD/DEAH box helicase, putative [Aspergillus flavus NRRL3357]
 gi|220701346|gb|EED57684.1| DEAD/DEAH box helicase, putative [Aspergillus flavus NRRL3357]
          Length = 1678

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 65/230 (28%), Gaps = 22/230 (9%)

Query: 39  GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98
           G    P  +  +P +WQ E ++ +D                  + A    GKT ++ + +
Sbjct: 587 GSAPDPRVYDFEPDKWQREILDQIDA------------RKSLFVVAPTSAGKTFISFYAI 634

Query: 99  LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
             ++       I+ +A ++  +                +        L++H   +     
Sbjct: 635 KQILEDDNEGVIVYVAPTKALVNQIA---AEVQARFSKNFKETGKSVLAIHTRDYRINNP 691

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218
                + +  + +     +    D +    ++    +  DE        +  I      L
Sbjct: 692 TGCQVLITVPHILQIMLLAPANADPW----SSRVKRIIFDEIHCIGQADDGVIWEQLLLL 747

Query: 219 NPNRFWIM---TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265
            P     +     N +  N W          D K  +  TR  +     +
Sbjct: 748 APCPIIALSATVGNPQEFNKWLELTQRANGNDLKMIEHSTRYSDLRKYTY 797


>gi|309359929|emb|CAP32084.2| hypothetical protein CBG_13269 [Caenorhabditis briggsae AF16]
          Length = 800

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/169 (11%), Positives = 48/169 (28%), Gaps = 16/169 (9%)

Query: 40  IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99
             G  L+  +    +Q + +  +  +  +             +    G GKT     ++ 
Sbjct: 323 NLGIDLKPSTTLRPYQEKSLRKMFGNSRARSG--------VIVLPC-GAGKT-----LVG 368

Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159
               T      + +ANS   ++   W    K  S +  +        +  P+   A+  +
Sbjct: 369 VTAVTTVNKRCLVLANSNVSVEQ--WRAQFKLWSTIQDKQLVRFTREAKDPAPSGADATK 426

Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208
             + I +          + +  +            +  DE    P  + 
Sbjct: 427 PVVCISTYSMVAYSGRRTLQAEEAMKFIEKQEWGLLLLDEVHTIPAKMF 475


>gi|308483808|ref|XP_003104105.1| hypothetical protein CRE_01011 [Caenorhabditis remanei]
 gi|308258413|gb|EFP02366.1| hypothetical protein CRE_01011 [Caenorhabditis remanei]
          Length = 797

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/169 (11%), Positives = 48/169 (28%), Gaps = 16/169 (9%)

Query: 40  IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99
             G  L+  +    +Q + +  +  +  +             +    G GKT     ++ 
Sbjct: 306 NLGIDLKPSTTLRPYQEKSLRKMFGNSRARSG--------VIVLPC-GAGKT-----LVG 351

Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159
               T      + +ANS   ++   W    K  S +  +        +  P+   A+  +
Sbjct: 352 VTAVTTVNKRCLVLANSNVSVEQ--WRAQFKLWSTIQDKQLVRFTREAKDPAPSGADATK 409

Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208
             + I +          + +  +            +  DE    P  + 
Sbjct: 410 PVVCISTYSMVAYSGRRTLQAEEAMKFIEKQEWGLLLLDEVHTIPAKMF 458


>gi|268572763|ref|XP_002641406.1| Hypothetical protein CBG13269 [Caenorhabditis briggsae]
          Length = 789

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/169 (11%), Positives = 48/169 (28%), Gaps = 16/169 (9%)

Query: 40  IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99
             G  L+  +    +Q + +  +  +  +             +    G GKT     ++ 
Sbjct: 312 NLGIDLKPSTTLRPYQEKSLRKMFGNSRARSG--------VIVLPC-GAGKT-----LVG 357

Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159
               T      + +ANS   ++   W    K  S +  +        +  P+   A+  +
Sbjct: 358 VTAVTTVNKRCLVLANSNVSVEQ--WRAQFKLWSTIQDKQLVRFTREAKDPAPSGADATK 415

Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208
             + I +          + +  +            +  DE    P  + 
Sbjct: 416 PVVCISTYSMVAYSGRRTLQAEEAMKFIEKQEWGLLLLDEVHTIPAKMF 464


>gi|17556358|ref|NP_499487.1| hypothetical protein Y66D12A.15 [Caenorhabditis elegans]
 gi|15795210|emb|CAC70144.1| C. elegans protein Y66D12A.15, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 789

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/169 (11%), Positives = 48/169 (28%), Gaps = 16/169 (9%)

Query: 40  IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99
             G  L+  +    +Q + +  +  +  +             +    G GKT     ++ 
Sbjct: 312 NLGIDLKPSTTLRPYQEKSLRKMFGNSRARSG--------VIVLPC-GAGKT-----LVG 357

Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159
               T      + +ANS   ++   W    K  S +  +        +  P+   A+  +
Sbjct: 358 VTAVTTVNKRCLVLANSNVSVEQ--WRAQFKLWSTIQDKQLVRFTREAKDPAPSGADATK 415

Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208
             + I +          + +  +            +  DE    P  + 
Sbjct: 416 PVVCISTYSMVAYSGRRTLQAEEAMKFIEKQEWGLLLLDEVHTIPAKMF 464


>gi|302677857|ref|XP_003028611.1| hypothetical protein SCHCODRAFT_78566 [Schizophyllum commune H4-8]
 gi|300102300|gb|EFI93708.1| hypothetical protein SCHCODRAFT_78566 [Schizophyllum commune H4-8]
          Length = 1005

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/298 (14%), Positives = 85/298 (28%), Gaps = 42/298 (14%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
            E +  +         +         +    G GKT+     +  L+   P   I+  A 
Sbjct: 504 EEQLRTIAAVLRLPPGSPP-----LIVFGPPGTGKTSTIVEAIHQLLQRDPNTRILACAP 558

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK-------- 167
           S     + L  ++S   ++L     F + SLS   S     L +  +  D+         
Sbjct: 559 S-NTAADGLAQKLSG--ALLDRTQLFRLNSLSRKVSDLPQALKKFCLINDNTVFAVPPKD 615

Query: 168 ---HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
               Y +   T       + +G    H   +F DE +   +    +++   T ++ +   
Sbjct: 616 VLASYRVVVSTCITAGVPSGLGIRAGHFDWIFIDECAQATEP--AAMIPLKTLVDKSTNV 673

Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE-----------GIDSGFHEGIISRY 273
           ++  + ++L    +  F   L   + Y       +                  +   S  
Sbjct: 674 VLAGDPQQLGPIVHSKFANTLGLKESYMGRLMEQQEVYDLKNSQHLFRIMKLIKSFRSHP 733

Query: 274 GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL----IMGCDIAGE 327
            L     R    G+                     E +     P+    ++G D A E
Sbjct: 734 ALLDYSNRRFYNGELIASAD-----PILTHSLEGSEILPKKSFPILFHAVIGKD-ARE 785


>gi|217971577|ref|YP_002356328.1| type III restriction protein res subunit [Shewanella baltica OS223]
 gi|217496712|gb|ACK44905.1| type III restriction protein res subunit [Shewanella baltica OS223]
          Length = 1055

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 61/226 (26%), Gaps = 28/226 (12%)

Query: 10  KLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSN 69
               E       A       N +      G +        +P   Q E +E +       
Sbjct: 279 WESNEFELFSGDASSKEKLNNALKEAKGSGTESSSFHFDIKPFAHQREILEQLA------ 332

Query: 70  VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129
           V  S    FK  I A  G GKT ++A+         P  + + +A+ +      L   +S
Sbjct: 333 VERSVHGRFKNLIVAATGTGKTIISAFDFARFYKLHPDANFLFVAHRQ----EILQQALS 388

Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189
            +  +L +  + E+      P+ +                 +     S       +    
Sbjct: 389 AYRGVLKNNQFGELWVAEHKPNSYKH---------------LFASIQSLNLQLDNLPLAA 433

Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
                +  DE             G      P     +T+   R +G
Sbjct: 434 DFYDYIVIDEVHHVAASSY---RGLLAHFEPTILLGLTATPERHDG 476


>gi|152998912|ref|YP_001364593.1| type III restriction protein res subunit [Shewanella baltica OS185]
 gi|151363530|gb|ABS06530.1| type III restriction protein res subunit [Shewanella baltica OS185]
          Length = 1055

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 61/226 (26%), Gaps = 28/226 (12%)

Query: 10  KLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSN 69
               E       A       N +      G +        +P   Q E +E +       
Sbjct: 279 WESNEFELFSGDASSKEKLNNALKEAKGSGTESSSFHFDIKPFAHQREILEQLA------ 332

Query: 70  VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129
           V  S    FK  I A  G GKT ++A+         P  + + +A+ +      L   +S
Sbjct: 333 VERSVHGRFKNLIVAATGTGKTIISAFDFARFYKLHPDANFLFVAHRQ----EILQQALS 388

Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189
            +  +L +  + E+      P+ +                 +     S       +    
Sbjct: 389 AYRGVLKNNQFGELWVAEHKPNSYKH---------------LFASIQSLNLQLDNLPLAA 433

Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
                +  DE             G      P     +T+   R +G
Sbjct: 434 DFYDYIVIDEVHHVAASSY---RGLLAHFEPTILLGLTATPERHDG 476


>gi|126172615|ref|YP_001048764.1| type III restriction enzyme, res subunit [Shewanella baltica OS155]
 gi|125995820|gb|ABN59895.1| type III restriction enzyme, res subunit [Shewanella baltica OS155]
          Length = 1055

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 61/226 (26%), Gaps = 28/226 (12%)

Query: 10  KLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSN 69
               E       A       N +      G +        +P   Q E +E +       
Sbjct: 279 WESNEFELFSGDASSKEKLNNALKEAKGSGTESSSFHFDIKPFAHQREILEQLA------ 332

Query: 70  VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129
           V  S    FK  I A  G GKT ++A+         P  + + +A+ +      L   +S
Sbjct: 333 VERSVHGRFKNLIVAATGTGKTIISAFDFARFYKLHPDANFLFVAHRQ----EILQQALS 388

Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189
            +  +L +  + E+      P+ +                 +     S       +    
Sbjct: 389 AYRGVLKNNQFGELWVAEHKPNSYKH---------------LFASIQSLNLQLDNLPLAA 433

Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
                +  DE             G      P     +T+   R +G
Sbjct: 434 DFYDYIVIDEVHHVAASSY---RGLLAHFEPTILLGLTATPERHDG 476


>gi|154247555|ref|YP_001418513.1| hypothetical protein Xaut_3628 [Xanthobacter autotrophicus Py2]
 gi|154161640|gb|ABS68856.1| protein of unknown function DUF264 [Xanthobacter autotrophicus Py2]
          Length = 690

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/244 (11%), Positives = 58/244 (23%), Gaps = 41/244 (16%)

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQ-SMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
             L  +     +      +       +  S+    +   ++  T ++         HN  
Sbjct: 324 RRLMPKSAKVWEGRRAFNTRGDHHYAKVVSVEYIGRGPVVSLGTSTKTLIADGFLGHNCT 383

Query: 192 GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS--NTRRLNGWFYDIFNIPLEDW- 248
              ++ +E S  P            ++ P          N      W Y  F    +   
Sbjct: 384 ---LYFNECSQIPYSSILVARTRLAQVVPGLMQRALYDLNPAGTGHWTYREFIEGRDPIS 440

Query: 249 -----------KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297
                        +       + +   F   + +         R    G +  +      
Sbjct: 441 GAPLSAPDNFQHMFLNPGDNAKNLSPEFLRSLEALPEKQR---RRFFDGMYVAEIDGALW 497

Query: 298 PHNYIEEAMSREAIDDLYA--PLIMGCD------------------IAGEGGDKTVVVFR 337
             + IE   S       +    +++G D                  +AG   D T V+  
Sbjct: 498 TLDLIERCRSEPIAPGDHRLRRIVIGVDPSGAANKEDARSDEIGIVVAGMMDDGTAVILE 557

Query: 338 RGNI 341
            G +
Sbjct: 558 DGTV 561


>gi|293433090|ref|ZP_06661518.1| terminase [Escherichia coli B088]
 gi|291323909|gb|EFE63331.1| terminase [Escherichia coli B088]
          Length = 591

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/321 (11%), Positives = 81/321 (25%), Gaps = 34/321 (10%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             W  E +     H   N+           I   R IG T   A+             I 
Sbjct: 140 DIWAEEHLFEYQKHLRRNIGQQVRN-----ILKSRQIGATWYFAFEAFENAVMTGDPQIF 194

Query: 112 CIANSET----QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
             A+       +      AE    +++  +       +     S         S  +   
Sbjct: 195 LSASKVQAEYFRSYIVNIAEQYFGITLTGNPIRLSNGAELRFLSTNKNTAQSYSGHLYCD 254

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
            Y             + +  H+      F+  ++ T           + + +  R     
Sbjct: 255 EYFWVPNFARLNEVASAMATHDKWRTTYFSTPSAKTHQAYPFWTGEEWKQGSKKRAAAQF 314

Query: 228 SNTRRLNGWFYDIFNIPLEDWK-RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
            +   +          P   W+    ++     G +    E + +RY  ++    +  + 
Sbjct: 315 PSFDEMRNGGRLC---PDGQWRYVITMEDAIAGGFNLANIEKLRNRY--NTATFNMLYMC 369

Query: 287 QFPQQEVNNFIPHNYIEEA-----MSREAIDDLYAPL----IMG-CDIAGEGGDKTVVVF 336
            F     ++    + +E         ++   D   P     + G  D A  G D +  V 
Sbjct: 370 VFVD-SKDSVFSFSDLEACGVEVDTWQDHNPDAARPFGDRPVWGGFDPARSG-DLSCFVI 427

Query: 337 RRGN-------IIEHIFDWSA 350
                       +  + +W  
Sbjct: 428 IAPPMYAAEKFRVLKVINWKG 448


>gi|15834223|ref|NP_312996.1| portal protein [Escherichia coli O157:H7 str. Sakai]
 gi|168761523|ref|ZP_02786530.1| protein gp28 [Escherichia coli O157:H7 str. EC4501]
 gi|217326314|ref|ZP_03442398.1| hypothetical protein ESCCO14588_1761 [Escherichia coli O157:H7 str.
           TW14588]
 gi|13364445|dbj|BAB38392.1| putative portal protein [Escherichia coli O157:H7 str. Sakai]
 gi|189367967|gb|EDU86383.1| protein gp28 [Escherichia coli O157:H7 str. EC4501]
 gi|217322535|gb|EEC30959.1| hypothetical protein ESCCO14588_1761 [Escherichia coli O157:H7 str.
           TW14588]
 gi|326348041|gb|EGD71751.1| Phage terminase, large subunit [Escherichia coli O157:H7 str. 1044]
          Length = 554

 Score = 47.2 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 72/253 (28%), Gaps = 39/253 (15%)

Query: 86  RGIGKTTLNAWMMLWLIS---TRPGMSIICIANSETQLKNTL--WAEVSKWLSMLPHRHW 140
           R  G T   A   +   +    R G ++  + + +      +   A  S+  + L     
Sbjct: 67  RRTGLTWAEAGRNVITAAKPKRRGGRNVFYVGSKQEMALEYISACALFSRAFNQLADADV 126

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
           +E             E+L   +   +  + I   +     P    G        V  DEA
Sbjct: 127 YEQT---FWDRDKKEEILTYMIRFPNSGFKIQALSSR---PSNLRGLQGD----VVIDEA 176

Query: 201 SGTPDIINKSILGF--FTELNPNRFWIMTSN-TRRLNGWFYDIFNIPLEDWKRYQIDTRT 257
           +   + +++ +      T        I T N    L   +        +D+  ++I    
Sbjct: 177 AF-HESLDELLKAAMALTMWGARVRIISTHNGVDNLFNQYIQEAREGRKDYSVHRITLDD 235

Query: 258 ------------------VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299
                                 +  + + +        D    E     P++    +IPH
Sbjct: 236 AIADGLYRRICYVTGREWSPESEQKWRDDLYKNAPTREDA-DEEYGCI-PKKSGGAYIPH 293

Query: 300 NYIEEAMSREAID 312
             IE AM R+   
Sbjct: 294 ALIEMAMLRDIPI 306


>gi|166030771|ref|ZP_02233600.1| hypothetical protein DORFOR_00445 [Dorea formicigenerans ATCC
           27755]
 gi|166029353|gb|EDR48110.1| hypothetical protein DORFOR_00445 [Dorea formicigenerans ATCC
           27755]
          Length = 456

 Score = 46.9 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/178 (11%), Positives = 45/178 (25%), Gaps = 7/178 (3%)

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GMSIICIANSETQLK 121
                +           +    G  KT  +  + L  I   P      I+    +     
Sbjct: 241 FLQEALMKPADEAPLVIVKGMAGTAKTFYSLAVGLEKILNNPTGEYRRILICRPNAQFDS 300

Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
           +  +    +   + P      M +L            +    +  K   I  R   +   
Sbjct: 301 DIGFLPGDEQEKISPL-MRPIMDNLEQLIDSDEEARYQDEQELQGKIEEIFARGIIQAEA 359

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
             F+   +     +  DEA          + G  T        ++  +  +++  F D
Sbjct: 360 MNFIRGRSFVNTYLIIDEAQNMTPNQ---VKGIITRAGKGTKIVLLGDPNQIDRPFLD 414


>gi|148241989|ref|YP_001227146.1| hypothetical protein SynRCC307_0890 [Synechococcus sp. RCC307]
 gi|147850299|emb|CAK27793.1| Hypothetical protein SynRCC307_0890 [Synechococcus sp. RCC307]
          Length = 98

 Score = 46.9 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 28/68 (41%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
            + +GR  GKT L     + L  T+PG  +  +A S  Q K+  WA++   +        
Sbjct: 24  VVFSGRRFGKTRLMLTAGVELCLTKPGAKVFHLAPSRKQAKDIAWADLKGVVLQSLLSPV 83

Query: 141 FEMQSLSL 148
           +      L
Sbjct: 84  WVDTEKPL 91


>gi|328774208|gb|EGF84245.1| hypothetical protein BATDEDRAFT_9192 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 581

 Score = 46.9 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/258 (12%), Positives = 70/258 (27%), Gaps = 35/258 (13%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              ++   G+GKT L A +M       P   II +A ++          V++ +      
Sbjct: 52  NTLVALPTGLGKTFLAAVVMYNYYRWFPEGKIIFMAPTK--------PLVAQQIEAC--- 100

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP--HNTHGMAVF 196
             F++  +    +       +    I             +   +            + + 
Sbjct: 101 --FKITGIHQDMTYELTGTTKSETRIGIWKQKRVFFLTPQVMQNDLRSAACSADKVVLLV 158

Query: 197 NDEASGTP-DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255
            DEA     +     ++   ++ +     +  S T   +        +     +  +I T
Sbjct: 159 VDEAHRATGNYAYCEVIRELSKASSPFRVLALSATP-GSDMKAVQHVVNNLLIQHIEIRT 217

Query: 256 RTV----EGIDSGFHEGIISRYGLDSDV-----------ARIEI--LGQFPQQEVNNFIP 298
                    I S   E II                      + +   G F +++      
Sbjct: 218 EDSFDIRPFIFSRQIEEIIVSLTPQITRIVDAFAKVVSIFLVRLCNHGVFYEKDPRAVSR 277

Query: 299 HNYIEEAMSREAIDDLYA 316
           +  ++ A  R   +   A
Sbjct: 278 YALLD-ARKRWIDNHKDA 294


>gi|320589733|gb|EFX02189.1| dead deah box DNA helicase [Grosmannia clavigera kw1407]
          Length = 1472

 Score = 46.9 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/240 (8%), Positives = 56/240 (23%), Gaps = 20/240 (8%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           +P  WQ + ++A+D                  + A    GKT ++ + M  ++       
Sbjct: 534 EPDGWQRKVLDAIDE------------RQSLFVVAPTSAGKTFISFYAMKQVLKQSNDGV 581

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ--SMGIDSK 167
           ++ +A ++  +        +++    P          ++               +     
Sbjct: 582 LVYVAPTKALVNQVAAEIEARFSKTFPQSSSGGKSVWAIKTRDQCINNPTGCQVLVTVPH 641

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM- 226
              I   + S                 +  DE           +      + P     + 
Sbjct: 642 MLQILLMSPSSMEGSNPWPLRLRW---IIFDEIHSIGQSDEGVVWEQLVLMAPCPIIALS 698

Query: 227 --TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
               N      W            +     +R  +  +  +      ++   +       
Sbjct: 699 ATVGNPYAFRDWLTSCEKSKGRQIRMITHSSRYSDLRNYVWMPSRHFQFSGVTAEDSRRW 758


>gi|328552921|gb|AEB23413.1| putative helicase, ATP-dependent, intein-containing [Bacillus
           amyloliquefaciens TA208]
          Length = 1021

 Score = 46.9 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/273 (11%), Positives = 63/273 (23%), Gaps = 49/273 (17%)

Query: 96  WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
            +        P +++   A+++       W E  +             + L  +PS    
Sbjct: 545 MVAYHTAICFPNVTLAITASTKESAVKI-WKEKHE-------------EILRFYPSIKDE 590

Query: 156 ELLEQSMGIDSKHYTITCRTYS-EERPDTFVGPHNTHGMAVFNDEASGTP-DIINKSILG 213
              E       +                +  G     G     +E++    D+ + +I  
Sbjct: 591 IKSENFSKDSGRVEFQNGAIIDNLANAQSSKGLRRRRGSL---EESALIDKDLYDDAIEP 647

Query: 214 -------FFTELNPNRFWIMTSNTRRLNGWFYDIFNIP----------LEDWKRYQIDTR 256
                    T            N    +G+                  L+    +  D R
Sbjct: 648 IFNIPRTTMTGEIDPAELNGQINRFSTSGYKNSDEYEKILTMVKETGDLKGSFVFGSDWR 707

Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN-YIEEAMSREAI---- 311
                       I      +    R   L  +        I  +  I+            
Sbjct: 708 IPIHFGRQKMSVINKARQGNVTRFRQNYLCDWIGASDGALINISKLIKARTITHPELSCP 767

Query: 312 DDLYA-----PLIMGCDIAG---EGGDKTVVVF 336
            D          ++G D+A    E  +KT +V 
Sbjct: 768 RDKNKNFLLHEYVIGVDVARSAAESNNKTAIVV 800


>gi|88195251|ref|YP_500054.1| phage terminase large subunit [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|87202809|gb|ABD30619.1| phage terminase, large subunit, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|329729404|gb|EGG65809.1| putative phage terminase, large subunit [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 563

 Score = 46.9 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 91/348 (26%), Gaps = 60/348 (17%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
             WQ   + ++    H           +  I  GR  GKTT  + +  + +S     G  
Sbjct: 81  QPWQHFIIGSLFGWVHK--ETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAE 138

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I  +AN   Q +  L+ E    +   P                   +L E    +  + +
Sbjct: 139 IHLLANVMKQAR-ILFDESKAMIKASP-------------------KLRENFRPLRDEIH 178

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTS 228
                +    +          +      DE     D  +   I              +T+
Sbjct: 179 YDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITT 238

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRT----------------------VEG----ID 262
              +L+G   ++     +   R   D RT                             ID
Sbjct: 239 AGYQLDGPLVNMVEAGRDTLDRIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSID 298

Query: 263 SGFHEGIISRYGLDSDV---ARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPL 318
               +    +     D       +    F   +  +FI +  +++        +    P 
Sbjct: 299 LAEMKEEWEKAKRTPDERGDFITKRFNIFANNDEMSFIDYPTLQKNNDIISLDELEGRPC 358

Query: 319 IMGCDIAGEGGDKTV----VVFRRGNIIEHIFDWSAKLIQETNQEGCP 362
            +G D++    D T          G +      W  K   E + E  P
Sbjct: 359 TIGYDLSET-EDFTAACATFALDNGKVAVLTHSWIPKHKVEYSNEKIP 405


>gi|254508223|ref|ZP_05120347.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus 16]
 gi|219548840|gb|EED25841.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus 16]
          Length = 403

 Score = 46.9 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 44/316 (13%), Positives = 77/316 (24%), Gaps = 50/316 (15%)

Query: 43  KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102
                + +P + Q E +                       SA  G GKT       L  +
Sbjct: 11  IEEMGYDRPTQIQAEAIPQALDG------------RDILASAPTGTGKTAAFVLPALQYL 58

Query: 103 STRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
              P        I+ +  +                     R   +   L++       + 
Sbjct: 59  QDFPRRKPGPARILILTPTRELAMQV----------ADQARALAKHTKLNIFTITGGVQY 108

Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217
            E +  +      +                       +  DEA    D+     +   + 
Sbjct: 109 QEHADILGKTQDIVVATPGRLMEYINAERFDCRAIEWLVLDEADRMLDMGFGPTVDRLSN 168

Query: 218 LNPNRFWIMTSNTR----RLNGWFYDIFNIP---------LEDWKRYQIDTR-TVEGIDS 263
               R   +  +       + G+  D+   P          E  K  Q   R        
Sbjct: 169 ECRWRKQTLLFSATLEGKGVEGFTADLLKDPADIDAEPSRRERKKIAQWYHRADDMNHKL 228

Query: 264 GFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AIDDL 314
              + II+     S V     E LG+   +     IP  +I  E    R         D 
Sbjct: 229 ELLKKIITDQAERSIVFLKTRERLGELRTELEKAQIPCAWIQGEMPQDRRNNAIARFRDG 288

Query: 315 YAPLIMGCDIAGEGGD 330
              +++  D+A  G D
Sbjct: 289 TVNVLLATDVAARGID 304


>gi|194899456|ref|XP_001979275.1| GG24642 [Drosophila erecta]
 gi|190650978|gb|EDV48233.1| GG24642 [Drosophila erecta]
          Length = 1450

 Score = 46.9 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 55/211 (26%), Gaps = 11/211 (5%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              +    G+GKT + A +M       P   I+ +A +   +   + A       ++P  
Sbjct: 77  NTLVVLPTGLGKTFIAAVLMYNFYRWYPKGKIVFMAPTRPLVSQQIHASQK----IMPFP 132

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               +Q     P    AEL +      +    +          D            +  D
Sbjct: 133 SADTVQLTGQLPRPKRAELWDSKRVFFATPQVVHS---DMLTADGGSNFPFGSIKLIVVD 189

Query: 199 EAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLN--GWFYDIFNIPLEDWKRYQIDT 255
           EA           +       N N   +  S T             N+ + + +     +
Sbjct: 190 EAHRAKGRYAYTQVTDCLMARNRNFRILALSATPGRTMEDVAAVCQNLYISNLQVRWDTS 249

Query: 256 RTV-EGIDSGFHEGIISRYGLDSDVARIEIL 285
             V   I       I+          R  +L
Sbjct: 250 IDVQPYIHRRTIRTIVVSLKERIKEPRERLL 280


>gi|254415209|ref|ZP_05028971.1| CRISPR-associated helicase Cas3 domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196178015|gb|EDX73017.1| CRISPR-associated helicase Cas3 domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 703

 Score = 46.9 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 50/235 (21%), Gaps = 25/235 (10%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEH-------------- 47
           P         E  L  ++  A      ++       W     P                 
Sbjct: 153 PSHHPEHPLTEDLLIRIIFSALVDADRESAARFLGDWDTVTPPTIEQLISQFETHYHHLI 212

Query: 48  ---FSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
                 P          +  HC +      P  F+   +   G GKT       L     
Sbjct: 213 QNAADTPINA---IRRDIYRHCQAAATLK-PGFFRL--TTPTGGGKTLSVMAFALHHAQN 266

Query: 105 RPGMSIICIANSETQLKNT--LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
                II      + ++    ++ E     ++L H       + +     +         
Sbjct: 267 YQQKRIIYCPPFTSIIEQAAQVYRESFSENAVLEHHSGVVFDTHTDELHHYQFAAQRWDY 326

Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217
            I          +     P      H      +  DE    P    K I+     
Sbjct: 327 PIIVSTTVQLFESLFSRHPSQCRKVHRITNSVIILDEVQALPTKYLKPIMSMLRG 381


>gi|301331685|gb|ADK70800.1| terminase [Elephant endotheliotropic herpesvirus 1A]
          Length = 660

 Score = 46.9 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/204 (11%), Positives = 61/204 (29%), Gaps = 21/204 (10%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAI-SAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
           E+++ +    + N +  +    K  +    R  GKT +   ++ +LI     +S+  +A+
Sbjct: 175 EYIKRLFNIENVNTSVLDTFKHKTTVFLVPRRHGKTWILTPIITFLIKNFSNISVGYVAH 234

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
            +   ++ +  EV                   +  +    + +   +  +S+   +    
Sbjct: 235 QKHVSQHVM-KEVEILCRR------------EIPYTVENKDNVISVIRTNSRSCALFASC 281

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
           +                  +  DE++        +I+GF  +      +I + NT   + 
Sbjct: 282 F------NTNSIRGQSFNILLVDESNFIKKEALHAIIGFLAQSTAKIIFISSCNTSTQST 335

Query: 236 WFYDIFNIPLEDW-KRYQIDTRTV 258
            F                      
Sbjct: 336 SFLAHVKKTPTQILNVISYVCEEH 359


>gi|291335182|gb|ADD94806.1| hypothetical protein [uncultured phage MedDCM-OCT-S12-C102]
 gi|291336563|gb|ADD96112.1| hypothetical protein [uncultured organism MedDCM-OCT-S04-C6]
          Length = 555

 Score = 46.9 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 60/260 (23%), Gaps = 46/260 (17%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           I  G   GK+   A  M+  +  RP M I    +S           +  +   LP +   
Sbjct: 78  IFGGNRGGKSRYLASRMVRAMVNRPNMRIWSCHSSNDSSIQVQQPYIHTY---LPQQWLA 134

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
           + +++    +  + +    S            + + +           T    ++ DE  
Sbjct: 135 QKKAVRSVANISFTQKNGFSGRTIVGPN--HSQMWFKNYTQDLSTLEGTELDLIWFDEL- 191

Query: 202 GTPDIINKSILGFFTELNPNRFWIMT--------------------------------SN 229
             P    +++               T                                 N
Sbjct: 192 -VPQSWVETLKYRLVSRKGKMLITFTPIEGYSSAVKSAMEGAIIEETREAKLIDPNSPGN 250

Query: 230 -TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE----- 283
                 G             K +   +           +  +     +    R       
Sbjct: 251 IPGVPKGHMPYRARTKNGSGKIFWFYSEWNPYTPFDRLQKTLKGRTREELEIRAYGYVSN 310

Query: 284 -ILGQFPQQEVNNFIPHNYI 302
            + G+FP+    N +  + I
Sbjct: 311 PVTGKFPRFTDRNIVKASDI 330


>gi|150007526|ref|YP_001302269.1| putative phage large subunit terminase [Parabacteroides distasonis
           ATCC 8503]
 gi|149935950|gb|ABR42647.1| putative phage large subunit terminase [Parabacteroides distasonis
           ATCC 8503]
          Length = 422

 Score = 46.9 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/286 (9%), Positives = 71/286 (24%), Gaps = 41/286 (14%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTRPG-----MSIICIANSETQLKNTLWAEVSK 130
             F   I+ GRG GK+   +  +  L             I+    +      ++  E+ +
Sbjct: 16  EKFIILITGGRGSGKSFNASTFIERLTFELTPVEKIVHQILYTRYTMVSAGMSIIPEMME 75

Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
            + +     +F+     +      + ++ + +   S + T   ++               
Sbjct: 76  KIELDGTTKYFKTTKTDIVNKMTKSRIMFRGIKTSSGNQTAKLKSIQGITTFVCDEAEEW 135

Query: 191 HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE---D 247
                               I+    +       I+  N    N + Y  +        +
Sbjct: 136 TNE------------EEFDKIMLSIRKKGIQNRIIIIMNPCDSNHFIYKKYIENTHKLVE 183

Query: 248 WKRYQIDTRTVEGI--------------DSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293
               Q+   T   +                 F + +      + +     ++G++     
Sbjct: 184 IDGVQVQISTHPNVLHIHTTYLDNLENLSPEFLKEVEDMKVNNPEKYAHVVIGRWADVAE 243

Query: 294 NNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRG 339
                   I      +        + +G D      D +    R G
Sbjct: 244 GAVFKKWGI-----VDEFPAWAKKVAIGQDFGYT-HDPSA-SIRCG 282


>gi|114797384|ref|YP_761226.1| ATP-dependent DNA helicase domain-containing protein [Hyphomonas
            neptunium ATCC 15444]
 gi|114737558|gb|ABI75683.1| ATP-dependent DNA helicase, RecQ family/ UvrD/REP helicase domain
            protein [Hyphomonas neptunium ATCC 15444]
          Length = 1715

 Score = 46.9 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 57/233 (24%), Gaps = 17/233 (7%)

Query: 12   EQELHEMLMHAECVLSFKNFVMRFFP--W-GIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68
            EQ L  M         + +     F   W   +   L   + P  WQ + + ++      
Sbjct: 1049 EQGLISMNRALSLSHDYFSLERDVFLRRWLPNRSADLRRQTMPASWQ-KIVGSLGNRVQM 1107

Query: 69   NVNNSNPTIFKCAISAGRGIGKTTLNA--WMMLWLISTRPGMSIICIANSETQLKNTLWA 126
            ++ +         + AG G GKT +       L  +       I+ +A +    +  L  
Sbjct: 1108 DIVSDERDQTNVLVLAGPGSGKTKVLVHRIAFLIRVRREDPKGILVLAYNRHAAQEILVR 1167

Query: 127  EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ-------SMGIDSKHYTITCRTYSEE 179
              +         +     + ++   G                  I++    +     +  
Sbjct: 1168 LRALIGEDAAGVNISTCHAFAMRLVGMSFVGRSDMQTTADFDRAIEAATQLLNGDGLTTV 1227

Query: 180  RPDTFVGPHNTHGMAVFNDEASGT-PDII---NKSILGFFTELNPNRFWIMTS 228
              +            +  DE     P+              + +         
Sbjct: 1228 EAEAQRDTLVQGYRWILVDEYQDIGPNEHGLVAAIAGRSLDDPDQRLSLFAVG 1280


>gi|42518569|ref|NP_964499.1| RNA helicase [Lactobacillus johnsonii NCC 533]
 gi|41582854|gb|AAS08465.1| probable RNA helicase [Lactobacillus johnsonii NCC 533]
          Length = 461

 Score = 46.9 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 58/234 (24%), Gaps = 23/234 (9%)

Query: 37  PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
           P    G    +F +P + Q      +    +              + A  G GKT     
Sbjct: 15  PELQAGLEKINFKKPTKVQSSV---IPAFLNKK---------NVVVQAATGSGKTHAYLI 62

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
            +L +I     ++   +     +L N L+    +       R    +     +  G    
Sbjct: 63  PILNMIDESAPVTQAIVTAPSRELANQLYKVARQ------LRDASGLNISIEYLGGGNDR 116

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG-TPDIINKSILGFF 215
             +           I           +    +  +  A   DEA           +    
Sbjct: 117 NRQIEKAESRAPQLIIATPGRLHDFASKKFINLENVKAFIIDEADMTLDMGFLGQMDEIM 176

Query: 216 TELNPNRFWIMTSN--TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267
           ++L+        S     +L  +     + P  ++            I +   +
Sbjct: 177 SKLDKKAVLGAFSATIPVKLENFLRKYMSKP--EFIVIDNPAIIAPTIQNDLID 228


>gi|332800334|ref|YP_004461833.1| Terminase [Tepidanaerobacter sp. Re1]
 gi|332698069|gb|AEE92526.1| Terminase [Tepidanaerobacter sp. Re1]
          Length = 521

 Score = 46.9 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/318 (11%), Positives = 85/318 (26%), Gaps = 57/318 (17%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP--GMSI 110
            WQ + +  +      +      T +   +   +  GK+ L A + L+L       G  +
Sbjct: 34  PWQDKIVRDIFGTVKEDGYRQYNTAY---VEIPKKNGKSELAAAIALYLTCGDGEWGAEV 90

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
              A    Q                     F++    +       + ++  +      Y 
Sbjct: 91  YGCAADRQQASIV-----------------FDVAVDMVDQCPALKKRIKPVLSQKRLVYM 133

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
            T   Y     + +   H  +   V  DE    P+     ++   +     +       T
Sbjct: 134 PTASFYQVLSAEAY-TKHGLNVHGVVFDELHAQPNRQLYDVMTKGSGDARKQPLFFLITT 192

Query: 231 --RRLNGWFYDIFNIPLE----------------------DWKRYQIDTRTVEGIDSGFH 266
                +   Y++     +                      DW   ++  +    +D    
Sbjct: 193 AGTDRHSICYEVHQKAEDILRGKRVDPTFYPVIYGIDDDDDWADEKVWRKANPSLDHTID 252

Query: 267 EGIISRYGL-------DSDVARIEILGQFPQQEVNNFIPHNYIEEA-MSREAIDDLYAPL 318
              +            + ++ R   L Q+ +Q V  ++P +  +E     +         
Sbjct: 253 IEKVRAAFQNAKQNPAEENLFRQLRLNQWVKQSV-RWMPMHVWDECSFKVDPEKLKGRKC 311

Query: 319 IMGCDIAGEGGDKTVVVF 336
             G D++    D T  V 
Sbjct: 312 YGGLDLS-SSIDITAFVL 328


>gi|149180233|ref|ZP_01858738.1| DNA/RNA helicase [Bacillus sp. SG-1]
 gi|148852425|gb|EDL66570.1| DNA/RNA helicase [Bacillus sp. SG-1]
          Length = 814

 Score = 46.9 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 63/230 (27%), Gaps = 47/230 (20%)

Query: 9   QKLEQELHEMLM---HAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVH 65
           +  EQE  E ++      C  +             + K      +P   Q+E +E +   
Sbjct: 180 KWTEQEEVEAMLPEDEERCKDADVIH---------EEKGEYGTVEPRFAQIEALEEL--- 227

Query: 66  CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW 125
                        K  +    G+GKT L A       + +    ++ IA+ E  L     
Sbjct: 228 ----DKTYEEGYRKAMVIMATGLGKTYLAA-----FFAQQRFKRVLFIAHREEIL----- 273

Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185
                        H  E     + P         ++   ++     +  T S ++     
Sbjct: 274 -------------HQAEKSFNIVMPEASKGIYNGRTKEGEADFVFASVFTLSMKKH--LQ 318

Query: 186 GPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
             +      +  DE         + +    +   P     +T+   R + 
Sbjct: 319 AFNPDSFDLIVIDEFHHAAADSYQRL---LSYFQPEFLLGITATPDRNDN 365


>gi|298247861|ref|ZP_06971666.1| conserved hypothetical protein [Ktedonobacter racemifer DSM 44963]
 gi|297550520|gb|EFH84386.1| conserved hypothetical protein [Ktedonobacter racemifer DSM 44963]
          Length = 499

 Score = 46.9 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 84/289 (29%), Gaps = 32/289 (11%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            +Q    +A+         ++   +F       R +GK  L+A +  +L+      SI+ 
Sbjct: 34  PYQELVGDAILESVLEGRGDTFTVMF------ARQMGKNQLSATLEAYLLFCMREGSIVK 87

Query: 113 IANSET-QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            A +   Q  N+    +S   + L     ++    ++  +  +       +   +    +
Sbjct: 88  AAPTYKPQTINSRQRLLSLLDNPLMRNRVWKHYGYTIGMAPRHE-----QVPYQTGPRVM 142

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNT 230
                             T  + +  DEA    P+  +  +    +  N     ++    
Sbjct: 143 FFSAGPGAS-----IVGATASLLLEIDEAQSIDPNKYDTDLRPMASTTNATT--VLYGTA 195

Query: 231 RRLNGWFYDIFNIPLE------DWKRYQIDTRTVEGIDSG---FHEGIISRYGLDSDVAR 281
                    +    LE        + +  D RT+  I+     + E  I R G D    R
Sbjct: 196 WSEETLLARMRTHNLELERLDGRQRHFAYDWRTLAAINDHYKRYVESEIKRLGEDHISIR 255

Query: 282 IEILGQFPQQEVNNFIPHNY-IEEAMSREA-IDDLYAP-LIMGCDIAGE 327
            +                 + +           D      + G DIAGE
Sbjct: 256 TQYRLLPILGSGYLLNDLQFSLLRGQHTWESSPDPAEGFYVAGLDIAGE 304


>gi|213406229|ref|XP_002173886.1| ATP-dependent 3' to 5' DNA helicase [Schizosaccharomyces japonicus
           yFS275]
 gi|212001933|gb|EEB07593.1| ATP-dependent 3' to 5' DNA helicase [Schizosaccharomyces japonicus
           yFS275]
          Length = 812

 Score = 46.9 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 52/163 (31%), Gaps = 13/163 (7%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              ++   G+GKT + A +M+      P  +I  +A ++  L   + A +          
Sbjct: 148 NVLLALPTGLGKTFIAAVVMMNYYRWFPQSNIAFLAPTKPLLYQQMQACIH--------- 198

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                +S  +  +G     L + +  D + + +T +T + +       P     + +  D
Sbjct: 199 LTGIPESSIVELNGEVKPELRKQLFRDKRVFFVTPQTLNNDIQTEVCDPRL--FVCLVFD 256

Query: 199 EASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
           EA          + +          R   +T+           
Sbjct: 257 EAHRATGLHPYAQVLRSVLRYNTSFRVLALTATPGSNATQIQK 299


>gi|118467025|ref|YP_880745.1| gp2 protein [Mycobacterium avium 104]
 gi|118168312|gb|ABK69209.1| gp2 protein [Mycobacterium avium 104]
          Length = 510

 Score = 46.9 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 76/275 (27%), Gaps = 28/275 (10%)

Query: 79  KCAISAGRGIGKTTLNAWMM-LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
           +  ++     GK+   + +  +WL+S  P   +I  +  +   +    A   + ++  P 
Sbjct: 67  RLIVTMPPRTGKSVQTSQVFPVWLLSRDPDAEVIVKSYGDALAEEHSAA-ARRLIAENPA 125

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
               E+ +       W        M       + T    S    D  V        A   
Sbjct: 126 VVGIELAADKQAVGRWRVAGHRGGMLAGGILSSTTGFGASVLLVDDPV------KGAQEA 179

Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257
           D  +    +  +      T L P    I+       +     +   P   W+   I   +
Sbjct: 180 DSDAYRKRLYAEMRASLMTRLMPGASAIIVLTRWHPDDLAGSLLAEPGSRWRCVNIPAIS 239

Query: 258 VEGIDSGFHEGI-----------------ISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
             G+                           +  + S       LG  P       +   
Sbjct: 240 TAGVPDALGRERSGVAMTSAVGRTAEQFREIKTEVGSRAWAAMYLGT-PSTPEGGLVKAA 298

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEG-GDKTVV 334
           +I+      A       +++G D A  G GD+T +
Sbjct: 299 WIDT-WRLPAAPPGTVKIVVGVDPADSGQGDETGI 332


>gi|67480341|ref|XP_655520.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56472666|gb|EAL50132.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 1804

 Score = 46.9 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 46/192 (23%), Gaps = 18/192 (9%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               + A  G GKT      ML +    P   ++ IA  +  +K  L    S W   L   
Sbjct: 1023 NVIVGAPTGSGKTVAAELCMLKIFRDTPDKKVVYIAPMKALVKEKL----SDWKDKLKTL 1078

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                ++          A      +    + +    R ++++               +  D
Sbjct: 1079 GKNIVELTGDFTPDSAAIAKADIILTTPEKWDGITRLWTKKSYV-------QKVGLIILD 1131

Query: 199  EASGTPDIINKSILGFFTELNP-------NRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY 251
            E     +     I    T                  +          +   +  +    +
Sbjct: 1132 EVHLLGEERGPVIEAIVTRTKQINKKLCIQTRICALTTAIANVDDMMNWIGVDKDSVFNF 1191

Query: 252  QIDTRTVEGIDS 263
                R V  I  
Sbjct: 1192 HSSLRPVPLIAH 1203


>gi|281416465|ref|YP_003347385.1| terminase large subunit [Enterococcus phage phiFL4A]
 gi|270209641|gb|ACZ64180.1| terminase large subunit [Enterococcus phage phiFL4A]
          Length = 418

 Score = 46.9 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 79/281 (28%), Gaps = 34/281 (12%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           + A RG  KTT  A  +  L+   P  +II +  ++T +      E+   ++ +    +F
Sbjct: 48  LLAHRGSFKTTTLAIAIALLMVLFPNKNIIFLRKTDTDV-----VEIILQVAKVLSSKYF 102

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
           +    +L+       L E +  ID+   T +  T        +      H   V  D+  
Sbjct: 103 KTLVFALYGVEL-VLLKETTTEIDTNLKTSSRGTSQLLGMGIYASLTGKHADIVITDDIV 161

Query: 202 GTPDIINKS--------ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253
              D ++++                N    +I T            +           + 
Sbjct: 162 NIKDRVSRAEREKTKLQYQELQNVKNRGGRFINTGTPWHKEDAISKM-------PNVKKF 214

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
           D      ID    + +          A  E+       +  +        +  +      
Sbjct: 215 DCYETGLIDKEQRKALQQAMTPSLFAANYELK---HIADSESLFTAPTYTDNTNLIYNGV 271

Query: 314 LYAPLIMGCDIAGEGGDKTVVVFR----RGNIIEHIFDWSA 350
            +       D A  G D T          G +I +   W  
Sbjct: 272 AH------IDAAYGGDDSTAFTIFKEQKDGTLIGYGKKWQK 306


>gi|145708080|ref|YP_001165255.1| terminase [Ralstonia phage phiRSA1]
 gi|139003869|dbj|BAF52383.1| terminase [Ralstonia phage phiRSA1]
          Length = 593

 Score = 46.9 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/347 (10%), Positives = 80/347 (23%), Gaps = 35/347 (10%)

Query: 39  GIKGKPLEHFSQPHRWQLEFMEA----VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN 94
           G + KP  +   P   Q + +EA    +  +             +  + + R IG T   
Sbjct: 124 GPRSKPERNAISPEE-QTQLLEAFRDSMFDYQRVWYEAGQVERIRNLLKS-RQIGATWYF 181

Query: 95  AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWY 154
           A        T  G + I ++ S+ Q        +             +   L    + ++
Sbjct: 182 AREAFIDALTT-GRNQIFLSASKAQAHVFKQYIIQFAKDAAGIELKGDPMVLPNGATLYF 240

Query: 155 AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF----NDEASGTPDIINKS 210
                ++      +       +     +             +        S         
Sbjct: 241 LGTNARTAQSYHGNLYFDEYFWVPRFQELRKVASGMAIHKHWRQTYFSTPSSLSHEAYPF 300

Query: 211 ILGFFTELNP-NRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI 269
             G            I        +    D        W++       + G  + F    
Sbjct: 301 WSGALFNRGKAKDKQIKL---DLSHAALRDGMRCADGQWRQIVTVEDALRGGCNLFDLDQ 357

Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY-----------APL 318
           +     + D     ++  F   +  +  P   +   M                     P+
Sbjct: 358 LRLEYSELD-FANLLMCVFID-DNASVFPLAMLMRGMVDSWEVWEDFRPFAPRPFGNRPV 415

Query: 319 IMGCDIAGEGGDKTVVVFRRGN-------IIEHIFDWSAKLIQETNQ 358
            +G D  G GGD   +V             +     +     +E   
Sbjct: 416 WVGYDPNGGGGDSAALVVVAPPLVPGGKFRVLERHQFRGIDYEEQAG 462


>gi|311746974|ref|ZP_07720759.1| putative helicase [Algoriphagus sp. PR1]
 gi|126578671|gb|EAZ82835.1| putative helicase [Algoriphagus sp. PR1]
          Length = 1050

 Score = 46.9 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 58/192 (30%), Gaps = 29/192 (15%)

Query: 45  LEHFS-QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS 103
           L +F  +P+ +Q E +E ++      V  +    ++  + A  G GKT ++A+       
Sbjct: 317 LGYFDLKPYTFQEEILEKLE------VERTVHGRYRNLLVAATGTGKTIISAFDFKRFYQ 370

Query: 104 TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
             P   ++ +A+ +  L+  + A                               L     
Sbjct: 371 KNPTAKLLFVAHRKEILQQAMGA-------------------FRGVLKDNNFGELWVDGE 411

Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
             +++  +     +       +     +   +  DE                 +  P   
Sbjct: 412 EPTQYRQVFASVQTLNNRLEGLELSAGYFDFIIVDEVHHIAANSY---RPILHKFTPQIL 468

Query: 224 WIMTSNTRRLNG 235
             +T+   R++G
Sbjct: 469 LGLTATPERMDG 480


>gi|320593001|gb|EFX05410.1| dead deah box DNA helicase [Grosmannia clavigera kw1407]
          Length = 1821

 Score = 46.9 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/262 (9%), Positives = 61/262 (23%), Gaps = 30/262 (11%)

Query: 51   PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
            P RWQ   ++ +D                  + A    GKT ++ + M  ++       +
Sbjct: 767  PDRWQRRVLDTIDA------------RRSLFVVAPTSAGKTFISFYAMKQVLRESDEGVL 814

Query: 111  ICIANSETQLKNTLWAEVSKWLSMLPHR----HWFEMQSLSLHPSGWYAELLEQSMGIDS 166
            + +A ++  +        +++    P+      W          +    ++L     +  
Sbjct: 815  VYVAPTKALVNQVAAEIQARFSKAYPNGGGRSVWSIKTGDYTINNPTGCQVLVTVPQMLQ 874

Query: 167  KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN---RF 223
                        +   ++          +  DE           +      + P      
Sbjct: 875  SLLLSPGSGRGADSKSSW----ARRIRWIIFDEVHSIGQSEEGVVWEQLLLMAPCPMIAL 930

Query: 224  WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283
                 N      W          D +     +R  +     +    +             
Sbjct: 931  SATIGNPNEFRAWLDGTEKAKGRDMEMIVHGSRYSDLRSYFWKPATLR------AETPFR 984

Query: 284  ILGQFPQQEVNNFIPHNYIEEA 305
              G F        IP   ++  
Sbjct: 985  FTG-FGPVPSRWPIPGLEVDGC 1005


>gi|319649444|ref|ZP_08003600.1| TerL protein [Bacillus sp. 2_A_57_CT2]
 gi|317398606|gb|EFV79288.1| TerL protein [Bacillus sp. 2_A_57_CT2]
          Length = 433

 Score = 46.9 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/255 (11%), Positives = 71/255 (27%), Gaps = 27/255 (10%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
                GR   K+++ +  ++         +++C+      L  +++ ++   + ML    
Sbjct: 27  IVAKGGRSSMKSSVISLKLVVDFLEDDIGNVVCLRKVGKYLSTSIYEQIKWAIYMLGVEG 86

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
            F      L              G+D      + +                + MA++ +E
Sbjct: 87  EFYFGKSPLIIRHKVTNTAFYFYGVDDPMKIKSAKIAKG------------YVMALWFEE 134

Query: 200 AS-GTPDIINKSILGFFTEL---NPNRFWIMTSNTRR-LNGWFYDIFNIPL--EDWKRYQ 252
           A+          +   F              + N  R    W  +  +     +D+  + 
Sbjct: 135 AAEFAGVEDIDIVEDTFIRQEIEGKEVKVYFSYNPPRNPYSWINEWLDTKAEDDDYFIHH 194

Query: 253 IDTRT--VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
                     +       I      D D  R    G+        +   ++       +A
Sbjct: 195 STYLDDEKGFLSEQMIRKIEKYKENDEDYWRWMYAGEVIGLGDMVYNMDHF----HEIDA 250

Query: 311 IDDLYAPLIMGCDIA 325
           + +    +++  DIA
Sbjct: 251 LPEDDDLILI--DIA 263


>gi|255038964|ref|YP_003089585.1| type III restriction protein res subunit [Dyadobacter fermentans
           DSM 18053]
 gi|254951720|gb|ACT96420.1| type III restriction protein res subunit [Dyadobacter fermentans
           DSM 18053]
          Length = 995

 Score = 46.9 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 61/212 (28%), Gaps = 21/212 (9%)

Query: 28  FKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRG 87
            ++F      +  +GKP+         QL  + A+  H   N +          +    G
Sbjct: 21  PRSFRFAAQEYDAQGKPIGDRKGLRPPQLGALYAIGSHWTQNSSI-------ATVVMPTG 73

Query: 88  IGKTTLNAWMMLWLISTRPGMSIICIANSE----TQLKNTLWAEVSKWLSMLPHRHWFEM 143
            GKT      ML  ++  P   ++    S+       +  L   + + L++LP      +
Sbjct: 74  TGKTET----MLSALAAFPRGPMVVAVPSKALRNQTTRKFLTFGLLRKLTLLPEEVENPI 129

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
             L     G   +L       D         + +  +              +  DEA   
Sbjct: 130 VGLLSKQPGGENDLAIFE---DCNVVVSAMASLTGGKAKNLASKIANRSGVLIVDEAHHV 186

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
                  +   F+          T+   R +G
Sbjct: 187 AATSWSDLRSAFSGKYT---LQFTATPFREDG 215


>gi|89097884|ref|ZP_01170771.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
 gi|89087386|gb|EAR66500.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
          Length = 485

 Score = 46.9 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 48/209 (22%), Gaps = 23/209 (11%)

Query: 40  IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99
            K      F +P   Q +   A+ +                      G GKTT     +L
Sbjct: 14  EKAVSNMGFEEPTPIQAQ---AIPIGLSGKDMIGQAQT---------GTGKTTAFGIPLL 61

Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159
             I    G+  + +A +          E+++   +   R         +           
Sbjct: 62  EKIDINEGIQGLVLAPTRELAVQVA-EELNRIGQVKGVRTLPIYGGQDISRQI------- 113

Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTE- 217
           +++  D   + I                          DEA         + I    +E 
Sbjct: 114 RALKKDRGPHIIAATPGRLIDHIERKTIRLNKIKLAVLDEADEMLNMGFIEDIERILSEV 173

Query: 218 -LNPNRFWIMTSNTRRLNGWFYDIFNIPL 245
                      +  RR+          P 
Sbjct: 174 PEQRQTLLFSATMPRRIQSLAERFMTEPE 202


>gi|323487253|ref|ZP_08092556.1| hypothetical protein HMPREF9474_04307 [Clostridium symbiosum
           WAL-14163]
 gi|323399479|gb|EGA91874.1| hypothetical protein HMPREF9474_04307 [Clostridium symbiosum
           WAL-14163]
          Length = 550

 Score = 46.9 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/320 (10%), Positives = 75/320 (23%), Gaps = 64/320 (20%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFK-CAISAGRGIGKTTLNAWMMLW--LISTRPGM 108
             WQ   +  +       V+ +   IF+   I  GR  GKT   + ++ +   +    G 
Sbjct: 70  ETWQKSTVSIMF----GIVDEAGIRIFREFLIVIGRKNGKTLFASGIIAYCLFLDGEYGA 125

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            + C+A    Q                    W  +Q      +       +  +   +  
Sbjct: 126 KVFCVAPKLDQADLVYQ------------SFWQTIQKEPELQALIKRRKSDFYVESTNSS 173

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI----INKSILGFFTELNPNRFW 224
                    +            +      DE +  P        + +             
Sbjct: 174 VKKIAFNAKKSD--------GFNPHLTVCDEVASWPGDQGLKQYEVMKSALGARKQPIIL 225

Query: 225 IMTSNTRRLNGWFYD----------------------IFNIPLEDWKRYQIDTRTVEGID 262
            ++++     G + +                           +E W       ++   + 
Sbjct: 226 SISTSGYINEGIYDELVKRATRFLLGDSKEKRLAPFLYMIDDVEKWNDINELRKSNPNLG 285

Query: 263 -----SGFHEGIISRYGLDS--DVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY 315
                    E I    G  S       +      Q     ++    +E+        + +
Sbjct: 286 VSVSVDYLIEEIAIAEGSLSKKAEFMTKY-CNIKQNSTQAWLSAQDVEKCCGNPLRLEDF 344

Query: 316 AP--LIMGCDIAGEGGDKTV 333
                + G D++    D T 
Sbjct: 345 RDSYCVGGIDLSQT-TDLTA 363


>gi|91791668|ref|YP_561319.1| type III restriction enzyme, res subunit [Shewanella denitrificans
           OS217]
 gi|91713670|gb|ABE53596.1| type III restriction enzyme, res subunit [Shewanella denitrificans
           OS217]
          Length = 1051

 Score = 46.9 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 54/199 (27%), Gaps = 29/199 (14%)

Query: 39  GIKGKPLEHFS-QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97
           G       HF  +P   Q E +E +      +V  +    +K  + A  G GKT ++A+ 
Sbjct: 307 GYSDDSAFHFDIKPFAHQREILEQL------DVERTVHQRYKNLVVAATGTGKTLISAFD 360

Query: 98  MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
                   P  + + +A+ +  LK  L               +  +   +     W AE 
Sbjct: 361 FARFYKQHPEANFLFVAHRQEILKQAL-------------SAYRGVLKNNQFGELWVAEH 407

Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217
              S                                 +  DE             G    
Sbjct: 408 KPNSYRHLFASVQSLNLQLLSLPLTVDFY------DYIVIDEVHHIAANSY---RGLLAH 458

Query: 218 LNPNRFWIMTSNTRRLNGW 236
            +P     +T+   R +G 
Sbjct: 459 FSPKILLGLTATPERHDGQ 477


>gi|11499835|ref|NP_071079.1| DEAD-box ATP dependent DNA helicase [Archaeoglobus fulgidus DSM
           4304]
 gi|2648271|gb|AAB89003.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Archaeoglobus
           fulgidus DSM 4304]
          Length = 368

 Score = 46.9 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/266 (11%), Positives = 55/266 (20%), Gaps = 38/266 (14%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR- 105
            F +P   Q E +          V  +             G GKT   A  +L L+  R 
Sbjct: 26  GFEKPTEIQREIIPRFFEGEKDMVGQAQT-----------GSGKTAAFALPILDLVDERS 74

Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
             +  I I  +          E+                   + P             + 
Sbjct: 75  KDVQAIVITPTRELALQV-KDEIESLRGGKKVHVLAVYGGQPIFPQIE---------RLR 124

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELN--PNR 222
                +                          DEA           I             
Sbjct: 125 KGVQIVVGTPGRVIDHLERRTLSLEKVRFFVLDEADRMLDMGFIDDIERILRHAGAERRV 184

Query: 223 FWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI 282
                +    +             D++  ++ ++          E +  R    +   R 
Sbjct: 185 LMFSATMPPEVLRLARRYMR----DYEVVRVHSKITP-------ENVEHRCLKVNPEKRF 233

Query: 283 EILGQFPQQEVNNFIPHNYIEEAMSR 308
           E L +    + NNF    + +     
Sbjct: 234 EHLCRIL--DENNFYGIVFCQTKKET 257


>gi|212545286|ref|XP_002152797.1| DEAD/DEAH box helicase, putative [Penicillium marneffei ATCC 18224]
 gi|210065766|gb|EEA19860.1| DEAD/DEAH box helicase, putative [Penicillium marneffei ATCC 18224]
          Length = 2022

 Score = 46.9 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/155 (12%), Positives = 39/155 (25%), Gaps = 18/155 (11%)

Query: 55   QLEFMEAVDVHCHSNVNNSNPTIF--------KCAISAGRGIGKTTLNAWMMLWLISTRP 106
            Q   +E +        N     +F           + +  G GKT      M W    RP
Sbjct: 1125 QNPILEEIYGQRFQFFNPMQTQLFHTLYHTSANVLLGSPTGSGKTVACELAMWWAFRERP 1184

Query: 107  GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
            G  ++ IA  +  ++  +     +  + +  +   E+   +   +    +        + 
Sbjct: 1185 GSKVVYIAPMKALVRERVQDWRKRITTAMGLK-LVELTGDNTPDTRTIRDADIIITTPEK 1243

Query: 167  KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
                                        V  DE  
Sbjct: 1244 WDGISRSWQTRGYV---------RQVSLVIIDEIH 1269


>gi|319647234|ref|ZP_08001456.1| YqaT protein [Bacillus sp. BT1B_CT2]
 gi|317390581|gb|EFV71386.1| YqaT protein [Bacillus sp. BT1B_CT2]
          Length = 431

 Score = 46.9 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 74/275 (26%), Gaps = 48/275 (17%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
             F+  +  G G  K+   A  ++ L       +++ I       +++ ++     ++ L
Sbjct: 19  QKFQLLV-GGYGSSKSYHIALKLI-LKLLEEKRTVLVIREVYDTHRDSTFSLFEGIINDL 76

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
              H     +  +             +   +    I                   +   +
Sbjct: 77  EIDHIVRCMTSPM------------QVRFPNGSRIIFKGLDKPA-----KLKSINNISII 119

Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-------------- 241
           + +E S       K +LG           I ++N    + W Y  F              
Sbjct: 120 WIEECSEVKYEGFKELLGRLRHPTLPLHMIFSTNPVGEDNWTYKHFFKDDLNNRFVLDDK 179

Query: 242 ------NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN 295
                  I L D   +         +   +   +      D D+ RI   G F    V  
Sbjct: 180 ELYEKRTIVLNDTYYHHSTAEDNLFLPESYVRQLDELKEYDPDLYRIARKGHFGVNGVRV 239

Query: 296 F-----IPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
           F      PH+ + +A+S            +G D  
Sbjct: 240 FPQLEEWPHDEVMQAVSNIDCPIK----RVGMDFG 270


>gi|301022207|ref|ZP_07186122.1| conserved hypothetical protein [Escherichia coli MS 69-1]
 gi|300397620|gb|EFJ81158.1| conserved hypothetical protein [Escherichia coli MS 69-1]
          Length = 553

 Score = 46.9 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/277 (12%), Positives = 61/277 (22%), Gaps = 29/277 (10%)

Query: 7   TDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHC 66
               LE  L+      E V  F  F        +KG       +   WQ      +    
Sbjct: 29  YFSDLENSLYTF--DPEVVERFIAFSRV--CPHVKGAMRGSPIELEPWQQFAFACILGFK 84

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126
                    T     +   R   K+T+ A +  W +    G   I  A         ++ 
Sbjct: 85  VKATGRRKYTSAFIEV--PRKNAKSTVAAILANWFLVMENGQQDIYTAAVSRDQARIVFD 142

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
           +  +             + L    +    +++        K       T     P     
Sbjct: 143 DARQMC--------LLSRPLRKRVNIQAHKVIHPKTNSLLKPLAAKAATIEGTNPS---- 190

Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246
                      DE    PD    S L       P       + +                
Sbjct: 191 -------LAIVDEYHLHPDNGVYSALELGMGARPEGLLFAITTSGSNVVSACKQHY---- 239

Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283
           D+    +D   +          +     +D     I+
Sbjct: 240 DYCCQILDGEEMNESMFVLIYELDDESEVDDPAMWIK 276


>gi|118380585|ref|XP_001023456.1| Type III restriction enzyme, res subunit family protein
           [Tetrahymena thermophila]
 gi|89305223|gb|EAS03211.1| Type III restriction enzyme, res subunit family protein
           [Tetrahymena thermophila SB210]
          Length = 1858

 Score = 46.9 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 41/123 (33%), Gaps = 11/123 (8%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              ++   G+GKT + A ++L      P   I  +A +   +   +  E      ++   
Sbjct: 153 NTLVALPTGLGKTFIAATVILNYYLWFPKGKIFFLAPTRPLVNQQM--ECLSQFELINKN 210

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
             FEM      P         + + +  + +  T +T   +  +        +   V  D
Sbjct: 211 DIFEMTGNYPIPK-------RRDVYLRKRIFFCTPQTLENDLIE--QRYDGYNLSLVIFD 261

Query: 199 EAS 201
           EA 
Sbjct: 262 EAH 264


>gi|51244372|ref|YP_064256.1| helicase [Desulfotalea psychrophila LSv54]
 gi|50875409|emb|CAG35249.1| related to predicted helicase [Desulfotalea psychrophila LSv54]
          Length = 1053

 Score = 46.9 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 57/196 (29%), Gaps = 26/196 (13%)

Query: 40  IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99
               P      P  +QL  +E++     +N        F+  I A  G GKT ++A    
Sbjct: 311 ENSTPFFAEITPRPFQLRILESLTAARQNNS-------FRNLIVAATGTGKTVISAL--- 360

Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159
                      I     +          +                   L    +   L++
Sbjct: 361 ------DYQRYIAGRGKQE-------PLLFVAHRKEILEQAMGCFRTVLRDQNFGELLVD 407

Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
             +  +  H   + ++ + +RP  +      H   V  DEA        + +       +
Sbjct: 408 HRVPTEWNHVFASIQSLNSKRP--WRDFSREHFRFVIIDEAHHGRAASYRCLFDETCI-D 464

Query: 220 PNRFWIMTSNTRRLNG 235
           P     +T+   R++G
Sbjct: 465 PEILLGLTATPERMDG 480


>gi|54022003|ref|YP_116245.1| putative phage terminase [Nocardia farcinica IFM 10152]
 gi|54013511|dbj|BAD54881.1| putative phage terminase large subunit [Nocardia farcinica IFM
           10152]
          Length = 582

 Score = 46.9 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 49/324 (15%), Positives = 86/324 (26%), Gaps = 60/324 (18%)

Query: 51  PHRWQLEFMEAVD---VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL--ISTR 105
           P  WQ+ ++ A     VH   +       I    +   R  GK+TL   + ++L      
Sbjct: 87  PDSWQVAYILAPAFGWVHLDEDFGIYVRIIRTLYVELPRKNGKSTLAGGIGIYLTAADGE 146

Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
            G  +I  A    Q    ++A +       P        +L  H + + A+++       
Sbjct: 147 EGAQVIAAATRLDQA-QFVFAPIKLLAEKSP--------ALRKHVTPYKAKIVHNR---- 193

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPNRFW 224
                    +Y +   +     H         DE      + + ++I             
Sbjct: 194 -------TASYFQPVANAGDAQHGADLHGGIVDELHLHKTNELVEAIETGTGSRTQPLIV 246

Query: 225 IMTS-------NT-RRLNGWFYDIFNIPLEDWKRYQIDT---RTVEGIDSGFHEGII--- 270
            +T+           R  G    +    L+D   Y +        EG D    E      
Sbjct: 247 FITTADDSRKETPYDRKRGLVEQLARGVLKDATTYGVIWAADENAEGFDPYSEEAQRAAN 306

Query: 271 -------------------SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311
                               +   D    R   LG   +Q V       +   A   +  
Sbjct: 307 PGFGISPTRAFLRQAAVKAQQSPADDASYRRLHLGIRTKQAVKYLDIEAWDRNASIVDEE 366

Query: 312 DDLYAPLIMGCDIAGEGGDKTVVV 335
                    G D+A    D T + 
Sbjct: 367 RLRGRACYGGLDLAAT-SDLTALA 389


>gi|270055225|gb|ACZ58718.1| hypothetical protein SAP029A_017 [Staphylococcus aureus]
          Length = 740

 Score = 46.5 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 40/263 (15%), Positives = 81/263 (30%), Gaps = 10/263 (3%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTT-LNAWMMLWLISTRPGMSII 111
            +Q + ++ +           +  + +  I A  G GKT  L +W+  ++IST   +  +
Sbjct: 6   EFQEKMVDKLLRF-----TAPDYKVNELLIKAPTGSGKTICLLSWINDYIISTHDDVVFV 60

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
                  +L+     +   + ++        +       +  +      +     K    
Sbjct: 61  WFTPGAGELEEQSKDKAKGFTNIKSQSVDEALNQGFEKETVTFINYERVTGK-KKKAMMT 119

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
                + E           H + V  DEA        + I+  F      R      N  
Sbjct: 120 DSEKDNLEDKINEAFRKGYHFILVI-DEAHRNDTKKARDIISKFKASKIVRVSATIENPN 178

Query: 232 RLNG-WFYDIFNIPLEDWKRYQIDTRTVEGIDSG-FHEGIISRYGLDSDVARIEILGQFP 289
             +   FY+I    + +           EGID     E         +++ R EIL  + 
Sbjct: 179 NPDKIEFYEIDENDVINSGLITKSVIVNEGIDIDINVENEFDLLFNAAEIKRKEILNAYQ 238

Query: 290 QQEVNNFIPHNYIEEAMSREAID 312
            + +NN  P   ++     +  D
Sbjct: 239 DKNINNINPLVLVQLPDKTDNED 261


>gi|260557981|ref|ZP_05830193.1| phage terminase large subunit [Acinetobacter baumannii ATCC 19606]
 gi|260408491|gb|EEX01797.1| phage terminase large subunit [Acinetobacter baumannii ATCC 19606]
          Length = 529

 Score = 46.5 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 11/82 (13%)

Query: 269 IISRYGLDSDVARIEILGQF---PQQEVNNFIPHNYIEEAMSREAIDDLYAPLI------ 319
           + +   L   +    + G F    + +    IP  ++E A +R    +    L       
Sbjct: 274 MSTLQALPEPLRSQMLYGDFGAGIEDDPWQVIPTEWVEAAQARWKPLEDMRILHRGDFKM 333

Query: 320 --MGCDIAGEGGDKTVVVFRRG 339
              G D+A  GGD T+   R G
Sbjct: 334 DSYGLDVARGGGDNTIGFARYG 355


>gi|296123845|ref|YP_003631623.1| Phage terminase-like protein protein large subunit-like protein
           [Planctomyces limnophilus DSM 3776]
 gi|296016185|gb|ADG69424.1| Phage terminase-like protein protein large subunit-like protein
           [Planctomyces limnophilus DSM 3776]
          Length = 495

 Score = 46.5 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 51/372 (13%), Positives = 95/372 (25%), Gaps = 56/372 (15%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           M RL + D+  +  L          L           W      L   S+P   Q +   
Sbjct: 1   MVRLSAADRTRQATLESWQRADFAALDPA--------WRK----LAFGSRPSLSQADATT 48

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
           +   H         P          RG  KTT  A    W+++          A ++ + 
Sbjct: 49  SNAPHVLRRAYLERP----------RGHSKTTDIALSCAWILAFAQEPVTGIAAAADREQ 98

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
              L   +++ + + P            H  G      E+ +   ++         S + 
Sbjct: 99  AQLLLQAIARLVRLNP------------HLLGHLQVQQERVIHTHTRSRLDV---ISSDV 143

Query: 181 PDTFVGPHNTHGMAVFNDEASGTP-DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
             ++          V  DE        +  S++   +   P+    + SN      W + 
Sbjct: 144 ASSWGLL----PDFVICDELCHWTKPDLWHSLVSA-SAKKPHTLLAVMSNAGVGRTWQWQ 198

Query: 240 IFNIPL--EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV-----ARIEILGQFPQQE 292
           +        +W    +       I                          +  G F   +
Sbjct: 199 VREAARTSPEWYFSSLHGPQASWITPETLAEQQRLLPATVFARLWLNQWQQAEGDFVTLD 258

Query: 293 VNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
                    I+ +++R+         +   D A +  D TV V         I D    +
Sbjct: 259 E----ARACIDPSLARKEHGSPGIHYVAAIDYAEK-HDWTVAVILHAEGDRLIVD-RMDV 312

Query: 353 IQETNQEGCPVG 364
                    PV 
Sbjct: 313 AIPQPGRPTPVA 324


>gi|316934039|ref|YP_004109021.1| UvrD/REP helicase [Rhodopseudomonas palustris DX-1]
 gi|315601753|gb|ADU44288.1| UvrD/REP helicase [Rhodopseudomonas palustris DX-1]
          Length = 687

 Score = 46.5 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/274 (12%), Positives = 73/274 (26%), Gaps = 18/274 (6%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTR-PGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
             + AG G GKT   A  +  L+        I+ +  S           V +    +   
Sbjct: 31  LLVIAGAGSGKTNTLAHRVAHLVVGGADPYRILLMTFSRRAAAEMT-RRVERIARKVLGD 89

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               +         ++            +       T  +      +     H +     
Sbjct: 90  RASALSGGLHWAGTFHGIGARLLRDYAERIGLDPGFTIHDREDSADLMNLVRHDLGFSKT 149

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
           EA         SI             ++ +N     GW         E  + +       
Sbjct: 150 EARFPAKATCLSIYSRCVNAGQPLDVVLGANYPWCAGW-------AAELKQLFAAYVEAK 202

Query: 259 EGIDSGFHEGIISRYG--LDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA 316
           +  +   ++ ++  +   ++      EI G+F    V+ +   N ++  +      D   
Sbjct: 203 QRHNVLDYDDLLLYWAQVMEEPAFAQEIGGRFDHVLVDEYQDTNALQARVLLALKPDGAG 262

Query: 317 PLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350
             ++       G D   +   R   + +I D+  
Sbjct: 263 LTVV-------GDDAQAIYSFRAATVRNILDFPK 289


>gi|15801322|ref|NP_287339.1| putative terminase of prophage CP-933C [Escherichia coli O157:H7
           EDL933]
 gi|12514776|gb|AAG55951.1|AE005328_9 putative terminase of prophage CP-933C [Escherichia coli O157:H7
           str. EDL933]
          Length = 509

 Score = 46.5 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 48/232 (20%), Gaps = 25/232 (10%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             WQ      +             T     +   R   K+T  A +  W +    G   I
Sbjct: 26  EPWQQFAFACILGFKVKATGRRKYTSAFIEV--PRKNAKSTTAAILANWFLIMENGQQDI 83

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A         ++ +  +             + L    +    +++        K    
Sbjct: 84  YTAAVSRDQARIVFDDARQMC--------LLSRPLRRRVNIQAHKVIHPKSNSLLKPLAA 135

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
              T     P                DE    PD    S L       P       + + 
Sbjct: 136 KAATIEGTNPS-----------LAIVDEYHLHPDNGVYSALELGMGARPEGLLFAITTSG 184

Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283
                          D+    +D   V          +     +D     I+
Sbjct: 185 SNVVSACKQHY----DYCCQILDGEEVNESMFVLIYELDDESEVDDPAMWIK 232


>gi|288959320|ref|YP_003449661.1| hypothetical protein AZL_024790 [Azospirillum sp. B510]
 gi|288911628|dbj|BAI73117.1| hypothetical protein AZL_024790 [Azospirillum sp. B510]
          Length = 504

 Score = 46.5 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 38/139 (27%), Gaps = 6/139 (4%)

Query: 42  GKPLEHFSQPHRWQLEF--MEAVDVHCHS---NVNNSNPTIFKCAISAGRGIGKTTLNAW 96
            +  + F+   R   +   +     H         +      +  + A RG GK+TL   
Sbjct: 2   DREDDSFTGFVRGWNDMVELRTPAHHARMAGWLERHMAGDNRRMLLMAFRGSGKSTLVGL 61

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
              WL+   P   ++ +A         +   V + L   P     +  +           
Sbjct: 62  FAAWLLRRDPNRRLLVLAADMRLAMKMV-RNVKRILERHPGCGDLKPPARERDQWAADRF 120

Query: 157 LLEQSMGIDSKHYTITCRT 175
            + + M +           
Sbjct: 121 TVLRPMELRDPSMAAAGIG 139


>gi|299132403|ref|ZP_07025598.1| type III restriction protein res subunit [Afipia sp. 1NLS2]
 gi|298592540|gb|EFI52740.1| type III restriction protein res subunit [Afipia sp. 1NLS2]
          Length = 1097

 Score = 46.5 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 55/219 (25%), Gaps = 30/219 (13%)

Query: 38  WGIKGKPLEHFSQPHR----WQLEFMEAVDVHCHSNVNNSNPTIFKC-AISA----GR-- 86
           W   G        P +    W+  F  AV+     +     P I    AI+A    GR  
Sbjct: 100 WDRLGALETWADSPEKVLESWRNRFTFAVEDLDQGHPGLRLPQIGALHAIAAHFSVGREF 159

Query: 87  ---------GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
                    G GKT      ML  +  R    I+ +A S   L+N +  + S    +   
Sbjct: 160 EPATVVLPTGTGKTET----MLADLVYRRERKILVLAPSLI-LRNQIGVKFSTLGVLPAA 214

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN--THGMAV 195
                  +                         +   T    +       H        +
Sbjct: 215 GAIPVELARPFVAKITKGISTVGHAEAIVNASNVIIATPDILKASAPDALHRLLEGCSIL 274

Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
             DEA          +   F      +    T+   R +
Sbjct: 275 VVDEAHHITAATWSEVRDRFA---AKKIIQFTATPFRRD 310


>gi|315634882|ref|ZP_07890164.1| phage D3 terminase family protein [Aggregatibacter segnis ATCC
           33393]
 gi|315476434|gb|EFU67184.1| phage D3 terminase family protein [Aggregatibacter segnis ATCC
           33393]
          Length = 542

 Score = 46.5 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/279 (10%), Positives = 60/279 (21%), Gaps = 35/279 (12%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ      +     +N            ++  R   K+T+ A +  W +    G   I 
Sbjct: 58  DWQTFLFANLLGFKRTNTGLRKYRSAYIQVA--RKNAKSTVAAVLANWFLLMESGQQDIY 115

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            A         ++ +  +   + P         L    +    +L+        +     
Sbjct: 116 TAAVSRDQARIVFDDARQMCLLSP--------PLRKRLNIQQHKLINPKSNSLMRPLAAK 167

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232
             T     P                DE     D    S L       P       +    
Sbjct: 168 SSTIEGTNPS-----------LAIVDEYHLHTDNSVYSALELGQGARPEGLLFAITTAGS 216

Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-----LGQ 287
                         D+    ++              +     +D+    ++         
Sbjct: 217 NVISACKQHY----DYCAQILEGNEQNDSLFVLIFELDEESEIDNPENWVKANPNIGKSI 272

Query: 288 FPQQEVNNF-----IPHNYIEEAMSREAIDDLYAPLIMG 321
                 N       IP  ++E    R  +        +G
Sbjct: 273 PYLDFENTIKKARGIPSEWVEMLTKRFNVWCQGTTPWLG 311


>gi|228928749|ref|ZP_04091784.1| Terminase [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228830904|gb|EEM76506.1| Terminase [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
          Length = 574

 Score = 46.5 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 55/189 (29%), Gaps = 26/189 (13%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL--ISTRPGMS 109
             WQ  F+ A     H              ++  R  GK+TL++ + L+L       G  
Sbjct: 108 ELWQQAFLAATFGFVHKIDGTRKYREAFLVVA--RKNGKSTLSSGICLYLQVADGEGGSE 165

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           +  +A  E Q K  +W+E  + +   P        +LS        EL         K  
Sbjct: 166 VYAVATKEQQAK-IVWSESKRMVKKSP--------ALSKRIKTLVKELTAGFNDSVLKPV 216

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK--SILGFFTELNPNRFWIMT 227
                T            H         DE     D       + G      P    I T
Sbjct: 217 GSDSDTLDGLN------VHGAS-----LDEIHAWKDKNLYDVIVDGTSAREQPLILMITT 265

Query: 228 SNTRRLNGW 236
           + T R + +
Sbjct: 266 AGTVRESVY 274


>gi|328857391|gb|EGG06508.1| hypothetical protein MELLADRAFT_36161 [Melampsora larici-populina
           98AG31]
          Length = 824

 Score = 46.5 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 45/147 (30%), Gaps = 7/147 (4%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA-EVSKWLSMLPHRHWFEMQS 145
           G+GKT     ++L       G   + IA +   +    W  E+ K+   L    W     
Sbjct: 237 GMGKTIQTISLILSDRKAGDGKQTLVIAPT---VAIIQWRNEIEKFTKGLKVNVWHGGNR 293

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYS--EERPDTFVGPHNTHGMAVFNDEASGT 203
            +   +    +++  S  +    +      Y    E        H+ H   V  DEA   
Sbjct: 294 STDKKTMKSYDIVLTSYAVLESSFRRQNSGYRKFGELRKEASLLHSIHWHRVILDEAHNI 353

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNT 230
            D    +  G F        W ++   
Sbjct: 354 KDRSCNTAKGAFELQ-ATFKWCLSGTP 379


>gi|270010010|gb|EFA06458.1| hypothetical protein TcasGA2_TC009341 [Tribolium castaneum]
          Length = 1313

 Score = 46.5 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/238 (9%), Positives = 61/238 (25%), Gaps = 15/238 (6%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              +S   G+GKT + A +M       P   +I +A +   +K  +        +++   
Sbjct: 57  NTLVSLPTGLGKTFIAAVVMYNFYRWYPHDKVIFMAPTRPLVKQQM----DACYNIMAIP 112

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                +           E+ +                   +     +         +  D
Sbjct: 113 QEVTAELTGTKIQQSRTEIWQ-------NKRVFFITPQVLQNDLNIIVELGPKIKCLVFD 165

Query: 199 EASGTPDIIN--KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256
           EA          + +     E    R   +++     +    D+           +  + 
Sbjct: 166 EAHRAKGNHAYCEVVRKLLPENKLFRVLALSATPGNSSKDVLDVMRNL--LIAHLEFRSE 223

Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314
               +     E  +    +       +I  ++ Q  V+     + ++  +  +     
Sbjct: 224 ESPDVKPYVFERALETVVVPLGEKLQQIRDKYIQGNVSIIQIMDDLQAYLGPDPEVQP 281


>gi|20094271|ref|NP_614118.1| helicase [Methanopyrus kandleri AV19]
 gi|19887311|gb|AAM02048.1| Archaea-specific Superfamily II helicase [Methanopyrus kandleri
           AV19]
          Length = 818

 Score = 46.5 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/293 (11%), Positives = 60/293 (20%), Gaps = 27/293 (9%)

Query: 43  KPLEHFSQPHRWQLEFME----AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98
            PL     P   +          +       V           + +  G GKT L A + 
Sbjct: 188 LPLTELDIPEELRRVLERMGYQELTPVQTKCVERGLLEGRNLLVVSPTGSGKT-LVAELA 246

Query: 99  LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
                 R G  ++ +              + K+   L      ++ +  L          
Sbjct: 247 GLTEVLREGRKMVYLVPLVALANQKHREFMEKYGRPLGIGVRLQVGAARLKEFSGPERGP 306

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG----- 213
                 D+     T   +        V P       V  DE     D     + G     
Sbjct: 307 SP---RDADIIVGTYEGFDLLLRTGAVDP--DDIGVVVIDEVHTLADERGPRLDGLVCRL 361

Query: 214 -FFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISR 272
              T            N   L  +      +        +      +     +       
Sbjct: 362 KTLTGAQLLGLSATVGNPEELAEYLDAEPIVHNRRPVPLEYHLVINQDRRQKWDRIAR-- 419

Query: 273 YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
                 +   E   ++        I   Y      R A          G D+A
Sbjct: 420 ------LVESEWETEYSTGYRGQTIVFTYSRRNTHRLADLLNE---RTGLDVA 463


>gi|229123217|ref|ZP_04252422.1| Terminase [Bacillus cereus 95/8201]
 gi|228660232|gb|EEL15867.1| Terminase [Bacillus cereus 95/8201]
          Length = 574

 Score = 46.5 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 55/189 (29%), Gaps = 26/189 (13%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL--ISTRPGMS 109
             WQ  F+ A     H              ++  R  GK+TL++ + L+L       G  
Sbjct: 108 ELWQQAFLAATFGFVHKIDGTRKYREAFLVVA--RKNGKSTLSSGICLYLQVADGEGGSE 165

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           +  +A  E Q K  +W+E  + +   P        +LS        EL         K  
Sbjct: 166 VYAVATKEQQAK-IVWSESKRMVKKSP--------ALSKRIKTLVKELTAGFNDSVLKPV 216

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK--SILGFFTELNPNRFWIMT 227
                T            H         DE     D       + G      P    I T
Sbjct: 217 GSDSDTLDGLN------VHGAS-----LDEIHAWKDKNLYDVIVDGTSAREQPLILMITT 265

Query: 228 SNTRRLNGW 236
           + T R + +
Sbjct: 266 AGTVRESVY 274


>gi|194450112|ref|YP_002047236.1| hypothetical protein SeHA_C3493 [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194408416|gb|ACF68635.1| putative conserved hypothetical protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
          Length = 591

 Score = 46.5 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 42/351 (11%), Positives = 78/351 (22%), Gaps = 76/351 (21%)

Query: 38  WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97
           +               W  E +     H   N+           I   R IG T   A+ 
Sbjct: 126 YKKNDISSLTQEDFDTWAEEHLFEYQKHLRRNIGQLVRN-----ILKSRQIGATWYFAFE 180

Query: 98  MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
                       I   A+          AEV +   +     +F +              
Sbjct: 181 AFENAVMTGDPQIFLSASKAQ-------AEVFRSYIVNIAEQYFGITLTGNPIRLSNGAE 233

Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFF 215
           L       +     T ++YS                 ++ DE    P+   +N+      
Sbjct: 234 LRFLSTNKN-----TAQSYSGH---------------LYCDEYFWVPNFTKLNEVASAMA 273

Query: 216 TELNPNRFWIMTSNTRRLNG-----WFYDIFNIPLEDWKRYQIDTRT--------VEGID 262
           T           S            W  D +    +     +  T               
Sbjct: 274 THDKWRT--TYFSTPSAKTHQAYPFWTGDEWKQGSKKRTAIKFPTFDELRDGGRVCPDGQ 331

Query: 263 SGFHEGIISRYGLDSDVARIE--------------ILGQFPQQEVNNFIPHNYIEEA--- 305
             +   +        ++A IE               +  F     ++    + +E     
Sbjct: 332 WRYVITMEDAIAGGFNLANIEKLRNRYNTATFNMLYMCVFVD-SKDSVFSFSDLEACGVE 390

Query: 306 --MSREAIDDLYAPL----IMG-CDIAGEGGDKTVVVFRRGNIIEHIFDWS 349
               ++   D   P     + G  D A  G D +  V      +  +  + 
Sbjct: 391 VDTWQDHNPDAARPFGDRPVWGGFDPARSG-DLSCFVIV-APPMFAVEKFR 439


>gi|291563675|emb|CBL42491.1| phage uncharacterized protein (putative large terminase),
           C-terminal domain [butyrate-producing bacterium SS3/4]
          Length = 544

 Score = 46.5 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 48/347 (13%), Positives = 101/347 (29%), Gaps = 39/347 (11%)

Query: 9   QKLEQELHEMLMHAECVL------SFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAV 62
            + ++EL  + M  + VL       F+++++    W  +  P + F  P R      E +
Sbjct: 58  SETDKELRSLFMLHKKVLLAAAPFDFESYLLYV-EWERE--PDKKFYVPRR------EVM 108

Query: 63  DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN 122
                +  +  +  +    IS   G GK+TL  + + W++   P    +  A+S   L  
Sbjct: 109 HPVVQAMQDLIDDRLDLLTISMPPGTGKSTLGIFFLSWVMGRFPDSQSLASAHSG-MLTR 167

Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182
           + +  V + ++   +        + +  +    E ++          T      S     
Sbjct: 168 SFYDGVYQIITDSEYLWADVFPGVKMAATNSKEETIDLHKKHRFSTLTCRAINASLTGAT 227

Query: 183 TFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPN-RFWIMTSNTRRLNGWFYD 239
                     +    +EA      D +  +               I  +    ++     
Sbjct: 228 RCDKILYADDLCSGIEEAMSKERLDKLWSAYTNDLKSRKKEGAKEIHIATRWSVHDVIGR 287

Query: 240 IFNIPLEDWKRY-------------QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
           + N    D +                 +     G    + E + +     S  A      
Sbjct: 288 LENQYGGDSRAKFIVLPALDADGESNFNYTYGVGFSRHYFEDMRNNLDEASFKALFMNQ- 346

Query: 287 QFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMG-CDIAGEGGDKT 332
             P +        + +       A  D  A  I+G CD   +G D  
Sbjct: 347 --PIEREGLLYDVDELRRYFELPAE-DPDA--IIGICDTKDKGSDYA 388


>gi|224006195|ref|XP_002292058.1| helicase [Thalassiosira pseudonana CCMP1335]
 gi|220972577|gb|EED90909.1| helicase [Thalassiosira pseudonana CCMP1335]
          Length = 1581

 Score = 46.5 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 19/187 (10%)

Query: 43   KPLEHFSQPHRWQL-----EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97
             P+    +P   QL     +    +       + +S+       + A  G GKTT+    
Sbjct: 909  LPVRSLDEPRYEQLYANRFDVFNPIQTQLFHILYHSDVP---VLLGAPTGSGKTTVAELA 965

Query: 98   MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML--PHRHWFEMQSLSLHPSGWYA 155
            +L + +  P    + IA  ++  +  L     +W   L  P  +W  ++          A
Sbjct: 966  LLRMKTQTPNGKCVYIAPLKSLARERL----KEWSKRLGAPPLNWKVLELSGDTSHDSRA 1021

Query: 156  ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN-----THGMAVFNDEASGTPDIINKS 210
                  +    + + +  R +     D      N          +  DE     +     
Sbjct: 1022 LNNSDVLICTPEKWDLISRGWRGVSGDFVSNASNGKKFVKEVGLLIIDEIHLLGEERGAV 1081

Query: 211  ILGFFTE 217
            +    + 
Sbjct: 1082 LEAIISR 1088


>gi|164429395|ref|XP_957041.2| hypothetical protein NCU04472 [Neurospora crassa OR74A]
 gi|157073461|gb|EAA27805.2| predicted protein [Neurospora crassa OR74A]
          Length = 1535

 Score = 46.5 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/289 (11%), Positives = 77/289 (26%), Gaps = 37/289 (12%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           +P  WQ + ++A+D +                + A    GKT ++ + M  ++       
Sbjct: 663 EPDAWQRKVLDAIDENKS------------LLVIAPTSAGKTFISFYAMRKVLEANNDDV 710

Query: 110 IICIANSETQLKNT---LWAEVSKWLSM-------LPHRHWFEMQSLSLHPSGWYAELLE 159
           ++ IA ++  +      + A  SK           L          + L       ++ +
Sbjct: 711 LVYIAPTKALVNQIAAEIQARFSKQYGQEARSRDTLNDASLEPRDCIVLWKHMTKHQIGQ 770

Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
             +        +      +     +             D     P+     +        
Sbjct: 771 YQVPTSLDPKKMLPSLVKKSDVTKWESALKDVLADWMLD-----PNSPFDELRNDLRGER 825

Query: 220 PNRFWIMTS-NTRRLN-----GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRY 273
            +        N  R+         Y+        +K++             + +   S  
Sbjct: 826 SHGALPAIIFNYDRVGCETVLRELYETLKSAEAAYKQHDSKWLKKLAGFEEWKKRRESAK 885

Query: 274 GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR----EAIDDLYAPL 318
             D+ + + +  G   + +       +   +A +R        D  APL
Sbjct: 886 TKDTKMKQTKKTGLRNEDDDGAMSKGDRARDAANRELSVWDSFDPEAPL 934


>gi|325660662|ref|ZP_08149293.1| hypothetical protein HMPREF0490_00024 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325473071|gb|EGC76278.1| hypothetical protein HMPREF0490_00024 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 777

 Score = 46.5 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 46/180 (25%), Gaps = 16/180 (8%)

Query: 38  WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNS---NPTIFKCAISAGRGIGKTTLN 94
           W +  + +E      R + + +  +                 I +  +    G GKT   
Sbjct: 221 WEVLSEKVEEKCGEFRERKDPLSKLRCDISERCKCYAERETEICRMIV--PTGGGKTISA 278

Query: 95  AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWY 154
               +          I  IA      +  L     +W  ++   +  E  S  +      
Sbjct: 279 LRFAIHYCKKHGKERIFYIAPF----RTILEQNCEEWKRIVGEEYVLEHHSDMIASFKTE 334

Query: 155 AELLEQSMGIDSKHYTITCRT----YSEERPDTFVGPHNTHGMA---VFNDEASGTPDII 207
            E+ E  +  D     I   T     +    D        H +    +  DE    P   
Sbjct: 335 EEMAEYELRADKWDMPIIATTLVQFMNTFFSDRMDSVRRMHRLCNSVIIIDEVQSIPAEC 394


>gi|119716507|ref|YP_923472.1| type III restriction enzyme, res subunit [Nocardioides sp. JS614]
 gi|119537168|gb|ABL81785.1| type III restriction enzyme, res subunit [Nocardioides sp. JS614]
          Length = 558

 Score = 46.5 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 44/364 (12%), Positives = 93/364 (25%), Gaps = 53/364 (14%)

Query: 38  WGIKGKPLEHFSQP---------HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGI 88
           W        +   P           +QLE  E +                +  +    G+
Sbjct: 117 WAGPTLEAIYAKMPARVPSKYELRPYQLEAAERIQQDLEDTN--------RALLVLATGL 168

Query: 89  GKTTLNAWMMLWLISTRPGMSIICIANSE---TQLKNTLWAEVSKWLSMLPHRHWFEMQ- 144
           GKT +   ++   + + P   I+ +A+ +    QL+  LW  + K +             
Sbjct: 169 GKTVVGGEVIRRHLESHPDARILVVAHMKELVEQLEKALWRHLDKSVPTQVLTGDTRPTS 228

Query: 145 ------SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN- 197
                 +      G        S+ +  + + +       +  D           A    
Sbjct: 229 FEGVTVATIDSVLGLVRTDWRPSLIMIDETHHVGETGMFAQLLDECQDARQFGVTATPWR 288

Query: 198 -DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI--D 254
            D+   T      S      E   + +         ++   +D      E     +    
Sbjct: 289 GDKFDITSRFGQPSYSLGIAEGMADGYLAQVDYRMYVDNLDWDFVRHASEHGYSIKELNK 348

Query: 255 TRTVEGIDSGFHEGIISRYGL--DSDVA-------RIEILGQFPQQEVNNFIPHNYIEEA 305
              +   D    +     +    D             E +         ++   +Y+   
Sbjct: 349 ALFLPQRDEEIVDEFRQAWREIRDPRAIVFCQTIEHAERMATLLAGADQSWRRASYLHSG 408

Query: 306 MSREAIDD-------LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF-DWSAKLIQETN 357
           +SR+              P+I   D+  EG D         N+I  +    S ++  +  
Sbjct: 409 LSRQQRQILLNAFRLGRVPIITCVDVFNEGVD-----VPDVNLIAFLRVTHSRRIFVQQL 463

Query: 358 QEGC 361
             G 
Sbjct: 464 GRGL 467


>gi|323190958|gb|EFZ76225.1| terminase, ATPase subunit [Escherichia coli RN587/1]
          Length = 591

 Score = 46.5 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 36/330 (10%), Positives = 77/330 (23%), Gaps = 56/330 (16%)

Query: 49  SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108
                W  E +     H  +N+           I   R IG T   A+            
Sbjct: 137 EDFDAWAEEHLFEYQKHLRNNIGQLVRN-----ILKSRQIGATWYFAFEAFENAVMTGDP 191

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            I   A+          AEV +   +     +F +              +  S G + + 
Sbjct: 192 QIFLSASKAQ-------AEVFRSYIVNIAEQYFGITLT--------GNPIRLSNGAELRF 236

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
            +    T        +   +         +E +      +K    +F+  +         
Sbjct: 237 LSTNKNTAQSYSGHLYCDEYFWVPNFAKLNEVASAMATHDKWRTTYFSTPSAKTHQAY-- 294

Query: 229 NTRRLNGWFYDIFNIPL-----EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283
                 G  +   +          +   +   R        +   +        ++A IE
Sbjct: 295 --PFWTGDEWKQGSKKRAAIKFPSFNEMRDGGRLCPDGQWRYVITMEDAIAGGFNLANIE 352

Query: 284 --------------ILGQFPQQEVNNFIPHNYIEEA-----MSREAIDDLYAPL----IM 320
                          +  F     ++    + +E         ++   D   P     + 
Sbjct: 353 KLRNRYNDATFNMLYMCVFVD-SKDSVFSFSDLEACGVEIDTWQDHNPDAARPFGDRPVW 411

Query: 321 G-CDIAGEGGDKTVVVFRRGNIIEHIFDWS 349
           G  D A  G D +         +  +  + 
Sbjct: 412 GGFDPARSG-DLSCF-VIIAPPMLAVEKFR 439


>gi|323477799|gb|ADX83037.1| ATPase of unknown function [Sulfolobus islandicus HVE10/4]
          Length = 726

 Score = 46.5 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 38/137 (27%), Gaps = 21/137 (15%)

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
           P      ++A RG GK+      + +L++     +I+  + +    +   +  V K L  
Sbjct: 213 PGKRVLVVTAARGRGKSASIGLFLSYLMTEEKFGNILVTSPTYYSSQEI-FNFVIKGLDA 271

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
           L  ++                                     S  +  +     N  G  
Sbjct: 272 LNVKYKLTTSKD--------------------GKIMKITTGESRVKWVSPDLARNEEGDL 311

Query: 195 VFNDEASGTPDIINKSI 211
           +  DEA+         I
Sbjct: 312 IVVDEAAAIGMEFLDYI 328


>gi|284446123|gb|ADB87625.1| conserved hypothetical protein [Sulfolobus islandicus L.D.8.5]
          Length = 742

 Score = 46.5 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 38/137 (27%), Gaps = 21/137 (15%)

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
           P      ++A RG GK+      + +L++     +I+  + +    +   +  V K L  
Sbjct: 229 PGKRVLVVTAARGRGKSASIGLFLSYLMTEEKFGNILVTSPTYYSSQEI-FNFVIKGLDA 287

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
           L  ++                                     S  +  +     N  G  
Sbjct: 288 LNVKYKLTTSKD--------------------GKIMKITTGESRVKWVSPDLARNEEGDL 327

Query: 195 VFNDEASGTPDIINKSI 211
           +  DEA+         I
Sbjct: 328 IVVDEAAAIGMEFLDYI 344


>gi|238620206|ref|YP_002915032.1| protein of unknown function DUF699 ATPase putative [Sulfolobus
           islandicus M.16.4]
 gi|238381276|gb|ACR42364.1| protein of unknown function DUF699 ATPase putative [Sulfolobus
           islandicus M.16.4]
          Length = 742

 Score = 46.5 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 38/137 (27%), Gaps = 21/137 (15%)

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
           P      ++A RG GK+      + +L++     +I+  + +    +   +  V K L  
Sbjct: 229 PGKRVLVVTAARGRGKSASIGLFLSYLMTEEKFGNILVTSPTYYSSQEI-FNFVIKGLDA 287

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
           L  ++                                     S  +  +     N  G  
Sbjct: 288 LNVKYKLTTSKD--------------------GKIMKITTGESRVKWVSPDLARNEEGDL 327

Query: 195 VFNDEASGTPDIINKSI 211
           +  DEA+         I
Sbjct: 328 IVVDEAAAIGMEFLDYI 344


>gi|229581726|ref|YP_002840125.1| protein of unknown function DUF699 ATPase putative [Sulfolobus
           islandicus Y.N.15.51]
 gi|228012442|gb|ACP48203.1| protein of unknown function DUF699 ATPase putative [Sulfolobus
           islandicus Y.N.15.51]
          Length = 742

 Score = 46.5 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 38/137 (27%), Gaps = 21/137 (15%)

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
           P      ++A RG GK+      + +L++     +I+  + +    +   +  V K L  
Sbjct: 229 PGKRVLVVTAARGRGKSASIGLFLSYLMTEEKFGNILVTSPTYYSSQEI-FNFVIKGLDA 287

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
           L  ++                                     S  +  +     N  G  
Sbjct: 288 LNVKYKLTTSKD--------------------GKIMKITTGESRVKWVSPDLARNEEGDL 327

Query: 195 VFNDEASGTPDIINKSI 211
           +  DEA+         I
Sbjct: 328 IVVDEAAAIGMEFLDYI 344


>gi|229579609|ref|YP_002838008.1| protein of unknown function DUF699 ATPase [Sulfolobus islandicus
           Y.G.57.14]
 gi|317412141|sp|C3N792|TMCA_SULIY RecName: Full=Putative tRNA(Met) cytidine acetyltransferase
 gi|228010324|gb|ACP46086.1| protein of unknown function DUF699 ATPase putative [Sulfolobus
           islandicus Y.G.57.14]
          Length = 743

 Score = 46.5 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 38/137 (27%), Gaps = 21/137 (15%)

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
           P      ++A RG GK+      + +L++     +I+  + +    +   +  V K L  
Sbjct: 229 PGKRVLVVTAARGRGKSASIGLFLSYLMTEEKFGNILVTSPTYYSSQEI-FNFVIKGLDA 287

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
           L  ++                                     S  +  +     N  G  
Sbjct: 288 LNVKYKLTTSKD--------------------GKIMKITTGESRVKWVSPDLARNEEGDL 327

Query: 195 VFNDEASGTPDIINKSI 211
           +  DEA+         I
Sbjct: 328 IVVDEAAAIGMEFLDYI 344


>gi|227830703|ref|YP_002832483.1| protein of unknown function DUF699 ATPase [Sulfolobus islandicus
           L.S.2.15]
 gi|227457151|gb|ACP35838.1| protein of unknown function DUF699 ATPase putative [Sulfolobus
           islandicus L.S.2.15]
          Length = 742

 Score = 46.5 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 38/137 (27%), Gaps = 21/137 (15%)

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
           P      ++A RG GK+      + +L++     +I+  + +    +   +  V K L  
Sbjct: 229 PGKRVLVVTAARGRGKSASIGLFLSYLMTEEKFGNILVTSPTYYSSQEI-FNFVIKGLDA 287

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
           L  ++                                     S  +  +     N  G  
Sbjct: 288 LNVKYKLTTSKD--------------------GKIMKITTGESRVKWVSPDLARNEEGDL 327

Query: 195 VFNDEASGTPDIINKSI 211
           +  DEA+         I
Sbjct: 328 IVVDEAAAIGMEFLDYI 344


>gi|37676514|ref|NP_936910.1| hypothetical protein VVA0854 [Vibrio vulnificus YJ016]
 gi|37201056|dbj|BAC96880.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
          Length = 565

 Score = 46.5 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/192 (8%), Positives = 46/192 (23%), Gaps = 23/192 (11%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  I   R +G +T     +L        +    +A  +         E+ +    +P+ 
Sbjct: 63  RNIILKARQLGFSTAIDIYLLDEALFNNRLKCGIVAQDKQAA-----GEIFRTKVEVPYD 117

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
           +       ++      +      +   +        ++            +         
Sbjct: 118 NLPAWLKAAIPIVERKSGANGGRIVFKNGSSIQVATSFRSGTVQRLHISEHGKI------ 171

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP-----------LED 247
             +  P    +   G    ++ N    + S    + G FY +                ED
Sbjct: 172 -CAKYPQKAKEVKTGTLNAIHQNAICFIESTAEGVGGDFYTMCMRAMEQAKSGVELSRED 230

Query: 248 WKRYQIDTRTVE 259
           +  +        
Sbjct: 231 YHFHFFAWWQDP 242


>gi|227822449|ref|YP_002826421.1| DNA packaging protein Gp2 [Sinorhizobium fredii NGR234]
 gi|227341450|gb|ACP25668.1| DNA packaging protein Gp2 [Sinorhizobium fredii NGR234]
          Length = 454

 Score = 46.5 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 37/297 (12%), Positives = 76/297 (25%), Gaps = 36/297 (12%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI-SAGRGIGKT---------TLNAWMMLWL 101
            R + + +     +      ++    ++  +  AG  +GKT          L      W 
Sbjct: 8   RRRRTDILARYRPYAKQREFHAAGASYRERLFMAGNQLGKTLAGAAEAAMHLTGRYPNWW 67

Query: 102 ISTRPGMSIICIA--NSETQLKNTLWAEV-------SKWLSMLPHRHWFEMQSLSLHPSG 152
              R    I+ +A   S    ++ +   +       + W +    +      +     SG
Sbjct: 68  QGRRFDKPIVMLAGSESYELTRDGVQRLLVGPPLNEADWGTGFIPKATIRATTRRSGASG 127

Query: 153 WYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212
               +  + +   +             +              V+ DE    P+ +     
Sbjct: 128 ALDSVTVRHVSGGASTLLFKAYEQGRGK------WQANTVDYVWFDEEP--PEDVY--FE 177

Query: 213 GFFTELNPNRFWIMTSNTRRL-NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271
           G            +T    +  +            D +   +     E       + II 
Sbjct: 178 GITRTNATRGAIAVTFTPLKGLSNVVARYLMEKSPDREVITMTIEDAEHYTPEERQRIIE 237

Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIM-GCDIAGE 327
            Y      AR +     P        P    EEA+  E  D     + + G D   +
Sbjct: 238 SYPAHEREARTKG---VPALGSGRIFP--VTEEAIRVEPFDIPKHWVQIGGLDFGWD 289


>gi|254229671|ref|ZP_04923081.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262395214|ref|YP_003287068.1| ATP-dependent RNA helicase SrmB [Vibrio sp. Ex25]
 gi|151937792|gb|EDN56640.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262338808|gb|ACY52603.1| ATP-dependent RNA helicase SrmB [Vibrio sp. Ex25]
          Length = 407

 Score = 46.5 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 45/318 (14%), Positives = 85/318 (26%), Gaps = 50/318 (15%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           +      + +P + Q E +                       SA  G GKT       L 
Sbjct: 16  EAIEEMGYKRPTKIQAEAIPQALDG------------RDILASAPTGTGKTAAFVLPALQ 63

Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
            +   P        I+ +  +         A+ ++ L+     + F +     +      
Sbjct: 64  YLQDFPRRKPGPARILILTPTRELAMQI--ADQARALAKNTKLNIFTITGGVQYQEHADI 121

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
               Q +        +       +               +  DEA    D+     +   
Sbjct: 122 LATTQDI--------VVATPGRLKEYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRL 173

Query: 216 TELNPNRFWIMTSNTR----RLNGWFYDIFNIP---------LEDWKRYQIDTR-TVEGI 261
           +     R   +  +       + G+  D+ N P          E  K  Q   R      
Sbjct: 174 SNECRWRKQTLLFSATLEGKGVEGFTADLLNDPAEIDAKSPLRERKKIAQWYHRADDAEH 233

Query: 262 DSGFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AID 312
                + II++    + V     E L +   Q  +  IP ++I  E    R         
Sbjct: 234 KLELLKHIITQQAERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFR 293

Query: 313 DLYAPLIMGCDIAGEGGD 330
           D    +++  D+A  G D
Sbjct: 294 DGTVNVLLATDVAARGID 311


>gi|317140295|ref|XP_001818107.2| DEAD/DEAH box helicase [Aspergillus oryzae RIB40]
          Length = 1489

 Score = 46.5 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 65/230 (28%), Gaps = 22/230 (9%)

Query: 39   GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98
            G    P  +  +P +WQ E ++ +D                  + A    GKT ++ + +
Sbjct: 816  GSAPDPRVYDFEPDKWQREILDQIDA------------RKSLFVVAPTSAGKTFISFYAI 863

Query: 99   LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
              ++       I+ +A ++  +                +        L++H   +     
Sbjct: 864  KQILEDDNEGVIVYVAPTKALVNQIA---AEVQARFSKNFKETGKSVLAIHTRDYRINNP 920

Query: 159  EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218
                 + +  + +     +    D +    ++    +  DE        +  I      L
Sbjct: 921  TGCQVLITVPHILQIMLLAPANADPW----SSRVKRIIFDEIHCIGQADDGVIWEQLLLL 976

Query: 219  NPNRFWIM---TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265
             P     +     N +  N W          D K  +  TR  +     +
Sbjct: 977  APCPIIALSATVGNPQEFNKWLKLTQRANGNDLKMIEHSTRYSDLRKYTY 1026


>gi|271969878|ref|YP_003344074.1| helicase [Streptosporangium roseum DSM 43021]
 gi|270513053|gb|ACZ91331.1| putative helicase [Streptosporangium roseum DSM 43021]
          Length = 469

 Score = 46.5 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 36/295 (12%), Positives = 73/295 (24%), Gaps = 45/295 (15%)

Query: 77  IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136
             +  +    G GKT     M+   +    G  ++ +A++   L +    E  +  S L 
Sbjct: 94  RTRLLLHMPTGSGKTRTTLSMVCDFLREHEGRPVLWLASTRELL-DQAAREFHRAWSSLG 152

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
            R            + W  +        D          Y+       +         + 
Sbjct: 153 DRE-------VPILAAWSGQDWRSEDLTDGLLVASLQTIYARRAEPGLLRDLGRRIGLIV 205

Query: 197 NDEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLN---GWFYDIFNIPLEDWKRYQ 252
            DEA         + +        P    +  S T           D      E  K   
Sbjct: 206 FDEAHQAIAPTYRQVVQQLSVAGQPITPIVGLSATPGRTFVGSPADDELAEFFEHTKIEL 265

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
                        +                 +LG+ P  +                E   
Sbjct: 266 ETASDGGATGPVEYLIQQGYLAEPE----FRLLGELPDVDE---------------EPSV 306

Query: 313 DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGCPVGSSI 367
           D   P  +G D               G+ ++ +   + +L++E+++      +S+
Sbjct: 307 DSDDPAELGMD--------------EGDYLKEVTAATLQLVKESHRRIIVFAASV 347


>gi|319762143|ref|YP_004126080.1| terminase [Alicycliphilus denitrificans BC]
 gi|317116704|gb|ADU99192.1| Terminase [Alicycliphilus denitrificans BC]
          Length = 501

 Score = 46.5 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 37/312 (11%), Positives = 74/312 (23%), Gaps = 56/312 (17%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSII 111
            +Q +F+  V           NP   + AI +  R  GK+ L A ++L  +         
Sbjct: 33  EFQKQFLRDVYD---------NPAGTRRAILSIARKNGKSGLIAGLLLAHL--------- 74

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +     Q    +   +S+  + L        + +   P       +  S          
Sbjct: 75  -VGPEAKQNAQIVSGAMSRDQAALVFN--LACKMVQQSPKLAPLVRIIPSGKRLIGLPMN 131

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP-NRFWIMTSNT 230
                           H         DE        +  +    T         ++  +T
Sbjct: 132 VEFRA---LAADGKTAHGLSPSLAILDETGQVRGPQSDFVDAITTSQGAHEAPLLIAIST 188

Query: 231 RRLNG------WFYDIFNIPLEDWKRYQIDTRT-------------VE-----GIDSGFH 266
           +  +       W  D           +                            +    
Sbjct: 189 QAASDQDLFSQWLDDAQRSADPRIVCHLYAAPEGCDLMDESAWRAANPALGLFRSEDDLR 248

Query: 267 EGIISRYGLDSDVARIEILGQFPQQEVNN-FIPHNYIEEAMSREAIDDLYAPLIMGCDI- 324
           E +     + S       L    +    + F+  +  +   +     D   P+  G D+ 
Sbjct: 249 EQMTQAQRMPSMENSARNLLLNQRVSTESPFVSPDVWKANCANLRSFD--GPVFAGLDLS 306

Query: 325 AGEGGDKTVVVF 336
           A    D T +V 
Sbjct: 307 ART--DLTALVI 316


>gi|116196286|ref|XP_001223955.1| hypothetical protein CHGG_04741 [Chaetomium globosum CBS 148.51]
 gi|88180654|gb|EAQ88122.1| hypothetical protein CHGG_04741 [Chaetomium globosum CBS 148.51]
          Length = 2013

 Score = 46.5 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 37/155 (23%), Gaps = 22/155 (14%)

Query: 57   EFMEAVDVHCHSNVNNSNPTIF--------KCAISAGRGIGKTTLNAWMMLWLISTRPGM 108
            + +E +        N     +F           + +  G GKT      M W    RPG 
Sbjct: 1134 QALEEIYAQRFHFFNPMQTQLFHTLYHRPANVLLGSPTGSGKTVAAELAMWWAFRERPGS 1193

Query: 109  SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
             ++ IA  +  ++      V  W + L      ++  L                      
Sbjct: 1194 KVVYIAPMKALVRER----VKDWGARLAKPLGLKLVEL--------TGDNTPDTRTIQDA 1241

Query: 169  YTITCRTYSEERPDTFVGPHN--THGMAVFNDEAS 201
              I       +                 V  DE  
Sbjct: 1242 DIIITTPEKWDGISRSWQTRGYVRKVSLVIIDEIH 1276


>gi|312889922|ref|ZP_07749466.1| type III restriction protein res subunit [Mucilaginibacter paludis
           DSM 18603]
 gi|311297454|gb|EFQ74579.1| type III restriction protein res subunit [Mucilaginibacter paludis
           DSM 18603]
          Length = 907

 Score = 46.5 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/287 (10%), Positives = 67/287 (23%), Gaps = 36/287 (12%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            ++Q   ++ +D H  +N  +         + A  G GKT L   + +     R     +
Sbjct: 15  RKYQQRVLDGLDQHLKNNHLH---------VIAPPGSGKTVLGIEVAI-----RINQPTL 60

Query: 112 CIANSETQLKNTLWA----------EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
            +A +   ++N               V  W+S       F              +L  + 
Sbjct: 61  ILAPTIA-IRNQWIQKLCDLFLQTGMVPDWVSRDIRHPEFLTIVTYQGLHAACNDLKVEE 119

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHN---THGMAVFNDEASGTPDIINKSILGFFTEL 218
              D +              +               +  DEA    +   ++++      
Sbjct: 120 SETDIEEEITENEIGDSSNYNLENIIAGLKEKQIKTIVVDEAHHLKNEWWQTLIK-IKNS 178

Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT-------VEGIDSGFHEGIIS 271
                  +T+              + L      +I               D  +      
Sbjct: 179 IKPVIIGLTATPPYDVTPNEWQRYLELNGPIDVEISVPELIIEGDLCPHQDYVYLSHPTE 238

Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
                    R  I   F + + +  +              ++L    
Sbjct: 239 NEFQQIAQFREGIELLFEEIKNDETLSRAIESHPAWINPGENLEWIY 285


>gi|227827980|ref|YP_002829760.1| hypothetical protein M1425_1713 [Sulfolobus islandicus M.14.25]
 gi|227459776|gb|ACP38462.1| protein of unknown function DUF699 ATPase putative [Sulfolobus
           islandicus M.14.25]
          Length = 726

 Score = 46.5 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 37/132 (28%), Gaps = 21/132 (15%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             ++A RG GK+      + +L++     +I+  + +    +   +  V K L  L  ++
Sbjct: 218 LVVTAARGRGKSASIGLFLSYLMTEEKFGNILVTSPTYYSSQEI-FNFVIKGLDALNVKY 276

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                                                S  +  +     N  G  +  DE
Sbjct: 277 KLTTSKD--------------------GKIMKITTGESRVKWVSPDLARNEEGDLIVVDE 316

Query: 200 ASGTPDIINKSI 211
           A+         I
Sbjct: 317 AAAIGMEFLDYI 328


>gi|260588227|ref|ZP_05854140.1| putative prophage, terminase, ATPase subunit [Blautia hansenii DSM
           20583]
 gi|260541365|gb|EEX21934.1| putative prophage, terminase, ATPase subunit [Blautia hansenii DSM
           20583]
          Length = 620

 Score = 46.5 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 44/351 (12%), Positives = 92/351 (26%), Gaps = 47/351 (13%)

Query: 47  HFSQPHRWQLEFME-AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
               P ++  EF+   +         NS    F   + + RG GK+T+ A   +      
Sbjct: 43  GIRNPTKFMKEFIGVELLDSQEYVFMNSWNKPFCLWLES-RGAGKSTMLALYFMTKGLLF 101

Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
                   + +  Q +   + ++                          A          
Sbjct: 102 NNYWAYICSGNADQAQE-TFRKIEDIAKKNIESMTGLTDVFVNELVKNQANTDGFVRSPM 160

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF-- 223
              Y +   ++ +       G       AV  DE S   + I   I G FT +N      
Sbjct: 161 GFTYKLYNGSFVKTLNSNIDGKRGKRANAVCFDEGSWLSEEIFNVI-GAFTAVNKEFKLG 219

Query: 224 ---------------WIMTSNTRRLNGWFYDIFNIPL-------EDWKRYQIDTRTVEGI 261
                           +  S+   ++  FY+ +           + +    I+   V   
Sbjct: 220 GDIDVNAIPREIPNQLLYASSASSVDTAFYNKYRDFSKKMLLGDDRYFVADINCDIVIHA 279

Query: 262 DSGFH---------EGIISRYGLDSDVARIEILGQFPQQEV-NNFIPHNYIEEAMSREAI 311
                         E + +    + + A  E   +F +    N  I  + I     +   
Sbjct: 280 TQKGIPLNKSLLSQETVDNEMRNNPEKALREYYNRFTKDGGVNQIIKRSLIVRNSEKYVP 339

Query: 312 DDLYAP----LIMGCDIAGEGGDKTVVV-----FRRGNIIEHIFDWSAKLI 353
                      ++  D A    + TV++        G  ++ +   +   +
Sbjct: 340 VMYNDTGKRKFVLCYDPARNIDNSTVLISEILDADEGYKLKIVNSVNFTDL 390


>gi|154500496|ref|ZP_02038534.1| hypothetical protein BACCAP_04168 [Bacteroides capillosus ATCC
           29799]
 gi|150270727|gb|EDM98023.1| hypothetical protein BACCAP_04168 [Bacteroides capillosus ATCC
           29799]
          Length = 750

 Score = 46.5 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 49/180 (27%), Gaps = 10/180 (5%)

Query: 60  EAVDVHCHSNVNN----SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
                H    +      ++   F   +    G GKT   A  +L     R    I+ +A+
Sbjct: 23  RVPYEHQKQAMECMDRINSDAAFSTLVVLPTGGGKTYTAALWLLHNAIDR-HKKILWMAH 81

Query: 116 SETQLKNTLWAEVSKWL-SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            +  L     A         +PH   F         SG  +      +  D     I+  
Sbjct: 82  RQMLLDQAAEAFQKYAYTETIPHISGFRY----RIISGSGSHSRTVDISPDDDLLIISKD 137

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
           +                 + +  DEA  +     + ++ +     P+   I  + T    
Sbjct: 138 SIGRNLSALDEWLAGEEELFLVVDEAHHSTAKTYRRVIDYVRSKVPHVKLIGLTATPFRT 197


>gi|123878605|sp|Q18LD7|TRM3_ELHVK RecName: Full=Tripartite terminase subunit UL15 homolog
 gi|109639437|gb|ABG36582.1| terminase [Elephantid herpesvirus 1]
          Length = 660

 Score = 46.5 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/204 (10%), Positives = 60/204 (29%), Gaps = 21/204 (10%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAI-SAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
           E+++ +    + N +  +    K  +    R  GKT +   ++ +LI     +S+  +A+
Sbjct: 175 EYIKRLFNIENINTSVLDTFKHKTTVFLVPRRHGKTWILTPIITFLIKNFSNISVGYVAH 234

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
            +   ++ +          +P+                  + +   +  +S+   +    
Sbjct: 235 QKHVSQHVMKEVEILCRREIPYVVE-------------NKDNVISVIRTNSRSCALFASC 281

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
           +                  +  DE++        +I+GF  +      +I + NT   + 
Sbjct: 282 F------NTNSIRGQSFNILLVDESNFIKKEALHAIIGFLAQSTAKIIFISSCNTSTQST 335

Query: 236 WFYDIFNIPLEDW-KRYQIDTRTV 258
            F                      
Sbjct: 336 SFLAHVKKTPTQILNVISYVCEEH 359


>gi|257469469|ref|ZP_05633561.1| PhoH family protein [Fusobacterium ulcerans ATCC 49185]
 gi|317063713|ref|ZP_07928198.1| phoH family protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689389|gb|EFS26224.1| phoH family protein [Fusobacterium ulcerans ATCC 49185]
          Length = 435

 Score = 46.5 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 50/194 (25%), Gaps = 19/194 (9%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             +  G G GKT L     L L+  R     + IA             +      L +  
Sbjct: 245 VTLVGGAGTGKTLLAIATGLELVVERKKYKKLLIA-----------RPIIPMGKDLGYLP 293

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE---ERPDTFVGPHNTHG--MA 194
             E + L       +  +   S   D K               + +              
Sbjct: 294 GSEKEKLKPWMQPIFDNIDFLSEAKDDKTGEKVVEGLEAMGILKIEALTYIRGRSIPRGL 353

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254
           +  DEA     +  K+I    T    N   I T + ++++  + D     L         
Sbjct: 354 IIIDEAQNLTPLEIKTI---VTRAGENTKMIFTGDPQQIDNPYLDSNTNGLTYLADRLKT 410

Query: 255 TRTVEGIDSGFHEG 268
              V  +     E 
Sbjct: 411 EDIVGHVTLKKGER 424


>gi|92117549|ref|YP_577278.1| phage terminase [Nitrobacter hamburgensis X14]
 gi|91800443|gb|ABE62818.1| phage Terminase [Nitrobacter hamburgensis X14]
          Length = 542

 Score = 46.5 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 44/327 (13%), Positives = 91/327 (27%), Gaps = 58/327 (17%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR---PGM 108
             WQ   +  +    H +      T+        RG  KT+L A + L         PG 
Sbjct: 49  DPWQERIVRRIYGPRHDDGRRIVNTVTMLL---PRGNRKTSLGAALALLHTIGPERMPGS 105

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            +I  A+   Q     + E    +     +   +          + A    + +      
Sbjct: 106 EVIFSASDRKQ-SGIAFKEARGIVQA--DKRLVKAT------KVYDAFNSAKKIAYPKDS 156

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMT 227
             +   +      +            V  DE        +   +     +++ +   + T
Sbjct: 157 VELEIISADAPSSE------GRTPAFVLADETHIWRGKDLWTVLTNGLDKIDNSLLVVTT 210

Query: 228 SNTRRLNGWFYDIFNIPLE----------------------DWKRYQIDTRTVEGIDSGF 265
           +  R  +   Y+I +   +                      D+   ++  R   G   G+
Sbjct: 211 TAGRGTDNIGYEIIDRARKIARGEIVDPTVLPVLFEAEPDCDYTSEEVWRRVNPGSPHGY 270

Query: 266 ---------HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE-AMSREAIDDLY 315
                     +         S + R + L  +     + F+     +E A   +      
Sbjct: 271 PSIEGFRRHVKRAQDNPTERSSLKRYK-LNIWEDSSSSPFVDMLVYDEGAGEIDTAILDG 329

Query: 316 APLIMGCDIAGEGGDKTVV--VFRRGN 340
            P  +G D++    D +VV   FR G+
Sbjct: 330 EPCWLGVDLS-SSIDLSVVIACFRDGD 355


>gi|290466769|gb|ADD25699.1| putative terminase large subunit [Lactococcus phage 1358]
          Length = 454

 Score = 46.5 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/264 (12%), Positives = 65/264 (24%), Gaps = 20/264 (7%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
            +  GRG  K++     ++  I   P              + +++ E  K ++ LP    
Sbjct: 50  WLKGGRGSLKSSYIGTEIVLGIMEDPLAHAYVFRKVGDTCRGSVFNEYQKIIARLPDSMQ 109

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
              +      +           G +            + +  TF             DE 
Sbjct: 110 ANWKRQ---LNPLQLVYTNPDTGHEQFILFKGGDNPRKVKSATFPQGFVRFIHYEEADEF 166

Query: 201 SGTPDIINKSILGFFTELNPNRFWIMT--SNTRRLNGWFYDIFNIPLED-------WKRY 251
                   ++I       + +    +    N  ++ G + +     L            +
Sbjct: 167 E--SPQDFRTINASLLRGSDDITPAVFYSYNPPKIRGHWLNEHVRDLTGTPMNYVSHTNF 224

Query: 252 QIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
               +     +   F          +      E LG         F   N IE  +  + 
Sbjct: 225 LTCYKLHPEWLGKTFLAEAFHTMKYNRRQFDWEYLGLDVATGNEVF---NNIESRVITQE 281

Query: 311 IDDLYAPLI-MGCDIAGEGGDKTV 333
             D +      G D  G   D  V
Sbjct: 282 ERDNFEDYRKSGVDF-GFSKDPFV 304


>gi|261212921|ref|ZP_05927205.1| hypothetical protein VCJ_003197 [Vibrio sp. RC341]
 gi|260837986|gb|EEX64663.1| hypothetical protein VCJ_003197 [Vibrio sp. RC341]
          Length = 506

 Score = 46.5 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/192 (9%), Positives = 47/192 (24%), Gaps = 23/192 (11%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  I   R +G +T     +L        +    +A  +         E+ +    +P+ 
Sbjct: 4   RNIILKARQLGFSTAIDIYLLDEALFNKRLKCGIVAQDKQAA-----GEIFRTKVEVPYD 58

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
           +       ++      +      M   +        ++            +         
Sbjct: 59  NLPAWLKAAIPTEERKSGANGGRMVFKNGSSIQVATSFRSGTVQRLHISEHGKI------ 112

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP-----------LED 247
             +  P    +   G    ++ N    + S    + G FY +                ED
Sbjct: 113 -CAKYPHKAKEVKTGTLNAIHQNAICFIESTAEGVGGDFYTMCMRAMEQAKSGVELSRED 171

Query: 248 WKRYQIDTRTVE 259
           ++ +        
Sbjct: 172 YQFHFFAWWQDP 183


>gi|77359468|ref|YP_339043.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874379|emb|CAI85600.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125]
          Length = 408

 Score = 46.5 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/196 (10%), Positives = 41/196 (20%), Gaps = 15/196 (7%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-----SII 111
           +                         SA  G GKT       +  +   P        ++
Sbjct: 18  KMGYETPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAIQYLLDFPRRDPGFARVL 77

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +  +           + +   +L  R      +L +                +  +  +
Sbjct: 78  VMTPTRELAYQ-----IHEQCELLAKR-----TNLKIGVVTGGINYGTHKEIFEKNNDIL 127

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
                           H  H   +  DEA    D+  K  +    +   NR      +  
Sbjct: 128 IATPGRLMEYLETENFHAEHVEMLIIDEADRMLDMGFKKEMSRICDEAKNRRQCFLFSAT 187

Query: 232 RLNGWFYDIFNIPLED 247
                        L D
Sbjct: 188 LEGDSVERFAETTLND 203


>gi|331266892|ref|YP_004326522.1| helicase superfamily protein [Streptococcus oralis Uo5]
 gi|326683564|emb|CBZ01182.1| helicase superfamily protein [Streptococcus oralis Uo5]
          Length = 877

 Score = 46.5 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 59/196 (30%), Gaps = 30/196 (15%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            ++Q + ++    +      +         ++A  G GKTT+        +  R G   +
Sbjct: 11  RQYQKQVLDCFQDYQADGHVH--------LVAAP-GSGKTTIG-----IELIARFGNPAL 56

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +  +          E  +W+  +      + Q LS   S    E+   ++      ++ 
Sbjct: 57  ILVPT------VTIRE--QWVDRIQTAFLEDGQRLSDLVSQNLKEMKALTIVTYQAFHSA 108

Query: 172 TCRTYSEERPDTFVG--------PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
             +  S+E  +                    +  DE     +   KS+  F  +  P + 
Sbjct: 109 MNQLQSQEDGEAEDFVGFDLLASLRAQKVATLCLDECHHLRNEWWKSLEAFRKQYGPLKL 168

Query: 224 WIMTSNTRRLNGWFYD 239
             +T+     +     
Sbjct: 169 ISLTATPPYDSEPELW 184


>gi|291458062|ref|ZP_06597452.1| CRISPR-associated helicase Cas3 domain protein [Oribacterium sp.
           oral taxon 078 str. F0262]
 gi|291419394|gb|EFE93113.1| CRISPR-associated helicase Cas3 domain protein [Oribacterium sp.
           oral taxon 078 str. F0262]
          Length = 965

 Score = 46.5 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/188 (12%), Positives = 53/188 (28%), Gaps = 14/188 (7%)

Query: 77  IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN--TLWAEVSKWLSM 134
           +++ ++    G GKT  +    L          II +    + ++    ++ E+    ++
Sbjct: 243 LYRLSV--PTGGGKTIASLAFALRHALCHGMKRIIYVIPYTSIIEQNAAVFKEILGEQNV 300

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
           L H    + +                 M +          +    RP      HN     
Sbjct: 301 LEHHSNVDYEDDEE-LCPMQLAAENWDMPLIVTTNVQFFESLFSNRPSKCRKIHNIANSV 359

Query: 195 VFNDEASGTPDIINK----SILGFFTELNPNRFWIMTSNTR-----RLNGWFYDIFNIPL 245
           +  DEA   P    +    SI       + +      +        +  G   ++     
Sbjct: 360 LIFDEAQMLPKDYLQPCISSIEELIRRYHCSAVLCTATQPDIDPFLQSAGEVRELCPDMA 419

Query: 246 EDWKRYQI 253
           E +  ++ 
Sbjct: 420 EQFSFFRR 427


>gi|196048452|ref|ZP_03115627.1| phage terminase, large subunit, pbsx family [Bacillus cereus
           03BB108]
 gi|196020709|gb|EDX59441.1| phage terminase, large subunit, pbsx family [Bacillus cereus
           03BB108]
          Length = 419

 Score = 46.1 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 76/268 (28%), Gaps = 25/268 (9%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
             ++      RG  K+       +  I   P  +++ +      LK + + ++   ++ L
Sbjct: 23  NFYRVC-KGSRGSKKSKTTVLNFVKRIMQYPWANLLVVRRYSNTLKQSCYTDLKWAINRL 81

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
             +  F+                   +        I  R   +    T +     +    
Sbjct: 82  GVKDQFKFNESM------------PEITYKPTGQKILFRGLDDPLKITSITVDVGNLCWA 129

Query: 196 FNDEASGTPDIIN-----KSILGFFTELNPNRFWIMTSNTRRLN----GWFYDIFNIPLE 246
           + +EA    D        +SI G F   +  +   +T N    N     +F+D      +
Sbjct: 130 WFEEAYEIEDQHKFETVVESIRGSFDAPDFFKQITVTFNPWSENHWLKSYFFDEATQAYD 189

Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306
            +       +  E +D        S Y  +   ARI   G++          +  + +  
Sbjct: 190 TF-AITTTYKCNEWLDEQDRARYESLYVKNPRRARIVCDGEW-GVADGLVYENFQVRDFD 247

Query: 307 SREAIDDLYAPLIMGCDIAGEGGDKTVV 334
             E           G D      D T +
Sbjct: 248 IDEIRQRKDVQSAFGLDFGYT-NDPTAL 274


>gi|323342091|ref|ZP_08082324.1| DEAD/DEAH box family ATP-dependent RNA helicase [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322464516|gb|EFY09709.1| DEAD/DEAH box family ATP-dependent RNA helicase [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 446

 Score = 46.1 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 56/233 (24%), Gaps = 22/233 (9%)

Query: 44  PLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS 103
            L  F +    Q + ++ +                   + +  G GKT    + +L LI 
Sbjct: 11  ELNKFRELTSVQEKVLKEI------------KNKRDLIVKSDTGTGKTHAFLFAILELID 58

Query: 104 TRPGMS-IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
                +  + +A +          E++  +           + ++   +    +      
Sbjct: 59  PTVDQTQALILAPT---------RELAMQIQNFAREITTLDERITTELAIGGMDNSRLKK 109

Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222
            I+ +   +           ++         A+  DE     D    + +        N 
Sbjct: 110 KIEKQPMILITTPGKFLDILSWSVLRLDFIKALVIDETDMMLDYGFINEVDTIASRLSND 169

Query: 223 FWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275
              M  +     G    I        +    + +    ID             
Sbjct: 170 TLFMLYSATIPTGLRAFIKKYLKHPIEIVSTEEKLKPRIDHILINQRHRDMNE 222


>gi|323475068|gb|ADX85674.1| ATPase of unknown function [Sulfolobus islandicus REY15A]
          Length = 726

 Score = 46.1 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 37/135 (27%), Gaps = 21/135 (15%)

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
           P      ++A RG GK+      + +L++     +I+  + +    +   +  V K L  
Sbjct: 213 PGKRVLVVTAARGRGKSASIGLFLSYLMTEEKFGNILVTSPTYYSSQEI-FNFVIKGLDA 271

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
           L  ++                                     S  +  +     N  G  
Sbjct: 272 LNVKYKLTTSKD--------------------GKIMKITTGESRVKWVSPDLARNEEGDL 311

Query: 195 VFNDEASGTPDIINK 209
           +  DEA+        
Sbjct: 312 IVVDEAAAIGMEFLD 326


>gi|94270011|ref|ZP_01291630.1| Helicase-like:Peptidase S24, S26A and S26B:Type III restriction
           enzyme, res subunit:DEAD/DEAH box helicase-like [delta
           proteobacterium MLMS-1]
 gi|93450973|gb|EAT01956.1| Helicase-like:Peptidase S24, S26A and S26B:Type III restriction
           enzyme, res subunit:DEAD/DEAH box helicase-like [delta
           proteobacterium MLMS-1]
          Length = 1196

 Score = 46.1 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 48/201 (23%), Gaps = 34/201 (16%)

Query: 34  RFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93
              P        E   +P   Q E + A+                +  +    G+GKT L
Sbjct: 394 HALPISPGSDEQEAPPEPTALQKEALAALTATRREG-------YRRGLVVMATGLGKTWL 446

Query: 94  NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
            A    +         ++ +A+ E  L+                       +  L     
Sbjct: 447 AA----FDAGHCTARRVLFVAHREEILQQAA--------------------ATFLRIRPR 482

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213
                      D++   +     +  R +        H   V  DE          +   
Sbjct: 483 ARAGFYLGRQRDAEVDLLFASIQTLARSEHLARFAADHFDYVVVDEFH---HAAAATYRR 539

Query: 214 FFTELNPNRFWIMTSNTRRLN 234
                NP     +T+   R +
Sbjct: 540 LLRHFNPRFLLGLTATPERTD 560


>gi|185178777|ref|ZP_02964578.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 5 str.
           ATCC 27817]
 gi|184209393|gb|EDU06436.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 5 str.
           ATCC 27817]
          Length = 470

 Score = 46.1 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/159 (12%), Positives = 47/159 (29%), Gaps = 16/159 (10%)

Query: 54  WQLEFMEAVDVH-------CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
           +Q   ++++            +               A  G GKT   A  +L  +    
Sbjct: 8   YQKWILDSLADQKIFEPTPIQTKAIPLISKKENVIGIAPTGTGKTLAFALPILNNLDLSQ 67

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
            +  I IA +   ++   +++++ +    P         L +        + +Q     +
Sbjct: 68  KLQAIIIAPTRELVRQI-FSKIALFKKQQPL--------LQIKMLIGGESIDKQINSQLN 118

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
           K + I       ++  +           +  DEA    D
Sbjct: 119 KAHIIVATPTRLKQVLSSQVLDLRSINTLVFDEADMLMD 157


>gi|171920644|ref|ZP_02931883.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 13 str.
           ATCC 33698]
 gi|188024390|ref|ZP_02997054.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 7 str.
           ATCC 27819]
 gi|188518412|ref|ZP_03003908.1| superfamily II DNA and RNA helicase [Ureaplasma urealyticum serovar
           11 str. ATCC 33695]
 gi|188524231|ref|ZP_03004285.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 12 str.
           ATCC 33696]
 gi|195867393|ref|ZP_03079397.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 9 str.
           ATCC 33175]
 gi|198273326|ref|ZP_03205862.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 4 str.
           ATCC 27816]
 gi|209554212|ref|YP_002285037.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|225550559|ref|ZP_03771508.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 2 str.
           ATCC 27814]
 gi|225551102|ref|ZP_03772048.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 8 str.
           ATCC 27618]
 gi|171903372|gb|EDT49661.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 13 str.
           ATCC 33698]
 gi|188018658|gb|EDU56698.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 7 str.
           ATCC 27819]
 gi|188998157|gb|EDU67254.1| superfamily II DNA and RNA helicase [Ureaplasma urealyticum serovar
           11 str. ATCC 33695]
 gi|195660020|gb|EDX53400.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 12 str.
           ATCC 33696]
 gi|195660869|gb|EDX54122.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 9 str.
           ATCC 33175]
 gi|198249846|gb|EDY74626.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 4 str.
           ATCC 27816]
 gi|209541713|gb|ACI59942.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|225378917|gb|EEH01282.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 8 str.
           ATCC 27618]
 gi|225379713|gb|EEH02075.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 2 str.
           ATCC 27814]
          Length = 445

 Score = 46.1 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/159 (12%), Positives = 47/159 (29%), Gaps = 16/159 (10%)

Query: 54  WQLEFMEAVDVH-------CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
           +Q   ++++            +               A  G GKT   A  +L  +    
Sbjct: 8   YQKWILDSLADQKIFEPTPIQTKAIPLISKKENVIGIAPTGTGKTLAFALPILNNLDLSQ 67

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
            +  I IA +   ++   +++++ +    P         L +        + +Q     +
Sbjct: 68  KLQAIIIAPTRELVRQI-FSKIALFKKQQPL--------LQIKMLIGGESIDKQINSQLN 118

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
           K + I       ++  +           +  DEA    D
Sbjct: 119 KAHIIVATPTRLKQVLSSQVLDLRSINTLVFDEADMLMD 157


>gi|17988794|ref|NP_541427.1| type I restriction-modification system restriction subunit
           [Brucella melitensis bv. 1 str. 16M]
 gi|17984612|gb|AAL53691.1| type i restriction-modification system restriction subunit
           [Brucella melitensis bv. 1 str. 16M]
          Length = 783

 Score = 46.1 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 81/291 (27%), Gaps = 32/291 (10%)

Query: 11  LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70
            +  L  +L  A  +   +NFV+     G + K L  + Q          AV        
Sbjct: 244 QDILLAGLLAPANLLDLIRNFVVFETIGGRRIKKLARYQQ--------FVAVGKAIERIR 295

Query: 71  NNSNPTIFKCAISAGRGIGKTTLNAWMM--LWLISTRPGMSIICIANSETQLKNTLWAEV 128
              NP      I   +G GK+    ++   L  +      +I+ + +             
Sbjct: 296 TAPNPQRRGGVIHHTQGSGKSLTMVFLATKLRRLPEAENPTIVIVTDRTDLDDQIT---- 351

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR-TYSEERPDTFVGP 187
                       F+    +        + L +++   +    +T    +    P      
Sbjct: 352 ----------GQFQRSGFANPMQAESGDSLRKALSGGAGTTVLTTVHKFHSAVPKRSSVI 401

Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR--RLNGWFYDIFNIPL 245
                + V  DEA         ++        PN   I  + T   + +    + F   L
Sbjct: 402 SKARNVFVMVDEAH---RTQYGALAARMRAGLPNACMIAFTGTPIDKKDRSTREAFGDYL 458

Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
             +       +    +   + E   +R  +D      E+   FP+   +  
Sbjct: 459 HRY-LIDQAVKDGATVPIYY-EMRDARIRIDGRDFEREVRAAFPELSEDEI 507


>gi|37680384|ref|NP_934993.1| DNA or RNA helicase [Vibrio vulnificus YJ016]
 gi|37199131|dbj|BAC94964.1| DNA or RNA helicase [Vibrio vulnificus YJ016]
          Length = 930

 Score = 46.1 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 50/184 (27%), Gaps = 34/184 (18%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P+  QL+ ++ +                +  +  G G+GKT L+A    +         +
Sbjct: 180 PNSAQLDALQRLSETRQKGNV-------RGLVVMGTGMGKTWLSA----FDAKQLEAKRV 228

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + +A+ E  L   L      W                   +G+Y    +Q          
Sbjct: 229 LFVAHREEILTQALMTFAKLW---------------PQKSAGYYHGKSKQKNK-----EM 268

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
           +     S  +          +   +  DE          +I        P     +T+  
Sbjct: 269 LFASVQSLGKTAQLKHFSPDYFDYIVVDEFHHASAKTYLNI---LNHFEPKFLLGLTATP 325

Query: 231 RRLN 234
            R +
Sbjct: 326 ERTD 329


>gi|262402964|ref|ZP_06079524.1| hypothetical protein VOA_000945 [Vibrio sp. RC586]
 gi|262350463|gb|EEY99596.1| hypothetical protein VOA_000945 [Vibrio sp. RC586]
          Length = 565

 Score = 46.1 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/192 (9%), Positives = 47/192 (24%), Gaps = 23/192 (11%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  I   R +G +T     +L        +    +A  +         E+ +    +P+ 
Sbjct: 63  RNIILKARQLGFSTAIDIYLLDEALFNKRLKCGIVAQDKQAA-----GEIFRTKVEVPYD 117

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
           +       ++      +      M   +        ++            +         
Sbjct: 118 NLPAWLKAAIPTEERKSGANGGRMVFKNGSSIQVATSFRSGTVQRLHISEHGKI------ 171

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP-----------LED 247
             +  P    +   G    ++ N    + S    + G FY +                ED
Sbjct: 172 -CAKYPHKAKEVKTGTLNAIHQNAICFIESTAEGVGGDFYTMCMRAMEQAKSGVELSRED 230

Query: 248 WKRYQIDTRTVE 259
           ++ +        
Sbjct: 231 YQFHFFAWWQDP 242


>gi|229528225|ref|ZP_04417616.1| large subunit terminase [Vibrio cholerae 12129(1)]
 gi|229334587|gb|EEO00073.1| large subunit terminase [Vibrio cholerae 12129(1)]
          Length = 565

 Score = 46.1 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/192 (9%), Positives = 47/192 (24%), Gaps = 23/192 (11%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  I   R +G +T     +L        +    +A  +         E+ +    +P+ 
Sbjct: 63  RNIILKARQLGFSTAIDIYLLDEALFNKRLKCGIVAQDKQAA-----GEIFRTKVEVPYD 117

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
           +       ++      +      M   +        ++            +         
Sbjct: 118 NLPAWLKAAIPTEERKSGANGGRMVFKNGSSIQVATSFRSGTVQRLHISEHGKI------ 171

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP-----------LED 247
             +  P    +   G    ++ N    + S    + G FY +                ED
Sbjct: 172 -CAKYPHKAKEVKTGTLNAIHQNAICFIESTAEGVGGDFYTMCMRAMEQAKSGVELSRED 230

Query: 248 WKRYQIDTRTVE 259
           ++ +        
Sbjct: 231 YQFHFFAWWQDP 242


>gi|295840070|ref|ZP_06827003.1| translation initiation factor IF-2 [Streptomyces sp. SPB74]
 gi|197697038|gb|EDY43971.1| translation initiation factor IF-2 [Streptomyces sp. SPB74]
          Length = 489

 Score = 46.1 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/255 (10%), Positives = 62/255 (24%), Gaps = 26/255 (10%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             I    G GK+      + +     PG+  + +  +   L  T                
Sbjct: 25  VLICGPAGTGKSLAMLQKLHFTCLAVPGLRALLVRQTHASLTGTTL-------------V 71

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
            FE   +    +         S      +             D      ++    +  DE
Sbjct: 72  TFERTVVGEAMAAGLVRWFGGSARQPPAYRYANGSEILVGGLDRPEKFLSSEFDRIAVDE 131

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIM-TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
           A+      +++++       P    I+  +N  + +   +          +      R  
Sbjct: 132 ATQISKTAHETLITRLRGGAPTYKQIVCAANPAQPS--HWLKQRADTGTMRLINSRHRDN 189

Query: 259 E------GIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHNYIEEAMSREAI 311
                  G  +      +S+    S V R+ +  GQ+            + +     +  
Sbjct: 190 PAYVNADGSLTEIGAAYLSKLDALSGVRRLRLRDGQW-AAAEGMVYDG-WDDAVHLIDPA 247

Query: 312 DDL-YAPLIMGCDIA 325
                 P     D  
Sbjct: 248 PIPKEWPRWWVVDFG 262


>gi|52081321|ref|YP_080112.1| Phage terminase, large subunit protein [Bacillus licheniformis ATCC
           14580]
 gi|52786700|ref|YP_092529.1| YqaT [Bacillus licheniformis ATCC 14580]
 gi|52004532|gb|AAU24474.1| Phage terminase, large subunit protein [Bacillus licheniformis ATCC
           14580]
 gi|52349202|gb|AAU41836.1| YqaT [Bacillus licheniformis ATCC 14580]
          Length = 431

 Score = 46.1 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 74/275 (26%), Gaps = 48/275 (17%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
             F+  +  G G  K+   A  ++ L       +++ I       +++ ++     ++ L
Sbjct: 19  QKFQLLV-GGYGSSKSYHIALKLI-LKLLEEKRTVLVIREVYDTHRDSTFSHFEGIINDL 76

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
              H     +  +             +   +    I                   +   +
Sbjct: 77  EIDHIVRCMTSPM------------QVRFPNGSRIIFKGLDKPA-----KLKSINNISII 119

Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-------------- 241
           + +E S       K +LG           I ++N    + W Y  F              
Sbjct: 120 WIEECSEVKYEGFKELLGRLRHPTLPLHMIFSTNPVGEDNWTYKHFFKDDLNNRFVLDDK 179

Query: 242 ------NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN 295
                  I L D   +         +   +   +      D D+ RI   G F    V  
Sbjct: 180 ELYEKRTIVLNDTYYHHSTAEDNLFLPESYVRQLDELKEYDPDLYRIARKGHFGVNGVRV 239

Query: 296 F-----IPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
           F      PH+ + +A+S            +G D  
Sbjct: 240 FPQLEEWPHDEVMQAVSNIDCPIK----RVGMDFG 270


>gi|160942234|ref|ZP_02089543.1| hypothetical protein CLOBOL_07120 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434791|gb|EDP12558.1| hypothetical protein CLOBOL_07120 [Clostridium bolteae ATCC
           BAA-613]
          Length = 829

 Score = 46.1 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 57/187 (30%), Gaps = 36/187 (19%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           QP   Q+E + A+                K  I A  GIGKT L A        ++P   
Sbjct: 220 QPRGAQIEALYALKNSRLEGSE-------KALICAATGIGKTYLAA------FDSQPYER 266

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           ++ +A+ E  LK    AE  + +       +F  +  +                 D    
Sbjct: 267 VLFVAHREEILKQA--AESFRNVRHSDDYGFFYGKEKTR----------------DKSVI 308

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNRFWIMTS 228
             +  +  +            +   +  DE      D   K +  F     P     +T+
Sbjct: 309 FASVSSLGKTDYLNESYFARDYFDYIVIDEFHHAVTDQYKKIMEYF----KPRFLLGLTA 364

Query: 229 NTRRLNG 235
              R++G
Sbjct: 365 TPERMDG 371


>gi|320582894|gb|EFW97111.1| pre-mRNA processing RNA-helicase, putative [Pichia angusta DL-1]
          Length = 752

 Score = 46.1 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/288 (11%), Positives = 65/288 (22%), Gaps = 57/288 (19%)

Query: 32  VMRFFPWGIKGKPLE--------HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS 83
                 W   G PL          F  P   Q E +                      + 
Sbjct: 186 ARPIITWDHLGLPLSLRSALDSLGFEAPTPIQCEALPN--------------------VM 225

Query: 84  AGR--------GIGKTTLNAWMMLWLISTRPGM---SIICIANSETQLKNTLWAEVSKWL 132
           +G         G GKT      +   +   P       + +  +        + E S +L
Sbjct: 226 SGHDLIGIAKTGSGKTLAFLLPLFRQLLANPAAPSVRALVMTPTRELAMQI-FNESSVFL 284

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
             L  R        S+       +     +           R       +       +H 
Sbjct: 285 EALKLRGCCCYGGQSISQQIAEIKKGCDLVVGTPG------RIIDLLCANNGRVLRLSHV 338

Query: 193 MAVFNDEASGTPDIINK---SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
             +  DEA    D+  +     +   T  +        +   R+          P+E   
Sbjct: 339 TYLVLDEADRMFDMGFEPQVMKILKVTRPDRQTVLFSATFPPRMEALARRCLTDPVEVLV 398

Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR-IEILGQFPQQEVNNF 296
             +        + +            +    R +++L +F   +    
Sbjct: 399 GAK-------NLVNDKIMQQFEILDEEQKFGRLLQVLARFQSSDSGKI 439


>gi|156044614|ref|XP_001588863.1| hypothetical protein SS1G_10411 [Sclerotinia sclerotiorum 1980]
 gi|154694799|gb|EDN94537.1| hypothetical protein SS1G_10411 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1660

 Score = 46.1 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 60/240 (25%), Gaps = 31/240 (12%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P  WQ + +  +D                  + A    GKT ++ + M  ++       +
Sbjct: 620 PDGWQRDVLNQLDADKS------------IFVVAPTSAGKTFISFYAMEQILRADNDGVL 667

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + +A ++  +         ++    P          ++H   +          + +  + 
Sbjct: 668 VYVAPTKALVNQIAAEVQGRFSKRFPQAGKGVW---AIHTRDYRVNNPTGCQILVTVPHI 724

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM---T 227
           +     S     ++          +  DE        +  +      L P     +    
Sbjct: 725 LQIMLLSPTNAKSW----APRVKRIIFDEIHSIGQSEDGVVWEQLLLLAPCPIIALSATV 780

Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
            N  +   W  +       + K  +  TR            +             E LG 
Sbjct: 781 GNPEQFADWLGETQKANGSELKMIKHSTRYS---------DLRKFMYEPPQTFHFEGLGD 831


>gi|153820181|ref|ZP_01972848.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126509274|gb|EAZ71868.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
          Length = 565

 Score = 46.1 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/192 (9%), Positives = 47/192 (24%), Gaps = 23/192 (11%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  I   R +G +T     +L        +    +A  +         E+ +    +P+ 
Sbjct: 63  RNIILKARQLGFSTAIDIYLLDEALFNKRLKCGIVAQDKQAA-----GEIFRTKVEVPYD 117

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
           +       ++      +      M   +        ++            +         
Sbjct: 118 NLPAWLKAAIPTEERKSGANGGRMVFKNGSSIQVATSFRSGTVQRLHISEHGKI------ 171

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP-----------LED 247
             +  P    +   G    ++ N    + S    + G FY +                ED
Sbjct: 172 -CAKYPHKAKEVKTGTLNAIHQNAICFIESTAEGVGGDFYTMCMRAMEQAKSGVELSRED 230

Query: 248 WKRYQIDTRTVE 259
           ++ +        
Sbjct: 231 YQFHFFAWWQDP 242


>gi|153800548|ref|ZP_01955134.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|124123992|gb|EAY42735.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
          Length = 565

 Score = 46.1 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/192 (9%), Positives = 47/192 (24%), Gaps = 23/192 (11%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  I   R +G +T     +L        +    +A  +         E+ +    +P+ 
Sbjct: 63  RNIILKARQLGFSTAIDIYLLDEALFNKRLKCGIVAQDKQAA-----GEIFRTKVEVPYD 117

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
           +       ++      +      M   +        ++            +         
Sbjct: 118 NLPAWLKAAIPTEERKSGANGGRMVFKNGSSIQVATSFRSGTVQRLHISEHGKI------ 171

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP-----------LED 247
             +  P    +   G    ++ N    + S    + G FY +                ED
Sbjct: 172 -CAKYPHKAKEVKTGTLNAIHQNAICFIESTAEGVGGDFYTMCMRAMEQAKSGVELSRED 230

Query: 248 WKRYQIDTRTVE 259
           ++ +        
Sbjct: 231 YQFHFFAWWQDP 242


>gi|302879980|ref|YP_003848544.1| type III restriction protein res subunit [Gallionella
           capsiferriformans ES-2]
 gi|302582769|gb|ADL56780.1| type III restriction protein res subunit [Gallionella
           capsiferriformans ES-2]
          Length = 1010

 Score = 46.1 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 56/216 (25%), Gaps = 33/216 (15%)

Query: 37  PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
            W   G+       P   Q E ++A+     +N            + A  G GK+ ++  
Sbjct: 169 EWLHSGRITLSRKHPLPHQQEALDAIADGLQTND-------RATVVMAC-GTGKSLVS-- 218

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTL--WAEVSKWLSML------------PHRHWFE 142
             LW    R   +I+ +  S   ++  L  W   + W                   +   
Sbjct: 219 --LWAAEQRECKAILVLVPSLALVRQLLHEWLRETAWERFTFMCVCSDPTVAKGADNLVV 276

Query: 143 MQSLSLHPSGWYAELLEQSM-GIDSKHYTITCRTYSEERPDTFVGPHNTH----GMAVFN 197
            Q+    P    + ++ + +         +     S       +                
Sbjct: 277 HQADLDFPVTTESAVVSRFLNKAFDGIRIVFSTYQSAHVVAEGMPVGADGMALPFDLAIF 336

Query: 198 DEASGTPDIINKSILGFFTELNP--NRFWIMTSNTR 231
           DEA  T             + N    +    T+  R
Sbjct: 337 DEAHKTASREGTRFSFALEDANLPIRKRLFFTATPR 372


>gi|153212376|ref|ZP_01948158.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|124116584|gb|EAY35404.1| conserved hypothetical protein [Vibrio cholerae 1587]
          Length = 565

 Score = 46.1 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/192 (9%), Positives = 47/192 (24%), Gaps = 23/192 (11%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  I   R +G +T     +L        +    +A  +         E+ +    +P+ 
Sbjct: 63  RNIILKARQLGFSTAIDIYLLDEALFNKRLKCGIVAQDKQAA-----GEIFRTKVEVPYD 117

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
           +       ++      +      M   +        ++            +         
Sbjct: 118 NLPAWLKAAIPTEERKSGANGGRMVFKNGSSIQVATSFRSGTVQRLHISEHGKI------ 171

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP-----------LED 247
             +  P    +   G    ++ N    + S    + G FY +                ED
Sbjct: 172 -CAKYPHKAKEVKTGTLNAIHQNAICFIESTAEGVGGDFYTMCMRAMEQAKSGVELSRED 230

Query: 248 WKRYQIDTRTVE 259
           ++ +        
Sbjct: 231 YQFHFFAWWQDP 242


>gi|308481512|ref|XP_003102961.1| hypothetical protein CRE_31221 [Caenorhabditis remanei]
 gi|308260664|gb|EFP04617.1| hypothetical protein CRE_31221 [Caenorhabditis remanei]
          Length = 932

 Score = 46.1 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/289 (11%), Positives = 77/289 (26%), Gaps = 31/289 (10%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNS-------------NPTIFKCAISAGRGIGKTTLNAWM 97
           P +WQ   ++    +                     NP  F   I    G GK+ + +  
Sbjct: 533 PTKWQR-VVDKGGHYDKCTPRGDLNQSQYAAVRMALNPNRFLVCIQGPPGTGKSHVLSIF 591

Query: 98  MLWLISTRPGMSII-CIANSETQLKNTLWAEVSKWLSMLPHR-HWFEMQSLSLHPSGWYA 155
           +  L+       ++     +   LK      + + + + PH      +    L+ S    
Sbjct: 592 LWKLLKEGKQAVVLTPTREALKNLKTMTLKAIRQKIYLHPHALMDISLIKEILNTSSAAI 651

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI-INKSILGF 214
           E ++    I      +     S    +          + V  DEA+   +     ++   
Sbjct: 652 EAVKTINTIMPNLRIVFATMESTFTCEVMRSKQFNPEVCVI-DEAAQVMETVTWPAVNQM 710

Query: 215 --FTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT-----------RTVEGI 261
                    +       T        +   +     K+ Q                    
Sbjct: 711 KRIVMAGDPKQLPALVKTEEAKARHLERSVMERIIEKKEQYSWIMLEEQYRSHKDITGWS 770

Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
           +  F++G +      ++     +  + P+     F P  +++  +  + 
Sbjct: 771 NGCFYDGKLMNSTDVNNTLHTSLDPKPPKTYTKLFNPLVFVDTCLETDY 819


>gi|262199577|ref|YP_003270786.1| serine/threonine protein kinase [Haliangium ochraceum DSM 14365]
 gi|262082924|gb|ACY18893.1| serine/threonine protein kinase [Haliangium ochraceum DSM 14365]
          Length = 1280

 Score = 46.1 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/248 (11%), Positives = 70/248 (28%), Gaps = 12/248 (4%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P   +   ++A       ++  + P++    +    G+GK+ L   +   + +  P + +
Sbjct: 456 PLVGRQAIIDAAQELVRQSMRTNTPSL--VTLLGDHGVGKSRLCRELAALVQAQHPEVRV 513

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + +    +   +    E+ + +  L       ++   L               +DS    
Sbjct: 514 LMLRA-GSPADD----ELDELVQRLDAMLHAMIEPGPLSARLLADPAAIAE-SLDSDEMA 567

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
            T     +   +          +AV  D+     D +  ++     +      WI  +  
Sbjct: 568 PTPSAVRKLG-NALRRVAGKLPLAVIVDDVHYASDEVLDALEYAALDAGGTPLWIAVAGH 626

Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGII--SRYGLDSDVARIEILGQF 288
            RL               +R ++ +   E         +         +        G  
Sbjct: 627 LRLERRRPQWGQRAF-RHQRIRVPSLDSEAAMRLAAALLRPVEYPPRTALETLARWTGGN 685

Query: 289 PQQEVNNF 296
           PQ  V+  
Sbjct: 686 PQALVDLV 693


>gi|197303511|ref|ZP_03168550.1| hypothetical protein RUMLAC_02233 [Ruminococcus lactaris ATCC
           29176]
 gi|197297509|gb|EDY32070.1| hypothetical protein RUMLAC_02233 [Ruminococcus lactaris ATCC
           29176]
          Length = 542

 Score = 46.1 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 36/319 (11%), Positives = 88/319 (27%), Gaps = 57/319 (17%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT-TLNAWMMLWLISTRPGMSII 111
            WQ + +  +     S+ N    T F   +   + +GK+    A  +  L +     + +
Sbjct: 59  PWQEQLIRDIFGIVKSDGNRQFRTAF---VEICKKVGKSELAAAIALYLLYADNEPSAEV 115

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A ++ Q  + ++    + + M P        +L        A     + G    +  +
Sbjct: 116 YGAAADRQQASIVFDVARQMVEMSP--------ALMKRSKLMSATKRIVNYGNAGFYQVL 167

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII-NKSILGFFTELNPNRFWIMTSNT 230
           +    S+         H      +  DE    P+      +  + ++   N    +   T
Sbjct: 168 SAEVGSK---------HGFSISGLVFDEIHTQPNRQLYDVLTKYSSDARQNPLHFII--T 216

Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI-------- 282
              N      F +  +     +            +       +  +++  ++        
Sbjct: 217 TAGNDRHSIAFELHTKAVDILEGRRVDPTFYPVVYGLKDDEDWEDEANWYKVNPSLGYTV 276

Query: 283 ------------------EILGQFPQ-----QEVNNFIPHNYIEEAMS-REAIDDLYAPL 318
                             EI  ++ +         ++IP     +     +         
Sbjct: 277 DIERLRDAYREAKQNPADEITFKWLRMNMWVSSTTSWIPDAIFMKGSEPIDMRLLEGRDC 336

Query: 319 IMGCDIAGEGGDKTVVVFR 337
             G D++  G D T +V  
Sbjct: 337 YAGLDLSSTG-DITALVLI 354


>gi|225686604|ref|YP_002734576.1| type I site-specific deoxyribonuclease, HsdR family protein
           [Brucella melitensis ATCC 23457]
 gi|256043715|ref|ZP_05446638.1| type I site-specific deoxyribonuclease, HsdR family protein
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|256111242|ref|ZP_05452273.1| type I site-specific deoxyribonuclease, HsdR family protein
           [Brucella melitensis bv. 3 str. Ether]
 gi|256262257|ref|ZP_05464789.1| HsdR [Brucella melitensis bv. 2 str. 63/9]
 gi|260564902|ref|ZP_05835387.1| HsdR protein [Brucella melitensis bv. 1 str. 16M]
 gi|265990137|ref|ZP_06102694.1| type I restriction modification enzyme [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265992755|ref|ZP_06105312.1| type I restriction modification enzyme [Brucella melitensis bv. 3
           str. Ether]
 gi|225642709|gb|ACO02622.1| type I site-specific deoxyribonuclease, HsdR family protein
           [Brucella melitensis ATCC 23457]
 gi|260152545|gb|EEW87638.1| HsdR protein [Brucella melitensis bv. 1 str. 16M]
 gi|262763625|gb|EEZ09657.1| type I restriction modification enzyme [Brucella melitensis bv. 3
           str. Ether]
 gi|263000806|gb|EEZ13496.1| type I restriction modification enzyme [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263091973|gb|EEZ16279.1| HsdR [Brucella melitensis bv. 2 str. 63/9]
 gi|326410994|gb|ADZ68058.1| type I site-specific deoxyribonuclease, HsdR family protein
           [Brucella melitensis M28]
 gi|326554285|gb|ADZ88924.1| type I site-specific deoxyribonuclease, HsdR family protein
           [Brucella melitensis M5-90]
          Length = 989

 Score = 46.1 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 81/291 (27%), Gaps = 32/291 (10%)

Query: 11  LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70
            +  L  +L  A  +   +NFV+     G + K L  + Q          AV        
Sbjct: 244 QDILLAGLLAPANLLDLIRNFVVFETIGGRRIKKLARYQQ--------FVAVGKAIERIR 295

Query: 71  NNSNPTIFKCAISAGRGIGKTTLNAWMM--LWLISTRPGMSIICIANSETQLKNTLWAEV 128
              NP      I   +G GK+    ++   L  +      +I+ + +             
Sbjct: 296 TAPNPQRRGGVIHHTQGSGKSLTMVFLATKLRRLPEAENPTIVIVTDRTDLDDQIT---- 351

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR-TYSEERPDTFVGP 187
                       F+    +        + L +++   +    +T    +    P      
Sbjct: 352 ----------GQFQRSGFANPMQAESGDSLRKALSGGAGTTVLTTVHKFHSAVPKRSSVI 401

Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR--RLNGWFYDIFNIPL 245
                + V  DEA         ++        PN   I  + T   + +    + F   L
Sbjct: 402 SKARNVFVMVDEAH---RTQYGALAARMRAGLPNACMIAFTGTPIDKKDRSTREAFGDYL 458

Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
             +       +    +   + E   +R  +D      E+   FP+   +  
Sbjct: 459 HRY-LIDQAVKDGATVPIYY-EMRDARIRIDGRDFEREVRAAFPELSEDEI 507


>gi|255933656|ref|XP_002558207.1| Pc12g14010 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211582826|emb|CAP81028.1| Pc12g14010 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 2009

 Score = 46.1 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/123 (11%), Positives = 32/123 (26%), Gaps = 10/123 (8%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               + +  G GKT      M W    +PG  ++ IA  +  ++  +     +    +  +
Sbjct: 1161 NVLLGSPTGSGKTVAAELAMWWAFREKPGSKVVYIAPMKALVRERVQDWRKRLTRQMGLK 1220

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               E+   +   +    +        +            +                V  D
Sbjct: 1221 -LVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRDYV---------RKVSLVIID 1270

Query: 199  EAS 201
            E  
Sbjct: 1271 EIH 1273


>gi|229604962|ref|YP_002875662.1| putative DNA maturase B [Vibrio phage VP93]
 gi|227977007|gb|ACP44109.1| putative DNA maturase B [Vibrio phage VP93]
          Length = 601

 Score = 46.1 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 40/158 (25%), Gaps = 19/158 (12%)

Query: 28  FKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRG 87
           FKNF    +           F        +    +  +                + A RG
Sbjct: 6   FKNFEDFAY-------VGMRFLGFDL--TDMQADIAQYMQHGPRKKM-------VCAQRG 49

Query: 88  IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT---LWAEVSKWLSMLPHRHWFEMQ 144
             K+TL A   +W +       ++ ++  E Q       +   +  W  +   R      
Sbjct: 50  EAKSTLAALYSVWRLIQDQSTRVLIVSGGEKQASEVATLVIRLIETWDLLCWLRADPARG 109

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182
             + +        L+      S            +R D
Sbjct: 110 DRTSYEGYDVHCDLKPLEKAPSVACVGITAQLQGKRAD 147


>gi|169786958|ref|YP_001708770.1| hypothetical protein p3ABAYE0092 [Acinetobacter baumannii AYE]
 gi|293611291|ref|ZP_06693588.1| predicted protein [Acinetobacter sp. SH024]
 gi|169147119|emb|CAM84782.1| hypothetical protein p3ABAYE0092 [Acinetobacter baumannii AYE]
 gi|292826302|gb|EFF84670.1| predicted protein [Acinetobacter sp. SH024]
          Length = 177

 Score = 46.1 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 39/148 (26%), Gaps = 28/148 (18%)

Query: 77  IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI------ICIANSETQLKNTLWAEVSK 130
            F+ A+  GR  GKT L    M          ++         A +  Q K   W  + +
Sbjct: 36  RFRDAVC-GRRFGKTFLAKAEMRRAARLAAKWNVSVEDEIWYAAPTFKQAKRVFWKRLKQ 94

Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
            +                         +E S+ + S H             D +     +
Sbjct: 95  AIPASW--------------RAGKPNEIECSITLRSGHIIRVVGL------DNYDDLRGS 134

Query: 191 HGMAVFNDEASGTPDIIN-KSILGFFTE 217
               +  DE +    +   + +    + 
Sbjct: 135 GLFFLIIDEWADCKWVAWEEVLRPMLST 162


>gi|126433456|ref|YP_001069147.1| hypothetical protein Mjls_0847 [Mycobacterium sp. JLS]
 gi|126233256|gb|ABN96656.1| conserved hypothetical protein [Mycobacterium sp. JLS]
          Length = 549

 Score = 46.1 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 44/163 (26%), Gaps = 6/163 (3%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
            +  +A+  H  + + ++   + +  +  G G GKT L       L     G  +  +  
Sbjct: 198 EDASDALTEH-QAVILDAIRQLNRVEVRGGAGSGKTFLAMEQARRLAQR--GQRVALVCY 254

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
           S   L + L      W       +  E  +L +                  + +      
Sbjct: 255 S-HGLASYLERIAETWPRRQQPAYVGEFHALGVQWGAPEGPDEAVRTEETVRFWEHDLPL 313

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218
              +        H      +  DEA    D     +L    + 
Sbjct: 314 QMADLAAQLEPGHRFDS--IVVDEAQDFADAWWDPLLAALRDP 354


>gi|146295099|ref|YP_001178870.1| type III restriction enzyme, res subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145408675|gb|ABP65679.1| type III restriction enzyme, res subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 899

 Score = 46.1 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 56/185 (30%), Gaps = 34/185 (18%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P   Q E +  +       ++       +  + A  GIGKT L A+  +         ++
Sbjct: 288 PREAQTEALYWLKKCREEGLD-------RALVVAATGIGKTFLAAFDSIGF------KTV 334

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + +A+ E  L+                     +   ++  +             +     
Sbjct: 335 LFVAHREEILRQ------------------AALSFKTIRSNATIGFFTGDRKETEKDIIF 376

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
            + +T  +E         + +   +  DE         ++I+ +F    P     +T+  
Sbjct: 377 ASVQTLGKEEYLNPTYFSSDYFEYIIIDEFHHAVAKSYQNIINYF---KPKFLLGLTATP 433

Query: 231 RRLNG 235
            RL+ 
Sbjct: 434 ERLDN 438


>gi|41057249|ref|NP_958275.1| hypothetical protein VWBp33 [Streptomyces phage VWB]
 gi|39656072|gb|AAR29723.1| hypothetical protein [Streptomyces phage VWB]
          Length = 536

 Score = 46.1 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/367 (9%), Positives = 79/367 (21%), Gaps = 57/367 (15%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML----------- 99
           P + Q EF+         +       I +  +S  RG GK+     + L           
Sbjct: 18  PTQEQAEFLLRFYEL---HPVTGRRVIHRGLLSRPRGWGKSPFVGAIALAEACADVVADG 74

Query: 100 WLISTRPGMS---------IICIANSETQLKNTLWAEVSKWL-SMLPHRHWFEMQSLSLH 149
           W     P            +   A +E Q  NT    +       L   +  ++    ++
Sbjct: 75  WDAYGEPIGRPWHSVRTPLVRIAAVTEAQTDNTWIPLLEMARGGSLSTDYGLDVLDTVIY 134

Query: 150 PSGWYAELLEQSMGIDSKHYTITCRTYSEER-PDTFVGPHNTHGMAV--------FNDEA 200
                   +  S                 E   ++  G      M            +  
Sbjct: 135 LPRGEISPITSSASSVKGDPACFASLDQTEEWRESNGGIRLAKTMRFNAAKLGGSIIETP 194

Query: 201 SGTPDIINKSILGFFTE--------LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW---- 248
           +               +               +             +   +    +    
Sbjct: 195 NAFTPGEGSVAENSAADYQAIIDGRSRARGILVDHREAPGDTDMSDEQSLVAGLRYAYGD 254

Query: 249 ---KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF---PQQEVNNFIPHNYI 302
                                   ++    D+     ++   F        + ++    +
Sbjct: 255 SSDHPDGCVLHDPPCGPGWSPIERLTGEFWDTSNDPQDLRADFLNQITHASDAWLSQPEV 314

Query: 303 EEAMSREAIDDLYAPLIMGCDIAGEGG----DKTVV--VFRRGNIIEHIFDWSAKLIQET 356
             +     +      +++G D + +      D T +         +  +  W      E 
Sbjct: 315 RASSDLGKVVQPGDRIVLGFDGSRKRSRGVTDATALIGCRLSDGHLFTLGVWEQPPRLEL 374

Query: 357 NQEGCPV 363
             +G PV
Sbjct: 375 GPDGRPV 381


>gi|209542742|ref|YP_002274971.1| Terminase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530419|gb|ACI50356.1| Terminase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 584

 Score = 46.1 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 40/335 (11%), Positives = 86/335 (25%), Gaps = 54/335 (16%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFK---CAISAGRGIGKTTLNAWMMLWLISTRP-- 106
             WQL +   +    ++N  N     F+     ++  RG  KT   AW  L+++      
Sbjct: 87  EDWQLWYFSQLLGWKNANGRNKGKRRFRKGSLWVA--RGNNKTGAGAWFCLYMLLCDGEW 144

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
              +  +     Q  +  +   +  +   P    F+     ++          +      
Sbjct: 145 DPQVYSVGVDRDQASH-TFKAAANQIETNPK--LFKALGAQVYSKFIKGIQNYKG-ENKL 200

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
             +    R  S+            +    F DE    PD +   ++    +       + 
Sbjct: 201 GVFKALARGASKMN--------GLNIHFAFLDELHAYPDRLTYDVIVSGAKKRDQSLVLA 252

Query: 227 TSNTR---RLNGWFYDIF-------NIPLEDWKRYQIDT--------------------R 256
            S         G+    +           +D + +                         
Sbjct: 253 ASTAGLNLDSFGYEDYCYARSVLRQEFDQQDEQFFSCVWEADEGDDPYSEATWEKANPCW 312

Query: 257 TVEGIDSGFHEGIISRYGLDS--DVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314
                   F     S   + S       + L Q+       ++  + ++     +  +D 
Sbjct: 313 NSAIDQLSFRAEAASAKRIPSKRREFFTKNLNQWL-SSGTTWLDMDAVKACYDPDIEEDD 371

Query: 315 YAPL-IMGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348
                I G D+ G   D  V      N I+    +
Sbjct: 372 DYDFGITGIDL-GSRSDLCVYTNVFVNTIDEQLHY 405


>gi|15830852|ref|NP_309625.1| terminase large subunit [Escherichia coli O157:H7 str. Sakai]
 gi|168762543|ref|ZP_02787550.1| putative phage terminase, large subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|217328566|ref|ZP_03444648.1| putative phage terminase, large subunit [Escherichia coli O157:H7
           str. TW14588]
 gi|13361062|dbj|BAB35021.1| putative terminase large subunit [Escherichia coli O157:H7 str.
           Sakai]
 gi|189367154|gb|EDU85570.1| putative phage terminase, large subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|217318993|gb|EEC27419.1| putative phage terminase, large subunit [Escherichia coli O157:H7
           str. TW14588]
          Length = 553

 Score = 46.1 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/261 (12%), Positives = 56/261 (21%), Gaps = 27/261 (10%)

Query: 23  ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82
           E V  F  F        +KG       +   WQ      +             T     +
Sbjct: 43  EVVERFIAFSRV--CPHVKGPMRGRPIELEPWQQFAFACILGFKVKATGRRKYTSAFIEV 100

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
              R   K+T  A +  W +    G   I  A         ++ +  +            
Sbjct: 101 --PRKNAKSTTAAILANWFLIMENGQQDIYTAAVSRDQARIVFDDARQMC--------LL 150

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
            + L    +    +++        K       T     P                DE   
Sbjct: 151 SRPLRRRVNIQAHKVIHPKSNSLLKPLAAKAATIEGTTPS-----------LAIVDEYHL 199

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
            PD    S L       P       + +                D+    +D   V    
Sbjct: 200 HPDNGVYSALELGMGARPEGLLFAITTSGSNVVSACKQHY----DYCCQILDGEEVNESM 255

Query: 263 SGFHEGIISRYGLDSDVARIE 283
                 +     +D     I+
Sbjct: 256 FVLIYELDDESEVDDPAMWIK 276


>gi|218437327|ref|YP_002375656.1| DSH domain protein [Cyanothece sp. PCC 7424]
 gi|218170055|gb|ACK68788.1| DSH domain protein [Cyanothece sp. PCC 7424]
          Length = 1003

 Score = 46.1 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 46/192 (23%), Gaps = 20/192 (10%)

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
                +   +        + A  G GKT L     ++    R G  +             
Sbjct: 21  DQFQKDAIAALDKGKSVVVCAPTGSGKT-LVGEYAIYRALYR-GKRVFYTTP-------- 70

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
           L A  ++       +  F       +P        +  +  D+    +T   +     +T
Sbjct: 71  LKALSNQKCRDFQEK--FGQTPFLDYPVNVGLITGDIVINPDAPIVVMTTEIFRNMLYET 128

Query: 184 FVGPHN---THGMAVFNDEASGTPDI-----INKSILGFFTELNPNRFWIMTSNTRRLNG 235
            +G           V  DE     D        +SI+     +          N   L  
Sbjct: 129 PIGEVGTSLEDVETVVLDECHYISDSGRGTVWEESIIYCPPSIQLVALSATIGNPEELTD 188

Query: 236 WFYDIFNIPLED 247
           W   +       
Sbjct: 189 WINQVRMSTRNR 200


>gi|225683146|gb|EEH21430.1| activating signal cointegrator 1 complex subunit 3 [Paracoccidioides
            brasiliensis Pb03]
          Length = 2011

 Score = 46.1 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 29/125 (23%), Gaps = 14/125 (11%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               + +  G GKT      M W    RPG  ++ IA  +  ++      V  W   L   
Sbjct: 1158 NVLLGSPTGSGKTVAAELAMWWAFRERPGSKVVYIAPMKALVRER----VHDWKRRLTVP 1213

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN--THGMAVF 196
               ++  L                        I       +                 V 
Sbjct: 1214 MGLKLVEL--------TGDNTPDTKTIRDSDIIITTPEKWDGISRSWQTRGYVRQVSLVI 1265

Query: 197  NDEAS 201
             DE  
Sbjct: 1266 IDEIH 1270


>gi|257413762|ref|ZP_04744154.2| prophage LambdaCh01, terminase, large subunit, PBSX family
           [Roseburia intestinalis L1-82]
 gi|257202370|gb|EEV00655.1| prophage LambdaCh01, terminase, large subunit, PBSX family
           [Roseburia intestinalis L1-82]
          Length = 644

 Score = 46.1 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 72/293 (24%), Gaps = 44/293 (15%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
             GRG  K+     +    I   P   I+     +  L+ +++ +  K +        ++
Sbjct: 240 KGGRGSIKSNFWGDLAYETIRQDPQAHIVYTRRYKVDLRGSVYNQFMKTVIRYNDLDNWD 299

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF---NDE 199
            +   +                     T+      +            +   +     DE
Sbjct: 300 FKQSPM------------CAVYKPTGQTVMFVGADKPISLKSFNVPFGYVKLLIHEECDE 347

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG-----WFYDIFNIPLEDWKRYQID 254
            +G       +I   F   +     I   N  +        +  +  N P          
Sbjct: 348 MAGV--EQMDNIEDTFLRSDTPALDIKIFNPPKSKNNFMNQYVEECRNKPQTRICHSYYY 405

Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314
              V+ +   F E             R   LG+        F   + +EE    +A  + 
Sbjct: 406 NVPVKWLGKRFFERAEWFKVHKPLYYRNNYLGEVTGTGGGIF---DNVEERTITDAEIEN 462

Query: 315 YAPLIMGCD----------IAGEGGD-------KTVVVFRRGNIIE--HIFDW 348
              L  G D          +A    D         V   R  N      I ++
Sbjct: 463 LPFLYYGLDFGFEHPQTFEVAYYDEDTDTLYCVSEVFAKRCKNSAFARKIKEY 515


>gi|218508777|ref|ZP_03506655.1| putative phage terminase large subunit [Rhizobium etli Brasil 5]
          Length = 412

 Score = 46.1 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/165 (11%), Positives = 44/165 (26%), Gaps = 16/165 (9%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
            +   R +G TT     ML        +    IA++    +     +V      LP    
Sbjct: 55  VLLKARQLGLTTFIQIFMLDACVFNRDIRAGTIAHTLADAQTIFRDKVKYPFDNLPDG-- 112

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
                  +  +    +  +  + + +        +       T    H +    +     
Sbjct: 113 -------IRAAVPIVKDNQSELLLANNSSIRVGTSLR---SGTLQYLHVSEYGKL----C 158

Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL 245
           +  P+   +   G    +   +   + S      G FY++     
Sbjct: 159 AKYPEKAREVRTGALNTVQAGQLVFIESTAEGQEGHFYNLCEDAQ 203


>gi|91226790|ref|ZP_01261443.1| ATP-dependent RNA helicase SrmB [Vibrio alginolyticus 12G01]
 gi|91188921|gb|EAS75205.1| ATP-dependent RNA helicase SrmB [Vibrio alginolyticus 12G01]
          Length = 407

 Score = 46.1 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 45/318 (14%), Positives = 85/318 (26%), Gaps = 50/318 (15%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           +      + +P + Q E +                       SA  G GKT       L 
Sbjct: 16  EAIEEMGYERPTKIQAEAIPQALDG------------RDILASAPTGTGKTAAFVLPALQ 63

Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
            +   P        I+ +  +         A+ ++ L+     + F +     +      
Sbjct: 64  YLQDFPRRKPGPARILILTPTRELAMQI--ADQARALAKNTKLNIFTITGGVQYQEHADI 121

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
               Q +        +       +               +  DEA    D+     +   
Sbjct: 122 LATTQDI--------VVATPGRLKEYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRL 173

Query: 216 TELNPNRFWIMTSNTR----RLNGWFYDIFNIP---------LEDWKRYQIDTR-TVEGI 261
           +     R   +  +       + G+  D+ N P          E  K  Q   R      
Sbjct: 174 SNECRWRKQTLLFSATLEGKGVEGFTADLLNDPAEIDAKSPLRERKKIAQWYHRADDAEH 233

Query: 262 DSGFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AID 312
                + II++    + V     E L +   Q  +  IP ++I  E    R         
Sbjct: 234 KLELLKHIITQQAERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFR 293

Query: 313 DLYAPLIMGCDIAGEGGD 330
           D    +++  D+A  G D
Sbjct: 294 DGTVNVLLATDVAARGID 311


>gi|170695979|ref|ZP_02887118.1| Terminase [Burkholderia graminis C4D1M]
 gi|170139163|gb|EDT07352.1| Terminase [Burkholderia graminis C4D1M]
          Length = 603

 Score = 46.1 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/227 (11%), Positives = 58/227 (25%), Gaps = 20/227 (8%)

Query: 20  MHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFK 79
            + E      +F              E F     WQ   + ++      + +      + 
Sbjct: 55  WNPEIGQRVIDFFPDVLCLNGGEFEGEPF-HLLDWQKFIVGSLFGWLREDGSRRFREAY- 112

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSI-ICIANSETQLKNTLWAEVSKWLSMLPHR 138
             +  G+G GK+ L A + L+++         +  A +       L+ +    + + P  
Sbjct: 113 --VEGGKGCGKSPLAAGIGLYMMLADNEQRAEVYAAATRRDQAMVLFRDAVAMVQLSPRL 170

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                                       +  +      S+E   +   PH         D
Sbjct: 171 REATTTQGR---------DDRVWNIGHRRSGSFFRPIASDESGQSGPRPH-----CGLID 216

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNT-RRLNGWFYDIFNIP 244
           E     +    +I+    +        M +N+        Y+     
Sbjct: 217 EIHEHRNGTVINIMRAGKKGRRQPLIFMITNSGFDRTSVCYEQHEYA 263


>gi|218704209|ref|YP_002411728.1| putative Terminase, ATPase subunit from bacteriophage origin
           [Escherichia coli UMN026]
 gi|218431306|emb|CAR12184.1| Putative Terminase, ATPase subunit from bacteriophage origin
           [Escherichia coli UMN026]
          Length = 591

 Score = 46.1 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 38/321 (11%), Positives = 81/321 (25%), Gaps = 34/321 (10%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             W  E +     H   N+           I   R IG T   A+             I 
Sbjct: 140 DTWADEHLFEYQKHLRRNIGQQVRN-----ILKSRQIGATWYFAFEAFENAVMTGDPQIF 194

Query: 112 CIANSET----QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
             A+       +      AE    +++  +       +     S         S  +   
Sbjct: 195 LSASKVQAEYFRSYIVNIAEQYFGITLTGNPIRLSNGAELRFLSTNKNTAQSYSGHLYCD 254

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
            Y             + +  H+      F+  ++ T           + + +  R     
Sbjct: 255 EYFWVPNFARLNEVASAMATHDKWRTTYFSTPSAKTHQAYPFWTGEEWKQGSKKRAAARF 314

Query: 228 SNTRRLNGWFYDIFNIPLEDWK-RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
            +   +          P   W+    ++     G +    E + +RY  ++    +  + 
Sbjct: 315 PSFDEMRNGGRLC---PDGQWRYVITMEDAIAGGFNLANIEKLRNRY--NTATFNMLYMC 369

Query: 287 QFPQQEVNNFIPHNYIEEA-----MSREAIDDLYAPL----IMG-CDIAGEGGDKTVVVF 336
            F     ++    + +E         ++   D   P     + G  D A  G D +  V 
Sbjct: 370 VFVD-SKDSVFSFSDLEACGVEVDTWQDHNPDAARPFGDRPVWGGFDPARSG-DLSCFVI 427

Query: 337 RRGN-------IIEHIFDWSA 350
                       +  + +W  
Sbjct: 428 IAPPMYAAEKFRVLKVINWKG 448


>gi|120610299|ref|YP_969977.1| phage terminase [Acidovorax citrulli AAC00-1]
 gi|120588763|gb|ABM32203.1| phage Terminase [Acidovorax citrulli AAC00-1]
          Length = 563

 Score = 46.1 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 39/325 (12%), Positives = 84/325 (25%), Gaps = 61/325 (18%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI-I 111
            WQ   + ++      +        +   I  G+G GK+ L A + L+ ++        +
Sbjct: 54  PWQAFVVGSIFGWYTQDGFRRFSIAY---IETGKGSGKSPLAAGIGLYGLTADGEQRAEV 110

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A ++      L+ +    +++ P      M    L  SG   ++        +  +  
Sbjct: 111 YAAATKRDQAQILFRDAVSMVNLSP------MLQSRLVQSGRDEKVWNLFYPATNGFFRT 164

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
                      +  G           DE           ++    +       +M +N+ 
Sbjct: 165 IA---------SDEGQSGPRPHIGLIDEVHEHTTSTVVEMMLAGRKSRRRALVLMITNSG 215

Query: 232 RLNGWFYDIFN------------------------IPLEDWKRYQIDTRTVEGIDSGFHE 267
                    ++                           + +K      +    +D   H 
Sbjct: 216 SDLNTVCGQYHELGIKVCRGELVNDAIFAFICALDEGEDPFKDEACWAKVNPSLDYKAHG 275

Query: 268 GIISRYGL---------------DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR-EAI 311
                 G                   V R     Q+  Q  + +I  +  ++A  R    
Sbjct: 276 QTDGIPGRRYLREQVHTARGVPAKEAVVRRLNFCQW-TQAESPWIGWDVWKDAQERVPLS 334

Query: 312 DDLYAPLIMGCDIAGEGGDKTVVVF 336
                P + G D++    D T  V 
Sbjct: 335 LLRNRPAVAGLDLSST-TDLTAFVL 358


>gi|312374861|gb|EFR22335.1| hypothetical protein AND_15413 [Anopheles darlingi]
          Length = 1046

 Score = 46.1 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/160 (11%), Positives = 51/160 (31%), Gaps = 15/160 (9%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q + +                     +++AGRG GK+     + +        +++   +
Sbjct: 255 QAKAVAQFIDALAEKQLKPP-----TSLTAGRGRGKSA-AMGLAIAGSIAFGYVNVYVTS 308

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            S   L   L+  + K    L ++   +   +      +   ++  ++  +++       
Sbjct: 309 PSPENLIT-LFEFILKGFDALEYQEHTDYTIIRSTNPDFNKAIIRINITRNNRQTIQYIS 367

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF 214
                  +            +  DEA+  P  + K++LG 
Sbjct: 368 PTDAHLLNAAD--------LLIIDEAAAIPLPMVKAMLGS 399


>gi|48696639|ref|YP_024418.1| terminase [Vibrio phage VP2]
 gi|48696683|ref|YP_024977.1| hypothetical protein VP5_gp02 [Vibrio phage VP5]
 gi|40806146|gb|AAR92064.1| hypothetical protein [Vibrio phage VP5]
 gi|40950037|gb|AAR97628.1| terminase [Vibrio phage VP2]
          Length = 568

 Score = 46.1 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 62/228 (27%), Gaps = 38/228 (16%)

Query: 51  PHRWQLE----FMEAVDVHCHSNV---------NNSNPTIFKCAISA-GRGIGKTTLNAW 96
           P  +Q E     +                    N   P+  K AI    R  GK  + A 
Sbjct: 43  PRGYQEEAYDHILSEHLDFARRKNEALNKGEEFNEPEPSWRKKAIQVLHRRAGKD-IGAL 101

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
            ++ + S     +   I   +TQ ++ +W  +    +                 + +  E
Sbjct: 102 HLIAIASQLRVGNYKHILPYKTQARDAIWDGIDALGNRFIR-------------NAFPDE 148

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT 216
           ++E               TY  +  D+         + +   E++     +   +     
Sbjct: 149 IVESINESRMLVRFTNGSTYQLQGGDSDKLV-GAGPVGIVYSESALMSPNVRTFLRPML- 206

Query: 217 ELNPNRFWIMTSNTRRLNGWFYD--IFNIPLEDWK----RYQIDTRTV 258
             +    W +   T R   WFY   +     E+W           R  
Sbjct: 207 --DETGGWELHITTPRGKNWFYKLAMHAEKSEEWYYKYLTINDTWRWA 252


>gi|46205020|ref|ZP_00209667.1| COG0495: Leucyl-tRNA synthetase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 231

 Score = 46.1 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 60/231 (25%), Gaps = 29/231 (12%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTR------PG 107
           QL  +EA  +H         P  +   A+  GRG GKT   A  +  L          P 
Sbjct: 12  QLRLLEADWLHRARADQLPPPGHWTTWAVIGGRGSGKTRTGAEWVRGLALGDPVFTDAPV 71

Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
             I  I  +   +++ +    S  L++                 G    + + S     +
Sbjct: 72  GRIALIGETFADVRDVMIEGPSGLLALPRL--------------GGAVPVWQPSRR---R 114

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWI 225
                         +           A ++DE +     +     I          R  +
Sbjct: 115 VVFGNGAVALAFSAEEPDSLRGPQFGAAWSDEVAKWREAEAAYDMIQFGLRLGRHPRGLV 174

Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLD 276
               T R       +   P              + +   F E ++ RY   
Sbjct: 175 T--TTPRPVPLIRRLLADPRT-VVTRSRTADNADNLAPLFLEEVVGRYAGT 222


>gi|319642230|ref|ZP_07996889.1| terminase large subunit [Bacteroides sp. 3_1_40A]
 gi|317386086|gb|EFV67006.1| terminase large subunit [Bacteroides sp. 3_1_40A]
          Length = 482

 Score = 46.1 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 76/280 (27%), Gaps = 12/280 (4%)

Query: 58  FMEAVDV-HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
           F++ V         + S   I++ A+S     GK+ +++  + W++   P  S++     
Sbjct: 48  FLKKVAEAFMRVYESYSAGIIYRLAVSMPPRAGKSYISSLFIAWMLGHFPEESVM----- 102

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
                +TL+ ++S     +     F      ++  G    +   ++    +         
Sbjct: 103 RNCCSDTLYNKLSYDARDIVKSKRFHEIFPDIYLKGDKQNVKSWNVEGARQVSYFGGGVG 162

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP---NRFWIMTSNTRRL 233
                        T  +    ++A    +          T  +    N   I        
Sbjct: 163 GTVIGFGASMLAMTDDLYKSLEDALSDNNNEKVWSWKQGTHDSRIEGNCCLIDIGTRWSA 222

Query: 234 NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF---PQ 290
           N     +      +           E               L S+      + ++   P 
Sbjct: 223 NDVLGRLEEAGKYNEIIRIAALDENERSFCEDVHTTEYYLELRSETDESIWMAEYMQEPF 282

Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGD 330
           +      P + +      +        +I  CD A +G D
Sbjct: 283 EAKGLLFPKSSLMRFKLADIAGKRPDGVIGACDTADKGDD 322


>gi|238926382|ref|ZP_04658142.1| conserved hypothetical protein [Selenomonas flueggei ATCC 43531]
 gi|238885786|gb|EEQ49424.1| conserved hypothetical protein [Selenomonas flueggei ATCC 43531]
          Length = 760

 Score = 46.1 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 63/196 (32%), Gaps = 16/196 (8%)

Query: 43  KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102
            P  +   P+R QL+ + A+D     N        +   +    G GKT   +  +L   
Sbjct: 17  LPGSNTRHPYRHQLDALCALDRMDEENA------SYSTLVVLPTGGGKTYTASTWLLRHA 70

Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
             +    I+ +A+     +  L  + ++      +       S   +     +   ++++
Sbjct: 71  LDKK-KKILWLAH-----RQMLLDQAAESFQKFAYTAEIPHISSFRYRIVSGSSNHDKTI 124

Query: 163 GIDSKHYTITCRTYSEERPDTFVG----PHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218
            ID K   +     S  R              + + +  DEA  +     + ++ +  + 
Sbjct: 125 NIDPKDDLLIISKDSIGRASNLARLAPWLAGENEIFLIVDEAHHSTAKTYRRVIDYVKDK 184

Query: 219 NPNRFWIMTSNTRRLN 234
             +   I  + T    
Sbjct: 185 VEHVKLIGLTATPFRT 200


>gi|168009604|ref|XP_001757495.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691189|gb|EDQ77552.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 2180

 Score = 46.1 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 42/152 (27%), Gaps = 15/152 (9%)

Query: 57   EFMEAVDVHCHSNVNNSNPTIFK----CAISAGRGIGKTTLNAWMMLWLISTRP-GMSII 111
            E +     H +       P ++       ++A  G GKT    + +L ++     G   +
Sbjct: 1348 EVLYQKFRHFNPIQTQVFPVLYNTDDNVLVAAPTGSGKTICAEFAVLRMLQKGEAGGRCV 1407

Query: 112  CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             IA  E   K  L    SK+   L  R        +          +  S     + + +
Sbjct: 1408 YIAPVEALAKERLRDWESKFGRTLGVRVVELTGETATDMKLLEKGQIIIS---TPERWDV 1464

Query: 172  TCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
              R +           H         DE    
Sbjct: 1465 LSRRWK-------QRKHVQQVSLFVVDELHLI 1489


>gi|301386048|ref|ZP_07234466.1| hypothetical protein PsyrptM_25573 [Pseudomonas syringae pv. tomato
           Max13]
 gi|302060830|ref|ZP_07252371.1| hypothetical protein PsyrptK_12639 [Pseudomonas syringae pv. tomato
           K40]
 gi|302129770|ref|ZP_07255760.1| hypothetical protein PsyrptN_00140 [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 684

 Score = 46.1 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 32/295 (10%), Positives = 65/295 (22%), Gaps = 28/295 (9%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA--NSETQLKNTLWAEVSKWLSM-LPHR 138
           I   R +G T   A              +   A        ++ + A    W  + L   
Sbjct: 177 ILKSRQVGLTYYFAGEAFMDAVLTGDNQVFLSASRAQSEIFRSYIIAFAQAWFGLELTGN 236

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT----CRTYSEERPDTFVGPHNTHGMA 194
                +         +      +      H  +      R + +          +     
Sbjct: 237 PIVLSKDGKPWAELRFLSTNSSTAQGHHGHVYVDEYFWIRDFEKLNTVASAMATHKKWRK 296

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254
            +    S           G     +  +      +    +         P   W++    
Sbjct: 297 TYFSTPSAVSHQAYPFWQGEKFRNSKRK---AAKDPWPSDKQISAGALCPDGQWRKVITI 353

Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR------ 308
              + G    F    +     D D  +   + +F     + F     +E   S       
Sbjct: 354 LDAIAGGCDLFDLEQLQLEYDD-DKFQQLFMCKFIDSSQSAF-SLADLERCYSDLSLWAD 411

Query: 309 ----EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGN------IIEHIFDWSAKLI 353
               +      +P+ +G D +    D T VV            I     W  +  
Sbjct: 412 FDPDDPRPYGNSPVWIGYDPSRTRDDATCVVIAPPLENGGKFRILEKHSWRGQSF 466


>gi|295839099|ref|ZP_06826032.1| phage terminase, large subunit [Streptomyces sp. SPB74]
 gi|295827320|gb|EDY42481.2| phage terminase, large subunit [Streptomyces sp. SPB74]
          Length = 592

 Score = 45.7 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 67/278 (24%), Gaps = 31/278 (11%)

Query: 51  PHRWQ-LEFMEAVD--VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR-- 105
           P  WQ    +  +   VH           I +  +   R  GKTTL   + L+++     
Sbjct: 95  PDPWQVAYILAPIFGWVHWDDGAGMYVRIIREAYVDVPRKNGKTTLGGGIALYMMGGDGE 154

Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
           PG  +I  A ++ Q +  L+  V   +   P          S           +      
Sbjct: 155 PGAQVITAAVTKEQAR-LLYGPVKAIVEKSPALSRVMQPLASAILHPKTDSYFKP----- 208

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPNRFW 224
                                 H  +      DE        + ++I            +
Sbjct: 209 --------------VSSLAGAQHGLNLHCGLVDELHEHKTPELVETIESGTGSRRQPLIF 254

Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
           I+   T    G    ++    E  ++          +                +  +   
Sbjct: 255 II---TTADAGKRESVYQRKRERVEQLARGAYRAPSVYGVVFAAEKDDDPFAEETWKKAN 311

Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGC 322
            G                E+A    A    +  L +G 
Sbjct: 312 PG--YGVSPTRAYLRTAAEKAQQSPAELASFLRLHLGI 347


>gi|239621737|ref|ZP_04664768.1| phage protein [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|239514928|gb|EEQ54795.1| phage protein [Bifidobacterium longum subsp. infantis CCUG 52486]
          Length = 470

 Score = 45.7 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 37/333 (11%), Positives = 82/333 (24%), Gaps = 52/333 (15%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P +WQ   +E            ++           R  GK  +  +  L+L +   GM I
Sbjct: 19  PDKWQRIVLEGWLATDSKLQWAASDCGCAV----PRQNGKNAILEFTELYLAAIL-GMKI 73

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           +  A+     +      +  +                +  +     ++ ++         
Sbjct: 74  LHTAHEVKTCRKHFLR-MKYYFENARKFPELAELVTYIRATNGQEAIVLKN----GGSIE 128

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN- 229
              R+ S                 +  DEA    D   ++I    +         + +  
Sbjct: 129 FIARSKSSG--------RGFTVDVLVCDEAQELTDEQMEAIQPAISSAPSGNPLTIYTGT 180

Query: 230 ----------------------TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267
                                   +   WF        +   + +   R    + +   +
Sbjct: 181 PTPPTSPGTVFARMRRNAHRDKPPKNLCWFEWAATEIGDVHDQQRW-YRYNPSLGTRLLK 239

Query: 268 GII--SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
            ++      +  D    E LG +  Q        +  E A  +     +          +
Sbjct: 240 SVVVSESEKMTPDGFARERLGWWNDQA-GALSDIDVDEWAKCKTDKPCMDGYNSYAVKFS 298

Query: 326 GEGGDKT-VVVFR------RGNIIEHIFDWSAK 351
            +G + T V   R          +E I   S +
Sbjct: 299 ADGANVTLVACVRPPRKSSELPHVEVIASRSMR 331


>gi|308808280|ref|XP_003081450.1| putative RNA helicase [Oryza sativa (ISS) [Ostreococcus tauri]
 gi|116059913|emb|CAL55972.1| putative RNA helicase [Oryza sativa (ISS) [Ostreococcus tauri]
          Length = 734

 Score = 45.7 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/315 (10%), Positives = 70/315 (22%), Gaps = 51/315 (16%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGR--------GIGKTTLNAWMMLWLISTRPG 107
            E +         +   +        + +GR        G GKT       L  I ++P 
Sbjct: 332 KELLRVTANFQKPSPIQAQSWP---IVMSGRDMVGIAATGSGKTLAFGMPALTQIRSQPP 388

Query: 108 MS-----IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
                   + +A +    + T              R          +         + +M
Sbjct: 389 CKPGQPICLVLAPTRELAQQTA-KVFDDAGEASGVRCVCVYGGAPKYEQ-------KNAM 440

Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS---ILGFFTELN 219
                   I                       +  DEA    D+  +     +   T  +
Sbjct: 441 KAGGGAAVIVATPGRLRDFMEEGVIKLDRVTMLVLDEADRMLDLGFEPEIRAIAGATRAD 500

Query: 220 PNRFWIMTSNTRRLNGWFYDIF-----------NIPLEDWKRYQIDTRTVEGIDSGFHEG 268
                   +    +     +              +         ++    +  D      
Sbjct: 501 RQTVMFSATWPMSVQSLASEFMCNPVRVRIGSEGLKASQSITQIVEVVEPQDKDRHLARV 560

Query: 269 IISRYGLDSDVARIEILGQFPQQEVN-----------NFIPHNYIEEAMSREAI--DDLY 315
           +    G   D  R  I G + ++  N             I  +  +    R         
Sbjct: 561 MKQYLGSPKDCPRTLIFGLYKKECANLHQRLSREWPAVCIHGDMSQADRERSVEAFKKGT 620

Query: 316 APLIMGCDIAGEGGD 330
           + +++  D+A  G D
Sbjct: 621 SRILIATDVAARGLD 635


>gi|21673961|ref|NP_662026.1| ATP-dependent RNA helicase SrmB, putative [Chlorobium tepidum TLS]
 gi|21647103|gb|AAM72368.1| CRISPR-associated helicase Cas3 [Chlorobium tepidum TLS]
          Length = 668

 Score = 45.7 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 61/231 (26%), Gaps = 17/231 (7%)

Query: 8   DQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCH 67
           + +  +     +  A     F   +      G    P+         + E +      C 
Sbjct: 117 NPETSELRPNGVDLAMLKERFDQHMSLK-ESGASDTPVNRA------RKEILRE----CR 165

Query: 68  SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127
               +  P +F   +    G GKT  +    L          II +    + ++ T    
Sbjct: 166 QKGVSLEPGLFSLTV--PTGGGKTLASMAFALEHALKHDKKRIIVVIPYTSIIEQTAAVY 223

Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187
              +       H   +      P+   A     +  I + +       +   R       
Sbjct: 224 REVFGDDAVLEHHSNLDPSRETPASRLATENWDAPIIVTTNVQFFESLF-AARSSACRKL 282

Query: 188 HNTHGMAVFNDEASGTPDIINKSI---LGFFTELNPNRFWIMTSNTRRLNG 235
           HN     V  DEA   P    + I   +   +        + T+    L+G
Sbjct: 283 HNIVNSVVVLDEAQMLPTDFLQPIVSVIKMLSAHFRTSVVLCTATQPVLSG 333


>gi|157693524|ref|YP_001487986.1| terminase large subunit [Bacillus pumilus SAFR-032]
 gi|157682282|gb|ABV63426.1| terminase large subunit [Bacillus pumilus SAFR-032]
          Length = 437

 Score = 45.7 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 76/265 (28%), Gaps = 39/265 (14%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           +  G G  K+   A  ++ L       + + I       + + ++ + + +S L   H  
Sbjct: 27  LVGGYGSSKSYHIALKLI-LKLLEEKRTALVIREVYDTHRESTFSLLQEIVSDLGIDHVV 85

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
           + +S  L            ++   +    +       E           +   ++ +E S
Sbjct: 86  KCRSSPL------------ALTFRNGSSILFKGLDKPE-----KLKSINNISIIWIEECS 128

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL---------------- 245
                  K +LG     +   + ++++N    + W Y  F                    
Sbjct: 129 EVSYEGFKELLGRLRHPSLPLYMMLSTNPVGQDNWTYRHFFRDEQLKRFVLDDETLYKKR 188

Query: 246 ----EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301
               +D   +         +   + + +      D D+ RI   G F       F     
Sbjct: 189 TVVIKDTYYHHSTAEDNLFLPKSYVKQLDELKEYDPDLYRIARKGYFGINGTKVFPQFEV 248

Query: 302 IEEAMSREAIDDLYAPL-IMGCDIA 325
              A   EAI  +  PL   G D  
Sbjct: 249 RNHADVLEAIQQMDRPLKRAGMDFG 273


>gi|228947364|ref|ZP_04109656.1| Terminase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228812305|gb|EEM58634.1| Terminase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 488

 Score = 45.7 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 55/189 (29%), Gaps = 26/189 (13%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL--ISTRPGMS 109
             WQ  F+ A     H              ++  R  GK+TL++ + L+L       G  
Sbjct: 106 ELWQQAFLAATFGFVHKIDGTRKYREAFLVVA--RKNGKSTLSSGICLYLQVADGEGGSE 163

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           +  +A  E Q K  +W+E  + +   P        +LS        EL         K  
Sbjct: 164 VYAVATKEQQAK-IVWSESKRMVKKSP--------ALSKRIKTLVKELTADFNDSVLKPV 214

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK--SILGFFTELNPNRFWIMT 227
                T            H         DE     D       + G      P    I T
Sbjct: 215 GSDSDTLDGLN------VHGAS-----LDEIHAWKDKNLYDVIVDGTSAREQPLILMITT 263

Query: 228 SNTRRLNGW 236
           + T R + +
Sbjct: 264 AGTVRESVY 272


>gi|325661335|ref|ZP_08149961.1| hypothetical protein HMPREF0490_00694 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472284|gb|EGC75496.1| hypothetical protein HMPREF0490_00694 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 447

 Score = 45.7 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/208 (12%), Positives = 58/208 (27%), Gaps = 24/208 (11%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             I A R   K+ + A         +PG  I+  + +  Q K  +  ++   L       
Sbjct: 72  VCIVACRAASKSFIIALYACCKAIIKPGSKIVLGSATRGQSKLIISEKIKNEL------- 124

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                   ++ S      ++      ++         + +                  +E
Sbjct: 125 --------MNMSPALRREIKDIKDSANESIVYFRNGSTIKVFTANEFARGLRSTDAVREE 176

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
                  I+ S++  F  +    F I           FY+      ED K   I +  ++
Sbjct: 177 FRQIDKNIDDSVISPFQTIRQAPFMI---------DPFYEGIECLKEDPKDIYISSSWLD 227

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQ 287
                ++    +   + +D   + +   
Sbjct: 228 DGHWMWNLVDQAYTDMLNDRPSVMLAFD 255


>gi|325095254|gb|EGC48564.1| DEAD/DEAH box helicase [Ajellomyces capsulatus H88]
          Length = 1824

 Score = 45.7 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/215 (9%), Positives = 62/215 (28%), Gaps = 22/215 (10%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           +P +WQ E ++ +D +                + A    GKT ++ + M  ++       
Sbjct: 759 EPDKWQREVLDEIDAN------------RSLFVVAPTSAGKTFISFYAMKKILEEDYNSV 806

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           ++ +A ++  +        +++     H         ++H   +          + +  +
Sbjct: 807 LVYVAPTKALVSQVAAEIQARFSKSFKHGGMSVW---AIHTRDYRINNPTGCQILVTVPH 863

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN---RFWIM 226
            +     +    +++    +     +  DE      + +  +      L P         
Sbjct: 864 ILQIMLLAPANANSW----SPRVKRIIFDEIHCIGQVDDGVVWEQLLLLAPCPVIALSAT 919

Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI 261
             N +  + W          D    +   R  +  
Sbjct: 920 VGNPQEFSNWLRMTQMENGIDLTTIEHRHRYSDLR 954


>gi|255280370|ref|ZP_05344925.1| CRISPR-associated helicase Cas3 domain protein [Bryantella
           formatexigens DSM 14469]
 gi|255268835|gb|EET62040.1| CRISPR-associated helicase Cas3 domain protein [Bryantella
           formatexigens DSM 14469]
          Length = 715

 Score = 45.7 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/176 (10%), Positives = 45/176 (25%), Gaps = 10/176 (5%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +  HC          +F+  +    G GKT  +    L          +I +    + +
Sbjct: 218 EILKHCMEMGEADKG-LFRLTV--PTGGGKTIASLAFALKHAEKHHMERVIYVIPYTSII 274

Query: 121 KN--TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
           +    ++AE+    ++L +    + +                   +          +   
Sbjct: 275 EQNAKVFAEILGRENVLENHCNIDYELDEE-LRPMQLAAENWDKPVIVTTNVQFFESLFS 333

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDI----INKSILGFFTELNPNRFWIMTSNT 230
            +       HN     +  DEA   P+        ++         +      +  
Sbjct: 334 NKSSRCRKLHNMANSVIIFDEAQMLPNDYLKPCIAAMEQLLRYYRSSIVLCTATQP 389


>gi|269836053|ref|YP_003318281.1| hypothetical protein Sthe_0020 [Sphaerobacter thermophilus DSM
           20745]
 gi|269785316|gb|ACZ37459.1| conserved hypothetical protein [Sphaerobacter thermophilus DSM
           20745]
          Length = 497

 Score = 45.7 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 47/348 (13%), Positives = 77/348 (22%), Gaps = 69/348 (19%)

Query: 26  LSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAG 85
                F    FP            +P R+Q E M AV     +             I   
Sbjct: 15  ADPVAFARALFP----------SRRPRRYQAEPMRAVAAAVVARARGDRSHPADFGIVFS 64

Query: 86  RGIGKTTLNAWMMLWL--ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           R  GK    A ++ +L  +  R G SI+    +                  L  +     
Sbjct: 65  RQAGKDEALAQLIAYLLTLFQRAGGSIVVALPT------------------LRPQGILAR 106

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV-GPHNTHGMAVFN-DEAS 201
             L    +   A  L     +         R                     +   +E  
Sbjct: 107 DRLIERLTCERARALGLRPRVQDGTIVRLGRAACHFVSAGPQSNARGQTASLLLVANECQ 166

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL-----EDWKRYQIDT- 255
                   S+              M +           + ++          + +++   
Sbjct: 167 DIRPERWDSVFAPMAASTDAVTLSMGTVWTADTLLARQMRHLAALEAEDGRRRLFRVPWQ 226

Query: 256 ---RTVEGIDSGFHEGIISRYGLDSDVARIEIL--------GQFPQQEVNNF-------- 296
              + V      + E  I+  G D    R E          G FP               
Sbjct: 227 VVAQEVPSY-GRYVERQIALLGADHPFIRTEYELLELDGQGGLFPPSRQGQMQGDHPPLT 285

Query: 297 --IPHN----YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
             +P       ++ A   E   D         D A    D T +   R
Sbjct: 286 RAVPGEEYALLLDVAGEEEESVDPGRAY----DPAAR-RDSTALTVVR 328


>gi|29028647|ref|NP_803336.1| terminase-large subunit [Staphylococcus phage phi 12]
 gi|18920571|gb|AAL82311.1| terminase-large subunit [Staphylococcus phage phi 12]
          Length = 453

 Score = 45.7 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 45/315 (14%), Positives = 83/315 (26%), Gaps = 58/315 (18%)

Query: 85  GRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
           GR  GKTT  + +  + +S     G  I  +AN   Q +  L+ E    +   P      
Sbjct: 2   GRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKASP------ 54

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
                        +L E    +  + +     +    +          +      DE   
Sbjct: 55  -------------KLRENFRPLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHE 101

Query: 203 TPD-IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT---- 257
             D  +   I              +T+   +L+G   ++     +   R   D RT    
Sbjct: 102 FKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVNMVEAGRDTLDRIIEDERTFYYL 161

Query: 258 ------------------VEG----IDSGFHEGIISRYGLDSDV---ARIEILGQFPQQE 292
                                    ID    +    +     D       +    F   +
Sbjct: 162 ASLDDDDDINDSSNWIKANPNLGVSIDLAEMKEEWEKAKRTPDERGDFITKRFNIFANND 221

Query: 293 VNNFIPHNYIEEAMS-REAIDDLYAPLIMGCDIAGEGGDKTV----VVFRRGNIIEHIFD 347
             +FI +  +++        +    P  +G D++    D T          G +      
Sbjct: 222 EMSFIDYPTLQKNNDIISLDELEGRPCTIGYDLSET-EDFTAACATFALDNGKVAVLTHS 280

Query: 348 WSAKLIQETNQEGCP 362
           W  K   E + E  P
Sbjct: 281 WIPKHKVEYSNEKIP 295


>gi|327399853|ref|YP_004346884.1| type III restriction-modification system restriction subunit
           [Lactobacillus amylovorus GRL 1112]
 gi|327182523|gb|AEA32958.1| type III restriction-modification system restriction subunit
           [Lactobacillus amylovorus GRL 1112]
          Length = 896

 Score = 45.7 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 55/333 (16%), Positives = 109/333 (32%), Gaps = 33/333 (9%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKN-FVMRFFPWGIKGKPLEHFSQPHRWQLEFM 59
           M R  +     +Q+   M    E V S    F    + W         + +   WQL+++
Sbjct: 1   MGRKSNQVPVEDQKFPLMNQAQEAVRSIGYKFPSFHYLWENLKHEFRLYQKTALWQLDWV 60

Query: 60  EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
           E      ++N + +N  +F  A     G GKT + A  +L+        + + ++ S   
Sbjct: 61  EN-----NTNTDINNHLMFHMA----TGSGKTDIMAATILYFYKKYKYTNFLFVSTSNAV 111

Query: 120 L----KNTLWAEVSKWLSMLP---HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           +     N L +  SK+L   P   + H  +++ +S  P+   +      + + +     +
Sbjct: 112 INKTRDNFLNSNSSKYLFKAPIIINGHQVDVKEVSTFPTSGVS--NTIYLKLTTIEGLYS 169

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR- 231
                 +   +F        M +  DEA          +            W    NT  
Sbjct: 170 EIKSPRQDGLSFEDLK-DQPMIILADEAHH--------LNAKTKSKGKQIEWDTWENTID 220

Query: 232 --RLNGWFYDIFNI-PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
             R               D  +  I  +    I   +    +   G    V R+E     
Sbjct: 221 QVRNANSKNRQLEFTATIDVNQRNIYEKYKNKIIYKYDLDHLMEDGYSKKVFRLEANNDN 280

Query: 289 PQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMG 321
            Q+ +N  +  +   + ++RE     + P+I+ 
Sbjct: 281 RQKLLNAVL-LSEYRKRLARELNISDFKPVILA 312


>gi|269964515|ref|ZP_06178755.1| Superfamily II DNA and RNA helicase [Vibrio alginolyticus 40B]
 gi|269830752|gb|EEZ84971.1| Superfamily II DNA and RNA helicase [Vibrio alginolyticus 40B]
          Length = 403

 Score = 45.7 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 45/318 (14%), Positives = 85/318 (26%), Gaps = 50/318 (15%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           +      + +P + Q E +                       SA  G GKT       L 
Sbjct: 16  EAIEEMGYERPTKIQAEAIPQALDG------------RDILASAPTGTGKTAAFVLPALQ 63

Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
            +   P        I+ +  +         A+ ++ L+     + F +     +      
Sbjct: 64  YLQDFPRRKPGPARILILTPTRELAMQI--ADQARALAKNTKLNIFTITGGVQYQEHADI 121

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
               Q +        +       +               +  DEA    D+     +   
Sbjct: 122 LATTQDI--------VVATPGRLKEYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRL 173

Query: 216 TELNPNRFWIMTSNTR----RLNGWFYDIFNIP---------LEDWKRYQIDTR-TVEGI 261
           +     R   +  +       + G+  D+ N P          E  K  Q   R      
Sbjct: 174 SNECRWRKQTLLFSATLEGKGVEGFTADLLNDPAEIDAKSPLRERKKIAQWYHRADDAEH 233

Query: 262 DSGFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AID 312
                + II++    + V     E L +   Q  +  IP ++I  E    R         
Sbjct: 234 KLELLKHIITQQAERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFR 293

Query: 313 DLYAPLIMGCDIAGEGGD 330
           D    +++  D+A  G D
Sbjct: 294 DGTVNVLLATDVAARGID 311


>gi|326435438|gb|EGD81008.1| ASCC3L1 protein [Salpingoeca sp. ATCC 50818]
          Length = 2150

 Score = 45.7 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 55/210 (26%), Gaps = 20/210 (9%)

Query: 57   EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
            ++  A+     + + +S+  +F   + A  G GKT      ML   S  P    I +A  
Sbjct: 1325 KYFNAIQTQVFNALYDSDDNVF---VGAPTGSGKTVCAELAMLRSFSQNPNAKCIYVAP- 1380

Query: 117  ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
               L+      +  W  M        +  L+   S       +  +   +     T   +
Sbjct: 1381 ---LQEVCNRMLPAWKEMFGKGLGKTVVGLTGDMSA------DLKLLASANVVVATPEQW 1431

Query: 177  SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL-------GFFTELNPNRFWIMTSN 229
                       H  +      D+A          +           ++L      IM + 
Sbjct: 1432 DVLSRRWKQRRHVQNIALFIVDDAHMIGAENGPVLEIVCARMRYMASQLERRLRTIMLAV 1491

Query: 230  TRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
                         +   +   +    R V 
Sbjct: 1492 PVANAREMGSWCGVSGSNVFNFHPTVRPVP 1521


>gi|288560035|ref|YP_003423521.1| DEAD/DEAH box helicase domain-containing protein
           [Methanobrevibacter ruminantium M1]
 gi|288542745|gb|ADC46629.1| DEAD/DEAH box helicase domain-containing protein
           [Methanobrevibacter ruminantium M1]
          Length = 808

 Score = 45.7 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 55/193 (28%), Gaps = 34/193 (17%)

Query: 43  KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102
            P E   +P   Q+E + A++       +       K  + A  GIGKT L A+  +   
Sbjct: 192 TPSETLFEPRGPQIEALYALERSREEGFD-------KALVVAATGIGKTYLAAFDSI--- 241

Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
                  ++ IA+ E         E+ K  +      +        +             
Sbjct: 242 ---KYKKVLFIAHRE---------EIIKQAAKSFKNVFPTKTIGFFYNQ---------HK 280

Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222
             D        +T  +                +  DE         K IL +F    P  
Sbjct: 281 QTDKDMIFSLVQTLGKSSYLNDSYFKRDEFDYIVVDEFHHAVANNYKKILDYF---KPKF 337

Query: 223 FWIMTSNTRRLNG 235
              +T+   RL+ 
Sbjct: 338 LLGLTATPERLDN 350


>gi|164687371|ref|ZP_02211399.1| hypothetical protein CLOBAR_01012 [Clostridium bartlettii DSM
           16795]
 gi|164603795|gb|EDQ97260.1| hypothetical protein CLOBAR_01012 [Clostridium bartlettii DSM
           16795]
          Length = 1119

 Score = 45.7 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 66/246 (26%), Gaps = 29/246 (11%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q E + AV                KC I AG G GKT ++  ++  L       +I+
Sbjct: 346 RYYQKEAIIAVCEAFDRKQ-------RKCLIVAGTGTGKTRISVSLVDILTRHNFAKNIL 398

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +A+ +  +K       SK L  LP  +  +      +    ++        ID      
Sbjct: 399 FLADRKELVKQA-KNSFSKLLPDLPLCNLLDKSEDPENARMVFSTYPTMVNAIDDTKTKD 457

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEAS--------GTPDIINKSILGFFTELNPNR- 222
             R ++             H   +  DE+            +  + ++LG          
Sbjct: 458 GKRLFTPG-----------HFDLIIIDESHRSIYRKYQTIFEYFDANLLGLTATPKDEID 506

Query: 223 -FWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR 281
                  +       +   F   +ED       T  V+                D +   
Sbjct: 507 KNTYSIFDLENKVPTYAYEFQQAVEDGYLVSYKTIEVKTDIMENGIKYDELSDEDKEQYE 566

Query: 282 IEILGQ 287
                 
Sbjct: 567 STFEND 572


>gi|157113448|ref|XP_001657833.1| hypothetical protein AaeL_AAEL006469 [Aedes aegypti]
 gi|108877720|gb|EAT41945.1| conserved hypothetical protein [Aedes aegypti]
          Length = 1005

 Score = 45.7 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/160 (11%), Positives = 51/160 (31%), Gaps = 15/160 (9%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q + +                     +++AGRG GK+     + +        +++   +
Sbjct: 255 QAKAVAQFIDALAEKQLKPP-----TSLTAGRGRGKSA-AMGLAISAAIAFGYVNVYVTS 308

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            S   L   L+  + K    L ++   +   +      +   ++  ++  +++       
Sbjct: 309 PSPENLIT-LFEFIMKGFDALEYQEHTDYTIIRSTNPDFNKAIIRINITRNNRQTIQYIS 367

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF 214
                  +            +  DEA+  P  + K++LG 
Sbjct: 368 PSDAHLLNAAD--------LLIIDEAAAIPLPLVKAMLGP 399


>gi|157123248|ref|XP_001660079.1| hypothetical protein AaeL_AAEL009460 [Aedes aegypti]
 gi|108874431|gb|EAT38656.1| conserved hypothetical protein [Aedes aegypti]
          Length = 1557

 Score = 45.7 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 43/157 (27%), Gaps = 10/157 (6%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              +    G+GKT + A +M  L    P   +I +A +           V++ +      
Sbjct: 94  NTLVVLPTGLGKTFIAAVVMYNLYRWYPTGKVIFMAPTR--------PLVNQQIEACYKI 145

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                +  +   +G         +    + + +T +    +               V  D
Sbjct: 146 MGIPKEDTAE-MTGKQQRKNRTGLWQSKRVFYVTPQVVLADINSPEQNFPINEVKLVVVD 204

Query: 199 EASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
           EA           ++      N N   +  S T    
Sbjct: 205 EAHKAKGRYAYTEVIKAIASTNRNFRVLALSATPGRT 241


>gi|332534743|ref|ZP_08410571.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332035830|gb|EGI72314.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 408

 Score = 45.7 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/196 (10%), Positives = 40/196 (20%), Gaps = 15/196 (7%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-----SII 111
           +                         SA  G GKT       +  +   P        ++
Sbjct: 18  KMGYETPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAIQYLLDFPRRDPGFARVL 77

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +  +           + +   +L  R       L +                +  +  +
Sbjct: 78  VMTPTRELAYQ-----IHEQCELLAKR-----THLKIGVVTGGINYGTHKEIFEKNNDIL 127

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
                           H  H   +  DEA    D+  K  +    +   NR      +  
Sbjct: 128 IATPGRLMEYLETENFHAEHVEMLIIDEADRMLDMGFKKEMSRICDEAKNRRQCFLFSAT 187

Query: 232 RLNGWFYDIFNIPLED 247
                        L D
Sbjct: 188 LEGDSVERFAEKTLND 203


>gi|317034954|ref|XP_001400800.2| DEAD/DEAH box helicase [Aspergillus niger CBS 513.88]
          Length = 1876

 Score = 45.7 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 63/222 (28%), Gaps = 28/222 (12%)

Query: 50   QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
            +P RWQ E ++ +D                  + A    GKT ++ + M  ++ +     
Sbjct: 809  EPDRWQREILDQIDAKAS------------LFVVAPTSAGKTFISFYAMKQVLESSDDGV 856

Query: 110  IICIANSETQLKNT---LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
            ++ +A ++  +      + A  SK         W          +    ++L        
Sbjct: 857  LVYVAPTKALVNQIAAEVQARFSKNYKHAGKSVWAIHTRDYRINNPTSCQILITV----- 911

Query: 167  KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
              + +     +     ++     +    +  DE        +  +      L P     +
Sbjct: 912  -PHILQIMLLAPSNAKSW----ASRIQRIIFDEIHCIGQSDDGVVWEQLLLLAPCPIIAL 966

Query: 227  ---TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265
                 N    N W     N    D K  +  TR  +     +
Sbjct: 967  SATVGNPEEFNDWLRLTQNANGHDLKMIEHKTRWSDLRKFEY 1008


>gi|134081473|emb|CAK46486.1| unnamed protein product [Aspergillus niger]
          Length = 1863

 Score = 45.7 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 63/222 (28%), Gaps = 28/222 (12%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           +P RWQ E ++ +D                  + A    GKT ++ + M  ++ +     
Sbjct: 796 EPDRWQREILDQIDAKAS------------LFVVAPTSAGKTFISFYAMKQVLESSDDGV 843

Query: 110 IICIANSETQLKNT---LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
           ++ +A ++  +      + A  SK         W          +    ++L        
Sbjct: 844 LVYVAPTKALVNQIAAEVQARFSKNYKHAGKSVWAIHTRDYRINNPTSCQILITV----- 898

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
             + +     +     ++     +    +  DE        +  +      L P     +
Sbjct: 899 -PHILQIMLLAPSNAKSW----ASRIQRIIFDEIHCIGQSDDGVVWEQLLLLAPCPIIAL 953

Query: 227 ---TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265
                N    N W     N    D K  +  TR  +     +
Sbjct: 954 SATVGNPEEFNDWLRLTQNANGHDLKMIEHKTRWSDLRKFEY 995


>gi|126664911|ref|ZP_01735894.1| Type III restriction enzyme, res subunit [Marinobacter sp. ELB17]
 gi|126630281|gb|EBA00896.1| Type III restriction enzyme, res subunit [Marinobacter sp. ELB17]
          Length = 548

 Score = 45.7 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 51/212 (24%), Gaps = 27/212 (12%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q    + V  H +   +       +  +    G GKT     +++  +       I+ +A
Sbjct: 150 QRRAAQQVWRHIYRGSS-------RVLLHMPTGAGKTRTAMHIIVRYLIEHEPCVIVWLA 202

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
           +S   L+    A    W  M       +             E      G+          
Sbjct: 203 SSAELLEQAADAFEQAWCQMGNREVLVKRAWGGGDLDFEGFEDGVLIGGLQKLSAYFERH 262

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
                R              V  DEA         S++   TE   +   I  S T    
Sbjct: 263 PIPAFRI-------GRRTKLVVIDEAHQAIAPTYSSVIEQLTETGADNALIGLSATPGRT 315

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFH 266
                        W     D+R  +  D    
Sbjct: 316 -------------WNDISEDSRLSDFFDGNKV 334


>gi|291165079|gb|ADD81106.1| TerL [Rhodococcus phage ReqiPine5]
          Length = 553

 Score = 45.7 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 52/385 (13%), Positives = 97/385 (25%), Gaps = 62/385 (16%)

Query: 1   MPRLISTDQKLEQ-ELHEMLMHAECVLSFKNFVMRFFPWGIKGKP--LEHFSQPHRWQLE 57
           +PR+ +TDQ     E H      E   +F + ++       K +    + +  P     E
Sbjct: 18  LPRMTTTDQLASLIESHTEGWTDERRSAFLDHLL-----REKDRADLRDSYDGP----AE 68

Query: 58  FMEAVDVH----------CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM-LWLISTRP 106
            M A+D H            +             ++     GK+TL +    L  +   P
Sbjct: 69  LMAALDPHFVITPAIATISAAVERAIREPRRNLLVTMPPQEGKSTLCSVAAPLRALQINP 128

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
              I  +A     L       +   +          +  ++L     +    ++      
Sbjct: 129 DQRI-ILATYAAGLAEEHSRTMRSLIERAGSGAVDPVSGMALKDRLGFTFADDRRAVDGW 187

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFND-------EASGTP--DIINKSILGFFTE 217
           K         +     T  G        +  D       EA      + +          
Sbjct: 188 KVKGHDGGLNAVGIGGTTTGRRGD---LIIIDDPFKDMAEADSKTQREKVLTWFRSVAMT 244

Query: 218 LNPNRFWIMTSNTR-------RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG-- 268
                  I+   TR                       WK   I   + +G+         
Sbjct: 245 RLAPTASIILVQTRWHEEDLAGKILELEKALPREDRRWKHINIPAVSEDGVPDALGRDPG 304

Query: 269 --IISRYGLD------------SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314
             ++S  G                V      GQ P           +  +    E  ++ 
Sbjct: 305 VAMVSARGRTKKQFADTRTVVGERVWSALYQGQ-PTPSSGGLFHRAWWTKNAVEELPENP 363

Query: 315 YAPLIMGCDIAGEG-GDKTVVVFRR 338
              ++   D A  G GD+  V+  +
Sbjct: 364 NLRVV-AVDPADSGKGDEAGVIAAQ 387


>gi|209548331|ref|YP_002280248.1| terminase large subunit [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209534087|gb|ACI54022.1| putative terminase large subunit protein [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 523

 Score = 45.7 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/165 (10%), Positives = 43/165 (26%), Gaps = 16/165 (9%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
            +   R +G TT     ML        +    IA++   ++     ++      LP    
Sbjct: 55  VLLKARQLGLTTFIQIFMLDACVFNRDIRAGTIAHTLGDVQTIFRDKIKYPYDNLPEG-- 112

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
                  +  +       +  + + +        +       T    H +    +     
Sbjct: 113 -------IRNAVPVVRTNQTELLLANNSSIRVGTSLR---SGTLQYLHISEYGKL----C 158

Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL 245
           +  P+   +   G    +   +   + S      G FY +     
Sbjct: 159 AKYPEKAREVRTGALNTVQAGQLVFVESTAEGQEGHFYSLCEDGQ 203


>gi|154685222|ref|YP_001420383.1| Yfml [Bacillus amyloliquefaciens FZB42]
 gi|154351073|gb|ABS73152.1| Yfml [Bacillus amyloliquefaciens FZB42]
          Length = 376

 Score = 45.7 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 54/204 (26%), Gaps = 28/204 (13%)

Query: 31  FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
           F+    P+  +      F +P   Q +  + +                     +  G GK
Sbjct: 7   FLQHTQPFIAENWEASGFQEPTVIQEKAAQVIMEGKD------------VIAESPTGTGK 54

Query: 91  TTLNAWMMLWLISTRPGMS---IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
           T   A+ +  L    P      +I +A S   +    +  +  W+     R         
Sbjct: 55  T--LAYTLPVLERINPEQKHPQVIILAPSRELVMQI-FQVIQDWIKGSDLRAL------- 104

Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG-TPDI 206
                  A + +Q   + +K + I                       +  DEA       
Sbjct: 105 --SLIGGANVKKQVEKLKNKPHIIAGTPGRVLELIQAKKLKMHEVKTIVLDEADQLVTQE 162

Query: 207 INKSILGFFTELNPNRFWIMTSNT 230
             +++         +R  +  S T
Sbjct: 163 HRETMKKIIKTTLKDRQLLSFSAT 186


>gi|194431875|ref|ZP_03064165.1| putative phage terminase, large subunit [Shigella dysenteriae 1012]
 gi|194419783|gb|EDX35862.1| putative phage terminase, large subunit [Shigella dysenteriae 1012]
          Length = 553

 Score = 45.7 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 33/261 (12%), Positives = 56/261 (21%), Gaps = 27/261 (10%)

Query: 23  ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82
           E V  F  F        +KG       +   WQ      +             T     +
Sbjct: 43  EVVERFIAFSRV--CPHVKGAMRGSPIELEPWQQFAFACILGFKVKATGRRKYTSAFIEV 100

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
              R   K+T  A +  W +    G   I  A         ++ +  +            
Sbjct: 101 --PRKNAKSTTAAILANWFLIMENGQQDIYTAAVSRDQARIVFDDARQMC--------LL 150

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
            + L    +    +++        K       T     P                DE   
Sbjct: 151 SRPLRRRVNIQAHKVMHPKSNSLLKPLAAKAATIEGTNPS-----------LSIVDEYHL 199

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
            PD    S L       P       + +                D+    +D   V    
Sbjct: 200 HPDNGVYSALELGMGARPEGLLFAITTSGSNVVSACKQHY----DYCCQILDGEEVNDSI 255

Query: 263 SGFHEGIISRYGLDSDVARIE 283
                 +     +D     I+
Sbjct: 256 FVLIYELDDENEVDDPAMWIK 276


>gi|330985172|gb|EGH83275.1| hypothetical protein PLA107_09108 [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 684

 Score = 45.7 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 32/295 (10%), Positives = 65/295 (22%), Gaps = 28/295 (9%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA--NSETQLKNTLWAEVSKWLSM-LPHR 138
           I   R +G T   A              +   A        ++ + A    W  + L   
Sbjct: 177 ILKSRQVGLTYYFAGEAFMDAVLTGDNQVFLSASRAQSEIFRSYIIAFAQAWFGLELTGN 236

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT----CRTYSEERPDTFVGPHNTHGMA 194
                +         +      +      H  +      R + +          +     
Sbjct: 237 PIVLSKDGKPWAELRFLSTNSSTAQGHHGHVYVDEYFWIRDFEKLNTVASAMATHKKWRK 296

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254
            +    S           G     +  +      +    +         P   W++    
Sbjct: 297 TYFSTPSAVSHQAYPFWQGEKFRNSKRK---AAKDPWPSDKQISAGALCPDGQWRKVITI 353

Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR------ 308
              + G    F    +     D D  +   + +F     + F     +E   S       
Sbjct: 354 LDAIAGGCDLFDLEQLQLEYDD-DKFQQLFMCKFIDSSQSAF-SLADLERCYSDLSLWAD 411

Query: 309 ----EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGN------IIEHIFDWSAKLI 353
               +      +P+ +G D +    D T VV            I     W  +  
Sbjct: 412 FDPDDPRPYGNSPVWIGYDPSRTRDDATCVVIAPPLENGGKFRILEKHSWRGQSF 466


>gi|229526565|ref|ZP_04415969.1| large subunit terminase [Vibrio cholerae bv. albensis VL426]
 gi|229336723|gb|EEO01741.1| large subunit terminase [Vibrio cholerae bv. albensis VL426]
          Length = 565

 Score = 45.7 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/196 (11%), Positives = 49/196 (25%), Gaps = 31/196 (15%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  I   R +G +T     +L        +    +A  + Q    ++            +
Sbjct: 63  RNIILKARQLGFSTAIDIYLLDEALFNKRLKCGIVA-QDKQAAGEIFR----------TK 111

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT---YSEERPDTFVGPH-NTHGMA 194
                 +L             +S     +       +    +  R  T    H + HG  
Sbjct: 112 VEVPYDNLPAWLKAATPTEERKSGANGGRMVFKNGSSIQVATSFRSGTVQRLHISEHGKI 171

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP---------- 244
                 +  P    +   G    ++ N    + S    + G FY +              
Sbjct: 172 -----CAKYPHKAKEVKTGTLNAIHQNAICFIESTAEGVGGDFYTMCMRAMEQAKSGVEL 226

Query: 245 -LEDWKRYQIDTRTVE 259
             ED++ +        
Sbjct: 227 SREDYQFHFFAWWQDP 242


>gi|168698695|ref|ZP_02730972.1| putative helicase SNF2 family protein [Gemmata obscuriglobus UQM
           2246]
          Length = 1047

 Score = 45.7 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 78/276 (28%), Gaps = 29/276 (10%)

Query: 61  AVDVHCHSNVNNS-NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS--- 116
            ++ +    V  +         ++   G+GKT     + L LI       I+ +  +   
Sbjct: 108 DIEDYQLDPVVRAIQMPRVNLLVADDVGLGKTIEAGMVALELIIRHRTRKILIVCPAPLQ 167

Query: 117 ---ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173
              + Q+++    +     S L  +     +S  +H + W       +     K      
Sbjct: 168 VQWQEQMRDKFGLDFRIVNSALVGQLR---RSRGIHVNPWNHFPRLITSIDFLKRERPL- 223

Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPD------IINKSILGFFTE--LNPNRFWI 225
           R + E  P      +      +  DEA             +        +   +      
Sbjct: 224 RRFRELLPGPDDPIYPRRFDLLIVDEAHNCAPSGVGRYATDSQRTQALRQLVPHFEHKLF 283

Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
           +T+     +  + + F+  LE     +    T           +             +  
Sbjct: 284 LTATP---HNGYPESFSALLELLDNQRFARSTPPDRKQLNAVMVRRMKSELPP----KWD 336

Query: 286 G--QFPQQEVNNF-IPHNYIEEAMSREAIDDLYAPL 318
           G  +FP++ ++   +P+   E A+           +
Sbjct: 337 GSPRFPKRVLDPIEVPYTDDERAVHTALRRYADLRV 372


>gi|167622358|ref|YP_001672652.1| type III restriction protein res subunit [Shewanella halifaxensis
           HAW-EB4]
 gi|167352380|gb|ABZ74993.1| type III restriction protein res subunit [Shewanella halifaxensis
           HAW-EB4]
          Length = 1072

 Score = 45.7 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 50/193 (25%), Gaps = 29/193 (15%)

Query: 44  PLEHFS-QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102
           P  +F  +PH  Q   ++ +       V     + ++  + A  G GKT ++A+      
Sbjct: 319 PSFYFDIKPHSHQRAILDKL------KVERELHSRYRNLVVAATGTGKTIISAFDFAEFY 372

Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
           +  P    + +A+ E  LK                       +            L    
Sbjct: 373 AANPEAKFLFLAHREEILKQ-------------------ARSAYRGVLKSNQFGELLVGQ 413

Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222
               K   +     S       +     +   +  DE                    P  
Sbjct: 414 NKPQKFNQLFASIQSLNNQLATIQLTEDYFDYIVIDEVHHIAASSY---RPVLQHFKPQI 470

Query: 223 FWIMTSNTRRLNG 235
              +T+   R +G
Sbjct: 471 LVGLTATPERHDG 483


>gi|297580076|ref|ZP_06942003.1| pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide
           acyltransferase [Vibrio cholerae RC385]
 gi|297535722|gb|EFH74556.1| pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide
           acyltransferase [Vibrio cholerae RC385]
          Length = 565

 Score = 45.7 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/192 (9%), Positives = 47/192 (24%), Gaps = 23/192 (11%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  I   R +G +T     +L        +    +A  +         E+ +    +P+ 
Sbjct: 63  RNIILKARQLGFSTAIDIYLLDEALFNKRLKCGIVAQDKQAA-----GEIFRTKVEVPYD 117

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
           +       ++      +      M   +        ++            +         
Sbjct: 118 NLPAWLKAAIPTEERKSGANGGRMVFKNGSSIQVATSFRSGTVQRLHISEHGKI------ 171

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP-----------LED 247
             +  P    +   G    ++ N    + S    + G FY I                ED
Sbjct: 172 -CAKYPHKAKEVKTGTLNAIHQNAICFIESTAEGVGGDFYTICMRAMEQAKSGVELSRED 230

Query: 248 WKRYQIDTRTVE 259
           ++ +        
Sbjct: 231 YQFHFFAWWQDP 242


>gi|304389862|ref|ZP_07371821.1| SNF2 domain protein [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|304327038|gb|EFL94277.1| SNF2 domain protein [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
          Length = 458

 Score = 45.7 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 59/193 (30%), Gaps = 28/193 (14%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG-- 107
           QPH +Q +  + +  H  +            AI  G G+GK+ +     +W +       
Sbjct: 4   QPHNYQRQATQYIIDHPEA------------AILLGMGLGKSVIT-LTAIWQLMLDYFTI 50

Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
             ++ IA      ++T  AE++KW  +        + +     +      +   +  ++ 
Sbjct: 51  SRVLVIAP-LRVARDTWSAEIAKWDHLDGLAVAVAVGTKQDRLAALAKSAMVTIINRENI 109

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
            + +                 +     V  DE S   +   K            + W+  
Sbjct: 110 PWLVN------------QLNGSWPFDMVVIDELSSFKNHRAKRFTALVKMRPFVKRWVGL 157

Query: 228 SNTRRLNGWFYDI 240
           + T   NG     
Sbjct: 158 TGTPASNGLMDVW 170


>gi|294783569|ref|ZP_06748893.1| phage terminase large subunit [Fusobacterium sp. 1_1_41FAA]
 gi|294480447|gb|EFG28224.1| phage terminase large subunit [Fusobacterium sp. 1_1_41FAA]
          Length = 572

 Score = 45.7 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 37/310 (11%), Positives = 78/310 (25%), Gaps = 61/310 (19%)

Query: 69  NVNNSNPTIFKCA-ISAGRGIGKTTLNAWM-MLWLISTRPGMSIICIANSETQLKNTLWA 126
               +    F+ A +  GR  GK+ L+     L+         I C A  + Q  N +W 
Sbjct: 84  KKKKTGDRRFREAYLQVGRRNGKSFLSGIESTLFSSMIGVKERIFCAATKQDQA-NIVWD 142

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
           EV  ++            S       +  +  ++++        I   +   +  D    
Sbjct: 143 EVRNFIE-----------SDRELTELYVVKEHDRTIKSSLTGSVIKALSKDTKGMD---- 187

Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF----- 241
                 +    DE    P+     +L        N   +  +        F         
Sbjct: 188 --GFGNVLAICDELHAHPNNQIYKLLFDGQADVDNALTLAITTAGFNLNSFCYEHYKFCE 245

Query: 242 ------------------NIPLEDWKRYQIDTRTVEGIDSGFH----------------E 267
                                 +D   ++   ++                          
Sbjct: 246 KILEGVIEKDTLFIFICEMDADDDIWDWKNWLKSNPYFLYEEDGITPNKKKIDLFKQKAI 305

Query: 268 GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA-MSREAIDDLYAPLIMGCDIAG 326
               + G +      + L ++       +I    ++E        D       +G D++ 
Sbjct: 306 DAKEKGGAELVNFLTKQLNRWVTTGSGQYINLEKLKECESDLTLEDMKGKDCYLGFDLS- 364

Query: 327 EGGDKTVVVF 336
           +GGD T +  
Sbjct: 365 KGGDLTSIAL 374


>gi|321472411|gb|EFX83381.1| hypothetical protein DAPPUDRAFT_48010 [Daphnia pulex]
          Length = 657

 Score = 45.7 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 62/201 (30%), Gaps = 26/201 (12%)

Query: 36  FPWGIKGKPLEHFSQP-HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN 94
           F  G         ++P  ++Q + +E    H                ++   G+GKT + 
Sbjct: 93  FDMGAGDTWFYPTNKPVRKYQRDIVETCLFH-------------NTLVTLPTGLGKTFIA 139

Query: 95  AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWY 154
           A +M       P   II +A ++          V++ +          + S S   +G  
Sbjct: 140 AVVMYNFFRWYPRGKIIFMAPTK--------PLVAQQIQACYEIMGLPLDSTSE-MTGAM 190

Query: 155 AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG-TPDIINKSILG 213
           +    ++   + + + +T +  + +          +    +  DEA     +     ++ 
Sbjct: 191 SPADRKTQWREKRVFFLTPQILTNDISRA--AFPASEIKCLVLDEAHKALGNYAYVQVVQ 248

Query: 214 FFTELNPNRFWIMTSNTRRLN 234
                      +  S T   +
Sbjct: 249 ELCNHGAVFRILALSATPGSD 269


>gi|296126352|ref|YP_003633604.1| Terminase [Brachyspira murdochii DSM 12563]
 gi|296126731|ref|YP_003633983.1| Terminase [Brachyspira murdochii DSM 12563]
 gi|296127295|ref|YP_003634547.1| Terminase [Brachyspira murdochii DSM 12563]
 gi|296018168|gb|ADG71405.1| Terminase [Brachyspira murdochii DSM 12563]
 gi|296018547|gb|ADG71784.1| Terminase [Brachyspira murdochii DSM 12563]
 gi|296019111|gb|ADG72348.1| Terminase [Brachyspira murdochii DSM 12563]
          Length = 590

 Score = 45.7 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/199 (13%), Positives = 51/199 (25%), Gaps = 24/199 (12%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS-- 109
             W+   + ++         N      K  +   R  GKTT  + +  +           
Sbjct: 75  EPWEQFIIASI--FGWRRKENKLRRYKKAYVQVSRKNGKTTFASGIGNYCFFCDSPAEAG 132

Query: 110 --IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
             I  IA  + Q K   W+E  + +          +   ++          ++     SK
Sbjct: 133 VEIYYIATKKDQAK-IAWSESERQIRKAK-----ALNKEAITYKQTSTITKKKDTASKSK 186

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIM 226
                  T     P             V  DE    PD  +   +            +I+
Sbjct: 187 PLGQDSNTEDGLNPH-----------LVIVDEYHAHPDNELLNVLESGMGARRQPLVFII 235

Query: 227 TSNTRRLNGWFYDIFNIPL 245
           T+     +   +  +    
Sbjct: 236 TTAGFDKSSVCFSEYEYAK 254


>gi|326339403|gb|EGD63215.1| Phage terminase large subunit [Escherichia coli O157:H7 str. 1044]
          Length = 492

 Score = 45.7 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 48/232 (20%), Gaps = 25/232 (10%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             WQ      +             T     +   R   K+T  A +  W +    G   I
Sbjct: 9   EPWQQFAFACILGFKVKATGRRKYTSAFIEV--PRKNAKSTTAAILANWFLIMENGQQDI 66

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A         ++ +  +             + L    +    +++        K    
Sbjct: 67  YTAAVSRDQARIVFDDARQMC--------LLSRPLRRRVNIQAHKVIHPKSNSLLKPLAA 118

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
              T     P                DE    PD    S L       P       + + 
Sbjct: 119 KAATIEGTTPS-----------LAIVDEYHLHPDNGVYSALELGMGARPEGLLFAITTSG 167

Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283
                          D+    +D   V          +     +D     I+
Sbjct: 168 SNVVSACKQHY----DYCCQILDGEEVNESMFVLIYELDDESEVDDPAMWIK 215


>gi|310792137|gb|EFQ27664.1| Sec63 Brl domain-containing protein [Glomerella graminicola M1.001]
          Length = 1974

 Score = 45.7 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 32/123 (26%), Gaps = 10/123 (8%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               + +  G GKT      M W    RPG  ++ IA  +  ++  +    ++    L  +
Sbjct: 1148 NVLLGSPTGSGKTVAAELAMWWAFRERPGSKVVYIAPMKALVRERVKDWGARLARPLGLK 1207

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               E+   +   +    +        +                             V  D
Sbjct: 1208 -LVELTGDNTPDTRTIKDADIIITTPEKWDGISRSWQTRGYV---------RQVSLVIID 1257

Query: 199  EAS 201
            E  
Sbjct: 1258 EIH 1260


>gi|195569151|ref|XP_002102574.1| GD19428 [Drosophila simulans]
 gi|194198501|gb|EDX12077.1| GD19428 [Drosophila simulans]
          Length = 1487

 Score = 45.7 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 54/211 (25%), Gaps = 11/211 (5%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              +    G+GKT + A +M       P   I+ +A +   +   + A       ++P  
Sbjct: 73  NTLVVLPTGLGKTFIAAVVMYNFYRWYPKGKIVFMAPTRPLVSQQIHASQK----IMPFP 128

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               +Q     P    AEL        +    +          D            +  D
Sbjct: 129 SEDTVQLTGQLPRPKRAELWASKRVFFATPQVVHS---DMLEADGGSSFPFGSIKLIVVD 185

Query: 199 EAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLN--GWFYDIFNIPLEDWKRYQIDT 255
           EA           +       N +   +  S T             N+ + + +     +
Sbjct: 186 EAHRAKGRYAYTQVADCLMARNRHFRMLALSATPGRTMEDVAAVCRNLYISNLQVRWDTS 245

Query: 256 RTV-EGIDSGFHEGIISRYGLDSDVARIEIL 285
             V   I       I+          R  +L
Sbjct: 246 IDVQPYIHRRTIRTIVVSLKERIKEPRERLL 276


>gi|195344412|ref|XP_002038781.1| GM10427 [Drosophila sechellia]
 gi|194133802|gb|EDW55318.1| GM10427 [Drosophila sechellia]
          Length = 1593

 Score = 45.7 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 54/211 (25%), Gaps = 11/211 (5%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              +    G+GKT + A +M       P   I+ +A +   +   + A       ++P  
Sbjct: 73  NTLVVLPTGLGKTFIAAVVMYNFYRWYPKGKIVFMAPTRPLVSQQIHASQK----IMPFP 128

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               +Q     P    AEL        +    +          D            +  D
Sbjct: 129 SEDTVQLTGQLPRPKRAELWASKRVFFATPQVVHS---DMLEADGGSSFPFGSIKLIVVD 185

Query: 199 EAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLN--GWFYDIFNIPLEDWKRYQIDT 255
           EA           +       N +   +  S T             N+ + + +     +
Sbjct: 186 EAHRAKGRYAYTQVADCLMARNRHFRMLALSATPGRTMEDVAAVCRNLYISNLQVRWDTS 245

Query: 256 RTV-EGIDSGFHEGIISRYGLDSDVARIEIL 285
             V   I       I+          R  +L
Sbjct: 246 IDVQPYIHRRTIRTIVVSLKERIKEPRERLL 276


>gi|304406229|ref|ZP_07387886.1| type III restriction protein res subunit [Paenibacillus
           curdlanolyticus YK9]
 gi|304344813|gb|EFM10650.1| type III restriction protein res subunit [Paenibacillus
           curdlanolyticus YK9]
          Length = 1052

 Score = 45.7 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 73/232 (31%), Gaps = 39/232 (16%)

Query: 4   LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63
            ++++ + +++L + L   +     +  ++  F              P+ +Q E +E ++
Sbjct: 290 FLASEPEHDEQLKQALGKQKLNDGNQESMVFAF-----------TIMPYDYQKEILEKLE 338

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
                    +     K  + A  G+GKT ++A+         P   ++ +A+ E  LK +
Sbjct: 339 A------ERALYGRTKNLLVAATGVGKTVISAFDYKRYAQRHPQARLLFVAHREEILKQS 392

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
           +                F ++      +     +           +       S +  + 
Sbjct: 393 M------------DTFRFILKD----LNFGELHVGSHQAKSLDHLFISIQSLNSIKLTER 436

Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
                  +   +  DE         + +        PN    +T+   R++G
Sbjct: 437 TT---ADYYDFIIVDEFHHAAAPSYQKL---LNHYQPNILLGLTATPERMDG 482


>gi|239622569|ref|ZP_04665600.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239514566|gb|EEQ54433.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 487

 Score = 45.7 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 32/304 (10%), Positives = 61/304 (20%), Gaps = 53/304 (17%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ + ++ +      +            +   R  GKTT+     +      P      
Sbjct: 41  PWQRQVIDVISE-IDPSTGTYWYDELVLTVQ--RQAGKTTITKSYDVRNSLWGPDRKTWY 97

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           +A +     +     V  W              L              ++   +      
Sbjct: 98  LAQTGKDANDQFRDFVKSW----------RKSRLRKLAKPPRLSNGSMALEFKNGSQLRP 147

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEA-------------SGT-------------PDI 206
                     T    H   G  +  DE                              P I
Sbjct: 148 GGA-------TEAAGHGVQGDLINVDEVWSLSKQQAKNLKDGFIPTTTTRLKLTGVRPQI 200

Query: 207 INKSILGFFTEL--NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG---- 260
              S  G  +    N     +   +      +F        +      I  R   G    
Sbjct: 201 WWTSTEGNASSEYFNDRLDRLRAGDIPDRTAFFDFGIPFDADPEDLETI-WRYHPGAGYL 259

Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIM 320
            D     G   ++  D++               +  I      + M      +    +  
Sbjct: 260 FDFDQLAGFRRQFDDDAEGWARAFGNIRDAGSTDRAIDSLLWADTMDEPVTPEHGMRVCF 319

Query: 321 GCDI 324
           G  +
Sbjct: 320 GVGV 323


>gi|145249212|ref|XP_001400945.1| helicase mug81 [Aspergillus niger CBS 513.88]
 gi|134081623|emb|CAK46557.1| unnamed protein product [Aspergillus niger]
          Length = 1991

 Score = 45.7 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/123 (11%), Positives = 33/123 (26%), Gaps = 10/123 (8%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               + +  G GKT      M W    +PG  ++ IA  +  ++  +     +  + +  +
Sbjct: 1159 NVLLGSPTGSGKTVAAELAMWWAFREKPGSKVVYIAPMKALVRERVQDWKKRLTAPMGLK 1218

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               E+   +   +    +        +            +                V  D
Sbjct: 1219 -LVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRDYV---------RKVSLVIID 1268

Query: 199  EAS 201
            E  
Sbjct: 1269 EIH 1271


>gi|115396706|ref|XP_001213992.1| hypothetical protein ATEG_04814 [Aspergillus terreus NIH2624]
 gi|114193561|gb|EAU35261.1| hypothetical protein ATEG_04814 [Aspergillus terreus NIH2624]
          Length = 2002

 Score = 45.7 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/123 (11%), Positives = 33/123 (26%), Gaps = 10/123 (8%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               + +  G GKT      M W    +PG  ++ IA  +  ++  +     +  + +  +
Sbjct: 1157 NVLLGSPTGSGKTVAAELAMWWAFREKPGSKVVYIAPMKALVRERVQDWKKRLTAPMGLK 1216

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               E+   +   +    +        +            +                V  D
Sbjct: 1217 -LVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRDYV---------RKVSLVIID 1266

Query: 199  EAS 201
            E  
Sbjct: 1267 EIH 1269


>gi|172056353|ref|YP_001812813.1| type III restriction protein res subunit [Exiguobacterium sibiricum
           255-15]
 gi|171988874|gb|ACB59796.1| type III restriction protein res subunit [Exiguobacterium sibiricum
           255-15]
          Length = 774

 Score = 45.7 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 65/231 (28%), Gaps = 35/231 (15%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           PHR Q E + A+          +        + A  G+GKT L+A         R    I
Sbjct: 195 PHRVQEEALRALRETMEEGRTRA------LTVLA-TGLGKTYLSA------FFARDFKRI 241

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + +A+           E+ +       +     Q  + +         +  +        
Sbjct: 242 LFLAHQ---------RELLEQAERSFKKVESNWQ-TAFYIGSDRTNDEQTDV------LF 285

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
            + +T S+ R          +   +  DE         + +        P     +T+  
Sbjct: 286 GSVQTLSQNRH--LERFAQDYFDLIIIDEFHHAAAKSYQKV---LAHFEPRFLLGLTATP 340

Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR 281
            R++G              +    +   EG  + FH   I      S + R
Sbjct: 341 DRMDGA-DVYALCDNNVAFQMHFTSAINEGFLTPFHYYGIHDVIDYSQLRR 390


>gi|259146921|emb|CAY80177.1| Dna2p [Saccharomyces cerevisiae EC1118]
          Length = 1522

 Score = 45.7 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 51/173 (29%), Gaps = 6/173 (3%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKTT+ A ++   I    G  ++  + + + + N L    +  +S++      ++   
Sbjct: 1077 GTGKTTVIAEII--KILVSEGKRVLLTSYTHSAVDNILIKLRNTNISIMRLGMKHKVHPD 1134

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
            +      YA +   +  +   + T    T      D     +      V  DEAS     
Sbjct: 1135 TQKYVPNYASVKSYNDYLSKINSTSVVATTCLGINDILFTLNEKDFDYVILDEASQIS-- 1192

Query: 207  INKSILGFFTELNPNRFWIMTSN-TRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
                 LG     N              +      +  +    +K +       
Sbjct: 1193 -MPVALGPLRYGNRFIMVGDHYQLPPLVKNDAARLGGLEESLFKTFCEKHPES 1244


>gi|151944110|gb|EDN62403.1| DNA helicase [Saccharomyces cerevisiae YJM789]
          Length = 1522

 Score = 45.7 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 51/173 (29%), Gaps = 6/173 (3%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKTT+ A ++   I    G  ++  + + + + N L    +  +S++      ++   
Sbjct: 1077 GTGKTTVIAEII--KILVSEGKRVLLTSYTHSAVDNILIKLRNTNISIMRLGMKHKVHPD 1134

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
            +      YA +   +  +   + T    T      D     +      V  DEAS     
Sbjct: 1135 TQKYVPNYASVKSYNDYLSKINSTSVVATTCLGINDILFTLNEKDFDYVILDEASQIS-- 1192

Query: 207  INKSILGFFTELNPNRFWIMTSN-TRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
                 LG     N              +      +  +    +K +       
Sbjct: 1193 -MPVALGPLRYGNRFIMVGDHYQLPPLVKNDAARLGGLEESLFKTFCEKHPES 1244


>gi|6321958|ref|NP_012034.1| Dna2p [Saccharomyces cerevisiae S288c]
 gi|731738|sp|P38859|DNA2_YEAST RecName: Full=DNA replication ATP-dependent helicase DNA2
 gi|458906|gb|AAB68010.1| Dna2p: DNA replication helicase [Saccharomyces cerevisiae]
 gi|256273969|gb|EEU08887.1| Dna2p [Saccharomyces cerevisiae JAY291]
 gi|285810070|tpg|DAA06857.1| TPA: Dna2p [Saccharomyces cerevisiae S288c]
          Length = 1522

 Score = 45.7 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 51/173 (29%), Gaps = 6/173 (3%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKTT+ A ++   I    G  ++  + + + + N L    +  +S++      ++   
Sbjct: 1077 GTGKTTVIAEII--KILVSEGKRVLLTSYTHSAVDNILIKLRNTNISIMRLGMKHKVHPD 1134

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
            +      YA +   +  +   + T    T      D     +      V  DEAS     
Sbjct: 1135 TQKYVPNYASVKSYNDYLSKINSTSVVATTCLGINDILFTLNEKDFDYVILDEASQIS-- 1192

Query: 207  INKSILGFFTELNPNRFWIMTSN-TRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
                 LG     N              +      +  +    +K +       
Sbjct: 1193 -MPVALGPLRYGNRFIMVGDHYQLPPLVKNDAARLGGLEESLFKTFCEKHPES 1244


>gi|198450789|ref|XP_001358130.2| GA18736 [Drosophila pseudoobscura pseudoobscura]
 gi|198131191|gb|EAL27267.2| GA18736 [Drosophila pseudoobscura pseudoobscura]
          Length = 2182

 Score = 45.7 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/175 (11%), Positives = 42/175 (24%), Gaps = 20/175 (11%)

Query: 45   LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            L  F+  +  Q +    +    +              + A  G GKT +    +   ++ 
Sbjct: 1329 LYGFTHFNPIQTQIFHCLYHTDN-----------NVLLGAPTGSGKTIVAELAIFRALNE 1377

Query: 105  RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
             P   ++ IA  +  +K  +     ++          E+            E        
Sbjct: 1378 NPKCKVVYIAPLKALVKERIGDWEKRFHRSSLGLKVVELTGDVTPDIQAIRESQLIVTTP 1437

Query: 165  DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
            +            E            H   +  DE     +     I    +  N
Sbjct: 1438 EKWDGISRSWQTREYV---------QHVSLIVIDEIHLLGEDRGPVIEVIVSRTN 1483


>gi|195143553|ref|XP_002012762.1| GL23759 [Drosophila persimilis]
 gi|194101705|gb|EDW23748.1| GL23759 [Drosophila persimilis]
          Length = 2182

 Score = 45.7 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/175 (11%), Positives = 42/175 (24%), Gaps = 20/175 (11%)

Query: 45   LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            L  F+  +  Q +    +    +              + A  G GKT +    +   ++ 
Sbjct: 1329 LYGFTHFNPIQTQIFHCLYHTDN-----------NVLLGAPTGSGKTIVAELAIFRALNE 1377

Query: 105  RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
             P   ++ IA  +  +K  +     ++          E+            E        
Sbjct: 1378 NPKCKVVYIAPLKALVKERIGDWEKRFHRSSLGLKVVELTGDVTPDIQAIRESQLIVTTP 1437

Query: 165  DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
            +            E            H   +  DE     +     I    +  N
Sbjct: 1438 EKWDGISRSWQTREYV---------QHVSLIVIDEIHLLGEDRGPVIEVIVSRTN 1483


>gi|330939345|gb|EGH42730.1| hypothetical protein PSYPI_10145 [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 650

 Score = 45.7 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/295 (10%), Positives = 65/295 (22%), Gaps = 28/295 (9%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA--NSETQLKNTLWAEVSKWLSM-LPHR 138
           I   R +G T   A              +   A        ++ + A    W  + L   
Sbjct: 177 ILKSRQVGLTYYFAGEAFMDAVLTGDNQVFLSASRAQSEIFRSYIIAFAQAWFGLELTGN 236

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT----CRTYSEERPDTFVGPHNTHGMA 194
                +         +      +      H  +      R + +          +     
Sbjct: 237 PIVLSKDGKPWAELRFLSTNSSTAQGHHGHVYVDEYFWIRDFEKLNTVASAMATHKKWRK 296

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254
            +    S           G     +  +      +    +         P   W++    
Sbjct: 297 TYFSTPSAVSHQAYPFWQGEKFRNSKRK---AAKDPWPSDKQISAGALCPDGQWRKVITI 353

Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR------ 308
              + G    F    +     D D  +   + +F     + F     +E   S       
Sbjct: 354 LDAIAGGCDLFDLEQLQLEYDD-DKFQQLFMCKFIDSSQSAF-SLADLERCYSDLSLWAD 411

Query: 309 ----EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGN------IIEHIFDWSAKLI 353
               +      +P+ +G D +    D T VV            I     W  +  
Sbjct: 412 FDPDDPRPYGNSPVWIGYDPSRTRDDATCVVIAPPLENGGKFRILEKHSWRGQSF 466


>gi|289628558|ref|ZP_06461512.1| hypothetical protein PsyrpaN_26063 [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289648058|ref|ZP_06479401.1| hypothetical protein Psyrpa2_09957 [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330870325|gb|EGH05034.1| hypothetical protein PSYAE_24348 [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 684

 Score = 45.7 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/295 (10%), Positives = 65/295 (22%), Gaps = 28/295 (9%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA--NSETQLKNTLWAEVSKWLSM-LPHR 138
           I   R +G T   A              +   A        ++ + A    W  + L   
Sbjct: 177 ILKSRQVGLTYYFAGEAFMDAVLTGDNQVFLSASRAQSEIFRSYIIAFAQSWFGLELTGN 236

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT----CRTYSEERPDTFVGPHNTHGMA 194
                +         +      +      H  +      R + +          +     
Sbjct: 237 PIVLSKDGKPWAELRFLSTNSSTAQGHHGHVYVDEYFWIRDFEKLNTVASAMATHKKWRK 296

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254
            +    S           G     +  +      +    +         P   W++    
Sbjct: 297 TYFSTPSAVSHQAYPFWQGEKFRNSKRK---AAKDPWPSDKQISAGALCPDGQWRKVITI 353

Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR------ 308
              + G    F    +     D D  +   + +F     + F     +E   S       
Sbjct: 354 LDAIAGGCDLFDLEQLQLEY-DEDKFQQLFMCKFIDSSQSAF-SLADLERCYSDLSLWAD 411

Query: 309 ----EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGN------IIEHIFDWSAKLI 353
               +      +P+ +G D +    D T VV            I     W  +  
Sbjct: 412 FDPDDPRPYGNSPVWIGYDPSRTRDDATCVVIAPPLENGGKFRILEKHSWRGQSF 466


>gi|300521552|gb|ADK25987.1| ERRC4-type helicase [Candidatus Nitrososphaera gargensis]
          Length = 740

 Score = 45.7 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/301 (8%), Positives = 79/301 (26%), Gaps = 42/301 (13%)

Query: 48  FSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107
              P  W+      +D   +        +     +     +GKT + A +   ++     
Sbjct: 7   AEHPLVWEG----TIDHRLYQKNIADAASHKNTLVILPTALGKTMIAALVCADMLYKYRD 62

Query: 108 MSIICIANSETQLKNTL--WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
             ++ +A +   +   L  ++ V K +          M +    P    A   ++ + + 
Sbjct: 63  KRVLMMAPTRPLVSQHLKSFSAVLKIME-----EQVAMVTGKTVPEARRAVWDKRDVRL- 116

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNP-NRF 223
                +                H    + +  DEA     D    +I   +   +     
Sbjct: 117 -----VFATPEVVRNDLEEGRLHLKDFILLVFDEAHRAVKDYAYTAIAREYVGQSMHPVI 171

Query: 224 WIMTSNTRRLNGWFYDIFNIPLEDWK-----------------RYQIDTRTVEGIDSGFH 266
             MT++         ++ N    +                     + +   +   +  + 
Sbjct: 172 LAMTASPGAKKERIQEVCNNLYIEHVEYRSEEDGDVKPYVNPIDVKWEWFDLPE-EYRYI 230

Query: 267 EGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI-----DDLYAPLIMG 321
             ++     +     ++      +++       + IE   +         ++   P+ + 
Sbjct: 231 ASVLRSMLDERLKWLVQRGLLGKKKDTRWIFKRDLIEAGEALRYRLELTMEEQRGPIYVA 290

Query: 322 C 322
            
Sbjct: 291 I 291


>gi|195124341|ref|XP_002006652.1| GI18468 [Drosophila mojavensis]
 gi|193911720|gb|EDW10587.1| GI18468 [Drosophila mojavensis]
          Length = 1373

 Score = 45.7 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 49/160 (30%), Gaps = 12/160 (7%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
               +    G+GKT + A +M  L    P   +I +A +   +      +++    ++P 
Sbjct: 72  RNTLVVLPTGLGKTFIAAVVMYNLHRWYPESKLIFMAPTRPLVAQ----QIAACQKIMPF 127

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM--AV 195
                ++     P    AEL         + +  T +    +  DT  G    +     +
Sbjct: 128 CPEDTVELTGRLPRAKRAELW-----ATKRVFFATPQVVQSDMLDTGDGLQFPYMSIKLL 182

Query: 196 FNDEAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
             DEA           +       NP    +  S T    
Sbjct: 183 VVDEAHRAKGRYAYTQVTDSLMARNPYFRMLALSATPGRT 222


>gi|195136690|ref|XP_002012487.1| GI16508 [Drosophila mojavensis]
 gi|193906452|gb|EDW05319.1| GI16508 [Drosophila mojavensis]
          Length = 293

 Score = 45.7 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 49/160 (30%), Gaps = 12/160 (7%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
               +    G+GKT + A +M  L    P   +I +A +   +      +++    ++P 
Sbjct: 72  RNTLVVLPTGLGKTFIAAVVMYNLHRWYPESKLIFMAPTRPLVAQ----QIAACQKIMPF 127

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM--AV 195
                ++     P    AEL         + +  T +    +  DT  G    +     +
Sbjct: 128 CPEDTVELTGRLPRAKRAELW-----ATKRVFFATPQVVQSDMLDTGDGLQFPYMSIKLL 182

Query: 196 FNDEAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
             DEA           +       NP    +  S T    
Sbjct: 183 VVDEAHRAKGRYAYTQVTDSLMARNPYFRMLALSATPGRT 222


>gi|124009888|ref|ZP_01694555.1| hypothetical protein M23134_06477 [Microscilla marina ATCC 23134]
 gi|123984124|gb|EAY24490.1| hypothetical protein M23134_06477 [Microscilla marina ATCC 23134]
          Length = 539

 Score = 45.7 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 82/282 (29%), Gaps = 40/282 (14%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
            AG+G GKT     +   LI+  PG+     AN++ QL ++    V      L    + E
Sbjct: 35  MAGQGAGKTHGAGLISFRLITNFPGVFGFMGANTDMQLTDSTLYRVFLVWKDLGLEEYDE 94

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE-----ERPDTFVGPHNTHGMAVFN 197
                 +  G          G   K Y      ++         + +             
Sbjct: 95  YLGQGDYVVGTQPPRHFSREGHAFKSYRNKISFWNGCVVFIGSLENYKAHDGKEFAWAIL 154

Query: 198 DEASGTPDI-INKSILGFFTELN---PNRFWIMT------SNT---RRLNGWFYDIFNIP 244
           DE   T +  + + ILG   +           +T       +           Y   +  
Sbjct: 155 DETKDTREEAVQEVILGRLRQQGLYISEATQALTSEEYDEGSPVVANLPFNPLYIFTSPA 214

Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ--FPQQEVNNF----IP 298
              W     D   +      + E I ++        + ++ G   F      +     +P
Sbjct: 215 KVPWIN---DWFELS----EYEEEIKAKIYNPPQYFKKKVGGDSKFVVISATHLNLKNLP 267

Query: 299 HNYIEEAMSREAIDDLYAPLIMGCDI-AGEGG------DKTV 333
            NYIE+          +  LI G D  A  GG      D +V
Sbjct: 268 SNYIEK-QEANLASHRHGMLIYG-DPLAKSGGEFWKQWDASV 307


>gi|301169159|emb|CBW28756.1| phage d3 terminase-like protein [Haemophilus influenzae 10810]
          Length = 555

 Score = 45.3 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 37/326 (11%), Positives = 72/326 (22%), Gaps = 54/326 (16%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ      +     ++            ++  R   K+T+ A +  W +    G   I 
Sbjct: 71  DWQTFLFANLLGFKRTDTGLRKYRSAYIQVA--RKNAKSTVAAVLANWFLLMESGQQDIY 128

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            A         ++ +  +   + P         L    +    +L+        +     
Sbjct: 129 TAAVSRDQARIVFDDARQMCLLSP--------PLRKRLNIQQHKLINPKSNSLMRPLAAK 180

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232
             T     P                DE     D    S L       P       +    
Sbjct: 181 SSTIEGTNPS-----------LAIVDEYHLHTDNSVYSALELGQGARPEGLLFAITTAGS 229

Query: 233 LNGWFYDIFNIP---------------------------LEDWKRYQIDTRTVEGIDSGF 265
                                                         + +    + I    
Sbjct: 230 NVISACKQHYDYCAQILEGNEQNDSLFVLIFELDEESEIDNPENWIKANPNIGKSIPYLD 289

Query: 266 HEGIISRYGLDSDVARIEILGQF---PQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGC 322
            E  I +           +  +F    Q         N+ + A +    D L+    +G 
Sbjct: 290 FENTIKKARGIPSEWVEMLTKRFNVWCQGTTPWLGEGNWAQCARNYTESDLLHQDCYLGL 349

Query: 323 DIAGEGGDKTVVV--FRRGNIIEHIF 346
           D++    D T +   F +G  +  I 
Sbjct: 350 DLSST-NDLTSLCYTFPQGKKVRLIT 374


>gi|302035564|ref|YP_003795886.1| hypothetical protein NIDE0175 [Candidatus Nitrospira defluvii]
 gi|300603628|emb|CBK39959.1| protein of unknown function [Candidatus Nitrospira defluvii]
          Length = 673

 Score = 45.3 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 49/156 (31%), Gaps = 2/156 (1%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL--IS 103
           EH ++P   Q   + AV       V   +P   +  +SA  G GK++  A  +     + 
Sbjct: 24  EHGNRPDAAQQLALRAVHNQLAGMVTEGSPMQGRWCLSAPIGFGKSSAVAAFLSAARQLG 83

Query: 104 TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
               +++   A    QL +   A ++  +     R +  +     +      E  E  + 
Sbjct: 84  FLGKLTVTIAAARVEQLYDFEEAILNAGIPKSEIRQYVSVLHKDKNAKRNSDEDREAPVL 143

Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
           + +           E         +      V  DE
Sbjct: 144 LITHEKMRRVYARPERNVIDRKPVYFLKRDLVVWDE 179


>gi|331701881|ref|YP_004398840.1| Terminase [Lactobacillus buchneri NRRL B-30929]
 gi|329129224|gb|AEB73777.1| Terminase [Lactobacillus buchneri NRRL B-30929]
          Length = 631

 Score = 45.3 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 41/317 (12%), Positives = 89/317 (28%), Gaps = 55/317 (17%)

Query: 54  WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL----ISTRPGMS 109
           WQ   +                     +++  R  GK+ L   ++L+      S +    
Sbjct: 108 WQQAILCLSQGWRTKEDKQKRFERCMVSVA--RTNGKSYLLNILILYAYLVEASDQFNAD 165

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           +  +A  + Q K + W  + +  + L     F    L    +    + + +S    ++  
Sbjct: 166 LCYLAPVDKQSKKS-WRYIKQTFNSLQSMPGFR--KLIKDQNIAINDDVLKSTKTQNQIL 222

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEA---SGTPDIINKSILGFFTELNPNRFWIM 226
            +T  +   +           H +    DE    +   D+I+K   G     N   F+I 
Sbjct: 223 RMTAGSAQLD---------AFHFLFATVDEYGDENFNSDVISKVTSGQVQTSNRQTFFIS 273

Query: 227 T--SNTR----RLNGWFYDIFNIPLED---------WKRYQIDTRTVE--GIDSGFH--- 266
           T  SN +            +                W++   D        + S      
Sbjct: 274 TAYSNPKVPMYSDVRRLTKVMEKDSNRTEDSTLALIWQQDDQDEVENPETWVKSNPLLDL 333

Query: 267 -------------EGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
                        E          +      L  + Q   + ++    I++++  +   D
Sbjct: 334 PAKHDTLLKGLISERDSKLEDGTLNDFINRNLNMWLQTAKDKYLKLEDIQKSVVSDFEID 393

Query: 314 LYAPLIMGCDIAGEGGD 330
                 +G D++    D
Sbjct: 394 -NQDCYVGFDLSHASDD 409


>gi|239617069|ref|YP_002940391.1| CRISPR-associated helicase Cas3 [Kosmotoga olearia TBF 19.5.1]
 gi|239505900|gb|ACR79387.1| CRISPR-associated helicase Cas3 [Kosmotoga olearia TBF 19.5.1]
          Length = 776

 Score = 45.3 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 52/319 (16%), Positives = 83/319 (26%), Gaps = 47/319 (14%)

Query: 4   LISTDQKLEQELHEMLMHAECVLSFKNFVMRF--FPWGIKGKPLEHFSQPHRWQLEFMEA 61
             + D+  + E  +       + SF  ++       W  K        +P   +    + 
Sbjct: 173 EDNVDEWQD-EFQDHFYEVNDIQSFILYMYLSSLLDWADK-TDAAFRDRPLPKRDPIPKD 230

Query: 62  VDVHCHSNVNNSNPTI-------------------FKCAISAGR-GIGKT-TLNA-WMML 99
           +       +   NP                     F   I  GR GIGKT TL +  + L
Sbjct: 231 LVEEYRKVLGFDNPGRDPMNQLRNKFYHEATNDTDFSIGILKGRTGIGKTLTLFSLGLKL 290

Query: 100 WLISTRPG--MSIICIAN---SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWY 154
               T       II          Q          K     P  +    Q          
Sbjct: 291 REKLTNSDYVPRIIYCLPFLSIIDQTYEVAVELFEKTGRSFPTENQVLQQHHLSDIEYST 350

Query: 155 AELL-----EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-----MAVFNDEASGTP 204
            E          + I+S +  I   T+       F    N          V  DE    P
Sbjct: 351 KEGEGYEKYLADLLINSWNSEIIITTFVSFFHSIFTNKRNMKFFRIPGSIVLLDEIQAIP 410

Query: 205 DIINK---SILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NIPLEDWKRYQIDTRTV 258
               +    IL    +    +F   T+   +  G          IPL+ +  + I   T 
Sbjct: 411 PKYWELTGKILKLLADYGGTKFVFSTATMPKCFGISGKHLYTGEIPLDRFDLHYIGEVTF 470

Query: 259 EGIDSGFHEGIISRYGLDS 277
           E     F   ++ +   +S
Sbjct: 471 EKFKEIFLREVVEKARDES 489


>gi|270293260|ref|ZP_06199471.1| putative helicase [Streptococcus sp. M143]
 gi|270279239|gb|EFA25085.1| putative helicase [Streptococcus sp. M143]
          Length = 880

 Score = 45.3 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 60/191 (31%), Gaps = 20/191 (10%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            ++Q E ++    +      +         ++A  G GKTT+   ++       P + ++
Sbjct: 14  RKYQKEVLDRFQDYQADRHVH--------LVAAP-GSGKTTIGIELIARF--GNPALVLV 62

Query: 112 CIANSETQLKNTL---WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
                  Q  + +   + E  + +S L  ++  EM++L++     +   + Q    +   
Sbjct: 63  PTVTIREQWVDRIQTAFLENEQKISDLVSQNLKEMKALTIVTYQAFHSAMNQLQTQEDGE 122

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
                        D            +  DE     +   KS+  F  +    +   +T+
Sbjct: 123 AEDFV------GFDLLASLRTQKVATLCLDECHHLRNEWWKSLEAFRKQYEQLQVISLTA 176

Query: 229 NTRRLNGWFYD 239
                +     
Sbjct: 177 TPPYDSEPELW 187


>gi|162329501|ref|YP_001604300.1| putative helicase [Acidianus filamentous virus 8]
 gi|157310618|emb|CAJ31696.1| putative helicase [Acidianus filamentous virus 8]
          Length = 564

 Score = 45.3 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 73/282 (25%), Gaps = 48/282 (17%)

Query: 18  MLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTI 77
           +L  +E  +    F    F        L++F +P  +Q   + ++    +          
Sbjct: 153 LLNISEIKIQP--FANLQF----YDITLKNF-EPREYQ---LNSIKQWINDVNIVGTG-- 200

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
               I A  G GK+ +     L ++  +    I+   NS T LK                
Sbjct: 201 ---IIKAPTGSGKSVIAIMSALEMLKNKRNAKIVYAVNSTTLLKQ--------------- 242

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN--THGMAV 195
              F  +               +     +         YS+++ +      +   +   +
Sbjct: 243 FQQFAKKEDLDFAIVSGELNELKKEKDANLIALSISYYYSQKKRNKHDELRDIVNNADLI 302

Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG-------------WFYDIFN 242
             DEA  TP     SI     +   +    +T+   R +G             +  +   
Sbjct: 303 IIDEAHHTP---ASSIKALLLDSPGSIRLGLTATPFREDGRDLEIHGLLGRVSYSINYQE 359

Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
           +    +            I     E I        +      
Sbjct: 360 LVKNHYLVPLEYIAFTPEIPKKLKEKIKRLEKEKENTEFARY 401


>gi|331017153|gb|EGH97209.1| hypothetical protein PLA106_13994 [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 684

 Score = 45.3 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/295 (10%), Positives = 65/295 (22%), Gaps = 28/295 (9%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA--NSETQLKNTLWAEVSKWLSM-LPHR 138
           I   R +G T   A              +   A        ++ + A    W  + L   
Sbjct: 177 ILKSRQVGLTYYFAGEAFMDAVLTGDNQVFLSASRAQSEIFRSYIIAFAQAWFGLELTGN 236

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT----CRTYSEERPDTFVGPHNTHGMA 194
                +         +      +      H  +      R + +          +     
Sbjct: 237 PIVLSKDGKPWAELRFLSTNSSTAQGHHGHVYVDEYFWIRDFEKLNTVASAMATHKKWRK 296

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254
            +    S           G     +  +      +    +         P   W++    
Sbjct: 297 TYFSTPSAVSHQAYPFWQGEKFRNSKRK---AAKDPWPSDKQISAGALCPDGQWRKVITI 353

Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR------ 308
              + G    F    +     D D  +   + +F     + F     +E   S       
Sbjct: 354 LDAIAGGCDLFDLEQLQLEYDD-DKFQQLFMCKFIDSSQSAF-SLADLERCYSDLSLWAD 411

Query: 309 ----EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGN------IIEHIFDWSAKLI 353
               +      +P+ +G D +    D T VV            I     W  +  
Sbjct: 412 FDPDDPRPYGNSPVWIGYDPSRTRDDATCVVIAPPLENGGKFRILEKHSWRGQSF 466


>gi|307290093|ref|ZP_07570017.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
           TX0411]
 gi|306498935|gb|EFM68429.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
           TX0411]
          Length = 434

 Score = 45.3 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/253 (11%), Positives = 71/253 (28%), Gaps = 23/253 (9%)

Query: 94  NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
            A +++  +  R  ++ + I   +  ++ +++ ++   +       +F++    +     
Sbjct: 49  IAHIIV-QLIMRYPVNAVAIRYVDNTIELSIFEQIKWAIEEQGVSKYFKVNKSPMK---- 103

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSIL 212
                   +    +   I  R          +          + +E A    +   K+I 
Sbjct: 104 --------ITYKPRGNYIVFRGAQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTIT 155

Query: 213 GFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDWKRYQIDTRTVEGIDSGF 265
                          +  + N   R   W    +      E+   +    +    I   F
Sbjct: 156 NSLLRGELADGLFYKFFYSYNPPKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAF 215

Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
            E + +    +   A  E  G+     V  F     I+  +  + +   +  +  G D  
Sbjct: 216 IEEVNATRAKNPKRAEWEYDGKAIGSGVVPFDNLRVIKGCI-TDEMVANFDNIRNGLDF- 273

Query: 326 GEGGDKTVVVFRR 338
           G   D    V   
Sbjct: 274 GYATDPLAFVRWH 286


>gi|227358314|ref|ZP_03842655.1| possible terminase large subunit [Proteus mirabilis ATCC 29906]
 gi|227161650|gb|EEI46687.1| possible terminase large subunit [Proteus mirabilis ATCC 29906]
          Length = 553

 Score = 45.3 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/265 (10%), Positives = 62/265 (23%), Gaps = 30/265 (11%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
             WQ     A        V ++    ++ A I   R   K+T+ A +  W +    G   
Sbjct: 70  EPWQQ---FAFANLLGFKVISTGRRKYRSAYIQVPRKNAKSTVAAILANWFLVMENGQQD 126

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           I  A         ++ +  +                 +        +  Q   + +    
Sbjct: 127 IYTAAVSRDQARIVFDDARQMC---------------VLSKPLKKRVAIQQHKVINPKRN 171

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
              +  + +          T+      DE    PD    S L       P       + +
Sbjct: 172 SLLKPLAAKAAT----IEGTNPSLAIVDEYHLHPDNAVYSALELGMGARPEGILFAITTS 227

Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL-GQFP 289
                           D+    +               +     +D +   I+       
Sbjct: 228 GSNVISACKQHY----DYCCQILAGEEQNESLFALIYELDDEKEIDDERLWIKANPNLNV 283

Query: 290 QQEVNNFIPHNYIEEAMSREAIDDL 314
             + +     + I++A    +    
Sbjct: 284 SVDGDALY--DTIQKARGIPSQWTE 306


>gi|6739656|gb|AAF27357.1|AF198256_11 phage D3 terminase-like protein [Haemophilus influenzae]
          Length = 555

 Score = 45.3 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 30/279 (10%), Positives = 61/279 (21%), Gaps = 35/279 (12%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ      +     ++            ++  R   K+T+ A +  W +    G   I 
Sbjct: 71  DWQTFLFANLLGFKRTDTGLRKYRSAYIQVA--RKNAKSTVAAVLANWFLLMESGQQDIY 128

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            A         ++ +  +   + P         L    +    +L+        +     
Sbjct: 129 TAAVSRDQARIVFDDARQMCLLSP--------PLRKRLNIQQHKLINPKSNSLMRPLAAK 180

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232
             T     P                DE     D    S L       P       +    
Sbjct: 181 SSTIEGTNPS-----------LAIVDEYHLHTDNSVYSALELGQGARPEGLLFAITTAGS 229

Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292
                         D+    ++              +     +D+    I+      +  
Sbjct: 230 NVISACKQHY----DYCAQILEGNEQNDSLFVLIFELDEESEIDNPENWIKANPNIGKST 285

Query: 293 -----VNNF-----IPHNYIEEAMSREAIDDLYAPLIMG 321
                 N       IP  ++E    R  +        +G
Sbjct: 286 PYLDFENTIKKARGIPSEWVEMLTKRFNVWCQGTTPWLG 324


>gi|58261824|ref|XP_568322.1| hypothetical protein CNM01670 [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|134118443|ref|XP_772108.1| hypothetical protein CNBM1540 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50254715|gb|EAL17461.1| hypothetical protein CNBM1540 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57230495|gb|AAW46805.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1528

 Score = 45.3 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 60/186 (32%), Gaps = 25/186 (13%)

Query: 49  SQP-HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107
           + P   +Q E +                 +    ++   G+GKT +   +ML      P 
Sbjct: 290 NHPKRDYQFEIIRN-------------CFLDNTLVALPTGLGKTFVAGVVMLNFYRWFPT 336

Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
             I+ +A +           V++ +           +  ++      A    + +  + +
Sbjct: 337 GKIVFLAPTR--------PLVAQQIEACQLSCGIPSRDAAIMTGEGGARKGRERLWEEKR 388

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP-DIINKSILGFFTELNPNRFWIM 226
            +  T +T   +  +  V P     + V  DEA     +    +I+ + T  +P    + 
Sbjct: 389 VFYCTPQTLDNDLKNGAVDPR--DIVLVVLDEAHKATGNYAYTTIVAYITAHHPYFRVLA 446

Query: 227 TSNTRR 232
            + T  
Sbjct: 447 LTATPG 452


>gi|314967404|gb|EFT11503.1| conserved domain protein [Propionibacterium acnes HL082PA2]
          Length = 233

 Score = 45.3 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/208 (10%), Positives = 49/208 (23%), Gaps = 10/208 (4%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE--VSKWLSMLPHRHWFE 142
            R  GK  +   + L+  + + G  I+  A+     +          +     P  +   
Sbjct: 3   PRQNGKNAILEVVELFKATIQ-GRRILHTAHELKSARKAFMRLRSFFENERQFPDLYR-M 60

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
           ++S+          L         K          E    +           +  DEA  
Sbjct: 61  VKSIRATNGQEAIVLHHPDCATFEKKCGCPGWGSVEFVARSRGSARGFTVDDLVCDEAQE 120

Query: 203 TPDIINKSILGFFT-ELNPNRFWIMTSNTRRL---NGWFYDIFNIPLEDWKRYQIDTRTV 258
             D   +++L   +   + +   I                 +    L   KR+     ++
Sbjct: 121 LSDEQLEALLPTVSAAPSGDPQQIFLGTPPGPLADGSVVLRLRGQALSGGKRFAWTEFSI 180

Query: 259 EGIDSGFH--EGIISRYGLDSDVARIEI 284
                            G  +      +
Sbjct: 181 PDESDPDDVSRQWRKLAGDTNPALGRRL 208


>gi|256015606|ref|YP_003105615.1| type I restriction-modification enzyme, R subunit [Brucella microti
           CCM 4915]
 gi|255998266|gb|ACU49953.1| type I restriction-modification enzyme, R subunit [Brucella microti
           CCM 4915]
          Length = 967

 Score = 45.3 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 82/295 (27%), Gaps = 32/295 (10%)

Query: 7   TDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHC 66
           T    +  L  +L  A  +   +NFV+     G + K L  + Q          AV    
Sbjct: 218 TQTGQDILLAGLLAPANLLDLIRNFVVFETIGGRRIKKLARYQQ--------FVAVGKAI 269

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM--LWLISTRPGMSIICIANSETQLKNTL 124
                  NP      I   +G GK+    ++   L  +      +I+ + +         
Sbjct: 270 ERIRTAPNPQRRGGVIHHTQGSGKSLTMVFLATKLRRLPEAENPTIVIVTDRTDLDDQIT 329

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR-TYSEERPDT 183
                           F+    +        + L +++   +    +T    +    P  
Sbjct: 330 --------------GQFQRSGFANPIQAESGDSLRKALSGGAGTTVLTTVHKFHSAVPKR 375

Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR--RLNGWFYDIF 241
                    + V  DEA         ++        PN   I  + T   + +    + F
Sbjct: 376 SSVISKARNVFVMVDEAH---RTQYGALAARMRAGLPNACMIAFTGTPIDKKDRSTREAF 432

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
              L  +       +    +   + E   +R  +D      E+   FP+   +  
Sbjct: 433 GDYLHRY-LIDQAVKDGATVPIYY-EMRDARIRIDGRDFEREVRAAFPELSEDEI 485


>gi|145632703|ref|ZP_01788437.1| putative terminase of prophage [Haemophilus influenzae 3655]
 gi|144986898|gb|EDJ93450.1| putative terminase of prophage [Haemophilus influenzae 3655]
          Length = 555

 Score = 45.3 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/177 (11%), Positives = 40/177 (22%), Gaps = 21/177 (11%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ+     +      +            ++  R   K+T+ A +  W +    G   I 
Sbjct: 71  DWQVFLFANILGFKRKDTGLRKYRSAYVQVA--RKNAKSTVAAVLANWFLVMEGGQQDIY 128

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            A         ++ +  +   + P         L    +    +L+        +     
Sbjct: 129 TAAVSRDQARIVFDDARQMCLLSPL--------LKKRLNIQQHKLINPKNNSIMRPLAAK 180

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
             T     P                DE     D    S L       P       + 
Sbjct: 181 SSTIEGTNPS-----------LAIVDEYHLHTDNSVYSALELGQGARPEGLLFAITT 226


>gi|171690334|ref|XP_001910092.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945115|emb|CAP71226.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1993

 Score = 45.3 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/126 (12%), Positives = 28/126 (22%), Gaps = 16/126 (12%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               + +  G GKT      M W     PG  ++ IA  +  ++  +             +
Sbjct: 1159 NVLLGSPTGSGKTVAAELAMWWAFREHPGSKVVYIAPMKALVRERV-------------K 1205

Query: 139  HWFEMQSLSLHPSGWY-AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN--THGMAV 195
             W +  +  L                       I       +                 V
Sbjct: 1206 DWGDRLAKPLGLRLVELTGDNTPDTRTIQDADIIITTPEKWDGISRSWQTRGYVRKVSLV 1265

Query: 196  FNDEAS 201
              DE  
Sbjct: 1266 VIDEIH 1271


>gi|323146172|gb|ADX32410.1| terminase ATPase subunit [Cronobacter phage ENT90]
          Length = 587

 Score = 45.3 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 33/318 (10%), Positives = 80/318 (25%), Gaps = 27/318 (8%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
           FM+    +  +          +  + + R IG T   A   L    T  G + I ++ S+
Sbjct: 140 FMDNCFEYQLNWHKAGLDHRIRNILKS-RQIGATFYFAREALIDALTT-GRNQIFLSASK 197

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
            Q        +  +   +      +   L       +     ++    + +  +    + 
Sbjct: 198 AQAH-VFKNYIIDFARQVDVDLKGDPIVLPNGARLIFLGTNVRTAQSYTGNLYLDEYFWI 256

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL---NPNRFWIMTSNTRRLN 234
            +  +             +      TP  ++ S   F++        R           +
Sbjct: 257 PKFQELRKVASGMSLHKKWRTTYFSTPSSLSHSAYPFWSGELFNKGRRSKADRIEIDLSH 316

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294
                        W++       + G  + F    +      S+  +  ++ +F   +  
Sbjct: 317 THLAKGALCGDGQWRQIVTVEDALTGGCNLFDLDQLQLEYSPSE-YQNLLMCEFVD-DEA 374

Query: 295 NFIPHNYIEEAMSREAI-----------DDLYAPLIMGCDIAGEGGDKTVVVFRRGN--- 340
           +  P   ++  M                   Y P+ +G D +  G D             
Sbjct: 375 SVFPFAELQTCMIDSLEEWSDFNPYLPRPFDYRPVWIGYDPSHTG-DSAGCAVIAPPLVA 433

Query: 341 ----IIEHIFDWSAKLIQ 354
                +     W      
Sbjct: 434 GGKFRVLERHQWRGMDFA 451


>gi|207344536|gb|EDZ71650.1| YHR164Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1435

 Score = 45.3 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 51/173 (29%), Gaps = 6/173 (3%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKTT+ A ++   I    G  ++  + + + + N L    +  +S++      ++   
Sbjct: 1077 GTGKTTVIAEII--KILVSEGKRVLLTSYTHSAVDNILIKLRNTSISIMRLGMKHKVHPD 1134

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
            +      YA +   +  +   + T    T      D     +      V  DEAS     
Sbjct: 1135 TQKYVPNYASVKSYNDYLSKINSTSVVATTCLGINDILFTLNEKDFDYVILDEASQIS-- 1192

Query: 207  INKSILGFFTELNPNRFWIMTSN-TRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
                 LG     N              +      +  +    +K +       
Sbjct: 1193 -MPVALGPLRYGNRFIMVGDHYQLPPLVKNDAARLGGLEESLFKTFCEKHPES 1244


>gi|331091430|ref|ZP_08340268.1| PBSX family phage terminase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330403986|gb|EGG83536.1| PBSX family phage terminase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 441

 Score = 45.3 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 71/267 (26%), Gaps = 44/267 (16%)

Query: 79  KCAISAGR-GIGKTTL-NAWMMLWLISTR---PGMSIICIANSETQLKNTLWAEVSKWLS 133
           +  + +G    GK+ +  A+++ + I  R   PG+++I   + E+  +N L      +  
Sbjct: 17  RWNVKSGAVRSGKSYVDTAFVIPFRIRERAGKPGLNVILGVSKESIERNVLQPMREIYTD 76

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
            L                         +    ++           E+             
Sbjct: 77  KLIGN---------------------INNRNVARICGEDVYCLGAEKISQVAKIQGASIK 115

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS-NTRRLNGWFYDIFNIPLEDWKRYQ 252
             + DE +     + + +       +        S N      W  +  +    D    +
Sbjct: 116 YCYGDEVAKWNKEVFQMLKSRL---DKPYSCFDGSCNPEHPTHWLKEFLDNDELDIYLQR 172

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ----------QEVNNFIPHNYI 302
                   +   F + +   Y   +      ILG + +             + F      
Sbjct: 173 YTIFDNPFLPEEFVQQLCKEY-EGTIYYDRLILGLWKRAEGAIYKRFADNPDKFRCEVVD 231

Query: 303 EEAMSREAIDDLYAPLI---MGCDIAG 326
           E  M  +        ++   +G D  G
Sbjct: 232 ELTMETDIKQFRKDDIVSIEIGLDFGG 258


>gi|320168199|gb|EFW45098.1| DEAD box polypeptide 49 [Capsaspora owczarzaki ATCC 30864]
          Length = 611

 Score = 45.3 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 55/199 (27%), Gaps = 32/199 (16%)

Query: 38  WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97
           W +K         P   Q+  ++ V                     A  G GKT   A  
Sbjct: 188 WLVKQCEAMGLKHPTDIQVNTIKHVLAG------------RNVIGCAKTGSGKTAAFALP 235

Query: 98  MLWLISTRP-GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
           +L  +S  P G   + +  +         AE  + L    +        L         +
Sbjct: 236 ILHRLSDDPYGPFAVVLTPTRELAFQI--AEQFRALGKGIN--------LREAVVVGGVD 285

Query: 157 LLEQSMGIDSKHYTITCRTYSEERP-DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
           +++QS+ +  + + I           ++           +  DEA    +          
Sbjct: 286 MMQQSLVLAKRPHVIIATPGRLADHLNSNSQLSLARARFLVLDEADRLLEEGF------- 338

Query: 216 TELNPNRFWIMTSNTRRLN 234
              + NR     SN +R  
Sbjct: 339 -SPDLNRILAAASNPQRQT 356


>gi|220919093|ref|YP_002494397.1| type III restriction protein res subunit [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219956947|gb|ACL67331.1| type III restriction protein res subunit [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 1033

 Score = 45.3 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 64/213 (30%), Gaps = 33/213 (15%)

Query: 43  KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102
            P     +P+ +Q   +E +       V       +K  + A  G GKT + A+     +
Sbjct: 306 TPFFFDLRPYEYQRAILEKL------RVEREEHGRWKNLVVAATGTGKTMIAAFDYAAQV 359

Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
                  ++ +A+ E  L+  L A    + ++L    + E+      P+ +         
Sbjct: 360 KDGVRPRLLFVAHREEILEQALHA----FRNVLRDHSFGELLKGGSTPASYEH------- 408

Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222
                   +     S +R D        +   V  DE           +L       P  
Sbjct: 409 --------LFATIQSLDRKDLPAALGRDYWHTVIVDEFHHAAAKTYGLLLEAVA---PKI 457

Query: 223 FWIMTSNTRRLN-----GWFYDIFNIPLEDWKR 250
              +T+   R +     GWF       +  W  
Sbjct: 458 LLGLTATPERADGLDVLGWFDHHVAADIRLWHA 490


>gi|28897279|ref|NP_796884.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260876244|ref|ZP_05888599.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AN-5034]
 gi|260896422|ref|ZP_05904918.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus Peru-466]
 gi|260902727|ref|ZP_05911122.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ4037]
 gi|28805488|dbj|BAC58768.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308088406|gb|EFO38101.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus Peru-466]
 gi|308092964|gb|EFO42659.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AN-5034]
 gi|308107646|gb|EFO45186.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ4037]
 gi|328472043|gb|EGF42920.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus 10329]
          Length = 407

 Score = 45.3 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 45/318 (14%), Positives = 83/318 (26%), Gaps = 50/318 (15%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           +      + +P + Q E +                       SA  G GKT       L 
Sbjct: 16  EAIEEMGYERPTKIQAEAIPQALDG------------RDILASAPTGTGKTAAFVLPALQ 63

Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
            +   P        I+ +  +         A+ ++ L+     + F +     +      
Sbjct: 64  YLQDFPRRKPGPARILILTPTRELAMQV--ADQARALAKNTKLNIFTITGGVQYQEHADI 121

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
               Q +        +                       +  DEA    D+     +   
Sbjct: 122 LATTQDI--------VVATPGRLREYIDAERFDCRAIEWLVLDEADRMLDMGFAPTVDRL 173

Query: 216 TELNPNRFWIMTSNTR----RLNGWFYDIFNIP---------LEDWKRYQIDTR-TVEGI 261
           +     R   +  +       + G+  D+ N P          E  K  Q   R      
Sbjct: 174 SNECRWRKQTLLFSATLEGKGVEGFTADLLNEPAEIDAKSPLRERKKIAQWYHRADSAEH 233

Query: 262 DSGFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AID 312
                + II+     + V     E L +   Q  +  IP ++I  E    R         
Sbjct: 234 KLALLKHIITEQAERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAIARFR 293

Query: 313 DLYAPLIMGCDIAGEGGD 330
           D    +++  D+A  G D
Sbjct: 294 DGTVNVLLATDVAARGID 311


>gi|328854149|gb|EGG03283.1| hypothetical protein MELLADRAFT_49560 [Melampsora larici-populina
           98AG31]
          Length = 1103

 Score = 45.3 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 64/229 (27%), Gaps = 24/229 (10%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q + +            +S       A++A RG GK+     + +         +I   +
Sbjct: 270 QAKALMEFTSSITEKTLSST-----VALTAARGRGKSAAL-GLAITAAIAHSYSNIFVTS 323

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            S   LK   +  + K L  + +    +          W+  ++   +    +      +
Sbjct: 324 PSPENLKTV-FEFIFKGLDAIGYEEHLDYDIHQSTNPEWHNCVVRIDIFRQHR------Q 376

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
           T     P  +          V  DEA+  P    K+++G +       F   T N     
Sbjct: 377 TIQYIEPQDYKVLG--QAELVVIDEAAAIPIGFVKNLIGPYL-----VFMASTINGYEGT 429

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283
           G    +  I        +     V    +   +        D  V   +
Sbjct: 430 GRSLSLKLIAQLRELSRKP----VPITTATNRDQEDGPSSTDKAVTHQK 474


>gi|320035315|gb|EFW17257.1| conserved hypothetical protein [Coccidioides posadasii str. Silveira]
          Length = 1870

 Score = 45.3 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 28/283 (9%), Positives = 71/283 (25%), Gaps = 40/283 (14%)

Query: 50   QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
            +P  WQ + ++ +D                  + A    GKT ++ + M  ++       
Sbjct: 825  EPDEWQRKVLDEIDA------------KRSLFVVAPTSAGKTFISFYAMKKVLEDDDDGV 872

Query: 110  IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
            ++ +A ++  +        +++     H         +           +  + +    +
Sbjct: 873  LVYVAPTKALVNQIAAEIQARFSKSFKHGGKSVWGIHTRDYRINNPTGCQVLVTV---PH 929

Query: 170  TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
             +     S     ++    ++    +  DE      + +  +      L      I  S 
Sbjct: 930  ILQIMLLSPANATSW----SSRVKRIIFDEVHCIGQVDDGVVWEQLLLL-APCPIIALSA 984

Query: 230  TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
            T      F     +  +      +         S   + +       S     E +    
Sbjct: 985  TIGNPQKFCKWLQMTQKA-NGIDLTMIEHSHRYSDLRKYVYKPPKSISGSGSFERM---- 1039

Query: 290  QQEVNNFIPHNYIEEAMSREAID-------DLYAPLIMGCDIA 325
                    P +   EA     +            P+    D A
Sbjct: 1040 --------PDDLTLEARDCWMLWRAMMKYQSQDFPVEKYLDPA 1074


>gi|218700350|ref|YP_002407979.1| putative phage terminase large subunit [Escherichia coli IAI39]
 gi|218370336|emb|CAR18139.1| putative phage terminase large subunit [Escherichia coli IAI39]
          Length = 553

 Score = 45.3 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 33/261 (12%), Positives = 56/261 (21%), Gaps = 27/261 (10%)

Query: 23  ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82
           E V  F  F        +KG       +   WQ      +             T     +
Sbjct: 43  EVVERFIAFSRV--CPHVKGPMRGRPIELEPWQQFAFACILGFKVKATGRRKYTSAFIEV 100

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
              R   K+T  A +  W +    G   I  A         ++ +  +            
Sbjct: 101 --PRKNAKSTTAAILANWFLIMENGQQDIYTAAVSRDQARIVFDDARQMC--------LL 150

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
            + L    +    +++        K       T     P                DE   
Sbjct: 151 SRPLRRRVNIQAHKVIHPKSNSLLKPLAAKAATIEGTNPS-----------LSIVDEYHL 199

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
            PD    S L       P       + +                D+    +D   V    
Sbjct: 200 HPDNGVYSALELGMGARPEGLLFAITTSGSNVVSACKQHY----DYCCQILDGEEVNDSI 255

Query: 263 SGFHEGIISRYGLDSDVARIE 283
                 +     +D     I+
Sbjct: 256 FVLIYELDDENEVDDPAMWIK 276


>gi|254820583|ref|ZP_05225584.1| type III restriction enzyme, res subunit [Mycobacterium
           intracellulare ATCC 13950]
          Length = 1033

 Score = 45.3 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 47/188 (25%), Gaps = 31/188 (16%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PG 107
            P  +Q E +E +      +         +  I A  G GKT + A     L+  R    
Sbjct: 311 HPKPFQEEMLEEL------DAERVLHDRHRNLIVAATGTGKTVVAALDYRRLVRERHGRD 364

Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
           + ++ +A+           E+      +      E     L   G               
Sbjct: 365 LKLLFVAHR---------KEILMQARRMYQEVLTESTFGELLIGG-----------DQPT 404

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
            +     +               +   V  DE          S       + P     +T
Sbjct: 405 KWRHVFASIQSLSAGRLATIEADYFDVVVIDEFH---HAEAASYRRLLQHVRPMELLGLT 461

Query: 228 SNTRRLNG 235
           +   R +G
Sbjct: 462 ATPERGDG 469


>gi|330967816|gb|EGH68076.1| hypothetical protein PSYAC_24858 [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 774

 Score = 45.3 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 34/295 (11%), Positives = 65/295 (22%), Gaps = 28/295 (9%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA--NSETQLKNTLWAEVSKWLSM-LPHR 138
           I   R +G T   A              +   A        ++ + A    W  + L   
Sbjct: 177 ILKSRQVGLTYYFAGEAFMDAVLTGDNQVFLSASRAQSEIFRSYIIAFAQSWFGLELTGN 236

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT----CRTYSEERPDTFVGPHNTHGMA 194
                +         +      +      H  +      R + +          +     
Sbjct: 237 PIVLSKDGKPWAELRFLSTNSSTAQGHHGHVYVDEYFWIRDFEKLNTVASAMAPHKKWRK 296

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254
            +    S           G     +  +      +    +         P   W++    
Sbjct: 297 TYFSTPSAVSHQAYPFWQGEKFRNSKRK---AAKDPWPSDKQISAGALCPDGQWRKVITI 353

Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS---REAI 311
              + G    F    +     D D  +   + +F     + F     +E   S     A 
Sbjct: 354 LDAISGGCDLFDLEQLQLEY-DEDKFQQLFMCKFIDSSQSAF-SLADLERCYSDLSLWAD 411

Query: 312 DDLYAP-------LIMGCDIAGEGGDKTVVVFRRGN------IIEHIFDWSAKLI 353
            D   P       + +G D +    D T VV            I     W  +  
Sbjct: 412 FDPDDPRLYGNSPVWIGYDPSRTRDDATCVVIAPPLENGGKFRILEKHSWRGQSF 466


>gi|190405942|gb|EDV09209.1| DNA replication helicase [Saccharomyces cerevisiae RM11-1a]
          Length = 1522

 Score = 45.3 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 51/173 (29%), Gaps = 6/173 (3%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKTT+ A ++   I    G  ++  + + + + N L    +  +S++      ++   
Sbjct: 1077 GTGKTTVIAEII--KILVSEGKRVLLTSYTHSAVDNILIKLRNTSISIMRLGMKHKVHPD 1134

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
            +      YA +   +  +   + T    T      D     +      V  DEAS     
Sbjct: 1135 TQKYVPNYASVKSYNDYLSKINSTSVVATTCLGINDILFTLNEKDFDYVILDEASQIS-- 1192

Query: 207  INKSILGFFTELNPNRFWIMTSN-TRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
                 LG     N              +      +  +    +K +       
Sbjct: 1193 -MPVALGPLRYGNRFIMVGDHYQLPPLVKNDAARLGGLEESLFKTFCEKHPEN 1244


>gi|95116637|ref|NP_041153.2| ORF62 [Ictalurid herpesvirus 1]
 gi|114152910|sp|Q00140|VTER_ICHVA RecName: Full=Probable DNA-packaging protein; AltName:
           Full=Terminase
 gi|94449348|gb|AAA88166.2| ORF62 [Ictalurid herpesvirus 1]
          Length = 734

 Score = 45.3 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 44/144 (30%), Gaps = 8/144 (5%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
            A R  GKTT+   ++L  + +   + I+  A     +  TL+  V   L  + H  W+ 
Sbjct: 189 LAPRQCGKTTIM-VILLAAMISYLDIEIVVQA-QHKTMCETLYDRVELVLHEIQHSPWYP 246

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
            ++  +   G                  +   + S                 V  DEA+ 
Sbjct: 247 EENRIVTIKGTTETREFIYDPAYKGTTRVHFLSSS------PNAARGQIPDFVLIDEAAF 300

Query: 203 TPDIINKSILGFFTELNPNRFWIM 226
                  S+L      N  +  I 
Sbjct: 301 VNPASLLSLLPLLAVKNRKQIHIS 324


>gi|270209588|gb|ACZ64128.1| terminase [Enterococcus phage phiFL3B]
          Length = 427

 Score = 45.3 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 28/253 (11%), Positives = 71/253 (28%), Gaps = 23/253 (9%)

Query: 94  NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
            A +++  +  R  ++ + I   +  ++ +++ ++   +       +F++    +     
Sbjct: 42  IAHIIV-QLIMRYPVNAVAIRYVDNTIELSIFEQIKWAIEEQGVSKYFKVNKSPMK---- 96

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSIL 212
                   +    +   I  R          +          + +E A    +   K+I 
Sbjct: 97  --------ITYKPRGNYIVFRGAQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTIT 148

Query: 213 GFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDWKRYQIDTRTVEGIDSGF 265
                          +  + N   R   W    +      E+   +    +    I   F
Sbjct: 149 NSLLRGELADGLFYKFFYSYNPPKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAF 208

Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
            E + +    +   A  E  G+     V  F     I+  +  + +   +  +  G D  
Sbjct: 209 IEEVNATRAKNPKRAEWEYDGKAIGSGVVPFDNLRVIKGCI-TDEMVANFDNIRNGLDF- 266

Query: 326 GEGGDKTVVVFRR 338
           G   D    V   
Sbjct: 267 GYATDPLAFVRWH 279


>gi|242815191|ref|XP_002486521.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218714860|gb|EED14283.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 2030

 Score = 45.3 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/123 (12%), Positives = 32/123 (26%), Gaps = 10/123 (8%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               + +  G GKT      M W    RPG  ++ IA  +  ++  +     +  + +  +
Sbjct: 1159 NVLLGSPTGSGKTVACELAMWWAFRERPGSKVVYIAPMKALVRERVQDWRKRLTAAMGLK 1218

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               E+   +   +    +        +                             V  D
Sbjct: 1219 -LVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRGYV---------RQVSLVIID 1268

Query: 199  EAS 201
            E  
Sbjct: 1269 EIH 1271


>gi|71030350|ref|XP_764817.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68351773|gb|EAN32534.1| hypothetical protein, conserved [Theileria parva]
          Length = 928

 Score = 45.3 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 69/227 (30%), Gaps = 18/227 (7%)

Query: 69  NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
           N+           I + RG GK+     + L         +I+ +A +   +   L+  +
Sbjct: 265 NIILEESDRKIVTILSDRGRGKSATI-GLFLSSALQLDFRNILIVAPNVENVST-LFDFL 322

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
            + L  L    +             Y +L ++              +   + P+      
Sbjct: 323 QRGLKCLGIDEYSGYTVTRTEGYPSYLKLNKR------NSGVKFMSSTEIKNPE--EFIK 374

Query: 189 NTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW 248
                 +  +EA+  P  I   +         ++  ++ S+T           ++ L   
Sbjct: 375 MFSWDILIIEEAASIPLPIVDVL--------SSKGIVIISSTTGGYEGTGRSISLKLIQK 426

Query: 249 KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN 295
            +  + + T+  I             ++S +  +  L  F  + +++
Sbjct: 427 FKKTLSSDTLSEITLKQPIRYARNDPIESWLNSLLCLNTFKDEGIDS 473


>gi|172056647|ref|YP_001813107.1| DEAD/DEAH box helicase domain-containing protein [Exiguobacterium
           sibiricum 255-15]
 gi|171989168|gb|ACB60090.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sibiricum
           255-15]
          Length = 391

 Score = 45.3 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 49/211 (23%), Gaps = 15/211 (7%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR-PGMSI 110
             W+    E +                   + A  G GKT       L LI    P + +
Sbjct: 10  EAWERARFEKMM-PVQEQAIPLLRERKDVLVEAPTGTGKTLAYVIPALELIDENEPHIQV 68

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           +  A +   +       + + + +           +         EL  Q   +  K   
Sbjct: 69  VITAPTRELVMQ-----IHQVIQLFSQG-----SGIKSGAFIGGVELKRQHERLKKKPQI 118

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN- 229
           I                       +  DEA    +    +              +   + 
Sbjct: 119 IVGTPGRLVELIDSKKMKMHKVKLIVLDEADQIYESGMSASATRIANSALRDRQLAFISA 178

Query: 230 --TRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
               R   W   +F    E  K  ++ +  V
Sbjct: 179 TLPERTAEWGKTLFANEPERIKVERVMSTQV 209


>gi|291556509|emb|CBL33626.1| Superfamily II DNA/RNA helicases, SNF2 family [Eubacterium siraeum
           V10Sc8a]
          Length = 454

 Score = 45.3 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 74/278 (26%), Gaps = 34/278 (12%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN-AWMMLWLISTRPGM 108
           +PH +Q   +  ++ H  + V                G+GKT++  A +   L  +    
Sbjct: 4   EPHEYQRYAINYIEEHPFAAVLLDM------------GLGKTSITLAAIADLLFDSFEVH 51

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            ++ IA      ++T  AE+ KW       +   + S +   +    +     +  ++  
Sbjct: 52  KVLVIAP-LRVARDTWSAELQKWDQFHQLTYSVAVGSEAERKAALTRKADIYIINRENVQ 110

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
           + I                       V  DE S   +  +K            +  +  +
Sbjct: 111 WLIEKSKLP------------FDFDMVVVDELSSFKNHQSKRFKALMQVRPRIKRVVGLT 158

Query: 229 NTRRLNGWFYDIFNIPL-------EDWKRYQIDTRTVEGIDSGFH-EGIISRYGLDSDVA 280
            T   NG         +         +  Y      V    +G        + G +  + 
Sbjct: 159 GTPASNGLMDLWAEFKVIDMGKRLGRFITYYRQEYFVPDATNGQIVYSYRPKLGAEQAIY 218

Query: 281 RIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
           R         +  ++      I          D     
Sbjct: 219 RQISDITISMKSTDHLKMPKLISSEYKVYLSPDEQDAY 256


>gi|269839449|ref|YP_003324141.1| NERD domain protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269791179|gb|ACZ43319.1| NERD domain protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 559

 Score = 45.3 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/179 (11%), Positives = 46/179 (25%), Gaps = 5/179 (2%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
             Q    E +      N+  +     + A++   G GKT L             G+ ++ 
Sbjct: 208 EAQNRRFEELTQG-QRNILLAMSEYRRLAVAGCAGSGKTFLAMEQA--YRLVSQGLRVLF 264

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP--SGWYAELLEQSMGIDSKHYT 170
             ++         +       +  + H  E   +++        +    + +    K   
Sbjct: 265 TCHNRALADWVRESLTKTLGGLPDNLHVDEFDGVAIELCRRHGVSVPDPERLSEAQKTEF 324

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                                  AV  DEA     +    +LG   +      +I   +
Sbjct: 325 YRETLPELLDTALGHMTQEDKFDAVVVDEAQDFHVLRWGPLLGLLKDPGEGHLYIFYDS 383


>gi|194901062|ref|XP_001980071.1| GG16932 [Drosophila erecta]
 gi|190651774|gb|EDV49029.1| GG16932 [Drosophila erecta]
          Length = 2183

 Score = 45.3 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/175 (12%), Positives = 42/175 (24%), Gaps = 20/175 (11%)

Query: 45   LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            L  F+  +  Q +    +    H              + A  G GKT +    +   ++ 
Sbjct: 1331 LYKFTHFNPIQTQIFHCLYHTDH-----------NVLLGAPTGSGKTIVAEIAIFRALNQ 1379

Query: 105  RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
             P   ++ IA  +  +K  +     ++          E+            E        
Sbjct: 1380 NPKCKVVYIAPLKALVKERIGDWEQRFQRSSLGLKVVELTGDVTPDIQAIRESQLIVTTP 1439

Query: 165  DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
            +            E            H   +  DE     +     I    +  N
Sbjct: 1440 EKWDGISRSWQTREYV---------QHVSLIVIDEIHLLGEDRGPVIEVIVSRTN 1485


>gi|333008357|gb|EGK27831.1| phage Terminase family protein [Shigella flexneri K-272]
 gi|333019844|gb|EGK39116.1| phage Terminase family protein [Shigella flexneri K-227]
          Length = 553

 Score = 45.3 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 33/261 (12%), Positives = 56/261 (21%), Gaps = 27/261 (10%)

Query: 23  ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82
           E V  F  F        +KG       +   WQ      +             T     +
Sbjct: 43  EVVERFIAFSRV--CPHVKGPMRGRPIELEPWQQFAFACILGFKVKATGRRKYTSAFIEV 100

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
              R   K+T  A +  W +    G   I  A         ++ +  +            
Sbjct: 101 --PRKNAKSTTAAILANWFLIMENGQQDIYTAAVSRDQARIVFDDARQMC--------LL 150

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
            + L    +    +++        K       T     P                DE   
Sbjct: 151 SRPLRRRVNIQAHKVIHPKSNSLLKPLAAKAATIEGTNPS-----------LSIVDEYHL 199

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
            PD    S L       P       + +                D+    +D   V    
Sbjct: 200 HPDNGVYSALELGMGARPEGLLFAITTSGSNVVSACKQHY----DYCCQILDGEEVNDSI 255

Query: 263 SGFHEGIISRYGLDSDVARIE 283
                 +     +D     I+
Sbjct: 256 FVLIYELDDENEVDDPAMWIK 276


>gi|261492408|ref|ZP_05988965.1| phage Terminase [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261495943|ref|ZP_05992361.1| phage Terminase [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261308403|gb|EEY09688.1| phage Terminase [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261311937|gb|EEY13083.1| phage Terminase [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 567

 Score = 45.3 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 35/321 (10%), Positives = 80/321 (24%), Gaps = 59/321 (18%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL--ISTRPGMS 109
             WQL  +         + N       +  +   R  GK+ ++A + L++  +    G  
Sbjct: 81  EPWQLFIVANAFGWLRKSNN--LRRYREIYVEVPRKNGKSAISAGVGLYMFCMDNEFGAE 138

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM-GIDSKH 168
           +   A +E Q                        +   L  S +  E+   ++       
Sbjct: 139 VYSGATTEKQAWEVFRP------------ARLMCKKTDLLCSTFGIEVNASNLNRPSDGS 186

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPNRFWIMT 227
                     +                  DE      D +  ++L           +I+T
Sbjct: 187 RFEPLIGSPGD---------GASPSCAIVDEYHEHKNDELYTTMLTGMGARKQPLMFIIT 237

Query: 228 SNTRRLNGWFYDIFN----------------------IPLEDWKRYQIDTRTVEGIDSGF 265
           +    + G  YD                            +DW    +  +     D   
Sbjct: 238 TAGYNIEGPCYDKRREVIEKLNGAIPNDELFGIIYTIDEDDDWTDESVLRKANPNFDVSV 297

Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY-------IEEAMSREAIDD--LYA 316
           +   +     +  +    +   F  + +N ++            E         +     
Sbjct: 298 YGDYL-ISQQNKAINNARLTNTFKTKHLNVWVSAKESFFNMVSWENCKDESLSLNDFQDD 356

Query: 317 PLIMGCDIAGEGGDKTVVVFR 337
            + +G D+A +    ++V   
Sbjct: 357 EVYLGLDMARKLDMNSLVKVF 377


>gi|218689523|ref|YP_002397735.1| putative phage terminase large subunit [Escherichia coli ED1a]
 gi|218427087|emb|CAR07966.2| putative phage terminase large subunit [Escherichia coli ED1a]
          Length = 553

 Score = 45.3 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 33/261 (12%), Positives = 56/261 (21%), Gaps = 27/261 (10%)

Query: 23  ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82
           E V  F  F        +KG       +   WQ      +             T     +
Sbjct: 43  EVVERFIAFSRV--CPHVKGPMRGRPIELEPWQQFAFACILGFKVKATGRRKYTSAFIEV 100

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
              R   K+T  A +  W +    G   I  A         ++ +  +            
Sbjct: 101 --PRKNAKSTTAAILANWFLIMENGQQDIYTAAVSRDQARIVFDDARQMC--------LL 150

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
            + L    +    +++        K       T     P                DE   
Sbjct: 151 SRPLRRRVNIQAHKVIHPKSNSLLKPLAAKAATIEGTNPS-----------LSIVDEYHL 199

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
            PD    S L       P       + +                D+    +D   V    
Sbjct: 200 HPDNGVYSALELGMGARPEGLLFAITTSGSNVVSACKQHY----DYCCQILDGEEVNDSI 255

Query: 263 SGFHEGIISRYGLDSDVARIE 283
                 +     +D     I+
Sbjct: 256 FVLIYELDDENEVDDPAMWIK 276


>gi|110805154|ref|YP_688674.1| putative terminase of prophage CP-933C [Shigella flexneri 5 str.
           8401]
 gi|110614702|gb|ABF03369.1| putative terminase of prophage [Shigella flexneri 5 str. 8401]
          Length = 553

 Score = 45.3 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 33/261 (12%), Positives = 56/261 (21%), Gaps = 27/261 (10%)

Query: 23  ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82
           E V  F  F        +KG       +   WQ      +             T     +
Sbjct: 43  EVVERFIAFSRV--CPHVKGPMRGRPIELEPWQQFAFACILGFKVKATGRRKYTSAFIEV 100

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
              R   K+T  A +  W +    G   I  A         ++ +  +            
Sbjct: 101 --PRKNAKSTTAAILANWFLIMENGQQDIYTAAVSRDQARIVFDDARQMC--------LL 150

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
            + L    +    +++        K       T     P                DE   
Sbjct: 151 SRPLRRRVNIQAHKVIHPKSNSLLKPLAAKAATIEGTNPS-----------LSIVDEYHL 199

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
            PD    S L       P       + +                D+    +D   V    
Sbjct: 200 HPDNGVYSALELGMGARPEGLLFAITTSGSNVVSACKQHY----DYCCQILDGEEVNDSI 255

Query: 263 SGFHEGIISRYGLDSDVARIE 283
                 +     +D     I+
Sbjct: 256 FVLIYELDDENEVDDPAMWIK 276


>gi|108797804|ref|YP_638001.1| hypothetical protein Mmcs_0827 [Mycobacterium sp. MCS]
 gi|119866897|ref|YP_936849.1| hypothetical protein Mkms_0844 [Mycobacterium sp. KMS]
 gi|108768223|gb|ABG06945.1| conserved hypothetical protein [Mycobacterium sp. MCS]
 gi|119692986|gb|ABL90059.1| conserved hypothetical protein [Mycobacterium sp. KMS]
          Length = 563

 Score = 45.3 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 45/163 (27%), Gaps = 6/163 (3%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
            +  +A+  H  + + ++   + +  +  G G GKT L       L     G  +  +  
Sbjct: 212 EDAADALTEH-QAIILDAIRLLNRVEVRGGAGSGKTFLAMEQARRLAQR--GQRVALVCY 268

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
           S   L + L      W       +  E  +L +                  + +      
Sbjct: 269 S-HGLASYLERICETWPRRQQPAYVGEFHALGVQWGAPEGPDEALRTEETVRFWEHDLPL 327

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218
           +  +        H      +  DEA    D     +L    + 
Sbjct: 328 HMADLAAQLEPGHRFDS--IVVDEAQDFADAWWDPLLAALRDP 368


>gi|289619804|emb|CBI54087.1| unnamed protein product [Sordaria macrospora]
          Length = 1773

 Score = 45.3 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/248 (10%), Positives = 65/248 (26%), Gaps = 22/248 (8%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           +P  WQ + ++A+D                  + A    GKT ++ + M  ++       
Sbjct: 707 EPDAWQRKVLDAIDEDKS------------LLVVAPTSAGKTFISFYAMKKILEANNDDV 754

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           ++ IA ++  +        +++               +        +  +  + +     
Sbjct: 755 LVYIAPTKALVNQIAAEIQARFSKRYDQDAKSVWAIHTRDYRINNVKGCQILVTVPDILQ 814

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM--- 226
            +     +   P +F          +  DE           +      L P     +   
Sbjct: 815 ILLLSPSNAAGPTSF----ARRIKRIIFDEVHCIGQSEEGLVWEQLLLLAPCPIIALSAT 870

Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
             N      W  +       + +     +R  +     F           +    +E L 
Sbjct: 871 VGNPLEFRDWLRNAQKAKGHELEMVVHTSRYSDLR--KFIHDPAPGTYEFTGFEPVERL- 927

Query: 287 QFPQQEVN 294
            FP  + +
Sbjct: 928 PFPGLDSD 935


>gi|186895208|ref|YP_001872320.1| hypothetical protein YPTS_1896 [Yersinia pseudotuberculosis PB1/+]
 gi|186698234|gb|ACC88863.1| protein of unknown function DUF264 [Yersinia pseudotuberculosis
           PB1/+]
          Length = 587

 Score = 45.3 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 33/325 (10%), Positives = 72/325 (22%), Gaps = 34/325 (10%)

Query: 60  EAVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           E++  +  +         ++   +   R +G T   +W  L       G + + ++ S+ 
Sbjct: 142 ESMFDYQRNWYEAGLSPDYRIRNLLKSRQVGATYFFSWEALLDALDT-GRNQMFVSASKA 200

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK----HYTITCR 174
           Q        +      +      E+  L       +      +                 
Sbjct: 201 QAHQ-FKNYIVAAARQVDVDLRGEVIILPNGAEMHFLGTNASTAQGRPGNLYLDEYFWIP 259

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP---NRFWIMTSNTR 231
            + + R             + +    S T         G           R  I  S  R
Sbjct: 260 GFQKLRRAASGMASQKKYRSTYFSTPSSTSHEAYPFWAGTLFNKGKAKDKRIEIDVSYPR 319

Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
              G   +      + +++       ++G    F    +     D D      +  F   
Sbjct: 320 LAGGRLCED-----KQYRQIVTIEDALKGGCDLFDIDELRNENSDQD-FENLFMCGFIDD 373

Query: 292 EVNNFIPHNYIEEAMSREAIDD----------LYAPLIMGCDIAGEGGDKTVVVFRRGNI 341
             + F         +                    P+ +G D A  G D          +
Sbjct: 374 NASTFKLAEMQRCMVDSWEKWTDVKLLALRPFGDRPVWIGYDPASTG-DSAGCAVIAPPV 432

Query: 342 -------IEHIFDWSAKLIQETNQE 359
                  +     W      +    
Sbjct: 433 VAGGKFRVLERHQWKGMDFADQASN 457


>gi|296271906|ref|YP_003654537.1| type III restriction protein res subunit [Arcobacter nitrofigilis
           DSM 7299]
 gi|296096081|gb|ADG92031.1| type III restriction protein res subunit [Arcobacter nitrofigilis
           DSM 7299]
          Length = 923

 Score = 45.3 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 56/188 (29%), Gaps = 37/188 (19%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q E +  +  H             K  + A  G GKT L A    + +       ++ I 
Sbjct: 190 QEEALYNLQ-HLRDKRQT------KALVLAATGTGKTYLAA----FDVKAYEPKRVLFIV 238

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
           +     +N L    + +  ++ ++                         ID ++   T +
Sbjct: 239 HR----ENILIKAKNSFEKIISNKTMGLYTGNKK--------------EIDKEYLFTTIQ 280

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR-L 233
           T S      +          +  DEA        + +  +F    P     +T+   R  
Sbjct: 281 TMS----SNYENFLKEEFDYIIIDEAHHITSPSYEKVCDYF---EPKFLLGLTATPNRSD 333

Query: 234 NGWFYDIF 241
            G  Y++F
Sbjct: 334 EGNIYEVF 341


>gi|289619624|emb|CBI53907.1| unnamed protein product [Sordaria macrospora]
          Length = 2051

 Score = 45.3 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 36/154 (23%), Gaps = 22/154 (14%)

Query: 58   FMEAVDVHCHSNVNNSNPTIF--------KCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
             +E +        N     +F           + +  G GKT      M W    RPG  
Sbjct: 1170 ALEEIYAQRFQYFNPMQTQVFHTLYHTPANVLLGSPTGSGKTVACELAMWWAFRERPGSK 1229

Query: 110  IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
            ++ IA  +  ++      V  W + L      ++  L                       
Sbjct: 1230 VVYIAPMKALVRER----VKDWGARLAKPLGLKLVEL--------TGDNTPDTRTIQDAD 1277

Query: 170  TITCRTYSEERPDTFVGPHN--THGMAVFNDEAS 201
             I       +                 V  DE  
Sbjct: 1278 IIITTPEKWDGISRSWQTRGYVRKVSLVIIDEIH 1311


>gi|209694846|ref|YP_002262774.1| putative helicase (DEAD/DEAH box helicase) [Aliivibrio salmonicida
           LFI1238]
 gi|208008797|emb|CAQ78997.1| putative helicase (DEAD/DEAH box helicase) [Aliivibrio salmonicida
           LFI1238]
          Length = 434

 Score = 45.3 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/273 (9%), Positives = 70/273 (25%), Gaps = 40/273 (14%)

Query: 87  GIGKTTLNAWMMLWLIST------RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           G GKT   A  ++  +        R     + +A +    +      +S          +
Sbjct: 48  GTGKTAAFALPVIQRLLDTKKSATRRSARALILAPTRELAEQIAVNIIS----------Y 97

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
            +  SL +       ++  Q   +D     +       +           +   +  DEA
Sbjct: 98  TKYTSLKVTAVFGGKKMSSQERALDPGVDILVATPGRLQEHIEEGNVSIANLEFLVFDEA 157

Query: 201 S-GTPDIINKSILG-FFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ--IDTR 256
                     +I        +  +  + ++ +               +     +  +   
Sbjct: 158 DRMLDMGFVNAIRNIMMEVNSAPQIMLFSATSSAQMNKLASDILRKPKRISVDRENMTAT 217

Query: 257 TVEGIDSGFHEGIISRYGLD--SDVARIEILGQFPQQEVNN---------------FIPH 299
           T+  +     E   +    +        ++L  F   +                      
Sbjct: 218 TISHVVYPVDEERKTELLSELIGRKNWQQVL-VFVNYKETANNIVKELKLDGIKAVICHG 276

Query: 300 NYIEEAMSREAID--DLYAPLIMGCDIAGEGGD 330
           +  + A  R   +  +  A +++  D+A  G D
Sbjct: 277 DKAQSARRRALEEFKEGKARVMVATDVAARGLD 309


>gi|158293118|ref|XP_314465.4| AGAP010491-PA [Anopheles gambiae str. PEST]
 gi|157016805|gb|EAA09908.4| AGAP010491-PA [Anopheles gambiae str. PEST]
          Length = 1008

 Score = 45.3 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 63/232 (27%), Gaps = 27/232 (11%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q + +                     +++AGRG GK+     + +        +++   +
Sbjct: 254 QAKAVAQFIDALAEKQLKPP-----TSLTAGRGRGKSA-AMGLAIAGSIAFGYVNVYVTS 307

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            S   L   L+  + K   +L ++   +   +      +   ++  ++  +++       
Sbjct: 308 PSPENLIT-LFEFILKGFDVLEYQEHTDYTIIRSTNPNFNKAIIRINITRNNRQTIQYIS 366

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
                  +            +  DEA+  P       L     +       M S      
Sbjct: 367 PTDAHLLNAAD--------LLIIDEAAAIP-------LPMVRAMLGPYLVFMASTING-- 409

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
              Y+     L      Q+   T   +     E I    G   +     +L 
Sbjct: 410 ---YEGTGRSLSLKLLSQLQKETNAPLPIKLEESIRYSPGDPVESWLTSLLC 458


>gi|265986292|ref|ZP_06098849.1| type I restriction modification enzyme [Brucella pinnipedialis
           M292/94/1]
 gi|264658489|gb|EEZ28750.1| type I restriction modification enzyme [Brucella pinnipedialis
           M292/94/1]
          Length = 798

 Score = 45.3 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 81/291 (27%), Gaps = 32/291 (10%)

Query: 11  LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70
            +  L  +L  A  +   +NFV+     G + K L  + Q          AV        
Sbjct: 53  QDILLAGLLAPANLLDLIRNFVVFETIGGRRIKKLARYQQ--------FVAVGKAIERIR 104

Query: 71  NNSNPTIFKCAISAGRGIGKTTLNAWMM--LWLISTRPGMSIICIANSETQLKNTLWAEV 128
              NP      I   +G GK+    ++   L  +      +I+ + +             
Sbjct: 105 TAPNPQRRGGVIHHTQGSGKSLTMVFLATKLRRLPEAENPTIVIVTDRTDLDDQIT---- 160

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR-TYSEERPDTFVGP 187
                       F+    +        + L +++   +    +T    +    P      
Sbjct: 161 ----------GQFQRSGFANPIQAESGDSLRKALSGGAGTTVLTTVHKFHSAVPKRSSVI 210

Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR--RLNGWFYDIFNIPL 245
                + V  DEA         ++        PN   I  + T   + +    + F   L
Sbjct: 211 SKARNVFVMVDEAH---RTQYGALAARMRAGLPNACMIAFTGTPIDKKDRSTREAFGDYL 267

Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
             +       +    +   + E   +R  +D      E+   FP+   +  
Sbjct: 268 HRY-LIDQAVKDGATVPIYY-EMRDARIRIDGRDFEREVRAAFPELSEDEI 316


>gi|256058984|ref|ZP_05449195.1| type I site-specific deoxyribonuclease, HsdR family protein
           [Brucella neotomae 5K33]
 gi|261322928|ref|ZP_05962125.1| type I restriction modification enzyme [Brucella neotomae 5K33]
 gi|261298908|gb|EEY02405.1| type I restriction modification enzyme [Brucella neotomae 5K33]
          Length = 989

 Score = 45.3 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 81/291 (27%), Gaps = 32/291 (10%)

Query: 11  LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70
            +  L  +L  A  +   +NFV+     G + K L  + Q          AV        
Sbjct: 244 QDILLAGLLAPANLLDLIRNFVVFETIGGRRIKKLARYQQ--------FVAVGKAIERIR 295

Query: 71  NNSNPTIFKCAISAGRGIGKTTLNAWMM--LWLISTRPGMSIICIANSETQLKNTLWAEV 128
              NP      I   +G GK+    ++   L  +      +I+ + +             
Sbjct: 296 TAPNPQRRGGVIHHTQGSGKSLTMVFLATKLRRLPEAENPTIVIVTDRTDLDDQIT---- 351

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR-TYSEERPDTFVGP 187
                       F+    +        + L +++   +    +T    +    P      
Sbjct: 352 ----------GQFQRSGFANPIQAESGDSLRKALSGGAGTTVLTTVHKFHSAVPKRSSVI 401

Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR--RLNGWFYDIFNIPL 245
                + V  DEA         ++        PN   I  + T   + +    + F   L
Sbjct: 402 SKARNVFVMVDEAH---RTQYGALAARMRAGLPNACMIAFTGTPIDKKDRSTREAFGDYL 458

Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
             +       +    +   + E   +R  +D      E+   FP+   +  
Sbjct: 459 HRY-LIDQAVKDGATVPIYY-EMRDARIRIDGRDFEREVRAAFPELSEDEI 507


>gi|256029295|ref|ZP_05442909.1| type I restriction-modification enzyme, R subunit [Brucella
           pinnipedialis M292/94/1]
          Length = 807

 Score = 45.3 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 81/291 (27%), Gaps = 32/291 (10%)

Query: 11  LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70
            +  L  +L  A  +   +NFV+     G + K L  + Q          AV        
Sbjct: 62  QDILLAGLLAPANLLDLIRNFVVFETIGGRRIKKLARYQQ--------FVAVGKAIERIR 113

Query: 71  NNSNPTIFKCAISAGRGIGKTTLNAWMM--LWLISTRPGMSIICIANSETQLKNTLWAEV 128
              NP      I   +G GK+    ++   L  +      +I+ + +             
Sbjct: 114 TAPNPQRRGGVIHHTQGSGKSLTMVFLATKLRRLPEAENPTIVIVTDRTDLDDQIT---- 169

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR-TYSEERPDTFVGP 187
                       F+    +        + L +++   +    +T    +    P      
Sbjct: 170 ----------GQFQRSGFANPIQAESGDSLRKALSGGAGTTVLTTVHKFHSAVPKRSSVI 219

Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR--RLNGWFYDIFNIPL 245
                + V  DEA         ++        PN   I  + T   + +    + F   L
Sbjct: 220 SKARNVFVMVDEAH---RTQYGALAARMRAGLPNACMIAFTGTPIDKKDRSTREAFGDYL 276

Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
             +       +    +   + E   +R  +D      E+   FP+   +  
Sbjct: 277 HRY-LIDQAVKDGATVPIYY-EMRDARIRIDGRDFEREVRAAFPELSEDEI 325


>gi|239625761|ref|ZP_04668792.1| type III restriction protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519991|gb|EEQ59857.1| type III restriction protein [Clostridiales bacterium 1_7_47FAA]
          Length = 829

 Score = 45.3 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 57/196 (29%), Gaps = 40/196 (20%)

Query: 43  KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102
              E   +P   Q+E + A+                K  + A  GIGKT L A+  L   
Sbjct: 213 TEGEGGFEPRGAQIEALYALKCSRREGAE-------KGLVYAATGIGKTYLAAFDSL--- 262

Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
                  ++ +A+ E  LK    AE  + +       +F  Q   +              
Sbjct: 263 ---DYEKVLFVAHREEILKQA--AESFRNVRHSDDYGFFTGQDKCI-------------- 303

Query: 163 GIDSKHYTITCRTYSEERPD--TFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELN 219
                   I     S  +P           +   +  DE      D   + +  F     
Sbjct: 304 ----GKAVIFASVSSLGKPAYLNEGYFSRDYFDYIVIDEFHHAVTDQYKRIMEYF----R 355

Query: 220 PNRFWIMTSNTRRLNG 235
           P     +T+   R++G
Sbjct: 356 PKFMLGLTATPDRMDG 371


>gi|148558328|ref|YP_001257781.1| type I restriction-modification enzyme, R subunit [Brucella ovis
           ATCC 25840]
 gi|148369613|gb|ABQ62485.1| type I restriction-modification enzyme, R subunit [Brucella ovis
           ATCC 25840]
          Length = 967

 Score = 45.3 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 81/291 (27%), Gaps = 32/291 (10%)

Query: 11  LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70
            +  L  +L  A  +   +NFV+     G + K L  + Q          AV        
Sbjct: 222 QDILLAGLLAPANLLDLIRNFVVFETIGGRRIKKLARYQQ--------FVAVGKAIERIR 273

Query: 71  NNSNPTIFKCAISAGRGIGKTTLNAWMM--LWLISTRPGMSIICIANSETQLKNTLWAEV 128
              NP      I   +G GK+    ++   L  +      +I+ + +             
Sbjct: 274 TAPNPQRRGGVIHHTQGSGKSLTMVFLATKLRRLPEAENPTIVIVTDRTDLDDQIT---- 329

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR-TYSEERPDTFVGP 187
                       F+    +        + L +++   +    +T    +    P      
Sbjct: 330 ----------GQFQRSGFANPIQAESGDSLRKALSGGAGTTVLTTVHKFHSAVPKRSSVI 379

Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR--RLNGWFYDIFNIPL 245
                + V  DEA         ++        PN   I  + T   + +    + F   L
Sbjct: 380 SKARNVFVMVDEAH---RTQYGALAARMRAGLPNACMIAFTGTPIDKKDRSTREAFGDYL 436

Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
             +       +    +   + E   +R  +D      E+   FP+   +  
Sbjct: 437 HRY-LIDQAVKDGATVPIYY-EMRDARIRIDGRDFEREVRAAFPELSEDEI 485


>gi|78127862|gb|ABB22246.1| DNA packaging protein-like protein [Ovine herpesvirus 2]
          Length = 687

 Score = 45.3 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 54/180 (30%), Gaps = 18/180 (10%)

Query: 45  LEHFSQPHRWQL--EFMEAVDVHCHSNVNNSNPTIFKCAI-SAGRGIGKTTLNAWMMLWL 101
           L     P   +   +  +      + + +       K ++    R  GKT +   ++  L
Sbjct: 178 LVSIKAPELCERFFKIFKLYFDVDNMDSHTLEVFKQKASVFLIPRRHGKTWIVVAIISIL 237

Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
           +++   + I  +A+ +          ++   +  P R+                ++ +++
Sbjct: 238 LASVQDLRIGYVAHQKHVANAVFTEVINTLHAFFPGRY---------------IDVKKEN 282

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221
             I          T                   +F DEA+        +ILGF  + +  
Sbjct: 283 GTIIFGPPNKKPSTLMCATCFNKNSIRGQTFQFLFVDEANFIKKDALPTILGFMLQKDAK 342


>gi|83642865|ref|YP_438152.1| ORF29 [Ovine herpesvirus 2]
 gi|61970979|gb|AAX58064.1| ORF29 [Ovine herpesvirus 2]
          Length = 687

 Score = 45.3 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 54/180 (30%), Gaps = 18/180 (10%)

Query: 45  LEHFSQPHRWQL--EFMEAVDVHCHSNVNNSNPTIFKCAI-SAGRGIGKTTLNAWMMLWL 101
           L     P   +   +  +      + + +       K ++    R  GKT +   ++  L
Sbjct: 178 LVSIKAPELCERFFKIFKLYFDVDNMDSHTLEVFKQKASVFLIPRRHGKTWIVVAIISIL 237

Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
           +++   + I  +A+ +          ++   +  P R+                ++ +++
Sbjct: 238 LASVQDLRIGYVAHQKHVANAVFTEVINTLHAFFPGRY---------------IDVKKEN 282

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221
             I          T                   +F DEA+        +ILGF  + +  
Sbjct: 283 GTIIFGPPNKKPSTLMCATCFNKNSIRGQTFQFLFVDEANFIKKDALPTILGFMLQKDAK 342


>gi|23500572|ref|NP_700012.1| type I restriction-modification enzyme, R subunit [Brucella suis
           1330]
 gi|23464209|gb|AAN34017.1| type I restriction-modification enzyme, R subunit [Brucella suis
           1330]
          Length = 967

 Score = 45.3 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 81/291 (27%), Gaps = 32/291 (10%)

Query: 11  LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70
            +  L  +L  A  +   +NFV+     G + K L  + Q          AV        
Sbjct: 222 QDILLAGLLAPANLLDLIRNFVVFETIGGRRIKKLARYQQ--------FVAVGKAIERIR 273

Query: 71  NNSNPTIFKCAISAGRGIGKTTLNAWMM--LWLISTRPGMSIICIANSETQLKNTLWAEV 128
              NP      I   +G GK+    ++   L  +      +I+ + +             
Sbjct: 274 TAPNPQRRGGVIHHTQGSGKSLTMVFLATKLRRLPEAENPTIVIVTDRTDLDDQIT---- 329

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR-TYSEERPDTFVGP 187
                       F+    +        + L +++   +    +T    +    P      
Sbjct: 330 ----------GQFQRSGFANPIQAESGDSLRKALSGGAGTTVLTTVHKFHSAVPKRSSVI 379

Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR--RLNGWFYDIFNIPL 245
                + V  DEA         ++        PN   I  + T   + +    + F   L
Sbjct: 380 SKARNVFVMVDEAH---RTQYGALAARMRAGLPNACMIAFTGTPIDKKDRSTREAFGDYL 436

Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
             +       +    +   + E   +R  +D      E+   FP+   +  
Sbjct: 437 HRY-LIDQAVKDGATVPIYY-EMRDARIRIDGRDFEREVRAAFPELSEDEI 485


>gi|83269307|ref|YP_418598.1| DEAD/DEAH box helicase [Brucella melitensis biovar Abortus 2308]
 gi|82939581|emb|CAJ12561.1| DEAD/DEAH box helicase:Helicase, C-terminal:Type I site-specific
           deoxyribonuclease HsdR [Brucella melitensis biovar
           Abortus 2308]
          Length = 967

 Score = 45.3 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 81/291 (27%), Gaps = 32/291 (10%)

Query: 11  LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70
            +  L  +L  A  +   +NFV+     G + K L  + Q          AV        
Sbjct: 222 QDILLAGLLAPANLLDLIRNFVVFETIGGRRIKKLARYQQ--------FVAVGKAIERIR 273

Query: 71  NNSNPTIFKCAISAGRGIGKTTLNAWMM--LWLISTRPGMSIICIANSETQLKNTLWAEV 128
              NP      I   +G GK+    ++   L  +      +I+ + +             
Sbjct: 274 TAPNPQRRGGVIHHTQGSGKSLTMVFLATKLRRLPEAENPTIVIVTDRTDLDDQIT---- 329

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR-TYSEERPDTFVGP 187
                       F+    +        + L +++   +    +T    +    P      
Sbjct: 330 ----------GQFQRSGFANPIQAESGDSLRKALSGGAGTTVLTTVHKFHSAVPKRSSVI 379

Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR--RLNGWFYDIFNIPL 245
                + V  DEA         ++        PN   I  + T   + +    + F   L
Sbjct: 380 SKARNVFVMVDEAH---RTQYGALAARMRAGLPNACMIAFTGTPIDKKDRSTREAFGDYL 436

Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
             +       +    +   + E   +R  +D      E+   FP+   +  
Sbjct: 437 HRY-LIDQAVKDGATVPIYY-EMRDARIRIDGRDFEREVRAAFPELSEDEI 485


>gi|118580295|ref|YP_901545.1| helicase domain-containing protein [Pelobacter propionicus DSM
           2379]
 gi|118503005|gb|ABK99487.1| helicase domain protein [Pelobacter propionicus DSM 2379]
          Length = 1172

 Score = 45.3 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 57/213 (26%), Gaps = 20/213 (9%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKT +    +  L+       ++ IA           + V +W   L  +        
Sbjct: 132 GAGKTVMAGLYIRELMMRADAQRVLIIAP---------GSLVEQWQDELYEKFGLTFT-- 180

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV-GPHNTHGMAVFNDEASGTPD 205
            +       +    +   ++       R     R +       + +   V  DEA     
Sbjct: 181 -IFSRELEQQSRTGNAFYENDTLI--ARLDQLSRSEDLQEKLTSVNWDLVIFDEAHKLSA 237

Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265
                               + S TR L        N   ED++ + +     +     F
Sbjct: 238 TWYG--QKVTETKRFKLAKFLGSTTRHLLLMTATPHNGKEEDFQLF-LSLLDSDRFYGKF 294

Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIP 298
            +G        SD+ R  +  +  + +     P
Sbjct: 295 RDGAHKV--DTSDLMRRMVKEELLKFDGTKLFP 325


>gi|238502669|ref|XP_002382568.1| DEAD/DEAH box helicase, putative [Aspergillus flavus NRRL3357]
 gi|220691378|gb|EED47726.1| DEAD/DEAH box helicase, putative [Aspergillus flavus NRRL3357]
          Length = 1997

 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/123 (11%), Positives = 32/123 (26%), Gaps = 10/123 (8%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               + +  G GKT      M W    +PG  ++ IA  +  ++  +     +    +  +
Sbjct: 1158 NVLLGSPTGSGKTVAAELAMWWAFREKPGSKVVYIAPMKALVRERVHDWKKRLTGPMGLK 1217

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               E+   +   +    +        +            +                V  D
Sbjct: 1218 -LVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRDYV---------RKVSLVIID 1267

Query: 199  EAS 201
            E  
Sbjct: 1268 EIH 1270


>gi|169775993|ref|XP_001822463.1| helicase mug81 [Aspergillus oryzae RIB40]
 gi|83771198|dbj|BAE61330.1| unnamed protein product [Aspergillus oryzae]
          Length = 1998

 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/123 (11%), Positives = 32/123 (26%), Gaps = 10/123 (8%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               + +  G GKT      M W    +PG  ++ IA  +  ++  +     +    +  +
Sbjct: 1158 NVLLGSPTGSGKTVAAELAMWWAFREKPGSKVVYIAPMKALVRERVHDWKKRLTGPMGLK 1217

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               E+   +   +    +        +            +                V  D
Sbjct: 1218 -LVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRDYV---------RKVSLVIID 1267

Query: 199  EAS 201
            E  
Sbjct: 1268 EIH 1270


>gi|295092678|emb|CBK78785.1| Predicted ATPase related to phosphate starvation-inducible protein
           PhoH [Clostridium cf. saccharolyticum K10]
          Length = 458

 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 43/178 (24%), Gaps = 7/178 (3%)

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GMSIICIANSETQLK 121
                +           +    G  KT     + L  +   P      I+    +  Q  
Sbjct: 242 FLQEALMQPAEKAPLVIVKGMAGTSKTFYALAVGLEKLLNHPTGEYRRILICRPN-AQFD 300

Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
           + +          +       M +L            E    +  K   I  R   +   
Sbjct: 301 DDIGFLPGDEKEKISPLLRPIMDNLEQLIDSDEESRYEDERELQGKIDEIFERGLIQAEA 360

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
             F+   +     +  DEA            G  T    +   I+  +  +++  F D
Sbjct: 361 LNFIRGRSIVKTYLIIDEAQNMTPRQ---AKGIITRAGKDTKVILLGDPNQIDRPFLD 415


>gi|229490046|ref|ZP_04383899.1| helicase conserved domain protein [Rhodococcus erythropolis SK121]
 gi|229323147|gb|EEN88915.1| helicase conserved domain protein [Rhodococcus erythropolis SK121]
          Length = 429

 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 26/202 (12%)

Query: 44  PLEHFSQPH------RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97
             E    P       ++Q E          +      PT  +  +S   G GKT + A  
Sbjct: 11  EREEAEGPTDFPSLHKYQEEIAGRFVEFLQN------PTPQRAMLSLPTGAGKTRVAAEG 64

Query: 98  MLWLISTRPGMS--IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
           ++  I         I+ IA +    +  + +    W  + P       +   +    W  
Sbjct: 65  VIRWIHDSDAPIGPILWIAQTGELCEQAVQSWKFVWERVGP-------KQTLVIDRLWST 117

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI---L 212
                  G          +  S    D +          V  DEA          I   L
Sbjct: 118 NSATPVTGRAHLVVATDAKLRSCLDTDDYEWLR--DASLVIVDEAHVASSPQYTRILDHL 175

Query: 213 GFFTELNPNRFWIMTSNTRRLN 234
           G     N      +T+   R +
Sbjct: 176 GLTRYKNSRPLVGLTATPFRND 197


>gi|291087955|ref|ZP_06572180.1| PhoH family protein [Clostridium sp. M62/1]
 gi|291073520|gb|EFE10884.1| PhoH family protein [Clostridium sp. M62/1]
          Length = 277

 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 43/178 (24%), Gaps = 7/178 (3%)

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GMSIICIANSETQLK 121
                +           +    G  KT     + L  +   P      I+    +  Q  
Sbjct: 61  FLQEALMQPAEKAPLVIVKGMAGTSKTFYALAVGLEKLLNHPTGEYRRILICRPN-AQFD 119

Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
           + +          +       M +L            E    +  K   I  R   +   
Sbjct: 120 DDIGFLPGDEKEKISPLLRPIMDNLEQLIDSDEESRYEDERELQGKIDEIFERGLIQAEA 179

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
             F+   +     +  DEA            G  T    +   I+  +  +++  F D
Sbjct: 180 LNFIRGRSIVKTYLIIDEAQNMTPRQ---AKGIITRAGKDTKVILLGDPNQIDRPFLD 234


>gi|148272867|ref|YP_001222428.1| putative helicase [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
 gi|147830797|emb|CAN01738.1| putative helicase [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
          Length = 823

 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 50/220 (22%), Gaps = 21/220 (9%)

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           +             S        ++A  G GKT + A   ++L   RP   I   A    
Sbjct: 30  LRFDLDPFQRAAAESLENGRSVLVAAPTGAGKT-IVAEFAVYLAMQRPSAKIFYTAP-MK 87

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
            L N  +AE+             E     +        +  +     ++   +T      
Sbjct: 88  ALSNQKYAELV-----------AEYGPDEVGLLTGDTNVNSR-----ARIVVMTTEVLRN 131

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF-WIMTSNTRRLNGWF 237
                           V  DE     D    ++        P     I  S T      F
Sbjct: 132 MLYADSDLLR--DLAFVIMDEVHYLADRFRGAVWEEVIIHLPQSVRMISLSATVSNAEEF 189

Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277
            D       +      + R V           +      S
Sbjct: 190 GDWLQAVRGETDVIVSEERPVPLEQHVIVRHRMVDLFDSS 229


>gi|148747835|ref|YP_001285801.1| terminase [Phormidium phage Pf-WMP3]
 gi|146230068|gb|ABQ12476.1| terminase [Phormidium phage Pf-WMP3]
          Length = 565

 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 42/139 (30%), Gaps = 23/139 (16%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           M R   T ++    L ++                   W      L  F    +    F  
Sbjct: 1   MARRTPTHKERVDALFDI-------------------WAFAD--LIGFRGGRKSFGAFHY 39

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW-MMLWLISTRPGMSIICIANSETQ 119
            +         + +    +  + A RG  K+T+ +   +LW I   P + ++   N   +
Sbjct: 40  ELTDFLTQTQQHEDKDNRRRLVLAPRGHLKSTVCSVLYVLWRIYRNPDIRVLVGTN-LKR 98

Query: 120 LKNTLWAEVSKWLSMLPHR 138
           L      E+ ++      +
Sbjct: 99  LSRAFIRELRQYFEDTWLQ 117


>gi|300916344|ref|ZP_07133089.1| hypothetical protein HMPREF9540_00241 [Escherichia coli MS 115-1]
 gi|300416353|gb|EFJ99663.1| hypothetical protein HMPREF9540_00241 [Escherichia coli MS 115-1]
          Length = 334

 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 64/250 (25%), Gaps = 25/250 (10%)

Query: 45  LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
           L+    P+  Q      +       ++       K        IGKTT+   ++ +  +T
Sbjct: 34  LKFPDGPYTGQP---MKLFEFQKGMIDVIKERKKKIVFETSAQIGKTTILNGILFYKSAT 90

Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
            PG            +  +   E ++WLS    +    +            +    ++  
Sbjct: 91  DPGN---------AGVLQSTGKETTQWLSG---KIRPMIDESEEMQRIVTDKNDRNAVNN 138

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK-----SILGFFTELN 219
            S+        +     ++           +  DE         +           T   
Sbjct: 139 TSQIQLRAGGFWYFMSLNSPSHLRGKTLPLMLLDEVDAVETDTEEGNPIIIAEQRATTFG 198

Query: 220 PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT----RTVEGIDSGFHEGIISRYG- 274
            +    ++S      G  +  +    +        T      +   +  F    I     
Sbjct: 199 EDARVFISSTPTSKYGAIHTQYEASDKRKYHVPCPTCGHKHELTWENIKFDWVKIDGKSL 258

Query: 275 LDSDVARIEI 284
            D + ARIE 
Sbjct: 259 PDPNSARIEC 268


>gi|260867258|ref|YP_003233660.1| putative terminase large subunit [Escherichia coli O111:H- str.
           11128]
 gi|257763614|dbj|BAI35109.1| putative terminase large subunit [Escherichia coli O111:H- str.
           11128]
          Length = 568

 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 29/290 (10%), Positives = 64/290 (22%), Gaps = 40/290 (13%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEA 61
           PR     +  E E    +M    + +    +   +    +   L  F      Q +   +
Sbjct: 8   PRCDEPSEMTEAEQRLFIMTK--LSNPWWRLNHLYKIQNEKGELVTFRM-RPAQRQLFRS 64

Query: 62  VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121
           +                K  I   R +G +T     +L      P +    +A  +    
Sbjct: 65  MHN--------------KNIILKARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQAAS 110

Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
                +++     LP         +               +            ++     
Sbjct: 111 EIFRTKIAVPFDHLPDWLRASFTIVERRSGASG-----GYILFGHGSSIQVATSFRSGTV 165

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
                  +           +  P    +   G    ++        S    + G FY++ 
Sbjct: 166 QRLHISEHGKI-------CAKYPAKAKELRTGTLNAVSDECIIFDESTAEGVGGDFYEMS 218

Query: 242 NIPLE-----------DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280
           N   E           D+K +           +   E  +          
Sbjct: 219 NCAQESTASGLLLTAQDYKFHFYAWWQDPKYSARVPESGLKLSREKMTYF 268


>gi|219852121|ref|YP_002466553.1| AAA ATPase [Methanosphaerula palustris E1-9c]
 gi|219546380|gb|ACL16830.1| AAA ATPase [Methanosphaerula palustris E1-9c]
          Length = 1271

 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 44/329 (13%), Positives = 79/329 (24%), Gaps = 39/329 (11%)

Query: 22   AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFK-- 79
            +EC L   + +           PL               A   H  S+   +   I K  
Sbjct: 754  SECDLDDTDLIRLIEEPLTVATPLAEDPGFVEAARG--YANSHHLTSSQRAAFDQILKNR 811

Query: 80   -CAISAGRGIGKTTLNAWMMLWLIS----TRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
               +    G GKTT  A  +L L+      R G+ I+  A + + ++N L    S+   +
Sbjct: 812  LTLVWGPPGTGKTTFLAAAILSLVQARQEQRRGIRILVTAFTHSAVENLLSKVQSQVHDL 871

Query: 135  LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF--VGPHNTHG 192
               +    ++                +  I +  ++                   +    
Sbjct: 872  PVGKGVRVVKIDRDETYRRNGPASTTNDAIKAGLFSDDPSLVLGGTVYGIYKASKYLAPF 931

Query: 193  MAVFNDEASGTPDIINKSILGFFTELNPNRFW--------IMTSNTRRLNGWFYDIFNIP 244
              +  DEAS          L          F         I+             +    
Sbjct: 932  DLLIVDEASQLRFGELSLALAALRPGGRLVFAGDDQQLPPIIKGEYPEPEDGLPGLHESI 991

Query: 245  LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE--VNNFIPHNYI 302
               + R + D        +   E                 L +FP      + ++P   +
Sbjct: 992  F-RYLRLRDDH-DQPRYTAELLENWRMNST----------LSRFPAAALYGDGYVPATPV 1039

Query: 303  EEAMSREAIDDL------YAPLIMGCDIA 325
                               A L    D A
Sbjct: 1040 LAEQRLSLKPAGRPGSSLDAMLAWILDPA 1068


>gi|291335742|gb|ADD95345.1| DNA packaging protein A [uncultured phage MedDCM-OCT-S05-C243]
          Length = 371

 Score = 44.9 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/169 (11%), Positives = 37/169 (21%), Gaps = 39/169 (23%)

Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278
                W      R    +   I     ED           +   +             S+
Sbjct: 1   YRPFVWTARY-PRNNTPYEGLIAPQLQEDIDNGVTPWTPTDDRFTEDDLVEREASMGRSN 59

Query: 279 VARIE--------------------ILGQFPQQEVNNFI-----------------PHNY 301
                                    I    P +  +N +                 P +Y
Sbjct: 60  FMLQFMLDTSLSDAEKFPLKMADLVITSVNPTEAPDNVVWCSDPRNVLKDLPTVGLPGDY 119

Query: 302 IEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFR-RGNIIEHIFDWS 349
               M+ +     Y   I   D +G G D+T   +  + N   ++ +  
Sbjct: 120 FYSPMALQGEWTKYQETICSVDPSGRGADETAACYISQKNGFLYVHEMR 168


>gi|237667744|ref|ZP_04527728.1| putative phage terminase, large subunit [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|237656092|gb|EEP53648.1| putative phage terminase, large subunit [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 560

 Score = 44.9 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 39/361 (10%), Positives = 99/361 (27%), Gaps = 25/361 (6%)

Query: 4   LISTDQKLEQELHEMLMHAE---CVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           LI  ++K  +E  +     E    + +          +    + L++      +Q   + 
Sbjct: 33  LIDYEKKQYEEQFDFYFDEEKLQIINNLLKLFNFATGFVAGEQVLKNLVG---FQCFLIA 89

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA-WMMLWLISTRPGMSIICIANSETQ 119
            +    + +  N           A R   KT +     +L +++ +       I  ++  
Sbjct: 90  NIFGWRYKDNKNKFRYNDITLYIA-RKNAKTAVVGLIFLLLMLTEQDYSEFYSICLTKEL 148

Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
                 + V    +       F+     + P                     + R  +  
Sbjct: 149 AAEIRKSMVQILEASPLIAKHFKWSKTLIGPIECKITKSFFQPRTAESGKNNSIRPSAFV 208

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIIN-----KSILGFFTELNPNRFWIMTSNTRRLN 234
             +      N++  A+ + + +    ++       +I       +      +   T +  
Sbjct: 209 SDEHANFKDNSNFTAMKSGQKNVINPLVFRTTTAYAIDNSIMTPDIETIRKVFDGTFKNE 268

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS------DVARIEILGQF 288
             F  ++    E         +         +  I              +    + +  F
Sbjct: 269 RQFALLYYADEEHLWDDIGIYQANPLRIEENYNTIREDREKALIQDNLVEEYLTKSMNYF 328

Query: 289 -PQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFR----RGNIIE 343
            P+    +++    I+   + E I+     + +G D+A    D T +        GNII 
Sbjct: 329 MPENSGESYVTEEQIKACEADEDINWEGREVYVGVDLAET-DDNTAISMVSLDDDGNIIT 387

Query: 344 H 344
            
Sbjct: 388 K 388


>gi|290559606|gb|EFD92934.1| DEAD/DEAH box helicase domain protein [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 508

 Score = 44.9 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/175 (10%), Positives = 53/175 (30%), Gaps = 16/175 (9%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
           F + +D   +              +    G+GKT ++A +  + +   P   ++ +A ++
Sbjct: 4   FTKKIDDREYQKNIFETCKSGNTLVVLPTGLGKTIISAMLADYRLEKYPNSKVLFLAPTK 63

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
                     +++ +        F         +   +   ++   +  ++  I     +
Sbjct: 64  --------PLINQHMK------TFSNIMDIKIGTASGSVSSKKRSEMYLENQLIFATPQT 109

Query: 178 EERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNP-NRFWIMTSNT 230
            E          +    +  DEA     +     I   +T  +       +T++ 
Sbjct: 110 IENDIKNEVIDFSSFSLLIVDEAHHTVGNYSYVKIAKDYTTGSAHPLILGLTASP 164


>gi|156543626|ref|XP_001604556.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
          Length = 990

 Score = 44.9 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/171 (11%), Positives = 47/171 (27%), Gaps = 11/171 (6%)

Query: 66  CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-SIICIANSETQLKNTL 124
                       F   + A  G GKT +   + L +I  +     +I +A +        
Sbjct: 50  IQHKSIPLGRCGFDLIVRAKSGTGKTAVFGIIALEMIDIKISSVQVIILAPT-------- 101

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
             E++  +  +      E++ L +        +      + +  +         +     
Sbjct: 102 -REIAIQIKEVIASLGCEIKGLKVESFIGGVAMDIDRKKLSN-CHIAIGAPGRVKHLIDK 159

Query: 185 VGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
                 H      DEA    +   +  + +     P    +++S+      
Sbjct: 160 GYLKMDHVRLFVLDEADKLMEESFQKDINYIYAKLPPNRQVISSSATYPGD 210


>gi|148982431|ref|ZP_01816753.1| ATP-dependent RNA helicase SrmB [Vibrionales bacterium SWAT-3]
 gi|145960483|gb|EDK25855.1| ATP-dependent RNA helicase SrmB [Vibrionales bacterium SWAT-3]
          Length = 421

 Score = 44.9 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 45/318 (14%), Positives = 81/318 (25%), Gaps = 50/318 (15%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           K      + +P + Q E +                       SA  G GKT       L 
Sbjct: 16  KAIDEMGYERPTQIQAEAIPQALDG------------RDVLASAPTGTGKTASFVLPALQ 63

Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
            +   P        ++ +  +                     R   +  +L++       
Sbjct: 64  YLQDFPRKKAGPARMLILTPTRELAMQIT----------DQARELAKYTALNIFTITGGV 113

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
              E +  + +    +                       +  DEA    D+    ++   
Sbjct: 114 MYQEHADILGTTQDIVVATPGRLMEYIEAERFDCRAIEWLILDEADRMLDMGFGPVVDRL 173

Query: 216 TELNPNRFWIMTSNTR----RLNGWFYDIFNIP---------LEDWKRYQIDTR-TVEGI 261
           +     R   +  +       + G+  D+ N P          E  K  Q   R      
Sbjct: 174 SAECRWRKQTLLFSATLEGKGVEGFTEDLLNNPAEIDAKSSLRERKKITQWYHRADTAEH 233

Query: 262 DSGFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AID 312
                + II++    S V     E LG       +  IP  +I  E    R         
Sbjct: 234 KLDLLKHIITKEAERSIVFLKTRERLGDLRALLESAQIPCAWIQGEMPQDRRNNAIARFR 293

Query: 313 DLYAPLIMGCDIAGEGGD 330
           D    +++  D+A  G D
Sbjct: 294 DGTVNVLLATDVAARGID 311


>gi|260771156|ref|ZP_05880083.1| ATP-dependent RNA helicase SrmB [Vibrio furnissii CIP 102972]
 gi|260613753|gb|EEX38945.1| ATP-dependent RNA helicase SrmB [Vibrio furnissii CIP 102972]
 gi|315179238|gb|ADT86152.1| ATP-dependent RNA helicase SrmB [Vibrio furnissii NCTC 11218]
          Length = 414

 Score = 44.9 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 43/318 (13%), Positives = 81/318 (25%), Gaps = 50/318 (15%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           +      F +P + Q E +                       SA  G GKT       L 
Sbjct: 16  EAIEEMGFERPTQVQAEAI------------PHALDGRDVLASAPTGTGKTAAFVIPALQ 63

Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
            +   P        I+ +  +          E ++ L+     + F +     +      
Sbjct: 64  FLQDFPRKKAGPARILILTPTRELAMQIT--EQARELAKYTKLNIFTITGGVQYQEHADI 121

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
               Q +        +                       +  DEA    D+    ++   
Sbjct: 122 LATTQDI--------VVATPGRLLEYIEAERFDCRAIEWLILDEADRMLDMGFGPVVDRL 173

Query: 216 TELNPNRFWIMTSNTR----RLNGWFYDIFNIP---------LEDWKRYQIDTR-TVEGI 261
           +     R   M  +       + G+  D+   P          E  K  Q   R      
Sbjct: 174 SAECRWRKQTMLFSATLEGRGVEGFTADLLKEPAEVNAEPPRRERKKISQWYHRADDMNH 233

Query: 262 DSGFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AID 312
                + I+++    + V     E L +      +  I  ++I  E    R         
Sbjct: 234 KLELLKAILTQQSERAIVFFKTRERLAEVRAVLESAQIACSWIQGEMPQDRRNNAISRFR 293

Query: 313 DLYAPLIMGCDIAGEGGD 330
           D    +++  D+A  G D
Sbjct: 294 DGSVNILLATDVAARGID 311


>gi|195570614|ref|XP_002103302.1| GD19029 [Drosophila simulans]
 gi|194199229|gb|EDX12805.1| GD19029 [Drosophila simulans]
          Length = 2182

 Score = 44.9 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/175 (11%), Positives = 42/175 (24%), Gaps = 20/175 (11%)

Query: 45   LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            L  F+  +  Q +    +    +              + A  G GKT +    +   ++ 
Sbjct: 1330 LYKFTHFNPIQTQIFHCLYHTDN-----------NVLLGAPTGSGKTIVAEIAIFRALNQ 1378

Query: 105  RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
             P   ++ IA  +  +K  +     ++          E+            E        
Sbjct: 1379 NPKCKVVYIAPLKALVKERIADWEQRFQRSSLGLKVVELTGDVTPDIQAIRESQLIVTTP 1438

Query: 165  DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
            +            E            H   +  DE     +     I    +  N
Sbjct: 1439 EKWDGISRSWQTREYV---------QHVSLIVIDEIHLLGEDRGPVIEVIVSRTN 1484


>gi|195328689|ref|XP_002031047.1| GM24241 [Drosophila sechellia]
 gi|194119990|gb|EDW42033.1| GM24241 [Drosophila sechellia]
          Length = 2181

 Score = 44.9 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/175 (11%), Positives = 42/175 (24%), Gaps = 20/175 (11%)

Query: 45   LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            L  F+  +  Q +    +    +              + A  G GKT +    +   ++ 
Sbjct: 1329 LYKFTHFNPIQTQIFHCLYHTDN-----------NVLLGAPTGSGKTIVAEIAIFRALNQ 1377

Query: 105  RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
             P   ++ IA  +  +K  +     ++          E+            E        
Sbjct: 1378 NPKCKVVYIAPLKALVKERIADWEQRFQRSSLGLKVVELTGDVTPDIQAIRESQLIVTTP 1437

Query: 165  DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
            +            E            H   +  DE     +     I    +  N
Sbjct: 1438 EKWDGISRSWQTREYV---------QHVSLIVIDEIHLLGEDRGPVIEVIVSRTN 1483


>gi|15291373|gb|AAK92955.1| GH18520p [Drosophila melanogaster]
          Length = 774

 Score = 44.9 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/175 (11%), Positives = 42/175 (24%), Gaps = 20/175 (11%)

Query: 45  LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
           L  F+  +  Q +    +    +              + A  G GKT +    +   ++ 
Sbjct: 243 LYKFTHFNPIQTQIFHCLYHTDN-----------NVLLGAPTGSGKTIVAEIAIFRALNQ 291

Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
            P   ++ IA  +  +K  +     ++          E+            E        
Sbjct: 292 NPKCKVVYIAPLKALVKERIADWEQRFQRSSLGLKVVELTGDVTPDIQAIRESQLIVTTP 351

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
           +            E            H   +  DE     +     I    +  N
Sbjct: 352 EKWDGISRSWQTREYV---------QHVSLIVIDEIHLLGEDRGPVIEVIVSRTN 397


>gi|24647182|ref|NP_650472.2| CG5205 [Drosophila melanogaster]
 gi|23171378|gb|AAF55204.2| CG5205 [Drosophila melanogaster]
          Length = 2183

 Score = 44.9 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/175 (11%), Positives = 42/175 (24%), Gaps = 20/175 (11%)

Query: 45   LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            L  F+  +  Q +    +    +              + A  G GKT +    +   ++ 
Sbjct: 1331 LYKFTHFNPIQTQIFHCLYHTDN-----------NVLLGAPTGSGKTIVAEIAIFRALNQ 1379

Query: 105  RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
             P   ++ IA  +  +K  +     ++          E+            E        
Sbjct: 1380 NPKCKVVYIAPLKALVKERIADWEQRFQRSSLGLKVVELTGDVTPDIQAIRESQLIVTTP 1439

Query: 165  DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
            +            E            H   +  DE     +     I    +  N
Sbjct: 1440 EKWDGISRSWQTREYV---------QHVSLIVIDEIHLLGEDRGPVIEVIVSRTN 1485


>gi|296126191|ref|YP_003633443.1| phage terminase, large subunit, PBSX family [Brachyspira murdochii
           DSM 12563]
 gi|296018007|gb|ADG71244.1| phage terminase, large subunit, PBSX family [Brachyspira murdochii
           DSM 12563]
          Length = 456

 Score = 44.9 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 50/181 (27%), Gaps = 20/181 (11%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAIS-AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
            +  +          T  +  I+  GRG GK+   A +++       G  I+C    +  
Sbjct: 2   EIKFNILKPFEKWVNTDKRLKIAFGGRGGGKSESIARILIAKSFEIKG-VILCSREIQKS 60

Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
           +  + +  +   +  L    +F ++                 +     +         E 
Sbjct: 61  IAYSTYPLLVSIIKELKLESFFNIK--------------RNEITNKITNSKFIFLGIREC 106

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
             +     +  +    F +E         + +      L     WI   N R    + Y 
Sbjct: 107 SIEEIKSIY--NVRICFIEEGQTLTQRSYEILEPSIRALKSE-IWIAF-NPRFETDFIYK 162

Query: 240 I 240
           +
Sbjct: 163 M 163


>gi|67524049|ref|XP_660086.1| hypothetical protein AN2482.2 [Aspergillus nidulans FGSC A4]
 gi|40744644|gb|EAA63800.1| hypothetical protein AN2482.2 [Aspergillus nidulans FGSC A4]
 gi|259487904|tpe|CBF86944.1| TPA: DEAD/DEAH box helicase, putative (AFU_orthologue; AFUA_4G03070)
            [Aspergillus nidulans FGSC A4]
          Length = 2015

 Score = 44.9 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/123 (12%), Positives = 33/123 (26%), Gaps = 10/123 (8%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               + +  G GKT      M W    RPG  ++ IA  +  ++  +     +  + +  +
Sbjct: 1150 NVLLGSPTGSGKTVAAELAMWWAFRERPGSKVVYIAPMKALVRERVMDWGRRLTAPMGLK 1209

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               E+   +   +    +        +            +                V  D
Sbjct: 1210 -LVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRDYV---------RKVSLVIID 1259

Query: 199  EAS 201
            E  
Sbjct: 1260 EIH 1262


>gi|108762724|ref|YP_635377.1| CRISPR-associated helicase Cas3 [Myxococcus xanthus DK 1622]
 gi|108466604|gb|ABF91789.1| CRISPR-associated helicase Cas3 [Myxococcus xanthus DK 1622]
          Length = 746

 Score = 44.9 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 55/236 (23%), Gaps = 30/236 (12%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P  +Q E   +                    + AG G GKT   A   LW     PG  +
Sbjct: 270 PRPFQEEVARSAAPL--------------TLVRAGCGSGKT---AAAYLWAARQHPGRPL 312

Query: 111 ICIANSETQLKNTL-----WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI- 164
                +              A+V   L        F++  L    +   +   +  +   
Sbjct: 313 WLTYPTMGTATEGFRDYLHGADVEARLQHSRAEVDFDIFGLRDGAAPGTSSRDQDRLDAL 372

Query: 165 ---DSKHYTITCRTYSEERPDTFVGPHNTHGM---AVFNDEASGTPDIINKSILGFF-TE 217
               +   + T  T          G +   G+    V  DE     D +   +L F    
Sbjct: 373 RSWGADAMSCTADTVLGLVQSQRQGLYAWPGLCAACVVFDEVHAYDDRLFGCLLRFLEAL 432

Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRY 273
                  +  S           +                 +E +       +   +
Sbjct: 433 PGIPALLMTASLPATRLDVLRGMCERVHGRSLAEVEGPEDLETLPRYQRLDVAEPW 488


>gi|296083594|emb|CBI23583.3| unnamed protein product [Vitis vinifera]
          Length = 1287

 Score = 44.9 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 50/169 (29%), Gaps = 12/169 (7%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G+GKT +   ++L     R     + +            A +S+W   L      E  S+
Sbjct: 634 GLGKTVMTIALILARPGRRSSGGTLIVCP---------MALLSQWKDELETHSKPESISI 684

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
            +H  G      +     D    T    T + +  +     H      V  DEA      
Sbjct: 685 FIHYGGDRTNDPKVISEHDVVLTTYGVLTSAYKNDENSSIFHRVEWYRVVLDEAHTIKSS 744

Query: 207 INKSILGFFTELNPNRFWIMTSNT--RRLNGWFYDIFNIPLEDWKRYQI 253
              S    F     +  W +T       L   +  +  + +E W  +  
Sbjct: 745 KTLSAQAAFALP-SHCRWCLTGTPLQNNLEDLYSLLCFLHVEPWCNWAW 792


>gi|161620899|ref|YP_001594785.1| HsdR family type I site-specific deoxyribonuclease [Brucella canis
           ATCC 23365]
 gi|254703173|ref|ZP_05165001.1| HsdR family type I site-specific deoxyribonuclease [Brucella suis
           bv. 3 str. 686]
 gi|260567899|ref|ZP_05838368.1| HsdR protein [Brucella suis bv. 4 str. 40]
 gi|261753795|ref|ZP_05997504.1| type I restriction modification enzyme [Brucella suis bv. 3 str.
           686]
 gi|161337710|gb|ABX64014.1| type I site-specific deoxyribonuclease, HsdR family [Brucella canis
           ATCC 23365]
 gi|260154564|gb|EEW89645.1| HsdR protein [Brucella suis bv. 4 str. 40]
 gi|261743548|gb|EEY31474.1| type I restriction modification enzyme [Brucella suis bv. 3 str.
           686]
          Length = 989

 Score = 44.9 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 81/291 (27%), Gaps = 32/291 (10%)

Query: 11  LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70
            +  L  +L  A  +   +NFV+     G + K L  + Q          AV        
Sbjct: 244 QDILLAGLLAPANLLDLIRNFVVFETIGGRRIKKLARYQQ--------FVAVGKAIERIR 295

Query: 71  NNSNPTIFKCAISAGRGIGKTTLNAWMM--LWLISTRPGMSIICIANSETQLKNTLWAEV 128
              NP      I   +G GK+    ++   L  +      +I+ + +             
Sbjct: 296 TAPNPQRRGGVIHHTQGSGKSLTMVFLATKLRRLPEAENPTIVIVTDRTDLDDQIT---- 351

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR-TYSEERPDTFVGP 187
                       F+    +        + L +++   +    +T    +    P      
Sbjct: 352 ----------GQFQRSGFANPIQAESGDSLRKALSGGAGTTVLTTVHKFHSAVPKRSSVI 401

Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR--RLNGWFYDIFNIPL 245
                + V  DEA         ++        PN   I  + T   + +    + F   L
Sbjct: 402 SKARNVFVMVDEAH---RTQYGALAARMRAGLPNACMIAFTGTPIDKKDRSTREAFGDYL 458

Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
             +       +    +   + E   +R  +D      E+   FP+   +  
Sbjct: 459 HRY-LIDQAVKDGATVPIYY-EMRDARIRIDGRDFEREVRAAFPELSEDEI 507


>gi|322702554|gb|EFY94192.1| DEAD/DEAH box helicase, putative [Metarhizium anisopliae ARSEF 23]
          Length = 1010

 Score = 44.9 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 35/258 (13%), Positives = 68/258 (26%), Gaps = 30/258 (11%)

Query: 15  LHEMLMHAECVLSFKNF-VMRFFPWGIKG---KPLEHFS-QPHRWQLEFMEAVDVHCHSN 69
           L  +    E  +    F +    P+  +G    P       P  WQ   ++A+D +    
Sbjct: 378 LPTLGGQLEIPVDPLEFQLSYCGPYLERGFDSSPDARVPFSPDAWQRTVLDAIDANKS-- 435

Query: 70  VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT---LWA 126
                       + A    GKT ++ + M  ++ +     ++ +A ++  +      + A
Sbjct: 436 ----------LFVVAPTSAGKTFISFYAMKKVLQSNDDDVLVYVAPTKALVNQIAAEVQA 485

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
             SK  S      W          +    ++L            I     S  +  +   
Sbjct: 486 RFSKAYSTQGKSVWAVHTRDYRINNPTGCQVLITV----PHILQIMLLAPSNSKTASSWA 541

Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM---TSNTRRLNGWFYDIFNI 243
                   +  DE        +  I      L P     +     N    N W       
Sbjct: 542 LRVKR---IIFDEVHCIGQSDDGVIWEQLLLLAPCPIIALSATVGNPMEFNDWLRGSEEA 598

Query: 244 PLEDWKRYQIDTRTVEGI 261
              D +      R  +  
Sbjct: 599 KGHDLEMILHPYRYSDLR 616


>gi|282162799|ref|YP_003355184.1| putative ATP-dependent helicase [Methanocella paludicola SANAE]
 gi|282155113|dbj|BAI60201.1| putative ATP-dependent helicase [Methanocella paludicola SANAE]
          Length = 933

 Score = 44.9 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 38/159 (23%), Gaps = 23/159 (14%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
             F++P   Q + + A+                   + A  G GKT       L  +   
Sbjct: 19  MGFTEPTETQEKAIPAIMSGDD------------VLVIAPTGTGKTETAMLPALHGVLNG 66

Query: 106 PGM---SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
            G     ++ I       ++ L   +++W   L            +H     A      +
Sbjct: 67  EGGEGFKVLYITPLRALNRDML-KRLTQWSKELGVSIEVRHGDTPMHERRKQALKPPDVL 125

Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
               +                    H      V  DE  
Sbjct: 126 ITTPETLQAIFMGLRMRN-------HLKTVKYVIVDEVH 157


>gi|254700053|ref|ZP_05161881.1| type I site-specific deoxyribonuclease, HsdR family protein
           [Brucella suis bv. 5 str. 513]
 gi|254705681|ref|ZP_05167509.1| type I site-specific deoxyribonuclease, HsdR family protein
           [Brucella pinnipedialis M163/99/10]
 gi|254710912|ref|ZP_05172723.1| type I site-specific deoxyribonuclease, HsdR family protein
           [Brucella pinnipedialis B2/94]
 gi|254712615|ref|ZP_05174426.1| type I site-specific deoxyribonuclease, HsdR family protein
           [Brucella ceti M644/93/1]
 gi|254715686|ref|ZP_05177497.1| type I site-specific deoxyribonuclease, HsdR family protein
           [Brucella ceti M13/05/1]
 gi|256157491|ref|ZP_05455409.1| type I site-specific deoxyribonuclease, HsdR family protein
           [Brucella ceti M490/95/1]
 gi|256253532|ref|ZP_05459068.1| type I site-specific deoxyribonuclease, HsdR family protein
           [Brucella ceti B1/94]
 gi|260167614|ref|ZP_05754425.1| type I site-specific deoxyribonuclease, HsdR family protein
           [Brucella sp. F5/99]
 gi|261217435|ref|ZP_05931716.1| type I restriction modification enzyme [Brucella ceti M13/05/1]
 gi|261220662|ref|ZP_05934943.1| type I restriction modification enzyme [Brucella ceti B1/94]
 gi|261313101|ref|ZP_05952298.1| type I restriction modification enzyme [Brucella pinnipedialis
           M163/99/10]
 gi|261318495|ref|ZP_05957692.1| type I restriction modification enzyme [Brucella pinnipedialis
           B2/94]
 gi|261320309|ref|ZP_05959506.1| type I restriction modification enzyme [Brucella ceti M644/93/1]
 gi|261750536|ref|ZP_05994245.1| type I restriction modification enzyme [Brucella suis bv. 5 str.
           513]
 gi|261757037|ref|ZP_06000746.1| HsdR, type I restriction-modification enzyme, R subunit [Brucella
           sp. F5/99]
 gi|265995988|ref|ZP_06108545.1| type I restriction modification enzyme [Brucella ceti M490/95/1]
 gi|260919246|gb|EEX85899.1| type I restriction modification enzyme [Brucella ceti B1/94]
 gi|260922524|gb|EEX89092.1| type I restriction modification enzyme [Brucella ceti M13/05/1]
 gi|261292999|gb|EEX96495.1| type I restriction modification enzyme [Brucella ceti M644/93/1]
 gi|261297718|gb|EEY01215.1| type I restriction modification enzyme [Brucella pinnipedialis
           B2/94]
 gi|261302127|gb|EEY05624.1| type I restriction modification enzyme [Brucella pinnipedialis
           M163/99/10]
 gi|261737021|gb|EEY25017.1| HsdR, type I restriction-modification enzyme, R subunit [Brucella
           sp. F5/99]
 gi|261740289|gb|EEY28215.1| type I restriction modification enzyme [Brucella suis bv. 5 str.
           513]
 gi|262550285|gb|EEZ06446.1| type I restriction modification enzyme [Brucella ceti M490/95/1]
          Length = 989

 Score = 44.9 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 81/291 (27%), Gaps = 32/291 (10%)

Query: 11  LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70
            +  L  +L  A  +   +NFV+     G + K L  + Q          AV        
Sbjct: 244 QDILLAGLLAPANLLDLIRNFVVFETIGGRRIKKLARYQQ--------FVAVGKAIERIR 295

Query: 71  NNSNPTIFKCAISAGRGIGKTTLNAWMM--LWLISTRPGMSIICIANSETQLKNTLWAEV 128
              NP      I   +G GK+    ++   L  +      +I+ + +             
Sbjct: 296 TAPNPQRRGGVIHHTQGSGKSLTMVFLATKLRRLPEAENPTIVIVTDRTDLDDQIT---- 351

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR-TYSEERPDTFVGP 187
                       F+    +        + L +++   +    +T    +    P      
Sbjct: 352 ----------GQFQRSGFANPIQAESGDSLRKALSGGAGTTVLTTVHKFHSAVPKRSSVI 401

Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR--RLNGWFYDIFNIPL 245
                + V  DEA         ++        PN   I  + T   + +    + F   L
Sbjct: 402 SKARNVFVMVDEAH---RTQYGALAARMRAGLPNACMIAFTGTPIDKKDRSTREAFGDYL 458

Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
             +       +    +   + E   +R  +D      E+   FP+   +  
Sbjct: 459 HRY-LIDQAVKDGATVPIYY-EMRDARIRIDGRDFEREVRAAFPELSEDEI 507


>gi|254690826|ref|ZP_05154080.1| HsdR, type I restriction-modification enzyme, R subunit [Brucella
           abortus bv. 6 str. 870]
 gi|256256008|ref|ZP_05461544.1| HsdR, type I restriction-modification enzyme, R subunit [Brucella
           abortus bv. 9 str. C68]
 gi|260756404|ref|ZP_05868752.1| type I restriction modification enzyme [Brucella abortus bv. 6 str.
           870]
 gi|260882228|ref|ZP_05893842.1| type I restriction modification enzyme [Brucella abortus bv. 9 str.
           C68]
 gi|297249367|ref|ZP_06933068.1| type I restriction enzyme, R subunit [Brucella abortus bv. 5 str.
           B3196]
 gi|260676512|gb|EEX63333.1| type I restriction modification enzyme [Brucella abortus bv. 6 str.
           870]
 gi|260871756|gb|EEX78825.1| type I restriction modification enzyme [Brucella abortus bv. 9 str.
           C68]
 gi|297173236|gb|EFH32600.1| type I restriction enzyme, R subunit [Brucella abortus bv. 5 str.
           B3196]
          Length = 989

 Score = 44.9 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 81/291 (27%), Gaps = 32/291 (10%)

Query: 11  LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70
            +  L  +L  A  +   +NFV+     G + K L  + Q          AV        
Sbjct: 244 QDILLAGLLAPANLLDLIRNFVVFETIGGRRIKKLARYQQ--------FVAVGKAIERIR 295

Query: 71  NNSNPTIFKCAISAGRGIGKTTLNAWMM--LWLISTRPGMSIICIANSETQLKNTLWAEV 128
              NP      I   +G GK+    ++   L  +      +I+ + +             
Sbjct: 296 TAPNPQRRGGVIHHTQGSGKSLTMVFLATKLRRLPEAENPTIVIVTDRTDLDDQIT---- 351

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR-TYSEERPDTFVGP 187
                       F+    +        + L +++   +    +T    +    P      
Sbjct: 352 ----------GQFQRSGFANPIQAESGDSLRKALSGGAGTTVLTTVHKFHSAVPKRSSVI 401

Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR--RLNGWFYDIFNIPL 245
                + V  DEA         ++        PN   I  + T   + +    + F   L
Sbjct: 402 SKARNVFVMVDEAH---RTQYGALAARMRAGLPNACMIAFTGTPIDKKDRSTREAFGDYL 458

Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
             +       +    +   + E   +R  +D      E+   FP+   +  
Sbjct: 459 HRY-LIDQAVKDGATVPIYY-EMRDARIRIDGRDFEREVRAAFPELSEDEI 507


>gi|238765012|ref|ZP_04625949.1| Terminase, ATPase subunit [Yersinia kristensenii ATCC 33638]
 gi|238696781|gb|EEP89561.1| Terminase, ATPase subunit [Yersinia kristensenii ATCC 33638]
          Length = 587

 Score = 44.9 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 31/328 (9%), Positives = 78/328 (23%), Gaps = 45/328 (13%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
           F+E    +             +  + + R IG T   A   L    T  G + I ++ S+
Sbjct: 140 FLETTFEYQKGWYRAGLQHRIRNILKS-RQIGATFYFAREALIDALTT-GRNQIFLSASK 197

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
            Q        +  +   +      +   L+     ++     ++    + +  +    + 
Sbjct: 198 AQAH-VFKNYIIDFARQVEVDLKGDPMVLANGARLFFLGTNIRTAQSYTGNLYLDEYFWI 256

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
            +  +             +      TP  +  S   F++            N +      
Sbjct: 257 PKFQELRKVASGMSLHKKWRTTYFSTPSSLAHSAYPFWSGE--------LFN-KGRKNKE 307

Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS-----------RYGLDSDVARIEILG 286
             I+         +       +       E  ++                    +  ++ 
Sbjct: 308 QHIYVDLSHSHLMHGALCGDGQWRQIVTVEDALAGGCNLFDLDQLALEYSPAEYQNLLMC 367

Query: 287 QFPQQEVNNFIPHNYIEEAM------SREAIDDLYAP-----LIMGCDIAGEGGDKTVVV 335
           +F   +  +  P   ++  M        +     Y P     + +G D +  G   +   
Sbjct: 368 EFVD-DKTSVFPFEELQGCMVDSLEEWDDFNPYAYRPFGYRAVWLGYDPSHTGD--SAGC 424

Query: 336 FRRGN--------IIEHIFDWSAKLIQE 355
                         I     W       
Sbjct: 425 VVLAPPLVPGGKFRILERHQWKGMDFAT 452


>gi|38640355|ref|NP_944278.1| Bcep22gp49 [Burkholderia phage Bcep22]
 gi|33860422|gb|AAQ54982.1| Bcep22gp49 [Burkholderia phage Bcep22]
          Length = 530

 Score = 44.9 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 35/323 (10%), Positives = 64/323 (19%), Gaps = 80/323 (24%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           I   R +G TTL   + L             IA      +           ++   +  F
Sbjct: 74  ILKARQLGFTTLICIIWLDHALFNANSRCGIIAQDRETAE-----------ALFRDKVKF 122

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
              +L                 +   H   + R  +  R  T    H          E  
Sbjct: 123 AYDNLPEALREAMPLANCTKAELLFAHNNSSIRVATSVRGGTIHRLH--------ISEFG 174

Query: 202 GT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP-----------LE 246
                 PD   + + G    +  +   ++ S      G FY+I                 
Sbjct: 175 KICAKYPDKAAEVVTGSIPAVPKSGILVIESTAEGREGEFYNITMQAEAIAQAGKPLTAR 234

Query: 247 DWKRYQIDTRTVEGIDSG--------------------------------FHEGIISRYG 274
           D++ +                                             +     + + 
Sbjct: 235 DYRFHFFPWWQAPEYRMDSAHVIITEKDRQYFETIEAKHGITIDAEQRAWYVATRDADFS 294

Query: 275 LDSDVARIEI----LGQFPQQEVNNFIPHNYIEEAMSREAIDDL----YAPLIMGCDIAG 326
            + +    E        F       +                 L      P     DI  
Sbjct: 295 GNEERMWQEYPSTPDEPFKVSTEGTYYAQQLAAARKQGRIKPSLPVLFNVPCFTFWDIGN 354

Query: 327 EGGDKTVVVFRRGNIIEHIFDWS 349
              D T +   +        +W 
Sbjct: 355 --SDGTAIWVLQ----RVEHEWR 371


>gi|322779508|gb|EFZ09700.1| hypothetical protein SINV_16605 [Solenopsis invicta]
          Length = 1232

 Score = 44.9 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 21/177 (11%), Positives = 45/177 (25%), Gaps = 25/177 (14%)

Query: 45   LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            L +FS  +  Q +    +    +              + A  G GKT      +  +   
Sbjct: 911  LYNFSHFNPIQTQIFHCLYHTDN-----------NVLLGAPTGSGKTIAAEIAIFRVFKQ 959

Query: 105  RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
             P   ++ IA  +  ++      ++ W   L  R    +  L           +   + I
Sbjct: 960  YPDRKVVYIAPLKALVRER----INDWKIRLEERLGRRVVEL--------TGDVSPDVKI 1007

Query: 165  DSKHYTITCRTYSEERPDTFVGPHN--THGMAVFNDEASGTPDIINKSILGFFTELN 219
             +    I       +                 +  DE     +     +    +  N
Sbjct: 1008 IAGANVIVTTPEKWDGISRSWQTRGYVKKVALIVIDEIHLLGEDRGPVLEVIVSRNN 1064


>gi|296169763|ref|ZP_06851378.1| prophage LambdaSa04 protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295895557|gb|EFG75256.1| prophage LambdaSa04 protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 520

 Score = 44.9 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 38/331 (11%), Positives = 73/331 (22%), Gaps = 56/331 (16%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS---AGRGIGKTTLNAWMMLWL--ISTR 105
           P  WQ+ ++ A          +S   +    I+     R  GKTT  A   ++L      
Sbjct: 22  PDIWQVAYLIAPVAGWVHKSPDSGNWVRIITIAYFEEPRKNGKTTTAAGFGIYLTAADGE 81

Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
            G  ++  A ++ Q    ++  + + ++  P         L  H       +        
Sbjct: 82  FGAQVVAAATTKDQA-GFVFEPIRQLVNKSP--------GLKRHMRALKHRITH------ 126

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225
                    +Y +   +     H         DE     D+     L   T        I
Sbjct: 127 -----AASGSYFQPIANAGDAQHGADIHGAIVDELHLHKDMALIEALETGTGSREQPLII 181

Query: 226 MTSNTR--RLNGWFYDIF----------------------------NIPLEDWKRYQIDT 255
             +     R +  +                                    E W++     
Sbjct: 182 YITTADAGRRHTPYDQKRTLIEQLARGVLKRPTTYGVVFAAEKADDPFAEETWRKANPGY 241

Query: 256 RTVEG-IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314
                                +        LG   +QE       ++   A   +     
Sbjct: 242 GISPTKRAMIEAAEKAKDSPAELARFLRLHLGIRTKQETRYLDVEDWDVNAAMIDLTRLK 301

Query: 315 YAPLIMGCDIAGEGGDKTVVVFRRGNIIEHI 345
                 G D+         V          +
Sbjct: 302 GRECFGGLDLGATSDLTAAVWVFPDGDAFDV 332


>gi|170782067|ref|YP_001710399.1| putative helicase [Clavibacter michiganensis subsp. sepedonicus]
 gi|169156635|emb|CAQ01787.1| putative helicase [Clavibacter michiganensis subsp. sepedonicus]
          Length = 823

 Score = 44.9 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 50/220 (22%), Gaps = 21/220 (9%)

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           +             S        ++A  G GKT + A   ++L   RP   I   A    
Sbjct: 30  LRFDLDPFQRAAAESLENGRSVLVAAPTGAGKT-IVAEFAVYLAMQRPSAKIFYTAP-MK 87

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
            L N  +AE+             E     +        +  +     ++   +T      
Sbjct: 88  ALSNQKYAELV-----------AEYGPDEVGLLTGDTNVNSR-----ARIVVMTTEVLRN 131

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF-WIMTSNTRRLNGWF 237
                           V  DE     D    ++        P     I  S T      F
Sbjct: 132 MLYADSDLLR--DLAFVIMDEVHYLADRFRGAVWEEVIIHLPQSVRMISLSATVSNAEEF 189

Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277
            D       +      + R V           +      S
Sbjct: 190 GDWLQAVRGETDVIVSEERPVPLEQHVIVRHRMLDLFDSS 229


>gi|163844962|ref|YP_001622617.1| HsdR family type I site-specific deoxyribonuclease [Brucella suis
           ATCC 23445]
 gi|163675685|gb|ABY39795.1| type I site-specific deoxyribonuclease, HsdR family [Brucella suis
           ATCC 23445]
          Length = 989

 Score = 44.9 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 81/291 (27%), Gaps = 32/291 (10%)

Query: 11  LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70
            +  L  +L  A  +   +NFV+     G + K L  + Q          AV        
Sbjct: 244 QDILLAGLLAPANLLDLIRNFVVFETIGGRRIKKLARYQQ--------FVAVGKAIERIR 295

Query: 71  NNSNPTIFKCAISAGRGIGKTTLNAWMM--LWLISTRPGMSIICIANSETQLKNTLWAEV 128
              NP      I   +G GK+    ++   L  +      +I+ + +             
Sbjct: 296 TAPNPQRRGGVIHHTQGSGKSLTMVFLATKLRRLPEAENPTIVIVTDRTDLDDQIT---- 351

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR-TYSEERPDTFVGP 187
                       F+    +        + L +++   +    +T    +    P      
Sbjct: 352 ----------GQFQRSGFANPIQAESGDSLRKALSGGAGTTVLTTVHKFHSAVPKRSSVI 401

Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR--RLNGWFYDIFNIPL 245
                + V  DEA         ++        PN   I  + T   + +    + F   L
Sbjct: 402 SKARNVFVMVDEAH---RTQYGALAARMRAGLPNACMIAFTGTPIDKKDRSTREAFGDYL 458

Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
             +       +    +   + E   +R  +D      E+   FP+   +  
Sbjct: 459 HRY-LIDQAVKDGATVPIYY-EMRDARIRIDGRDFEREVRAAFPELSEDEI 507


>gi|62317326|ref|YP_223179.1| HsdR restriction-modification enzyme, R subunit [Brucella abortus
           bv. 1 str. 9-941]
 gi|189022581|ref|YP_001932322.1| HsdR, type I restriction-modification enzyme, R subunit [Brucella
           abortus S19]
 gi|237816881|ref|ZP_04595873.1| type I site-specific deoxyribonuclease, HsdR family [Brucella
           abortus str. 2308 A]
 gi|254698607|ref|ZP_05160435.1| HsdR, type I restriction-modification enzyme, R subunit [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254732054|ref|ZP_05190632.1| HsdR, type I restriction-modification enzyme, R subunit [Brucella
           abortus bv. 4 str. 292]
 gi|260544563|ref|ZP_05820384.1| HsdR protein [Brucella abortus NCTC 8038]
 gi|260759836|ref|ZP_05872184.1| type I restriction modification enzyme [Brucella abortus bv. 4 str.
           292]
 gi|260763075|ref|ZP_05875407.1| type I restriction modification enzyme [Brucella abortus bv. 2 str.
           86/8/59]
 gi|62197519|gb|AAX75818.1| HsdR, type I restriction-modification enzyme, R subunit [Brucella
           abortus bv. 1 str. 9-941]
 gi|189021155|gb|ACD73876.1| HsdR, type I restriction-modification enzyme, R subunit [Brucella
           abortus S19]
 gi|237787694|gb|EEP61910.1| type I site-specific deoxyribonuclease, HsdR family [Brucella
           abortus str. 2308 A]
 gi|260097834|gb|EEW81708.1| HsdR protein [Brucella abortus NCTC 8038]
 gi|260670154|gb|EEX57094.1| type I restriction modification enzyme [Brucella abortus bv. 4 str.
           292]
 gi|260673496|gb|EEX60317.1| type I restriction modification enzyme [Brucella abortus bv. 2 str.
           86/8/59]
          Length = 989

 Score = 44.9 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 81/291 (27%), Gaps = 32/291 (10%)

Query: 11  LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70
            +  L  +L  A  +   +NFV+     G + K L  + Q          AV        
Sbjct: 244 QDILLAGLLAPANLLDLIRNFVVFETIGGRRIKKLARYQQ--------FVAVGKAIERIR 295

Query: 71  NNSNPTIFKCAISAGRGIGKTTLNAWMM--LWLISTRPGMSIICIANSETQLKNTLWAEV 128
              NP      I   +G GK+    ++   L  +      +I+ + +             
Sbjct: 296 TAPNPQRRGGVIHHTQGSGKSLTMVFLATKLRRLPEAENPTIVIVTDRTDLDDQIT---- 351

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR-TYSEERPDTFVGP 187
                       F+    +        + L +++   +    +T    +    P      
Sbjct: 352 ----------GQFQRSGFANPIQAESGDSLRKALSGGAGTTVLTTVHKFHSAVPKRSSVI 401

Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR--RLNGWFYDIFNIPL 245
                + V  DEA         ++        PN   I  + T   + +    + F   L
Sbjct: 402 SKARNVFVMVDEAH---RTQYGALAARMRAGLPNACMIAFTGTPIDKKDRSTREAFGDYL 458

Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
             +       +    +   + E   +R  +D      E+   FP+   +  
Sbjct: 459 HRY-LIDQAVKDGATVPIYY-EMRDARIRIDGRDFEREVRAAFPELSEDEI 507


>gi|52424157|ref|YP_087294.1| hypothetical protein MS0102 [Mannheimia succiniciproducens MBEL55E]
 gi|52306209|gb|AAU36709.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 511

 Score = 44.9 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 26/248 (10%), Positives = 55/248 (22%), Gaps = 34/248 (13%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
            +   R IG T   A     L ++  GM +  +  ++             ++    +   
Sbjct: 41  VVEKSRRIGLTWGEAADCALLAASNSGMDVWYVGYNKDMALE--------FIRDCANWAK 92

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS-EERPDTFVGPHNTHGMAVFNDE 199
           F   +                              +       +        G  V  DE
Sbjct: 93  FYGLAAGEIEETEEVFKEGDEKESILAFTIRFASGWRITALSSSPSNLRGKQG-LVIIDE 151

Query: 200 ASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257
           A+  P    + K+ +                                 + +  + I    
Sbjct: 152 AAFHPCLSELLKAAMALLMWGGRVHIISTHDGVDNPFNELIQEIREGKKPYSLHTITFED 211

Query: 258 ------------------VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299
                              +  +  +   I + YG D+     E+    P+     ++  
Sbjct: 212 AMKDGLYERICLRTNRAYSKEGEQQWEAEIRASYGEDAAE---ELDCI-PKNSGGKWLSR 267

Query: 300 NYIEEAMS 307
             IE  M 
Sbjct: 268 ALIESQMH 275


>gi|294056537|ref|YP_003550195.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615870|gb|ADE56025.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
          Length = 524

 Score = 44.9 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/212 (10%), Positives = 59/212 (27%), Gaps = 21/212 (9%)

Query: 87  GIGKTTLNAWMMLWLI-STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
           G GKT   A   L  +  +     ++ +  +          E+ +  + +P     ++Q+
Sbjct: 51  GSGKTAAFALPALHGLDLSNKATQVLVLCPTRELAVQVC-EEIHRLSTAMP-----KLQA 104

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
           L ++       +  Q   +    + +                          DEA    D
Sbjct: 105 LPVY---GGTPIDRQIRALKKGVHVVVGTPGRVMDHMKRKTLKTDSIRLCILDEADRMLD 161

Query: 206 IINKSILGFFTE--LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
           +  +  +    +      +    ++   R        F+   +  +  Q           
Sbjct: 162 MGFREDMEIILDAIPQERQTLFFSATMNRGVQGLIKAFSHDAKQIEIEQKTLT------- 214

Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVNN 295
              E I   Y    + +++E++ +    E   
Sbjct: 215 --VESIEQVYYEVRNRSKVEVMCRLLDMEPTQ 244


>gi|238788385|ref|ZP_04632179.1| Terminase, ATPase subunit [Yersinia frederiksenii ATCC 33641]
 gi|238723631|gb|EEQ15277.1| Terminase, ATPase subunit [Yersinia frederiksenii ATCC 33641]
          Length = 587

 Score = 44.9 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 31/328 (9%), Positives = 78/328 (23%), Gaps = 45/328 (13%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
           F+E    +             +  + + R IG T   A   L    T  G + I ++ S+
Sbjct: 140 FLETTFEYQKGWYRAGLQHRIRNILKS-RQIGATFYFAREALIDALTT-GRNQIFLSASK 197

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
            Q        +  +   +      +   L+     ++     ++    + +  +    + 
Sbjct: 198 AQAH-VFKNYIIDFARQVEVDLKGDPMVLANGARLFFLGTNIRTAQSYTGNLYLDEYFWI 256

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
            +  +             +      TP  +  S   F++            N +      
Sbjct: 257 PKFQELRKVASGMSLHKKWRTTYFSTPSSLAHSAYPFWSGE--------LFN-KGRKNKE 307

Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS-----------RYGLDSDVARIEILG 286
             I+         +       +       E  ++                    +  ++ 
Sbjct: 308 QHIYVDLSHSHLMHGALCGDGQWRQIVTVEDALAGGCNLFDLDQLALEYSPAEYQNLLMC 367

Query: 287 QFPQQEVNNFIPHNYIEEAM------SREAIDDLYAP-----LIMGCDIAGEGGDKTVVV 335
           +F   +  +  P   ++  M        +     Y P     + +G D +  G   +   
Sbjct: 368 EFVD-DKTSVFPFEELQGCMVDSLEEWDDFNPYAYRPFGYRAVWLGYDPSHTGD--SAGC 424

Query: 336 FRRGN--------IIEHIFDWSAKLIQE 355
                         I     W       
Sbjct: 425 VVLAPPLVLGGKFRILERHQWKGMDFAT 452


>gi|333004961|gb|EGK24481.1| phage Terminase family protein [Shigella flexneri VA-6]
          Length = 472

 Score = 44.9 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 49/232 (21%), Gaps = 25/232 (10%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             WQ      +             T     +   R   K+T  A +  W +    G   I
Sbjct: 9   EPWQQFAFACILGFKVKATGRRKYTSAFIEV--PRKNAKSTTAAILANWFLIMENGQQDI 66

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A         ++ +  +             + L    +    +++        K    
Sbjct: 67  YTAAVSRDQARIVFDDARQMC--------LLSRPLRRRVNIQAHKVIHPKSNSLLKPLAA 118

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
              T     P                DE    PD    S L       P       + + 
Sbjct: 119 KAATIEGTNPS-----------LSIVDEYHLHPDNGVYSALELGMGARPEGLLFAITTSG 167

Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283
                          D+    +D   V          +  +  +D     I+
Sbjct: 168 SNVVSACKQHY----DYCCQILDGEEVNDSIFVLIYELDDKNEVDDPAMWIK 215


>gi|315619058|gb|EFU99640.1| phage Terminase family protein [Escherichia coli 3431]
          Length = 500

 Score = 44.9 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 48/232 (20%), Gaps = 25/232 (10%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             WQ      +             T     +   R   K+T  A +  W +    G   I
Sbjct: 17  EPWQQFAFACILGFKVKATGRRKYTSAFIEV--PRKNAKSTTAAILANWFLIMENGQQDI 74

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A         ++ +  +             + L    +    +++        K    
Sbjct: 75  YTAAVSRDQARIVFDDARQMC--------LLSRPLRRRVNIQAHKVIHPKSNSLLKPLAA 126

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
              T     P                DE    PD    S L       P       + + 
Sbjct: 127 KAATIEGTNPS-----------LSIVDEYHLHPDNGVYSALELGMGARPEGLLFAITTSG 175

Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283
                          D+    +D   V          +     +D     I+
Sbjct: 176 SNVVSACKQHY----DYCCQILDGEEVNDSIFVLIYELDDENEVDDPAMWIK 223


>gi|300856304|ref|YP_003781288.1| putative phage terminaselarge subunit [Clostridium ljungdahlii DSM
           13528]
 gi|300436419|gb|ADK16186.1| putative phage terminase, large subunit [Clostridium ljungdahlii
           DSM 13528]
          Length = 410

 Score = 44.9 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 29/281 (10%), Positives = 79/281 (28%), Gaps = 43/281 (15%)

Query: 96  WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
            + L L   +   + + +      ++++ ++ + + ++ +      +  +  +       
Sbjct: 2   ALKLILKLLQEKRTALVVREVFDTIRDSCYSLLEEIITDMGLDDKIKCVTSPM------- 54

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
                 +   +    I       ++P         +   V+ +E S       K +LG  
Sbjct: 55  -----QVKFPNGSKIIFKGM---DKPSKLKSI--NNVSIVWIEECSEVKYAGFKELLGRL 104

Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIF--------------------NIPLEDWKRYQIDT 255
              + +   I+++N    + W Y  F                     +   +   +    
Sbjct: 105 RHPSLSLHMILSTNPVSKDNWTYKHFFRNDKKKIFILDDEELYKKGIVIRNNTYYHHSTA 164

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI-EEAMSREAIDDL 314
                +   + E +      D D+ RI   G+F                 A+ +   +  
Sbjct: 165 DDNLFLPESYTEQLDELKTYDPDLYRIARKGRFGINGRRVLPQFEVAPHYAVLQSIGNIK 224

Query: 315 YAPLIMGCDIAGEGGDKTVV---VFRRGNIIEHI-FDWSAK 351
                +G D  G       +        N I +I +++   
Sbjct: 225 NPIKRVGMDF-GFETSYNAIVRMCIDDDNKILYIYWEYYKN 264


>gi|330874284|gb|EGH08433.1| hypothetical protein PSYMP_06646 [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 684

 Score = 44.9 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 40/317 (12%), Positives = 77/317 (24%), Gaps = 72/317 (22%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           I   R +G T   A              +   A+           E+ +   +   + WF
Sbjct: 177 ILKSRQVGLTYYFAGEAFMDAVLTGDNQVFLSASRAQS-------EIFRSYIIAFAQAWF 229

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
            ++                 +  D K +      +      T  G H      V+ DE  
Sbjct: 230 GLELT----------GNPIVLSKDGKPW--AELRFLSTNSSTAQGHHGH----VYVDEYF 273

Query: 202 GTPDIINKSILGFFTELNPNRFW--IMTSNTRRLNGWFYDIFN----------------- 242
              D   + +    + +  ++ W     S    ++   Y  +                  
Sbjct: 274 WIRD--FEKLNTVASAMATHKKWRKTYFSTPSAVSHQAYPFWQGEKFRNSKRKNAKEPWP 331

Query: 243 ----------IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292
                      P   W++       + G    F    +     D D  +   + +F    
Sbjct: 332 SDKQISAGALCPDGQWRKVITILDAIAGGCDLFDLEQLQLEYDD-DKFQQLFMCKFIDSS 390

Query: 293 VNNFIPHNYIEEAMSR----------EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGN-- 340
            + F     +E   S           +      +P+ +G D +    D T VV       
Sbjct: 391 QSAF-SLADLERCYSDLSLWADFDPDDPRPYGNSPVWIGYDPSRTRDDATCVVIAPPLEN 449

Query: 341 ----IIEHIFDWSAKLI 353
                I     W  +  
Sbjct: 450 GGKFRILEKHSWRGQSF 466


>gi|254695866|ref|ZP_05157694.1| HsdR, type I restriction-modification enzyme, R subunit [Brucella
           abortus bv. 3 str. Tulya]
 gi|261216286|ref|ZP_05930567.1| type I restriction modification enzyme [Brucella abortus bv. 3 str.
           Tulya]
 gi|260917893|gb|EEX84754.1| type I restriction modification enzyme [Brucella abortus bv. 3 str.
           Tulya]
          Length = 989

 Score = 44.9 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 81/291 (27%), Gaps = 32/291 (10%)

Query: 11  LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70
            +  L  +L  A  +   +NFV+     G + K L  + Q          AV        
Sbjct: 244 QDILLAGLLAPANLLDLIRNFVVFETIGGRRIKKLARYQQ--------FVAVGKAIERIR 295

Query: 71  NNSNPTIFKCAISAGRGIGKTTLNAWMM--LWLISTRPGMSIICIANSETQLKNTLWAEV 128
              NP      I   +G GK+    ++   L  +      +I+ + +             
Sbjct: 296 TAPNPQRRGGLIHHTQGSGKSLTMVFLATKLRRLPEAENPTIVIVTDRTDLDDQIT---- 351

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR-TYSEERPDTFVGP 187
                       F+    +        + L +++   +    +T    +    P      
Sbjct: 352 ----------GQFQRSGFANPIQAESGDSLRKALSGGAGTTVLTTVHKFHSAVPKRSSVI 401

Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR--RLNGWFYDIFNIPL 245
                + V  DEA         ++        PN   I  + T   + +    + F   L
Sbjct: 402 SKARNVFVMVDEAH---RTQYGALAARMRAGLPNACMIAFTGTPIDKKDRSTREAFGDYL 458

Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
             +       +    +   + E   +R  +D      E+   FP+   +  
Sbjct: 459 HRY-LIDQAVKDGATVPIYY-EMRDARIRIDGRDFEREVRAAFPELSEDEI 507


>gi|67623831|ref|XP_668198.1| DEAD/DEAH box helicase [Cryptosporidium hominis TU502]
 gi|54659384|gb|EAL37963.1| DEAD/DEAH box helicase [Cryptosporidium hominis]
          Length = 2123

 Score = 44.9 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 36/299 (12%), Positives = 80/299 (26%), Gaps = 34/299 (11%)

Query: 51   PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
            P  WQ + ++ +D    +             + A    GKT    +  +  +      S+
Sbjct: 1054 PDYWQKQILDIIDSGDSA------------LVCAPTASGKTF-ICYYAMEQVLRFDNESV 1100

Query: 111  ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
            +        L + + AE++       + +   +  L      +   +  Q   + +  + 
Sbjct: 1101 VVFIAPTKALADQVHAEIAYRFGSKTYPNHSRISLLCKLSRDYSINIPTQCQILITLPFM 1160

Query: 171  ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM---T 227
            +     S                 V  DE     +           +L P  +  +    
Sbjct: 1161 LELLLMSTAYQQWVS-----KIKFVIFDEVHCINEAEGGVYWERIFQLIPCPYLCLSATI 1215

Query: 228  SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL-- 285
             N      W   I  +P           R  +     + EG +      S ++   +L  
Sbjct: 1216 GNPLAFYNWLQRIGKLPSSKVHFVTYSERYADLSTLVYDEGNLYPLNPLSSLSYDRVLYY 1275

Query: 286  ---GQF---PQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
               G F   P   ++ F+    + +  S     +     +   D          +  R+
Sbjct: 1276 GLPGDFYLPPNDGLDLFLSLKELLKCNS-----EATKEYLAWLDPQFFFSGTPAITKRQ 1329


>gi|320155900|ref|YP_004188279.1| helicase-related protein [Vibrio vulnificus MO6-24/O]
 gi|319931212|gb|ADV86076.1| helicase-related protein [Vibrio vulnificus MO6-24/O]
          Length = 968

 Score = 44.9 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 51/184 (27%), Gaps = 34/184 (18%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P+  QL+ ++ +                +  +  G G+GKT L+A    +         +
Sbjct: 218 PNSAQLDALQRLSETRQKGNV-------RGLVVMGTGMGKTWLSA----FDAKQLEAKRV 266

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + +A+ E  L   L      W                   +G+Y    ++          
Sbjct: 267 LFVAHREEILTQALMTFAKLW---------------PQKSAGYYHGKSKERNK-----EM 306

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
           +     +  +          H   +  DE          +I    +   P     +T+  
Sbjct: 307 LFASVQTLGKAAHLKHFAPDHFDYIVVDEFHHASAKTYLNI---LSYFEPKFLLGLTATP 363

Query: 231 RRLN 234
            R +
Sbjct: 364 ERTD 367


>gi|209875625|ref|XP_002139255.1| DEAD/DEAH box helicase [Cryptosporidium muris RN66]
 gi|209554861|gb|EEA04906.1| DEAD/DEAH box helicase, putative [Cryptosporidium muris RN66]
          Length = 2034

 Score = 44.9 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 43/342 (12%), Positives = 93/342 (27%), Gaps = 36/342 (10%)

Query: 1    MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQ---------- 50
            + +++S  + L   L     + +  L  K  +   F     G   E  +           
Sbjct: 901  VEKMVSEMESLYISLLNSGRYDKLALHIKEGLEAAFQLRYMGADFERSTGSIVDSRVLFL 960

Query: 51   PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
            P  WQ   ++ +D    +             + A    GKT    +  +  +      S+
Sbjct: 961  PDYWQKYILDIIDKGDSA------------LVCAPTASGKTF-ICYYAMEQVLRYDNESV 1007

Query: 111  ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
            +        L + + AE+S       + +  ++         +   +  Q   + +  Y 
Sbjct: 1008 VVFVAPTKALADQVHAEISYRFGSKTYPNHSKISLFCKLSRDYSINIPTQCQILITLPYM 1067

Query: 171  ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM---T 227
            +     S                 V  DE     +           +L P ++  +    
Sbjct: 1068 LELLLMSSVYQSWVS-----KIKFVIFDEVHCINESEGGVYWERILQLIPCQYLCLSATI 1122

Query: 228  SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL-----DSDVARI 282
             N      W   I   P         + R  +     +H+G +             V   
Sbjct: 1123 GNPYSFYNWLQKIKKTPNSQVHLVTYNERYADLSTLIYHQGDLYPLNPVLALSYERVLNY 1182

Query: 283  EILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI 324
            E+ G F     +    +  I E + ++   + +   +   D 
Sbjct: 1183 ELPGDFYLTPADCLDLYLAISEIIKKDEQKEPFEQYVYWLDP 1224


>gi|223935635|ref|ZP_03627551.1| protein of unknown function DUF264 [bacterium Ellin514]
 gi|223895643|gb|EEF62088.1| protein of unknown function DUF264 [bacterium Ellin514]
          Length = 437

 Score = 44.9 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 32/283 (11%), Positives = 74/283 (26%), Gaps = 49/283 (17%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGM-SIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            +   R IG +   A+  +  ++       +   +  + Q +         +L       
Sbjct: 24  IVEKSRQIGFSYCTAYSAVRRVAAEEERLDVWVSSRDDAQAR--------LFLEDCKEWA 75

Query: 140 WFEMQSLSLHPS-GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                +        + ++    +  +  K         S          H      V  D
Sbjct: 76  RTMQIAEPDADEVVFDSKTDFSAHVLQFKTGLRIYSLSSNPNALAGKRGH------VILD 129

Query: 199 EASGTPDI--INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED------WKR 250
           E +   D   + +      T        +   +T R     ++     +++      W  
Sbjct: 130 EFALHADQRLLYRIAKPVTTWGG----QLEIISTHRGANSVFNEMIRGIKENGNKMGWSH 185

Query: 251 YQIDTRTV--------------EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
           +++                          +   +    LD +    E     P  E + F
Sbjct: 186 HKVTLHDAIAEGLVERINAKTGRNESREAYLARVESECLDQEQWLQEYCCV-PADETSAF 244

Query: 297 IPHNYIEEAMSR-----EAIDDLYAPLIMGCDIAGEGGDKTVV 334
           I ++ I             + +   PL +G D+  +  D TV+
Sbjct: 245 ITYDMISGCEDDCLKDFNYLAECKNPLYLGVDVGRK-RDLTVM 286


>gi|260855405|ref|YP_003229296.1| putative terminase large subunit [Escherichia coli O26:H11 str.
           11368]
 gi|257754054|dbj|BAI25556.1| putative terminase large subunit [Escherichia coli O26:H11 str.
           11368]
          Length = 492

 Score = 44.9 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 48/232 (20%), Gaps = 25/232 (10%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             WQ      +             T     +   R   K+T  A +  W +    G   I
Sbjct: 9   EPWQQFAFACILGFKVKATGRRKYTSAFIEV--PRKNAKSTTAAILANWFLIMENGQQDI 66

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A         ++ +  +             + L    +    +++        K    
Sbjct: 67  YTAAVSRDQARIVFDDARQMC--------LLSRPLRRRVNIQAHKVIHPKSNSLLKPLAA 118

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
              T     P                DE    PD    S L       P       + + 
Sbjct: 119 KAATIEGTNPS-----------LSIVDEYHLHPDNGVYSALELGMGARPEGLLFAITTSG 167

Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283
                          D+    +D   V          +     +D     I+
Sbjct: 168 SNVVSACKQHY----DYCCQILDGEEVNDSIFVLIYELDDENEVDDPAMWIK 215


>gi|153839366|ref|ZP_01992033.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ3810]
 gi|149747114|gb|EDM58102.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ3810]
          Length = 407

 Score = 44.9 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 45/318 (14%), Positives = 83/318 (26%), Gaps = 50/318 (15%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           +      + +P + Q E +                       SA  G GKT       L 
Sbjct: 16  EAIEEMGYERPTKIQAEAIPQALDG------------RDILASAPTGTGKTAAFVLPALQ 63

Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
            +   P        I+ +  +         A+ ++ L+     + F +     +      
Sbjct: 64  YLQDFPRRKPGPARILILTPTRELAMQV--ADQARALAKKTKLNIFTITGGVQYQEHADI 121

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
               Q +        +                       +  DEA    D+     +   
Sbjct: 122 LATTQDI--------VVATPGRLREYIDAERFDCRAIEWLVLDEADRMLDMGFAPTVDRL 173

Query: 216 TELNPNRFWIMTSNTR----RLNGWFYDIFNIP---------LEDWKRYQIDTR-TVEGI 261
           +     R   +  +       + G+  D+ N P          E  K  Q   R      
Sbjct: 174 SNECRWRKQTLLFSATLEGKGVEGFTADLLNEPAEIDAKSPLRERKKIAQWYHRADSAEH 233

Query: 262 DSGFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AID 312
                + II+     + V     E L +   Q  +  IP ++I  E    R         
Sbjct: 234 KLALLKHIITEQAERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAIARFR 293

Query: 313 DLYAPLIMGCDIAGEGGD 330
           D    +++  D+A  G D
Sbjct: 294 DGTVNVLLATDVAARGID 311


>gi|325679243|ref|ZP_08158831.1| CRISPR-associated endonuclease Cas3-HD [Ruminococcus albus 8]
 gi|324109069|gb|EGC03297.1| CRISPR-associated endonuclease Cas3-HD [Ruminococcus albus 8]
          Length = 773

 Score = 44.9 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 68/265 (25%), Gaps = 16/265 (6%)

Query: 40  IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99
            K K  E  + P   Q     ++   C +   N      +  +    G GKT  +    +
Sbjct: 224 EKLKAFEKKTDPISRQR---RSISDRCAAFAENRVG-ACRLIV--PTGGGKTLSSMRFAI 277

Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159
                     I  IA   + L+                 H+ +  +     + +    L 
Sbjct: 278 KQCRKFGLERIFYIAPFMSILEQNSDVIKEIAGDDNILEHYSDFAADIEDENEYSEYQLR 337

Query: 160 QSMGIDS---KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP---DIINKSILG 213
                +            T   E+  +    H      +  DE    P     +    + 
Sbjct: 338 TQHWDEPVITTTMVQFLNTLFSEKSSSVKRMHRLSNAVIIIDEVQSVPLRCTNLFSLAVN 397

Query: 214 FFTEL-NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISR 272
           F T++          +          +   +P + +      +   +       +  + +
Sbjct: 398 FLTKVCGSTVVLCSATQPPFDKN---ERGLLPDDKFDMTGDYSEDFKVFRRTELKPALEK 454

Query: 273 YGLDSDVARIEILGQFPQQEVNNFI 297
           YG D D A      +F +      +
Sbjct: 455 YGHDFDSAADFCEERFEENGDMLLV 479


>gi|256851698|ref|ZP_05557086.1| phage DEAD box family helicase [Lactobacillus jensenii 27-2-CHN]
 gi|260661584|ref|ZP_05862496.1| phage DEAD box family helicase [Lactobacillus jensenii 115-3-CHN]
 gi|282934218|ref|ZP_06339495.1| phage DEAD-box family helicase [Lactobacillus jensenii 208-1]
 gi|297205316|ref|ZP_06922712.1| helicase [Lactobacillus jensenii JV-V16]
 gi|256615656|gb|EEU20845.1| phage DEAD box family helicase [Lactobacillus jensenii 27-2-CHN]
 gi|260547641|gb|EEX23619.1| phage DEAD box family helicase [Lactobacillus jensenii 115-3-CHN]
 gi|281301692|gb|EFA93959.1| phage DEAD-box family helicase [Lactobacillus jensenii 208-1]
 gi|297149894|gb|EFH30191.1| helicase [Lactobacillus jensenii JV-V16]
          Length = 936

 Score = 44.9 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 57/184 (30%), Gaps = 32/184 (17%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P++ Q E ++ +    +           +  + +  G GKT L A+ +            
Sbjct: 202 PNKMQREALDNLFEVINQGQ-------RRALVVSATGTGKTYLAAFAV----KQYKPKRF 250

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + + +     K T+ A   K +      +     +                    +K+  
Sbjct: 251 LYLVHRTQIAKKTM-ASFQKVIGGHKKDYGLLSGN---------------HHDYSAKYLF 294

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
            T +T S++  +            +  DEA  +     + IL +     P     +T+  
Sbjct: 295 ATVQTLSQD--ELLKTIDPAEFDFILIDEAHRSAAPSYQKILNYL---EPQFCLGLTATP 349

Query: 231 RRLN 234
            R++
Sbjct: 350 ERMD 353


>gi|154250084|ref|YP_001410909.1| type III restriction protein res subunit [Fervidobacterium nodosum
           Rt17-B1]
 gi|154154020|gb|ABS61252.1| type III restriction protein res subunit [Fervidobacterium nodosum
           Rt17-B1]
          Length = 848

 Score = 44.9 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 65/248 (26%), Gaps = 56/248 (22%)

Query: 8   DQKLEQELHEMLMHAECVLSFKNFVM------RFFPWGIKGKPLEHFSQ----------- 50
           D+ +EQ  +     A+   S    +         F        LE               
Sbjct: 178 DKFIEQ--YAEKWAAKKSDSEYEGLKNLEKDIYVFESDECETNLEEMEGIEQSKSELSNL 235

Query: 51  ---PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107
              P+  Q E +  +      N   +        + A  G+GKT L A+  +        
Sbjct: 236 PIIPNEVQQEVLREL------NNTRAEGFTKALVVLA-TGVGKTFLAAFDSMQF------ 282

Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
             +  IA+ E  LK                    +     + P+             D+ 
Sbjct: 283 NRVFFIAHREEILKQ------------------AKSTFEKVRPTSRMGFFTSSGKDTDAD 324

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
               +  T  +E           +   +  DE         K +    +  NP     +T
Sbjct: 325 IVFASVFTIGKEEYLNDDYFPPDYFDYIIIDEFHHAAAESYKKL---LSYFNPKFLLGLT 381

Query: 228 SNTRRLNG 235
           +   R++G
Sbjct: 382 ATPERMDG 389


>gi|109897022|ref|YP_660277.1| hypothetical protein Patl_0695 [Pseudoalteromonas atlantica T6c]
 gi|109699303|gb|ABG39223.1| protein of unknown function DUF264 [Pseudoalteromonas atlantica
           T6c]
          Length = 577

 Score = 44.9 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 45/344 (13%), Positives = 88/344 (25%), Gaps = 74/344 (21%)

Query: 60  EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
             V        +       +  + + R IG T   AW  L       G + I ++ S +Q
Sbjct: 134 NEVFFDYQKRWHAHKDQRTRFILKS-RQIGATYYFAWEALEDAILT-GKNKIFLSASRSQ 191

Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
           +       V +       R +FE++             +  S        +   RT    
Sbjct: 192 V------MVFRAYICAFARKYFEVE--------LKGSPIILSNEAQLHFLSTNSRTAQSY 237

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
             D            ++ DE     D   I     G  +  + +    + S     +   
Sbjct: 238 NGD------------LYVDEVFWMNDFNNIWHVAKGMAS--HKHWTRTLISTPSSKSHEA 283

Query: 238 YDIF---------------------------NIPLEDWKRYQIDTRTVEGIDSGFHEGII 270
           Y ++                           ++  +   R  +             +   
Sbjct: 284 YTMWSGDRYNQGRKDEDKQELKVNHATLYGGHLAKDRIWRDFVTVEDAANDGCTLFDIDE 343

Query: 271 SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAP-------LIMG 321
            +     D      + +F     + F   + ++ A  R         AP       + +G
Sbjct: 344 LKDENTPDEFDNLYMCEFVDDSHSVFKLADLLKCATDRQHWKDYRERAPRPFLNRAVWLG 403

Query: 322 CDIAGEGGDKT-VVV---FRRGNIIEHIFD--WSAKLIQETNQE 359
            D A    D T  +V      G     +    +  K ++E   E
Sbjct: 404 YDPARSRDDATLAIVAPPVLPGEKFRVLERIYFKGKDLREQAVE 447


>gi|66357938|ref|XP_626147.1| SPAC694.02. SKI family SFII helicase [Cryptosporidium parvum Iowa II]
 gi|46227112|gb|EAK88062.1| SPAC694.02. SKI family SFII helicase [Cryptosporidium parvum Iowa II]
          Length = 2123

 Score = 44.9 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 37/299 (12%), Positives = 83/299 (27%), Gaps = 34/299 (11%)

Query: 51   PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
            P  WQ + ++ +D    +             + A    GKT    +  +  +      S+
Sbjct: 1054 PDYWQKQILDIIDSGDSA------------LVCAPTASGKTF-ICYYAMEQVLRFDNESV 1100

Query: 111  ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
            +        L + + AE++       + +   +  L      +   +  Q   + +  + 
Sbjct: 1101 VVFIAPTKALADQVHAEIAYRFGSKTYPNHSRISLLCKLSRDYSINIPTQCQILITLPFM 1160

Query: 171  ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM---T 227
            +     S     T+    +     V  DE     +           +L P  +  +    
Sbjct: 1161 LELLLMS----TTYQQWVS-KIKFVIFDEVHCINEAEGGVYWERIFQLIPCPYLCLSATI 1215

Query: 228  SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL-- 285
             N      W   I  +P           R  +     + EG +      S ++   +L  
Sbjct: 1216 GNPLAFYNWLQRIGKLPSSKVHFVTYSERYADLSTLVYDEGNLYPLNPLSSLSYDRVLYY 1275

Query: 286  ---GQF---PQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338
               G F   P   ++ F+    + +  S     +     +   D          +  R+
Sbjct: 1276 GLPGDFYLPPNDGLDLFLSLKELLKCNS-----EATKEYLAWLDPQFFFSGTPAITKRQ 1329


>gi|239627489|ref|ZP_04670520.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517635|gb|EEQ57501.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 728

 Score = 44.9 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 45/171 (26%), Gaps = 9/171 (5%)

Query: 54  WQLE-FMEAVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSII 111
           +Q E  ++         V +      +  +     G GKT  +    L          II
Sbjct: 210 FQCETALQKTRALLQKQVFDKAGEEAEIYLMNMPTGSGKTLCSLKFALERAIRSGKKRII 269

Query: 112 CIANS---ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            +        Q   T    + K   +L H+  F       +   +       +   D++ 
Sbjct: 270 YVIPYNSIIDQAAGTFERILGKDAELLRHQSTFSYDDREDYSEDYGQTAKLAAENWDAQL 329

Query: 169 YTITC----RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
              T      +    +       HN     +  DEA   P    +  L   
Sbjct: 330 IITTAVQFFESIYANKRGKLRKLHNMADSVLIFDEAHMMPQDYLQPCLKAI 380


>gi|290960848|ref|YP_003492030.1| phage terminase large subunit [Streptomyces scabiei 87.22]
 gi|260650374|emb|CBG73490.1| phage terminase (large subunit) [Streptomyces scabiei 87.22]
          Length = 598

 Score = 44.9 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 24/189 (12%), Positives = 50/189 (26%), Gaps = 27/189 (14%)

Query: 51  PHRWQLEFMEAVDVHCHS---NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL--ISTR 105
           P  WQ+ ++ A          + +     I    +   R  GK+TL+  + ++L      
Sbjct: 101 PDPWQVAWIIAPVFGWVRFDADADMYVRIITDLYVDVPRKNGKSTLSGGLAIYLTCADGE 160

Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
           PG  +I  A ++ Q    ++  + +     P                     L+  +   
Sbjct: 161 PGAQVIAAATTKQQA-GYVFTPIRQLAERAP--------------------ALKGHVKPY 199

Query: 166 SKHYTITCRTYSEER-PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
                        E         H  +      DE     D     ++   T        
Sbjct: 200 RGKIIHPKSGSYFEVIASVADAQHGANLHGAVIDELHVHKDPEMVEVIETGTGSRRQPLI 259

Query: 225 IMTSNTRRL 233
           ++ +     
Sbjct: 260 VIITTADSG 268


>gi|300362252|ref|ZP_07058428.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           gasseri JV-V03]
 gi|300353243|gb|EFJ69115.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           gasseri JV-V03]
          Length = 464

 Score = 44.9 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 61/229 (26%), Gaps = 23/229 (10%)

Query: 42  GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101
           G    +FS+P + Q   + A+  +                + A  G GKT      +L +
Sbjct: 23  GLEKINFSKPTKVQAAVIPALLNN------------KNVVVQAATGSGKTHAYLLPLLNM 70

Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
           I     ++   +     +L N L+    +       R    +     +  G      +  
Sbjct: 71  IDENAPVTQAVVTAPSRELANQLYKVARQ------LRDASGLNISIEYLGGGNDRNRQIE 124

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG-TPDIINKSILGFFTELNP 220
              +     I           +    +  +  A   DEA           +    ++L+ 
Sbjct: 125 KAENRAPQLIIATPGRLHDFASKKVINLDNVKAFIIDEADMTLDMGFLGQMDEIISKLDK 184

Query: 221 NRFWIMTSN--TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267
                  S     +L  +     + P  D+            I +   +
Sbjct: 185 KVVLGAFSATIPVKLENFLRKYMSKP--DFIVIDNPAIIAPTIQNDLID 231


>gi|126668852|ref|ZP_01739797.1| putative ATP-dependent helicase [Marinobacter sp. ELB17]
 gi|126668909|ref|ZP_01739852.1| putative ATP-dependent helicase [Marinobacter sp. ELB17]
 gi|126626647|gb|EAZ97301.1| putative ATP-dependent helicase [Marinobacter sp. ELB17]
 gi|126626685|gb|EAZ97337.1| putative ATP-dependent helicase [Marinobacter sp. ELB17]
          Length = 868

 Score = 44.9 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 71/270 (26%), Gaps = 41/270 (15%)

Query: 45  LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
           L +F     +QLE + A        V           I+   G GK+ + A +       
Sbjct: 44  LRNFGNLRDYQLEAVLAAAFRIRKTVEP-------ILITLPTGSGKSWVIAAL------- 89

Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
                    A+   ++ +    +V K + +   +         +  +G+ A +    +  
Sbjct: 90  ---------ASVVKEMSDARSTKVKKVMVLAHSKELVAQNHQKMGAAGYKATIYSAGLST 140

Query: 165 DSKHY-TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
                  +     S           +    AVF DEA   P    + I      +NPN  
Sbjct: 141 RDASGDVVFGSRQSIINAVGEFAQLDYEFSAVFVDEAHSMPTQTREIIE-ALRSVNPNLR 199

Query: 224 WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA--- 280
            I  + T    G  Y        D +  +             ++  I     D  +    
Sbjct: 200 VIGLTATPYALGKGYIFAQDTFRDLEPMRDIYAKEPYFAERVYDKCIEELFADEQLCPPI 259

Query: 281 -------------RIEILGQFPQQEVNNFI 297
                           + G F +   N   
Sbjct: 260 LGTISDHYNTEALERTVGGSFSEASNNAVF 289


>gi|326202755|ref|ZP_08192623.1| Protein of unknown function DUF3427 [Clostridium papyrosolvens DSM
           2782]
 gi|325987339|gb|EGD48167.1| Protein of unknown function DUF3427 [Clostridium papyrosolvens DSM
           2782]
          Length = 1047

 Score = 44.9 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 62/188 (32%), Gaps = 30/188 (15%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PG 107
            P+ +Q E +E ++      V       ++  + A  G GKT ++A+      S      
Sbjct: 320 HPYPYQSEILEKLEA--EREVKRH----YRNLVVAATGTGKTVISAFDYKHFFSKNKGKP 373

Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
             ++ IA+ E  LK ++      + ++L   ++ E+   S  P       +        +
Sbjct: 374 CRLLFIAHREEILKQSMLC----FRAILKDANFGELYVGSYIPESIDHLFISIQTFNSKE 429

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
            Y  T R +                  +  DE         + +        P     +T
Sbjct: 430 FYKYTTREF---------------YDYIVVDEFHHVAAPTYQIL---LDYYQPKILLGLT 471

Query: 228 SNTRRLNG 235
           +   R++G
Sbjct: 472 ATPERMDG 479


>gi|294676866|ref|YP_003577481.1| type I restriction-modification system RcaSBIIIP subunit R
           [Rhodobacter capsulatus SB 1003]
 gi|294475686|gb|ADE85074.1| type I restriction-modification system RcaSBIIIP, R subunit
           [Rhodobacter capsulatus SB 1003]
          Length = 817

 Score = 44.9 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 21/194 (10%), Positives = 53/194 (27%), Gaps = 12/194 (6%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
               +P  +Q+  + A         N       +  +    G GKT     ++       
Sbjct: 161 GSGKEPRYYQINAVNAAMEAIGRGEN-------RVLLVMATGTGKTYTAFQIIWRYRQAF 213

Query: 106 PGMSIICIANSETQLKNTL---WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
           PG  I+ +A+    +  T+   +   S  ++ L  +     ++             ++ +
Sbjct: 214 PGKRILFLADRNVLIDQTMVNDFRPFSGKMAKLSTQSKTIERADGSSVELPLGLDRKRRI 273

Query: 163 GIDSKHYTITCRTYSEERPDT--FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220
               + Y    +  +    +   F          +  DE        + +        + 
Sbjct: 274 DPSYEIYLGLYQAITGPAEEDKIFREFSQDFFDLIIIDECHRGSAAEDSAWREILDHFSG 333

Query: 221 NRFWIMTSNTRRLN 234
                MT+  +   
Sbjct: 334 AVQIGMTATPKETE 347


>gi|163733653|ref|ZP_02141095.1| ATP-dependent DNA helicase, UvrD/REP family domain [Roseobacter
           litoralis Och 149]
 gi|161392764|gb|EDQ17091.1| ATP-dependent DNA helicase, UvrD/REP family domain [Roseobacter
           litoralis Och 149]
          Length = 908

 Score = 44.9 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 46/399 (11%), Positives = 100/399 (25%), Gaps = 58/399 (14%)

Query: 10  KLEQELHEMLMHAECVLSF-----KNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64
             E  L  M+        +     + F+ R+ P    G+ ++  +    W    +E +  
Sbjct: 76  YAETGLKSMVDATRLSEDYFLLNKEQFMKRWMP--GMGREIKRQTTSRSW-KTIVEDLKN 132

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI-STRPGMS-IICIANSETQLKN 122
               ++   +       + AG G GKT +    + +L+   R     I+ +A +      
Sbjct: 133 KVQQDIVTDDRDRTNVLVLAGPGSGKTRVLVHRIAYLLRMKREDSRGILVLAYNRHAAAE 192

Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW-----YAELLEQSMGIDSKHYTITCRTYS 177
                 +               SL++   G       A+  +    I      +     S
Sbjct: 193 IRVRLRALVGDDAAGVTISTCHSLAMRLVGASFSGIDADTTDFDNIITEAVGQLNGNGLS 252

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG----FFTELNPNRFWIMTSNTRRL 233
               +            +  DE           I         + +         +  + 
Sbjct: 253 RSEAEAQRDSLIEGYRWILVDEYQDIGPEEYALISAVAGRSLEDADLKLSLFAVGDDDQN 312

Query: 234 ----NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
               NG   D   +  ED+K             +   E   +      D  +++   +  
Sbjct: 313 IYAFNGASIDFIRMFEEDYKARPAFLIENYRSTANIIEAANAVISKAPDRMKVDHEIRIN 372

Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGD------------------- 330
           +            +              + +  D+   GGD                   
Sbjct: 373 EARSLGVPGGRLADA------DPVAQGRVQL-LDV--PGGDTHQAIAAVDEMIRLSHLDP 423

Query: 331 -----KTVVVFRRGNIIEHIFDWS--AKLIQETNQEGCP 362
                +T ++ R    +  +  ++    L  E   E  P
Sbjct: 424 NWNWARTAIISRDWKRLGPVRTYAETKGLNVEMANEDLP 462


>gi|159482689|ref|XP_001699400.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158272851|gb|EDO98646.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 231

 Score = 44.9 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/201 (9%), Positives = 57/201 (28%), Gaps = 7/201 (3%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK-WLSMLPH 137
              +    G+GKT + A ++L      P   ++  A ++  ++    A + K  +     
Sbjct: 32  NTLVCLPTGLGKTLIAAVVILNFYRWFPDGKLVFTAPTKPLVEQQHRACLEKTHIPKGET 91

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
                 ++     +G  A    + +    + +  T +    +  +          + +  
Sbjct: 92  TVLTAGRAKRGDEAGSAAAESRRELWSSRRVFFCTPQILDNDIANGVCP--RDKLVLIVV 149

Query: 198 DEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255
           DE            ++          R   +++   +      ++         R +  +
Sbjct: 150 DECHRVTGNAAPVAALTELRRTGLAVRVVGLSATPGKNAEAVQEVVRHL--GVSRVEFRS 207

Query: 256 RTVEGIDSGFHEGIISRYGLD 276
                +    H   +   G +
Sbjct: 208 DEDPDVSPHVHNKQVRLGGWE 228


>gi|302412431|ref|XP_003004048.1| ATP-dependent DNA helicase MER3 [Verticillium albo-atrum VaMs.102]
 gi|261356624|gb|EEY19052.1| ATP-dependent DNA helicase MER3 [Verticillium albo-atrum VaMs.102]
          Length = 709

 Score = 44.9 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 36/154 (23%), Gaps = 22/154 (14%)

Query: 58  FMEAVDVHCHSNVNNSNPTIF--------KCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
            +E +        N     IF           + +  G GKT      M W    RPG  
Sbjct: 245 ALEEIYAQRFQYFNPMQTQIFHTLYNTPANVLLGSPTGSGKTVAAELAMWWAFKERPGSK 304

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           ++ IA  +  ++      V  W + L      ++  L                       
Sbjct: 305 VVYIAPMKALVRER----VKDWGARLAKPLGLKLVEL--------TGDNTPDTRTIKDAD 352

Query: 170 TITCRTYSEERPDTFVGPHN--THGMAVFNDEAS 201
            I       +                 V  DE  
Sbjct: 353 VIITTPEKWDGISRSWQTRGYVRQVSLVIIDEIH 386


>gi|281600560|gb|ADA73544.1| putative terminase of prophage CP-933C [Shigella flexneri 2002017]
          Length = 553

 Score = 44.9 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 33/261 (12%), Positives = 55/261 (21%), Gaps = 27/261 (10%)

Query: 23  ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82
           E V  F  F        +KG       +   WQ      +             T     +
Sbjct: 43  EVVERFIAFSRV--CPHVKGPMRGRPIELEPWQQFAFACILGFKVKATGRRKYTSAFIEV 100

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
              R   K+T  A +  W +    G   I  A         ++    +            
Sbjct: 101 --PRKNAKSTTAAILANWFLIMENGQQDIYTAAVSRDQARIVFDNARQMC--------LL 150

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
            + L    +    +++        K       T     P                DE   
Sbjct: 151 SRPLRRRVNIQAHKVIHPKSNSLLKPLAAKAATIEGTNPS-----------LSIVDEYHL 199

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
            PD    S L       P       + +                D+    +D   V    
Sbjct: 200 HPDNGVYSALELGMGARPEGLLFAITTSGSNVVSACKQHY----DYCCQILDGEEVNDSI 255

Query: 263 SGFHEGIISRYGLDSDVARIE 283
                 +     +D     I+
Sbjct: 256 FVLIYELDDENEVDDPAMWIK 276


>gi|33770510|ref|NP_892047.1| terminase large subunit [Yersinia phage PY54]
 gi|33636093|emb|CAD91762.1| terminase large subunit [Yersinia phage PY54]
          Length = 577

 Score = 44.9 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 35/258 (13%), Positives = 67/258 (25%), Gaps = 37/258 (14%)

Query: 12  EQELHEMLMHAECVLSFKNF----------VMRFFPWGIKGKPLEHFSQPHRWQLEFMEA 61
           ++ L ++            F           ++  P        +       WQL    +
Sbjct: 33  QRHLDDLKNSVNDKNYPYRFDRDLAERACCFVQLLPHSSGDLKGQKLKA-EPWQLFIFSS 91

Query: 62  VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG--MSIICIANSETQ 119
           +                +  I  GR  GK+   A + +++          + C A    Q
Sbjct: 92  IFGWVTKKGKKR--RFKETYIRVGRKNGKSFFAAGIGMYMFCADGENAAEVYCGATKMAQ 149

Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
            K   +   S+   +LP           L      +   E+    D           S  
Sbjct: 150 AKKV-FTPASQMAKLLPD----------LRSRFNVSVWAEKLTREDG----------SVF 188

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTP-DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
            P                DE    P DI+  ++       +     I+T+  + +    Y
Sbjct: 189 APVVGNPGDGDSPSCAIIDEYHEHPTDILYSTMTTGMGARSQPLTLIITTAGKDIESPCY 248

Query: 239 DIFNIPLEDWKRYQIDTR 256
           D  N   +   +   + R
Sbjct: 249 DKDNEVKQCLDKMLPNER 266


>gi|293392001|ref|ZP_06636335.1| crispr-associated helicase Cas3 domain protein [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952535|gb|EFE02654.1| crispr-associated helicase Cas3 domain protein [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 567

 Score = 44.9 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 60/228 (26%), Gaps = 20/228 (8%)

Query: 36  FPWGIKGKPLEHFSQPHRWQL-----EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
           F  G + +P +   Q    Q           +  H  +  +   P +F   +    G GK
Sbjct: 36  FIDGFRRRPTQSAQQTEAEQRNVALNRLRSEILDHAVAQASEP-PGLFTLTV--PTGGGK 92

Query: 91  TTLNAWMMLWLISTRPGMSIICIANSETQLKNT---LWAEVSKWLSMLPHRHWFEMQSLS 147
           T  +    L          +I +    + ++           +W       H        
Sbjct: 93  TFTSMAFALEHAKRYGMRRVIYVIPFTSIIEQNAAEFRKAFGEWGEAAVLEHHSTFDDGK 152

Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSE----ERPDTFVGPHNTHGMAVFNDEASGT 203
           L       +L   S   D      T   + E    +R       HN  G  +  DEA   
Sbjct: 153 LQNIDTKDKLRRASENWDVPVVVSTAVQFFESLFADRSSRCRKLHNIAGSVIILDEAQML 212

Query: 204 PDI----INKSILGFFTELNPNRFWIMTSNTR-RLNGWFYDIFNIPLE 246
           P      I ++I         +      +    +    FY  F    E
Sbjct: 213 PPALLLPIMQAIKELAQNYRCSVVMCTATQPAVQAENGFYRGFENVRE 260


>gi|240103736|ref|YP_002960045.1| reverse gyrase [Thermococcus gammatolerans EJ3]
 gi|239911290|gb|ACS34181.1| Reverse gyrase (rgy) [Thermococcus gammatolerans EJ3]
          Length = 1226

 Score = 44.9 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 65/228 (28%), Gaps = 17/228 (7%)

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126
                         +I A  G+GK+T  A+M ++  +   G     +  +   +  T+  
Sbjct: 89  QRTWVKRLLKGRSFSIIAPTGMGKSTFGAFMSVYYAT--KGKKSYIVVPTTPLVIQTI-- 144

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
              + +  +  R   +++    H +    E  E    I+   Y I   +      +    
Sbjct: 145 ---RKVQAIIERTGLDVKLAYYHGNLRKKEKEEMLAKIEGGDYDILITSAQWLARNFDEK 201

Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246
               H   +F D                    N +R  ++   T  + G  ++I  +  +
Sbjct: 202 LKGRHFDFIFVD----------DVDAFLKASKNIDRSLLLLGFTEEIIGKAWEIIRLKKQ 251

Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294
             +    ++          +E I        +  R   +G        
Sbjct: 252 MARYLNGNSEDKNDRLKELNEAIEKLQREIEEFKRKNDIGIMIIASAT 299


>gi|85105138|ref|XP_961895.1| activating signal cointegrator 1 complex subunit 3 [Neurospora crassa
            OR74A]
 gi|28923479|gb|EAA32659.1| activating signal cointegrator 1 complex subunit 3 [Neurospora crassa
            OR74A]
          Length = 2066

 Score = 44.9 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 36/153 (23%), Gaps = 22/153 (14%)

Query: 59   MEAVDVHCHSNVNNSNPTIF--------KCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
            +E +        N     +F           + +  G GKT      M W    RPG  +
Sbjct: 1166 LEEIYAQRFQYFNPMQTQVFHTLYHTPANVLLGSPTGSGKTVACELAMWWAFRERPGSKV 1225

Query: 111  ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
            + IA  +  ++      V  W + L      ++  L                        
Sbjct: 1226 VYIAPMKALVRER----VKDWGARLAKPLGLKLVEL--------TGDNTPDTRTIQDADI 1273

Query: 171  ITCRTYSEERPDTFVGPHN--THGMAVFNDEAS 201
            I       +                 V  DE  
Sbjct: 1274 IITTPEKWDGISRSWQTRGYVRKVSLVIIDEIH 1306


>gi|300726698|ref|ZP_07060130.1| helicase domain protein [Prevotella bryantii B14]
 gi|299776007|gb|EFI72585.1| helicase domain protein [Prevotella bryantii B14]
          Length = 901

 Score = 44.9 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 76/270 (28%), Gaps = 26/270 (9%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q    +  +      +        +  I+ G G+GKT      +  +I    G  I+  A
Sbjct: 69  QNGAFDVAEYQMTPTLKAFELPRPRLLIADGVGLGKTIEVGIFLSEMIRRGRGKRILVCA 128

Query: 115 NSE--TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
                 Q +  +W   +  L  L      ++Q+        +    +  + ID+      
Sbjct: 129 LKSILAQFQEEIWNRFAIPLVRLDSVGVAKIQNEIPLNKNPFDYYDKTIISIDTLKNNGR 188

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE--LNPNRFWIMTS-N 229
            R + E+           H   +  DE     +    S+ G   +         I+TS  
Sbjct: 189 FRAWLEKT----------HWDIIVIDECHKVANE--DSLRGDLAQFLAQKCDSMILTSAT 236

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
               +   +      LE     +    T E +   +     +            I  QF 
Sbjct: 237 PHNGSAESFANLMRMLEPISIPRNGEYTKEDVMPYYVRRFKNDISD------ARIRSQF- 289

Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319
             +    IP +        E +   +A  I
Sbjct: 290 --QERKVIPIDVNLTPQEEEILSMQHAKFI 317


>gi|253582257|ref|ZP_04859480.1| PhoH family protein [Fusobacterium varium ATCC 27725]
 gi|251835796|gb|EES64334.1| PhoH family protein [Fusobacterium varium ATCC 27725]
          Length = 435

 Score = 44.9 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 51/194 (26%), Gaps = 19/194 (9%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             +  G G GKT L     L L+  R     + IA             +      L +  
Sbjct: 245 VTLVGGAGTGKTLLAIATGLELVVERKKYKKLLIA-----------RPIIPMGKDLGYLP 293

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE---ERPDTFVGPHNTHG--MA 194
             E + L       +  +   S   D K               + +              
Sbjct: 294 GSEKEKLKPWMQPIFDNIDFLSEAKDDKTGEKVVEGLEAMGILKIEALTYIRGRSIPRGL 353

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254
           +  DEA     +  K+I    T    N   I T + ++++  + D     L        +
Sbjct: 354 IIIDEAQNLTPLEIKTI---VTRAGENTKIIFTGDPQQIDNPYLDSNTNGLTYLADRLKN 410

Query: 255 TRTVEGIDSGFHEG 268
              V  I     E 
Sbjct: 411 EEIVGHITLKKGER 424


>gi|145603324|ref|XP_369340.2| hypothetical protein MGG_06124 [Magnaporthe oryzae 70-15]
 gi|145011578|gb|EDJ96234.1| hypothetical protein MGG_06124 [Magnaporthe oryzae 70-15]
          Length = 1998

 Score = 44.9 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/126 (12%), Positives = 28/126 (22%), Gaps = 16/126 (12%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               + +  G GKT      M W    RPG  ++ IA  +  ++  +             +
Sbjct: 1171 NVLLGSPTGSGKTVAAELAMWWAFRERPGSKVVYIAPMKALVRERV-------------K 1217

Query: 139  HWFEMQSLSLHPSGWY-AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN--THGMAV 195
             W    +  +                       I       +                 V
Sbjct: 1218 DWGARLAQPMGLKLVELTGDNTPDTRTIKDADVIITTPEKWDGISRSWQTRGYVRQVSLV 1277

Query: 196  FNDEAS 201
              DE  
Sbjct: 1278 IIDEIH 1283


>gi|316979455|gb|EFV62248.1| DNA excision repair protein haywire [Trichinella spiralis]
          Length = 837

 Score = 44.9 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 17/157 (10%), Positives = 35/157 (22%), Gaps = 16/157 (10%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q + +  +  +  +             +    G GK+     ++            +
Sbjct: 328 RPYQEKSLRKMFGNSRARSG--------VIVLPC-GAGKS-----LVGVTACCTVNKRCL 373

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
           C+ NS   ++   W    K  S             S              + I +     
Sbjct: 374 CLCNSNVSVQQ--WRNQFKMWSTADDSKIVRFTRESGDHVPSGNRANAPVICISTYSMIA 431

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208
                S E               +  DE    P  + 
Sbjct: 432 YQGRRSFEAEQMMQYIRQQEWGLILLDEVHTIPAKMF 468


>gi|152985800|ref|YP_001350388.1| hypothetical protein PSPA7_5052 [Pseudomonas aeruginosa PA7]
 gi|152986886|ref|YP_001346099.1| hypothetical protein PSPA7_0704 [Pseudomonas aeruginosa PA7]
 gi|150960958|gb|ABR82983.1| conserved hypothetical protein, putative [Pseudomonas aeruginosa
           PA7]
 gi|150962044|gb|ABR84069.1| conserved hypothetical protein, putative [Pseudomonas aeruginosa
           PA7]
          Length = 682

 Score = 44.9 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 33/295 (11%), Positives = 61/295 (20%), Gaps = 28/295 (9%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA--NSETQLKNTLWAEVSKWLS-MLPHR 138
           I   R IG T   A              I   A        ++ + A  ++W    L   
Sbjct: 174 ILKSRQIGLTYYFAAEAFMDAVLTGDNQIFLSASRAQSEVFRSYIVAFAAQWFDIELSGN 233

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY----SEERPDTFVGPHNTHGMA 194
                +         +      +      H  I    +     + +        +     
Sbjct: 234 PIILSKDGKPWAELRFLSTNSNTAQSYHGHVYIDEVFWIPNFQKLQTVASAMASHAKWRL 293

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254
            +    S           G     +                  +     P   W++    
Sbjct: 294 TYFSTPSAVTHQAYPYWTGEEFRNSKRGKKA---GPWPSEAQIHAGALCPDGQWRKVITI 350

Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM-----SRE 309
              + G  + F    +     D +      + +F       F     +E          +
Sbjct: 351 QDAIAGGCNLFDLERLQLEY-DEERFEQLFMCKFIDSTQAAF-ALADLERCYSDLGLWTD 408

Query: 310 AIDDL-----YAPLIMGCDIAGEGGDKTVVVFRRGN------IIEHIFDWSAKLI 353
              D        P+ +G D +    D T VV            I     W     
Sbjct: 409 YDPDSPRPFDNRPVWLGYDPSRTRDDATCVVVAPPLEPGGKFRILEKHSWRGTSF 463


>gi|269986940|gb|EEZ93216.1| type III restriction protein res subunit [Candidatus Parvarchaeum
           acidiphilum ARMAN-4]
          Length = 508

 Score = 44.6 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/177 (10%), Positives = 52/177 (29%), Gaps = 20/177 (11%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
           F E ++   +              +    G+GKT ++A +  + +   P   ++ +A ++
Sbjct: 4   FKEEIENREYQTKIFETAKTGNTLVVLPTGLGKTIISAMLANYRLEKYPSSKVLFLAPTK 63

Query: 118 TQLKN--TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
                    ++ +      +            ++          Q++  D +   I    
Sbjct: 64  PLANQHYRTFSSLLSLKQGMASGSVSSSSRGKIYEDAQIIFATPQTIENDMEKKVIDFSD 123

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNP-NRFWIMTSNT 230
           +S                 +  DEA     +     I   ++E +       +T++ 
Sbjct: 124 FS----------------LLIVDEAHHAIGNYSYVKIAKLYSEQSFHPLLLGLTASP 164


>gi|195501254|ref|XP_002097724.1| GE24317 [Drosophila yakuba]
 gi|194183825|gb|EDW97436.1| GE24317 [Drosophila yakuba]
          Length = 2183

 Score = 44.6 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 20/175 (11%), Positives = 42/175 (24%), Gaps = 20/175 (11%)

Query: 45   LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            L  F+  +  Q +    +    +              + A  G GKT +    +   ++ 
Sbjct: 1331 LYKFTHFNPIQTQIFHCLYHTDN-----------NVLLGAPTGSGKTIVAEIAIFRALNQ 1379

Query: 105  RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
             P   ++ IA  +  +K  +     ++          E+            E        
Sbjct: 1380 NPKCKVVYIAPLKALVKERISDWEQRFQRSSLGLKVVELTGDVTPDIQAIRESQLIVTTP 1439

Query: 165  DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
            +            E            H   +  DE     +     I    +  N
Sbjct: 1440 EKWDGISRSWQTREYV---------QHVSLIVIDEIHLLGEDRGPVIEVIVSRTN 1485


>gi|75812587|ref|YP_320206.1| Type III restriction enzyme, res subunit [Anabaena variabilis ATCC
           29413]
 gi|75705343|gb|ABA25017.1| Type III restriction enzyme, res subunit [Anabaena variabilis ATCC
           29413]
          Length = 539

 Score = 44.6 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 45/168 (26%), Gaps = 8/168 (4%)

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126
               N       +  +    G GKT     ++   + +     ++ +A S  +L      
Sbjct: 144 RKVKNYFKQEPRRVLLHMPTGSGKTRTAMNIIADHLRSVEPTIVVWLAYS-EELCEQAAT 202

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
           E  K    L  R       +SL+      E+    +        ++      ++   F+ 
Sbjct: 203 EFQKAWQCLGDR------QVSLYRFWGEHEIDVDKLEDGIVVAGLSKVYNRTKQSIQFIN 256

Query: 187 PHNTHGMAVFNDEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRL 233
                   V  DEA     +     +              +T+   R 
Sbjct: 257 RLGKVSSLVIIDEAHQAIAETYKLVLDALVVPYENTALLGLTATPGRT 304


>gi|210621036|ref|ZP_03292421.1| hypothetical protein CLOHIR_00364 [Clostridium hiranonis DSM 13275]
 gi|210155020|gb|EEA86026.1| hypothetical protein CLOHIR_00364 [Clostridium hiranonis DSM 13275]
          Length = 561

 Score = 44.6 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 54/180 (30%), Gaps = 24/180 (13%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
             WQ   + A+       ++ +        I A R  GK+TL A + L+L+      G  
Sbjct: 80  ELWQKALVAAMF-GIVHKIDGTRKYREVILIVA-RKNGKSTLAAAIGLYLMIADGEGGAE 137

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I  +A+ + Q K  +W E  K +   P         L        AE+  +         
Sbjct: 138 IYAVASKKDQAK-IIWLESKKMVKKSPV--------LLKRIKPLVAEMTSEVNES----- 183

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
            I      +      +  H         DE     D     ++   T         +T+ 
Sbjct: 184 -IFKPLGRDSDSLDGLNVHG-----ALLDEIHAWKDKNLYDVIVDGTSSREEPMIFITTT 237


>gi|295394538|ref|ZP_06804760.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294972589|gb|EFG48442.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 467

 Score = 44.6 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/183 (10%), Positives = 39/183 (21%), Gaps = 15/183 (8%)

Query: 43  KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102
            P      P   +      +D            T     +    G GKTT+    +    
Sbjct: 245 TPEREPEHPDVTRTAQAARLDAGQTVAAAAVASTDPLVIVEGAAGSGKTTMLRTAITVGA 304

Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
                  ++       Q+        +  ++ L H H +      +       +    + 
Sbjct: 305 EHGRPSRVVASTLRAAQVAEEELGVPATSVAALVHAHGWRWNDDGVWTRLAPGDTDPTTG 364

Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222
              +                          + V  DEA         ++L    E     
Sbjct: 365 STYNGP---------------PENARLDRRVRVIVDEAGMLDQDTTHALLTITQEAGATV 409

Query: 223 FWI 225
             I
Sbjct: 410 ALI 412


>gi|291546806|emb|CBL19914.1| HD domain./DEAD/DEAH box helicase [Ruminococcus sp. SR1/5]
          Length = 401

 Score = 44.6 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 21/204 (10%), Positives = 51/204 (25%), Gaps = 18/204 (8%)

Query: 33  MRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTT 92
                W +K    E  +       E ++A   +           +F+  +    G GKT 
Sbjct: 202 KYITEW-LKNTETESVNGRRT---EILKACLENGEREKG-----LFRLTV--PTGGGKTV 250

Query: 93  LNAWMMLWLISTRPGMSIICIANSETQLKN--TLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
            +    L          II +    + ++    ++  +    ++L +    + +  +   
Sbjct: 251 ASLAFALRHAVKHHMKRIIYVIPYTSIIEQNAAVFRRILGDENVLENHCNIDYEE-AEEL 309

Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI---- 206
                        +          +    +       HN     +  DEA   P+     
Sbjct: 310 KPMQLASENWDKPVVVTTNVQFFESLFSNKSSKCRKLHNMANSVIIFDEAQMLPNDYLKP 369

Query: 207 INKSILGFFTELNPNRFWIMTSNT 230
              +I         +      +  
Sbjct: 370 CLTAIEELVINYKVSAVLCTATQP 393


>gi|226288385|gb|EEH43897.1| activating signal cointegrator 1 complex subunit 3 [Paracoccidioides
            brasiliensis Pb18]
          Length = 2011

 Score = 44.6 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 35/125 (28%), Gaps = 14/125 (11%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               + +  G GKT      M W    RPG  ++ IA  +  ++      V  W   L   
Sbjct: 1158 NVLLGSPTGSGKTVAAELAMWWAFRERPGSKVVYIAPMKALVRER----VHDWKRRLTVP 1213

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN--THGMAVF 196
               ++  L+   +     + +  + I +            +                 V 
Sbjct: 1214 MGLKLVELTGDNTPDTRTIRDADIIITTPEKW--------DGISRSWQTRGYVRQVSLVI 1265

Query: 197  NDEAS 201
             DE  
Sbjct: 1266 IDEIH 1270


>gi|295672069|ref|XP_002796581.1| activating signal cointegrator 1 complex subunit 3 [Paracoccidioides
            brasiliensis Pb01]
 gi|226283561|gb|EEH39127.1| activating signal cointegrator 1 complex subunit 3 [Paracoccidioides
            brasiliensis Pb01]
          Length = 2012

 Score = 44.6 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 35/125 (28%), Gaps = 14/125 (11%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               + +  G GKT      M W    RPG  ++ IA  +  ++      V  W   L   
Sbjct: 1158 NVLLGSPTGSGKTVAAELAMWWAFRERPGSKVVYIAPMKALVRER----VHDWKRRLTVP 1213

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN--THGMAVF 196
               ++  L+   +     + +  + I +            +                 V 
Sbjct: 1214 MGLKLVELTGDNTPDTRTIRDADIIITTPEKW--------DGISRSWQTRGYVRQVSLVI 1265

Query: 197  NDEAS 201
             DE  
Sbjct: 1266 IDEIH 1270


>gi|309806027|ref|ZP_07700053.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus
           iners LactinV 03V1-b]
 gi|308167630|gb|EFO69783.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus
           iners LactinV 03V1-b]
          Length = 460

 Score = 44.6 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 56/231 (24%), Gaps = 23/231 (9%)

Query: 40  IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99
            KG    +F +P   Q + +  +  H                + A  G GKT       L
Sbjct: 17  KKGLEKINFLKPTPVQQQVLPLLLAHQ------------NVVVQAVTGSGKTHAY----L 60

Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159
             I       ++C     T     L +++ K    L  R   E+     +  G      +
Sbjct: 61  IPIINDLDPELLCTQAVITAPSRELASQLYKVARQL--RDAAELNISIEYLGGGNDRTRQ 118

Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG-TPDIINKSILGFFTEL 218
                ++    I                          DEA           +    T L
Sbjct: 119 LEKASNNAPQLIIATPGRLHDFAIKKIIKLDQVSTFIIDEADMTLDMGFLNQMDDIMTRL 178

Query: 219 NPNRFWIMTSN--TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267
             N      S     +L  +       P  ++      +     + +   +
Sbjct: 179 GSNVTIGAFSATIPVKLEQFLNKYMEHP--EFVVIDNPSVISPTVANDLID 227


>gi|294636481|ref|ZP_06714853.1| putative terminase large subunit of bacteriophage [Edwardsiella
           tarda ATCC 23685]
 gi|291090261|gb|EFE22822.1| putative terminase large subunit of bacteriophage [Edwardsiella
           tarda ATCC 23685]
          Length = 553

 Score = 44.6 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 50/240 (20%), Gaps = 37/240 (15%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
              Q +    +                K  I   R +G +T     +L        +   
Sbjct: 40  RPAQRQLFREMHE--------------KNLILKARQLGFSTAIDLYLLDQALFSKNVKCG 85

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +A  +        AE+ +    +P  H     +   H    +       +        +
Sbjct: 86  IVAQDKQAA-----AEIFRTKIEVPFDHLPAWLAGCFHAVKRHGGASGGYIEFAHGSNIM 140

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
              ++            +           +  P    +   G    +       + S   
Sbjct: 141 VATSFRSGTVQRLHISEHGKI-------CAKYPAKAKEVRTGTLNAVADGSIVFIESTAE 193

Query: 232 RLNGWFYDIFNIPLE-----------DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280
            + G FY +     E           D+K +           +      +          
Sbjct: 194 GVGGDFYTMSQRAQEMAQSGLALSPQDYKFHFYAWWQDPKYTAQLPPEGLRLSRHHQAYF 253


>gi|238581544|ref|XP_002389644.1| hypothetical protein MPER_11197 [Moniliophthora perniciosa FA553]
 gi|215452133|gb|EEB90574.1| hypothetical protein MPER_11197 [Moniliophthora perniciosa FA553]
          Length = 633

 Score = 44.6 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 36/145 (24%), Gaps = 8/145 (5%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE-------VSKWLSMLPHRH 139
           G GKT      +L L+S  P   I+  A S +                + +  +    R 
Sbjct: 480 GTGKTVTAVEAILQLLSANPNARILACAPSNSAADLIAMRLRSLGESGLFRAYAPSRDRE 539

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
               + L               +    +   +     S         P   +      DE
Sbjct: 540 QVPHELLPFTYQNATGHFSVPLLSRMKRFRAVVTTCVSANIIAGIGIPRGHYTHIF-VDE 598

Query: 200 ASGTPDIINKSILGFFTELNPNRFW 224
           A    +      +    ++N N   
Sbjct: 599 AGQATEPEVMIAIKTMADMNTNVVL 623


>gi|83310862|ref|YP_421126.1| Mu-like prophage FluMu protein gp28 [Magnetospirillum magneticum
           AMB-1]
 gi|82945703|dbj|BAE50567.1| Mu-like prophage FluMu protein gp28 [Magnetospirillum magneticum
           AMB-1]
          Length = 545

 Score = 44.6 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 33/272 (12%), Positives = 63/272 (23%), Gaps = 49/272 (18%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW----AEVSKWLSMLPHRH 139
            GR  G T   AW            ++I  A       +  +     E  +         
Sbjct: 51  KGRRTGFTWAEAW----------DDTLIAAAAKSAGGDDIWYIGDTKEKGREFVATCAGF 100

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM------ 193
              +    L    +  E +E     ++K   I     +           +          
Sbjct: 101 ASRLAGELLDIEEFVFEDVEVDERGEAKTRQIAAFRITFASGHRISALSSRPANIRGLQG 160

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK---R 250
            V  DEA+     + K I      L       + S        +  +        +    
Sbjct: 161 IVVIDEAAF-HQDVGKVIEACLALLIWGGKIRIISTHNGNTNAYNTLIKEIRTGIQEASL 219

Query: 251 YQIDTRT------------------VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292
           ++                            + ++  I   YG  ++  R E+    P++ 
Sbjct: 220 HRATFDDAVAGGLYERMCAVKNRAMSPQDKAAWYSKIRRSYGSRTEAMREELDAV-PREG 278

Query: 293 VNNFIPHNYIEEAMS------REAIDDLYAPL 318
               +    IE A        R    +    L
Sbjct: 279 DGTMLALALIEAAQHQDYRVARWVPPEPAGSL 310


>gi|332519121|ref|ZP_08395588.1| type III restriction protein res subunit [Lacinutrix algicola
           5H-3-7-4]
 gi|332044969|gb|EGI81162.1| type III restriction protein res subunit [Lacinutrix algicola
           5H-3-7-4]
          Length = 1044

 Score = 44.6 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 74/232 (31%), Gaps = 30/232 (12%)

Query: 4   LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63
             S  +  + EL +   H E + S         P+      L     P  +Q E +E ++
Sbjct: 273 FDSYWKSDDFELFDDSKHKEKLQSALKQSKFSKPY-ENATALFDIK-PFPYQKEVLEKLE 330

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
                 V  +    F+  + A  G GKT ++A+             ++ +A+     K  
Sbjct: 331 ------VERTVHKRFRNLVVAATGTGKTVISAFDYKRFKQNNKSAKLLFLAHR----KEI 380

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
           +   +S +  +L + +  E+    + P               +    +     S +    
Sbjct: 381 IQKSLSTFQGVLRNNNIGELWVDGMTP---------------NNFEFVFASVQSVKNKFK 425

Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
                  +   +  DE         + I+ +F    P     +T+   R++G
Sbjct: 426 EYNLTPDYYDYIIIDECHHQTANSYREIINYF---KPKVLLGLTATPERMDG 474


>gi|149192208|ref|ZP_01870425.1| ATP-dependent RNA helicase SrmB [Vibrio shilonii AK1]
 gi|148833966|gb|EDL50986.1| ATP-dependent RNA helicase SrmB [Vibrio shilonii AK1]
          Length = 407

 Score = 44.6 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 42/318 (13%), Positives = 79/318 (24%), Gaps = 50/318 (15%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           +      +S+P   Q + +                       SA  G GKT   A   + 
Sbjct: 16  EAIEEMGYSRPTEIQAQAIPQALD------------AKDILASAPTGTGKTASFAIPAIQ 63

Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
            +   P        I+ +  +                     +   +   L +       
Sbjct: 64  YLLDFPRKKAGPARILVLTPTRELAMQVAEH----------TKALAKHTRLKVATITGGV 113

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
                +  +      +                       +  DEA    D+     +   
Sbjct: 114 TYDTHADTLAQTQDIVVATPGRLMEYIESERFDCRAIEWLVLDEADRMLDLGFGPTVDRL 173

Query: 216 TELNPNRFWIMTSNTR----RLNGWFYDIFNIP---------LEDWKRYQIDTR-TVEGI 261
           +     R   +  +       + G+  D+   P          E  K  Q   R      
Sbjct: 174 SAECRWRKQTLLFSATLEGRGVEGFTADLLKAPAEISAEPSTRERKKITQWYHRADNAEH 233

Query: 262 DSGFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AID 312
                + I++     + V     E LG+  QQ  +  IP ++I  E    R         
Sbjct: 234 KLALLKHILTEQAQRTIVFLKTRERLGELRQQLDSAQIPCSWIQGEMPQDRRNNAISRFR 293

Query: 313 DLYAPLIMGCDIAGEGGD 330
           D    +++  D+A  G D
Sbjct: 294 DGSVNILLATDVAARGID 311


>gi|324505126|gb|ADY42208.1| TFIIH basal transcription factor complex helicase XPB subunit
           [Ascaris suum]
          Length = 798

 Score = 44.6 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/169 (10%), Positives = 44/169 (26%), Gaps = 16/169 (9%)

Query: 40  IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99
             G  L+  +    +Q + +  +  +  +             +    G GKT     ++ 
Sbjct: 315 NLGIDLKPSTTLRPYQEKSLRKMFGNSRARSG--------VIVLPC-GAGKT-----LVG 360

Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159
              +T      + +A S   ++   W    K  S +           +  P        +
Sbjct: 361 VTAATTVNKRCLVLATSNVSVEQ--WRAQFKLWSTIRDDQLTRFTREARDPVPSGPNANK 418

Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208
             + I +          +    +      +     +  DE    P  + 
Sbjct: 419 PVVCISTYSMVAYTGKRTYAAEEAMKYIESLEWGLLLLDEVHTIPAKMF 467


>gi|284801430|ref|YP_003413295.1| type III restriction enzyme [Listeria monocytogenes 08-5578]
 gi|284994572|ref|YP_003416340.1| type III restriction enzyme [Listeria monocytogenes 08-5923]
 gi|284056992|gb|ADB67933.1| type III restriction enzyme [Listeria monocytogenes 08-5578]
 gi|284060039|gb|ADB70978.1| type III restriction enzyme [Listeria monocytogenes 08-5923]
          Length = 925

 Score = 44.6 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 50/184 (27%), Gaps = 18/184 (9%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q E M            +    +F  A     G GKT L A ++L+L       + +
Sbjct: 49  RDYQDEAMRNYHYTQTQINPSPQHVLFNMA----TGSGKTDLMAGLILYLYQEHKYQNFL 104

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
              N+ + L  T    V++       +   E++   ++          +         + 
Sbjct: 105 FTVNTNSVLMKTKDNLVNENNDKYLFQEKIEIEGQRIYIRQVERFPCVRQNNTIYIKLSS 164

Query: 172 TCRTYSEERPDTFVGP----HNTHGMAVFNDEASGTP----------DIINKSILGFFTE 217
             +   +             +  H + V  DEA              +    +I      
Sbjct: 165 VQKLSDDLFVLKENTMGLSDYENHPVVVLADEAHHYSASTKSEKEAENTWESAINKILRA 224

Query: 218 LNPN 221
            +  
Sbjct: 225 RDNE 228


>gi|197261559|ref|YP_002154374.1| terminase large subunit [Bacillus phage IEBH]
 gi|197092431|gb|ACH42306.1| terminase large subunit [Bacillus phage IEBH]
          Length = 432

 Score = 44.6 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 30/255 (11%), Positives = 66/255 (25%), Gaps = 27/255 (10%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
                GR   K+++ +  ++         +++C+      L  +++ ++   + ML    
Sbjct: 26  IVAKGGRSSMKSSVISMKLVTDFLEDEQGNVVCLRKVGKYLSTSIYEQIKWAIYMLGVES 85

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
            F      L              G D      + +                + MA++ +E
Sbjct: 86  EFYFGKSPLIIRHKKTNTAFYFYGCDDPLKLKSAKIAKG------------YVMALWFEE 133

Query: 200 AS-GTPDIINKSILGFFTEL---NPNRFWIMTSNTRR-LNGWFYDIFNIPL--EDWKRYQ 252
           A+          +   F              + N  R    W  +  +     ED+  + 
Sbjct: 134 AAEFAGVEDIDIVEDTFIRQEIEGKEVKVYFSYNPPRNPYSWINEWLDSKAGDEDYFIHH 193

Query: 253 IDTRT--VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
                     +       I      D D  R    G+        +           +E 
Sbjct: 194 STYMDDKKGFLSQQMIRKIEKYKIHDLDYWRWMYGGEVIGLGDMVY------NMNHIQEI 247

Query: 311 IDDLYAPLIMGCDIA 325
            +  +   I+  D A
Sbjct: 248 DELPHDDDIILIDTA 262


>gi|194745250|ref|XP_001955101.1| GF18603 [Drosophila ananassae]
 gi|190628138|gb|EDV43662.1| GF18603 [Drosophila ananassae]
          Length = 1475

 Score = 44.6 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 24/197 (12%), Positives = 49/197 (24%), Gaps = 11/197 (5%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              +    G+GKT + A +M       P   I+ +A +   +      +++    ++P  
Sbjct: 77  NTLVVLPTGLGKTFIAAVVMYNFYRWYPQGKIVFMAPTRPLVAQ----QINASQKIMPFA 132

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               +Q          A+L E           +          +       +    V  D
Sbjct: 133 AADTVQLTGQLARPKRAQLWESKRVFFVTPQVVHS---DMLEAEGGATFPFSSVKLVVVD 189

Query: 199 EASGTPDIIN--KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256
           EA          +            R   +++   R       +           Q+   
Sbjct: 190 EAHRAKGRYAYTQVADSMMAHNRNFRMLALSATPGRTMDDVATVCQNL--FISNLQVRWD 247

Query: 257 TVEGIDSGFHEGIISRY 273
           T   +    H   I   
Sbjct: 248 TSIDVQPYIHRRTIRTI 264


>gi|322707444|gb|EFY99022.1| activating signal cointegrator 1 complex subunit 3 [Metarhizium
            anisopliae ARSEF 23]
          Length = 1969

 Score = 44.6 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/126 (12%), Positives = 28/126 (22%), Gaps = 16/126 (12%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               + +  G GKT      M W    RP   ++ IA  +  ++  +             +
Sbjct: 1154 NVLLGSPTGSGKTVAAELAMWWAFRERPKSKVVYIAPMKALVRERV-------------K 1200

Query: 139  HWFEMQSLSLHPSGWY-AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN--THGMAV 195
             W +  +  L                       I       +                 V
Sbjct: 1201 DWGKRLAQPLGLKIVELTGDNTPDTRTIKDADIIITTPEKWDGISRSWQTRGYVRQVSLV 1260

Query: 196  FNDEAS 201
              DE  
Sbjct: 1261 IIDEIH 1266


>gi|322695748|gb|EFY87551.1| activating signal cointegrator 1 complex subunit 3 [Metarhizium
            acridum CQMa 102]
          Length = 1950

 Score = 44.6 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/126 (12%), Positives = 28/126 (22%), Gaps = 16/126 (12%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               + +  G GKT      M W    RP   ++ IA  +  ++  +             +
Sbjct: 1135 NVLLGSPTGSGKTVAAELAMWWAFRERPKSKVVYIAPMKALVRERV-------------K 1181

Query: 139  HWFEMQSLSLHPSGWY-AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN--THGMAV 195
             W +  +  L                       I       +                 V
Sbjct: 1182 DWGKRLAQPLGLKIVELTGDNTPDTRTIKDADIIITTPEKWDGISRSWQTRGYVRQVSLV 1241

Query: 196  FNDEAS 201
              DE  
Sbjct: 1242 IIDEIH 1247


>gi|269104765|ref|ZP_06157461.1| putative bacteriophage terminase large subunit [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268161405|gb|EEZ39902.1| putative bacteriophage terminase large subunit [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 554

 Score = 44.6 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/173 (9%), Positives = 40/173 (23%), Gaps = 12/173 (6%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
            K  I   R +G ++     +L        +    IA  +         ++      LP 
Sbjct: 52  RKNIILKARQLGFSSAIDIYLLDEALWHKNLKCGIIAQDQGAAGEIFRTKIEIPFDNLPI 111

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
               E    S              +   +        ++            +        
Sbjct: 112 WLKAEFPIESRRS-----GANGGYILFKNGSSIQCATSFRSGTVQRLHISEHGKI----- 161

Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250
              +  P    +   G    ++      + S    + G F+ +    L+ +  
Sbjct: 162 --CAKYPQKAKEVKTGTLNTIHQKAICFIESTAEGVGGDFHSMCVRSLDLFNS 212


>gi|228956148|ref|ZP_04118032.1| Terminase [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|228803525|gb|EEM50260.1| Terminase [Bacillus thuringiensis serovar kurstaki str. T03a001]
          Length = 483

 Score = 44.6 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 53/187 (28%), Gaps = 26/187 (13%)

Query: 54  WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL--ISTRPGMSII 111
           WQ  F+ A     H              ++  R  GK+T+ + + L+L      PG  I 
Sbjct: 4   WQKAFLAASFGFVHKIDGTRKYREVLLIVA--RKNGKSTIASGIGLYLQVADGEPGAEIY 61

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +A    Q K  +W +  + +   P         L         EL         K    
Sbjct: 62  AVATKLDQAK-LVWLDAKRMVKKSPV--------LLKRIKPLVRELNADFNDSTFKPLGS 112

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK--SILGFFTELNPNRFWIMTSN 229
              T            H         DE     D       + G  +   P  F I T+ 
Sbjct: 113 DSETLDGLN------VHG-----AMMDEIHAWKDKNLYDVIVDGTSSREQPMIFMITTAG 161

Query: 230 TRRLNGW 236
           T R + +
Sbjct: 162 TIRESVY 168


>gi|218665442|ref|YP_002427301.1| exodeoxyribonuclease V, alpha subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|218517655|gb|ACK78241.1| exodeoxyribonuclease V, alpha subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 646

 Score = 44.6 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 39/136 (28%), Gaps = 14/136 (10%)

Query: 81  AISAGRGIGKTTLNAWMM-LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            I+ G G GKT   A  M L + ++   + I+  A +         +  S   ++     
Sbjct: 197 IITGGPGTGKTYTAARFMALLMATSSTPLRIVLAAPTGKAAVRIDESLQSAVGTLPQLSQ 256

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +M +                   DS+ +        E                +  DE
Sbjct: 257 IPDMTAAFARLRPARTLHSLLGARPDSRRFRHDAANPLE-------------LDVLVVDE 303

Query: 200 ASGTPDIINKSILGFF 215
           AS     +  ++L   
Sbjct: 304 ASMIHQEMMAALLRAL 319


>gi|198284628|ref|YP_002220949.1| exodeoxyribonuclease V subunit alpha [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|198249149|gb|ACH84742.1| exodeoxyribonuclease V, alpha subunit [Acidithiobacillus
           ferrooxidans ATCC 53993]
          Length = 650

 Score = 44.6 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 39/136 (28%), Gaps = 14/136 (10%)

Query: 81  AISAGRGIGKTTLNAWMM-LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            I+ G G GKT   A  M L + ++   + I+  A +         +  S   ++     
Sbjct: 201 IITGGPGTGKTYTAARFMALLMATSSTPLRIVLAAPTGKAAVRIDESLQSAVGTLPQLSQ 260

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +M +                   DS+ +        E                +  DE
Sbjct: 261 IPDMTAAFARLRPARTLHSLLGARPDSRRFRHDAANPLE-------------LDVLVVDE 307

Query: 200 ASGTPDIINKSILGFF 215
           AS     +  ++L   
Sbjct: 308 ASMIHQEMMAALLRAL 323


>gi|300786007|ref|YP_003766298.1| ATPase [Amycolatopsis mediterranei U32]
 gi|299795521|gb|ADJ45896.1| ATPase [Amycolatopsis mediterranei U32]
          Length = 1131

 Score = 44.6 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 35/124 (28%), Gaps = 7/124 (5%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM-LPHR 138
            A+    G GKT L   ++  L+  R G ++   + S   ++N L A       +    R
Sbjct: 737 LAVQGPPGAGKTYLAGRLIARLV--RAGRTVAVTSTSHKAVENVLSAAKKSAPELPCAKR 794

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                   +          L +        + +    ++                 +  D
Sbjct: 795 AKKTPDPAAPWDQPKSNPALVKWREEHDTGHLVGGTAWTFANA----AVREEPFDLLIID 850

Query: 199 EASG 202
           EA  
Sbjct: 851 EAGQ 854


>gi|221633560|ref|YP_002522786.1| hypothetical protein trd_1584 [Thermomicrobium roseum DSM 5159]
 gi|221155562|gb|ACM04689.1| conserved hypothetical protein [Thermomicrobium roseum DSM 5159]
          Length = 489

 Score = 44.6 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 29/262 (11%), Positives = 58/262 (22%), Gaps = 33/262 (12%)

Query: 86  RGIGKTTLNAWMMLWLI--STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           R  GK    A  + WL+    R G  ++    S          + +     L        
Sbjct: 62  RQSGKDEALAQFLAWLLLRFHRRGGEVVVALPSWR-------PQGALARERLLAVLAAPR 114

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
            +  L   G   E+    + +            S            T  + +  +EA   
Sbjct: 115 LAALLAGLGLAPEVAGARVALGRAVVRYASAGPSANVRG------LTASLLLVANEAQDI 168

Query: 204 -PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI------PLEDWKRYQIDTR 256
            PD  + +                       +                    + +++   
Sbjct: 169 APDRWDSAFAPMAASTGAPAL--YLGTPWGSDSLLARELRYLTALERQDGQQRVWRVPWT 226

Query: 257 TVEGIDSGF---HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN---YIEEAMSREA 310
           TV      +       +++ G      R E   +          P      +        
Sbjct: 227 TVAAELPAYGDHVRERMAQLGAGHPFVRTEYGLE-ELAGEGRLFPPERLALVRGDHPALL 285

Query: 311 IDDLYAPLIMGCDIAGEGGDKT 332
                    +  D+A  G D+ 
Sbjct: 286 APRPGERYALTVDVA--GEDEA 305


>gi|260771800|ref|ZP_05880718.1| ATP-dependent RNA helicase SrmB [Vibrio metschnikovii CIP 69.14]
 gi|260613092|gb|EEX38293.1| ATP-dependent RNA helicase SrmB [Vibrio metschnikovii CIP 69.14]
          Length = 411

 Score = 44.6 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 43/312 (13%), Positives = 80/312 (25%), Gaps = 50/312 (16%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
            F +P + Q E +                       SA  G GKT       L  +   P
Sbjct: 22  GFERPTQVQEEAI------------PHALDGRDILASAPTGTGKTAAFVIPALQYLQDFP 69

Query: 107 -----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
                   ++ +  +          E ++ L+     + F +     +          Q 
Sbjct: 70  RKKPGPARMLILTPTRELAMQIT--EQARQLAKHTRLNIFTITGGVQYQEHADILATTQD 127

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221
           +        +                       +  DEA    D+    ++         
Sbjct: 128 I--------VVATPGRLLEYINAERFDCRAIEWLILDEADRMLDMGFGPVVDRLAAECRW 179

Query: 222 RFWIMTSNTR----RLNGWFYDIFNIP---------LEDWKRYQIDTR-TVEGIDSGFHE 267
           R   +  +       + G+  D+ N P          E  K  Q   R           +
Sbjct: 180 RKQTLLFSATLEGRGVEGFTADLLNNPAEITAEPPRRERKKIAQWYHRADSMKHKLELLK 239

Query: 268 GIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AIDDLYAPL 318
            I+++    S V     E L +   +     IP  +I  E    R         +    +
Sbjct: 240 VILTQQAERSIVFIKTRERLAELRGELERAQIPCAWIQGEMPQDRRNNAISRFREGDINI 299

Query: 319 IMGCDIAGEGGD 330
           ++  D+A  G D
Sbjct: 300 LLATDVAARGID 311


>gi|260773326|ref|ZP_05882242.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
 gi|260612465|gb|EEX37668.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
          Length = 428

 Score = 44.6 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 73/272 (26%), Gaps = 38/272 (13%)

Query: 87  GIGKTTLNAWMMLWLISTRPGM------SIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           G GKT   +  ++  +              + +A +                     + +
Sbjct: 48  GTGKTAAFSLPVIQRLLDSGKKPSPHTARALILAPTRELAAQIAQNI----------KDY 97

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
            +  SLS+       ++  Q   ++S    +       E   +       +   +  DEA
Sbjct: 98  VKYTSLSVTAVYGGNKMSSQVRQLESGVDILVATPGRLEEHLSEGNVSLANLEFLVFDEA 157

Query: 201 SGTPDIIN--KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
               D+                 +  + ++ T               +     +++T   
Sbjct: 158 DRILDMGFINPVRKIMLEVETSPQIMMFSATTSAQLNQLAGDILRKPKRINADRVNTTAS 217

Query: 259 EGIDSGFHEGIISRYGLDSDV-----ARIEILGQFPQQEVNNFI-------------PHN 300
                 +      +  L S++      +  ++    ++  N  +               +
Sbjct: 218 TVAHVVYPVDQERKTELLSELIGRKNWQQVLVFVNYKETANQVVKELKLDGIKAVICHGD 277

Query: 301 YIEEAMSR--EAIDDLYAPLIMGCDIAGEGGD 330
             + A  R  +   +  A +++  D+A  G D
Sbjct: 278 KGQSARRRALDEFKEGKARVMVATDVAARGLD 309


>gi|254446700|ref|ZP_05060175.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198256125|gb|EDY80434.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 841

 Score = 44.6 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 48/194 (24%), Gaps = 46/194 (23%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P  WQ + +  +                   ++A  G GKT L                +
Sbjct: 40  PDLWQQDALYRIKAGED------------VVVNAPTGAGKTYL----------------V 71

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
             IA +    +  L          +P R     +       GW   ++   + ID +   
Sbjct: 72  ELIAETYKSGQIVL---------AVPTRALANDKLREFRAKGWRVGIVTGDVAIDPEAPV 122

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII---NKSILGFFTELNPNRFWI-- 225
           +     +++                  DE     D     N  +       +     +  
Sbjct: 123 VVATLETQK----PRFLLGKGPRLFVVDEYQMIGDETRGVNYELCIALAPPSTQLLLLSG 178

Query: 226 MTSNTRRLNGWFYD 239
             SN + +  W   
Sbjct: 179 SVSNPQDIVDWLQR 192


>gi|154504636|ref|ZP_02041374.1| hypothetical protein RUMGNA_02142 [Ruminococcus gnavus ATCC 29149]
 gi|153795118|gb|EDN77538.1| hypothetical protein RUMGNA_02142 [Ruminococcus gnavus ATCC 29149]
          Length = 457

 Score = 44.6 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 48/178 (26%), Gaps = 7/178 (3%)

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GMSIICIANSETQLK 121
                +  S        +    G  KT  +  + L  +   P      I+    +     
Sbjct: 242 FLQEALMQSAEKAPLVIVKGMAGTSKTFYSLAVGLEKLLNNPSGEYRRILICRPNALFDS 301

Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
           +  +    +   + P      M +L         E       ++ K   I  R   +   
Sbjct: 302 DIGFLPGDEQEKISPL-MRPIMDNLEQLVDSSDRERYSNEQELNDKIQEIFDRGIIQTEA 360

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
            TF+   +     +  DEA          I G  T        I+  +  +++  + D
Sbjct: 361 LTFIRGRSIMKTYLIIDEAQNMTPAQ---IKGIITRAGKETKIILLGDPNQIDRPYLD 415


>gi|30062674|ref|NP_836845.1| putative terminase of prophage CP-933C [Shigella flexneri 2a str.
           2457T]
 gi|56479836|ref|NP_707056.2| putative terminase of prophage CP-933C [Shigella flexneri 2a str.
           301]
 gi|30040922|gb|AAP16652.1| putative terminase of prophage CP-933C [Shigella flexneri 2a str.
           2457T]
 gi|56383387|gb|AAN42763.2| putative terminase of prophage CP-933C [Shigella flexneri 2a str.
           301]
 gi|313650396|gb|EFS14803.1| phage Terminase family protein [Shigella flexneri 2a str. 2457T]
 gi|332758314|gb|EGJ88637.1| phage Terminase family protein [Shigella flexneri 4343-70]
 gi|332759348|gb|EGJ89656.1| phage Terminase family protein [Shigella flexneri 2747-71]
 gi|332761093|gb|EGJ91380.1| phage Terminase family protein [Shigella flexneri K-671]
 gi|332767370|gb|EGJ97564.1| phage Terminase family protein [Shigella flexneri 2930-71]
 gi|333005475|gb|EGK24993.1| phage Terminase family protein [Shigella flexneri K-218]
 gi|333019452|gb|EGK38735.1| phage Terminase family protein [Shigella flexneri K-304]
          Length = 492

 Score = 44.6 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 47/232 (20%), Gaps = 25/232 (10%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             WQ      +             T     +   R   K+T  A +  W +    G   I
Sbjct: 9   EPWQQFAFACILGFKVKATGRRKYTSAFIEV--PRKNAKSTTAAILANWFLIMENGQQDI 66

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A         ++    +             + L    +    +++        K    
Sbjct: 67  YTAAVSRDQARIVFDNARQMC--------LLSRPLRRRVNIQAHKVIHPKSNSLLKPLAA 118

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
              T     P                DE    PD    S L       P       + + 
Sbjct: 119 KAATIEGTNPS-----------LSIVDEYHLHPDNGVYSALELGMGARPEGLLFAITTSG 167

Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283
                          D+    +D   V          +     +D     I+
Sbjct: 168 SNVVSACKQHY----DYCCQILDGEEVNDSIFVLIYELDDENEVDDPAMWIK 215


>gi|332098281|gb|EGJ03254.1| phage Terminase family protein [Shigella dysenteriae 155-74]
          Length = 492

 Score = 44.6 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 48/232 (20%), Gaps = 25/232 (10%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             WQ      +             T     +   R   K+T  A +  W +    G   I
Sbjct: 9   EPWQQFAFACILGFKVKATGRRKYTSAFIEV--PRKNAKSTTAAILANWFLIMENGQQDI 66

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A         ++ +  +             + L    +    +++        K    
Sbjct: 67  YTAAVSRDQARIVFDDARQMC--------LLSRPLRRRVNIQAHKVMHPKSNSLLKPLAA 118

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
              T     P                DE    PD    S L       P       + + 
Sbjct: 119 KAATIEGTNPS-----------LSIVDEYHLHPDNGVYSALELGMGARPEGLLFAITTSG 167

Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283
                          D+    +D   V          +     +D     I+
Sbjct: 168 SNVVSACKQHY----DYCCQILDGEEVNDSIFVLIYELDDENEVDDPAMWIK 215


>gi|119470499|ref|ZP_01613202.1| ATP-dependent RNA helicase [Alteromonadales bacterium TW-7]
 gi|119446200|gb|EAW27477.1| ATP-dependent RNA helicase [Alteromonadales bacterium TW-7]
          Length = 408

 Score = 44.6 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 21/196 (10%), Positives = 40/196 (20%), Gaps = 15/196 (7%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-----SII 111
           +                         SA  G GKT       +  +   P        ++
Sbjct: 18  KMGYEKPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAIQYLLDFPRREPGFARVL 77

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +  +           + +   +L  R       L +                +  +  +
Sbjct: 78  IMTPTRELAYQ-----IHEQCELLAKR-----THLKIGVVTGGINYGTHKEIFEKNNDVL 127

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
                           H  H   +  DEA    D+  K  +    +   NR      +  
Sbjct: 128 IATPGRLMEYLETENFHAEHVEMLIIDEADRMLDMGFKKEMSRICDEAKNRRQCFLFSAT 187

Query: 232 RLNGWFYDIFNIPLED 247
                        L D
Sbjct: 188 LEGDSVERFAETTLND 203


>gi|315426340|dbj|BAJ47980.1| helicase-associated endonuclease for fork-structured DNA
           [Candidatus Caldiarchaeum subterraneum]
 gi|315426365|dbj|BAJ48004.1| helicase-associated endonuclease for fork-structured DNA
           [Candidatus Caldiarchaeum subterraneum]
          Length = 694

 Score = 44.6 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/142 (9%), Positives = 36/142 (25%), Gaps = 9/142 (6%)

Query: 60  EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
           + ++   +              +     +GKT +   +   L+   PG  I+ +A +   
Sbjct: 11  DTIEDREYQRSMVEEALRGNTLVVLPTALGKTVIAELVAAELLHRHPGCRILVMAPT--- 67

Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
                   +         +H    +   +  +G  +E + +          +     +  
Sbjct: 68  ------KPLVLQHRQSFLKHLNISEDEGIAITGEVSESVRKMAWGSPSVRIVFSTPQTAF 121

Query: 180 RPDTFVGPHNTHGMAVFNDEAS 201
                          +  DE  
Sbjct: 122 NDYRRGWIRLEEFALLVFDECH 143


>gi|197302458|ref|ZP_03167513.1| hypothetical protein RUMLAC_01186 [Ruminococcus lactaris ATCC
           29176]
 gi|197298356|gb|EDY32901.1| hypothetical protein RUMLAC_01186 [Ruminococcus lactaris ATCC
           29176]
          Length = 715

 Score = 44.6 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 53/187 (28%), Gaps = 13/187 (6%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +  HC          IF+  +    G GKT  +    L          II +    + +
Sbjct: 215 EILSHCIKEGKQKEG-IFRLTV--PTGGGKTVASLAFALEHAVKNHKDRIIYVIPYTSII 271

Query: 121 KN--TLWAEVSKWLSMLPHRHWFEMQSLSLH--PSGWYAELLEQSMGIDSKHYTITCRTY 176
           +    ++ E+    ++L + +  + +S               +  +   +        + 
Sbjct: 272 EQNAQVFREILGEENVLENHYNVDYESSEEFKPMQLASENWDKPVVVTTN---VQFFESL 328

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT---ELNPNRFWIMTSNTRRL 233
              +       HN     V  DEA   P    K  +       +       + T+    L
Sbjct: 329 FANKSSKCRKIHNIANSVVIFDEAQMLPMDYLKPCIAMLQELVDSYSVSIVLCTATQPAL 388

Query: 234 NGWFYDI 240
           + +F   
Sbjct: 389 DSFFSKN 395


>gi|118470437|ref|YP_885678.1| hypothetical protein MSMEG_1288 [Mycobacterium smegmatis str. MC2
           155]
 gi|118171724|gb|ABK72620.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2
           155]
          Length = 549

 Score = 44.6 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 38/140 (27%), Gaps = 5/140 (3%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  +  G G GKT L       L     G  +  +  S   L + L    + W       
Sbjct: 221 RIEVRGGAGSGKTFLAMEQARRLAQ--DGQRVALVCYS-HGLASYLERVTATWPRRQQPA 277

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
           +  E  +L +                  + +     +   E        H     AV  D
Sbjct: 278 YVGEFHALGVQWGAPEGPDEALRTEQTVQFWEHDLPSQMTELAAQLEPGHR--FDAVVVD 335

Query: 199 EASGTPDIINKSILGFFTEL 218
           EA    D     +LG   + 
Sbjct: 336 EAQDFADAWWDPLLGALHDP 355


>gi|227522324|ref|ZP_03952373.1| phage terminase [Lactobacillus hilgardii ATCC 8290]
 gi|227090531|gb|EEI25843.1| phage terminase [Lactobacillus hilgardii ATCC 8290]
          Length = 614

 Score = 44.6 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 40/317 (12%), Positives = 86/317 (27%), Gaps = 55/317 (17%)

Query: 54  WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP----GMS 109
           WQ   +                     +++  R  GK+ L   ++L+             
Sbjct: 108 WQQAILCLSQGWRTKEDKQKRFERCMVSVA--RTNGKSYLLNILILYAYLVEDSDQFNAD 165

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           +  +A  + Q K + W  + +  + L     F    L    +    + + +S    ++  
Sbjct: 166 LCYLAPVDKQSKKS-WRYIKQTFNSLQEMPGFR--KLIKDQNIAINDDVLKSTKTQNQIL 222

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEA---SGTPDIINKSILGFFTELNPNRFWIM 226
            +T  +   +           H +    DE    +   D+I+K   G     N   F+I 
Sbjct: 223 RMTAGSAQLD---------AFHFLFATVDEYGDENFNSDVISKVTSGQVQTSNRQTFFIS 273

Query: 227 T--SNTR----RLNGWFYDIFNIPLED---------WKRYQIDTRTVE--GIDSGFH--- 266
           T  SN +                             W++   D        + S      
Sbjct: 274 TAYSNPKVPMYSDVRRLTKAMEKDSNRTEDSTLALIWQQDDQDEVDDPETWVKSNPLLDL 333

Query: 267 -------------EGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
                        E          +      L  + Q   + ++    I++++  +   D
Sbjct: 334 PAKHDTLLKGLISERDSKLEDGTLNDFINRNLNMWLQTAKDKYLKLEDIQKSVVSDFEID 393

Query: 314 LYAPLIMGCDIAGEGGD 330
                 +G D++    D
Sbjct: 394 -NQDCYVGFDLSHASDD 409


>gi|124002988|ref|ZP_01687839.1| hypothetical protein M23134_07453 [Microscilla marina ATCC 23134]
 gi|123991638|gb|EAY31046.1| hypothetical protein M23134_07453 [Microscilla marina ATCC 23134]
          Length = 537

 Score = 44.6 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 40/266 (15%), Positives = 70/266 (26%), Gaps = 37/266 (13%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
            AG+G GKT     +   LIS  PG+     AN++ QL ++    V      L    + E
Sbjct: 32  MAGQGAGKTHGAGLISFRLISNFPGVFGFMGANTDMQLTDSTLYRVFLVWKDLGLEEYDE 91

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE-----ERPDTFVGPHNTHGMAVFN 197
                 +  G          G   K Y      ++         + +             
Sbjct: 92  YLGQGDYVVGTQPPRHFSREGHAFKSYRNKISFWNGCVVFIGSLENYKAHDGKEFAWAIL 151

Query: 198 DEASGTPDI-INKSILGFFTELNPNRFWIMT----------SNT---RRLNGWFYDIFNI 243
           DE   T +  + + ILG   +                     +           Y   + 
Sbjct: 152 DETKDTREEAVQEVILGRLRQQGLYISQTRAGALTSEEYDEGSPVVANLPFNPLYIFTSP 211

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-----------FPQQE 292
               W     D   +      + E I ++        + ++ G              +  
Sbjct: 212 AKVPWIN---DWFELS----EYEEEIKAKIYDPPQYFKKKVGGDSKFVVISATHLNLKNL 264

Query: 293 VNNFIPHNYIEEAMSREAIDDLYAPL 318
            +N+I       A  R  +     PL
Sbjct: 265 PSNYIKKQEANLASHRHGMLIYGDPL 290


>gi|320581264|gb|EFW95485.1| Essential tripartite DNA replication factor [Pichia angusta DL-1]
          Length = 1226

 Score = 44.6 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 33/123 (26%), Gaps = 7/123 (5%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKTT+ A ++        G +++  + + + + N L   +    +    R     +  
Sbjct: 878 GTGKTTVTASLI--KCLVENGQTVLIASYTHSAVDNILEKVIDIVDNPKILRVGAPKKIT 935

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITC-----RTYSEERPDTFVGPHNTHGMAVFNDEAS 201
                              ++ +            +          H  H      DEAS
Sbjct: 936 EKVRKYSLYSTDTIYPMESAEDFRHAFLETNIVATTCLGIQDTAFIHRQHFDYCIIDEAS 995

Query: 202 GTP 204
              
Sbjct: 996 QVS 998


>gi|283455514|ref|YP_003360078.1| gp26 [Bifidobacterium dentium Bd1]
 gi|283102148|gb|ADB09254.1| gp26 [Bifidobacterium dentium Bd1]
          Length = 480

 Score = 44.6 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 36/307 (11%), Positives = 66/307 (21%), Gaps = 55/307 (17%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ    +        +         +  +S  R  GK+TL            P   I  
Sbjct: 33  PWQRYVADVAGE---IDPATGTYYYDRVILSTPRQCGKSTLIDTEDTRNAQLGPDRKIYY 89

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           +A +    +         ++  L       +       +G             +  +   
Sbjct: 90  LAQTGKDAE----KHFKDYVQQLAKSRLAPIACRPRLSNGGM------EQRFINGSFIC- 138

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI------M 226
                     T V  H T       DEA    D   K IL         R         +
Sbjct: 139 ------PLAVTKVAGHGTQMDKFTIDEAFSLDDETGKLILDGMAPTMNTRLHFTGVQPQI 192

Query: 227 TSNTRRLN--------------------GWFYDIFNIPLE-DWKRYQIDTRTVEGIDSGF 265
              +                           +  F IP + D +  Q   +        +
Sbjct: 193 WITSTEGTADSTFLNGLLDGLRAGDVPRRTCWFDFGIPADADPEDLQTILKWHPAAGLLW 252

Query: 266 HEGIISRYG---LDSDVARIEILGQFPQQE-VNNFIPHNYIEEAMSREAIDDL--YAPLI 319
               +  +      +        G        +  I     +  ++     D     PL+
Sbjct: 253 GLDQLRDFRGQFEGNAAGWARAFGNRRDTGVADRVIDETLWQATVATPIGPDRLDGRPLV 312

Query: 320 --MGCDI 324
                D+
Sbjct: 313 FAAAVDV 319


>gi|221640075|ref|YP_002526337.1| DNA helicase [Rhodobacter sphaeroides KD131]
 gi|221160856|gb|ACM01836.1| DNA helicase [Rhodobacter sphaeroides KD131]
          Length = 1695

 Score = 44.6 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 40/343 (11%), Positives = 84/343 (24%), Gaps = 31/343 (9%)

Query: 10   KLEQELHEMLMHAECVLSFKN-----FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64
              E+ L  +         +       F+ R+ P   +G  L   +    W  + +E +  
Sbjct: 1023 YAEKGLERIEEAVRLSEDYFALDQESFLRRWMP--GRGVELRRQTTGKAW-KQIVEDLGN 1079

Query: 65   HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS-TRPGMS-IICIANSETQLKN 122
                 +   +       + AG G GKT +    + +L+   R     I+ ++ +      
Sbjct: 1080 PVQQEIVADDREETNVLVLAGPGSGKTRVLVHRIAYLLRVKREDPRGILVLSYNRHAAAE 1139

Query: 123  TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182
                                  +L++   G                     R  + E   
Sbjct: 1140 IRARLRHLVGEDAARVTVSTCHALAMRLVGASFTGGTAEQRDFQDVLREAVRQINGEGLS 1199

Query: 183  TFVGPHNTHGMA-----VFNDEASGTPDIINKSILG----FFTELNPNRFWIMTSNTRRL 233
                      +      +  DE           I         + +              
Sbjct: 1200 RTEAEAQREALIQGYRWILVDEYQDIGREEYDLIAAVAGRSLEDPDQRLSLFAVG---DD 1256

Query: 234  NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV---ARIEILGQFPQ 290
            +   Y      +   +R++ D R      +  +          + V   AR  +  + P 
Sbjct: 1257 DQNIYAFNGASVSYIRRFEEDYRARPKFLTENYRSTRHIVEAANQVIEPARGRMKARHPI 1316

Query: 291  QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTV 333
               +     +    AM+R          +   D+A    D T 
Sbjct: 1317 TV-DKMRSLDPGGGAMARHDPVGQGR--VQFLDVA---ADDTA 1353


>gi|254476244|ref|ZP_05089630.1| conserved hypothetical protein [Ruegeria sp. R11]
 gi|214030487|gb|EEB71322.1| conserved hypothetical protein [Ruegeria sp. R11]
          Length = 1106

 Score = 44.6 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 39/122 (31%), Gaps = 7/122 (5%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           +    G GKT + A  +L L+  R G  I   +NS   +KN L   +       P     
Sbjct: 728 VQGPPGTGKTYVTARAILALL--REGKRIGVASNSHEAVKNVLLGVLEALAPEDPDIEIL 785

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
              S  ++P       +  +   +   + +    +   R              +F DEA 
Sbjct: 786 HKLSDDIYPDDCPIARVTDNGRAEEGLHLVGGTVFFFAREANRQRF-----DYIFVDEAG 840

Query: 202 GT 203
             
Sbjct: 841 QV 842


>gi|198274524|ref|ZP_03207056.1| hypothetical protein BACPLE_00672 [Bacteroides plebeius DSM 17135]
 gi|198272578|gb|EDY96847.1| hypothetical protein BACPLE_00672 [Bacteroides plebeius DSM 17135]
          Length = 482

 Score = 44.6 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 75/280 (26%), Gaps = 12/280 (4%)

Query: 58  FMEAVDV-HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
           F++ V         + S   I++ A+S     GK+ +++  + W++   P  S++     
Sbjct: 48  FLKKVAEAFMRVYESYSAGIIYRLAVSMPPRAGKSYISSLFIAWMLGHFPEESVM----- 102

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
                +TL+ ++S     +     F      ++  G    +   ++    +         
Sbjct: 103 RNCCSDTLYNKLSYDARDIVKSKRFHEIFPDIYLKGDKQNVKSWNVEGARQVSYFGGGVG 162

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP---NRFWIMTSNTRRL 233
                        T  +    ++A    +          T  +    N   I        
Sbjct: 163 GTVIGFGASMLAMTDDLYKSLEDALSDNNNEKVWSWKQGTHDSRIEGNCCLIDIGTRWSA 222

Query: 234 NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF---PQ 290
           N     +      +           E               L S+      + ++   P 
Sbjct: 223 NDVLGRLEEAGKYNEIIRIAALDENERSFCEDVHTTEYYLELRSETDESIWMAEYMQEPF 282

Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGD 330
           +      P + +      +         I  CD A +G D
Sbjct: 283 EAKGLLFPKSSLMRFKLADIAGKRPDGTIGACDTADKGDD 322


>gi|67611038|ref|XP_667129.1| hypothetical protein [Cryptosporidium hominis TU502]
 gi|54658236|gb|EAL36904.1| hypothetical protein Chro.80234 [Cryptosporidium hominis]
          Length = 991

 Score = 44.6 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 5/127 (3%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL-WAEVSKW-LSMLPH 137
            +++AGRG GK+     + L    ++   +I   A S   +     + E+    L  L H
Sbjct: 296 ISLTAGRGRGKSAAL-GLSLACAVSQGFSNIFITAPSAENVLTVFEFIEIGLQSLGYLEH 354

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
           +H+  ++S ++            S  I    +    +T    +P+ +          V  
Sbjct: 355 KHFELVRSKTIDSRVGGDFSHSVSRLIRVNIFKDHRQTIQYIKPEDYHLVS--QAEIVVM 412

Query: 198 DEASGTP 204
           DEA+  P
Sbjct: 413 DEAAAIP 419


>gi|66359852|ref|XP_627104.1| KRE33p like superfamily I ATPAse fused to an acetylase
           [Cryptosporidium parvum Iowa II]
 gi|46228529|gb|EAK89399.1| KRE33p like superfamily I ATPAse fused to an acetylase
           [Cryptosporidium parvum Iowa II]
          Length = 1058

 Score = 44.6 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 5/127 (3%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL-WAEVSKW-LSMLPH 137
            +++AGRG GK+     + L    ++   +I   A S   +     + E+    L  L H
Sbjct: 296 ISLTAGRGRGKSAAL-GLSLACAVSQGFSNIFITAPSAENVLTVFEFIEIGLQSLGYLEH 354

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
           +H+  ++S ++            S  I    +    +T    +P+ +          V  
Sbjct: 355 KHFELVRSKTIDSRVGGDFSHSVSRLIRVNIFKDHRQTIQYIKPEDYHLVS--QAEIVVM 412

Query: 198 DEASGTP 204
           DEA+  P
Sbjct: 413 DEAAAIP 419


>gi|56964603|ref|YP_176334.1| terminase large subunit G2p [Bacillus clausii KSM-K16]
 gi|56910846|dbj|BAD65373.1| terminase large subunit G2p [Bacillus clausii KSM-K16]
          Length = 426

 Score = 44.6 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 24/240 (10%), Positives = 64/240 (26%), Gaps = 25/240 (10%)

Query: 98  MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
            +  +  R  ++ + I   +  ++ +++ ++   + +    H F++    +         
Sbjct: 46  AVVQLLMRYPINGVGIRKIDNTIELSVFEQIKWAIDVHGVSHLFKINKSPMR-------- 97

Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSILGFFT 216
               +    +   +  R  +E      +   N      + +E A    +    +I     
Sbjct: 98  ----ITYKPRGNYMVFRGAAEPERIKSLKSANFPFAFAWIEELAEFKTEDEVTTITNSLL 153

Query: 217 EL----NPNRFWIMTSNTR-RLNGWFYDIFNIPLEDWKRY--QIDTRTVEGIDSGFHEGI 269
                      +  + N   R   W    +    +    +           I   F E  
Sbjct: 154 RGELDNGLFYKFFYSYNPPKRKQSWVNKKYETSFQPTNTFVHHSTYLDNPFISKQFIEEA 213

Query: 270 ISRYGLDSDVARIEILGQFPQQ-----EVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI 324
            +    +    R E LG+         +     P    +E +++            G D 
Sbjct: 214 EATKERNEKRYRWEYLGEAIGSGIVPFDNLTVKPGIITDEMVAQFDNIRQGQDYGYGPDP 273


>gi|325092077|gb|EGC45387.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces
            capsulatus H88]
          Length = 2017

 Score = 44.6 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 18/152 (11%), Positives = 38/152 (25%), Gaps = 18/152 (11%)

Query: 58   FMEAVDVHCHSNVNNSNPTIF--------KCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
             +E +        N     IF           + +  G GKT      M W    +PG  
Sbjct: 1133 ILEDIYAQRFQFFNPMQTQIFHTLYHTPANVLLGSPTGSGKTVAAELAMWWAFREKPGSK 1192

Query: 110  IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
            ++ IA  +  ++  +     +  + +  +   E+   +   +    +        +    
Sbjct: 1193 VVYIAPMKALVRERVQDWRRRLTAPMGLK-LVELTGDNTPDTRTIRDADIIITTPEKWDG 1251

Query: 170  TITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
                                     V  DE  
Sbjct: 1252 ISRSWQTRGYV---------RQVSLVIIDEIH 1274


>gi|299133515|ref|ZP_07026709.1| protein of unknown function DUF264 [Afipia sp. 1NLS2]
 gi|298591351|gb|EFI51552.1| protein of unknown function DUF264 [Afipia sp. 1NLS2]
          Length = 239

 Score = 44.6 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 20/159 (12%), Positives = 37/159 (23%), Gaps = 28/159 (17%)

Query: 84  AGRGIGKTTLNAWMM------LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
            GRG GKT   A  +      L  ++  P   I  +  +E  ++  +   VS  L++   
Sbjct: 54  GGRGAGKTRAGAEWIRAQALGLSPLAAAPAGRIALVGETEHDVREVMIEGVSGLLAVHRR 113

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
                                                       +             ++
Sbjct: 114 DERPVWLPSRKRLE------------------WNNGAVAYAFSAEDPESLRGPQFSCAWS 155

Query: 198 DEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
           DE +     D     +          R   + + T R  
Sbjct: 156 DELAKWRYADAAFDMLQFGLRLGAQPRQ--LITTTPRPT 192


>gi|260424777|ref|ZP_05733258.2| PhoH family protein [Dialister invisus DSM 15470]
 gi|260403160|gb|EEW96707.1| PhoH family protein [Dialister invisus DSM 15470]
          Length = 319

 Score = 44.6 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 29/256 (11%), Positives = 65/256 (25%), Gaps = 39/256 (15%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCA-----ISAGR-----------GIGKTTLNA 95
              ++E +  +     +   N      +       + A R           G GKT L  
Sbjct: 75  DEGKMELLHEMKEDIINLTRNGEAVRPRTLGQKMYVDAIRRNSITFGVGPAGTGKTYLAV 134

Query: 96  WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
            +  + +       II +  +             +    L        + ++ +    + 
Sbjct: 135 ALGAFFLKNHDVRRIILVRPA------------VEAGEKLGFLPGDMQEKVNPYLRPLFD 182

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
            L    M    +   +  +   E  P  ++         V  DEA    +   + +  F 
Sbjct: 183 GL--LDMFGPEEFIRLQQKGQIEVVPLAYMRGRTLEKSFVILDEAQ---NTTVEQLKMFL 237

Query: 216 TELNPNRFWIMTSN------TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI 269
           T L      ++  +         +     D   +         +     + +       I
Sbjct: 238 TRLGDRSKMVINGDVTQIDLPPHVKSGLIDAQRVLANVSDIESVTFTEDDVVRHDLVAAI 297

Query: 270 ISRYGLDSDVARIEIL 285
           I  Y  D+   R  + 
Sbjct: 298 IHAYEEDTKKKRQGVE 313


>gi|240281429|gb|EER44932.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces
            capsulatus H143]
          Length = 1999

 Score = 44.6 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 18/152 (11%), Positives = 38/152 (25%), Gaps = 18/152 (11%)

Query: 58   FMEAVDVHCHSNVNNSNPTIF--------KCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
             +E +        N     IF           + +  G GKT      M W    +PG  
Sbjct: 1106 ILEDIYAQRFQFFNPMQTQIFHTLYHTPANVLLGSPTGSGKTVAAELAMWWAFREKPGSK 1165

Query: 110  IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
            ++ IA  +  ++  +     +  + +  +   E+   +   +    +        +    
Sbjct: 1166 VVYIAPMKALVRERVQDWRRRLTAPMGLK-LVELTGDNTPDTRTIRDADIIITTPEKWDG 1224

Query: 170  TITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
                                     V  DE  
Sbjct: 1225 ISRSWQTRGYV---------RQVSLVIIDEIH 1247


>gi|170783661|ref|YP_001648943.1| putative large subunit terminase [Enterobacteria phage Min27]
 gi|163955755|gb|ABY49905.1| putative large subunit terminase [Enterobacteria phage Min27]
          Length = 568

 Score = 44.6 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 29/290 (10%), Positives = 64/290 (22%), Gaps = 40/290 (13%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEA 61
           PR     +  E E    +M    + +    +   +    +   L  F      Q +   +
Sbjct: 8   PRCDEPSEMTEAEQRLFIMTK--LSNPWWRLNHLYKIQNEKGELVTFRM-RPAQRQLFRS 64

Query: 62  VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121
           +                K  I   R +G +T     +L      P +    +A  +    
Sbjct: 65  MHN--------------KNIILKARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQAAS 110

Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
                +++     LP         +               +            ++     
Sbjct: 111 EIFRTKIAVPFDHLPDWLRASFTIVERRSGASG-----GYILFGHGSSIQVATSFRSGTV 165

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
                  +           +  P    +   G    ++        S    + G FY++ 
Sbjct: 166 QRLHISEHGKI-------CAKYPAKAKELRTGTLNAVSDECIIFDESTAEGVGGDFYEMS 218

Query: 242 NIPLE-----------DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280
           N   E           D+K +           +   E  +          
Sbjct: 219 NRAQEIAASGLLLTAQDYKFHFYAWWQDPKYSARVPESGLKLSREKMTYF 268


>gi|156847104|ref|XP_001646437.1| hypothetical protein Kpol_1048p9 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156117114|gb|EDO18579.1| hypothetical protein Kpol_1048p9 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 1055

 Score = 44.6 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 76/259 (29%), Gaps = 46/259 (17%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             ++AGRG GK+     + +    +    +I   + S   LK  L+  + K    L ++ 
Sbjct: 279 VTLTAGRGRGKSAAL-GISIAAAVSHGYSNIFVTSPSPENLKT-LFEFIFKAFDALGYQE 336

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +   +      +   ++   +  D +           +               V  DE
Sbjct: 337 HIDYDIIQSTNPQFNKAIVRVDIKRDHRQTIQYIMPQDHQVLGQAE--------LVVIDE 388

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
           A+  P  I K +LG +       F   T N     G+     ++ L+  ++ +  + T  
Sbjct: 389 AAAIPLPIVKKLLGSYL-----VFMASTIN-----GYEGTGRSLSLKLIQQLRTQSTTSG 438

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL- 318
             +S        +   DS +                       E ++          P+ 
Sbjct: 439 RENSQTEIVSRDKKQTDSGIYDS---------------ARQLREISLDEPIRYAPGDPVE 483

Query: 319 -----IMGCDI-----AGE 327
                ++  D+     A  
Sbjct: 484 KWLNKLLCLDVTLMKSARF 502


>gi|154272686|ref|XP_001537195.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces
            capsulatus NAm1]
 gi|150415707|gb|EDN11051.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces
            capsulatus NAm1]
          Length = 1992

 Score = 44.6 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 18/152 (11%), Positives = 38/152 (25%), Gaps = 18/152 (11%)

Query: 58   FMEAVDVHCHSNVNNSNPTIF--------KCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
             +E +        N     IF           + +  G GKT      M W    +PG  
Sbjct: 1133 ILEDIYAQRFQFFNPMQTQIFHTLYHTAANVLLGSPTGSGKTVAAELAMWWAFREKPGSK 1192

Query: 110  IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
            ++ IA  +  ++  +     +  + +  +   E+   +   +    +        +    
Sbjct: 1193 VVYIAPMKALVRERVQDWRRRLTAPMGLK-LVELTGDNTPDTRTIRDADIIITTPEKWDG 1251

Query: 170  TITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
                                     V  DE  
Sbjct: 1252 ISRSWQTRGYV---------RQVSLVIIDEIH 1274


>gi|332559068|ref|ZP_08413390.1| DNA helicase [Rhodobacter sphaeroides WS8N]
 gi|332276780|gb|EGJ22095.1| DNA helicase [Rhodobacter sphaeroides WS8N]
          Length = 1679

 Score = 44.6 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 40/343 (11%), Positives = 84/343 (24%), Gaps = 31/343 (9%)

Query: 10   KLEQELHEMLMHAECVLSFKN-----FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64
              E+ L  +         +       F+ R+ P   +G  L   +    W  + +E +  
Sbjct: 1007 YAEKGLERIEEAVRLSEDYFALDQESFLRRWMP--GRGVELRRQTTGKAW-KQIVEDLGN 1063

Query: 65   HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS-TRPGMS-IICIANSETQLKN 122
                 +   +       + AG G GKT +    + +L+   R     I+ ++ +      
Sbjct: 1064 PVQQEIVADDREETNVLVLAGPGSGKTRVLVHRIAYLLRVKREDPRGILVLSYNRHAAAE 1123

Query: 123  TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182
                                  +L++   G                     R  + E   
Sbjct: 1124 IRARLRHLVGEDAARVTVSTCHALAMRLVGASFTGGTAEQRDFQDVLREAVRQINGEGLS 1183

Query: 183  TFVGPHNTHGMA-----VFNDEASGTPDIINKSILG----FFTELNPNRFWIMTSNTRRL 233
                      +      +  DE           I         + +              
Sbjct: 1184 RTEAEAQREALIQGYRWILVDEYQDIGREEYDLIAAVAGRSLEDPDQRLSLFAVG---DD 1240

Query: 234  NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV---ARIEILGQFPQ 290
            +   Y      +   +R++ D R      +  +          + V   AR  +  + P 
Sbjct: 1241 DQNIYAFNGASVSYIRRFEEDYRARPKFLTENYRSTRHIVEAANQVIEPARGRMKARHPI 1300

Query: 291  QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTV 333
               +     +    AM+R          +   D+A    D T 
Sbjct: 1301 TV-DKMRSLDPGGGAMARHDPVGQGR--VQFLDVA---ADDTA 1337


>gi|225156110|ref|ZP_03724592.1| hypothetical protein ObacDRAFT_8756 [Opitutaceae bacterium TAV2]
 gi|224803207|gb|EEG21448.1| hypothetical protein ObacDRAFT_8756 [Opitutaceae bacterium TAV2]
          Length = 301

 Score = 44.6 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 50/169 (29%), Gaps = 10/169 (5%)

Query: 86  RGIGKTTLNAWMMLWLISTRPG-------MSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           R +GK+   A   L  +  R          SI+  +    +        + K+  +   +
Sbjct: 31  RQLGKSFTLASKGLSRMILRKNHLCVFGSASILLGSEFIRKEAEVWQKVMEKFRQIAKDK 90

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
           +     +          +L E        ++  T  + S              G  VF D
Sbjct: 91  NLLLTTNADGLDFDAVCDLFEHQKLETRIYHDRTSYSRSRVVAPNPATAVGWTGD-VFLD 149

Query: 199 EASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL 245
           E    P    I ++++           W+ T+       + +++F  P 
Sbjct: 150 EVGRIPGLKDILEAVMPIMESNPEFIMWMATTPPPDDKHYSFELFQPPS 198


>gi|327355898|gb|EGE84755.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces
            dermatitidis ATCC 18188]
          Length = 2024

 Score = 44.6 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/152 (11%), Positives = 38/152 (25%), Gaps = 18/152 (11%)

Query: 58   FMEAVDVHCHSNVNNSNPTIF--------KCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
             +E +        N     IF           + +  G GKT      M W    +PG  
Sbjct: 1131 ILEEIYAQRFQFFNPMQTQIFHTLYHTPANVLLGSPTGSGKTVAAELAMWWAFREKPGSK 1190

Query: 110  IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
            ++ IA  +  ++  +     +  + +  +   E+   +   +    +        +    
Sbjct: 1191 VVYIAPMKALVRERVHDWRRRLTAPMGLK-LVELTGDNTPDTRTIRDADIIITTPEKWDG 1249

Query: 170  TITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
                                     V  DE  
Sbjct: 1250 ISRSWQTRGYV---------RQVSLVIIDEIH 1272


>gi|291000973|ref|XP_002683053.1| predicted protein [Naegleria gruberi]
 gi|284096682|gb|EFC50309.1| predicted protein [Naegleria gruberi]
          Length = 926

 Score = 44.6 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 63/202 (31%), Gaps = 22/202 (10%)

Query: 5   ISTDQKLEQELHEMLMHAECVL--SFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAV 62
                + E+ L   ++  +       K+ +    P G               Q + +   
Sbjct: 243 KPIVLQEEERLENHILSPKEKDLVDLKHKLEENQPLGTLVSQARSLD-----QAKAILKF 297

Query: 63  DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN 122
                     +       A+ A RG GK+     + +    +    +I   + S   LK 
Sbjct: 298 VDAISEKSLQTT-----VALLASRGRGKSAAL-GLAIASAVSYGYSNIFVTSPSPENLKT 351

Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182
            L+  + K L +L +R   + + +      +   ++  ++  + +      +T    +P+
Sbjct: 352 -LFEFIIKGLEVLKYRDQQDYEIVQSTNPAFNNAVVRLNIFKNHR------QTIQYIQPE 404

Query: 183 TFVGPHNTHGMAVFNDEASGTP 204
                       +  DEA+  P
Sbjct: 405 DSQKLG--QCELLVIDEAAAIP 424


>gi|282919808|ref|ZP_06327540.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus
           C427]
 gi|282316446|gb|EFB46823.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus
           C427]
          Length = 498

 Score = 44.6 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 28/283 (9%), Positives = 77/283 (27%), Gaps = 55/283 (19%)

Query: 82  ISAGRGIGKTTLNAWM----MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
           IS  R  GK+ + + M    +L+    +    I   +++  Q +   +   S+ ++++  
Sbjct: 30  ISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQTI-FKMASQQVNLMRS 88

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
           +  F  +   +          +  +            +      +            V  
Sbjct: 89  KSKFIREKTDVR---------KTDIEDVLSSSVFAPLS------NNPDAVDGKDPTVVIL 133

Query: 198 DEASGTPDIINKSILGF-FTELNPNRFWIMTSNTRRLNGWFYDIF--------------- 241
           DE +  PD    S      T        ++++    LN   Y  +               
Sbjct: 134 DELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEEVRADN 193

Query: 242 -----------NIPLEDWKRYQID----TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
                          ++ K  +      ++          +  I             ++ 
Sbjct: 194 YFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADIQDELEKGTSYHKILIK 253

Query: 287 QFP---QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAG 326
            F     Q  ++ +  +  E+ ++     +    + +G D++ 
Sbjct: 254 NFNLWQAQREDSLLDISDWEQVITPMPNIN-GKDVYIGVDLSR 295


>gi|239609198|gb|EEQ86185.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces
            dermatitidis ER-3]
          Length = 2024

 Score = 44.6 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/152 (11%), Positives = 38/152 (25%), Gaps = 18/152 (11%)

Query: 58   FMEAVDVHCHSNVNNSNPTIF--------KCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
             +E +        N     IF           + +  G GKT      M W    +PG  
Sbjct: 1131 ILEEIYAQRFQFFNPMQTQIFHTLYHTPANVLLGSPTGSGKTVAAELAMWWAFREKPGSK 1190

Query: 110  IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
            ++ IA  +  ++  +     +  + +  +   E+   +   +    +        +    
Sbjct: 1191 VVYIAPMKALVRERVHDWRRRLTAPMGLK-LVELTGDNTPDTRTIRDADIIITTPEKWDG 1249

Query: 170  TITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
                                     V  DE  
Sbjct: 1250 ISRSWQTRGYV---------RQVSLVIIDEIH 1272


>gi|261189015|ref|XP_002620920.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces
            dermatitidis SLH14081]
 gi|239591924|gb|EEQ74505.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces
            dermatitidis SLH14081]
          Length = 2024

 Score = 44.6 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/152 (11%), Positives = 38/152 (25%), Gaps = 18/152 (11%)

Query: 58   FMEAVDVHCHSNVNNSNPTIF--------KCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
             +E +        N     IF           + +  G GKT      M W    +PG  
Sbjct: 1131 ILEEIYAQRFQFFNPMQTQIFHTLYHTPANVLLGSPTGSGKTVAAELAMWWAFREKPGSK 1190

Query: 110  IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
            ++ IA  +  ++  +     +  + +  +   E+   +   +    +        +    
Sbjct: 1191 VVYIAPMKALVRERVHDWRRRLTAPMGLK-LVELTGDNTPDTRTIRDADIIITTPEKWDG 1249

Query: 170  TITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
                                     V  DE  
Sbjct: 1250 ISRSWQTRGYV---------RQVSLVIIDEIH 1272


>gi|195546532|ref|YP_002117560.1| terminase large subunit [Rhizobium phage 16-3]
 gi|102642474|gb|ABF71255.1| terminase large subunit [Rhizobium phage 16-3]
          Length = 525

 Score = 44.6 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 64/249 (25%), Gaps = 34/249 (13%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           +G  L    +   +Q +F+ AV  +               +I+  R  GKT L A ++L 
Sbjct: 24  EGTLLGKPVKLLPFQRKFILAVYDNPAGTSRAY------LSIA--RKNGKTGLIACLLLA 75

Query: 101 LI---STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
            I          I+  A S  Q      AEV  + + +        +   + PS      
Sbjct: 76  HIVGPEAYQNGRIVSGARSRKQA-----AEVFNYAAKMVMMSTELSKLARIVPSAKMIVG 130

Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT---PDIINKSILGF 214
           L +++   +                     H    +    DE        D   ++I   
Sbjct: 131 LAKNVEYQASSA-------------EAKSAHGGSPILAILDEVGQIKGPTDDFVEAIETS 177

Query: 215 FTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK--RYQIDTRTVEGIDSGFHEGIISR 272
                        S     +   +  +    E  K  R      T             + 
Sbjct: 178 QGAYEGRAMLFAISTQAATDNDLFSRWIDDAETSKDPRIVSHIYTAPADCELDDREAWAA 237

Query: 273 YGLDSDVAR 281
                 V R
Sbjct: 238 ANPALGVFR 246


>gi|77464192|ref|YP_353696.1| DNA helicase [Rhodobacter sphaeroides 2.4.1]
 gi|77388610|gb|ABA79795.1| Possible DNA helicase [Rhodobacter sphaeroides 2.4.1]
          Length = 1715

 Score = 44.6 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 43/345 (12%), Positives = 88/345 (25%), Gaps = 35/345 (10%)

Query: 10   KLEQELHEMLMHAECVLSFKN-----FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64
              E+ L  +         +       F+ R+ P   +G  L   +    W  + +E +  
Sbjct: 1043 YAEKGLERIEEAVRLSEDYFALDQESFLRRWMP--GRGVELRRQTTGKAW-KQIVEDLGN 1099

Query: 65   HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS-TRPGMS-IICIANSETQLKN 122
                 +   +       + AG G GKT +    + +L+   R     I+ ++ +      
Sbjct: 1100 PVQQEIVADDREETNVLVLAGPGSGKTRVLVHRIAYLLRVKREDPRGILVLSYNRHAAAE 1159

Query: 123  TLWAEVSKWLSMLPHRHWFEMQSLSLHP-----SGWYAELLEQSMGIDSKHYTITCRTYS 177
                                  +L++       +G  AE  +    +      I     S
Sbjct: 1160 IRARLRHLVGEDAARVTVSTCHALAMRLVGASFTGGTAEQHDFQDVLREAVRQINGEGLS 1219

Query: 178  EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG----FFTELNPNRFWIMTSNTRRL 233
                +            +  DE           I         + +              
Sbjct: 1220 RTEAEAQREALIQGYRWILVDEYQDIGREEYDLIAAVAGRSLEDPDQRLSLFAVG---DD 1276

Query: 234  NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV---ARIEILGQFPQ 290
            +   Y      +   +R++ D R      +  +          + V   AR  +  + P 
Sbjct: 1277 DQNIYAFNGASVSYIRRFEEDYRARPKFLTENYRSTRHIVEAANQVIEPARGRMKARHPI 1336

Query: 291  QEVN--NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTV 333
                  +  P      AM+R          +   D+A    D T 
Sbjct: 1337 TVDKMRSLYPGG---GAMARHDPVGQGR--VQFLDVA---ADDTA 1373


>gi|283768970|ref|ZP_06341876.1| DEAD/DEAH box helicase [Bulleidia extructa W1219]
 gi|283104327|gb|EFC05704.1| DEAD/DEAH box helicase [Bulleidia extructa W1219]
          Length = 891

 Score = 44.2 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 33/270 (12%), Positives = 69/270 (25%), Gaps = 46/270 (17%)

Query: 42  GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101
              L+       +Q + ++    +             K  I A  G GKTTL        
Sbjct: 7   DNHLQFKGAFRDYQKKILDQATTYLKDK---------KIHIVAPPGSGKTTLG-----IE 52

Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWL----------SMLPHRHWFEMQSLSLHPS 151
           +  R G   + I+     ++N     + +            S++ +     +   +L  +
Sbjct: 53  LIRRLGKRALIISPRLV-IRNQWIQRIEEAFLLDHSITLSTSLVENSDITSITYQTLFSA 111

Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211
               +  E+               YS+                +  DE         K++
Sbjct: 112 MTRFKGEERDDQETDDVVEKNEVDYSQFDF--IKNIKENPIEVICLDECHHLHKEWWKAL 169

Query: 212 LGFFTELNPN--RFWIMTSNTRRLNGWFYDIFNIPLEDWKRY--QIDTRTVEGIDSGFHE 267
             F + +  +      +T+            ++    +W RY         E       +
Sbjct: 170 EEFISTIGRDHVTIISLTATPP---------YDAQKSEWNRYIQMCGEVDEEISIPELVK 220

Query: 268 GIISRYGLDSDVARIEILGQFPQQEVNNFI 297
                   D       +L  +P       I
Sbjct: 221 EKNLCPHQD------YVLFSYPTANERKVI 244


>gi|229493797|ref|ZP_04387575.1| RecB family nuclease, family protein [Rhodococcus erythropolis
           SK121]
 gi|229319296|gb|EEN85139.1| RecB family nuclease, family protein [Rhodococcus erythropolis
           SK121]
          Length = 1147

 Score = 44.2 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 23/201 (11%), Positives = 51/201 (25%), Gaps = 11/201 (5%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            A+    G GKT   A ++  LI       I  +A S + ++N L   +   +       
Sbjct: 770 VAVQGPPGTGKTYTGARVVKTLIEQH-HWRIGVVAQSHSVVENMLGGILKAGVDPALVAK 828

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                  +        E        +     I    +     D            +  DE
Sbjct: 829 KGSRSKTAEWQDIASEEYAGFIAEAEGVGCVIGGTAWDFSNTDR---VPAGSLDLLVVDE 885

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
           A         ++          R  ++  + ++L          P+++            
Sbjct: 886 AGQF------ALANTIAVAISARNLLLLGDPQQLPQVSQGTHPEPVDE-SALGWLAEGHG 938

Query: 260 GIDSGFHEGIISRYGLDSDVA 280
            +       +   + +  D+ 
Sbjct: 939 ALPPELGYFLEKTWRMHPDLC 959


>gi|146279552|ref|YP_001169710.1| hypothetical protein Rsph17025_3535 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557793|gb|ABP72405.1| hypothetical protein Rsph17025_3535 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 815

 Score = 44.2 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 19/194 (9%), Positives = 52/194 (26%), Gaps = 12/194 (6%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
               +P  +Q+  + A                 +  +    G GKT     ++       
Sbjct: 161 GSGKEPRYYQINAVNAAIEAIARGN-------RRVLLVMATGTGKTYTAFQIIWRYRQAF 213

Query: 106 PGMSIICIANSETQLKNTL---WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
           PG  ++ +A+    +  T+   +   S  ++ L  +     ++             ++ +
Sbjct: 214 PGKRVLFLADRNVLIDQTMVNDFRPFSGKMAKLSTQAKTIERADGSTVDLPLGLDRKRRI 273

Query: 163 GIDSKHYTITCRTYSEERPDT--FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220
               + Y    +  +    +   F          +  DE        + +        + 
Sbjct: 274 DPSYEIYLGLYQAITGPAEEDKIFRELSRDFFDLIIIDECHRGSAAEDSAWREILDHFSG 333

Query: 221 NRFWIMTSNTRRLN 234
                MT+  +   
Sbjct: 334 AVQIGMTATPKETE 347


>gi|321265233|ref|XP_003197333.1| member of the DEAH family of helicases; Mph1p [Cryptococcus gattii
           WM276]
 gi|317463812|gb|ADV25546.1| Member of the DEAH family of helicases, putative; Mph1p
           [Cryptococcus gattii WM276]
          Length = 1517

 Score = 44.2 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 60/186 (32%), Gaps = 25/186 (13%)

Query: 49  SQP-HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107
           + P   +Q E +                 +    ++   G+GKT +   +ML      P 
Sbjct: 280 NHPKRDYQFEIIRN-------------CFLDNTLVALPTGLGKTFVAGVVMLNFYRWFPT 326

Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
             I+ +A +           V++ +           +  ++      A    + +  + +
Sbjct: 327 GKIVFLAPTR--------PLVAQQIEACQLSCGIPSRDAAVMTGEGGARKGRERLWEEKR 378

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP-DIINKSILGFFTELNPNRFWIM 226
            +  T +T   +  +  V P     + V  DEA     +    +I+ + T  +P    + 
Sbjct: 379 VFYCTPQTLDNDLKNGAVDP--QDIVLVVLDEAHKATGNYAYTTIVAYLTAHHPYFRVLA 436

Query: 227 TSNTRR 232
            + T  
Sbjct: 437 LTATPG 442


>gi|227431755|ref|ZP_03913782.1| terminase large subunit [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227352438|gb|EEJ42637.1| terminase large subunit [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 598

 Score = 44.2 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 33/270 (12%), Positives = 70/270 (25%), Gaps = 28/270 (10%)

Query: 86  RGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           R  GKTTL + +  ++       G  I  +AN   Q +  L+ E  K +   P  +   +
Sbjct: 147 RKNGKTTLISGLASYMAGFDNEKGAQIYALANRADQSR-LLFEETGKMIKASPFLNDRFV 205

Query: 144 QSLSLHPSGWYAELLEQSMGIDSK-----------HYTITCRTYSEERPDTFVGPHNTHG 192
                        +++      S                  + YS            +  
Sbjct: 206 TKNKEIDYPKTESVIKALSAEKSGKDGYNTHMAVFDEIHEYKDYSLINVMRNSMGMRSQP 265

Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
           M ++   A    +     ++                N      ++Y        +    +
Sbjct: 266 MTIYITTAGYELNGPLVEMIAT-----ARGVLSHYENNENERTFYYLAAMDSENEIDDPE 320

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDV------ARIEILGQFPQQEVNNFIPHNYIEEAM 306
           +  +            ++S +     V         ++   F +    +F  +  I    
Sbjct: 321 LWIKANPNFPMMQGLNMLSSWKSSRRVPGEKLDWITKVFNIFSESSELSFFDNETILSNA 380

Query: 307 SREAIDDLYA--PLIMGCDIAGEGGDKTVV 334
                 D       + G D++    D T V
Sbjct: 381 ENHIDLDELKLIRPVAGFDLSET-EDFTAV 409


>gi|226307591|ref|YP_002767551.1| hypothetical protein RER_41040 [Rhodococcus erythropolis PR4]
 gi|226186708|dbj|BAH34812.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 1147

 Score = 44.2 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 23/201 (11%), Positives = 51/201 (25%), Gaps = 11/201 (5%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            A+    G GKT   A ++  LI       I  +A S + ++N L   +   +       
Sbjct: 770 VAVQGPPGTGKTYTGARVVKTLIEQHQ-WRIGVVAQSHSVVENMLGGILKAGVDPALVAK 828

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                  +        E        +     I    +     D            +  DE
Sbjct: 829 KGSRSKTAEWQDIASEEYAGFIAEAEGVGCVIGGTAWDFANTDR---VPAGSLDLLVVDE 885

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
           A         ++          R  ++  + ++L          P+++            
Sbjct: 886 AGQF------ALANTIAVAISARNLLLLGDPQQLPQVSQGTHPEPVDE-SALGWLAEGHG 938

Query: 260 GIDSGFHEGIISRYGLDSDVA 280
            +       +   + +  D+ 
Sbjct: 939 ALPPELGYFLEKTWRMHPDLC 959


>gi|294661382|ref|YP_003573258.1| hypothetical protein Aasi_1916 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|227336533|gb|ACP21130.1| hypothetical protein Aasi_1916 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 575

 Score = 44.2 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 24/229 (10%), Positives = 55/229 (24%), Gaps = 24/229 (10%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
            F+QP   Q + +         ++            SA  G GKT   A  ++  + + P
Sbjct: 21  SFTQPTAIQAKAI--PLALQQKDILG----------SAQTGTGKTLAFAIPLINKLLSDP 68

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
               + +  +          E+++ ++   ++  F+   +            +Q   + S
Sbjct: 69  TSMGLILTPT---------RELAQQVATNINQLLFKSSFIKTALLIGGEPYNKQLAQLRS 119

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL---NPNRF 223
               I                +      +  DE     D+     L              
Sbjct: 120 NLRIIIGTPGRVIDHLERGSFNPKDIDFLILDETDRMFDMGFSIQLEQIVSQLPTQRQTL 179

Query: 224 WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISR 272
               +   ++          P   +         V    +     I   
Sbjct: 180 MFSATFPPKVEKLAAKYMQSPERIFMNEFDSMAIVAQNLTQEILEIKEE 228


>gi|257125975|ref|YP_003164089.1| type III restriction protein res subunit [Leptotrichia buccalis
           C-1013-b]
 gi|257049914|gb|ACV39098.1| type III restriction protein res subunit [Leptotrichia buccalis
           C-1013-b]
          Length = 1090

 Score = 44.2 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 51/185 (27%), Gaps = 13/185 (7%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P+  Q   +E +     +          K  + +  G GKT L A  +            
Sbjct: 298 PNSMQKRVLEKLKETRENGNK-------KGLVISATGTGKTYLAAMDIKQFFEINSNNKN 350

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
                +E + K +    +          +   + S  L         +   +   +K   
Sbjct: 351 KLFEINEKKSKISNIKFLFIAHREELLENAMNVFSRILKIDKNKFGRIYGGLKEINKSMI 410

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
                      + F   HN     +  DE       ++ S L   +         +T+  
Sbjct: 411 FASIQSLRNCYNEFK--HNF-FDYIIVDEFH---HSMSDSYLKTLSYFQSKFLLGLTATP 464

Query: 231 RRLNG 235
           +R++G
Sbjct: 465 KRMDG 469


>gi|117619977|ref|YP_858693.1| multidrug transporter membrane component/ATP-binding component
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117561384|gb|ABK38332.1| ABC transporter ATP-binding protein YojI [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 552

 Score = 44.2 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 62/207 (29%), Gaps = 18/207 (8%)

Query: 19  LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS-------NVN 71
           L+ A+        +    P      PL   S P  WQ   +E V  H           +N
Sbjct: 289 LLSAQVAFDKIAALNLAAP--DADFPL--PSAPRGWQRIELEQVSFHYQGEGGFAVGPIN 344

Query: 72  NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN--SETQLKNTLWAEVS 129
            +     +  I  G G GK+TL   M+L  +       I+      ++      L++ + 
Sbjct: 345 LTIEKGEQIFIIGGNGSGKSTLA--MLLTGLYQPVAGRILLDGEPVTDRNAYLALFSAIF 402

Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS-MGIDSKHYTITCRTYSEERPDTFVGPH 188
               +   +H    +      + W   L   S + I+         +  + +    +   
Sbjct: 403 TDYHLF--QHLLGPEPKDELVAEWLERLQMGSKLTIEDGFIADIDLSQGQRKRVALLLAL 460

Query: 189 NTHGMAVFNDEASGTPDIINKSILGFF 215
                 +  DE +   D   + I    
Sbjct: 461 AEQREVMLFDEWAADQDPQFRRIFYQL 487


>gi|126463981|ref|YP_001045094.1| EcoEI R domain-containing protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105792|gb|ABN78322.1| EcoEI R, C-terminal domain protein [Rhodobacter sphaeroides ATCC
           17029]
          Length = 815

 Score = 44.2 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 19/194 (9%), Positives = 52/194 (26%), Gaps = 12/194 (6%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
               +P  +Q+  + A                 +  +    G GKT     ++       
Sbjct: 161 GSGKEPRYYQINAVNAAIEAIARGD-------RRVLLVMATGTGKTYTAFQIIWRYRQAF 213

Query: 106 PGMSIICIANSETQLKNTL---WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
           PG  ++ +A+    +  T+   +   S  ++ L  +     ++             ++ +
Sbjct: 214 PGKRVLFLADRNVLIDQTMVNDFRPFSGKMAKLSTQAKTIERADGSTVDLPLGLDRKRRI 273

Query: 163 GIDSKHYTITCRTYSEERPDT--FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220
               + Y    +  +    +   F          +  DE        + +        + 
Sbjct: 274 DPSYEIYLGLYQAITGPAEEDKIFREFSRDFFDLIIIDECHRGSAAEDSAWREILDHFSG 333

Query: 221 NRFWIMTSNTRRLN 234
                MT+  +   
Sbjct: 334 AVQIGMTATPKETE 347


>gi|9632517|ref|NP_049511.1| putative large subunit terminase [Enterobacteria phage 933W]
 gi|9633446|ref|NP_050549.1| hypothetical protein VT2-Sap52 [Enterobacteria phage VT2-Sakai]
 gi|15800970|ref|NP_286986.1| partial putative terminase large subunit of bacteriophage BP-933W
           [Escherichia coli O157:H7 EDL933]
 gi|15830474|ref|NP_309247.1| terminase large subunit [Escherichia coli O157:H7 str. Sakai]
 gi|20065962|ref|NP_612880.1| hypothetical protein Stx2Ip001 [Stx2 converting phage I]
 gi|116222005|ref|YP_794060.1| putative terminase large subunit [Stx2-converting phage 86]
 gi|195935756|ref|ZP_03081138.1| putative terminase large subunit [Escherichia coli O157:H7 str.
           EC4024]
 gi|208806515|ref|ZP_03248852.1| large subunit terminase [Escherichia coli O157:H7 str. EC4206]
 gi|208814205|ref|ZP_03255534.1| large subunit terminase [Escherichia coli O157:H7 str. EC4045]
 gi|208821209|ref|ZP_03261529.1| large subunit terminase [Escherichia coli O157:H7 str. EC4042]
 gi|209397398|ref|YP_002271783.1| large subunit terminase [Escherichia coli O157:H7 str. EC4115]
 gi|254794261|ref|YP_003079098.1| terminase large subunit of bacteriophage BP-933W [Escherichia coli
           O157:H7 str. TW14359]
 gi|260844956|ref|YP_003222734.1| putative terminase large subunit [Escherichia coli O103:H2 str.
           12009]
 gi|302393082|ref|YP_003828912.1| terminase, large subunit [Stx2 converting phage II]
 gi|302861123|ref|YP_003848824.1| terminase, large subunit [Stx1 converting phage]
 gi|4585428|gb|AAD25456.1|AF125520_51 putative large subunit terminase [Enterobacteria phage 933W]
 gi|12514329|gb|AAG55597.1|AE005297_7 partial putative terminase large subunit of bacteriophage BP-933W
           [Escherichia coli O157:H7 str. EDL933]
 gi|5881642|dbj|BAA84333.1| hypothetical protein [Enterobacteria phage VT2-Sakai]
 gi|13360680|dbj|BAB34643.1| putative terminase large subunit [Escherichia coli O157:H7 str.
           Sakai]
 gi|19911754|dbj|BAB88014.1| hypothetical protein [Stx2 converting phage I]
 gi|32128179|dbj|BAC77983.1| hypothetical protein [Stx1 converting phage]
 gi|32128351|dbj|BAC78154.1| hypothetical protein [Stx2 converting phage II]
 gi|115500815|dbj|BAF34045.1| putative terminase large subunit [Stx2-converting phage 86]
 gi|208726316|gb|EDZ75917.1| large subunit terminase [Escherichia coli O157:H7 str. EC4206]
 gi|208735482|gb|EDZ84169.1| large subunit terminase [Escherichia coli O157:H7 str. EC4045]
 gi|208741332|gb|EDZ89014.1| large subunit terminase [Escherichia coli O157:H7 str. EC4042]
 gi|209158798|gb|ACI36231.1| large subunit terminase [Escherichia coli O157:H7 str. EC4115]
 gi|254593661|gb|ACT73022.1| terminase large subunit of bacteriophage BP-933W [Escherichia coli
           O157:H7 str. TW14359]
 gi|257760103|dbj|BAI31600.1| putative terminase large subunit [Escherichia coli O103:H2 str.
           12009]
 gi|315274325|gb|ADU03733.1| large subunit terminase [Enterobacteria phage VT2phi_272]
          Length = 568

 Score = 44.2 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 29/290 (10%), Positives = 64/290 (22%), Gaps = 40/290 (13%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEA 61
           PR     +  E E    +M    + +    +   +    +   L  F      Q +   +
Sbjct: 8   PRCDEPSEMTEAEQRLFIMTK--LSNPWWRLNHLYKIQNEKGELVTFRM-RPAQRQLFRS 64

Query: 62  VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121
           +                K  I   R +G +T     +L      P +    +A  +    
Sbjct: 65  MHN--------------KNIILKARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQAAS 110

Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
                +++     LP         +               +            ++     
Sbjct: 111 EIFRTKIAVPFDHLPDWLRASFTIVERRSGASG-----GYILFGHGSSIQVATSFRSGTV 165

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
                  +           +  P    +   G    ++        S    + G FY++ 
Sbjct: 166 QRLHISEHGKI-------CAKYPAKAKELRTGTLNAVSDECIIFDESTAEGVGGDFYEMS 218

Query: 242 NIPLE-----------DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280
           N   E           D+K +           +   E  +          
Sbjct: 219 NRAQEITASGLLLTAQDYKFHFYAWWQDPKYSARVPESGLKLSREKMTYF 268


>gi|300871094|ref|YP_003785966.1| putative phage terminase large subunit [Brachyspira pilosicoli
           95/1000]
 gi|300688794|gb|ADK31465.1| putative phage terminase, large subunit [Brachyspira pilosicoli
           95/1000]
          Length = 590

 Score = 44.2 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 26/199 (13%), Positives = 50/199 (25%), Gaps = 24/199 (12%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS-- 109
             W+   + ++         N      K  +   R  GKTT  + +  +           
Sbjct: 75  ESWEQFIIASI--FGWRRKENKLRRYKKAYVQVSRKNGKTTFASGIGNYCFFCDSPAEAG 132

Query: 110 --IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
             I  IA  + Q K   W+E  + +          +   ++          ++     SK
Sbjct: 133 VEIYYIATKKDQAK-IAWSESERQIRKAK-----ALNKEAITYKQTSTITKKKDTASKSK 186

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIM 226
                  T     P             V  DE    PD  +   +            +I+
Sbjct: 187 PLGQDSNTEDGLNPH-----------LVIVDEYHAHPDNELLNVLESGMGARRQPLTFII 235

Query: 227 TSNTRRLNGWFYDIFNIPL 245
           T+         +  +    
Sbjct: 236 TTAGFDKTSVCFSEYEYAK 254


>gi|294795014|ref|ZP_06760149.1| phage terminase large subunit (GpA) [Veillonella sp. 3_1_44]
 gi|294454376|gb|EFG22750.1| phage terminase large subunit (GpA) [Veillonella sp. 3_1_44]
          Length = 634

 Score = 44.2 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 57/223 (25%), Gaps = 26/223 (11%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            +Q + M+A             P I +  + +   +GK+ +   ++       P  +++ 
Sbjct: 51  PYQKDIMDAFT----------QPGINRVVVKSASQVGKSDIMNNVLGRYAHLDP-CAVMM 99

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           I  +    ++   + +S  +           ++ S   +            +      I 
Sbjct: 100 IQPTIELAQDYSKSRISPMIRDTKVLSQVFYETKSEDGTKTRDGKNTILSKLFPGGRLIM 159

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD------IINKSILGFFTELNPNRFWIM 226
           C        ++  G  +     +  DE    PD                T         +
Sbjct: 160 C------GANSPAGLASRPVRVLLADEVDRFPDSAGTEGDPVDLAAKRMTTFWNRV-MGL 212

Query: 227 TSNTRRLNGWF--YDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267
            S            +      E+W+    +      I     E
Sbjct: 213 FSTPTNEGSSRIDVEYQTGTQEEWQHECPNCGEYHLIRHTEME 255


>gi|227548401|ref|ZP_03978450.1| possible helicase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079445|gb|EEI17408.1| possible helicase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 943

 Score = 44.2 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 51/319 (15%), Positives = 83/319 (26%), Gaps = 60/319 (18%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P+  Q E +E +     +          +  I +  G GKT L+A  +           +
Sbjct: 178 PNLMQTEALENLQRVIDAGE-------RRAIIISATGTGKTILSALAV----RQIKPRRV 226

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + +A+   Q+ N    E  + L+  P    F                       ++    
Sbjct: 227 LFVAH-REQILNKAAEEFQRVLACPPTDIGF-----------------IVGQRKEANQRL 268

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
           +     S  R DT           V  DE         +S          +    +T+  
Sbjct: 269 VFATIQSLGRGDTLSEISPKQFDLVIVDE---VHRSGAESYQKVLNHFRADFTLGLTATP 325

Query: 231 RRLNG-----------WFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279
            R +G            +       LE+      D   V   +S F   I     L    
Sbjct: 326 ERTDGFNVFELFDYNVPYEIRLEDALENHMLVPFDYYGVSDYESAFGSVISDNSTLQQLA 385

Query: 280 ARIEI--------LGQFPQQEVNNFIPHNYIEEAM---SREAIDDLYAPLIMGCDIAGEG 328
           A   +           F +         +  E A              PL     IA  G
Sbjct: 386 APERVHHLAKIIQDYSFARGSKGLIFCSSNAEAAALSKGLNTESVHGRPLRT---IALSG 442

Query: 329 GDKTVVVFRRGNIIEHIFD 347
           GD   +  R  N +E +  
Sbjct: 443 GDS--IETRE-NTVEKLAQ 458


>gi|307150235|ref|YP_003885619.1| DEAD/DEAH box helicase domain-containing protein [Cyanothece sp.
           PCC 7822]
 gi|306980463|gb|ADN12344.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 7822]
          Length = 1004

 Score = 44.2 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 54/209 (25%), Gaps = 19/209 (9%)

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
                    +        + A  G GKT L     ++    R G  +      +      
Sbjct: 21  DQFQKKAITALEQGKSVVVCAPTGSGKT-LVGEYAIYRALAR-GKRVFYTTPLKALSNQK 78

Query: 124 L--WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
              + E       L HR    + +  +  +     ++  +    +            E P
Sbjct: 79  CRDFQEKFGQTPFLAHRVDVGLITGDIVINPDAPIIVMTTEIFRN---------MLYETP 129

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDI-----INKSILGFFTELNPNRFWIMTSNTRRLNGW 236
              VG    +   V  DE     D        +SI+     +          N   L  W
Sbjct: 130 IGEVGTSLENVETVVLDECHYISDSGRGTVWEESIIYCPPTIQLVALSATIGNPEELTDW 189

Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265
                    E+ +  +    T E I+S F
Sbjct: 190 INK-VRQKRENKQFLEQKISTCELINSDF 217


>gi|156395541|ref|XP_001637169.1| predicted protein [Nematostella vectensis]
 gi|156224279|gb|EDO45106.1| predicted protein [Nematostella vectensis]
          Length = 448

 Score = 44.2 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 41/143 (28%), Gaps = 7/143 (4%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE----VSKWLSMLPHRHWFE 142
           G GKT      +L +    P   +I  A S +               +   M+    +  
Sbjct: 44  GTGKTVTLVEAILQVFHRVPSSRVIACAPSNSAADLMAVRLHRSGFIQEGDMIRLNAFQR 103

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
           +Q +    + +  +     +    +    TC T  +         H TH   VF DEA  
Sbjct: 104 VQEIPESINKYCVDTDSLQLAAHYRIIVCTCSTAGQLFSLGLKPGHFTH---VFVDEAGQ 160

Query: 203 TPDIINKSILGFFTELNPNRFWI 225
             +      +G     +      
Sbjct: 161 ATEPECLIPIGLAAGEDGQIILA 183


>gi|145301186|ref|YP_001144027.1| multidrug transporter membrane component/ATP-binding component
           [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853958|gb|ABO92279.1| ABC-type hydroxamate-type ferric siderophore transporter,
           ATP-binding protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 548

 Score = 44.2 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 54/194 (27%), Gaps = 14/194 (7%)

Query: 40  IKGKPLEHFSQPHRWQLEFMEAVDVHCHS-------NVNNSNPTIFKCAISAGRGIGKTT 92
                      P  WQ   +E V  H           +N +     +  I  G G GK+T
Sbjct: 306 EPDPDFPLPPAPRAWQRIQLEQVSFHYQGEGGFAVGPINLTIEKGEQVFIIGGNGSGKST 365

Query: 93  LNAWMMLWLISTRPGMSIICIAN--SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
           L   M+L  +       I+      ++      L++ +     +   +H    +  +   
Sbjct: 366 LA--MLLTGLYQPVSGRILLDGEPVTDRNAYLALFSAIFTDYHLF--QHLLGPEPKAELI 421

Query: 151 SGWYAELLEQS-MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209
           + W   L   S + I+         +  + +    +         +  DE +   D   +
Sbjct: 422 AEWLDRLQMGSKLAIEDNFIADIDLSQGQRKRVALLLALAEQREVMLFDEWAADQDPQFR 481

Query: 210 SILGFFTELNPNRF 223
            I            
Sbjct: 482 RIFYQLLLPRLKAM 495


>gi|261212096|ref|ZP_05926382.1| type III restriction enzyme res subunit [Vibrio sp. RC341]
 gi|260838704|gb|EEX65355.1| type III restriction enzyme res subunit [Vibrio sp. RC341]
          Length = 1046

 Score = 44.2 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 58/196 (29%), Gaps = 29/196 (14%)

Query: 41  KGKPLEHFS-QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99
           +  P   F   P   Q + +E +       V  S    F+  + A  G GKT ++A+   
Sbjct: 309 EASPTYFFDISPFPHQSDILEQLA------VERSVHQRFRNLVVAATGTGKTLISAFDFA 362

Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159
             I  +P  + + +A+ E         E+ K                 L   G   E   
Sbjct: 363 RFIKAKPQANFLFVAHRE---------EILKQARSAYRGVLRNGTFGELWVGGHTPE--- 410

Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
                   +  +     +       +     +   +  DE         +++       +
Sbjct: 411 -------HYRQLFVSIQTMNNQLDQLNLTADYYDYIVIDEVHHIAATSYRAL---LEHFS 460

Query: 220 PNRFWIMTSNTRRLNG 235
           PN    +T+   R +G
Sbjct: 461 PNILLGLTATPERHDG 476


>gi|229826247|ref|ZP_04452316.1| hypothetical protein GCWU000182_01619 [Abiotrophia defectiva ATCC
           49176]
 gi|229789117|gb|EEP25231.1| hypothetical protein GCWU000182_01619 [Abiotrophia defectiva ATCC
           49176]
          Length = 751

 Score = 44.2 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 30/257 (11%), Positives = 69/257 (26%), Gaps = 17/257 (6%)

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE---TQL 120
                         F   +    G GKT   +  +L     +    II IA+ +    Q 
Sbjct: 29  DAMAKLNLIDKEDSFSTLVVLPTGGGKTYTASTWLLKNAVDKK-KKIIWIAHRQMLLDQA 87

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
             +       +   +PH   F         SG  +      +        ++  +     
Sbjct: 88  AESFQK--FAYAEAMPHISEFTY----RIVSGSSSHDRSIDISEKDNILILSKDSIGRNM 141

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI-MTSNTRRLNGWFYD 239
                       + +  DEA        + I+ +  E  PN   + +T+   R       
Sbjct: 142 SVLDKWLKGEKEIYLVIDEAHHATAKTYRKIIKYIEERVPNLKLLGLTATPFRTAKEEEG 201

Query: 240 IFNIPLEDWKRYQIDTRTVEGIDSGFH--EGIISRYGLDSDVARIEILGQFPQQEVNNFI 297
           +     +D               +     + +I+   L + +       ++  ++    +
Sbjct: 202 LLAKIFKDGVDISGSAVKGNLGITYQIGLKELINARILSTPIF----ECKYTDEDFGVNL 257

Query: 298 PHNYIEEAMSREAIDDL 314
             + +E     + + D 
Sbjct: 258 GLDALESIQRLDVLPDE 274


>gi|225555208|gb|EEH03501.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces
            capsulatus G186AR]
          Length = 2017

 Score = 44.2 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 36/155 (23%), Gaps = 24/155 (15%)

Query: 58   FMEAVDVHCHSNVNNSNPTIF--------KCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
             +E +        N     IF           + +  G GKT      M W    +PG  
Sbjct: 1133 ILENIYAQRFQFFNPMQTQIFHTLYHTPANVLLGSPTGSGKTVAAELAMWWAFREKPGSK 1192

Query: 110  IICIANSETQLKNTLWAEVSKWLSML---PHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
            ++ IA  +  ++      V  W   L         E+   +   +    +        + 
Sbjct: 1193 VVYIAPMKALVRER----VQDWRRRLTAPMDLKLVELTGDNTPDTRTIRDADIIITTPEK 1248

Query: 167  KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
                                        V  DE  
Sbjct: 1249 WDGISRSWQTRGYV---------RQVSLVIIDEIH 1274


>gi|119718031|ref|YP_924996.1| type III restriction enzyme, res subunit [Nocardioides sp. JS614]
 gi|119538692|gb|ABL83309.1| type III restriction enzyme, res subunit [Nocardioides sp. JS614]
          Length = 1033

 Score = 44.2 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 74/270 (27%), Gaps = 34/270 (12%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS- 109
           P+ +Q + ++ +      +V  +     +  + A  G GKT + A     L    PG   
Sbjct: 313 PYAYQQKMLDDL------DVERTIRGRHRNLVVAATGTGKTVVAALDYRRLAGHTPGRRP 366

Query: 110 -IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            ++ +A+    L+ +                        +   G + E        +   
Sbjct: 367 TLLFVAHRAEILEQS------------------RRTYREVLADGSFGESWYGGTRPERGE 408

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
           +                         V  DE         + I+   T   P     +T+
Sbjct: 409 HVFASV--QSLHSYGIHQIPPDAFDVVVIDEFHHAEAPTYRRIIEHLT---PRELLGLTA 463

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
              R +G     F       +    D    + +    +  +     L +   R    G++
Sbjct: 464 TPERTDGTDVRDFFDGRIATELRLWDALESDLLCPFHYFAVADNTDLSAITWRR---GRY 520

Query: 289 PQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
              E+ N    N    A+    ++D    L
Sbjct: 521 DDAELENLYTGNDARAAIVLRELNDKVGNL 550


>gi|116620801|ref|YP_822957.1| superfamily I DNA/RNA helicase [Candidatus Solibacter usitatus
            Ellin6076]
 gi|116223963|gb|ABJ82672.1| Superfamily I DNA and RNA helicases and helicase subunits-like
            protein [Candidatus Solibacter usitatus Ellin6076]
          Length = 1586

 Score = 44.2 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 47/154 (30%), Gaps = 7/154 (4%)

Query: 57   EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA-WMMLWLISTRPGMSIICIAN 115
            E   ++      ++    P   +  +    G GKTT  A  ++L L++      ++ +A 
Sbjct: 1093 ERFRSLGHDEKYDMKAGLPENIEF-VFGPPGTGKTTHLAERVLLPLMNGAEPARVLVLAP 1151

Query: 116  SETQLKNTLWAEVSKWLSMLPHRHW---FEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            +       +   +    +   ++ W   F   S                +   S+   +T
Sbjct: 1152 TNKAADVLIARILDAMGTDTSNKEWLVRFGTSSDERIERAGVWRDRSFDIFGLSRSVVVT 1211

Query: 173  --CRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
               R   +         +      +  DEAS  P
Sbjct: 1212 TVARFAYDGFTANEGRLYEIDWDVIVMDEASMIP 1245


>gi|298675127|ref|YP_003726877.1| DEAD/DEAH box helicase domain-containing protein [Methanohalobium
           evestigatum Z-7303]
 gi|298288115|gb|ADI74081.1| DEAD/DEAH box helicase domain protein [Methanohalobium evestigatum
           Z-7303]
          Length = 1607

 Score = 44.2 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 33/289 (11%), Positives = 65/289 (22%), Gaps = 38/289 (13%)

Query: 60  EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST-------RPGMSIIC 112
             +  H    + N         ++ G G GKT +    +L  +          PG+  + 
Sbjct: 87  RPLYKHQEKAIRNIINKNKNAVVATGTGSGKTEIFMITILNYLFKQQENSELGPGVRALL 146

Query: 113 IANSETQLKNTLWA------------------EVSKWLSMLPHRHWFEMQSLSLHPSGWY 154
           +        + L                    E  +       ++        L      
Sbjct: 147 LYPMNALANDQLKRMRTLLKNCPEITFGRYTGETEENYRSARDKYKQMYHEEPLDNEFIS 206

Query: 155 AELLEQSMGI--DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212
            + ++++      + +  +            F G +      +  DEA          I 
Sbjct: 207 RDKMKETPPHILLTNYAMLEYLMLRPSDHIFFDGSYADDWKFIVLDEAHTYDGAKGIEIS 266

Query: 213 GFFTELNPN--------RFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264
                L              I TS T   +   +               D   V      
Sbjct: 267 MLIRRLKDRVVGNIPGEIKCIATSATLGNSDSDFKDVADFSNKLFGEHFDENDV-IGPER 325

Query: 265 FHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
             E     +G  S +          Q + +       IE  ++     D
Sbjct: 326 KIENFDGSWGKPSYLLYQSWQDIINQNDTDKI--TALIESGVNHNVPVD 372


>gi|109638534|ref|YP_656697.1| ORF42 [Ranid herpesvirus 1]
 gi|109138302|gb|ABG25767.1| ORF42 [Ranid herpesvirus 1]
          Length = 742

 Score = 44.2 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 16/155 (10%), Positives = 43/155 (27%), Gaps = 9/155 (5%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GK+T+   +++   +    + ++  A+        L+  + + +  +    WF   
Sbjct: 179 PRRCGKSTML-EIIMAGAALFLEIDVLIQAHRNPT-CLALYNRMEQRVGAMQSAPWF--- 233

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                          ++   +S  +    +                +   V  DEA+   
Sbjct: 234 --PKDFKITTVRGDLENHEYESAPHAREGKAVFHFLASGANTARGQNPDLVIVDEAAFIC 291

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
                S++         +    T++      W   
Sbjct: 292 MPALLSLIPLMAIDGTKQIH--TTSPVDAGAWISR 324


>gi|86609851|ref|YP_478613.1| helicase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558393|gb|ABD03350.1| putative helicase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 802

 Score = 44.2 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 73/278 (26%), Gaps = 24/278 (8%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             + A  G GKT L     ++   ++ G  +         L N  + +  +         
Sbjct: 40  VVVCAPTGSGKT-LIGEYAIYRALSQ-GKRVFYTTP-LKALSNQKFRDFGQQFGPERVGL 96

Query: 140 WF-EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT-----HGM 193
              ++      P       + ++M   +       R    ER D                
Sbjct: 97  LTGDISINRDAPVLVMTTEIFRNMLYGTPISLAVQRYAYGERDDGTEFSEGEVDPLRDVQ 156

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFW-IMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
           AV  DE     D    ++        P     I  S T   +    D  N          
Sbjct: 157 AVILDECHYMNDQQRGTVWEEAIIYCPPTIQLIALSATLANSDQLTDWMNQVHGPTHLID 216

Query: 253 IDTRTVE----GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI----EE 304
            + R V       +      ++ +      V    +  + P     ++     I    E 
Sbjct: 217 SNHRPVPLQFHFANRKGLFPLLEQTESGQWVRNRRLKSKRPNSHEPSWAGVPDIAQVLEN 276

Query: 305 AMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNII 342
              R+ +    A   +    + +G D  V   R  +++
Sbjct: 277 LRQRDMLP---AIYFI---FSRKGCDMAVASVRDLDLV 308


>gi|156603923|ref|YP_001429870.1| putative terminase large subunit [Staphylococcus phage tp310-1]
 gi|156604053|ref|YP_001429998.1| terminase large subunit [Staphylococcus phage tp310-3]
 gi|154818009|gb|ABS87437.1| putative terminase large subunit [Staphylococcus phage tp310-1]
 gi|154818139|gb|ABS87565.1| terminase large subunit [Staphylococcus phage tp310-3]
          Length = 564

 Score = 44.2 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 27/283 (9%), Positives = 76/283 (26%), Gaps = 55/283 (19%)

Query: 82  ISAGRGIGKTTLNAWM----MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
           IS  R  GK+ + + M    +L+    +    I   +++  Q +   +   S+ ++++  
Sbjct: 96  ISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQTI-FKMASQQVNLMRS 154

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
           +  F  +   +          +  +            +      +               
Sbjct: 155 KSKFIREKTDVR---------KTDIEDVLSSSVFAPLS------NNPDAVDGKDPTVAIL 199

Query: 198 DEASGTPDIINKSILGF-FTELNPNRFWIMTSNTRRLNGWFYDIF--------------- 241
           DE +  PD    S      T        ++++    LN   Y  +               
Sbjct: 200 DELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEEVRADN 259

Query: 242 -----------NIPLEDWKRYQID----TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
                          ++ K  +      ++          +  I             ++ 
Sbjct: 260 YFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADIQDELEKGTSYHKILIK 319

Query: 287 QFP---QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAG 326
            F     Q  ++ +  +  E+ ++     +    + +G D++ 
Sbjct: 320 NFNLWQAQREDSLLDISDWEQVITPMPNIN-GKDVYIGVDLSR 361


>gi|239507398|ref|YP_002939709.1| terminase large subunit [Staphylococcus phage phiPVL-CN125]
 gi|238684023|gb|ACR54226.1| terminase large subunit [Staphylococcus phage phiPVL-CN125]
          Length = 564

 Score = 44.2 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 27/283 (9%), Positives = 76/283 (26%), Gaps = 55/283 (19%)

Query: 82  ISAGRGIGKTTLNAWM----MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
           IS  R  GK+ + + M    +L+    +    I   +++  Q +   +   S+ ++++  
Sbjct: 96  ISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQTI-FKMASQQVNLMRS 154

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
           +  F  +   +          +  +            +      +               
Sbjct: 155 KSKFIREKTDVR---------KTDIEDVLSSSVFAPLS------NNPDAVDGKDPTVAIL 199

Query: 198 DEASGTPDIINKSILGF-FTELNPNRFWIMTSNTRRLNGWFYDIF--------------- 241
           DE +  PD    S      T        ++++    LN   Y  +               
Sbjct: 200 DELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEGVRADN 259

Query: 242 -----------NIPLEDWKRYQID----TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
                          ++ K  +      ++          +  I             ++ 
Sbjct: 260 YFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADIQDELEKGTSYHKILIK 319

Query: 287 QFP---QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAG 326
            F     Q  ++ +  +  E+ ++     +    + +G D++ 
Sbjct: 320 NFNLWQAQREDSLLDISDWEQVITPMPNIN-GKDVYIGVDLSR 361


>gi|121714645|ref|XP_001274933.1| DEAD/DEAH box helicase, putative [Aspergillus clavatus NRRL 1]
 gi|119403087|gb|EAW13507.1| DEAD/DEAH box helicase, putative [Aspergillus clavatus NRRL 1]
          Length = 2007

 Score = 44.2 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 19/155 (12%), Positives = 39/155 (25%), Gaps = 18/155 (11%)

Query: 55   QLEFMEAVDVHCHSNVNNSNPTIF--------KCAISAGRGIGKTTLNAWMMLWLISTRP 106
            Q   +E +        N     IF           + +  G GKT      M W    +P
Sbjct: 1127 QNPILEELYGQRFQFFNPMQTQIFHMLYHTSANVLLGSPTGSGKTVAAELAMWWAFREKP 1186

Query: 107  GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
            G  ++ IA  +  ++  +     +    +  +   E+   +   +    +        + 
Sbjct: 1187 GSKVVYIAPMKALVRERVQDWGKRLTGPMGLK-LVELTGDNTPDTRTIRDADIIITTPEK 1245

Query: 167  KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
                       +                V  DE  
Sbjct: 1246 WDGISRSWQTRDYV---------RKVSLVIIDEIH 1271


>gi|9635715|ref|NP_061628.1| phi PVL ORF 2 homologue [Staphylococcus prophage phiPV83]
 gi|21283637|ref|NP_646725.1| hypothetical protein MW1908 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|29028696|ref|NP_803384.1| terminase-large subunit [Staphylococcus phage phi13]
 gi|49486784|ref|YP_044005.1| putative terminase-large subunit [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|88195871|ref|YP_500681.1| phage terminase large subunit [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|119443690|ref|YP_918928.1| phage terminase-large subunit [Staphylococcus phage phiPVL108]
 gi|257425574|ref|ZP_05601998.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257436471|ref|ZP_05612515.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus
           M876]
 gi|258443264|ref|ZP_05691609.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|282914770|ref|ZP_06322553.1| terminase large subunit [Staphylococcus aureus subsp. aureus M899]
 gi|282924546|ref|ZP_06332214.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus
           C101]
 gi|293503332|ref|ZP_06667179.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293530883|ref|ZP_06671565.1| terminase large subunit [Staphylococcus aureus subsp. aureus M1015]
 gi|297208777|ref|ZP_06925203.1| bacteriophage terminase large subunit [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300912942|ref|ZP_07130380.1| bacteriophage terminase large subunit [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|8918785|dbj|BAA97845.1| phi PVL ORF 2 homologue [Staphylococcus prophage phiPV83]
 gi|18920620|gb|AAL82359.1| terminase-large subunit [Staphylococcus phage phi13]
 gi|21205078|dbj|BAB95773.1| hypothetical protein [Staphylococcus aureus subsp. aureus MW2]
 gi|49245227|emb|CAG43697.1| putative terminase-large subunit [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|87203429|gb|ABD31239.1| phage terminase, large subunit, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|119225816|dbj|BAF41187.1| phage terminase-large subunit [Staphylococcus phage phiPVL108]
 gi|257271268|gb|EEV03414.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257283822|gb|EEV13945.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus
           M876]
 gi|257851553|gb|EEV75490.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|282167139|gb|ADA81155.1| Terminase large subunit, phage associated [Staphylococcus phage
           SAP090B]
 gi|282313381|gb|EFB43776.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus
           C101]
 gi|282321332|gb|EFB51660.1| terminase large subunit [Staphylococcus aureus subsp. aureus M899]
 gi|290920151|gb|EFD97217.1| terminase large subunit [Staphylococcus aureus subsp. aureus M1015]
 gi|291094998|gb|EFE25263.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus
           58-424]
 gi|296886584|gb|EFH25491.1| bacteriophage terminase large subunit [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300885720|gb|EFK80927.1| bacteriophage terminase large subunit [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|320139651|gb|EFW31520.1| hypothetical protein HMPREF9528_02025 [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|329728606|gb|EGG65036.1| putative phage terminase, large subunit [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 564

 Score = 44.2 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 27/283 (9%), Positives = 76/283 (26%), Gaps = 55/283 (19%)

Query: 82  ISAGRGIGKTTLNAWM----MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
           IS  R  GK+ + + M    +L+    +    I   +++  Q +   +   S+ ++++  
Sbjct: 96  ISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQTI-FKMASQQVNLMRS 154

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
           +  F  +   +          +  +            +      +               
Sbjct: 155 KSKFIREKTDVR---------KTDIEDVLSSSVFAPLS------NNPDAVDGKDPTVAIL 199

Query: 198 DEASGTPDIINKSILGF-FTELNPNRFWIMTSNTRRLNGWFYDIF--------------- 241
           DE +  PD    S      T        ++++    LN   Y  +               
Sbjct: 200 DELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEEVRADN 259

Query: 242 -----------NIPLEDWKRYQID----TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
                          ++ K  +      ++          +  I             ++ 
Sbjct: 260 YFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADIQDELEKGTSYHKILIK 319

Query: 287 QFP---QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAG 326
            F     Q  ++ +  +  E+ ++     +    + +G D++ 
Sbjct: 320 NFNLWQAQREDSLLDISDWEQVITPMPNIN-GKDVYIGVDLSR 361


>gi|301607561|ref|XP_002933376.1| PREDICTED: probable ATP-dependent RNA helicase DDX60-like [Xenopus
            (Silurana) tropicalis]
          Length = 1780

 Score = 44.2 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 66/238 (27%), Gaps = 27/238 (11%)

Query: 51   PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
            P  WQ + ++ VD +  +             I A    GKT  + + M  ++S      +
Sbjct: 871  PDTWQRKLLDVVDNNESA------------VIVAPTSSGKTYASYYCMQKVLSQGHEGVV 918

Query: 111  ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
            + ++ ++  +   +   ++++   LP+           + +      +  ++        
Sbjct: 919  VYVSPTKALVNQVVTTVMNQFNKNLPNGVALCGVFTRDYRTDALNSQILVTV-----PQC 973

Query: 171  ITCRTYSEERPDTFVGPHNTHGMAVFNDEAS----GTPDIINKSILGFFTELNPNRFWIM 226
            +     S  R +            V  DE           + + +L              
Sbjct: 974  LEILLLSPHRQEWAKRIK-----YVIFDEIHCLGGEIGAEVWEHLLVMIRCP-FLALSAT 1027

Query: 227  TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
             SN   L  W   +     +  K  + +          + +     Y +   +     
Sbjct: 1028 ISNPEHLTEWLQSVKFYWQKRDKLIEENWTEKGAKAKAYKKKEKMSYRVHLVLYNKRY 1085


>gi|282926109|ref|ZP_06333754.1| phage terminase, large subunit [Staphylococcus aureus A9765]
 gi|282592354|gb|EFB97370.1| phage terminase, large subunit [Staphylococcus aureus A9765]
          Length = 564

 Score = 44.2 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 27/283 (9%), Positives = 76/283 (26%), Gaps = 55/283 (19%)

Query: 82  ISAGRGIGKTTLNAWM----MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
           IS  R  GK+ + + M    +L+    +    I   +++  Q +   +   S+ ++++  
Sbjct: 96  ISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQTI-FKMASQQVNLMRS 154

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
           +  F  +   +          +  +            +      +               
Sbjct: 155 KSKFIREKTDVR---------KTDIEDVLSSSVFAPLS------NNPDAVDGKDPTVAIL 199

Query: 198 DEASGTPDIINKSILGF-FTELNPNRFWIMTSNTRRLNGWFYDIF--------------- 241
           DE +  PD    S      T        ++++    LN   Y  +               
Sbjct: 200 DELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEEVRADN 259

Query: 242 -----------NIPLEDWKRYQID----TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
                          ++ K  +      ++          +  I             ++ 
Sbjct: 260 YFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADIQDELEKGTSYHKILIK 319

Query: 287 QFP---QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAG 326
            F     Q  ++ +  +  E+ ++     +    + +G D++ 
Sbjct: 320 NFNLWQAQREDSLLDISDWEQVITPMPNIN-GKDVYIGVDLSR 361


>gi|9635167|ref|NP_058441.1| hypothetical protein PVL_02 [Staphylococcus phage PVL]
 gi|3341909|dbj|BAA31875.1| unnamed protein product [Staphylococcus phage PVL]
          Length = 564

 Score = 44.2 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 27/283 (9%), Positives = 76/283 (26%), Gaps = 55/283 (19%)

Query: 82  ISAGRGIGKTTLNAWM----MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
           IS  R  GK+ + + M    +L+    +    I   +++  Q +   +   S+ ++++  
Sbjct: 96  ISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQTI-FKMASQQVNLMRS 154

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
           +  F  +   +          +  +            +      +               
Sbjct: 155 KSKFIREKTDVR---------KTDIEDVLSSSVFAPLS------NNPDAVDGKDPTVAIL 199

Query: 198 DEASGTPDIINKSILGF-FTELNPNRFWIMTSNTRRLNGWFYDIF--------------- 241
           DE +  PD    S      T        ++++    LN   Y  +               
Sbjct: 200 DELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEEVRADN 259

Query: 242 -----------NIPLEDWKRYQID----TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
                          ++ K  +      ++          +  I             ++ 
Sbjct: 260 YFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADIQDELEKGTSYHKILIK 319

Query: 287 QFP---QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAG 326
            F     Q  ++ +  +  E+ ++     +    + +G D++ 
Sbjct: 320 NFNLWQAQREDSLLDISDWEQVITPMPNIN-GKDVYIGVDLSR 361


>gi|213402789|ref|XP_002172167.1| antiviral helicase SLH1 [Schizosaccharomyces japonicus yFS275]
 gi|212000214|gb|EEB05874.1| antiviral helicase SLH1 [Schizosaccharomyces japonicus yFS275]
          Length = 1949

 Score = 44.2 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 41/151 (27%), Gaps = 16/151 (10%)

Query: 56   LEFMEAVDVHCHSNVNNSNPTIF----KCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             E         ++  +    T++       I A  G GKT        W     PG  ++
Sbjct: 1130 EEICAKRFSFFNAVQSQFFHTVYHTPTNVFIGAPTGSGKTMAAELATWWAFREHPGSKVV 1189

Query: 112  CIANSETQLKNTLWAEVSKWLSMLPHR-HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
             IA  +  +K  L      W + L    H   ++            +    +    + + 
Sbjct: 1190 YIAPMKALVKERL----KDWGARLVEPMHINMIELTGDTSPDSKTIMGADIIITTPEKWD 1245

Query: 171  ITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
               R +           +  +   V  DE  
Sbjct: 1246 GITRNWRT-------RKYVQNVSLVIIDEIH 1269


>gi|84995488|ref|XP_952466.1| hypothetical protein [Theileria annulata strain Ankara]
 gi|65302627|emb|CAI74734.1| hypothetical protein, conserved [Theileria annulata]
          Length = 927

 Score = 44.2 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 26/227 (11%), Positives = 67/227 (29%), Gaps = 18/227 (7%)

Query: 69  NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
           N+           I + RG GK+     + L         +I+ +A +   +   L+  +
Sbjct: 265 NIILEESDRKIVTILSDRGRGKSATI-GLFLSSALQLDFRNILIVAPNVENVST-LFDFL 322

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
            + L  L    +             Y +L  +              +   + P+      
Sbjct: 323 QRGLKCLGIDEYSGYTITRTEGYPSYLKLNRR------NSGVKFMSSTEIKNPE--EFIK 374

Query: 189 NTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW 248
                 +  +EA+  P  + +      +        ++ S+T           ++ L   
Sbjct: 375 MFSWDILIIEEAASIPLPVVE----TLSSKG----IVIISSTTGGYEGTGRSISLKLIQK 426

Query: 249 KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN 295
            +  + + T+  I             ++S +  +  L  F  + +++
Sbjct: 427 FKKTLSSDTLSEITLKQPIRYARNDPIESWLNTLLCLNTFKDEGLDS 473


>gi|258578215|ref|XP_002543289.1| potential translation-regulating helicase [Uncinocarpus reesii 1704]
 gi|237903555|gb|EEP77956.1| potential translation-regulating helicase [Uncinocarpus reesii 1704]
          Length = 1899

 Score = 44.2 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 29/125 (23%), Gaps = 14/125 (11%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               + +  G GKT      M W    +PG  I+ IA  +  ++      V  W   L   
Sbjct: 1119 NVLLGSPTGSGKTVAAELAMWWAFREKPGSKIVYIAPMKALVRER----VQDWRRRLAIP 1174

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN--THGMAVF 196
               ++  L                        I       +                 V 
Sbjct: 1175 LGLKLVEL--------TGDNTPDTRTIRNADMIITTPEKWDGISRSWQTRGYVRQVSLVI 1226

Query: 197  NDEAS 201
             DE  
Sbjct: 1227 IDEIH 1231


>gi|86160286|ref|YP_467071.1| type III restriction enzyme, res subunit [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776797|gb|ABC83634.1| type III restriction enzyme, res subunit [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 1033

 Score = 44.2 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 63/213 (29%), Gaps = 33/213 (15%)

Query: 43  KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102
            P     +P+ +Q   +E +       V       +K  + A  G GKT + A+     +
Sbjct: 306 TPFFFDLRPYEYQRAILEKL------RVEREEHGRWKNLVVAATGTGKTMIAAFDYAAQV 359

Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
                  ++ +A+ E  L+  L A    + ++L    + E+      P  +         
Sbjct: 360 KDGVRPRLLFVAHREEILEQALHA----FRNVLRDHSFGELLKGGSTPGSYEH------- 408

Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222
                   +     S +R D        +   V  DE           +L       P  
Sbjct: 409 --------LFATIQSLDRKDLPAALGRDYWHTVIVDEFHHAAAKTYGRLLEAVA---PKI 457

Query: 223 FWIMTSNTRRLN-----GWFYDIFNIPLEDWKR 250
              +T+   R +     GWF       +  W  
Sbjct: 458 LLGLTATPERADGLDVLGWFDHHVAADIRLWHA 490


>gi|227513235|ref|ZP_03943284.1| terminase large subunit [Lactobacillus buchneri ATCC 11577]
 gi|227083616|gb|EEI18928.1| terminase large subunit [Lactobacillus buchneri ATCC 11577]
          Length = 452

 Score = 44.2 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 31/271 (11%), Positives = 77/271 (28%), Gaps = 30/271 (11%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLI----STRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
                GRG  K++  +  +L ++          +++CI  +   L ++++ ++   +  L
Sbjct: 30  IIAKGGRGSFKSSTISLKLLTMLKKQAQLGHKANVVCIRENTVNLCDSVYGQICWAIDKL 89

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
                F      +  +            I S         Y  ++P+        + +A+
Sbjct: 90  NMTDEFRYSVSPMRIT-----------HISSGSAFYF---YGGDKPEKLKSNTIQNVIAL 135

Query: 196 FNDEAS-GTPDIINKSILGFFTELNPN----RFWIMTSNTRR-LNGWFYDIFNIPLEDWK 249
           + +EA+      +       F               + N  R    W  +   +  ++ +
Sbjct: 136 WYEEAANFKGAEVFDQTNPTFIRQKSPWVNDVKVFYSYNPPRNPYDWINEWIALQEQNPQ 195

Query: 250 RYQIDTR----TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA 305
            +   +      +          I +    D +  +   LG+       N          
Sbjct: 196 CFIDTSTYLDDELGITKDQQLALIETYKKNDLEYYKWLYLGK-IIGLGTNVYNMELF-HP 253

Query: 306 MSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
           +++   DD    L    D        T +  
Sbjct: 254 LTKLFDDDPLVNLYFSIDAGHINSATTCLAI 284


>gi|24371966|ref|NP_716008.1| helicase [Shewanella oneidensis MR-1]
 gi|24345815|gb|AAN53453.1|AE015485_2 helicase [Shewanella oneidensis MR-1]
          Length = 982

 Score = 44.2 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 53/181 (29%), Gaps = 28/181 (15%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q E +E +       V  S    FK  I A  G GKT ++A+         P  + + +A
Sbjct: 251 QREILEQLA------VERSVHGRFKNLIVAATGTGKTIISAFDFARFYKQHPEANFLFVA 304

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
           + +  L+  L A     L        +  +         +A +   ++ +D+        
Sbjct: 305 HRQEILQQALGAY-RGVLKNNQFGELWVAEHTPNSYKHLFASIQSLNLQLDN-------- 355

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
                     +         +  DE             G      P     +T+   R +
Sbjct: 356 ----------LPLAADFYDYIVIDEVHHVAASSY---RGLLEHFEPTILVGLTATPERHD 402

Query: 235 G 235
           G
Sbjct: 403 G 403


>gi|103487431|ref|YP_616992.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis
           RB2256]
 gi|98977508|gb|ABF53659.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis
           RB2256]
          Length = 459

 Score = 44.2 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 24/195 (12%), Positives = 46/195 (23%), Gaps = 19/195 (9%)

Query: 87  GIGKTTLNAWMMLWLISTRP------GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           G GKT   +   +  + T P      G  ++ +A +         +           R +
Sbjct: 49  GTGKTAGFSLPSIHHLLTYPHRPTPRGCRMLVLAPTRELAAQIAQS----------CRDY 98

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
                LS+        + +Q   +      +                          DEA
Sbjct: 99  GRFTKLSVSTVFGGVPINKQIRDLSQGVDILVATPGRLLDLIDQRALRLDDVEIFVLDEA 158

Query: 201 SGTPDIINKSIL---GFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257
               D+     L              +   +  + + G      N P+      Q  T  
Sbjct: 159 DQMMDMGFIHSLRRVAKLLPSRRQNLFFSATMPKEIAGLADQFLNDPVTVSVAPQATTAE 218

Query: 258 VEGIDSGFHEGIISR 272
                + F E    +
Sbjct: 219 KVRQFATFVEQKEKQ 233


>gi|146419877|ref|XP_001485898.1| hypothetical protein PGUG_01569 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 397

 Score = 44.2 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 66/232 (28%), Gaps = 29/232 (12%)

Query: 5   ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64
           +  D++L++EL    +  +  +      M   P  +KG     F  P   Q   +  +  
Sbjct: 1   MDFDRELDEELEFTKLTKKVKIYPTFESMNLKPELLKGIYNYGFEAPSAIQSRAIMQI-- 58

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI-STRPGMSIICIANSETQLKNT 123
                   +             G GKT   +  +L LI +       + ++ +       
Sbjct: 59  -IRGRDTIAQAQS---------GTGKTATFSIGILSLIDTKSKDCQALVLSPT------- 101

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
              E+++ +  +   H  +  ++  H      ++ E    +    + I+           
Sbjct: 102 --RELAQQIENVI-EHLGDYMNVRSHACIGGTQVGEDVKKLQQGQHIISGTPGRVLDMIK 158

Query: 184 FVGPHNTHGMAVFNDEAS-----GTPDIINKSILGFFTELNPNRFWIMTSNT 230
                  H   +  DEA      G  + I + I               T   
Sbjct: 159 RRNIMPRHVKMLVLDEADELLTKGFKEQIYE-IYKTLPAGAQVVVVSATLTP 209


>gi|317968585|ref|ZP_07969975.1| magnesium chelatase, ATPase subunit D [Synechococcus sp. CB0205]
          Length = 691

 Score = 44.2 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 64/244 (26%), Gaps = 30/244 (12%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA----NSETQLKNTLWAEVSKWLSML 135
             I+ GRG GK+ L   +     +  P + ++ +     N++ Q      A     L+ L
Sbjct: 38  VVIAGGRGTGKSVLARGL----HALLPPIDVLDVGGHGLNTDPQAPEDWDAPTRARLTEL 93

Query: 136 PHRH----WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
                      +    + P+ +    L  +         +T    S E           H
Sbjct: 94  GADPTGADKQALLPTKVIPAPFVQVPLGITEDRLVGSVDVTASLASGEAVFQPGLLAEAH 153

Query: 192 GMAVFNDEASGTPDIINKSILGFFTELNPNR-------------FWIMTSNTRRLNGWFY 238
              ++ DE +   D +   +L                         I T N         
Sbjct: 154 RGVLYVDELNLLDDNVTNLLLAAIGSGENRVEREGLSLSHPCRCLLIATYNPEEGA---- 209

Query: 239 DIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIP 298
            I +  L+ +       + +E             +   S+  R     +         + 
Sbjct: 210 -IRDHLLDRFAIALSANQVLELDQRVEITRSAIGHAESSESFRQRWQEETDALSTQLLLA 268

Query: 299 HNYI 302
             ++
Sbjct: 269 RQWL 272


>gi|311063565|ref|YP_003970290.1| DNA/RNA helicase [Bifidobacterium bifidum PRL2010]
 gi|310865884|gb|ADP35253.1| DNA/RNA helicase (DEAD/DEAH box family) [Bifidobacterium bifidum
           PRL2010]
          Length = 1061

 Score = 44.2 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 64/221 (28%), Gaps = 35/221 (15%)

Query: 16  HEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFS-QPHRWQLEFMEAVDVHCHSNVNNSN 74
                  +    FK       P     K LE    QP+  Q E + ++        +   
Sbjct: 215 LTEEWIKQYEEDFK---KYAPPRRDILKSLEGREIQPNAMQKEALASLKKLREKGEH--- 268

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
               +  I +  G GKT L+A    + +       ++ IA  +  LK  + +        
Sbjct: 269 ----RAIIVSATGTGKTYLSA----FDVREYRPRRMLYIAQQQMILKAAMKSYQKVL--G 318

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
            P                        S   D ++   T +T    +P+      +     
Sbjct: 319 CPQSELGLYTGT--------------SKQQDRRYVFATVQTMR--QPEALAQFASDEFDY 362

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
           V  DE         + ++  F + +      MT+   R +G
Sbjct: 363 VLVDEVHHAGAEGYQRVIDHFRDAD--FMLGMTATPERTDG 401


>gi|310286672|ref|YP_003937930.1| DNA/RNA helicase (DEAD/DEAH box family) [Bifidobacterium bifidum
           S17]
 gi|309250608|gb|ADO52356.1| DNA/RNA helicase (DEAD/DEAH box family) [Bifidobacterium bifidum
           S17]
          Length = 1061

 Score = 44.2 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 64/221 (28%), Gaps = 35/221 (15%)

Query: 16  HEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFS-QPHRWQLEFMEAVDVHCHSNVNNSN 74
                  +    FK       P     K LE    QP+  Q E + ++        +   
Sbjct: 215 LTEEWIKQYEEDFK---KYAPPRRDILKSLEGREIQPNAMQKEALASLKKLREKGEH--- 268

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
               +  I +  G GKT L+A    + +       ++ IA  +  LK  + +        
Sbjct: 269 ----RAIIVSATGTGKTYLSA----FDVREYRPRRMLYIAQQQMILKAAMKSYQKVL--G 318

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
            P                        S   D ++   T +T    +P+      +     
Sbjct: 319 CPQSELGLYTGT--------------SKQQDRRYVFATVQTMR--QPEALAQFASDEFDY 362

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
           V  DE         + ++  F + +      MT+   R +G
Sbjct: 363 VLVDEVHHAGAEGYQRVIDHFRDAD--FMLGMTATPERTDG 401


>gi|237809847|ref|YP_002894287.1| type III restriction protein res subunit [Tolumonas auensis DSM
           9187]
 gi|237502108|gb|ACQ94701.1| type III restriction protein res subunit [Tolumonas auensis DSM
           9187]
          Length = 1046

 Score = 44.2 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 54/185 (29%), Gaps = 28/185 (15%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P   Q E +E +       V  +    ++  + A  G GKT ++A+     +  +P  + 
Sbjct: 320 PFPHQQEILEQLT------VERTLHQRYRNLVVAATGTGKTLISAFDFARFLKQKPDATF 373

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + IA+ E  LK    +     L       ++   +   H    +  +   +  +      
Sbjct: 374 LFIAHREEILKQA-QSAYRGVLRNSSFGEFWAGNTTPDHYRQLFVTIQTLNNQLPQ---- 428

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
                         +     +   +  DE                   +P     +T+  
Sbjct: 429 --------------LQLTADYYDYIVIDEVHHIAAQSY---RRVLDNFSPTILLGLTATP 471

Query: 231 RRLNG 235
            R +G
Sbjct: 472 ERHDG 476


>gi|225156013|ref|ZP_03724496.1| hypothetical protein ObacDRAFT_8995 [Opitutaceae bacterium TAV2]
 gi|224803246|gb|EEG21486.1| hypothetical protein ObacDRAFT_8995 [Opitutaceae bacterium TAV2]
          Length = 527

 Score = 44.2 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 49/166 (29%), Gaps = 17/166 (10%)

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
           R  GKTT  A   L  ++  PG  I   + S       +  E   +      RH    Q 
Sbjct: 34  RQSGKTTTLALRALREMAAHPGRLITFASASLLVGHEVIEKEAHLFRE--ILRHVQSQQK 91

Query: 146 LSLHPSGWYAELLEQSMGIDS-----KHYTITCRTYSEERPDTFVGPHNTHGMA------ 194
             +     +   +      D      +   +  + + ++   +       +         
Sbjct: 92  NPIVAEDAHGRDVLADGTDDDFAAAFESRRMVVKLWHDDTVYSRTQVIAPNPATARGFTG 151

Query: 195 -VFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
            V  DE     D   +  +++   +  +P+   ++ +     +  F
Sbjct: 152 SVMIDECGLIADFRGVWDAMIYIMSS-DPSFTCLLATTPPIDDNHF 196


>gi|170727588|ref|YP_001761614.1| type III restriction protein res subunit [Shewanella woodyi ATCC
           51908]
 gi|169812935|gb|ACA87519.1| type III restriction protein res subunit [Shewanella woodyi ATCC
           51908]
          Length = 884

 Score = 44.2 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 25/205 (12%), Positives = 57/205 (27%), Gaps = 30/205 (14%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q   + A+  H +           +  + A  G GKTTL   +   L       + +
Sbjct: 8   RPYQERVLNAIKEHLNDE---------RLHVVAAPGAGKTTLGLEVFRVL-----EKTTL 53

Query: 112 CIANSETQLKNTLWAEVSK-----------WLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
            ++ +   +++     +             W+S   H                +AE  E 
Sbjct: 54  VLSPT-RVIRDQWIERLKDFTGTGDETKLNWVSNSIHDPKVLTSITYQALHAKFAE--EL 110

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM-AVFNDEASGTPDIINKSILGFFTELN 219
           +   D            +   ++F+     H +  +  DEA        +++        
Sbjct: 111 NADEDEGVLLEEDDGLKDNEVNSFIKVIEEHKIQILILDEAHHLRAEWWRALEKVCEYFP 170

Query: 220 PNRFWIMTSNTRRLN-GWFYDIFNI 243
                 +T+       G  +  +  
Sbjct: 171 DIILVSLTATPPYDAQGHEWARYEQ 195


>gi|87118190|ref|ZP_01074089.1| ATP-independent RNA helicase DbpA [Marinomonas sp. MED121]
 gi|86165824|gb|EAQ67090.1| ATP-independent RNA helicase DbpA [Marinomonas sp. MED121]
          Length = 461

 Score = 44.2 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 31/298 (10%), Positives = 74/298 (24%), Gaps = 45/298 (15%)

Query: 87  GIGKTTLNAWMMLWLISTRP-GMSIICIANSETQLKNTLWAEVSKWLSMLPH-RHWFEMQ 144
           G GKT   A  ML  I+ R  G+  + +  +  +L + +  E+ K    L + +      
Sbjct: 52  GSGKTLAFAIGMLMKINPRYFGVQGLVMCPT-RELADQVCKEIRKTARFLENIKVLSLCG 110

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
            +   P     E            + +                       +  DEA    
Sbjct: 111 GMPFGPQIGSLEH---------GAHIVVGTPGRLLEHVRKGTLRLDSLNTLVLDEADRML 161

Query: 205 DIINKSILGFF---TELNPNRFWIMTSNTRRLNGWFYDIFNIPL---------EDWKRYQ 252
           D+     +      T           +    +     +  + P                Q
Sbjct: 162 DMGFVDSIRTLVESTPKKRQTLMFSATYPETIGKISAEFQHNPKTIKVEATQESKPDIKQ 221

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDV--ARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
              ++ +          +     +  +     +I  Q      +  + H    +A+  + 
Sbjct: 222 FFVKSNKDDKPYALMSAVRYQNPEQAIVFCNTKIECQ---TIADFLVDHKISAKAIHGDL 278

Query: 311 ID-----------DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETN 357
                        +    +++  D+A  G D      +  + + +        +    
Sbjct: 279 EQRDRDQVLVQFSNASCRILVATDVAARGID-----VKEVDTVINYDTTRDIDVHTHR 331


>gi|56414723|ref|YP_151798.1| phage gene [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197363650|ref|YP_002143287.1| phage gene [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|56128980|gb|AAV78486.1| putative phage gene [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197095127|emb|CAR60674.1| putative phage gene [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 591

 Score = 44.2 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 41/351 (11%), Positives = 78/351 (22%), Gaps = 76/351 (21%)

Query: 38  WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97
           +               W  E +     H   N+           I   R IG T   A+ 
Sbjct: 126 YKKNDISSLTQEDFDTWAEEHLFEYQKHLRRNIGQLVRN-----ILKSRQIGATWYFAFE 180

Query: 98  MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
                       I   A+        + AE  +   +     +F +              
Sbjct: 181 AFENAVMTGDPQIFLSASK-------VQAEYFRSYIVNIAEQYFGITLTGNPIRLSNGAE 233

Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFF 215
           L       +     T ++YS                 ++ DE    P+   +N+      
Sbjct: 234 LRFLSTNKN-----TAQSYSGH---------------LYCDEYFWVPNFTKLNEVASAMA 273

Query: 216 TELNPNRFWIMTSNTRRLNG-----WFYDIFNIPLEDWKRYQIDTRT--------VEGID 262
           T           S            W  D +    +     +  T               
Sbjct: 274 THDKWRT--TYFSTPSAKTHQAYPFWTGDEWKQGSKKRTAIKFPTFDELRDGGRVCPDGQ 331

Query: 263 SGFHEGIISRYGLDSDVARIE--------------ILGQFPQQEVNNFIPHNYIEEA--- 305
             +   +        ++A IE               +  F     ++    + +E     
Sbjct: 332 WRYVITMEDAIAGGFNLANIEKLRNRYNTATFNMLYMCVFVD-NKDSVFSFSDLEACGVE 390

Query: 306 --MSREAIDDLYAPL----IMG-CDIAGEGGDKTVVVFRRGNIIEHIFDWS 349
               ++   D   P     + G  D A  G D +  V      +  +  + 
Sbjct: 391 VDTWQDHNPDAARPFGDRPVWGGFDPARSG-DLSCFVIV-APPMFAVEKFR 439


>gi|323352542|gb|EGA85041.1| Kre33p [Saccharomyces cerevisiae VL3]
          Length = 966

 Score = 44.2 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 10/127 (7%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
           F  A++AGRG GK+     + +    +    +I   + S   LK  L+  + K    L +
Sbjct: 187 FTVALTAGRGRGKSAAL-GISIAAAVSHGYSNIFVTSPSPENLKT-LFEFIFKGFDALGY 244

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
           +   +   +      +   ++   +  D +      +T     P             V  
Sbjct: 245 QEHIDYDIIQSTNPDFNKAIVRVDIKRDHR------QTIQYIVPQDHQVLG--QAELVVI 296

Query: 198 DEASGTP 204
           DEA+  P
Sbjct: 297 DEAAAIP 303


>gi|323335941|gb|EGA77219.1| Kre33p [Saccharomyces cerevisiae Vin13]
          Length = 961

 Score = 44.2 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 10/127 (7%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
           F  A++AGRG GK+     + +    +    +I   + S   LK  L+  + K    L +
Sbjct: 187 FTVALTAGRGRGKSAAL-GISIAAAVSHGYSNIFVTSPSPENLKT-LFEFIFKGFDALGY 244

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
           +   +   +      +   ++   +  D +      +T     P             V  
Sbjct: 245 QEHIDYDIIQSTNPDFNKAIVRVDIKRDHR------QTIQYIVPQDHQVLG--QAELVVI 296

Query: 198 DEASGTP 204
           DEA+  P
Sbjct: 297 DEAAAIP 303


>gi|307286565|ref|ZP_07566657.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
           TX0109]
 gi|306502276|gb|EFM71557.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
           TX0109]
          Length = 439

 Score = 44.2 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 29/253 (11%), Positives = 71/253 (28%), Gaps = 23/253 (9%)

Query: 94  NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
            A +++  +  R  ++ + I   +  ++ +++ ++   +       +F++    +     
Sbjct: 49  IAHIIV-QLIMRYPVNAVAIRYVDNTIELSIFEQIKWAIEEQGVSKYFKVNKSPMK---- 103

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSIL 212
                   +    +   I  R          +          + +E A    +   K+I 
Sbjct: 104 --------ITYKPRGNYIVFRGAQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTIT 155

Query: 213 GFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDWKRYQIDTRTVEGIDSGF 265
                          +  + N   R   W    +      E+   +    +    I   F
Sbjct: 156 NSLLRGELADGLFYKFFYSYNPPKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAF 215

Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
            E + +    +   A  E  G+     V  F     I+  +  E +   +  +  G D  
Sbjct: 216 IEEVNATRAKNPKRAEWEYDGKAIGSGVVPFDNLRVIKGCI-TEEMVANFDNIRNGLDF- 273

Query: 326 GEGGDKTVVVFRR 338
           G   D    V   
Sbjct: 274 GYATDPLAFVRWH 286


>gi|302677588|ref|XP_003028477.1| hypothetical protein SCHCODRAFT_60365 [Schizophyllum commune H4-8]
 gi|300102165|gb|EFI93574.1| hypothetical protein SCHCODRAFT_60365 [Schizophyllum commune H4-8]
          Length = 1761

 Score = 44.2 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 36/294 (12%), Positives = 77/294 (26%), Gaps = 46/294 (15%)

Query: 51   PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
            P  WQ   ++A+D +                + A    GKT ++ + M  ++       +
Sbjct: 757  PDAWQRRVLDAIDRNSS------------LLVIAPTSSGKTFISYYAMEQVLRESDKGIL 804

Query: 111  ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
            + IA ++  +         ++   LP    + MQ+            +  ++        
Sbjct: 805  VYIAPTKALVAQIAAEVYGRFKKTLPSGSLWAMQTRDYRIQDPQNCQILITVPEMLAIML 864

Query: 171  ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN---RFWIMT 227
            ++        P             +  DE          ++      L P          
Sbjct: 865  LSPPLAKSWTP---------RIKRIILDEIHSIGQQEGGAVWEQILLLAPCPVIGLSATI 915

Query: 228  SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
             + R+ N W   +      + +  +   R        +                      
Sbjct: 916  GSPRKFNDWLASVQRAHGYEHELVEHPHRYSHLRKYQYVLAKKPPKFQGLATYE------ 969

Query: 288  FPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGD----KTVVVFR 337
             P + +    P + +           +  P  M  D+A E  D     TV+  R
Sbjct: 970  -PSERIQFLHPASML-----------VNGPRAMPPDLAFEASDTLSLYTVLAKR 1011


>gi|294656530|ref|XP_002770282.1| DEHA2D07942p [Debaryomyces hansenii CBS767]
 gi|199431539|emb|CAR65638.1| DEHA2D07942p [Debaryomyces hansenii]
          Length = 828

 Score = 44.2 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 67/246 (27%), Gaps = 21/246 (8%)

Query: 31  FVMRFFPWGIK--GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGI 88
           ++   FP+       P++   QP    ++ +       +  +   +       ++   G+
Sbjct: 187 YLKDVFPYLQAVDKIPVQRAEQPPGMNIKLLPFQQEGLNWLIKQEDGEYGGGILADEMGM 246

Query: 89  GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
           GKT     + L  ++ RP + +        Q KN +       L  +   H     S   
Sbjct: 247 GKTIQMIALFLSDLTKRPNLVVGPTVA-LMQWKNEIEKHTKGNLLKVLLFHGANRSSDLE 305

Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208
             + +   L   S+                         H      V  DEA    D  +
Sbjct: 306 ELNKYDIILTSYSVLESVYRKEKYGFKRKNGLVKETSPLHALKFYRVILDEAHNIKDRTS 365

Query: 209 KSILGFFTELNPNRFWIMTSNTRRL-----------------NGWFYDIFNIPLEDWKRY 251
            +       +N  + W +T    +                  + +F    +   ++WK  
Sbjct: 366 GTAKAA-NNVNCIKKWCLTGTPLQNRIGEMYSLIRFLKLEPFHKYFCTKCDCSSDEWKFS 424

Query: 252 QIDTRT 257
                 
Sbjct: 425 NWRHCD 430


>gi|190409119|gb|EDV12384.1| hypothetical protein SCRG_03266 [Saccharomyces cerevisiae RM11-1a]
          Length = 1056

 Score = 44.2 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 10/127 (7%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
           F  A++AGRG GK+     + +    +    +I   + S   LK  L+  + K    L +
Sbjct: 277 FTVALTAGRGRGKSAAL-GISIAAAVSHGYSNIFVTSPSPENLKT-LFEFIFKGFDALGY 334

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
           +   +   +      +   ++   +  D +      +T     P             V  
Sbjct: 335 QEHIDYDIIQSTNPDFNKAIVRVDIKRDHR------QTIQYIVPQDHQVLG--QAELVVI 386

Query: 198 DEASGTP 204
           DEA+  P
Sbjct: 387 DEAAAIP 393


>gi|151944405|gb|EDN62683.1| killer toxin resistant protein [Saccharomyces cerevisiae YJM789]
 gi|207341763|gb|EDZ69729.1| YNL132Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256273837|gb|EEU08759.1| Kre33p [Saccharomyces cerevisiae JAY291]
 gi|259149229|emb|CAY82471.1| Kre33p [Saccharomyces cerevisiae EC1118]
          Length = 1056

 Score = 44.2 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 10/127 (7%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
           F  A++AGRG GK+     + +    +    +I   + S   LK  L+  + K    L +
Sbjct: 277 FTVALTAGRGRGKSAAL-GISIAAAVSHGYSNIFVTSPSPENLKT-LFEFIFKGFDALGY 334

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
           +   +   +      +   ++   +  D +      +T     P             V  
Sbjct: 335 QEHIDYDIIQSTNPDFNKAIVRVDIKRDHR------QTIQYIVPQDHQVLG--QAELVVI 386

Query: 198 DEASGTP 204
           DEA+  P
Sbjct: 387 DEAAAIP 393


>gi|27366822|ref|NP_762349.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
 gi|320158706|ref|YP_004191084.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
 gi|27358389|gb|AAO07339.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
 gi|319934018|gb|ADV88881.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
          Length = 427

 Score = 44.2 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 25/272 (9%), Positives = 76/272 (27%), Gaps = 38/272 (13%)

Query: 87  GIGKTTLNAWMMLWLIST------RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           G GKT   +  ++  +        R     +  A +          E+++ ++    + +
Sbjct: 48  GTGKTAAFSLPLIQQLLESGKSASRKTARALIFAPT---------RELAEQIADNI-KAY 97

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
            +  +LS+       ++  Q   +++    +       E           +   +  DEA
Sbjct: 98  TKYTNLSVAAIFGGRKMSSQERMLENGVDILVATPGRLEEHIESGNVSVANIEFLVFDEA 157

Query: 201 SGT-PDIINKSILGFFTE-LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
                     ++     +     +  + ++ T               +     + +T   
Sbjct: 158 DRILDMGFINAVRKIMLDVETNPQIMMFSATTSSQLNELSKDILRKPKRIAVERENTTAH 217

Query: 259 EG------IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN------------NFIPHN 300
                   +D      ++S      +  ++ +   + +   +            N    +
Sbjct: 218 TVAHVLYPVDQERKTELLSELIGRKNWQQVLVFVNYKETANDIVKELKLDGIKANVCHGD 277

Query: 301 YIEEAMSREAIDDLYA--PLIMGCDIAGEGGD 330
             + A  R   +       +++  D+A  G D
Sbjct: 278 KAQSARRRALEEFKEGKVRVMVATDVAARGLD 309


>gi|37676599|ref|NP_936995.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|37201142|dbj|BAC96965.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
          Length = 445

 Score = 44.2 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 25/272 (9%), Positives = 76/272 (27%), Gaps = 38/272 (13%)

Query: 87  GIGKTTLNAWMMLWLIST------RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           G GKT   +  ++  +        R     +  A +          E+++ ++    + +
Sbjct: 66  GTGKTAAFSLPLIQQLLESGKSASRKTARALIFAPT---------RELAEQIADNI-KAY 115

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
            +  +LS+       ++  Q   +++    +       E           +   +  DEA
Sbjct: 116 TKYTNLSVAAIFGGRKMSSQERMLENGVDILVATPGRLEEHIESGNVSVANIEFLVFDEA 175

Query: 201 SGT-PDIINKSILGFFTE-LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
                     ++     +     +  + ++ T               +     + +T   
Sbjct: 176 DRILDMGFINAVRKIMLDVETNPQIMMFSATTSSQLNELSKDILRKPKRIAVERENTTAH 235

Query: 259 EG------IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN------------NFIPHN 300
                   +D      ++S      +  ++ +   + +   +            N    +
Sbjct: 236 TVAHVLYPVDQERKTELLSELIGRKNWQQVLVFVNYKETANDIVKELKLDGIKANVCHGD 295

Query: 301 YIEEAMSREAIDDLYA--PLIMGCDIAGEGGD 330
             + A  R   +       +++  D+A  G D
Sbjct: 296 KAQSARRRALEEFKEGKVRVMVATDVAARGLD 327


>gi|6324197|ref|NP_014267.1| Kre33p [Saccharomyces cerevisiae S288c]
 gi|1730777|sp|P53914|KRE33_YEAST RecName: Full=UPF0202 protein KRE33; AltName: Full=Killer
           toxin-resistance protein 33
 gi|854505|emb|CAA86893.1| orf16 [Saccharomyces cerevisiae]
 gi|1302072|emb|CAA96014.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|285814522|tpg|DAA10416.1| TPA: Kre33p [Saccharomyces cerevisiae S288c]
          Length = 1056

 Score = 44.2 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 10/127 (7%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
           F  A++AGRG GK+     + +    +    +I   + S   LK  L+  + K    L +
Sbjct: 277 FTVALTAGRGRGKSAAL-GISIAAAVSHGYSNIFVTSPSPENLKT-LFEFIFKGFDALGY 334

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
           +   +   +      +   ++   +  D +      +T     P             V  
Sbjct: 335 QEHIDYDIIQSTNPDFNKAIVRVDIKRDHR------QTIQYIVPQDHQVLG--QAELVVI 386

Query: 198 DEASGTP 204
           DEA+  P
Sbjct: 387 DEAAAIP 393


>gi|293510345|ref|ZP_06669051.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus
           M809]
 gi|291466709|gb|EFF09229.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus
           M809]
          Length = 564

 Score = 44.2 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 27/283 (9%), Positives = 76/283 (26%), Gaps = 55/283 (19%)

Query: 82  ISAGRGIGKTTLNAWM----MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
           IS  R  GK+ + + M    +L+    +    I   +++  Q +   +   S+ ++++  
Sbjct: 96  ISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQTI-FKMASQQVNLMRS 154

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
           +  F  +   +          +  +            +      +               
Sbjct: 155 KSKFIREKTDVR---------KTDIEDILSSSVFAPLS------NNPDAVDGKDPTVAIL 199

Query: 198 DEASGTPDIINKSILGF-FTELNPNRFWIMTSNTRRLNGWFYDIF--------------- 241
           DE +  PD    S      T        ++++    LN   Y  +               
Sbjct: 200 DELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEEVRADN 259

Query: 242 -----------NIPLEDWKRYQID----TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
                          ++ K  +      ++          +  I             ++ 
Sbjct: 260 YFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADIQDELEKGTSYHKILIK 319

Query: 287 QFP---QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAG 326
            F     Q  ++ +  +  E+ ++     +    + +G D++ 
Sbjct: 320 NFNLWQAQREDSLLDISDWEQVITPMPNIN-GKDVYIGVDLSR 361


>gi|313904699|ref|ZP_07838073.1| type III restriction protein res subunit [Eubacterium
           cellulosolvens 6]
 gi|313470492|gb|EFR65820.1| type III restriction protein res subunit [Eubacterium
           cellulosolvens 6]
          Length = 1007

 Score = 44.2 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 61/189 (32%), Gaps = 31/189 (16%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
           +  QP+  Q+ F+  +     S VNN      +  + +  G GKT  +A+ M  L     
Sbjct: 228 YKLQPNSMQVGFITNLKKILASKVNND-----RALLISATGTGKTYASAFAMRELGF--- 279

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
              ++ + +     + T              + +  + S S+      A         D+
Sbjct: 280 -KRVLFLVHRGQLARQT-------------KKSYERVFSKSVSMGLVGAGKD----EYDA 321

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
            +   T +T S +  +            +  DEA   P    + I        P  +  M
Sbjct: 322 DYIFATVQTLSRD--EHLQKFDKESFDCIILDEAHHVPANTYQKI---MRHFTPKLWLGM 376

Query: 227 TSNTRRLNG 235
           T+   + + 
Sbjct: 377 TATPDKRDD 385


>gi|218905500|ref|YP_002453334.1| putative phage terminase, large subunit [Bacillus cereus AH820]
 gi|218536827|gb|ACK89225.1| putative phage terminase, large subunit [Bacillus cereus AH820]
          Length = 565

 Score = 44.2 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 80/280 (28%), Gaps = 56/280 (20%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLP-HR 138
           I   R  GK+TL + + L+L       G  +  +AN   Q K  ++ E  + +   P  R
Sbjct: 115 IMIARKNGKSTLASAIALYLFMKDNEYGARVYTLANKRDQAK-LVFEEAKRMVKQSPALR 173

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               +    L+ +   +EL                   S+ +    +  H         D
Sbjct: 174 RRVRIIRDKLYYNAMNSELEP---------------LASDSKKQDGLNTHG-----AIFD 213

Query: 199 EASGTPD-IINKSILGFFTELNPNRFWIMTS--------------------NTRRLNGWF 237
           E     D  +   I   +          +T+                    N    +  F
Sbjct: 214 EIHEYKDRKLINVIQSSYDARTQPLILHITTAGFVLDGPLMKFYEVADKMLNETVEHDRF 273

Query: 238 YDIFN--IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL------DSDVARIEILGQFP 289
           +       P +DWK  +   +    +D       +           + +  + + L  F 
Sbjct: 274 FAFIAEIDPEDDWKDEECWVKANPNLDVTITLEKLREAYKTYVLNNEVNEFKTKRLNLFV 333

Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIM--GCDIAGE 327
                     + I++   +E   ++    +   G D++  
Sbjct: 334 NAAEKWL-EWDVIKKNYEKEYDLEVLEGCMCIGGADLSET 372


>gi|149408208|ref|YP_001294642.1| hypothetical protein ORF049 [Pseudomonas phage PA11]
          Length = 535

 Score = 44.2 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 25/198 (12%), Positives = 57/198 (28%), Gaps = 6/198 (3%)

Query: 90  KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM-QSLSL 148
           K+ + A    W+I+  P ++I+ I+ + T  +  L+A  +   S + +R++ E       
Sbjct: 82  KSHMVATWCAWIITRHPEVTILYISATATLAETQLYAVKNILASSVYNRYFPEYIHPQEG 141

Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA--VFNDEASGTPDI 206
               W +  +        K         +        G H    +A  +   E + T D 
Sbjct: 142 KREKWSSNAMSIDHVQRKKEGIRDATIATAGLTTNTTGWHADIIVADDLVVPENAYTEDG 201

Query: 207 INKSILGF---FTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
                       +  N   F +        +  +    +   + +    +        + 
Sbjct: 202 RESVQKKSSQFTSIRNAGGFTMACGTRYHPSDIYATWRSQKYDIFDDEGMKIDEHPVWEI 261

Query: 264 GFHEGIISRYGLDSDVAR 281
             +        L     R
Sbjct: 262 KEYAVEKDNIFLWPRTIR 279


>gi|84393955|ref|ZP_00992695.1| ATP-dependent RNA helicase SrmB [Vibrio splendidus 12B01]
 gi|84375399|gb|EAP92306.1| ATP-dependent RNA helicase SrmB [Vibrio splendidus 12B01]
          Length = 421

 Score = 44.2 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 44/318 (13%), Positives = 83/318 (26%), Gaps = 50/318 (15%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           K      + +P + Q E +                       SA  G GKT       L 
Sbjct: 16  KAIDEMGYERPTQIQAEAIPQALDG------------RDVLASAPTGTGKTASFVLPALQ 63

Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
            +   P        ++ +  +          E ++ L+     + F +    ++      
Sbjct: 64  YLLDFPRKKSGPARMLILTPTRELAMQIT--EQARELAKYTSLNIFTITGGVMYQEHADI 121

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
               Q +        +                       +  DEA    D+    ++   
Sbjct: 122 LSTTQDI--------VVATPGRLMEYIEGERFDCRAIEWLVLDEADRMLDMGFGPVVDRL 173

Query: 216 TELNPNRFWIMTSNTR----RLNGWFYDIFNIP---------LEDWKRYQIDTR-TVEGI 261
           +     R   +  +       + G+  D+   P          E  K  Q   R      
Sbjct: 174 SAECRWRKQTLLFSATLEGKGIEGFTEDLLKNPAEIDAKSSLRERKKITQWYHRADSAKH 233

Query: 262 DSGFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AID 312
                + II+     S +     + LG+   Q  +  IP  +I  E    R         
Sbjct: 234 KLNILKHIITEQAERSIIFLKTRDRLGELRAQLESAQIPCVWIQGEMPQDRRNNAISRFR 293

Query: 313 DLYAPLIMGCDIAGEGGD 330
           D    +++  D+A  G D
Sbjct: 294 DGSINVLLATDVAARGID 311


>gi|71032923|ref|XP_766103.1| RNA helicase [Theileria parva strain Muguga]
 gi|68353060|gb|EAN33820.1| RNA helicase, putative [Theileria parva]
          Length = 1764

 Score = 44.2 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 46/173 (26%), Gaps = 13/173 (7%)

Query: 80   CAISAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              ++A  G GKT L A + L+ +    PG   + IA  +             W   L  +
Sbjct: 1006 LVVAAPTGSGKT-LVAELGLFRLFDKFPGKIAVYIAPLKALAHER----FKDWCKKLHFK 1060

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
            +  ++   +   +       E+           T   +             T    V  D
Sbjct: 1061 NILQLTGDTSSNNLDGQVHSERDELEKYDIVITTPEKWDGISRHWRRRKLVTKVGLVIID 1120

Query: 199  EASGTPDIINKSILGFFTELNP-------NRFWIMTSNTRRLNGWFYDIFNIP 244
            E     +     I    +              +I  S +        +  NIP
Sbjct: 1121 ELHLLGESRGAIIESIISRQYTINHSTGVELRYICLSTSLSNLNEIAEWMNIP 1173


>gi|200389255|ref|ZP_03215867.1| putative conserved hypothetical protein [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199606353|gb|EDZ04898.1| putative conserved hypothetical protein [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 591

 Score = 44.2 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 41/351 (11%), Positives = 78/351 (22%), Gaps = 76/351 (21%)

Query: 38  WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97
           +               W  E +     H   N+           I   R IG T   A+ 
Sbjct: 126 YKKNDISSLTQEDFDTWAEEHLFEYQKHLRRNIGQLVRN-----ILKSRQIGATWYFAFE 180

Query: 98  MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
                       I   A+        + AE  +   +     +F +              
Sbjct: 181 AFENAVMTGDPQIFLSASK-------VQAEYFRSYIVNIAEQYFGITLTGNPIRLSNGAE 233

Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFF 215
           L       +     T ++YS                 ++ DE    P+   +N+      
Sbjct: 234 LRFLSTNKN-----TAQSYSGH---------------LYCDEYFWVPNFTKLNEVASAMA 273

Query: 216 TELNPNRFWIMTSNTRRLNG-----WFYDIFNIPLEDWKRYQIDTRT--------VEGID 262
           T           S            W  D +    +     +  T               
Sbjct: 274 THDKWRT--TYFSTPSAKTHQAYPFWTGDEWKQGSKKRTAIKFPTFDELRDGGRVCPDGQ 331

Query: 263 SGFHEGIISRYGLDSDVARIE--------------ILGQFPQQEVNNFIPHNYIEEA--- 305
             +   +        ++A IE               +  F     ++    + +E     
Sbjct: 332 WRYVITMEDAIAGGFNLANIEKLRNRYNTATFNMLYMCVFVD-NKDSVFSFSDLEACGVE 390

Query: 306 --MSREAIDDLYAPL----IMG-CDIAGEGGDKTVVVFRRGNIIEHIFDWS 349
               ++   D   P     + G  D A  G D +  V      +  +  + 
Sbjct: 391 VDTWQDHNPDAARPFGDRPVWGGFDPARSG-DLSCFVIV-APPMFAVEKFR 439


>gi|307207083|gb|EFN84892.1| Fanconi anemia group M protein [Harpegnathos saltator]
          Length = 1344

 Score = 44.2 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 22/212 (10%), Positives = 60/212 (28%), Gaps = 19/212 (8%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              +    G+GKT + A +M       P   I+ +A ++  +      ++     ++   
Sbjct: 50  NTLVCLPTGLGKTFIAAVIMYNFWRWFPFGKIVFLAPTKPLVGQ----QIDACYEIMGI- 104

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                    +  +G   +   Q      +    T + + ++   + V  H      V  D
Sbjct: 105 ----PSVDMIKLTGAVNQKNRQIYWFKKRIIFATPQVFHKDLEKSIVPSHL--VKCVVVD 158

Query: 199 EASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY-----Q 252
           EA            +   +  N     +  S T        ++  +    +  +     +
Sbjct: 159 EAHKALGKHSYCESIRILSTQNKYFRILALSATPG--NKIDNVHEVIQNLYISHLELRDE 216

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
                +  ++    + I+     +    +   
Sbjct: 217 DSIDIIPYVNKRKIDTILIPLSNELAQFKERY 248


>gi|308187132|ref|YP_003931263.1| Terminase, ATPase subunit (GpP) [Pantoea vagans C9-1]
 gi|308057642|gb|ADO09814.1| Terminase, ATPase subunit (GpP) [Pantoea vagans C9-1]
          Length = 587

 Score = 44.2 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 32/318 (10%), Positives = 78/318 (24%), Gaps = 27/318 (8%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
           FM+    +  +          +  + + R IG T   A   L    T  G + I ++ S+
Sbjct: 140 FMDNCFEYQLNWHKAGLTHRIRNILKS-RQIGATFYFAREALIDALTT-GRNQIFLSASK 197

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
            Q        +  +          +   L       +     ++    + +  +    + 
Sbjct: 198 AQAH-VFKNYIIDFARQADVDLKGDPIVLPNGARLIFLGTNVRTAQSYTGNLYLDEYFWI 256

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL---NPNRFWIMTSNTRRLN 234
            +  +             +      TP  ++ S   F++        R           +
Sbjct: 257 PKFQELRKVASGMSLHKKWRTTYFSTPSALSHSAYPFWSGELFNKGRRSKDDRIEIDLSH 316

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294
                        W++       + G  + F    +          +  ++ +F   +  
Sbjct: 317 SHLAKGALCGDGQWRQIVTVEDALTGGCNLFDINQLQLEY-SPAEYQNLLMCEFVD-DEA 374

Query: 295 NFIPHNYIEEAMSREAIDDL-----------YAPLIMGCDIAGEGGDKTVVVFRRGN--- 340
           +  P   ++  M     +             Y P+ +G D +  G D             
Sbjct: 375 SVFPFAELQTCMIDSLEEWEDFNPYLPRPFAYRPVWIGYDPSHTG-DSAGCAVIAPPLVA 433

Query: 341 ----IIEHIFDWSAKLIQ 354
                +     W      
Sbjct: 434 GGKFRVLERHQWRGMDFA 451


>gi|229817453|ref|ZP_04447735.1| hypothetical protein BIFANG_02716 [Bifidobacterium angulatum DSM
           20098]
 gi|229785242|gb|EEP21356.1| hypothetical protein BIFANG_02716 [Bifidobacterium angulatum DSM
           20098]
          Length = 1055

 Score = 44.2 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 61/186 (32%), Gaps = 32/186 (17%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           +P+R Q E +  +        +       +  + +  G GKT L+A    + +       
Sbjct: 238 EPNRMQREALANLRRLRAEGEH-------RAIVISATGTGKTYLSA----FDVKQFHPKR 286

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           ++ IA+     +  +  +  +    +      E+  LS +      +             
Sbjct: 287 MLYIAH-----REEILIKARESYRKVLGCDESELGVLSGNSKQGDRKY------------ 329

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
            +     +   P+T       H   +  DEA        + I+ +FT   P+    MT+ 
Sbjct: 330 -VFAMVNTLSNPETLASFGKEHFDYILIDEAHHVSAASYRRIIDYFT---PDFMLGMTAT 385

Query: 230 TRRLNG 235
             R +G
Sbjct: 386 PERTDG 391


>gi|258544585|ref|ZP_05704819.1| CRISPR-associated helicase Cas3 domain protein [Cardiobacterium
           hominis ATCC 15826]
 gi|258520163|gb|EEV89022.1| CRISPR-associated helicase Cas3 domain protein [Cardiobacterium
           hominis ATCC 15826]
          Length = 747

 Score = 44.2 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 48/207 (23%), Gaps = 18/207 (8%)

Query: 55  QLEFME---AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
           Q E       +  H         P +F   +    G GKT  +    L          II
Sbjct: 221 QAELNRLRSEILEHAQQQAALP-PGLFTLTV--PTGGGKTYTSMAFALEHARQYGQRRII 277

Query: 112 CIAN---SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            +        Q                   H       +L       +L   +   D+  
Sbjct: 278 YVVPFTTIIEQNAAAFRQAFGALGEAAVLEHHSTFDDSTLLDRDSRDKLRHATENWDAPV 337

Query: 169 YTITCRTYSE----ERPDTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFTELNP 220
              T   + E    +R       HN     +  DEA   P      +  +I         
Sbjct: 338 IITTAVQFFESLFADRASRCRKLHNIANSIIILDEAQMLPLHLLRPVMAAIDELARNYRC 397

Query: 221 NRFWIMTSNTR-RLNGWFYDIFNIPLE 246
           +      +      +  FY  F    E
Sbjct: 398 SVVMCTATQPAISADNGFYGGFEDVRE 424


>gi|224052027|ref|XP_002200489.1| PREDICTED: similar to Fanconi anemia, complementation group M
           [Taeniopygia guttata]
          Length = 1598

 Score = 44.2 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 46/193 (23%), Gaps = 12/193 (6%)

Query: 49  SQPHRWQLEFMEAVDVHCHSNVNNSNPTI-------FKCAISAGRGIGKTTLNAWMMLWL 101
             P R   E   ++ ++  +                    +    G+GKT + A +M   
Sbjct: 42  PGPPRGFSEAAGSIWIYPTNLPVRPYQERMAGAALLANTLVCLPTGLGKTFVAAVVMYNF 101

Query: 102 ISTRPGMSIICIANSET---QLKNTLWAEVSKWLSML--PHRHWFEMQSLSLHPSGWYAE 156
               P   ++ +A ++    Q        +      +         +    L  +     
Sbjct: 102 YRWFPSGKVLFLAPTKPLVAQQMEACGRVMGIPARDMAEMTGGTQALGRRELWNTKRVFF 161

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT 216
           L  Q M  D    T           D        H       E S   D      L    
Sbjct: 162 LTPQIMVNDLSRGTCPAVEIKCLVIDEAHKALGNHAYCQVVRELSKYTDQFRVLALSATP 221

Query: 217 ELNPNRFWIMTSN 229
             +      + SN
Sbjct: 222 GSDTKAVQQVISN 234


>gi|86147398|ref|ZP_01065711.1| ATP-dependent RNA helicase SrmB [Vibrio sp. MED222]
 gi|218708540|ref|YP_002416161.1| ATP-dependent RNA helicase SrmB [Vibrio splendidus LGP32]
 gi|85834826|gb|EAQ52971.1| ATP-dependent RNA helicase SrmB [Vibrio sp. MED222]
 gi|218321559|emb|CAV17511.1| ATP-dependent RNA helicase srmB [Vibrio splendidus LGP32]
          Length = 421

 Score = 44.2 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 44/318 (13%), Positives = 82/318 (25%), Gaps = 50/318 (15%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           K      + +P + Q E +                       SA  G GKT       L 
Sbjct: 16  KAIDEMGYERPTQIQAEAIPQALDG------------RDVLASAPTGTGKTASFVLPALQ 63

Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
            +   P        ++ +  +          E ++ L+     + F +    ++      
Sbjct: 64  YLLDFPRKKSGPARMLILTPTRELAMQIT--EQARELAKYTSLNIFTITGGVMYQEHADI 121

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
               Q +        +                       +  DEA    D+    ++   
Sbjct: 122 LSTTQDI--------VVATPGRLMEYIEGERFDCRAIEWLVLDEADRMLDMGFGPVVDRL 173

Query: 216 TELNPNRFWIMTSNTR----RLNGWFYDIFNIP---------LEDWKRYQIDTR-TVEGI 261
           +     R   +  +       + G+  D+   P          E  K  Q   R      
Sbjct: 174 SAECRWRKQTLLFSATLEGKGIEGFTEDLLKNPAEIDAKSSLRERKKITQWYHRADSAKH 233

Query: 262 DSGFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AID 312
                + II+     S +     + LG    Q  +  IP  +I  E    R         
Sbjct: 234 KLDILKHIITEQAERSIIFLKTRDRLGDLRAQLESAQIPCVWIQGEMPQDRRNNAISRFR 293

Query: 313 DLYAPLIMGCDIAGEGGD 330
           D    +++  D+A  G D
Sbjct: 294 DGSINVLLATDVAARGID 311


>gi|167538349|ref|XP_001750839.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163770660|gb|EDQ84343.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1758

 Score = 43.8 bits (101), Expect = 0.038,   Method: Composition-based stats.
 Identities = 32/255 (12%), Positives = 69/255 (27%), Gaps = 27/255 (10%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
           SA +G+GKT + A +M       P   ++ +A ++  +      +V+    ++  R    
Sbjct: 204 SAAQGLGKTFIAAVVMYNFWRWYPNGKVLFMAPTKPLVAQ----QVNACYQIMGFRAEDI 259

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
            +           +L ++                                + V  DEA  
Sbjct: 260 CEMTGSKQHEHRDKLWQRKRVFFLTPQCAVRDLQRG-------YFSAREVVCVVFDEAHR 312

Query: 203 TPDIINKS--ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ--IDTRTV 258
                  S  I     E +  R   +++          ++    L D    +        
Sbjct: 313 ALGNHAYSLFIQSLLAESSQFRVMALSATPGDSVTKVQEVITNLLIDAIEIRGEEAADVA 372

Query: 259 EGIDSGFHEGIISRYGLDSDVARI---EILGQFPQQE-VNNFIPHNYIEEAMSREAIDDL 314
             ++    E ++     D +  R     +   F ++      +    ++   SR      
Sbjct: 373 PYVNQRTAEKVVVPMSPDIEACRSMLNRVAQPFIKRLVQGRVLGETTLDRLTSRMLAITR 432

Query: 315 YAPLIMGCDIAGEGG 329
                   D A  G 
Sbjct: 433 --------DRARSGD 439


>gi|329295805|ref|ZP_08253141.1| phage terminase large subunit [Plautia stali symbiont]
          Length = 470

 Score = 43.8 bits (101), Expect = 0.038,   Method: Composition-based stats.
 Identities = 36/290 (12%), Positives = 75/290 (25%), Gaps = 53/290 (18%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMS--IICIANSETQLKNTLWAEVSKWLSMLPHRH 139
           + AG+G GK+ L A + L+ +         +   A  + Q    L+ +    +   P   
Sbjct: 4   VEAGKGSGKSPLAAGIGLYCLVADNEARAEVYAAATKKDQAM-ILFRDAVAMVDQSPK-- 60

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP-DTFVGPHNTHGMAVFND 198
                          A+ +++S G   +      +  +  RP     G           D
Sbjct: 61  --------------LAKRIQKSGGAGKEWNLAFLQARAFFRPISADDGQSGPRPHCALID 106

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTR-RLNGWFYDIFNIPL------------ 245
           E           ++   T+        M +N+        YD                  
Sbjct: 107 EIHEHKSNQVVEMMRAGTKGRQQALIFMITNSGHNKTSVCYDYHEYGRKVAEGSIEDDSF 166

Query: 246 ---------------EDWKRYQIDTRTVEGIDSGFHEG---IISRYGLDSDVARIEILGQ 287
                          +     + +          + +              + R     Q
Sbjct: 167 FAFICSLDEGDDPFKDSGCWKKANPSLGHTFSERYLQEQVTQARGMPAKESLVRRLNFCQ 226

Query: 288 FPQQEVNNFIPHNYIE-EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
           +   E       +++  E  S +      +P   G D++G+  D T +  
Sbjct: 227 WVDAENPWINSDSWMACEKTSLDLASLANSPCYGGLDLSGK-QDLTALAL 275


>gi|300933380|ref|ZP_07148636.1| phage-associated protein [Corynebacterium resistens DSM 45100]
          Length = 454

 Score = 43.8 bits (101), Expect = 0.038,   Method: Composition-based stats.
 Identities = 36/279 (12%), Positives = 75/279 (26%), Gaps = 36/279 (12%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT--TLNAWMMLWLISTRPG 107
           +PH +Q +    V+ H  +            AI  G G+GKT  TL A   L L+ +   
Sbjct: 4   EPHDYQRQATAFVEDHPQA------------AILLGMGLGKTVITLTAIWNL-LLDSFHA 50

Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
             ++ +A      ++T  AE +KW  +        + S +       AE +   +  ++ 
Sbjct: 51  RRVLIVAP-LRVARDTWPAEATKWDHLAGLTIAVAVGSKAQRVDALAAEAMVTVINRENV 109

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
            + +          +T+          V  DE S   +   +      +        +  
Sbjct: 110 PWLV------RHLGNTW------PFDMVVIDELSSFKNHRAQRFKALASVRPRLTRIVGL 157

Query: 228 SNTRRLNGWFYDIFNI--------PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279
           + T   NG                       Y+      +  +           G + ++
Sbjct: 158 TGTPAANGLMDLWAQFRLLDEGQRLGRFITYYRNRWFVPDRRNGQQIFTYKPAPGAEGEI 217

Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
                      +  +              +         
Sbjct: 218 YEAISDITLSMRTTDYLRLPELTVTTTLVDLEPKERKAY 256


>gi|295398439|ref|ZP_06808478.1| helicase [Aerococcus viridans ATCC 11563]
 gi|294973303|gb|EFG49091.1| helicase [Aerococcus viridans ATCC 11563]
          Length = 950

 Score = 43.8 bits (101), Expect = 0.038,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 61/193 (31%), Gaps = 31/193 (16%)

Query: 44  PLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS 103
           P ++F  P++ Q   ++++     +  +       +  + A  G GKT L A+ +L    
Sbjct: 205 PAKNFIVPNKMQQPALDSLIELRQNGAD-------RGLVIAATGTGKTYLAAFDVL---- 253

Query: 104 TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
                 ++ I + E  L + + A   + +   P   +             Y    +Q++ 
Sbjct: 254 ESKPEKVLFIVHREQILHSAM-ASFKRVMHTEPDDLFGFYTGNKKDSQAKYIFATQQTIT 312

Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
            D   +                         +  DE         + I  +F    P   
Sbjct: 313 RDQHLHQFDP----------------EEFDYILVDEVHRAGSASYQRIFDYF---KPKFL 353

Query: 224 WIMTSNTRRLNGW 236
             +T+   R +G+
Sbjct: 354 LGLTATPERTDGY 366


>gi|84394092|ref|ZP_00992827.1| Superfamily II DNA and RNA helicase [Vibrio splendidus 12B01]
 gi|86146725|ref|ZP_01065046.1| Superfamily II DNA and RNA helicase [Vibrio sp. MED222]
 gi|84375283|gb|EAP92195.1| Superfamily II DNA and RNA helicase [Vibrio splendidus 12B01]
 gi|85835572|gb|EAQ53709.1| Superfamily II DNA and RNA helicase [Vibrio sp. MED222]
          Length = 428

 Score = 43.8 bits (101), Expect = 0.038,   Method: Composition-based stats.
 Identities = 23/272 (8%), Positives = 70/272 (25%), Gaps = 38/272 (13%)

Query: 87  GIGKTTLNAWMMLWLIST------RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           G GKT   +  ++  +        R     + +A +                     + +
Sbjct: 48  GTGKTAAFSLPVIQHLLNSGKKASRGTARGLILAPTRELAAQIAQNI----------KDY 97

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
            +   LS+       ++  Q   ++     +       E           +   +  DEA
Sbjct: 98  VKYTELSVSAVYGGNKMSSQVRQLELGVDILVATPGRLEEHLEAGNVSIANLEFLVFDEA 157

Query: 201 SGT-PDIINKSILGFFTE-LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
                     ++     +     +  + ++ T               +     + ++   
Sbjct: 158 DRILDMGFINAVRKIMLDVETSPQIMMFSATTSTQLNQLSVDILRKPKRISVERENSTAS 217

Query: 259 EG------IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI------------PHN 300
                   +D      ++S      +  ++ +   + +   +                 +
Sbjct: 218 TVGHVVYPVDQERKTELLSELIGRKNWRQVLVFVNYKETANDVVKELKLDGIKAVLCHGD 277

Query: 301 YIEEAMSR--EAIDDLYAPLIMGCDIAGEGGD 330
             + A  R  +   +  A +++  D+A  G D
Sbjct: 278 KAQSARRRALDDFKEGRARVMVATDVAARGLD 309


>gi|332994044|gb|AEF04099.1| hypothetical protein ambt_12905 [Alteromonas sp. SN2]
          Length = 792

 Score = 43.8 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 44/149 (29%), Gaps = 8/149 (5%)

Query: 70  VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129
            N  +  I K  I+A RG GK+ L    +   +    G  +   +        TL+  + 
Sbjct: 216 TNRWSQDIRKAVITAPRGRGKSALVGLFVASRL--NKGEKVAITSAIRDNT-TTLFKHIR 272

Query: 130 KWLSML----PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185
             + +L      +        +  P     E                  +     PD   
Sbjct: 273 LGMGLLNSEDKDQAGQSSDCTANPPDSNDTEPDAAKSATKENFSIKKGGSAQWLAPDNPT 332

Query: 186 GPHNTHGMAVFNDEASGTPDIINKSILGF 214
             +      +  DEA+  P  + K ++G 
Sbjct: 333 LINGD-FDLLIIDEAASFPLPVLKLLIGA 360


>gi|288959390|ref|YP_003449731.1| hypothetical protein AZL_025490 [Azospirillum sp. B510]
 gi|288911698|dbj|BAI73187.1| hypothetical protein AZL_025490 [Azospirillum sp. B510]
          Length = 478

 Score = 43.8 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 29/262 (11%), Positives = 64/262 (24%), Gaps = 25/262 (9%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIIC---IANSETQLKNTLWAEVSKWLSMLPHR 138
           I    G  KT+     +L     +P    +     A      +      +  W   +P R
Sbjct: 29  IMGPIGSAKTSTALMKILAHAVEQPEHRGVRYSRFAVIRDTYRRMGATTLRSWHKRVP-R 87

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
            + +     ++    +      +         +          D             + +
Sbjct: 88  DFGKFSDGGMNAPSIHHLRFLINDRSTVDCEVMFSA---VGDADVEDFCRGFEVTGGYLN 144

Query: 199 EASGTPDIINKSILGFFTELNP---------NRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
           EA      +            P            W+  +     +  + D    P   ++
Sbjct: 145 EADLLAPELL-VHFPGRCGRYPDNTMGGCVWRGLWLDFNAPDTESHLYRDFVEAPKPGYR 203

Query: 250 RYQIDT------RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
            +   +        VE +  G     +   G      R  +L Q+        +   + +
Sbjct: 204 LFIQPSGLGANAENVENLPGGAEYYRVEASGKPDWWVRRFVLNQWGYSREGKPVYPEWND 263

Query: 304 EAMS--REAIDDLYAPLIMGCD 323
                 R+       PL++G D
Sbjct: 264 VLHVSARDLEPIPGVPLVIGAD 285


>gi|257079391|ref|ZP_05573752.1| terminase large subunit [Enterococcus faecalis JH1]
 gi|256987421|gb|EEU74723.1| terminase large subunit [Enterococcus faecalis JH1]
          Length = 430

 Score = 43.8 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 28/253 (11%), Positives = 71/253 (28%), Gaps = 23/253 (9%)

Query: 94  NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
            A +++  +  R  ++ + I   +  ++ +++ ++   +       +F++    +     
Sbjct: 50  IAHIIV-QLIMRYPVNAVAIRYVDNTIELSIFEQIKWAIEEQGVSKYFKVNKSPMK---- 104

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSIL 212
                   +    +   I  R          +          + +E A    +   K+I 
Sbjct: 105 --------ITYKPRGNYIVFRGAQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTIT 156

Query: 213 GFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDWKRYQIDTRTVEGIDSGF 265
                          +  + N   R   W    +      E+   +    +    I   F
Sbjct: 157 NSLLRGELADGLFYKFFYSYNPPKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAF 216

Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
            E + +    +   A  E  G+     V  F     I+  +  + +   +  +  G D  
Sbjct: 217 IEEVNATRAKNPKRAEWEYDGKAIGSGVVPFDNLRVIKGCI-TDEMAANFDNIRNGLDF- 274

Query: 326 GEGGDKTVVVFRR 338
           G   D    V   
Sbjct: 275 GYATDPLAFVRWH 287


>gi|313139364|ref|ZP_07801557.1| DNA repair helicase rad25 [Bifidobacterium bifidum NCIMB 41171]
 gi|313131874|gb|EFR49491.1| DNA repair helicase rad25 [Bifidobacterium bifidum NCIMB 41171]
          Length = 1008

 Score = 43.8 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 64/221 (28%), Gaps = 35/221 (15%)

Query: 16  HEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFS-QPHRWQLEFMEAVDVHCHSNVNNSN 74
                  +    FK       P     K LE    QP+  Q E + ++        +   
Sbjct: 162 LTEEWIKQYEEDFK---KYAPPRRDILKSLEGREIQPNAMQKEALASLKKLREQGEH--- 215

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
               +  I +  G GKT L+A    + +       ++ IA  +  LK  + +        
Sbjct: 216 ----RAIIVSATGTGKTYLSA----FDVREYRPRRMLYIAQQQMILKAAMKSYQKVL--G 265

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
            P                        S   D ++   T +T    +P+      +     
Sbjct: 266 CPQSELGLYTGT--------------SKQQDRRYVFATVQTMR--QPEALAQFASDEFDY 309

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
           V  DE         + ++  F + +      MT+   R +G
Sbjct: 310 VLVDEVHHAGAEGYQRVIDHFRDAD--FMLGMTATPERTDG 348


>gi|224282225|ref|ZP_03645547.1| DNA or RNA helicase of superfamily II [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 1061

 Score = 43.8 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 64/221 (28%), Gaps = 35/221 (15%)

Query: 16  HEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFS-QPHRWQLEFMEAVDVHCHSNVNNSN 74
                  +    FK       P     K LE    QP+  Q E + ++        +   
Sbjct: 215 LTEEWIKQYEEDFK---KYAPPRRDILKSLEGREIQPNAMQKEALASLKKLREQGEH--- 268

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
               +  I +  G GKT L+A    + +       ++ IA  +  LK  + +        
Sbjct: 269 ----RAIIVSATGTGKTYLSA----FDVREYRPRRMLYIAQQQMILKAAMKSYQKVL--G 318

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
            P                        S   D ++   T +T    +P+      +     
Sbjct: 319 CPQSELGLYTGT--------------SKQQDRRYVFATVQTMR--QPEALAQFASDEFDY 362

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
           V  DE         + ++  F + +      MT+   R +G
Sbjct: 363 VLVDEVHHAGAEGYQRVIDHFRDAD--FMLGMTATPERTDG 401


>gi|168748234|ref|ZP_02773256.1| large subunit terminase [Escherichia coli O157:H7 str. EC4113]
 gi|168760844|ref|ZP_02785851.1| large subunit terminase [Escherichia coli O157:H7 str. EC4501]
 gi|168764789|ref|ZP_02789796.1| large subunit terminase [Escherichia coli O157:H7 str. EC4501]
 gi|168772888|ref|ZP_02797895.1| large subunit terminase [Escherichia coli O157:H7 str. EC4196]
 gi|168780241|ref|ZP_02805248.1| large subunit terminase [Escherichia coli O157:H7 str. EC4076]
 gi|189402095|ref|ZP_02780143.2| large subunit terminase [Escherichia coli O157:H7 str. EC4401]
 gi|189403042|ref|ZP_02793017.2| large subunit terminase [Escherichia coli O157:H7 str. EC4486]
 gi|189405676|ref|ZP_02823562.2| large subunit terminase [Escherichia coli O157:H7 str. EC508]
 gi|217327251|ref|ZP_03443334.1| hypothetical protein ESCCO14588_4827 [Escherichia coli O157:H7 str.
           TW14588]
 gi|217328376|ref|ZP_03444458.1| hypothetical protein ESCCO14588_2657 [Escherichia coli O157:H7 str.
           TW14588]
 gi|187771105|gb|EDU34949.1| large subunit terminase [Escherichia coli O157:H7 str. EC4196]
 gi|188017182|gb|EDU55304.1| large subunit terminase [Escherichia coli O157:H7 str. EC4113]
 gi|189001958|gb|EDU70944.1| large subunit terminase [Escherichia coli O157:H7 str. EC4076]
 gi|189357684|gb|EDU76103.1| large subunit terminase [Escherichia coli O157:H7 str. EC4401]
 gi|189362789|gb|EDU81208.1| large subunit terminase [Escherichia coli O157:H7 str. EC4486]
 gi|189365267|gb|EDU83683.1| large subunit terminase [Escherichia coli O157:H7 str. EC4501]
 gi|189368739|gb|EDU87155.1| large subunit terminase [Escherichia coli O157:H7 str. EC4501]
 gi|189378960|gb|EDU97376.1| large subunit terminase [Escherichia coli O157:H7 str. EC508]
 gi|217318803|gb|EEC27229.1| hypothetical protein ESCCO14588_2657 [Escherichia coli O157:H7 str.
           TW14588]
 gi|217319618|gb|EEC28043.1| hypothetical protein ESCCO14588_4827 [Escherichia coli O157:H7 str.
           TW14588]
          Length = 553

 Score = 43.8 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 50/240 (20%), Gaps = 37/240 (15%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
              Q +   ++                K  I   R +G +T     +L      P +   
Sbjct: 40  RPAQRQLFRSMHN--------------KNIILKARQLGFSTAIDIYLLDQALFIPHLKCG 85

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +A  +         +++     LP         +               +         
Sbjct: 86  IVAQDKQAASEIFRTKIAVPFDHLPDWLRASFTIVERRSGASG-----GYILFGHGSSIQ 140

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
              ++            +           +  P    +   G    ++        S   
Sbjct: 141 VATSFRSGTVQRLHISEHGKI-------CAKYPAKAKELRTGTLNAVSDECIIFDESTAE 193

Query: 232 RLNGWFYDIFNIPLE-----------DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280
            + G FY++ N   E           D+K +           +   E  +          
Sbjct: 194 GVGGDFYEMSNRAQEITASGLLLTAQDYKFHFYAWWQDPKYSARVPESGLKLSREKMTYF 253


>gi|168262802|ref|ZP_02684775.1| putative conserved hypothetical protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205348497|gb|EDZ35128.1| putative conserved hypothetical protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 591

 Score = 43.8 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 38/351 (10%), Positives = 76/351 (21%), Gaps = 76/351 (21%)

Query: 38  WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97
           +               W  E +     H   N+           I   R IG T   A+ 
Sbjct: 126 YKKNDISSLTQEDFDTWAEEHLFEYQKHLRRNIGQLVRN-----ILKSRQIGATWYFAFE 180

Query: 98  MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
                       I   A+        + AE  +   +     +F +              
Sbjct: 181 AFENAVMTGDPQIFLSASK-------VQAEYFRSYIVNIAEQYFGITLTGNPIRLSNGAE 233

Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFF 215
           L       +     T ++YS                 ++ DE    P+   +N+      
Sbjct: 234 LRFLSTNKN-----TAQSYSGH---------------LYCDEYFWVPNFTKLNEVASAMA 273

Query: 216 TELNPNRFWIMTSNTRRLNG-----WFYDIFNIPLEDWKRYQIDTRT--------VEGID 262
           T           S            W  D +    +     +  T               
Sbjct: 274 THDKWRT--TYFSTPSAKTHQAYPFWTGDEWKRGSKKRTAIKFPTFDELRDGGRVCPDGQ 331

Query: 263 SGFHEGIISRYGL--------------DSDVARIEILGQFPQQEVNNFIPHNYIEEA--- 305
             +   +                    ++    +  +  F     ++    + +E     
Sbjct: 332 WRYVITMEDAIAGGFNLANIDKLRNRYNTATFNMLYMCVFVD-SKDSVFSFSDLEACGVE 390

Query: 306 --MSREAIDDLYAPL----IMG-CDIAGEGGDKTVVVFRRGNIIEHIFDWS 349
               ++   D   P     + G  D A  G D +  V      +  +  + 
Sbjct: 391 VDTWQDHNPDAARPFGDRPVWGGFDPARSG-DLSCFVIV-APPMFAVEKFR 439


>gi|320035817|gb|EFW17757.1| DEAD/DEAH box helicase [Coccidioides posadasii str. Silveira]
          Length = 1970

 Score = 43.8 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 29/125 (23%), Gaps = 14/125 (11%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               + +  G GKT      M W    +PG  ++ IA  +  ++      V  W   L   
Sbjct: 1150 NVLLGSPTGSGKTVAAELAMWWAFREKPGSKVVYIAPMKALVRER----VQDWRRRLAMP 1205

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN--THGMAVF 196
               ++  L                        I       +                 V 
Sbjct: 1206 LGLKLVEL--------TGDNTPDTRTIRNADIIITTPEKWDGISRSWQTRGYVRQVSLVI 1257

Query: 197  NDEAS 201
             DE  
Sbjct: 1258 IDEIH 1262


>gi|303321375|ref|XP_003070682.1| activating signal cointegrator 1 complex subunit, putative
            [Coccidioides posadasii C735 delta SOWgp]
 gi|240110378|gb|EER28537.1| activating signal cointegrator 1 complex subunit, putative
            [Coccidioides posadasii C735 delta SOWgp]
          Length = 1970

 Score = 43.8 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 29/125 (23%), Gaps = 14/125 (11%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               + +  G GKT      M W    +PG  ++ IA  +  ++      V  W   L   
Sbjct: 1150 NVLLGSPTGSGKTVAAELAMWWAFREKPGSKVVYIAPMKALVRER----VQDWRRRLAMP 1205

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN--THGMAVF 196
               ++  L                        I       +                 V 
Sbjct: 1206 LGLKLVEL--------TGDNTPDTRTIRNADIIITTPEKWDGISRSWQTRGYVRQVSLVI 1257

Query: 197  NDEAS 201
             DE  
Sbjct: 1258 IDEIH 1262


>gi|156847546|ref|XP_001646657.1| hypothetical protein Kpol_1028p75 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156117336|gb|EDO18799.1| hypothetical protein Kpol_1028p75 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1982

 Score = 43.8 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 45/159 (28%), Gaps = 14/159 (8%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
               + +  G GKT + A + +W      PG  I+ IA  +  ++      V  W   +  
Sbjct: 1161 NVFVGSPTGSGKT-VVAELAIWHAFRDFPGKKIVYIAPMKALVRER----VDDWRKRI-- 1213

Query: 138  RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
                 +    +      +    + +  D+     T   +     +        +   V  
Sbjct: 1214 ---TPVTGDRVVELTGDSLPDPKDVR-DATIVITTPEKFDGISRNWQTRKFVQNISLVIM 1269

Query: 198  DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
            DE           +         N     TSN  RL G 
Sbjct: 1270 DEIHLLASDRGPILE--MIVSRMNYIASQTSNPIRLLGM 1306


>gi|119180556|ref|XP_001241737.1| hypothetical protein CIMG_08900 [Coccidioides immitis RS]
          Length = 1970

 Score = 43.8 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 29/125 (23%), Gaps = 14/125 (11%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               + +  G GKT      M W    +PG  ++ IA  +  ++      V  W   L   
Sbjct: 1150 NVLLGSPTGSGKTVAAELAMWWAFREKPGSKVVYIAPMKALVRER----VQDWRRRLAMP 1205

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN--THGMAVF 196
               ++  L                        I       +                 V 
Sbjct: 1206 LGLKLVEL--------TGDNTPDTRTIRNADIIITTPEKWDGISRSWQTRGYVRQVSLVI 1257

Query: 197  NDEAS 201
             DE  
Sbjct: 1258 IDEIH 1262


>gi|315038684|ref|YP_004032252.1| phage terminase, large subunit, PBSX family [Lactobacillus
           amylovorus GRL 1112]
 gi|312276817|gb|ADQ59457.1| phage terminase, large subunit, PBSX family [Lactobacillus
           amylovorus GRL 1112]
          Length = 418

 Score = 43.8 bits (101), Expect = 0.040,   Method: Composition-based stats.
 Identities = 29/261 (11%), Positives = 83/261 (31%), Gaps = 36/261 (13%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAEVSKWLSML 135
                GRG  K+++ +  ++ ++         +++ICI  ++  L+++++ ++   + +L
Sbjct: 9   IVCKGGRGSFKSSVISLKLVTMMMKYIQQGKTVNVICIRENQQYLRDSVYNQILWAMDIL 68

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT---HG 192
              + F  +   +                    + +T  T+     +  +   +    + 
Sbjct: 69  HVSNEFRTRVSPMVI-----------------THKLTGSTFYFYGANDPMKLKSNIVGNV 111

Query: 193 MAVFNDEASGTPD-IINKSILGFFTEL----NPNRFWIMTSNTRRLNGWFYDIFNIPL-- 245
           +A + +E +   +  +    +  F              ++ N  R    + + +      
Sbjct: 112 IACWFEEFANLKNVDVFDQSVPTFIRQKPDFTDQVKIYISYNPPRNPYAWVNEWVTQREV 171

Query: 246 -EDWKRYQIDTRT--VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302
            +D+           +        + I      D D  R   LG+       N    +  
Sbjct: 172 DDDYFIDSSTYLDDELGFTTKQQLKLINQYKKNDPDYYRWLYLGE-AVGLGTNVYNMDLF 230

Query: 303 EEAMSREAIDDLYAPLIMGCD 323
           +  +     D+    +I G D
Sbjct: 231 KV-VDHIPDDEYLTDIIYGLD 250


>gi|209883302|ref|YP_002287159.1| hypothetical protein OCAR_4144 [Oligotropha carboxidovorans OM5]
 gi|209871498|gb|ACI91294.1| hypothetical protein OCAR_4144 [Oligotropha carboxidovorans OM5]
          Length = 651

 Score = 43.8 bits (101), Expect = 0.040,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 43/130 (33%), Gaps = 10/130 (7%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS---- 133
           ++  +SA  G GK++     +   ++T    S++ +  +  Q ++  + E+S  L     
Sbjct: 80  YRV-VSAPTGSGKSSFAQAFIKGYLATNYDASVLYLVETIDQAEDV-FNEMSNLLDEDSV 137

Query: 134 --MLPHRHWFEMQSLSLHPSGWYAELLEQSMG--IDSKHYTITCRTYSEERPDTFVGPHN 189
                   W    S  L     +   +   +          +T   Y   R D  V    
Sbjct: 138 AVWTSAHDWNANTSEDLMEEYGFIPTMRFKLEELGSYPVAIVTHNFYRGSRADQAVVYKG 197

Query: 190 THGMAVFNDE 199
                +F DE
Sbjct: 198 RDRKLIFVDE 207


>gi|154294033|ref|XP_001547460.1| hypothetical protein BC1G_14050 [Botryotinia fuckeliana B05.10]
 gi|150845095|gb|EDN20288.1| hypothetical protein BC1G_14050 [Botryotinia fuckeliana B05.10]
          Length = 2018

 Score = 43.8 bits (101), Expect = 0.040,   Method: Composition-based stats.
 Identities = 15/123 (12%), Positives = 33/123 (26%), Gaps = 10/123 (8%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               + +  G GKT      M W    +PG  ++ IA  +  ++  +    ++    +  +
Sbjct: 1163 NVLLGSPTGSGKTIACELAMWWAFREKPGSKVVYIAPMKALVRERVKDWGARLTRQMGLK 1222

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               E+   +   +    +        +         T                   V  D
Sbjct: 1223 -LVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWTTRGYV---------RQVSLVIID 1272

Query: 199  EAS 201
            E  
Sbjct: 1273 EIH 1275


>gi|83765962|dbj|BAE56105.1| unnamed protein product [Aspergillus oryzae]
          Length = 1482

 Score = 43.8 bits (101), Expect = 0.040,   Method: Composition-based stats.
 Identities = 30/274 (10%), Positives = 76/274 (27%), Gaps = 37/274 (13%)

Query: 39  GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98
           G    P  +  +P +WQ E ++ +D                  + A    GKT ++ + +
Sbjct: 554 GSAPDPRVYDFEPDKWQREILDQIDA------------RKSLFVVAPTSAGKTFISFYAI 601

Query: 99  LWLISTRPGMSIICIANSETQLKNTLWAEVSKW--------------LSMLPHRHWFEMQ 144
             ++       I+ +A ++  +        +++              L++ P   W    
Sbjct: 602 KQILEDDNEGVIVYVAPTKALVNQIAAEVQARFSKNFKETGKGIPNDLTLEPRDCWTLWN 661

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD--------TFVGPHNTHGMAVF 196
           ++  + +  +      +  +    +         E                     +   
Sbjct: 662 AMEKYKTAQFPVDESLNPSLALPAFICKANIIQWEAKLKALLKCWMNDDKSPFDAVLNEL 721

Query: 197 NDEASGTPDIINKSILGFFTELNPNRFW---IMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253
           + E         +   G  ++ +  R      +   T  L    +D   +P   +   + 
Sbjct: 722 SYELQIKGQESFQVSSGIISQSDNKRELKRNSILDTTLPLICSLHDQGALPALFFNYDRS 781

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
               +        +   SR+   S     +ILG 
Sbjct: 782 HCERICHHLLSQLKEEESRWKASSSAWANDILGW 815


>gi|328552365|gb|AEB22857.1| ATP-dependent RNA helicase [Bacillus amyloliquefaciens TA208]
 gi|328910714|gb|AEB62310.1| putative ATP-dependent RNA helicase [Bacillus amyloliquefaciens
           LL3]
          Length = 376

 Score = 43.8 bits (101), Expect = 0.040,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 60/240 (25%), Gaps = 28/240 (11%)

Query: 31  FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
           F+    P+  +      F +P   Q +  + +                     +  G GK
Sbjct: 7   FLQHTQPFIAENWEASGFQEPTVIQEKAAQVIMEGKD------------VIAESPTGTGK 54

Query: 91  TTLNAWMMLWLISTRPGMS---IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
           T   A+ +  L    P      +I +A S   +                 + W +   L 
Sbjct: 55  T--LAYTLPVLERINPEQKHPQVIILAPSRELVMQIFQ----------VIQDWKKGSDLR 102

Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG-TPDI 206
                  A + +Q   + +K + I                       +  DEA       
Sbjct: 103 ALSLIGGANVKKQVEKLKNKPHIIAGTPGRVLELIQAKKLKMHEVKTIVLDEADQLVTKE 162

Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFH 266
             +++         +R  +  S T +                 R + +T     +   + 
Sbjct: 163 HRETMKKIIKTTLRDRQLLSFSATLQPETEEVLNAIAHEPSVLRVKRNTEEKARVTHQYL 222


>gi|224418675|ref|ZP_03656681.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Helicobacter
           canadensis MIT 98-5491]
 gi|253826788|ref|ZP_04869673.1| ATP-dependent RNA helicase DeaD [Helicobacter canadensis MIT
           98-5491]
 gi|313142197|ref|ZP_07804390.1| ATP-dependent RNA helicase [Helicobacter canadensis MIT 98-5491]
 gi|253510194|gb|EES88853.1| ATP-dependent RNA helicase DeaD [Helicobacter canadensis MIT
           98-5491]
 gi|313131228|gb|EFR48845.1| ATP-dependent RNA helicase [Helicobacter canadensis MIT 98-5491]
          Length = 505

 Score = 43.8 bits (101), Expect = 0.040,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 60/244 (24%), Gaps = 29/244 (11%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           KG     F +P   Q E +  +                     A  G GKT   A  ++ 
Sbjct: 22  KGIDEAGFKEPSPIQKEVIPVILDGLD------------VIAQAQTGTGKTAAFALPLIN 69

Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
            +     + ++ +A +   +      EV K           +   +          +  Q
Sbjct: 70  ELRHDGSIEVLIVAPTRELVMQI-GDEVFK---------LGKYNKVRTVSLFGGQPIRRQ 119

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFT--E 217
              ++ K   +                 +     V  DE+           I   FT   
Sbjct: 120 IELLEKKPQIVIATPGRLLDHLRNGRLKDFDPRVVVLDESDEMLDMGFLDDIEEIFTYLS 179

Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277
            +        +    +      I + P    K  ++        D      II+    + 
Sbjct: 180 SDRQTLLFSATMPTPIKHLAQKILHNP----KLIKVTPSDTTNQDISQRYYIINEQERED 235

Query: 278 DVAR 281
            + R
Sbjct: 236 AIVR 239


>gi|182417842|ref|ZP_02949156.1| putative phage terminase, large subunit [Clostridium butyricum
           5521]
 gi|237667920|ref|ZP_04527904.1| putative phage terminase, large subunit [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182378305|gb|EDT75837.1| putative phage terminase, large subunit [Clostridium butyricum
           5521]
 gi|237656268|gb|EEP53824.1| putative phage terminase, large subunit [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 560

 Score = 43.8 bits (101), Expect = 0.040,   Method: Composition-based stats.
 Identities = 29/276 (10%), Positives = 73/276 (26%), Gaps = 18/276 (6%)

Query: 86  RGIGKTTLNA-WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
           R   KT +     +L +++ +       I  ++        + V    +       F   
Sbjct: 114 RKNAKTAVVGLIFLLLMLTEQDYSEFYSICLTKELAAEIRKSMVQILEASPLIAKHFTWS 173

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
              + P                     + R  +    +      N++  A+ + + +   
Sbjct: 174 KTKIGPIECKITKSFFQPRTAESGKNNSIRPSAFVSDEHGNFKDNSNFTAMKSGQKNVIN 233

Query: 205 DIIN-----KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
            ++       +I       +      +   T +       ++    E         +   
Sbjct: 234 PLVFRTTTAYAIDNSIMTPDIETIRKVFDGTFKNERQLALLYYSEEEHLWDDIGMYQANP 293

Query: 260 GIDSGFHEGIISRYGLDS------DVARIEILGQF-PQQEVNNFIPHNYIEEAMSREAID 312
                 +  I              +    + +  F P+    +++    I+   + E I+
Sbjct: 294 LRIEENYNTIREDREKALIQENLVEEYLTKSMNYFMPENSGESYVTEEQIKACEADEDIN 353

Query: 313 DLYAPLIMGCDIAGEGGDKTVVVFR----RGNIIEH 344
                + +G D+A    D T +        GNII  
Sbjct: 354 WEGREVYVGVDLAET-DDNTAISMVAEDDDGNIITK 388


>gi|330791351|ref|XP_003283757.1| hypothetical protein DICPUDRAFT_147464 [Dictyostelium purpureum]
 gi|325086380|gb|EGC39771.1| hypothetical protein DICPUDRAFT_147464 [Dictyostelium purpureum]
          Length = 1580

 Score = 43.8 bits (101), Expect = 0.040,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 47/172 (27%), Gaps = 16/172 (9%)

Query: 64   VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR----PGMSIICIANSETQ 119
                 N+ NS        +    G GKT   A ++L  + +         I   + +   
Sbjct: 1076 TPSQENIFNSIIKRRLQLVRGPPGTGKTHFLALIVLIFMESYKRLGKPFRIAITSFTHNA 1135

Query: 120  LKNTLWAE--VSKWLSML----PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173
            + N L     + K  S       +   F+ Q+            L      + +H+ +  
Sbjct: 1136 IDNLLIRIASLKKEYSTSVGQDINFPLFKKQTKLSEDLKLNKIQLFDKKEFEREHFCVGA 1195

Query: 174  RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225
             ++S    D        +   +  DEAS     I         +        
Sbjct: 1196 TSWSLSNMD------YENFDLLIIDEASQLSSYIGAIPFSRLNKDTGRVIVC 1241


>gi|260579063|ref|ZP_05846962.1| SNF2 domain protein [Corynebacterium jeikeium ATCC 43734]
 gi|258602814|gb|EEW16092.1| SNF2 domain protein [Corynebacterium jeikeium ATCC 43734]
          Length = 453

 Score = 43.8 bits (101), Expect = 0.040,   Method: Composition-based stats.
 Identities = 36/279 (12%), Positives = 75/279 (26%), Gaps = 36/279 (12%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT--TLNAWMMLWLISTRPG 107
           +PH +Q +  + V+ H  +             I  G G+GKT  TL A   L L+ +   
Sbjct: 4   EPHDYQRQATQFVEDHPQA------------VILLGMGLGKTVITLTAIWNL-LLDSFQA 50

Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
             ++ +A      ++T  AE +KW  +        + S S       AE +   +  ++ 
Sbjct: 51  RRVLIVAP-LRVARDTWPAEATKWDHLAGLTIAVAVGSKSQRVDALAAEAMVTVINRENV 109

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
            + +      +   +T+          V  DE S   +   +               +  
Sbjct: 110 PWLV------KHLGNTW------PFDMVVIDELSSFKNHRAQRFKALAAVRPRLTRIVGL 157

Query: 228 SNTRRLNGWFYDIFNI--------PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279
           + T   NG                       Y+      +  +           G + ++
Sbjct: 158 TGTPAANGLMDLWAQFRLLDEGQRLGRFITHYRNRWFVPDRRNGQQIFTYKPAPGAEDEI 217

Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
                      +  +              +         
Sbjct: 218 YEAISDITLSMRTTDYLRLPELTVTTTLVDLEPKERKAY 256


>gi|330917073|ref|XP_003297665.1| hypothetical protein PTT_08155 [Pyrenophora teres f. teres 0-1]
 gi|311329501|gb|EFQ94223.1| hypothetical protein PTT_08155 [Pyrenophora teres f. teres 0-1]
          Length = 2004

 Score = 43.8 bits (101), Expect = 0.041,   Method: Composition-based stats.
 Identities = 14/123 (11%), Positives = 31/123 (25%), Gaps = 10/123 (8%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               + +  G GKT      M W    +PG  ++ IA  +  ++  +     +    +  +
Sbjct: 1157 NVLLGSPTGSGKTVAAELAMWWAFREKPGSKVVYIAPMKALVRERVQDWGKRLAGPMGLK 1216

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               E+   +   +    +        +                             V  D
Sbjct: 1217 -LVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRGYV---------RQVSLVIID 1266

Query: 199  EAS 201
            E  
Sbjct: 1267 EIH 1269


>gi|189204466|ref|XP_001938568.1| activating signal cointegrator 1 complex subunit 3 [Pyrenophora
            tritici-repentis Pt-1C-BFP]
 gi|187985667|gb|EDU51155.1| activating signal cointegrator 1 complex subunit 3 [Pyrenophora
            tritici-repentis Pt-1C-BFP]
          Length = 1810

 Score = 43.8 bits (101), Expect = 0.041,   Method: Composition-based stats.
 Identities = 14/123 (11%), Positives = 31/123 (25%), Gaps = 10/123 (8%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               + +  G GKT      M W    +PG  ++ IA  +  ++  +     +    +  +
Sbjct: 972  NVLLGSPTGSGKTVAAELAMWWAFREKPGSKVVYIAPMKALVRERVQDWGKRLAGPMGLK 1031

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               E+   +   +    +        +                             V  D
Sbjct: 1032 -LVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRGYV---------RQVSLVIID 1081

Query: 199  EAS 201
            E  
Sbjct: 1082 EIH 1084


>gi|170288816|ref|YP_001739054.1| CRISPR-associated HD domain-containing protein [Thermotoga sp. RQ2]
 gi|170176319|gb|ACB09371.1| CRISPR-associated HD domain protein [Thermotoga sp. RQ2]
          Length = 721

 Score = 43.8 bits (101), Expect = 0.041,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 53/190 (27%), Gaps = 16/190 (8%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
            + Q++ +          + N  P   +  +I+A  GIGKT   A ++           I
Sbjct: 220 RKNQIDSLRW---RFQDEILNFKPERGRIYSITAPTGIGKT--LANLLFAGHLADEDTII 274

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           I          N +   V K   +      F +       +  Y E  +    + +  ++
Sbjct: 275 IYALPFI----NIIEQTVDKIKEIFETEDPFFVLPFHHLANPVYEEADKYEDLLMNLWHS 330

Query: 171 ITCRTYSEERPDTFVGPHN------THGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
               T      ++ +               +  DE    P      +      L+     
Sbjct: 331 RVIVTTFVSLLESLITFRKIPFFYKFPKAVLILDEVQAIPHEYWTPVEKTVEFLSKMGTT 390

Query: 225 IMTSNTRRLN 234
           ++ S   +  
Sbjct: 391 VLLSTATKPA 400


>gi|114331461|ref|YP_747683.1| phage terminase [Nitrosomonas eutropha C91]
 gi|114308475|gb|ABI59718.1| phage Terminase [Nitrosomonas eutropha C91]
          Length = 557

 Score = 43.8 bits (101), Expect = 0.041,   Method: Composition-based stats.
 Identities = 39/320 (12%), Positives = 78/320 (24%), Gaps = 58/320 (18%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            WQ   + ++       V+      F+ A +S G+G GK+ L A + L+ +         
Sbjct: 72  DWQAFIVGSLF----GWVDVEGLRRFRVAYVSTGKGSGKSPLAAAVGLYGLVADGEARAE 127

Query: 112 C--IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           C   A  + Q        V+        R         +                     
Sbjct: 128 CYSAATKKDQAMILFRDAVAMVDQSAILRDAL------IKSGKGSTVWNLAYHK------ 175

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
             +   +     D               DE     +     ++   T+        M +N
Sbjct: 176 --SGSFFRPISSDDGQS--GPRPHIALIDEIHEHKNNFVVEMMRAGTKSRRQALIFMITN 231

Query: 230 T-RRLNGWFYDIFNIPL---------EDWKRYQI------------DTRTVEGIDSGF-- 265
           +     G  +D               + +  Y                         F  
Sbjct: 232 SGSDKTGPCWDYHTYGTQVASGQLTDDSFFSYICALDEGDDPINDESCWDKANPSLRFGL 291

Query: 266 ------HEGIISRYGLDSDVARIEIL--GQFPQQEVNNFIPHN-YIEEAMSREAIDDLYA 316
                  E +    G+ S  A +  L   ++       +I  + +++     +  +    
Sbjct: 292 PGYRYIREQVREAKGMPSKEAVVRRLNFCEW-TGADAPWISADVWMDARRDYDWRNLRSR 350

Query: 317 PLIMGCDIAGEGGDKTVVVF 336
               G D+     D T +V 
Sbjct: 351 RAWGGLDLGST-TDLTGLVL 369


>gi|326918311|ref|XP_003205433.1| PREDICTED: probable ATP-dependent RNA helicase DDX60-like [Meleagris
            gallopavo]
          Length = 1887

 Score = 43.8 bits (101), Expect = 0.041,   Method: Composition-based stats.
 Identities = 33/260 (12%), Positives = 76/260 (29%), Gaps = 30/260 (11%)

Query: 31   FVMRFFPWGIKGKPLEHFSQ--PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGI 88
            ++  +     +  P        P  WQ E ++AVD +  +             I A    
Sbjct: 869  YMDYYLLREERNDPDPRVQHFIPDTWQRELLDAVDNNESA------------VIVAPTSS 916

Query: 89   GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
            GKT  + + M  ++ T     ++ +A ++  +   + +  S++   LP      +    +
Sbjct: 917  GKTYASYYCMEKVLKTSDEGVVVYVAPTKALVNQVVGSVYSRFTKKLPDG----LVVCGV 972

Query: 149  HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS----GTP 204
                +  +++   + +               +  T           V  DE         
Sbjct: 973  FTRDYRHDVMNSQILVTVPQCLEILMLSPHHQSWT------KRIQYVIFDEIHCLGGEIG 1026

Query: 205  DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264
              + + +L               SN   L  W   +         + +  +   E   +G
Sbjct: 1027 AEVWEHLLVTIRCP-FLALSATISNPDHLTEWLQSVKRYWQCADNKIKGGSTDSEKNFAG 1085

Query: 265  FHEGIISRYGLDSDVARIEI 284
             ++G  S         R+ +
Sbjct: 1086 KYKG-RSTVREQKKSYRVRL 1104


>gi|154506189|ref|ZP_02042927.1| hypothetical protein RUMGNA_03731 [Ruminococcus gnavus ATCC 29149]
 gi|210612077|ref|ZP_03289163.1| hypothetical protein CLONEX_01362 [Clostridium nexile DSM 1787]
 gi|153793688|gb|EDN76108.1| hypothetical protein RUMGNA_03731 [Ruminococcus gnavus ATCC 29149]
 gi|210151739|gb|EEA82746.1| hypothetical protein CLONEX_01362 [Clostridium nexile DSM 1787]
          Length = 721

 Score = 43.8 bits (101), Expect = 0.041,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 56/212 (26%), Gaps = 17/212 (8%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +  HC      S   +F+  +    G GKT  +    L          +I +    + +
Sbjct: 221 EILKHCLE-EGRSERGLFRLTV--PTGGGKTIASLAFALRHAVENQMDRVIYVIPYTSII 277

Query: 121 KN--TLWAEVSKWLSMLPHRHWFEMQSLSLH---PSGWYAELLEQSMGIDSKHYTITCRT 175
           +    ++ E+    ++L +      +  S                   +          +
Sbjct: 278 EQNAKVFREILGDENVLENHCNIAYEVDSQRAEELQPMQLAAENWDKPVVVTTNVQFFES 337

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF---FTELNPNRFWIMTSNTRR 232
               +P      HN     +  DEA   P+   K  +               + T+    
Sbjct: 338 LFANKPSKCRKLHNIANSVIIFDEAQMLPNDYLKPCIAMIEELLNNYKTSVVLCTATQPA 397

Query: 233 LNGWFY------DIFNIPLEDWKRYQIDTRTV 258
           L  +F       ++     E +  ++      
Sbjct: 398 LKSFFQSEVLATELCPRMDEQFHFFKRTLFEN 429


>gi|91085743|ref|XP_973670.1| PREDICTED: similar to CG7922 CG7922-PA [Tribolium castaneum]
          Length = 1401

 Score = 43.8 bits (101), Expect = 0.041,   Method: Composition-based stats.
 Identities = 19/196 (9%), Positives = 48/196 (24%), Gaps = 15/196 (7%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              +S   G+GKT + A +M       P   +I +A +   +K  +        +++   
Sbjct: 57  NTLVSLPTGLGKTFIAAVVMYNFYRWYPHDKVIFMAPTRPLVKQQM----DACYNIMAIP 112

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                +           E+ +                   +     +         +  D
Sbjct: 113 QEVTAELTGTKIQQSRTEIWQ-------NKRVFFITPQVLQNDLNIIVELGPKIKCLVFD 165

Query: 199 EASGTPDIIN--KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256
           EA          + +     E    R   +++     +    D+           +  + 
Sbjct: 166 EAHRAKGNHAYCEVVRKLLPENKLFRVLALSATPGNSSKDVLDVMRNL--LIAHLEFRSE 223

Query: 257 TVEGIDSGFHEGIISR 272
               +     E  +  
Sbjct: 224 ESPDVKPYVFERALET 239


>gi|66394878|ref|YP_239721.1| ORF008 [Staphylococcus phage 85]
 gi|148267321|ref|YP_001246264.1| PBSX family phage terminase large subunit [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150393373|ref|YP_001316048.1| PBSX family phage terminase large subunit [Staphylococcus aureus
           subsp. aureus JH1]
 gi|189427164|ref|YP_001949840.1| putative terminase, large subunit [Staphylococcus phage phiMR25]
 gi|257793419|ref|ZP_05642398.1| phage terminase, large subunit [Staphylococcus aureus A9781]
 gi|258418133|ref|ZP_05682398.1| phage terminase [Staphylococcus aureus A9763]
 gi|258422108|ref|ZP_05685021.1| phage terminase large subunit [Staphylococcus aureus A9719]
 gi|258448907|ref|ZP_05697016.1| phage terminase [Staphylococcus aureus A6224]
 gi|258453887|ref|ZP_05701859.1| phage terminase large subunit [Staphylococcus aureus A5937]
 gi|282929085|ref|ZP_06336666.1| phage terminase large subunit [Staphylococcus aureus A10102]
 gi|295406591|ref|ZP_06816397.1| phage terminase large subunit [Staphylococcus aureus A8819]
 gi|297245317|ref|ZP_06929191.1| phage terminase large subunit [Staphylococcus aureus A8796]
 gi|62635807|gb|AAX90918.1| ORF008 [Staphylococcus phage 85]
 gi|147740390|gb|ABQ48688.1| phage terminase, large subunit, PBSX family [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149945825|gb|ABR51761.1| phage terminase, large subunit, PBSX family [Staphylococcus aureus
           subsp. aureus JH1]
 gi|189339075|dbj|BAG48139.1| putative terminase, large subunit [Staphylococcus phage phiMR25]
 gi|257787391|gb|EEV25731.1| phage terminase, large subunit [Staphylococcus aureus A9781]
 gi|257838926|gb|EEV63405.1| phage terminase [Staphylococcus aureus A9763]
 gi|257841903|gb|EEV66339.1| phage terminase large subunit [Staphylococcus aureus A9719]
 gi|257857803|gb|EEV80695.1| phage terminase [Staphylococcus aureus A6224]
 gi|257863752|gb|EEV86508.1| phage terminase large subunit [Staphylococcus aureus A5937]
 gi|282589277|gb|EFB94371.1| phage terminase large subunit [Staphylococcus aureus A10102]
 gi|285816567|gb|ADC37054.1| Phage terminase, large subunit [Staphylococcus phage phiSaST5K]
 gi|294968736|gb|EFG44759.1| phage terminase large subunit [Staphylococcus aureus A8819]
 gi|297177988|gb|EFH37237.1| phage terminase large subunit [Staphylococcus aureus A8796]
 gi|315128310|gb|EFT84329.1| phage terminase, large subunit, PBSX family protein [Staphylococcus
           aureus subsp. aureus CGS03]
          Length = 431

 Score = 43.8 bits (101), Expect = 0.041,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 75/270 (27%), Gaps = 24/270 (8%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
            N   ++  +   RG  K+   A  +++ I      +I+ +       K + + ++    
Sbjct: 20  HNKNFYRV-VKGSRGSKKSKTTAINLIYRIMKYDWANILVVRRFSNTNKQSTYTDLKWAT 78

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
           + L   H F+                   +        I  R   +    T +       
Sbjct: 79  NQLGVAHLFKFNES------------LPEITYKPTGQKILFRGLDDPLKITSITVDTGIL 126

Query: 193 MAVFNDEASGTPD-----IINKSILGFFTELNPNRFWIMTSNTRRLNGW---FYDIFNIP 244
              + +EA           + +SI G +      +   +T N      W    +      
Sbjct: 127 CWAWFEEAYQIETFAKFSTVVESIRGSYDSPEFFKQITVTFNPWSERHWLKPTFFDEETK 186

Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE 304
           L +        R  E +D    E     Y  +   ARI   G +          +  +E+
Sbjct: 187 LNNTFSDTTTYRVNEWLDKVDIERYEDLYIKNPRRARIVCDGDW-GVAEGLVFDNFKVED 245

Query: 305 AMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334
               E        +  G D  G   D T V
Sbjct: 246 FDWFE-EFKRTQEITHGMDF-GFSQDPTTV 273


>gi|323481151|gb|ADX80590.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
           62]
          Length = 422

 Score = 43.8 bits (101), Expect = 0.042,   Method: Composition-based stats.
 Identities = 28/253 (11%), Positives = 71/253 (28%), Gaps = 23/253 (9%)

Query: 94  NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
            A +++  +  R  ++ + I   +  ++ +++ ++   +       +F++    +     
Sbjct: 42  IAHIIV-QLIMRYPVNAVAIRYVDNTIELSIFEQIKWAIEEQGVSKYFKVNKSPMK---- 96

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSIL 212
                   +    +   I  R          +          + +E A    +   K+I 
Sbjct: 97  --------ITYKPRGNYIVFRGAQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTIT 148

Query: 213 GFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDWKRYQIDTRTVEGIDSGF 265
                          +  + N   R   W    +      E+   +    +    I   F
Sbjct: 149 NSLLRGELADGLFYKFFYSYNPPKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAF 208

Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
            E + +    +   A  E  G+     V  F     I+  +  + +   +  +  G D  
Sbjct: 209 IEEVNATRAKNPKRAEWEYDGKAIGSGVVPFDNLRVIKGCI-TDEMAANFDNIRNGLDF- 266

Query: 326 GEGGDKTVVVFRR 338
           G   D    V   
Sbjct: 267 GYATDPLAFVRWH 279


>gi|315127597|ref|YP_004069600.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. SM9913]
 gi|315016111|gb|ADT69449.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. SM9913]
          Length = 408

 Score = 43.8 bits (101), Expect = 0.042,   Method: Composition-based stats.
 Identities = 19/234 (8%), Positives = 47/234 (20%), Gaps = 22/234 (9%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-----SII 111
           +                         SA  G GKT       +  +   P        ++
Sbjct: 18  KMGYETPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAIQYLMDFPRRDPGFARVL 77

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +  +           + +   +L  +       L +                ++ +  +
Sbjct: 78  IMTPTRELAYQ-----IHEQCELLAKQ-----TQLKIGVVTGGINYGTHKEIFENNNDIL 127

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
                           H  +   +  DEA    D+  +  +    +   NR      +  
Sbjct: 128 IATPGRLMEYLETENFHAENVEMLILDEADRMLDMGFRKEMLRICDEAKNRRQCFLFSAT 187

Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
                        L D    +         +       +          R ++ 
Sbjct: 188 LEGDSVELFAERILNDPALLE---AESSRKEKAKIHQWVHLADD----YRHKLE 234


>gi|308172603|ref|YP_003919308.1| ATP-dependent RNA helicase [Bacillus amyloliquefaciens DSM 7]
 gi|307605467|emb|CBI41838.1| putative ATP-dependent RNA helicase [Bacillus amyloliquefaciens DSM
           7]
          Length = 376

 Score = 43.8 bits (101), Expect = 0.042,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 60/240 (25%), Gaps = 28/240 (11%)

Query: 31  FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
           F+    P+  +      F +P   Q +  + +                     +  G GK
Sbjct: 7   FLQHTQPFIAENWEASGFQEPTVIQEKAAQVIMEGKD------------VIAESPTGTGK 54

Query: 91  TTLNAWMMLWLISTRPGMS---IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
           T   A+ +  L    P      +I +A S   +                 + W +   L 
Sbjct: 55  T--LAYTLPVLERINPEQKHPQVIILAPSRELVMQIFQ----------VIQDWKKGSDLR 102

Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG-TPDI 206
                  A + +Q   + +K + I                       +  DEA       
Sbjct: 103 ALSLIGGANVKKQVEKLKNKPHIIAGTPGRVLELIQAKKLKMHEVKTIVLDEADQLVTKE 162

Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFH 266
             +++         +R  +  S T +                 + + +T     +   + 
Sbjct: 163 HRETMKKIIKTTLRDRQLLSFSATLQPETEEVLNEIAHEPAVLKVKRNTEEKARVTHQYL 222


>gi|23465319|ref|NP_695922.1| helicase [Bifidobacterium longum NCC2705]
 gi|23325959|gb|AAN24558.1| probable helicase [Bifidobacterium longum NCC2705]
          Length = 863

 Score = 43.8 bits (101), Expect = 0.042,   Method: Composition-based stats.
 Identities = 38/268 (14%), Positives = 67/268 (25%), Gaps = 24/268 (8%)

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
               +  N++        ++A  G GKT + A   ++L   R  +        +      
Sbjct: 48  DDFQTEANDALEAGSNVLVAAPTGAGKT-VVADFAIYLAQER-NVKAFYTTPIKALSNQK 105

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
               V  +    P +        S++       +  + +                ER  T
Sbjct: 106 YHDLVDVY---GPDKVGLLTGDTSINSEADIVVMTTEVLRN-----------MLYERSTT 151

Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM-TSNTRRLNGWFYDIFN 242
                      V  DE     D     +        P    I+  S T      F +   
Sbjct: 152 LNALR-----YVILDEVHYLADRFRGPVWEEVIIHLPKTVKIVGLSATVSNVEDFSNWIA 206

Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH--N 300
               D K    + R V        +          D+ R +  G+   +     I     
Sbjct: 207 SVRGDTKLVISEHRPVPLEQHVIVQADEHTEPEVLDLYRRDGNGEQATKLNAELINRLDQ 266

Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEG 328
              +A  R   +        G D  G+G
Sbjct: 267 LDRKAARRRGEERPDKRKGFGRDRGGKG 294


>gi|282852128|ref|ZP_06261485.1| DEAD/DEAH box helicase [Lactobacillus gasseri 224-1]
 gi|282556692|gb|EFB62297.1| DEAD/DEAH box helicase [Lactobacillus gasseri 224-1]
          Length = 415

 Score = 43.8 bits (101), Expect = 0.042,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 61/229 (26%), Gaps = 23/229 (10%)

Query: 42  GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101
           G    +FS+P + Q   + A+  +                + A  G GKT      +L +
Sbjct: 23  GLEKINFSKPTKVQAAVIPALLSNKS------------VVVQAATGSGKTHAYLLPLLNM 70

Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
           I     ++   +     +L N L+    +       R    +     +  G      +  
Sbjct: 71  IDENAPVTQAVVTAPSRELANQLYKVARQ------LRDASGLNISIEYLGGGNDRNRQIE 124

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG-TPDIINKSILGFFTELNP 220
              +     I           +    +  +  A   DEA           +    ++L+ 
Sbjct: 125 KAENRAPQLIIATPGRLHDFASKKVINLDNVKAFIIDEADMTLDMGFLSQMDEIISKLDK 184

Query: 221 NRFWIMTSN--TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267
                  S     +L  +     + P  D+            I +   +
Sbjct: 185 KVVLGAFSATIPVKLENFLRKYMSKP--DFIVIDNPAIIAPTIQNDLID 231


>gi|116629091|ref|YP_814263.1| superfamily II DNA/RNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|238853834|ref|ZP_04644199.1| dead/deah box helicase domain protein [Lactobacillus gasseri 202-4]
 gi|116094673|gb|ABJ59825.1| Superfamily II DNA and RNA helicase [Lactobacillus gasseri ATCC
           33323]
 gi|238833529|gb|EEQ25801.1| dead/deah box helicase domain protein [Lactobacillus gasseri 202-4]
          Length = 464

 Score = 43.8 bits (101), Expect = 0.042,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 61/229 (26%), Gaps = 23/229 (10%)

Query: 42  GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101
           G    +FS+P + Q   + A+  +                + A  G GKT      +L +
Sbjct: 23  GLEKINFSKPTKVQAAVIPALLSNKS------------VVVQAATGSGKTHAYLLPLLNM 70

Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
           I     ++   +     +L N L+    +       R    +     +  G      +  
Sbjct: 71  IDENAPVTQAVVTAPSRELANQLYKVARQ------LRDASGLNISIEYLGGGNDRNRQIE 124

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG-TPDIINKSILGFFTELNP 220
              +     I           +    +  +  A   DEA           +    ++L+ 
Sbjct: 125 KAENRAPQLIIATPGRLHDFASKKVINLDNVKAFIIDEADMTLDMGFLSQMDEIISKLDK 184

Query: 221 NRFWIMTSN--TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267
                  S     +L  +     + P  D+            I +   +
Sbjct: 185 KVVLGAFSATIPVKLENFLRKYMSKP--DFIVIDNPAIIAPTIQNDLID 231


>gi|311111123|ref|ZP_07712520.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           gasseri MV-22]
 gi|311066277|gb|EFQ46617.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           gasseri MV-22]
          Length = 461

 Score = 43.8 bits (101), Expect = 0.042,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 61/229 (26%), Gaps = 23/229 (10%)

Query: 42  GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101
           G    +FS+P + Q   + A+  +                + A  G GKT      +L +
Sbjct: 20  GLEKINFSKPTKVQAAVIPALLSNKS------------VVVQAATGSGKTHAYLLPLLNM 67

Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
           I     ++   +     +L N L+    +       R    +     +  G      +  
Sbjct: 68  IDENAPVTQAVVTAPSRELANQLYKVARQ------LRDASGLNISIEYLGGGNDRNRQIE 121

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG-TPDIINKSILGFFTELNP 220
              +     I           +    +  +  A   DEA           +    ++L+ 
Sbjct: 122 KAENRAPQLIIATPGRLHDFASKKVINLDNVKAFIIDEADMTLDMGFLSQMDEIISKLDK 181

Query: 221 NRFWIMTSN--TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267
                  S     +L  +     + P  D+            I +   +
Sbjct: 182 KVVLGAFSATIPVKLENFLRKYMSKP--DFIVIDNPAIIAPTIQNDLID 228


>gi|300933478|ref|ZP_07148734.1| phage-associated protein [Corynebacterium resistens DSM 45100]
          Length = 453

 Score = 43.8 bits (101), Expect = 0.042,   Method: Composition-based stats.
 Identities = 36/279 (12%), Positives = 75/279 (26%), Gaps = 36/279 (12%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT--TLNAWMMLWLISTRPG 107
           +PH +Q +  + V+ H  +             I  G G+GKT  TL A   L L+ +   
Sbjct: 4   EPHDYQRQATQFVEDHPQA------------VILLGMGLGKTVITLTAIWNL-LLDSFQA 50

Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
             ++ +A      ++T  AE +KW  +        + S S       AE +   +  ++ 
Sbjct: 51  RRVLIVAP-LRVARDTWPAEATKWDHLAGLTIAVAVGSKSQRVDALAAEAMVTVINRENV 109

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
            + +      +   +T+          V  DE S   +   +               +  
Sbjct: 110 PWLV------KHLGNTW------PFDMVVIDELSSFKNHRAQRFKALAAVRPRLTRIVGL 157

Query: 228 SNTRRLNGWFYDIFNI--------PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279
           + T   NG                       Y+      +  +           G + ++
Sbjct: 158 TGTPAANGLMDLWAQFRLLDEGQRLGRFITHYRNRWFVPDRRNGQQIFTYKPAPGAEDEI 217

Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
                      +  +              +         
Sbjct: 218 YEAISDITLSMRTTDYLRLPELTVTTTLVDLEPKERKAY 256


>gi|257092005|ref|YP_003165646.1| ATP-dependent DNA helicase, RecQ family [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
 gi|257044529|gb|ACV33717.1| ATP-dependent DNA helicase, RecQ family [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
          Length = 1741

 Score = 43.8 bits (101), Expect = 0.042,   Method: Composition-based stats.
 Identities = 27/211 (12%), Positives = 57/211 (27%), Gaps = 16/211 (7%)

Query: 31   FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
            F+ R+ P     K L   + P  W  + +E ++      +           + AG G GK
Sbjct: 1072 FMRRWLPDR--DKELARQTTPQSW-HDIVEVLNNRQQREIVADERESTNVLVLAGPGSGK 1128

Query: 91   TTLNAWMMLWLISTRP--GMSIICIA---NSETQLKNTLWAEV-SKWLSMLPHRHWFEMQ 144
            T +    + +LI  R      I+ +A   ++  Q++  L   +      +          
Sbjct: 1129 TRVLVHRIAYLIRVRRENPHGILALAYNRHAAVQIRQRLGELIGDDARGVAVLTLHALAM 1188

Query: 145  SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT---HGMAVFNDEAS 201
             L+           +  +  D     +      +  P+               +  DE  
Sbjct: 1189 RLAGASLATQNGGTDGDLFKDIIDQAVNLLKGKDLPPEEADQQRERLLVGFRWILVDEYQ 1248

Query: 202  GTPDIINKSILG----FFTELNPNRFWIMTS 228
                   + I         + +         
Sbjct: 1249 DIAPEQYELISALAGRTRPDEDGRINLFAVG 1279


>gi|109638704|ref|YP_656576.1| putative ATPase subunit of terminase [Ranid herpesvirus 2]
 gi|109138191|gb|ABG25669.1| ORF68 [Ranid herpesvirus 2]
          Length = 720

 Score = 43.8 bits (101), Expect = 0.042,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 41/142 (28%), Gaps = 7/142 (4%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GK+T+ A ++         + I+  A+ +     T   ++  ++  L  R WF   
Sbjct: 172 PRRCGKSTIMAIIIS-AAIMFLEIDIVIQAHRKET-CLTFSNKIRTYVEQLQTRPWF-PS 228

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
              +H     AE     +   S        +               +   V  DEA    
Sbjct: 229 EFRIHSLQGTAEN----LIYTSDPAVKAKPSTCHFMASGSNSARGQNPDLVIVDEAGFVN 284

Query: 205 DIINKSILGFFTELNPNRFWIM 226
                S+L         +  I 
Sbjct: 285 KGAFLSVLPLMAVKGTKQIHIS 306


>gi|293383713|ref|ZP_06629621.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
           R712]
 gi|293387092|ref|ZP_06631657.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
           S613]
 gi|312906241|ref|ZP_07765253.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
           DAPTO 512]
 gi|312909587|ref|ZP_07768442.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
           DAPTO 516]
 gi|291078949|gb|EFE16313.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
           R712]
 gi|291083496|gb|EFE20459.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
           S613]
 gi|310627887|gb|EFQ11170.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
           DAPTO 512]
 gi|311290260|gb|EFQ68816.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
           DAPTO 516]
          Length = 439

 Score = 43.8 bits (101), Expect = 0.043,   Method: Composition-based stats.
 Identities = 28/253 (11%), Positives = 71/253 (28%), Gaps = 23/253 (9%)

Query: 94  NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
            A +++  +  R  ++ + I   +  ++ +++ ++   +       +F++    +     
Sbjct: 49  IAHIIV-QLIMRYPVNAVAIRFVDNTIELSIFEQIKWAIEEQGVSKYFKVNKSPMK---- 103

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSIL 212
                   +    +   I  R          +          + +E A    +   K+I 
Sbjct: 104 --------ITYKPRGNYIVFRGAQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTIT 155

Query: 213 GFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDWKRYQIDTRTVEGIDSGF 265
                          +  + N   R   W    +      E+   +    +    I   F
Sbjct: 156 NSLLRGELADGLFYKFFYSYNPPKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAF 215

Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
            E + +    +   A  E  G+     V  F     I+  +  + +   +  +  G D  
Sbjct: 216 IEEVNATRAKNPKRAEWEYDGKAIGSGVVPFDNLRVIKGCI-TDEMVANFDNIRNGLDF- 273

Query: 326 GEGGDKTVVVFRR 338
           G   D    V   
Sbjct: 274 GYATDPLAFVRWH 286


>gi|254172550|ref|ZP_04879225.1| reverse gyrase [Thermococcus sp. AM4]
 gi|214033479|gb|EEB74306.1| reverse gyrase [Thermococcus sp. AM4]
          Length = 1714

 Score = 43.8 bits (101), Expect = 0.043,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 65/228 (28%), Gaps = 17/228 (7%)

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126
                         +I A  G+GK+T  A+M ++  +   G     +  +   +  T+  
Sbjct: 89  QRTWVKRLLKGRSFSIIAPTGMGKSTFGAFMSVYYAT--KGKKSYIVVPTTPLVIQTI-- 144

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
              + +  +  R    +     H +    E  E    I+S  Y I   +      +    
Sbjct: 145 ---RKVQAIIERTGLNVNLAYYHGNLRKKEKEEMLAKIESGDYDILITSAQWLARNFDEK 201

Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246
               H   +F D                    N +R  ++   T  + G  ++I  +  +
Sbjct: 202 LKGRHFDFIFVD----------DVDAFLKASKNIDRSLLLLGFTEEIIGKAWEIIRLKKQ 251

Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294
             +    +++         +E I        +  R   +G        
Sbjct: 252 MARYLNGNSQDKNDRLKELNEAIEKIQREIEEFKRKNDIGIMIIASAT 299


>gi|302894383|ref|XP_003046072.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256726999|gb|EEU40359.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 1970

 Score = 43.8 bits (101), Expect = 0.043,   Method: Composition-based stats.
 Identities = 15/123 (12%), Positives = 31/123 (25%), Gaps = 10/123 (8%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               + +  G GKT      M W    RP   ++ IA  +  ++  +    ++    L  +
Sbjct: 1153 NVLLGSPTGSGKTVAAELAMWWAFRERPKSKVVYIAPMKALVRERVKDWGARLARPLGLK 1212

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               E+   +   +    +        +                             V  D
Sbjct: 1213 -LVELTGDNTPDTRTIQDADVIITTPEKWDGISRSWQTRGYV---------RQVSLVIID 1262

Query: 199  EAS 201
            E  
Sbjct: 1263 EIH 1265


>gi|220916408|ref|YP_002491712.1| Terminase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954262|gb|ACL64646.1| Terminase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 556

 Score = 43.8 bits (101), Expect = 0.043,   Method: Composition-based stats.
 Identities = 36/311 (11%), Positives = 82/311 (26%), Gaps = 52/311 (16%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW--LISTRPGMSI 110
            W+   +  V      +  +   T     I  G+G GK+ L A + L+   +       +
Sbjct: 69  PWEAFLIVNVFGFRRRDTGHRRFTFVNVWI--GKGNGKSALAAALGLYLAFMDGEQDAEV 126

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           +  A S    +                  W   + +     G   ++ ++     +    
Sbjct: 127 LTYAFSRENTR----------------HVWETAKQMLRRKQGTELDVAKEYEIELNAVTL 170

Query: 171 ITCRTYS--EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
              RT S  +         H +   A+  DE     D +  ++ G   +   +    +++
Sbjct: 171 YQARTNSVFKANSSNPDAQHGSRPSALIIDELHTVRDELWDTLKGAIVKRANSLMLTLST 230

Query: 229 NTRRLNGWFYDIFNIPL----------EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278
               ++   + ++              + +             ++ + +   S      D
Sbjct: 231 GGFDISSKGFKVYEYDRNILAGVEQDDDTFVLIYTAPTDDISDEANWRKANPSLEAGIID 290

Query: 279 VARIEI-----------LGQF-------PQQEVNNFIPHNYIEEAMSREAI--DDLYAPL 318
           + +               GQF              FI     +           D   P 
Sbjct: 291 IRKFRATARQALSVPGQRGQFLALHMNRWTGAAEGFIDVARWDALPRTTVQDCIDRGLPC 350

Query: 319 IMGCDIAGEGG 329
           ++G D A    
Sbjct: 351 VVGMDPADTND 361


>gi|158337223|ref|YP_001518398.1| phosphate starvation-induced protein PhoH [Acaryochloris marina
           MBIC11017]
 gi|158307464|gb|ABW29081.1| phosphate starvation-induced protein PhoH, putative [Acaryochloris
           marina MBIC11017]
          Length = 327

 Score = 43.8 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 50/188 (26%), Gaps = 28/188 (14%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR-----------GIGKTTLNAWMMLW 100
             WQ    + +          +     +  I + R           G GKT L A + + 
Sbjct: 99  EEWQDLQQDILATTRRGEQIRAKTLRQRQYIQSIRKYTLTFGIGPAGTGKTYLAAVLAVQ 158

Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
            +       +I    +                  L        Q ++ +    Y  L   
Sbjct: 159 ALLANEYERLILTRPAIE------------AGEKLGFLPGDLQQKVNPYLRPLYDALY-- 204

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220
            +    +  ++  R   E  P  ++     +   V  DEA  T     K      T L  
Sbjct: 205 ELIEAERITSLMERGTIEVAPLAYMRGRTLNRAFVILDEAQNTTPAQMKM---MLTRLGR 261

Query: 221 NRFWIMTS 228
           +   ++T 
Sbjct: 262 DSRMVITG 269


>gi|154688036|ref|YP_001423197.1| hypothetical protein RBAM_036370 [Bacillus amyloliquefaciens FZB42]
 gi|154353887|gb|ABS75966.1| conserved hypothetical protein [Bacillus amyloliquefaciens FZB42]
          Length = 1043

 Score = 43.8 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 67/245 (27%), Gaps = 45/245 (18%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFV--MRFFPWGIKGKPLEHFSQ--------- 50
            R +   Q+  ++L + + + +     + F+     F  G +       +Q         
Sbjct: 237 TRYLPVYQQT-KDLFDTVWNEKTQPVDEQFLQAYEEFQAGSQKVSASFAAQNSLYKTKMS 295

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P+  Q E +  +    +           K  I A  G GKT L A    +          
Sbjct: 296 PNAMQKEALRNLKKTRNEGET-------KAVIIAATGTGKTFLAA----FDFEQFKPNKY 344

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + +A+   +L         K  +                    ++ +             
Sbjct: 345 LFLAH-REELLTKAIETFQKVTNNHEDFGLLTGTKKERDKRFLFSTVQTLHKK------- 396

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
                      +T           +  DE         +++L +FT   P     +T+  
Sbjct: 397 -----------ETLESFSTDEFDYIVIDEFHHAEASTYQAVLNYFT---PKFLLGLTATP 442

Query: 231 RRLNG 235
            RL+G
Sbjct: 443 ERLDG 447


>gi|319891867|ref|YP_004148742.1| Phage terminase, large subunit [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161563|gb|ADV05106.1| Phage terminase, large subunit [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 424

 Score = 43.8 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 79/271 (29%), Gaps = 26/271 (9%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
           +N   ++  +   RG  K+   A   ++ +      +++ +       K + + ++    
Sbjct: 20  NNKNFYRV-VKGSRGSKKSRTTALNFIYRLMKYEWSNLLVVRRFSNTNKQSTYTDLKWAT 78

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
           + L   H F+    SL    +     +           IT  T                 
Sbjct: 79  NQLGVAHLFKFNE-SLPEITYKPTGQKILFRGLDDPLKITSITVDVGI-----------L 126

Query: 193 MAVFNDEASGTPD-----IINKSILGFFTELNPNRFWIMTSNTRRLNGW----FYDIFNI 243
              + +EA    +      + +SI G   E    +   +T N      W    F+D    
Sbjct: 127 CWAWFEEAYQIENFDKFSTVVESIRGSLDEPEFFKQITVTFNPWSERHWLKPTFFDEDTR 186

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
               +       R  E +D    +     Y  +   ARI   G++          +  +E
Sbjct: 187 LKNVYSN-TTTFRVNEWLDKVDVDRYEDLYRTNPRRARIVCDGEW-GVAEGLVYDNFVVE 244

Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334
           +    +        +  G D  G   D T +
Sbjct: 245 DFDWFQIYKKTQFKVH-GID-YGFTNDPTAL 273


>gi|118370404|ref|XP_001018403.1| SNF2 family N-terminal domain containing protein [Tetrahymena
           thermophila]
 gi|89300170|gb|EAR98158.1| SNF2 family N-terminal domain containing protein [Tetrahymena
           thermophila SB210]
          Length = 1547

 Score = 43.8 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 62/245 (25%), Gaps = 29/245 (11%)

Query: 43  KPLEHFSQ-PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101
           KP EHF      +QL+ +  +D      +N               G+GKT     ++  +
Sbjct: 661 KPPEHFQGTLKEYQLKGLRWLDNLYEQGINGILADEM--------GLGKTIQAISLITHI 712

Query: 102 ISTRPGMSI----ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
             T    +I    + IA S + L N    E+ K+   L    ++           +++  
Sbjct: 713 AGT---KNIWGPFLVIAPS-STLYN-WQQELKKFFPALKVLPYWGSLKQRKMIRKYFSAK 767

Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217
                            T  +                +  DEA    +I           
Sbjct: 768 N----LGLKSSPFHLVITSYQLVVSDEKTFQRIKWQYMILDEAQAIKNIN-SMRWKTLLS 822

Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277
            N     ++T     +     +++ +                     +    I     D 
Sbjct: 823 FNSRNKLLLTGTP--IQNTMAELWALL----HFIMPKLFDSHDQFQEWFSKDIEASSQDK 876

Query: 278 DVARI 282
                
Sbjct: 877 SQLNQ 881


>gi|51244266|ref|YP_064150.1| hypothetical protein DP0414 [Desulfotalea psychrophila LSv54]
 gi|50875303|emb|CAG35143.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 708

 Score = 43.8 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 21/188 (11%), Positives = 45/188 (23%), Gaps = 29/188 (15%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +WQ +                        +    G GKT + A    +L +  P   I 
Sbjct: 193 DQWQKKAAIETPEGAQR-------------VRGLAGSGKTVVLALKAAYLHAEHPEWDIA 239

Query: 112 CIANSETQLKNTLWAEVSKWL-----------SMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
              N+   L    +  V ++             +     W    +  ++ +   +  +  
Sbjct: 240 ITFNT-RSLSQQFFDLVERFSIEHSGDKPNFEKLHILHAWGSYSASGIYSTIADSLNVPA 298

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA---VFNDEASGTPDIINKSILGFFTE 217
                +K+       +     +      +        V  DEA   P    + +      
Sbjct: 299 MDFGTAKNQYGYNNAFHGACGELLTYAKSQPVELYDAVLIDEAQDLPVPFFQLVYLATKS 358

Query: 218 LNPNRFWI 225
                 W 
Sbjct: 359 P-KRIVWA 365


>gi|315041334|ref|XP_003170044.1| DEAD/DEAH box helicase [Arthroderma gypseum CBS 118893]
 gi|311346006|gb|EFR05209.1| DEAD/DEAH box helicase [Arthroderma gypseum CBS 118893]
          Length = 1936

 Score = 43.8 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 14/222 (6%), Positives = 58/222 (26%), Gaps = 31/222 (13%)

Query: 50   QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
            +P +WQ + ++ +D +                + A    GKT ++ + M  ++       
Sbjct: 844  EPDKWQRDVLDEIDAN------------RSLFVVAPTSAGKTFISFYAMKKVLQQDDNGV 891

Query: 110  IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
            ++ +A ++  +        +++     H         ++H   +          + +  +
Sbjct: 892  LVYVAPTKALVNQVAAEIQARFSKSFKHGGKSVW---AIHTRDYRINSPRGCQVLVTVPH 948

Query: 170  TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF------------TE 217
             +     +     ++    +     +  DE        +  +                  
Sbjct: 949  ILQIMLLAPANATSW----SCRIKRIIFDEIHCISQADDGVVWEQLLLLAPCPIIALSAT 1004

Query: 218  LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
            +   + +    ++ +               +   +       
Sbjct: 1005 VGNPQAFYKWLSSTQRANGIDITMIEHRHRYSDLRKYVYKPP 1046


>gi|194443211|ref|YP_002041983.1| hypothetical protein SNSL254_A2937 [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194401874|gb|ACF62096.1| putative conserved hypothetical protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 591

 Score = 43.8 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 41/337 (12%), Positives = 77/337 (22%), Gaps = 76/337 (22%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             W  E +     H   N+           I   R IG T   A+             I 
Sbjct: 140 DTWAEEHLFEYQKHLRRNIGQLVRN-----ILKSRQIGATWYFAFEAFENAVMTGDPQIF 194

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A+        + AE  +   +     +F +              L       +     
Sbjct: 195 LSASK-------VQAEYFRSYIVNIAEQYFGITLTGNPIRLSNGAELRFLSTNKN----- 242

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSN 229
           T ++YS                 ++ DE    P+   +N+      T           S 
Sbjct: 243 TAQSYSGH---------------LYCDEYFWVPNFTKLNEVASAMATHDKWRT--TYFST 285

Query: 230 TRRLNG-----WFYDIFNIPLEDWKRYQIDTRT--------VEGIDSGFHEGIISRYGLD 276
                      W  D +    +     +  T                 +   +       
Sbjct: 286 PSAKTHQAYPFWTGDEWKQGSKKRTAIKFPTFDELRDGGRVCPDGQWRYVITMEDAIAGG 345

Query: 277 SDVARIE--------------ILGQFPQQEVNNFIPHNYIEEA-----MSREAIDDLYAP 317
            ++A IE               +  F     ++    + +E         ++   D   P
Sbjct: 346 FNLANIEKLRNRYNTATFNMLYMCVFVD-NKDSVFSFSDLEACGVEVDTWQDHNPDAARP 404

Query: 318 L----IMG-CDIAGEGGDKTVVVFRRGNIIEHIFDWS 349
                + G  D A  G D +  V      +  +  + 
Sbjct: 405 FGDRPVWGGFDPARSG-DLSCFVIV-APPMFAVEKFR 439


>gi|169598618|ref|XP_001792732.1| hypothetical protein SNOG_02115 [Phaeosphaeria nodorum SN15]
 gi|160704433|gb|EAT90327.2| hypothetical protein SNOG_02115 [Phaeosphaeria nodorum SN15]
          Length = 1992

 Score = 43.8 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 15/123 (12%), Positives = 31/123 (25%), Gaps = 10/123 (8%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               + +  G GKT      M W    +PG  ++ IA  +  ++  +     +    +  R
Sbjct: 1149 NVLLGSPTGSGKTVAAELAMWWAFREKPGSKVVYIAPMKALVRERVQDWGKRLAGPMGLR 1208

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               E+   +   +    +        +                             V  D
Sbjct: 1209 -LVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRGYV---------RQVSLVIID 1258

Query: 199  EAS 201
            E  
Sbjct: 1259 EIH 1261


>gi|149186592|ref|ZP_01864904.1| hypothetical protein ED21_31944 [Erythrobacter sp. SD-21]
 gi|148829819|gb|EDL48258.1| hypothetical protein ED21_31944 [Erythrobacter sp. SD-21]
          Length = 1123

 Score = 43.8 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 52/209 (24%), Gaps = 12/209 (5%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           I    G GKT  +A M+L L+    G  I   +NS   + N L       L    H H  
Sbjct: 741 IQGPPGTGKTYTSAHMILALLKA--GKRIGVSSNSHKAINNLLGKVEKVALEDGYHIHGA 798

Query: 142 EMQS---LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
           +  S      +  G   E +  +  I+   Y +   T                   +  D
Sbjct: 799 KKASAGDKDSYLRGGMLEDVTDAKDIEDGDYELVGGTAWLFARGDLD----QRFDYLIVD 854

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
           EA         ++      +      +      +         +         Q +    
Sbjct: 855 EAGQVSLGHLLAMGASAKNIILVGDQMQLGQPIQGAHPGESGMSTLD---YLLQDEATIA 911

Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILGQ 287
                           +   ++     G+
Sbjct: 912 PDRGILLDTSWRMHLDISGFISAAVYDGR 940


>gi|312902795|ref|ZP_07761999.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
           TX0635]
 gi|310633849|gb|EFQ17132.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
           TX0635]
 gi|315149046|gb|EFT93062.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
           TX4244]
 gi|315167459|gb|EFU11476.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
           TX1341]
 gi|315576726|gb|EFU88917.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
           TX0630]
          Length = 429

 Score = 43.8 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 28/253 (11%), Positives = 71/253 (28%), Gaps = 23/253 (9%)

Query: 94  NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
            A +++  +  R  ++ + I   +  ++ +++ ++   +       +F++    +     
Sbjct: 49  IAHIIV-QLIMRYPVNAVAIRYVDNTIELSIFEQIKWAIEEQGVSKYFKVNKSPMK---- 103

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSIL 212
                   +    +   I  R          +          + +E A    +   K+I 
Sbjct: 104 --------ITYKPRGNYIVFRGAQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTIT 155

Query: 213 GFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDWKRYQIDTRTVEGIDSGF 265
                          +  + N   R   W    +      E+   +    +    I   F
Sbjct: 156 NSLLRGELADGLFYKFFYSYNPPKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAF 215

Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
            E + +    +   A  E  G+     V  F     I+  +  + +   +  +  G D  
Sbjct: 216 IEEVNATRAKNPKRAEWEYDGKAIGSGVVPFDNLRVIKGCI-TDEMAANFDNIRNGLDF- 273

Query: 326 GEGGDKTVVVFRR 338
           G   D    V   
Sbjct: 274 GYATDPLAFVRWH 286


>gi|229545399|ref|ZP_04434124.1| terminase large subunit G2p [Enterococcus faecalis TX1322]
 gi|229549646|ref|ZP_04438371.1| terminase large subunit G2p [Enterococcus faecalis ATCC 29200]
 gi|255972343|ref|ZP_05422929.1| terminase large subunit G2p [Enterococcus faecalis T1]
 gi|229305311|gb|EEN71307.1| terminase large subunit G2p [Enterococcus faecalis ATCC 29200]
 gi|229309506|gb|EEN75493.1| terminase large subunit G2p [Enterococcus faecalis TX1322]
 gi|255963361|gb|EET95837.1| terminase large subunit G2p [Enterococcus faecalis T1]
 gi|315028537|gb|EFT40469.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
           TX4000]
          Length = 429

 Score = 43.8 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 28/253 (11%), Positives = 71/253 (28%), Gaps = 23/253 (9%)

Query: 94  NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
            A +++  +  R  ++ + I   +  ++ +++ ++   +       +F++    +     
Sbjct: 49  IAHIIV-QLIMRYPVNAVAIRYVDNTIELSIFEQIKWAIEEQGVSKYFKVNKSPMK---- 103

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSIL 212
                   +    +   I  R          +          + +E A    +   K+I 
Sbjct: 104 --------ITYKPRGNYIVFRGAQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTIT 155

Query: 213 GFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDWKRYQIDTRTVEGIDSGF 265
                          +  + N   R   W    +      E+   +    +    I   F
Sbjct: 156 NSLLRGELADGLFYKFFYSYNPPKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAF 215

Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
            E + +    +   A  E  G+     V  F     I+  +  + +   +  +  G D  
Sbjct: 216 IEEVNATRAKNPKRAEWEYDGKAIGSGVVPFDNLRVIKGCI-TDEMAANFDNIRNGLDF- 273

Query: 326 GEGGDKTVVVFRR 338
           G   D    V   
Sbjct: 274 GYATDPLAFVRWH 286


>gi|109948104|ref|YP_665332.1| phage-related CUP0950-like protein [Helicobacter acinonychis str.
           Sheeba]
 gi|109715325|emb|CAK00333.1| phage-related CUP0950-like protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 517

 Score = 43.8 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 52/167 (31%), Gaps = 14/167 (8%)

Query: 12  EQELHEMLMHAECVLSFKNFVMRFFPWG-IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70
           EQ L E+ +       F  F+     W   + KP         W + ++  V      N 
Sbjct: 4   EQALRELALRELARRDFFQFLRL--KWERYENKPFL-----DNWHIRYLCKVLECTQPNT 56

Query: 71  NNSNPTIFKCAISAGRGIGKTTLNAW-MMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129
           +     I +  ++     GKT + A   + W +       I  I+ S     + L  +++
Sbjct: 57  SAHGELIRRLIVNMPPSYGKTEIIARCFIAWSLGKDRSKKIFYISYS-----DELCRKIA 111

Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
             +  L    +++                E  +      +  T ++ 
Sbjct: 112 NQVRDLMDSFFYKSVFFDEPLEYLQNNAREFILREGGGLFVTTLKSA 158


>gi|257090295|ref|ZP_05584656.1| terminase large subunit [Enterococcus faecalis CH188]
 gi|256999107|gb|EEU85627.1| terminase large subunit [Enterococcus faecalis CH188]
          Length = 430

 Score = 43.8 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 28/253 (11%), Positives = 71/253 (28%), Gaps = 23/253 (9%)

Query: 94  NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
            A +++  +  R  ++ + I   +  ++ +++ ++   +       +F++    +     
Sbjct: 50  IAHIIV-QLIMRYPVNAVAIRYVDNTIELSIFEQIKWAIEEQGVSKYFKVNKSPMK---- 104

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSIL 212
                   +    +   I  R          +          + +E A    +   K+I 
Sbjct: 105 --------ITYKPRGNYIVFRGAQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTIT 156

Query: 213 GFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDWKRYQIDTRTVEGIDSGF 265
                          +  + N   R   W    +      E+   +    +    I   F
Sbjct: 157 NSLLRGELADGLFYKFFYSYNPPKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAF 216

Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
            E + +    +   A  E  G+     V  F     I+  +  + +   +  +  G D  
Sbjct: 217 IEEVNATRAKNPKRAEWEYDGKAIGSGVVPFDNLRVIKGCI-TDEMAANFDNIRNGLDF- 274

Query: 326 GEGGDKTVVVFRR 338
           G   D    V   
Sbjct: 275 GYATDPLAFVRWH 287


>gi|312220092|emb|CBY00034.1| similar to activating signal cointegrator 1 complex subunit 3
            [Leptosphaeria maculans]
          Length = 2000

 Score = 43.8 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 14/123 (11%), Positives = 31/123 (25%), Gaps = 10/123 (8%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               + +  G GKT      M W    +PG  ++ IA  +  ++  +     +    +  +
Sbjct: 1159 NVLLGSPTGSGKTVAAELAMWWAFREKPGSKVVYIAPMKALVRERVQDWGKRLAGPMGLK 1218

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               E+   +   +    +        +                             V  D
Sbjct: 1219 -LVELTGDNTPDTRTIRDADVIITTPEKWDGISRSWQTRGYV---------RQVSLVIID 1268

Query: 199  EAS 201
            E  
Sbjct: 1269 EIH 1271


>gi|183220165|ref|YP_001838161.1| putative helicase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189910285|ref|YP_001961840.1| DNA or RNA helicase of superfamily II [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167774961|gb|ABZ93262.1| DNA or RNA helicase of superfamily II [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167778587|gb|ABZ96885.1| Putative helicase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 1046

 Score = 43.8 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 71/217 (32%), Gaps = 29/217 (13%)

Query: 23  ECVLSFKNFVMRFFPWGIKGK-PLEHFSQ--PHRWQLEFMEAVDVHCHSNVNNSNPTIFK 79
           +    F  F      +      P   F++  P  +Q   +E +        N +      
Sbjct: 285 DSKADFNRFKNALDTYKKFDSIPSAFFAELTPRVYQERILEELIAERRLGNNKNL----- 339

Query: 80  CAISAGRGIGKTTLNAW-MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
             I A  G GKT ++A+    + I      S++ IA+ +  L+  L              
Sbjct: 340 --IVAATGTGKTVISAFDYRRYSIINNSKPSLLYIAHRKEILEQAL-------------S 384

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
            +  +       S +   +   S      H   + ++ + ++   +     +    +  D
Sbjct: 385 CFRMVLQDQNFGSLFVDGINPFSGTEAPLHIFASIQSINSKQI--WKILGKSFFNFIIID 442

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
           E   +     +SI   F+E  P     +T+   R++G
Sbjct: 443 EVHHSSASSYRSI---FSEFTPEILLGLTATPERMDG 476


>gi|119493007|ref|XP_001263759.1| DEAD/DEAH box helicase, putative [Neosartorya fischeri NRRL 181]
 gi|119411919|gb|EAW21862.1| DEAD/DEAH box helicase, putative [Neosartorya fischeri NRRL 181]
          Length = 1797

 Score = 43.8 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 73/275 (26%), Gaps = 27/275 (9%)

Query: 25  VLSFKNFVMR---FFPWGIKGKPLEHFSQ--PHRWQLEFMEAVDVHCHSNVNNSNPTIFK 79
            L F+ F +     F     G   +      P +WQ + ++ +D +              
Sbjct: 714 PLDFQAFQLLHCGPFMDRQTGAKPDDRVGFEPDKWQKDVLDELDKN------------HS 761

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             + A    GKT ++ + M  ++       ++ +A ++  +        +++    P   
Sbjct: 762 VFVVAPTSAGKTFISFYAMSKVLQEDDTGVLVYVAPTKALVNQIGAEIHARFRKRYPGPE 821

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                  +           +  + +    + +     S     T+          +  DE
Sbjct: 822 QTVWAISTRDVRINDPLKCQILVTV---PHFLQIMLLSSSNAITW----APRVKCIIFDE 874

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIM---TSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256
                   +  +      L P R   +     N      W     N      K  Q   R
Sbjct: 875 IHSIGHTEDGLVWEQLLLLAPCRIIALSATVGNPSEFADWLQSTQNNMGVTLKLIQHTQR 934

Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
             +     +        GL     +  +  +F + 
Sbjct: 935 YSDLRKYFYMPADRPFEGLSRSKHKGRLEPKFIRG 969


>gi|219847371|ref|YP_002461804.1| DEAD/DEAH box helicase domain-containing protein [Chloroflexus
           aggregans DSM 9485]
 gi|219541630|gb|ACL23368.1| DEAD/DEAH box helicase domain protein [Chloroflexus aggregans DSM
           9485]
          Length = 550

 Score = 43.8 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 24/201 (11%), Positives = 46/201 (22%), Gaps = 25/201 (12%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
            + +P   Q + +                        A  G GKT   A  M+  ++  P
Sbjct: 21  GYDEPTPIQAQAI------------PLLLAGRDVIAQAQTGTGKTAAFALPMIEQVTDEP 68

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
            +  + +A +         A             +   ++L + P      +  Q  G+  
Sbjct: 69  VVQALVLAPTRELAVQVAEA----------VHRYGRHRALRVLPIYGGQPIERQLRGLAQ 118

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK---SILGFFTELNPNRF 223
               +                   H   V  DEA    D+        +   T       
Sbjct: 119 GVQVVVGTPGRVLDHLRRGTLRFDHLRLVVLDEADEMLDMGFAEELEAILQLTPAERQTA 178

Query: 224 WIMTSNTRRLNGWFYDIFNIP 244
               +    +          P
Sbjct: 179 LFSATLPPAVQSLTLRYTRQP 199


>gi|319893149|ref|YP_004150024.1| putative helicase [Staphylococcus pseudintermedius HKU10-03]
 gi|317162845|gb|ADV06388.1| putative helicase [Staphylococcus pseudintermedius HKU10-03]
          Length = 944

 Score = 43.8 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 51/154 (33%), Gaps = 12/154 (7%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           + AG G GKT + + M++       G+S + I +S++      W    +    L    + 
Sbjct: 458 LCAGTGFGKTVIASKMIV-----EKGVSTLIIVHSKSLAAQ--WKSQIETFVDLEDDPFP 510

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
           E               + Q                +    D      N +GM V  DEA 
Sbjct: 511 EYTE-KGRLKKKDKIGMIQGGKSKRSKNIDIALFQTLTTMDNLEDVFNDYGM-VIVDEAH 568

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
                  + +     ++N    + +T+  +R +G
Sbjct: 569 HVAAKTFEDV---MAKVNSRYVYGLTATPKREDG 599


>gi|7649878|dbj|BAA94156.1| large subunit terminase [Enterobacteria phage VT2-Sakai]
          Length = 449

 Score = 43.8 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 29/290 (10%), Positives = 64/290 (22%), Gaps = 40/290 (13%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEA 61
           PR     +  E E    +M    + +    +   +    +   L  F      Q +   +
Sbjct: 8   PRCDEPSEMTEAEQRLFIMTK--LSNPWWRLNHLYKIQNEKGELVTFRM-RPAQRQLFRS 64

Query: 62  VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121
           +                K  I   R +G +T     +L      P +    +A  +    
Sbjct: 65  MHN--------------KNIILKARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQAAS 110

Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
                +++     LP         +               +            ++     
Sbjct: 111 EIFRTKIAVPFDHLPDWLRASFTIVERRSGASG-----GYILFGHGSSIQVATSFRSGTV 165

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
                  +           +  P    +   G    ++        S    + G FY++ 
Sbjct: 166 QRLHISEHGKI-------CAKYPAKAKELRTGTLNAVSDECIIFDESTAEGVGGDFYEMS 218

Query: 242 NIPLE-----------DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280
           N   E           D+K +           +   E  +          
Sbjct: 219 NRAQEITASGLLLTAQDYKFHFYAWWQDPKYSARVPESGLKLSREKMTYF 268


>gi|322789902|gb|EFZ15034.1| hypothetical protein SINV_01618 [Solenopsis invicta]
          Length = 1808

 Score = 43.8 bits (101), Expect = 0.047,   Method: Composition-based stats.
 Identities = 24/221 (10%), Positives = 51/221 (23%), Gaps = 28/221 (12%)

Query: 46   EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
             +F Q +  Q +   A+                   + A  G GKTT+  + +L L++  
Sbjct: 991  YNFPQFNPIQTQVFNAIYNSDD-----------NVFVGAPTGSGKTTIAEFAVLRLLTQN 1039

Query: 106  PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
            P    + + + E   +       +K+   L  +                       +   
Sbjct: 1040 PEGRCVYMVSKEALAELVYVNWATKFGQKLGRKVVLLSGETGTDLK----------LLAK 1089

Query: 166  SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL------- 218
             +    T   +           +  +      DE           +    +         
Sbjct: 1090 GQIIITTADKWDVLSRRWKQRKNVQNIQLFIVDELQLIGGEEGPVLEVACSRARYISSQL 1149

Query: 219  NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
            +     I  S +             P      +    R V 
Sbjct: 1150 DKPTRIIALSASLADAKDAAQWLGAPAAATFNFHPSVRPVP 1190


>gi|307295867|ref|ZP_07575699.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
           TX0411]
 gi|306496198|gb|EFM65777.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
           TX0411]
 gi|315169423|gb|EFU13440.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
           TX1342]
          Length = 429

 Score = 43.8 bits (101), Expect = 0.047,   Method: Composition-based stats.
 Identities = 28/253 (11%), Positives = 71/253 (28%), Gaps = 23/253 (9%)

Query: 94  NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
            A +++  +  R  ++ + I   +  ++ +++ ++   +       +F++    +     
Sbjct: 49  IAHIIV-QLIMRYPVNAVAIRYVDNTIELSIFEQIKWAIEEQGVSKYFKVNKSPMK---- 103

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSIL 212
                   +    +   I  R          +          + +E A    +   K+I 
Sbjct: 104 --------ITYKPRGNYIVFRGAQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTIT 155

Query: 213 GFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDWKRYQIDTRTVEGIDSGF 265
                          +  + N   R   W    +      E+   +    +    I   F
Sbjct: 156 NSLLRGELADGLFYKFFYSYNPPKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAF 215

Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
            E + +    +   A  E  G+     V  F     I+  +  + +   +  +  G D  
Sbjct: 216 IEEVNATRAKNPKRAEWEYDGKAIGSGVVPFDNLRVIKGCI-TDEMAANFDNIRNGLDF- 273

Query: 326 GEGGDKTVVVFRR 338
           G   D    V   
Sbjct: 274 GYATDPLAFVRWH 286


>gi|256961403|ref|ZP_05565574.1| terminase large subunit [Enterococcus faecalis Merz96]
 gi|256951899|gb|EEU68531.1| terminase large subunit [Enterococcus faecalis Merz96]
          Length = 432

 Score = 43.8 bits (101), Expect = 0.047,   Method: Composition-based stats.
 Identities = 28/253 (11%), Positives = 71/253 (28%), Gaps = 23/253 (9%)

Query: 94  NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
            A +++  +  R  ++ + I   +  ++ +++ ++   +       +F++    +     
Sbjct: 42  IAHIIV-QLIMRYPVNAVAIRFVDNTIELSIFEQIKWAIEEQGVSKYFKVNKSPMK---- 96

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSIL 212
                   +    +   I  R          +          + +E A    +   K+I 
Sbjct: 97  --------ITYKPRGNYIVFRGAQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTIT 148

Query: 213 GFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDWKRYQIDTRTVEGIDSGF 265
                          +  + N   R   W    +      E+   +    +    I   F
Sbjct: 149 NSLLRGELADGLFYKFFYSYNPPKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAF 208

Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
            E + +    +   A  E  G+     V  F     I+  +  + +   +  +  G D  
Sbjct: 209 IEEVNATRAKNPKRAEWEYDGKAIGSGVVPFDNLRVIKGCI-TDEMVANFDNIRNGLDF- 266

Query: 326 GEGGDKTVVVFRR 338
           G   D    V   
Sbjct: 267 GYATDPLAFVRWH 279


>gi|124008727|ref|ZP_01693417.1| hypothetical protein M23134_07327 [Microscilla marina ATCC 23134]
 gi|123985803|gb|EAY25676.1| hypothetical protein M23134_07327 [Microscilla marina ATCC 23134]
          Length = 536

 Score = 43.8 bits (101), Expect = 0.047,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 70/258 (27%), Gaps = 22/258 (8%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
            AG+G GKT     +   LIS  P +     AN++ QL ++    V      L    + E
Sbjct: 32  MAGQGAGKTHGAGLVSFRLISNFPRVFGFMGANTDMQLTDSTLYRVFLVWKDLGLEEYDE 91

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE-----ERPDTFVGPHNTHGMAVFN 197
                 +  G          G   K Y      ++         + +             
Sbjct: 92  HTGEGDYVVGTQPPRHFSREGHAFKSYRNKISFWNGCVVFIGSLENYKAHDGKEFAWAIL 151

Query: 198 DEASGTPDI-INKSILGFFTELN-----PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY 251
           DE   T +  + + ILG   +            + +      +      FN         
Sbjct: 152 DETKDTREEAVQEVILGRLRQQGLYISQTRAGALTSEEYDEGSSLANLPFNPLYIFTSPA 211

Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-----------FPQQEVNNFIPHN 300
           ++         + + E I  +        + ++ G              +   +N+I   
Sbjct: 212 KVPWINDWFELNEYEEEIKVKIYDPPQYFKKKVGGDSKFVVISATHLNLKNLPSNYIKKQ 271

Query: 301 YIEEAMSREAIDDLYAPL 318
               A  R  +     PL
Sbjct: 272 EANLASHRHGMLIYGDPL 289


>gi|298707554|emb|CBJ30138.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 2343

 Score = 43.8 bits (101), Expect = 0.047,   Method: Composition-based stats.
 Identities = 23/202 (11%), Positives = 48/202 (23%), Gaps = 31/202 (15%)

Query: 45   LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            L  +   +  Q +    +     S             + A  G GKT +    ++ +++ 
Sbjct: 1452 LYRYQHFNPIQTQLFHVLYHSDES-----------VLLGAPTGSGKTAVAEIAIMRMLNQ 1500

Query: 105  RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW---FEMQSLSLHPSGWYAELLEQS 161
             PG   + +A  +   +  L      W      +      E+                  
Sbjct: 1501 HPGAKAVYVAPLKALARERL----KDWREKFGKKMDMGVLELTGDHTPDGDALRRASIIV 1556

Query: 162  MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221
               +            +   DT           V  DE     +     +    +     
Sbjct: 1557 TTPEKWDGVTRGWKSRDYVKDTG---------LVIMDEIHLLGEDRGPVLEVIVS----R 1603

Query: 222  RFWIMTSNTRRLNGWFYDIFNI 243
              +I  S  +R  G  +     
Sbjct: 1604 MRYIAASAGKRDTGTGHRQVRF 1625


>gi|153811345|ref|ZP_01964013.1| hypothetical protein RUMOBE_01737 [Ruminococcus obeum ATCC 29174]
 gi|149832472|gb|EDM87556.1| hypothetical protein RUMOBE_01737 [Ruminococcus obeum ATCC 29174]
          Length = 579

 Score = 43.8 bits (101), Expect = 0.048,   Method: Composition-based stats.
 Identities = 38/299 (12%), Positives = 86/299 (28%), Gaps = 60/299 (20%)

Query: 77  IFKCA-ISAGRGIGKTTLNAWMMLWL--ISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
            F+ + +  GR  GK+ LN  +  +           I C A  + Q    ++ E+ K++ 
Sbjct: 97  RFRTSYVQLGRQNGKSFLNGILAAYYGNFEKYKYGQIYCTATKKDQSL-IVFNEIVKFIR 155

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH--NTH 191
                                 +L E     +         T+S+ +  +          
Sbjct: 156 S-------------------DHDLDECFNIHEHNSTIDCLLTHSKIKALSGDTKSIDGFR 196

Query: 192 GMAVFNDEA-SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF--------- 241
                 DE  +   D + K + G   ++      ++T+    L    Y ++         
Sbjct: 197 PYLGIVDEYHAHKNDQMYKLLEGGIKKMKSALISVITTAGFDLKSPCYALYEYCVKVLKG 256

Query: 242 --NIPLEDWKRYQIDTRTVEGIDSGFH--------------------EGIISRYGLDSDV 279
             +   +     Q+D          +                     E      G     
Sbjct: 257 IAHNDSQFIYIAQMDETDDMWTPKNWIKANPILQYDLEALENMIPIAETAKEMGGSSLRD 316

Query: 280 ARIEILGQFPQQEVNNFI-PHNYIEEAMSREAIDD-LYAPLIMGCDIAGEGGDKTVVVF 336
             ++ L  + Q   + ++      +   +++ ++D       +G D++  GGD T +  
Sbjct: 317 FIVKQLNMWIQWTNDVYLKDMELWQNGATKKTLEDFRGQKCYVGLDLS-AGGDLTSLAI 374


>gi|46124035|ref|XP_386571.1| hypothetical protein FG06395.1 [Gibberella zeae PH-1]
          Length = 1968

 Score = 43.8 bits (101), Expect = 0.048,   Method: Composition-based stats.
 Identities = 15/123 (12%), Positives = 30/123 (24%), Gaps = 10/123 (8%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               + +  G GKT      M W    RP   ++ IA  +  ++  +     +    L  +
Sbjct: 1152 NVLLGSPTGSGKTVAAELAMWWAFRERPKSKVVYIAPMKALVRERVKDWGVRLARPLGLK 1211

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               E+   +   +    +        +                             V  D
Sbjct: 1212 -LVELTGDNTPDTRTIQDADIIITTPEKWDGISRSWQTRGYV---------RQVSLVIID 1261

Query: 199  EAS 201
            E  
Sbjct: 1262 EIH 1264


>gi|269959614|ref|ZP_06173995.1| Superfamily II DNA and RNA helicase [Vibrio harveyi 1DA3]
 gi|269835672|gb|EEZ89750.1| Superfamily II DNA and RNA helicase [Vibrio harveyi 1DA3]
          Length = 407

 Score = 43.8 bits (101), Expect = 0.048,   Method: Composition-based stats.
 Identities = 44/318 (13%), Positives = 87/318 (27%), Gaps = 50/318 (15%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           +      + +P + Q E +                       SA  G GKT       L 
Sbjct: 16  EAIEEMGYERPTKIQAEAIPQALDG------------RDILASAPTGTGKTAAFVLPALQ 63

Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
            +   P        I+ +  +         A+ ++ L+     + F +     +      
Sbjct: 64  YLQDFPRRKPGPARILILTPTRELAMQV--ADQARALAKNTKLNIFTITGGVQYQEHADI 121

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
               Q +        +                       +  DEA    D+     +   
Sbjct: 122 LATTQDI--------VVATPGRLREYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRL 173

Query: 216 TELNPNRFWIMTSNTR----RLNGWFYDIFNIP---------LEDWKRYQIDTR-TVEGI 261
           +     R   +  +       + G+  D+ N P          E  K  Q   R      
Sbjct: 174 SNECRWRKQTLLFSATLEGKGVEGFTADLLNEPAEIDAKSPLRERKKIAQWYHRADDAEH 233

Query: 262 DSGFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP-- 317
                + II+     + V     E L +   Q  +  IP ++I+  M ++  ++  A   
Sbjct: 234 KLALLKHIITEQAERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAIARFR 293

Query: 318 -----LIMGCDIAGEGGD 330
                +++  D+A  G D
Sbjct: 294 EGTVNVLLATDVAARGID 311


>gi|300860887|ref|ZP_07106974.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
           TUSoD Ef11]
 gi|295113272|emb|CBL31909.1| phage terminase, large subunit, PBSX family [Enterococcus sp. 7L76]
 gi|300849926|gb|EFK77676.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
           TUSoD Ef11]
          Length = 422

 Score = 43.8 bits (101), Expect = 0.048,   Method: Composition-based stats.
 Identities = 28/253 (11%), Positives = 71/253 (28%), Gaps = 23/253 (9%)

Query: 94  NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
            A +++  +  R  ++ + I   +  ++ +++ ++   +       +F++    +     
Sbjct: 42  IAHIIV-QLIMRYPVNAVAIRYVDNTIELSIFEQIKWAIEEQGVSKYFKVNKSPMK---- 96

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSIL 212
                   +    +   I  R          +          + +E A    +   K+I 
Sbjct: 97  --------ITYKPRGNYIVFRGAQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTIT 148

Query: 213 GFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDWKRYQIDTRTVEGIDSGF 265
                          +  + N   R   W    +      E+   +    +    I   F
Sbjct: 149 NSLLRGELADGLFYKFFYSYNPPKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAF 208

Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
            E + +    +   A  E  G+     V  F     I+  +  + +   +  +  G D  
Sbjct: 209 IEEVNATRAKNPKRAEWEYDGKAIGSGVVPFDNLRVIKGCI-TDEMAANFDNIRNGLDF- 266

Query: 326 GEGGDKTVVVFRR 338
           G   D    V   
Sbjct: 267 GYATDPLAFVRWH 279


>gi|262200363|ref|YP_003271571.1| NERD domain-containing protein [Gordonia bronchialis DSM 43247]
 gi|262083710|gb|ACY19678.1| NERD domain protein [Gordonia bronchialis DSM 43247]
          Length = 550

 Score = 43.8 bits (101), Expect = 0.048,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 45/167 (26%), Gaps = 5/167 (2%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
           +    +     + + ++   + +  I  G G GKT L   +      +R G  +  I  S
Sbjct: 200 DATAEIITEQQAVILSAISKLSRVEIRGGAGSGKTFLA--LEQARRLSRAGQRVALICYS 257

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
                       S W       +  E   L +                 ++ +  T    
Sbjct: 258 HGLASYFT-RITSHWSRREQPAYIGEFHDLGITWGASAGPDESVRTQEAAEFWEHTLPHQ 316

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
             E  +     H     A+  DEA    D     +L    +   +  
Sbjct: 317 MVELAEALPPGHR--FDAIVIDEAQDFADDWWLPLLACLRDPGTSGI 361


>gi|83649379|ref|YP_437814.1| Mu-like prophage FluMu protein gp28 [Hahella chejuensis KCTC 2396]
 gi|83637422|gb|ABC33389.1| Mu-like prophage FluMu protein gp28 [Hahella chejuensis KCTC 2396]
          Length = 581

 Score = 43.8 bits (101), Expect = 0.048,   Method: Composition-based stats.
 Identities = 38/319 (11%), Positives = 80/319 (25%), Gaps = 68/319 (21%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
               + +        +++     +  + + R IG T   AW       T     I   A 
Sbjct: 137 ETIRKELFYDYQHRWHDNKSQRTRFILKS-RQIGATYYFAWEAFQDAITSGDNQIFLSA- 194

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
           S +Q  +   A + K+                        +++  S G + +  +   RT
Sbjct: 195 SRSQA-DIFKAYILKFAREY------------FDTELKGVDVIPLSNGAELRFVSTNGRT 241

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW--IMTSNTRRL 233
                     G H      ++ DE    PD     +    + +  ++ W     S     
Sbjct: 242 A--------QGYHGH----LYIDEVFWIPD--FDRLNKLASGMAAHKKWRKTYFSTPSVK 287

Query: 234 NGWFYDIFNIPL-------------------------EDWKRYQIDTRTVEGIDSGFHEG 268
           +   Y +++                            +   R  +             + 
Sbjct: 288 SHGAYTLWSGERYNESRRHKVEFDLSRAALREGQLGPDKVWRNVVTVEDAANQGCDLFDI 347

Query: 269 IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS-----------REAIDDLYAP 317
              +            +  F +  + +    + +                R+       P
Sbjct: 348 DELKQEYTEAEFNNLFMCAFMEAGL-SVFKLDDLLSCAVCSGEVWPDFKPRQPRPFANYP 406

Query: 318 LIMGCDIAGEGGDKTVVVF 336
           + +G D A  G   TVVV 
Sbjct: 407 VWLGYDPARTGDRSTVVVV 425


>gi|307272791|ref|ZP_07554038.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
           TX0855]
 gi|307275955|ref|ZP_07557088.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
           TX2134]
 gi|306507285|gb|EFM76422.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
           TX2134]
 gi|306510405|gb|EFM79428.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
           TX0855]
          Length = 429

 Score = 43.8 bits (101), Expect = 0.049,   Method: Composition-based stats.
 Identities = 28/253 (11%), Positives = 71/253 (28%), Gaps = 23/253 (9%)

Query: 94  NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
            A +++  +  R  ++ + I   +  ++ +++ ++   +       +F++    +     
Sbjct: 49  IAHIIV-QLIMRYPVNAVAIRYVDNTIELSIFEQIKWAIEEQGVSKYFKVNKSPMK---- 103

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSIL 212
                   +    +   I  R          +          + +E A    +   K+I 
Sbjct: 104 --------ITYKPRGNYIVFRGAQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTIT 155

Query: 213 GFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDWKRYQIDTRTVEGIDSGF 265
                          +  + N   R   W    +      E+   +    +    I   F
Sbjct: 156 NSLLRGELADGLFYKFFYSYNPPKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAF 215

Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
            E + +    +   A  E  G+     V  F     I+  +  + +   +  +  G D  
Sbjct: 216 IEEVNATRAKNPKRAEWEYDGKAIGSGVVPFDNLRVIKGCI-TDEMAANFDNIRNGLDF- 273

Query: 326 GEGGDKTVVVFRR 338
           G   D    V   
Sbjct: 274 GYATDPLAFVRWH 286


>gi|256964712|ref|ZP_05568883.1| terminase large subunit G2p [Enterococcus faecalis HIP11704]
 gi|256955208|gb|EEU71840.1| terminase large subunit G2p [Enterococcus faecalis HIP11704]
          Length = 430

 Score = 43.8 bits (101), Expect = 0.049,   Method: Composition-based stats.
 Identities = 28/253 (11%), Positives = 71/253 (28%), Gaps = 23/253 (9%)

Query: 94  NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
            A +++  +  R  ++ + I   +  ++ +++ ++   +       +F++    +     
Sbjct: 50  IAHIIV-QLIMRYPVNAVAIRYVDNTIELSIFEQIKWAIEEQGVSKYFKVNKSPMK---- 104

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSIL 212
                   +    +   I  R          +          + +E A    +   K+I 
Sbjct: 105 --------ITYKPRGNYIVFRGAQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTIT 156

Query: 213 GFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDWKRYQIDTRTVEGIDSGF 265
                          +  + N   R   W    +      E+   +    +    I   F
Sbjct: 157 NSLLRGELADGLFYKFFYSYNPPKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAF 216

Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
            E + +    +   A  E  G+     V  F     I+  +  + +   +  +  G D  
Sbjct: 217 IEEVNATRAKNPKRAEWEYDGKAIGSGVVPFDNLRVIKGCI-TDEMAANFDNIRNGLDF- 274

Query: 326 GEGGDKTVVVFRR 338
           G   D    V   
Sbjct: 275 GYATDPLAFVRWH 287


>gi|73963567|ref|XP_537429.2| PREDICTED: similar to CG7922-PA [Canis familiaris]
          Length = 2047

 Score = 43.8 bits (101), Expect = 0.049,   Method: Composition-based stats.
 Identities = 25/250 (10%), Positives = 67/250 (26%), Gaps = 19/250 (7%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
               +    G+GKT + A +M       P   ++ +A ++  +      ++     ++  
Sbjct: 105 CNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQ----QIEACYRVMGI 160

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
                 +      +    E+      +      +         P             +  
Sbjct: 161 PQSHMAEMTGTTQAFTRKEIWRSKRVLFLTPQVMVNDLSRGACP-------AAEIKCLVI 213

Query: 198 DEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256
           DEA     +     ++    +   +   +  S T   +        I      + ++ + 
Sbjct: 214 DEAHKALGNYAYCQVVRELFKYTNHFRILALSATP-GSDIKAIQQVITNLRIGQIELRSE 272

Query: 257 TVEGI---DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
               I           +     +   A  +   Q  +   ++ I  N +   M R+  + 
Sbjct: 273 DSPDILPYSHERRVEKLVVPLGEELAAIQKAYIQVLEAFASSLIQRNIL---MRRDIPNL 329

Query: 314 LYAPLIMGCD 323
               +I+  D
Sbjct: 330 TKYQIILARD 339


>gi|51596194|ref|YP_070385.1| gpP phage P2 terminase [Yersinia pseudotuberculosis IP 32953]
 gi|170024552|ref|YP_001721057.1| hypothetical protein YPK_2327 [Yersinia pseudotuberculosis YPIII]
 gi|51589476|emb|CAH21098.1| similar to gpP phage P2 TERMINASE [Yersinia pseudotuberculosis IP
           32953]
 gi|169751086|gb|ACA68604.1| protein of unknown function DUF264 [Yersinia pseudotuberculosis
           YPIII]
          Length = 587

 Score = 43.4 bits (100), Expect = 0.050,   Method: Composition-based stats.
 Identities = 33/328 (10%), Positives = 70/328 (21%), Gaps = 40/328 (12%)

Query: 60  EAVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           E++  +  +         F+       R +G T   +W  L       G + + ++ S+ 
Sbjct: 142 ESMFDYQRNWYEAGLSPDFRIRNFLKSRQVGATYFFSWEALLDALDT-GRNQMFVSASKA 200

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH-------YTI 171
           Q        +      +      E+  L       +      +      +       +  
Sbjct: 201 QAHQ-FKNYIVAAARQVDVDLRGEVIILPNGAEMHFLGTNASTAQGRPGNLYLDEYFWIP 259

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP---NRFWIMTS 228
             +                     +    S T         G           R  I  S
Sbjct: 260 GFQKLRRAASGMASQKRYRST---YFSTPSSTSHEAYPFWAGTLFNKGKAKDKRIEIDVS 316

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
             R   G   +      + +++       ++G    F    +     D D      +  F
Sbjct: 317 YPRLAGGRLCED-----KQYRQIVTIEDALKGGCDLFDIDELRNENSDQD-FENLFMCGF 370

Query: 289 PQQEVNNFIPHNYIEEAMSREAIDD----------LYAPLIMGCDIAGEGGDKTVVVFRR 338
                + F         +                    P+ +G D A  G D        
Sbjct: 371 IDDNASTFKLAEMQRCMVDSWEKWTDVKLLALRPFGDRPVWIGYDPASTG-DSAGCAVIA 429

Query: 339 GNI-------IEHIFDWSAKLIQETNQE 359
             +       +     W      +    
Sbjct: 430 PPVVAGGKFRVLERHQWKGMDFADQASN 457


>gi|330796515|ref|XP_003286312.1| hypothetical protein DICPUDRAFT_150267 [Dictyostelium purpureum]
 gi|325083739|gb|EGC37184.1| hypothetical protein DICPUDRAFT_150267 [Dictyostelium purpureum]
          Length = 2271

 Score = 43.4 bits (100), Expect = 0.050,   Method: Composition-based stats.
 Identities = 20/179 (11%), Positives = 48/179 (26%), Gaps = 11/179 (6%)

Query: 59   MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
            M A++    + V+ S  +     +    G GKT L   ++  L++  P   I+  A S  
Sbjct: 1370 MNALNDQQRNAVDQSLFSEGITLVHGLTGTGKTHLVLNLISILLAVNPNFKILVCAPSHG 1429

Query: 119  QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT--- 175
             +       +        +   +      +      ++ +     +  +           
Sbjct: 1430 SVDEISRRLMKSKFYSN-NMEQYSPVITRIGSLENISKDIHPICLLGKESKIRANTLKNT 1488

Query: 176  ---YSEERPDTFVGPHNTH-GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
                S           N      +  D+A         S +      +  +  I+  + 
Sbjct: 1489 NICLSTLSASAMDFRRNHFIPSIIIIDDA---TQSCEISTIIPLASSSNVKKLILVGDP 1544


>gi|88860789|ref|ZP_01135426.1| putative ATP-dependent RNA helicase DbpA [Pseudoalteromonas
           tunicata D2]
 gi|88817384|gb|EAR27202.1| putative ATP-dependent RNA helicase DbpA [Pseudoalteromonas
           tunicata D2]
          Length = 460

 Score = 43.4 bits (100), Expect = 0.050,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 49/190 (25%), Gaps = 12/190 (6%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGM-SIICIANSETQLKNTLWAEVSKWLSMLPH- 137
               A  G GKT   A  +L  +  R      + +  +          E+ K    +P+ 
Sbjct: 44  VIAQAKTGSGKTAAFALGLLENLDVRKYRVQALVLCPTRELADQVAQ-EIRKLARGIPNV 102

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
           +       + + P     E            + I       E   +      +H   +  
Sbjct: 103 KVLALCGGVPMGPQIGSLEH---------GAHIIVGTPGRIEDHLSRRTLDLSHVNTLVL 153

Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257
           DEA    D+   + L    +  P     +  +                +  K     +  
Sbjct: 154 DEADRMLDMGFSAALDAIIDQTPRDRQTLFFSATFPEKIQQIASRTMRDPVKVEVESSHN 213

Query: 258 VEGIDSGFHE 267
              I   F++
Sbjct: 214 NVNIRQYFYK 223


>gi|46137087|ref|XP_390235.1| hypothetical protein FG10059.1 [Gibberella zeae PH-1]
          Length = 1608

 Score = 43.4 bits (100), Expect = 0.050,   Method: Composition-based stats.
 Identities = 21/211 (9%), Positives = 58/211 (27%), Gaps = 20/211 (9%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           +P  WQ + ++ +D +                + A    GKT ++ + M  ++       
Sbjct: 682 EPDAWQRDVLDCIDANES------------VLVVAPTSAGKTFISFYAMKKVLEESDDGV 729

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           ++ +A ++  +        +++      R        ++H   +      Q   + +  +
Sbjct: 730 LVYVAPTKALVNQIAAEIEARFSKSY--RQQSGKSIWAVHTRDYRINNPSQCQILVTVPH 787

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM--- 226
            +     S           +     +  DE        +  +      L P     +   
Sbjct: 788 MLQIMLLSPTNAVGTNAW-SRRVKRIIFDEVHCIGQADDGVVWEQLLLLAPCPIIALSAT 846

Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257
             N   L  W     +   + +    +    
Sbjct: 847 VGNPNELKDWLA--MSQAQKGYDMKMVVHED 875


>gi|218688939|ref|YP_002397151.1| putative large subunit terminase [Escherichia coli ED1a]
 gi|218426503|emb|CAR07331.1| putative large subunit terminase [Escherichia coli ED1a]
          Length = 568

 Score = 43.4 bits (100), Expect = 0.050,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 55/241 (22%), Gaps = 31/241 (12%)

Query: 6   STDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVH 65
           S     EQ L  M   +    +    +   +    +   L  F      Q +   ++   
Sbjct: 14  SEMTGTEQRLFIMTKLS----NPWWRLNHLYKIQNEKGELVTFRM-RPAQRQLFRSMHN- 67

Query: 66  CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW 125
                        K  I   R +G +T     +L      P +    +A  +        
Sbjct: 68  -------------KNIILKARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQAASEIFR 114

Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185
            +++     LP         +               +            ++         
Sbjct: 115 TKIAVPFDHLPDWLRASFTIVERRSGASG-----GYILFGHGSSIQVATSFRSGTVQRLH 169

Query: 186 GPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL 245
              +           +  P    +   G    ++        S    + G FY++ N   
Sbjct: 170 ISEHGKI-------CAKYPAKAKELRTGTLNAVSDECIIFDESTAEGVGGDFYEMSNRAQ 222

Query: 246 E 246
           E
Sbjct: 223 E 223


>gi|83643297|ref|YP_431732.1| Mu-like prophage FluMu protein gp28 [Hahella chejuensis KCTC 2396]
 gi|83631340|gb|ABC27307.1| Mu-like prophage FluMu protein gp28 [Hahella chejuensis KCTC 2396]
          Length = 581

 Score = 43.4 bits (100), Expect = 0.050,   Method: Composition-based stats.
 Identities = 38/319 (11%), Positives = 80/319 (25%), Gaps = 68/319 (21%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
               + +        +++     +  + + R IG T   AW       T     I   A 
Sbjct: 137 ETIRKELFYDYQHRWHDNKSQRTRFILKS-RQIGATYYFAWEAFQDAITSGDNQIFLSA- 194

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
           S +Q  +   A + K+                        +++  S G + +  +   RT
Sbjct: 195 SRSQA-DIFKAYILKFAREY------------FDTELKGVDVIPLSNGAELRFVSTNGRT 241

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW--IMTSNTRRL 233
                     G H      ++ DE    PD     +    + +  ++ W     S     
Sbjct: 242 A--------QGYHGH----LYIDEVFWIPD--FDRLNKLASGMAAHKKWRKTYFSTPSVK 287

Query: 234 NGWFYDIFNIPL-------------------------EDWKRYQIDTRTVEGIDSGFHEG 268
           +   Y +++                            +   R  +             + 
Sbjct: 288 SHGAYTLWSGERYNESRRHKVEFDLSRAALREGQLGPDKVWRNVVTVEDAANQGCDLFDI 347

Query: 269 IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS-----------REAIDDLYAP 317
              +            +  F +  + +    + +                R+       P
Sbjct: 348 DELKQEYTEAEFNNLFMCAFMEAGL-SVFKLDDLLSCAVCSSDVWPDFKPRQPRPFANYP 406

Query: 318 LIMGCDIAGEGGDKTVVVF 336
           + +G D A  G   TVVV 
Sbjct: 407 VWLGYDPARTGDRSTVVVV 425


>gi|308182843|ref|YP_003926970.1| hypothetical protein HPPC_03450 [Helicobacter pylori PeCan4]
 gi|308065028|gb|ADO06920.1| hypothetical protein HPPC_03450 [Helicobacter pylori PeCan4]
          Length = 1606

 Score = 43.4 bits (100), Expect = 0.051,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 55/198 (27%), Gaps = 35/198 (17%)

Query: 29  KNFVMRFFPWGIKG-------KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81
           ++F+     W            PL    +P   Q E +E    +  +  N          
Sbjct: 145 EDFIYSRIDWEKFDPTKTEDEIPLCDKKKPRPHQTEAIEKTKEYFSNPKNARGK-----L 199

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN----------------TLW 125
           I A  G GKT  +    L ++ +      + +A S   L                   + 
Sbjct: 200 IMAC-GTGKTYTS----LKIMESLDPKITLFLAPSIALLSQTFREYAQEKSEPFYASIVC 254

Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI--DSKHYTITCRTYSEERPDT 183
           ++     S        +   L L PS    ++L        ++K + I     S  R   
Sbjct: 255 SDDKTAQSKNEDNDDIKFSELPLKPSTRLEDILSVHKKAQKENKRFIIFSTYQSALRIKE 314

Query: 184 FVGPHNTHGMAVFNDEAS 201
                      +  DEA 
Sbjct: 315 AQEAGLGEIDLIICDEAH 332


>gi|121608006|ref|YP_995813.1| type III restriction enzyme, res subunit [Verminephrobacter
           eiseniae EF01-2]
 gi|121552646|gb|ABM56795.1| type III restriction enzyme, res subunit [Verminephrobacter
           eiseniae EF01-2]
          Length = 769

 Score = 43.4 bits (100), Expect = 0.051,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 59/193 (30%), Gaps = 16/193 (8%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG-MSI 110
             +QL+ +        +  N +        + A  G GKT   A+ ++W +        I
Sbjct: 162 RYYQLKAINRTVEAIANGQNRA------LLVMAA-GTGKTC-TAFQIIWRLWKSDSRKRI 213

Query: 111 ICIANS---ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
           + +A+S     Q     +      +  L        ++ +     W      + +    +
Sbjct: 214 LFLADSNTLINQAMVNDFRPFKSAMIKLSFDAKGVERADAPGERKWGDRKTAKEVDKSYE 273

Query: 168 HYTITCR---TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
            Y  +CR      E+  D +          +  DE          S+     +   +   
Sbjct: 274 IYLASCRIVTGTGEKHNDIYKQFRPDFFDLIVVDECHH-GSAAEDSVWREILDYFASATQ 332

Query: 225 IMTSNTRRLNGWF 237
           I  S+T   + +F
Sbjct: 333 IGFSSTAVDSDYF 345


>gi|256619492|ref|ZP_05476338.1| terminase large subunit G2p [Enterococcus faecalis ATCC 4200]
 gi|256599019|gb|EEU18195.1| terminase large subunit G2p [Enterococcus faecalis ATCC 4200]
          Length = 429

 Score = 43.4 bits (100), Expect = 0.051,   Method: Composition-based stats.
 Identities = 28/253 (11%), Positives = 71/253 (28%), Gaps = 23/253 (9%)

Query: 94  NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
            A +++  +  R  ++ + I   +  ++ +++ ++   +       +F++    +     
Sbjct: 49  IAHIIV-QLIMRYPVNAVAIRYVDNTIELSIFEQIKWAIEEQGVSKYFKVNKSPMK---- 103

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSIL 212
                   +    +   I  R          +          + +E A    +   K+I 
Sbjct: 104 --------ITYKPRGNYIVFRGAQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTIT 155

Query: 213 GFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDWKRYQIDTRTVEGIDSGF 265
                          +  + N   R   W    +      E+   +    +    I   F
Sbjct: 156 NSLLRGELADGLFYKFFYSYNPPKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQVF 215

Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
            E + +    +   A  E  G+     V  F     I+  +  + +   +  +  G D  
Sbjct: 216 IEEVNATRAKNPKRAEWEYDGKAIGSGVVPFDNLRVIKGCI-TDEMAANFDNIRNGLDF- 273

Query: 326 GEGGDKTVVVFRR 338
           G   D    V   
Sbjct: 274 GYATDPLAFVRWH 286


>gi|170588285|ref|XP_001898904.1| DEAD/DEAH box helicase family protein [Brugia malayi]
 gi|158593117|gb|EDP31712.1| DEAD/DEAH box helicase family protein [Brugia malayi]
          Length = 726

 Score = 43.4 bits (100), Expect = 0.051,   Method: Composition-based stats.
 Identities = 18/173 (10%), Positives = 49/173 (28%), Gaps = 10/173 (5%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGM-SIICIANSETQLKNTLWAEVSKWLSMLPHR 138
             + A  G GKT + + + +  ++ + G   ++ +A +       +      ++ ML   
Sbjct: 84  LLVQAKSGTGKTMVFSLLAVENLNAQFGRPQVLIVAPTREIASQIV-----SYIRMLAPS 138

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               +  + +   G    + E    +    + +   T              +H      D
Sbjct: 139 ----VIHVGMFVGGNEKGVAEDIQKLRKSIHIVVGTTGRLCHLVRINALRLSHVRLFVLD 194

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY 251
           EA    +   +  + +     P    I   +          + +   +     
Sbjct: 195 EADKLMEDSFQKEINYLFSTLPPEKQIAVFSATYPYRLDTTLMHYMRDVHLVR 247


>gi|120402158|ref|YP_951987.1| hypothetical protein Mvan_1146 [Mycobacterium vanbaalenii PYR-1]
 gi|119954976|gb|ABM11981.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
          Length = 551

 Score = 43.4 bits (100), Expect = 0.051,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 46/172 (26%), Gaps = 6/172 (3%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
            +  + +  H  S + ++   + +  I  G G GKT L       L   R G  +  +  
Sbjct: 199 EDAADILTEH-QSVILDAIRLLNRVEIRGGAGSGKTFLAMEQARRLA--RDGQRVALVCY 255

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
           S   L + L    + W       +  E   L                    + +      
Sbjct: 256 S-HGLASYLERITAAWNRRQQPAYVGEFHDLGKRWGAPAGPDESLRTEQTVQFWEHDLPA 314

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
              E              A+  DEA    D     +L    +      ++ T
Sbjct: 315 QMTELAMQLDD--GQRFDAIVVDEAQDFADAWWDPLLAALKDDETGGLYVFT 364


>gi|295402829|ref|ZP_06812763.1| type III restriction protein res subunit [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294975136|gb|EFG50780.1| type III restriction protein res subunit [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 954

 Score = 43.4 bits (100), Expect = 0.052,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 78/243 (32%), Gaps = 51/243 (20%)

Query: 10  KLEQELHEMLMHAE--CVLSFKNFVMRFFPWGIKGKPLEHFS---------------QPH 52
           +  + + + + ++E   +L    F+  +  +    + LE+F                +P+
Sbjct: 150 EQTKRIFDQIWNSEETVILD-SEFIHYYSEFFEAKRKLENFKAAETKEHYQIKHNGIKPN 208

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
             Q + +  +     +  N       K  I A  G GKT L+A    + +       ++ 
Sbjct: 209 AMQEKALRNLQNTRKNGNN-------KGVIIAATGTGKTYLSA----FDVKAFNPKKLLF 257

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           IA+ E  L N     +  +  ++P +  F   + ++                      + 
Sbjct: 258 IAHREELLDNA----IKTFQQVIPKQEIFGKITGTVKEFDKP---------------YLF 298

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232
               S  + +            +  DE         + ++ +F    P     +T+   R
Sbjct: 299 STVQSLHKDEILQRFKRDEFDYIIVDEFHHAEAPTYRKVIDYF---QPKFLLGLTATPER 355

Query: 233 LNG 235
           ++G
Sbjct: 356 MDG 358


>gi|225155111|ref|ZP_03723606.1| hypothetical protein ObacDRAFT_9308 [Opitutaceae bacterium TAV2]
 gi|224804058|gb|EEG22286.1| hypothetical protein ObacDRAFT_9308 [Opitutaceae bacterium TAV2]
          Length = 310

 Score = 43.4 bits (100), Expect = 0.053,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 47/171 (27%), Gaps = 12/171 (7%)

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL--------SMLPH 137
           R  GK+ L +   L  +   PG+    I+ +       +  E   W             +
Sbjct: 40  RQGGKSYLLSNEALDWMMETPGVLTSIISAAIALGTEIIVKEAQSWRDHLAKLKAVAAAN 99

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
               E  +  +   G+        +     H   TC       P          G  +  
Sbjct: 100 ALKLETNADDIDFDGFCDLFEHSKLEAKLWHDRTTCSRTRVIAP-NPNTAVGWTGH-IIG 157

Query: 198 DEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246
           DE    P    + ++I  F       R  + T+       + Y++   P  
Sbjct: 158 DEFGRWPNCQEVLEAIEPFMESNPQFRLRLATTPPPDDKHYSYEMLLPPEG 208


>gi|66827407|ref|XP_647058.1| hypothetical protein DDB_G0268914 [Dictyostelium discoideum AX4]
 gi|60475110|gb|EAL73046.1| hypothetical protein DDB_G0268914 [Dictyostelium discoideum AX4]
          Length = 4540

 Score = 43.4 bits (100), Expect = 0.053,   Method: Composition-based stats.
 Identities = 26/204 (12%), Positives = 56/204 (27%), Gaps = 21/204 (10%)

Query: 43   KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFK--------CAISAGRGIGKTTLN 94
                + S   RW  E    +  H +  +N S                I    G GKT   
Sbjct: 3531 IEAYNQSGKDRW--EIPTLLKDHYNQTLNESQLAAINESLVHSSITLIQGPPGTGKTHTI 3588

Query: 95   AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS--- 151
              ++  +++  P   I+    S   +       + K L +      +    + +      
Sbjct: 3589 TSLISIILAINPDFKILVCGPSHAAVDEVAKRVIIKGL-LNDRGEKYIPTMVRIGLKDNI 3647

Query: 152  --GWYAELLEQSMGIDSKHYT--ITCRTYSEERPDTFVGPH-NTHGMAVFNDEASGTPDI 206
                  ++   +  +D K      +   +S            +     V  DEA+ + + 
Sbjct: 3648 QDPIVHDICVFNRRLDEKKMILEHSSICFSTLSASGSNLVQSSFKPNVVIVDEATQSCET 3707

Query: 207  INKSILGFFTELNPNRFWIMTSNT 230
                I+         +  I+  + 
Sbjct: 3708 --SCIIPLSLGAKSMKKLILVGDP 3729


>gi|260774258|ref|ZP_05883173.1| CRISPR-associated helicase Cas3 [Vibrio metschnikovii CIP 69.14]
 gi|260611219|gb|EEX36423.1| CRISPR-associated helicase Cas3 [Vibrio metschnikovii CIP 69.14]
          Length = 763

 Score = 43.4 bits (100), Expect = 0.053,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 45/194 (23%), Gaps = 17/194 (8%)

Query: 68  SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET---QLKNTL 124
                  P +F   +    G GKT  +    L          +I +    +   Q     
Sbjct: 247 RLKAKLTPGLFTLTV--PTGGGKTLSSMAFALEHALAHNMRRVIYVIPFTSIIEQNAQVF 304

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE-LLEQSMGIDSKHYTITCRTYS------ 177
                +        H        +       E   +  + +++    +   T        
Sbjct: 305 RDAFGELGEASVLEHHSNFDDRKIKDKEGAEETRDKLKLAMENWDMPVVVTTAVQFFESL 364

Query: 178 -EERPDTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTRR 232
             +RP      HN  G  +  DEA   P      +   I         +      +    
Sbjct: 365 FADRPSRCRKLHNISGSVIILDEAQTLPLKFLRPVMAVIDELARNYGCSIVLCTATQPAL 424

Query: 233 LNGWFYDIFNIPLE 246
               F + F    E
Sbjct: 425 CEPDFTNGFTNVRE 438


>gi|145351012|ref|XP_001419882.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580115|gb|ABO98175.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 440

 Score = 43.4 bits (100), Expect = 0.053,   Method: Composition-based stats.
 Identities = 34/315 (10%), Positives = 71/315 (22%), Gaps = 51/315 (16%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGR--------GIGKTTLNAWMMLWLISTRPG 107
            E +         +   +        I +G         G GKT       L  I ++P 
Sbjct: 38  KELLRVTAQFKTPSPIQAQSWP---IIMSGHDMVGIAATGSGKTLAFGMPALTQIHSQPP 94

Query: 108 MS-----IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
                   + +A +    + T              R          +         +  M
Sbjct: 95  CKPGQPICLVLAPTRELAQQTA-KVFDDAGEASGVRCVCVYGGAPKYEQ-------KAQM 146

Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS---ILGFFTELN 219
                   I                       +  DEA    D+  +     +   T  +
Sbjct: 147 KAGGGAAVIVATPGRLRDFMEEGVIKLDRVTMLVLDEADRMLDLGFEPEIRAIAGATRAD 206

Query: 220 PNRFWIMTSNTRRLNGWFYDIF-----------NIPLEDWKRYQIDTRTVEGIDSGFHEG 268
                   +  + +     +              +         ++    +  D      
Sbjct: 207 RQTVMFSATWPQSVQSLASEFMCNPIKVRIGAEGLKASQSITQIVEVVEPQDKDRHLARV 266

Query: 269 IISRYGLDSDVARIEILGQFPQQEVN--NFIPHNY-------IEEAMSREAIDDLYA--- 316
           +    G   +V R  I G + ++  N    +   +             RE   D +    
Sbjct: 267 MKQYLGKGKEVPRTLIFGLYKKECANLHQRLSREWPAVCIHGDMSQHDREKSVDAFKKGT 326

Query: 317 -PLIMGCDIAGEGGD 330
             +++  D+A  G D
Sbjct: 327 SRILIATDVAARGLD 341


>gi|60680960|ref|YP_211104.1| putative type I restriction enzyme [Bacteroides fragilis NCTC 9343]
 gi|60492394|emb|CAH07163.1| putative type I restriction enzyme [Bacteroides fragilis NCTC 9343]
          Length = 783

 Score = 43.4 bits (100), Expect = 0.053,   Method: Composition-based stats.
 Identities = 42/324 (12%), Positives = 87/324 (26%), Gaps = 44/324 (13%)

Query: 7   TDQKLEQELHEMLMHAECVLSFKNFVMRFFPWG--IKGKPLEHFSQ---PHRWQLEFMEA 61
           T ++ E +L +     E    +      + P    I   P  + +    P  +Q   ++ 
Sbjct: 128 TGKETEIKLEDFPTEEELYNRYLA-SKNYTPDELNIIETPFYYDAHSHEPRYYQRIAVDR 186

Query: 62  VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121
                            +  +    G GKT     ++  L  +     I+ +A+     +
Sbjct: 187 TVEAIAKGQQ-------RVLVVMATGTGKTFTAFQIIHRLHKSGAKKKILYLAD-----R 234

Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
           N L  +          + +   +      +       +     +            E RP
Sbjct: 235 NILIDQTM-------TQDFKPFKKFMTKITSVGEGEEKIDSSYEMYMALYHQLVGKEGRP 287

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
           D F+         +  DE        + +        N      MT+  +   G      
Sbjct: 288 DPFLEVRPNFFDLIIVDECHRGSAKDDSAWRKVLEYFNTATQIGMTATPKADEG------ 341

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301
                      +D            +GI      D  +A   +   F   ++  + P   
Sbjct: 342 --------ANNLDYFGEPVYTYSLLQGI-----NDGFLAPYRVTADFINVDLQGWTPEEG 388

Query: 302 IEEAMSREAIDDLYAPLIMGCDIA 325
             + + +E    LY    +G D+A
Sbjct: 389 EIDLLGKEIEQKLYQRQNIGRDLA 412


>gi|258539063|ref|YP_003173562.1| phage-related terminase large subunit [Lactobacillus rhamnosus Lc
           705]
 gi|257150739|emb|CAR89711.1| Phage-related terminase, large subunit [Lactobacillus rhamnosus Lc
           705]
          Length = 570

 Score = 43.4 bits (100), Expect = 0.053,   Method: Composition-based stats.
 Identities = 39/322 (12%), Positives = 85/322 (26%), Gaps = 60/322 (18%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFK---CAISAGRGIGKTTLNAWMMLWLISTRPG-- 107
            +Q   + ++       V+  +P I +     IS  R  GK+ L + ++L+         
Sbjct: 74  PFQKFIIGSIY----GWVDKDDPNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPA 129

Query: 108 -MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
               +  A ++ +    ++  V   L  L                          +  D 
Sbjct: 130 NKRQLYTAANDRKQAGIVFGMVKDRLRAL--------------MRKDPGIKRMVKITRDE 175

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS--GTPDIINKSILGFFTELNPNRFW 224
                   T      DT              DE +   T D+I     G     +   F 
Sbjct: 176 LVNLDDGSTIRSFSRDTG-LVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFI 234

Query: 225 IMTSNTRRLNGWFYDIFNIPL---------EDWKRYQIDTRTVEGIDSG--FHEGI---- 269
           I T+        F   +             E +  +  +   V+ +D    + +      
Sbjct: 235 ISTAGFDMNVPMFQQNYPYAKKVLSGEETAERYFAFIAEQDNVQEVDDPNSWIKSNPLLD 294

Query: 270 -----------------ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
                             +R     +   ++    + Q   ++++  +  + A   +  D
Sbjct: 295 VDIVHDQITDYLTTKLSQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTDKPD 354

Query: 313 DLYAPLIMGCDIAGEGGDKTVV 334
                  +G D+     D   +
Sbjct: 355 IRGQRAWIGIDVGRT-SDLFAI 375


>gi|19074342|ref|NP_585848.1| PRE-mRNA SPLICING HELICASE [Encephalitozoon cuniculi GB-M1]
 gi|19068984|emb|CAD25452.1| PRE-mRNA SPLICING HELICASE [Encephalitozoon cuniculi GB-M1]
          Length = 1481

 Score = 43.4 bits (100), Expect = 0.053,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 44/170 (25%), Gaps = 20/170 (11%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              + A  G GKT +    +L     R  M +  I   +   +      +S+W S     
Sbjct: 264 NVLVCAPTGSGKTVIGMMSILREAERRKKMRVGYIVPMKALAREIC-RTISRWFSGYGIS 322

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               ++  S   SG+        +    + + +  R                    V  D
Sbjct: 323 V---VEHTSDVYSGYAHLERTGVIVSTPEKFDVLTRNTDL------------WFDLVVID 367

Query: 199 EASGTPDIINKSILGFFT----ELNPNRFWIMTSNTRRLNGWFYDIFNIP 244
           E     D    ++                 +  +    ++   +   N P
Sbjct: 368 EIHMVGDSRGAAVEAVVARMAVRGGCRIVGLSATLPNYMDVGAFIGCNDP 417


>gi|322703686|gb|EFY95291.1| DEAD/DEAH box helicase, putative [Metarhizium anisopliae ARSEF 23]
          Length = 1561

 Score = 43.4 bits (100), Expect = 0.054,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 55/217 (25%), Gaps = 25/217 (11%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P  WQ + ++A+D +                + A    GKT ++ + M  ++ +     I
Sbjct: 498 PDAWQRDVLDAIDANKS------------LFVVAPTSAGKTFVSFYAMKKVLQSNDDDVI 545

Query: 111 ICIANSETQLKNT---LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
           + +A ++  +      + A  SK  S      W          +    ++L         
Sbjct: 546 VYVAPTKALVNQIAAEVQARFSKAYSTPGRSVWAIHTRDYRINNPTGCQILITV----PH 601

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM- 226
              I     S  +              +  DE           I      L P     + 
Sbjct: 602 MLQIMLLAPSNAKTANSWSLRVKR---IIFDEVHCIGQSDEGVIWEQLLLLAPCPIIALP 658

Query: 227 --TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI 261
               N      W          + +      R  +  
Sbjct: 659 ATVGNPMDFGAWLQGSEKAKGHELEMIVHPHRYSDLR 695


>gi|311120260|gb|ADP69217.1| putative terminase large subunit [Leuconostoc phage phiMH1]
          Length = 581

 Score = 43.4 bits (100), Expect = 0.054,   Method: Composition-based stats.
 Identities = 36/308 (11%), Positives = 77/308 (25%), Gaps = 55/308 (17%)

Query: 69  NVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMS----IICIANSETQLKNT 123
               +    ++ AI++  RG GKT L + +  +    +        II  +N+  Q K  
Sbjct: 80  RNKKTGGKRYRKAIASIARGQGKTYLASVLATYDFFVQSYKKNNQDIIVASNTVAQSKK- 138

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
           L+  +   ++ +                         +M   +                 
Sbjct: 139 LYGYIRGTINKM------RQGIFKKRDKDIADTYETITMKSKNNVIVRLS-----ADGGK 187

Query: 184 FVGPHNTHGMAVFNDEAS-GTPDIINKSIL-GFFTELNPNRFWIMTS--NTRRL------ 233
           F   H         DEA           I  G           I T+  N          
Sbjct: 188 FDSYHA---TTAIFDEAGDQKSREAFGKITSGQVKIEEALFLMISTAYQNPNAPLREDIR 244

Query: 234 -------------NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV- 279
                        + +F  +++    D             +     + +    GL S+  
Sbjct: 245 NVSNDIKSGAHELDDFFLAVWSQDSPDEVFKPETWEKSNPLLGLESQHMKLLNGLVSERN 304

Query: 280 ----------ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329
                       ++ +  +   E N       ++ A+ ++        + +G D +    
Sbjct: 305 TLMSQGKINDFLVKNMNIWLNAEENAAFSLEDVQNAVIQDFDMH-NRQVYIGFDNSMTSD 363

Query: 330 DKTVVVFR 337
           D  +    
Sbjct: 364 DAALAFVF 371


>gi|302529524|ref|ZP_07281866.1| ATPase [Streptomyces sp. AA4]
 gi|302438419|gb|EFL10235.1| ATPase [Streptomyces sp. AA4]
          Length = 1232

 Score = 43.4 bits (100), Expect = 0.054,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 38/124 (30%), Gaps = 7/124 (5%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM-LPHR 138
            A+    G GKT L   ++  L+  R G ++   +NS   ++N L A +     M    R
Sbjct: 858 LAVQGPPGAGKTYLAGKLIAHLV--RSGRTVGVTSNSHKAVENVLSAAMENAPEMACAKR 915

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                              L +    ++  + +    ++                 +  D
Sbjct: 916 AKRTPDPSLPWEQPKTNTALVRWREENNTGHLVGGTAWTFANA----AVREEPFDVLVID 971

Query: 199 EASG 202
           EA  
Sbjct: 972 EAGQ 975


>gi|167745751|ref|ZP_02417878.1| hypothetical protein ANACAC_00444 [Anaerostipes caccae DSM 14662]
 gi|167654782|gb|EDR98911.1| hypothetical protein ANACAC_00444 [Anaerostipes caccae DSM 14662]
          Length = 915

 Score = 43.4 bits (100), Expect = 0.054,   Method: Composition-based stats.
 Identities = 31/251 (12%), Positives = 63/251 (25%), Gaps = 22/251 (8%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q   ++  D +             K  I A  G GKTTL        +  R G   +
Sbjct: 15  RPYQERILDRADTYLKDG---------KIHIVAPPGSGKTTLG-----IELIRRLGRPCL 60

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            ++ S    +  L      ++         +        +    + L   M   +   ++
Sbjct: 61  ILSPSAVIRQQWLERVKEAFIQKDDQSLLSDDIHAPALITSVTYQALHFGMEQINGPKSV 120

Query: 172 T-CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
                   +  +            +  DE         KS+  F  ++       +T+  
Sbjct: 121 FEAEQEDSKVFNLINAVKAAEIGTICLDECHHLRSEWWKSLEKFMMKMENVCVVSLTATP 180

Query: 231 RRLN------GWFYDIFNIPLEDWKRYQI-DTRTVEGIDSGFHEGIISRYGLDSDVARIE 283
              +       +      I  E      + D       D  +            D  R E
Sbjct: 181 PYDSTSAQWERYIGLCGEIDEEIIVPELVQDHSLCPHQDYVYFNYPTEDEKAQIDAFRGE 240

Query: 284 ILGQFPQQEVN 294
           +   F +   +
Sbjct: 241 VRKVFQEMTAD 251


>gi|268323389|emb|CBH36977.1| probable ATP-dependent RNA helicase [uncultured archaeon]
          Length = 392

 Score = 43.4 bits (100), Expect = 0.055,   Method: Composition-based stats.
 Identities = 36/353 (10%), Positives = 81/353 (22%), Gaps = 64/353 (18%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           K    E F +P   Q + +  +                     A  G GKT   A  ++ 
Sbjct: 15  KSIEEEGFERPTEIQEKSISLILSGKD------------VIAEAATGSGKTLAFAADIIE 62

Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
                 G+  + +  +    +                  + + + L +        +   
Sbjct: 63  KTEKGTGIRTLVLTPTRELAQQV----------AAALSLFSKYKPLRIVAVFGGVSIN-P 111

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA------SGTPDIINKSILGF 214
            +    +   +                + +    +  DEA         PD+        
Sbjct: 112 QITQLRRADVVVGTPGRILDHIGRRTLNLSKVNILVLDEADRMLDMGFIPDVKKIVGE-- 169

Query: 215 FTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-------DWKRYQIDTRTVEGIDSGFHE 267
               N        + +R +          P+        D  +       V   +  F  
Sbjct: 170 -CPRNRQTLLFSATISREITVLARKYQKDPISVSAEAYVDPSKLTQLYYDVPD-NLKFSL 227

Query: 268 GIISRYGLDSDVARIEI----LGQFPQQEVNNF------IPHNYIEEAMSREAI--DDLY 315
            +      +S++  +         F    +         I     ++   R         
Sbjct: 228 LVHLLKHEESELVMVFCNTRTNTDFVASNLKALGIGAMAIHGGLTQDKRDRVMKQFHSHD 287

Query: 316 APLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDW----SAKLIQETNQEGCPVG 364
             +++  D+A  G D           + HI+++      K            G
Sbjct: 288 VRVLVCTDVAARGLD--------IPHVSHIYNYDIPMYGKDYIHRIGRTARAG 332


>gi|328698487|ref|XP_001948012.2| PREDICTED: hypothetical protein LOC100166297 [Acyrthosiphon pisum]
          Length = 2033

 Score = 43.4 bits (100), Expect = 0.055,   Method: Composition-based stats.
 Identities = 25/213 (11%), Positives = 57/213 (26%), Gaps = 17/213 (7%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              +S   G+GKT + A +M       P   II +A +           V++ +      
Sbjct: 190 NTLVSLPTGMGKTFIAAVVMYNFYRWYPMGKIIFMAPTR--------PLVAQQIEAC--- 238

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH--NTHGMAVF 196
               +  +    +      +       + +         +   +        +     + 
Sbjct: 239 --HSIMGIPREMTFEMTGNIPPEQRYLAWNKYRVFFLTPQVLANDLSLNKCPSDTFRCII 296

Query: 197 NDEASGTPDIINKS-ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255
            DEA           +L   +E N     +  S T            I   +  + +  T
Sbjct: 297 VDEAHRATKDYAYVQVLKRLSEENKVIRIVGLSATP-GTNVEAVTEVIRNLNISKLEFRT 355

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
                +    ++  +    +      ++I  QF
Sbjct: 356 DESPDVAKYTNKKDVECISVKLTNTILDIRTQF 388


>gi|219123462|ref|XP_002182043.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406644|gb|EEC46583.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1565

 Score = 43.4 bits (100), Expect = 0.056,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 61/200 (30%), Gaps = 22/200 (11%)

Query: 45  LEHFSQP--------HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
           LE+   P        H W     E      +              +S   G+GKT + A 
Sbjct: 254 LEYKPGPVPIDESTAHEWVYPTAETFPKRQYQLEITKTALFHNTLVSLPTGLGKTLIAAA 313

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
           ++       P   +I +A +           V++ +              ++  +G    
Sbjct: 314 VLYNYYRWFPTGKVIFLAPTL--------PLVNQQVKACYDIMGIPPSDTAV-LTGKVHA 364

Query: 157 LLEQSMGIDSKHYTITCRTYSEE-RPDTFVGPHNTHGMAVFNDEASGTP-DIINKSILGF 214
              + +  D + +  T +T  ++   +      ++  + V  DEA  +  D     ++  
Sbjct: 365 ARREIVWRDRRVFFCTPQTVQKDLDANRCD---SSKVVCVVLDEAHKSTGDYAYVKVVER 421

Query: 215 FTELNPNRFWIMTSNTRRLN 234
             E   +   +  S T   N
Sbjct: 422 LEEAGAHFRVLGLSATPGTN 441


>gi|285016934|ref|YP_003374645.1| ATP-dependent DNA helicase [Xanthomonas albilineans GPE PC73]
 gi|283472152|emb|CBA14659.1| probable atp-dependent dna helicase protein [Xanthomonas
           albilineans]
          Length = 733

 Score = 43.4 bits (100), Expect = 0.056,   Method: Composition-based stats.
 Identities = 38/270 (14%), Positives = 69/270 (25%), Gaps = 25/270 (9%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           + AG G GKT +    + WL            A + T          +K    + HR   
Sbjct: 27  VLAGAGSGKTRVLTHRIAWLHEVHGVPVHGMFAVTFT----------NKAAGEMRHRADL 76

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
           ++++ S          L   +            ++     D  +         +  DE  
Sbjct: 77  QLRNGSRGMWIGTFHGLAHRLLRLHWQDARLPESFQVLDADDQLRLVKRVVQQLELDE-G 135

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI 261
             P       +    +       I                N     +  YQ        +
Sbjct: 136 KFPPKQIAWWINQQKDEGRRAQHI---QPE----PHDVWINTLRNAYALYQERCDRAGLV 188

Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMG 321
           D             D+         +F +  V+ F   N I+ A  R    D     ++ 
Sbjct: 189 DFAELLLRAHELLRDTPALLAYYRARFAEILVDEFQDTNAIQYAFVRVLAGDSGRVFVV- 247

Query: 322 CDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
                 G D   +   RG  +E++  +   
Sbjct: 248 ------GDDDQAIYGWRGAKVENVQRFLKD 271


>gi|262383481|ref|ZP_06076617.1| helicase domain-containing protein [Bacteroides sp. 2_1_33B]
 gi|262294379|gb|EEY82311.1| helicase domain-containing protein [Bacteroides sp. 2_1_33B]
          Length = 932

 Score = 43.4 bits (100), Expect = 0.056,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 52/186 (27%), Gaps = 12/186 (6%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
              Q    +  +      +        +  I+ G G+GKT      +  +I    G  I+
Sbjct: 96  TVAQGGAFDVAEYQMTPTLKAFELPRPRLLIADGVGLGKTIEVGIFLAEMIRRSRGKRIL 155

Query: 112 CIANSE--TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
             A      Q +  +W   +  L  L      ++Q+        +    +  + ID+   
Sbjct: 156 VCALKSILAQFQEEIWNRFAIPLVRLDSLGVAKIQNEIPLNKNPFDYYDKTIISIDTLKN 215

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
               R + E+           H   +  DE     +  +                I+TS 
Sbjct: 216 NGRFRAWLEKT----------HWDIIVIDECHKVANDSSLRGDLAQFLAQRCDSMILTSA 265

Query: 230 TRRLNG 235
           T     
Sbjct: 266 TPHNGS 271


>gi|10140950|ref|NP_065527.1| DNA packaging protein [Alcelaphine herpesvirus 1]
 gi|81920580|sp|O36378|TRM3_ALHV1 RecName: Full=Tripartite terminase subunit UL15 homolog; AltName:
           Full=DNA-packaging protein 29; AltName: Full=Terminase
           large subunit
 gi|2337991|gb|AAC58075.1| DNA packaging protein [Alcelaphine herpesvirus 1]
          Length = 686

 Score = 43.4 bits (100), Expect = 0.056,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 43/137 (31%), Gaps = 15/137 (10%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
            R  GKT +   ++  L+++   + I  +A+ +          ++   +  P ++     
Sbjct: 221 PRRHGKTWIVVAIISILLASVQDLRIGYVAHQKHVANAVFTEVINTLHTFFPGKYM---- 276

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                      ++ +++  I          T                   +F DEA+   
Sbjct: 277 -----------DVKKENGTIIFGLPNKKPSTLLCATCFNKNSIRGQTFQLLFVDEANFIK 325

Query: 205 DIINKSILGFFTELNPN 221
                +ILGF  + +  
Sbjct: 326 KDALPTILGFMLQKDAK 342


>gi|332637343|ref|ZP_08416206.1| helicase, RecD/TraA family protein [Weissella cibaria KACC 11862]
          Length = 566

 Score = 43.4 bits (100), Expect = 0.057,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 35/122 (28%), Gaps = 7/122 (5%)

Query: 80  CAISAGR-GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
             I  GR G GK+ + A ++   ++ +  ++ + I  +     N     V + +  L   
Sbjct: 113 IQIVTGRAGSGKSYMMARLI--RLAQQQDVNTLLITPTHAAATNA-RGLVERAIGDLLDE 169

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
           H  +     L P          S    +               D            +  D
Sbjct: 170 HEPDYL---LKPVDHVTIATATSFTYRNHDAMTEIARTGHFFEDAEKASRYPTYDLMIVD 226

Query: 199 EA 200
           EA
Sbjct: 227 EA 228


>gi|312880761|ref|ZP_07740561.1| UvrD/REP helicase [Aminomonas paucivorans DSM 12260]
 gi|310784052|gb|EFQ24450.1| UvrD/REP helicase [Aminomonas paucivorans DSM 12260]
          Length = 1200

 Score = 43.4 bits (100), Expect = 0.057,   Method: Composition-based stats.
 Identities = 33/287 (11%), Positives = 77/287 (26%), Gaps = 38/287 (13%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI- 110
             W    +  +       V +         + AG G GKT   +    WL+++ P   + 
Sbjct: 10  EPWMERLLGDLRPEQRQGVISPRSL---VVVQAGAGTGKTHTLSSRFAWLLASDPTCRVE 66

Query: 111 -----ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
                     +  ++++ +   + +WL   P +      + +    G+ + L   ++   
Sbjct: 67  QILTLTFTEKAAREMRDRIRCRLLQWLEAEPEKLGHLRDAAARIDEGYISTLHAFALR-- 124

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNPNRFW 224
                       +  P++     +  G     +E  G  D ++    L    +   +R  
Sbjct: 125 ---VIRESGLVLDLDPES--RIASPCGEGALFEEMEGAFDRLDPAWFLRLLEDPWRDRCQ 179

Query: 225 IMTSNT--RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI 282
            +  +    RL          P    +  +         D    +            A  
Sbjct: 180 DLFGDPAFPRLVNAL-----SPRRLAELVREAAELHGSRDHTPEDLWTRAPFDPVAAADR 234

Query: 283 EILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329
                 P+           I      + +        +G D+  +G 
Sbjct: 235 IAQALEPRLRE--------IRNLWDGDLLPS------LGADLDRDGS 267


>gi|302306720|ref|NP_983089.2| ABR142Wp [Ashbya gossypii ATCC 10895]
 gi|299788653|gb|AAS50913.2| ABR142Wp [Ashbya gossypii ATCC 10895]
          Length = 1958

 Score = 43.4 bits (100), Expect = 0.057,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 47/149 (31%), Gaps = 15/149 (10%)

Query: 54   WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST-RPGMSIIC 112
            +Q ++   +       + N+N  +F   + +  G GKT + A + +W      PG  ++ 
Sbjct: 1130 YQFKYFNPLQTMTFHTLYNTNENVF---VGSPTGSGKT-VVAELAIWHAFRDFPGSKVVY 1185

Query: 113  IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            IA  +  ++  L             +    +    L      +    + +  D+     T
Sbjct: 1186 IAPMKALVRERLHD---------WKKRITPVTGDRLVELTGDSVPDPRDVK-DATIIITT 1235

Query: 173  CRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
               +     +        +   V  DE  
Sbjct: 1236 PEKFDGISRNWQTRKFVQNVSLVIMDEIH 1264


>gi|296133393|ref|YP_003640640.1| metal dependent phosphohydrolase [Thermincola sp. JR]
 gi|296031971|gb|ADG82739.1| metal dependent phosphohydrolase [Thermincola potens JR]
          Length = 735

 Score = 43.4 bits (100), Expect = 0.057,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 49/179 (27%), Gaps = 18/179 (10%)

Query: 68  SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN--TLW 125
                ++P +F   +    G GKT  +    L    T     +I +    + ++    ++
Sbjct: 228 REKAVNSPGLFTLTV--PTGGGKTLSSMAFALKHAVTHGMDRVIYVIPYTSIIEQNAAVF 285

Query: 126 AEV---SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT------- 175
            E+    K L    +  + E          +     +  +  ++    I   T       
Sbjct: 286 REIFGEEKVLEHHSNFDYPENDIRETDSENFTRLAEKLKLAAENWDMPIVATTNVQFFES 345

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDI----INKSILGFFTELNPNRFWIMTSNT 230
               R       HN     V  DEA   P         +++   T  +        +  
Sbjct: 346 LFAARSSRCRKLHNIANSVVIIDEAQMIPTGYLKPCINALVELITNYHTTVVLCTATQP 404


>gi|323451003|gb|EGB06882.1| hypothetical protein AURANDRAFT_65296 [Aureococcus anophagefferens]
          Length = 1504

 Score = 43.4 bits (100), Expect = 0.057,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 39/152 (25%), Gaps = 18/152 (11%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            A+    G GKT L A  +  L+    G  I   A S   + N + A ++          
Sbjct: 830 LAVQGPPGTGKTYLAARAIARLLE--DGKRIALCAPSHATVANGVLAALAVVAPS--DSI 885

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYT-----------ITCRTYSEERPDTFVGPH 188
                          AE  E+ +   +                            +    
Sbjct: 886 KVVKVGGRRRSKAPGAEDPERELAETAGVECRPRLDQTLVDEFLGGGAVLVGGSAWAFAR 945

Query: 189 NT---HGMAVFNDEASGTPDIINKSILGFFTE 217
           +        +F DEA   P     +I G  + 
Sbjct: 946 DEARGRFDYLFVDEAGQVPAANVAAIAGCASN 977


>gi|294486119|gb|ADE87935.1| putative large terminase subunit [Escherichia phage
           vB_EcoM_ECO1230-10]
          Length = 674

 Score = 43.4 bits (100), Expect = 0.058,   Method: Composition-based stats.
 Identities = 28/245 (11%), Positives = 60/245 (24%), Gaps = 29/245 (11%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            +Q E M+ +            P  ++  +  G  +GKT L A  +          S + 
Sbjct: 59  PYQREPMDMLVD----------PDCYRVTLMWGAQVGKTML-ALCVQAYSVAAEPRSQMM 107

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           +  S+  L+   W E        P        + ++        +  Q M      + + 
Sbjct: 108 MQPSQDDLRT--WLETK----FNPLAEECAPVNNAIAKPRGRDGVNNQKMKSYPGGFLMF 161

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF----TELNPNRFWIMTS 228
             +       +           +  DE  G         +G            RF +  S
Sbjct: 162 AWS------GSPKTMRGRSAPLIVCDEVDGYERTSEGHPVGLLWQRSATFGDQRFLLEIS 215

Query: 229 NTR-RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
               +   +    + +  +            + +   +                  I  Q
Sbjct: 216 TPTLKGESYIEKAYEMGDQRHFYVCCPHCD-DHVTLEWENVKWDGQRETDAETLAAIDEQ 274

Query: 288 FPQQE 292
            P+  
Sbjct: 275 KPETA 279


>gi|291385905|ref|XP_002709362.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 [Oryctolagus
           cuniculus]
          Length = 1759

 Score = 43.4 bits (100), Expect = 0.058,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 56/201 (27%), Gaps = 27/201 (13%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P  WQ E ++ VD H  +             I A    GKT  + + M  ++       +
Sbjct: 812 PDTWQRELLDVVDNHESA------------VIVAPTSSGKTYASYYCMEKVLKESNEGVV 859

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + +A ++  +        +++  MLP+          +    +  + L   + I      
Sbjct: 860 VYVAPTKALVNQVAATVQNRYAKMLPNGEAL----CGVFTRDYRHDALNCQVLIT----V 911

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEAS----GTPDIINKSILGFFTELNPNRFWIM 226
             C       P             V  DE           I + +L              
Sbjct: 912 PACFEILLLAPHRQQWV--KKIRYVIFDEVHCLGGEIGAEIWEHLLVMIRCP-FLALSAT 968

Query: 227 TSNTRRLNGWFYDIFNIPLED 247
            SN   L  W   +     ++
Sbjct: 969 ISNPEHLTAWLQSVKQYWRQE 989


>gi|322832199|ref|YP_004212226.1| terminase, ATPase subunit [Rahnella sp. Y9602]
 gi|321167400|gb|ADW73099.1| terminase, ATPase subunit [Rahnella sp. Y9602]
          Length = 588

 Score = 43.4 bits (100), Expect = 0.058,   Method: Composition-based stats.
 Identities = 32/314 (10%), Positives = 67/314 (21%), Gaps = 65/314 (20%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           I   R IG T   A   L       G + I ++ S+TQ    ++ E     + L      
Sbjct: 163 ILKSRQIGATFFFAREALLRALAT-GHNQIFLSASKTQAY--VFREYIIQFARL---AGV 216

Query: 142 EMQSLSLHP-----SGWYAELLEQSMGIDSKH-------YTITCRTYSEERPDTFVGPHN 189
           E+    +          +      +    +         +    +   +         H 
Sbjct: 217 ELTGDPIVLGNNGAKLIFLGTNSNTAQSHNGDLYVDEIFWIPNFQKLRKVASGMASQEHL 276

Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
                 +    S           G               N            ++      
Sbjct: 277 RTT---YFSTPSALTHGAYPFWSGELFNKGRE-------NPNDRIELDIGHHSLAKGR-- 324

Query: 250 RYQIDTRTVEGIDSGFHEGIIS-----------RYGLDSDVARIEILGQFPQQEVNNFIP 298
                    +       E  ++           +    ++  R   + +F   +  +  P
Sbjct: 325 ----LCEDGQWRQIVTIEDALAGGCNLFNIDTLKQENSAEDFRNLFMCEFVD-DQTSVFP 379

Query: 299 HNYIEEAMSREAIDDL-----------YAPLIMGCDIAGEGGDKTVVVF-----RRGN-- 340
              ++  M   A +             Y  + +G D +  G D             G   
Sbjct: 380 FAELQRCMVESAEEWQDFSPFAVRPFGYRAVWIGYDPSHTG-DSAGCAVVAPPLVDGGKF 438

Query: 341 IIEHIFDWSAKLIQ 354
            +     W      
Sbjct: 439 RVLERHQWKGMDFA 452


>gi|307315429|ref|ZP_07594994.1| protein of unknown function DUF264 [Sinorhizobium meliloti BL225C]
 gi|306898808|gb|EFN29464.1| protein of unknown function DUF264 [Sinorhizobium meliloti BL225C]
          Length = 477

 Score = 43.4 bits (100), Expect = 0.059,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 61/262 (23%), Gaps = 29/262 (11%)

Query: 83  SAGRGIGKTTLNAWMML---------WLISTRPGMSIICIA--NSETQLKNTLWAEVSKW 131
            AG  +GKT   A             W    R    I+ +A   S    ++ +   +   
Sbjct: 63  MAGNQLGKTLAGAAEAAMHLTGRYPDWWQGRRFDRPIVMLAGSESYELTRDGVQRLL--- 119

Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
           +    +   +    L              S  +DS          S      +       
Sbjct: 120 IGPPLNEEEWGTGFLPKAAIKATTRRAGASGALDSVTVRHVSGRASTLLFKAYEQGRAKW 179

Query: 192 ----GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLE 246
                  V+ DE    P+ +     G            +T    R        +      
Sbjct: 180 QANTVDYVWFDEEP--PEDVY--FEGITRTNATRGAIAVTFTPLRGLSAVVARYLMEKSP 235

Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306
           D     +     E       + +I  Y      AR       P        P    EE++
Sbjct: 236 DRAVITMTIEDAEHYTPQERQRVIDSYPAHEREARTRG---VPALGSGRIFP--VTEESI 290

Query: 307 SREA-IDDLYAPLIMGCDIAGE 327
             +      +   I G D   +
Sbjct: 291 RIDPFEIPKHWVQIGGLDFGWD 312


>gi|194744070|ref|XP_001954518.1| GF18303 [Drosophila ananassae]
 gi|190627555|gb|EDV43079.1| GF18303 [Drosophila ananassae]
          Length = 2184

 Score = 43.4 bits (100), Expect = 0.059,   Method: Composition-based stats.
 Identities = 19/175 (10%), Positives = 42/175 (24%), Gaps = 20/175 (11%)

Query: 45   LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            +  F+  +  Q +    +    +              + A  G GKT +    +   ++ 
Sbjct: 1332 MYKFTHFNPIQTQIFHCLYHTDN-----------NVLLGAPTGSGKTIVAEIAIFRALNQ 1380

Query: 105  RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
             P   ++ IA  +  +K  +     ++          E+            E        
Sbjct: 1381 NPKSKVVYIAPLKALVKERISDWEQRFQRSSLGLKVVELTGDVTPDIQAIRESQLIVTTP 1440

Query: 165  DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
            +            E            H   +  DE     +     I    +  N
Sbjct: 1441 EKWDGISRSWQTREYV---------QHVSLIVIDEIHLLGEDRGPVIEVIVSRTN 1486


>gi|166364041|ref|YP_001656314.1| putative helicase [Microcystis aeruginosa NIES-843]
 gi|166086414|dbj|BAG01122.1| putative helicase [Microcystis aeruginosa NIES-843]
          Length = 975

 Score = 43.4 bits (100), Expect = 0.059,   Method: Composition-based stats.
 Identities = 24/201 (11%), Positives = 48/201 (23%), Gaps = 14/201 (6%)

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
                +   +        + A  G GKT L     ++    R G  +         LK  
Sbjct: 21  DDFQHSAIAALAAGKSVVVCAPTGSGKT-LIGEYAIYRALER-GKRVFYTTP----LKAL 74

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE---ER 180
              +   +            +   L  +       +  +   +    +T   +     + 
Sbjct: 75  SNQKFRDFQEKFGRTPTDGDEDSPLLFAEVGLITGDVVINPSALIVVMTTEIFRNMLYKT 134

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDI-----INKSILGFFTELNPNRFWIMTSNTRRLNG 235
           P   VG    +   +  DE     D        +SI+     +          N   L  
Sbjct: 135 PIGQVGTSLENVETLVLDECHYISDRGRGTVWEESIIYCPPSIQLVALSATIGNPGELTD 194

Query: 236 WFYDIFNIPLEDWKRYQIDTR 256
           W   +  +P     +      
Sbjct: 195 WINWVRQLPQPGDNQQTSSCE 215


>gi|15644543|ref|NP_229596.1| hypothetical protein TM1799 [Thermotoga maritima MSB8]
 gi|4982379|gb|AAD36862.1|AE001817_9 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 730

 Score = 43.4 bits (100), Expect = 0.059,   Method: Composition-based stats.
 Identities = 23/186 (12%), Positives = 51/186 (27%), Gaps = 8/186 (4%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
            + Q++ +          + +  P   K  +I+A  GIGKT   A ++           +
Sbjct: 229 RKNQIDSLRW---KFQEEILSFKPERGKIYSITAPTGIGKT--IANLLFASHLADEDTIV 283

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHW-FEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I        ++ T+      + +  P     F   +   +      E L  ++       
Sbjct: 284 IYALPFINIIEQTVDKIKEIFETESPFFVLPFHHLANPAYEEPDKYEDLLMNLWHSRVVV 343

Query: 170 TITCRTYSEERPDTFVGP-HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
           T              +   +      +  DE    P      +      L+     ++ S
Sbjct: 344 TTFVSLLESLITFRKIPFFYKFPKAVLILDEVQAIPHEYWTPVEKTVEFLSKMGTTVLLS 403

Query: 229 NTRRLN 234
              +  
Sbjct: 404 TATKPA 409


>gi|15965769|ref|NP_386122.1| DNA packaging protein GP2 [Sinorhizobium meliloti 1021]
 gi|15075038|emb|CAC46595.1| DNA packaging protein GP2 [Sinorhizobium meliloti 1021]
          Length = 477

 Score = 43.4 bits (100), Expect = 0.059,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 61/262 (23%), Gaps = 29/262 (11%)

Query: 83  SAGRGIGKTTLNAWMML---------WLISTRPGMSIICIA--NSETQLKNTLWAEVSKW 131
            AG  +GKT   A             W    R    I+ +A   S    ++ +   +   
Sbjct: 63  MAGNQLGKTLAGAAEAAMHLTGRYPDWWQGRRFDRPIVMLAGSESYELTRDGVQRLL--- 119

Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
           +    +   +    L              S  +DS          S      +       
Sbjct: 120 IGPPLNEEEWGTGFLPKAAIKATTRRAGASGALDSVTVRHVSGRASTLLFKAYEQGRAKW 179

Query: 192 ----GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLE 246
                  V+ DE    P+ +     G            +T    R        +      
Sbjct: 180 QANTVDYVWFDEEP--PEDVY--FEGITRTNATRGAIAVTFTPLRGLSAVVARYLMEKSP 235

Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306
           D     +     E       + +I  Y      AR       P        P    EE++
Sbjct: 236 DRAVITMTIEDAEHYTPQERQRVIDSYPAHEREARTRG---VPALGSGRIFP--VTEESI 290

Query: 307 SREA-IDDLYAPLIMGCDIAGE 327
             +      +   I G D   +
Sbjct: 291 RIDPFEIPKHWVQIGGLDFGWD 312


>gi|159027769|emb|CAO89639.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 966

 Score = 43.4 bits (100), Expect = 0.060,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 55/242 (22%), Gaps = 28/242 (11%)

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
                +   +        + A  G GKT L     ++    R G  +         LK  
Sbjct: 12  DDFQHSAIAALAAGKSVVVCAPTGSGKT-LIGEYAIYRALER-GKRVFYTTP----LKAL 65

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE---ER 180
              +   +            +   L  +       +  +   +    +T   +     + 
Sbjct: 66  SNQKFRDFQEKFGRTPTDGDEDSPLLFAEVGLITGDVVINPSALIVVMTTEIFRNMLYQT 125

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDI-----INKSILGFFTELNPNRFWIMTSNTRRLNG 235
           P   VG    +   +  DE     D        +SI+     +          N   L  
Sbjct: 126 PIGEVGTSLENVETLVLDECHYISDRGRGTVWEESIIYCPPSIQLVALSATIGNPGELTD 185

Query: 236 W--FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293
           W  +      P ++ +    +    +                          G FP  + 
Sbjct: 186 WINWVRQLRQPSDNKQTSSCELINSDFRPVPL------------RFYFANKEGLFPLLDP 233

Query: 294 NN 295
             
Sbjct: 234 KQ 235


>gi|330813838|ref|YP_004358077.1| cold-shock DEAD-box protein A [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486933|gb|AEA81338.1| cold-shock DEAD-box protein A [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 558

 Score = 43.4 bits (100), Expect = 0.060,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 46/165 (27%), Gaps = 21/165 (12%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
             F  P   Q++ +  +                    SA  G GKT      M+ +I+T+
Sbjct: 20  MKFDTPTPIQIKSIPIILEQKD------------ILASAQTGTGKTAAFCIPMIEMIATK 67

Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
                I +  +          E++K ++ +  +  F+   +          + +Q   + 
Sbjct: 68  KINRAIILVPT---------RELAKQVNDVIEKLLFQQSVIKSVCLVGGEPMNKQLRRLK 118

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS 210
           +K   +                       +  DE     D+    
Sbjct: 119 TKPQIVVGTPGRVNDHLKRKSLLLNKVDLLILDEMDRMLDMGFSI 163


>gi|315123049|ref|YP_004065055.1| helicase [Pseudoalteromonas sp. SM9913]
 gi|315016809|gb|ADT70146.1| helicase [Pseudoalteromonas sp. SM9913]
          Length = 1050

 Score = 43.4 bits (100), Expect = 0.060,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 74/237 (31%), Gaps = 30/237 (12%)

Query: 1   MPRLISTDQ--KLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEF 58
           + +  ST +      +       AEC     N +      G           P   QL  
Sbjct: 268 IAKTKSTFETYWQSPDFELFTGKAECKEKLINSLNEQRGIGQASSQFYFDITPKTHQLAI 327

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           +E +       V  S    FK  + A  G GKT ++A+    +    P    + +A+ E 
Sbjct: 328 LEKLS------VERSVHNRFKNLVVAATGTGKTIISAFDFKTVYDKNPNAHFLFVAHREE 381

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
            LK       S +  +L +  + E+   +  P  +              +          
Sbjct: 382 ILKQA----QSAYRGVLKNNDFGELWVGNYKPQHY--------------NQLFASIQTLN 423

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
            + ++    H  +   +  DE         ++IL  FT   P     +T+   R +G
Sbjct: 424 SQIESLNLTH-DYYDYIVIDEVHHVSAASYRAILNHFT---PTILIGLTATPERQDG 476


>gi|218676343|ref|YP_002395162.1| Superfamily II DNA and RNA helicase [Vibrio splendidus LGP32]
 gi|218324611|emb|CAV26155.1| Superfamily II DNA and RNA helicase [Vibrio splendidus LGP32]
          Length = 428

 Score = 43.4 bits (100), Expect = 0.060,   Method: Composition-based stats.
 Identities = 23/272 (8%), Positives = 70/272 (25%), Gaps = 38/272 (13%)

Query: 87  GIGKTTLNAWMMLWLIST------RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           G GKT   +  ++  +        R     + +A +                     + +
Sbjct: 48  GTGKTAAFSLPVIQHLLNSGKKASRGTARGLILAPTRELAAQIAQNI----------KDY 97

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
            +   LS+       ++  Q   ++     +       E           +   +  DEA
Sbjct: 98  VKYTELSVSAVYGGNKMSSQVRQLELGVDILVATPGRLEEHLEAGNVSIANLEFLVFDEA 157

Query: 201 SGT-PDIINKSILGFFTE-LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
                     ++     +     +  + ++ T               +     + ++   
Sbjct: 158 DRILDMGFINAVRKIMLDVETSPQIMMFSATTSTQLNQLSVDILRKPKRISVERENSTAA 217

Query: 259 EG------IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI------------PHN 300
                   +D      ++S      +  ++ +   + +   +                 +
Sbjct: 218 TVGHVVYPVDQERKTELLSELIGRKNWRQVLVFVNYKETANDVVKELKLDGIKAVLCHGD 277

Query: 301 YIEEAMSR--EAIDDLYAPLIMGCDIAGEGGD 330
             + A  R  +   +  A +++  D+A  G D
Sbjct: 278 KAQSARRRALDDFKEGRARVMVATDVAARGLD 309


>gi|159122282|gb|EDP47404.1| DEAD/DEAH box helicase, putative [Aspergillus fumigatus A1163]
          Length = 2043

 Score = 43.4 bits (100), Expect = 0.061,   Method: Composition-based stats.
 Identities = 14/123 (11%), Positives = 33/123 (26%), Gaps = 10/123 (8%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               + +  G GKT      M W    +PG  ++ IA  +  ++  +     +  + +  +
Sbjct: 1200 NVLLGSPTGSGKTVACELAMWWAFREKPGSKVVYIAPMKALVRERVMDWGKRLAAPMGLK 1259

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               E+   +   +    +        +            +                V  D
Sbjct: 1260 -LVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRDYV---------RKVSLVIID 1309

Query: 199  EAS 201
            E  
Sbjct: 1310 EIH 1312


>gi|37524175|ref|NP_927519.1| hypothetical protein plu0153 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36783598|emb|CAE12448.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 619

 Score = 43.4 bits (100), Expect = 0.061,   Method: Composition-based stats.
 Identities = 22/177 (12%), Positives = 47/177 (26%), Gaps = 9/177 (5%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            ++ +       + P   +  +    G GK+ L +              ++ I       
Sbjct: 21  QIEAYIKIREYFNQPDNKEALVVLPTGTGKSGLISIA----PYGVSNKRVLIITPGLVT- 75

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           K+++                    S  +     Y + +       S          S +R
Sbjct: 76  KDSIRKTQEVLEDNFWVNCDVIFNSKDIPVVNEYLQDISDEHLFASHIVYSNIHRVSSKR 135

Query: 181 PDTF-VGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
             +            +  DEA   P    + +LG+F E    +   +T    R +  
Sbjct: 136 ETSLISRVPQDFFDFIIIDEAHHAPAQSWREVLGYFREA---KILHVTGTPYRGDNQ 189


>gi|70981929|ref|XP_746493.1| DEAD/DEAH box helicase [Aspergillus fumigatus Af293]
 gi|66844116|gb|EAL84455.1| DEAD/DEAH box helicase, putative [Aspergillus fumigatus Af293]
          Length = 2043

 Score = 43.4 bits (100), Expect = 0.061,   Method: Composition-based stats.
 Identities = 14/123 (11%), Positives = 33/123 (26%), Gaps = 10/123 (8%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               + +  G GKT      M W    +PG  ++ IA  +  ++  +     +  + +  +
Sbjct: 1200 NVLLGSPTGSGKTVACELAMWWAFREKPGSKVVYIAPMKALVRERVMDWGKRLAAPMGLK 1259

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               E+   +   +    +        +            +                V  D
Sbjct: 1260 -LVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRDYV---------RKVSLVIID 1309

Query: 199  EAS 201
            E  
Sbjct: 1310 EIH 1312


>gi|331085291|ref|ZP_08334377.1| hypothetical protein HMPREF0987_00680 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408074|gb|EGG87564.1| hypothetical protein HMPREF0987_00680 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 1105

 Score = 43.4 bits (100), Expect = 0.061,   Method: Composition-based stats.
 Identities = 26/200 (13%), Positives = 56/200 (28%), Gaps = 23/200 (11%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            +Q E ++ ++        +     ++  +    G GKT +    +   +  R G  ++ 
Sbjct: 27  PYQEEAIKNLEK------LDKVYDTYRTLVVVPTGGGKTRIAVEYLNRNVLNRQGTKVLW 80

Query: 113 IANSETQL------------KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
           I    + L            +++L      + +     H F  Q  S        ++   
Sbjct: 81  ICERLSLLTQAHHSFVDHTYRDSLEHGGKPFKASEITAHVFSSQDTSFREEYKSEDVQMV 140

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGP----HNTHGMAVFNDEA-SGTPDIINKSILGFF 215
            +   +          S ++ +          NT  + V  DEA     D     I    
Sbjct: 141 FVTKQTLCKMFGFADNSGKQKEIDESFKDWLENTDELTVIIDEAHHAVGDDYRSIIHALL 200

Query: 216 TELNPNRFWIMTSNTRRLNG 235
                    I  + T +   
Sbjct: 201 YMAQAKIHIIGLTATPKNTN 220


>gi|294634584|ref|ZP_06713119.1| terminase, ATPase subunit [Edwardsiella tarda ATCC 23685]
 gi|291092098|gb|EFE24659.1| terminase, ATPase subunit [Edwardsiella tarda ATCC 23685]
          Length = 588

 Score = 43.4 bits (100), Expect = 0.061,   Method: Composition-based stats.
 Identities = 39/366 (10%), Positives = 84/366 (22%), Gaps = 88/366 (24%)

Query: 34  RFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93
            F    I+      F Q   +QL++  A   H   +            I   R IG T  
Sbjct: 128 FFSDEAIEKLEEVFFDQSFEYQLQWYRAGLAHRIRD------------ILKSRQIGATFY 175

Query: 94  NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
            +   L       G + I ++ S+TQ    ++ E     + L                  
Sbjct: 176 FSREALLRALKT-GHNQIFLSASKTQAY--VFREYIIQFARLVDVDL------------- 219

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSI 211
                   +G +           +  +              ++ DE    P    + K  
Sbjct: 220 --TGDPIVIGNNGAKLIFLGTNSNTAQSHNGD---------LYVDEIFWIPNFQKLRKVA 268

Query: 212 LGFFTELNPNRFWIMTSN-------TRRLNGWFYDIFNIPLEDWKRYQID--------TR 256
            G  ++ +    +  T +              F        +  +               
Sbjct: 269 SGMASQKHLRSTYFSTPSTLAHGAYPFWSGDLFNKGRASAADRIEIDISHSALAGGLLCA 328

Query: 257 TVEGIDSGFHEGIIS-----------RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA 305
             +       E  ++           +    +D  +   + +F   +  +  P   ++  
Sbjct: 329 DGQWRQIVTIEDALAGGCTLFDLDQLKRENSADDFKNLFMCEFVD-DKASVFPFEELQRC 387

Query: 306 M------SREAIDDLYAP----LIMGCDIAGEGGDKTVVVFRRGN--------IIEHIFD 347
           M        +       P    + +G D +  G   +                 +     
Sbjct: 388 MVDALEAWTDVNPYADHPFDRPVWIGYDPSHTGD--SAGCVVLAPPAVPGGKFRMLERHQ 445

Query: 348 WSAKLI 353
           W     
Sbjct: 446 WKGMDF 451


>gi|198451661|ref|XP_002137335.1| GA27149 [Drosophila pseudoobscura pseudoobscura]
 gi|198131589|gb|EDY67893.1| GA27149 [Drosophila pseudoobscura pseudoobscura]
          Length = 1366

 Score = 43.4 bits (100), Expect = 0.062,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 42/157 (26%), Gaps = 8/157 (5%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              +    G+GKT + A +M       P   II +A +   +      +++    ++P  
Sbjct: 76  NTLVVLPTGLGKTFIAAVVMYNFYRWYPQGKIIFMAPTRPLVAQ----QIAACQKIMPFP 131

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               +Q          A+L        +    +          D            +  D
Sbjct: 132 GSDTVQLTGQLARPKRAQLWASKRVFFATPQVVHS---DMLETDDGAYFPFGAIKLLVVD 188

Query: 199 EAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
           EA           +       NPN   +  S T    
Sbjct: 189 EAHRAKGRYAFTQVADSMMAQNPNFRMLALSATPGRT 225


>gi|163800373|ref|ZP_02194274.1| hypothetical protein 1103602000595_AND4_06819 [Vibrio sp. AND4]
 gi|159175816|gb|EDP60610.1| hypothetical protein AND4_06819 [Vibrio sp. AND4]
          Length = 430

 Score = 43.4 bits (100), Expect = 0.062,   Method: Composition-based stats.
 Identities = 31/303 (10%), Positives = 79/303 (26%), Gaps = 38/303 (12%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST------RPGMS 109
            E                    F    +A  G GKT   +  M+  +        R    
Sbjct: 17  AECGYEKLTPIQQKAIPMARKGFDIFATAQTGTGKTAAFSLPMIQQLLESSRSVSRKTAR 76

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
            + +A +          E+++ ++    + + +   LS+       ++  Q   ++S   
Sbjct: 77  ALVMAPT---------RELAEQIADNI-KAYTKYTDLSVAAIFGGRKMSSQISALESGVD 126

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--KSILGFFTELNPNRFWIMT 227
            +       E           +   +  DEA    D+                 +  + +
Sbjct: 127 ILVATPGRLEEHIEQGNVSVANIDFLVFDEADRILDMGFIHAVRKIMLDVDTNPQIMMFS 186

Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG------IDSGFHEGIISRYGLDSDVAR 281
           + T               +  +  + +T           +D      ++S      +  +
Sbjct: 187 ATTSSQLNLLAKDILHKPKRIEVERANTTAQTIAHVLYPVDQERKTELLSELIGRKNWRQ 246

Query: 282 IEILGQFPQQEVNNFIPHNY------------IEEAMSREAID--DLYAPLIMGCDIAGE 327
           + +   + +   +                    + A  R   +     A +++  D+A  
Sbjct: 247 VLVFVNYKETANDVVKELKLDGIKAVVCHGDRAQSARRRALEEFKTGKARVMVATDVAAR 306

Query: 328 GGD 330
           G D
Sbjct: 307 GLD 309


>gi|148977043|ref|ZP_01813689.1| DNA and RNA helicase [Vibrionales bacterium SWAT-3]
 gi|145963703|gb|EDK28964.1| DNA and RNA helicase [Vibrionales bacterium SWAT-3]
          Length = 428

 Score = 43.4 bits (100), Expect = 0.062,   Method: Composition-based stats.
 Identities = 25/272 (9%), Positives = 71/272 (26%), Gaps = 38/272 (13%)

Query: 87  GIGKTTLNAWMMLWLIST------RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           G GKT   +  ++  +        R     + +A +                     + +
Sbjct: 48  GTGKTAAFSLPVIQHLLNSGKKASRGTARGLILAPTRELAAQIAQNI----------KDY 97

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
            +   LS+       ++  Q   ++     +       E           +   +  DEA
Sbjct: 98  VKYTELSVSAVYGGNKMSSQVRQLELGVDILVATPGRLEEHLEAGNVSIANLEFLVFDEA 157

Query: 201 SGT-PDIINKSILGFFTE-LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
                     ++     +     +  + ++ T               +     + ++   
Sbjct: 158 DRILDMGFINAVRKIMLDVETSPQIMMFSATTSTQLNQLSVDILRKPKRISVERENSTAA 217

Query: 259 EGIDSGFHEGIISRYGLDSDV-----ARIEILGQFPQQEVNNFI-------------PHN 300
                 +      +  L S++      R  ++    ++  N  +               +
Sbjct: 218 TVGHVVYPVDQERKTELLSELIGRKNWRQVLVFVNYKETANEVVKELKLDGIKAVLCHGD 277

Query: 301 YIEEAMSR--EAIDDLYAPLIMGCDIAGEGGD 330
             + A  R  +   +  A +++  D+A  G D
Sbjct: 278 KAQSARRRALDDFKEGKARVMVATDVAARGLD 309


>gi|332026566|gb|EGI66684.1| Putative ATP-dependent RNA helicase DDX20 [Acromyrmex echinatior]
          Length = 1250

 Score = 43.4 bits (100), Expect = 0.062,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 54/195 (27%), Gaps = 23/195 (11%)

Query: 42  GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101
           G     F +P   QL+ +                  F   + A  G GKT +   + L +
Sbjct: 10  GLMSAGFQKPSPIQLKAI------------PLGRYGFDLIVRAKSGTGKTIVFGVIALDI 57

Query: 102 ISTRPGM-SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
           +    G   ++ IA +        +  V K +         E     +         +E+
Sbjct: 58  LDILVGSPQVLIIAPTREIAIQITY--VIKTIGSKIEGLRVEYFVGGI--------SIEE 107

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220
                SK +         +          +       DEA    +I  +  + +     P
Sbjct: 108 DKKKLSKCHIAVGAPGRVKHLIEKGFLQVSKIKLFVLDEADKLMEINFQKDINYIFSKLP 167

Query: 221 NRFWIMTSNTRRLNG 235
           +   I+ S+      
Sbjct: 168 SSKQIIASSATYPGD 182


>gi|163736715|ref|ZP_02144134.1| phage terminase GpA [Phaeobacter gallaeciensis BS107]
 gi|161390585|gb|EDQ14935.1| phage terminase GpA [Phaeobacter gallaeciensis BS107]
          Length = 649

 Score = 43.4 bits (100), Expect = 0.062,   Method: Composition-based stats.
 Identities = 24/208 (11%), Positives = 51/208 (24%), Gaps = 28/208 (13%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            +Q E ++             NP   + ++  G  +GKT        + I   P   ++ 
Sbjct: 58  PYQREVIDMTA----------NPRCNRISLMWGAQVGKTQTALAAQAFRIGFNPVSQMMM 107

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
                +Q   T W E      +  +    E+ +           +  Q M      + + 
Sbjct: 108 ---QPSQGDLTTWLETKFNPLIEGNEDLAEVIAKPR----ARHGVNNQRMKSYPGGFLMF 160

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD----IINKSILGFFTELNPNRFWIMTS 228
             +       +           +  DE  G            +          R  +  S
Sbjct: 161 SWS------GSPKTMRGRSAPFIICDETDGYDRTSEGHPVSLLWQRAATFGDQRLLLEIS 214

Query: 229 NTR-RLNGWFYDIFNIPLEDWKRYQIDT 255
               +   W    F    + +   +   
Sbjct: 215 TPTIKGGSWIEKAFEQGDQRYFYVRCPH 242


>gi|323176703|gb|EFZ62293.1| large subunit terminase [Escherichia coli 1180]
 gi|326339725|gb|EGD63536.1| Phage protein [Escherichia coli O157:H7 str. 1125]
 gi|326345520|gb|EGD69260.1| Phage protein [Escherichia coli O157:H7 str. 1044]
          Length = 504

 Score = 43.4 bits (100), Expect = 0.063,   Method: Composition-based stats.
 Identities = 20/211 (9%), Positives = 45/211 (21%), Gaps = 23/211 (10%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
            I   R +G +T     +L      P +    +A  +         +++     LP    
Sbjct: 6   IILKARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQAASEIFRTKIAVPFDHLPDWLR 65

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
                +               +            ++            +           
Sbjct: 66  ASFTIVERRSGASG-----GYILFGHGSSIQVATSFRSGTVQRLHISEHGKI-------C 113

Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-----------DWK 249
           +  P    +   G    ++        S    + G FY++ N   E           D+K
Sbjct: 114 AKYPAKAKELRTGTLNAVSDECIIFDESTAEGVGGDFYEMSNRAQEITASGLLLTAQDYK 173

Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280
            +           +   E  +          
Sbjct: 174 FHFYAWWQDPKYSARVPESGLKLSREKMTYF 204


>gi|197935894|ref|YP_002213730.1| TerL large terminase subunit-like protein [Ralstonia phage RSB1]
 gi|197927057|dbj|BAG70399.1| TerL large terminase subunit-like protein [Ralstonia phage RSB1]
          Length = 605

 Score = 43.4 bits (100), Expect = 0.063,   Method: Composition-based stats.
 Identities = 18/142 (12%), Positives = 39/142 (27%), Gaps = 15/142 (10%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
           E    +        +          I A RG  KTT+ A   +W +   P   ++ ++  
Sbjct: 44  EIQVDIAEFLEYGPHY-------LMIQAQRGQAKTTITAAYAVWSLIHNPRNRVVIVSAG 96

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
            TQ        + + +  +           +   S   +  +  S+    K  ++ C   
Sbjct: 97  GTQANEIS-TLIVRIIMTMDELACLRPDRNAGDRSSVESFDVHHSLKGLDKSPSVACFGI 155

Query: 177 SEERPDTFVGPHNTHGMAVFND 198
           +                 +  D
Sbjct: 156 TA-------NMQGKRADLLIAD 170


>gi|53804812|ref|YP_113512.1| DNA-dependent helicase II [Methylococcus capsulatus str. Bath]
 gi|53758573|gb|AAU92864.1| DNA helicase II [Methylococcus capsulatus str. Bath]
          Length = 726

 Score = 43.4 bits (100), Expect = 0.063,   Method: Composition-based stats.
 Identities = 33/298 (11%), Positives = 76/298 (25%), Gaps = 30/298 (10%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICI 113
           ++  + +     +             + AG G GKT +    + WL+        +I+ +
Sbjct: 1   MDITDIIAPLNEAQREAVTAPDRSLLVLAGAGSGKTRVLIHRIAWLLRAEGVSPHAILAV 60

Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173
             +                         ++ +  L    ++           +       
Sbjct: 61  TFTNKAANEM----------KARLEALLDLSTRDLWVGTFHGLAHRLLRRHAADAGLHEG 110

Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233
             +     D            +  DEA   P    +  +    +           N    
Sbjct: 111 --FQILDSDDQYRLIRRLLKTLELDEAR-WPPRQIQWYINAQKDQGRRAR-----NLPDS 162

Query: 234 NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293
              F          +  Y+   +    +D          +  D+         +F    V
Sbjct: 163 YDPFERQM---RRIYLAYEELCQRSGLVDFAELLLRTHEFLRDNADVLAHYQERFQHVLV 219

Query: 294 NNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
           + F   N ++ A  R    D     ++G D      D++ +   RG  +E++  +   
Sbjct: 220 DEFQDTNDVQYAWLRLLTQDRDNLSVVGDD------DQS-IYGWRGAKVENLHRFRRD 270


>gi|15611679|ref|NP_223330.1| hypothetical protein jhp0612 [Helicobacter pylori J99]
 gi|4155165|gb|AAD06193.1| putative [Helicobacter pylori J99]
          Length = 450

 Score = 43.4 bits (100), Expect = 0.063,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 54/198 (27%), Gaps = 35/198 (17%)

Query: 29  KNFVMRFFPWGIKG-------KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81
           ++F+     W            PL    +P   Q E +E    +     N          
Sbjct: 145 EDFIYSRIDWEKFDPTKTEDEIPLCDKKRPRPHQTEAIEKTKEYFSDPKNARGK-----L 199

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN----------------TLW 125
           I A  G GKT  +    L ++ +      + +A S   L                   + 
Sbjct: 200 IMAC-GTGKTYTS----LKIMESLDPKITLFLAPSIALLSQTFREYAQEKSEPFYASIVC 254

Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI--DSKHYTITCRTYSEERPDT 183
           ++     S        +   L + PS    ++L        ++K + I     S  R   
Sbjct: 255 SDDKTGQSKNEDNDDIKFSELPIKPSTRLEDILSTYEKAQKENKRFIIFSTYQSALRIKE 314

Query: 184 FVGPHNTHGMAVFNDEAS 201
                      +  DEA 
Sbjct: 315 AQEAGLNGIDLIICDEAH 332


>gi|85711466|ref|ZP_01042524.1| putative ATP-dependent helicase [Idiomarina baltica OS145]
 gi|85694618|gb|EAQ32558.1| putative ATP-dependent helicase [Idiomarina baltica OS145]
          Length = 1047

 Score = 43.4 bits (100), Expect = 0.063,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 48/198 (24%), Gaps = 30/198 (15%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P  +Q   ++ +           +       +SA  G GKT + A              I
Sbjct: 325 PKPFQQIILDQLQN------ERDHGRYKNLLVSA-TGTGKTVMAAL---------DYRRI 368

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
                 + +L      E     S+   RH     +               S        +
Sbjct: 369 CSQEGGQPRLLFVAHREQILQQSLQVFRHVLRDSN----------FGELLSGNHQPDSDS 418

Query: 171 ITCRTYSEERPDTFVGPHNTH-GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
               T        +   H+ +    V  DE         + I    T   P     +T+ 
Sbjct: 419 HLFATIQTLNSRDYTTRHDENYWNMVIIDECHHIEAASFQRITEALT---PKYLLGLTAT 475

Query: 230 TRRLNGWFYDIFNIPLED 247
             R +G        P  D
Sbjct: 476 PERADGLNIMRHFDPRPD 493


>gi|224582696|ref|YP_002636494.1| hypothetical protein SPC_0883 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224467223|gb|ACN45053.1| putative phage protein [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 591

 Score = 43.4 bits (100), Expect = 0.063,   Method: Composition-based stats.
 Identities = 41/351 (11%), Positives = 78/351 (22%), Gaps = 76/351 (21%)

Query: 38  WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97
           +               W  E +     H   N+           I   R IG T   A+ 
Sbjct: 126 YKKNDISSLTQEDFDAWADEHLFEYQKHLRRNIGQLVRN-----ILKSRQIGATWYFAFE 180

Query: 98  MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
                       I   A+        + AE  +   +     +F +              
Sbjct: 181 AFENAVMTGDPQIFLSASK-------VQAEYFRSYIVNIAEQYFGITLTGNPIRLSNGAE 233

Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFF 215
           L       +     T ++YS                 ++ DE    P+   +N+      
Sbjct: 234 LRFLSTNKN-----TAQSYSGH---------------LYCDEYFWVPNFTKLNEVASAMA 273

Query: 216 TELNPNRFWIMTSNTRRLNG-----WFYDIFNIPLEDWKRYQIDTRT--------VEGID 262
           T           S            W  D +    +     +  T               
Sbjct: 274 THDKWRT--TYFSTPSAKTHQAYPFWTGDEWKRGSKKRTAIKFPTFDELRDGGRVCPDGQ 331

Query: 263 SGFHEGIISRYGLDSDVARIE--------------ILGQFPQQEVNNFIPHNYIEEA--- 305
             +   +        ++A IE               +  F     ++    + +E     
Sbjct: 332 WRYVITMEDAIAGGFNLANIEKLRNRYNTATFNMLYMCVFVD-SKDSVFSFSDLEACGVE 390

Query: 306 --MSREAIDDLYAPL----IMG-CDIAGEGGDKTVVVFRRGNIIEHIFDWS 349
               ++   D   P     + G  D A  G D +  V      +  +  + 
Sbjct: 391 VDTWQDHNPDAARPFGDRPVWGGFDPARSG-DLSCFVIV-APPMFAVEKFR 439


>gi|189466065|ref|ZP_03014850.1| hypothetical protein BACINT_02435 [Bacteroides intestinalis DSM
           17393]
 gi|189434329|gb|EDV03314.1| hypothetical protein BACINT_02435 [Bacteroides intestinalis DSM
           17393]
          Length = 784

 Score = 43.4 bits (100), Expect = 0.063,   Method: Composition-based stats.
 Identities = 33/267 (12%), Positives = 77/267 (28%), Gaps = 25/267 (9%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRP-GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           + AG G GKT +  + + +L+       +I+ +  +    +  +   +++ +     RH 
Sbjct: 26  VIAGAGSGKTRVLTYKIAYLLENGYQPWNILALTFTNKAARE-MKERIARQVGDQRARHL 84

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
           +     S+     + E +                 ++            +    +  DE 
Sbjct: 85  WMGTFHSIFLRILHVEAV----------NIGFTSQFTIYDTADSKSLMRSIIKEMGLDEK 134

Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRL--NGWFYDIFNIPLEDWKRYQIDTRTV 258
              P      +    +    +        + +    G          + + RY    R  
Sbjct: 135 VYKPGN----VQARISNAKNHLVSPAAYASNKEAYEGDCAAKMPAIRDIYHRYWDRCRQA 190

Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
           + +D             D          QF    V+ +   NY + ++  +   D     
Sbjct: 191 DAMDFDDLLFYTFILFRDHPEVLARYQEQFRYILVDEYQDTNYAQHSIVLQLAKDHQQVC 250

Query: 319 IMGCDIAGEGGDKTVVVFRRGNIIEHI 345
           ++       G D   +   RG  I++I
Sbjct: 251 VV-------GDDAQSIYSFRGADIDNI 270


>gi|309778104|ref|ZP_07673041.1| ATP-dependent RNA helicase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914110|gb|EFP59913.1| ATP-dependent RNA helicase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 789

 Score = 43.4 bits (100), Expect = 0.064,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 42/159 (26%), Gaps = 5/159 (3%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
           E    +   C          I++ +     G GKT  +    L          II +A  
Sbjct: 248 ELRTDISNQCKE-FGCQPSGIYRLS--CPTGSGKTLASLRYALQHAQVYRKKHIIYVAPY 304

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
           +T L+         +   +   H   +         +Y+    + + + +        T 
Sbjct: 305 KTILEQNAEVMKQFFSEDIVLEHHSNIIPSEYTDYDYYSSSWNKPVILTTAVRFFD--TL 362

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
            ++R       H      V  DEA   P           
Sbjct: 363 FKDRTTDVRRFHQLADSIVILDEAQKIPVKTVSMFNEMM 401


>gi|195380381|ref|XP_002048949.1| GJ21324 [Drosophila virilis]
 gi|194143746|gb|EDW60142.1| GJ21324 [Drosophila virilis]
          Length = 1366

 Score = 43.4 bits (100), Expect = 0.064,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 43/158 (27%), Gaps = 8/158 (5%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
               +    G+GKT + + +M  L    P   +I +A +   +      +++    ++P 
Sbjct: 73  RNTLVVLPTGLGKTFIASVVMYNLYRWYPKSKLIFMAPTRPLVSQ----QIAACQKIMPF 128

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
                ++     P    AEL        +    +             +         +  
Sbjct: 129 PAEDTVELTGRLPRAKRAELWLSKRVFFATPQVVQS---DMLDTGDGMQFPYMSIKLLVV 185

Query: 198 DEAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
           DEA           +       NP    +  S T    
Sbjct: 186 DEAHRAKGRYAYTQVTESIMARNPYFRMLALSATPGRT 223


>gi|317009317|gb|ADU79897.1| type II R-M system protein [Helicobacter pylori India7]
          Length = 491

 Score = 43.4 bits (100), Expect = 0.064,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 51/201 (25%), Gaps = 39/201 (19%)

Query: 29  KNFVMRFFPWGIKGK-----PLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS 83
           ++F+     W          PL    +P   Q E + A   +     N          I 
Sbjct: 144 EDFIYSQIDWEKLDTTQSELPLCDKKKPRPHQTEAINATKEYFSDPKNTRGK-----LIM 198

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK-----WLSMLPHR 138
           A  G GKT  +    L ++        + +  S   L    + E ++     + + +   
Sbjct: 199 AC-GTGKTYTS----LKIMEALDPKITLFLVPSIALLSQ-TFREYAQEKSEPFYASIVCS 252

Query: 139 HWFEMQSLSLHPSGWYAELLEQSM------------------GIDSKHYTITCRTYSEER 180
                +           ++    +                    ++K + I     S  R
Sbjct: 253 DDKVGKGKKNKNDDGIDDINFSELPLKPSTRLEDILSVYEKAKKENKRFIIFSTYQSALR 312

Query: 181 PDTFVGPHNTHGMAVFNDEAS 201
                         +  DEA 
Sbjct: 313 IQEAQRMGLNGIDLIICDEAH 333


>gi|261365839|ref|ZP_05978722.1| CRISPR-associated helicase Cas3 domain protein [Neisseria mucosa
           ATCC 25996]
 gi|288565598|gb|EFC87158.1| CRISPR-associated helicase Cas3 domain protein [Neisseria mucosa
           ATCC 25996]
          Length = 760

 Score = 43.0 bits (99), Expect = 0.065,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 47/175 (26%), Gaps = 14/175 (8%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
             G GKT  +    L          +I +    + ++    AE  K    L  +   E  
Sbjct: 266 PTGGGKTFTSMAFALEHAKRHDMRRVIYVIPFTSIIEQNA-AEFRKAFGELGEQAVLEHH 324

Query: 145 SLSLHPS-GWYAELLEQSMGIDSKHYTITCRTYS-------EERPDTFVGPHNTHGMAVF 196
           S              +  +  ++    I   T          +R       HN  G  + 
Sbjct: 325 STFDDGKLQNETTKDKLRLASENWDAPIVVTTAVQFFESLFADRSSRCRKLHNIAGSVII 384

Query: 197 NDEASGTPDI----INKSILGFFTELNPNRFWIMTSNTR-RLNGWFYDIFNIPLE 246
            DEA   P      I ++I       + +      +    +    FY  F    E
Sbjct: 385 LDEAQMLPLNLLLSIMQAIKELAQNYHCSVVMCTATQPAVQAENGFYRGFENVRE 439


>gi|331250704|ref|XP_003337958.1| helicase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309316948|gb|EFP93539.1| helicase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 1411

 Score = 43.0 bits (99), Expect = 0.065,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 44/162 (27%), Gaps = 27/162 (16%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS- 109
           P  +Q E +E                     I A  G GKT +   ++ W        + 
Sbjct: 21  PRLYQTELLEE-------------AKKRNIIIRADTGTGKTIVAVNLIAWTAVKTKAKNK 67

Query: 110 ----IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
                  +  +           + K  ++    +  ++Q    +   W++EL E  +   
Sbjct: 68  NHQIQAFLVPTRPLAHQQA-EYIQKHCTLRIKAYTGDLQPELWNIRKWHSELNEVDV--- 123

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207
                 T + + +     +          +  DEA       
Sbjct: 124 ---LVSTAQIFYDLISKGYWKL--EDVSLLIFDEAHHCRKNH 160


>gi|295148218|ref|NP_001171151.1| Fanconi anemia, complementation group M [Xenopus laevis]
 gi|223929916|gb|ACN24616.1| Fanconi anemia protein [Xenopus laevis]
          Length = 2166

 Score = 43.0 bits (99), Expect = 0.065,   Method: Composition-based stats.
 Identities = 17/157 (10%), Positives = 40/157 (25%), Gaps = 12/157 (7%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              +    G+GKT + A +M       P   I+ +A ++  +      ++     ++   
Sbjct: 208 NTLVCLPTGLGKTFIAAVVMYNFYRWYPSGKIVFMAPTKPLVAQ----QIEACFRVMGIP 263

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                +      +     + E           +         P             +  D
Sbjct: 264 QGHMAEMTGSTQAQNRKNIWETHRVFFLTPQVMVNDLTRGACP-------ALEIKCLVID 316

Query: 199 EASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
           EA     +     ++   T        +  S T   +
Sbjct: 317 EAHKALGNHAYCQVVRELTNYTNQFRILALSATPGGD 353


>gi|319891801|ref|YP_004148676.1| Phage terminase large subunit [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161497|gb|ADV05040.1| Phage terminase large subunit [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 547

 Score = 43.0 bits (99), Expect = 0.066,   Method: Composition-based stats.
 Identities = 28/247 (11%), Positives = 74/247 (29%), Gaps = 34/247 (13%)

Query: 3   RLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAV 62
           +L+   +  ++ +++       +   + F         KG+      +   +Q  ++ A+
Sbjct: 29  KLLDDMEHHDKYIYDESKAERPIAFIERFCRHS-----KGELAGKPLKLDLFQKAYISAL 83

Query: 63  DVHCHSNVN--NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSET 118
                 +        + F      GR  GKTT+ + + L+++      G  +  +A+   
Sbjct: 84  FGFVDKDTGYRRYTESFFFV----GRKNGKTTMLSAIALYMMIADGESGSEVYSVASKRD 139

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
           Q  N L+    +   M+                 ++A    +   +     ++       
Sbjct: 140 QA-NILF---DQAHEMIVQSPDLNKNIRKRKSDLYFAHNFSKMQSLAKNSNSLD------ 189

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
                       +   V  DE     D  + + +    +        ++T+        F
Sbjct: 190 ----------GLNAHLVVIDELHSIQDRNLYEVMKQSQSARTQPLLIMITTAGTHRGTIF 239

Query: 238 YDIFNIP 244
            D++   
Sbjct: 240 DDLYEYA 246


>gi|156035735|ref|XP_001585979.1| hypothetical protein SS1G_13071 [Sclerotinia sclerotiorum 1980]
 gi|154698476|gb|EDN98214.1| hypothetical protein SS1G_13071 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1974

 Score = 43.0 bits (99), Expect = 0.066,   Method: Composition-based stats.
 Identities = 15/123 (12%), Positives = 33/123 (26%), Gaps = 10/123 (8%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               + +  G GKT      M W    +PG  ++ IA  +  ++  +    ++    +  +
Sbjct: 1163 NVLLGSPTGSGKTIACELAMWWAFREKPGSKVVYIAPMKALVRERVKDWGARLTKQMGLK 1222

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               E+   +   +    +        +         T                   V  D
Sbjct: 1223 -LVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWTTRGYV---------RQVSLVIID 1272

Query: 199  EAS 201
            E  
Sbjct: 1273 EIH 1275


>gi|82751447|ref|YP_417188.1| phage-associated terminase large subunit [Staphylococcus aureus
           RF122]
 gi|215401206|ref|YP_002332511.1| putative terminase large subunit [Staphylococcus phage
           phiSauS-IPLA88]
 gi|82656978|emb|CAI81415.1| phage-associated terminase large subunit [Staphylococcus aureus
           RF122]
 gi|215260433|gb|ACJ64564.1| gp36 [Staphylococcus phage phiSauS-IPLA88]
          Length = 429

 Score = 43.0 bits (99), Expect = 0.066,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 69/245 (28%), Gaps = 22/245 (8%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
            N + ++  +   RG  K+   A   ++ I      +I+ +       K + + ++    
Sbjct: 20  HNKSFYRV-VKGSRGSKKSKTTAINFIYRIMKYDWANILVVRRFSNTNKQSTYTDLKWAT 78

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
           + L   H F+                   +        I  R   +    T +       
Sbjct: 79  NQLGVAHLFKFNES------------LPEITYKPTGQKILFRGLDDPLKITSITVDTGIL 126

Query: 193 MAVFNDEASGTPD-----IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NIP 244
              + +EA           + +SI G +   +  +   +T N      W    F      
Sbjct: 127 CWAWFEEAYQIETFAKFSTVVESIRGSYDSPDFFKQITVTFNPWSERHWLKSTFFDEETK 186

Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE 304
           L +        R  E +D    E     Y  +   ARI   G +          +  + +
Sbjct: 187 LNNTFSDTTTYRVNEWLDKVDIERYEDLYIKNPRRARIVCDGDW-GVAEGLVFDNFKVTD 245

Query: 305 AMSRE 309
              RE
Sbjct: 246 FDWRE 250


>gi|333029139|ref|ZP_08457202.1| putative helicase-like protein [Streptomyces sp. Tu6071]
 gi|332742347|gb|EGJ72789.1| putative helicase-like protein [Streptomyces sp. Tu6071]
          Length = 928

 Score = 43.0 bits (99), Expect = 0.067,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 74/282 (26%), Gaps = 34/282 (12%)

Query: 52  HRWQLEFMEAVDVHCH--SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
            + Q+E M  +       +  +  +    +  + +  G GKT   A   L L    P   
Sbjct: 19  RKHQVELMSDLRKWVRVAARESARSGRGARATVVSATGTGKTISAAVAALEL---FPSGR 75

Query: 110 IICIANSETQLKNT--LWAEVSKWLSM----------LPHRHWFEMQSLSLHPSGWYAEL 157
           ++ +  +   L  T   W  V     M          L         +  +  + W  + 
Sbjct: 76  VLVMVPTLDLLVQTAQSWRAVGHTAPMVGVCSLPGDLLLEELRVRTTTHPIRLALWAGQG 135

Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGP---HNTHGMAVFNDEA---SGTPDIINKSI 211
               +   S       +    E      G              DEA   +G+      +I
Sbjct: 136 PVVVLATYSSLVGGDGQGGPLEAALAGSGLYGQRMDGFDLAVVDEAHRTAGSAAKPWAAI 195

Query: 212 LGFFTELNPNRFWIMTS----NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267
                    +R ++  +       R +    +       +           EG    +  
Sbjct: 196 HDNARIPAAHRLYLTATPRVLAPARPDR--DEDQEEGGGEAPALVTMANDPEGEYGAWIH 253

Query: 268 GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309
            +       S+    +IL  F    +    P   + E M RE
Sbjct: 254 EL-----GLSEAIERKILAPFEIDVLEITDPEPELMEGMDRE 290


>gi|126000006|ref|YP_001039677.1| TerL large terminase subunit-like protein [Erwinia amylovora phage
           Era103]
 gi|121621862|gb|ABM63436.1| TerL large terminase subunit-like protein [Enterobacteria phage
           Era103]
 gi|311875245|emb|CBX44504.1| large terminase subunit protein [Erwinia phage phiEa1H]
 gi|311875366|emb|CBX45107.1| large terminase subunit protein [Erwinia phage phiEa100]
          Length = 624

 Score = 43.0 bits (99), Expect = 0.067,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 71/250 (28%), Gaps = 36/250 (14%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
           R Q + +  +               ++  + A RG  KTT+ A   ++ I  RP   I+ 
Sbjct: 52  RIQADILRFMFT----------GKKYRM-VEAQRGQAKTTIAAIYAVFCIIHRPHFRILI 100

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            + +  + +     E++ W+  +     F    +            + S+     HYT+ 
Sbjct: 101 SSQTSKRAE-----EIAGWVIKI-----FRGLDILEFMMPDIYSGDKASIRGFEIHYTLR 150

Query: 173 CRTYSEERP--DTFVGPHNTHGMAVFNDE-------ASGTPDIINKSILGFFTELNPNRF 223
               S                   +  D+       A+    +  +     F  +N    
Sbjct: 151 GSGASPSVACYSIEGSMQGARADLIIADDVESLQNSATAAGRVKLEEATKEFESINQTGD 210

Query: 224 WIMTSNTRRLNGWFYD------IFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277
            +     + +N  + +         I    +   +      + +     E + +   L  
Sbjct: 211 ILYLGTPQSINSIYNNLPSRGYQLRIWPGRYPTVEQQVSYGDFLAPLIIEDMEANPELRR 270

Query: 278 DVARIEILGQ 287
                 + GQ
Sbjct: 271 GGGITRLQGQ 280


>gi|116008407|ref|NP_650971.2| CG7922 [Drosophila melanogaster]
 gi|113194811|gb|AAF55897.2| CG7922 [Drosophila melanogaster]
          Length = 1489

 Score = 43.0 bits (99), Expect = 0.067,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 53/211 (25%), Gaps = 11/211 (5%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              +    G+GKT + A +M       P   I+ +A +   +   + A       ++P  
Sbjct: 73  NTLVVLPTGLGKTFIAAVVMYNFYRWYPKGKIVFMAPTRPLVSQQIHASQK----IMPFP 128

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               +Q     P    AEL        +    +          D            +  D
Sbjct: 129 SEDTVQLTGQLPRPKRAELWASKRVFFATPQVVHS---DMLEADGECSFPFGSIKLIVVD 185

Query: 199 EAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLN--GWFYDIFNIPLEDWKRYQIDT 255
           EA           +       N     +  S T             N+ + + +     +
Sbjct: 186 EAHRAKGRYAYTQVADCLMARNRYFRMLALSATPGRTMEDVAAVCRNLYISNLQVRWDTS 245

Query: 256 RTV-EGIDSGFHEGIISRYGLDSDVARIEIL 285
             V   I       I+          R  +L
Sbjct: 246 IDVQPYIHRRTIRTIVVSLKERIKEPRERLL 276


>gi|331245260|ref|XP_003335267.1| nucleolus protein [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309314257|gb|EFP90848.1| nucleolus protein [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 1092

 Score = 43.0 bits (99), Expect = 0.068,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 48/150 (32%), Gaps = 15/150 (10%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q + +            +S        ++A RG GK+     M + +       +I   +
Sbjct: 271 QAKTLMEFTSSITEKTLSST-----VTLTASRGRGKSAAL-GMAIAVAVAHSYSNIFVTS 324

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            S   LK  L+  + K L+ L +    +          W   ++   +  + +      +
Sbjct: 325 PSPENLKT-LFEFIFKSLTALGYEEHLDYNVHQSSNPEWKNCIVRVDIFRNHR------Q 377

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
           T    +P  +          V  DEA+  P
Sbjct: 378 TIQYIQPQDYKVLG--QAELVVIDEAAAIP 405


>gi|164659175|ref|XP_001730712.1| hypothetical protein MGL_2166 [Malassezia globosa CBS 7966]
 gi|159104609|gb|EDP43498.1| hypothetical protein MGL_2166 [Malassezia globosa CBS 7966]
          Length = 838

 Score = 43.0 bits (99), Expect = 0.068,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 54/181 (29%), Gaps = 14/181 (7%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G+GKT      M+ L+   P    + +A +   L+     E+ K+   L    W   Q  
Sbjct: 244 GMGKT----IQMISLLVADPKRPSLVVAPTVAILQ--WRNEMQKYAPGLRVVVWHGAQRS 297

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTIT--CRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
               +    +++  S  +    +       T +          H      +  DEA    
Sbjct: 298 RDRDTLSTVDVVLTSYAVLESTFRRDRYGVTRNGRHVREQSLLHAMKWRRIILDEAHHIK 357

Query: 205 DIINKSILGFFTELNPNRFWIMTSNT-RRLNGWFYDIFNIPLED----WKRYQIDTRTVE 259
           +  + +    F   +    W ++    +   G  Y +      D    +   Q   ++  
Sbjct: 358 ERTSNTARSAFALQSD-FKWCLSGTPLQNRVGELYTMVRFLGGDPFAFYYCRQCSCKSAS 416

Query: 260 G 260
            
Sbjct: 417 W 417


>gi|171741108|ref|ZP_02916915.1| hypothetical protein BIFDEN_00175 [Bifidobacterium dentium ATCC
           27678]
 gi|171276722|gb|EDT44383.1| hypothetical protein BIFDEN_00175 [Bifidobacterium dentium ATCC
           27678]
          Length = 482

 Score = 43.0 bits (99), Expect = 0.069,   Method: Composition-based stats.
 Identities = 35/307 (11%), Positives = 65/307 (21%), Gaps = 55/307 (17%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ    +        +         +  +   R  GK+TL            P   I  
Sbjct: 35  PWQRYVADVAGE---IDPATGTYYYDRVILGTPRQCGKSTLIDTEDTRNAQLGPDRKIYY 91

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           +A +    +         ++  L       +       +G             +  +   
Sbjct: 92  LAQTGKDAE----KHFKDYVQQLAKSRLAPIACRPRLSNGGM------EQRFINGSFIC- 140

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI------M 226
                     T V  H T       DEA    D   K IL         R         +
Sbjct: 141 ------PLAVTKVAGHGTQMDKFTIDEAFSLDDETGKLILDGMAPTMNTRLHFTGVQPQI 194

Query: 227 TSNTRRLN--------------------GWFYDIFNIPLE-DWKRYQIDTRTVEGIDSGF 265
              +                           +  F IP + D +  Q   +        +
Sbjct: 195 WITSTEGTADSTFLNGLLDGLRAGDVPRRTCWFDFGIPADADPEDLQTILKWHPAAGLLW 254

Query: 266 HEGIISRYG---LDSDVARIEILGQFPQQE-VNNFIPHNYIEEAMSREAIDDL--YAPLI 319
               +  +      +        G        +  I     +  ++     D     PL+
Sbjct: 255 GLDQLRDFRGQFEGNAAGWARAFGNRRDTGVADRVIDETLWQATVATPIGPDRLDGRPLV 314

Query: 320 --MGCDI 324
                D+
Sbjct: 315 FAAAVDV 321


>gi|307200842|gb|EFN80895.1| DNA2-like helicase [Harpegnathos saltator]
          Length = 963

 Score = 43.0 bits (99), Expect = 0.070,   Method: Composition-based stats.
 Identities = 30/306 (9%), Positives = 79/306 (25%), Gaps = 35/306 (11%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
           E M  ++      V  +        +    G GKT     ++   +  +   +++  A++
Sbjct: 658 EMMRDLNEDQQRAVLRAVAAEEYVLVKGMPGTGKTQTLVVLV--ELLLKLDFTVLITAHT 715

Query: 117 ETQLKNTLWAEVSKWLSMLPHR-----HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            + + N L   + + +  L        H         + +       +  M  + K    
Sbjct: 716 HSAVDNVLLKLLDRNIDFLRLGATKQVHPLLTCKTEEYATKCCDTPEKLEMLYNDKRVVG 775

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
               Y    P                DE++         +   ++       +++  +  
Sbjct: 776 VT-CYGAYHP----LLRRRSFDVCVVDESTQVTQPT--VLRPLYSARR----FVLVGDPN 824

Query: 232 R--LNGWFYDIFNIPLEDWKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQF 288
           +            +  ++    ++D+      +   +          +    R +++   
Sbjct: 825 QLPPVVKSRTAVKLGADESLFVRLDSENNTVNLTKQYRMNRRIMKLANDTAYRGKLMPSN 884

Query: 289 PQQEVNNFIPHNY-IEEAMSREAIDD---LYAPLIMGCDIAGEG----------GDKTVV 334
            Q E    I  +  +  +                +M  D                DK V+
Sbjct: 885 KQVENATLICAHAEVLSSCEAWVRRTLSRQLDDSVMVLDTGSTRDFNVNESYVIDDKNVI 944

Query: 335 VFRRGN 340
             R G 
Sbjct: 945 RLRDGE 950


>gi|332027148|gb|EGI67241.1| Activating signal cointegrator 1 complex subunit 3 [Acromyrmex
            echinatior]
          Length = 2120

 Score = 43.0 bits (99), Expect = 0.070,   Method: Composition-based stats.
 Identities = 21/177 (11%), Positives = 46/177 (25%), Gaps = 25/177 (14%)

Query: 45   LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            L +FS  +  Q +    +    +              + A  G GKT      M  +   
Sbjct: 1286 LYNFSHFNPIQTQIFHCLYHTDN-----------NVLLGAPTGSGKTIAAEIAMFRVFKQ 1334

Query: 105  RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
             P   ++ IA  +  ++      ++ W   L  R    +  L           +   + +
Sbjct: 1335 NPDQKVVYIAPLKALVRER----INDWKERLEERLGKRVVEL--------TGDVSPDIKM 1382

Query: 165  DSKHYTITCRTYSEERPDTFVGPHN--THGMAVFNDEASGTPDIINKSILGFFTELN 219
             +    I       +         +       +  DE     +     +    +  N
Sbjct: 1383 IASASVIVTTPEKWDGISRSWQTRSYVKKVALIVIDEIHLLGEDRGPVLEVIISRTN 1439


>gi|306822253|ref|ZP_07455634.1| possible helicase [Bifidobacterium dentium ATCC 27679]
 gi|309802831|ref|ZP_07696933.1| helicase C-terminal domain protein [Bifidobacterium dentium
           JCVIHMP022]
 gi|304554415|gb|EFM42321.1| possible helicase [Bifidobacterium dentium ATCC 27679]
 gi|308220584|gb|EFO76894.1| helicase C-terminal domain protein [Bifidobacterium dentium
           JCVIHMP022]
          Length = 1050

 Score = 43.0 bits (99), Expect = 0.070,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 61/185 (32%), Gaps = 32/185 (17%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P+  Q+E +  +        +       +  I +  G GKT L+A    + +       +
Sbjct: 239 PNAMQVEALMNLAQLRKQGES-------RAIIISATGTGKTYLSA----FDVRQFKPKRM 287

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + IA  E  LK     E  + +   P +                      S   D K+  
Sbjct: 288 LYIAQQEQILKKA--KESYQKVLGCPAKELGLFSG--------------ISKEHDRKYLF 331

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
            T +T S  RP+  V         +  DE         K I+ +FT   P+    MT+  
Sbjct: 332 ATVQTMS--RPEVLVQFGKDDFDYILIDEVHHAAADSYKRIIDYFT---PDFMLGMTATP 386

Query: 231 RRLNG 235
            R +G
Sbjct: 387 ERTDG 391


>gi|283456569|ref|YP_003361133.1| DNA/RNA helicase [Bifidobacterium dentium Bd1]
 gi|283103203|gb|ADB10309.1| DNA/RNA helicase (DEAD/DEAH box family) [Bifidobacterium dentium
           Bd1]
          Length = 1050

 Score = 43.0 bits (99), Expect = 0.070,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 61/185 (32%), Gaps = 32/185 (17%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P+  Q+E +  +        +       +  I +  G GKT L+A    + +       +
Sbjct: 239 PNAMQVEALMNLAQLRKQGES-------RAIIISATGTGKTYLSA----FDVRQFKPKRM 287

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + IA  E  LK     E  + +   P +                      S   D K+  
Sbjct: 288 LYIAQQEQILKKA--KESYQKVLGCPAKELGLFSG--------------ISKEHDRKYLF 331

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
            T +T S  RP+  V         +  DE         K I+ +FT   P+    MT+  
Sbjct: 332 ATVQTMS--RPEVLVQFGKDDFDYILIDEVHHAAADSYKRIIDYFT---PDFMLGMTATP 386

Query: 231 RRLNG 235
            R +G
Sbjct: 387 ERTDG 391


>gi|251792124|ref|YP_003006844.1| CRISPR-associated helicase Cas3 domain-containing protein
           [Aggregatibacter aphrophilus NJ8700]
 gi|247533511|gb|ACS96757.1| crispr-associated helicase Cas3 domain protein [Aggregatibacter
           aphrophilus NJ8700]
          Length = 763

 Score = 43.0 bits (99), Expect = 0.070,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 48/175 (27%), Gaps = 14/175 (8%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
             G GKT  +    L          +I +    + ++    AE  K    L  +   E  
Sbjct: 269 PTGGGKTFTSMAFALEHAKRHDMRRVIYVIPFTSIIEQNA-AEFRKAFGELGEQAVLEHH 327

Query: 145 SLSLHPS-GWYAELLEQSMGIDSKHYTITCRTYS-------EERPDTFVGPHNTHGMAVF 196
           S          A   +  +  ++    I   T          +R       HN  G  + 
Sbjct: 328 STFDDGKLQNEATKDKLRLASENWDAPIVVTTAVQFFESLFADRSSRCHKLHNIAGSVII 387

Query: 197 NDEASGTPDI----INKSILGFFTELNPNRFWIMTSNTR-RLNGWFYDIFNIPLE 246
            DEA   P      I ++I       + +      +    +    FY  F    E
Sbjct: 388 LDEAQMLPLNLLLPIMQAIKELAQNYHCSVVMCTATQPAVQAENGFYRGFENVRE 442


>gi|171742334|ref|ZP_02918141.1| hypothetical protein BIFDEN_01443 [Bifidobacterium dentium ATCC
           27678]
 gi|171277948|gb|EDT45609.1| hypothetical protein BIFDEN_01443 [Bifidobacterium dentium ATCC
           27678]
          Length = 1050

 Score = 43.0 bits (99), Expect = 0.070,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 61/185 (32%), Gaps = 32/185 (17%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P+  Q+E +  +        +       +  I +  G GKT L+A    + +       +
Sbjct: 239 PNAMQVEALMNLAQLRKQGES-------RAIIISATGTGKTYLSA----FDVRQFKPKRM 287

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + IA  E  LK     E  + +   P +                      S   D K+  
Sbjct: 288 LYIAQQEQILKKA--KESYQKVLGCPAKELGLFSG--------------ISKEHDRKYLF 331

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
            T +T S  RP+  V         +  DE         K I+ +FT   P+    MT+  
Sbjct: 332 ATVQTMS--RPEVLVQFGKDDFDYILIDEVHHAAADSYKRIIDYFT---PDFMLGMTATP 386

Query: 231 RRLNG 235
            R +G
Sbjct: 387 ERTDG 391


>gi|164656084|ref|XP_001729170.1| hypothetical protein MGL_3637 [Malassezia globosa CBS 7966]
 gi|159103060|gb|EDP41956.1| hypothetical protein MGL_3637 [Malassezia globosa CBS 7966]
          Length = 869

 Score = 43.0 bits (99), Expect = 0.070,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 42/123 (34%), Gaps = 11/123 (8%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              ++   G+GKT + A ++L +    P   II +A +           V++        
Sbjct: 250 NVLVALPTGLGKTFIAAVVILNMFRWFPQGKIIFVAPTR--------PLVAQQQQACHSI 301

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                   ++  +G     L        + + +T +T+  +   +   P     + V  D
Sbjct: 302 CGLPW-DTAIELTGSKKRTLRDDEWHAKRIFYMTPQTFENDLLSSTCDPS--DVICVVVD 358

Query: 199 EAS 201
           EA 
Sbjct: 359 EAH 361


>gi|321448120|gb|EFX61322.1| hypothetical protein DAPPUDRAFT_340135 [Daphnia pulex]
          Length = 157

 Score = 43.0 bits (99), Expect = 0.071,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 4/93 (4%)

Query: 54  WQLEFMEAVDVHCHSNVNNSNPTIFKCAIS-AGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
           WQ      ++     +        +   +  AGRG GKT   A  +      +PG   + 
Sbjct: 30  WQ---FRWLNEQALKHQIEPAGDWWNIWLLLAGRGAGKTRAAAETLASWAWEQPGTRWLV 86

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
            A +   LK T +   S  + ++P     +  S
Sbjct: 87  SAPTSGDLKGTCFEGESGLIKVIPPLLIAKYNS 119


>gi|295675218|ref|YP_003603742.1| helicase domain protein [Burkholderia sp. CCGE1002]
 gi|295435061|gb|ADG14231.1| helicase domain protein [Burkholderia sp. CCGE1002]
          Length = 1173

 Score = 43.0 bits (99), Expect = 0.071,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 59/227 (25%), Gaps = 34/227 (14%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKT +   ++  L+       I+ +A           + V +W   L  +        
Sbjct: 131 GAGKTIMAGLLIRELLMRADAARILIVAP---------GSLVEQWQDELLEKFGLRFTLF 181

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
           S                 D     +   + SEE  +            V  DEA      
Sbjct: 182 SRELVDHSVTGNPFE-DHDLLVARLDQLSRSEELQEKLKLSRFD---LVVVDEAHKLSAT 237

Query: 207 INKS--------ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
              S         LG         F +MT+             N   ED++ + +     
Sbjct: 238 WFGSKINETKRFKLGQLLGSVARHFLLMTATP----------HNGKEEDFQLF-LSLLDS 286

Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA 305
           +     F +G        SD+ R  +     + +     P      A
Sbjct: 287 DRFYGKFRDGAHKV--DVSDLMRRMVKEDLLKFDGTRLFPERVAYTA 331


>gi|12045285|ref|NP_073096.1| DEAD-box ATP dependent DNA helicase [Mycoplasma genitalium G37]
 gi|255660071|ref|ZP_05405480.1| DEAD-box ATP dependent DNA helicase [Mycoplasma genitalium G37]
 gi|1723162|sp|P47664|Y425_MYCGE RecName: Full=Probable ATP-dependent RNA helicase MG425
 gi|3845018|gb|AAC72446.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Mycoplasma
           genitalium G37]
 gi|166078714|gb|ABY79332.1| ATP-dependent RNA helicase, DEAD/DEAH box family [synthetic
           Mycoplasma genitalium JCVI-1.0]
          Length = 449

 Score = 43.0 bits (99), Expect = 0.071,   Method: Composition-based stats.
 Identities = 18/166 (10%), Positives = 39/166 (23%), Gaps = 12/166 (7%)

Query: 66  CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG--MSIICIANSETQLKNT 123
                     +     + +  G GKT   A  ++  +          + IA +   ++  
Sbjct: 29  IQQISIPQFLSEKNLIVHSPTGTGKTAAFAIPIIEKLLKEDQTAKPTLVIAPTRELVEQI 88

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
                          +  + + L +          +Q   I +    I            
Sbjct: 89  ----------KTTFSNIAKNKKLRIISLIGGVPAWKQIKKIKTNPQIIVGTMGRIMDLLE 138

Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
               H +    +  DE     D   K  +    E   +   I   +
Sbjct: 139 RKAIHFSDLEHLIIDEVDLMLDRGFKKQIFNLLEQINSFKQIAVYS 184


>gi|332184062|gb|AEE26316.1| Terminase large subunit [Francisella cf. novicida 3523]
          Length = 602

 Score = 43.0 bits (99), Expect = 0.072,   Method: Composition-based stats.
 Identities = 38/252 (15%), Positives = 75/252 (29%), Gaps = 37/252 (14%)

Query: 43  KPLEHFSQPHRW-----QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97
            P    ++P RW     Q    +A++           P + K ++  G  +GKT L    
Sbjct: 35  LPPGTSAKPGRWKTIPYQQGVFDAIED----------PKVSKISLEWGAQLGKTALLNNT 84

Query: 98  MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
           + + I  +P   I+ +  SE+ LK   W E        P   + +     L        +
Sbjct: 85  IGYYIEHKPESQIM-MQPSESDLKT--WLETK----FNPMVDYSKSVQEKLAKPRGRDGV 137

Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD----IINKSILG 213
             Q M      + +           +           ++ DE  G            +  
Sbjct: 138 NNQKMKKYKGGFLMFAW------AGSPNTQRGRSAPKIYCDEVDGYERSPEGHPVNLVWQ 191

Query: 214 FFTELNPNRFWIMTSNTR-RLNGWFYDIFNIPLED----WKRYQIDTRTVEGIDSGFHEG 268
                   R  I+TS    + N +  D FN            +    +T++  +  + + 
Sbjct: 192 RAATFGRKRKLILTSTPTIKGNSFIDDSFNSGDRRRYYIPCPHCGHYQTLKWQNVQWQKD 251

Query: 269 IISRYGLDSDVA 280
               +   + + 
Sbjct: 252 EKGIHLPYTAMY 263


>gi|308272255|emb|CBX28861.1| hypothetical protein N47_B20070 [uncultured Desulfobacterium sp.]
          Length = 1762

 Score = 43.0 bits (99), Expect = 0.072,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 70/241 (29%), Gaps = 26/241 (10%)

Query: 8    DQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCH 67
             +K+ Q L   L+ A   +  K F+ RFFP   K       +  +      +E++     
Sbjct: 1068 MEKIRQALA--LVTAYFTMDRKGFIKRFFPDNHKEIERATSAASY---GRIVESLKNPIQ 1122

Query: 68   SNVNNSNPTIFKCAISAGRGIGKTTLN---AWMMLWLISTRPGMSIICIANSETQL--KN 122
             ++  S+P      I AG G GKTT+       +L +    PG  +    N    L  + 
Sbjct: 1123 ESIVCSSPED-NILILAGPGSGKTTVVIHRCAYLLRVERVPPGSILALCFNHSAALSIRK 1181

Query: 123  TLWAEVSK-----------WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             LW  +              L+M      F     ++           + + +++     
Sbjct: 1182 RLWDLIGSEARDVTVLTYHALAMRIAGRSFAQNDSAISKDKESLTKAFEDIILEAIDLLS 1241

Query: 172  TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG----FFTELNPNRFWIMT 227
              +      PD            +  DE           I         + +     +  
Sbjct: 1242 GQKELQGIEPDDIRDRLLGGYRHILVDEYQDIDQQQYHLISALAGRTLKDPDRKLSILAV 1301

Query: 228  S 228
             
Sbjct: 1302 G 1302


>gi|295697280|ref|YP_003590518.1| CRISPR-associated helicase Cas3 [Bacillus tusciae DSM 2912]
 gi|295412882|gb|ADG07374.1| CRISPR-associated helicase Cas3 [Bacillus tusciae DSM 2912]
          Length = 806

 Score = 43.0 bits (99), Expect = 0.072,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 38/166 (22%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
            +              NP      +    G+GKT     + L +   R    I+ +A   
Sbjct: 266 ALRQRVHQQAVERYRQNPEGDLYVLKLPTGLGKTLTALRVALEIAGDRGKERIVYVAPYL 325

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
           T L              +   H   M             L      + +  +    R + 
Sbjct: 326 TILSQAAGEIAKASGLEVMEHHSLSMTEDREWDDKAILLLESWQSPVVATTFNQMFRAFF 385

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
            +R    +         V  DE     D + +  L           
Sbjct: 386 AQRAQETLRLAGLENSVVIVDEPQIVDDSVWQPFLAMIQGAAREMN 431


>gi|261248365|emb|CBG26202.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
          Length = 589

 Score = 43.0 bits (99), Expect = 0.073,   Method: Composition-based stats.
 Identities = 40/354 (11%), Positives = 84/354 (23%), Gaps = 61/354 (17%)

Query: 34  RFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93
            F    I+      F Q   +QL++  A   H   +            I   R IG T  
Sbjct: 128 FFSDEAIEKLEELFFDQSFEYQLQWYRAGLEHRIRD------------ILKSRQIGATFY 175

Query: 94  NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF--EMQSLSLHPS 151
            +   L       G + I ++ S+TQ    ++ E     + L         +   +    
Sbjct: 176 FSREALLRALKT-GHNQIFLSASKTQAY--VFREYIIQFARLVDVDLTGDPIVIGNNGAK 232

Query: 152 GWYAELLEQSMGIDSKH-------YTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS--- 201
             +      +    +         +    +   +         H            +   
Sbjct: 233 LIFLGTNSNTAQSHNGDLYVDEIFWIPNFQKLRKVASGMASQKHLRSTYFSTPSTLAHGA 292

Query: 202 --GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
                  +         +       I  S++    G            W++       + 
Sbjct: 293 YPFWSGELFNKGRASAADR----IEIDISHSALAGGLLC-----ADGQWRQIVTIEDALA 343

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM----SREAIDDLY 315
           G  + F    + R   D D  +   + +F   +  +  P   ++  M            +
Sbjct: 344 GGCTLFDLDQLRRENSDED-FKNLFMCEFVD-DKASVFPFEELQRCMVDVMETWEDFAPF 401

Query: 316 A-------PLIMGCDIAGEGGDKTVVVFRRGN--------IIEHIFDWSAKLIQ 354
           A       P+ +G D +  G   +                 +     W      
Sbjct: 402 ADHPFGSRPVWIGYDPSHTGD--SAGCVVLAPPVVSGGKFRMLERHQWKGMDFA 453


>gi|255953117|ref|XP_002567311.1| Pc21g02470 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589022|emb|CAP95144.1| Pc21g02470 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1858

 Score = 43.0 bits (99), Expect = 0.073,   Method: Composition-based stats.
 Identities = 24/216 (11%), Positives = 61/216 (28%), Gaps = 20/216 (9%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P RWQ E ++ +D    +             I A    GKT ++ + M  ++       +
Sbjct: 792 PDRWQREVLDQIDAKKSAF------------IVAPTSAGKTFISFYAMRQILKEDHDGIL 839

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + +A ++  +        +++    P +        ++H   +     +    + +    
Sbjct: 840 VYVAPTKALVNQIAAEVQARFSKAFPAK-TSGKSVWAIHTRDYRINNPQGCQILITVPQI 898

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM---T 227
           +     +    + +          +  DE        +  +      ++P     +    
Sbjct: 899 LQIMLLNPSNANAWTPRLRR----IIFDEIHCIGQADDGVVWEQLLLMSPCPIIALSATV 954

Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
            N +    W          D K  Q   R  +    
Sbjct: 955 GNPQEFYNWLDFAQRTNGFDLKMIQHQHRYSDLRKY 990


>gi|303323243|ref|XP_003071613.1| DEAD/DEAH box helicase domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
 gi|240111315|gb|EER29468.1| DEAD/DEAH box helicase domain containing protein [Coccidioides
            posadasii C735 delta SOWgp]
          Length = 1910

 Score = 43.0 bits (99), Expect = 0.074,   Method: Composition-based stats.
 Identities = 20/217 (9%), Positives = 59/217 (27%), Gaps = 22/217 (10%)

Query: 50   QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
            +P  WQ + ++ +D                  + A    GKT ++ + M  ++       
Sbjct: 835  EPDEWQRKVLDEIDA------------KKSLFVVAPTSAGKTFISFYAMKKVLEDDDDGV 882

Query: 110  IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
            ++ +A ++  +        +++     H         +           +  + +    +
Sbjct: 883  LVYVAPTKALVNQIAAEIQARFSKSFKHGGKSVWGIHTRDYRINNPTGCQVLVTV---PH 939

Query: 170  TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM--- 226
             +     S     ++    ++    +  DE      + +  +      L P     +   
Sbjct: 940  ILQIMLLSPANATSW----SSRVKRIIFDEVHCIGQVDDGVVWEQLLLLAPCPIIALSAT 995

Query: 227  TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
              N ++   W          D    +   R  +    
Sbjct: 996  IGNPQKFCKWLQMTQKANGIDLTMIEHSHRYSDLRKY 1032


>gi|124004360|ref|ZP_01689206.1| hypothetical protein M23134_05802 [Microscilla marina ATCC 23134]
 gi|123990430|gb|EAY29929.1| hypothetical protein M23134_05802 [Microscilla marina ATCC 23134]
          Length = 537

 Score = 43.0 bits (99), Expect = 0.074,   Method: Composition-based stats.
 Identities = 39/266 (14%), Positives = 70/266 (26%), Gaps = 37/266 (13%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
            AG+G GKT     +   LI+  PG+     AN++ QL ++    V      L    + E
Sbjct: 32  MAGQGAGKTHGAGLISFRLITNFPGVFGFMGANTDMQLTDSTLYRVFLVWKDLGLEEYDE 91

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE-----ERPDTFVGPHNTHGMAVFN 197
                 +  G          G   K Y      ++         + +             
Sbjct: 92  YLGQGDYVVGTQPPRHFSREGHAFKSYRNKISFWNGCVVFIGSLENYKAHDGKEFAWAIL 151

Query: 198 DEASGTPDI-INKSILGFFTELNPNRFWIMT----------SNT---RRLNGWFYDIFNI 243
           DE   T +  + + ILG   +                     +           Y   + 
Sbjct: 152 DETKDTREEAVQEVILGRLRQQGLYISQTRVGALTSEEYDEGSPVAANLPFNPLYIFTSP 211

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG-----------QFPQQE 292
               W     D   +      + E I ++        + ++ G              +  
Sbjct: 212 AKVPWIN---DWFELS----EYEEEIKAKIYDPPQYFKKKVGGGSKFVVISATHLNLKNL 264

Query: 293 VNNFIPHNYIEEAMSREAIDDLYAPL 318
            +N+I       A  R  +     PL
Sbjct: 265 PSNYIQKQEANLASHRHGMLIYGDPL 290


>gi|168822412|ref|ZP_02834412.1| putative conserved hypothetical protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205341123|gb|EDZ27887.1| putative conserved hypothetical protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
          Length = 589

 Score = 43.0 bits (99), Expect = 0.075,   Method: Composition-based stats.
 Identities = 40/354 (11%), Positives = 84/354 (23%), Gaps = 61/354 (17%)

Query: 34  RFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93
            F    I+      F Q   +QL++  A   H   +            I   R IG T  
Sbjct: 128 FFSDEAIEKLEELFFDQSFEYQLQWYRAGLEHRIRD------------ILKSRQIGATFY 175

Query: 94  NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF--EMQSLSLHPS 151
            +   L       G + I ++ S+TQ    ++ E     + L         +   +    
Sbjct: 176 FSREALLRALKT-GHNQIFLSASKTQAY--VFREYIIQFARLVDVDLTGDPIVIGNNGAK 232

Query: 152 GWYAELLEQSMGIDSKH-------YTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS--- 201
             +      +    +         +    +   +         H            +   
Sbjct: 233 LIFLGTNSNTAQSHNGDLYVDEIFWIPNFQKLRKVASGMASQKHLRSTYFSTPSTLAHGA 292

Query: 202 --GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
                  +         +       I  S++    G            W++       + 
Sbjct: 293 YPFWSGELFNKGRASAADR----IEIDISHSALAGGLLC-----ADGQWRQIVTIEDALA 343

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM----SREAIDDLY 315
           G  + F    + R   D D  +   + +F   +  +  P   ++  M            +
Sbjct: 344 GGCTLFDLDQLRRENSDED-FKNLFMCEFVD-DKASVFPFEELQRCMVDVMETWEDFAPF 401

Query: 316 A-------PLIMGCDIAGEGGDKTVVVFRRGN--------IIEHIFDWSAKLIQ 354
           A       P+ +G D +  G   +                 +     W      
Sbjct: 402 ADHPFGSRPVWIGYDPSHTGD--SAGCVVLAPPVVSGGKFRMLERHQWKGMDFA 453


>gi|253699460|ref|YP_003020649.1| type III restriction protein res subunit [Geobacter sp. M21]
 gi|251774310|gb|ACT16891.1| type III restriction protein res subunit [Geobacter sp. M21]
          Length = 1042

 Score = 43.0 bits (99), Expect = 0.075,   Method: Composition-based stats.
 Identities = 39/323 (12%), Positives = 91/323 (28%), Gaps = 58/323 (17%)

Query: 4   LISTDQKLEQELHEMLMHAE--CVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEA 61
            +  D +        +  A      +   F                  +PH +Q   +EA
Sbjct: 276 FVPFDPEQPTLFRTAINRARHRSQDNPAIFFDL---------------RPHPFQERILEA 320

Query: 62  VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM-LWLISTRPGMSIICIANSETQL 120
           +          ++   ++  + A  G GKT + A+    +  + R    ++ IA+     
Sbjct: 321 LA------RERTSHDRWRNLVIAATGTGKTVIAAFDFKNFFEAKRRQARLLFIAHRL--- 371

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
              L      + ++L  +++ E+                  M  + + +      +    
Sbjct: 372 -EILQKAQGTFRNVLRDQNFGELLVGEYQAVRLEHLFCSVGMLANRRLWEQVGSGF---- 426

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
                         +  DEA         S    F    P     +T+   R++G     
Sbjct: 427 -----------YDYIVIDEAH---HSTASSYRPIFENFAPEILLGLTATPERMDGG---- 468

Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFH-----EGIISRYGLDSDVARIEILGQFPQQEVNN 295
            N+  +   R+  + R  E ++          G+     +  +       G++ +  + N
Sbjct: 469 -NVAADFGNRFAAEIRLPEALEEKLLCPFHYFGVADPIAISGEQFWRN--GKYNESALEN 525

Query: 296 FIPHNYIEEAMSREAIDDLYAPL 318
               + +      +AI       
Sbjct: 526 VYVMDNVRAKQRVDAIITALTRY 548


>gi|312087840|ref|XP_003145629.1| DEAD/DEAH box helicase [Loa loa]
 gi|307759209|gb|EFO18443.1| DEAD/DEAH box helicase [Loa loa]
          Length = 483

 Score = 43.0 bits (99), Expect = 0.076,   Method: Composition-based stats.
 Identities = 17/156 (10%), Positives = 46/156 (29%), Gaps = 11/156 (7%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGM-SIICIANSETQLKNTLWAEVSKWLSMLPHR 138
             + A  G GKT + + + +  ++ + G   ++ +A +       +      ++ ML   
Sbjct: 57  LLVQAKSGTGKTMVFSLLAVENLNAQFGRPQVLIVAPTREIASQIV-----SYIRML--- 108

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               +  + +   G    + E    +    + +   T              +H      D
Sbjct: 109 --APVVVIRMFVGGNEKGVAEDIQKLKKSIHIVVGTTGRLCHLVRINALRLSHVRLFVLD 166

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
           EA    +   +  + +     P    +   +     
Sbjct: 167 EADKLMEDNFQKEINYLFSALPPEKQVAVFSATYPY 202


>gi|312870719|ref|ZP_07730826.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus
           iners LEAF 3008A-a]
 gi|311093731|gb|EFQ52068.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus
           iners LEAF 3008A-a]
          Length = 458

 Score = 43.0 bits (99), Expect = 0.077,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 55/231 (23%), Gaps = 23/231 (9%)

Query: 40  IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99
            KG    +F +P   Q + +  +  H                + A  G GKT       L
Sbjct: 15  KKGLEKINFLKPTPVQQQVLPLLLAHQ------------NVVVQAVTGSGKTHAY----L 58

Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159
             I       ++C     T     L +++ K    L  R   E+     +  G      +
Sbjct: 59  IPIINDLDSELLCTQAVITAPSRELASQLYKVARQL--RDAAELNISIEYLGGGNDRTRQ 116

Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG-TPDIINKSILGFFTEL 218
                ++    I                          DEA           +      L
Sbjct: 117 LEKASNNAPQLIIATPGRLHDFAIKKIIKLDQVSTFIIDEADMTLDMGFLNQMDDIMVRL 176

Query: 219 NPNRFWIMTSN--TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267
             N      S     +L  +       P  ++      +     + +   +
Sbjct: 177 GTNVTIGAFSATIPVKLEQFLNKYMEHP--EFVVIDNPSVISPTVANDLID 225


>gi|195171938|ref|XP_002026759.1| GL13223 [Drosophila persimilis]
 gi|194111693|gb|EDW33736.1| GL13223 [Drosophila persimilis]
          Length = 348

 Score = 43.0 bits (99), Expect = 0.077,   Method: Composition-based stats.
 Identities = 21/172 (12%), Positives = 40/172 (23%), Gaps = 4/172 (2%)

Query: 60  EAVDVHCHSNVNNSNPTIFK-CAISAGRGIGKTTLNAWMMLWLISTRPGMSI--ICIANS 116
             V            P   +   +SA  G GKT   A  ++ L++ R    +  + +   
Sbjct: 170 RTVIPWILEAQGQPAPLRPRDICVSAPTGSGKTLAFAIPIVQLLNNRVRCKVRALVVLPV 229

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
                   +  +    S          +   L         + +          +T    
Sbjct: 230 AELALQV-FKVIRALCSKTELEVCLLSKQHRLEDEQEKLVEVYKGQIYSKADIVVTTPGR 288

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
             +      G        +  DEA    D   +  L  F +           
Sbjct: 289 LVDHLHATKGFCLKSLKFLVIDEADRIMDAFFQKRLEPFGQPRRETSKSAAG 340


>gi|145638668|ref|ZP_01794277.1| ATP-dependent RNA helicase [Haemophilus influenzae PittII]
 gi|145272263|gb|EDK12171.1| ATP-dependent RNA helicase [Haemophilus influenzae PittII]
          Length = 439

 Score = 43.0 bits (99), Expect = 0.078,   Method: Composition-based stats.
 Identities = 36/258 (13%), Positives = 67/258 (25%), Gaps = 32/258 (12%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           K    + +S+P   Q+E + A    C                SA  G GKTT      L 
Sbjct: 17  KALEKKGYSRPTAIQMEAIPAAMEECD------------VLGSAPTGTGKTTAFLLPALQ 64

Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
            +   P        I+ +  +         AE ++ L+   H +   +     + +    
Sbjct: 65  HLLDYPRRKPGPPRILVLTPTRELAMQV--AEQAEELAQFTHLNIATITGGVAYQNHGDV 122

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
               Q +        +        +              +  DEA     +         
Sbjct: 123 FNTNQDL--------VVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKI 174

Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275
                 R   +  +         D     L D  +           +          Y  
Sbjct: 175 AAETRWRKQTLLFSATLEGELLVDFAERLLNDPVKVD---AEPSRRERKKINQW--YYHA 229

Query: 276 DSDVARIEILGQFPQQEV 293
           DS+  +I++L +F + E 
Sbjct: 230 DSNEHKIKLLARFIETEE 247


>gi|194172973|ref|YP_002003617.1| PhoH-like protein [Escherichia phage rv5]
 gi|114796011|gb|ABI79185.1| PhoH-like protein [Escherichia phage rv5]
          Length = 262

 Score = 43.0 bits (99), Expect = 0.079,   Method: Composition-based stats.
 Identities = 18/160 (11%), Positives = 38/160 (23%), Gaps = 14/160 (8%)

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126
                +   +     ++   G GKT + +     L+       II         K + + 
Sbjct: 48  QQKYLDYLGSRKIIIVNGVFGSGKTFMASAYAGDLLRKNEIDKIIVARPYVQTGKTSGFK 107

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER--PDTF 184
             +    + P            +       +  +             +    E    ++ 
Sbjct: 108 PGNAMQKLWP------------YLRSMMDTICRRVGKGAFAAMLGDGQNSRIEICEVESI 155

Query: 185 VGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
            G        V  DEA  T      SI+   ++       
Sbjct: 156 RGRSFDERCFVLIDEAQQTNPEEMLSIITRISDQATLVIM 195


>gi|323497774|ref|ZP_08102788.1| ATP-dependent RNA helicase SrmB [Vibrio sinaloensis DSM 21326]
 gi|323317121|gb|EGA70118.1| ATP-dependent RNA helicase SrmB [Vibrio sinaloensis DSM 21326]
          Length = 398

 Score = 43.0 bits (99), Expect = 0.079,   Method: Composition-based stats.
 Identities = 40/316 (12%), Positives = 77/316 (24%), Gaps = 50/316 (15%)

Query: 43  KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102
                + +P + Q E +                       SA  G GKT       L  +
Sbjct: 18  IEEMGYDRPTQIQAEAIPQALDG------------RDILASAPTGTGKTAAFVLPALQYL 65

Query: 103 STRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
              P        ++ +  +         AE ++ L+     + F +     +        
Sbjct: 66  QDFPRRKPGPARVLILTPTRELAMQV--AEQARALAKHTKLNIFTITGGVQYQEHADILG 123

Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217
             Q +        +                       +  DEA    D+     +   + 
Sbjct: 124 KTQDV--------VVATPGRLMEYINAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSS 175

Query: 218 LNPNRFWIMTSNTR----RLNGWFYDIFNIPLE-------DWKRYQIDTRTVEGIDSGFH 266
               R      +       + G+  D+   P E         ++                
Sbjct: 176 ECRWRKQTHLYSATLEGKGVEGFTADLLKDPAEIDAEPSRRERKKIAQWYHRADDMQHKF 235

Query: 267 EGIISRYGLDSDVARI-----EILGQFPQQEVNNFIPHNYI--EEAMSRE-----AIDDL 314
           E +       +D   +     E LG+   Q     +P  +I  E    R         D 
Sbjct: 236 ELLKHIITEQADRTIVFLKTRERLGELRAQLEAAQVPCAWIQGEMPQDRRNNAIARFRDG 295

Query: 315 YAPLIMGCDIAGEGGD 330
              +++  D+A  G D
Sbjct: 296 TVNVLLATDVAARGID 311


>gi|315656930|ref|ZP_07909817.1| SNF2 domain protein [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|315492885|gb|EFU82489.1| SNF2 domain protein [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 458

 Score = 43.0 bits (99), Expect = 0.079,   Method: Composition-based stats.
 Identities = 39/292 (13%), Positives = 81/292 (27%), Gaps = 43/292 (14%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG--M 108
           PH +Q    E +  H  +            AI  G G+GK+ +     +W +        
Sbjct: 5   PHNYQSTATEFIIDHDEA------------AILLGMGLGKSVIT-LTAIWQLMLDYFTIS 51

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            ++ +A      ++T  AE+ KW  +        + + +   +      +   +  ++  
Sbjct: 52  RVLVVAP-LRVARDTWPAEIRKWDHLDGLTVAVAVGTKADRLAALAKSAIVTIINRENIP 110

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
           + +                 +     V  DE S   +   K            + W+  +
Sbjct: 111 WLVN------------QMGGSWPFDMVVIDELSSFKNHRAKRFTALVKMRPFVKRWVGLT 158

Query: 229 NTRRLNGWFYDIF--------NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280
            T   NG                      RY+      +  +         R G + ++ 
Sbjct: 159 GTPASNGLMDVWAQFRLLDGGERLGRFITRYRERWFVPDKRNGMQVFTYKPRAGAEDEIY 218

Query: 281 RI-------EILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
            +              Q           + E   R+  + L A L++  D A
Sbjct: 219 GVIGDMTLSMRTTDHLQLPELTVTTMPVVLEPKERKVYEQLKADLVLDLDGA 270


>gi|241760032|ref|ZP_04758130.1| CRISPR-associated helicase Cas3 domain protein [Neisseria
           flavescens SK114]
 gi|241319486|gb|EER55916.1| CRISPR-associated helicase Cas3 domain protein [Neisseria
           flavescens SK114]
          Length = 762

 Score = 43.0 bits (99), Expect = 0.079,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 47/175 (26%), Gaps = 14/175 (8%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
             G GKT  +    L          +I +    + ++    AE  K    L  +   E  
Sbjct: 268 PTGGGKTFTSMAFALEHAKRHDMRRVIYVIPFTSIIEQNA-AEFRKAFGELGEQAVLEHH 326

Query: 145 SLSLHPS-GWYAELLEQSMGIDSKHYTITCRTYS-------EERPDTFVGPHNTHGMAVF 196
           S          A   +  +  ++    I   T          +R       HN  G  + 
Sbjct: 327 STFDDGKLQNEATKDKLRLASENWDAPIVVTTAVQFFESLFADRSSRCRKLHNIAGSVII 386

Query: 197 NDEASGTPDI----INKSILGFFTELNPNRFWIMTSNTR-RLNGWFYDIFNIPLE 246
            DEA   P      I ++I         +      +    +    FY  F    E
Sbjct: 387 LDEAQMLPLNLLLPIMQAIKELAQNYRCSVVMCTATQPAVQAENGFYRGFENVRE 441


>gi|149912233|ref|ZP_01900811.1| ATP-dependent RNA helicase [Moritella sp. PE36]
 gi|149804692|gb|EDM64744.1| ATP-dependent RNA helicase [Moritella sp. PE36]
          Length = 421

 Score = 43.0 bits (99), Expect = 0.079,   Method: Composition-based stats.
 Identities = 30/294 (10%), Positives = 65/294 (22%), Gaps = 39/294 (13%)

Query: 66  CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMSIICIANSETQL 120
               V  +         SA  G GKT       +  +   P        ++ +  +    
Sbjct: 27  IQQQVLPTAMEGRDILASAPTGTGKTLAFLLPAIQHLLDFPRRELGPGRVLILTPTRELA 86

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
                            +         +       +    +  + +    +         
Sbjct: 87  SQVFQQ----------AKMLAAYTDHKVSMVTGGVDYALHAEVLKNNLDIVIATPGRLLE 136

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR---RLNGWF 237
                         +  DEA    D+     +   T     R   M  +     R    F
Sbjct: 137 YIRRDAFECAAIEVLILDEADRMLDMGFYDDVKRITNEMTRRQQTMLFSATLEGRGIDRF 196

Query: 238 YD-------IFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR-------IE 283
            +        F       ++ +I        +    + ++  +  D    R        E
Sbjct: 197 AEELLNEPVEFTANPSRREKAKIHQFMHHVDNHAHKQALLVHWLRDESTTRSIVFVKTRE 256

Query: 284 ILGQFPQQEVNNFIP-----HNYIEEAMSREAIDDLYA--PLIMGCDIAGEGGD 330
            L +      +  IP         +   +R           +++  D+A  G D
Sbjct: 257 RLAELVSYLQSQDIPCAYLRGEMDQAKRTRSLNQFKNDKVKVLIATDVAARGID 310


>gi|332969227|gb|EGK08257.1| DNA/RNA helicase [Desmospora sp. 8437]
          Length = 788

 Score = 43.0 bits (99), Expect = 0.080,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 56/185 (30%), Gaps = 34/185 (18%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           PH  Q E + ++D       +       +  +    G+GKT ++A    +         I
Sbjct: 199 PHEIQREALRSLDATMEEGYD-------RAMVVMATGLGKTYMSA----FFADQMKFGKI 247

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + IA+ E  L+                    E   L ++ S             D++   
Sbjct: 248 LFIAHREEILRQ------------------AEATFLGVNSSWRTGFFNGSRKERDAEVLF 289

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
            +  T S                 +  DE         + ++G F   +P     MT+  
Sbjct: 290 ASIHTLSMLHH--LSSFRPDEFDLIIVDEFHHAAAKSYRRVIGHF---HPRFLLGMTATP 344

Query: 231 RRLNG 235
            RL+G
Sbjct: 345 DRLDG 349


>gi|90961988|ref|YP_535904.1| DNA/RNA helicase [Lactobacillus salivarius UCC118]
 gi|90821182|gb|ABD99821.1| DNA/RNA helicase, DEAD/DEAH box family [Lactobacillus salivarius
           UCC118]
          Length = 986

 Score = 43.0 bits (99), Expect = 0.081,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 62/195 (31%), Gaps = 31/195 (15%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           +        +P++ Q E ++ +                K  I +  G GKT L A  +  
Sbjct: 210 EDNSNYSIIKPNKMQKEALKNL-------QKLRLLRETKGLIISATGTGKTYLAALDV-- 260

Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
                     + +A+ E  LK +L      +  +L          LS +           
Sbjct: 261 --KNYNPKRFLFVAHREQILKKSL----DSFHKVLGGDKKTNYGILSGNAK--------- 305

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220
               D+K+   T +T S+   +            +  DEA      I   +L +FT   P
Sbjct: 306 --NTDAKYLFATVQTLSK--AENLNQFKRDEFDYILIDEAHHVGSKIYGKLLDYFT---P 358

Query: 221 NRFWIMTSNTRRLNG 235
           +    MT+   R + 
Sbjct: 359 DFLLGMTATPERSDD 373


>gi|330828264|ref|YP_004391216.1| ATP-dependent RNA helicase SrmB [Aeromonas veronii B565]
 gi|328803400|gb|AEB48599.1| ATP-dependent RNA helicase SrmB [Aeromonas veronii B565]
          Length = 407

 Score = 43.0 bits (99), Expect = 0.082,   Method: Composition-based stats.
 Identities = 40/333 (12%), Positives = 77/333 (23%), Gaps = 53/333 (15%)

Query: 27  SFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR 86
           SF +F     P   +      F++P   Q   +E                      SA  
Sbjct: 4   SFDDF--DLHPALNRALAEMGFTRPTTIQQMVLE------------PALDGRDILASAPT 49

Query: 87  GIGKTTLNAWMMLWLISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           G GKT       L  +   P        ++ +  +                     +   
Sbjct: 50  GTGKTASFLLPALQHLLDFPRRKPGPCRMLILTPTRELALQVTAH----------AKALA 99

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
              +LS+          EQ   +      +                 +     +  DEA 
Sbjct: 100 AHTNLSIETIIGGVSHEEQLPALTKTTDIVVATPGRLLEYIEKEEFESHDIEVLVLDEAD 159

Query: 202 -GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
                   K +     E    +  ++ S T    G       I  +  + +    R+   
Sbjct: 160 RMLDMGFIKDVNRIVAEARYRKHTMLFSATLEGAGLEKFANEILKDPVELHAEPPRSERR 219

Query: 261 IDSGFH--------------------EGIISRYGLDSDVARIEILGQFPQQE-VNNFIPH 299
             + +                     E   +   + +     E+ GQ         +I  
Sbjct: 220 PITQWIHLADDAAHKLALLTHILKDPETQKAIIFVKTRERLAELSGQLQAAGISCAWIRG 279

Query: 300 NYIEEAMSREAI--DDLYAPLIMGCDIAGEGGD 330
              +           +   P ++  D+A  G D
Sbjct: 280 EMEQSKRIESIRKFHEGEVPFLIATDVAARGID 312


>gi|159123459|gb|EDP48578.1| RNA/DNA helicase, putative [Aspergillus fumigatus A1163]
          Length = 648

 Score = 43.0 bits (99), Expect = 0.082,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 45/186 (24%), Gaps = 14/186 (7%)

Query: 32  VMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT 91
           V+       K  P      P     E +      C +    +  T     I    G GKT
Sbjct: 352 VLYPLLVENKSPPEYLPLGPAYDFREDLNE----CQNRAVAAALTSRLSCIWGPPGTGKT 407

Query: 92  TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLH-- 149
                ++  L+  RP   I+  A +   + N L   +    S              +   
Sbjct: 408 QTVVAILQELLQRRPEERILVTAPTHNAVDNILKRYLCVAGSTGAIPLRVSTNIRKVSSD 467

Query: 150 -PSGWYAELLEQSMGIDSKHYTITCRTYSEER-------PDTFVGPHNTHGMAVFNDEAS 201
                   +  +    D            + R               N     V  DE+S
Sbjct: 468 LMQYACDAMDRREFNFDPAARRRALERIQQSRLIFTTCAGAGLGLLRNEQFHTVVIDESS 527

Query: 202 GTPDII 207
              + +
Sbjct: 528 QQTEPM 533


>gi|257462962|ref|ZP_05627366.1| PhoH family protein [Fusobacterium sp. D12]
 gi|317060579|ref|ZP_07925064.1| PhoH family protein [Fusobacterium sp. D12]
 gi|313686255|gb|EFS23090.1| PhoH family protein [Fusobacterium sp. D12]
          Length = 435

 Score = 43.0 bits (99), Expect = 0.083,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 44/166 (26%), Gaps = 21/166 (12%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTR-PGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
             +  G G GKT L     L  +  R     I          K+            L + 
Sbjct: 245 VTLVGGAGTGKTLLAIAAALEQVVERKKYKKIFIARPIIPMGKD------------LGYL 292

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT---YSEERPDTFVGPHNTHG--M 193
              E + L       +  +   S     K      +        + +             
Sbjct: 293 PGSEKEKLKPWMQPIFDNIEFLSNSRGDKTGEKVVQGLESMGLMKIEPLTYIRGRSIPAG 352

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
            +  DEA     +  K+I    T +  N   + T +  +++  + D
Sbjct: 353 FIVIDEAQNLTPLEIKTI---VTRVGENTKIVFTGDPAQIDNPYLD 395


>gi|194750630|ref|XP_001957633.1| GF10505 [Drosophila ananassae]
 gi|190624915|gb|EDV40439.1| GF10505 [Drosophila ananassae]
          Length = 683

 Score = 43.0 bits (99), Expect = 0.083,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 46/157 (29%), Gaps = 12/157 (7%)

Query: 60  EAVDVHCHSNVNNSNPTIFK-CAISAGRGIGKTTLNAWMMLWLISTRPGMS-----IICI 113
             V        +   P   +   +SA  G GKT   A  ++ L++ R         ++ +
Sbjct: 166 REVIPWILEAQSKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLANRVECKIRALVVLPV 225

Query: 114 ANSETQLKNTLWAEVSK-WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           A    Q+   + A  +K  L +       +++         Y                +T
Sbjct: 226 AELALQVYQVISALCNKTELEVCLLSKQHKLEDEQEKLVELYKGKY-----YSKVDIVVT 280

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209
                 +      G    +   +  DEA    D + +
Sbjct: 281 TPGRLVDHLHATKGFCLKNLKFLIIDEADRIMDAVFQ 317


>gi|190149588|ref|YP_001968113.1| ATP-dependent helicase HepA [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307262908|ref|ZP_07544532.1| RNA polymerase-associated protein rapA [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|254789670|sp|B3H0F9|RAPA_ACTP7 RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|189914719|gb|ACE60971.1| ATP-dependent helicase HepA [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306871813|gb|EFN03533.1| RNA polymerase-associated protein rapA [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 969

 Score = 43.0 bits (99), Expect = 0.083,   Method: Composition-based stats.
 Identities = 29/261 (11%), Positives = 64/261 (24%), Gaps = 19/261 (7%)

Query: 33  MRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTI-FKCAISAGRGIGKT 91
                +         F  P R       ++  H           +  +  ++   G+GKT
Sbjct: 123 RFALRYRALQHQQAQFQSPLRGMRGIRASLIPHQLHIAKEVGQRVAPRVLLADEVGLGKT 182

Query: 92  TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151
                ++   + +     ++ +     Q +   W  V            F+ +  S    
Sbjct: 183 IEAGMILQQQLFSGRVERVLVLVPESLQHQ---W-LVEMLRRFNLKFSLFDEERCSDFDK 238

Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211
                        DS+   I    + E  P+       +H   +  DEA           
Sbjct: 239 ADEDGNDVSENPFDSEALVIASIDWLESSPNRAKQVLASHWDMLIVDEAHHLA---WSED 295

Query: 212 LGFF-------TELNPNRFWIMTSNTR--RLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
                               ++T+          F  +  +  + +  Y   +   E  D
Sbjct: 296 EPSVGYQFVERLSKQTPAVLLLTATPEQLGQESHFARLALLDADRFYDYH--SFIAEQKD 353

Query: 263 SGFHEGIISRYGLDSDVARIE 283
                  ++    D  ++  E
Sbjct: 354 YKPVADAVATLLNDKPLSHDE 374


>gi|239827402|ref|YP_002950026.1| type III restriction protein res subunit [Geobacillus sp. WCH70]
 gi|239807695|gb|ACS24760.1| type III restriction protein res subunit [Geobacillus sp. WCH70]
          Length = 813

 Score = 43.0 bits (99), Expect = 0.083,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 67/225 (29%), Gaps = 40/225 (17%)

Query: 11  LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70
            E EL   L  AE  ++ ++  + + P            +P   Q+E +E ++       
Sbjct: 187 EEVELMLPLDKAETEINERDHDVIYDP----ATVTYETIRPRFAQVEALERLEATYEEGY 242

Query: 71  NNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK 130
           +       K  +    G+GKT L A         R    ++ IA+ E  L+         
Sbjct: 243 D-------KAMVVMATGLGKTYLAA------FFARRFQKVLFIAHREEILRQ-------- 281

Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
                      +     + P+  +          D+     +  T S ++          
Sbjct: 282 ----------AKRSFQRVIPNKTFGIYDRNKKDKDADIIFASIFTLSMKKH--LKAFSKD 329

Query: 191 HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
               +  DE         + +L +F    P     +T+   R + 
Sbjct: 330 AFDLIIIDEFHHAAARSYQRVLDYF---EPKFLLGITATPDRNDN 371


>gi|260063417|ref|YP_003196497.1| terminase large subunit [Robiginitalea biformata HTCC2501]
 gi|88782861|gb|EAR14035.1| terminase large subunit [Robiginitalea biformata HTCC2501]
          Length = 481

 Score = 43.0 bits (99), Expect = 0.083,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 55/205 (26%), Gaps = 32/205 (15%)

Query: 90  KTTLNAWMMLWLISTR---PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           KT      ++WL +      G +I     +  + K TL+ +  + L              
Sbjct: 78  KTWSGIDFIIWLATDHHKEDGCTINIYRETYNEFKTTLYDDFKRRL------------DD 125

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
              P+ ++     +S  I                     G H       F +E       
Sbjct: 126 FDLPNPFHDAKEVKSFKIGKSRIFFLG-----------DGKHGGGCDYAFFNEIMMQRRE 174

Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFH 266
           +   +           FW    N    + W +D   +P  D    +   +    I     
Sbjct: 175 VFDQVEMRC-----RIFWWCDYNPSFTDHWVFDSV-VPRSDTAFLRTTFKDNPFISPSEL 228

Query: 267 EGIISRYGLDSDVARIEILGQFPQQ 291
             I+S    +    ++   G F + 
Sbjct: 229 NKILSYEPWEPGTYQVTEEGVFYKG 253


>gi|157363070|ref|YP_001469837.1| CRISPR-associated helicase Cas3 [Thermotoga lettingae TMO]
 gi|157313674|gb|ABV32773.1| CRISPR-associated helicase Cas3 [Thermotoga lettingae TMO]
          Length = 744

 Score = 43.0 bits (99), Expect = 0.083,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 58/234 (24%), Gaps = 15/234 (6%)

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI--ICIANS 116
           +         N           +I+A  G+GKT   A + + L  +   + +  +   N 
Sbjct: 231 LRKEFHIDLDNSLKYLDDSKIYSITAPTGLGKT--LANLKVALSLSDESLIVYALPFINI 288

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
             Q   T    +            +   +   +    Y E   Q + I+S H  I   T+
Sbjct: 289 IDQTVETFQKIMQDTEFDASTILPYHHLANPKYEEDIYGEKAIQKVLIESWHSQIVVTTF 348

Query: 177 SEERPDTFVGPH--NTHGMA---VFNDEASGTPDIINK---SILGFFTELNPNRFWIMTS 228
                           + +    +  DE    P         IL   +E      +   +
Sbjct: 349 VGLFESLLTSKRVPFFYKLLNATIILDEVQSIPHKYWNPLADILSCLSEFGTKIIFSTAT 408

Query: 229 NT---RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279
                 +        +N  L   + +               E        +  +
Sbjct: 409 QPMIITKTRELINKNYNSKLNRTRIHYCGEIDYPSFMKQVEEEANKCLEKNQRL 462


>gi|120554827|ref|YP_959178.1| type III restriction enzyme, res subunit [Marinobacter aquaeolei
           VT8]
 gi|120324676|gb|ABM18991.1| type III restriction enzyme, res subunit [Marinobacter aquaeolei
           VT8]
          Length = 1043

 Score = 43.0 bits (99), Expect = 0.083,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 56/186 (30%), Gaps = 30/186 (16%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P   Q + +E +       V       F+  + A  G GKT ++A+     +  +P    
Sbjct: 320 PFPHQKDILEQLS------VERDVHQRFRNLVVAATGTGKTLISAFDFQRFLKEKPNAHF 373

Query: 111 ICIANSETQLKNTLWAEVSK-WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           + +A+ E  L+     E  +  L        +    L  H    +  +   +  +D    
Sbjct: 374 LFVAHREEILRQA--REAYRGVLRNNAFGELWVGGQLPEHYRQLFVSIQTLNNQLDQLKL 431

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
           T                    +   +  DE         +++       +P     +T+ 
Sbjct: 432 T------------------EDYYDYIVIDEVHHIAASSYRAV---LEHFSPEILLGLTAT 470

Query: 230 TRRLNG 235
             R +G
Sbjct: 471 PERHDG 476


>gi|325982111|ref|YP_004294513.1| metal dependent phosphohydrolase [Nitrosomonas sp. AL212]
 gi|325531630|gb|ADZ26351.1| metal dependent phosphohydrolase [Nitrosomonas sp. AL212]
          Length = 754

 Score = 43.0 bits (99), Expect = 0.084,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 53/181 (29%), Gaps = 19/181 (10%)

Query: 48  FSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107
            +QP +   +  + +  H           +F   +    G GKT  +    L        
Sbjct: 226 ATQPPKSINQLRQRILDHSRKQAELRLG-LFSLTV--PTGGGKTYTSMAFALDHAIAHQL 282

Query: 108 MSIICIANSETQLKN--TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
             II +    + ++    ++ E    L+     H        L            ++ + 
Sbjct: 283 RRIIYVIPFTSIIEQNAKVFREAFDDLADAVVEHHSAFDDTKL-----PNNDARDTLKLA 337

Query: 166 SKHYTI---------TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT 216
            + +              +   +RP      HN  G  +  DEA   P  + + I+   +
Sbjct: 338 MESWNAPVIVTTAVQFFESLFGDRPSQCRKLHNIAGSVIILDEAQTLPLKLLRPIMAAIS 397

Query: 217 E 217
           E
Sbjct: 398 E 398


>gi|238801660|ref|YP_002922716.1| gp44 [Burkholderia phage BcepIL02]
 gi|237688035|gb|ACR15037.1| gp44 [Burkholderia phage BcepIL02]
          Length = 531

 Score = 43.0 bits (99), Expect = 0.084,   Method: Composition-based stats.
 Identities = 33/326 (10%), Positives = 63/326 (19%), Gaps = 80/326 (24%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  I   R +G TTL   + L             IA +    +                +
Sbjct: 72  RNVILKARQLGFTTLICIIWLDHALFNANSRCGIIAQNRETAEAIF-----------RDK 120

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
             F   +L                 +   H   + R  +  R  T    H          
Sbjct: 121 VKFAYDNLPEALRDAMPLANCTQSEMLFGHNNSSIRVATSVRGGTIHRLH--------VS 172

Query: 199 EASGT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL--------- 245
           E        P    + + G    +  +   ++ S      G FY+I              
Sbjct: 173 EFGKICAEAPLKAKEIVTGSIPAVPKSGILVIESTAEGREGEFYEITMRAEATAQQGRPL 232

Query: 246 --EDWKRYQIDTRTVEGIDSG--------------------------------FHEGIIS 271
              D++ +                                             +     +
Sbjct: 233 TPRDYRFHFYPWWQAPEYRMDAAGVVITEKDRQYFETIEAKHGITIDAEQRAWYVATRDA 292

Query: 272 RYGLDSDVARIEI----LGQFPQQEVNNFIPHNYIEEAMSREAIDD----LYAPLIMGCD 323
            +  + +    E        F       +          +             P     D
Sbjct: 293 DFSGNEERMWQEYPSTPEEPFKVSTEGTYYAQQLATARKNGRFKQSLPVLTNVPCFTFWD 352

Query: 324 IAGEGGDKTVVVFRRGNIIEHIFDWS 349
           I     D T +   +        +W 
Sbjct: 353 IGN--SDGTAIWVLQ----RIEHEWR 372


>gi|50312271|ref|XP_456167.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49645303|emb|CAG98875.1| KLLA0F24398p [Kluyveromyces lactis]
          Length = 1055

 Score = 43.0 bits (99), Expect = 0.084,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 40/125 (32%), Gaps = 10/125 (8%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            A++AGRG GK+     + +    +    +I   + S   LK  L+  + K    L ++ 
Sbjct: 279 VALTAGRGRGKSAAL-GISIAAAVSHGYSNIFVTSPSPENLKT-LFEFIFKGFDALGYQE 336

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +   +      +   ++   +  + +                           V  DE
Sbjct: 337 HIDYDIIQSTNPSFNKAIVRVDIKREHRQTIQYIIPNDSHVLGQAE--------LVVIDE 388

Query: 200 ASGTP 204
           A+  P
Sbjct: 389 AAAIP 393


>gi|315173781|gb|EFU17798.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
           TX1346]
          Length = 439

 Score = 42.6 bits (98), Expect = 0.085,   Method: Composition-based stats.
 Identities = 30/253 (11%), Positives = 72/253 (28%), Gaps = 23/253 (9%)

Query: 94  NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
            A +++ LI  R  ++ + I   +  ++ +++ ++   +       +F++    +     
Sbjct: 49  VAHIIVQLI-MRYPVNAVAIRYVDNTIELSIFEQIKWAIEEQGVSKYFKVNKSPMK---- 103

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSIL 212
                   +    +   I  R          +          + +E A    +   K+I 
Sbjct: 104 --------ITYKPRGNYIVFRGAQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTIT 155

Query: 213 GFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDWKRYQIDTRTVEGIDSGF 265
                          +  + N   R   W    +      E+   +    +    I   F
Sbjct: 156 NSLLRGELADGLFYKFFYSYNPPKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAF 215

Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
            E + +    +   A  E  G+     V  F     I+  +  + +   +  +  G D  
Sbjct: 216 IEEVNATRAKNPKRAEWEYDGKAIGSGVVPFDNLRVIKGCI-TDEMVANFDNIRNGLDF- 273

Query: 326 GEGGDKTVVVFRR 338
           G   D    V   
Sbjct: 274 GYATDPLAFVRWH 286


>gi|258544092|ref|ZP_05704326.1| probable terminase (atpase subunit) related protein
           [Cardiobacterium hominis ATCC 15826]
 gi|258520720|gb|EEV89579.1| probable terminase (atpase subunit) related protein
           [Cardiobacterium hominis ATCC 15826]
          Length = 562

 Score = 42.6 bits (98), Expect = 0.085,   Method: Composition-based stats.
 Identities = 37/323 (11%), Positives = 82/323 (25%), Gaps = 35/323 (10%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
             F E +  H  +   +S     +  + + R IG T   A   L       G + I I+ 
Sbjct: 110 RAFRERMYPHQMAWYEHSKKYEMRQYVKS-RQIGATYYFAQEALLTALET-GKNQIFISA 167

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
           S++Q        ++    +L  +   E   LS   + ++      +    S    I    
Sbjct: 168 SKSQAHIFRSNIIAFVDEVLGVQLKGEHIKLSPGTTLYFLGTNSNTAQSYSGDLYIDEYF 227

Query: 176 YSEE-----RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
           +  +          +  H       +    S           G        +   +    
Sbjct: 228 WIPQFKKIQHVAAGMTVH-DDRRITYFSTPSTVTHEAYPLWTGAEFNKGRPKSEHI---- 282

Query: 231 RRLNGWFYDIFNIPL---EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
                  +          + + R  I                  R           ++ Q
Sbjct: 283 --DLDVSHKALKDGRLCEDGYFRQVITIEDAINSGFDRVTMEKLRIKFPPGQFENLLMCQ 340

Query: 288 FPQQEVNNFIPHNYIEEAM------SREA-----IDDLYAPLIMGCDIAGEGGDKT--VV 334
           F   + ++      ++  M       ++           AP+ +G D +    D +  V+
Sbjct: 341 FVN-DTDSIFKMAELQRCMVDAWTLWKDYTPLAPRPLDDAPVWIGYDPSRSQDDASLVVI 399

Query: 335 V--FRRGNIIEHIFD--WSAKLI 353
                 G +   +    ++    
Sbjct: 400 APPRVEGGVFRIVDKQSFNGLDF 422


>gi|213511024|ref|NP_001133236.1| ATP-dependent RNA helicase DDX51 [Salmo salar]
 gi|209147204|gb|ACI32879.1| ATP-dependent RNA helicase DDX51 [Salmo salar]
          Length = 678

 Score = 42.6 bits (98), Expect = 0.085,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 44/166 (26%), Gaps = 5/166 (3%)

Query: 55  QLEFMEAVDVHCHSN--VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
           Q E + A+         +           +SA  G GKT      ++  +  R    +  
Sbjct: 241 QAEVIPAILESVSHGLLIGRGGYKPRDVCVSAPTGSGKTLAFVIPVIQALIGRVVCKVRV 300

Query: 113 IA--NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           +A   ++   +       S +      +        S              +        
Sbjct: 301 LAVLPTKELAQQVC-KVFSSYAEGNSLKVVMLAGQKSFAAEQALLSENRGGISHSLADIV 359

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT 216
           +       +  +   G    H   +  DEA    D +++S L   T
Sbjct: 360 VATPGRLVDHINKNDGFSLEHLRFLIIDEADRMIDSMHQSWLSQVT 405


>gi|307564873|ref|ZP_07627398.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
 gi|307346409|gb|EFN91721.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
          Length = 697

 Score = 42.6 bits (98), Expect = 0.085,   Method: Composition-based stats.
 Identities = 33/277 (11%), Positives = 77/277 (27%), Gaps = 24/277 (8%)

Query: 7   TDQKLEQELHEMLMHAECVLSFKNFV---MRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63
             ++   ++ E  +   C   F  +    +     G     L   ++P   Q +F+E ++
Sbjct: 81  YSEEDRLKVIEQFVRLRCRYDFAFWAAMYVYIKNKGGGDDVLFRLTRP---QRKFVERLE 137

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-GMSIICIANS---ETQ 119
                          +  +   R  G +T +   M WL      G++ + IA+      +
Sbjct: 138 A------LRKANKPIRIVLLKARQWGGSTTSQLYMAWLQLIHKVGLNSLIIAHQGAGSDE 191

Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS-KHYTITCRTYSE 178
           +K+     +  +   + ++             G         +   + K    T      
Sbjct: 192 IKDMFDRMIKAYPISMLYKLGETYNENESKLVGVGHSGSIHRVPQRNCKIKIGTAERPDS 251

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
            R   +   H +     +       P+ I +S              I+  +T    G F+
Sbjct: 252 CRGGDYNLVHLSEVGL-WKTTDGKKPEDIVRSACSGVLL--KPYTMIVYESTANGTGNFF 308

Query: 239 DIFNIPLED----WKRYQIDTRTVEGIDSGFHEGIIS 271
                  +     ++   +    +E     F      
Sbjct: 309 QREYDAAKRGTSQFEAMFVSWFDIEQYSLPFDNDDEK 345


>gi|257437625|ref|ZP_05613380.1| putative helicase [Faecalibacterium prausnitzii A2-165]
 gi|257199932|gb|EEU98216.1| putative helicase [Faecalibacterium prausnitzii A2-165]
          Length = 1043

 Score = 42.6 bits (98), Expect = 0.085,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 53/187 (28%), Gaps = 30/187 (16%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP--GM 108
           P+ +Q E ++ +      +   +     +  + A  G GKT ++A          P    
Sbjct: 319 PYSYQQEILDRL------DAERTVRGYNRNLVVAATGTGKTVISALDYKRFCRQHPGQPC 372

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            ++ +A+ E  LK +L                      ++     + EL   S   DS  
Sbjct: 373 RLLFVAHREEILKQSL------------------YTFRAVLKDANFGELYVGSHRADSID 414

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
           +          +              +  DE         +          P     +T+
Sbjct: 415 HLFVSIQTFNSQELAAKTA-ADFYDYIVVDEFHHAAAPTYQ---KPLEYYQPKILLGLTA 470

Query: 229 NTRRLNG 235
              R++G
Sbjct: 471 TPERMDG 477


>gi|110680702|ref|YP_683709.1| ATP-dependent DNA helicase [Roseobacter denitrificans OCh 114]
 gi|109456818|gb|ABG33023.1| ATP-dependent DNA helicase, UvrD/REP family domain [Roseobacter
            denitrificans OCh 114]
          Length = 1770

 Score = 42.6 bits (98), Expect = 0.085,   Method: Composition-based stats.
 Identities = 25/245 (10%), Positives = 62/245 (25%), Gaps = 17/245 (6%)

Query: 31   FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
            F+ R+ P   K + L   +    W  + +E +      ++   +       + AG G GK
Sbjct: 1130 FMKRWMP--GKARELRRQTTSASW-KKIVEDLGNKTQESIVADDRASTNVLVLAGPGSGK 1186

Query: 91   TTLNAWMMLWLI-STRPGMS-IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
            T +    + +L+   R     I+ +A +            +               +L++
Sbjct: 1187 TRVLVHRVAYLLRIKREDPRGILVLAYNRHAASEIRTRLAALVGEDARGVTICTCHALAM 1246

Query: 149  HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA-----VFNDEASGT 203
               G      +       +  T      + +             +      +  DE    
Sbjct: 1247 RLVGASFSGFDAQNADFDRIVTDAAGLLNGDGLSKSEAEAQRDSLLDGYRWILVDEYQDI 1306

Query: 204  PDIINKSILG----FFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
                   I         + +              +   Y      ++  ++++ D     
Sbjct: 1307 GPEEYALISAVAGRSLEDADLKLSLFAVG---DDDQNIYAFTGASVDFIRQFEADYHARP 1363

Query: 260  GIDSG 264
                 
Sbjct: 1364 SFLIE 1368


>gi|311977923|ref|YP_003987043.1| putative DNA helicase [Acanthamoeba polyphaga mimivirus]
 gi|82000106|sp|Q5UQ92|YR530_MIMIV RecName: Full=Uncharacterized protein R530
 gi|55417144|gb|AAV50794.1| putative DNA helicase [Acanthamoeba polyphaga mimivirus]
 gi|308204889|gb|ADO18690.1| putative DNA helicase [Acanthamoeba polyphaga mimivirus]
          Length = 494

 Score = 42.6 bits (98), Expect = 0.085,   Method: Composition-based stats.
 Identities = 15/145 (10%), Positives = 37/145 (25%), Gaps = 14/145 (9%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKT   + +    +      +I   A +   LK      +  ++    +    ++ + 
Sbjct: 32  GSGKTYTISKITKKFLVDELIENIYYCAPTHKALK-----VLESYIKSNINASDKDLSNK 86

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
               +       +  +  ++          S           N     V  DE S     
Sbjct: 87  IKFMTIHKLLEFKPIIQTETGSKVFKSTKES-------KFLKNISKNLVVIDECSMISQE 139

Query: 207 INKSILGFFTELNPNRFWIMTSNTR 231
           +   +  +          I   + +
Sbjct: 140 MVDELNKYINLY--PIKIIYMGDPK 162


>gi|242019028|ref|XP_002429968.1| U520, putative [Pediculus humanus corporis]
 gi|212515023|gb|EEB17230.1| U520, putative [Pediculus humanus corporis]
          Length = 2114

 Score = 42.6 bits (98), Expect = 0.086,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 50/222 (22%), Gaps = 32/222 (14%)

Query: 47   HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
             F Q +  Q +   AV                   I A  G GKTT+  + +L L+S  P
Sbjct: 1317 KFPQFNPIQTQVFNAVYNTDD-----------NIFIGAPTGSGKTTIAEFAVLRLLSQNP 1365

Query: 107  GMSIICIANSETQLKNTL--WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
                + +   ++  +     W ++   +  +         S  L                
Sbjct: 1366 DGRCVYLVAKDSLAELIFAEWQQIFNCILNVKVVLLTGETSTDLKLLA------------ 1413

Query: 165  DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN----- 219
              +    T   +           +  +      DE           +    + +      
Sbjct: 1414 KGQIIITTAEKWDVLSRRWKQRKNVQNIQLFIVDELQLIGGEDGPVLEVVCSRMRYISSQ 1473

Query: 220  --PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
                   +  S +                    +    R V 
Sbjct: 1474 LEKQIRIVALSTSLADARDVSQWLGCNSNATFNFHPSVRPVP 1515


>gi|145351283|ref|XP_001420012.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580245|gb|ABO98305.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 521

 Score = 42.6 bits (98), Expect = 0.086,   Method: Composition-based stats.
 Identities = 21/215 (9%), Positives = 59/215 (27%), Gaps = 18/215 (8%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
           + +    +    +V +     +   +    G GKT      +  ++   P   ++  A S
Sbjct: 12  KVLNDEQLRVVEDVVSGAGKQYPYIVWGPPGTGKTLTIVECVAHVLEMFPHARVLLAAPS 71

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY------- 169
                + L + ++K L+    +    +  +   P  + +         D   +       
Sbjct: 72  AF-AADILCSRLAKRLTPFKKKMIVRVNDVRRTPESYASVPFHFFKRPDPLKHLKHARVV 130

Query: 170 ---TITCRTYSEERPDTFVGPHNTHGMAVFNDEASG--TPDIINKSILGFFTELNPNRFW 224
                +     +          N     +F DEA+    P+ +        +  +     
Sbjct: 131 VCTCTSAALLRKLPMPVDSVVENWTPTHIFVDEAAQALVPETLI-----PLSLASSETSI 185

Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
           ++  ++++L    +          K          
Sbjct: 186 VLAGDSKQLGPNVHSKEAAQAGLRKSLLEMWMDHS 220


>gi|22296524|ref|NP_680484.1| putative large terminase subunit [Lactobacillus phage A2]
 gi|22217799|emb|CAD43893.1| putative large terminase subunit [Lactobacillus phage A2]
          Length = 563

 Score = 42.6 bits (98), Expect = 0.086,   Method: Composition-based stats.
 Identities = 38/322 (11%), Positives = 84/322 (26%), Gaps = 60/322 (18%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFK---CAISAGRGIGKTTLNAWMMLWLISTRPG-- 107
            +Q   + ++       V+  +  I +     IS  R  GK+ L + ++L+         
Sbjct: 67  PFQKFIIGSIY----GWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPA 122

Query: 108 -MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
               +  A ++ +    ++  V   L  L                          +  D 
Sbjct: 123 NKRQLYTAANDRKQAGIVFGMVKDRLRAL--------------MRKDPGIKRMVKITRDE 168

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS--GTPDIINKSILGFFTELNPNRFW 224
                   T      DT              DE +   T D+I     G     +   F 
Sbjct: 169 LVNLDDGSTIRSFSRDTG-LVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFI 227

Query: 225 IMTSNTRRLNGWFYDIFNIPL---------EDWKRYQIDTRTVEGIDSG--FHEG----- 268
           I T+        F   +             E +  +  +   V+ +D    + +      
Sbjct: 228 ISTAGFDMNVPMFQQNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLD 287

Query: 269 ----------------IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
                             +R     +   ++    + Q   ++++  +  + A   +  D
Sbjct: 288 VDTLHSQISDYLTTKLAQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTDKPD 347

Query: 313 DLYAPLIMGCDIAGEGGDKTVV 334
                  +G D+     D   +
Sbjct: 348 IRGQRAWIGIDVGRT-SDLFAI 368


>gi|41615176|ref|NP_963674.1| Hef nuclease [Nanoarchaeum equitans Kin4-M]
 gi|40068900|gb|AAR39235.1| NEQ387 [Nanoarchaeum equitans Kin4-M]
          Length = 667

 Score = 42.6 bits (98), Expect = 0.087,   Method: Composition-based stats.
 Identities = 22/199 (11%), Positives = 54/199 (27%), Gaps = 44/199 (22%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
             G+GKT +   ++ +     P   I+ +A ++          V++ +  L  R + ++ 
Sbjct: 2   PTGLGKTVIALMLIEYFKQKYPDKKILFLAPTK--------PLVNQHVEFL--RKYSDID 51

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
              +          ++    ++     T +T   +  +  +         +  DEA    
Sbjct: 52  PTKIVGISGDIPKEKRVKLYNADVIVATPQTIKNDLANNLIDL--NKFSLIIFDEAHR-- 107

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264
                                   N           +     ++    +      G D  
Sbjct: 108 ---------------------AVGN---------YSYTYIARNFNNRIVGLTASPGSDEE 137

Query: 265 FHEGIISRYGLDSDVARIE 283
             + II    ++    R E
Sbjct: 138 KIKEIIENLKIERIEYRNE 156


>gi|329938003|ref|ZP_08287485.1| hypothetical protein SGM_2977 [Streptomyces griseoaurantiacus M045]
 gi|329302960|gb|EGG46849.1| hypothetical protein SGM_2977 [Streptomyces griseoaurantiacus M045]
          Length = 1589

 Score = 42.6 bits (98), Expect = 0.088,   Method: Composition-based stats.
 Identities = 25/243 (10%), Positives = 51/243 (20%), Gaps = 23/243 (9%)

Query: 44   PLEHFSQPHR------WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97
            P E    P        +Q E +  +            P     ++    G GKT + A  
Sbjct: 1178 PFETIEGPRDFPRLHGYQEELVRNISTLLDRLA----PQRGMLSL--PTGAGKTRVTAEA 1231

Query: 98   MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
            ++  +     +    +          L  +  +    + ++   E               
Sbjct: 1232 VIRWVKRVGDLKGPLL---WIAQTEELCEQAVQSWKFVWNKVGAERPLTISRLWSSNEVG 1288

Query: 158  LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF-- 215
                            +       D +          V  DEA          ILG    
Sbjct: 1289 NVVDHPHL--VVATDAKLQRCLGTDQYAWLR--EPALVIVDEAHTAISKRYTEILGLLGL 1344

Query: 216  -TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYG 274
                       +T+   R      +   +      R   +     G      +       
Sbjct: 1345 TQYETHRHLLGLTATPFRNTN-EDETRRLITRFGNRRLDEGVFPSGDPYRDLQEWGMLAQ 1403

Query: 275  LDS 277
            ++ 
Sbjct: 1404 VEH 1406


>gi|327483588|gb|AEA77995.1| Helicase [Vibrio cholerae LMA3894-4]
          Length = 584

 Score = 42.6 bits (98), Expect = 0.088,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 61/196 (31%), Gaps = 29/196 (14%)

Query: 41  KGKPLEHFS-QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99
           +  P   F   P   Q + +E +       V  S    F+  + A  G GKT ++A+   
Sbjct: 46  EDSPTHFFDISPFPHQSDILEQLA------VERSVHQRFRNLVVAATGTGKTLISAFDFA 99

Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159
             I  +P  + + +A+ E  LK    A     L        +       H    +  +  
Sbjct: 100 RFIKAKPQANFLFVAHREEILKQARAAY-RGVLRNSAFGELWVGGHTPEHYRQLFVSIQT 158

Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
            +  ++  + T+                   +   +  DE         +++       +
Sbjct: 159 LNNQLEQLNLTV------------------DYYDYIVIDEVHHIAATSYRAV---LEHFS 197

Query: 220 PNRFWIMTSNTRRLNG 235
           P     +T+   R +G
Sbjct: 198 PAILLGLTATPERHDG 213


>gi|229523373|ref|ZP_04412780.1| type III restriction enzyme res subunit [Vibrio cholerae TM
           11079-80]
 gi|229339736|gb|EEO04751.1| type III restriction enzyme res subunit [Vibrio cholerae TM
           11079-80]
          Length = 746

 Score = 42.6 bits (98), Expect = 0.088,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 61/196 (31%), Gaps = 29/196 (14%)

Query: 41  KGKPLEHFS-QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99
           +  P   F   P   Q + +E +       V  S    F+  + A  G GKT ++A+   
Sbjct: 9   EDSPTHFFDISPFPHQSDILEQLA------VERSVHQRFRNLVVAATGTGKTLISAFDFA 62

Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159
             I  +P  + + +A+ E  LK    A     L        +       H    +  +  
Sbjct: 63  RFIKAKPQANFLFVAHREEILKQARAAY-RGVLRNSAFGELWVGGHTPEHYRQLFVSIQT 121

Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
            +  ++  + T+                   +   +  DE         +++       +
Sbjct: 122 LNNQLEQLNLTV------------------DYYDYIVIDEVHHIAATSYRAV---LEHFS 160

Query: 220 PNRFWIMTSNTRRLNG 235
           P     +T+   R +G
Sbjct: 161 PAILLGLTATPERHDG 176


>gi|229530065|ref|ZP_04419455.1| helicase [Vibrio cholerae 12129(1)]
 gi|229333839|gb|EEN99325.1| helicase [Vibrio cholerae 12129(1)]
          Length = 1046

 Score = 42.6 bits (98), Expect = 0.088,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 61/196 (31%), Gaps = 29/196 (14%)

Query: 41  KGKPLEHFS-QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99
           +  P   F   P   Q + +E +       V  S    F+  + A  G GKT ++A+   
Sbjct: 309 EDSPTHFFDISPFPHQSDILEQLA------VERSVHQRFRNLVVAATGTGKTLISAFDFA 362

Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159
             I  +P  + + +A+ E  LK    A     L        +       H    +  +  
Sbjct: 363 RFIKAKPQANFLFVAHREEILKQARAAY-RGVLRNSAFGELWVGGHTPEHYRQLFVSIQT 421

Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
            +  ++  + T+                   +   +  DE         +++       +
Sbjct: 422 LNNQLEQLNLTV------------------DYYDYIVIDEVHHIAATSYRAV---LEHFS 460

Query: 220 PNRFWIMTSNTRRLNG 235
           P     +T+   R +G
Sbjct: 461 PAILLGLTATPERHDG 476


>gi|68006105|ref|NP_001018299.1| SNF2 family helicase Ino80 [Schizosaccharomyces pombe 972h-]
 gi|206557976|sp|O14148|INO80_SCHPO RecName: Full=Putative DNA helicase ino80
 gi|159884046|emb|CAB16246.2| SNF2 family helicase Ino80 [Schizosaccharomyces pombe]
          Length = 1604

 Score = 42.6 bits (98), Expect = 0.088,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 57/222 (25%), Gaps = 25/222 (11%)

Query: 53   RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GMS 109
             +QL+ +  +       +N               G+GKT  +  +M +L  T        
Sbjct: 844  EYQLKGLNWLANLYEQGINGILADEM--------GLGKTVQSISVMAYLAETHNIWGPFL 895

Query: 110  IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
            +I  A++          E+++++  L    ++           +      ++M  D    
Sbjct: 896  VIAPASTLHN----WQQEITRFVPKLKCIPYWGSTKDRKILRKF---WCRKNMTYDENSP 948

Query: 170  TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                 T  +          +     +  DEA         S              ++T  
Sbjct: 949  FHVVVTSYQLVVLDAQYFQSVKWQYMILDEAQAIKSSS-SSRWKSLLAFKCRNRLLLTGT 1007

Query: 230  TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271
               +     +++ +                   S +    I 
Sbjct: 1008 P--IQNTMQELWALL----HFIMPSLFDSHNEFSEWFSKDIE 1043


>gi|46135987|ref|XP_389685.1| hypothetical protein FG09509.1 [Gibberella zeae PH-1]
          Length = 1562

 Score = 42.6 bits (98), Expect = 0.088,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 48/154 (31%), Gaps = 3/154 (1%)

Query: 51   PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
            P ++ +   + ++V     +           +    G GKTT  A ++     T  G S+
Sbjct: 1047 PTQYTMSDRDNLNVDQRRAIEKVMSAQDYALVLGMPGTGKTTTIAHII--QALTSQGKSV 1104

Query: 111  ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
            +  +++ T + N L    S  + +L      ++       +      ++    I    + 
Sbjct: 1105 LLTSHTHTAVDNILLKLKSDKIPILRLGAPAKVHPQVQEFATLAGHPMKSFEEIKEAWHG 1164

Query: 171  ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                  +    +     H         DEAS   
Sbjct: 1165 TPIVATTCLGINHP-IFHERTFDYCIVDEASQIT 1197


>gi|225568008|ref|ZP_03777033.1| hypothetical protein CLOHYLEM_04081 [Clostridium hylemonae DSM
           15053]
 gi|225163182|gb|EEG75801.1| hypothetical protein CLOHYLEM_04081 [Clostridium hylemonae DSM
           15053]
          Length = 895

 Score = 42.6 bits (98), Expect = 0.088,   Method: Composition-based stats.
 Identities = 24/199 (12%), Positives = 50/199 (25%), Gaps = 26/199 (13%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q   +   + +   N         K  I A  G GKTTL        +  R G   +
Sbjct: 15  RDYQERVLHHSEAYMSDN---------KVHIVAAPGSGKTTLG-----IELIRRLGNPCL 60

Query: 112 CIANSETQLKNTLWAEVS-----------KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
            ++ S   ++    A +            KW S    +                 +    
Sbjct: 61  ILSPSI-TIRQQWIARLEEGFLTEGEDAEKWFSNDIRKAKPITAITYQALYSSMKQYTGL 119

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220
               + +           +  D +          +  DEA        +++  F   +  
Sbjct: 120 LEDSEEESEEKNTEMVDYKNFDIYEVIRENGIRTLCLDEAHHLRSEWWRALEEFLKNVTD 179

Query: 221 NRFWIMTSNTRRLNGWFYD 239
            +   +T+     +     
Sbjct: 180 VKLVSLTATPPYDSTPAQW 198


>gi|28210383|ref|NP_781327.1| DNA/RNA helicase [Clostridium tetani E88]
 gi|28202820|gb|AAO35264.1| DNA/RNA helicase [Clostridium tetani E88]
          Length = 830

 Score = 42.6 bits (98), Expect = 0.088,   Method: Composition-based stats.
 Identities = 23/190 (12%), Positives = 54/190 (28%), Gaps = 36/190 (18%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
            + +P   Q+E +  +        +       +  + A  GIGKT L A        +  
Sbjct: 216 SYPKPKDAQIEALYKLKKFREEGFD-------RGIVVAATGIGKTYLAA------FDSSK 262

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
              ++ +A+ +  L                ++     + +    +  +     +    D 
Sbjct: 263 YNKVLFVAHRQEIL----------------NQAETSFRIVRKTNNTGFFSGNRKDRNKD- 305

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNRFWI 225
                T +T  +++              +  DE      D     +  F     P     
Sbjct: 306 -VLFATVQTLGQKQYLCDDYFKEDEFDYIIIDEFHHAVADNYQNILDYF----KPKFLLG 360

Query: 226 MTSNTRRLNG 235
           +T+   R++ 
Sbjct: 361 LTATPERMDN 370


>gi|269138982|ref|YP_003295683.1| putative large subunit terminase [Edwardsiella tarda EIB202]
 gi|267984643|gb|ACY84472.1| putative large subunit terminase [Edwardsiella tarda EIB202]
          Length = 237

 Score = 42.6 bits (98), Expect = 0.089,   Method: Composition-based stats.
 Identities = 22/218 (10%), Positives = 53/218 (24%), Gaps = 25/218 (11%)

Query: 54  WQLEFMEAVDVHCHSNVNNSNPTIFKCA---------ISAGRGIGKTTLNAWMMLWLIST 104
           W+L+ +  +       V        +           I   R +G +T     +L     
Sbjct: 24  WRLDNLYQIVDEQGRLVPFRMRPAQRQLFMEMHEKNLILKARQLGFSTAIDLYLLDQALF 83

Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
              +    +A  +        AE+ +    +P  H     +   H    +       +  
Sbjct: 84  SQNVKCGIVAQDKQAA-----AEIFRTKIEVPFDHLPGWLAGCFHAVKRHGGASGGYIEF 138

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
                 +   ++            +           +  P    +   G    +      
Sbjct: 139 AHGSNIMVATSFRSGTVQRLHISEHGKI-------CAKYPAKAKEVRTGTLNAVADGSIV 191

Query: 225 IMTSNTRRLNGWFYDI----FNIPLEDWKRYQIDTRTV 258
            + S    + G FYD+      +    ++ +    R  
Sbjct: 192 FIESTAEGVGGDFYDMSLRAQEMAQSRFRCWIFPIRPS 229


>gi|331270547|ref|YP_004397039.1| DNA helicase [Clostridium botulinum BKT015925]
 gi|329127097|gb|AEB77042.1| DNA helicase, putative [Clostridium botulinum BKT015925]
          Length = 1222

 Score = 42.6 bits (98), Expect = 0.090,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 44/118 (37%), Gaps = 6/118 (5%)

Query: 53  RWQ---LEFMEAV-DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108
           +WQ    + + ++       ++  S    F   +    G GKT   A ++  L++     
Sbjct: 241 KWQDIGKDILYSLPYNKEQLSIGESIAQNFGVVVQGPPGTGKTYSIANLISHLLAHN--K 298

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
            I+  +     L+  +     +  S+  + +  ++Q+LS       + + +  +  + 
Sbjct: 299 RILITSTKYKSLEPLINMIPKEIRSLCINYNENKLQNLSQIYHSVISVIEKIQLNSEK 356


>gi|328793005|ref|XP_625192.3| PREDICTED: activating signal cointegrator 1 complex subunit 3-like
            [Apis mellifera]
          Length = 2076

 Score = 42.6 bits (98), Expect = 0.090,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 45/175 (25%), Gaps = 21/175 (12%)

Query: 45   LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            L  FS  +  Q +    +    +              + A  G GKT      M  +   
Sbjct: 1236 LYKFSHFNPIQTQIFHCLYHTDN-----------NVLLGAPTGSGKTIAAEIAMFRVFKQ 1284

Query: 105  RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
             P   I+ IA  +  ++  +      W      +  FE Q              +  +  
Sbjct: 1285 YPTQKIVYIAPLKALVRERM----KDW------KIRFEEQLGKKVIELTGDVSPDIKVIA 1334

Query: 165  DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
            ++     T   +           +  +   +  DE     +     +    +  N
Sbjct: 1335 NANIIITTPEKWDGISRSWQTRLYVKNVALIIIDEIHLLGEDRGPVLEVIISRTN 1389


>gi|310642916|ref|YP_003947674.1| protein [Paenibacillus polymyxa SC2]
 gi|309247866|gb|ADO57433.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
          Length = 561

 Score = 42.6 bits (98), Expect = 0.090,   Method: Composition-based stats.
 Identities = 23/271 (8%), Positives = 68/271 (25%), Gaps = 40/271 (14%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q  F+  V     +          +  I   R +G +T+   ++ +  S +   +   +A
Sbjct: 60  QRTFVREVFRQIEAGKPV------RIIILKARQMGFSTVTEALIYYFTSLQEAKNAFIVA 113

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI-TC 173
              +   + L+     +   +P      ++ +S   +         ++    +       
Sbjct: 114 -QSSDASSNLYDMFQFYYEKVP----AIIKPMSRKNNAKKLTFENPTIRTADRRMNPGLK 168

Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTP-----DIINKSILGFFTELNPNRFWIMTS 228
              + +  ++ V   +     +   E +  P       +   +     E         T+
Sbjct: 169 SKITVQTAESRVLARSDTIHYLHASEVAFWPAKKKKKHLLSLLAALSKEPGSLGVIESTA 228

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG-----------IDSGFHEGIISRYGLDS 277
           N        +D       D+         +              +  +          + 
Sbjct: 229 NGIEEFKKMWDAAVKGESDFTPLFFAWFEMPDYRKPVPPGFELTEEEWKLKEKYALDDEQ 288

Query: 278 DVAR------------IEILGQFPQQEVNNF 296
              R             +   ++P +  + F
Sbjct: 289 LQWRRYTIRNDCGGDPRQFDQEYPSEPDDAF 319


>gi|294637622|ref|ZP_06715901.1| putative ATP-dependent RNA helicase [Edwardsiella tarda ATCC 23685]
 gi|291089177|gb|EFE21738.1| putative ATP-dependent RNA helicase [Edwardsiella tarda ATCC 23685]
          Length = 448

 Score = 42.6 bits (98), Expect = 0.090,   Method: Composition-based stats.
 Identities = 20/192 (10%), Positives = 46/192 (23%), Gaps = 18/192 (9%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
           SA  G GKT       L  +   P        I+ +  +            +     L  
Sbjct: 47  SAPTGTGKTAAFLLPALQHLLDFPRKKSGPPRILILTPTRELAMQV-----ADQARELAR 101

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
               ++ +     +G  + +    +   ++            +              +  
Sbjct: 102 HTTLDITT----ITGGVSYINHAEIFSTNQDMV-VATPGRLLQYIKEENFDCRSVETLIL 156

Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257
           DEA    D+     +         R   +  +    +   +D  +  LED       +  
Sbjct: 157 DEADRMLDMGFAKDIETVAAETRWRKQTLLFSATLESDAVHDFADRLLEDPVDV---SAE 213

Query: 258 VEGIDSGFHEGI 269
               +    +  
Sbjct: 214 PPRRERKKIQQW 225


>gi|227535679|ref|ZP_03965728.1| possible bacteriophage terminase large subunit [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|227186699|gb|EEI66766.1| possible bacteriophage terminase large subunit [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 570

 Score = 42.6 bits (98), Expect = 0.090,   Method: Composition-based stats.
 Identities = 35/292 (11%), Positives = 74/292 (25%), Gaps = 53/292 (18%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPG---MSIICIANSETQLKNTLWAEVSKWLSMLP 136
             IS  R  GK+ L + ++L+             +  A ++ +    ++  V   L  L 
Sbjct: 100 VFISMARKNGKSLLISGVILYEFLFGKNPANKRQLYTAANDRKQAGIVFGMVKDRLRAL- 158

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
                                    +  D         T      DT             
Sbjct: 159 -------------MRKDPGIKRMVKITRDELVNLDDGSTIRSFSRDTG-LVDGYEPHVAV 204

Query: 197 NDEAS--GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL--------- 245
            DE +   T D+I     G     +   F I T+        F   +             
Sbjct: 205 VDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPMFQQNYPYAKKVLSGEEKA 264

Query: 246 EDWKRYQIDTRTVEGIDSG--FHEG---------------------IISRYGLDSDVARI 282
           E +  +  +   V+ +D    + +                        +R     +   +
Sbjct: 265 ERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLNGQISDYLTTKLAQARADGSLNAKLV 324

Query: 283 EILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334
           +    + Q   ++++  +  + A   +  D       +G D+     D   +
Sbjct: 325 KNFNIWRQATEDSYLDFDAWKAAELTDKPDIRGQRAWIGIDVGRT-SDLFAI 375


>gi|188495109|ref|ZP_03002379.1| terminase [Escherichia coli 53638]
 gi|188490308|gb|EDU65411.1| terminase [Escherichia coli 53638]
          Length = 607

 Score = 42.6 bits (98), Expect = 0.090,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 78/286 (27%), Gaps = 31/286 (10%)

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126
              V      +F+  I  GR  G T   AW          G + I  + S+ Q       
Sbjct: 159 QQYVREHGDELFRF-ILKGRQEGFTYYFAWEGFEKAVLT-GKNQIFFSASKPQA------ 210

Query: 127 EVSKWLSMLPHRHWF--EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
           EV ++  +   + +F  E++   +  S         +    ++ Y+             F
Sbjct: 211 EVFRFYILSIAQQFFGVELKGNPIRLSNGAILRFLATNPNTAQSYSGDLYGDEVFWISKF 270

Query: 185 VGPHNTHGMAVFNDEA--------SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
              H        +DE         S       +   G   + +  +       T +    
Sbjct: 271 ARLHEVASAMATHDEFRITYFSTPSTKTHQAYRLWTGDEWKGDDPKRKAAEFPTSKELRK 330

Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
              +    +  +     D            E + +RY   +       + +F     +  
Sbjct: 331 GGQVCPDGIWRYVITMEDACAKGLSARVNIEKLRNRYSATAFAML--YMCEF-TDSRDTV 387

Query: 297 IPHNYIEEA-----MSREAIDDLYAPL----IM-GCDIAGEGGDKT 332
              + +E+      + ++       P     +  G D +  G + T
Sbjct: 388 FKFSDLEKCEVEFGIWQDFDPSALRPFGNREVWGGFDPSRTGDNST 433


>gi|332800741|emb|CBY88581.1| hypothetical protein [Pantoea phage LIMEzero]
          Length = 589

 Score = 42.6 bits (98), Expect = 0.091,   Method: Composition-based stats.
 Identities = 35/287 (12%), Positives = 73/287 (25%), Gaps = 42/287 (14%)

Query: 8   DQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCH 67
           D     +   ++        F  F+  +F W   G  L           E  E +     
Sbjct: 2   DMLQRLQKAALIREHYLTAGFTKFLRDYFAW--LGYELT----------EMQEDIGKFM- 48

Query: 68  SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127
                 +       + A RG  K+T+     L+     PG +++ ++ S+        A 
Sbjct: 49  -----DDRDYPNKCVMAQRGEAKSTVGIARSLYEFIRNPGGTVLLVSGSDDYAGTLSHAI 103

Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187
           VS  +     R  +      +     + E  +                 S +    F   
Sbjct: 104 VSAIMQ--WDRLDWLKPESRMGARMSFTEGFDVHHSFRIPDKQP-----SVKAVGIFGQL 156

Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM--------TSNTRRLNGWFYD 239
              H   +  D+   T +  + +       L      I             +  +  +  
Sbjct: 157 QGNHVSLLIADDVETTSNGSSPANRARIATLTKEFSAIANNGAEILYLGTPQTQDSIYN- 215

Query: 240 IFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
             ++P   +       R          E      G  +   + ++ G
Sbjct: 216 --SLPQRGFTVRIWPGRYPT------VEEEERYGGCLAPYIKQKLDG 254


>gi|189236459|ref|XP_973989.2| PREDICTED: similar to predicted protein [Tribolium castaneum]
          Length = 988

 Score = 42.6 bits (98), Expect = 0.091,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 69/232 (29%), Gaps = 30/232 (12%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q + +             S       +++A RG GK+     + +         +I   +
Sbjct: 257 QGKALLKFIEAISEKTLRST-----VSLTAARGRGKSAAL-GLSVAAAVAFGYSNIFVTS 310

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            S   L NT +  V K    L ++   +   +      +   ++  ++  D +      +
Sbjct: 311 PSPENL-NTFFEFVFKGFDALEYQEHIDYSLVQSTNPEFNKAIVRVNIFRDHRQTIQYIQ 369

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
               +          +    +  DEA+  P    KS+LG +       F   T N     
Sbjct: 370 PTDSQ--------RLSQAELLVIDEAAAIPLPYVKSMLGPYL-----VFLASTINGYEGT 416

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
           G    +  +     +           +     E I  + G D +    ++L 
Sbjct: 417 GRSLSLKLLQQLRIQA----------VPVTLDESIRYKPGDDVEAWLTKLLC 458


>gi|126015324|gb|ABN70693.1| terminase [Salmonella phage SETP13]
          Length = 223

 Score = 42.6 bits (98), Expect = 0.091,   Method: Composition-based stats.
 Identities = 25/199 (12%), Positives = 61/199 (30%), Gaps = 10/199 (5%)

Query: 81  AISAGRGIGKTTLNAW-MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
           A  AG G GK+ +     +L  +       I     +   ++  L   + + LS    R+
Sbjct: 23  AFVAGFGTGKSEVMCNSALLDSMEGGSDSLIAMYEPTYDLVRLILAPRMEEKLSDWGIRY 82

Query: 140 WFEMQSLSLH-PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
            +      ++  SG + + + +++   ++           +  DT    H  H       
Sbjct: 83  KYNKSDNIIYTSSGQFGDFVLRTLDNPARIVGYESFRAKIDELDTLNKDHAEHAWNKVIA 142

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-DWKRYQIDTRT 257
                P    + I             +    T     + +D + +  +  ++  Q  T +
Sbjct: 143 RNRQLP-RTYRPITP------KPANTVSVFTTPEGFRFVHDRWAVKKKPGYEMIQAATTS 195

Query: 258 VEGIDSGFHEGIISRYGLD 276
              +   + + +   Y   
Sbjct: 196 NPFLPEDYVQSLRDTYPGQ 214


>gi|126465865|ref|YP_001040974.1| DNA topoisomerase type IA central domain-containing protein
           [Staphylothermus marinus F1]
 gi|126014688|gb|ABN70066.1| DNA topoisomerase, type IA, central domain protein [Staphylothermus
           marinus F1]
          Length = 1220

 Score = 42.6 bits (98), Expect = 0.092,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 37/127 (29%), Gaps = 11/127 (8%)

Query: 15  LHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV----HCHSNV 70
           L +  +  +C     N +     +    + LE F+        F +A             
Sbjct: 25  LWDFGVCGKCSDEPGNSINAVTLYHAFKEDLEDFTHF------FGKATGDLNPWGAQLTW 78

Query: 71  NNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK 130
                      I A  G+GKTTL     +++        ++ +A +    K      +  
Sbjct: 79  AKRLLNGENTVIVAPTGMGKTTLLIVYSVYVA-KNYNKKVLFLAPTRALAKQIYTRIIEA 137

Query: 131 WLSMLPH 137
             ++   
Sbjct: 138 VKNVCGT 144


>gi|260775987|ref|ZP_05884883.1| hypothetical protein VIC_001372 [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608403|gb|EEX34572.1| hypothetical protein VIC_001372 [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 966

 Score = 42.6 bits (98), Expect = 0.093,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 74/265 (27%), Gaps = 15/265 (5%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ               N +   +    I   RG+GK+ L   +   +I+   G  I  
Sbjct: 247 EWQQ------MTQVLRGENPTRQPVQCVHIQGDRGVGKSHLMHAVGEHVIAALSGRRITV 300

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           +A  +    + L   +   L++       E    +        E     + +D+K    T
Sbjct: 301 MAREQVDSLSVLAKLLLSALALPGWASTSERSDAAQRIGLSINETERLLVLLDAKAMPRT 360

Query: 173 CRTYSEERPDTFVGPH----NTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
            R                   T    +  D+A        + I     +++     ++ S
Sbjct: 361 ERLALRVATTDAKLVRQVLSQTQVRVLVLDDAECVDGDSWQVIQRAMEQMSVPPRCLIAS 420

Query: 229 NTRRLNGWFYDIFNI-----PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283
           +     G+            PL       +  R      S             +     +
Sbjct: 421 DRPLPWGFSDRWHIQVHTLSPLTREDTTSLAQRWAPSAVSDVVLAQCVDICGGNPAFLRQ 480

Query: 284 ILGQFPQQEVNNFIPHNYIEEAMSR 308
           ++ + P +       ++++++ + R
Sbjct: 481 LILEAPFEAEPLAPSYSFVDQQLER 505


>gi|333028964|ref|ZP_08457027.1| hypothetical protein STTU_p0001 [Streptomyces sp. Tu6071]
 gi|332742172|gb|EGJ72614.1| hypothetical protein STTU_p0001 [Streptomyces sp. Tu6071]
          Length = 911

 Score = 42.6 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 41/332 (12%), Positives = 82/332 (24%), Gaps = 61/332 (18%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIF--KCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
            + Q+E M  +          S  T    +  + +  G GKT   A   L L    P   
Sbjct: 19  RKHQVELMSDLRKWVRVAARESARTERGARATVVSATGTGKTISAAAAALEL---FPSGR 75

Query: 110 IICIANSETQLKNT--LWAEVSKW----------LSMLPHRHWFEMQSLSLHPSGWYAEL 157
           ++ +  +   L  T   W  V               +L         +  +  + W    
Sbjct: 76  VLVMVPTLDLLVQTAQSWRAVGHTAPMVGVCSLPRDLLLEELRVRTTTHPIRLALWAGSG 135

Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGP---HNTHGMAVFNDEASGTPDIINKSILGF 214
               +   S       +    E      G              DEA              
Sbjct: 136 PVVVLATYSSLVGEDGQGGPLEAALAGAGLYGQRMDGFDLAVVDEAH------------- 182

Query: 215 FTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYG 274
            T  +  + W                 +        +++       + +           
Sbjct: 183 RTAGSAEKAWAAI--------------HDNARFPAAHRLYLTATPRVLAPARPARHEGEE 228

Query: 275 LDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI----------DDLYAPLIMGCD- 323
              +   +  +   P  E   +I    + EA++R+ +           D    L+ G D 
Sbjct: 229 GRGEAPALVTMANDPAGEYGAWIHELGLSEAIARKIVAPFEIDVLEITDPEPELMEGLDR 288

Query: 324 IAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
            A  G     +   +  ++EH  + +   +  
Sbjct: 289 EARRGR---RLALLQTGLLEHAAEHNICTMMT 317


>gi|315652132|ref|ZP_07905130.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315485624|gb|EFU76008.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 1191

 Score = 42.6 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 21/181 (11%), Positives = 53/181 (29%), Gaps = 11/181 (6%)

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG-MSIICIANSETQLKNT 123
                +        +  ++   G+GKT   A ++L  +  R    S++ I       +  
Sbjct: 273 QFRPALKMIKSDSPRILVADDVGVGKTI-EAGLILKEMEARSSLSSVLVICPRPLVAERK 331

Query: 124 LWAEVSKW---LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID--SKHYTITCRTYSE 178
              E+ ++    + L  R   E    +     W     +  +     ++   +  ++ S 
Sbjct: 332 WQLEMKRFDENFTQLDGRTLAECIQETDRDGEWPERYSKTVIPYSLFNEDSILGTQSKSS 391

Query: 179 ERPDTFVGPHNT---HGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTSNTRRLN 234
           ++             H   +  DEA    +              N +    +T+   + +
Sbjct: 392 KKHRNLGLAELDPIPHFDLLIVDEAHNIRNSNTWMYRGVELFCRNADAVVFLTATPLQNS 451

Query: 235 G 235
            
Sbjct: 452 N 452


>gi|32455538|ref|NP_862293.1| Ycg4A [Corynebacterium glutamicum]
 gi|9836705|gb|AAG00269.1|AF164956_1 Ycg4A [Corynebacterium glutamicum]
          Length = 716

 Score = 42.6 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 52/187 (27%), Gaps = 28/187 (14%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            RWQ                          I    G GKT + A    +L +  P   I 
Sbjct: 196 DRWQKAAAIESPEGPQR-------------IRGLAGSGKTVVLALKAAYLHTQHPDWRIA 242

Query: 112 CIANS---ETQLKNTLWAEVSKWLSMLPHRHWFEMQSL-SLHPSGWYAELLEQSMGIDSK 167
              +S     Q+ + +     +  +  P     ++              ++ +++G   +
Sbjct: 243 LTFHSRSLYEQMDDLVTRFTFEHSNDQPDEEHLKIIHTWGSSSRPGVYSMIARALGEVPR 302

Query: 168 HYTITCRTYSEERP----------DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217
           ++     TY  +                   N    AV  DEA   P    + ++  FT+
Sbjct: 303 NWAYARATYGMDNAFQGICAELLSIAESKTINPIFDAVLIDEAQDLPPEFFR-LVYLFTK 361

Query: 218 LNPNRFW 224
                 W
Sbjct: 362 HPKRIVW 368


>gi|315653149|ref|ZP_07906074.1| type III restriction-modification enzyme [Lactobacillus iners ATCC
           55195]
 gi|315489514|gb|EFU79151.1| type III restriction-modification enzyme [Lactobacillus iners ATCC
           55195]
          Length = 879

 Score = 42.6 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 58/186 (31%), Gaps = 16/186 (8%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q E  +    +   +    N  I      A  G GKT + A ++L+L +      + 
Sbjct: 37  REYQKEAFQYFVTYFEKDGLRKNKQIHTLFHMA-TGSGKTVMMAGLILYLYTKGYRKFLF 95

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +  +     N L      +L+ L  ++ F  +   L       ++   S         +
Sbjct: 96  FVNQT-----NILKKTEENFLNTLSSKYLFADELSYLGMKIKVKKVDRFSDIPFDDDIEL 150

Query: 172 TCRTYSEERPDTFVGPHN--------THGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
              T  +   D +    N           + + +DE+        K      TE +  + 
Sbjct: 151 LFTTTQKLHMDMWDAKENAPTCADFENDKIVLISDESHHINSNTKK--KKTSTEEDDEKS 208

Query: 224 WIMTSN 229
           W  T N
Sbjct: 209 WEYTVN 214


>gi|195443932|ref|XP_002069642.1| GK11465 [Drosophila willistoni]
 gi|194165727|gb|EDW80628.1| GK11465 [Drosophila willistoni]
          Length = 2181

 Score = 42.6 bits (98), Expect = 0.095,   Method: Composition-based stats.
 Identities = 20/175 (11%), Positives = 42/175 (24%), Gaps = 20/175 (11%)

Query: 45   LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            L  F+  +  Q +    +    +              + A  G GKT +    +   ++ 
Sbjct: 1329 LYKFTHFNPIQTQIFHCLYHTDN-----------NVLLGAPTGSGKTIVAEIAIFRALNK 1377

Query: 105  RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
             P   ++ IA  +  +K  +     ++          E+            E        
Sbjct: 1378 EPKSKVVYIAPLKALVKERIADWQQRFERSPLGLKVVELTGDVTPDIQAIRESQLIVTTP 1437

Query: 165  DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
            +            E            H   +  DE     +     I    +  N
Sbjct: 1438 EKWDGISRSWQTREYV---------QHVSLIVIDEIHLLGEDRGPVIEVIVSRTN 1483


>gi|306825919|ref|ZP_07459257.1| DNA endonuclease [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304431851|gb|EFM34829.1| DNA endonuclease [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 913

 Score = 42.6 bits (98), Expect = 0.096,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 53/173 (30%), Gaps = 7/173 (4%)

Query: 38  WGIKGKPLEHFSQ-PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
           W +    +E+    P  +Q E +     +  ++         +   +   G GKT L A 
Sbjct: 33  WELPQYIIENLKHEPRSYQSEAIRY-FHYTQASDTFKFRKPRQLMFNMATGSGKTDLMAG 91

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
           ++L+L   +   + +   N+   L  T+    +   +        E+    +  +     
Sbjct: 92  LILYLYKEKGYQNFLFTVNTNGVLSKTIDNLTNAQSTKFLFNSNLEIDGEHIFINQISGR 151

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN-----THGMAVFNDEASGTP 204
             +           ++ +T + +         +        M +  DEA    
Sbjct: 152 FPDFPNKNVINIKFVSIQTLTNDLFTQAENIMSLKDYQKTKMVILADEAHHYS 204


>gi|256811339|ref|YP_003128708.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus fervens
           AG86]
 gi|256794539|gb|ACV25208.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus fervens
           AG86]
          Length = 362

 Score = 42.6 bits (98), Expect = 0.096,   Method: Composition-based stats.
 Identities = 20/198 (10%), Positives = 44/198 (22%), Gaps = 25/198 (12%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
            F +P   Q++            V             A  G GKT   A  ++ LI    
Sbjct: 20  GFEKPTDIQMKV-----------VPLFLNESCNIVAQARTGSGKTASFAIPLIELIDEDS 68

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
           G+  I +  +            +  +  L      ++         +  + +   +    
Sbjct: 69  GIEAIILTPTRELAIQV-----ADEIDSLKGNKNLKIT------KVYGGKAIHPQIKALK 117

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFF--TELNPNRF 223
           K   +                +  +      DEA         + +         N    
Sbjct: 118 KANIVVGTPGRVLDHINRGTLNLKNVKYFILDEADEMLNMGFIEDVEKILNACNKNKRIL 177

Query: 224 WIMTSNTRRLNGWFYDIF 241
               +  + +        
Sbjct: 178 LFSATMPKEILNLAKKYM 195


>gi|260817878|ref|XP_002603812.1| hypothetical protein BRAFLDRAFT_124682 [Branchiostoma floridae]
 gi|229289135|gb|EEN59823.1| hypothetical protein BRAFLDRAFT_124682 [Branchiostoma floridae]
          Length = 2137

 Score = 42.6 bits (98), Expect = 0.096,   Method: Composition-based stats.
 Identities = 23/188 (12%), Positives = 46/188 (24%), Gaps = 17/188 (9%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               I A  G GKT    + +L LIS  P    + +   E+  +       S W +     
Sbjct: 1344 NVFIGAPTGSGKTICGEFSVLRLISQNPEGRCVYVTPMESLAEQVY----SDWYAK---- 1395

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
              F++Q              +  +         T   +           +  +      D
Sbjct: 1396 --FQVQLGKKVVMLTGETSTDLKLLAKGNIIISTPDRWDVLSRRWKQRKNVQNVNLFIVD 1453

Query: 199  EASGTPDIINKSIL-------GFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY 251
            EA          +           +++      +  S++                    +
Sbjct: 1454 EAHLIGGENGPVLEVICSRMRYIASQIERQIRIVALSSSLSNAKDIAQWLGATTNSTFNF 1513

Query: 252  QIDTRTVE 259
              + R V 
Sbjct: 1514 HPNVRPVP 1521


>gi|284044842|ref|YP_003395182.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684]
 gi|283949063|gb|ADB51807.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM
           14684]
          Length = 590

 Score = 42.6 bits (98), Expect = 0.097,   Method: Composition-based stats.
 Identities = 22/248 (8%), Positives = 49/248 (19%), Gaps = 30/248 (12%)

Query: 22  AECVLSFKNFVMRFFPWGIKGKPLE-HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKC 80
           ++       F        +        + +P   Q E +                     
Sbjct: 8   SDDASDTTTFADLALRRELLDALTGLGYEEPTPIQREAI------------PPLLEGRDL 55

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRP---GMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
              A  G GKT   A  +L  +       G   + +  +         A + ++   L  
Sbjct: 56  LGQAATGTGKTAAFALPILQRMEPGRSAIGPLALVLVPTRELAVQVSEA-LHRYGRSLGA 114

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
           R         +       +              +           +           V  
Sbjct: 115 RVLPIYGGQPIGRQLNALKR---------GVDVVVGTPGRVLDHISRNTLRLDELRIVVL 165

Query: 198 DEA-SGTPDIINKSILGFFT---ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253
           DEA         + I        +          +   R++       + P+      + 
Sbjct: 166 DEADEMLDMGFAEDIESILAETPDGGRQTVLFSATMPPRIDRIARAHLSDPVRIEIARET 225

Query: 254 DTRTVEGI 261
                  +
Sbjct: 226 SAGDTPLV 233


>gi|195400969|ref|XP_002059088.1| GJ15181 [Drosophila virilis]
 gi|194141740|gb|EDW58157.1| GJ15181 [Drosophila virilis]
          Length = 1010

 Score = 42.6 bits (98), Expect = 0.097,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 66/207 (31%), Gaps = 22/207 (10%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            +++A RG GK+     + +    +   +++   +     L   L+  + K    L ++ 
Sbjct: 275 ISLTAARGRGKSA-AMGLAIAGAISFGYVNVYVTSPHPENLIT-LFEFILKGFDALEYQE 332

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +   +      +   ++  ++  +S+              +            +  DE
Sbjct: 333 HADYTIIRSTNPDFKKAIIRINITRNSRQTIQYIAPSDTHLLNAAD--------LLMIDE 384

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
           A+  P       L    ++       M S    +NG+     ++ L+   + Q D     
Sbjct: 385 AAAIP-------LPLVKKMIGPYLIFMAST---INGYEGTGRSLSLKLIAQIQKDNNAHP 434

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILG 286
            I     E I  +   D +   I +L 
Sbjct: 435 PITLE--ESIRYKPNDDIERWLINLLC 459


>gi|310658353|ref|YP_003936074.1| helicase [Clostridium sticklandii DSM 519]
 gi|308825131|emb|CBH21169.1| putative helicase [Clostridium sticklandii]
          Length = 1034

 Score = 42.6 bits (98), Expect = 0.098,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 65/185 (35%), Gaps = 28/185 (15%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P+ +Q E ++ +++           + +   ++A  G GKT ++A+         P   +
Sbjct: 315 PYAYQQEILDRLEI-----EREVYNSYYNLIVAA-TGTGKTMVSAFDFKNFYKDNPSAKL 368

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + +A+ E  L  ++ A    +  +L   ++ E+   +  PS +            +    
Sbjct: 369 LFLAHREEILSQSVMA----FRGVLKDANFGELWVGNHRPSIFNHVFASIQTLNSN---- 420

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
                      + +      +   +  DE+  T     + I    +  +      +T+  
Sbjct: 421 -----------EQYKEFACDYFDYIVLDESHHTTASSYRKI---LSHFDSKIMLGLTATP 466

Query: 231 RRLNG 235
            RL+G
Sbjct: 467 ERLDG 471


>gi|28378987|ref|NP_785879.1| prophage Lp2 protein 35 [Lactobacillus plantarum WCFS1]
 gi|28271825|emb|CAD64730.1| prophage Lp2 protein 35 [Lactobacillus plantarum WCFS1]
          Length = 219

 Score = 42.6 bits (98), Expect = 0.098,   Method: Composition-based stats.
 Identities = 24/204 (11%), Positives = 60/204 (29%), Gaps = 17/204 (8%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
           ++  I   RG  K+   A  +++ +      +I+ +  +    K + + E    ++    
Sbjct: 29  YRV-IKGSRGSKKSVTTAHNLIYRLVKYHWSNILVVRRNANTNKTSTFVECKNAINDFHL 87

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
             +F+                   +        I  R   +    T V         ++ 
Sbjct: 88  ERYFKYNES------------LPEITYLPTGQKIIFRGLDDPLKLTSVNVLTGELCWLWV 135

Query: 198 DEASGT-PDIINKSILGFFTELNPNRF--WIMTSNTRRLNGWF-YDIFNIPLEDWKRYQI 253
           +EA         ++++      +P  F    +T N    + W   + F+   +D      
Sbjct: 136 EEAYEIESFSKLQTVIESLRGNDPQVFYQVTLTFNPWNEHHWLKREFFDQKRDDAFVRTT 195

Query: 254 DTRTVEGIDSGFHEGIISRYGLDS 277
             R  E +   + + +        
Sbjct: 196 TVRCNEFVSDEYKQRLYRFIPNQP 219


>gi|115656178|ref|XP_001203626.1| PREDICTED: similar to DEAD/H box polypeptide RIG-I
           [Strongylocentrotus purpuratus]
 gi|115681731|ref|XP_001184982.1| PREDICTED: similar to DEAD/H box polypeptide RIG-I
           [Strongylocentrotus purpuratus]
          Length = 303

 Score = 42.6 bits (98), Expect = 0.099,   Method: Composition-based stats.
 Identities = 17/161 (10%), Positives = 34/161 (21%), Gaps = 30/161 (18%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI-------STRPG 107
           Q + +     H    +       +   I A  G GKT   A +    +            
Sbjct: 3   QRKRLR----HYQEELAVPGLNGYNYIICAPTGSGKTMTAASLCHRRMVELQKQGERFKA 58

Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHR-HWFEMQSLSLHPSGWYAELLEQSMGIDS 166
             I+   + + Q ++  W       ++   +   F         +            +  
Sbjct: 59  TFIVPTRHLKGQQRDAFWDIFKPTSAVAVTKTSQFRRTFDDPRVNVLMITAQILVNALHH 118

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207
            H                          +  DE   T    
Sbjct: 119 GH------------------FRFEELSMLVFDECHHTTQKH 141


>gi|260061160|ref|YP_003194240.1| hypothetical protein RB2501_06165 [Robiginitalea biformata
           HTCC2501]
 gi|88785292|gb|EAR16461.1| hypothetical protein RB2501_06165 [Robiginitalea biformata
           HTCC2501]
          Length = 1119

 Score = 42.6 bits (98), Expect = 0.099,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 58/192 (30%), Gaps = 19/192 (9%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
            + +E    + +   ++  P      +    G GK+   + +++ L     G +I   A 
Sbjct: 723 EDILEYTFDYVNKLDHSYLP------VQGPPGSGKSFTGSQLIVRLAQQ--GKTIGITAL 774

Query: 116 SETQLKNTLWAEVSKWLSM-LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
           S   ++N L         M    R   ++ S +  P+ W     E  +        +   
Sbjct: 775 SHKVIRNLLTKVWEVAQEMDFDIRMIQKVNSSNQEPAPWTLASNEDDIQNAFGTANVIAG 834

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
           T           P+      +F DEA          ++      +     ++  + ++L 
Sbjct: 835 TSFMW----CKSPYEGRLDYLFIDEAGQLS------LIDTLAVAHSCSNLVLLGDPQQLK 884

Query: 235 GWFYDIFNIPLE 246
                +     +
Sbjct: 885 QPQQGVHPDGTD 896


>gi|307940746|gb|ADN95987.1| polyprotein [Chionodraco hamatus]
          Length = 2968

 Score = 42.6 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 42/170 (24%), Gaps = 39/170 (22%)

Query: 55   QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM------MLWLISTRPGM 108
            Q+     +   C   ++  NP  F   I+ G G GK+ L   +      +L  +   P  
Sbjct: 2284 QMSIFYQIRQWCLDKISGKNPDPFHVFITGGAGTGKSHLIKALQYETTRLLSPLCDHPDS 2343

Query: 109  S-IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
              ++  A +                                  + +  +           
Sbjct: 2344 VCVLLTAPTG--------------------------------IAAYNLDAATIHNTFSIG 2371

Query: 168  HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217
              +    T   E     +     +   V  DE S     +   I G   +
Sbjct: 2372 VNSKLPYTPLGEEKINSLRAKYRNVQIVIVDEISMVDHKLMAYIHGRLRQ 2421


>gi|300214695|gb|ADJ79111.1| DNA/RNA helicase, DEAD/DEAH box family [Lactobacillus salivarius
           CECT 5713]
          Length = 986

 Score = 42.6 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 62/195 (31%), Gaps = 31/195 (15%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           +        +P++ Q E ++ +                K  I +  G GKT L A  +  
Sbjct: 210 EDNSNYSIIKPNKMQKEALKNL-------QKLRLLRETKGLIISATGTGKTYLAALDV-- 260

Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
                     + +A+ E  LK +L      +  +L          LS +           
Sbjct: 261 --KNYNPKRFLFVAHREQILKKSL----DSFHKVLGGDKKTNYGILSGNTK--------- 305

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220
               D+K+   T +T S+   +            +  DEA      I   +L +FT   P
Sbjct: 306 --NTDAKYLFATVQTLSK--AENLNQFKRDEFDYILIDEAHHVGSKIYGKLLDYFT---P 358

Query: 221 NRFWIMTSNTRRLNG 235
           +    MT+   R + 
Sbjct: 359 DFLLGMTATPERSDD 373


>gi|195109152|ref|XP_001999154.1| GI23225 [Drosophila mojavensis]
 gi|193915748|gb|EDW14615.1| GI23225 [Drosophila mojavensis]
          Length = 2178

 Score = 42.6 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 21/175 (12%), Positives = 43/175 (24%), Gaps = 20/175 (11%)

Query: 45   LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            L  FS  +  Q +    +    +              + A  G GKT +    +   ++ 
Sbjct: 1327 LYKFSHFNPIQTQIFHCLYHTDN-----------NVLLGAPTGSGKTIVAEIAIFRALNL 1375

Query: 105  RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
            +P   ++ IA  +  +K  +     ++          E+            E        
Sbjct: 1376 QPKSKVVYIAPLKALVKERIADWQQRFERSPLGLKVVELTGDVTPDIQAIRESQLIVTTP 1435

Query: 165  DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
            +            E            H   +  DE     +     I    +  N
Sbjct: 1436 EKWDGISRSWQTREYV---------QHVSLIVIDEIHLLGEDRGPVIEVIVSRTN 1481


>gi|119487419|ref|XP_001262502.1| DEAD/DEAH box helicase, putative [Neosartorya fischeri NRRL 181]
 gi|119410659|gb|EAW20605.1| DEAD/DEAH box helicase, putative [Neosartorya fischeri NRRL 181]
          Length = 2003

 Score = 42.6 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/123 (11%), Positives = 32/123 (26%), Gaps = 10/123 (8%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               + +  G GKT      M W    +PG  ++ IA  +  ++  +     +    +  +
Sbjct: 1160 NVLLGSPTGSGKTVACELAMWWAFREKPGSKVVYIAPMKALVRERVMDWGKRLTGPMGLK 1219

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               E+   +   +    +        +            +                V  D
Sbjct: 1220 -LVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRDYV---------RKVSLVIID 1269

Query: 199  EAS 201
            E  
Sbjct: 1270 EIH 1272


>gi|194015756|ref|ZP_03054372.1| phage terminase, large subunit, pbsx family [Bacillus pumilus ATCC
           7061]
 gi|194013160|gb|EDW22726.1| phage terminase, large subunit, pbsx family [Bacillus pumilus ATCC
           7061]
          Length = 438

 Score = 42.6 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 62/227 (27%), Gaps = 38/227 (16%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           +  G G  K+     + L L       + + I       +++ ++   + ++ L   H  
Sbjct: 27  LVGGYGSSKSYHI-ALKLILKLLDEKRTALVIREVYDTHRDSTFSLFEEIVNDLGLDHVI 85

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
           + ++  L                 +    I                   +   ++ +E S
Sbjct: 86  QCRTSPLML------------KFHNGSRIIFKGLDKPA-----KLKSINNISIIWIEECS 128

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-------------------- 241
                  K +LG       +   I+++N    + W Y  F                    
Sbjct: 129 EVKYEGFKELLGRLRHPTLDLHMILSTNPVGQDNWTYRHFFKDDQNNRFILDDERLYKER 188

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
            I + D   +         +   + + +      D D+ RI   G F
Sbjct: 189 TIAINDTYYHHSTAEDNLFLPVSYIKQLDELKEYDPDLYRIARKGHF 235


>gi|38233611|ref|NP_939378.1| putative helicase [Corynebacterium diphtheriae NCTC 13129]
 gi|38199871|emb|CAE49537.1| Putative helicase [Corynebacterium diphtheriae]
          Length = 1043

 Score = 42.6 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 53/188 (28%), Gaps = 34/188 (18%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA---WMMLWLISTRPG 107
           P+ +Q + +E++                +  + A  G GKT + A     M   +  RP 
Sbjct: 315 PYPYQQDMLESLQA------EREQHNRHRNLLVAATGTGKTVVAALDYRSMCDALGRRP- 367

Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
             ++ IA+     K  L   +  +  +L   ++ E+    + P  W              
Sbjct: 368 -RLLFIAHR----KEILQQALRTFREVLSDGNFGELLVDGVLPKEWTH------------ 410

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
                  +               H   +  DE          S         P     +T
Sbjct: 411 ----VFASIQSLNTSRMEALGKDHFEFIIIDEFH---HAQAISYRKVMDYFEPQELLGLT 463

Query: 228 SNTRRLNG 235
           +   R +G
Sbjct: 464 ATPERGDG 471


>gi|156545481|ref|XP_001606961.1| PREDICTED: similar to CG2990-PB [Nasonia vitripennis]
          Length = 1191

 Score = 42.6 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/180 (9%), Positives = 45/180 (25%), Gaps = 18/180 (10%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
            +  + ++ H    +  +        I    G GKT     ++   +  +   S++  A+
Sbjct: 758 EDIFKKINEHQKQAILQALRADNYLLIKGFPGTGKTQTLVALI--ELLLKLDKSVLITAH 815

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
           + T + N L   +            F   + +        E          +       +
Sbjct: 816 TNTAVDNILLKLI----ERKIDFIRFGNSTKTHPNIAPMLEANVTEHCDSPESLHTVYCS 871

Query: 176 YSEERPDTFVGPHN----THGMAVFNDEASGTPDIINKSILGFFTEL-NPNRFWIMTSNT 230
                   +   H             DE++       + +             +I+  + 
Sbjct: 872 KKVVGVTCYGATHAHLSRRKFDICIVDEST-------QVLQPTLLRPLYSASKFILVGDP 924


>gi|171741951|ref|ZP_02917758.1| hypothetical protein BIFDEN_01054 [Bifidobacterium dentium ATCC
           27678]
 gi|283456905|ref|YP_003361469.1| helicase [Bifidobacterium dentium Bd1]
 gi|171277565|gb|EDT45226.1| hypothetical protein BIFDEN_01054 [Bifidobacterium dentium ATCC
           27678]
 gi|283103539|gb|ADB10645.1| Helicase [Bifidobacterium dentium Bd1]
          Length = 691

 Score = 42.6 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 48/167 (28%), Gaps = 26/167 (15%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           +P  +Q E ++A+      +           A+ A  G GKT  +  +   L    PG +
Sbjct: 163 EPRDYQREAIDAIKTELKDHD-------RALAVMAC-GTGKTLTSLRLSEELC---PGGT 211

Query: 110 IICIANSETQLKNTLWAEVSKWLSM------------LPHRHWFEMQSLSLHPSGWYAEL 157
           ++ +A S + +  T+   V +                   ++      LS  P       
Sbjct: 212 VLFLAPSISLVSQTMRGWVDQVRGRINPYVVCSDGKASKLKNDESYGQLSDIPYPATTNA 271

Query: 158 LEQSMGIDSKH---YTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
              +     +      +     S +               +  DEA 
Sbjct: 272 DTIASRFHKRDDALNVVFSTYQSIDVVARAQQLGLPDFDLIVCDEAH 318


>gi|322503893|emb|CBZ38979.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1285

 Score = 42.6 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 64/243 (26%), Gaps = 24/243 (9%)

Query: 43  KPLEHFSQP-HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101
              E   +P   +Q   +  +     +N+N               G+GKT     ++ + 
Sbjct: 255 LDTEGGQRPLRHYQRSALRWMVHLYENNLNGILADEM--------GLGKTVQTIALLCYF 306

Query: 102 ISTRPGMSI-ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
                     + +  +   L     AE+ +W   L    +             +      
Sbjct: 307 AEYHNDWGPHLIVVPTTVVLN--WKAELERWSPGLKVLTYIGSTKERHLLRKGWT----- 359

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220
                S+     C T                   +  DEA    +           +L  
Sbjct: 360 -----SEDAFHVCVTSYNLVVQDRKAFRRRPWGFLVLDEAHHVKN-FMSLKWQSLFDLQA 413

Query: 221 NRFWIMTSNT-RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279
               ++T    +      + +F+  L     ++ +    E   +   E I  R  L+ D+
Sbjct: 414 EYRLLLTGTPLQNSIMELWSLFHFLLPFASAFRSNAEFKEWFSNPMDEMITGRSTLNEDI 473

Query: 280 ARI 282
            R 
Sbjct: 474 VRR 476


>gi|290985850|ref|XP_002675638.1| predicted protein [Naegleria gruberi]
 gi|284089235|gb|EFC42894.1| predicted protein [Naegleria gruberi]
          Length = 920

 Score = 42.6 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 64/235 (27%), Gaps = 31/235 (13%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            ++Q +  E V              +    +    G+GKT + + +M       P   II
Sbjct: 154 RKYQFKICEKV-------------LLTNTLVCLPTGLGKTFIASVVMYNYYRWFPIGKII 200

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +A++ + +   +    +   +++        +  ++  +G  +      +    + +  
Sbjct: 201 FLAHTISLVDQQM----NACYNIMGI-----PEEETVVLTGRISPDERVDLWKTKRVFFC 251

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP-DIINKSILGFFTELNPNRFWIMTSNT 230
           T     ++             + V  DEA     +     +     + N +   +  S T
Sbjct: 252 TPECVEKDLETGSCPAR--QVVLVVFDEAHKASGNHAYCVVTKLIGKKNDHWRVLGLSAT 309

Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
                          +     +I    V           +      + +   +  
Sbjct: 310 PGKT------HADIQKVITNLRISHVEVRDESDKDVAEYLHEKETKTIICNRDRD 358


>gi|255020480|ref|ZP_05292545.1| Exodeoxyribonuclease V alpha chain [Acidithiobacillus caldus ATCC
           51756]
 gi|254970090|gb|EET27587.1| Exodeoxyribonuclease V alpha chain [Acidithiobacillus caldus ATCC
           51756]
          Length = 654

 Score = 42.6 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/166 (11%), Positives = 37/166 (22%), Gaps = 20/166 (12%)

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126
                          I+ G G GKT   A +++ L+   P   +   A +          
Sbjct: 189 QRLACALAAERGFTLITGGPGSGKTYTIARLLVLLMQAAP-RRVALAAPTGKAALRM--- 244

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
                            QS+         +L +    +                      
Sbjct: 245 ------------DTALRQSVDDFVRRGDDDLADLLRQVPPAQTLHRLLGARPGTRRLRHD 292

Query: 187 PHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
            H   +   +  DEAS     +  ++             I+  +  
Sbjct: 293 AHRPLNFDLLVVDEASMIQHDLMAAL---LRATPARSQLILLGDPD 335


>gi|254454372|ref|ZP_05067809.1| phage DNA Packaging Protein [Octadecabacter antarcticus 238]
 gi|198268778|gb|EDY93048.1| phage DNA Packaging Protein [Octadecabacter antarcticus 238]
          Length = 163

 Score = 42.6 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 42/165 (25%), Gaps = 28/165 (16%)

Query: 45  LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI-SAGRGIGKTTLNAWMMLWLIS 103
           L   S P   QL+ +  +      +   +    ++  I   GRG GKT  +A  +  ++ 
Sbjct: 20  LRGLSGP---QLKALPYLFEIWALDHQLAPEGDWRTWIILGGRGAGKTRASAEWVRSMVE 76

Query: 104 TRPG------MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
                       +  I  +  Q +  +    S  L+  P     +               
Sbjct: 77  GSRPRDPGMARHVGLIGETMEQAREVMVFGASGILACSPPDRRPQW-------------- 122

Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
               +   +                            V+ DE + 
Sbjct: 123 ----ILGRNLLVWPNGAEARLYSAFDPERLRGPQFDEVWADELAK 163


>gi|154420635|ref|XP_001583332.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121917573|gb|EAY22346.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 449

 Score = 42.6 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 64/245 (26%), Gaps = 26/245 (10%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR- 105
           +F+ P + Q E +  +          S   I   AI+   G GK+      ++  + T  
Sbjct: 26  NFTNPTKVQAETIPKI---------LSGQDICATAIT---GSGKSMAFLIPIVQKLLTFR 73

Query: 106 --PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
             PG   + ++ +          E+++ L  +           S    G  ++  ++ + 
Sbjct: 74  GLPGPKALIMSPT---------RELAQQLKAVCDMLAAHCAITSTLVIGGVSDEEQRELL 124

Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE--LNPN 221
             +    I       +           H      DEA        +S L          +
Sbjct: 125 TPAPDIIIGTPGRFIDSIFNAKVLKLEHLQFFVLDEADRLLGKGFESQLNTIVSQLPEKH 184

Query: 222 RFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR 281
           +  + T+                  +             I   F +       L   VA 
Sbjct: 185 QTLLFTATLNDQVAKLATKIQKKSSEKISINPYMELNPNITQMFIKTKKEERRLPYLVAL 244

Query: 282 IEILG 286
              + 
Sbjct: 245 CRNMC 249


>gi|71004784|ref|XP_757058.1| hypothetical protein UM00911.1 [Ustilago maydis 521]
 gi|46096862|gb|EAK82095.1| hypothetical protein UM00911.1 [Ustilago maydis 521]
          Length = 1490

 Score = 42.6 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 69/210 (32%), Gaps = 15/210 (7%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               +   G+GKT + A ++L      P   I+ +A +           V +  +     
Sbjct: 296 NVLAALPTGLGKTFIAAVVILNFFRWYPDGKILFLAPTR--------PLVDQQKTACHRI 347

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                   ++  +G  A           + + +T +T+  +  +    P     + V  D
Sbjct: 348 CGLPWDC-AIDLTGNTAGSRRGDYWATKRIFYMTPQTFENDLREKRCDPR--DIVCVVID 404

Query: 199 EASGTPDII-NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF--NIPLEDWKRYQIDT 255
           EA          +++G   E+NP+   +  S T   +          + +   +    + 
Sbjct: 405 EAHKARGKYAYGNVIGRIMEVNPHFRVLALSATPGKDSESVQEVVDQLHINQIEIRTEEA 464

Query: 256 RTVEGIDSGFHEGIISRY-GLDSDVARIEI 284
             V+       E I++   G D ++ + + 
Sbjct: 465 IDVQRYMFRKREEIVNVTLGKDLNLVKEKW 494


>gi|301607559|ref|XP_002933375.1| PREDICTED: probable ATP-dependent RNA helicase DDX60-like [Xenopus
           (Silurana) tropicalis]
          Length = 1523

 Score = 42.6 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/201 (11%), Positives = 58/201 (28%), Gaps = 27/201 (13%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P  WQ + ++ VD +  +             I A    GKT  + + M  ++S      +
Sbjct: 644 PDTWQRKLLDVVDNNESA------------VIVAPTSSGKTYASYYCMQKVLSQGHEGVV 691

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + ++ ++  +   +   ++++   LP+           + +      +  ++        
Sbjct: 692 VYVSPTKALVNQVVTTVINQFNKNLPNGVALCGVFTRDYRTDALNSQILVTV-----PNC 746

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEAS----GTPDIINKSILGFFTELNPNRFWIM 226
           +     S  R +            V  DE           + + +L              
Sbjct: 747 LEILLLSPHRQEWAKRIK-----YVIFDEIHCLGGEIGAEVWEHLLVMIRCP-FLALSAT 800

Query: 227 TSNTRRLNGWFYDIFNIPLED 247
            SN   L  W   + +     
Sbjct: 801 ISNPEHLTEWLQSVKHYWERR 821


>gi|217077055|ref|YP_002334771.1| ATP-dependent RNA helicase [Thermosipho africanus TCF52B]
 gi|217036908|gb|ACJ75430.1| ATP-dependent RNA helicase [Thermosipho africanus TCF52B]
          Length = 516

 Score = 42.6 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 34/313 (10%), Positives = 77/313 (24%), Gaps = 50/313 (15%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
            F  P   Q + +  +                   + A  G GKT      ++ L+  + 
Sbjct: 20  GFENPTPVQEKVIPTL-----------LKKEKNLIVQAKTGTGKTAAFGIPLIELLENKG 68

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
            +  I +  +          E++                L + P      +  Q   +  
Sbjct: 69  YVQAIILTPTRELALQVS-EEINSLKRK----------KLKILPIYGGQSIQRQIDHLRK 117

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFF--TELNPNRF 223
               +                  +       DEA           +      T  +    
Sbjct: 118 GVDIVVGTPGRILDHLERGTIDLSKVDYFILDEADEMLDMGFIDDVEKILKSTSDDKFFL 177

Query: 224 WIMTSNTRRLNGWF------YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277
               +  +R+          Y++  I  +       +   +E  +S   E +     ++ 
Sbjct: 178 MFSATIPKRIIDLAKKYIKNYEVIKIQDKQLTTNLTEQIYIELRESDKFEALCRIIDMEE 237

Query: 278 DVA-----RIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL-----------IMG 321
           +       R ++         +  I   Y  EA+  +        +           ++ 
Sbjct: 238 EFYGMVFCRTKVE---VDTVSSKLIERGYDAEALHGDFSQYQRERVLKKFREKKVNILVA 294

Query: 322 CDIAGEGGDKTVV 334
            D+A  G D T +
Sbjct: 295 TDVAARGIDITGL 307


>gi|195391276|ref|XP_002054289.1| GJ22884 [Drosophila virilis]
 gi|194152375|gb|EDW67809.1| GJ22884 [Drosophila virilis]
          Length = 2179

 Score = 42.6 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/175 (11%), Positives = 43/175 (24%), Gaps = 20/175 (11%)

Query: 45   LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            L  F+  +  Q +    +    +              + A  G GKT +    +   ++ 
Sbjct: 1329 LYKFTHFNPIQTQIFHCLYHTDN-----------NVLLGAPTGSGKTIVAEIAIFRALNL 1377

Query: 105  RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
            +P   ++ IA  +  +K  +     ++          E+            E        
Sbjct: 1378 QPKCKVVYIAPLKALVKERIADWQQRFERSSLGLKVVELTGDVTPDIQAIRESQLIVTTP 1437

Query: 165  DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
            +            E            H   +  DE     +     I    +  N
Sbjct: 1438 EKWDGISRSWQTREYV---------QHVALIVIDEIHLLGEDRGPVIEVIVSRTN 1483


>gi|50308703|ref|XP_454355.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74690158|sp|Q6CNY4|INO80_KLULA RecName: Full=Putative DNA helicase INO80
 gi|49643490|emb|CAG99442.1| KLLA0E08999p [Kluyveromyces lactis]
          Length = 1489

 Score = 42.6 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 57/234 (24%), Gaps = 25/234 (10%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            +QL+ +  +       +N               G+GKT + +  +L  ++ R  +    
Sbjct: 748 EYQLKGLNWLANLYDQGINGILADEM--------GLGKT-VQSISVLAHLADRYNIWGPF 798

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           I  +     +    E+S+++       ++   +       +      + +          
Sbjct: 799 IVVTPASTLHNWVNEISRFVPQFKILPYWGNANDRKTLRKF---WDRKHLRYGRDAPFHV 855

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232
             T  +                +  DEA         S        +     ++T     
Sbjct: 856 MVTSYQMVVSDASYLQKMKWQYMILDEAQAIKSSQ-SSRWKTLLSFHCRNRLLLTGTP-- 912

Query: 233 LNGWFYDIFNIPLEDW---KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283
                  I N   E W                 S +    I  +   +     E
Sbjct: 913 -------IQNNMQELWALLHFIMPSLFDSHDEFSDWFSKDIESHAESNTELNQE 959


>gi|328849595|gb|EGF98772.1| hypothetical protein MELLADRAFT_79606 [Melampsora larici-populina
           98AG31]
          Length = 1540

 Score = 42.6 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 39/168 (23%), Gaps = 23/168 (13%)

Query: 45  LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
           L     P  +Q E +E                     I A  G GKT +   +M W+   
Sbjct: 24  LSGNKCPRLYQEELLEE-------------AKRRNIIIRADTGTGKTLVAVLLMDWMAVQ 70

Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH---WFEMQSLSLHPSGWYAELLEQS 161
             G           Q        + +  +              +  L P  W  E     
Sbjct: 71  PKGDD----QEHTIQAFLVPTRPLVQQQASAIRSGTTLRVREYTGDLQPELWNVEKWHSD 126

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209
           +         T + + +     F      +   +  DEA         
Sbjct: 127 LKQTD-VIVCTAQIFYDILSKGFWTL--ENVSLLVFDEAHHCRKNHIY 171


>gi|305662656|ref|YP_003858944.1| DNA topoisomerase (ATP-hydrolyzing) [Ignisphaera aggregans DSM
           17230]
 gi|304377225|gb|ADM27064.1| DNA topoisomerase (ATP-hydrolyzing) [Ignisphaera aggregans DSM
           17230]
          Length = 1228

 Score = 42.6 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 39/132 (29%), Gaps = 3/132 (2%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           A+ A  GIGK+TL     L+         I  I  +    K           ++  + H 
Sbjct: 82  AMVAPTGIGKSTLLGVYALYRAY-FYRSKIYIITPTREIAKQFYSKISEYLRTISKNFHG 140

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
            +   L +      ++  +  + + +++      T S       V   ++    V  D+ 
Sbjct: 141 AD--KLRIIFYDSSSKNHKDILKLINENMFDILITSSSFLSRHHVIVDSSKIDIVIADDL 198

Query: 201 SGTPDIINKSIL 212
                       
Sbjct: 199 DSIMRNSKSVDR 210


>gi|288917812|ref|ZP_06412173.1| type III restriction protein res subunit [Frankia sp. EUN1f]
 gi|288350740|gb|EFC84956.1| type III restriction protein res subunit [Frankia sp. EUN1f]
          Length = 557

 Score = 42.6 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 51/189 (26%), Gaps = 40/189 (21%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q E  + V      +            + A  G+GKT +   ++   +S      I+
Sbjct: 143 RPYQSEAFQRVTDALDEHQ-------RALLVLA-TGLGKTVIGGEVIARHLSRHAAGRIL 194

Query: 112 CIANSE---TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            +A+++    QL+  LW  +SK               L                      
Sbjct: 195 VVAHTKELVEQLERALWFHISKGTRTQLLTGDHRPDDLR-------------------GI 235

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI-INKSILGFFTELNPNRFWIMT 227
              T  +                   V  DEA    +      +L   ++        +T
Sbjct: 236 TCATVFSALSYVRS------GYRPDLVVVDEAHHVAENGYFAELLDLLSD---VPQLGVT 286

Query: 228 SNTRRLNGW 236
           +   R + +
Sbjct: 287 ATPWRGDRY 295


>gi|239787345|emb|CAX83822.1| uncharcterized ATPase [uncultured bacterium]
          Length = 379

 Score = 42.6 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/168 (11%), Positives = 39/168 (23%), Gaps = 16/168 (9%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             IS  R  GKTT    +                A ++ Q K  + A +   L  +P   
Sbjct: 18  ILISGPRQSGKTTFAKNLFHEFEYLNYDAQNDRHAITKMQWKRNVQAVLFDELHKMPEWK 77

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
            +           +  E  +  + +         +   +     +              E
Sbjct: 78  RWLK-------GIYDTEGNKPHIIVTGSANLEIFKKAGDSLAGRYFRFRMHPIDLK---E 127

Query: 200 AS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246
           A     D + +      T       ++          +        L+
Sbjct: 128 ARLYWKDDVQEIFNRLMTVGGFPEPFL-----EGKTNFHRRWQKSHLD 170


>gi|198274912|ref|ZP_03207444.1| hypothetical protein BACPLE_01071 [Bacteroides plebeius DSM 17135]
 gi|198272359|gb|EDY96628.1| hypothetical protein BACPLE_01071 [Bacteroides plebeius DSM 17135]
          Length = 1039

 Score = 42.6 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 57/185 (30%), Gaps = 27/185 (14%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG----MSI 110
           Q + ++ +       V       F+  + A  G GKT ++A+        + G      I
Sbjct: 314 QKQILDKL------KVEREECGNFRNLVVAATGTGKTVISAFDYQSFCQQQTGVGRTSRI 367

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           +  A+ E  L+ +L    S          W   ++                   D  H  
Sbjct: 368 LFTAHREEILRQSLHTYRSVLQDANFGTLWVGNEA--------------PQTEADYAHLF 413

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
           ++   ++      F      +   +  DEA         S    F+  +P     +T+  
Sbjct: 414 VSISMFNSRFEALFSQLPADYYDYIVIDEAH---HSQADSYRKLFSHFHPQLLIGLTATP 470

Query: 231 RRLNG 235
            R++G
Sbjct: 471 ERMDG 475


>gi|94263238|ref|ZP_01287055.1| Helicase-like:Peptidase S24, S26A and S26B:Type III restriction
           enzyme, res subunit:DEAD/DEAH box helicase-like [delta
           proteobacterium MLMS-1]
 gi|93456456|gb|EAT06576.1| Helicase-like:Peptidase S24, S26A and S26B:Type III restriction
           enzyme, res subunit:DEAD/DEAH box helicase-like [delta
           proteobacterium MLMS-1]
          Length = 1196

 Score = 42.6 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 45/201 (22%), Gaps = 34/201 (16%)

Query: 34  RFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93
              P        E   +P   Q E                        + A  G+GKT L
Sbjct: 394 HALPISPGSDEQEAPPEPTELQKE------ALAALAATRREGYRRGLVVMA-TGLGKTWL 446

Query: 94  NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
            A    +         ++ +A+ E  L+                       +  L     
Sbjct: 447 AA----FDAGHCTARRVLFVAHREEILQQAA--------------------ATFLRIRPR 482

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213
                      D++   +     +  R +        H   V  DE          +   
Sbjct: 483 ARAGFYLGRQRDAEVDLLFASIQTLARSEHLARFAADHFDYVVVDEFH---HAAAATYRR 539

Query: 214 FFTELNPNRFWIMTSNTRRLN 234
                NP     +T+   R +
Sbjct: 540 LLRHFNPRFLLGLTATPERTD 560


>gi|270291373|ref|ZP_06197595.1| phage terminase, large subunit [Pediococcus acidilactici 7_4]
 gi|270280219|gb|EFA26055.1| phage terminase, large subunit [Pediococcus acidilactici 7_4]
          Length = 386

 Score = 42.6 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 33/254 (12%), Positives = 74/254 (29%), Gaps = 22/254 (8%)

Query: 44  PLEHFSQPHR---WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           P     +P +   WQ +F+ A+ +   ++      +    +++  RG GKT L A +  +
Sbjct: 88  PNVDTGEPTKLMLWQ-KFIMAMLIGWRNDDGGKRFSRAIVSVA--RGQGKTYLMAIITAY 144

Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLS--MLPHRHWFEMQSLSLHPSGWYAELL 158
                     + ++N +  + +  + + SK L            ++      +    +  
Sbjct: 145 SFLIE----SLGLSNQDYLVSSINYKQTSKILGYIKSMLAKIATIEPFKSLIADSGLDTR 200

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFT 216
             S   D    +           +      + H      DE         I+K + G   
Sbjct: 201 TLSSQSDQVVMSSNNNKLRAISHEAGQYD-SFHFTTAIFDEIGEIKTRQKISKIVSGQVK 259

Query: 217 ELNPNRFWIMTSNTRRLNGWFYDIFNIPL-------EDWKRYQIDTRTVEGIDSGFHEGI 269
             N     I T+       +  D   I          D   Y     + + ++  +   +
Sbjct: 260 VRNKQFIQISTAYPDPTVPFHDDERMIQQAMEQDYLRDADTYLGLIWSQDNLNETYKPDM 319

Query: 270 ISRYGLDSDVARIE 283
             +     D+    
Sbjct: 320 WVKSNPLLDLPNQR 333


>gi|227498391|ref|ZP_03928541.1| type III restriction system protein res subunit [Acidaminococcus
           sp. D21]
 gi|226903853|gb|EEH89771.1| type III restriction system protein res subunit [Acidaminococcus
           sp. D21]
          Length = 1063

 Score = 42.6 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/186 (11%), Positives = 57/186 (30%), Gaps = 29/186 (15%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW-MMLWLISTRPGMS 109
           P+ +Q + ++A+                +  + A  G GKT + A+    +  +      
Sbjct: 326 PYPYQEQILDALQA------ERQIHHRTRNLVVAATGTGKTAIAAFDYARFAKNRNKETR 379

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           ++ +A+ E  L  +L    S +  +L    + E+   +          +        + +
Sbjct: 380 LLFVAHREEILTQSL----SAFRQVLQDPGFGELSVGNFKAKRADHLFISIQTFQHQRLW 435

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                              + +   +  DE         + +    +   P     +T+ 
Sbjct: 436 ---------------EKLDSHYYDMIIVDEFHHAAAPSYQKL---LSYFKPRILLGLTAT 477

Query: 230 TRRLNG 235
             R++G
Sbjct: 478 PERMDG 483


>gi|94265636|ref|ZP_01289378.1| Helicase-like:Peptidase S24, S26A and S26B:Type III restriction
           enzyme, res subunit:DEAD/DEAH box helicase-like [delta
           proteobacterium MLMS-1]
 gi|93453846|gb|EAT04209.1| Helicase-like:Peptidase S24, S26A and S26B:Type III restriction
           enzyme, res subunit:DEAD/DEAH box helicase-like [delta
           proteobacterium MLMS-1]
          Length = 1196

 Score = 42.6 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 45/201 (22%), Gaps = 34/201 (16%)

Query: 34  RFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93
              P        E   +P   Q E                        + A  G+GKT L
Sbjct: 394 HALPISPGSDEQEAPPEPTELQKE------ALAALAATRREGYRRGLVVMA-TGLGKTWL 446

Query: 94  NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
            A    +         ++ +A+ E  L+                       +  L     
Sbjct: 447 AA----FDAGHCTARRVLFVAHREEILQQAA--------------------ATFLRIRPR 482

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213
                      D++   +     +  R +        H   V  DE          +   
Sbjct: 483 ARAGFYLGRQRDAEVDLLFASIQTLARSEHLARFAADHFDYVVVDEFH---HAAAATYRR 539

Query: 214 FFTELNPNRFWIMTSNTRRLN 234
                NP     +T+   R +
Sbjct: 540 LLRHFNPRFLLGLTATPERTD 560


>gi|300114986|ref|YP_003761561.1| type I site-specific deoxyribonuclease [Nitrosococcus watsonii
           C-113]
 gi|299540923|gb|ADJ29240.1| Type I site-specific deoxyribonuclease [Nitrosococcus watsonii
           C-113]
          Length = 776

 Score = 42.6 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 84/290 (28%), Gaps = 33/290 (11%)

Query: 38  WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN--- 94
           W  +   +    +   WQ  + + +    +  +        +  ++   G GKT +    
Sbjct: 133 WRNRFAEVPFEDKGGAWQARYYQEIA--INKTLEAMAVGRARILLTLATGTGKTFIAFQL 190

Query: 95  AWMML---WLISTRPGM--SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLH 149
           AW +    W +S  P     I+ +A+     +N L  +     S  P      +   ++ 
Sbjct: 191 AWKLFHSRWNLSREPNRRPRILFLAD-----RNILADQAYNAFSAFPEDALVRIDPATIR 245

Query: 150 PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209
             G   +       I      +T R  +     +F          +  DE          
Sbjct: 246 KKGRVPKNGSLFFTIFQ--TFMTGRDAAGNPAPSFGEYPPDFFDFIVIDECHRGGANDES 303

Query: 210 SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI 269
           +  G     +P     +T+  +R +    D +    E    Y +     +G  + F    
Sbjct: 304 NWRGILEYFSPAVQLGLTATPKRQSN--GDTYAYFGEPVYVYSLKEGINDGFLTPFKVKQ 361

Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319
           I+    D           +     +  I     E    R   +D +  +I
Sbjct: 362 IATTLDD-----------YVYTSDDQVIEGEIEE---GRRYTEDDFNRVI 397


>gi|222435774|ref|YP_002564202.1| gp6 [Mycobacterium phage Phlyer]
          Length = 586

 Score = 42.6 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 42/348 (12%), Positives = 77/348 (22%), Gaps = 46/348 (13%)

Query: 43  KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102
             L     P       +  +       +           ++     GK+T+ A       
Sbjct: 79  AELATAVDPEFVITPALRIISDAIEDVLRYP---RCNLLVTMPPQEGKSTMCAVWTPIRA 135

Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
                   I +A     L +         +          +  L++          +   
Sbjct: 136 LQLNPNRRIILATYGDSLADQHSTTARDLIMRYGTGVTDALTGLAVEDKLGLKINPK--- 192

Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND-------EASGT--PDIINKSILG 213
                 + I                          D       EA      + +N+    
Sbjct: 193 QAKVSSWRIDGAIGGMVAAGLGSAITGKSADLFIIDDPFKNMIEADSARHREKVNEWFAS 252

Query: 214 FFTEL-NPNRFWIMTSNTRRLNGWFYDIFNIPL-EDWKRYQIDTRTVEGIDSGFHEGIIS 271
             +   +P    I+             I       D +        V  +        + 
Sbjct: 253 VASTRLSPEASMILIQTRWHPEDLSGTIIAGEKLLDAEDRTWRHINVPAVSEEGIPDALG 312

Query: 272 RYGLDSDV--ARIEILGQF-------------------PQQEVNNFIPHNYIEEAMSREA 310
           R      +  AR   L +F                   P+          + E    R  
Sbjct: 313 RPEPGIPMISARGRTLREFNQTRKSVGERVWYALYQGSPRNPAGGLFMRAWFEPMAER-- 370

Query: 311 IDDLYAPLIMGCDIAGEG-GDKTVVV----FRRGNIIEHIFDWSAKLI 353
             +     I+  D A  G GD+T ++     R G I+    DWS +L 
Sbjct: 371 SPERPLATIVAIDPADSGEGDETGIIGGMLDRDGTIVLT-DDWSDQLT 417


>gi|239825924|ref|YP_002948548.1| type III restriction protein res subunit [Geobacillus sp. WCH70]
 gi|239806217|gb|ACS23282.1| type III restriction protein res subunit [Geobacillus sp. WCH70]
          Length = 1053

 Score = 42.6 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 60/189 (31%), Gaps = 33/189 (17%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
           H  +P+  Q + +  +     +  N       K  I A  G GKT L+A    + +    
Sbjct: 302 HSIKPNAMQEKALRNLQHTRKNGNN-------KGVIIAATGTGKTYLSA----FDVKAFN 350

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
              ++ IA+ E  L N     +  +  ++P +  F   + ++                  
Sbjct: 351 PKKLLFIAHREELLDNA----IKTFQQVIPKKEIFGKITGTVKEFDKP------------ 394

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
               +     S  + +            +  DE         + ++ +F    P     +
Sbjct: 395 ---YLFSTVQSLHKDEILKRFKRDEFDYIIIDEFHHAEAPTYRKVIDYF---QPKFLLGL 448

Query: 227 TSNTRRLNG 235
           T+   R++G
Sbjct: 449 TATPERMDG 457


>gi|56419950|ref|YP_147268.1| hypothetical protein GK1415 [Geobacillus kaustophilus HTA426]
 gi|56379792|dbj|BAD75700.1| hypothetical protein [Geobacillus kaustophilus HTA426]
          Length = 1255

 Score = 42.6 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 52/345 (15%), Positives = 90/345 (26%), Gaps = 40/345 (11%)

Query: 2    PRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFP-W-GIKGKPLEHFSQPHRWQLEFM 59
            PR++   Q+L+QE H +L   + +     +   F P W   + K L   S   + Q +  
Sbjct: 740  PRVLQALQQLDQENHRIL---DLIRDPIRYRKTFRPNWDAEEVKALLRRSGLTKSQRQAF 796

Query: 60   EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM----SIICIAN 115
                 H                +    G GKT   A  +  L+          +I+    
Sbjct: 797  LQFLRHTL------------TLVWGPPGTGKTHFIAVALRLLMEMYEKRGRRLAILVSGF 844

Query: 116  SETQLKNTLWAEVSKWLSMLPH-RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            +   ++N L            H     E+Q+ +       A+        +  H  +   
Sbjct: 845  THAAIENVLRKIQELAPRRSVHIAKLGEIQTENAKGIAEVADRDLPRWLGNGGHRVLGAT 904

Query: 175  TYSEERPDTFVGPHNTHGMAVFNDEASGT-------PDIINKSILGFFTELN----PNRF 223
             Y  +R              V  DEAS              K         +    P   
Sbjct: 905  LYGIQRAYEKDCL--EEFDVVILDEASQIRVADSLLAQRHVKKAGRLLIVGDHFQLPPII 962

Query: 224  WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283
                +        F  IF +  +      ++ R    +   F             +   +
Sbjct: 963  QGAYAAAEGEPHLFDSIFRLLFDA----DVEKRYTRQLTDNFRMNEALCRYPADRIYGRD 1018

Query: 284  ILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGC-DIAGE 327
                  Q         +        EA  D   PL++   D A  
Sbjct: 1019 YTAFNRQIAEQTLALVDAPTADEWVEAAIDPDYPLVVCVYDGAHG 1063


>gi|198430493|ref|XP_002126334.1| PREDICTED: similar to activating signal cointegrator 1 complex
            subunit 3-like 1 [Ciona intestinalis]
          Length = 2143

 Score = 42.6 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/220 (10%), Positives = 46/220 (20%), Gaps = 28/220 (12%)

Query: 47   HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
             F   +  Q +   A+                   + A  G GKT    + +L  ++  P
Sbjct: 1328 DFPCFNPIQTQVFNAIYNGDE-----------NVFVGAPTGSGKTVCAEFALLHALNLDP 1376

Query: 107  GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
                + +   E             W         FE+               +  +   +
Sbjct: 1377 DSRCVYVTPVEAVADLIY----KDWRKK------FEVSLGKRVVLLTGETSTDLRLISRA 1426

Query: 167  KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL-------GFFTELN 219
                 T   +           +         DE           +           ++L+
Sbjct: 1427 SIIIATSERWDVISRRWKQRKNVHTVSLFIVDEIHLIGGESGPELEVVCSRMRYIASQLD 1486

Query: 220  PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
             N   I   ++                    +  + R V 
Sbjct: 1487 KNIRIIALGSSLANAKDVAQWLGCTNMHTFNFHPNVRPVP 1526


>gi|170593409|ref|XP_001901457.1| Hypothetical UPF0202 protein F55A12.8 in chromosome I [Brugia
           malayi]
 gi|158591524|gb|EDP30137.1| Hypothetical UPF0202 protein F55A12.8 in chromosome I, putative
           [Brugia malayi]
          Length = 1041

 Score = 42.6 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 46/168 (27%), Gaps = 18/168 (10%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
              Q + +  +          S      C I+A RG GK+ +   + +         +I 
Sbjct: 256 TLCQAKTLLKLLDVITEKTLQST-----CCITAARGRGKSAVL-GLAIAGAIGFDYANIF 309

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             + +   LK  L+  V K L  + +    + +              +Q      +    
Sbjct: 310 VTSPAPDNLKT-LFEFVVKGLEAMNYEEHTDFE--------LIQSTNKQYNKALVRISIF 360

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
                  +  D       +    V  DEA+  P      +    +   
Sbjct: 361 KGHRQVIQYIDPXDSVKLSQAELVVVDEAAAIP---FPIVKNLISGPY 405


>gi|257468550|ref|ZP_05632644.1| putative phage terminase, large subunit [Fusobacterium ulcerans
           ATCC 49185]
 gi|317062808|ref|ZP_07927293.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
 gi|313688484|gb|EFS25319.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
          Length = 568

 Score = 42.2 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 36/309 (11%), Positives = 79/309 (25%), Gaps = 58/309 (18%)

Query: 69  NVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127
               +    F+ A I  GR  GK+ L+     +  S       I  A ++ +  N +W +
Sbjct: 84  RRKRTKERRFREAYIQVGRRNGKSFLSGEQATFFSSYLGMKDRIFCAATKQEQANIVWDD 143

Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187
           +  ++            S       +  +  ++++        I       +  D F   
Sbjct: 144 IRNFIE-----------SDVDLIELYKVKEHDRTIKSLITDTVIKSLGRDTKSMDGFGNI 192

Query: 188 HNTHGMAVFNDEASGTPDIIN------------KSILGFFTELN---------------- 219
                     DE    P+                ++    T                   
Sbjct: 193 ------LAICDELHAHPNNQMYKLLLDGQADVDNALTLAITTAGFNLNSFCYEHYQFCEK 246

Query: 220 -------PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE---GI 269
                      +I      + +  +     +    +  +  D    E   + + E     
Sbjct: 247 ILEGLVDKESLFIFICEMDKDDDIWEPKNWLKANPYFLFNEDGTINEKKLARYAEKAIDA 306

Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA-MSREAIDDLYAPLIMGCDIAGEG 328
             + G D      + L  +   +   +I     +         D       +G D++ +G
Sbjct: 307 KEKGGEDLTNFLTKQLNMWVTAKGGQYIDLAKFKSCESELTLKDMKGRKAYLGFDLS-KG 365

Query: 329 GDKTVVVFR 337
           GD T +   
Sbjct: 366 GDLTSIALI 374


>gi|238920914|ref|YP_002934429.1| ATP-dependent RNA helicase SrmB [Edwardsiella ictaluri 93-146]
 gi|238870483|gb|ACR70194.1| ATP-dependent RNA helicase SrmB [Edwardsiella ictaluri 93-146]
          Length = 448

 Score = 42.2 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 51/216 (23%), Gaps = 20/216 (9%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
           SA  G GKT       L  +   P        ++ +  +                     
Sbjct: 47  SAPTGTGKTAAFLLPALQHLLDFPRKKSGPPRVLILTPTRELAMQV----------ADQA 96

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
           R      SL +         +  +   ++    +        +              +  
Sbjct: 97  RELARHTSLDITTITGGVSYINHAEIFNTNQDLVVATPGRLLQYIKEENFDCRAVETLIL 156

Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257
           DEA    D+   S +   +     R   +  +    +   +D     L D       +  
Sbjct: 157 DEADRMLDMGFASDIETVSAETRWRRQTLLFSATLESDAVHDFAARLLNDPVDV---SAE 213

Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293
               +    +     Y  DS   +  +L    +Q  
Sbjct: 214 PPRRERKKIQQW--YYRADSLKHKTALLCNLLRQPD 247


>gi|145341798|ref|XP_001415990.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576213|gb|ABO94282.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 663

 Score = 42.2 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/257 (12%), Positives = 65/257 (25%), Gaps = 18/257 (7%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
               +   +Q E ++ +  +  +                  G+GKT     ++   +  R
Sbjct: 186 GESDELRSYQKEGVKWMAFNFRAGRGCILADEM--------GLGKTAQALALIHHCLQVR 237

Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS--GWYAELLEQSMG 163
           PG+  + +    T +      E  +W+           Q+         WY  + E    
Sbjct: 238 PGLPALVVVPLSTIVN--WEREAQRWVPDAYVVTHVGKQAGREFAREHDWYHPVDETQSI 295

Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
             +    I   TY     D            +  DEA      +   +      L   R 
Sbjct: 296 SRAFKANIVLTTYETITADR-QSFAKAKWSTMVVDEAHRLK-RVGGKLGNDLNSLAVERI 353

Query: 224 WIMTSNT---RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLD-SDV 279
            ++T           W    F          + +        +   E +    G      
Sbjct: 354 CLLTGTPLQNNTTELWSLLNFVDSKHFSNAEEFEEAFGGMAKAAQVERLQKVLGPYLLRR 413

Query: 280 ARIEILGQFPQQEVNNF 296
            + ++  + P +     
Sbjct: 414 LKRDVEQKLPPRSETLV 430


>gi|146104782|ref|XP_001469910.1| helicase [Leishmania infantum]
 gi|134074280|emb|CAM73025.1| putative helicase [Leishmania infantum JPCM5]
          Length = 1285

 Score = 42.2 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 64/243 (26%), Gaps = 24/243 (9%)

Query: 43  KPLEHFSQP-HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101
              E   +P   +Q   +  +     +N+N               G+GKT     ++ + 
Sbjct: 255 LDTEGGQRPLRHYQRSALRWMVHLYENNLNGILADEM--------GLGKTVQTIALLCYF 306

Query: 102 ISTRPGMSI-ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
                     + +  +   L     AE+ +W   L    +             +      
Sbjct: 307 AEYHNDWGPHLIVVPTTVVLN--WKAELERWSPGLKVLTYIGSTKERHLLRKGWT----- 359

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220
                S+     C T                   +  DEA    +           +L  
Sbjct: 360 -----SEDAFHVCVTSYNLVVQDRKAFRRRPWGFLVLDEAHHVKN-FMSLKWQSLFDLQA 413

Query: 221 NRFWIMTSNT-RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279
               ++T    +      + +F+  L     ++ +    E   +   E I  R  L+ D+
Sbjct: 414 EYRLLLTGTPLQNSIMELWSLFHFLLPFASAFRSNAEFKEWFSNPMDEMITGRSTLNEDI 473

Query: 280 ARI 282
            R 
Sbjct: 474 VRR 476


>gi|260942529|ref|XP_002615563.1| hypothetical protein CLUG_04445 [Clavispora lusitaniae ATCC 42720]
 gi|238850853|gb|EEQ40317.1| hypothetical protein CLUG_04445 [Clavispora lusitaniae ATCC 42720]
          Length = 819

 Score = 42.2 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 55/184 (29%), Gaps = 7/184 (3%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G+GKT     + +  +S RP + +        Q KN + A   +    +   H    +S 
Sbjct: 236 GMGKTIQTIALFMNDLSKRPNLVVGPTVA-LMQWKNEIEAHTHEGKLKVLLFHGANRESD 294

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                 +   L   S+   S           +         H      V  DEA    D 
Sbjct: 295 IKELEKYDVILTSYSVLESSYRKERYGFKRKDGVVKQKSPLHALKFYRVILDEAHNIKDR 354

Query: 207 INKSILGFFTELNPNRFWIMTSNT-RRLNGWFYDIFNIPLED----WKRYQIDTRTVEGI 261
            + +      +LN  + W +T    +   G  Y +      D    +   +    + E  
Sbjct: 355 TSGTAKAA-NDLNCEKRWCLTGTPLQNRIGEMYSLIRFMKLDPFYKYFCTKCPCSSSEWK 413

Query: 262 DSGF 265
            S +
Sbjct: 414 FSDW 417


>gi|110680616|ref|YP_683623.1| UvrD/REP helicase, putative [Roseobacter denitrificans OCh 114]
 gi|109456732|gb|ABG32937.1| UvrD/REP helicase, putative [Roseobacter denitrificans OCh 114]
          Length = 549

 Score = 42.2 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 34/259 (13%), Positives = 72/259 (27%), Gaps = 27/259 (10%)

Query: 77  IFKCAISAGRGIGKTTLNAW---MMLWLISTRPGMSIICIA-------NSETQLKNTLWA 126
               A++AG G GKT + A     +L   + R    I+ I+       N + +++     
Sbjct: 27  ARNLALTAGPGAGKTEMLAQRADFLLRTGTCRYPRRILAISFKTDASQNLKARVRKRCGP 86

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
            ++          + +       P     + L     I  +       T+++  P     
Sbjct: 87  GLAARFDSYTFHAFAKRIIDRFRPVLSGRDALNPDYSIGPRRVQHQSITFADMVPLACKI 146

Query: 187 PH---------NTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
                            VF DE     D   + IL  F   +         +T++    +
Sbjct: 147 IEDSLVARNAVRQTYSHVFLDEFQDCTDEQYRLILASF--GDTPTILTAVGDTKQSIMGW 204

Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297
                     +  +      +            +   + + + ++      P    +  I
Sbjct: 205 A---GALEGIFHTFADAFDALPRNLYQNFRSAPALRRMQNAMVKVM---DPPAALDDADI 258

Query: 298 PHNYIEEAMSREAIDDLYA 316
             +  E  + R   DD  A
Sbjct: 259 IGDEGEICILRFEDDDDEA 277


>gi|291460281|ref|ZP_06599671.1| putative helicase [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417036|gb|EFE90755.1| putative helicase [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 1194

 Score = 42.2 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 54/172 (31%), Gaps = 11/172 (6%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS-IICIANSETQLKNTLWAEVSKW- 131
                +  ++   G+GKT   A ++L  +  R  ++ ++ I       +     E+ ++ 
Sbjct: 285 QADSPRVLVADDVGVGKTI-EAGLILKELEARSSLTSVLVICPRPLVAERKWQLEMKRFD 343

Query: 132 --LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS-KHYTITCRTYSEERPDTFVGPH 188
              + L  R   E  S +     W     +  +        +I  R     +    +G  
Sbjct: 344 EDFTQLDGRMLAECISETDRDGEWPERHSKTIIPYSLFGEDSIMGRGSRSGKKHKDIGLS 403

Query: 189 ----NTHGMAVFNDEASGTPDIINKSILGF-FTELNPNRFWIMTSNTRRLNG 235
                 H   V  DEA    +    +  G      N +    +T+   + + 
Sbjct: 404 ELDPLPHFDLVIVDEAHNIRNANTWAYRGVELFCRNADAVVFLTATPLQNSN 455


>gi|227504932|ref|ZP_03934981.1| superfamily II DNA/RNA helicase [Corynebacterium striatum ATCC
           6940]
 gi|227198441|gb|EEI78489.1| superfamily II DNA/RNA helicase [Corynebacterium striatum ATCC
           6940]
          Length = 1243

 Score = 42.2 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 31/202 (15%)

Query: 21  HAECVLSFKNFVMRFFPWGIKGKPLEHFS--QPHRWQLEFM-EAVDVHCHSNVNNSNPTI 77
            A    S  N+    FP       L       P   Q E + +A+      +        
Sbjct: 148 TAAIAESPINW-DVTFPGSEIEINLTRREVFSPRPHQQEAISKAIAGFETHDRGK----- 201

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGM-SIICIANSETQLKNTLWAEVSKWLSMLP 136
               I A  G GKT     +         G   ++ +  S + L  TL    ++    LP
Sbjct: 202 ---LIMAC-GTGKTFTALRLAEQYAENNGGRARVLFLVPSISLLSQTLKEWTAQNQEHLP 257

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP----------DTFVG 186
            + +       +          +  + + +    I  RT   +R            +   
Sbjct: 258 LKSYAVCSDTKVSKKAEDIASYDLEVPVSTNGKNIAERTAQGKRRAGINVIFSTYQSIEA 317

Query: 187 PH-------NTHGMAVFNDEAS 201
            H             V  DEA 
Sbjct: 318 IHEAQAEYGMDDFDLVICDEAH 339


>gi|126272592|ref|XP_001369134.1| PREDICTED: similar to hCG32858 [Monodelphis domestica]
          Length = 1407

 Score = 42.2 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 58/207 (28%), Gaps = 17/207 (8%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + +L+      E+    ++   E    F  ++    P   K          ++ Q + M+
Sbjct: 569 LSKLMENTPVSEKLRDLIIDFREPQ--FIQYLSSVLPHEAKDTVANILKGLNKPQRQAMK 626

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            V               +   +    G GKTT    ++  L +   G S++  + + + +
Sbjct: 627 KV----------LLSKDYTLIVGMP-GTGKTTTICALVRILYAC--GFSVLLTSYTHSAV 673

Query: 121 KNTLWAEVSKWLSMLPHRHWFEM--QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
            N L   +   +  L      ++              E   +S+    + Y       + 
Sbjct: 674 DNILLKLMKFKVGFLRLGQTQKVHPNIQKFTEEEICREKSIKSLTSLEELYNSQPIVATT 733

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPD 205
                              DEAS    
Sbjct: 734 CMAINHPIFSRKRFDFCIVDEASQISQ 760


>gi|300362646|ref|ZP_07058822.1| helicase [Lactobacillus gasseri JV-V03]
 gi|300353637|gb|EFJ69509.1| helicase [Lactobacillus gasseri JV-V03]
          Length = 957

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 57/184 (30%), Gaps = 32/184 (17%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P++ Q E +  +D               +  + +  G GKT L A+ +            
Sbjct: 223 PNQMQKEALANLDALVKEQAK-------RALVVSATGTGKTYLGAFAV----KEYKPKKF 271

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + + + E   K  L  E    +     R +  +                     D K+  
Sbjct: 272 LYLVHREQIAKKAL--ESFYQVIGGKKRDYGLLTGNK--------------HDFDKKYLF 315

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
            T +T S+E+       +      +  DEA        + IL  FT   P     MT+  
Sbjct: 316 GTVQTVSQEQI--LGQLNPEEFDYILIDEAHRVAAPTYQKILNHFT---PKFLLGMTATP 370

Query: 231 RRLN 234
            R++
Sbjct: 371 ERMD 374


>gi|172055098|ref|YP_001806425.1| putative helicase [Cyanothece sp. ATCC 51142]
 gi|171701379|gb|ACB54359.1| putative helicase [Cyanothece sp. ATCC 51142]
          Length = 517

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/190 (11%), Positives = 55/190 (28%), Gaps = 40/190 (21%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q + +++V     ++         +  + AG G GKT + + +    +       ++
Sbjct: 14  RPYQADVVKSVHQQLKTDQ--------RVLVVAGTGAGKTVIASHLTQDFLLQN--KKVL 63

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            + +     ++ L  +  K  + LPH        L+L       ++             +
Sbjct: 64  FLVH-----RDILVKQTVKKFAHLPHGIIAGRNPLNLSQ---PLQVASVQTLGRKGIEWL 115

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN----KSILGFFTELNPNRFWI-M 226
                           H+     V  DE+            +         +     I +
Sbjct: 116 N---------------HHFPFHVVIFDESHL--TNWFKFSLQLFPPLPLSSDKKTLCIGL 158

Query: 227 TSNTRRLNGW 236
           T+   R + +
Sbjct: 159 TATPWRRSKY 168


>gi|317490974|ref|ZP_07949410.1| terminase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920521|gb|EFV41844.1| terminase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 590

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 39/358 (10%), Positives = 80/358 (22%), Gaps = 62/358 (17%)

Query: 38  WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97
           +               W  E +     H   N+  +        I   R IG T   A+ 
Sbjct: 126 YRKNDISSLTQEDFDTWADEHLFGYQKHLRLNIAQTVRN-----ILKSRQIGATWYFAFE 180

Query: 98  MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
                       I   A+          AEV +   +   + +F +              
Sbjct: 181 AFENAVLTGDPQIFLSASKAQ-------AEVFRSYIVNIAQQYFGIDLTGNPIRLSNGAE 233

Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217
           L       +   + +   Y +E        H         +E +      +K    +F+ 
Sbjct: 234 LRFLSTNKNTAQSYSGHLYCDEYFWVPNFTH--------LNEVASAMATHDKWRTTYFST 285

Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPL-----EDWKRYQIDTRTVEGIDSGFHEGIISR 272
            +               G  +   +         ++   +   R        +   +   
Sbjct: 286 PSAKTHQAY----PFWTGEEWKRGSKKRAKVKFPEFDELRDGGRECPDGQWRYIITMEDA 341

Query: 273 YGLDSDVARIE--------------ILGQFPQQEVNNFIPHNYIEEA-MSREA------- 310
                ++A IE               +  F     +       +E   + R+        
Sbjct: 342 IRGGFNLADIERLRNRYNDSTFAMLYMCVFVD-SKDAVFSFEDLERCGVDRDIWQDFDIK 400

Query: 311 --IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNI-------IEHIFDWSAKLIQETNQE 359
                    +  G D A  G D +        +       +  I +W     +    E
Sbjct: 401 LKRPFGDREVWAGYDPARSG-DLSTFAVLAPPVLAVEKFRVLEIVNWHGMSFRWQANE 457


>gi|307197874|gb|EFN78973.1| Activating signal cointegrator 1 complex subunit 3 [Harpegnathos
            saltator]
          Length = 2132

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 45/175 (25%), Gaps = 21/175 (12%)

Query: 45   LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            L  FS  +  Q +    +    +              + A  G GKT      M  +   
Sbjct: 1286 LYPFSHFNPIQTQIFYCLYHTDN-----------NVLLGAPTGSGKTIAAEIAMFRVFKR 1334

Query: 105  RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
             PG  I+ IA  +  ++      ++ W   L  R                    +  M I
Sbjct: 1335 YPGKKIVYIAPLKALVRER----INDWKIRLEERL------GKRVVELTGDVSPDIKMII 1384

Query: 165  DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
            D+     T   +           +      +  DE     +     +    +  N
Sbjct: 1385 DAHVIVTTPEKWDGISRSWQTRSYVRQVALIVIDEIHLLGEDRGPVLEVIISRTN 1439


>gi|154300125|ref|XP_001550479.1| hypothetical protein BC1G_10438 [Botryotinia fuckeliana B05.10]
 gi|150856727|gb|EDN31919.1| hypothetical protein BC1G_10438 [Botryotinia fuckeliana B05.10]
          Length = 1398

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 48/152 (31%), Gaps = 21/152 (13%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI-STRPGMS 109
           P  +QLE +E                     ++   G GKT +    +L  +   +PG  
Sbjct: 73  PRTYQLEMLEE-------------SLKRNVIVAMDTGSGKTHVAVLRILAELERMKPGKI 119

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I  +A +       L A+  ++L +       +M   +     W  +    ++  D K  
Sbjct: 120 IWFLAPTVA-----LCAQHHEYLQLNIPSVLIKMLIGADGVDRWTEQRQWDTVLKDVKVV 174

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
             + +   +     F          +  DEA 
Sbjct: 175 VSSYQVLLDALTHGF--VRMGRLSLIIFDEAH 204


>gi|57640405|ref|YP_182883.1| reverse gyrase [Thermococcus kodakarensis KOD1]
 gi|73914060|sp|Q6F598|RGYR_PYRKO RecName: Full=Reverse gyrase; Includes: RecName: Full=Helicase;
           Includes: RecName: Full=Topoisomerase; Contains:
           RecName: Full=Pko r-Gyr intein
 gi|49532704|dbj|BAD26706.1| reverse gyrase [Thermococcus kodakaraensis]
 gi|57158729|dbj|BAD84659.1| Reverse gyrase [Thermococcus kodakarensis KOD1]
          Length = 1711

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 38/132 (28%), Gaps = 7/132 (5%)

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126
                         +I A  G+GK+T  A+M +W      G     +  +   +  T+  
Sbjct: 89  QRTWVKRLLKGRSFSIIAPTGMGKSTFGAFMAVWHAL--KGKKSYIVVPTTPLVIQTV-R 145

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
           ++   +              +L       E  E    I ++ Y I   +      +    
Sbjct: 146 KIEGIMENANADVRLAYYHGNLRKK----EKEEMLERIKNEDYDILVTSAQWLARNYEEV 201

Query: 187 PHNTHGMAVFND 198
               H   +F D
Sbjct: 202 LKGRHFDFIFVD 213


>gi|313202776|ref|YP_004041433.1| methylmalonyL-CoA mutase metallochaperone meab [Paludibacter
           propionicigenes WB4]
 gi|312442092|gb|ADQ78448.1| methylmalonyl-CoA mutase metallochaperone MeaB [Paludibacter
           propionicigenes WB4]
          Length = 369

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 30/251 (11%), Positives = 72/251 (28%), Gaps = 13/251 (5%)

Query: 62  VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121
           +                +  I+   G GK+T    + + L+  +  ++++ I  S  + K
Sbjct: 77  IAQEVIEKCLPYAGNAVRLGITGVPGAGKSTFIEALGMHLVRNKHKLAVLAIDPSSERSK 136

Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
            ++  + ++   +   ++ F   S S    G  A    +S+ +       T    +    
Sbjct: 137 GSILGDKTRMEELSVAKNAFIRPSPSAGSLGGVARKTRESIILCEAAGFDTIFVETVGVG 196

Query: 182 DTFVGPHNTHGMAVFN------DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
            +    H+     +        DE  G    I +   G                 +    
Sbjct: 197 QSETSVHSMVDFFLLIQLAGTGDELQGIKRGIMEMADGIAINKCDGTNVDKARVAKSQYQ 256

Query: 236 WFYDIFNIPLEDW--KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293
               +F      W  +     +  + GI   +         + S+        +F +   
Sbjct: 257 NALHLFPPHDSGWSPEAITCSSVELNGIPEVWDMVERYVKFVKSNDY-----FEFKRNSQ 311

Query: 294 NNFIPHNYIEE 304
           + +  +  I E
Sbjct: 312 SKYWMYETINE 322


>gi|307318836|ref|ZP_07598268.1| protein of unknown function DUF264 [Sinorhizobium meliloti AK83]
 gi|306895557|gb|EFN26311.1| protein of unknown function DUF264 [Sinorhizobium meliloti AK83]
          Length = 477

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 61/262 (23%), Gaps = 29/262 (11%)

Query: 83  SAGRGIGKTTLNAWMML---------WLISTRPGMSIICIA--NSETQLKNTLWAEVSKW 131
            AG  +GKT   A             W    R    I+ +A   S    ++ +   +   
Sbjct: 63  MAGNQLGKTLAGAAEAAMHLTGRYPDWWQGRRFDRPIVMLAGSESYELTRDGVQRLL--- 119

Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
           +    H   +    L              S  +DS          S      +       
Sbjct: 120 IGPPLHEEEWGTGFLPKAAIKATTRRAGASGALDSVTVRHVSGRASTLLFKAYEQGRAKW 179

Query: 192 ----GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLE 246
                  V+ DE    P+ +     G            +T    R        +      
Sbjct: 180 QANTVDYVWFDEEP--PEDVY--FEGITRTNATRGAIAVTFTPLRGLSAVVARYLMEKSP 235

Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306
           D     +     E       + +I  Y      AR       P        P    EE++
Sbjct: 236 DRAVITMTIEDAEHYTPQERQRVIDSYPAHEREARTRG---VPALGSGRIFP--VTEESI 290

Query: 307 SREA-IDDLYAPLIMGCDIAGE 327
             +      +   I G D   +
Sbjct: 291 RIDPFEIPKHWVQIGGLDFGWD 312


>gi|123456065|ref|XP_001315771.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
 gi|121898458|gb|EAY03548.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
          Length = 876

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 40/174 (22%), Gaps = 25/174 (14%)

Query: 42  GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101
           G P    ++   WQ E ++           N       C   A    GKT +    +  L
Sbjct: 32  GIPPPAITKLREWQTELLK----------TNDWAQRKSCVCVAPTSGGKTLIAEIAISQL 81

Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
           +   P   II                  ++                   +   ++    S
Sbjct: 82  LDDNPHAKIIYALPFVALASEKFLDFEKRFRK---------YTVRPFFQNIGGSDFRTGS 132

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
           +         T         ++    ++     V  DEA    D     +    
Sbjct: 133 I------AICTYEKAHSILNNSIKTGYHQDIKLVIIDEAHMIGDESRGVVAEAL 180


>gi|255590727|ref|XP_002535346.1| conserved hypothetical protein [Ricinus communis]
 gi|223523385|gb|EEF27037.1| conserved hypothetical protein [Ricinus communis]
          Length = 799

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/116 (10%), Positives = 25/116 (21%), Gaps = 9/116 (7%)

Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-DWKRYQIDTRTVEGIDSGFHEGIISRYG 274
           +    +  W    N        Y  F      + +  +++       ++      +    
Sbjct: 375 SGKETSEIWFSM-NPELDTDPVYTTFIQKRPANARIIEVNWDRNPFWNAAMEAERLRSKA 433

Query: 275 LDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI-------MGCD 323
            D D       G                  A        L  P++       +G D
Sbjct: 434 DDPDDYDHIWEGIPRSAVAGAIYRREMHVIATENRIRPLLADPVLGTHAVFDLGID 489


>gi|172039764|ref|YP_001799478.1| putative helicase [Corynebacterium urealyticum DSM 7109]
 gi|171851068|emb|CAQ04044.1| putative helicase [Corynebacterium urealyticum DSM 7109]
          Length = 969

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 54/201 (26%), Gaps = 32/201 (15%)

Query: 35  FFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN 94
            +       P  +  +P+  Q+E +E +      N   S     +  + +  G GKT L 
Sbjct: 200 VYVPKHGAVPAGNVIEPNAMQVEALENI------NRLRSQGEQ-RALVISATGTGKTILG 252

Query: 95  AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWY 154
           A  +     +      + + ++E  L                      +    +  +G  
Sbjct: 253 ALAV----RSANPKKFLFLVHTEQIL------------------DRAMLDFQKVLGAGPE 290

Query: 155 AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF 214
                     +           S  RP+        +   +  DE           I+  
Sbjct: 291 EFGKFAGSSRELGKRYTFATIASLSRPENLYKLSQDYFDFIIVDEVHRAEAATYVRIIEH 350

Query: 215 FTELNPNRFWIMTSNTRRLNG 235
                P+    +T+   R +G
Sbjct: 351 L---KPDFLLGLTATPERTDG 368


>gi|156839586|ref|XP_001643482.1| hypothetical protein Kpol_489p5 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114095|gb|EDO15624.1| hypothetical protein Kpol_489p5 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 1048

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 46/168 (27%), Gaps = 28/168 (16%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR----PGMSI 110
           Q E    +                 C IS+  G GKT L    +L L+         + I
Sbjct: 2   QSEAFRYIYDTDE-----------NCVISSPTGSGKTVLFELAILRLLRDNNYSADNIKI 50

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + IA +    K+  + +   W S   +     + S + +         E     ++    
Sbjct: 51  LYIAPT----KSLCYEQSKNWSSKFLNLSVGMLTSDTSYS--------ETDKVRNANIII 98

Query: 171 ITCRTYSEERPDTFVGPHNTHGM-AVFNDEASGTPDIINKSILGFFTE 217
            T   +                +  +  DE     +    ++    T 
Sbjct: 99  TTPEKWDLLTRKWEDYKRLFELVKLILVDEIHMLKERRGSALEVVLTR 146


>gi|50843064|ref|YP_056291.1| phage-associated protein [Propionibacterium acnes KPA171202]
 gi|50840666|gb|AAT83333.1| conserved phage-associated protein [Propionibacterium acnes
           KPA171202]
 gi|315106939|gb|EFT78915.1| protein, SNF2 family [Propionibacterium acnes HL030PA1]
          Length = 458

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 56/192 (29%), Gaps = 28/192 (14%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG--M 108
           PH +Q      +  H  +            AI  G G+GK+ +     +W +        
Sbjct: 5   PHNYQQTATRFILDHHEA------------AILLGMGLGKSVIT-LTAIWQLLLDYFTVS 51

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            ++ +A      ++T  AEV+KW  +        + + +          +   +  ++  
Sbjct: 52  RVLVVAP-LRVARDTWPAEVAKWDHLQGLSVAVAVGTKADRLDALAKSAMVTVINRENIP 110

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
           + +     S                 V  DE S   +   K            + W+  +
Sbjct: 111 WLVRQYGDS------------WPFDMVVIDELSSFKNHRAKRFTALVKMRPHVKRWVGLT 158

Query: 229 NTRRLNGWFYDI 240
            T   NG     
Sbjct: 159 GTPASNGLMDIW 170


>gi|302874456|ref|YP_003843089.1| PhoH family protein [Clostridium cellulovorans 743B]
 gi|307690937|ref|ZP_07633383.1| PhoH family protein [Clostridium cellulovorans 743B]
 gi|302577313|gb|ADL51325.1| PhoH family protein [Clostridium cellulovorans 743B]
          Length = 458

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 54/208 (25%), Gaps = 15/208 (7%)

Query: 35  FFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN 94
             P   K        Q +  Q   +EA+                   I    G  KT  +
Sbjct: 221 IVPLYNKDIVPFGIKQRNAGQRFMLEALAT--------DASKAPLVIIKGPAGTAKTLFS 272

Query: 95  AWMMLWLISTRPGMS---IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151
             + L  I  +       I+    +   +   L          +       + +L +   
Sbjct: 273 LAVGLHEILEQEDKKYRKILVCRPN-VTMDEELGFLPGTEQDKIAPYMRPVLDNLEILVD 331

Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211
               E  +    +  K   +  R         ++   +     V  DEA        K+I
Sbjct: 332 SDEKERYKNEKELSDKVSELFDRKIITTEAVAYLRGRSIVKNWVIIDEAQNLSPKQVKAI 391

Query: 212 LGFFTELNPNRFWIMTSNTRRLNGWFYD 239
               T +      I+  +  +++  F D
Sbjct: 392 ---ITRVGVGTKLILIGDPEQIDNPFLD 416


>gi|333010190|gb|EGK29625.1| phage terminase large subunit domain protein [Shigella flexneri
           K-272]
 gi|333021147|gb|EGK40404.1| phage terminase large subunit domain protein [Shigella flexneri
           K-227]
          Length = 235

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 313 DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
           +      +G D+A  G DK   V+R G+++    +W AK
Sbjct: 10  EPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAK 48


>gi|323691318|ref|ZP_08105593.1| PhoH family protein [Clostridium symbiosum WAL-14673]
 gi|323504658|gb|EGB20445.1| PhoH family protein [Clostridium symbiosum WAL-14673]
          Length = 473

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/178 (10%), Positives = 47/178 (26%), Gaps = 7/178 (3%)

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG---MSIICIANSETQLK 121
                +           +    G  KT  +  + L  +   P      I+    +     
Sbjct: 258 FLQEALMQPADKAPLVIVKGMAGTSKTFYSLAVGLEKLVNNPNGEYRRILISRPNAQFDT 317

Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
           +  +   ++   + P      + +L         +       +  K   I  R   +   
Sbjct: 318 DIGFLPGNEQEKISPL-MRPIIDNLEQLIDSSEEQRYSNEKELSDKIQEIFDRGLIQTEA 376

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
             ++   +     +  DEA          + G  T    +   I+  +  +++  + D
Sbjct: 377 LNYIRGRSIVKTYLIIDEAQNMTPNQ---VKGIITRAGKDTKIILLGDPNQIDRPYLD 431


>gi|323483237|ref|ZP_08088628.1| hypothetical protein HMPREF9474_00377 [Clostridium symbiosum
           WAL-14163]
 gi|323403510|gb|EGA95817.1| hypothetical protein HMPREF9474_00377 [Clostridium symbiosum
           WAL-14163]
          Length = 378

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/178 (10%), Positives = 47/178 (26%), Gaps = 7/178 (3%)

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG---MSIICIANSETQLK 121
                +           +    G  KT  +  + L  +   P      I+    +     
Sbjct: 163 FLQEALMQPADKAPLVIVKGMAGTSKTFYSLAVGLEKLVNNPNGEYRRILISRPNAQFDT 222

Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
           +  +   ++   + P      + +L         +       +  K   I  R   +   
Sbjct: 223 DIGFLPGNEQEKISPL-MRPIIDNLEQLIDSSEEQRYSNEKELSDKIQEIFDRGLIQTEA 281

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
             ++   +     +  DEA          + G  T    +   I+  +  +++  + D
Sbjct: 282 LNYIRGRSIVKTYLIIDEAQNMTPNQ---VKGIITRAGKDTKIILLGDPNQIDRPYLD 336


>gi|281355726|ref|ZP_06242220.1| exodeoxyribonuclease V, alpha subunit [Victivallis vadensis ATCC
           BAA-548]
 gi|281318606|gb|EFB02626.1| exodeoxyribonuclease V, alpha subunit [Victivallis vadensis ATCC
           BAA-548]
          Length = 635

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 44/165 (26%), Gaps = 20/165 (12%)

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126
                 +  +     IS G G GKTT+ A ++    +  P + +   A +          
Sbjct: 174 QRLAALAAASRDFTVISGGPGTGKTTVVAALLALEFARAPELRVALCAPTG--------K 225

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
             ++    L         + ++               I S   T      ++      + 
Sbjct: 226 AQARLGEALREDGLKIGTAEAIRRRILELAPSTIDRLIGSAPLTH----RTKYHAGNPLP 281

Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
                   V  DE+S     +   ++       P    I+  +  
Sbjct: 282 F-----DLVIVDESSMVSLPLMARLMQALA---PETRLILLGDPN 318


>gi|58336778|ref|YP_193363.1| phage related helicase [Lactobacillus acidophilus NCFM]
 gi|58254095|gb|AAV42332.1| phage related helicase [Lactobacillus acidophilus NCFM]
          Length = 864

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 54/190 (28%), Gaps = 37/190 (19%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           QP++ Q E +  +     +  N       K  I +  G GKT L A    + +       
Sbjct: 222 QPNKMQKEALGEIQSLRQNGKN-------KALIISATGTGKTYLGA----FDVQKFKPKR 270

Query: 110 IICIANSETQL---KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
            + + + E  L   +N+ +  +    S                       +   +     
Sbjct: 271 FLYVVHREQILQKSRNSFYDVIGGAYSDYG--------------------IYSGNHREGL 310

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
           K   I     +  + +            +  DEA     +    I  +F    P     M
Sbjct: 311 KSKYIFATVQTLAKDENLKKFARDAFDYILFDEAHHLGSVQELKIFNYF---QPQFCLGM 367

Query: 227 TSNTRRLNGW 236
           T+   R + +
Sbjct: 368 TATPERTDDF 377


>gi|329955139|ref|ZP_08296096.1| ATP-dependent DNA helicase PcrA [Bacteroides clarus YIT 12056]
 gi|328526138|gb|EGF53157.1| ATP-dependent DNA helicase PcrA [Bacteroides clarus YIT 12056]
          Length = 785

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 34/296 (11%), Positives = 85/296 (28%), Gaps = 31/296 (10%)

Query: 58  FMEAVDVHCHS-NVNNSNPTIFK---CAISAGRGIGKTTLNAWMMLWLISTRP-GMSIIC 112
            +  +  +    N       ++      + AG G GKT +  + + +L+       +I+ 
Sbjct: 1   MIRNMSDYIQELNEGQRAAVLYNDGPSLVIAGAGSGKTRVLTYKIAYLLENGYQPWNILA 60

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           +  +    +  +   +++ + +   RH +     S+     +AE               T
Sbjct: 61  LTFTNKAARE-MKERIARQVGIERARHLWMGTFHSIFLRILHAEAARI---------GFT 110

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232
            +    +  D+     +         E      +    ++        N           
Sbjct: 111 SKFTIYDTADSKSLLRS------IIKEMGLDEKVYKPGMVQSRISNAKNHLVSPAGYANN 164

Query: 233 LNGWFYDI---FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
              +  D         + ++RY    R  + +D             D          QF 
Sbjct: 165 KEAYEGDCAAKMPALRDIYRRYWERCRQADAMDFDDLLFYTFLLFRDHPDVLARYQSQFR 224

Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHI 345
              V+ +   N+ + ++  +   +     ++       G D   +   RG  I++I
Sbjct: 225 YILVDEYQDTNFAQHSIVLQLAKEHQHVCVV-------GDDAQSIYSFRGADIDNI 273


>gi|290957398|ref|YP_003488580.1| type I restriction protein [Streptomyces scabiei 87.22]
 gi|260646924|emb|CBG70023.1| putative type I restriction enzyme [Streptomyces scabiei 87.22]
          Length = 1028

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/120 (13%), Positives = 31/120 (25%), Gaps = 5/120 (4%)

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICI---ANSETQLKNTLWAEVSKWLS-MLPHRHWF 141
           +G GK+    W+  W+   +P   ++ I      + Q++                     
Sbjct: 276 QGSGKSLTMVWLAKWIRENQPDARVLLITDRTELDDQIEKVFQGVNESIYRTKSGGDLLA 335

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
            +                 S    ++          E +       H    + VF DEA 
Sbjct: 336 TLNVSEEWLVCSLVHKFRGSEDEAARDA-AESEFIRELKATIPKDFHAKGNIFVFVDEAH 394


>gi|242020386|ref|XP_002430636.1| activating signal cointegrator 1 complex subunit 3, helc1, putative
            [Pediculus humanus corporis]
 gi|212515808|gb|EEB17898.1| activating signal cointegrator 1 complex subunit 3, helc1, putative
            [Pediculus humanus corporis]
          Length = 2141

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/189 (12%), Positives = 51/189 (26%), Gaps = 27/189 (14%)

Query: 45   LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            L  FS  +  Q +    +                   + A  G GKT +    M  +   
Sbjct: 1291 LYKFSHFNSIQTQIFHCLYHTDK-----------NVLLGAPTGSGKTVVAEIAMFRVFRV 1339

Query: 105  RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS-MG 163
             PG  ++ IA  +  ++  +      W   L      ++  L+   S     +     + 
Sbjct: 1340 YPGAKVVYIAPLKALVRERM----EDWKIRLEKNLKRKVVELTGDVSPDVKAINAADVIV 1395

Query: 164  IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
               + +    R++                  +  DE     +     +    +       
Sbjct: 1396 TTPEKWDGISRSWQTRNYV-------RKVALIIIDEIHLLGEDRGPVLEVIVS----RTN 1444

Query: 224  WIMTSNTRR 232
            +I +  T R
Sbjct: 1445 FISSYTTNR 1453


>gi|313159749|gb|EFR59106.1| helicase C-terminal domain protein [Alistipes sp. HGB5]
          Length = 772

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 45/326 (13%), Positives = 96/326 (29%), Gaps = 48/326 (14%)

Query: 7   TDQKLEQELHEMLMHAECVLSFKNFVMRFFP-WGIKGKPLEHFSQ---PHRWQLEFMEAV 62
           T ++ E +L +     E    +            I   P  + +    P  +Q   ++  
Sbjct: 116 TGKETEIKLEDFPTEEELYNRYLASKNYTSDELNIIETPFYYDAHSHEPRYYQRIAVDRT 175

Query: 63  DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN 122
                           +  +    G GKT     ++  L  +     I+ +A+     +N
Sbjct: 176 VEAIARGQQ-------RVLVVMATGTGKTFTAFQIIHRLHKSGVKKKILYLAD-----RN 223

Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182
            L  +    +        F  +  S+       ++        + ++ +  +   E +PD
Sbjct: 224 ILIDQT--MVQDFKPFKKFMTKITSV--GEGEEKIDSSYEVYMALYHQLVGK---EGKPD 276

Query: 183 TFVGPHNTHGMAVFNDEA---SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
            F+         +  DE    S   D   + +L +F+         MT+  +   G    
Sbjct: 277 PFLEVQPNFFDLIIVDECHRGSAKDDSAWRKVLEYFSSATQ---IGMTATPKADEG---- 329

Query: 240 IFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299
                        +D            +GI      D  +A   +   F   ++  + P 
Sbjct: 330 ----------ANNLDYFGEPVYTYSLLQGI-----QDGFLAPYRVTADFINVDLQGWTPE 374

Query: 300 NYIEEAMSREAIDDLYAPLIMGCDIA 325
               + + +E    LY    +G D+A
Sbjct: 375 EGEIDLLGKEIEQKLYQRQNIGRDLA 400


>gi|292490248|ref|YP_003525687.1| type III restriction protein res subunit [Nitrosococcus halophilus
           Nc4]
 gi|291578843|gb|ADE13300.1| type III restriction protein res subunit [Nitrosococcus halophilus
           Nc4]
          Length = 531

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 43/156 (27%), Gaps = 8/156 (5%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           K  +    G GKT     ++   +  R    +  +ANS   L+     +  K   +L  R
Sbjct: 149 KAVVHMPTGAGKTRTAMHILARHLLERGPTLVCWLANSAELLEQAA-EDFEKSWRVLGDR 207

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               ++               +   + +    +      E+                  D
Sbjct: 208 P---VKLFRFWGDRSIDLHTLRDGVLVAGFAKMHAAYMREQNA---FIALGDRTSLTIVD 261

Query: 199 EASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRL 233
           EA           I   FT+   N+   +T+   R 
Sbjct: 262 EAHQAIAPTYRSVIEALFTKRPQNQLLGLTATPGRT 297


>gi|118372980|ref|XP_001019684.1| hypothetical protein TTHERM_00136030 [Tetrahymena thermophila]
 gi|89301451|gb|EAR99439.1| hypothetical protein TTHERM_00136030 [Tetrahymena thermophila SB210]
          Length = 2532

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 37/125 (29%), Gaps = 15/125 (12%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT------LWAEVSK-WLSMLPHRH 139
            G GKT L A ++   I       ++  + + + L N       ++ E+    L    +++
Sbjct: 2116 GTGKTFLIAHLI--KILADQKKKVLVTSFTNSALDNIIVKLLEIFPEIKNICLRKGSNKN 2173

Query: 140  WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT--HGMAVFN 197
                 +  +  + +  E   Q      +                    H+          
Sbjct: 2174 LIHSVAQEILYNPYSFEEERQFSDYLKEKQIYFATIIGSNN----KLFHSEKIKFDYCII 2229

Query: 198  DEASG 202
            DEAS 
Sbjct: 2230 DEASQ 2234


>gi|325995949|gb|ADZ51354.1| hypothetical protein hp2018_06581 [Helicobacter pylori 2018]
 gi|325997543|gb|ADZ49751.1| hypothetical protein hp2017_06571 [Helicobacter pylori 2017]
          Length = 1449

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 54/204 (26%), Gaps = 42/204 (20%)

Query: 29  KNFVMRFFPWGIKG-------KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81
           ++F+     W            PL    +P   Q E +E    +  +  N          
Sbjct: 145 EDFIYSRIDWEKFDPTKTEDEIPLCDKKRPRPHQTEAIEETKKYFSNPKNARGK-----L 199

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE-------------- 127
           I A  G GKT  +    L ++        + +A S   L    + E              
Sbjct: 200 IMAC-GTGKTYTS----LKIMEALDPKITLFLAPSIALLSQ-TFREYAQEKSDPFYASIV 253

Query: 128 --------VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI--DSKHYTITCRTYS 177
                     K  S        +   L + PS    ++L        ++K + I     S
Sbjct: 254 CSDDKTGQSKKNKSKNEDNDDIKFSELPIKPSTRLEDILSTYEKAQKENKRFIIFSTYQS 313

Query: 178 EERPDTFVGPHNTHGMAVFNDEAS 201
             R              +  DEA 
Sbjct: 314 ALRIKEAQEAGLNEIDLIICDEAH 337


>gi|307637357|gb|ADN79807.1| hypothetical protein hp908_0680 [Helicobacter pylori 908]
          Length = 1622

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 54/204 (26%), Gaps = 42/204 (20%)

Query: 29  KNFVMRFFPWGIKG-------KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81
           ++F+     W            PL    +P   Q E +E    +  +  N          
Sbjct: 145 EDFIYSRIDWEKFDPTKTEDEIPLCDKKRPRPHQTEAIEETKKYFSNPKNARGK-----L 199

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE-------------- 127
           I A  G GKT  +    L ++        + +A S   L    + E              
Sbjct: 200 IMAC-GTGKTYTS----LKIMEALDPKITLFLAPSIALLSQ-TFREYAQEKSDPFYASIV 253

Query: 128 --------VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI--DSKHYTITCRTYS 177
                     K  S        +   L + PS    ++L        ++K + I     S
Sbjct: 254 CSDDKTGQSKKNKSKNEDNDDIKFSELPIKPSTRLEDILSTYEKAQKENKRFIIFSTYQS 313

Query: 178 EERPDTFVGPHNTHGMAVFNDEAS 201
             R              +  DEA 
Sbjct: 314 ALRIKEAQEAGLNEIDLIICDEAH 337


>gi|258511072|ref|YP_003184506.1| type III restriction protein res subunit [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477798|gb|ACV58117.1| type III restriction protein res subunit [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 607

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 71/265 (26%), Gaps = 32/265 (12%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q+E ++A+  +             +  + A  G GKT +++   +  +   P   ++
Sbjct: 15  RDYQVEAVDAIRRY----------PKPRPVLVAATGAGKTVISSQFAVERLERGP---VL 61

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +A+ +  L  TL                   +   +          +            
Sbjct: 62  FLAHRDELLDQTLDK-------FSVVFDALAEKGREVKIGRIQGPDDDVEADFAVASVQT 114

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF----TELNPNRFWIMT 227
             +    ER + ++  H T    V  DE           I        +    +    +T
Sbjct: 115 ISQP---ERLERWMAAHETTPT-VITDECHHATARTYMRIYHALGFLGSVPEGHVHLGLT 170

Query: 228 SNTRRLNGW----FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283
           +   R +       YD     +       +                +      +D +  E
Sbjct: 171 ATPYRTDKADLRKVYDGVAYAIGIHDLIDMGWLVPPKSVKLEIVEGLEGKDDGADWSDAE 230

Query: 284 ILGQFPQQEVNNFIPHNYIEEAMSR 308
           + G      VN  I   +  +A  R
Sbjct: 231 VEGAVDTPSVNKQIVAAWQAQASDR 255


>gi|308234571|ref|ZP_07665308.1| type III restriction enzyme, res subunit [Atopobium vaginae DSM
           15829]
 gi|328944169|ref|ZP_08241634.1| methylase [Atopobium vaginae DSM 15829]
 gi|327492138|gb|EGF23912.1| methylase [Atopobium vaginae DSM 15829]
          Length = 878

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 60/187 (32%), Gaps = 19/187 (10%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q E  +    +   +  + N  I      A  G GKT + A ++L+L +      + 
Sbjct: 37  REYQKEAFQYFVTYFEKDALHKNKQIHTLFHMA-TGSGKTVMMAGLILYLYTKGYRKFLF 95

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE---------QSM 162
            +  +     N L      +L+ L  ++ F      L       ++             +
Sbjct: 96  FVNQT-----NILKKTEENFLNALSSKYLFADNLSHLGMKIKVKKVDRFSDTALDDDIEL 150

Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222
              +     T   +S+E   T+    N   +   +DE+        K      TE +  +
Sbjct: 151 LFTTTQKLHTDMLFSKENAPTYADFENDKIIF-ISDESHHINSYTKK---KTSTEEDAEK 206

Query: 223 FWIMTSN 229
            W  T N
Sbjct: 207 TWEYTVN 213


>gi|197335121|ref|YP_002155200.1| ATP-dependent RNA helicase SrmB [Vibrio fischeri MJ11]
 gi|197316611|gb|ACH66058.1| ATP-dependent RNA helicase SrmB [Vibrio fischeri MJ11]
          Length = 413

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 82/303 (27%), Gaps = 38/303 (12%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMSI 110
            E          +              SA  G GK+       L  +   P        I
Sbjct: 19  EEIDYQRPTQVQAMTIPEALEGKDILASAPTGTGKSAAFLLPALQHLDDFPRREPGPARI 78

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + +  +         A+ ++ L+       F +     +          Q +        
Sbjct: 79  LILTPTRELAIQV--ADEARQLAKYTRHKVFTITGGISYQDHADILATTQDI-------- 128

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP-NRFWIMTSN 229
           +                       +  DEA    D+    ++   ++     +   + S 
Sbjct: 129 VVATPGRLMEYIEAERFDCRAIETLILDEADRMLDMGFGPVVDRLSKECRWRKQTFLFSA 188

Query: 230 T---RRLNGWFYDIFNIP---------LEDWKRYQIDTR-TVEGIDSGFHEGIISRYGLD 276
           T   R + G+  D+ N P          E  K  Q   R           + I+      
Sbjct: 189 TLEGRGVEGFTADLLNEPAEINAEPSRRERKKITQWYHRADNMAHKIDLLKSILKEQAER 248

Query: 277 SDVA--RIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP-------LIMGCDIAGE 327
           S V     E L +         IP  +I+  M++E+ ++  A        +++  D+A  
Sbjct: 249 SIVFVKTRERLAELRGHLETAKIPCAWIQGEMAQESRNNAIARFRDGTVNVLIATDVAAR 308

Query: 328 GGD 330
           G D
Sbjct: 309 GID 311


>gi|328870919|gb|EGG19291.1| DEAD/DEAH box helicase [Dictyostelium fasciculatum]
          Length = 2224

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/254 (9%), Positives = 59/254 (23%), Gaps = 29/254 (11%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               ++A    GKT      +L  +   P    + IA  E+ +          W      +
Sbjct: 1404 NVFVAAPANTGKTVCAELAVLRTLINNPEARCVYIAPVESMVTVRS----RDWAYKFGQK 1459

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                        +        + +   ++ + I  R + ++                  D
Sbjct: 1460 FGKVSVLTGDAVTDNKILEASRIIVTTAERWDILSRKWRQKNS------RVQSVSLFIVD 1513

Query: 199  EASGTP--------DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250
            E             +I+   +    T+      +I  S+         +           
Sbjct: 1514 ELQMIGSGESGSTMEIVLSRMRYIATQTGSPIRFIGLSSPVANARDLAEWMGATP----- 1568

Query: 251  YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
                      +     E  +  +   +   R   +      +   +   +    A +   
Sbjct: 1569 -ATMFNFHPDVRPVEMEIQMQGFDYPNFQERQMAM-----TKPALYAVSHMDRTAQTLVY 1622

Query: 311  IDDLYAPLIMGCDI 324
            +    A   M  DI
Sbjct: 1623 VPTRKAARQMAADI 1636


>gi|156344546|ref|XP_001621224.1| hypothetical protein NEMVEDRAFT_v1g222227 [Nematostella vectensis]
 gi|156206954|gb|EDO29124.1| predicted protein [Nematostella vectensis]
          Length = 1136

 Score = 42.2 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 33/308 (10%), Positives = 76/308 (24%), Gaps = 37/308 (12%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
           +F   +     +        I + A+   R   KTT    ++ WLI       +  +  +
Sbjct: 54  DFYCGIFRIITNRNPEQLRKILRFALGLPRAHAKTTFVKVLICWLIVYDKISFVAILCAN 113

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
                  +        S      +                  ++      +   +  +  
Sbjct: 114 MDLASELMSDVSDMLGSSNCEAVYGLWAR-----QLTVDNKEQKKCLYHKRDVILIAKGA 168

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDI-----------INKSILGFFTELNPNRFWI 225
                   +   +     +F D+A    +               ++    T    +R  I
Sbjct: 169 DGAV--RGLNIKHKRPDLIFCDDAQTKENDDSPTERVKFRKWLVAMFKIITPDPVDRLII 226

Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRY---------QIDTRTVEGIDSGFHEGIISRYGLD 276
              N        Y + N P   W  +         +     +  ++  +          +
Sbjct: 227 YVGNMYSEECILYQLKNNP--RWISFITGAIKANGEPLWPELHSLEDLYESYEHDAALNE 284

Query: 277 SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE--GGDKTVV 334
           +DV   E++   P     + +     E        + +   + +  D AG     D  V+
Sbjct: 285 ADVWFAEVMND-PVSRTTSLLTEQLPE--YKYNVEEQIPDGVFVTIDPAGFRENSDDNVI 341

Query: 335 ---VFRRG 339
                  G
Sbjct: 342 VLHYVFDG 349


>gi|257466056|ref|ZP_05630367.1| PhoH family protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917211|ref|ZP_07913451.1| PhoH family protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691086|gb|EFS27921.1| PhoH family protein [Fusobacterium gonidiaformans ATCC 25563]
          Length = 435

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 44/166 (26%), Gaps = 21/166 (12%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTR-PGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
             +  G G GKT L     L  +  R     I          K+            L + 
Sbjct: 245 VTLVGGAGTGKTLLAIAAALEQVVERKKYKKIFIARPIIPMGKD------------LGYL 292

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE---ERPDTFVGPHNTHG--M 193
              E + L       +  +   S     K      +        + +             
Sbjct: 293 PGSEKEKLKPWMQPIFDNIEFLSHTRGEKTGEKVVQGLEAMGLMKIEPLTYIRGRSIPAG 352

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
            +  DEA     +  K+I    T +  +   + T +  +++  + D
Sbjct: 353 FIVIDEAQNLTPLEIKTI---VTRVGEDTKIVFTGDPAQIDNPYLD 395


>gi|257452151|ref|ZP_05617450.1| PhoH family protein [Fusobacterium sp. 3_1_5R]
 gi|317058696|ref|ZP_07923181.1| PhoH family protein [Fusobacterium sp. 3_1_5R]
 gi|313684372|gb|EFS21207.1| PhoH family protein [Fusobacterium sp. 3_1_5R]
          Length = 435

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 44/166 (26%), Gaps = 21/166 (12%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTR-PGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
             +  G G GKT L     L  +  R     I          K+            L + 
Sbjct: 245 VTLVGGAGTGKTLLAIAAALEQVVERKKYKKIFIARPIIPMGKD------------LGYL 292

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE---ERPDTFVGPHNTHG--M 193
              E + L       +  +   S     K      +        + +             
Sbjct: 293 PGSEKEKLKPWMQPIFDNIEFLSHTRGEKTGEKVVQGLEAMGLMKIEPLTYIRGRSIPAG 352

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
            +  DEA     +  K+I    T +  +   + T +  +++  + D
Sbjct: 353 FIVIDEAQNLTPLEIKTI---VTRVGEDTKIVFTGDPAQIDNPYLD 395


>gi|313649747|gb|EFS14171.1| phage terminase large subunit domain protein [Shigella flexneri 2a
           str. 2457T]
 gi|332761022|gb|EGJ91310.1| phage terminase large subunit domain protein [Shigella flexneri
           4343-70]
 gi|332761328|gb|EGJ91614.1| phage terminase large subunit domain protein [Shigella flexneri
           2747-71]
 gi|332763393|gb|EGJ93633.1| phage terminase large subunit domain protein [Shigella flexneri
           K-671]
 gi|333007918|gb|EGK27394.1| phage terminase large subunit domain protein [Shigella flexneri
           K-218]
 gi|333021518|gb|EGK40768.1| phage terminase large subunit domain protein [Shigella flexneri
           K-304]
          Length = 159

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 313 DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
           +      +G D+A  G DK   V+R G+++    +W AK
Sbjct: 10  EPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAK 48


>gi|257791726|ref|YP_003182332.1| metal dependent phosphohydrolase [Eggerthella lenta DSM 2243]
 gi|257475623|gb|ACV55943.1| metal dependent phosphohydrolase [Eggerthella lenta DSM 2243]
          Length = 732

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 61/237 (25%), Gaps = 36/237 (15%)

Query: 8   DQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCH 67
           D   EQ L ++L   +                   + +  F  P     E    V   C 
Sbjct: 185 DPLSEQSLVDLLGCLK-------------------EEVARFYPPTSALNETRCQVLDACI 225

Query: 68  SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN--TLW 125
              +N +P  F   +    G GKT  +    L     R    ++      + ++    ++
Sbjct: 226 RAASN-HPGFFSLTV--PTGGGKTYASLLFALEHAVKRDARRVVYAVPYTSIIEQNARVF 282

Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK--------HYTITCRTYS 177
            +V    S+L H   F+        S    +  +                       +  
Sbjct: 283 RDVLGERSVLEHHANFDFDFDEEVESYKSGDAKKALRRASENWDAPIVVTTNVQFFESLY 342

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDI----INKSILGFFTELNPNRFWIMTSNT 230
             R       HN     +  DEA   P        ++++        +      +  
Sbjct: 343 ANRTSRCRKLHNIANSVIVLDEAQMVPTKQLLPCLRALIELVANYGCSVVLCTATQP 399


>gi|110596909|ref|ZP_01385199.1| Helicase-like:DEAD/DEAH box helicase-like [Chlorobium ferrooxidans
           DSM 13031]
 gi|110341596|gb|EAT60056.1| Helicase-like:DEAD/DEAH box helicase-like [Chlorobium ferrooxidans
           DSM 13031]
          Length = 861

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/176 (11%), Positives = 40/176 (22%), Gaps = 22/176 (12%)

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
            H               +ISA    GK+ +    +   I + P  +I+ +  +   ++  
Sbjct: 147 NHFQREFWGRTKQNNWISISAPTSSGKSFILGQWLADYIRSSPCATIVYLVPTRALIQQV 206

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
                        +     + +L L  +                   +   T        
Sbjct: 207 QQDLERVV--KSENIPLVAISTLPLLSA------------YKPGVANVFVFTQERFHILI 252

Query: 184 FVGPHNTHGMAVFNDEASGTPDII-----NKSILGFFTELNPNRFWIM---TSNTR 231
                N     +  DEA    D        ++I          R       T N  
Sbjct: 253 GERGANLSVDLLIVDEAQKIGDNYRGVLLQQAIENTVHRNKNCRIVFASPMTDNPD 308


>gi|24380132|ref|NP_722087.1| hypothetical protein SMU.1764c [Streptococcus mutans UA159]
 gi|24378131|gb|AAN59393.1|AE015004_12 conserved hypothetical protein [Streptococcus mutans UA159]
          Length = 802

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/210 (10%), Positives = 48/210 (22%), Gaps = 18/210 (8%)

Query: 15  LHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSN 74
           ++ +    +  L+          +G  G P    +       E    +     S   + +
Sbjct: 223 INPLKQEEKIRLNRSYLEAIEKKYGEFGSPTTRLN-------EIRSQIAERVKSRGESDS 275

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
             I++  +    G GKT L+       +  +       I    + L+    A        
Sbjct: 276 TGIYRLDL--PTGAGKTNLSMRYAFHQLVDQDRSRFFYITPFLSVLEQNAAAIKKVIGED 333

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY---------TITCRTYSEERPDTFV 185
               H   +            E          + +             +T  + +     
Sbjct: 334 GVLEHHSNVVQNKQENEDKGDEKESLLPEYLIESWDSPVVLTSMVQFFQTLFKTKSANIR 393

Query: 186 GPHNTHGMAVFNDEASGTPDIINKSILGFF 215
              +     +  DE    P  +        
Sbjct: 394 RFSSLANSVLILDEVQSLPIEVTALFNLTM 423


>gi|326803590|ref|YP_004321408.1| SNF2 family N-terminal domain protein [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650654|gb|AEA00837.1| SNF2 family N-terminal domain protein [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 970

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/158 (10%), Positives = 42/158 (26%), Gaps = 18/158 (11%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G+GKT      +L      P  +++ +A +            S   +       F  +  
Sbjct: 547 GLGKTVQTVAFLLDYFDKLPQANVLILAPA------------SVIYNWKYEIQRFAPEVK 594

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
            +   G   E  +         +  +  +Y     +     H  +   +  DEA    + 
Sbjct: 595 VVVLDGSVEEREKIRKENPKAIWICSYHSYR----NDQEAYHQEYFDVLILDEAQALKNE 650

Query: 207 INKSILGFFTELNPNRFWIMTSNT-RRLNGWFYDIFNI 243
               +       +      ++          F+ +  +
Sbjct: 651 R-TVLYQSVVNQDSGMRIGLSGTPLENNLNEFWALMQM 687


>gi|269140076|ref|YP_003296777.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
 gi|267985737|gb|ACY85566.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
 gi|304559904|gb|ADM42568.1| ATP-dependent RNA helicase SrmB [Edwardsiella tarda FL6-60]
          Length = 448

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/192 (10%), Positives = 44/192 (22%), Gaps = 18/192 (9%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
           SA  G GKT       L  +   P        ++ +  +                     
Sbjct: 47  SAPTGTGKTAAFLLPALQHLLDFPRKKSGPPRVLILTPTRELAMQV----------ADQA 96

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
           R      SL +         +  +   ++    +        +              +  
Sbjct: 97  RELARHTSLDITTITGGVSYINHAEIFNTNQDMVVATPGRLLQYIKEENFDCRAVETLIL 156

Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257
           DEA    D+   S +   +     R   +  +    +   +D  +  L D       +  
Sbjct: 157 DEADRMLDMGFASDIETVSAETRWRRQTLLFSATLESDAVHDFADRLLNDPVDV---SAE 213

Query: 258 VEGIDSGFHEGI 269
               +    +  
Sbjct: 214 PPRRERKKIQQW 225


>gi|258440753|ref|ZP_05690695.1| phage terminase [Staphylococcus aureus A8115]
 gi|282894690|ref|ZP_06302917.1| phage terminase large subunit [Staphylococcus aureus A8117]
 gi|257852494|gb|EEV76414.1| phage terminase [Staphylococcus aureus A8115]
 gi|282762967|gb|EFC03100.1| phage terminase large subunit [Staphylococcus aureus A8117]
          Length = 431

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 63/224 (28%), Gaps = 21/224 (9%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
            N + ++  +   RG  K+   A   ++ +      +I+ +       K + + ++    
Sbjct: 20  HNKSFYRV-VKGSRGSKKSKTTAINFVYRLMKYDWANILVVRRFSNTNKQSTYTDLKWAT 78

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
           + L   H F+                   +        I  R   +    T +       
Sbjct: 79  NQLGVAHLFKFNES------------LPEITYKPTGQKILFRGLDDPLKITSITVDTGIL 126

Query: 193 MAVFNDEASGTPD-----IINKSILGFFTELNPNRFWIMTSNTRRLNGW---FYDIFNIP 244
              + +EA           + +SI G +      +   +T N      W    +      
Sbjct: 127 CWAWFEEAYQIETFAKFSTVVESIRGSYDSPEFFKQITVTFNPWSERHWLKPTFFDEETK 186

Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
           L +        R  E +D    E     Y  +   ARI   G +
Sbjct: 187 LNNTFSDTTTYRVNEWLDKVDIERYEDLYIKNPRRARIVCDGDW 230


>gi|206580893|ref|YP_002240749.1| type I site-specific deoxyribonuclease, HsdR family [Klebsiella
           pneumoniae 342]
 gi|206569951|gb|ACI11727.1| type I site-specific deoxyribonuclease, HsdR family [Klebsiella
           pneumoniae 342]
          Length = 1031

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/188 (11%), Positives = 55/188 (29%), Gaps = 5/188 (2%)

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICI--ANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           +G GK+    W+  W+    P   ++ +       +   +++  V + +      +    
Sbjct: 278 QGSGKSLTMVWLAKWIRENVPNSRVLIVTDRTELDEQIESVFMGVDEEIYRTSSGNDLIA 337

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
                +P    + + +     +++    T    +E +            + VF DE    
Sbjct: 338 TLNHPNPWLICSLVHKFGRRSEAEDTAATDDFITELQQSLTKTFRAKGDLFVFVDECH-- 395

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
               +  +    T + P   +I  + T  +         +       Y+ D    +G+  
Sbjct: 396 -RTQSGKLHNAMTAILPEALFIGFTGTPLMKKDKKKSVEVFGPYIHTYKFDEAVADGVVL 454

Query: 264 GFHEGIIS 271
                   
Sbjct: 455 DLRYEARD 462


>gi|183600188|ref|ZP_02961681.1| hypothetical protein PROSTU_03732 [Providencia stuartii ATCC 25827]
 gi|188022485|gb|EDU60525.1| hypothetical protein PROSTU_03732 [Providencia stuartii ATCC 25827]
          Length = 630

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 7/96 (7%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN---AWMMLWLI 102
             F +P  WQ + ++ +      N   +       +I AG G GKT      A  +L   
Sbjct: 1   MKFIRPDHWQPQGIDDL----EPNAWQALRQRESTSIIAGPGAGKTEFLAQKAAYLLETG 56

Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              P   I+ I+      KN       +    L +R
Sbjct: 57  LCPPNKKILAISFKTDAAKNLADRVKERCPEELSNR 92


>gi|319651117|ref|ZP_08005250.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
 gi|317397171|gb|EFV77876.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
          Length = 463

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/203 (12%), Positives = 51/203 (25%), Gaps = 25/203 (12%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
             F +P   Q +   A+ +                      G GKTT     +L  I   
Sbjct: 1   MGFEEPTPIQAQ---AIPIGMKGKDMIGQAQT---------GTGKTTAFGVPLLEQIDLN 48

Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
            G+  + +A +          E+++            ++ +   P     ++  Q   + 
Sbjct: 49  EGIQGLVLAPTRELAVQVA-EELNRIGQ---------VKGVRTLPVYGGQDITRQIRALK 98

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTE--LNPNR 222
              + I                  ++   V  DEA         + I    +E       
Sbjct: 99  KHPHIIAATPGRLIDHIERKTIRLSNIKMVVLDEADEMLNMGFIEDIERILSEIKGERQT 158

Query: 223 FWIMTSNTRRLNGWFYDIFNIPL 245
                +  +R+          P 
Sbjct: 159 LLFSATMPKRIQSLAEKFMQEPE 181


>gi|294673671|ref|YP_003574287.1| hypothetical protein PRU_0944 [Prevotella ruminicola 23]
 gi|294472506|gb|ADE81895.1| hypothetical protein PRU_0944 [Prevotella ruminicola 23]
          Length = 582

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 31/126 (24%), Gaps = 2/126 (1%)

Query: 80  CAISAGRGIGKTTLNAW-MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
             I AGR  GKT   A   +L  +   PG +   +  +           +        + 
Sbjct: 44  TVIVAGRRTGKTDSIASPFVLRNMQRMPGSTGGIVVPTFKHGLTNTIPGLLAAWKRWGYL 103

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
           +          P  +   + E     +                D     ++     +  D
Sbjct: 104 NGIHYVVGRKPPRSFAKPITEP-ADYEHVITFYNGSIAVIISQDRPGSSNSLTLSWLLID 162

Query: 199 EASGTP 204
           EA    
Sbjct: 163 EAKFID 168


>gi|302496558|ref|XP_003010280.1| ABC bile acid transporter, putative [Arthroderma benhamiae CBS
            112371]
 gi|291173822|gb|EFE29640.1| ABC bile acid transporter, putative [Arthroderma benhamiae CBS
            112371]
          Length = 1338

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 66/249 (26%), Gaps = 32/249 (12%)

Query: 7    TDQKLEQELHEMLMHAECVLSFKNFVM-RFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV- 64
            T     Q L       E  L   N V         +  P E+ S P  W      A +  
Sbjct: 1043 TFSSTLQTLVTAWTQLETALGAINRVRSYSQDVKDENLPNENGSVPDEWPESGAIAFNDV 1102

Query: 65   ---------HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
                          VN S     K AI    G GK++L +   L  +      +I+    
Sbjct: 1103 SASYDPSLGPVLKGVNLSINAGEKVAICGRTGSGKSSLVS--CLLRMLEMDSGTILI--- 1157

Query: 116  SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS---LHPSGWYAELLEQSMGIDSKHYTIT 172
                +      +V   L+ LP   +F   ++            E +  S+        + 
Sbjct: 1158 DGIDISTISRQQVRSRLNTLPQEPFFLYGTVRDNVDPLQLADDEAVIGSLQAVGLWEFLE 1217

Query: 173  CRTYSEERPDTFVGPHNTHGMA------------VFNDEA-SGTPDIINKSILGFFTELN 219
             R   +E        H    +             +  DEA S      +K +     E  
Sbjct: 1218 ARGGLDEEVSEDKLSHGQRQLFCLARAVVKQGNILIMDEATSSVDAETDKVMEDVIREKF 1277

Query: 220  PNRFWIMTS 228
                 I  +
Sbjct: 1278 KGMTVIAIA 1286


>gi|194872386|ref|XP_001973017.1| GG15853 [Drosophila erecta]
 gi|190654800|gb|EDV52043.1| GG15853 [Drosophila erecta]
          Length = 687

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 38/141 (26%), Gaps = 4/141 (2%)

Query: 72  NSNPTIFK-CAISAGRGIGKTTLNAWMMLWLISTRPGMSI--ICIANSETQLKNTLWAEV 128
              P   +   +SA  G GKT   A  ++ L+S R    +  + +           +  +
Sbjct: 177 KPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVECKVRALIVLPVAELALQV-YRVI 235

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
           SK  S          +   L           +          +T      E      G  
Sbjct: 236 SKLCSKTELEVCLLSKQHKLEDEQEKVVEQYKGKYYSKADIVVTTPGRLVEHLHATKGFC 295

Query: 189 NTHGMAVFNDEASGTPDIINK 209
                 +  DEA    D + +
Sbjct: 296 LKSLKFLVIDEADRIMDAVFQ 316


>gi|256833664|ref|YP_003162391.1| hypothetical protein Jden_2456 [Jonesia denitrificans DSM 20603]
 gi|256687195|gb|ACV10088.1| conserved hypothetical protein [Jonesia denitrificans DSM 20603]
          Length = 1247

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/196 (8%), Positives = 40/196 (20%), Gaps = 13/196 (6%)

Query: 80   CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             A+    G GKT + + ++        G +I  +A S   + N L + + ++  +     
Sbjct: 858  VAVQGPPGAGKTFVASHVI--ASLAHQGWNIAVVAQSHAVINNVLTSVLGRFPELAGRIA 915

Query: 140  WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                +                                +  +              V  DE
Sbjct: 916  KNTPKKTDPPAGMVPVTPATIGQFFADNTTQGVVVGATAWQLANPDFAPPHGWDVVVIDE 975

Query: 200  ASGTPDIINKSILGF-----FTELNPNRFWIMTSNTRRLNGWFYDIF------NIPLEDW 248
            A       + ++                  +               +       +P    
Sbjct: 976  AGQYSLANSLAVTHAADRVLLLGDPQQLPQVSQGTHPEPINESALSWLVEGHPIVPEHRG 1035

Query: 249  KRYQIDTRTVEGIDSG 264
                   R    +   
Sbjct: 1036 FFLDHTWRMHPDLTYP 1051


>gi|195145936|ref|XP_002013946.1| GL23119 [Drosophila persimilis]
 gi|194102889|gb|EDW24932.1| GL23119 [Drosophila persimilis]
          Length = 1395

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 42/157 (26%), Gaps = 8/157 (5%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              +    G+GKT + A +M       P   II +A +   +      +++    ++P  
Sbjct: 76  NTLVVLPTGLGKTFIAAVVMYNFYRWYPQGKIIFMAPTRPLVAQ----QIAACQKIMPFP 131

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               +Q          A+L        +    +          D            +  D
Sbjct: 132 GSDTVQLTGQLARPKRAQLWASKRVFFATPQVVHS---DMLETDDGAYFPFGAIKLLVVD 188

Query: 199 EAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
           EA           +       NPN   +  S T    
Sbjct: 189 EAHRAKGRYAFTQVADCMMAHNPNFRMLALSATPGRT 225


>gi|159899100|ref|YP_001545347.1| cell divisionFtsK/SpoIIIE [Herpetosiphon aurantiacus ATCC 23779]
 gi|159892139|gb|ABX05219.1| cell divisionFtsK/SpoIIIE [Herpetosiphon aurantiacus ATCC 23779]
          Length = 2947

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 41/358 (11%), Positives = 86/358 (24%), Gaps = 58/358 (16%)

Query: 8   DQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCH 67
            +KL +EL  + +      +  + V  F   G              WQ            
Sbjct: 462 SRKLAEELSTLNLRQSAGANLADAVAFFDLMGYSSLDELKVDALKNWQRSIQPKYANWLR 521

Query: 68  SNVNNSNPTIFKCAI------------SAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
           + V   +    +  +            +   G GK+ L   ++  +  T     +  +  
Sbjct: 522 AKVGRMSGNKARTLVFSAKKDGVHGMVAGSTGSGKSELLISLIAVMAVTYDPSVVNFV-- 579

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
               L +       K    LPH             +  +  +  +       +     + 
Sbjct: 580 ----LVDYKGGGAFKEFERLPHCVDIITNLAGDGVTRMFTAIKSEMQRRQVLNNETDTKN 635

Query: 176 YSEERPDTFVGPHNTHG-MAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRR 232
             E R   F   H  +  + +  DE +         +  L   T +  +    +    +R
Sbjct: 636 IVEYRKKNFHTTHYPYPYLFIIIDEFAEMIADRAEYRGELESITRIGRSLGVSLILAAQR 695

Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF-PQQ 291
            +G    +                     +  F   +      +S          F P  
Sbjct: 696 PSGITDQM-------------------RSNIKFRISLRVETQGESREMLRRSDAAFLPTG 736

Query: 292 EVNNFI------PHNYIEEAMSREAIDDLY----APLIM-------GCDIAGEGGDKT 332
                           I+ A + +   D        +I        G D   +  D++
Sbjct: 737 IPGRGYLQVGNEEIELIQVAYTGDPYVDPNSVSQEKVIWPDRRRAEGVDPGIDTQDQS 794


>gi|284053201|ref|ZP_06383411.1| helicase-like protein [Arthrospira platensis str. Paraca]
          Length = 1044

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/280 (12%), Positives = 68/280 (24%), Gaps = 36/280 (12%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           QL+ +  V      +   ++            G+GKT     ++ +L+ +     ++ +A
Sbjct: 299 QLKILRRVAETFPRSFLIADEV----------GLGKTVETGAILRYLLVSGRVKRVLVLA 348

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            +  Q +   W E  +         W   Q     P G  + + E     +     +   
Sbjct: 349 PASVQSQ---WHEELR--EKFNLHFWSYGQKEFKDPYGAVSTVREAENPWNRHPLIVASS 403

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP--------DIINKSILGFFTELNPNRFWIM 226
                R  +           V  DEA            D  N  +       +  R  ++
Sbjct: 404 HLVRRRERSQELLAAEPWDLVVLDEAHHARRRTPKAHQDTPNSLLELMGQLRDRTRSLLL 463

Query: 227 TSNTRRLNGWF-----------YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275
            S T                  Y  +         +   +   +     F + +   Y  
Sbjct: 464 LSATPMQIDAIEVFDLLELLGLYGHWRYGENFCDYFASLSEPPDPFILEFWQNMSVDYFR 523

Query: 276 DSDVARIEILGQFPQQEVNNF-IPHNYIEEAMSREAIDDL 314
                   + G F              I +   R      
Sbjct: 524 GGGEPCSRLQG-FLGDRDRLLSYKLQDIWQRGQRMVNPKQ 562


>gi|281204972|gb|EFA79166.1| hypothetical protein PPL_07991 [Polysphondylium pallidum PN500]
          Length = 1587

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 62/222 (27%), Gaps = 20/222 (9%)

Query: 55   QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI--STRPGMS--- 109
            Q   +          +  S        +    G GKT   A M+L ++    R       
Sbjct: 1044 QNVDLRLSLTDSQLGIVKSIVQRRLQLVVGPPGTGKTHFLALMVLIIMETLIRAEKKSYI 1103

Query: 110  IICIANSETQLKNTLWA--EVSKWLSMLP----HRHWFEMQSLSLHPSGWYAELLEQSMG 163
            I   A++ T + N L    E+ K          +    + +S  L  S     +++    
Sbjct: 1104 IAITAHTHTAIDNLLVRIAELKKEYESFAGNALNFQIVKKESSKLSESLTSHNIVKYDKK 1163

Query: 164  IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
                   I    +                  +  DEAS  P  +    L           
Sbjct: 1164 HKFNLMCIGSTCWGLNTL-------GLDLDMLIIDEASQLPSPLAALGLNAVNLEKSRV- 1215

Query: 224  WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265
             ++  + ++L       F +  +     +++ +  +   S F
Sbjct: 1216 -VVVGDPKQLGPVLKASFIVRKDLSVSDKLEHQEPKFHKSIF 1256


>gi|239996950|ref|ZP_04717474.1| hypothetical protein AmacA2_21103 [Alteromonas macleodii ATCC
           27126]
          Length = 753

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 39/137 (28%), Gaps = 13/137 (9%)

Query: 68  SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127
                 +       I+A RG GK++L    +      R G +++  +     +KN L   
Sbjct: 209 RLYQAHSLNKLNALITAPRGRGKSSLLGIFI--ESLIRQGKNVLLTSERFDNVKNVLSRI 266

Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187
             +   +   R      +          +    + G        +   Y+ E        
Sbjct: 267 --QQYEIAGVRTQQPSTANIQTQLILGDKNEAATFGSVKWVPPDSALLYTTED------- 317

Query: 188 HNTHGMAVFNDEASGTP 204
                  V  DEA+  P
Sbjct: 318 --EKYDVVIVDEAASIP 332


>gi|242018331|ref|XP_002429631.1| DNA replication helicase DNA2, putative [Pediculus humanus
           corporis]
 gi|212514610|gb|EEB16893.1| DNA replication helicase DNA2, putative [Pediculus humanus
           corporis]
          Length = 1157

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/162 (11%), Positives = 48/162 (29%), Gaps = 9/162 (5%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
           + ++ ++      V  S        I    G GKT   A ++   ++   G +++   ++
Sbjct: 718 KILKKLNKEQQKAVVKSILCNEYLLIKGPPGTGKTETTASLVKVFLAL--GKTVLIAGHT 775

Query: 117 ETQLKNTLWAEVS-KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
            + + N L      ++L + P +   ++                + +        I    
Sbjct: 776 HSSVDNILLRLSDVEYLRLGPLKSIKKILHDKSFSKLIENCGSAEDVRKLYDRKVIASTC 835

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217
              +                  DE+S    + ++ +   F  
Sbjct: 836 LGLDS----DFIAKKKFDVCIVDESSQV--LQSEILRPLFCS 871


>gi|194043541|ref|XP_001927668.1| PREDICTED: probable ATP-dependent RNA helicase DDX60 [Sus scrofa]
          Length = 1704

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 51/199 (25%), Gaps = 27/199 (13%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P  WQ E ++ VD +  +             I A    GKT  + + M  ++       +
Sbjct: 757 PDTWQRELLDVVDKNESA------------VIVAPTSSGKTYASYYCMERVLREGDDGVV 804

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + +A ++  +        +++   LP           +    +  + L   + I      
Sbjct: 805 VYVAPTKALVNQVAATVQNRFRKNLPDGEAL----CGVFTRDYRHDALNSQILITVPACF 860

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEAS----GTPDIINKSILGFFTELNPNRFWIM 226
                    R              V  DE           I + +L              
Sbjct: 861 EILLLA-PHRQAWVKRIR-----YVIFDEVHCLGGEIGAEIWEHLLVMIRCP-FLALSAT 913

Query: 227 TSNTRRLNGWFYDIFNIPL 245
            SN   L  W   +     
Sbjct: 914 ISNPEHLTEWLQSVKRYWK 932


>gi|84687759|ref|ZP_01015631.1| Possible DNA helicase [Maritimibacter alkaliphilus HTCC2654]
 gi|84664260|gb|EAQ10752.1| Possible DNA helicase [Rhodobacterales bacterium HTCC2654]
          Length = 1569

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/236 (8%), Positives = 66/236 (27%), Gaps = 20/236 (8%)

Query: 10   KLEQELHEMLMHAECVLSFK-----NFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64
               + + ++    +    +      +F+  + P  +        + P  +  E ++ +  
Sbjct: 900  YAAKGMEDIETAQKLAHDYFAMDEADFMKAWMPGRM--SEFRRQATPQTY-AEIVDDLGN 956

Query: 65   HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI-STRPGMSIICI----ANSETQ 119
               + +   +       + AG G GKT +    + +L+   R   + I +     ++  +
Sbjct: 957  TTQAQIVRDDREQTNVLVLAGPGSGKTRVLVHRVAYLVRIKREDPNGILVLAYNRHAAAE 1016

Query: 120  LKNTLWAEV---SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
            ++  L   +   ++++++L           +       AE  +    +      +     
Sbjct: 1017 IRERLRRLIGDDARFVTVLTIHALAMRLVGASFAGRAGAETPDFDTLLTDAARLLRGDGL 1076

Query: 177  SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG----FFTELNPNRFWIMTS 228
             +   +            +  DE           I         + +         
Sbjct: 1077 DKVEAEALRETLIQGFRWILVDEYQDVGPEEYALIAAVAGRSIDDPDQRISLFAVG 1132


>gi|319788397|ref|YP_004147872.1| DNA helicase II [Pseudoxanthomonas suwonensis 11-1]
 gi|317466909|gb|ADV28641.1| DNA helicase II [Pseudoxanthomonas suwonensis 11-1]
          Length = 726

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 69/270 (25%), Gaps = 26/270 (9%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           + AG G GKT +    + WL              +   L  T     +K    +  R   
Sbjct: 27  VLAGAGSGKTRVLTHRIAWLNEVH-------GVPAHGILAVTF---TNKAAGEMRSRADM 76

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
           ++++ S          +   +     +      ++     D            +  DE  
Sbjct: 77  QLRNGSRGMWIGTFHGIAHRLLRLHWNEARLPESFQVLDSDDQQRLVKRVVQQLELDE-G 135

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI 261
             P       +    +       I   N                  ++ YQ        +
Sbjct: 136 RFPPRQITWWINAQKDEGRRPQHIQAVNDP--------WTESMRRAYELYQERCDRAGLV 187

Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMG 321
           D             D+         +F +  ++ F   N I+ A  R    D     ++ 
Sbjct: 188 DFAELLLRAHELLRDNPALLQHYRTRFRELLIDEFQDTNAIQYAFVRVLAGDTGRVFVV- 246

Query: 322 CDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
                 G D   +   RG  +E++  +   
Sbjct: 247 ------GDDDQAIYGWRGAKVENVQQFLRD 270


>gi|299755713|ref|XP_001828834.2| DNA ATP-dependent helicase [Coprinopsis cinerea okayama7#130]
 gi|298411348|gb|EAU92841.2| DNA ATP-dependent helicase [Coprinopsis cinerea okayama7#130]
          Length = 1625

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/276 (9%), Positives = 64/276 (23%), Gaps = 28/276 (10%)

Query: 53   RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
             +QL+ +  +       +N               G+GKT  +  ++ +L  T        
Sbjct: 773  EYQLKGLNWLATLYEQGINGILADEM--------GLGKTVQSISLLAYLAETHDIWGPFL 824

Query: 113  IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            +    + L N    E+++++  L    ++                 ++ +          
Sbjct: 825  VVAPASTLHN-WQQEITRFVPNLRALPYWGNVKDRTTLR---KVWSKKDLTYTKDAPFHV 880

Query: 173  CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232
              T  +                +  DEA    +             +     ++T     
Sbjct: 881  LITSYQLVTQDQQYFQRIKWQYMILDEAQNIKNSS-SVRWKTLLGFHCRNRLLLTGTP-- 937

Query: 233  LNGWFYDIFNIPLEDW---KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
                   I N   E W                 + +    I     +      E      
Sbjct: 938  -------IQNSMQELWALLHFIMPSLFDSHDEFNEWFSKDIENAAENKGSKLNEHQ---L 987

Query: 290  QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
            ++      P          +        + +  D++
Sbjct: 988  RRLHMILKPFMLRRVKRHVQNELSEKIEIDIFVDLS 1023


>gi|223039222|ref|ZP_03609512.1| CRISPR-associated helicase Cas3 [Campylobacter rectus RM3267]
 gi|222879583|gb|EEF14674.1| CRISPR-associated helicase Cas3 [Campylobacter rectus RM3267]
          Length = 753

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 56/183 (30%), Gaps = 19/183 (10%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
           +++ +  E +  + + N         K  I A  GIGKT L   + L +   +     + 
Sbjct: 226 KYRTKAKELIFQNFNHNTQKD-----KFLIKAPTGIGKTFLALNLALQIAKIKGDKRRVI 280

Query: 113 IANSETQLKNTLWAEVSKWL---SMLPHRHWFEMQSLSL-HPSGWYAELLEQSMGIDSKH 168
            A   T + +    E  K +   ++L + H    +S  +        E  +    +    
Sbjct: 281 TAIPFTSIIDQTHNEYQKIISDQNVLKYHHLTSYKSSKIDKEKDNEDEQEQFMQKVFLAD 340

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAV----------FNDEASGTPDIINKSILGFFTEL 218
                   +      +V   N +   +            DE    P ++ K I   F E 
Sbjct: 341 IWHENFIVTTFNQLFYVFFSNHNRDNLKLETLRDSVIIIDEIQNIPRVLLKPISAAFNEF 400

Query: 219 NPN 221
              
Sbjct: 401 TKR 403


>gi|68487366|ref|XP_712454.1| hypothetical protein CaO19.8783 [Candida albicans SC5314]
 gi|68487658|ref|XP_712310.1| hypothetical protein CaO19.1192 [Candida albicans SC5314]
 gi|46433687|gb|EAK93119.1| hypothetical protein CaO19.1192 [Candida albicans SC5314]
 gi|46433842|gb|EAK93270.1| hypothetical protein CaO19.8783 [Candida albicans SC5314]
          Length = 1426

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/167 (12%), Positives = 47/167 (28%), Gaps = 18/167 (10%)

Query: 38   WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97
            W I      +       Q+  ++ V      ++    P           G GKTT+ A +
Sbjct: 959  WEIPDAETFNPD-----QIAALKKVFSADDYSLIVGMP-----------GTGKTTVIAQL 1002

Query: 98   MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
            +  L++ R   S++  + + + + N L       +  L   +   +          + + 
Sbjct: 1003 IKVLVAQR--KSVLLTSYTNSAVDNILLKLKDLDIEFLRIGYPQRVHKDIKDYIPEFKDS 1060

Query: 158  LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
            +       + +        +                    DEAS   
Sbjct: 1061 ITTYEQYVNTYMRPKVIATTCLSITDVCFNLRYSFDYCIVDEASQIT 1107


>gi|296819731|ref|XP_002849895.1| DEAD/DEAH box helicase [Arthroderma otae CBS 113480]
 gi|238840348|gb|EEQ30010.1| DEAD/DEAH box helicase [Arthroderma otae CBS 113480]
          Length = 1829

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/222 (6%), Positives = 58/222 (26%), Gaps = 31/222 (13%)

Query: 50   QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
            +P +WQ + ++ +D +                + A    GKT ++ + M  ++       
Sbjct: 820  EPDKWQRDVLDEIDAN------------RSLFVVAPTSAGKTFISFYAMKKVLQQDDNGV 867

Query: 110  IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
            ++ +A ++  +        +++     H         ++H   +          + +  +
Sbjct: 868  LVYVAPTKALVNQVAAEIQARFSKSFKHGGKSVW---AIHTRDYRINNPTGCQVLVTIPH 924

Query: 170  TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF------------TE 217
             +     +     ++    +     +  DE        +  +                  
Sbjct: 925  ILQIMLLAPANATSW----SCRVKRIIFDEIHCIGQADDGVVWEQLLLLAPCPIIALSAT 980

Query: 218  LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
            +   + +    ++ +               +   +       
Sbjct: 981  VGNPQAFYKWLSSTQRANGIDITMVEHRHRYSDLRKYVYKPP 1022


>gi|182625300|ref|ZP_02953074.1| putative phage terminase, large subunit [Clostridium perfringens D
           str. JGS1721]
 gi|177909458|gb|EDT71905.1| putative phage terminase, large subunit [Clostridium perfringens D
           str. JGS1721]
          Length = 548

 Score = 42.2 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 52/197 (26%), Gaps = 13/197 (6%)

Query: 54  WQLEFMEAVD--VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML--WLISTRPGMS 109
           WQ  F+EA+         V              GR  GKT   + + L  W      G  
Sbjct: 57  WQKAFVEAIFSIKIYDDEVGRYVRKYQDVLFLVGRKNGKTPFISAICLAEWFCGEM-GKK 115

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I+C +N+  Q    L A  +                  +       +  +      +K  
Sbjct: 116 ILCASNNYEQAGLMLDAMDAMREESPRLEKVTRKTVKGIFFGNPKQKKKKGKFTRQNKGC 175

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSILGFFTELNPNRFWIMTS 228
                  +  +          +      DE      D I   +    +  +   ++ +T+
Sbjct: 176 IKKISAKTGAKE-------GRNIGIGAVDEVFEMKDDSIVMPVRQALSTQDEPLYFELTT 228

Query: 229 NTRRLNGWFYDIFNIPL 245
                +G+  +      
Sbjct: 229 EGFTNDGYLDERLIEAR 245


>gi|332022731|gb|EGI63007.1| Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
            [Acromyrmex echinatior]
          Length = 2115

 Score = 42.2 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 51/219 (23%), Gaps = 28/219 (12%)

Query: 48   FSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107
            F Q +  Q +   A+                   + A  G GKTT+  + +L L++  P 
Sbjct: 1300 FPQFNPIQTQVFNAIYNSDD-----------NVFVGAPTGSGKTTIAEFAVLRLLTQNPE 1348

Query: 108  MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
               + + + E   +       + W +       F  Q              +  +    +
Sbjct: 1349 GRCVYMVSKEALAELVY----ADWAAK------FGQQLGRKVVLLSGETGTDLKLLAKGQ 1398

Query: 168  HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL-------NP 220
                T   +           +  +      DE           +    +         + 
Sbjct: 1399 IIITTADKWDVLSRRWKQRKNVQNIQLFIVDELQLIGGEEGPVLEVACSRARYISSQLDK 1458

Query: 221  NRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
                I  S +             P      +    R V 
Sbjct: 1459 PTRIIALSASLADAKDAAQWLGAPAAATFNFHPTVRPVP 1497


>gi|327349688|gb|EGE78545.1| DEAD/DEAH box helicase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1904

 Score = 42.2 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/303 (9%), Positives = 74/303 (24%), Gaps = 51/303 (16%)

Query: 50   QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
            +P  WQ + ++ +D +                + A    GKT ++ + M  ++       
Sbjct: 839  EPDAWQRQVLDEIDGN------------RSLFVVAPTSAGKTFISFYAMKRILEDDDNSV 886

Query: 110  IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
            ++ +A ++  +        +++     H         +           +  + +    +
Sbjct: 887  LVYVAPTKALVNQVAAEIQARFSKSFKHGGKSVWGIHTRDYRINNPTGCQVLVTV---PH 943

Query: 170  TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM--- 226
             +     +     ++    ++    +  DE      +    +      L P     +   
Sbjct: 944  ILQIMLLAPANASSW----SSRVKRIIFDEIHCIGQVEEGVVWEQLLLLAPCPIIALSAT 999

Query: 227  TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
              N +  + W          D    +   R  +     +       +    D        
Sbjct: 1000 VGNPQAFSNWLNMTQKANGIDLTMIEHRHRYSDLRKYVYKPPKKFHFNGLPDSVPFA--- 1056

Query: 287  QFPQQEVNNF-----------------IPHNYIEEAMSREAIDDLYAPLIMG-------C 322
              P    N F                 +P +   EA     + +                
Sbjct: 1057 --PTSLDNAFGMAFMHPVACIVDRLRGMPEDLTLEARDCWLLWNAMKKYQTADFPVPKSL 1114

Query: 323  DIA 325
            D A
Sbjct: 1115 DPA 1117


>gi|239615191|gb|EEQ92178.1| DEAD/DEAH box helicase [Ajellomyces dermatitidis ER-3]
          Length = 1901

 Score = 42.2 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/303 (9%), Positives = 74/303 (24%), Gaps = 51/303 (16%)

Query: 50   QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
            +P  WQ + ++ +D +                + A    GKT ++ + M  ++       
Sbjct: 836  EPDAWQRQVLDEIDGN------------RSLFVVAPTSAGKTFISFYAMKRILEDDDNSV 883

Query: 110  IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
            ++ +A ++  +        +++     H         +           +  + +    +
Sbjct: 884  LVYVAPTKALVNQVAAEIQARFSKSFKHGGKSVWGIHTRDYRINNPTGCQVLVTV---PH 940

Query: 170  TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM--- 226
             +     +     ++    ++    +  DE      +    +      L P     +   
Sbjct: 941  ILQIMLLAPANASSW----SSRVKRIIFDEIHCIGQVEEGVVWEQLLLLAPCPIIALSAT 996

Query: 227  TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
              N +  + W          D    +   R  +     +       +    D        
Sbjct: 997  VGNPQAFSNWLNMTQKANGIDLTMIEHRHRYSDLRKYVYKPPKKFHFNGLPDSVPFA--- 1053

Query: 287  QFPQQEVNNF-----------------IPHNYIEEAMSREAIDDLYAPLIMG-------C 322
              P    N F                 +P +   EA     + +                
Sbjct: 1054 --PTSLDNAFGMAFMHPVACIVDRLRGMPEDLTLEARDCWLLWNAMKKYQTADFPVPKSL 1111

Query: 323  DIA 325
            D A
Sbjct: 1112 DPA 1114


>gi|261192386|ref|XP_002622600.1| DEAD/DEAH box helicase [Ajellomyces dermatitidis SLH14081]
 gi|239589475|gb|EEQ72118.1| DEAD/DEAH box helicase [Ajellomyces dermatitidis SLH14081]
          Length = 1901

 Score = 42.2 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/303 (9%), Positives = 74/303 (24%), Gaps = 51/303 (16%)

Query: 50   QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
            +P  WQ + ++ +D +                + A    GKT ++ + M  ++       
Sbjct: 836  EPDAWQRQVLDEIDGN------------RSLFVVAPTSAGKTFISFYAMKRILEDDDNSV 883

Query: 110  IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
            ++ +A ++  +        +++     H         +           +  + +    +
Sbjct: 884  LVYVAPTKALVNQVAAEIQARFSKSFKHGGKSVWGIHTRDYRINNPTGCQVLVTV---PH 940

Query: 170  TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM--- 226
             +     +     ++    ++    +  DE      +    +      L P     +   
Sbjct: 941  ILQIMLLAPANASSW----SSRVKRIIFDEIHCIGQVEEGVVWEQLLLLAPCPIIALSAT 996

Query: 227  TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
              N +  + W          D    +   R  +     +       +    D        
Sbjct: 997  VGNPQAFSNWLNMTQKANGIDLTMIEHRHRYSDLRKYVYKPPKKFHFNGLPDSVPFA--- 1053

Query: 287  QFPQQEVNNF-----------------IPHNYIEEAMSREAIDDLYAPLIMG-------C 322
              P    N F                 +P +   EA     + +                
Sbjct: 1054 --PTSLDNAFGMAFMHPVACIVDRLRGMPEDLTLEARDCWLLWNAMKKYQTADFPVPKSL 1111

Query: 323  DIA 325
            D A
Sbjct: 1112 DPA 1114


>gi|332291697|ref|YP_004430306.1| type III restriction protein res subunit [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169783|gb|AEE19038.1| type III restriction protein res subunit [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 887

 Score = 42.2 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/203 (11%), Positives = 48/203 (23%), Gaps = 38/203 (18%)

Query: 32  VMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT 91
               +PW               +Q  F++    H   +  +         + A  G GKT
Sbjct: 6   FHFIYPW-------------RTYQERFLKDFKSHASDDHLH---------VVAPPGSGKT 43

Query: 92  TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151
            L   MM      R     + +A + T         +           +   +  ++  S
Sbjct: 44  VLGLEMM-----RRVNEKTLVLAPTIT---------IRNQWEQRMFECFVSEEDCTIPLS 89

Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211
               E    +       +  +      +               +  DEA    +   K +
Sbjct: 90  RNIKEPAHITFATYQSLHAFSKNEMEGDMDRLVAFFAEAGIKHIVLDEAHHLKNEWWKPL 149

Query: 212 LGFFTELNPNRFWIMTSNTRRLN 234
                         +T+     +
Sbjct: 150 FALKKLEG--TLTALTATPPYDS 170


>gi|296453256|ref|YP_003660399.1| DNA repair helicase Rad25 [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296182687|gb|ADG99568.1| DNA repair helicase Rad25 [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 1068

 Score = 42.2 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 64/221 (28%), Gaps = 35/221 (15%)

Query: 16  HEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFS-QPHRWQLEFMEAVDVHCHSNVNNSN 74
                  +    FK       P     + LE    QP+  Q E +  +        +   
Sbjct: 221 LTEEWIKQYEEDFK---KYAPPRHEILQSLEGHDIQPNAMQQEALANLKKIREQGEH--- 274

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
               +  I +  G GKT L+A    + +       ++ IA    Q +  L   +  +  +
Sbjct: 275 ----RAIIVSATGTGKTYLSA----FDVRECQPKRMLYIA----QQQMILQTAMKSYQKV 322

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
           L                         S   D ++   T +T    +P+      +     
Sbjct: 323 LGCD------------ESELGLYSGTSKQQDRRYVFATVQTMR--QPEVLAQFKSDEFDY 368

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
           V  DE         + ++  F + +      MT+   R +G
Sbjct: 369 VLVDEVHHAGAEGYQRVINHFKDAD--FMLGMTATPERTDG 407


>gi|213406579|ref|XP_002174061.1| helicase SWR1 [Schizosaccharomyces japonicus yFS275]
 gi|212002108|gb|EEB07768.1| helicase SWR1 [Schizosaccharomyces japonicus yFS275]
          Length = 1603

 Score = 42.2 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/254 (11%), Positives = 65/254 (25%), Gaps = 26/254 (10%)

Query: 22   AECVLSFKNFVMRFFPWG-IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKC 80
            AE      NF       G    +P     +   +QL+ +  +       +N         
Sbjct: 816  AEMNEDELNFQNPTMVNGMEIEQPKMLMCKLKEYQLKGLNWLANLYEQGINGILADEM-- 873

Query: 81   AISAGRGIGKTTLNAWMMLWLISTRP---GMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
                  G+GKT  +  +M +L  T        +I  A++          E+++++  L  
Sbjct: 874  ------GLGKTVQSISVMAYLAETHNIWGPFLVIAPASTLHN----WQQEITRFVPKLKC 923

Query: 138  RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
              ++           +     ++++            T  +          +     +  
Sbjct: 924  IPYWGSMKDRKILRKF---WCKKNLTYSEDSPFHVVVTSYQLVVSDAQYFQSMKWQYMIL 980

Query: 198  DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257
            DEA         S              ++T     +     +++ +              
Sbjct: 981  DEAQAIKSSS-SSRWKSLLAFKCRNRLLLTGTP--IQNTMQELWALL----HFIMPTLFD 1033

Query: 258  VEGIDSGFHEGIIS 271
                 S +    I 
Sbjct: 1034 SHNEFSEWFSKDIE 1047


>gi|154340597|ref|XP_001566255.1| mitochondrial DEAD box protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134063574|emb|CAM39757.1| putative mitochondrial DEAD box protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 544

 Score = 42.2 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 46/177 (25%), Gaps = 20/177 (11%)

Query: 43  KPLEHFSQPH---RWQLEFMEAV----DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95
            PL  F++     RW  E + A+                         A  G GKT   A
Sbjct: 89  TPLASFAELRDAPRWLAEGLRALKYPSTTDIQKFTIPLLADGHDVIGLAPTGSGKTVAFA 148

Query: 96  WMMLWLISTRPGMS--IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
              L      P  +  ++ +A +   ++ T      K    L        ++    P   
Sbjct: 149 VPALAAFKRNPDGTPSVLVLAPTRELVQQTT-----KVFQSLGCGQVRVCEAYGGAPRDL 203

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS 210
            A  L       +    +       +           +   +  DEA    D+  + 
Sbjct: 204 QARCLR------NGCDALVACPGRLKDFLDSGELSIRNLSFLVFDEADRLLDMGFQV 254


>gi|195437039|ref|XP_002066452.1| GK18288 [Drosophila willistoni]
 gi|194162537|gb|EDW77438.1| GK18288 [Drosophila willistoni]
          Length = 1051

 Score = 42.2 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 35/328 (10%), Positives = 78/328 (23%), Gaps = 45/328 (13%)

Query: 40  IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99
            +   +  F     W    +  +      N+           I    G GKT      +L
Sbjct: 538 NEKYEMFLFDSKIDWYNPLLNDIQKQAVFNILRGESDNMPYIIFGPPGTGKTVTMIETIL 597

Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEV------SKWLSMLPHRHWFEMQSLSLHPSGW 153
            ++   P   ++    S       L   +         +  +  ++  E  S+  +   +
Sbjct: 598 QIMHCLPQSRLLVATPSNMAADLILQRILDSGSVPKDQIIRMVSQNQIEKDSIPENLKSY 657

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH-------------------NTHGMA 194
              L   + G        T           F+G                     + H   
Sbjct: 658 CGTLDLSASGTMGTMEEATTSGMRLGCKKDFIGRRRVTVSTCTTMGSLLQLQFPSGHFTH 717

Query: 195 VFNDEASGTPDIINKSILGFFT--------ELNPNRFWIMTSNTRRLNGWFYD------- 239
           V  DEA    +    + +   +          +P +   +  N+      +         
Sbjct: 718 VLVDEAGQCTEPETITPIALLSRKRSQVILSGDPYQLQPVIVNSFSAANGYCKSFLERVL 777

Query: 240 IFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299
            F    +D  R+   +     + +    G  S   + +  + I               P 
Sbjct: 778 EFEPYSKDLNRFPTTSGYNPFVVTKLLNGYRSLPSIMTLYSEIFYDNDLISNVSATDSPQ 837

Query: 300 NYIEEAMSREAIDD-----LYAPLIMGC 322
             +   +      D      +  + +G 
Sbjct: 838 EKVLAKVQGIFPPDSKMSPSHGVVFIGV 865


>gi|38154332|gb|AAR12152.1| UL89 [Human herpesvirus 5]
          Length = 79

 Score = 42.2 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 1/74 (1%)

Query: 186 GPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIP 244
                +   +  DEA         +ILGF  +      +I ++NT      F   + N P
Sbjct: 1   SIRGQNFHLLLVDEAHFIKKEAFNTILGFLAQNTTKIIFISSTNTTSDATCFLTRLNNAP 60

Query: 245 LEDWKRYQIDTRTV 258
            +            
Sbjct: 61  FDMLNVVSYVCEEH 74


>gi|2909851|gb|AAC40814.1| UL89 protein [human herpesvirus 5]
          Length = 378

 Score = 42.2 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 1/74 (1%)

Query: 186 GPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIP 244
                +   +  DEA         +ILGF  +      +I ++NT      F   + N P
Sbjct: 1   SIRGQNFHLLLVDEAHFIKKEAFNTILGFLAQNTTKIIFISSTNTTSDATCFLTRLNNAP 60

Query: 245 LEDWKRYQIDTRTV 258
            +            
Sbjct: 61  FDMLNVVSYVCEEH 74


>gi|15668850|ref|NP_247653.1| DEAD-box ATP dependent DNA helicase [Methanocaldococcus jannaschii
           DSM 2661]
 gi|2500540|sp|Q58083|H669_METJA RecName: Full=Probable ATP-dependent RNA helicase MJ0669
 gi|1591383|gb|AAB98663.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 367

 Score = 42.2 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/198 (9%), Positives = 45/198 (22%), Gaps = 25/198 (12%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
            F +P   Q++ +                  +     A  G GKT   A  ++ L++   
Sbjct: 25  GFEKPTDIQMKVI-----------PLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENN 73

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
           G+  I +  +            +  +  L      ++         +  + +   +    
Sbjct: 74  GIEAIILTPTRELAIQV-----ADEIESLKGNKNLKI------AKIYGGKAIYPQIKALK 122

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFF--TELNPNRF 223
               +                +  +      DEA         K +         +    
Sbjct: 123 NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRIL 182

Query: 224 WIMTSNTRRLNGWFYDIF 241
               +  R +        
Sbjct: 183 LFSATMPREILNLAKKYM 200


>gi|323127628|gb|ADX24925.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 366

 Score = 42.2 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 31/318 (9%), Positives = 70/318 (22%), Gaps = 56/318 (17%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIF---KCAISAGRGIGKTTLNAWMMLWLISTRPG 107
           P +WQ +  +    H       +   IF        +  G GKT    +  L  ++ +  
Sbjct: 6   PPQWQEKLDQVAFTHLTPIQEQAFQPIFDGKNLLGVSPTGTGKTLAYLFPTLLTLTPKKS 65

Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
             ++ +A +        +    +W   L       +   S                +   
Sbjct: 66  QQLLILAPNTELAGQI-FEVAKEWAEPLGLTAQLFISGTSQKRQIE---------RLKKG 115

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS----------------GTPDIINKSI 211
              +                       +  DE                    P       
Sbjct: 116 SEILIGTPGRIFELIKLKKIKMMSVNTIILDEYDELLSDSQYDFVQRISRYVPRDHQMVY 175

Query: 212 LGFF-----TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFH 266
           +        T L  N   I  S         + +     E     +            F 
Sbjct: 176 MSATNKVDQTSLEENTLLIDLSEQTNDAIQHFYLMTDKRERTDLLRKFANIPHFRALVFF 235

Query: 267 EGIISRYGLDSDV-----------------ARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309
             +      +  +                  R  IL +F   +++  +  + +   +  +
Sbjct: 236 NSLSDLGATEERLQYNGAAAVSLASDINVKFRKTILEKFKSHQLSLLLATDLVARGIDID 295

Query: 310 AIDDLYAPLIMGCDIAGE 327
                    ++  D+A +
Sbjct: 296 -----NLDYVIHFDVARD 308


>gi|331236920|ref|XP_003331118.1| helicase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309310108|gb|EFP86699.1| helicase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 1410

 Score = 42.2 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 45/162 (27%), Gaps = 27/162 (16%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI----STRP 106
           P  +Q E +E                     I A  G GKT +   ++ W      +   
Sbjct: 42  PRLYQTELLEE-------------AKKRNIIIRADTGTGKTIVAVNLIAWTAVKTKANNK 88

Query: 107 GMSI-ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
              I   +  +           + K  ++    +  ++Q    +   W++EL E  +   
Sbjct: 89  NHQIQAFLVPTRPLAHQQA-EYIQKHCTLRIKAYTGDLQPELWNIRKWHSELNEVDV--- 144

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207
                 T + + +     +          +  DEA       
Sbjct: 145 ---LVSTAQIFYDLISKGYWKL--EDVSLLIFDEAHHCRKNH 181


>gi|295400221|ref|ZP_06810201.1| NERD domain protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|312110527|ref|YP_003988843.1| UvrD/REP helicase [Geobacillus sp. Y4.1MC1]
 gi|294978000|gb|EFG53598.1| NERD domain protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215628|gb|ADP74232.1| UvrD/REP helicase [Geobacillus sp. Y4.1MC1]
          Length = 639

 Score = 42.2 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 66/252 (26%), Gaps = 12/252 (4%)

Query: 46  EHFSQPHRWQLEFMEAVDVHC-----HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
             F  P  +Q + + ++           N+        +  I    G GKT + A     
Sbjct: 212 AEFRPPVPYQDQILLSLHDIKAMDLHQENLAKQIGDKHRL-IRGVAGSGKTLILASRAKL 270

Query: 101 LISTRPGMSIICIANSETQLKNT--LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
           L    P   I+ +  + +  +    L   + +    L    + +   L+    G      
Sbjct: 271 LAKEHPDWKILILCYNISLAQGIRQLINHMLREPDSLFDFDFTKHDGLADTAYGQIIVRN 330

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218
                      T     Y  E+ +           A+  DE           I       
Sbjct: 331 FHEWLKHDLKITEQQIPYILEKLEKGEAI-LPTYDAILVDEGQDFSSDWLALISKLLNPE 389

Query: 219 NPNRFWI---MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275
             +   +     +  RR   +  D         K   I+ R    I     +   +   L
Sbjct: 390 TQSLLLVEDRAQTIYRRKRSYAQDTGLNFQGRSKILTINYRNTAQIVKFAWDFYRTHSVL 449

Query: 276 DSDVARIEILGQ 287
            + VA  E  G+
Sbjct: 450 KNKVAHREFEGE 461


>gi|162329381|ref|YP_001604182.1| putative helicase [Acidianus filamentous virus 6]
 gi|157310758|emb|CAJ31578.1| putative helicase [Acidianus filamentous virus 6]
          Length = 564

 Score = 42.2 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 65/236 (27%), Gaps = 34/236 (14%)

Query: 10  KLEQELHEMLMHAECVLSFKNFVMR-FFPWGIKGKPLEHFSQPHRWQLE-------FMEA 61
             E+E+  +         +  F       W +              Q          +  
Sbjct: 128 YNEEEIL-LAWE-----HYDYFTTYRGLYWKLLNISEIRLQPFTNLQYHDITLKNFELRE 181

Query: 62  VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121
             ++   +  N    I +  I A  G GK+ ++    L ++  +    II   NS T LK
Sbjct: 182 YQINSIKSWINDVNIIGEGIIKAPTGAGKSVISILATLEMLKNKRNPKIIYAVNSTTLLK 241

Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
                              F  +               +     +         YS+++ 
Sbjct: 242 Q---------------FQQFAKKEDLNFAIVSGELNELKKEKDSNLIALSISYYYSQKKR 286

Query: 182 DTFVGPHN--THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
           + +    +   +   +  DEA  TP     SI     +   +    +T+   R +G
Sbjct: 287 NKYNELRDIVNNADLIIVDEAHHTP---ANSIKALLLDSPGSIRLGLTATPFREDG 339


>gi|47214668|emb|CAG00904.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 447

 Score = 42.2 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/191 (10%), Positives = 48/191 (25%), Gaps = 10/191 (5%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVN-NSNPTIFK-CAISAGRGIGKTTLNAWMMLWLIST 104
                   Q E + A+       +         +   +SA  G GKT      ++ ++  
Sbjct: 45  GIDHFFPVQAEVIPAILEAAQQGLLIGRGGYRPRDICVSAPTGSGKTLAFVIPVVQVLMQ 104

Query: 105 RPGMSIICIA--NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
           R    +  +A   ++   +   +   S +      R        SL             +
Sbjct: 105 RVVCHVRALAVLPTKELAQQV-YKVFSAYAEGTSLRVLVLAGQRSLSAEQASLSEYRAGV 163

Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII-----NKSILGFFTE 217
                   +       +  +   G        +  DEA    D +     ++ +   +  
Sbjct: 164 RRSQADIIVATPGRLVDHINKKSGLKLDQLRFLIIDEADRMIDSMHQAWLSQVVKATYGT 223

Query: 218 LNPNRFWIMTS 228
                   + S
Sbjct: 224 GGGREASSIFS 234


>gi|86136246|ref|ZP_01054825.1| hypothetical protein MED193_19024 [Roseobacter sp. MED193]
 gi|85827120|gb|EAQ47316.1| hypothetical protein MED193_19024 [Roseobacter sp. MED193]
          Length = 1121

 Score = 42.2 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 53/200 (26%), Gaps = 19/200 (9%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS----MLPH 137
           I    G GKT ++A  +L     R G  +   +NS   ++N L   VS         +P 
Sbjct: 741 IQGPPGTGKTYVSARAIL--SLVRKGYRVGVASNSHEAIRNVLMGCVSAVEEGVQTEMPD 798

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
                      +P G      + +    +    +    +   R +            +F 
Sbjct: 799 LVHKVPSDNDGYPDGCAVRRTKSNDEAAAGGDVVGGTAFFFAREENIQAF-----DWLFV 853

Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK--RYQIDT 255
           DEA          +          R  ++  + ++L          P           + 
Sbjct: 854 DEAGQV------GLANMAAMGRSARNIVLVGDPQQLPQVIQGAHPEPANLSCLQWMLGEH 907

Query: 256 RTVEGIDSGFHEGIISRYGL 275
            TV      F       +  
Sbjct: 908 ATVPADRGIFLATTRRMHPE 927


>gi|331231179|ref|XP_003328253.1| DNA replication helicase Dna2 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309307243|gb|EFP83834.1| DNA replication helicase Dna2 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 1326

 Score = 42.2 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 43/118 (36%), Gaps = 3/118 (2%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKTT  A ++  LI    G +++  + + + + N L   V   + ML   +  ++ S 
Sbjct: 840 GTGKTTTIAELIKTLIGM--GKTVLLTSYTHSAVDNILSKLVDSKIDMLRLGNVDKVSSA 897

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
               +   ++  +    ++ K  +      +    +  +            DEAS   
Sbjct: 898 LRRFTLHESDPSQTMEALEKKLMSPPLVATTSLSINHPLFTR-RSFDYCIVDEASQVT 954


>gi|321466581|gb|EFX77576.1| hypothetical protein DAPPUDRAFT_54191 [Daphnia pulex]
          Length = 982

 Score = 42.2 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 10/135 (7%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            A++A RG GK+     + +         +I   + S   LK  L+  + K    L +  
Sbjct: 273 VALTAARGRGKSAAL-GLSMAAAVAFGYSNIFVTSPSPENLKT-LFEFIFKGFDALQYSE 330

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +          +   ++   +  D +            +              V  DE
Sbjct: 331 HEDYSITQSSNPEFNKAVVRVDIFHDHRQTIQYIHPTDAAKLGQAE--------LVVIDE 382

Query: 200 ASGTPDIINKSILGF 214
           A+  P  + K++LG 
Sbjct: 383 AAAIPLPLVKALLGP 397


>gi|258516762|ref|YP_003192984.1| CRISPR-associated helicase Cas3 [Desulfotomaculum acetoxidans DSM
           771]
 gi|257780467|gb|ACV64361.1| CRISPR-associated helicase Cas3 [Desulfotomaculum acetoxidans DSM
           771]
          Length = 801

 Score = 42.2 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 42/185 (22%), Gaps = 9/185 (4%)

Query: 38  WGIKGKPLEH--FSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95
           W      LE    S P   ++  + A       N   +   +++ A+    G GKT  + 
Sbjct: 227 WAELAGILEAKLSSYPQESKINGLRAEISLACRNFARNGSGVYQLAV--PTGSGKTLSSL 284

Query: 96  WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW--LSMLPHRHW--FEMQSLSLHPS 151
              L          I  I    T + +    E+        +   H     +        
Sbjct: 285 RYALNHAQECDKDRIFYIIP-YTTIIDQNAREIKNILGHEEMILEHHSNLIVADDEEEVV 343

Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211
            +          I          T            H+     +  DE    P       
Sbjct: 344 NYKLLTERWDSPIILTTMVQFLNTLFNGGTQDVRRLHHLANSVIIFDEIQAIPIKCISMF 403

Query: 212 LGFFT 216
               +
Sbjct: 404 NSALS 408


>gi|223590207|sp|A5DE68|FAL1_PICGU RecName: Full=ATP-dependent RNA helicase FAL1
 gi|190345565|gb|EDK37471.2| hypothetical protein PGUG_01569 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 397

 Score = 42.2 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 64/232 (27%), Gaps = 29/232 (12%)

Query: 5   ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64
           +  D++L++EL       +  +      M   P  +KG     F  P   Q   +  +  
Sbjct: 1   MDFDRELDEELEFTKSTKKVKIYPTFESMNLKPELLKGIYNYGFEAPSAIQSRAIMQI-- 58

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI-STRPGMSIICIANSETQLKNT 123
                   +             G GKT   +  +L  I +       + ++ +       
Sbjct: 59  -IRGRDTIAQAQS---------GTGKTATFSIGILSSIDTKSKDCQALVLSPT------- 101

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
              E+++ +  +   H  +  ++  H      ++ E    +    + I+           
Sbjct: 102 --RELAQQIENVI-EHLGDYMNVRSHACIGGTQVGEDVKKLQQGQHIISGTPGRVLDMIK 158

Query: 184 FVGPHNTHGMAVFNDEAS-----GTPDIINKSILGFFTELNPNRFWIMTSNT 230
                  H   +  DEA      G  + I + I               T   
Sbjct: 159 RRNIMPRHVKMLVLDEADELLTKGFKEQIYE-IYKTLPAGAQVVVVSATLTP 209


>gi|153005404|ref|YP_001379729.1| DEAD/DEAH box helicase domain-containing protein [Anaeromyxobacter
           sp. Fw109-5]
 gi|152028977|gb|ABS26745.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp.
           Fw109-5]
          Length = 680

 Score = 42.2 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 41/149 (27%), Gaps = 18/149 (12%)

Query: 60  EAVDVHCHSNVNNSNPTIFK-------CAISAGRGIGKTTLNAWMMLWLIST-RPGMSII 111
            A+  H +        + F+         + +  G GKT   A  +L  I+  R   S +
Sbjct: 33  RAIAEHGYERPTPVQVSTFRPVRDGKDVIVRSKTGTGKTAAFAIPILERIADGRRRPSAL 92

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +  +            +            + + LS+      A + EQ   +++    I
Sbjct: 93  VMCPTRELAIQVAQEFTA----------LAKHRDLSVVAVYGGASMGEQLQKLEAGAEII 142

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
                                M    DEA
Sbjct: 143 VGTPGRIYDHIRRRTLKLDETMVCCLDEA 171


>gi|262038656|ref|ZP_06012023.1| DNA repair helicase [Leptotrichia goodfellowii F0264]
 gi|261747326|gb|EEY34798.1| DNA repair helicase [Leptotrichia goodfellowii F0264]
          Length = 559

 Score = 42.2 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 54/193 (27%), Gaps = 37/193 (19%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI------- 102
           +P+  Q E +E + +   +          K  + A  G GKT L A  +           
Sbjct: 269 EPNSMQKEILEKLKITRKNGNK-------KGLVVAATGTGKTYLAAMDIKEFFKSKNIIG 321

Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
             R     + IA+ E  L+N      S  L +                     +   +  
Sbjct: 322 YNRKKARFLFIAHREELLENAA-KVFSNILEVA-------------------EDDFGKIF 361

Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222
           G   +          +     +          +  DE           ++ +F+   P  
Sbjct: 362 GGKKESDFEMIFASIQSLRSCYKEFRKDKFDYIIIDEFHHASADSYNKVINYFS---PEF 418

Query: 223 FWIMTSNTRRLNG 235
              +T+   R++G
Sbjct: 419 LLGLTATPERMDG 431


>gi|253687258|ref|YP_003016448.1| type I site-specific deoxyribonuclease, HsdR family [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251753836|gb|ACT11912.1| type I site-specific deoxyribonuclease, HsdR family [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 1031

 Score = 42.2 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/189 (11%), Positives = 52/189 (27%), Gaps = 7/189 (3%)

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICI---ANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
           +G GK+    W+  W+    P   ++ +      + Q+++                    
Sbjct: 278 QGSGKSLTMVWLAKWIRENMPNSRVLIVTDRTELDEQIESVFMGVDEDIYRTSSGNDLIA 337

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
             +    P    + + +     +++    T    +E +            + VF DE   
Sbjct: 338 TLNHPN-PWLICSLVHKFGRRSEAEDSAATDAFITELQQSLTKTFRAKGDLFVFVDECH- 395

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
                +  +    T + P   +I  + T  +         +       Y+ D    +G+ 
Sbjct: 396 --RTQSGKLHNAMTTILPEALFIGFTGTPLMKKDKKKSVEVFGPYIHTYKFDEAVADGVV 453

Query: 263 SGFHEGIIS 271
                    
Sbjct: 454 LDLRYEARD 462


>gi|255719266|ref|XP_002555913.1| KLTH0H00770p [Lachancea thermotolerans]
 gi|238941879|emb|CAR30051.1| KLTH0H00770p [Lachancea thermotolerans]
          Length = 1539

 Score = 42.2 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 2/118 (1%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKTTL   ++  L++   G +I+  + + + + N L    +  + +    H   +   
Sbjct: 1099 GTGKTTLIVEIVKSLVAR--GKTILLTSYTHSAIDNILIKLKNCDIDICRLGHKHRVHQE 1156

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
            +      + E        +         T      DT +   +     V  DEAS   
Sbjct: 1157 AWEFVPDFTEASTFEKFKEQVEKPSVVATTCLNIHDTLLSLRSKDFDYVILDEASQLS 1214


>gi|302653167|ref|XP_003018414.1| ABC bile acid transporter, putative [Trichophyton verrucosum HKI
            0517]
 gi|291182058|gb|EFE37769.1| ABC bile acid transporter, putative [Trichophyton verrucosum HKI
            0517]
          Length = 1338

 Score = 41.9 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 66/249 (26%), Gaps = 32/249 (12%)

Query: 7    TDQKLEQELHEMLMHAECVLSFKNFVM-RFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV- 64
            T     Q L       E  L   N V         +  P E+ S P  W      A +  
Sbjct: 1043 TFSSTLQTLVTAWTQLETALGAINRVRSYSQDVKDENLPNENGSVPDEWPESGAIAFNDV 1102

Query: 65   ---------HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
                          VN S     K AI    G GK++L +   L  +      +I+    
Sbjct: 1103 SASYDPSLGPVLKGVNLSINAGEKVAICGRTGSGKSSLVS--CLLRMLEMDSGTILI--- 1157

Query: 116  SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS---LHPSGWYAELLEQSMGIDSKHYTIT 172
                +      +V   L+ LP   +F   ++            E +  S+        + 
Sbjct: 1158 DGIDISTISRQQVRSRLNTLPQEPFFLYGTVRDNVDPLQLADDEAVIGSLQDVGLWEFLE 1217

Query: 173  CRTYSEERPDTFVGPHNTHGMA------------VFNDEA-SGTPDIINKSILGFFTELN 219
             R   +E        H    +             +  DEA S      +K +     E  
Sbjct: 1218 ARGGLDEEVSEDKLSHGQRQLFCLARAVVKQGNILIMDEATSSVDAETDKVMEDVIREKF 1277

Query: 220  PNRFWIMTS 228
                 I  +
Sbjct: 1278 KGMTVIAIA 1286


>gi|254556152|ref|YP_003062569.1| prophage Lp3 protein 15, terminase large subunit [Lactobacillus
           plantarum JDM1]
 gi|254045079|gb|ACT61872.1| prophage Lp3 protein 15, terminase large subunit [Lactobacillus
           plantarum JDM1]
          Length = 638

 Score = 41.9 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 36/327 (11%), Positives = 84/327 (25%), Gaps = 43/327 (13%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMML 99
                        WQ    +A+        N S    F  A+ +  R  GKT L   ++ 
Sbjct: 100 PDVESGKPMPLMVWQ----QAILCLLQGWRNESGEKRFTYALISVARTNGKTYLMNILLT 155

Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159
           +      G             +        K    L     +  +S S       A+ + 
Sbjct: 156 YGYLIEAGNRKNLDFAYSGTTEQIS----KKGFRYLGSTIDYLAESQSYFKKRIKAKEIN 211

Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
            S  +     +             +   H    +     +A+   D+++K   G   + N
Sbjct: 212 ASADLIQSFKSRNQILRLTANSGKWDSYHCNTAVLDEYGDAAYDDDVLSKLSSGQIHQTN 271

Query: 220 PNRFWIMTSNTRRLNGWFYDIFNIPL------------EDWKRYQIDTRTVEGIDSGF-- 265
                I T+        F+D   +                +  ++ D+         +  
Sbjct: 272 KQLIAISTAYENSNVPMFHDYQRLTRVIEKDNERKSETSLFLCWEQDSIDETDRPDTWEK 331

Query: 266 -------------------HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306
                               E        +    +   L  +     + ++  + I++++
Sbjct: 332 SNPLLGLAEMHERLLKGLLDEKDKRESTGNVAWFQNRNLNMWLAVSKDKYLQLDDIQKSV 391

Query: 307 S-REAIDDLYAPLIMGCDIAGEGGDKT 332
              ++       + +G D++    D +
Sbjct: 392 VPNDSFTIDGRDVYVGLDLSRLDDDSS 418


>gi|229917516|ref|YP_002886162.1| type III restriction protein res subunit [Exiguobacterium sp. AT1b]
 gi|229468945|gb|ACQ70717.1| type III restriction protein res subunit [Exiguobacterium sp. AT1b]
          Length = 959

 Score = 41.9 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 63/186 (33%), Gaps = 32/186 (17%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P+  Q   ++ +D               +  + +  G GKT L A    + +       +
Sbjct: 223 PNDMQRSALDGIDAVRQQGHQ-------RALVVSATGTGKTYLAA----FDVRRYEPKRM 271

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + + + E  LK  +  +  K +      +     +  +               IDSK+  
Sbjct: 272 LFVVHREQILKKAI-NDFHKVIGGNIEDYGILSGTSRV---------------IDSKYVF 315

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
            T +T S++  +T           +  DE+        + +L +FT   P     MT+  
Sbjct: 316 ATIQTISKD--ETLYQFAQETFDYILIDESHRAGANTYQKLLEYFT---PKFLLGMTATP 370

Query: 231 RRLNGW 236
            R +G+
Sbjct: 371 ERSDGY 376


>gi|288959052|ref|YP_003449393.1| phage terminase large subunit [Azospirillum sp. B510]
 gi|288911360|dbj|BAI72849.1| phage terminase large subunit [Azospirillum sp. B510]
          Length = 662

 Score = 41.9 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/170 (13%), Positives = 53/170 (31%), Gaps = 26/170 (15%)

Query: 38  WGIKGKPLEHFS--QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95
           W  +   L   S   P+ +Q E ++A+            P + +  +     +G T + +
Sbjct: 56  WAERHARLYDGSVFHPYPYQREILDAMTD----------PVVERITLMKSARVGYTQMLS 105

Query: 96  WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
             + + I+ RP   I+ +  +    ++               +   E  S     +G  +
Sbjct: 106 AALGYFIAQRP-SKIMIVQPTLEDAEDYS-------------KDTIEPLSDWPVLAGLLS 151

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
           +   +  G   K  +    +      ++           +  DE  G P 
Sbjct: 152 DGGTRRKGETIKRKSFPGGSLKITGANSPRAFRRIDLDVLLFDEVDGYPP 201


>gi|148700123|gb|EDL32070.1| DNA2 DNA replication helicase 2-like (yeast) [Mus musculus]
          Length = 998

 Score = 41.9 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 38/322 (11%), Positives = 80/322 (24%), Gaps = 21/322 (6%)

Query: 4   LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63
           + STD    + L E+++       F  ++    P   K          ++ Q + M+ V 
Sbjct: 519 MESTDPS--KRLRELIIDFREP-QFIAYLSSVLPHDAKDTVANILKGLNKPQRQAMKRV- 574

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
                         +   +    G GKTT    ++  L +   G S++  + + + + N 
Sbjct: 575 ---------LLSKDYTLIVGMP-GTGKTTTICALVRILSAC--GFSVLLTSYTHSAVDNI 622

Query: 124 LWAE--VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
           L            L   H                     S+    + Y       +    
Sbjct: 623 LLKLAKFKVGFLRLGQSHKVHPDIQKFTEEEICRSRSIASLAHLEELYNSHPIVATTCMG 682

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
                           DEAS     +   +   F                 +        
Sbjct: 683 INHPIFSRKTFDFCIVDEASQISQPV--CLGPLFFSRRFVLVGDHQQLPPLVVNREARAL 740

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301
            +    +KR + +   V  +   +          +      ++     +         N 
Sbjct: 741 GMSESLFKRLERNESAVVQLTVQYRMNRKIMSLSNKLTYAGKLECGSDRVANAVLALPNL 800

Query: 302 IEEAMSREAIDDLYA-PLIMGC 322
            +  +S +   D    P + G 
Sbjct: 801 KDARLSLQLYADYSDSPWLAGV 822


>gi|283837769|ref|NP_796346.2| DNA2-like helicase [Mus musculus]
 gi|119368660|sp|Q6ZQJ5|DNA2L_MOUSE RecName: Full=DNA2-like helicase; AltName: Full=DNA replication
           ATP-dependent helicase-like homolog
          Length = 1062

 Score = 41.9 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 38/322 (11%), Positives = 80/322 (24%), Gaps = 21/322 (6%)

Query: 4   LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63
           + STD    + L E+++       F  ++    P   K          ++ Q + M+ V 
Sbjct: 583 MESTDPS--KRLRELIIDFREP-QFIAYLSSVLPHDAKDTVANILKGLNKPQRQAMKRV- 638

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
                         +   +    G GKTT    ++  L +   G S++  + + + + N 
Sbjct: 639 ---------LLSKDYTLIVGMP-GTGKTTTICALVRILSAC--GFSVLLTSYTHSAVDNI 686

Query: 124 LWAE--VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
           L            L   H                     S+    + Y       +    
Sbjct: 687 LLKLAKFKVGFLRLGQSHKVHPDIQKFTEEEICRSRSIASLAHLEELYNSHPIVATTCMG 746

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
                           DEAS     +   +   F                 +        
Sbjct: 747 INHPIFSRKTFDFCIVDEASQISQPV--CLGPLFFSRRFVLVGDHQQLPPLVVNREARAL 804

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301
            +    +KR + +   V  +   +          +      ++     +         N 
Sbjct: 805 GMSESLFKRLERNESAVVQLTVQYRMNRKIMSLSNKLTYAGKLECGSDRVANAVLALPNL 864

Query: 302 IEEAMSREAIDDLYA-PLIMGC 322
            +  +S +   D    P + G 
Sbjct: 865 KDARLSLQLYADYSDSPWLAGV 886


>gi|109732330|gb|AAI15717.1| Dna2 protein [Mus musculus]
          Length = 966

 Score = 41.9 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 38/322 (11%), Positives = 80/322 (24%), Gaps = 21/322 (6%)

Query: 4   LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63
           + STD    + L E+++       F  ++    P   K          ++ Q + M+ V 
Sbjct: 583 MESTDPS--KRLRELIIDFREP-QFIAYLSSVLPHDAKDTVANILKGLNKPQRQAMKRV- 638

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
                         +   +    G GKTT    ++  L +   G S++  + + + + N 
Sbjct: 639 ---------LLSKDYTLIVGMP-GTGKTTTICALVRILSAC--GFSVLLTSYTHSAVDNI 686

Query: 124 LWAE--VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
           L            L   H                     S+    + Y       +    
Sbjct: 687 LLKLAKFKVGFLRLGQSHKVHPDIQKFTEEEICRSRSIASLAHLEELYNSHPIVATTCMG 746

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
                           DEAS     +   +   F                 +        
Sbjct: 747 INHPIFSRKTFDFCIVDEASQISQPV--CLGPLFFSRRFVLVGDHQQLPPLVVNREARAL 804

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301
            +    +KR + +   V  +   +          +      ++     +         N 
Sbjct: 805 GMSESLFKRLERNESAVVQLTVQYRMNRKIMSLSNKLTYAGKLECGSDRVANAVLALPNL 864

Query: 302 IEEAMSREAIDDLYA-PLIMGC 322
            +  +S +   D    P + G 
Sbjct: 865 KDARLSLQLYADYSDSPWLAGV 886


>gi|37359766|dbj|BAC97861.1| mKIAA0083 protein [Mus musculus]
          Length = 1078

 Score = 41.9 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 38/322 (11%), Positives = 80/322 (24%), Gaps = 21/322 (6%)

Query: 4   LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63
           + STD    + L E+++       F  ++    P   K          ++ Q + M+ V 
Sbjct: 599 MESTDPS--KRLRELIIDFREP-QFIAYLSSVLPHDAKDTVANILKGLNKPQRQAMKRV- 654

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
                         +   +    G GKTT    ++  L +   G S++  + + + + N 
Sbjct: 655 ---------LLSKDYTLIVGMP-GTGKTTTICALVRILSAC--GFSVLLTSYTHSAVDNI 702

Query: 124 LWAE--VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
           L            L   H                     S+    + Y       +    
Sbjct: 703 LLKLAKFKVGFLRLGQSHKVHPDIQKFTEEEICRSRSIASLAHLEELYNSHPIVATTCMG 762

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
                           DEAS     +   +   F                 +        
Sbjct: 763 INHPIFSRKTFDFCIVDEASQISQPV--CLGPLFFSRRFVLVGDHQQLPPLVVNREARAL 820

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301
            +    +KR + +   V  +   +          +      ++     +         N 
Sbjct: 821 GMSESLFKRLERNESAVVQLTVQYRMNRKIMSLSNKLTYAGKLECGSDRVANAVLALPNL 880

Query: 302 IEEAMSREAIDDLYA-PLIMGC 322
            +  +S +   D    P + G 
Sbjct: 881 KDARLSLQLYADYSDSPWLAGV 902


>gi|26390571|dbj|BAC25919.1| unnamed protein product [Mus musculus]
          Length = 1062

 Score = 41.9 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 38/322 (11%), Positives = 80/322 (24%), Gaps = 21/322 (6%)

Query: 4   LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63
           + STD    + L E+++       F  ++    P   K          ++ Q + M+ V 
Sbjct: 583 MESTDPS--KRLRELIIDFREP-QFIAYLSSVLPHDAKDTVANILKGLNKPQRQAMKRV- 638

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
                         +   +    G GKTT    ++  L +   G S++  + + + + N 
Sbjct: 639 ---------LLSKDYTLIVGMP-GTGKTTTICALVRILSAC--GFSVLLTSYTHSAVDNI 686

Query: 124 LWAE--VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
           L            L   H                     S+    + Y       +    
Sbjct: 687 LLKLAKFKVGFLRLGQSHKVHPDIQKFTEEEICRSRSIASLAHLEELYNSHPIVATTCMG 746

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241
                           DEAS     +   +   F                 +        
Sbjct: 747 INHPIFSRKTFDFCIVDEASQISQPV--CLGPLFFSRRFVLVGDHQQLPPLVVNREARAL 804

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301
            +    +KR + +   V  +   +          +      ++     +         N 
Sbjct: 805 GMSESLFKRLERNESAVVQLTVQYRMNRKIMSLSNKLTYAGKLECGSDRVANAVLALPNL 864

Query: 302 IEEAMSREAIDDLYA-PLIMGC 322
            +  +S +   D    P + G 
Sbjct: 865 KDARLSLQLYADYSDSPWLAGV 886


>gi|316966601|gb|EFV51154.1| putative Sec63 domain protein [Trichinella spiralis]
          Length = 1792

 Score = 41.9 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 57/242 (23%), Gaps = 25/242 (10%)

Query: 59   MEAVDVHCHSNVNNSNPTIFKCA--------ISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
            +E +      + N     +F+          + A  G GKT      +L L    P    
Sbjct: 1060 LEELYTDEIKSFNPIQTQVFRVFYENKDNVFVGAPHGSGKTICAELAILQLFKKNPNGKC 1119

Query: 111  ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
            + IA  E  L + ++    KW         F  +             ++  +    +   
Sbjct: 1120 VYIAPLEP-LCDIVY---EKW------ELKFGKKMGKSVVILTGETAVDLKLLAKGQVII 1169

Query: 171  ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF-------TELNPNRF 223
             T   +           H  +      D+                       T+L+    
Sbjct: 1170 STPEKWDVLSRRWKQRKHVQNVGLYIADDLHFVGGENGPVYEVTCSRMRFMSTQLDTPLR 1229

Query: 224  WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283
             +  S                 ++   +  + R +          I         +A+  
Sbjct: 1230 IVGLSVPLSNAKDVGQWLGCSSQNTFNFHPNVRPMPLEVHILGFNITHTASRLDAMAKQV 1289

Query: 284  IL 285
             L
Sbjct: 1290 YL 1291


>gi|163754792|ref|ZP_02161914.1| hypothetical protein KAOT1_17893 [Kordia algicida OT-1]
 gi|161325733|gb|EDP97060.1| hypothetical protein KAOT1_17893 [Kordia algicida OT-1]
          Length = 887

 Score = 41.9 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 51/208 (24%), Gaps = 40/208 (19%)

Query: 24  CVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS 83
              S    +   F W               +Q +F+   D H + N  +         + 
Sbjct: 11  ISNSPFETLQFQFSW-------------RNYQEQFLAHFDTHLNDNHLH---------VV 48

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           A  G GKT L        +  R     I  A + T              +    R     
Sbjct: 49  APPGSGKTILG-----LEMLRRVQKKTIVFAPTLT------------IRNQWKDRLLSFF 91

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
            + +      +      S+   +           E + D  V        AV  DEA   
Sbjct: 92  TNDNAFADFSFNLKKPASLTFVTYQSLHAFYKTFETKEDFLVFFETYGIEAVVLDEAHHL 151

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTR 231
            +   K +     +        +T+   
Sbjct: 152 KNEWWKCLF-ALKDDRKLTTIALTATPP 178


>gi|56420639|ref|YP_147957.1| DNA/RNA helicase [Geobacillus kaustophilus HTA426]
 gi|56380481|dbj|BAD76389.1| DNA/RNA helicase [Geobacillus kaustophilus HTA426]
          Length = 815

 Score = 41.9 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 49/186 (26%), Gaps = 36/186 (19%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           QP   Q+E +E ++       +       K  +    G+GKT L A         R    
Sbjct: 223 QPRFAQVEALERLEAAYEEGYD-------KAMVVMATGLGKTYLAA------FFARRFSR 269

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           ++ IA+ E  L+                    +     + P              ++   
Sbjct: 270 VLFIAHREEILRQ------------------AKQSFERVIPDRTAGLYDGNQKEGNADMV 311

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
             +  T S ++              +  DE         + +        P     +T+ 
Sbjct: 312 FASIFTLSMKKH--LHSFRPDAFDLIIVDEFHHAAARSYERV---LCYFQPKFLLGITAT 366

Query: 230 TRRLNG 235
             R + 
Sbjct: 367 PDRSDN 372


>gi|13358147|ref|NP_078421.1| ATP-dependent RNA helicase [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170762030|ref|YP_001752667.1| ATP-dependent RNA helicase [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171920303|ref|ZP_02931651.1| ATP-dependent RNA helicase [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|183508613|ref|ZP_02958120.1| ATP-dependent RNA helicase [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701851|ref|ZP_02971513.1| ATP-dependent RNA helicase [Ureaplasma parvum serovar 6 str. ATCC
           27818]
 gi|11356748|pir||A82872 ATP-dependent RNA helicase UU582 [imported] - Ureaplasma
           urealyticum
 gi|6899592|gb|AAF30996.1|AE002157_1 ATP-dependent RNA helicase [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827607|gb|ACA32869.1| ATP-dependent RNA helicase [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171902717|gb|EDT49006.1| ATP-dependent RNA helicase [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|182676071|gb|EDT87976.1| ATP-dependent RNA helicase [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701147|gb|EDU19429.1| ATP-dependent RNA helicase [Ureaplasma parvum serovar 6 str. ATCC
           27818]
          Length = 443

 Score = 41.9 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 54/188 (28%), Gaps = 21/188 (11%)

Query: 31  FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
           F   +  W +     +   +P   QL+ M  +                     A  G GK
Sbjct: 3   FNSNYQKWILDSLINQKIFEPTPIQLKTMPLIAK------------RENIIGVAPTGTGK 50

Query: 91  TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
           T      +L  +     + +I I  +    +   ++++  +    P         L +  
Sbjct: 51  TLAFVLPILNNLDLSQKLQVIIITPTRELARQI-FSKIIVFKKHQPL--------LQVKM 101

Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS 210
                 + +Q     +K   +       ++  T       H  A+  DEA    D+   S
Sbjct: 102 LIGGESIDQQINSQLNKSQLLIATPTRLKQILTRQILDLHHVNALVFDEADMLMDLGFIS 161

Query: 211 ILGFFTEL 218
            L F    
Sbjct: 162 DLEFINSQ 169


>gi|303249526|ref|ZP_07335733.1| ATP-dependent helicase HepA [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307251848|ref|ZP_07533749.1| RNA polymerase-associated protein rapA [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302651600|gb|EFL81749.1| ATP-dependent helicase HepA [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306860540|gb|EFM92552.1| RNA polymerase-associated protein rapA [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 969

 Score = 41.9 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 29/261 (11%), Positives = 64/261 (24%), Gaps = 19/261 (7%)

Query: 33  MRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTI-FKCAISAGRGIGKT 91
                +         F  P R       ++  H           +  +  ++   G+GKT
Sbjct: 123 RFALRYRALQHQQAQFQSPLRGMRGIRASLIPHQLHIAKEVGQRVAPRVLLADEVGLGKT 182

Query: 92  TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151
                ++   + +     ++ +     Q +   W  V            F+ +  S    
Sbjct: 183 IEAGMILQQQLFSGRVERVLVLVPESLQHQ---W-LVEMLRRFNLKFSLFDEERCSDFDK 238

Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211
                        DS+   I    + E  P+       +H   +  DEA           
Sbjct: 239 ADEDGNDVSENPFDSEALVIASIDWLESSPNRAKQVLASHWDMLIVDEAHHL---EWSEN 295

Query: 212 LGFF-------TELNPNRFWIMTSNTR--RLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
                               ++T+          F  +  +  + +  Y   +   E  D
Sbjct: 296 EPSVGYQFVERLSKQTPAVLLLTATPEQLGQESHFARLALLDADRFYDYH--SFIAEQKD 353

Query: 263 SGFHEGIISRYGLDSDVARIE 283
                  ++    D  ++  E
Sbjct: 354 YKPVADAVATLLNDKPLSHDE 374


>gi|21910864|ref|NP_665132.1| putative terminase large subunit - phage associated [Streptococcus
           pyogenes MGAS315]
 gi|28876410|ref|NP_795631.1| putative terminase large subunit [Streptococcus pyogenes phage
           315.5]
 gi|28895446|ref|NP_801796.1| terminase large subunit [Streptococcus pyogenes SSI-1]
 gi|21905070|gb|AAM79935.1| putative terminase large subunit - phage-associated [Streptococcus
           pyogenes MGAS315]
 gi|28810692|dbj|BAC63629.1| terminase large subunit (G2P) hypothetical protein, phage SPP1
           [Streptococcus pyogenes SSI-1]
          Length = 96

 Score = 41.9 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
           NP I   A   GRG GK++  A  ++  +  +  ++ +CI  ++  L+ +++ ++   +S
Sbjct: 30  NPQILNIACKGGRGSGKSSNIA-FIISRLIIQYPVNAVCIRKTDNTLEQSVYEQIKWAIS 88

Query: 134 MLPHRHWF 141
                 +F
Sbjct: 89  EQGLERYF 96


>gi|301299633|ref|ZP_07205893.1| helicase C-terminal domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852777|gb|EFK80401.1| helicase C-terminal domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 556

 Score = 41.9 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 62/195 (31%), Gaps = 31/195 (15%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           +        +P++ Q E ++ +                K  I +  G GKT L A  +  
Sbjct: 76  EDNSNYSTIKPNKMQKEALKNL-------QKLRLLRETKGLIISATGTGKTYLAALDV-- 126

Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
                     + +A+ E  LK +L      +  +L          LS +           
Sbjct: 127 --KNYNPKRFLFVAHREQILKKSL----DSFHKVLGGDKKTNYGILSGNAK--------- 171

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220
               D+K+   T +T S+   +            +  DEA      I   +L +FT   P
Sbjct: 172 --NTDAKYLFATVQTLSK--AENLNQFKRDEFDYILIDEAHHVGSKIYGKLLDYFT---P 224

Query: 221 NRFWIMTSNTRRLNG 235
           +    MT+   R + 
Sbjct: 225 DFLLGMTATPERSDD 239


>gi|270002717|gb|EEZ99164.1| hypothetical protein TcasGA2_TC016163 [Tribolium castaneum]
          Length = 2421

 Score = 41.9 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 31/285 (10%), Positives = 61/285 (21%), Gaps = 52/285 (18%)

Query: 46   EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
            + F Q +  Q +   +V                   I A  G GKTT+  + +L L    
Sbjct: 1318 DKFPQFNPIQTQVFNSVYNGDD-----------NIFIGAPTGSGKTTIAEFAILRLFDKN 1366

Query: 106  PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
            P    + +   +   + T     + W +       F                 +  +   
Sbjct: 1367 PEGRCVYLVPKDALAELT----FADWHNK------FGQILGKKVVLLTGETGTDLKLLAK 1416

Query: 166  SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN------ 219
             +    T   +           +  +      DE           I    + +       
Sbjct: 1417 GQIVISTAEKWDVLSRRWKQRKNVQNVNLFIVDELHLIGGEDGPVIEVVCSRMRYISSQI 1476

Query: 220  -PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278
                  I  S +                    +    R V                    
Sbjct: 1477 EKPIRIIALSASLMDYRDVSQWLGCNANATFNFHPSVRPVPLELH--------------- 1521

Query: 279  VARIEILGQFPQQEVNNFIPHNY-IEEAMSREAIDDLYAPLIMGC 322
                 + G       +  I     +  A+ R      + P+I+  
Sbjct: 1522 -----VQGINITHNASRLIAMAKPVYNAVVR---YSPHKPVIVFV 1558


>gi|240276370|gb|EER39882.1| DNA replication ATP-dependent helicase dna2 [Ajellomyces capsulatus
            H143]
 gi|325089772|gb|EGC43082.1| DNA replication helicase Dna2 [Ajellomyces capsulatus H88]
          Length = 1609

 Score = 41.9 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 3/118 (2%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKTT  A ++        G S++  + + T + N L       +  L      ++   
Sbjct: 1102 GTGKTTTIAHII--RALASQGKSVLLTSYTHTAVDNILLKIKDDNIRTLRLGATTKIHPD 1159

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                +   A   E +  +   +        +    +     ++        DEAS   
Sbjct: 1160 VRKFADLAATPKETTEELKDIYENSRIVATTCLGINHP-IFNSRMFDFCIVDEASQIT 1216


>gi|123478324|ref|XP_001322325.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
 gi|121905169|gb|EAY10102.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
          Length = 1042

 Score = 41.9 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/274 (9%), Positives = 63/274 (22%), Gaps = 42/274 (15%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + +L +  +K ++   +  M +  +  F             G P    ++   WQ+E  +
Sbjct: 43  LKKLATKIKKPKEYTVDEEMTSLGIPPFLQHAYL------NGIPQPSITKLRDWQIELCK 96

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
                       +        +      GKT      +  ++       +I         
Sbjct: 97  D----------ENWRQGKNTVLLVPTSGGKTVAADLAVAQVLQENKNSKVIYTLPFVALA 146

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
                    ++         FE Q    + +   ++    ++         T        
Sbjct: 147 NEKYTEYEKRF---------FEYQVRPFYQNIGGSDFRRGNI------AICTYEKAHALL 191

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDI-----INKSILGFFTELNPNRFWIMTSNTRRLNG 235
                G ++     +  DE     +      I   IL      +  R   +T+     + 
Sbjct: 192 NSAIQGGYSHSIKLIIIDEVHMIGEEGRGSVIEALILKAKLMNDKPRLITLTATINESD- 250

Query: 236 WFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI 269
                               RT         +  
Sbjct: 251 -----CQKLANWIDGNTFIWRTRPTPIKQIIKKQ 279


>gi|91093851|ref|XP_970554.1| PREDICTED: similar to pre-mRNA-splicing helicase BRR2 [Tribolium
            castaneum]
          Length = 2137

 Score = 41.9 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 31/285 (10%), Positives = 61/285 (21%), Gaps = 52/285 (18%)

Query: 46   EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
            + F Q +  Q +   +V                   I A  G GKTT+  + +L L    
Sbjct: 1318 DKFPQFNPIQTQVFNSVYNGDD-----------NIFIGAPTGSGKTTIAEFAILRLFDKN 1366

Query: 106  PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
            P    + +   +   + T     + W +       F                 +  +   
Sbjct: 1367 PEGRCVYLVPKDALAELT----FADWHNK------FGQILGKKVVLLTGETGTDLKLLAK 1416

Query: 166  SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN------ 219
             +    T   +           +  +      DE           I    + +       
Sbjct: 1417 GQIVISTAEKWDVLSRRWKQRKNVQNVNLFIVDELHLIGGEDGPVIEVVCSRMRYISSQI 1476

Query: 220  -PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278
                  I  S +                    +    R V                    
Sbjct: 1477 EKPIRIIALSASLMDYRDVSQWLGCNANATFNFHPSVRPVPLELH--------------- 1521

Query: 279  VARIEILGQFPQQEVNNFIPHNY-IEEAMSREAIDDLYAPLIMGC 322
                 + G       +  I     +  A+ R      + P+I+  
Sbjct: 1522 -----VQGINITHNASRLIAMAKPVYNAVVR---YSPHKPVIVFV 1558


>gi|297617717|ref|YP_003702876.1| metal dependent phosphohydrolase [Syntrophothermus lipocalidus DSM
           12680]
 gi|297145554|gb|ADI02311.1| metal dependent phosphohydrolase [Syntrophothermus lipocalidus DSM
           12680]
          Length = 724

 Score = 41.9 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 36/255 (14%), Positives = 64/255 (25%), Gaps = 32/255 (12%)

Query: 11  LEQELHEMLMHAECVLSFKNFVMRFFPWG-----IKGKPLEHFSQPHRWQLEFMEAVDVH 65
             + L  ML          +  + FFP             E   +  + Q E +      
Sbjct: 159 QRELLIRMLFSVLIDADRLDTELHFFPERARLRDQGPTLAELAIRFRKDQEELLRQ-SED 217

Query: 66  CHSNVNNSNPTIFKCAI------------SAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113
             S VN     +++  +            +A  G GKT       L          II  
Sbjct: 218 RLSVVNEVRRDVYRACVDAAKSPQGWYSLTAPTGAGKTRSALAFALEHALANGHERIIFA 277

Query: 114 ANSETQL-------KNTLWAE-VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
               + +       ++ L  + V +  S +      + +   L             +   
Sbjct: 278 LPYTSIIDQNAEVYRSILGPDSVLEHHSQVKTSDEEDEEQRVLRMRLAEENWDVPLVVT- 336

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN---KSILGFFTELNPNR 222
                    +    RP +    H      +  DEA   P  +      +L    E     
Sbjct: 337 --TTVQLLESLFSNRPSSCRKIHRIAKSVLIFDEAQTLPPELLRPTMQVLKDLAENYGTT 394

Query: 223 FWIMTSNTRRLNGWF 237
             + T+    L   F
Sbjct: 395 VVLSTATQPALKDEF 409


>gi|159043541|ref|YP_001532335.1| type III restriction protein res subunit [Dinoroseobacter shibae
           DFL 12]
 gi|157911301|gb|ABV92734.1| type III restriction protein res subunit [Dinoroseobacter shibae
           DFL 12]
          Length = 938

 Score = 41.9 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 56/193 (29%), Gaps = 34/193 (17%)

Query: 43  KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102
                  +PH  Q E + A+        + S        + A  G+GKT L A+  +  +
Sbjct: 237 AEEGPPPEPHTIQQEALAALA------QSRSKGHRAGLVVLA-TGLGKTWLAAFDTIRAM 289

Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
           +      I+ +A+ +  L   + A                     + P            
Sbjct: 290 A----GRILFVAHRDEILTQAMAA------------------FRKVRPDAKLGRYTGAEK 327

Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222
             D++    + +T    R          H   +  DE         + ++  FT      
Sbjct: 328 EADAEILFASVQTL--GRIGHLRQFDRDHFDYIVVDEFHHAAARTYQKLIEHFTPG---F 382

Query: 223 FWIMTSNTRRLNG 235
              +T+   R +G
Sbjct: 383 LLGLTATPDRTDG 395


>gi|221123568|ref|XP_002167666.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
           [Hydra magnipapillata]
          Length = 635

 Score = 41.9 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/286 (10%), Positives = 70/286 (24%), Gaps = 46/286 (16%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLI------STRPGMSIICIANSETQLKNTLWAEVSKWLS 133
             + A  G GKT   A  +L  +        R    ++ +A +          EV K+  
Sbjct: 91  VIVQARTGTGKTLGFALPVLEKLKNIDSEQKRKSPLVLTLAPTRELAIQIC-KEVEKY-- 147

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
                   + + +++      A   +Q   + +    +                  +   
Sbjct: 148 --------KPRQMTISCFYGGAPYDKQEQELRNGIDFLVGTPGRILDHINKGRLDVSKLQ 199

Query: 194 AVFNDEASGTPDIIN-----KSILGFFTELNPN-RFWIMTSNT-----------RRLNGW 236
            V  DEA    D+       + +   +TE N         +              +    
Sbjct: 200 YVILDEADRMMDMGFQESMEEILSYAYTEDNKPQTLLFSATVPAWLQKNSEKYLTKNLKK 259

Query: 237 FYDIFNIPLE-----DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
           F  I     +     + K  +              +    ++G        +        
Sbjct: 260 FDLIGRDKNKGATTVEHKAIKCTYWDRPSTIKDIIQQYSGKFGKTIIFTSTKQEANELAL 319

Query: 292 E-----VNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGD 330
                  +  +  +  ++          +     ++  D+A  G D
Sbjct: 320 NSVINMDSQVLHGDIQQKQRELTLQSFRNGKFNCLIATDVAARGLD 365


>gi|198463449|ref|XP_001352828.2| GA21960 [Drosophila pseudoobscura pseudoobscura]
 gi|198151259|gb|EAL30329.2| GA21960 [Drosophila pseudoobscura pseudoobscura]
          Length = 697

 Score = 41.9 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 37/153 (24%), Gaps = 4/153 (2%)

Query: 60  EAVDVHCHSNVNNSNPTIFK-CAISAGRGIGKTTLNAWMMLWLISTRPGMSI--ICIANS 116
             V            P   +   +SA  G GKT   A  ++ L++ R    +  + +   
Sbjct: 170 RTVIPWILEAQGQPAPLRPRDICVSAPTGSGKTLAFAIPIVQLLNNRVRCKVRALVVLPV 229

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
                   +  +    S          +   L         + +          +T    
Sbjct: 230 AELALQV-FKVIRALCSKTELEVCLLSKQHRLEDEQEKLVEVYKGQIYSKADIVVTTPGR 288

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209
             +      G        +  DEA    D   +
Sbjct: 289 LVDHLHATKGFCLKSLKFLVIDEADRIMDAFFQ 321


>gi|90020224|ref|YP_526051.1| hypothetical protein Sde_0575 [Saccharophagus degradans 2-40]
 gi|89949824|gb|ABD79839.1| type III restriction enzyme, res subunit [Saccharophagus degradans
           2-40]
          Length = 895

 Score = 41.9 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 62/223 (27%), Gaps = 43/223 (19%)

Query: 27  SFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR 86
           S  N +     W               +Q   ++AV  H +           +  I A  
Sbjct: 2   SPFNEMEFRHSW-------------RPYQKRVLDAVHQHLNDK---------RLHIVAAP 39

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKTTL   + ++ +  +P    I ++ +   +++     ++ +  +        + + 
Sbjct: 40  GAGKTTL--GLEVFRLLGKP---AIVLSPT-RVIRDQWLDRLTDFCQLDDINKLNWVSNT 93

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN---------------TH 191
            L P    +   +      ++       T   +  +                       +
Sbjct: 94  LLTPKTLTSITYQALHSQFAQELNQQDTTQDADEAEELELDKGLKDAELNNFISILEQYN 153

Query: 192 GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
              +  DEA        +++      L       +T+     +
Sbjct: 154 IQVLILDEAHHLRAEWWRALEKVCNHLPNITLVSLTATPPYDS 196


>gi|198433360|ref|XP_002125539.1| PREDICTED: similar to DNA2 DNA replication helicase 2-like (yeast)
            [Ciona intestinalis]
          Length = 1322

 Score = 41.9 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/247 (8%), Positives = 54/247 (21%), Gaps = 10/247 (4%)

Query: 56   LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
             + +  ++      +     +     +    G GKTT    M+  L+    G+ ++  + 
Sbjct: 897  AQMLRGLNKTQRQAIKRVLISKDYTLVVGMPGSGKTTTIVAMIRILLLC--GLRVLVTSY 954

Query: 116  SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL---EQSMGIDSKHYTIT 172
            + + + N L   +      L      ++    L  +             +      Y + 
Sbjct: 955  THSAVDNLLLKLIKYKTRFLRLGRPNQVHPNVLPYTEAVLSQNLKSPTELQKLYDEYRVV 1014

Query: 173  CRTYSEERPDTFVGPHNTH---GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
              T        F      +         DEAS         +   F              
Sbjct: 1015 GCTCLSVTSHIFFAIPGQNRPIFDVCIVDEASQIAQP--ACLAPLFHSERFVLVGDHLQL 1072

Query: 230  TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
               +              ++R       +  +   +          +       +    P
Sbjct: 1073 PPLVVSQEAKKMGADESLFRRLTSHKPALCELTLQYRMNKEIMALSNHVTYEGRLECAHP 1132

Query: 290  QQEVNNF 296
                   
Sbjct: 1133 TVAEATV 1139


>gi|156848392|ref|XP_001647078.1| hypothetical protein Kpol_1050p80 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156117761|gb|EDO19220.1| hypothetical protein Kpol_1050p80 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1505

 Score = 41.9 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 43/118 (36%), Gaps = 2/118 (1%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKTT+ A ++  L++ +   +I+  + + + + N L    +  ++++       +   
Sbjct: 1063 GTGKTTVIAEIIKILVANK--KTILLTSYTHSAVDNVLIKMSNTNMNIIRLGSKQRVHPE 1120

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
            S   +  Y  +      ++  +      T      D  +         V  DEAS   
Sbjct: 1121 SQKYTLDYDSIDNYEQYLEVINSASVVATTCLGINDVMLTMREKDFDYVILDEASQVS 1178


>gi|99081143|ref|YP_613297.1| phage terminase GpA [Ruegeria sp. TM1040]
 gi|99037423|gb|ABF64035.1| Terminase large subunit (GP2) [Ruegeria sp. TM1040]
          Length = 650

 Score = 41.9 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/208 (11%), Positives = 49/208 (23%), Gaps = 28/208 (13%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            +Q E ++              P   + ++  G  +GKT        + I   P   ++ 
Sbjct: 58  PYQREVIDMTAD----------PRCNRISLMWGAQVGKTQTALAAQAYRIGFNPVSQMMM 107

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
                +Q   T W E        P     E  +  +        +  Q M      + + 
Sbjct: 108 ---QPSQGDLTTWLETK----FNPLVEENEDLAELIAKPRGRQGVNNQRMKSYPGGFLMF 160

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD----IINKSILGFFTELNPNRFWIMTS 228
             +       +           +  DE  G            +          R  +  S
Sbjct: 161 SWS------GSPKTMRGRSAPFIVCDETDGYDRTNEGHPVGLLWQRAATFGDQRLLLEIS 214

Query: 229 NTR-RLNGWFYDIFNIPLEDWKRYQIDT 255
               +   W    F    + +   +   
Sbjct: 215 TPTIKGGSWIEKSFEAGDQRYFYVRCPH 242


>gi|46143821|ref|ZP_00133947.2| COG0553: Superfamily II DNA/RNA helicases, SNF2 family
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126207798|ref|YP_001053023.1| ATP-dependent helicase HepA [Actinobacillus pleuropneumoniae L20]
 gi|189029406|sp|A3MZ32|RAPA_ACTP2 RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|126096590|gb|ABN73418.1| ATP-dependent helicase HepA [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 969

 Score = 41.9 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 29/261 (11%), Positives = 64/261 (24%), Gaps = 19/261 (7%)

Query: 33  MRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTI-FKCAISAGRGIGKT 91
                +         F  P R       ++  H           +  +  ++   G+GKT
Sbjct: 123 RFALRYRALQHQQAQFQSPLRGMRGIRASLIPHQLHIAKEVGQRVAPRVLLADEVGLGKT 182

Query: 92  TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151
                ++   + +     ++ +     Q +   W  V            F+ +  S    
Sbjct: 183 IEAGMILQQQLFSGRVERVLVLVPESLQHQ---W-LVEMLRRFNLKFSLFDEERCSDFDK 238

Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211
                        DS+   I    + E  P+       +H   +  DEA           
Sbjct: 239 ADEDGNDVSENPFDSEALVIASIDWLESSPNRAKQVLASHWDMLIVDEAHHLA---WSEN 295

Query: 212 LGFF-------TELNPNRFWIMTSNTR--RLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
                               ++T+          F  +  +  + +  Y   +   E  D
Sbjct: 296 EPSVGYQFVERLSKQTPAVLLLTATPEQLGQESHFARLALLDADRFYDYH--SFIAEQKD 353

Query: 263 SGFHEGIISRYGLDSDVARIE 283
                  ++    D  ++  E
Sbjct: 354 YKPVADAVATLLNDKPLSHDE 374


>gi|146295679|ref|YP_001179450.1| hypothetical protein Csac_0636 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409255|gb|ABP66259.1| protein of unknown function DUF815 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 440

 Score = 41.9 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 67/237 (28%), Gaps = 21/237 (8%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMR-FFPWGIKGKPLEHFSQPHRWQLEFM 59
           + + + T       L E L+       F  F     F W   G  L         +L+ +
Sbjct: 161 IEKFLDTSPWS--SLIEELVEFHKQNGFGIFARYKGFSW--DGNNLVGIENLDPIRLDSL 216

Query: 60  EAVDVHCHSNVNNSNPT-----IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
             +D      V N+        +    +   RG GK++    ++           +  + 
Sbjct: 217 VNIDRQKKIVVENTLAFLNGQRVNNILLYGSRGTGKSSTVKAILNEFSHMG----LRVVE 272

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
             + QL    + ++ + L  +P +    +  LS          L+  +    +       
Sbjct: 273 VYKDQLYT--FPKLVRILRDVPLKFIIFVDDLSFEDIEVNYTKLKAILEGSLEAMPQNVV 330

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
            Y+       V    +    + +DE          ++    +  +     +   +  
Sbjct: 331 IYATSNRRHLVKERFSDRNGLSDDEVHFRD-----TLEEKLSLADRFGIVVTYPSPT 382


>gi|154346446|ref|XP_001569160.1| helicase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134066502|emb|CAM44296.1| putative helicase [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 1284

 Score = 41.9 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 62/233 (26%), Gaps = 23/233 (9%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI- 110
             +Q   +  +     +N+N               G+GKT     ++ +    R      
Sbjct: 263 RHYQRSALRWMVHLYENNLNGILADEM--------GLGKTVQTIALLCYFAEYRNDWGPH 314

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + +  +   L     AE+ +W   L    +             +           S+   
Sbjct: 315 LIVVPTTVVLN--WKAELERWAPGLKVLTYIGSTKERQQLRKGWT----------SEDAF 362

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
             C T                   +  DEA    +           +L      ++T   
Sbjct: 363 HVCVTSYNLVVQDRKAFRRRPWGFLVLDEAHHVKN-FMSLKWQSLFDLQAEYRLLLTGTP 421

Query: 231 -RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI 282
            +      + +F+  L     ++ +    E   +   E I  R  L+ D+ R 
Sbjct: 422 LQNSIMELWSLFHFLLPFASAFRSNVEFKEWFSNPMDEMITGRSTLNEDIVRR 474


>gi|59711051|ref|YP_203827.1| ATP-dependent RNA helicase SrmB [Vibrio fischeri ES114]
 gi|59479152|gb|AAW84939.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 413

 Score = 41.9 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 77/303 (25%), Gaps = 38/303 (12%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMSI 110
            E          +              SA  G GK+       L  +   P        I
Sbjct: 19  EEIDYQRPTQVQAMTIPEALEGKDILASAPTGTGKSAAFLLPALQHLDDFPRREPGPARI 78

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + +  +         A+ ++ L+       F +     +          Q +        
Sbjct: 79  LILTPTRELAIQV--ADEARQLAKYTRHKVFTITGGISYQDHADILATTQDI-------- 128

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP-NRFWIMTSN 229
           +                       +  DEA    D+    ++   ++     +   + S 
Sbjct: 129 VVATPGRLMEYIEAERFDCRAIETLILDEADRMLDMGFGPVVDRLSKECRWRKQTFLFSA 188

Query: 230 T---RRLNGWFYDIFNIP---------LEDWKRYQIDTR-TVEGIDSGFHEGIISRYGLD 276
           T   R + G+  D+ N P          E  K  Q   R           + I++     
Sbjct: 189 TLEGRGVEGFTADLLNEPAEINAEPSRRERKKITQWYHRADNMAHKIDLLKNILTEQAER 248

Query: 277 SDVA--RIEILGQFPQQEVNNFIPHNYIE-------EAMSREAIDDLYAPLIMGCDIAGE 327
           S V     E L +         IP  +I+          +     D    +++  D+A  
Sbjct: 249 SIVFVKTRERLAELRGHLETAKIPCAWIQGEMAQESRNNAISRFRDGTVNVLIATDVAAR 308

Query: 328 GGD 330
           G D
Sbjct: 309 GID 311


>gi|328721366|ref|XP_001942895.2| PREDICTED: transcriptional regulator ATRX homolog [Acyrthosiphon
           pisum]
          Length = 1045

 Score = 41.9 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 86/253 (33%), Gaps = 23/253 (9%)

Query: 45  LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLIS 103
           L  F +PH  Q+E ++ +      ++          +I A   G+GKT L    ++  + 
Sbjct: 334 LVKFLKPH--QVEGIKFLWNSVFESLARIKEHKGNGSILAHCMGLGKT-LQIIALVHTLF 390

Query: 104 TRPG---MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
             P     +++ I  + T        E  KWL  +     F + + +   +    + +  
Sbjct: 391 RYPETGIKTVLVITPNAT--IENWCKEFHKWLQDIDEEKNFLVLNFTDSKTYEGRKNIVD 448

Query: 161 SMGIDSKHYTITCRTYS--------EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212
               D      + + +         ++ P    G  +     V  DE        + +I 
Sbjct: 449 EWKRDHGVLVTSYQLFRSVVNYKNIDKFPTISEGLVDPGPDLVICDE-GHILKNHSTAIS 507

Query: 213 GFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISR 272
                +   R  ++T    + N      ++  ++  +   + +   +   + F   I + 
Sbjct: 508 KSVNRIKTLRRIVLTGTPLQNN---LREYHCMVDFIRPNLLGSI--KDFTNRFINPITNG 562

Query: 273 YGLDSDVARIEIL 285
              DS+V  ++I+
Sbjct: 563 QYSDSNVRDVKIM 575


>gi|257466094|ref|ZP_05630405.1| ATP-dependent helicase DinG [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917251|ref|ZP_07913491.1| ATP-dependent helicase DinG [Fusobacterium gonidiaformans ATCC
           25563]
 gi|317058656|ref|ZP_07923141.1| ATP-dependent helicase DinG [Fusobacterium sp. 3_1_5R]
 gi|313684332|gb|EFS21167.1| ATP-dependent helicase DinG [Fusobacterium sp. 3_1_5R]
 gi|313691126|gb|EFS27961.1| ATP-dependent helicase DinG [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 698

 Score = 41.9 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 52/166 (31%), Gaps = 18/166 (10%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            + Q++ M A+     ++         K  I AG G GKT       L          +I
Sbjct: 22  RKEQVDMMNAIRESLEAD--------RKIIIEAGTGTGKTLAYLIPTLEWAIENK-KKVI 72

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
           C  N+    +  L+ ++   ++       F    +    +     L    +  +S    +
Sbjct: 73  CTTNTINLQEQLLFKDLP--IAKNIINKHFSYLLVKGRNNYICKRLFHNFILGNS----L 126

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASG---TPDIINKSILGF 214
              T S E+   F    +   M  F D+A         I + I   
Sbjct: 127 DISTLSSEQKKQFDYLKSWGKMTEFGDKAELPFEVDSDIWEMIQSS 172


>gi|257452110|ref|ZP_05617409.1| ATP-dependent helicase DinG [Fusobacterium sp. 3_1_5R]
          Length = 692

 Score = 41.9 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 52/166 (31%), Gaps = 18/166 (10%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            + Q++ M A+     ++         K  I AG G GKT       L          +I
Sbjct: 16  RKEQVDMMNAIRESLEAD--------RKIIIEAGTGTGKTLAYLIPTLEWAIENK-KKVI 66

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
           C  N+    +  L+ ++   ++       F    +    +     L    +  +S    +
Sbjct: 67  CTTNTINLQEQLLFKDLP--IAKNIINKHFSYLLVKGRNNYICKRLFHNFILGNS----L 120

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASG---TPDIINKSILGF 214
              T S E+   F    +   M  F D+A         I + I   
Sbjct: 121 DISTLSSEQKKQFDYLKSWGKMTEFGDKAELPFEVDSDIWEMIQSS 166


>gi|313227383|emb|CBY22530.1| unnamed protein product [Oikopleura dioica]
          Length = 1980

 Score = 41.9 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 41/175 (23%), Gaps = 21/175 (12%)

Query: 45   LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            L  FS  +  Q +    +  H                + A  G GKT      ML +   
Sbjct: 1138 LYSFSHFNPIQTQVFHCLYHHDS-----------NALVGAPTGSGKTACAELSMLKVFRD 1186

Query: 105  RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
             P    + IA  +  +K  +      W            +              +Q   +
Sbjct: 1187 YPNGKCVYIAPLKALVKERM----DDW------SKKLGGKLGKKLVEMTGDIAPDQKAIV 1236

Query: 165  DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
             +     T   +           +      +  DE     +     +    T  N
Sbjct: 1237 SADIIITTPEKWDGISRSWQTRKYVRDVRLIVIDEIHMLGEDRGPVLESIVTRTN 1291


>gi|313216756|emb|CBY38004.1| unnamed protein product [Oikopleura dioica]
          Length = 1046

 Score = 41.9 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 41/175 (23%), Gaps = 21/175 (12%)

Query: 45  LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
           L  FS  +  Q +    +  H                + A  G GKT      ML +   
Sbjct: 204 LYSFSHFNPIQTQVFHCLYHHDS-----------NALVGAPTGSGKTACAELSMLKVFRD 252

Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
            P    + IA  +  +K  +      W            +              +Q   +
Sbjct: 253 YPNGKCVYIAPLKALVKERM----DDW------SKKLGGKLGKKLVEMTGDIAPDQKAIV 302

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
            +     T   +           +      +  DE     +     +    T  N
Sbjct: 303 SADIIITTPEKWDGISRSWQTRKYVRDVRLIVIDEIHMLGEDRGPVLESIVTRTN 357


>gi|307166155|gb|EFN60404.1| Activating signal cointegrator 1 complex subunit 3 [Camponotus
            floridanus]
          Length = 2124

 Score = 41.9 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 21/177 (11%), Positives = 46/177 (25%), Gaps = 25/177 (14%)

Query: 45   LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            L +FS  +  Q +    +    +              + A  G GKT      M  +   
Sbjct: 1289 LYNFSHFNPIQTQIFHCLYHTDN-----------NVLLGAPTGSGKTIAAEIAMFRVFKQ 1337

Query: 105  RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
             P   ++ IA  +  ++      ++ W   L      ++  L           +   + I
Sbjct: 1338 YPDQKVVYIAPLKALVRER----INDWKIRLEEGLGKKVVEL--------TGDVSPDVKI 1385

Query: 165  DSKHYTITCRTYSEERPDTFVGPHN--THGMAVFNDEASGTPDIINKSILGFFTELN 219
             +    I       +         +       +  DE     +     +    +  N
Sbjct: 1386 IAGANVIVTTPEKWDGISRSWQTRSYVKKVALIVIDEIHLLGEDRGPVLEVIISRTN 1442


>gi|302817541|ref|XP_002990446.1| hypothetical protein SELMODRAFT_160867 [Selaginella moellendorffii]
 gi|300141831|gb|EFJ08539.1| hypothetical protein SELMODRAFT_160867 [Selaginella moellendorffii]
          Length = 483

 Score = 41.9 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 56/212 (26%), Gaps = 27/212 (12%)

Query: 2   PRLISTDQKLEQELHEMLMHAE-CVLSFKNF--VMRFFPWGIKGKPLEHFSQPHRWQLEF 58
           P+    + ++E ++ + L+       S K F  +    P          F +P + Q E 
Sbjct: 53  PKSEKLNDEVETKIEKELVEGNSLYTSAKTFEELKISEPLLRGIYSEMKFERPSKIQAET 112

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN--AWMMLWLISTRPGMSIICIANS 116
           +  +           NP        A  G GKTT      +     S       +C+  +
Sbjct: 113 LPLIM----------NPPHRNLVAQAHNGSGKTTCFVLGMLSRVNTSLHEPQ-ALCVCPT 161

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
                           +            ++        E ++ S+        I     
Sbjct: 162 RELA----------LQNQAVLERMARFTQITSTCIIPPTENIKSSLRGHIHDQVIFGTPG 211

Query: 177 SEERPD-TFVGPHNTHGMAVFNDEASGTPDII 207
           S ER           H   +  DEA    D  
Sbjct: 212 SLERAILNDRNLDVQHLNVLVFDEADHMLDQN 243


>gi|46447193|ref|YP_008558.1| putative ATP-dependent RNA helicase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400834|emb|CAF24283.1| putative ATP-dependent RNA helicase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 515

 Score = 41.9 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 49/228 (21%), Gaps = 17/228 (7%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
           E    +                     A  G GKT       L LI   PG  ++ +  +
Sbjct: 28  EAGFKIASPIQKQAIPVVLAGHDVVAQAHTGTGKTAAFGLPALHLIHDNPGSQLLVLTPT 87

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
                     E+ +    L  R        S  P             +      I     
Sbjct: 88  RELASQVS-DELFRLGRHLGIRTATICGGKSFRPQIEA---------LQRGVQVIVATPG 137

Query: 177 SEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFT--ELNPNRFWIMTSNTRRL 233
             +         +     V  DEA         ++I   FT             +     
Sbjct: 138 RLQDLLESDSLPDFRPAIVVLDEADEMLDMGFLEAIQRIFTFLPAKRQTLLFSATMP--- 194

Query: 234 NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR 281
                 + +  L+      +  +     D      +I     D  + R
Sbjct: 195 -SAIQKLAHQILKKPIFISVTQKETTNKDIKQVYYVIREDERDDAILR 241


>gi|332360308|gb|EGJ38121.1| ATP-dependent RNA helicase [Streptococcus sanguinis SK355]
          Length = 799

 Score = 41.9 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/175 (10%), Positives = 42/175 (24%), Gaps = 9/175 (5%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
            FS P     E    +     S     +  I++  +    G GKT L+       +  + 
Sbjct: 250 SFSHPTTSLNEIRSQIGERVKSRGEKDSTGIYRLDL--PTGAGKTNLSMRYAFHQLLDQN 307

Query: 107 GMSIICIANSETQLKNTLWAEVSKWL------SMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
                 I    + L+    +E+ K +          +       +     +     +   
Sbjct: 308 KSRCFYITPFLSVLEQNA-SEIRKVIGEVGVLEHHSNVVKQTADNDEKEAAMSDYLIESW 366

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
                        +T  + +        +     +  DE    P  +        
Sbjct: 367 DSQTVLTSMVQFFQTLFKTKSANIRRFSSLANSVLILDEVQSLPIEVTTLFNLTM 421


>gi|321259457|ref|XP_003194449.1| DNA replication helicase dna2 [Cryptococcus gattii WM276]
 gi|317460920|gb|ADV22662.1| DNA replication helicase dna2, putative [Cryptococcus gattii WM276]
          Length = 1100

 Score = 41.9 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 37/118 (31%), Gaps = 3/118 (2%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKTT  A ++        G S++  + + + +   L         +L   +  ++   
Sbjct: 650 GTGKTTTIAEII--KALVARGKSVLLTSYTHSAVDAILMKLTDVEFGVLRLGNIDKVHPD 707

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
             H +    E       +D++  T      +    D  +            DEAS   
Sbjct: 708 VQHLTLEAYEASASMDQLDARLMTPPVVAATCLAIDHPLFFRRR-FDYCIVDEASQIT 764


>gi|225076382|ref|ZP_03719581.1| hypothetical protein NEIFLAOT_01426 [Neisseria flavescens
           NRL30031/H210]
 gi|224952288|gb|EEG33497.1| hypothetical protein NEIFLAOT_01426 [Neisseria flavescens
           NRL30031/H210]
          Length = 664

 Score = 41.9 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 52/199 (26%), Gaps = 17/199 (8%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +  H           +F   +    G GKT  +    L          +I +    + +
Sbjct: 149 EILEHAVEQAAQPQG-LFTLTV--PTGGGKTFTSMAFALEHAKLHGMRRVIYVIPFTSII 205

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS-GWYAELLEQSMGIDSKHYTITCRTYS-- 177
           +    AE  K    L  +   E  S          A   +  +  ++    I   T    
Sbjct: 206 EQNA-AEFRKAFGELGEQAVLEHHSTFDDGKLQNEATKDKLRLASENWDAPIVVTTAVQF 264

Query: 178 -----EERPDTFVGPHNTHGMAVFNDEASGTPDI----INKSILGFFTELNPNRFWIMTS 228
                 +R       HN  G  +  DEA   P      I + I       + +      +
Sbjct: 265 FESLFADRSSRCRKLHNIAGSVIILDEAQMLPLNLLLPIMQVIKELAQNYHCSVVMCTAT 324

Query: 229 NTR-RLNGWFYDIFNIPLE 246
               +    FY  F    E
Sbjct: 325 QPAVQAENGFYRGFENMRE 343


>gi|115938662|ref|XP_797208.2| PREDICTED: similar to DEAD/H box 51 RNA helicase, partial
           [Strongylocentrotus purpuratus]
 gi|115969326|ref|XP_001196116.1| PREDICTED: similar to DEAD/H box 51 RNA helicase, partial
           [Strongylocentrotus purpuratus]
          Length = 720

 Score = 41.9 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/186 (12%), Positives = 45/186 (24%), Gaps = 12/186 (6%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI--ICIAN 115
            +E++    H+      P      ISA  G GKT   A  ++  +  R    +  + +  
Sbjct: 297 LLESLRDGIHTGHAGYRP--RDLCISAPTGSGKTLAYAIPIIQALMNRVVCRVRALVVLP 354

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
           +        +  +S      P +      +                         +    
Sbjct: 355 TRDLATQV-YKIISALCKATPLKPVLIGGTKKFAQEQSLLVREIDGELHSLADIVVATPG 413

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEA----SGTPDIINKSILGFFTEL---NPNRFWIMTS 228
              +      G +  H   +  DEA              +          N       TS
Sbjct: 414 RLVDNISQTAGFNLQHLRFLVIDEADRLMEHISQDWIAQVEKSAYTPLYDNGTTLPTFTS 473

Query: 229 NTRRLN 234
           N +R  
Sbjct: 474 NRQRPG 479


>gi|172087482|ref|XP_001913283.1| putative helicase [Oikopleura dioica]
 gi|42601411|gb|AAS21435.1| putative helicase [Oikopleura dioica]
          Length = 2017

 Score = 41.9 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 41/175 (23%), Gaps = 21/175 (12%)

Query: 45   LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            L  FS  +  Q +    +  H                + A  G GKT      ML +   
Sbjct: 1173 LYSFSHFNPIQTQVFHCLYHHDS-----------NALVGAPTGSGKTACAELSMLKVFRD 1221

Query: 105  RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
             P    + IA  +  +K  +      W            +              +Q   +
Sbjct: 1222 YPNGKCVYIAPLKALVKERM----DDW------SKKLGGKLGKKLVEMTGDIAPDQKAIV 1271

Query: 165  DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
             +     T   +           +      +  DE     +     +    T  N
Sbjct: 1272 SADIIITTPEKWDGISRSWQTRKYVRDVRLIVIDEIHMLGEDRGPVLESIVTRTN 1326


>gi|328785812|ref|XP_394691.4| PREDICTED: hypothetical protein LOC411217 [Apis mellifera]
          Length = 1084

 Score = 41.9 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 58/214 (27%), Gaps = 23/214 (10%)

Query: 23  ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82
           +       F M F    + G  +  F +P   QL+ +                  F   +
Sbjct: 19  KIQDDVTFFQMGFSQKILDGLSVCGFQRPSPIQLKAI------------PLGRCGFDLIM 66

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGM-SIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
            A  G GKT +   + L +I        ++ +A +          E++  ++ +      
Sbjct: 67  RAKSGTGKTLVFCIISLEMIDIDISSVQVLILAPT---------REIAVQIAQVFSSVGC 117

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
           E++ L +         +E      +                        +      DEA 
Sbjct: 118 EIKDLKVEVFIGGL-AIENDKKKVNNCQIAVGAPGRIRHLIDKGFLKVENVRLFVLDEAD 176

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
              +   +  + +     P    ++ S+      
Sbjct: 177 KLMETSFQKDINYIFSKLPLSKQVIASSATYPGD 210


>gi|260495554|ref|ZP_05815679.1| DNA/RNA helicase [Fusobacterium sp. 3_1_33]
 gi|260196896|gb|EEW94418.1| DNA/RNA helicase [Fusobacterium sp. 3_1_33]
          Length = 942

 Score = 41.9 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 65/194 (33%), Gaps = 35/194 (18%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P+  Q+E ++ ++     N         +  + +  G GKT L+A    + +       I
Sbjct: 210 PNSMQVEALKNLEETRKEND--------RALLISATGTGKTYLSA----FDVKQAKAKKI 257

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + +A+     K  L      +  +L ++                 E+ + +  I+ K   
Sbjct: 258 LFVAHR----KVILERSKISYQRILKNKKM---------------EIFDNNFQINGKDEV 298

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
           +     +  +          +   +  DE   +     +SI  +F    P     +T+  
Sbjct: 299 VFAMVQTLNKEKNLNIFPKEYFDYIIIDEVHHSGAKTYQSIFEYF---KPKFLLGITATP 355

Query: 231 RRLNGW-FYDIFNI 243
            R + +  Y +FN 
Sbjct: 356 ERTDDFNIYQLFNY 369


>gi|271961946|ref|YP_003336142.1| ATP-independent RNA helicase [Streptosporangium roseum DSM 43021]
 gi|270505121|gb|ACZ83399.1| ATP-independent RNA helicase [Streptosporangium roseum DSM 43021]
          Length = 561

 Score = 41.9 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 44/204 (21%), Gaps = 28/204 (13%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
            + +P   Q E +                        A  G GKT   A  +L  ++   
Sbjct: 29  GYEEPTPIQREAI------------PPLLEGRDLLGQAATGTGKTAAFALPVLQRMTRDG 76

Query: 107 GM---SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
           G      + +  +         A            H+       + P      +  Q   
Sbjct: 77  GGGEPMALVLVPTRELAVQVSEA----------FHHYGRELGARVLPIYGGQPIGRQLRA 126

Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFF--TELNP 220
           +      +                       V  DEA         + I      T  N 
Sbjct: 127 LQQGVDIVVATPGRALDHIGRGTLRLDDLEMVVLDEADEMLDMGFAEDIEAILQETPENR 186

Query: 221 NRFWIMTSNTRRLNGWFYDIFNIP 244
                  +   R+NG      N P
Sbjct: 187 QTVLFSATMPPRINGIARRHLNDP 210


>gi|227891006|ref|ZP_04008811.1| DNA/RNA helicase [Lactobacillus salivarius ATCC 11741]
 gi|227867415|gb|EEJ74836.1| DNA/RNA helicase [Lactobacillus salivarius ATCC 11741]
          Length = 986

 Score = 41.9 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 61/195 (31%), Gaps = 31/195 (15%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           +        +P++ Q E ++ +                K  I +  G GKT L A  +  
Sbjct: 210 EDNSNYSIIKPNKMQKEALKNL-------QKLRLLRETKGLIISATGTGKTYLAALDV-- 260

Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
                     + +A+ E  LK +L               + ++       +        +
Sbjct: 261 --KNYNPKRFLFVAHREQILKKSL-------------DSFHKVLGGDKKTNYGIISGNTK 305

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220
               D+K+   T +T S+   +            +  DEA      I   +L +FT   P
Sbjct: 306 --NTDAKYLFATVQTLSK--VENLNQFKRDEFDYILIDEAHHVGSKIYGKLLDYFT---P 358

Query: 221 NRFWIMTSNTRRLNG 235
           +    MT+   R + 
Sbjct: 359 DFLLGMTATPERSDD 373


>gi|166365110|ref|YP_001657383.1| hypothetical protein MAE_23690 [Microcystis aeruginosa NIES-843]
 gi|166087483|dbj|BAG02191.1| hypothetical protein MAE_23690 [Microcystis aeruginosa NIES-843]
          Length = 698

 Score = 41.9 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 46/148 (31%), Gaps = 15/148 (10%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSET---QLKNTL--WAEVSKWLSMLPHRHWF 141
           G GKT + A  + +L +T P  +I     + +   Q K+ +  ++   K       +   
Sbjct: 215 GSGKTIVLALKVAYLHATHPDWNIAVTFYTRSLKDQYKDLITRFSYEHKNSEPDWEKVKI 274

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF---------VGPHNTHG 192
                S    G Y EL ++              TYS E P  F            H  + 
Sbjct: 275 IHAWGSPKIEGIYYELCKRHNIEYLGFSQADNLTYSHEEPFDFACQKAFREIKKFH-QYY 333

Query: 193 MAVFNDEASGTPDIINKSILGFFTELNP 220
             +  DEA   P    +       +   
Sbjct: 334 DLILIDEAQDFPQDFLRLCYEILKDDKR 361


>gi|119493757|ref|ZP_01624327.1| hypothetical protein L8106_27229 [Lyngbya sp. PCC 8106]
 gi|119452502|gb|EAW33688.1| hypothetical protein L8106_27229 [Lyngbya sp. PCC 8106]
          Length = 723

 Score = 41.9 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/261 (11%), Positives = 58/261 (22%), Gaps = 42/261 (16%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q    + V    +  ++       +  + +  G GKT     M+   +++R    ++
Sbjct: 31  RPYQQTIKDEVYNQLNQGIH-------RILVYSPTGSGKTATFCSMIADFLASR--HRVL 81

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            + +                         F ++        +        +         
Sbjct: 82  LLMH-----------------------REFLIEQTVKTLRRFGVPTEAIGIIKAGYSENR 118

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
                           H  +   V  DEA         S          N   I  + + 
Sbjct: 119 DRPLQLAGIQSLSRRQHPQNIDIVIGDEAHTI---CWYSEYKKLLNSLNNSIQIGFTASP 175

Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGII---SRYGLDSDVARIEILGQF 288
                    F    E +          E +  GF   +        +D      +  G F
Sbjct: 176 WRLKPHKQYFG---EWFDTIVKGPTIQELMSLGFLARVRYFGKGGLVDLTQLDTDSTGDF 232

Query: 289 PQ-QEVNNFIPHNYIEEAMSR 308
              Q    F+     E    R
Sbjct: 233 KTLQMEQKFLDAGICEAVRQR 253


>gi|291455770|ref|ZP_06595160.1| DNA repair helicase Rad25 [Bifidobacterium breve DSM 20213]
 gi|291382698|gb|EFE90216.1| DNA repair helicase Rad25 [Bifidobacterium breve DSM 20213]
          Length = 1068

 Score = 41.9 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 64/221 (28%), Gaps = 35/221 (15%)

Query: 16  HEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFS-QPHRWQLEFMEAVDVHCHSNVNNSN 74
                  +    FK       P     + LE    QP+  Q E +  +        +   
Sbjct: 221 LTEEWIKQYEEDFK---KYAPPRHEILQSLEGHDIQPNAMQQEALANLKKIREQGEH--- 274

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
               +  I +  G GKT L+A    + +       ++ IA    Q +  L   +  +  +
Sbjct: 275 ----RAIIVSATGTGKTHLSA----FDVRECQPKRMLYIA----QQQMILQTAMKSYQKV 322

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
           L                         S   D ++   T +T    +P+      +     
Sbjct: 323 LGCD------------ESELGLYSGTSKQQDRRYVFATVQTMR--QPEVLAQFKSDEFDY 368

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
           V  DE         + ++  F + +      MT+   R +G
Sbjct: 369 VLVDEVHHAGAEGYQRVINHFKDAD--FMLGMTATPERTDG 407


>gi|190892203|ref|YP_001978745.1| hypothetical protein RHECIAT_CH0002615 [Rhizobium etli CIAT 652]
 gi|190697482|gb|ACE91567.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
          Length = 930

 Score = 41.9 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/211 (9%), Positives = 51/211 (24%), Gaps = 32/211 (15%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q + ++ +      +  +         ++A  G GKT L   +M      R G + +
Sbjct: 11  RAYQQKILDNLANLIGDDSLH--------IVAAP-GSGKTILGLEVM-----RRLGEATL 56

Query: 112 CIANS------ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
            +A S        Q    ++   +               ++++                +
Sbjct: 57  ILAPSKTIRDQWAQRLRAMFLPANNAEPDWISHDVRAPSTITIITYQALHAAFSGHTSEE 116

Query: 166 SKHYTITCRTYSEERPDTFVG------------PHNTHGMAVFNDEASGTPDIINKSILG 213
               +    +      +                  + +   +  DEA    +   K++  
Sbjct: 117 EIIDSEEEHSDGARSVEASKQQAEKARKKIIAKLRDENVRTLVLDEAHHLRNEWWKALTM 176

Query: 214 FFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244
               L       +T+                
Sbjct: 177 LKQALGKPTVVALTATPPYDVDPQEWDRYQA 207


>gi|188581754|ref|YP_001925199.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
 gi|179345252|gb|ACB80664.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
          Length = 506

 Score = 41.9 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 34/305 (11%), Positives = 70/305 (22%), Gaps = 42/305 (13%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST------RPGMS 109
            E          +               A  G GKT   A  +L  +S       R G  
Sbjct: 18  EEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILHRLSLENRRAPRRGCR 77

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           ++ ++ +            S +   LP        +  +        +  Q   I     
Sbjct: 78  VLVLSPTRELASQIA-ESFSDYGRHLP------YTNTVVF---GGVNINRQERAIAPGVD 127

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG---FFTELNPNRFWIM 226
            +                       +  DEA    D+     L              +  
Sbjct: 128 ILVATPGRLIDLVDRRALTLDGVEILVLDEADQMLDLGFIHALKRIVKMLPARRQSLFFS 187

Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFH-------EGIISRYGLDSDV 279
            +  + + G        P++          T E +D           + +++    D  +
Sbjct: 188 ATMPKNIAGLADQYLTNPVQ--VAVTPVATTAERVDQQVIFCHTGAKQALLNHVLRDPKI 245

Query: 280 ARIEILGQFPQQEVNNFIPHN---YIEEAMSREAIDDLYA-----------PLIMGCDIA 325
            R+ +  +            +    +  A+                      +++  DIA
Sbjct: 246 ERVLVFTRTKHGADRVVRGLDKAGIVGAAIHGNKSQPQRERALAAFRDGSCRVLVATDIA 305

Query: 326 GEGGD 330
             G D
Sbjct: 306 ARGID 310


>gi|304389926|ref|ZP_07371883.1| superfamily II DNA or RNA helicase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304326819|gb|EFL94060.1| superfamily II DNA or RNA helicase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 931

 Score = 41.9 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 32/316 (10%), Positives = 71/316 (22%), Gaps = 42/316 (13%)

Query: 39  GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98
           G    P+E       W       +  H                     G GK+ +    +
Sbjct: 15  GALTDPVEVLLAFQEWAESTGRPLYPHQQEAAERLILEDKHLIAPTPTGSGKSLIGVAAI 74

Query: 99  LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
           LW ++   G      A  +  +    +  V            F   ++ +          
Sbjct: 75  LWSLAR--GGVSYYTAPLKALVSEKFFDLV----------DLFGAANVGMVTGDGSVNAD 122

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG--TPDIINKSILGFFT 216
              +   ++        + ++           +   V  DE      P+          T
Sbjct: 123 APIICATAEILANQALRWGDDL----------NVDTVVMDEFHYYADPERGWAWQAPLLT 172

Query: 217 ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLD 276
                  +++ S T     WF                  +    ++  +    + +    
Sbjct: 173 L--TKTRFVLMSATLGDTSWFAKNLREVTGREVAVLDSAKRPVPLEMSYAAEPLEKILQG 230

Query: 277 SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
                         +     +  +  + A   EA       L +G D      D    + 
Sbjct: 231 LA---------NQDRLPAYVVHPS--QRAAVEEAERIASLDLRLGLD-----SDTAARLK 274

Query: 337 RRGNIIEHIFDWSAKL 352
            + N +     +   L
Sbjct: 275 DQVNTVRFHSSFGKTL 290


>gi|256847916|ref|ZP_05553361.1| type III restriction protein [Lactobacillus coleohominis 101-4-CHN]
 gi|256715605|gb|EEU30581.1| type III restriction protein [Lactobacillus coleohominis 101-4-CHN]
          Length = 683

 Score = 41.9 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/190 (12%), Positives = 49/190 (25%), Gaps = 22/190 (11%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
              Q + + A+  H                I A  G GKT +   ++      +     +
Sbjct: 422 RPKQKQAIMAIKEHDLGM------------ICAQTGFGKTVIGCALI-----AKRQARTL 464

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            I  +E   K   W +       +    + E             E++  +    S    I
Sbjct: 465 VIVPTENIAKQ--WQQTGLKFLNIHDNPFEETTKTGRLVRKKKVEIISGNRNRPSHLVDI 522

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
                     D        +   +  DE      +  + +     + N      +T+   
Sbjct: 523 VNYRKLTRMSDDDRKDFYQNYSQIIIDECHHISAVTFEKV---LVQANVKYIVGLTATPE 579

Query: 232 RLNGWFYDIF 241
           R +G    + 
Sbjct: 580 RKDGLEQFMH 589


>gi|198425548|ref|XP_002130172.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 51
           [Ciona intestinalis]
          Length = 636

 Score = 41.9 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/155 (11%), Positives = 40/155 (25%), Gaps = 2/155 (1%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIIC 112
           Q + +  +      ++++         +SA  G GKT   A  ++  +  R  P    + 
Sbjct: 201 QQKVIPYILRDAQRSISHQLFPPRDLCVSAPTGSGKTIAFALPIVQALLQRVVPATRALV 260

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           ++ +           VS   +             SL           ++         + 
Sbjct: 261 VSPTRELSAQIYKVFVSLCRNTQLKCILITAAKGSLLQEQRALLNFGKTGLACPADIVVA 320

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207
                 +               +  DEA    + I
Sbjct: 321 TPGRLADHLSQTSAFSLDKLRFLVIDEADRMMEQI 355


>gi|302838949|ref|XP_002951032.1| hypothetical protein VOLCADRAFT_117719 [Volvox carteri f.
           nagariensis]
 gi|300263727|gb|EFJ47926.1| hypothetical protein VOLCADRAFT_117719 [Volvox carteri f.
           nagariensis]
          Length = 480

 Score = 41.9 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 45/157 (28%), Gaps = 8/157 (5%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              +    G+GKT + A +ML      P   I+ +A ++  ++  + A   +    +P  
Sbjct: 172 NTLVCLPTGLGKTLVAAVVMLNYYRWFPDGKIVFVAPTKPLVEQQMKACKEQTC--IPKA 229

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
              ++ +         A           + +  T +    +  +          + +  D
Sbjct: 230 DIVQLTATRGPGGEGRAAEWS-----QRRVFFCTPQILENDIANGTCPKEKYVLVLLVVD 284

Query: 199 EAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
           E           + L            +  S T   +
Sbjct: 285 ECHRALGKAAPVTALQTLRSEQLRFRVVGLSATPGSS 321


>gi|261494476|ref|ZP_05990962.1| putative helicase [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261309860|gb|EEY11077.1| putative helicase [Mannheimia haemolytica serotype A2 str. OVINE]
          Length = 762

 Score = 41.9 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 49/179 (27%), Gaps = 14/179 (7%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           +++   G GKT  +    L          II +    + ++    AE  K    L     
Sbjct: 264 SLTVPTGGGKTFTSMAFALEHAKQYGLCRIIYVIPFTSIIEQNA-AEFRKAFGELGEEAV 322

Query: 141 FEMQSLSLHPSGW-YAELLEQSMGIDSKHYTITCRTYS-------EERPDTFVGPHNTHG 192
            E  S   H S    +   +  +  ++    +   T          +R       HN  G
Sbjct: 323 LEHHSTFDHDSLPDKSSRDKLKLASENWDAPVVVTTAVQFFESLFADRSSRCRKLHNIAG 382

Query: 193 MAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTR-RLNGWFYDIFNIPLE 246
             +  DEA   P      I  +I         +      +         FY  F    E
Sbjct: 383 SVIILDEAQMLPLNLLRPIMAAIDELARNYQCSVVLCTATQPAIHQANGFYKGFENVRE 441


>gi|258507444|ref|YP_003170195.1| UvrD/REP helicase [Lactobacillus rhamnosus GG]
 gi|257147371|emb|CAR86344.1| UvrD/REP helicase [Lactobacillus rhamnosus GG]
 gi|259648798|dbj|BAI40960.1| hypothetical protein [Lactobacillus rhamnosus GG]
          Length = 595

 Score = 41.9 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIIC 112
           Q+E +     H  +        I +  + AG G GKTT+ A  +L L++TR      I C
Sbjct: 5   QIESILLHGAHFTAEQREVIQAIGRIDVVAGPGSGKTTVLAAKVLRLLTTRNYEDKGICC 64

Query: 113 IANSETQLKNTLWAE 127
           I ++   +K  L   
Sbjct: 65  ITHTNVAVKEILARL 79


>gi|238786939|ref|ZP_04630739.1| Terminase, ATPase subunit [Yersinia frederiksenii ATCC 33641]
 gi|238724727|gb|EEQ16367.1| Terminase, ATPase subunit [Yersinia frederiksenii ATCC 33641]
          Length = 587

 Score = 41.9 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 34/328 (10%), Positives = 71/328 (21%), Gaps = 40/328 (12%)

Query: 60  EAVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           E++  +  +         F+   +   R IG T   +W  L       G + + ++ S+ 
Sbjct: 142 ESMFGYQRNWYEAGLSPDFRIRNLLKSRQIGATYFFSWEALLDALDT-GRNQMFVSASKA 200

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH-------YTI 171
           Q        +      +      E+  L       +      +      +       +  
Sbjct: 201 QAHQ-FKNYIVAAARQVDVDLRGEVIILPNGAEMHFLGTNASTAQGRPGNLYLDEYFWIP 259

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP---NRFWIMTS 228
             +                     +    S T         G           R  I  S
Sbjct: 260 GFQKLRRAASGMASQKRYRST---YFSTPSSTSHEAYPFWAGTLFNKGKAKDKRIEIDVS 316

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
             R   G   +      + +++       ++G    F    +     D D      +  F
Sbjct: 317 YPRLAAGRLCED-----KQYRQIVTIEDALKGGCDLFDIDELRNENSDED-FENLFMCGF 370

Query: 289 PQQEVNNFIPHNYIEEAMSREAIDD----------LYAPLIMGCDIAGEGGDKTVVVFRR 338
                + F         +                    P+ +G D A  G D        
Sbjct: 371 IDDNASTFKLAEMQRCMVDSWEKWSDVKLLALRPFGDRPVWIGYDPASTG-DSAGCAVIA 429

Query: 339 GNI-------IEHIFDWSAKLIQETNQE 359
             +       +     W      +    
Sbjct: 430 PPVVAGGKFRVLERHQWKGMDFADQASN 457


>gi|296412400|ref|XP_002835912.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629709|emb|CAZ80069.1| unnamed protein product [Tuber melanosporum]
          Length = 1952

 Score = 41.9 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 30/126 (23%), Gaps = 16/126 (12%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML--- 135
               + +  G GKT      M W     PG  ++ IA  +  ++      V  W + L   
Sbjct: 1131 NVLLGSPTGSGKTIACELAMWWAFRENPGSKVVYIAPMKALVRER----VKDWNARLTAP 1186

Query: 136  PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
                  E+   +   +    +        +                             V
Sbjct: 1187 MSLKLVELTGDNTPDTRTIHDADIIITTPEKWDGISRSWQTRNYV---------RQVSLV 1237

Query: 196  FNDEAS 201
              DE  
Sbjct: 1238 IIDEIH 1243


>gi|290975853|ref|XP_002670656.1| predicted protein [Naegleria gruberi]
 gi|284084217|gb|EFC37912.1| predicted protein [Naegleria gruberi]
          Length = 919

 Score = 41.9 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 43/154 (27%), Gaps = 12/154 (7%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH------RHW 140
           G GKT + +  +L ++   P   I+  A S       +   V   L+ L           
Sbjct: 478 GTGKTFVVSQCILEIMKQDPNHKILICAPSNQAADIIVERLVDSNLNPLVKMMRMNSVQR 537

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN---THGMAVFN 197
                       +  +L +     +           S      ++        H   +  
Sbjct: 538 DPNTFTKRWIIKFSNKLDQGFEIPELHEIAKYDVIISTCTSSGYLYSKGVKPGHFSHIII 597

Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
           DE+    + +    L  F+    N   ++  + +
Sbjct: 598 DESG---ESVIPEALIPFSLKGDNTVVVLAGDPK 628


>gi|225559758|gb|EEH08040.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
          Length = 1612

 Score = 41.9 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 36/121 (29%), Gaps = 9/121 (7%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKTT  A ++        G S++  + + T + N L       +  L      ++   
Sbjct: 1165 GTGKTTTIAHII--RALASQGKSVLLTSYTHTAVDNILLKIKDDNIRTLRLGATTKIHPD 1222

Query: 147  SLH---PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
                   +    E +E+   I      +         P      ++        DEAS  
Sbjct: 1223 VRKFADLAATPKETIEELKDIYENSRIVATTCLGINHP----IFNSRMFDFCIVDEASQI 1278

Query: 204  P 204
             
Sbjct: 1279 T 1279


>gi|28900445|ref|NP_800100.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260362335|ref|ZP_05775298.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|260877397|ref|ZP_05889752.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|260898434|ref|ZP_05906930.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|28808756|dbj|BAC61933.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308085113|gb|EFO34808.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308090744|gb|EFO40439.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|308111119|gb|EFO48659.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|328470398|gb|EGF41309.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus 10329]
          Length = 430

 Score = 41.9 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/272 (9%), Positives = 74/272 (27%), Gaps = 38/272 (13%)

Query: 87  GIGKTTLNAWMMLWLIST------RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           G GKT   +  M+  +        R     + +A +          E+++ ++    + +
Sbjct: 48  GTGKTAAFSLPMIQQLLDSGRTASRKTARALILAPT---------RELAEQIADNI-KAY 97

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
            +   LS+       ++  Q   +++    +       E           +   +  DEA
Sbjct: 98  TKYTDLSVVAVFGGRKMSSQVSALENGVDILVATPGRLEEHIEQGNVSVANLEFLVFDEA 157

Query: 201 SGTPDIIN--KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
               D+                 +  + ++ T               +  +  + +T   
Sbjct: 158 DRILDMGFIHAVRKIMLDVDTDPQIMMFSATTSSQLNLLAKDILRKPKRIEVERANTTAH 217

Query: 259 EG------IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY----------- 301
                   +D      ++S      +  ++ +   + +   +                  
Sbjct: 218 TVAHVLYPVDQERKTELLSELIGRKNWQQVLVFVNYKETANDVVKELKLDGIKAVVCHGD 277

Query: 302 -IEEAMSREAIDDLYA--PLIMGCDIAGEGGD 330
             + A  R   +       +++  D+A  G D
Sbjct: 278 RAQSARRRALEEFKTGKVRVMVATDVAARGLD 309


>gi|255307197|ref|ZP_05351368.1| ATP-dependent RNA helicase [Clostridium difficile ATCC 43255]
          Length = 497

 Score = 41.9 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/235 (8%), Positives = 56/235 (23%), Gaps = 13/235 (5%)

Query: 60  EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-SIICIANSET 118
             +       V           + +  G GKT   A  +   I+        + +  +  
Sbjct: 23  YNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTASFAIPLCENINVDYNNIQALIVVPTRE 82

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
                   E+S    +   R        S+               +  + + +       
Sbjct: 83  LALQV-KDEISDIGRLKKVRCSAIFGKQSIKDQIA---------ELKQRVHIVVATPGRI 132

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNT-RRLNGW 236
                       +   +  DEA         + +      L   +   + S T      +
Sbjct: 133 LDHINRGSIKLENVKYLVIDEADKMFNKGFVEQMEKILLNLPKEKIVSLFSATIDEEIKY 192

Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
             + + +        + ++ T +       + I +       + +  I  + P+ 
Sbjct: 193 ICEKYMLDYSVINIEENESDTNQKTRQIDDKIIKANGREKYILLKELIYSENPKS 247


>gi|255101321|ref|ZP_05330298.1| ATP-dependent RNA helicase [Clostridium difficile QCD-63q42]
          Length = 497

 Score = 41.9 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/235 (8%), Positives = 56/235 (23%), Gaps = 13/235 (5%)

Query: 60  EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-SIICIANSET 118
             +       V           + +  G GKT   A  +   I+        + +  +  
Sbjct: 23  YNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTASFAIPLCENINVDYNNIQALIVVPTRE 82

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
                   E+S    +   R        S+               +  + + +       
Sbjct: 83  LALQV-KDEISDIGRLKKVRCSAIFGKQSIKDQIA---------ELKQRVHIVVATPGRI 132

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNT-RRLNGW 236
                       +   +  DEA         + +      L   +   + S T      +
Sbjct: 133 LDHINRGSIKLENVKYLVIDEADKMFNKGFVEQMEKILLNLPKEKIVSLFSATIDEEIKY 192

Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
             + + +        + ++ T +       + I +       + +  I  + P+ 
Sbjct: 193 ICEKYMLDYSVINIEENESDTNQKTRQIDDKIIKANGREKYILLKELIYSENPKS 247


>gi|126699799|ref|YP_001088696.1| ATP-dependent RNA helicase [Clostridium difficile 630]
 gi|115251236|emb|CAJ69067.1| ATP-dependent RNA helicase [Clostridium difficile]
          Length = 497

 Score = 41.9 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/235 (8%), Positives = 56/235 (23%), Gaps = 13/235 (5%)

Query: 60  EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-SIICIANSET 118
             +       V           + +  G GKT   A  +   I+        + +  +  
Sbjct: 23  YNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTASFAIPLCENINVDYNNIQALIVVPTRE 82

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
                   E+S    +   R        S+               +  + + +       
Sbjct: 83  LALQV-KDEISDIGRLKKVRCSAIFGKQSIKDQIA---------ELKQRVHIVVATPGRI 132

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNT-RRLNGW 236
                       +   +  DEA         + +      L   +   + S T      +
Sbjct: 133 LDHINRGSIKLENVKYLVIDEADKMFNKGFVEQMEKILLNLPKEKIVSLFSATIDEEIKY 192

Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
             + + +        + ++ T +       + I +       + +  I  + P+ 
Sbjct: 193 ICEKYMLDYSVINIEENESDTNQKTRQIDDKIIKANGREKYILLKELIYSENPKS 247


>gi|322799954|gb|EFZ21080.1| hypothetical protein SINV_07642 [Solenopsis invicta]
          Length = 1251

 Score = 41.9 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 68/237 (28%), Gaps = 29/237 (12%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPL-EHFSQPHRWQLEFM 59
           M + I+ D   +Q  +++ +          F     P  I    +   F++P   QL+ +
Sbjct: 1   MAQYIAHDINKKQRTNDIKIEENV-----TFDQMRLPQEILDGLMSAGFNKPSPIQLKAI 55

Query: 60  EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI-STRPGMSIICIANSET 118
                             F   + A  G GKT + + + L  +  +     ++ +A +  
Sbjct: 56  ------------PLGRCGFDLIVRAKSGTGKTLVFSVIALETLNISIQLPQVLIVAPTRE 103

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
                 +  V K +         E     +         +E+     +K +         
Sbjct: 104 IAIQITY--VIKAIGSQIEGLGIEYFVGGI--------SIEEDKKKLNKCHVAIGAPGRI 153

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
                      +       DEA    +I  +  + F     P+   ++ S+      
Sbjct: 154 RHLIEKGFLQVSKVRLFVLDEADKLLEISFQKDINFIFSKLPSSKQVIASSATYPGD 210


>gi|291568725|dbj|BAI90997.1| putative helicase [Arthrospira platensis NIES-39]
          Length = 1044

 Score = 41.9 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 44/148 (29%), Gaps = 15/148 (10%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           QL+ +  V      +   ++            G+GKT     ++ +L+ +     ++ +A
Sbjct: 299 QLKILRRVAETFPRSFLIADEV----------GLGKTVETGAILRYLLVSGRVKRVLVLA 348

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            +  Q +   W E  +         W   Q     P G  + + E     +     +   
Sbjct: 349 PASVQSQ---WHEELR--EKFNLHFWSYGQKEFKDPYGAVSTVREAENPWNRHPLIVASS 403

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASG 202
                R  +           V  DEA  
Sbjct: 404 HLVRRRERSQELLAAEPWDLVVLDEAHH 431


>gi|260174972|ref|ZP_05761384.1| hypothetical protein BacD2_24155 [Bacteroides sp. D2]
          Length = 481

 Score = 41.9 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 31/280 (11%), Positives = 76/280 (27%), Gaps = 12/280 (4%)

Query: 58  FMEAVDVHCHSNVNNSNPTI-FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
           F++ V         + + +I ++ A+S     GK+ +++  + W+    P  S++     
Sbjct: 47  FLKKVAEAFMRVYESYSASIIYRLAVSMPPRAGKSYISSLFIAWMYGHFPEESVM----- 101

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
                +TL+ ++S     +     F+     +H  G    +   S+    +         
Sbjct: 102 RNCCSDTLYNKLSYDTRDVVKSRRFKEIFPDIHLKGDKQNVKSWSVEGARQVSYFGGGVG 161

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP---NRFWIMTSNTRRL 233
                        T  +    ++A    +          T  +    +   I        
Sbjct: 162 GTVIGFGASMLAMTDDLYKSLEDALSDNNNEKVWSWKQGTHDSRIEGSCCMIDIGTRWSS 221

Query: 234 NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF---PQ 290
           N     +      +           +               L S+      + ++   P 
Sbjct: 222 NDVLGRMEEAGKYNEIIRIAALDENDETFCADVHTTEYYKELRSETDESIWMAEYMQEPF 281

Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGD 330
           +      P + +      +         +  CD A +G D
Sbjct: 282 EAKGLLFPKSSLMRFKLADIAGKKPDGTLGACDTADKGDD 321


>gi|158520755|ref|YP_001528625.1| hypothetical protein Dole_0738 [Desulfococcus oleovorans Hxd3]
 gi|158509581|gb|ABW66548.1| conserved hypothetical protein [Desulfococcus oleovorans Hxd3]
          Length = 631

 Score = 41.9 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 61/228 (26%), Gaps = 27/228 (11%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q E +  +D + ++ V +   T ++  I    G GK+ + A   + L     G  ++ + 
Sbjct: 217 QREPL-DMDKNQNNLVTSRTDTGYRR-IKGPAGSGKSLVLAARAVELA--NEGKDVLVVN 272

Query: 115 NSETQ---LKN--------------TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
            + T    L++                W     W   +  +  F+ +  +L      AE 
Sbjct: 273 YTITLPHYLRDLAARCHRNGEGRGSITWLNFHAWCKRVCIQAGFKKEYDNLFAEIRSAER 332

Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA--VFNDEASGTPDIINKSILGFF 215
            E     +     +  R              +   +   V  DEA          +    
Sbjct: 333 REPDKKNNGLKEIMDHRIPDLVDRIISRNLGHPDTIYDAVLLDEAQDFQLKWWNLLRKVC 392

Query: 216 TELNPNRFWI----MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
            +                T R+             DW R     R   
Sbjct: 393 RQGGEKLLVADATQDIYGTARVWTEEAMHGAGFRGDWVRLATSYRLPP 440


>gi|315923207|ref|ZP_07919447.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313697082|gb|EFS33917.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 471

 Score = 41.9 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 31/280 (11%), Positives = 76/280 (27%), Gaps = 12/280 (4%)

Query: 58  FMEAVDVHCHSNVNNSNPTI-FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
           F++ V         + + +I ++ A+S     GK+ +++  + W+    P  S++     
Sbjct: 37  FLKKVAEAFMRVYESYSASIIYRLAVSMPPRAGKSYISSLFIAWMYGHFPEESVM----- 91

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
                +TL+ ++S     +     F+     +H  G    +   S+    +         
Sbjct: 92  RNCCSDTLYNKLSYDTRDVVKSRRFKEIFPDIHLKGDKQNVKSWSVEGARQVSYFGGGVG 151

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP---NRFWIMTSNTRRL 233
                        T  +    ++A    +          T  +    +   I        
Sbjct: 152 GTVIGFGASMLAMTDDLYKSLEDALSDNNNEKVWSWKQGTHDSRIEGSCCMIDIGTRWSS 211

Query: 234 NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF---PQ 290
           N     +      +           +               L S+      + ++   P 
Sbjct: 212 NDVLGRMEEAGKYNEIIRIAALDENDETFCADVHTTEYYKELRSETDESIWMAEYMQEPF 271

Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGD 330
           +      P + +      +         +  CD A +G D
Sbjct: 272 EAKGLLFPKSSLMRFKLADIAGKKPDGTLGACDTADKGDD 311


>gi|189425674|ref|YP_001952851.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ]
 gi|189421933|gb|ACD96331.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
          Length = 439

 Score = 41.9 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 49/172 (28%), Gaps = 26/172 (15%)

Query: 35  FFPWGIKGKPLEHFSQPHRWQLEFMEAV-DVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93
           F P  + G     ++ P   Q + +  +   H                  A  G GKT  
Sbjct: 8   FHPKVVAGINALGYTTPTPIQAQAIPKIMAGHDLMG-------------LAQTGTGKTAA 54

Query: 94  NAWMMLWLISTRPGMSI--ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151
            A  +L  +   P   +  + IA +    +           +ML       ++S++++  
Sbjct: 55  FALPILHRLMQGPRKQVRALVIAPTRELAEQI-------NDAMLELGQQTRLKSITVY-- 105

Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
                +  Q   + +    +                  T+   +  DEA   
Sbjct: 106 -GGVNVNPQIEKLKNGVEIVVACPGRLLDHINQGTIDLTNLELLVLDEADQM 156


>gi|255066890|ref|ZP_05318745.1| CRISPR-associated helicase Cas3 domain protein [Neisseria sicca
           ATCC 29256]
 gi|255048965|gb|EET44429.1| CRISPR-associated helicase Cas3 domain protein [Neisseria sicca
           ATCC 29256]
          Length = 760

 Score = 41.9 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 46/175 (26%), Gaps = 14/175 (8%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
             G GKT  +    L          +I +    + ++    AE  K    L  +   E  
Sbjct: 266 PTGGGKTFTSMAFALEHAKRYDMRRVIYVIPFTSIIEQNA-AEFRKAFGELGEQAVLEHH 324

Query: 145 SLSLHPS-GWYAELLEQSMGIDSKHYTITCRTYS-------EERPDTFVGPHNTHGMAVF 196
           S          A   +  +  ++    I   T          +R       HN  G  + 
Sbjct: 325 STFDDGKLQNEATKDKLRLASENWDAPIVVTTAVQFFESLFADRSSRCRKLHNIAGSVII 384

Query: 197 NDEASGTPDI----INKSILGFFTELNPNRFWIMTSNTR-RLNGWFYDIFNIPLE 246
            DEA   P      I + I         +      +    +    FY  F    E
Sbjct: 385 LDEAQMLPLNLLLPIMQVIKELAQNYRCSVVMCTATQPAVQAENGFYRGFENVRE 439


>gi|1294759|gb|AAB41467.1| terminase [Lactococcus phage phi41]
          Length = 423

 Score = 41.9 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 26/208 (12%), Positives = 59/208 (28%), Gaps = 20/208 (9%)

Query: 85  GRGIGKTTLNA-WMMLWLIS-TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
           GRG GK++L A  ++ W+I   + G   + IA   TQ ++                    
Sbjct: 101 GRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVF---------------DQV 145

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
                   +       +            + +T  +++ +  +     +      DE   
Sbjct: 146 RNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDEVHT 205

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
             + I +S+            W     T         +++  +E +K  +          
Sbjct: 206 YGEDITESVNKG--SRQKQDNWQSIYITSGGLKR-DGLYDKLVERFKSEEEFYNDRSFGL 262

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQ 290
               E         +    + ++G  P+
Sbjct: 263 LYMLEDKEQVKNKKNWTMALPLIGDVPK 290


>gi|46133873|ref|XP_389252.1| hypothetical protein FG09076.1 [Gibberella zeae PH-1]
          Length = 1721

 Score = 41.9 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/136 (12%), Positives = 33/136 (24%), Gaps = 18/136 (13%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT     M+  L        ++  A +   + N +   + +     P     +   L
Sbjct: 1305 GTGKTETIVEMICALQIANEKARVLVTAPTHNAVDNVMRRYIKQIQEQ-PLARKVQPNVL 1363

Query: 147  SLHPSGWYAELLEQ----------SMGIDSKHYTITCRTYSEERP-------DTFVGPHN 189
             +           +           +  D K      +   +                 +
Sbjct: 1364 RVSTEVHKVSDDLRKYTCDAMAGQEIHGDYKAMKKATQMIKDSDTVFTTCIGAGIGLLRS 1423

Query: 190  THGMAVFNDEASGTPD 205
                 V  DEAS   +
Sbjct: 1424 EFFDIVIVDEASQQTE 1439


>gi|293401139|ref|ZP_06645283.1| SNF2 domain protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305265|gb|EFE46510.1| SNF2 domain protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 447

 Score = 41.9 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 70/240 (29%), Gaps = 34/240 (14%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN-AWMMLWLISTRPGMS 109
           PH +Q   ++ ++ H  + V                G+GKT +    +   L  +     
Sbjct: 5   PHNYQSYAIDYIETHPVAAVLLDM------------GLGKTVIFLTAIADLLFDSFEAHR 52

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I+ +A      ++T  AE+SKW  +    +   + ++    +   A      +  ++  +
Sbjct: 53  ILVVAP-LRVARDTWPAEISKWQHLKHLTYAVAVGTVKERKAALSAGADITIINRENLGW 111

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
            I    Y                  V  DE S   +  +K            +  I  + 
Sbjct: 112 LIDSSGYE------------FDYDMVIIDELSSFKNHKSKRFQSLMKVRPKVKRIIGLTG 159

Query: 230 TRRLNGWFYDIFNIPLEDW--------KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR 281
           T   NG         L D+          Y+ +    +  +             +  + R
Sbjct: 160 TPSSNGLMDLWAEFKLLDFGERLGRFITHYRNNYFIPDKRNGEIIYSYKPMPYAEDAIYR 219


>gi|194216574|ref|XP_001490317.2| PREDICTED: similar to Eukaryotic initiation factor 4A-III
           (Eukaryotic translation initiation factor 4A isoform 3)
           (ATP-dependent RNA helicase eIF4A-3) (ATP-dependent RNA
           helicase DDX48) (DEAD box protein 48) (Eukaryotic
           initiation factor 4A-like NUK-34) (Nucl [Equus caballus]
          Length = 375

 Score = 41.9 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 27/274 (9%), Positives = 65/274 (23%), Gaps = 34/274 (12%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR--------GIGKTTLNAWMMLWLI-STR 105
           + + +  +  +     +       K  I  GR        G GKT   +  +L  +    
Sbjct: 46  REDLLRGIYAYGFEKPSAIQQRAIKQIIK-GRDVIAQSQSGTGKTATFSISVLQCLDIQV 104

Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
                + +A +          E++  +         +  ++  H       + E    +D
Sbjct: 105 RETQALILAPT---------RELAVQIQK-GLLALGDYMNVQCHACIGGTNVGEDIRKLD 154

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS-----GTPDIINKSILGFFTELNP 220
              + +                       +  DEA      G  + I             
Sbjct: 155 YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL--PPAT 212

Query: 221 NRFWIMTSNTRRLNGWFYDIFNIP----LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLD 276
               I  +    +          P    ++ +         V+ +     E   +   + 
Sbjct: 213 QVVLISATLPHEILEMTNKFMTDPIRILVKRFYYIHPLFDPVDWLTEKMREANFTVSSMH 272

Query: 277 SDVARIEILG---QFPQQEVNNFIPHNYIEEAMS 307
            D+ + E      +F        I  +     + 
Sbjct: 273 GDMPQKERESIMKEFRSGASRVLISTDVWARGLD 306


>gi|164687290|ref|ZP_02211318.1| hypothetical protein CLOBAR_00931 [Clostridium bartlettii DSM
           16795]
 gi|164603714|gb|EDQ97179.1| hypothetical protein CLOBAR_00931 [Clostridium bartlettii DSM
           16795]
          Length = 480

 Score = 41.9 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/199 (10%), Positives = 49/199 (24%), Gaps = 12/199 (6%)

Query: 60  EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-SIICIANSET 118
             +     S V           + +  G GK+   A  +   I        ++ I  +  
Sbjct: 22  YKIPSQVQSRVIPVLLDKKDILVKSKTGTGKSAAFAIPICNKIKKLENKLKVLVIVPTRE 81

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
                   E+ K   +   +    +    L             + +      I       
Sbjct: 82  LALQV-KEEIEKIGRLKMIKCSVILGKEPLKNQI---------LELKQGTNVIVATPGRM 131

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
               +              DE         ++ +    +  PN       +   ++    
Sbjct: 132 IDHISRGSVDLDDLDYFIIDEVDKMFTKGFETDINTIMKNIPNTSCKAFFSAT-VDNDLK 190

Query: 239 DIFNIPLEDWKRYQIDTRT 257
           +I N  ++D++  ++D   
Sbjct: 191 EICNGYMKDYEYIEVDEEE 209


>gi|120600080|ref|YP_964654.1| ATP-dependent RNA helicase SrmB [Shewanella sp. W3-18-1]
 gi|146291991|ref|YP_001182415.1| ATP-dependent RNA helicase SrmB [Shewanella putrefaciens CN-32]
 gi|120560173|gb|ABM26100.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
 gi|145563681|gb|ABP74616.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 419

 Score = 41.9 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 48/233 (20%), Gaps = 22/233 (9%)

Query: 57  EFMEAVDVH----CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM---- 108
           E ++A+  H                      A  G GKT       L  +   P      
Sbjct: 14  ESLKAMGHHSPTTIQQETIPYALEQRDILARAPTGTGKTASFLLPALQHLIDFPRRFSGQ 73

Query: 109 -SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
             I+ +  +          E++  +      H    Q L +           Q   +   
Sbjct: 74  ARILILTPT---------RELASQIHRYAC-HLATDQGLDIAIITGGVPYAPQEEALAGN 123

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
              +                       +  DEA    D+   S++         R   M 
Sbjct: 124 VDILVATPGRLMEYLDKGKFSAEEVDILIIDEADRMLDMGFSSVVQAIALEAQGRKQNML 183

Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280
            +     G         L+D     +        +       I          
Sbjct: 184 FSATLEGGGVQRFAREVLKDPIEIDV---DAPRSEKAKIHQWIHLADDKEHKF 233


>gi|71004464|ref|XP_756898.1| hypothetical protein UM00751.1 [Ustilago maydis 521]
 gi|74704380|sp|Q4PGL2|INO80_USTMA RecName: Full=Putative DNA helicase INO80
 gi|46095890|gb|EAK81123.1| hypothetical protein UM00751.1 [Ustilago maydis 521]
          Length = 1910

 Score = 41.9 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 54/230 (23%), Gaps = 31/230 (13%)

Query: 53   RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GMS 109
             +QL+ +  +       +N               G+GKT  +  +M +L           
Sbjct: 1000 EYQLKGLNWLANLYEQGINGILADEM--------GLGKTVQSISLMAYLAEVHDIWGPFL 1051

Query: 110  IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
            +I  A++          E+SK++  L    ++           +      + +  +    
Sbjct: 1052 VIAPASTLHN----WQQEISKFVPTLKALPYWGNVKDRAVLRKF---WNRKQISYNRDAP 1104

Query: 170  TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                 T  +                +  DEA                  N     ++T  
Sbjct: 1105 FHVLVTSYQLVVSDEKYFQRVKWQYMILDEAQAIKSSS-SIRWKTLLGFNCRNRLLLTGT 1163

Query: 230  TRRLNGWFYDIFNIPLEDW---KRYQIDTRTVEGIDSGFHEGIISRYGLD 276
                      + N   E W                 S +    I  +   
Sbjct: 1164 P---------VQNSMQELWALLHFIMPSLFDSHDEFSEWFSKDIESHAEQ 1204


>gi|332671921|ref|YP_004454929.1| type III restriction protein res subunit [Cellulomonas fimi ATCC
           484]
 gi|332340959|gb|AEE47542.1| type III restriction protein res subunit [Cellulomonas fimi ATCC
           484]
          Length = 1029

 Score = 41.9 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 88/307 (28%), Gaps = 45/307 (14%)

Query: 4   LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63
            +  D   EQ   E           +  +           PLE   +PH +Q   +E ++
Sbjct: 277 FVPYDP--EQFAAEQRRAGNSDHGPRVML----------SPLE--VRPHPFQSRLLELLE 322

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
           V      + +        + A  G GKT + A     L        ++ +A+ E  L  +
Sbjct: 323 VSRQRGHHRNL-------LVAATGTGKTVMAALDYARLRRRLGSARLLFVAHREEILDQS 375

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
           L                F      L  + +  + + QS   D  H   + ++ +     +
Sbjct: 376 L--------------ATFRHT---LRETQFGEKWVGQSRPRDFDHVFASVQSLNANGLGS 418

Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243
               H      V  DE         + I    T + P     +T+   R +G     +  
Sbjct: 419 LDPEHFD---VVIIDEFHHAAAASYERI---LTAVKPKELLGLTATPERTDGLPILQWFD 472

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
                +    D    + + + F    +       +V      G   +   N +   +   
Sbjct: 473 HRIAAELRLWDAIDQQHL-APFVYYGVHDGLDLREVPWRRGRGYDVEALSNLYTSSDAWA 531

Query: 304 EAMSREA 310
             + +E 
Sbjct: 532 RRVIKEV 538


>gi|83591582|ref|YP_425334.1| Type III restriction enzyme, res subunit [Rhodospirillum rubrum
           ATCC 11170]
 gi|83574496|gb|ABC21047.1| Type III restriction enzyme, res subunit [Rhodospirillum rubrum
           ATCC 11170]
          Length = 1014

 Score = 41.9 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 23/77 (29%), Gaps = 12/77 (15%)

Query: 38  WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97
           W  +  P         W          H       +NP + + A+    G GKTT+ A +
Sbjct: 141 WLTEVAPKLGKKGERFW---------DHIKGANEQANPELLRLALKLATGAGKTTVMAML 191

Query: 98  MLW---LISTRPGMSII 111
           + W        P     
Sbjct: 192 IAWQTVNAVRHPNSKTF 208


>gi|199581427|gb|ACH89415.1| FclIR [Flavobacterium columnare]
          Length = 974

 Score = 41.9 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 65/241 (26%), Gaps = 23/241 (9%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P   Q   ++                         +G GK+ L   +  W++       +
Sbjct: 206 PRPHQYFALKEAQKFIQQKEGGIIWHT--------QGSGKSILMIILAKWILENVTNSRV 257

Query: 111 ICI---ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
           + +      + Q+ +T      K ++     +          P    + + +     ++ 
Sbjct: 258 VILTDRTELDKQIADTFEGIGEKDIARTRSGNELMYFLTQPKPRLIASLIHKFGNKGETD 317

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
           +     +T+ EE     +       + VF DE           +      +  N  +I  
Sbjct: 318 Y-----KTFIEEIKSNPIPIQGN--VFVFVDECH---RTQGGKLNETMKAVLQNAIFIGF 367

Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
           + T  L        +I       Y+ +    +G+               S   + ++   
Sbjct: 368 TGTPLLQKDKQTTMDIFGRYIHTYKFNEAVTDGVVKDLVYEGRDIEQKLSS--QDKVDAW 425

Query: 288 F 288
           F
Sbjct: 426 F 426


>gi|85059174|ref|YP_454876.1| hypothetical protein SG1196 [Sodalis glossinidius str. 'morsitans']
 gi|84779694|dbj|BAE74471.1| hypothetical protein [Sodalis glossinidius str. 'morsitans']
          Length = 536

 Score = 41.9 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/212 (9%), Positives = 46/212 (21%), Gaps = 24/212 (11%)

Query: 54  WQLEFMEAVDVHCHSNVNNSNPTIFKCAI-SAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
           W       V   CH             A+    RG GK+T+ A    W         I+ 
Sbjct: 11  WAERMGWDVPD-CHYRACYWLEHRGNLAVLRCFRGFGKSTILAVYNAWRYYRDRQYRILH 69

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            + S++  + T     +   +    +        ++          +++  + +K     
Sbjct: 70  QSESDSTARKTSRDTQNVLRNHPLTKGMLAKSIGAVEQWSVEGAHDKRNASMFAKGILSN 129

Query: 173 CRTYSE--------ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
                         E P     P     +     E +                     F 
Sbjct: 130 VTGARANECQNDDVEVPGNIQTPEAREKLRYRLSEQTHI-----------LIPGGRKLF- 177

Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256
                    +  + ++     +          
Sbjct: 178 --IGTPHTHDSLYDEMEAAGADCLTIKLFSHE 207


>gi|285808643|gb|ADC36161.1| hypothetical protein [uncultured bacterium 162]
          Length = 273

 Score = 41.9 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/211 (10%), Positives = 54/211 (25%), Gaps = 37/211 (17%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q+  +++++ H   N         +  I A  G GKT     ++      R     +
Sbjct: 24  RTYQVRLLDSLNDHLDDN---------RVHIVAAPGSGKTIFGIEVV-----RRINKRTL 69

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL------------E 159
            +A + T         + ++L +   R  +    +                        E
Sbjct: 70  VLAPTTTIRDQWAERLIQQFLPIGDSRPDWVSTDIRKPRRLTIVTYQALHALCSGQPDHE 129

Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM----------AVFNDEASGTPDIINK 209
            +  ++S+           E  +          +           +  DEA        +
Sbjct: 130 PTENLESEENLSFSPAIVIENGNGDGNAKAAEQVELPASLSRFETLLVDEAHHLKAEWWR 189

Query: 210 SILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
           ++  F           +T+        F   
Sbjct: 190 TLT-FVVNRLRPTVIALTATPPYDVSPFEWQ 219


>gi|310722509|ref|YP_003969332.1| Dda DNA helicase [Aeromonas phage phiAS5]
 gi|306021352|gb|ADM79886.1| Dda DNA helicase [Aeromonas phage phiAS5]
          Length = 454

 Score = 41.9 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 43/154 (27%), Gaps = 27/154 (17%)

Query: 62  VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121
           +      +++          IS   G GK+ L   ++  LI    G  +I  A +  Q K
Sbjct: 13  LTDCQKRSIDAVLNDRSHITISGPAGSGKSFLTKILIKKLIEKNNGG-VILSAPT-HQAK 70

Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
             L                    + ++H          + +    +  +   +    E  
Sbjct: 71  IVLSKMSG-------------YTASTIHSIMKIHPDTYEDVREFKQSKSDKAKKDLNEVR 117

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
                        +  DEAS   + + + IL   
Sbjct: 118 ------------YLIVDEASMVDNDLFEIILKSV 139


>gi|269120813|ref|YP_003308990.1| type III restriction protein res subunit [Sebaldella termitidis
           ATCC 33386]
 gi|268614691|gb|ACZ09059.1| type III restriction protein res subunit [Sebaldella termitidis
           ATCC 33386]
          Length = 993

 Score = 41.9 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 71/225 (31%), Gaps = 40/225 (17%)

Query: 16  HEMLMHAECVLSFKNFVMRF-----FPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70
             + ++++ +  ++NF  +      F +  +    E F  P++ Q E +E + +      
Sbjct: 229 EAIELNSKFIDMYENFRNKSGNIETFDFKKEETEKEIFM-PNKMQSELLEKLKLTREFGN 287

Query: 71  NNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK 130
                   K  I A  G GKT L A  +L +                 +L N  +   SK
Sbjct: 288 K-------KGLIVAATGTGKTYLAAMDILKM-----NPKSFLFIAHREELINNAFNVFSK 335

Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
            L    + + F   S   +   +    ++                               
Sbjct: 336 ILPYDKNEYGFLTGSEKNYNKRFMFSTIQSLYK-------------------NTEYFSKD 376

Query: 191 HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
               +  DE   +     ++++ +F   NP     +T+   R++G
Sbjct: 377 AFDYIIIDEFHHSKASTYEAVINYF---NPFFMLGLTATPERMDG 418


>gi|88813625|ref|ZP_01128856.1| Type III restriction enzyme, res subunit [Nitrococcus mobilis
           Nb-231]
 gi|88789130|gb|EAR20266.1| Type III restriction enzyme, res subunit [Nitrococcus mobilis
           Nb-231]
          Length = 531

 Score = 41.9 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 46/181 (25%), Gaps = 15/181 (8%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            +Q E +             +   +         G GKT      +   +       +  
Sbjct: 130 DYQREIVLRTQHVLEEPPRKALLHM-------PTGSGKTRTAMHFIARHLQKYGPTLVCW 182

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           +ANS   L+     E  +   ML  R      S+ ++       +   S+          
Sbjct: 183 LANSGELLEQAA-DEAERSWRMLGDR------SIGIYRFWGDHSVDLGSVRDGVLVAGFA 235

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASG-TPDIINKSILGFFTELNPNRFWIMTSNTR 231
               +  R    +            DEA           I   +T+   N    +T+   
Sbjct: 236 KMHAAYLREQNTLIALGDRSSLTVVDEAHQAIAPTYRSVIDALYTKRPVNALLGLTATPG 295

Query: 232 R 232
           R
Sbjct: 296 R 296


>gi|291563087|emb|CBL41903.1| DNA or RNA helicases of superfamily II [butyrate-producing
           bacterium SS3/4]
          Length = 691

 Score = 41.9 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 56/187 (29%), Gaps = 36/187 (19%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           +P   Q+E + A++               +  + A  GIGKT L A        ++    
Sbjct: 197 EPRGAQIEALCALENSRAEGAV-------RGIVQAATGIGKTYLAA------FDSKKYQK 243

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           ++ +A+ E  L                  +   +   ++  S  Y    E+         
Sbjct: 244 VLFVAHREEIL------------------NQAAVSFHNVRNSDDYGFFNEREKATGKSVI 285

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNRFWIMTS 228
             +  T   +   T       +   +  DE      D   + I  F     P     +T+
Sbjct: 286 FASVYTLGRKEYLTEKYFSEDYFDYIVIDEFHHAVNDGYLRIIDYF----KPKFLLGLTA 341

Query: 229 NTRRLNG 235
              R++G
Sbjct: 342 TPERMDG 348


>gi|261881047|ref|ZP_06007474.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270332164|gb|EFA42950.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 375

 Score = 41.9 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 52/177 (29%), Gaps = 11/177 (6%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
             +  P  +  +  + V     +  N S       A+ + R IGK+ L       +    
Sbjct: 11  YGYKGP-EYFCDREQEVAQLISALHNES-----NVALISPRRIGKSGLIHHAFHLIREQS 64

Query: 106 PGMSIICIA--NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
           P ++ I I   N+ +Q K+ + A  S+ ++ L       ++  +    G+   +      
Sbjct: 65  PDIACIYIDILNTRSQ-KDFIDAFASEVIAALGGNLQTALKKAASFFKGFRPTITFDEFS 123

Query: 164 IDSKHYTITCRTYSEERPDT-FVGPHNTHGMAVF-NDEASGTPDIINKSILGFFTEL 218
                      +      +  F   H +        DE     +     +       
Sbjct: 124 GAPTFSFHVEHSKESNTIEQIFKYIHQSGKRCYIAFDEFQQITNYPEPGLEALLRSQ 180


>gi|261381104|ref|ZP_05985677.1| CRISPR-associated helicase Cas3 domain protein [Neisseria subflava
           NJ9703]
 gi|284795902|gb|EFC51249.1| CRISPR-associated helicase Cas3 domain protein [Neisseria subflava
           NJ9703]
          Length = 762

 Score = 41.9 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 47/175 (26%), Gaps = 14/175 (8%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
             G GKT  +    L          +I +    + ++    AE  K    L  +   E  
Sbjct: 268 PTGGGKTFTSMAFALEYAKRHGMRRVIYVIPFTSIIEQNA-AEFRKAFGELGEQAVLEHH 326

Query: 145 SLSLHPS-GWYAELLEQSMGIDSKHYTITCRTYS-------EERPDTFVGPHNTHGMAVF 196
           S          A   +  +  ++    I   T          +R       HN  G  + 
Sbjct: 327 STFDDGKLQNEATKDKLRLASENWDAPIVVTTAVQFFESLFADRSSRCRKLHNIAGSVII 386

Query: 197 NDEASGTPDI----INKSILGFFTELNPNRFWIMTSNTR-RLNGWFYDIFNIPLE 246
            DEA   P      I ++I         +      +    +    FY  F    E
Sbjct: 387 LDEAQMLPLNLLLPIMQAIKELAQNYRCSVVMCTATQPAVQAENGFYRGFENVRE 441


>gi|195590910|ref|XP_002085187.1| GD12444 [Drosophila simulans]
 gi|194197196|gb|EDX10772.1| GD12444 [Drosophila simulans]
          Length = 687

 Score = 41.9 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 42/145 (28%), Gaps = 12/145 (8%)

Query: 72  NSNPTIFK-CAISAGRGIGKTTLNAWMMLWLISTRPGMS-----IICIANSETQLKNTLW 125
              P   +   +SA  G GKT   A  ++ L+S R         ++ +A    Q+   + 
Sbjct: 177 KPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVDCKVRALVVLPVAELALQVYRVIS 236

Query: 126 AEVSKW-LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
           A  SK  L         +++         Y                +T      E     
Sbjct: 237 ALCSKTDLEACLLSKQHKLEDEQEKLVEQYKGKY-----YSKADIVVTTPGRLVEHLHAT 291

Query: 185 VGPHNTHGMAVFNDEASGTPDIINK 209
            G        +  DEA    D + +
Sbjct: 292 KGFCLKSLKFLIIDEADRIMDAVFQ 316


>gi|153839129|ref|ZP_01991796.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|260902834|ref|ZP_05911229.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|149747384|gb|EDM58352.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|308107831|gb|EFO45371.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
          Length = 430

 Score = 41.9 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 26/272 (9%), Positives = 74/272 (27%), Gaps = 38/272 (13%)

Query: 87  GIGKTTLNAWMMLWLIST------RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           G GKT   +  M+  +        R     + +A +          E+++ ++    + +
Sbjct: 48  GTGKTAAFSLPMIQQLLDSGRTASRKTARALILAPT---------RELAEQIADNI-KAY 97

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
            +   LS+       ++  Q   +++    +       E           +   +  DEA
Sbjct: 98  TKYTDLSVVAVFGGRKMSSQISALENGVDILVATPGRLEEHIEQGNVSVANLEFLVFDEA 157

Query: 201 SGTPDIIN--KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
               D+                 +  + ++ T               +  +  + +T   
Sbjct: 158 DRILDMGFIHAVRKIMLDVDTDPQIMMFSATTSSQLNLLAKDILRKPKRIEVERANTTAH 217

Query: 259 EG------IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY----------- 301
                   +D      ++S      +  ++ +   + +   +                  
Sbjct: 218 TVAHVLYPVDQERKTELLSELIGRKNWQQVLVFVNYKETANDVVKELKLDGIKAVVCHGD 277

Query: 302 -IEEAMSREAIDDLYA--PLIMGCDIAGEGGD 330
             + A  R   +       +++  D+A  G D
Sbjct: 278 RAQSARRRALEEFKTGKVRVMVATDVAARGLD 309


>gi|111018693|ref|YP_701665.1| helicase [Rhodococcus jostii RHA1]
 gi|110818223|gb|ABG93507.1| possible helicase [Rhodococcus jostii RHA1]
          Length = 549

 Score = 41.9 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 38/142 (26%), Gaps = 5/142 (3%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  +  G G GKT L       L     G  +  I  S   L + L    + W      R
Sbjct: 221 RVEVRGGAGSGKTFLAVEKARRLAKQ--GQRVALICYS-HGLASYLERLTATW--SYEER 275

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
             +  +  +L       E  ++S+                        P      AV  D
Sbjct: 276 PAYVGEFHALGQRWGAPEGPDESIRTTDTVQFWEHDLPRHMAELASDLPLRDRFDAVVVD 335

Query: 199 EASGTPDIINKSILGFFTELNP 220
           EA    D     +L    +   
Sbjct: 336 EAQDFADDWWGPLLAALRDEEA 357


>gi|13399860|pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
           Hyperthermophile Methanococcus Jannaschii
 gi|13399861|pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
           Hyperthermophile Methanococcus Jannaschii
          Length = 367

 Score = 41.9 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/192 (9%), Positives = 44/192 (22%), Gaps = 25/192 (13%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
            F +P   Q + +                  +     A  G GKT   A  ++ L++   
Sbjct: 25  GFEKPTDIQXKVI-----------PLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENN 73

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
           G+  I +  +            +  +  L      ++         +  + +   +    
Sbjct: 74  GIEAIILTPTRELAIQV-----ADEIESLKGNKNLKI------AKIYGGKAIYPQIKALK 122

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFF--TELNPNRF 223
               +                +  +      DEA         K +         +    
Sbjct: 123 NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEXLNXGFIKDVEKILNACNKDKRIL 182

Query: 224 WIMTSNTRRLNG 235
               +  R +  
Sbjct: 183 LFSATXPREILN 194


>gi|297824187|ref|XP_002879976.1| hypothetical protein ARALYDRAFT_483318 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297325815|gb|EFH56235.1| hypothetical protein ARALYDRAFT_483318 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 2168

 Score = 41.5 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/216 (10%), Positives = 52/216 (24%), Gaps = 23/216 (10%)

Query: 57   EFMEAVDVHCHSNVNNSNPTIFKCA----ISAGRGIGKTTLNAWMMLWLISTRPGM--SI 110
            E +     H +         ++  +    ++A  G GKT    + +L      P     +
Sbjct: 1343 ETLYQDFKHFNPVQTQVFSVLYNTSDNVLVAAPTGSGKTICAEFAILRNHLEGPDSTMRV 1402

Query: 111  ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
            + +A  E   K        K+   L  R        +L                  +   
Sbjct: 1403 VYVAPLEAIAKEQFRDWEKKFGKGLGLRVVELTGETALDLKLLEK----------GQIII 1452

Query: 171  ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP-------DIINKSILGFFTELNPNRF 223
             T   +           +         DE            ++I   +    +++     
Sbjct: 1453 STPEKWDALSRRWKQRKYIQQVSLFIVDELHLIGGQGGPVLEVIVSRMRYISSQVGNKIR 1512

Query: 224  WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
             +  S +        +        +  +  + R V 
Sbjct: 1513 IVALSTSLANAKDLGEWIGASSCGFFNFPPNVRPVP 1548


>gi|294501273|ref|YP_003564973.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           megaterium QM B1551]
 gi|295706620|ref|YP_003599695.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
 gi|294351210|gb|ADE71539.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           megaterium QM B1551]
 gi|294804279|gb|ADF41345.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           megaterium DSM 319]
          Length = 439

 Score = 41.5 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 55/224 (24%), Gaps = 29/224 (12%)

Query: 30  NFVMRFF-PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGI 88
           NF    F P+ I+      F QP   Q   + +V                     +  G 
Sbjct: 5   NFERFEFQPFLIEAIKQLGFYQPTEIQERLIPSVLKGES------------VIGQSQTGT 52

Query: 89  GKTTLNAWMMLWLISTRPGMS----IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
           GKT      +L L+           ++  A +           +         +H  E +
Sbjct: 53  GKTH---AYLLPLLEKVDPKKEEVQVVITAPTRELASQIYQEVLK------LTKHSAEGE 103

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
            +S        +       +  +   +                      A+  DEA    
Sbjct: 104 EISAKCFIGGTDKQRTIDKLKKQPQVVVGTPARLFDLVNEKALVVYTTKALVVDEADLML 163

Query: 205 DIINKSILGFFTELNPNRFWIMTSN---TRRLNGWFYDIFNIPL 245
           D+     +       P +  ++  +     +L  +       P 
Sbjct: 164 DMGFLEDVDRLASNMPEKLQMLVFSATIPEKLKPFLKKYMENPK 207


>gi|255513283|gb|EET89549.1| DEAD_2 domain protein [Candidatus Micrarchaeum acidiphilum ARMAN-2]
          Length = 614

 Score = 41.5 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 9/80 (11%)

Query: 45  LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
           L  FS P ++Q E M+ +        +          ++A  GIGKT       L     
Sbjct: 6   LFRFSAPRQYQKEMMQDIYGAVSRGQS--------ILVNAPTGIGKTDAAIGATLTYALK 57

Query: 105 RPGMSIICIANSETQLKNTL 124
                +  +    +Q K  +
Sbjct: 58  N-SKDVFFLTPKISQHKIAM 76


>gi|219683588|ref|YP_002469971.1| DNA or RNA helicase of superfamily II [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|219621238|gb|ACL29395.1| DNA or RNA helicase of superfamily II [Bifidobacterium animalis
           subsp. lactis AD011]
          Length = 1020

 Score = 41.5 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 62/187 (33%), Gaps = 32/187 (17%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           +P+  Q + +  +                K  + +  G GKT L+A    + +       
Sbjct: 232 EPNAMQRDALANIRKLREEGE-------RKAVVISATGTGKTYLSA----FDVRQFQPKR 280

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           ++ +AN +T LK+    E  + +          +                 S   D+K+ 
Sbjct: 281 MLYVANRDTILKSA--RESYQRVLGCDEGELGLLTGN--------------SKQHDAKYV 324

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
             T  T      + +          +  DEA  +     +S++ +F+E +      MT+ 
Sbjct: 325 FATVDTLRRHMMEWYEP---DDFDYILIDEAHHSGANNYRSVIDYFSEAD--FMLGMTAT 379

Query: 230 TRRLNGW 236
             R + +
Sbjct: 380 PERTDNF 386


>gi|198422283|ref|XP_002119912.1| PREDICTED: similar to capping protein (actin filament) muscle
           Z-line, alpha 1 [Ciona intestinalis]
          Length = 968

 Score = 41.5 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 36/146 (24%), Gaps = 9/146 (6%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV-----SKWLSMLPHRHWF 141
           G GKT      +  +    P    +  A S +         +      +   M      +
Sbjct: 517 GTGKTVTMVEAIKQVHKFHPDYKCLVCAPSNSACDLMAERLIGHIDKKRMFRMCAMSRQW 576

Query: 142 EMQSLSLHPSGWYAELLEQS---MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                 + P   Y               K YT+   T       ++    N H   VF D
Sbjct: 577 RDVPEKVKPISNYNSSTGDYYYPPLETLKEYTVILTTLITAGRISWAEFPNNHFNYVFID 636

Query: 199 EA-SGTPDIINKSILGFFTELNPNRF 223
           EA          ++ G   +      
Sbjct: 637 EAGHAVEPECMVAVEGILAKRGRVVL 662


>gi|183602543|ref|ZP_02963908.1| DNA or RNA helicase of superfamily II [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|241190617|ref|YP_002968011.1| superfamily II DNA/RNA helicase [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196023|ref|YP_002969578.1| superfamily II DNA/RNA helicase [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218184|gb|EDT88830.1| DNA or RNA helicase of superfamily II [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|240249009|gb|ACS45949.1| superfamily II DNA/RNA helicase [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250577|gb|ACS47516.1| superfamily II DNA/RNA helicase [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|289178356|gb|ADC85602.1| DNA/RNA helicase (DEAD/DEAH box family) [Bifidobacterium animalis
           subsp. lactis BB-12]
 gi|295793606|gb|ADG33141.1| superfamily II DNA/RNA helicase [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 1041

 Score = 41.5 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 62/187 (33%), Gaps = 32/187 (17%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           +P+  Q + +  +                K  + +  G GKT L+A    + +       
Sbjct: 253 EPNAMQRDALANIRKLREEGE-------RKAVVISATGTGKTYLSA----FDVRQFQPKR 301

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           ++ +AN +T LK+    E  + +          +                 S   D+K+ 
Sbjct: 302 MLYVANRDTILKSA--RESYQRVLGCDEGELGLLTGN--------------SKQHDAKYV 345

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
             T  T      + +          +  DEA  +     +S++ +F+E +      MT+ 
Sbjct: 346 FATVDTLRRHMMEWYEP---DDFDYILIDEAHHSGANNYRSVIDYFSEAD--FMLGMTAT 400

Query: 230 TRRLNGW 236
             R + +
Sbjct: 401 PERTDNF 407


>gi|182420170|ref|ZP_02951401.1| DNA/RNA helicase [Clostridium butyricum 5521]
 gi|237667593|ref|ZP_04527577.1| type III restriction protein, res subunit [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182375972|gb|EDT73562.1| DNA/RNA helicase [Clostridium butyricum 5521]
 gi|237655941|gb|EEP53497.1| type III restriction protein, res subunit [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 833

 Score = 41.5 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 54/183 (29%), Gaps = 34/183 (18%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           +P   Q+E + A++       +       K  I A  GIGKT L A        ++    
Sbjct: 228 EPKGAQIEALYALNNTREEGFD-------KALIVAATGIGKTYLAA------FDSKDSQR 274

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I+ +A+ E  +K           +     ++F                       D    
Sbjct: 275 ILFVAHREEIIKQAA-RSFKNVRNSEDIGYFFNSTKDK-----------------DKSMI 316

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
               +T  ++           +   +  DE         + I+ +FT   P     +T+ 
Sbjct: 317 FALVQTLGKDEYLNEDYFKKDYFDYIIIDEFHHAVSNNYRKIIDYFT---PKFLLGLTAT 373

Query: 230 TRR 232
             R
Sbjct: 374 PER 376


>gi|241205120|ref|YP_002976216.1| type III restriction protein res subunit [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240859010|gb|ACS56677.1| type III restriction protein res subunit [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 930

 Score = 41.5 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 25/213 (11%), Positives = 54/213 (25%), Gaps = 36/213 (16%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q + ++ +      +  +         ++A  G GKT L   +M      R G + +
Sbjct: 11  RAYQQKILDDLANLIGDDGLH--------IVAAP-GSGKTVLGLEVM-----CRLGEATL 56

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWY--------AELLEQSMG 163
            +A S   +++  WA   + + + P     E  S  +   G                   
Sbjct: 57  ILAPS-KTIRDQ-WAHRLRTMFLPPDLAEPEWISHDVRAPGTVTIITYQALHAAFSGHPS 114

Query: 164 IDSKHYTITCRTYSEERPDTFVG------------PHNTHGMAVFNDEASGTPDIINKSI 211
            +         +   E  +                        +  DEA    +   K++
Sbjct: 115 EEEVLDGEEEGSDGAESGEPGKQETEKARKKIIAKLREEKVRTLVLDEAHHLRNEWWKAL 174

Query: 212 LGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244
                 L       +T+                
Sbjct: 175 TMLKEALGQPTVVALTATPPYDVDPQEWDRYQA 207


>gi|306821248|ref|ZP_07454862.1| ATP-dependent RNA helicase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304550760|gb|EFM38737.1| ATP-dependent RNA helicase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 517

 Score = 41.5 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 66/240 (27%), Gaps = 21/240 (8%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAG-------RGIGKTTLNAWMM 98
             F +        ++A+D     ++      I   A++          G GKT      +
Sbjct: 1   MKFRELTDINENILKAIDAMGFEDMTQIQEKIVPVAVNKCDVIGQSQTGTGKTVAFGIPL 60

Query: 99  LWLISTRPGM-SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
           +  +         + +  +         AE+++ L  LP +                 E+
Sbjct: 61  IQNLDFDEEKIQSVIMTPTRELAIQVT-AEINRLLRFLPTKAVALY---------GGEEI 110

Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFT 216
             Q   +  +   I                   +   V  DEA         + I     
Sbjct: 111 TRQIKRLKDRPAIIVATPGRLMDHIRRRTVKTEYINTVVLDEADEMLSMGFVEDIEEILE 170

Query: 217 E-LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275
           +  N +   + ++          + F +    + + +  T TV+ ID  + +   S    
Sbjct: 171 QMPNRSITMLFSATMPDRIKKISEKF-LKDPLFVKVERKTLTVDSIDQKYIQIQESDKFD 229


>gi|242005506|ref|XP_002423606.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212506754|gb|EEB10868.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 1199

 Score = 41.5 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/214 (10%), Positives = 54/214 (25%), Gaps = 27/214 (12%)

Query: 54  WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113
           W  + +         NV           +    G GKT+    +++ + +  PG  ++  
Sbjct: 708 WHSKNLNERQKMAVINVLKGQGRPLPYIVFGPPGTGKTSTLIELIIQIYTLIPGSRLLVC 767

Query: 114 ANSETQLKNTLWAEVSK------WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
           A   +         +         L  L     F    +      +   +  +     + 
Sbjct: 768 APLNSAADLICERLIEIGKFKPGQLVRLIAFQRFLQDKVPPKLVPYSTLVSLEDDTGKNN 827

Query: 168 HYTITCRTYSEERPDTFVGPHN-------------------THGMAVFNDEASGTPDIIN 208
                 +          +G H                     H   +  DEA    +   
Sbjct: 828 ESLKFKKNIRISSASQLIGRHRITVGTCSSVGYLHYLAFPLEHFTHILVDEAGQATEP-- 885

Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242
           + ++    +   N   ++  + ++L    +  F 
Sbjct: 886 EILIPASFQSFTNSRVVLFGDPQQLGPVCFGKFA 919


>gi|195661202|ref|YP_002117670.1| large terminase subunit [Lactobacillus phage Lrm1]
 gi|166200916|gb|ABY84303.1| large terminase subunit [Lactobacillus phage Lrm1]
          Length = 570

 Score = 41.5 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 40/322 (12%), Positives = 86/322 (26%), Gaps = 60/322 (18%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFK---CAISAGRGIGKTTLNAWMMLWLISTRPG-- 107
            +Q   + ++       V+  +P I +     IS  R  GK+ L + ++L+         
Sbjct: 74  PFQKFIIGSIY----GWVDKDDPNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPA 129

Query: 108 -MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
               +  A ++ +    ++  V   L  L                          +  D 
Sbjct: 130 NKRQLYTAANDRKQAGIVFGMVKDRLRAL--------------MRKDPGIKRMVKITRDE 175

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS--GTPDIINKSILGFFTELNPNRFW 224
                   T      DT              DE +   T D+I     G     +   F 
Sbjct: 176 LVNLDDGSTIRSFSRDTG-LVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFI 234

Query: 225 IMTSNTRRLNGWFYDIFNIPL---------EDWKRYQIDTRTVEGIDSG--FHEGI---- 269
           I T+        F   +             E +  +  +   V+ +D    + +      
Sbjct: 235 ISTAGFDMNVPMFQQNYPYAKKVLSGEETAERYFAFIAEQDNVQEVDDPNSWIKSNPLLD 294

Query: 270 -----------------ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
                             +R     +   ++    + Q   ++++  +  ++A   E  D
Sbjct: 295 VDIVHDQITDYLTTKLSQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKDAELSEKPD 354

Query: 313 DLYAPLIMGCDIAGEGGDKTVV 334
                  +G D+     D   +
Sbjct: 355 IRGKRAWIGIDVGRT-SDLFAI 375


>gi|325291138|ref|YP_004267319.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324966539|gb|ADY57318.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 518

 Score = 41.5 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 34/307 (11%), Positives = 72/307 (23%), Gaps = 33/307 (10%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
            +                          A  G GKT   A  M+  +          +  
Sbjct: 18  ADMGFEEATPIQEKTIPVAMAGRDIIGQAQTGTGKTAAFAIPMIENLERHAEGIGGLVVT 77

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
              +L   +  E++K                   P     ++  Q   + ++   I    
Sbjct: 78  PTRELAVQVAEEINKIGQFKGIHAQ---------PIYGGQDINRQIRALRNRPQIIVGTP 128

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFF--TELNPNRFWIMTSNTRR 232
                          H      DEA         + I       +          +  + 
Sbjct: 129 GRLMDHMRRHTIRLDHVSMAVLDEADEMLSMGFIEDIESILGEIQHKHQTLLFSATMPQS 188

Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ-Q 291
           +          P  ++   +    TV   +  + E          +  + ++L +    Q
Sbjct: 189 ILNLSKRFMLEP--EFISIKAKEVTVPNTEQYYVE--------LPERQKFDVLCRLLDIQ 238

Query: 292 EVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEG--GDKTVVVFRRGNIIEHIFDWS 349
             +  I     +  +                  + EG  GD T    RR +++ H  +  
Sbjct: 239 SPDLAIVFGRTKRRVDELYEALNKRGY------SAEGIHGDLT--QLRRDSVLRHFKEGV 290

Query: 350 AKLIQET 356
             ++  T
Sbjct: 291 TDILVAT 297


>gi|325107622|ref|YP_004268690.1| Xenobiotic-transporting ATPase [Planctomyces brasiliensis DSM 5305]
 gi|324967890|gb|ADY58668.1| Xenobiotic-transporting ATPase [Planctomyces brasiliensis DSM 5305]
          Length = 652

 Score = 41.5 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 59/218 (27%), Gaps = 15/218 (6%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL-----ISTRPGMSIIC 112
           F    + +   +VN   P   K  I    G GK+TL + +  +           G+ +  
Sbjct: 433 FAYNENEYVIRDVNLQIPYREKIGIVGPNGGGKSTLTSLLCRFYDPQQGAVKIDGIDVRN 492

Query: 113 IANSETQLK-------NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
           ++  + + +         L+ E  ++       +  E Q        +  E +       
Sbjct: 493 LSLHDLRGRIGLVTQQTELFNESIRYNITYGTGNVTEEQIEEAARKAYAHEFISSLPEGY 552

Query: 166 SKHYTITCRTYSEERPDTFVGPHN--THGMAVFNDEA-SGTPDIINKSILGFFTELNPNR 222
                   +  S  +            +   +  DEA S         IL    E   N 
Sbjct: 553 DTPVGQNGQKLSGGQRQRIALARAFLKNPEIMILDEATSQIDVASEDLILDAIREHANNC 612

Query: 223 FWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
             +  ++   + G    +  +         +  +    
Sbjct: 613 TVLFITHRTSVLGIVDSVIEVQKGAVTHRPVTAQESSR 650


>gi|195376095|ref|XP_002046832.1| GJ12271 [Drosophila virilis]
 gi|194153990|gb|EDW69174.1| GJ12271 [Drosophila virilis]
          Length = 1180

 Score = 41.5 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 53/202 (26%), Gaps = 27/202 (13%)

Query: 54  WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113
           W  E +  +      NV           I    G GKT      +L L+   PG  ++  
Sbjct: 691 WFNEGLNCIQKRAVYNVLRGETEKMPYVIFGPPGTGKTVTLVETILQLVRHVPGSRLLVG 750

Query: 114 ANSETQLKNTLWAEV------SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
             S +         +            L  ++  E   +    + + A +   ++  D  
Sbjct: 751 TPSNSSADLITKRIIASNALNHGEFIRLVSQNQVEKDLVPPELASYCATVDIGTVDSDHD 810

Query: 168 HYTITCRTYSEERPDTFVGPHN-------------------THGMAVFNDEASGTPDIIN 208
              IT           ++G H                     H   V  DEA    +   
Sbjct: 811 SMIITESGLKLRCQAKYLGKHLITISTCTTLGNFIQMDFLPEHFTHVLIDEAGQCTEP-- 868

Query: 209 KSILGFFTELNPNRFWIMTSNT 230
           ++++            ++  + 
Sbjct: 869 ETMVPIVLLARKRSQVVLAGDP 890


>gi|160946079|ref|ZP_02093295.1| hypothetical protein PEPMIC_00030 [Parvimonas micra ATCC 33270]
 gi|158447842|gb|EDP24837.1| hypothetical protein PEPMIC_00030 [Parvimonas micra ATCC 33270]
          Length = 360

 Score = 41.5 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 62/235 (26%), Gaps = 28/235 (11%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
             WQ   + ++    H +            +  GR  GKTTL + +  +++      G  
Sbjct: 117 QPWQHFIIGSLFGWVHKDTGIRRFREGLVFV--GRKNGKTTLISGLSNYMLGFDGENGAR 174

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I  +AN+E Q    L+ E    +   P        S          +  +    I+++  
Sbjct: 175 IYVLANAEQQAHE-LFDEAKAMVEKSP------YLSKRYKAQRSVIKYDKTYSKIEAR-- 225

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTS 228
                                +      DE     D  +   I              +T+
Sbjct: 226 -----------ASDSKRLDGLNTHLGIFDEIHEFKDFKLINVIKKSRGARKQPLIIYITT 274

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283
               L+G   + +    E  +    +          +   +      D     I+
Sbjct: 275 AGYVLDGPLMNYYESAQECLENLDDNLDE---RTFYYIAKLDDPKEADHPELWIK 326


>gi|154287262|ref|XP_001544426.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150408067|gb|EDN03608.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 1332

 Score = 41.5 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 36/121 (29%), Gaps = 9/121 (7%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKTT  A ++        G S++  + + T + N L       +  L      ++   
Sbjct: 825 GTGKTTTIAHLI--RALASQGKSVLLTSYTHTAVDNILLKIKDDNIRTLRLGATTKIHPD 882

Query: 147 SLH---PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
                  +    E +E+   +      +         P      ++        DEAS  
Sbjct: 883 IRKFADLAATPKETIEELKDMYENSRIVATTCLGINHP----IFNSRMFDFCIVDEASQI 938

Query: 204 P 204
            
Sbjct: 939 T 939


>gi|296328513|ref|ZP_06871032.1| DNA/RNA helicase (DEAD/DEAH box family) [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
 gi|296154322|gb|EFG95121.1| DNA/RNA helicase (DEAD/DEAH box family) [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
          Length = 942

 Score = 41.5 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 66/194 (34%), Gaps = 35/194 (18%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P+  Q++ ++ ++     N         +  + +  G GKT L+A    + +       I
Sbjct: 210 PNSMQVQALKNLEETRKEND--------RALLISATGTGKTYLSA----FDVKQTKAKKI 257

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + +A+     K  L    + +  +L ++                 E+ + +  I++K   
Sbjct: 258 LFVAHR----KVILERSKNSYQRILKNKKM---------------EIFDSNFQINNKDEV 298

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
           +     +  +          +   +  DE         +SI  +F    P     +T+  
Sbjct: 299 VFAMVQTLNKEKNLNIFPKDYFDYIIIDEVHHGGAKTYQSIFEYF---KPKFLLGITATP 355

Query: 231 RRLNGW-FYDIFNI 243
            R + +  Y +FN 
Sbjct: 356 ERTDDFNIYQLFNY 369


>gi|288555762|ref|YP_003427697.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
 gi|288546922|gb|ADC50805.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
          Length = 454

 Score = 41.5 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 60/224 (26%), Gaps = 24/224 (10%)

Query: 27  SFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR 86
           +FK F ++ F   I+    + FS P   Q   + A+                     +  
Sbjct: 5   NFKRFELKPFL--IEALSGQRFSLPTEIQERLIPAIKNGKD------------VIGQSQT 50

Query: 87  GIGKTTLNAWMMLWLIS-TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
           G GKT      +L  I   +  +  I  A +       L+ E+ K L   P         
Sbjct: 51  GTGKTLSFLLPILDKIDPAKEEVQAIITAPTRELASQ-LFDELKKLLEHCPEEEMIHA-- 107

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
                     +      G+ ++ + +                       +  DEA    D
Sbjct: 108 ---KLLVGGTDRNRAIEGLKTQPHIVVGTAGRIGDLMDDKALLVYTAAMLVVDEADQMLD 164

Query: 206 IINKSILGFFTELNPNRFWIMTSN---TRRLNGWFYDIFNIPLE 246
           +   + +            +M  +     +L  +     N P  
Sbjct: 165 MGFIADVDKVASRMAEDLQMMIFSATIPEKLQPFLKKYMNDPRH 208


>gi|301092109|ref|XP_002896227.1| N-acetyltransferase 10 [Phytophthora infestans T30-4]
 gi|262094857|gb|EEY52909.1| N-acetyltransferase 10 [Phytophthora infestans T30-4]
          Length = 1102

 Score = 41.5 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 10/125 (8%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            A++AGRG GK+     M L         +I   A S   LK   +  V K    L ++ 
Sbjct: 280 VALTAGRGRGKSAAL-GMSLAGAVAYGYSNIFVTAPSPENLKTV-FEFVFKGFDALKYKE 337

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             + + +      +   ++  ++  + +      +    E+              V  DE
Sbjct: 338 HLDYEIVQSTNPEFNHAVVRVNIFREHRQTIQYIQPTHHEK--------LAQAELVAIDE 389

Query: 200 ASGTP 204
           A+  P
Sbjct: 390 AAAIP 394


>gi|261340099|ref|ZP_05967957.1| terminase, ATPase subunit [Enterobacter cancerogenus ATCC 35316]
 gi|288318026|gb|EFC56964.1| terminase, ATPase subunit [Enterobacter cancerogenus ATCC 35316]
          Length = 589

 Score = 41.5 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 39/343 (11%), Positives = 86/343 (25%), Gaps = 76/343 (22%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
           F +    +             +  + + R IG T   A   L       G + I ++ S+
Sbjct: 141 FFDQSFDYQLRWHKAGLEHRIRHILKS-RQIGATFYFARESLLRALKT-GQNQIFLSASK 198

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
           TQ          K++         ++    +      AEL+                 + 
Sbjct: 199 TQAY-----VFRKYIIAFARLVDVDLSGDPIVIGNNGAELI-----------------FL 236

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNT----- 230
               +T    +      ++ DE    P    + K   G  ++ +    +  T +T     
Sbjct: 237 GTNSNTAQSHNGD----LYVDEIFWIPNFQKLRKVASGMASQSHLRTTYFSTPSTLAHGA 292

Query: 231 -RRLNGWFYDIFNIPLEDWKRYQIDTR---------TVEGIDSGFHEGIIS--------- 271
               +G  ++      ++     I  +           +       E  ++         
Sbjct: 293 YPFWSGELFNRGRSNRDERVDIDISHQALAGGMLCGDGQWRQIVSIEDALAGGCTLFNLD 352

Query: 272 --RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM------SREAIDDLYAP-----L 318
             +    +D  R   + +F   +  +  P   ++  M        +       P     +
Sbjct: 353 QLKQENSADDFRNLFMCEFVD-DKASVFPFEELQRCMVDAMEEWEDFEPFADRPFNWRPV 411

Query: 319 IMGCDIAGEGGDKTVVVFRRGN-------IIEHIFDWSAKLIQ 354
            +G D +  G D                  I     W      
Sbjct: 412 WIGYDPSHTG-DSAGCAVLAPPLVAGGKFRILERHQWKGMDFA 453


>gi|157871882|ref|XP_001684490.1| mitochondrial DEAD box protein [Leishmania major strain Friedlin]
 gi|68127559|emb|CAJ05642.1| putative mitochondrial DEAD box protein [Leishmania major strain
           Friedlin]
          Length = 544

 Score = 41.5 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 46/177 (25%), Gaps = 20/177 (11%)

Query: 43  KPLEHFSQPH---RWQLEFMEAV----DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95
            PL  F +     RW  E ++ +                         A  G GKT   A
Sbjct: 89  TPLNSFEELRDAPRWLAEGLKTLKYPSTTDIQKFTIPLLANGHDVIGLAPTGSGKTVAFA 148

Query: 96  WMMLWLISTRPGMS--IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
              L  +   P  +  ++ +A +   ++ T      K    L        ++    P   
Sbjct: 149 VPALAGLKPNPDGTPSVLVLAPTRELVQQTT-----KVFQNLGCGQVRVCEAYGGAPRDL 203

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS 210
            A  L       +    +       +           +   +  DEA    D+  + 
Sbjct: 204 QARHLR------NGCDALVACPGRLKDFLDGGDVSIRNLSFLVFDEADRLLDMGFQV 254


>gi|38073423|gb|AAR10833.1| Hel61 [Leishmania major]
          Length = 544

 Score = 41.5 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 46/177 (25%), Gaps = 20/177 (11%)

Query: 43  KPLEHFSQPH---RWQLEFMEAV----DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95
            PL  F +     RW  E ++ +                         A  G GKT   A
Sbjct: 89  TPLNSFEELRDAPRWLAEGLKTLKYPSTTDIQKFTIPLLANGHDVIGLAPTGSGKTVAFA 148

Query: 96  WMMLWLISTRPGMS--IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
              L  +   P  +  ++ +A +   ++ T      K    L        ++    P   
Sbjct: 149 VPALAGLKPNPDGTPSVLVLAPTRELVQQTT-----KVFQNLGCGQVRVCEAYGGAPRDL 203

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS 210
            A  L       +    +       +           +   +  DEA    D+  + 
Sbjct: 204 QARHLR------NGCDALVACPGRLKDFLDGGDVSIRNLSFLVFDEADRLLDMGFQV 254


>gi|145220105|ref|YP_001130814.1| CRISPR-associated helicase Cas3 family protein protein
           [Prosthecochloris vibrioformis DSM 265]
 gi|145206269|gb|ABP37312.1| CRISPR-associated helicase, Cas3 family [Chlorobium phaeovibrioides
           DSM 265]
          Length = 665

 Score = 41.5 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 42/150 (28%), Gaps = 7/150 (4%)

Query: 68  SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT--LW 125
            N  +  P +F   +    G GKT  +    L          +I      + ++ T  ++
Sbjct: 165 KNKASLAPGVFSLTV--PTGGGKTLSSMAFALEHAIKYKKKRVIIAIPYTSIIEQTAAIF 222

Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185
            ++    ++L H    +    +              +   +     +          +  
Sbjct: 223 RKIFGSDAVLEHHSNLDPDRETQSARLSSENWDAPIIVTTNVQLFESLFAAR---SSSCR 279

Query: 186 GPHNTHGMAVFNDEASGTPDIINKSILGFF 215
             HN     +  DEA   P    + IL   
Sbjct: 280 KLHNLVNSVIILDEAQTLPTGFLQPILSSL 309


>gi|227875061|ref|ZP_03993206.1| helicase [Mobiluncus mulieris ATCC 35243]
 gi|304390304|ref|ZP_07372257.1| SNF2 domain protein [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|306817348|ref|ZP_07451093.1| SNF2 domain protein [Mobiluncus mulieris ATCC 35239]
 gi|227844339|gb|EEJ54503.1| helicase [Mobiluncus mulieris ATCC 35243]
 gi|304326060|gb|EFL93305.1| SNF2 domain protein [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|304649789|gb|EFM47069.1| SNF2 domain protein [Mobiluncus mulieris ATCC 35239]
          Length = 457

 Score = 41.5 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 61/193 (31%), Gaps = 28/193 (14%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM- 108
           QPH +Q +  + +  H  +            AI  G G+GK+ +     +W +       
Sbjct: 4   QPHNYQRQATQFIIDHHEA------------AIFLGMGLGKSVIT-LTAIWQLMLDYFTI 50

Query: 109 -SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
             ++ IA      ++T  AE++KW  +        + +     +   A  +   +  ++ 
Sbjct: 51  HRVLVIAP-LRVARDTWPAEIAKWDHLDGLTVAVAVGTKQDRLNALAASAMVTIINRENI 109

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
            + I+                +     V  DE S   +   K            + W+  
Sbjct: 110 PWLIS------------QLGGSWPFDMVVIDELSSFKNHRAKRFTALVKMRPHVKRWVGL 157

Query: 228 SNTRRLNGWFYDI 240
           + T   NG     
Sbjct: 158 TGTPTSNGLMDVW 170


>gi|160933317|ref|ZP_02080705.1| hypothetical protein CLOLEP_02162 [Clostridium leptum DSM 753]
 gi|156867194|gb|EDO60566.1| hypothetical protein CLOLEP_02162 [Clostridium leptum DSM 753]
          Length = 321

 Score = 41.5 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 56/205 (27%), Gaps = 27/205 (13%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKT L   M +     R    II    +             +    L        Q +
Sbjct: 136 GTGKTYLAVAMAVTAFRAREVNRIILTRPA------------VEAGEKLGFLPGDLQQKV 183

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
             +    Y  L    M     +     R   E  P  ++         +  DEA  T   
Sbjct: 184 DPYLRPLYDALF--DMLGTDTYQKYVERGNIEVAPLAYMRGRTLDDSFIILDEAQNTTPE 241

Query: 207 INKSILGFFTELNPNRFWIMTSN------TRRLNGWFYDIFNIPL--EDWKRYQIDTRTV 258
             K      T L  N   ++T +               D+  I    +D  + + + R V
Sbjct: 242 QMKMF---LTRLGFNSKMVITGDITQIDLPDGKRSGLRDVLKILKNVDDIAQIRFNERDV 298

Query: 259 EGIDSGFHEGIISRYGLDSDVARIE 283
             +     + II  Y  + +  R  
Sbjct: 299 --VRHKLVQEIIKAYEKNEEGKRNR 321


>gi|261420309|ref|YP_003253991.1| type III restriction protein res subunit [Geobacillus sp. Y412MC61]
 gi|319767119|ref|YP_004132620.1| type III restriction protein res subunit [Geobacillus sp. Y412MC52]
 gi|261376766|gb|ACX79509.1| type III restriction protein res subunit [Geobacillus sp. Y412MC61]
 gi|317111985|gb|ADU94477.1| type III restriction protein res subunit [Geobacillus sp. Y412MC52]
          Length = 815

 Score = 41.5 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 49/186 (26%), Gaps = 36/186 (19%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           QP   Q+E +E ++       +       K  +    G+GKT L A         R    
Sbjct: 223 QPRFAQVEALERLEAAYEEGYD-------KAMVVMATGLGKTYLAA------FFARRFSR 269

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           ++ IA+ E  L+                    +     + P              ++   
Sbjct: 270 VLFIAHREEILRQ------------------AKQSFERVIPDRTAGLYDGNQKEGNADMV 311

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
             +  T S ++              +  DE         + +        P     +T+ 
Sbjct: 312 FASIFTLSMKKH--LHSFRPDAFDLIIVDEFHHAAARSYERV---LRYFQPKFLLGITAT 366

Query: 230 TRRLNG 235
             R + 
Sbjct: 367 PDRSDN 372


>gi|199598961|ref|ZP_03212370.1| hypothetical protein LRH_06891 [Lactobacillus rhamnosus HN001]
 gi|199590161|gb|EDY98258.1| hypothetical protein LRH_06891 [Lactobacillus rhamnosus HN001]
          Length = 570

 Score = 41.5 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 40/322 (12%), Positives = 86/322 (26%), Gaps = 60/322 (18%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFK---CAISAGRGIGKTTLNAWMMLWLISTRPG-- 107
            +Q   + ++       V+  +P I +     IS  R  GK+ L + ++L+         
Sbjct: 74  PFQKFIIGSIY----GWVDKDDPNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPA 129

Query: 108 -MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
               +  A ++ +    ++  V   L  L                          +  D 
Sbjct: 130 NKRQLYTAANDRKQAGIVFGMVKDRLRAL--------------MRKDPGIKRMVKITRDE 175

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS--GTPDIINKSILGFFTELNPNRFW 224
                   T      DT              DE +   T D+I     G     +   F 
Sbjct: 176 LVNLDDGSTIRSFSRDTG-LVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFI 234

Query: 225 IMTSNTRRLNGWFYDIFNIPL---------EDWKRYQIDTRTVEGIDSG--FHEGI---- 269
           I T+        F   +             E +  +  +   V+ +D    + +      
Sbjct: 235 ISTAGFDMNVPMFQQNYPYAKKVLSGEETAERYFAFIAEQDNVQEVDDPNSWIKSNPLLD 294

Query: 270 -----------------ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312
                             +R     +   ++    + Q   ++++  +  ++A   E  D
Sbjct: 295 VDIVHDQITDYLTTKLSQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKDAELSEKPD 354

Query: 313 DLYAPLIMGCDIAGEGGDKTVV 334
                  +G D+     D   +
Sbjct: 355 IRGKRAWIGIDVGRT-SDLFAI 375


>gi|146417440|ref|XP_001484689.1| hypothetical protein PGUG_02418 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 847

 Score = 41.5 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 35/264 (13%), Positives = 67/264 (25%), Gaps = 27/264 (10%)

Query: 26  LSFKNFVMRFFPW-GIKGKP-LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS 83
              K  +   FP+ G    P ++   QP    ++ +       +  +           ++
Sbjct: 203 HHPK--LKDVFPYLGSLETPPVKRAPQPEGMNIKLLPFQLEGLNWLLQQEEGEFRGGILA 260

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
              G+GKT     + L  +S  P + +        Q KN +       L  +   H    
Sbjct: 261 DEMGMGKTIQTIALFLSDLSKGPNLVVGPTVA-LMQWKNEIEKHTKDGLLKVLLFHGANR 319

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
            +     S +   L   S+                         H+     V  DEA   
Sbjct: 320 ATDVKELSKYNVILTSFSVLESVFRKQNYGFKRKAGLVKEKSPLHSIEFYRVVLDEAHNI 379

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRL-----------------NGWFYDIFNIPLE 246
            D  + +           R W +T    +                  + +F        +
Sbjct: 380 KDRTSGTAKAANNLKCSKR-WCLTGTPLQNRIGEMYSLIRFMKLEPFHQYFCTKCECSSD 438

Query: 247 DWKRYQIDTRT----VEGIDSGFH 266
           +WK               + + F 
Sbjct: 439 EWKFLDWRHCDICGHSPMVHTNFF 462


>gi|153835022|ref|ZP_01987689.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01]
 gi|148868543|gb|EDL67640.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01]
          Length = 430

 Score = 41.5 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 74/272 (27%), Gaps = 38/272 (13%)

Query: 87  GIGKTTLNAWMMLWLIST------RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           G GKT   +  M+  +        R     + +A +          E+++ ++    + +
Sbjct: 48  GTGKTAAFSLPMIQQLLESGRSASRKTARALIMAPT---------RELAEQIADNI-KAY 97

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
            +   LS+       ++  Q   ++     +       E           +   +  DEA
Sbjct: 98  TKYTDLSVAAIFGGRKMSSQVTALEGGVDILVATPGRLEEHIEQGNVSVANIEFLVFDEA 157

Query: 201 SGTPDIIN--KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
               D+                 +  + ++ T               +  +  + +T   
Sbjct: 158 DRILDMGFIHAVRKIMMDVDTDPQIMMFSATTSSQLNLLAKDILRKPKRIEVERANTTAQ 217

Query: 259 EG------IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY----------- 301
                   +D      ++S      +  ++ +   + +   +                  
Sbjct: 218 TIAHVLYPVDQERKTELLSELIGRKNWKQVLVFVNYKETANDVVKELKLDGIKAVVCHGD 277

Query: 302 -IEEAMSREAID--DLYAPLIMGCDIAGEGGD 330
             + A  R   +     A +++  D+A  G D
Sbjct: 278 RAQSARRRALEEFKTGKARVMVATDVAARGLD 309


>gi|29829470|ref|NP_824104.1| DNA repair helicase [Streptomyces avermitilis MA-4680]
 gi|29606578|dbj|BAC70639.1| putative DNA repair helicase [Streptomyces avermitilis MA-4680]
          Length = 714

 Score = 41.5 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 59/194 (30%), Gaps = 16/194 (8%)

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK--TTLNAWMMLWLISTR--PGMSIICIA 114
           +  V  +    V        +  +    G GK  T L+A   +  +  +    +  + IA
Sbjct: 260 LLEVRDYQKRAVTQWFAQRGRGILRMATGTGKTLTALSAAAQVTKMLHKVGEPLLTVVIA 319

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
             +  +    WA+  +W  + P R     +S +         L   ++        IT  
Sbjct: 320 PYQHLVDQ--WAKDIEWFGVHPLR---AYESTAAWFPHASQLLDALALHTTRGGVIITTN 374

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
               E     +       + +  DEA        +S L      +      +++   R  
Sbjct: 375 KTFGETAFQSILQRYRGQLLLIADEAHNLGARHIRSKLP----DSAQFRLGLSATPER-- 428

Query: 235 GWFYDIFNIPLEDW 248
            WF D     L D+
Sbjct: 429 -WFDDEGTAALTDY 441


>gi|325182937|emb|CCA17392.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
 gi|325189887|emb|CCA24367.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 1653

 Score = 41.5 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 44/124 (35%), Gaps = 12/124 (9%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              +S   G+GKT + + +M       P   +I +A ++          V++ +      
Sbjct: 177 NTLVSLPTGLGKTLIASVVMHNFYRWFPNGKVIFLAPTK--------PLVTQQIQACYEI 228

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT-FVGPHNTHGMAVFN 197
           +   +   +    G   +   +      + +  T ++++ +  +  F   H    + +  
Sbjct: 229 NGLPLDQTAE-IQGNVPKESRRKWWKQKRIFFCTPQSFTNDVKEGIFKDAH--QIVCLII 285

Query: 198 DEAS 201
           DEA 
Sbjct: 286 DEAH 289


>gi|303257923|ref|ZP_07343932.1| putative helicase [Burkholderiales bacterium 1_1_47]
 gi|302859266|gb|EFL82348.1| putative helicase [Burkholderiales bacterium 1_1_47]
          Length = 1003

 Score = 41.5 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 56/185 (30%), Gaps = 20/185 (10%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P++ Q  F++ +D   HS  N       +  + +  G GKT   A+ +  L+  +     
Sbjct: 230 PNKMQESFIKKLDEIYHSGQN-------RALLISATGTGKTYAAAFSVKHLMEQKRP--- 279

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
               + +  +K  L+    + +++     +  +    +         L      D +   
Sbjct: 280 ---EHHKRPIKKVLFVVHREQIAIQAKNSFARV----IGSEHGQTYGLLSGNHKDKECTF 332

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
           +     +                 +  DEA  +       I        P  +  MT+  
Sbjct: 333 LFSTIQTLSLDRILKDFAPDAFDFIIIDEAHRSGANSYDKI---MAHFQPEFWLGMTATP 389

Query: 231 RRLNG 235
            R + 
Sbjct: 390 ERTDD 394


>gi|163816458|ref|ZP_02207822.1| hypothetical protein COPEUT_02647 [Coprococcus eutactus ATCC 27759]
 gi|158448158|gb|EDP25153.1| hypothetical protein COPEUT_02647 [Coprococcus eutactus ATCC 27759]
          Length = 713

 Score = 41.5 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 53/182 (29%), Gaps = 9/182 (4%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +  HC +   N     F+  +    G GKT  +    L          +I +    + +
Sbjct: 216 EILKHCLNEGQNEKGY-FRLTV--PTGGGKTIASLAFALKHAVENDMDRVIYVIPYTSII 272

Query: 121 KN--TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
           +    ++ ++    ++L +    +            A        + + +       +S 
Sbjct: 273 EQNAQVFRDILGEQNVLENHCNVDYDGREDFEPMQLASENWDKPIVVTTNVQFFESLFS- 331

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE---LNPNRFWIMTSNTRRLNG 235
            +       HN     +  DEA   P    K  +   +E      +   + T+    L  
Sbjct: 332 NKSSKCRKLHNIANSVIIFDEAQMLPTDYLKPCIYMISELVIRYRSSIVLCTATQPALGS 391

Query: 236 WF 237
            F
Sbjct: 392 LF 393


>gi|303389640|ref|XP_003073052.1| pre-mRNA splicing helicase [Encephalitozoon intestinalis ATCC
           50506]
 gi|303302196|gb|ADM11692.1| pre-mRNA splicing helicase [Encephalitozoon intestinalis ATCC
           50506]
          Length = 1480

 Score = 41.5 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 54/199 (27%), Gaps = 18/199 (9%)

Query: 32  VMRFFPWGIKGKPLEHFSQPHRWQLEFMEA-VDVHCHSNVNNS-NPTIFKCAISAGRGIG 89
               F  G K         P   +  F    V  +  S V +S         + A  G G
Sbjct: 218 AKIVFVPGQKVDVEFDGEPPENVKRLFGRNFVFNYVQSVVQSSVLKGDGNVLVCAPTGSG 277

Query: 90  KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLH 149
           KT +    +L  I  R  + +  IA  +   +        K +  +  +H   +   +  
Sbjct: 278 KTVIGMMCILKEIEARKKVRVGYIAPMKALAREIC-----KTIGKVFSKHEVSVVEHTSD 332

Query: 150 PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209
               Y  L +  + + +          ++ R              V  DE     D    
Sbjct: 333 IYSGYRRLEQAGVIVSTPEKFDILTRNTDLR-----------FDLVIIDEIHIIGDSRGA 381

Query: 210 SILGFFTELNPNRFWIMTS 228
           +I      +   +   +  
Sbjct: 382 TIEAIVARMAMQKKCRIVG 400


>gi|290473109|ref|YP_003465970.1| HsdR protein [Xenorhabdus bovienii SS-2004]
 gi|289172403|emb|CBJ79170.1| HsdR protein [Xenorhabdus bovienii SS-2004]
          Length = 1029

 Score = 41.5 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 19/188 (10%), Positives = 49/188 (26%), Gaps = 5/188 (2%)

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICI--ANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           +G GK+    W+  W+    P   ++ +            ++  V + +           
Sbjct: 277 QGSGKSLTMVWLAKWIRENVPNSRVLIVTDRTELDAQIEKVFTGVEENIYRTKSGADLIF 336

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
                +P    + + +     +++    T     E +            + VF DE    
Sbjct: 337 NLNRPNPWLICSLVHKFGHRSEAEDDAATDEYIKELKKSLPSDFRAKGDLFVFVDECH-- 394

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
               +  +      +     +I  + T  +         +       Y+ D    +G+  
Sbjct: 395 -RTQSGKLHDAMKSILAEAVFIGFTGTPLMKKDKKKSIEVFGSFIHTYKFDEAVSDGVIL 453

Query: 264 GFHEGIIS 271
                   
Sbjct: 454 DLRYEARD 461


>gi|330987023|gb|EGH85126.1| helicase domain-containing protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 1178

 Score = 41.5 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 60/221 (27%), Gaps = 36/221 (16%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKT +   ++  L+       I+ ++           +   +W   L  +     +  
Sbjct: 132 GAGKTIMAGLLIRELLMRSDAKRILVVSP---------GSLTEQWQDELLEKFGVRFEVF 182

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG-PHNTHGMAVFNDEASGTPD 205
           S       A           +   +  R     R + +     NT    +  DEA     
Sbjct: 183 SREKQEQCASGN-----YFEEINLLIARLDQLSRSEDYQQKLKNTEWDLIIVDEAHKLSA 237

Query: 206 IINKSI--------LGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257
               S         LG         F +MT+             N   ED++   +    
Sbjct: 238 NYFGSKVNKTKRFELGELLGSITRHFLLMTATP----------HNGKEEDFQ-IWLSLLD 286

Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIP 298
            +     F EG        SD+ R  +  +  + +     P
Sbjct: 287 GDRFYGKFREGAHKV--DVSDMMRRMVKEELLKFDGTPLFP 325


>gi|315122536|ref|YP_004063025.1| DNA packaging protein Gp2 [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495938|gb|ADR52537.1| DNA packaging protein Gp2 [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 455

 Score = 41.5 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 34/316 (10%), Positives = 69/316 (21%), Gaps = 34/316 (10%)

Query: 55  QLEFMEAVDVH---CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
           Q EF      H        +       +    AG  +GKT   A      ++       +
Sbjct: 10  QREFRRLDFYHPYEQQKLFHQLGKIARERLFMAGNQLGKTLAGAAEAAIHLTGFYPPWWL 69

Query: 112 ---CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
               +        +  +      +  L       +          +  +        +  
Sbjct: 70  GHRFVKPIVMVAGSVSYELTRDGIQRLLLGEPMSLDRQGSGMIPAHTIVNMTRRFNVAGA 129

Query: 169 YTI---------TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
           YT          T     +          +     V+ DE    P+ +     G      
Sbjct: 130 YTTVTIKHVSGGTSVLLLKAYEQGREKWQSNTVDYVWFDEEP--PEDVY--FEGLTRINA 185

Query: 220 PNRFWIMTSNT-RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278
                 +T    +  +       +    D +  ++         +     II+ Y L   
Sbjct: 186 TQGLVALTLTPLKGRSNIVEHYLSSSSPDRQVIRMTLEETPHYTAKERIRIINSYPLHER 245

Query: 279 VARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE----------G 328
            AR +     P        P    ++ +        +   I G D               
Sbjct: 246 EARTKGE---PVLGSGRIFPI-LEQDIVITSFDIPEHWSQIGGMDFGWHHPFAAVQLAWN 301

Query: 329 GDKTVVVFRRGNIIEH 344
            D  V+   +      
Sbjct: 302 RDSDVIYVVKNYRCRE 317


>gi|313668069|ref|YP_004048353.1| hypothetical protein NLA_7310 [Neisseria lactamica ST-640]
 gi|313005531|emb|CBN86967.1| hypothetical protein NLA_7310 [Neisseria lactamica 020-06]
          Length = 761

 Score = 41.5 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 47/175 (26%), Gaps = 14/175 (8%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
             G GKT  +    L          +I +    + ++    AE  K    L  +   E  
Sbjct: 267 PTGGGKTFTSMAFALEHAKQHGMRRVIYVIPFTSIIEQNA-AEFRKAFGELGEQAVLEHH 325

Query: 145 SLSLHPS-GWYAELLEQSMGIDSKHYTITCRTYS-------EERPDTFVGPHNTHGMAVF 196
           S              +  +  ++    I   T          +R       HN  G  + 
Sbjct: 326 STFDDGKLQNEVTKDKLRLASENWDAPIVVTTAVQFFESLFADRSSRCRKLHNIAGSVII 385

Query: 197 NDEASGTPDI----INKSILGFFTELNPNRFWIMTSNTR-RLNGWFYDIFNIPLE 246
            DEA   P      I ++I       + +      +    +    FY  F    E
Sbjct: 386 LDEAQMLPLNLLLPIMQAIKELAQNYHCSVVMCTATQPAVQAENGFYRGFENVRE 440


>gi|256822194|ref|YP_003146157.1| DEAD/DEAH box helicase domain-containing protein [Kangiella
           koreensis DSM 16069]
 gi|256795733|gb|ACV26389.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
           16069]
          Length = 458

 Score = 41.5 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/225 (8%), Positives = 52/225 (23%), Gaps = 14/225 (6%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
           E  S   +   +    V                   +SA  G GKT      ++  +   
Sbjct: 9   ELHSGLQKAFQKLKFEVPSEVQEKAIEPILDGHDVMVSAETGSGKTAAFLLPIIHNLLEN 68

Query: 106 PGM----SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
           P       ++ +A +    +      + K    L      +   +        A+   Q 
Sbjct: 69  PSRHTSTRVLILAPTRELARQ-----IDKHARDL-----TQFTQIKTGLIIGGADYKYQQ 118

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221
                    I              G        +  DEA    ++     +        +
Sbjct: 119 AIFRDNPEIIIATPGRMLEHCEKQGADLNDLEYLVIDEADKMFEMGFTDDVQAIAGFCKS 178

Query: 222 RFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFH 266
               +  +          + +  +++ +   +++   +       
Sbjct: 179 DRQTLLFSATLKTKGIKHLTDYLMDEPQAIVLNSFEAKNDSIEQF 223


>gi|328789292|ref|XP_001120427.2| PREDICTED: probable ATP-dependent RNA helicase DDX52-like, partial
           [Apis mellifera]
          Length = 512

 Score = 41.5 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/204 (11%), Positives = 51/204 (25%), Gaps = 28/204 (13%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS-- 103
             +  P   Q++ +  +                     A  G GKT      ++  +   
Sbjct: 95  CGYQYPTPIQMQAIPVMLQGRQ------------ILACAPTGSGKTAAFLLPIIHHLGGP 142

Query: 104 TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
            + G   I ++ +    K T      +    L   + F++  +S           + S  
Sbjct: 143 EKKGFRAIILSPTRELAKQTY-----RECLRLSEGYNFKIHIISKINQALNKYGPKSSQK 197

Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-------IINKSILGFFT 216
            D      T +                +   +  DE     +          + I    T
Sbjct: 198 FD--ILITTPKRIIYLLNQDPPAISFNNVEWLIVDEVDKLFEDGIRCFRDQFEKISKSCT 255

Query: 217 ELNPNRFWIMTSNTRRLNGWFYDI 240
               ++     +NT  +  W    
Sbjct: 256 SEKLHKAMFSATNTPIVTKWCRRN 279


>gi|298711631|emb|CBJ32687.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1053

 Score = 41.5 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 50/160 (31%), Gaps = 15/160 (9%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q   +             S       A++A RG GK+     + L         +I   A
Sbjct: 261 QARALLTFMEAISEKTLRST-----VALTASRGRGKSAAI-GLCLAGAIAYGYSNIFVTA 314

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            S   L    +  V K   +L      + + +      +   ++  ++  D +      +
Sbjct: 315 PSPENLSTV-FEFVLKGFDLLHFSEHLDYEVIQSTNPAFNRAVVRINVFKDHRQTIQYIQ 373

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF 214
                  D+    H      +  DEA+  P  + KS+LG 
Sbjct: 374 P-----HDSEKLSHCE---LLAVDEAAAIPLPLVKSLLGP 405


>gi|241956218|ref|XP_002420829.1| DNA replication ATP-dependent helicase, putative [Candida
            dubliniensis CD36]
 gi|223644172|emb|CAX40981.1| DNA replication ATP-dependent helicase, putative [Candida
            dubliniensis CD36]
          Length = 1420

 Score = 41.5 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/141 (9%), Positives = 37/141 (26%), Gaps = 3/141 (2%)

Query: 64   VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
                +     +   +   +    G GKTT+ A ++   +      S++  + + + + N 
Sbjct: 965  DQIAALNKAFSANDYSLIVGMP-GTGKTTVIAQLI--KVLVSQKKSVLLTSYTNSAVDNI 1021

Query: 124  LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
            L       +  L   +   +          + + +       + +        +      
Sbjct: 1022 LLKLKELDIDFLRLGYPQRVHKDIKDYIPGFKDSITTYEQYVNTYMRPKVIATTCLNITD 1081

Query: 184  FVGPHNTHGMAVFNDEASGTP 204
                          DEAS   
Sbjct: 1082 TCFNLRRTFDYCIVDEASQIT 1102


>gi|254450245|ref|ZP_05063682.1| helicase domain protein [Octadecabacter antarcticus 238]
 gi|198264651|gb|EDY88921.1| helicase domain protein [Octadecabacter antarcticus 238]
          Length = 937

 Score = 41.5 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/212 (9%), Positives = 60/212 (28%), Gaps = 14/212 (6%)

Query: 87  GIGKTTLNAWMMLWLISTRP-GMSIICIANS-----ETQLKNTLWAEVSKWLSMLPHRHW 140
           G+GKT + A ++L  +  R     I+ +A               + E  +++       +
Sbjct: 122 GLGKT-IEAGLILRELKLRGMAKRILVVAPKGLVRQWQAEMRLHFGENFQFIEPSEFSAY 180

Query: 141 FEMQSLSLHPSGWYAELL--EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
            + +    +    + + +    S+         +    S    + F    +     V  D
Sbjct: 181 RQFRDDEENLWRLHDQAICSLDSVKPLEGRRGWSAEQLSTYNRERFEDLISASWDLVIID 240

Query: 199 EASGTPDIINKSIL---GFFTELNPNRFWIMTSNT-RRLNGWFYDIFN-IPLEDWKRYQI 253
           EA       ++      G           ++++   +     F+ +   +  + +     
Sbjct: 241 EAHRMGGSTDQVARYKLGAALAEAAPYLLLLSATPHQGKTDQFHRLMQLLDRDSFPDENS 300

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
            +           E  ++       + +  + 
Sbjct: 301 ISSDRVRPFVVRTEKRLAIDAEGKPLFKPRVT 332


>gi|162329311|ref|YP_001604365.1| putative helicase [Acidianus filamentous virus 3]
 gi|157310688|emb|CAJ31513.1| putative helicase [Acidianus filamentous virus 3]
          Length = 564

 Score = 41.5 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 47/157 (29%), Gaps = 20/157 (12%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
            I A  G GK+ ++    L ++  +    +I   NS T LK                   
Sbjct: 201 IIKAPTGSGKSIISILATLEMLKNKKNAKVIYAVNSTTLLKQ---------------FQQ 245

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN--THGMAVFND 198
           F  +               +     +         YS+++ +      +   +   +  D
Sbjct: 246 FAKKEDLNFAIVSGELNELKKEKDSNLIALSISYYYSQKKRNKHNELRDIINNADLIIID 305

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
           EA  TP     SI     +   +    +T+   R +G
Sbjct: 306 EAHHTP---ANSIKALLLDSPNSIRLGLTATPYREDG 339


>gi|119472748|ref|ZP_01614702.1| helicase [Alteromonadales bacterium TW-7]
 gi|119444773|gb|EAW26077.1| helicase [Alteromonadales bacterium TW-7]
          Length = 1070

 Score = 41.5 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 71/237 (29%), Gaps = 30/237 (12%)

Query: 1   MPRLISTDQ--KLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEF 58
           + +  ST +      +       AEC     N +      G           P   QL  
Sbjct: 288 IAKTKSTFETYWQSPDFELFRGKAECKEKLINSLNEQRGVGQSSSQFYFDITPKTHQLAI 347

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           +E +       V       FK  + A  G GKT ++A+    +    P    + +A+ E 
Sbjct: 348 LEKLS------VERGVHNRFKNLVVAATGTGKTIISAFDFKTVYDKNPNAHFLFVAHREE 401

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
            LK       S +  +L +  + E+   +  P  +                 +     + 
Sbjct: 402 ILKQA----QSAYRGVLKNNDFGELWVGNYKPQRY---------------NQLFASIQTL 442

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
                 +   + +   +  DE         ++IL  F    P     +T+   R +G
Sbjct: 443 NSQIGSLNLTHDYYDYIVIDEVHHVSAASYRAILNHFA---PTILLGLTATPERQDG 496


>gi|86605886|ref|YP_474649.1| PhoH family protein [Synechococcus sp. JA-3-3Ab]
 gi|86554428|gb|ABC99386.1| PhoH family protein [Synechococcus sp. JA-3-3Ab]
          Length = 325

 Score = 41.5 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 50/185 (27%), Gaps = 31/185 (16%)

Query: 44  PLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS 103
            L     P   Q E+++A+  H                     G GKT L A + +  + 
Sbjct: 114 ELIRPKTPR--QQEYVQAIRTHDLCFGIGPA------------GTGKTYLAAVVAITALQ 159

Query: 104 TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
            R    +I    +             +    L       ++ +  +    Y  L      
Sbjct: 160 NREYERLILTRPA------------VEAGEKLGFLPGDLVEKVDPYLRPLYDALF--EFI 205

Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
             +K   +  +   E  P  ++         +  DEA  T     K      T L     
Sbjct: 206 DPAKLPQLMAQGVIEVVPLAYMRGRTLSNAFIILDEAQNTTPEQMKMA---LTRLGFRSR 262

Query: 224 WIMTS 228
            ++T 
Sbjct: 263 MVVTG 267


>gi|70990852|ref|XP_750275.1| DNA-directed DNA polymerase theta [Aspergillus fumigatus Af293]
 gi|66847907|gb|EAL88237.1| DNA-directed DNA polymerase theta, putative [Aspergillus fumigatus
           Af293]
 gi|159130748|gb|EDP55861.1| DNA-directed DNA polymerase theta, putative [Aspergillus fumigatus
           A1163]
          Length = 940

 Score = 41.5 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 46/318 (14%), Positives = 83/318 (26%), Gaps = 54/318 (16%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ   +  +         +          +A  G GK+ +   +ML  I   P    I 
Sbjct: 141 PWQASCL--LARGLLEGERH-------LVYTAPTGGGKSLVADVLMLKRIIEHPSRKAIL 191

Query: 113 IANSETQLKNTLWAEVSKWLSML---PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           +      ++  L     KWL  +     ++  +    +     +Y    +    I    Y
Sbjct: 192 VLPYVALVQEKL-----KWLRRIVENVEKNVPDDDDEAARLKPYYQRWKKLQKSIRVTGY 246

Query: 170 TITCRTYSE-----------ERPDTFVGPHNTHGMA-----VFNDEASGTPDII------ 207
               RT +            E+ ++ +              V  DE     D        
Sbjct: 247 FGGSRTAASWADTDIAVCTIEKANSLINTAVEECSIGDLGVVVLDELHMLDDENRGYILE 306

Query: 208 NKSILGFFTELNPNRF--WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265
                    + +          SNT  L  W    +         +    R V   +   
Sbjct: 307 LMVTKLLLLQQDIQIIGMSATLSNTELLADWMNAKY---------FISTYRPVPIDEYLV 357

Query: 266 HEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYIEEAMSREA-IDDLYAPLIMGC 322
           +E  I        + +    +         +   PH  I+ +  RE       A + +  
Sbjct: 358 YENAIYPAATSRQLFQTITRLKSMKTISLTDTIPPHRMIQCSKHRELANPMTNAMVALAV 417

Query: 323 DIAGEGGDKTVVV-FRRG 339
           D A  G    V    R+G
Sbjct: 418 DTAAAGYGALVFCGSRQG 435


>gi|118382948|ref|XP_001024630.1| Type III restriction enzyme, res subunit family protein [Tetrahymena
            thermophila]
 gi|89306397|gb|EAS04385.1| Type III restriction enzyme, res subunit family protein [Tetrahymena
            thermophila SB210]
          Length = 2279

 Score = 41.5 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 45/171 (26%), Gaps = 21/171 (12%)

Query: 36   FPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTT-LN 94
            FP G         +  ++ Q + +                      + A  G GKT  + 
Sbjct: 1427 FPEGEAVLKELGITTFNKIQTQVLNQFYSQSE-----------NIFLGAPTGSGKTACII 1475

Query: 95   AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWY 154
              M+    +      +I +A     +   ++   SK    L  +              + 
Sbjct: 1476 VAMLRIFKTYYENKKVIYVAP-FESICQNMYKLFSKAFKHLGKKVAILTGQTKTDNQIFT 1534

Query: 155  AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
               +  S     +++ I  R + +          N +      DE     +
Sbjct: 1535 KYDIIIS---TPENWDINTRKWKKT-----QQIINKNIKLFIADELHMLNE 1577


>gi|116195262|ref|XP_001223443.1| hypothetical protein CHGG_04229 [Chaetomium globosum CBS 148.51]
 gi|88180142|gb|EAQ87610.1| hypothetical protein CHGG_04229 [Chaetomium globosum CBS 148.51]
          Length = 1676

 Score = 41.5 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/135 (12%), Positives = 39/135 (28%), Gaps = 16/135 (11%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS--------MLPHR 138
            G GKT     ++  L        I+  A +   + N L   + +  +        + P R
Sbjct: 1283 GTGKTETIVEIIRALQICFDKPRILVTAPTHNAVDNVLRRYIGRVSATVQASNPHLTPLR 1342

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR--------TYSEERPDTFVGPHNT 190
               E++ ++     +  + +       ++      +         ++             
Sbjct: 1343 VSTEIRKVAEDLRKYTCDAMAGQEIHANRAAMDQAKKRVKQCCIIFTTCIGAGIGLLRPE 1402

Query: 191  HGMAVFNDEASGTPD 205
                V  DEAS   +
Sbjct: 1403 VFDIVIVDEASQQTE 1417


>gi|328947484|ref|YP_004364821.1| Type I site-specific deoxyribonuclease [Treponema succinifaciens
           DSM 2489]
 gi|328447808|gb|AEB13524.1| Type I site-specific deoxyribonuclease [Treponema succinifaciens
           DSM 2489]
          Length = 850

 Score = 41.5 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 67/244 (27%), Gaps = 24/244 (9%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFS---QPHRWQL- 56
           M R    + +   E+   + +A    +    V   F   +   P    +    P  +Q  
Sbjct: 156 MARWRGVNAEKIAEVENRMEYAIDGNAKFYDVPLCFEENLMNTPFYSGADCYPPRYYQRN 215

Query: 57  ---EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST-RPGMSIIC 112
                +EA+  H             +  I+   G GKT   A+ ++W +        ++ 
Sbjct: 216 AVNRTLEAIAKHQA-----------RILIAMATGTGKTY-TAFQIVWRLIESGTKKKVLY 263

Query: 113 IANSETQLKNTL---WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           +A+    +  ++   +  + K +    +    +   +S +   +       S    +   
Sbjct: 264 LADRNNLVDQSIQQDFKPLDKVIHK-INFQKEDKSKISAYQVYFALYQQLDSTKHHNDEE 322

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
             T      E               +  DE        +          N      MT+ 
Sbjct: 323 EETEEEIENELSKYKEFFTPDFFDLIIVDECHRGSAKADSRWRKILEYFNGATQIGMTAT 382

Query: 230 TRRL 233
            +  
Sbjct: 383 PKET 386


>gi|297583090|ref|YP_003698870.1| SNF2-like protein [Bacillus selenitireducens MLS10]
 gi|297141547|gb|ADH98304.1| SNF2-related protein [Bacillus selenitireducens MLS10]
          Length = 458

 Score = 41.5 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 56/204 (27%), Gaps = 18/204 (8%)

Query: 87  GIGKTTLN-AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
           G+GKT +    +   L+ +     ++ +A      ++    E+ KW  + P R+   + +
Sbjct: 29  GLGKTVITLTALFDLLLDSFHVRKVLVVAP-LRVGRDVWPEELDKWDHLEPLRYEVAIGN 87

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
                +  +       +  ++  + I    Y                  V  DE S    
Sbjct: 88  PEERLAALHRSAPITIINRENITWLIEKSGYP------------FDFDMVVIDELSSFKS 135

Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI----PLEDWKRYQIDTRTVEGI 261
             +K         +     +  + T   NG              E   R+    R     
Sbjct: 136 HQSKRFKSMMKVRSKVTRIVGLTGTPSSNGLMDLWAEYRLLDKGERLGRFISHYRDAFFE 195

Query: 262 DSGFHEGIISRYGLDSDVARIEIL 285
               ++ +I  Y L          
Sbjct: 196 PDKRNQQVIFTYKLKPGAEEQIYE 219


>gi|154281325|ref|XP_001541475.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150411654|gb|EDN07042.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 908

 Score = 41.5 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 40/153 (26%), Gaps = 5/153 (3%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q + + +      + + + +   +     A  G GK+ +   +ML  +   P    I + 
Sbjct: 113 QRQAVSSTPGPSQNPLLSLSHQSYGLPPHAPTGGGKSLIADVLMLKRVIEDPAKRAILVL 172

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
                ++  L     KWL  +       +   +       A    Q              
Sbjct: 173 PYVALVQEKL-----KWLRRVVEGVDKNVDMPTTADEASSAPKWRQPQKSIRVTGFFGGS 227

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207
                  DT +         V  DE     D  
Sbjct: 228 KTRATWTDTDIAVSLMTWGVVVLDELHMLDDEH 260


>gi|260939694|ref|XP_002614147.1| hypothetical protein CLUG_05632 [Clavispora lusitaniae ATCC 42720]
 gi|238852041|gb|EEQ41505.1| hypothetical protein CLUG_05632 [Clavispora lusitaniae ATCC 42720]
          Length = 1006

 Score = 41.5 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 59/209 (28%), Gaps = 17/209 (8%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            A++AGRG GK+      +          +I   + S   LK  L+  V +    L +  
Sbjct: 275 VALTAGRGRGKSAALGIAIA-AAIAHGYSNIFVTSPSPENLKT-LFEFVFRGFDALGYAE 332

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +  ++      +   ++   +    +                           V  DE
Sbjct: 333 HADYDAVQSTNPSFNKAVVRVDVKRSHRQTVQYIAPTDHHLLGQAE--------LVIVDE 384

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
           A+  P  + + +LG +       F   T N     G    +  I     K  Q D+    
Sbjct: 385 AAAIPLPVVRRLLGPYL-----VFMASTINGYEGTGRSLSLKLIQQLREKSAQADSSDTG 439

Query: 260 GIDSGFHEG--IISRYGLDSDVARIEILG 286
                      I    G   +    ++L 
Sbjct: 440 RTLREVVLDEPIRYAPGDPVEKWLNKLLC 468


>gi|261856214|ref|YP_003263497.1| P-type conjugative transfer ATPase TrbB [Halothiobacillus
           neapolitanus c2]
 gi|261836683|gb|ACX96450.1| P-type conjugative transfer ATPase TrbB [Halothiobacillus
           neapolitanus c2]
          Length = 346

 Score = 41.5 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 49/168 (29%), Gaps = 15/168 (8%)

Query: 32  VMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF--------KCAIS 83
           V     +  +G   EH ++PH +    + ++  H    +N +  T             + 
Sbjct: 117 VFTLADYIERGILAEHSAEPHDFLSPIVSSMQSHAADWLNLALSTRLESAIREKMNILVV 176

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
            G G GKTTL   ++  L    P   I+ I ++         A + +    +P       
Sbjct: 177 GGTGSGKTTLANALLHSLSEQCPHDRIVAIEDTMELQVRVENAVLLRASEQVPMSRLLRA 236

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
                       E+                ++++   P      H   
Sbjct: 237 TMRLRPDRIIVGEV-------RGGEAYTLLKSWNSGHPGGLATIHANS 277


>gi|145475913|ref|XP_001423979.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124391041|emb|CAK56581.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1079

 Score = 41.5 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 41/334 (12%), Positives = 92/334 (27%), Gaps = 45/334 (13%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + ++ S D+++++ + +     + +   K F    F +  +   LE        QL   +
Sbjct: 237 IAKVESKDEEVDESILDADKCLKVLKKSKQF---PFLFEAEDSLLEQQPFLLNGQLRIYQ 293

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKT--------TLNAWMMLWLISTRPGMSIIC 112
            V VH  +++   +       ++   G+GKT         L A   +W     P + I+ 
Sbjct: 294 LVGVHWMASL---HQQQMNGILADEMGLGKTIQTIALLAYLAANKQIWG----PHLVIVP 346

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            +            E  +W        +F            +++L               
Sbjct: 347 TSILMN-----WEIEFKRWCPAFKIMTYFGSPKERKLKRQGWSQLNS----------FHV 391

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232
           C T  +                +  DEA    +             N     ++T     
Sbjct: 392 CITSYKIVIQDSKVFKRKKWYYMILDEAQHIKN-FKSQRWQVLLNFNTRSRLLLTGTP-- 448

Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292
           L     +I+++                     +   I      +  ++      +  +Q 
Sbjct: 449 LQNDLGEIWSLL----HFLMPSIFDSHQDFLQWFMSIEKAISENKTISE-----EVLRQL 499

Query: 293 VNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAG 326
            +   P          E        +I+ CD++ 
Sbjct: 500 HDILRPFVLRRLKKDVEKQLPEKREVIVKCDLSR 533


>gi|255011290|ref|ZP_05283416.1| putative ATPase [Bacteroides fragilis 3_1_12]
 gi|313149101|ref|ZP_07811294.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137868|gb|EFR55228.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 375

 Score = 41.5 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/257 (9%), Positives = 60/257 (23%), Gaps = 30/257 (11%)

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126
              +     +     + + R  GK++L    M  L+     + +  I     + ++  + 
Sbjct: 23  RKQLKELLGSGINVMLISPRRWGKSSLVKVAMDELMHEDKQVRVCYIDAFSIKTESEFYR 82

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
             ++ +         +      H           ++             +  E  D    
Sbjct: 83  IFAREVIACAASTLEKRLEDVRH--FLKTVSPSITLKSTPTDTMSFDLKFELEERDVMEI 140

Query: 187 PHNTH--------GMAVFNDEASGTPDII-NKSILGFFTE-------------LNPNRFW 224
                         + V  DE      +   + + G                  +     
Sbjct: 141 LKLPEKIAIAKSIRLIVCIDEFQQLAQLSGYRDLEGKMRSVWQKQQQVSYCFYGSKRHMM 200

Query: 225 IMT----SNTRRLNGWFYDIFNIPLEDWKRYQIDT--RTVEGIDSGFHEGIISRYGLDSD 278
           +      SN     G    +  I  E+W  + ++   RT + I     E +       S 
Sbjct: 201 LDIFNNSSNPFYRFGQVLFLQKIKKEEWVPFIVNAFKRTNKEISKEQAEQLCDIVKCHSW 260

Query: 279 VARIEILGQFPQQEVNN 295
             +      +       
Sbjct: 261 YLQQLCYFVWSGTSDKV 277


>gi|134101555|ref|YP_001107216.1| ATPase [Saccharopolyspora erythraea NRRL 2338]
 gi|291008163|ref|ZP_06566136.1| ATPase [Saccharopolyspora erythraea NRRL 2338]
 gi|133914178|emb|CAM04291.1| ATPase [Saccharopolyspora erythraea NRRL 2338]
          Length = 1118

 Score = 41.5 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 37/124 (29%), Gaps = 7/124 (5%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW-LSMLPHR 138
            A+    G GKT L   ++  L+  R G ++   +NS   ++N L A +     +    R
Sbjct: 743 LAVQGPPGAGKTYLAGKLIAHLV--RSGRTVGVTSNSHKAVENVLSAALGNAPSAACAKR 800

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                              L +     +  + +    ++                 +  D
Sbjct: 801 PRRAPDPALPWEQPKTNNALAKWRDEHNDGHLVGGTAWTFANA----AVREEPFDVLVID 856

Query: 199 EASG 202
           EA  
Sbjct: 857 EAGQ 860


>gi|145488703|ref|XP_001430355.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124397452|emb|CAK62957.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1100

 Score = 41.5 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 41/334 (12%), Positives = 92/334 (27%), Gaps = 45/334 (13%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
           + ++ S D+++++ + +     + +   K F    F +  +   LE        QL   +
Sbjct: 237 IAKVESKDEEVDESILDADKCLKVLKKSKQF---PFLFEAEDSLLEQQPFLLNGQLRIYQ 293

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKT--------TLNAWMMLWLISTRPGMSIIC 112
            V VH  +++   +       ++   G+GKT         L A   +W     P + I+ 
Sbjct: 294 LVGVHWMASL---HQQQMNGILADEMGLGKTIQTIALLAYLAANKQIWG----PHLVIVP 346

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            +            E  +W        +F            +++L               
Sbjct: 347 TSILMN-----WEIEFKRWCPAFKIMTYFGSPKERKLKRQGWSQLNS----------FHV 391

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232
           C T  +                +  DEA    +             N     ++T     
Sbjct: 392 CITSYKIVIQDSKVFKRKKWYYMILDEAQHIKN-FKSQRWQVLLNFNTRSRLLLTGTP-- 448

Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292
           L     +I+++                     +   I      +  ++      +  +Q 
Sbjct: 449 LQNDLGEIWSLL----HFLMPSIFDSHQDFLQWFMSIEKAIQENKTISE-----EVLRQL 499

Query: 293 VNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAG 326
            +   P          E        +I+ CD++ 
Sbjct: 500 HDILRPFVLRRLKKDVEKQLPEKREIIVKCDLSR 533


>gi|66046145|ref|YP_235986.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae pv. syringae
            B728a]
 gi|63256852|gb|AAY37948.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae pv. syringae
            B728a]
          Length = 1473

 Score = 41.5 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 38/314 (12%), Positives = 86/314 (27%), Gaps = 39/314 (12%)

Query: 31   FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
            F+ R+F    +   L        W    +E +       + + +  + +  I AG G GK
Sbjct: 831  FIRRYFVDREEVLKLATSE--ESW-RSIVEKLSA-AQRIIVSDDDDVNRL-ILAGPGSGK 885

Query: 91   TTLNAWMMLWLISTRP-GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM---QSL 146
            T +    + +L+  R      I          N    E+ + L  L     F +      
Sbjct: 886  TRVIVHRIAYLLRVRRVPARCIVALTFNRHAAN----EIKQRLIKLVGADAFGVNVMTYH 941

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCR----TYSEERPDTFVGPH---NTHGMAVFNDE 199
             +                + +   +          + + +               +  DE
Sbjct: 942  RMAMRLTGTRFERGETLEEGRLAQVMGEAVELLEGKRQVEGEDDLREQLMRGYRYILVDE 1001

Query: 200  ASGTPDIIN---KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256
                 D+      ++ G  +E       +        +   Y   +      +R++ +  
Sbjct: 1002 YQDIDDLQYRLVSALAGRKSEEEGRLCILAVG---DDDQNIYAWRDTNNRYIERFRDEYS 1058

Query: 257  TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE-VNNFIPHNYIEEAMSREAIDDLY 315
              +      +             A   ++G+ P +   ++ I  + +  AM +    +  
Sbjct: 1059 ATKNYLVDNYRSSGRIID-----AANRVIGRNPDRLKKDHPIQIDTVRRAMPKGGDWET- 1112

Query: 316  APLIMGCDIAGEGG 329
                   DI  EG 
Sbjct: 1113 ------LDIEREGR 1120


>gi|317470487|ref|ZP_07929875.1| type III restriction enzyme [Anaerostipes sp. 3_2_56FAA]
 gi|316902002|gb|EFV23928.1| type III restriction enzyme [Anaerostipes sp. 3_2_56FAA]
          Length = 251

 Score = 41.5 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 55/188 (29%), Gaps = 23/188 (12%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q   ++  D +             K  I A  G GKTTL        +  R G   +
Sbjct: 15  RPYQERILDRADTYLKDG---------KIHIVAPPGSGKTTLG-----IELIRRLGRPCL 60

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            ++ S   ++      + +       +    + S  +H       +  Q++    +  + 
Sbjct: 61  ILSPS-AVIRQQW---LERVKEAFIQKDDQSLLSDDIHAPALITSVTYQALHFGMEQISG 116

Query: 172 TCRTYSEERPDT-----FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
               +  E+ D+                +  DE         KS+  F  ++       +
Sbjct: 117 PKSVFEAEQEDSKVFNLINAVKAAEIGTICLDECHHLRSEWWKSLEKFMMKMENVCVVSL 176

Query: 227 TSNTRRLN 234
           T+     +
Sbjct: 177 TATPPYDS 184


>gi|162447941|ref|YP_001621073.1| putative DNA/RNA helicase [Acholeplasma laidlawii PG-8A]
 gi|161986048|gb|ABX81697.1| putative DNA/RNA helicase [Acholeplasma laidlawii PG-8A]
          Length = 986

 Score = 41.5 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 55/185 (29%), Gaps = 34/185 (18%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P+  Q   +E ++   +S  N       K  I A  G GKT L+A    + +       +
Sbjct: 236 PNEMQEMALEGLNNIRNSGGN-------KALIIAATGTGKTYLSA----FDVFQLRPKKV 284

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + + +    L++ L                              +         D +   
Sbjct: 285 LFVVHRGKILRDAL--------------------RTFKTIMPEVSMGEFVGSKKDLESDY 324

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
           +     +  + D       ++   +  DEA  +     + I  +FT   P     MT+  
Sbjct: 325 LFASVQTISKIDNLNLFDPSYFDYIIIDEAHRSAADSYQRITSYFT---PKFLLGMTATP 381

Query: 231 RRLNG 235
            R + 
Sbjct: 382 ERTDS 386


>gi|309803522|ref|ZP_07697615.1| type III restriction enzyme, res subunit [Lactobacillus iners
           LactinV 11V1-d]
 gi|308164406|gb|EFO66660.1| type III restriction enzyme, res subunit [Lactobacillus iners
           LactinV 11V1-d]
          Length = 879

 Score = 41.5 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 59/186 (31%), Gaps = 16/186 (8%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q E  +    +  ++    N  I      A  G GKT + A ++L+L +      + 
Sbjct: 37  REYQKEAFQYFVTYFENDGLRKNKQIHTLFHMA-TGAGKTVMMAGLILYLYTKGYRKFLF 95

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +  +     N L      +L+ L  ++ F  +   L       ++   S         +
Sbjct: 96  FVNQT-----NILKKTEENFLNTLSSKYLFADELSYLGMKIKVKKVDRFSDIPLDDDIEL 150

Query: 172 TCRTYSEERPDTFVGPHN--------THGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
              T  +   D +    N           + + +DE+        K      TE +  + 
Sbjct: 151 LFTTTQKLHMDMWDAKENAPTCADFENDKIVLISDESHHINSNTKK--KKTSTEEDDEKS 208

Query: 224 WIMTSN 229
           W  T N
Sbjct: 209 WEYTVN 214


>gi|302812373|ref|XP_002987874.1| hypothetical protein SELMODRAFT_447130 [Selaginella moellendorffii]
 gi|300144493|gb|EFJ11177.1| hypothetical protein SELMODRAFT_447130 [Selaginella moellendorffii]
          Length = 483

 Score = 41.5 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 56/212 (26%), Gaps = 27/212 (12%)

Query: 2   PRLISTDQKLEQELHEMLMHAE-CVLSFKNF--VMRFFPWGIKGKPLEHFSQPHRWQLEF 58
           P+    + ++E ++ + L+       S K F  +    P          F +P + Q E 
Sbjct: 53  PKPEKLNDEVETKIEKELVEGNSLYTSAKTFEELKISEPLLRGIYSEMKFERPSKIQAET 112

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN--AWMMLWLISTRPGMSIICIANS 116
           +  +           NP        A  G GKTT      +     S       +C+  +
Sbjct: 113 LPLIM----------NPPHRNLVAQAHNGSGKTTCFVLGMLSRVNTSLHEPQ-ALCVCPT 161

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
                           +            ++        E ++ S+        I     
Sbjct: 162 RELA----------LQNQAVLERMARFTQITSTCIIPPTENIKSSLRGHIHDQVIFGTPG 211

Query: 177 SEERPD-TFVGPHNTHGMAVFNDEASGTPDII 207
           S ER           H   +  DEA    D  
Sbjct: 212 SLERAILNDRNLDVQHLNVLVFDEADHMLDQN 243


>gi|260789510|ref|XP_002589789.1| hypothetical protein BRAFLDRAFT_90470 [Branchiostoma floridae]
 gi|229274972|gb|EEN45800.1| hypothetical protein BRAFLDRAFT_90470 [Branchiostoma floridae]
          Length = 987

 Score = 41.5 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 42/144 (29%), Gaps = 8/144 (5%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G+GKT      + +L+        + I  S T   +    E+++W   L    ++  Q  
Sbjct: 529 GLGKTAQAISFLAYLLEQGDDGPHLIIVPSSTL--DNWVRELAQWCPDLKVLIYYGSQMD 586

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                    E +E    + + +             +  V  H         DE     ++
Sbjct: 587 RQAMRDDILEGVEDFHVLVTTYQCCVGSATDRTLFNKKVAFH-----YAILDEGHMLKNM 641

Query: 207 INKSILGFFTELNPNRFWIMTSNT 230
             +         +  R  ++T   
Sbjct: 642 QTQRYQQLLRIRSERRL-LLTGTP 664


>gi|328715040|ref|XP_001943598.2| PREDICTED: putative U5 small nuclear ribonucleoprotein 200 kDa
            helicase-like isoform 1 [Acyrthosiphon pisum]
          Length = 2144

 Score = 41.5 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 49/221 (22%), Gaps = 28/221 (12%)

Query: 46   EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
            E F Q +  Q +   AV                   I A  G GKT +  + +  L+S  
Sbjct: 1324 ERFHQFNPIQTQVFNAVYNSDE-----------NVFIGAPTGSGKTAIAEFALYRLLSQN 1372

Query: 106  PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
            P    + +   E+Q +       S W         F +               +  +   
Sbjct: 1373 PDHRCVYLVAKESQAELIY----SSWH------VIFGIGLARKVVLLTGEIGTDLKLLAK 1422

Query: 166  SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL-------GFFTEL 218
             +    T   +           +  +      DE           +           ++ 
Sbjct: 1423 GQIIVTTAEKWDVLSRRWKQRKNVQNINLFIVDELQLIGGEDGPVLEIVCSRMRYIASQT 1482

Query: 219  NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
                  +  S               P      +    R V 
Sbjct: 1483 EKQMRVVALSAPLADARDLALWLGAPATTTFNFHPSVRPVP 1523


>gi|328715038|ref|XP_003245515.1| PREDICTED: putative U5 small nuclear ribonucleoprotein 200 kDa
            helicase-like isoform 2 [Acyrthosiphon pisum]
          Length = 2148

 Score = 41.5 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 49/221 (22%), Gaps = 28/221 (12%)

Query: 46   EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
            E F Q +  Q +   AV                   I A  G GKT +  + +  L+S  
Sbjct: 1328 ERFHQFNPIQTQVFNAVYNSDE-----------NVFIGAPTGSGKTAIAEFALYRLLSQN 1376

Query: 106  PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
            P    + +   E+Q +       S W         F +               +  +   
Sbjct: 1377 PDHRCVYLVAKESQAELIY----SSWH------VIFGIGLARKVVLLTGEIGTDLKLLAK 1426

Query: 166  SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL-------GFFTEL 218
             +    T   +           +  +      DE           +           ++ 
Sbjct: 1427 GQIIVTTAEKWDVLSRRWKQRKNVQNINLFIVDELQLIGGEDGPVLEIVCSRMRYIASQT 1486

Query: 219  NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
                  +  S               P      +    R V 
Sbjct: 1487 EKQMRVVALSAPLADARDLALWLGAPATTTFNFHPSVRPVP 1527


>gi|269140417|ref|YP_003297118.1| type I site-specific deoxyribonuclease, HsdR family [Edwardsiella
           tarda EIB202]
 gi|267986078|gb|ACY85907.1| type I site-specific deoxyribonuclease, HsdR family [Edwardsiella
           tarda EIB202]
 gi|304560213|gb|ADM42877.1| Type I restriction-modification system, restriction subunit R
           [Edwardsiella tarda FL6-60]
          Length = 1031

 Score = 41.5 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 21/188 (11%), Positives = 54/188 (28%), Gaps = 5/188 (2%)

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICI--ANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           +G GK+    W+  W+    P   ++ +       +   +++  V + +           
Sbjct: 278 QGSGKSLTMVWLAKWIRENVPNSRVLIVTDRTELDEQIESVFMGVDEEIYRTSSGSDLIA 337

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
                +P    + + +     +++    T    +E +            + VF DE    
Sbjct: 338 TLNHPNPWLICSLVHKFGRRSEAEDAAATDDFITELQQSLTKTFRAKGDLFVFVDECH-- 395

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
               +  +    T + P   +I  + T  +         +       Y+ D    +G+  
Sbjct: 396 -RTQSGKLHNAMTAILPEALFIGFTGTPLMKKDKKKSVEVFGPYIHTYKFDEAVADGVVL 454

Query: 264 GFHEGIIS 271
                   
Sbjct: 455 DLRYEARD 462


>gi|225573155|ref|ZP_03781910.1| hypothetical protein RUMHYD_01346 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039484|gb|EEG49730.1| hypothetical protein RUMHYD_01346 [Blautia hydrogenotrophica DSM
           10507]
          Length = 459

 Score = 41.5 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 21/181 (11%), Positives = 47/181 (25%), Gaps = 13/181 (7%)

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GMSIICIANSETQLK 121
                +           +    G  KT  +  + L  +   P      +I    +     
Sbjct: 244 FLQEALMQPASKAPLVIVKGMAGTAKTFYSLAVGLEKLINNPSGEYRKMIVCRPNSQFDS 303

Query: 122 NTLW---AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
           +  +    E  K   ++       + +L         +  E    ++ K   I  R   +
Sbjct: 304 DIGFLPGDEQDKIYPLM----RPIVDNLEQLIDSNIEKRYENEQELNDKIEEIFDRGLIQ 359

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
                F+   +     +  DEA          + G  T        I+  +  +++    
Sbjct: 360 TEALNFIRGRSIVKTYLIIDEAQNMTPNQ---MKGIITRAGEGTKIILLGDPAQIDRPLL 416

Query: 239 D 239
           D
Sbjct: 417 D 417


>gi|254830644|ref|ZP_05235299.1| DNA segregation ATPase FtsK/SpoIIIE [Listeria monocytogenes 10403S]
          Length = 1498

 Score = 41.5 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 32/328 (9%), Positives = 76/328 (23%), Gaps = 44/328 (13%)

Query: 26   LSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAG 85
            L   NF      W    KPL+            ++  ++     +          A+ + 
Sbjct: 962  LHPVNF---EEAWKEPKKPLQATIG-------LLDQPELQAQVPLTLDLTKDGHVAVFSS 1011

Query: 86   RGIGKTTLNAWMMLWLISTRPGMS------------IICIANSETQLKNTLWAE---VSK 130
             G GK+T    +++ L                    ++ + +        +  E   + K
Sbjct: 1012 PGFGKSTFLQSLVMDLARQHNPEQLHVYLLDFGTNGLLPLVDLPHIADTMMVDEVEKIQK 1071

Query: 131  WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
            +L +  +      + LS +      +    S         +     + +           
Sbjct: 1072 FLRICLNEIKTRKKLLSQYRVANIEQYERASGKELPNIIIVLDNYDAVKDAGLGDDF--E 1129

Query: 191  HGMAVFNDEASGTPDIINKSILGF--------FTELNPNRFWIMTSNTRRLNGWFYDIFN 242
              +     E +     +   I                     +   +   ++        
Sbjct: 1130 KIITQITREGASI--GMFMIISASRHMSLRTQMATNIKQMIALYLIDKNDISSTVGRTDT 1187

Query: 243  IPLEDWKRYQIDTRTVEGIDS------GFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
               E   R  +   TV    +            I     ++ + R    G+ P+      
Sbjct: 1188 PLEEYPGRALVKLETVTTFQTTLPSQGEETIQQIEGIRNEAKLMREGWQGELPESVPMIP 1247

Query: 297  IPHNYIEEAMSRE-AIDDLYAPLIMGCD 323
                  +     E         + +G D
Sbjct: 1248 EKIKLADFCEWMETKEVVANGNIPIGVD 1275


>gi|3337256|gb|AAC34148.1| terminase subunit [Enterobacteria phage 186]
          Length = 589

 Score = 41.5 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 43/350 (12%), Positives = 86/350 (24%), Gaps = 53/350 (15%)

Query: 34  RFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93
            F    I+      F Q   +QL++  A   H   +            I   R IG T  
Sbjct: 128 FFSDEAIEKLEELFFDQSFEYQLQWYRAGLAHRIRD------------ILKSRQIGATFY 175

Query: 94  NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF--EMQSLSLHPS 151
            +   L       G + I ++ S+TQ    ++ E     + L         +   +    
Sbjct: 176 FSREALLRALKT-GHNQIFLSASKTQAY--VFREYIIQFARLVDVDLTGDPIVIGNNGAK 232

Query: 152 GWYAELLEQSMGIDSKH-------YTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGT 203
             +      +    +         +    +   +         H            A G 
Sbjct: 233 LIFLGTNSNTAQSHNGDLYVDEIFWIPNFQKLRKVASGMASQKHLRSTYFSTPSTLAHGA 292

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
               +  +         +R  I  S+     G   D        W++       + G  +
Sbjct: 293 YPFWSGELFNKGRSRIADRIEIDISHRALAGGQLCDD-----GQWRQIVTIEDALAGGCT 347

Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY-------- 315
            F    + R   D D  +   + +F   +  +  P   ++  M     +           
Sbjct: 348 LFDLDQLKRENSDED-FKNLFMCEFVD-DKASVFPFEELQRCMVDVMEEWEDFAPFADHP 405

Query: 316 ---APLIMGCDIAGEGGDKTVVVFRRGN--------IIEHIFDWSAKLIQ 354
               P+ +G D +  G   +                 +     W      
Sbjct: 406 FGSRPVWIGYDPSHTGD--SAGCVVLAPPVVSGGKFRMLERHQWKGMDFA 453


>gi|110834947|ref|YP_693806.1| ATP-dependent RNA helicase DbpA [Alcanivorax borkumensis SK2]
 gi|110648058|emb|CAL17534.1| ATP-dependent RNA helicase DbpA [Alcanivorax borkumensis SK2]
          Length = 459

 Score = 41.5 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 28/274 (10%), Positives = 71/274 (25%), Gaps = 33/274 (12%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRP-GMSIICIANSETQLKNTLWAEVSKWLSMLPH- 137
               A  G GKT      +L  ++ R  G   + +  +          E+ +      + 
Sbjct: 44  VIAQASTGSGKTAAFGLGLLHPLNPRYYGCQALVLCPTRELADQVAV-EIRRLARGPGNI 102

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
           +         + P     E              +        +  +           +  
Sbjct: 103 KVLTLCGGQPIGPQIGSLEH---------GAQIVVGTPGRVLKHLSKGTLSLDGLNTLVL 153

Query: 198 DEASGTPDIINKSILGFF---TELNPNRFWIMTSNTRR--------LNGWFYDIFNIPLE 246
           DEA    D+     +      T           +            ++   +       +
Sbjct: 154 DEADRMLDMGFYDSIAEVIRQTPPRRQTLLFSATYPPGIKQLAETFMSNPQHVEVETLHD 213

Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR-------IEILGQFPQQEVNNFIPH 299
           + +  Q                 I+ +   S V          +++ Q  +Q ++  + +
Sbjct: 214 NSQIEQRYYEVEPFQREEAVASAIACFRPVSCVVFCVTKQQCQDVVNQLCRQGLSAMVLN 273

Query: 300 NYIEEAMSREAID---DLYAPLIMGCDIAGEGGD 330
           + +E+    E +    +    +++  D+A  G D
Sbjct: 274 SDLEQRERDEVLTLFANRSLSVLVATDVAARGLD 307


>gi|111219429|ref|XP_646844.2| hypothetical protein DDB_G0268924 [Dictyostelium discoideum AX4]
 gi|90970905|gb|EAL73051.2| hypothetical protein DDB_G0268924 [Dictyostelium discoideum AX4]
          Length = 1772

 Score = 41.5 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 44/152 (28%), Gaps = 8/152 (5%)

Query: 80   CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
              I    G GKTT   +++  L++  P   I+    S   +         K L  L  + 
Sbjct: 1261 TLIQGPPGTGKTTTIYYLLSILLAINPEFKILVCGPSHASVDEIAKRCSKKKLIGLDGKP 1320

Query: 140  WFEM-----QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT-HGM 193
            +        +  ++ P      +  ++    S         +S           N     
Sbjct: 1321 YLPNMVRIGKKENISPDCHSISIFNKTQREKSDSIYRASIVFSTLSGSGSETVKNNFRAD 1380

Query: 194  AVFNDEASGTPDIINKSILGFFTELNPNRFWI 225
             +  DE++ + +    SI+            +
Sbjct: 1381 IILVDESTQSTEP--SSIIPLCIGNIEKLILV 1410


>gi|281200302|gb|EFA74523.1| DEAD/DEAH box helicase [Polysphondylium pallidum PN500]
          Length = 2185

 Score = 41.5 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 47/192 (24%), Gaps = 22/192 (11%)

Query: 41   KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
            K K + +F   +  Q +  + +                   I+A    GKT      +L 
Sbjct: 1349 KAKEIFNFKYFNAIQTQVFDCLYKGDD-----------NALIAAPANSGKTVCAELAVLR 1397

Query: 101  LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
             +   P    + IA  +      L     K+ + L  R                  + + 
Sbjct: 1398 ELKKNPNAKCVYIAPMQDLATLRLRDWTFKFQNTLGKRV----------VELTGEPITDN 1447

Query: 161  SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220
             +   +     T   +              +      DE        + +IL        
Sbjct: 1448 KLLESASIVIATAEKWDILSRRWKQRKSIQNISLFVVDELHMIGGGADGAILEIIVSR-M 1506

Query: 221  NRFWIMTSNTRR 232
                I T +  R
Sbjct: 1507 RFIAIQTGSPIR 1518


>gi|281420729|ref|ZP_06251728.1| putative prophage LambdaSa03, helicase [Prevotella copri DSM 18205]
 gi|281405021|gb|EFB35701.1| putative prophage LambdaSa03, helicase [Prevotella copri DSM 18205]
          Length = 553

 Score = 41.5 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 33/286 (11%), Positives = 67/286 (23%), Gaps = 48/286 (16%)

Query: 49  SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW----MMLWLIST 104
           +    +Q E           NV      I    +    G GKT +       ++ W    
Sbjct: 34  TGLRPYQAEM--------KHNVYGLWDRIDNVMLQMPTGTGKTIVFTSVVKDILRWCNLH 85

Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
                I+ +A+            + +    L +                   ++     +
Sbjct: 86  SRESKILIVAHRRE--------LIRQASRKLGNIP---------------HGVIVSGEKL 122

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
           D           +      +          +  DEA        + +   F   N  +  
Sbjct: 123 DLDKSIQVASIQTFMSRRHYEIMRRVQFDFIIIDEAHHCMAPGYQKLWEMF--PNSKKLG 180

Query: 225 IMTSNTRRL-----NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279
           + T+   R+        F DI      +W   Q      + I       +         +
Sbjct: 181 V-TATPWRMSHCGFTSLFGDIVLAKSIEWFVNQGYLANYDYISIKPTSEVQHAINGIDRM 239

Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP--LIMGCD 323
                 G +   E++  I    I   + +           +I   D
Sbjct: 240 GA---DGDYLDSELSAVIDKAKIRAGLYKSYEKYAKGKKGIIYAID 282


>gi|119496737|ref|XP_001265142.1| DNA-directed DNA polymerase theta, putative [Neosartorya fischeri
           NRRL 181]
 gi|119413304|gb|EAW23245.1| DNA-directed DNA polymerase theta, putative [Neosartorya fischeri
           NRRL 181]
          Length = 940

 Score = 41.5 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 46/318 (14%), Positives = 84/318 (26%), Gaps = 54/318 (16%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ   +  +         +          +A  G GK+ +   +ML  I   P    I 
Sbjct: 141 PWQASCL--LARGLLEGERH-------LVYTAPTGGGKSLVADVLMLKRIIEHPSRKAIL 191

Query: 113 IANSETQLKNTLWAEVSKWLSML---PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           +      ++  L     KWL  +     ++  +    +     +Y    +    I    Y
Sbjct: 192 VLPYVALVQEKL-----KWLRRIVENVEKNVPDDDDETARSKPYYQRWKKLQKSIRVTGY 246

Query: 170 TITCRTYSE-----------ERPDTFVGPHNTHGMA-----VFNDEASGTPDII------ 207
               RT +            E+ ++ +              V  DE     D        
Sbjct: 247 FGGSRTAASWADTDIAVCTIEKANSLINSAVEECSIGDLGVVVLDELHMLDDEHRGYILE 306

Query: 208 NKSILGFFTELNPNRF--WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265
                    + +          SNT  L  W   ++         +    R V   +   
Sbjct: 307 LMVTKLLLLQQDIQIIGMSATLSNTELLADWMNAMY---------FISTYRPVPIDEYLV 357

Query: 266 HEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYIEEAMSREA-IDDLYAPLIMGC 322
           +E  I        + +    +         +   PH  I+ +  RE       A + +  
Sbjct: 358 YENAIYPAATSRQLFQTITRLKSMKTISLTDTIPPHRMIQCSKHRELANPMTNAMVALAV 417

Query: 323 DIAGEGGDKTVVV-FRRG 339
           D A  G    V    R+G
Sbjct: 418 DTAAAGYGALVFCGSRQG 435


>gi|319637995|ref|ZP_07992759.1| hypothetical protein HMPREF0604_00382 [Neisseria mucosa C102]
 gi|317400640|gb|EFV81297.1| hypothetical protein HMPREF0604_00382 [Neisseria mucosa C102]
          Length = 762

 Score = 41.5 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 53/199 (26%), Gaps = 17/199 (8%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +  H           +F   +    G GKT  +    L          +I +    + +
Sbjct: 247 EILDHAVEQAAQPQG-LFTLTV--PTGGGKTFTSMAFALEHAKRHGMRRVIYVIPFTSII 303

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS-GWYAELLEQSMGIDSKHYTITCRTYS-- 177
           +    AE  K    L  +   E  S          A   +  +  ++    I   T    
Sbjct: 304 EQNA-AEFRKAFGELGEQAVLEHHSTFDDGKLQNEATKDKLRLASENWDAPIVVTTAVQF 362

Query: 178 -----EERPDTFVGPHNTHGMAVFNDEASGTPDI----INKSILGFFTELNPNRFWIMTS 228
                 +R       HN  G  +  DEA   P      I ++I       + +      +
Sbjct: 363 FESLFADRSSRCRKLHNIAGSVIILDEAQMLPLNLLLPIMQAIKELAQNYHCSVVMCTAT 422

Query: 229 NTR-RLNGWFYDIFNIPLE 246
               +    FY  F    E
Sbjct: 423 QPAVQAENGFYRGFENVRE 441


>gi|313836721|gb|EFS74435.1| type III restriction enzyme, res subunit [Propionibacterium acnes
           HL037PA2]
 gi|314929873|gb|EFS93704.1| type III restriction enzyme, res subunit [Propionibacterium acnes
           HL044PA1]
 gi|314972300|gb|EFT16397.1| type III restriction enzyme, res subunit [Propionibacterium acnes
           HL037PA3]
          Length = 347

 Score = 41.5 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 51/182 (28%), Gaps = 14/182 (7%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
            + +          ++  N    +  ++   G+GKT     ++  LI    G  I+ +  
Sbjct: 108 AKRLRYQYSAVQQALDPDN-LRPRILLADAVGLGKTIEIGMILSELIRRGRGERILIVCP 166

Query: 116 SE--TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173
                Q++N +W+  +     L       ++         ++      + +D+       
Sbjct: 167 RHVLEQMQNEMWSRFAIPFVRLDSVGLQRVKQKIPANRNPFSWYKRVIISMDTLKQDRFA 226

Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233
                         H     AV  DE+        ++     T        I+ S T   
Sbjct: 227 -----------HDLHRHEWNAVVIDESHNVTGDTTQNNRLARTLAPNTDALILASATPHN 275

Query: 234 NG 235
             
Sbjct: 276 GN 277


>gi|313899662|ref|ZP_07833165.1| CRISPR-associated endonuclease Cas3-HD [Clostridium sp. HGF2]
 gi|312955277|gb|EFR36942.1| CRISPR-associated endonuclease Cas3-HD [Clostridium sp. HGF2]
          Length = 788

 Score = 41.5 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 45/160 (28%), Gaps = 7/160 (4%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
           E   ++   C    ++ +P I++ +     G GKT  +    L          II +A  
Sbjct: 248 ELRASISDQC-KAFSSHSPGIYRLS--CPTGSGKTLASLRYALHHAKKYHKKHIIYVAPF 304

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQ-SLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
           +T L+         +   L   H   +  S       + +   +  +   +         
Sbjct: 305 KTILEQNAEVMKQFFNEDLVLEHHSNIIPSQYTDYDYYSSSWNKPVILTTAVRLFDVMF- 363

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
             ++R       H      +  DEA   P           
Sbjct: 364 --KDRTTDVRRFHQLADSVLIIDEAQKIPVQTISMFNEMM 401


>gi|300721107|ref|YP_003710375.1| type I site-specific deoxyribonuclease HsdR [Xenorhabdus
           nematophila ATCC 19061]
 gi|297627592|emb|CBJ88111.1| Type I site-specific deoxyribonuclease HsdR [Xenorhabdus
           nematophila ATCC 19061]
          Length = 1029

 Score = 41.5 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/188 (10%), Positives = 50/188 (26%), Gaps = 5/188 (2%)

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICI--ANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           +G GK+    W+  W+    P   ++ +            ++  V + +           
Sbjct: 277 QGSGKSLTMVWLAKWIRENVPNSRVLIVTDRTELDAQIEKVFTGVEENIYRTKSGADLIF 336

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
                +P    + + +     +++    T     E +            + VF DE    
Sbjct: 337 NLNRPNPWLICSLVHKFGHRSEAEDDAATDEYIKELKKSLPSDFRAKGDLFVFVDECH-- 394

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
               +  +      + P   +I  + T  +         +       Y+ D    +G+  
Sbjct: 395 -RTQSGKLHDAMKSILPEAVFIGFTGTPLMKKDKKKSIEVFGSFIHTYKFDEAVSDGVIL 453

Query: 264 GFHEGIIS 271
                   
Sbjct: 454 DLRYEARD 461


>gi|238919907|ref|YP_002933422.1| bacteriophage terminase large subunit [Edwardsiella ictaluri
           93-146]
 gi|238869476|gb|ACR69187.1| putative bacteriophage terminase large subunit [Edwardsiella
           ictaluri 93-146]
          Length = 558

 Score = 41.5 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 53/226 (23%), Gaps = 32/226 (14%)

Query: 54  WQLEFMEAVDVHCHSNVNNSNPTIFKCA---------ISAGRGIGKTTLNAWMMLWLIST 104
           W+L+ +  +       V        +           I   R +G +T     +L     
Sbjct: 24  WRLDNLYQIVDEQGRLVPFRMRPAQRQLFMEMHEKNLILKARQLGFSTAIDLYLLDQALF 83

Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
              +    +A  +        AE+ +    +P  H     +   H    +       +  
Sbjct: 84  SKNVKCGIVAQDKQAA-----AEIFRTKIEVPFDHLPGWLAGCFHAVKRHGGASGGYIEF 138

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
                 +   ++            +           +  P    +   G    +      
Sbjct: 139 AHGSNIMVATSFRSGTVQRLHISEHGKI-------CAKYPAKAKEVRTGTLNAVAEGSIV 191

Query: 225 IMTSNTRRLNGWFYDIFNIPLE-----------DWKRYQIDTRTVE 259
            + S    + G FYD+     E           D+K +        
Sbjct: 192 FIESTAEGVGGDFYDMSLRAQEMAQSRLPLSSQDYKFHFYAWWQDP 237


>gi|224539562|ref|ZP_03680101.1| hypothetical protein BACCELL_04467 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518843|gb|EEF87948.1| hypothetical protein BACCELL_04467 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 667

 Score = 41.5 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 80/267 (29%), Gaps = 25/267 (9%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRP-GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           + AG G GKT +  + + +L+       +I+ +  +    +  +   +++ +     RH 
Sbjct: 26  VIAGAGSGKTRVLTYKIAYLLENGYQPWNILALTFTNKAARE-MKERIARQVGDQRARHL 84

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
           +     S+     +AE               T +    +  D+     +        DE 
Sbjct: 85  WMGTFHSIFLRILHAEAANI---------GFTSQFTIYDTADSKSLVRSIIKEMG-LDEK 134

Query: 201 SGTPDIINKSILGFFTELNPNRFWIM--TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
              P     S+    +    +        SN     G          + + RY    R  
Sbjct: 135 VYKP----GSVQARISNAKNHLVSPAGYASNKEAYEGDCAAKMPAIRDIYHRYWDRCRQA 190

Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
           + +D             D          QF    V+ +   NY + ++  +   D     
Sbjct: 191 DAMDFDDLLFYTFILFRDHPEVLARYQEQFRYILVDEYQDTNYAQHSIVLQLAKDHQHVC 250

Query: 319 IMGCDIAGEGGDKTVVVFRRGNIIEHI 345
           ++       G D   +   RG  I++I
Sbjct: 251 VV-------GDDAQSIYSFRGADIDNI 270


>gi|116180300|ref|XP_001219999.1| hypothetical protein CHGG_00778 [Chaetomium globosum CBS 148.51]
 gi|121791807|sp|Q2HG76|MPH1_CHAGB RecName: Full=ATP-dependent DNA helicase MPH1
 gi|88185075|gb|EAQ92543.1| hypothetical protein CHGG_00778 [Chaetomium globosum CBS 148.51]
          Length = 1134

 Score = 41.5 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 59/214 (27%), Gaps = 13/214 (6%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              ++   G+GKT + A +ML          I+ +A ++      + A +   ++ +P  
Sbjct: 202 NTLVALPTGLGKTFIAATIMLNYFRWTKRSKIVFVAPTKPLASQQVQACLG--IAGIPRS 259

Query: 139 HWFEMQ-SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
               +             E          + + +T +T   +    +  P     + +  
Sbjct: 260 QATLLTGETPPVLRQGEWE--------SKRLFFMTPQTLMNDLSKGYADP--KSIVLLVV 309

Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257
           DEA           +  F         I+       +        I        +I T  
Sbjct: 310 DEAHRATGDYAYVKVVEFIRRFSKSIRILALTATPGSTVEGVQDIIDNLGISHVEIRTEE 369

Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
              I    H   I     D      E+ G F + 
Sbjct: 370 SIDIRQYVHSRNIDTVTFDPSDEMHEVRGLFSKA 403


>gi|328907729|gb|EGG27493.1| putative helicase [Propionibacterium sp. P08]
          Length = 343

 Score = 41.5 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 51/182 (28%), Gaps = 14/182 (7%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
            + +          ++  N    +  ++   G+GKT     ++  LI    G  I+ +  
Sbjct: 104 AKRLRYQYSAVQQALDPDN-LRPRILLADAVGLGKTIEIGMILSELIRRGRGERILIVCP 162

Query: 116 SE--TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173
                Q++N +W+  +     L       ++         ++      + +D+       
Sbjct: 163 RHVLEQMQNEMWSRFAIPFVRLDSVGLQRVKQKIPANRNPFSWYKRVIISMDTLKQDRFA 222

Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233
                         H     AV  DE+        ++     T        I+ S T   
Sbjct: 223 -----------HDLHRHEWNAVVIDESHNVTGDTTQNNRLARTLAPNTDALILASATPHN 271

Query: 234 NG 235
             
Sbjct: 272 GN 273


>gi|308185825|ref|YP_003929956.1| ATP-dependent RNA helicase dbpA [Pantoea vagans C9-1]
 gi|308056335|gb|ADO08507.1| ATP-dependent RNA helicase dbpA [Pantoea vagans C9-1]
          Length = 460

 Score = 41.5 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 57/223 (25%), Gaps = 22/223 (9%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR--------GIGKTTLNAWMMLWLI-STR 105
           QL+ +  +     + V  +       AI  GR        G GKT      +L  I STR
Sbjct: 14  QLDNLREMGYTSMTPVQAATLP----AILQGRDVRAQAKTGSGKTAAFGIGLLHHIDSTR 69

Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
                + +  +                ++L     F      L   G      ++   + 
Sbjct: 70  FQTQALILCPTRELADQV--------GNVLRQLARFTRNIKVLTLCGGQPMSAQRDSLVH 121

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225
              + +                       +  DEA    ++   + +    E  P     
Sbjct: 122 P-PHIVVGTPGRILDHINRENLKLDQLSTLVLDEADRMLEMGFLNDMETIIEATPASRQT 180

Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG 268
           +  +    +G          +       D   +  ID  F E 
Sbjct: 181 LLFSATWPDGITAISTRFQRDALSVVTEDVSELPSIDQQFFEA 223


>gi|304384818|ref|ZP_07367164.1| PBSX family phage terminase [Pediococcus acidilactici DSM 20284]
 gi|304329012|gb|EFL96232.1| PBSX family phage terminase [Pediococcus acidilactici DSM 20284]
          Length = 432

 Score = 41.5 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 19/201 (9%), Positives = 49/201 (24%), Gaps = 16/201 (7%)

Query: 87  GIGKTTLN-AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
             GKT  + A + L+ + + P  + +  A ++                +        +  
Sbjct: 34  RAGKTAADDARLALFYLVS-PNETHLVSAYNQELA-----------YKLFIEGDGLGLAY 81

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
           +    S    +     + ID              + ++          +V   E +    
Sbjct: 82  IFDGVSHLRRDRGGDHLEIDLPSGKKKVYFKGGGKSNSANSIRGLSLGSVAYSEMNLLDK 141

Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265
                     T     R+ +   N    +    + F      W            +    
Sbjct: 142 EFIDESF-RRTAAAKIRYHLADLNPPAPHDPIIETFKEYGAHW--LHWTMSDNPVMSEQR 198

Query: 266 HEGIISRYGLDSDVARIEILG 286
            + +  +   +    + + LG
Sbjct: 199 LKEMEEQLKRNPYRYKRDWLG 219


>gi|221130192|ref|XP_002154179.1| PREDICTED: similar to septin 9b [Hydra magnipapillata]
          Length = 402

 Score = 41.5 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 39/153 (25%), Gaps = 25/153 (16%)

Query: 6   STDQKLEQELHEMLMHAEC------VLSFKNFVM----RFFPWGIK-GKPLEHFSQPHRW 54
               + E+E+      A          +F N ++        WG+K   P++ +      
Sbjct: 48  PNFSETEKEIVNKKSEARSEKGMLSYNNFLNIMLETMGMTTQWGVKLKTPVDGYVGFDSI 107

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q +                    F   +    G+GK+TL        +         C  
Sbjct: 108 QEQL---------RLNALKRGFEFNIMVVGSAGLGKSTLIN-----TLFKTRAARASCTT 153

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
            + T  K      ++  L          +    
Sbjct: 154 ETNTIPKTVEIKTITHVLEEKGVNLKLTVTDTP 186


>gi|332653904|ref|ZP_08419648.1| phage terminase large subunit (GpA) [Ruminococcaceae bacterium D16]
 gi|332516990|gb|EGJ46595.1| phage terminase large subunit (GpA) [Ruminococcaceae bacterium D16]
          Length = 640

 Score = 41.5 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 30/269 (11%), Positives = 69/269 (25%), Gaps = 18/269 (6%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            W+ +    ++    +  +   P + K  + A   +GK+ L   ++ ++I   PG  I+ 
Sbjct: 51  PWRTKRTPYLEEPMRAFTD---PKVHKIVMVAASQVGKSELELNIIGYIIDQDPGS-ILY 106

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           +  +    +          L + P     +     +H                       
Sbjct: 107 VHPTIDDARKFS------RLRVAPMIRDSKPLKAKVHDVKAKDSGNTILQKSFPGGMLTL 160

Query: 173 --CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
               + S                  +   A    D    +     T  N     + T   
Sbjct: 161 TGSNSASALASTPARYIIGDERDR-WATSAGTEGDPWALAEARQATFYNAKAVEVSTPTI 219

Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI---DSGFHEGIISRYGLDSDVARIEILGQ 287
           +  +      +    E W     +      I   +  F        G  S   +  +   
Sbjct: 220 KGNSNIETSFYQGTQERWCHRCPECGEYSEIVFDNIHFDPEAKRIRGKKSWSLKSGV--S 277

Query: 288 FPQQEVNNFIPHNYIEEAMSREAIDDLYA 316
           +        IP + + +  ++   D+  A
Sbjct: 278 WSCPACGCLIPEDVMRKQPAKWIADNPDA 306


>gi|167841454|ref|ZP_02468138.1| phage-related DNA maturase [Burkholderia thailandensis MSMB43]
          Length = 598

 Score = 41.5 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 42/171 (24%), Gaps = 23/171 (13%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
           E    +        +          + A RG  KTT+ A   +W +   P   ++ I+  
Sbjct: 43  EVQADIAEFLEYGPHY-------LMVQAQRGQAKTTICALFAVWCLIHDPKFRVLIISAG 95

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
            TQ        V   ++M                +G    +    +    K    +    
Sbjct: 96  GTQANEISTLIVRVIMTMDILGCL-----RPDRNAGDRTSVEAFDVHHTLKGLDKSPSVA 150

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
                    G        +  D+         +S     TE        +T
Sbjct: 151 CVGVTGNLQGKRAD---LLIADD--------IESAKNSLTEHQRQALLQLT 190


>gi|170086129|ref|XP_001874288.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651840|gb|EDR16080.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1307

 Score = 41.5 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 51/157 (32%), Gaps = 12/157 (7%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              ++   G+GKT +   +ML      P   ++ +A ++  +      ++          
Sbjct: 223 NTLVALPTGLGKTFIAGAVMLNFYRWFPEGKVVFVAPTKPLVAQ----QIMACHETCGI- 277

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                   S+  +G   +        + + + +T +T   +       P     + +  D
Sbjct: 278 ----PGGDSIELNGEVPKATRARHWREKRVFFMTPQTLINDLHTEICDP--LDVVLLVVD 331

Query: 199 EASGTP-DIINKSILGFFTELNPNRFWIMTSNTRRLN 234
           EA     D     ++ F    NP+   +  + T   N
Sbjct: 332 EAHRATGDYAYNQVIRFLMAKNPHFRVLALTATPGNN 368


>gi|116493124|ref|YP_804859.1| superfamily II DNA/RNA helicase [Pediococcus pentosaceus ATCC
           25745]
 gi|116103274|gb|ABJ68417.1| DNA or RNA helicase of superfamily II [Pediococcus pentosaceus ATCC
           25745]
          Length = 950

 Score = 41.5 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 68/228 (29%), Gaps = 32/228 (14%)

Query: 9   QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68
           Q  + +        +    +   V    P        +    P+R Q   ++A+      
Sbjct: 174 QWQKAQPLNQKWIDQYAKFYSENVSLSSPTTPFQLENKSPLTPNRMQQAALKALINLRSE 233

Query: 69  NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
                     +  I +  G GKT L A    + +        + + + E  L+       
Sbjct: 234 GQK-------RGLIISATGTGKTYLAA----FDVRNYRPRKFLFVVHREQILR------- 275

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
                    +     +++   P+  Y  L   +  ID K+   T +T S  RPD      
Sbjct: 276 ---------KALLSFKNVLGGPADDYGILAGGTKEIDRKYVFATIQTLS--RPDILNELK 324

Query: 189 NTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
                 +  DEA        + I+  F    P     MT+   R + +
Sbjct: 325 ANTFDYILIDEAHKAGAASYQKIINHF---KPEFLLGMTATPERTDDF 369


>gi|320168067|gb|EFW44966.1| hypothetical protein CAOG_02972 [Capsaspora owczarzaki ATCC 30864]
          Length = 1972

 Score = 41.5 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 50/157 (31%), Gaps = 12/157 (7%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              +    G+GKT + A +M       P   ++ +A ++  ++  L A  S         
Sbjct: 80  NTLVCLPTGLGKTFIAAVVMYNFYRWFPTGKVVFMAPTKPLVQQQLEACFSIM------- 132

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                Q+ ++  +G  A+   +      +   +T +    +  D          + V  D
Sbjct: 133 --GVPQNETVMMTGSKAKEYRRETWRCKRILFVTPQILQHDLADGVCNAR--DFVCVVVD 188

Query: 199 EASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
           EA     D     ++      N     +  S T   N
Sbjct: 189 EAHKALGDYAYCQVIRHMVRTNRRFRVLALSATPGSN 225


>gi|124485198|ref|YP_001029814.1| hypothetical protein Mlab_0371 [Methanocorpusculum labreanum Z]
 gi|124362739|gb|ABN06547.1| DEAD/DEAH box helicase domain protein [Methanocorpusculum labreanum
           Z]
          Length = 656

 Score = 41.5 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 24/232 (10%), Positives = 53/232 (22%), Gaps = 23/232 (9%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS-T 104
             F +P   Q   +  +                     A  G GKT      ++  +   
Sbjct: 23  MGFEEPTPIQAMAIPQILDGKD------------VTGQAQTGTGKTAAFGIPIIERLDPD 70

Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
              +  + ++ +      T   E S+ +           + L++ P      +  Q   +
Sbjct: 71  NKNVQALVLSPTRELAIQTA-EEFSRLMK--------YKKGLNVVPIYGGQPIERQLRAL 121

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
                 +                H         DEA    D+  +  +       P    
Sbjct: 122 KGTVQVVIGTPGRVIDHIKRGTLHLDSVTMFILDEADQMLDMGFREDIEDIFRDTPKDRQ 181

Query: 225 IMTSNTRRLNGWFYDIFNIPLE-DWKRYQIDTRTVEGIDSGFHEGIISRYGL 275
            +  +                +  + +      TV  I+  + E        
Sbjct: 182 TILFSATMPQPILDITRRFQRDPQFVKITRKELTVPQIEQTYIEVRERDKLE 233


>gi|309364348|emb|CAP24997.2| hypothetical protein CBG_04253 [Caenorhabditis briggsae AF16]
          Length = 2026

 Score = 41.5 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 56/225 (24%), Gaps = 31/225 (13%)

Query: 45   LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            +  F   +  Q +   ++     S             I A  G GKT      M  L+  
Sbjct: 1172 IYGFDYFNPIQAQVFFSLYKTDKSA-----------LIGAPTGSGKTLCAELAMFRLLQD 1220

Query: 105  RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
             PGM ++ IA  ++ ++      V  W      +  FE+               +     
Sbjct: 1221 HPGMKVVYIAPLKSLVRER----VDDW------KKKFEVGMGYRVVEVSGDVTPDPEELS 1270

Query: 165  DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT-------- 216
             S     T   +           +      +  DE           +    +        
Sbjct: 1271 ASSILITTPEKWDGISRSWATREYVRRVGLIVLDEVHLLGVDRGAVLEAIVSRLKMITRR 1330

Query: 217  --ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
                +     +  S      G   +   IP E    ++   R V 
Sbjct: 1331 SHTRDEPVRLLGLSTALANAGDVAEWLGIPDEACYNFRPSVRPVP 1375


>gi|295106980|emb|CBL04523.1| Phage terminase-like protein, large subunit [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 440

 Score = 41.5 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 27/246 (10%), Positives = 54/246 (21%), Gaps = 25/246 (10%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           ++  R  GK+               G  ++  A+ +     T  +             +F
Sbjct: 28  LAVPRQNGKSLGTVQARSNYGMVALGEQVVYTAHLQKTATETFESIAG----------FF 77

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
             + +          L  + + + S                   G    HG  +  DEA 
Sbjct: 78  TSRKMVGRVKAVREALGREQIVLKSGARIKFLARTR-------NGGRGQHGDLLIFDEAQ 130

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLN--GWFYDIFNIPLEDWKRYQIDTRTVE 259
              D    S L   +     +  I        +  G  +          +          
Sbjct: 131 ELDDTQQSSFLFAISASPNPQT-IYAGTPPDEDSPGTVFKRIRAAALGGRTRTTSWDEWS 189

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAP 317
             +          +   +    I I    P          +  + A  R      D    
Sbjct: 190 VPEIPEDPRDRRIWAATNPSLGITIQ---PSTIETEIEQMDAAKLARERFGWWAPDTGVE 246

Query: 318 LIMGCD 323
            ++  D
Sbjct: 247 RVVDAD 252


>gi|254565621|ref|XP_002489921.1| Putative RNA helicase related to Ski2p, involved in translation
            inhibition of non-poly(A) mRNAs [Pichia pastoris GS115]
 gi|238029717|emb|CAY67640.1| Putative RNA helicase related to Ski2p, involved in translation
            inhibition of non-poly(A) mRNAs [Pichia pastoris GS115]
 gi|328350332|emb|CCA36732.1| pre-mRNA-splicing helicase BRR2 [Pichia pastoris CBS 7435]
          Length = 1942

 Score = 41.5 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 35/124 (28%), Gaps = 15/124 (12%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLIS-TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
               I +  G GKT + A + +W      PG  ++ IA  +  ++      V  W + L  
Sbjct: 1139 NVFIGSPTGSGKT-VVAELAIWHAFKEFPGSKVVYIAPMKALVRER----VDDWRARLTG 1193

Query: 138  RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
                E+   SL  +    E        +            +                +  
Sbjct: 1194 NKVVELTGDSLPEAKEIREANIVITTPEKFDGISRNWQTRKFV---------QQVSLIIM 1244

Query: 198  DEAS 201
            DE  
Sbjct: 1245 DEIH 1248


>gi|227821702|ref|YP_002825672.1| DNA packaging protein Gp2 [Sinorhizobium fredii NGR234]
 gi|227340701|gb|ACP24919.1| DNA packaging protein Gp2 [Sinorhizobium fredii NGR234]
          Length = 416

 Score = 41.5 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 63/264 (23%), Gaps = 32/264 (12%)

Query: 83  SAGRGIGKTTLNAWMML---------WLISTRPGMSIICIA--NSETQLKNTLWAEV--- 128
            AG  +GKT   A             W    R    I+ +A   S    ++ +   +   
Sbjct: 1   MAGNQLGKTLAGAAEAAMHLTGRYPDWWDGRRFDKPIVMLAGSESYELTRDGVQRLMVGP 60

Query: 129 ----SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
                 W +    +            SG    L   ++   S   +I      E+    +
Sbjct: 61  PMNEEDWGTGCIPKAAIVGTPTRR--SGVSGALDSVTVRHVSGGVSILLFKAYEQGRGKW 118

Query: 185 VGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-I 243
                     V+ DE    P+ +     G            +T    +        +   
Sbjct: 119 Q---ANTVDYVWFDEEP--PEDVY--FEGITRTNATRGSIAVTFTPLKGMSTVVARYILE 171

Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
              D +   +     E       + II  Y      AR +     P        P    E
Sbjct: 172 KSPDREVITMTIDDAEHYTPEERQRIIDSYPAHEREARTKG---VPSLGSGRIFPVAE-E 227

Query: 304 EAMSREAIDDLYAPLIMGCDIAGE 327
                      +   I G D   +
Sbjct: 228 SITIAPFEIPKHWVQIGGLDFGWD 251


>gi|118374210|ref|XP_001020295.1| UvrD/REP helicase family protein [Tetrahymena thermophila]
 gi|89302062|gb|EAS00050.1| UvrD/REP helicase family protein [Tetrahymena thermophila SB210]
          Length = 745

 Score = 41.5 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 29/269 (10%), Positives = 68/269 (25%), Gaps = 21/269 (7%)

Query: 66  CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW 125
                           ++A  G GKT      +   I      S ICI     Q  N + 
Sbjct: 15  QQQKEFIYASKRRDIKVTACAGSGKTQCVLMYVKEAIDEGFDPSAICITTFNIQASNDMK 74

Query: 126 AEVSKWLS-------------MLPHRHWFEMQ-SLSLHPSGWYAELLEQSMGIDSKHYTI 171
               + +               L  + +  +Q +     +      +E+ + ID      
Sbjct: 75  KRAVQLIGKDKADKIEITNIDKLITKLFNSIQRAKKQKDNEKQKNEIEKELLIDITLVEK 134

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
             + Y + +  +           +  DE      +          +       ++  +  
Sbjct: 135 QSQVYEDLQDLSLSKEIFEKYKIIIFDEFQDINQLQYDIF--MLFKKIGESILVVVGD-D 191

Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
             N + +   N      K  +   R  + I       ++      +     +I     + 
Sbjct: 192 AQNIYEFRGSNYEFLRSKVIEDVNRENKRIYGSEDYTMLDIKLTTNFRCSSKIT----KF 247

Query: 292 EVNNFIPHNYIEEAMSREAIDDLYAPLIM 320
             +     N I++   +      Y  + +
Sbjct: 248 ANDIIKSFNIIQQNTMQSYEGYSYEDIAI 276


>gi|268530400|ref|XP_002630326.1| Hypothetical protein CBG04253 [Caenorhabditis briggsae]
          Length = 1794

 Score = 41.5 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 56/225 (24%), Gaps = 31/225 (13%)

Query: 45   LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            +  F   +  Q +   ++     S             I A  G GKT      M  L+  
Sbjct: 953  IYGFDYFNPIQAQVFFSLYKTDKSA-----------LIGAPTGSGKTLCAELAMFRLLQD 1001

Query: 105  RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
             PGM ++ IA  ++ ++      V  W      +  FE+               +     
Sbjct: 1002 HPGMKVVYIAPLKSLVRER----VDDW------KKKFEVGMGYRVVEVSGDVTPDPEELS 1051

Query: 165  DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT-------- 216
             S     T   +           +      +  DE           +    +        
Sbjct: 1052 ASSILITTPEKWDGISRSWATREYVRRVGLIVLDEVHLLGVDRGAVLEAIVSRLKMITRR 1111

Query: 217  --ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
                +     +  S      G   +   IP E    ++   R V 
Sbjct: 1112 SHTRDEPVRLLGLSTALANAGDVAEWLGIPDEACYNFRPSVRPVP 1156


>gi|316983443|gb|ADU76211.1| polyprotein [Dengue virus 3]
          Length = 2808

 Score = 41.5 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 47/185 (25%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1628 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1681

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +    +        T     P         +   +  DEA    D 
Sbjct: 1682 ------------EHTGREIADLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1723

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1724 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1780

Query: 264  GFHEG 268
             +   
Sbjct: 1781 EWITD 1785


>gi|319425286|gb|ADV53360.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 419

 Score = 41.5 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 48/233 (20%), Gaps = 22/233 (9%)

Query: 57  EFMEAVDVH----CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM---- 108
           E ++A+  H                      A  G GKT       L  +   P      
Sbjct: 14  ESLKAMGHHSPTTIQQETIPYALEQRDILARAPTGTGKTASFLLPTLQHLIDFPRRFSGQ 73

Query: 109 -SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
             I+ +  +          E++  +      H    Q L +           Q   +   
Sbjct: 74  ARILILTPT---------RELASQIHRYAC-HLATDQGLDIAIITGGVPYAPQEEALAGN 123

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
              +                       +  DEA    D+   S++         R   M 
Sbjct: 124 VDILVATPGRLMEYLDKGKFSAEEVDILIIDEADRMLDMGFSSVVQAIALEAQGRKQNML 183

Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280
            +     G         L+D     +        +       I          
Sbjct: 184 FSATLEGGGVQRFAREVLKDPIEIDV---DAPRSEKAKIHQWIHLADDKEHKF 233


>gi|50302989|ref|XP_451432.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49640563|emb|CAH03020.1| KLLA0A09889p [Kluyveromyces lactis]
          Length = 1960

 Score = 41.5 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 38/121 (31%), Gaps = 12/121 (9%)

Query: 82   ISAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
            + +  G GKT + A + +W      PG  ++ IA  +  ++      V+ W   +     
Sbjct: 1155 VGSPTGSGKT-VVAELAIWHAFRDYPGSKVVYIAPMKALVRER----VNDWRKRI----- 1204

Query: 141  FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
              +    +      +    Q +  D+     T   +     +        +   +  DE 
Sbjct: 1205 TPVTGDRIVELTGDSVPDPQDIK-DATIVITTPEKFDGISRNWQTRKFVQNVSLIIMDEI 1263

Query: 201  S 201
             
Sbjct: 1264 H 1264


>gi|78187155|ref|YP_375198.1| CRISPR-associated helicase Cas3 family protein protein [Chlorobium
           luteolum DSM 273]
 gi|78167057|gb|ABB24155.1| CRISPR-associated helicase, Cas3 family [Chlorobium luteolum DSM
           273]
          Length = 692

 Score = 41.5 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 37/267 (13%), Positives = 71/267 (26%), Gaps = 19/267 (7%)

Query: 22  AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81
           +E   +F +F+ R    G K  P+                + +          P +F   
Sbjct: 158 SELKDTFNHFMARKQA-GAKDSPVNRA-----------RNLILEECRTNAALEPGLFSLT 205

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           +    G GKT  +    L          II      + ++ T       + +     H  
Sbjct: 206 V--PTGGGKTLCSMAFALEHAIRFQKKRIIVAIPYTSIIEQTADQYRQIFGNDAVLEHHS 263

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
            +           A     +  I + +  +    +   +       HN     +  DEA 
Sbjct: 264 NLDPEKGSGKYRLASENWDAPIIVTTNVQLFESLF-AAKSSACRKLHNIVNSVIVLDEAQ 322

Query: 202 GTPDIINK---SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
             P    +   S+L    E       + T+    L+G      N+          +  + 
Sbjct: 323 MLPTGYLQPVVSVLELLAEHFRTSIVLCTATQPVLSGRVGTGQNVLKGFKNDGVRELMSD 382

Query: 259 EGIDSGFHEGIISRYGLDSDVARIEIL 285
                   + +      D+D  R E  
Sbjct: 383 PDNLFKVFQRVTVNMLGDADE-RHEWD 408


>gi|308476267|ref|XP_003100350.1| hypothetical protein CRE_22485 [Caenorhabditis remanei]
 gi|308265092|gb|EFP09045.1| hypothetical protein CRE_22485 [Caenorhabditis remanei]
          Length = 1870

 Score = 41.5 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 58/222 (26%), Gaps = 31/222 (13%)

Query: 48   FSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107
            F   +  Q +   ++     S             + A  G GKT      M  L+   PG
Sbjct: 1030 FDYFNPIQAQVFYSLYKTDKSA-----------LVGAPTGSGKTLCAELAMFRLLQDHPG 1078

Query: 108  MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
            M ++ IA  ++ ++      V  W     +   + +  +S   +    EL   S+     
Sbjct: 1079 MKVVYIAPLKSLVRER----VDDWKQKFENGMGYRVVEVSGDVTPDPQELQASSI----- 1129

Query: 168  HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT----------E 217
                T   +           +      +  DE           +    +           
Sbjct: 1130 -LITTPEKWDGISRSWATREYVRRVGLIVLDEVHLLGVDRGAVLEAIVSRLKMITRRSHT 1188

Query: 218  LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
                   +  S      G   +   IP E    ++   R V 
Sbjct: 1189 REEPVRLLGLSTALANAGDVAEWLGIPDEACFNFRPSVRPVP 1230


>gi|311112398|ref|YP_003983620.1| hypothetical protein HMPREF0733_10728 [Rothia dentocariosa ATCC
           17931]
 gi|310943892|gb|ADP40186.1| conserved hypothetical protein [Rothia dentocariosa ATCC 17931]
          Length = 907

 Score = 41.5 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 46/163 (28%), Gaps = 21/163 (12%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL------- 132
            A+    G GKT L + ++  L++   G  +  +A S   ++N L A + + L       
Sbjct: 501 VAVQGPPGSGKTFLGSQVIARLVAA--GAKVGVVAQSHAVVENMLTACLERNLFPADRVM 558

Query: 133 -----SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187
                S LP   W E+    L      +  L       +          +          
Sbjct: 559 RAKGKSQLPDYPWVEVSDKDLTALLDKSSGLSSE-KSGTGTSPGVLFGGTAWDFANPNRI 617

Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
                  +  DEA          +          R  ++  + 
Sbjct: 618 PEGSLDLLVIDEAGQFS------LANTLAVGRAARNLLLLGDP 654


>gi|260905995|ref|ZP_05914317.1| TrwC relaxase [Brevibacterium linens BL2]
          Length = 1152

 Score = 41.5 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 48/188 (25%), Gaps = 19/188 (10%)

Query: 40  IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99
               P     +P   +L     +D                  +    G GKTT+ A  + 
Sbjct: 426 EAQAPNREPPRPDLTELAAEHGLDAGQAEAAAAVASRDPLVVVEGAAGSGKTTMLATAI- 484

Query: 100 WLISTRPGMSIICIANSET--QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
                  G S+  +  ++   Q+        +  ++ L + H F      +       + 
Sbjct: 485 -EALDHDGRSVRVVTPTKKAAQVAAETLKVPADSVAALVYAHGFRWNDDGVWTRLNPGDA 543

Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217
              +    +       R    ER              V  DEA         ++L    E
Sbjct: 544 DPATGQTYTGPR-KGARLVRGER--------------VIVDEAGMLDQDTALALLTIIRE 588

Query: 218 LNPNRFWI 225
              +   +
Sbjct: 589 AKASVALV 596


>gi|17546658|ref|NP_520060.1| terminase (ATPase subunit) related protein [Ralstonia solanacearum
           GMI1000]
 gi|17428957|emb|CAD15641.1| probable terminase (atpase subunit) related protein [Ralstonia
           solanacearum GMI1000]
          Length = 506

 Score = 41.5 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 37/347 (10%), Positives = 80/347 (23%), Gaps = 35/347 (10%)

Query: 39  GIKGKPLEHFSQPHRWQLEFMEA----VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN 94
           G + K   +   P   Q + ++A    +  +             +  + + R IG T   
Sbjct: 124 GPRSKLERNAISPEE-QTQLLKAFRDSMFDYQRVWYEAGQVERIRNLLKS-RQIGATWYF 181

Query: 95  AWMMLWLISTRPGMSIICIANSET----QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
           A        T  G  I   A+       +     +A+ +  + +          +     
Sbjct: 182 AREAFIDALTTGGNQIFLSASKAQAHVFKQYIVQFAKDAAGVELKGDPMVLPNGATLYFL 241

Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS 210
                        +    Y    R     +  + +  H       +    S         
Sbjct: 242 GTNARTAQSYHGNLYFDEYFWVPRFQELRKVASGMAIHKHWRQT-YFSTPSSLSHEAYPF 300

Query: 211 ILGFFTELNP-NRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI 269
             G            I        +    D        W++       + G  + F    
Sbjct: 301 WSGALFNRGKAKDKQIKL---DVSHAALRDGLRCADGQWRQIVTVEDALRGGCNLFDLDQ 357

Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY-----------APL 318
           +     + +     ++  F   +  +  P + +   M                     P+
Sbjct: 358 LRLEYSEPE-FANLLMCAFID-DNASVFPLSMLMRGMVDSWEAWEDFRPFAPRPFGNRPV 415

Query: 319 IMGCDIAGEGGDKTVVVFRRGN-------IIEHIFDWSAKLIQETNQ 358
            +G D  G GGD   +V             +     +     +E   
Sbjct: 416 WVGYDPNGGGGDSAALVVVAPPLVPGGKFRVLERHQFRGIDYEEQAG 462


>gi|326800862|ref|YP_004318681.1| hypothetical protein Sph21_3473 [Sphingobacterium sp. 21]
 gi|326551626|gb|ADZ80011.1| hypothetical protein Sph21_3473 [Sphingobacterium sp. 21]
          Length = 543

 Score = 41.5 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 26/208 (12%), Positives = 46/208 (22%), Gaps = 10/208 (4%)

Query: 85  GRGIGKTTL-NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP---HRHW 140
           GRG GKT    A       +  P  +   +  +  QL +     + K    L    + H+
Sbjct: 26  GRGTGKTQGPIAHRSTSFANKMPRGATGIVGKTYMQLLDRTLPPLLKAWETLGYYENIHY 85

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
           +         +                 +      +     D     +      +  DEA
Sbjct: 86  WVKTRPQDKLNIPKPLYKVLHPEYS--IFWWNGHVFHLISQDRPGLANGKTLDNIICDEA 143

Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRYQIDTRTVE 259
                      +      N   F  +       +   Y      P   W   +      +
Sbjct: 144 RFLNHQRYTDDIAPINRGNLEYFSHL---PEHHSVTMYSDMPRDPKGKWLLEKKAQMDSK 200

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQ 287
           GI                 +      GQ
Sbjct: 201 GIAEIAFMQYEQNKIKQQMLLPNLTDGQ 228


>gi|115613179|ref|XP_781239.2| PREDICTED: similar to Fanconi anemia complementation group M
           [Strongylocentrotus purpuratus]
 gi|115925565|ref|XP_001193687.1| PREDICTED: similar to Fanconi anemia complementation group M
           [Strongylocentrotus purpuratus]
          Length = 2463

 Score = 41.5 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 18/162 (11%), Positives = 46/162 (28%), Gaps = 12/162 (7%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
                   ++   G+GKT + A +M       P   I+ +A ++      ++ ++    +
Sbjct: 71  QALFKNTLVTLPTGLGKTFIAAVVMYNFYRWYPRGKIVFMAPTKP----LVFQQIEACFN 126

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
           ++       ++           +  +           +T        P T          
Sbjct: 127 IMGIPQEDMVEMTGNMHPPERKKSWQVQRVFFLTPQVMTNDLSRRACPAT-------DVK 179

Query: 194 AVFNDEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
            V  DEA     +     ++   ++       +  S T   +
Sbjct: 180 CVIVDEAHKALGNHAYCQVVRELSKYTSQFRVLALSATPGGD 221


>gi|83309455|ref|YP_419719.1| superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
 gi|82944296|dbj|BAE49160.1| DNA or RNA helicase of superfamily II [Magnetospirillum magneticum
           AMB-1]
          Length = 523

 Score = 41.5 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 48/187 (25%), Gaps = 32/187 (17%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q   + A+  +      +    I     +AG   GK  + +  +  ++   P   I+
Sbjct: 5   RPYQQAALTAIYDYFGRKSGHPLIVIP----TAG---GKALVLSAFIKEVLENWPDQRIL 57

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            + +    +       +                   L P              D     +
Sbjct: 58  VVTHVRELIAQNYAELIG------------------LWPDAPAGIYSAGLGKRDLGARIL 99

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP---DIINKSILGFFTELNPNRFWIMTS 228
                S  +    +         V  DEA   P   D + +  L     +NP+   I  +
Sbjct: 100 FAGIQSIHKRAYDI----QQCDLVLIDEAHLIPCASDTMYRRFLDTLARINPHLKVIGFT 155

Query: 229 NTRRLNG 235
            T     
Sbjct: 156 ATPYRLD 162


>gi|157737907|ref|YP_001490591.1| phage uncharacterized protein [Arcobacter butzleri RM4018]
 gi|157699761|gb|ABV67921.1| phage uncharacterized protein [Arcobacter butzleri RM4018]
          Length = 573

 Score = 41.1 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 55/193 (28%), Gaps = 24/193 (12%)

Query: 22  AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81
            +    F  F   +FP               + Q E +E +      ++    P   K A
Sbjct: 69  EKQKSDFHYFRRTYFP------HYYSLEGKSKLQDE-LETIYYKIIDDLK---PMGLKFA 118

Query: 82  ISAGRGIGKTTLNAWMM-LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           I+A RG GK+T  +    +W I       I   +++    +  + A  ++       +  
Sbjct: 119 IAAPRGFGKSTDVSIAFPIWCIVNNYKHFITLFSDAIELAETLVEAIKAELEENERLKQD 178

Query: 141 F--EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP--------DTFVGPHN- 189
           F        +   G         +        +    +   RP        +      + 
Sbjct: 179 FSNACGIGKVWKIGEIVTNNNIKVKAYGSGKRVRGVKHGTFRPDLAIIDDLENDTNVRSR 238

Query: 190 --THGMAVFNDEA 200
                +  + DEA
Sbjct: 239 TQRDKLEDWLDEA 251


>gi|255656171|ref|ZP_05401580.1| ATP-dependent RNA helicase [Clostridium difficile QCD-23m63]
          Length = 497

 Score = 41.1 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 20/235 (8%), Positives = 53/235 (22%), Gaps = 13/235 (5%)

Query: 60  EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-SIICIANSET 118
             +       V           + +  G GKT   A  +   I+        + +  +  
Sbjct: 23  YNIPSRVQIEVIPKLLNGQNLVVKSKTGSGKTASFAIPLCENINVEYNNIQALIVVPTRE 82

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
                   E+S    +   R         +               +  + + +       
Sbjct: 83  LALQV-KDEISSIGRLRKVRCSAIFGKQPIKEQIA---------ELKQRVHIVVATPGRI 132

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNT-RRLNGW 236
                       +   +  DEA         + +      L   +   + S T      +
Sbjct: 133 IDHINKGTIKLENIKYLIIDEADKMFNKGFVEQMEKILLNLPKEKIVGLFSATIDEEIKY 192

Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
             + +          +  + T +       + I +       + +  I  + P+ 
Sbjct: 193 ICEKYIPDYSVINIEENKSDTNQRTRQIDDKIIKTNEREKYILLKELIYSENPKS 247


>gi|194472054|ref|ZP_03078038.1| large subunit terminase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205358723|ref|ZP_02658709.2| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194458418|gb|EDX47257.1| large subunit terminase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205332242|gb|EDZ19006.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 570

 Score = 41.1 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 53/242 (21%), Gaps = 31/242 (12%)

Query: 5   ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64
           +S   + EQ L  +   +    +    +   +    +   L  F      Q +    +  
Sbjct: 15  LSGMSEAEQRLFILTKLS----NPWWRLNHLYTVQNEKGELVTFRM-RPAQRQLFRNMHN 69

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124
                         K  I   R +G +T     +L        +    +A  +       
Sbjct: 70  --------------KNIILKARQLGFSTAIDIYLLDQALFTAHLKCGIVAQDKQAASEIF 115

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
             +++     LP                         +            ++        
Sbjct: 116 RTKIAVPFDNLPPWLRASFTVAERRSGASG-----GYILFGHGSSIQVATSFRSGTVQRL 170

Query: 185 VGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244
               +           +  P    +   G    +         S    + G FYD+ N  
Sbjct: 171 HISEHGKI-------CAKYPAKAKELRTGTLNAVADECIIFDESTAEGVGGDFYDMSNRA 223

Query: 245 LE 246
            E
Sbjct: 224 QE 225


>gi|254038860|ref|ZP_04872912.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|226838825|gb|EEH70852.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
          Length = 623

 Score = 41.1 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/175 (12%), Positives = 45/175 (25%), Gaps = 9/175 (5%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            ++ +       S+P   +  +    G GK+ L +              ++ I       
Sbjct: 21  QIEAYIKIREFFSDPEHREALVILPTGTGKSGLISIA----PYGVSQKRVLIITPGLVT- 75

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           K+++              +     S  +     Y   +       S       +  S  R
Sbjct: 76  KDSIRKTQEVLEDNFWINYDIVFSSKDIPVVSEYTPDISSEHLEQSHIIFSNIQRISGNR 135

Query: 181 PDTF-VGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
                          +  DEA   P    +  L +F+     +   +T    R +
Sbjct: 136 KSALINRVPEDFFDFIIVDEAHHAPAQSWRDALKYFS---KAKVLHVTGTPYRGD 187


>gi|195328224|ref|XP_002030816.1| GM24369 [Drosophila sechellia]
 gi|194119759|gb|EDW41802.1| GM24369 [Drosophila sechellia]
          Length = 687

 Score = 41.1 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 42/145 (28%), Gaps = 12/145 (8%)

Query: 72  NSNPTIFK-CAISAGRGIGKTTLNAWMMLWLISTRPGMS-----IICIANSETQLKNTLW 125
              P   +   +SA  G GKT   A  ++ L+S R         ++ +A    Q+   + 
Sbjct: 177 KPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVDCKVRALVVLPVAELALQVYRVIS 236

Query: 126 AEVSKW-LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
           A  SK  L         +++         Y                +T      +     
Sbjct: 237 ALCSKTDLEACLLSKQHKLEDEQEKLVEQYKGKY-----YSKADIVVTTPGRLVDHLHAT 291

Query: 185 VGPHNTHGMAVFNDEASGTPDIINK 209
            G        +  DEA    D + +
Sbjct: 292 KGFCLKSLKFLIIDEADRIMDAVFQ 316


>gi|148951|gb|AAC36867.1| DNA helicase II [Haemophilus influenzae]
 gi|739972|prf||2004269A DNA helicase II
          Length = 727

 Score = 41.1 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 81/302 (26%), Gaps = 29/302 (9%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIA 114
           E ++ ++      V           + AG G GKT +    + WLI+       SI+ + 
Sbjct: 6   ELLDGLNDKQREAVAAPLGNH---LVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 62

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            +            S       H+ +          +          +G+      +   
Sbjct: 63  FTNKAAAEMRHRIQSTLAKHAQHQLFGMWIGTFHSIARRLLRAHHLDVGLPQDFQILDSE 122

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
                     +  HN        DE +  P       +    +               + 
Sbjct: 123 -DQLRLIKRLLKLHN-------FDEKAF-PPKQACWYINNKKDEGLR--------PNDIE 165

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294
            +        ++ ++ YQ        +D       +        +       +F    V+
Sbjct: 166 DFNDRQEREWIKIYQIYQDTCDRAGLVDFAELLIRVYELFEKKPLILQRYQQRFQHILVD 225

Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354
            F   N I+     + +      +++  D      D++ +   RG  IE+I  +      
Sbjct: 226 EFQDTNKIQYK-WIKFLPGKTGQVMIVGD-----DDQS-IYGWRGAQIENIQKFLKDFKA 278

Query: 355 ET 356
           ET
Sbjct: 279 ET 280


>gi|193676308|ref|XP_001946967.1| PREDICTED: activating signal cointegrator 1 complex subunit 3
            [Acyrthosiphon pisum]
          Length = 2156

 Score = 41.1 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/173 (9%), Positives = 43/173 (24%), Gaps = 21/173 (12%)

Query: 45   LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            L  F+  +  Q +    +    +              + A  G GKT      M  + + 
Sbjct: 1323 LYGFTHFNPIQTQIFHCLYHTDN-----------NVLLGAPTGSGKTIAAEIAMFRVFNE 1371

Query: 105  RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
            +P   ++ IA  +  ++  +     +    L          ++              +  
Sbjct: 1372 QPDAKVVYIAPLKALVRERMKDWKIRLEEKLKKSVVELTGDVTPDIRA---ISNSSVIVT 1428

Query: 165  DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217
              + +    R++                  V  DE     +     +    + 
Sbjct: 1429 TPEKWDGVSRSWQTRNYV-------RQVALVVLDEVHLLGEDRGPVLEIIISR 1474


>gi|254360774|ref|ZP_04976922.1| possible helicase [Mannheimia haemolytica PHL213]
 gi|153091344|gb|EDN73318.1| possible helicase [Mannheimia haemolytica PHL213]
          Length = 762

 Score = 41.1 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 49/179 (27%), Gaps = 14/179 (7%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           +++   G GKT  +    L          II +    + ++    AE  K    L     
Sbjct: 264 SLTVPTGGGKTFTSMAFALEHAKQYGLCRIIYVIPFTSIIEQNA-AEFRKAFGELGTEAV 322

Query: 141 FEMQSLSLHPSGW-YAELLEQSMGIDSKHYTITCRTYS-------EERPDTFVGPHNTHG 192
            E  S   H S    +   +  +  ++    +   T          +R       HN  G
Sbjct: 323 LEHHSTFDHDSLPDKSSRDKLKLASENWDTPVVVTTAVQFFESLFADRSSRCRKLHNIVG 382

Query: 193 MAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTR-RLNGWFYDIFNIPLE 246
             +  DEA   P      I  +I         +      +         FY  F    E
Sbjct: 383 SVIILDEAQMLPLNLLRPIMAAIDELARNYQCSVVLCTATQPAIHQANGFYKGFENVRE 441


>gi|157877576|ref|XP_001687105.1| helicase [Leishmania major strain Friedlin]
 gi|68130180|emb|CAJ09491.1| putative helicase [Leishmania major strain Friedlin]
          Length = 1285

 Score = 41.1 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 64/243 (26%), Gaps = 24/243 (9%)

Query: 43  KPLEHFSQP-HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101
              E   +P   +Q   +  +     +N+N               G+GKT     ++ + 
Sbjct: 255 LDTEGGQRPLRHYQRSALRWMVHLYENNLNGILADEM--------GLGKTVQTIALLCYF 306

Query: 102 ISTRPGMSI-ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
              R      + +  +   L     AE+ +W   L    +             +      
Sbjct: 307 AEYRNDWGPHLIVVPTTVVLN--WKAELERWSPGLKVLTYIGSTKERHQLRKGWT----- 359

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220
                S+     C T                   +  DEA    +           +L  
Sbjct: 360 -----SEDAFHVCVTSYNLVVQDRKVFRRRPWGFLVLDEAHHVKN-FMSLKWQSLFDLQA 413

Query: 221 NRFWIMTSNT-RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279
               ++T    +      + +F+  L     ++ +    E   +   E I  R  L+  +
Sbjct: 414 EYRLLLTGTPLQNSIMELWSLFHFLLPFASAFRSNAEFKEWFSNPMDEMITGRSTLNEAI 473

Query: 280 ARI 282
            R 
Sbjct: 474 VRR 476


>gi|332827709|gb|EGK00444.1| hypothetical protein HMPREF9455_03087 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 589

 Score = 41.1 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 25/225 (11%), Positives = 53/225 (23%), Gaps = 26/225 (11%)

Query: 85  GRGIGKTTLNAWMMLWLISTR-PGMSIICIANSETQLKNTLWAEV-SKWLSMLPHRHWFE 142
           GRG GKTT      +  +    PG  ++  A +   + + +   +   +L       +FE
Sbjct: 36  GRGSGKTTHILAPRVDRVQNDMPGALVVLAAATYKSILDNIVPGILEYFLEKYQRGVYFE 95

Query: 143 MQSLSLHPSG--------WYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
                    G        W    +E+          +          D        +   
Sbjct: 96  FGKKPPEHFGVATHQHPNWSRNEIEKITDFKHTITFVNGTVIKFVSCDRPESMLGLNAAH 155

Query: 195 VFNDEASGTPDIIN-KSILGFFTELNPNR-----FWIMTS---NTRRLNGWFYDIFNIPL 245
           +F DE    P+    + I+               +  +T              D +    
Sbjct: 156 LFIDEMIRIPEEKFLERIMPALRADRSKFGHSHYYMGITGFSSTPNFETD--EDWWTKNE 213

Query: 246 EDWK-----RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
           +D                +                + +  +  + 
Sbjct: 214 KDHNQPLMDCILEIAYEADLRMGKLLVARAEADMEEVNKLQRFVD 258


>gi|115901674|ref|XP_782047.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115931835|ref|XP_001181037.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 960

 Score = 41.1 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 18/150 (12%), Positives = 45/150 (30%), Gaps = 15/150 (10%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q + +             S       +++A RG GK+     + +         +I   A
Sbjct: 260 QAKALLKFVESISEKTLRST-----VSMTAARGRGKSAAL-GLAIATAVAFGYSNIFVTA 313

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            S   ++  L+  + K    L ++   + + +      +   ++  ++  + +       
Sbjct: 314 PSPENIRT-LFEFIFKGFDGLDYQEHLDYELVQSTNPEFNKAVIRVNIFREHRQTIQYIH 372

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                +              V  DEA+  P
Sbjct: 373 PGDAHKLSQAE--------LVVIDEAAAIP 394


>gi|291164759|gb|ADD80789.1| TerL [Rhodococcus phage ReqiDocB7]
          Length = 660

 Score = 41.1 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/265 (10%), Positives = 68/265 (25%), Gaps = 32/265 (12%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAIS-AGRGIGKTTLNAW----MMLWLISTRPGMSIIC 112
            M A+       ++ +  ++ + A+   G GIGKTT  +     M+ W+   +       
Sbjct: 51  VMAALIEIFGDKIDPNWISVKRKAVMTGGIGIGKTTFASIVLPYMVHWVYCLKDPQDFFG 110

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           +A         +     +   +L     F      +  S W+          + +     
Sbjct: 111 LAPGSKIAFMMMSTSEKQATEVL-----FGDVKARVENSPWFERRCPYDPKFEKQLRFAK 165

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASG--------TPDIINKSILGFFTE------- 217
              +              + +    DE             +    +I             
Sbjct: 166 KNLWILPGGSEETRFEGYNILGGVIDEGDSHKKTARKDYAEEGYDTIHSRIESRFMDHKA 225

Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFN--IPLEDWKRYQIDTRTVEGI-----DSGFHEGII 270
                  I+   T+   G+   ++N  +   D    ++      G      +    +   
Sbjct: 226 GKFKGILILIGQTKSATGFMRRMYNEFMKEPDAAAIRMSIWESYGWHRYTENPDDEKNYR 285

Query: 271 SRYGLDSDVARIEILGQFPQQEVNN 295
                 S V  +       +++ + 
Sbjct: 286 ETAPRKSFVYDVMRKEIIKKEDADA 310


>gi|156044530|ref|XP_001588821.1| hypothetical protein SS1G_10369 [Sclerotinia sclerotiorum 1980]
 gi|154694757|gb|EDN94495.1| hypothetical protein SS1G_10369 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1515

 Score = 41.1 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 45/152 (29%), Gaps = 21/152 (13%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI-STRPGMS 109
           P  +QLE +E                     ++   G GKT +    +L  +    P   
Sbjct: 107 PRTYQLEMLEE-------------SLKGNIIVAMDTGSGKTHVAVLRILAELERMEPDKL 153

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I  +A +       L  + +++L +       ++   S     W  +    ++  D K  
Sbjct: 154 IWFLAPTVA-----LCTQHNEYLQLNISSVLVKLLVGSDGVDRWTEQRQWDAILKDVKIA 208

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
               +   +     F          +  DEA 
Sbjct: 209 VSPYQVLLDALAHGF--VRMERLSLIIFDEAH 238


>gi|22537994|ref|NP_688845.1| prophage LambdaSa2, terminase large subunit [Streptococcus
           agalactiae 2603V/R]
 gi|22534895|gb|AAN00718.1|AE014275_26 prophage LambdaSa2, terminase large subunit, putative
           [Streptococcus agalactiae 2603V/R]
          Length = 570

 Score = 41.1 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 36/277 (12%), Positives = 70/277 (25%), Gaps = 31/277 (11%)

Query: 11  LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70
            E+  +   +  +  L+    V     WG         + P       +E    +    +
Sbjct: 54  EEECSNTKGLAGKLRLALPQKVWLETTWGFYHTVEVTKTNPDT-----LEEYTDYEERRL 108

Query: 71  NNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP--GMSIICIANSETQLKNTLWAEV 128
            +  P      I   RG GKTTL + +           G  I  +A S  Q    L+   
Sbjct: 109 IHEVP------IIVPRGTGKTTLGSAIAEVGQIIDGEWGADIQLLAYSREQA-GYLFNAS 161

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
              LS       +  ++  L  +                    T  +    +   +    
Sbjct: 162 RAMLSNEESLLHYMREADILRST-------------KQGILYETTNSLMSIKTSDYESLD 208

Query: 189 NTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW 248
            T+      DE     D   K +          + WI    +         +F+     W
Sbjct: 209 GTNAHYNIFDEVHTYDDDFIKVVNDG--SSRKRKNWITWYISTNGTKR-DKLFDKYYNIW 265

Query: 249 KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
                D    + +   +   +     +       + +
Sbjct: 266 VDILDDKIINDSV-MPWIYQLDDVSEIHDPDMWQKAM 301


>gi|116206834|ref|XP_001229226.1| hypothetical protein CHGG_02710 [Chaetomium globosum CBS 148.51]
 gi|88183307|gb|EAQ90775.1| hypothetical protein CHGG_02710 [Chaetomium globosum CBS 148.51]
          Length = 1561

 Score = 41.1 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/119 (12%), Positives = 35/119 (29%), Gaps = 4/119 (3%)

Query: 38   WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97
            + ++  PL      +  Q +  + +  H  +   N  P   +  I  G G GK+ +   +
Sbjct: 1096 YDVEDMPLAARDTLNTQQRQVYDTIMRHFRAKNENRRPPPLRLQIDGGGGTGKSYMVKVI 1155

Query: 98   MLWL----ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSG 152
               L            I+  A +           +   L +    ++  +       + 
Sbjct: 1156 SSHLQAKAAFYGRPSPIVRAAPTGVASNQIGGQTLHSLLRLPVDGNYRSLSETPTTLNA 1214


>gi|299746105|ref|XP_001837738.2| hypothetical protein CC1G_06944 [Coprinopsis cinerea okayama7#130]
 gi|298406904|gb|EAU84082.2| hypothetical protein CC1G_06944 [Coprinopsis cinerea okayama7#130]
          Length = 1080

 Score = 41.1 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 59/187 (31%), Gaps = 19/187 (10%)

Query: 33  MRFFPWGIKGKPLEHFSQPHRWQLEFM---EAVDVHCHSNVNNSNPTIFKCAISAGRGIG 89
           + +FP   K KP  +  +  ++++E +     ++      V           +    G G
Sbjct: 339 LFWFPTWKKFKPPANSVRLDQYRVESVLHSAHLNDSQRKVVETIGSDERSIIVHGPPGTG 398

Query: 90  KTTLNAWMM-LWLISTRPGMSIICIANSETQLKNTLWAEVSK------WLSMLPHRHWFE 142
           KTT  A +  +W +   P   +  +A+S   +KN   A   +       +S   +  W E
Sbjct: 399 KTTTIAAISRIWDMHDCP---VWIVAHSNVAVKNIANALFKRDVDFKIIVSKEFYEEWHE 455

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSK----HYTITCRTYSEERPDTFVGPHNT--HGMAVF 196
              L++       + L        +       I     +   P               + 
Sbjct: 456 HLYLAIEAKLIRTDELPTDPVGLERVIGDSCVILSTLSTLSNPALDQNKMFELVPVERLI 515

Query: 197 NDEASGT 203
            DEAS  
Sbjct: 516 VDEASQI 522


>gi|298531187|ref|ZP_07018588.1| type III restriction protein res subunit [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509210|gb|EFI33115.1| type III restriction protein res subunit [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 978

 Score = 41.1 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 47/194 (24%), Gaps = 27/194 (13%)

Query: 42  GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101
           G   +   +P   Q    +                    A+ A  G+GKT L A    + 
Sbjct: 347 GTSKQSIIEPESIQPNVAQ--SEALEGLKKLRTRKARSGAVIAATGVGKTYLAA----FD 400

Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
                    + IA+ E  L+                R  F           +     + S
Sbjct: 401 FIQSGKDKCLFIAHREDILR--------------KARESFSHVLGPEGLEIFSGRSKDVS 446

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221
                    +     +  R       H      +  DE       +  +         P+
Sbjct: 447 Y----GSKAVFAMIQTLGRQGNMKRFHPREFDYIVMDEFH---HAMANTYRKVLDYFQPD 499

Query: 222 RFWIMTSNTRRLNG 235
               +T+   R++G
Sbjct: 500 FLLGLTATPERMDG 513


>gi|156976669|ref|YP_001447575.1| ATP-dependent RNA helicase [Vibrio harveyi ATCC BAA-1116]
 gi|156528263|gb|ABU73348.1| hypothetical protein VIBHAR_05443 [Vibrio harveyi ATCC BAA-1116]
          Length = 430

 Score = 41.1 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 73/272 (26%), Gaps = 38/272 (13%)

Query: 87  GIGKTTLNAWMMLWLIST------RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           G GKT   +  M+  +        R     + +A +          E+++ ++    + +
Sbjct: 48  GTGKTAAFSLPMIQQLLESGRSASRKTARALIMAPT---------RELAEQIADNI-KAY 97

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
            +   LS+       ++  Q   ++     +       E               +  DEA
Sbjct: 98  TKYTDLSVAAIFGGRKMSSQVTALEGGVDILVATPGRLEEHIEQGNVSVASIEFLVFDEA 157

Query: 201 SGTPDIIN--KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
               D+                 +  + ++ T               +  +  + +T   
Sbjct: 158 DRILDMGFIHAVRKIMMDVDTDPQIMMFSATTSSQLNLLAKDILRKPKRIEVERANTTAQ 217

Query: 259 EG------IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY----------- 301
                   +D      ++S      +  ++ +   + +   +                  
Sbjct: 218 TIAHVLYPVDQERKTELLSELIGRKNWKQVLVFVNYKETANDVVKELKLDGIKAVVCHGD 277

Query: 302 -IEEAMSREAID--DLYAPLIMGCDIAGEGGD 330
             + A  R   +     A +++  D+A  G D
Sbjct: 278 RAQSARRRALEEFKTGKARVMVATDVAARGLD 309


>gi|123509953|ref|XP_001329985.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121913036|gb|EAY17850.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 402

 Score = 41.1 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 60/234 (25%), Gaps = 23/234 (9%)

Query: 35  FFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN 94
             P  I       +S+P   Q + ++                    + +A  G GKT   
Sbjct: 8   VHPDIIAAVESMGWSKPTPIQEKTIKQAIAGED------------VSGAAETGSGKTGAF 55

Query: 95  AWMMLWLIS--TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSG 152
              +L  +    RP    I +A +   +     AEV++ +S        ++    +   G
Sbjct: 56  LIPLLHQLLEKDRPEKYGIILAPTRELVIQI--AEVAQLMS-------AKLNITIVPIYG 106

Query: 153 WYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212
              ++ + +      H  +       +      G        +  DEA     +     +
Sbjct: 107 GVDDVEQMAQLAKRPHIIVATPGRLAQLIRDAKGFDLKPVRVIVIDEADKMAAVEFFDDI 166

Query: 213 GFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFH 266
              T        IM  +                +         + V      + 
Sbjct: 167 SVITSNCAKTHQIMLFSATMPKDLEKFTALYSKKASIVELTSEKQVPQALQEYM 220


>gi|237736755|ref|ZP_04567236.1| PhoH family protein [Fusobacterium mortiferum ATCC 9817]
 gi|229420617|gb|EEO35664.1| PhoH family protein [Fusobacterium mortiferum ATCC 9817]
          Length = 438

 Score = 41.1 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 51/166 (30%), Gaps = 21/166 (12%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRP-GMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
             +  G G GKT L     L L+  +     I+         K+            L + 
Sbjct: 248 VTLVGGAGTGKTLLAIAAGLELVVEKKRYKKILIARPIIPMGKD------------LGYL 295

Query: 139 HWFEMQSLSLHPSGWYAELL-----EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
              E + L       +  +      ++    +     +      +  P T++   +    
Sbjct: 296 PGSEKEKLKPWMQPIFDNIDFLSEAKEDRAGEKVVEGLESMGMMKIEPLTYIRGRSIPKG 355

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
            +  DEA     +  K+I    T    +   I T + ++++  + D
Sbjct: 356 LIIIDEAQNLTPLEIKTI---VTRAGQDTKIIFTGDPQQIDNPYLD 398


>gi|212540008|ref|XP_002150159.1| DNA-directed DNA polymerase theta, putative [Penicillium marneffei
           ATCC 18224]
 gi|210067458|gb|EEA21550.1| DNA-directed DNA polymerase theta, putative [Penicillium marneffei
           ATCC 18224]
          Length = 943

 Score = 41.1 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 50/219 (22%), Gaps = 34/219 (15%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ   +                       +A  G GK+ +   +ML  +   P    I 
Sbjct: 155 PWQASCL---------LGRGHLTAEKNLLYTAPTGGGKSLVADVLMLRRVIDNPHRKAIL 205

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI-------- 164
           +      ++  L     KWL  +       + + +     W     E  +          
Sbjct: 206 VLPYVALVQEKL-----KWLRRIVQGVEKNIDTSASMKQPWKQPSKEIRVTGFFGGSKSR 260

Query: 165 ----DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI------INKSILGF 214
               D+     T    +          +      V  DE     D               
Sbjct: 261 ATWADTDIAICTIEKANALVNTAIEECNIDDLAVVVVDEIHMLDDDSRGYLLELMVTKLL 320

Query: 215 FTELNPNRF--WIMTSNTRRLNGWFYDIFNIPLEDWKRY 251
             + +          SNT+ L  W +  F+         
Sbjct: 321 LLQQDIQIIGMSATLSNTQLLADWIHASFHASTHRPVPI 359


>gi|190346274|gb|EDK38320.2| hypothetical protein PGUG_02418 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 847

 Score = 41.1 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 35/264 (13%), Positives = 67/264 (25%), Gaps = 27/264 (10%)

Query: 26  LSFKNFVMRFFPW-GIKGKP-LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS 83
              K  +   FP+ G    P ++   QP    ++ +       +  +           ++
Sbjct: 203 HHPK--LKDVFPYLGSLETPPVKRAPQPEGMNIKLLPFQLEGLNWLLQQEEGEFRGGILA 260

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
              G+GKT     + L  +S  P + +        Q KN +       L  +   H    
Sbjct: 261 DEMGMGKTIQTIALFLSDLSKGPNLVVGPTVA-LMQWKNEIEKHTKDGLLKVLLFHGANR 319

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
            +     S +   L   S+                         H+     V  DEA   
Sbjct: 320 ATDVKELSKYNVILTSFSVLESVFRKQNYGFKRKAGLVKEKSPLHSIEFYRVVLDEAHNI 379

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRL-----------------NGWFYDIFNIPLE 246
            D  + +           R W +T    +                  + +F        +
Sbjct: 380 KDRTSGTAKAANNLKCSKR-WCLTGTPLQNRIGEMYSLIRFMKLEPFHQYFCTKCECSSD 438

Query: 247 DWKRYQIDTRT----VEGIDSGFH 266
           +WK               + + F 
Sbjct: 439 EWKFSDWRHCDICGHSPMVHTNFF 462


>gi|318042785|ref|ZP_07974741.1| protoporphyrin IX magnesium chelatase subunit ChlD [Synechococcus
           sp. CB0101]
          Length = 707

 Score = 41.1 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 49/180 (27%), Gaps = 25/180 (13%)

Query: 80  CAISAGRGIGKTTLNAWM--------MLWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131
             I+ GRG GK+ L   +        +L L S  PG       N + Q  +       + 
Sbjct: 45  VVIAGGRGTGKSVLARGLHALLPPIDVLDLGSPTPGQPAPAALNIDPQRPDDWDEPTRRR 104

Query: 132 LSMLPHRH----WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187
           L+ L           +    + P+ +    L  +         +T    S +        
Sbjct: 105 LTELGADPSGDDTAALLPTKVIPAPFVQVPLGITEDRLVGSVDVTASLASGQAVFQPGLL 164

Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR-------------FWIMTSNTRRLN 234
              H   ++ DE +   D I   +L   +                     I T N     
Sbjct: 165 AEAHRGVLYVDELNLLDDNITNLLLAAVSSGENRIEREGLSLSHPCRCLLIATYNPEEGA 224


>gi|308499375|ref|XP_003111873.1| hypothetical protein CRE_29522 [Caenorhabditis remanei]
 gi|308268354|gb|EFP12307.1| hypothetical protein CRE_29522 [Caenorhabditis remanei]
          Length = 1041

 Score = 41.1 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 44/153 (28%), Gaps = 15/153 (9%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
              Q + +           +N       C+++AGRG GK+     + L         +I 
Sbjct: 255 TACQAKALLRFLDVITEKQSNVT-----CSLTAGRGRGKSAAV-GLSLAGAIAFGYTNIF 308

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             + S   LK      V  +          + Q  + +     A    ++  +    +  
Sbjct: 309 VTSPSPENLKTLFEFIVKGF-------DALDYQEHTDYELIQSANPEFKNCLVRVNVFRE 361

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
             +T     P             +  DEA+  P
Sbjct: 362 HKQTIQYISPTDVQKLG--QCELIVIDEAAAIP 392


>gi|255552113|ref|XP_002517101.1| ATP-dependent helicase NAM7, putative [Ricinus communis]
 gi|223543736|gb|EEF45264.1| ATP-dependent helicase NAM7, putative [Ricinus communis]
          Length = 882

 Score = 41.1 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 50/165 (30%), Gaps = 18/165 (10%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKT      +L L   R    I+  A S +   + L   + +  + +     F + + 
Sbjct: 422 GTGKTMTIVEAILQLYKNRKDTRILVCAPSNSAADHLLEKLLREKAANIRQNEIFRLNAT 481

Query: 147 SLHPSGWYAELLE-------------QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
           S       ++ +               S     +    T  +      +     H +H  
Sbjct: 482 SRPFGDIKSDYIRFCFFDELLFKCPPLSALRRYRIIISTFMSACYLYAEGVERGHFSH-- 539

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
            +F DEA    +  +   L      +     ++  + ++L    Y
Sbjct: 540 -IFLDEAGQASEPESMIPLSNLCGRD--TVVVLAGDPKQLGPVIY 581


>gi|167837009|ref|ZP_02463892.1| helicase, Snf2 family protein [Burkholderia thailandensis MSMB43]
          Length = 711

 Score = 41.1 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 41/166 (24%), Gaps = 26/166 (15%)

Query: 72  NSNPTIFKCAISAGR-------GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124
                    A+ AGR       G+GKT         L        ++ +  +   LK   
Sbjct: 119 PYQAEGALFAVRAGRALICDEMGLGKTVQAIAAAEILTRHFGVSKVLVVCPT--SLKYQW 176

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
            +E+ ++                         L+E+      + +     T  E+     
Sbjct: 177 QSEILRFSGRA--------------SRVVAGSLVERQNEYAEEDFCKI--TNYEKLKSDL 220

Query: 185 VGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
                     V  DEA    +  N         +      ++T   
Sbjct: 221 DMISAWEPELVIVDEAQRIKN-WNTIAAKALKRIGSPYAVVLTGTP 265


>gi|307188367|gb|EFN73136.1| DNA2-like helicase [Camponotus floridanus]
          Length = 1167

 Score = 41.1 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/234 (8%), Positives = 56/234 (23%), Gaps = 15/234 (6%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
            + +  ++ +    V  +        I    G GKT     ++   +    G S++  A+
Sbjct: 725 AKIISDLNENQQRAVLKALAANEYILIKGMPGTGKTQTLVALI--ELLQTLGSSVLITAH 782

Query: 116 SETQLKNTLWAEVSK---WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           + + + N L   + +   +L +   +    + +         +    +S+        I 
Sbjct: 783 THSAVDNLLLKLLERNIDFLRLGSTKQIHPLLTCKSEEYALASCDSPESLETLYNSKQIV 842

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232
             T                      DE++         +   ++       +I+  +   
Sbjct: 843 GVTCLGAYH---ALLRRRTFDVCVVDESAQIMQPT--VLRPLYSTR----KFILVGDPD- 892

Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
                                     +       +       +      +   G
Sbjct: 893 QLPPIVKNKTAARLGADESLFTRLDSDNNTVNLLKQYRMNGRIMRLANDVTYHG 946


>gi|301300723|ref|ZP_07206908.1| putative phage terminase, large subunit [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851661|gb|EFK79360.1| putative phage terminase, large subunit [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 590

 Score = 41.1 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 53/180 (29%), Gaps = 24/180 (13%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
             WQ   + ++    H +         +  +  GR  GKTTL + +  ++       G +
Sbjct: 111 QPWQHFIVGSMFGWVHRDTG--LRRFREGLVFVGRKNGKTTLESGLADYMAGFDGERGAN 168

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           +  +AN++ Q +  L+ E    +   P+     + +                +     + 
Sbjct: 169 VYFLANAQVQARK-LYDESKAMIEDSPYLAKRFVTT-------------RSEIRFPKTNS 214

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
           TI   +  +   D        +      DE     D    S +            +  S 
Sbjct: 215 TIVPMSAEKNNKD------GENVHFAVFDEIHEYKDYFLISAMKQARGARLQPLIMYIST 268


>gi|260582117|ref|ZP_05849911.1| DNA helicase II [Haemophilus influenzae NT127]
 gi|260094749|gb|EEW78643.1| DNA helicase II [Haemophilus influenzae NT127]
          Length = 727

 Score = 41.1 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 84/303 (27%), Gaps = 29/303 (9%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
            E ++ ++      V           + AG G GKT +    + WLI+         +A 
Sbjct: 5   AELLDGLNDKQREAVAAPLGNH---LVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAV 61

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
           + T   N   AE+   +     +H             W       +  +   H+      
Sbjct: 62  TFT---NKAAAEMRHRIQSTLAKHAQHQLFG-----MWIGTFHSIAHRLLRAHHLDVGLP 113

Query: 176 YSEERPDTFVGPHNTHGMAVF--NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233
              +  D+         +      DE +  P       +    +               +
Sbjct: 114 QDFQILDSEDQRRLIKRLLKLHNFDEKAF-PPKQACWYINNKKDEGLR--------PNDI 164

Query: 234 NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293
             +        ++ ++ YQ        +D       +        +       +F    V
Sbjct: 165 EDFNDRQEREWIKIYQIYQDTCDRAGLVDFAELLIRVYELFEKKPLILQRYQQRFQHILV 224

Query: 294 NNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
           + F   N I+     + +      +++  D      D++ +   RG  IE+I  +     
Sbjct: 225 DEFQDTNKIQYK-WIKILAGKTGKVMIVGD-----DDQS-IYGWRGAQIENIQKFLKDFK 277

Query: 354 QET 356
            ET
Sbjct: 278 AET 280


>gi|255082039|ref|XP_002508238.1| predicted protein [Micromonas sp. RCC299]
 gi|226523514|gb|ACO69496.1| predicted protein [Micromonas sp. RCC299]
          Length = 1901

 Score = 41.1 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 56/234 (23%), Gaps = 29/234 (12%)

Query: 45   LEHFSQPHRWQLEFM---EAVDVHCHSNVNNSNPTIF----KCAISAGRGIGKTTLNAWM 97
            L     P   + EF    E      +     +  T+F       + A  G GKT      
Sbjct: 966  LYPPENPELGRKEFFDLYEGKFEFFNKVQTQAFNTLFHSESNVLLGAPTGSGKTISAELA 1025

Query: 98   MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
            M+      PG  II IA  +  ++  +     K   +L ++   E+              
Sbjct: 1026 MMAAFRDHPGGKIIYIAPLKALVRERIEDWKGKLCKVL-NKKLVELTGDYTPDIRALQGA 1084

Query: 158  LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI---INKSILGF 214
                   +                             V  DE          I + I+  
Sbjct: 1085 DIIVCTPEKWDGISRQWQARSYVT---------KVSLVVIDEIHLLGADRGPILEVIVSR 1135

Query: 215  FTELNPNR--------FWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTVE 259
               ++                +N   L  W   +    P      ++   R V 
Sbjct: 1136 MRFISTRTERPVRIVGLSTALANANDLADWLGIEKQEGPKSGLFNFKPSVRPVP 1189


>gi|145641213|ref|ZP_01796793.1| DNA helicase II [Haemophilus influenzae R3021]
 gi|145274050|gb|EDK13916.1| DNA helicase II [Haemophilus influenzae 22.4-21]
          Length = 726

 Score = 41.1 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 84/303 (27%), Gaps = 29/303 (9%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
            E ++ ++      V           + AG G GKT +    + WLI+         +A 
Sbjct: 4   AELLDGLNDKQREAVAAPLGNH---LVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAV 60

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
           + T   N   AE+   +     +H             W       +  +   H+      
Sbjct: 61  TFT---NKAAAEMRHRIQSTLAKHAQHQLFG-----MWIGTFHSIAHRLLRAHHLDVGLP 112

Query: 176 YSEERPDTFVGPHNTHGMAVF--NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233
              +  D+         +      DE +  P       +    +               +
Sbjct: 113 QDFQILDSEDQRRLIKRLLKLHNFDEKAF-PPKQACWYINNKKDEGLR--------PNDI 163

Query: 234 NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293
             +        ++ ++ YQ        +D       +        +       +F    V
Sbjct: 164 EDFNDRQEREWIKIYQIYQDTCDRAGLVDFAELLIRVYELFEKKPLILQRYQQRFQHILV 223

Query: 294 NNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353
           + F   N I+     + +      +++  D      D++ +   RG  IE+I  +     
Sbjct: 224 DEFQDTNKIQYK-WIKILAGKTGKVMIVGD-----DDQS-IYGWRGAQIENIQKFLKDFK 276

Query: 354 QET 356
            ET
Sbjct: 277 AET 279


>gi|60099243|emb|CAH65452.1| hypothetical protein RCJMB04_38k15 [Gallus gallus]
          Length = 676

 Score = 41.1 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 55/209 (26%), Gaps = 29/209 (13%)

Query: 42  GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML-W 100
           G     F +P   QL+ +                      + A  G GKT + + + L  
Sbjct: 35  GLEAAGFHRPSPVQLKAI------------PLGRCGLDLIVQAKSGTGKTCVFSTIALDA 82

Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
           L+   P   ++ +A +          E++  +  +      +M+ L  H       L + 
Sbjct: 83  LLLDSPATQVLILAPT---------REIAVQIHAVITTIGIKMEGLECHVFIGGTPLSQD 133

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-----IINKSILGFF 215
            + +  K +         ++       +         DEA    +          I    
Sbjct: 134 KVRL-KKCHIAVGSPGRIKQLIELDYLNTASIRLFILDEADKLLEEGSFQEQINWIYSSL 192

Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIP 244
              N     +  +    L          P
Sbjct: 193 -PANKQMLAVSATYPESLANALTMYMREP 220


>gi|50760381|ref|XP_417996.1| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 767

 Score = 41.1 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 55/209 (26%), Gaps = 29/209 (13%)

Query: 42  GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML-W 100
           G     F +P   QL+ +                      + A  G GKT + + + L  
Sbjct: 35  GLEAAGFHRPSPVQLKAI------------PLGRCGLDLIVQAKSGTGKTCVFSTIALDA 82

Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
           L+   P   ++ +A +          E++  +  +      +M+ L  H       L + 
Sbjct: 83  LLLDSPATQVLILAPT---------REIAVQIHAVITTIGIKMEGLECHVFIGGTPLSQD 133

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-----IINKSILGFF 215
            + +  K +         ++       +         DEA    +          I    
Sbjct: 134 KVRL-KKCHIAVGSPGRIKQLIELDYLNTASIRLFILDEADKLLEEGSFQEQINWIYSSL 192

Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIP 244
              N     +  +    L          P
Sbjct: 193 -PANKQMLAVSATYPESLANALTMYMREP 220


>gi|322498208|emb|CBZ33283.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1065

 Score = 41.1 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 43/125 (34%), Gaps = 10/125 (8%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
           C ++AGRG GK+     M +     +   +IIC A +   +  TL+    + L  L +R 
Sbjct: 287 CVVTAGRGRGKSAAL-GMTIAGAIAQGYSNIICTAPTPENV-QTLFEFAIRGLKELGYRE 344

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             + ++L      +    +  ++  + +                              DE
Sbjct: 345 RTDFEALQGVSEEFAKCFIRINVFREHRQTVQFVSAA--------DTAKFAQAELCVIDE 396

Query: 200 ASGTP 204
           A+  P
Sbjct: 397 AAALP 401


>gi|312877336|ref|ZP_07737302.1| protein of unknown function DUF815 [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795899|gb|EFR12262.1| protein of unknown function DUF815 [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 469

 Score = 41.1 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 71/237 (29%), Gaps = 21/237 (8%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMR-FFPWGIKGKPLEHFSQPHRWQLEFM 59
           + + ++        L E L+       F  F     F W   G  L         +L+ +
Sbjct: 190 IEKFLNITPWS--SLIEELIEFHKQNGFGIFARYKGFSW--DGNNLVGIENLDPIRLDDL 245

Query: 60  EAVDVHCHSNVNNSNP-----TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
             ++      V N+        +    +   RG GK++    ++     +  G+ ++ + 
Sbjct: 246 VNIERQKKIVVENTLAFLNGKKVNNILLYGSRGSGKSSTVKALLNEF--SHRGLRVVEV- 302

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
             + QL    + ++ + L  +P +    +  LS          L+  +    +       
Sbjct: 303 -FKDQLYT--FPKLIRILRDVPLKFIIFVDDLSFEDIEENYTKLKAILEGSLEAMPQNVV 359

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
            Y+       V    +   +  +DE          ++    +  +     +   +  
Sbjct: 360 IYATSNRRHLVKERFSDRSSFSDDEVH-----WQDTLEEKLSLADRFGIIVTYPSPT 411


>gi|295402561|ref|ZP_06812510.1| DEAD/DEAH box helicase domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312112527|ref|YP_003990843.1| DEAD/DEAH box helicase [Geobacillus sp. Y4.1MC1]
 gi|294975409|gb|EFG51038.1| DEAD/DEAH box helicase domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311217628|gb|ADP76232.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y4.1MC1]
          Length = 465

 Score = 41.1 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 52/192 (27%), Gaps = 14/192 (7%)

Query: 87  GIGKTTLNAWMMLWLI-STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
           G GKT      ++  +  T   +  + +A +          E+ K  +         ++ 
Sbjct: 49  GTGKTAAFGIPLIEKVDVTNEAIQGLVVAPTRELAIQVS-EELYKIGA---------VKR 98

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTP 204
           + + P     ++  Q   +  + + I                H  +   V  DEA     
Sbjct: 99  VRVLPIYGGQDIGRQIRALKKRPHIIVGTPGRIIDHINRKTLHLENVHTVVLDEADEMLN 158

Query: 205 DIINKSILGFFTE-LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
                 I    +      +  + ++          + F +      + +    TV  I  
Sbjct: 159 MGFIDDIEAILSNVPEKRQTLLFSATMPEPIRRIAERF-MNEPQIVKVKAKEMTVPNIQQ 217

Query: 264 GFHEGIISRYGL 275
            + E    +   
Sbjct: 218 YYLEVQEKKKFD 229


>gi|294813351|ref|ZP_06771994.1| Type III restriction protein res subunit [Streptomyces clavuligerus
           ATCC 27064]
 gi|326441713|ref|ZP_08216447.1| nucleotide modification protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294325950|gb|EFG07593.1| Type III restriction protein res subunit [Streptomyces clavuligerus
           ATCC 27064]
          Length = 538

 Score = 41.1 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 18/178 (10%), Positives = 45/178 (25%), Gaps = 11/178 (6%)

Query: 60  EAVDVHCHSNVNNSNPTIF----KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
             +  H           ++    +  +    G+GKT     ++   +       ++ +A 
Sbjct: 135 YGLFPHQRRAAGKVRRLLYSGERRTVLHLPTGVGKTRTGMDLICDHLRQHEPTLVVWLAR 194

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
               L+     E  +  + L +R   E+    +               +           
Sbjct: 195 GRELLEQAAL-EFERAWASLGNR---EVTVARMWGDAPTDLDDITDGIVVLGLEKAGAAA 250

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233
            S       +            DEA        + ++   T  + +    +T+   R 
Sbjct: 251 KSTPGFLDQLALR---TTLTVFDEAHQAIAPTYRRVVEALTLRSDSSLLGLTATPGRT 305


>gi|224756704|gb|ACN62375.1| ATP dependent RNA helicase Hel61p [Leishmania tarentolae]
          Length = 545

 Score = 41.1 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 45/177 (25%), Gaps = 20/177 (11%)

Query: 43  KPLEHFSQPH---RWQLEFMEAV----DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95
            PL  F +     RW  E +  +                         A  G GKT   A
Sbjct: 89  TPLNSFEELRDAPRWLAEGLRTLKYPSTTDIQKFTIPLLAEGHDAIGLAPTGSGKTVAFA 148

Query: 96  WMMLWLISTRPGMS--IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
              L      P  +  ++ +A +   ++ T      K    L        ++        
Sbjct: 149 VPALAGFKPNPDGTPSVLVLAPTRELVQQTT-----KVFQNLGCGQVRVCEA------YG 197

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS 210
            A    Q+  + +    +       +           +   +  DEA    D+  + 
Sbjct: 198 GAPRDLQARRLRNGCDVLVACPGRLKDFLDGGEVSLRNLSFLVFDEADRLLDMGFQV 254


>gi|254388739|ref|ZP_05003972.1| type III restriction enzyme [Streptomyces clavuligerus ATCC 27064]
 gi|197702459|gb|EDY48271.1| type III restriction enzyme [Streptomyces clavuligerus ATCC 27064]
          Length = 542

 Score = 41.1 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 18/178 (10%), Positives = 45/178 (25%), Gaps = 11/178 (6%)

Query: 60  EAVDVHCHSNVNNSNPTIF----KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
             +  H           ++    +  +    G+GKT     ++   +       ++ +A 
Sbjct: 139 YGLFPHQRRAAGKVRRLLYSGERRTVLHLPTGVGKTRTGMDLICDHLRQHEPTLVVWLAR 198

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
               L+     E  +  + L +R   E+    +               +           
Sbjct: 199 GRELLEQAAL-EFERAWASLGNR---EVTVARMWGDAPTDLDDITDGIVVLGLEKAGAAA 254

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233
            S       +            DEA        + ++   T  + +    +T+   R 
Sbjct: 255 KSTPGFLDQLALR---TTLTVFDEAHQAIAPTYRRVVEALTLRSDSSLLGLTATPGRT 309


>gi|146083626|ref|XP_001464793.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134068887|emb|CAM59821.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 1065

 Score = 41.1 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 43/125 (34%), Gaps = 10/125 (8%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
           C ++AGRG GK+     M +     +   +IIC A +   +  TL+    + L  L +R 
Sbjct: 287 CVVTAGRGRGKSAAL-GMTIAGAIAQGYSNIICTAPTPENV-QTLFEFAIRGLKELGYRE 344

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             + ++L      +    +  ++  + +                              DE
Sbjct: 345 RTDFEALQGVSEEFAKCFIRINVFREHRQTVQFVSAA--------DTAKFAQAELCVIDE 396

Query: 200 ASGTP 204
           A+  P
Sbjct: 397 AAALP 401


>gi|317177484|dbj|BAJ55273.1| Type IIG restriction-modification enzyme [Helicobacter pylori F16]
          Length = 1016

 Score = 41.1 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 65/233 (27%), Gaps = 47/233 (20%)

Query: 5   ISTDQKLEQELHEMLMHAECVL------SFKNFVMRFFPWGIKG-------KPLEHFSQP 51
           IST       L E+    +         S ++F+     W            PL    +P
Sbjct: 114 ISTSNLSSNALEEIEQIRKSKGIDIVEISEEDFIYSQIDWEKFDPTQTQGELPLCDKKKP 173

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
              Q+E ++A   +  +  N          I A  G GKT  +    L ++        +
Sbjct: 174 RPHQIEAIKATKEYFSNPKNTRGK-----LIMAC-GTGKTYTS----LKIMEALEPKITL 223

Query: 112 CIANSETQLKNTLWAEVSKWLS---------------------MLPHRHWFEMQSLSLHP 150
            +A S   L    + E ++  +                                 L L P
Sbjct: 224 FLAPSIALLSQ-TFREYAQEKNDPFYASIVCSDDKVGKGKKNKNDDDTDDINFSELPLKP 282

Query: 151 SGWYAELLEQSMGI--DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
           S    ++L        ++KH+ I     S  R              V  DEA 
Sbjct: 283 STSPEDILSVYEKAQKENKHFIIFSTYQSALRIKEAQEVGLGEIDLVICDEAH 335


>gi|167750895|ref|ZP_02423022.1| hypothetical protein EUBSIR_01879 [Eubacterium siraeum DSM 15702]
 gi|167656074|gb|EDS00204.1| hypothetical protein EUBSIR_01879 [Eubacterium siraeum DSM 15702]
          Length = 812

 Score = 41.1 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 21/187 (11%), Positives = 39/187 (20%), Gaps = 15/187 (8%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
               L  FS       +    +   C +   N         +    G GKT       + 
Sbjct: 240 LDNKLSKFSGSDSLISKLRMNISDRCCAFAKNDVGI---VQLIVPTGGGKTLSALRFAIE 296

Query: 101 LISTRPGMSIICIANSETQLKNT--LWAEV----------SKWLSMLPHRHWFEMQSLSL 148
                    I  I+   + L+    +  E+          S   S +        + ++ 
Sbjct: 297 YAVEHKKERIFYISPFMSILEQNGDVIREIAGDDNYLEHHSDMYSKIIDNKHKSKEEVND 356

Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208
               +          +          T    R +     H      +  DE    P    
Sbjct: 357 ELEDYELRCRHWDKQVICTTMVQFFDTLFSSRTEALRRMHRFTDSVIIIDEVQSIPIRCV 416

Query: 209 KSILGFF 215
                  
Sbjct: 417 YLFNLAM 423


>gi|126643947|ref|XP_001388153.1| SWI/SNF-related, matrix associated, actin-dependent regulator of
           chromatin subfamily A containing DEAD/H box 1
           [Cryptosporidium parvum Iowa II]
 gi|126117230|gb|EAZ51330.1| SWI/SNF-related, matrix associated, actin-dependent regulator of
           chromatin subfamily A containing DEAD/H box 1
           [Cryptosporidium parvum Iowa II]
          Length = 807

 Score = 41.1 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 42/152 (27%), Gaps = 13/152 (8%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMS----IICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
           G+GKT   A   +WL            +I        L +    EVS W    P     +
Sbjct: 221 GLGKT---AQTCVWLQYLFDSGKLVKPVIISCP--ASLLDNWTKEVSIW---APRIRAVK 272

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
                        +L E+           T +  S +        H      +  DEA  
Sbjct: 273 YHGSQKERRQIADQLFEEYEESRVDVIITTFQMLSNKMDINMAFKHFE-FSYMIVDEAHN 331

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
             +  ++       ++   R  ++T      +
Sbjct: 332 IKNSASQRYKSMSRKIQSERKLLLTGTPISNS 363


>gi|67624283|ref|XP_668424.1| SWI/SNF-related, matrix associated, actin-dependent regulator of
           chromatin subfamily A containing DEAD/H box 1
           [Cryptosporidium hominis TU502]
 gi|54659629|gb|EAL38197.1| SWI/SNF-related, matrix associated, actin-dependent regulator of
           chromatin subfamily A containing DEAD/H box 1
           [Cryptosporidium hominis]
          Length = 807

 Score = 41.1 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 42/152 (27%), Gaps = 13/152 (8%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMS----IICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
           G+GKT   A   +WL            +I        L +    EVS W    P     +
Sbjct: 221 GLGKT---AQTCVWLQYLFDSGKLVKPVIISCP--ASLLDNWTKEVSIW---APRIRAVK 272

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
                        +L E+           T +  S +        H      +  DEA  
Sbjct: 273 YHGSQKERRQIADQLFEEYEESRVDVIITTFQMLSNKMDINMAFKHFE-FSYMIVDEAHN 331

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
             +  ++       ++   R  ++T      +
Sbjct: 332 IKNSASQRYKSMSRKIQSERKLLLTGTPISNS 363


>gi|298245680|ref|ZP_06969486.1| DEAD/DEAH box helicase domain protein [Ktedonobacter racemifer DSM
           44963]
 gi|297553161|gb|EFH87026.1| DEAD/DEAH box helicase domain protein [Ktedonobacter racemifer DSM
           44963]
          Length = 882

 Score = 41.1 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 56/233 (24%), Gaps = 23/233 (9%)

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
                   +         ++A  G GKT L A   +WL   R G  II        L N 
Sbjct: 18  DDFQLESVSHLLDGRSVMVAAPTGTGKT-LVAEFAVWLAQKR-GQRIIYTTP-LKALSNQ 74

Query: 124 LWAEVSKWLS----MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
            + ++ +        L      E    S+       E+    +  D     +        
Sbjct: 75  KYRDMRELYGYDNVGLVTGDIVEHSHASI--VIMTTEVYRNMLLEDGGERFVNG------ 126

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPD-----IINKSILGFFTELNPNRFWIMTSNTRRLN 234
             +            V  DE     D     +  ++I+     +         SN   L 
Sbjct: 127 --ERLDASELRDVGFVVFDELHYLSDFDRGPVWEEAIICSPKHVQLVGLSATVSNAEDLA 184

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
            W   +       +   +                +    G   +     + G+
Sbjct: 185 SWISRVHRPISLVFHEQRAVPLEHYYYYGDKIHLVQDAEGNRVNRFP-RVGGE 236


>gi|269965041|ref|ZP_06179206.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269830344|gb|EEZ84569.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 675

 Score = 41.1 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 67/248 (27%), Gaps = 40/248 (16%)

Query: 40  IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFK--CAISAGRGIGKTTLNAWM 97
            + KPL       + + E       H  S +        K    ++A RG GKT+     
Sbjct: 133 EQDKPLPTAPDIKQAEKESHYTEQEHAISLIEKVVTGHRKRPLVLTADRGRGKTSALGIA 192

Query: 98  MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
              L+  +P + I+  A S   ++          L +LP+        L           
Sbjct: 193 CASLLQQKP-LRILITAPSIKAVEPVYQH----ALRLLPNAQRIRKDRLE---------- 237

Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217
                         + +   +      +         +  DEA+  P       +     
Sbjct: 238 --------------SGQGSIQFIAPDELLLSRPECDLLLVDEAAAIP-------VPMLKS 276

Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277
           +  +   ++ S T          F I   DW + Q      +               L+S
Sbjct: 277 ITEHYHRLVFSTTIHGYEGCGRGFTIKFVDWLQKQRSGM--KTWHMTQPIRWSMNDALES 334

Query: 278 DVARIEIL 285
            +    +L
Sbjct: 335 WLYDAFLL 342


>gi|257456356|ref|ZP_05621553.1| DNA translocase ftsk [Treponema vincentii ATCC 35580]
 gi|257446442|gb|EEV21488.1| DNA translocase ftsk [Treponema vincentii ATCC 35580]
          Length = 1078

 Score = 41.1 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 39/336 (11%), Positives = 81/336 (24%), Gaps = 27/336 (8%)

Query: 44   PLEHFSQPHRWQLEFMEAVDVHCHSNVNN-SNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102
             L     P   ++    A+      N             I+   G GK+     ++L ++
Sbjct: 723  ELIETDLPEAAKMAIPVALGKDVTGNPQVLDLAQTPHLLIAGATGSGKSVCVNSIILSIL 782

Query: 103  STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
              R    +  I      ++  L+ +++  L+ +        Q+L                
Sbjct: 783  YNRRPDEVKLILVDPKIVELKLYNDIAHLLTPVITEPKRAFQALQYALCEMERRYALLDN 842

Query: 163  GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT-----E 217
                   T   +  SE      +       + +  DE +       K +           
Sbjct: 843  MGVRDIKTFNAKIKSERIATEALP-----YIVIIIDEFADLMATSGKELEATVARLCAMS 897

Query: 218  LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277
                   ++ +    ++     I                    I        +   G   
Sbjct: 898  RAVGIHLVLATQRPSIDVITGLIKANIPSRIAFMVASKTDSRIILDEMGAEKLLGKGDML 957

Query: 278  DVARIEILGQFPQQEVNNFIPHNYIEE--AMSREAIDDLYAPLIMGC-------DIAGEG 328
             V+       FP +    F+    +E   A  +E  +  Y    +         D A   
Sbjct: 958  YVSAAR---PFPTRIQGAFVSEQEVERVVACVKEYCEPEYIDEEIFVDDDDEPYDNAVFS 1014

Query: 329  GDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGCPVG 364
             D   +          I  ++ K      Q    +G
Sbjct: 1015 DDNDPLY----EQALEIVTFAGKASASYVQRKLKIG 1046


>gi|229816677|ref|ZP_04446965.1| hypothetical protein COLINT_03725 [Collinsella intestinalis DSM
           13280]
 gi|229807729|gb|EEP43543.1| hypothetical protein COLINT_03725 [Collinsella intestinalis DSM
           13280]
          Length = 984

 Score = 41.1 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 54/187 (28%), Gaps = 37/187 (19%)

Query: 51  PHRWQLEFMEAVDV-HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           P++ Q + +EA+   H   +         +  + +  G GKT L+A+ +         + 
Sbjct: 241 PNKMQEKALEALAALHERRDP--------RALLVSATGTGKTYLSAFDVKAAA----PVR 288

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           ++ +A+     K  L A ++ +  +L   + + +                          
Sbjct: 289 VLFLAHR----KRILTASMASYKKLLGDNYTYGL-----------------YRAGGDGTE 327

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                                    +  DEA        + I        P     MT+ 
Sbjct: 328 FTCTFAMCSTICGYLDKIDAELFDYIVIDEAHRVGAKGYQRI---LEHFKPKFCLGMTAT 384

Query: 230 TRRLNGW 236
             R +G+
Sbjct: 385 PNRTDGY 391


>gi|195037008|ref|XP_001989957.1| GH19081 [Drosophila grimshawi]
 gi|193894153|gb|EDV93019.1| GH19081 [Drosophila grimshawi]
          Length = 2181

 Score = 41.1 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 48/177 (27%), Gaps = 24/177 (13%)

Query: 45   LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            L  F+  +  Q +    +    +              + A  G GKT +    +   ++ 
Sbjct: 1331 LYKFTHFNPIQTQIFHCLYHTDN-----------NVLLGAPTGSGKTIVAEIAIFRALNL 1379

Query: 105  RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
             P   ++ IA  +  +K      ++ W         FE   L L       ++    +  
Sbjct: 1380 DPKCKVVYIAPLKALVKER----IADWQQR------FEQSELGLKVVELTGDV-TPDIRA 1428

Query: 165  DSKHYTITCRTYSEERPDTFVGPHN--THGMAVFNDEASGTPDIINKSILGFFTELN 219
              +   I       +         +   H   +  DE     +     I    +  N
Sbjct: 1429 IRESQLIVTTPEKWDGISRSWQTRDYVQHVALIVIDEIHLLGEDRGPVIEVIVSRTN 1485


>gi|159127927|gb|EDP53042.1| DEAD/DEAH box helicase, putative [Aspergillus fumigatus A1163]
          Length = 1796

 Score = 41.1 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 56/231 (24%), Gaps = 33/231 (14%)

Query: 25  VLSFKNFVMR---FFPWGIKGKPLEHFSQ--PHRWQLEFMEAVDVHCHSNVNNSNPTIFK 79
            L F+ F +     F     G   +      P +WQ + ++ +D +              
Sbjct: 713 PLDFQAFQLLHCGPFMDRQTGAKPDDRVGFEPDKWQKDVLDELDKN------------HS 760

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT---LWAEVSKWLSMLP 136
             + A    GKT ++ + M  ++       ++ +A ++  +      + A   K  S   
Sbjct: 761 VFVVAPTSAGKTFISFYAMSKVLQEDDTGVLVYVAPTKALVNQIGAEIHARFRKRYSGPE 820

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
              W               ++L          + +     S     T+          + 
Sbjct: 821 QTVWAIATRDVRINDPLKCQILVTV------PHFLQIMLLSSANATTW----APRVKCII 870

Query: 197 NDEASGT--PDIINKSILGFFTELNPNR-FWIMTSNTRRLNGWFYDIFNIP 244
            DE       D                        N      W     N  
Sbjct: 871 FDEIHSIGHTDDGLVWEQLLLLAPCRIIALSATVGNPSEFADWLQSTQNNM 921


>gi|146323319|ref|XP_001481607.1| DEAD/DEAH box helicase [Aspergillus fumigatus Af293]
 gi|129558349|gb|EBA27477.1| DEAD/DEAH box helicase, putative [Aspergillus fumigatus Af293]
          Length = 1796

 Score = 41.1 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 56/231 (24%), Gaps = 33/231 (14%)

Query: 25  VLSFKNFVMR---FFPWGIKGKPLEHFSQ--PHRWQLEFMEAVDVHCHSNVNNSNPTIFK 79
            L F+ F +     F     G   +      P +WQ + ++ +D +              
Sbjct: 713 PLDFQAFQLLHCGPFMDRQTGAKPDDRVGFEPDKWQKDVLDELDKN------------HS 760

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT---LWAEVSKWLSMLP 136
             + A    GKT ++ + M  ++       ++ +A ++  +      + A   K  S   
Sbjct: 761 VFVVAPTSAGKTFISFYAMSKVLQEDDTGVLVYVAPTKALVNQIGAEIHARFRKRYSGPE 820

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
              W               ++L          + +     S     T+          + 
Sbjct: 821 QTVWAIATRDVRINDPLKCQILVTV------PHFLQIMLLSSANATTW----APRVKCII 870

Query: 197 NDEASGT--PDIINKSILGFFTELNPNR-FWIMTSNTRRLNGWFYDIFNIP 244
            DE       D                        N      W     N  
Sbjct: 871 FDEIHSIGHTDDGLVWEQLLLLAPCRIIALSATVGNPSEFADWLQSTQNNM 921


>gi|37523180|ref|NP_926557.1| phosphate starvation-inducible protein PhoH-like protein
           [Gloeobacter violaceus PCC 7421]
 gi|35214183|dbj|BAC91552.1| gll3611 [Gloeobacter violaceus PCC 7421]
          Length = 323

 Score = 41.1 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 39/148 (26%), Gaps = 17/148 (11%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKT L A   +  +  R    II    +  +    L        + +         +L
Sbjct: 137 GTGKTYLAAVQAVLALQERRVERIILTRPA-VEAGERLGFLPGDLQAKVSPYLRPLYDAL 195

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                               +   +  +   E  P  ++         V  DEA  T   
Sbjct: 196 YDFMEP-------------ERLMQLMEKGTIEVAPLAYMRGRTLSNAFVILDEAQNTTAE 242

Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLN 234
             K      T L      ++T +  + +
Sbjct: 243 QMKM---MLTRLGNASKMVVTGDPTQTD 267


>gi|218885832|ref|YP_002435153.1| phage uncharacterized protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756786|gb|ACL07685.1| phage uncharacterized protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 558

 Score = 41.1 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 48/367 (13%), Positives = 84/367 (22%), Gaps = 71/367 (19%)

Query: 19  LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78
             HA+    F  F   +FP   K       S  HRW  E +  +            P   
Sbjct: 48  KRHAQAQDDFVFFRRTYFPHYAKS---GGDSVLHRWLDEELPRIVA---------APEGV 95

Query: 79  KCAISAGRGIGKTTLNA-WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
           K A++A RG  K+T  A + +LW + T     ++ IA++  Q    L A   +  +    
Sbjct: 96  KLAVAAPRGEAKSTYVALFFVLWCVLTNRKKYLLLIADALEQAAALLEAVKVELEANPRI 155

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
              F   +           +   ++ + +       R      P                
Sbjct: 156 GMDFPDAAGQGRVWNVGTIVTRSNVKLQALGAGKRMRGLR-HGPHRPDLAVLDDLEN--- 211

Query: 198 DEASGTP--------------------DIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
           DE    P                    D     I         +               F
Sbjct: 212 DENVLKPEQRDKLQGWLQRTVLSLGPADDSMDVIYVGTILHYDSVLARTLQKPLWRGKRF 271

Query: 238 YDIFNIPL-----EDWKRYQIDT-------------------RTVEGIDSGFHEGIISRY 273
             +   P      + W+                           V          ++ + 
Sbjct: 272 RAVIRWPDRMDLWDRWEGILRAEGADAARAFHAANAADMERNAEVSWPSMRPLYKLMLKR 331

Query: 274 GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA----GEGG 329
             D      E     P    +           ++               D +    G G 
Sbjct: 332 AEDHAAFDAEQQND-PLSGDDAPFA-----ACITFWVDRRADWLFFGAVDPSLGKHGAGR 385

Query: 330 DKTVVVF 336
           D + ++ 
Sbjct: 386 DPSAILV 392


>gi|146092266|ref|XP_001470248.1| mitochondrial DEAD box protein [Leishmania infantum]
 gi|134085042|emb|CAM69443.1| putative mitochondrial DEAD box protein [Leishmania infantum JPCM5]
 gi|322500550|emb|CBZ35627.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 544

 Score = 41.1 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 46/177 (25%), Gaps = 20/177 (11%)

Query: 43  KPLEHFSQPH---RWQLEFMEAV----DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95
            PL  F +     RW  E ++ +                         A  G GKT   A
Sbjct: 89  TPLNSFEELRDAPRWLAEGLKTLKYPSTTDIQKFTIPLLADGHDVIGLAPTGSGKTVAFA 148

Query: 96  WMMLWLISTRPGMS--IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
              L      P  +  ++ +A +   ++ T      K    L        ++        
Sbjct: 149 VPALAGFKPNPDGTPSVLVLAPTRELVQQTT-----KVFQNLGCGQVRVCEA------YG 197

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS 210
            A    Q+  + +    +       +           +   +  DEA    D+  + 
Sbjct: 198 GAPRDLQARRLRNGCDALVACPGRLKDFLDGGDVSIRNLSFLVFDEADRLLDMGFQV 254


>gi|327461143|gb|EGF07476.1| prophage LambdaSa04 protein [Streptococcus sanguinis SK1057]
          Length = 530

 Score = 41.1 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 35/329 (10%), Positives = 77/329 (23%), Gaps = 54/329 (16%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ + +  +      + N    T +   +   +  GK+ L A     +           
Sbjct: 48  PWQEQIVRDLFGIVKEDGNRQFLTAY---VEIPKKNGKSELAAA----IALYLLYADGEA 100

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            A       +   A +            F++    +  S    +  +             
Sbjct: 101 SAEVYGAACDRNQASIV-----------FDVAKQMVLMSRALEKRSKVMGATKRIINYSN 149

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT-- 230
              Y     +T    H  +   +  DE    P+     +L   +     +       T  
Sbjct: 150 AGFYQVLSAETG-TKHGLNVSGLVFDEIHAQPNRHLYDVLTKGSGDAREQPLFFIITTAG 208

Query: 231 RRLNGWFYDIFNIP----------------------LEDW----KRYQIDTRTVEGIDSG 264
              N   Y++                           +DW       + +      I   
Sbjct: 209 NDKNSICYELHTKALDILKGRKKDSTFYPVVYGLSEEDDWNDEENWLKANPSLGHTIGID 268

Query: 265 FHEGIISRYGLDS---DVARIEILGQFPQQEVNNFIPHNYIEEA-MSREAIDDLYAPLIM 320
                      +    +V +   L  +    V  +IP +  ++     +           
Sbjct: 269 RVREAYLNALDNPAEENVFKQLRLNIWTNSAVT-WIPEHIYDKGSQEIDVESLKGRDCYA 327

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWS 349
           G D++    D T  V         + ++ 
Sbjct: 328 GLDLSST-SDITAFVLIFPPR-REVENYQ 354


>gi|255093167|ref|ZP_05322645.1| ATP-dependent RNA helicase [Clostridium difficile CIP 107932]
 gi|255314909|ref|ZP_05356492.1| ATP-dependent RNA helicase [Clostridium difficile QCD-76w55]
 gi|255517583|ref|ZP_05385259.1| ATP-dependent RNA helicase [Clostridium difficile QCD-97b34]
 gi|260683781|ref|YP_003215066.1| ATP-dependent RNA helicase [Clostridium difficile CD196]
 gi|260209944|emb|CBA63924.1| ATP-dependent RNA helicase [Clostridium difficile CD196]
          Length = 497

 Score = 41.1 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/235 (8%), Positives = 56/235 (23%), Gaps = 13/235 (5%)

Query: 60  EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI-STRPGMSIICIANSET 118
             +       V           + +  G GKT   A  +   I      +  + +  +  
Sbjct: 23  YNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTASFAIPLCENINVDCNNIQALIVVPTRE 82

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
                   E+S    +   R        S+               +  + + +       
Sbjct: 83  LALQV-KDEISDIGRLKKVRCSAIFGKQSIKDQIA---------ELKQRVHIVVATPGRI 132

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNT-RRLNGW 236
                       +   +  DEA         + +      L   +   + S T      +
Sbjct: 133 LDHINKGSIKLENVKYLVIDEADKMFNKGFVEQMEKILLNLPKEKIVSLFSATIDEEIKY 192

Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
             + + +        + ++ T +       + I +       + +  I  + P+ 
Sbjct: 193 ICEKYMLDYSVINIEENESDTNQKTRQIDDKIIKANGREKYILLKELIYSENPKS 247


>gi|198277095|ref|ZP_03209626.1| hypothetical protein BACPLE_03303 [Bacteroides plebeius DSM 17135]
 gi|198269593|gb|EDY93863.1| hypothetical protein BACPLE_03303 [Bacteroides plebeius DSM 17135]
          Length = 771

 Score = 41.1 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 45/326 (13%), Positives = 95/326 (29%), Gaps = 48/326 (14%)

Query: 7   TDQKLEQELHEMLMHAECVLSFKNFVMRFFP-WGIKGKPLEHFSQ---PHRWQLEFMEAV 62
           T ++ E +L       E    +            I   P  + +    P  +Q   ++  
Sbjct: 116 TGKETEIKLENFPTEEELYNRYLASKNYTSDELNIIETPFYYDAHSHEPRYYQRIAVDRT 175

Query: 63  DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN 122
                           +  +    G GKT     ++  L  +     I+ +A+     +N
Sbjct: 176 VEAIARGQQ-------RVLVVMATGTGKTFTAFQIIHRLHKSGAKKKILYLAD-----RN 223

Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182
            L  +    +        F  +  S+       ++        + ++ +  +   E +PD
Sbjct: 224 ILIDQT--MVQDFKPFKKFMTKITSV--GEGEEKIDSSYEVYIALYHQLVGK---EGKPD 276

Query: 183 TFVGPHNTHGMAVFNDEA---SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
            F+         +  DE    S   D   + +L +F+         MT+  +   G    
Sbjct: 277 PFLEVQPNFFDLIIVDECHRGSAKDDSAWRKVLEYFSSATQ---IGMTATPKADEG---- 329

Query: 240 IFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299
                        +D            +GI      D  +A   +   F   ++  + P 
Sbjct: 330 ----------ANNLDYFGEPVYTYSLLQGI-----QDGFLAPYRVTADFINVDLQGWTPD 374

Query: 300 NYIEEAMSREAIDDLYAPLIMGCDIA 325
               + + +E    LY    +G D+A
Sbjct: 375 EGEIDLLGKEIEQKLYQRQNIGRDLA 400


>gi|164657404|ref|XP_001729828.1| hypothetical protein MGL_2814 [Malassezia globosa CBS 7966]
 gi|159103722|gb|EDP42614.1| hypothetical protein MGL_2814 [Malassezia globosa CBS 7966]
          Length = 540

 Score = 41.1 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 40/150 (26%), Gaps = 12/150 (8%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
           E +  +  H      + +   +        G+GK+T  A +  WL+  R  + I      
Sbjct: 349 ELLATLPAHAVRGNVSPSLNPYSIGFVGVNGVGKSTNLAKVCFWLLQNRYRVLIAACDTF 408

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
            +     L   V     +    H       +    G  A +LE       K      +  
Sbjct: 409 RSGAVEQLRTHVRNLGELEVDGHRV-----ADGAPGTGAAMLELYERGYGKDAAGIAK-- 461

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                D      N     V  D A    D 
Sbjct: 462 -----DALAYARNEGFDVVLIDTAGRMQDN 486


>gi|39935629|ref|NP_947905.1| amino acid ABC transporter ATP-binding protein [Rhodopseudomonas
           palustris CGA009]
 gi|192291213|ref|YP_001991818.1| ABC transporter [Rhodopseudomonas palustris TIE-1]
 gi|39649482|emb|CAE28004.1| amino acid ABC transporter, ATP-binding protein aapP-1
           [Rhodopseudomonas palustris CGA009]
 gi|192284962|gb|ACF01343.1| ABC transporter related [Rhodopseudomonas palustris TIE-1]
          Length = 246

 Score = 41.1 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/192 (9%), Positives = 48/192 (25%), Gaps = 27/192 (14%)

Query: 42  GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101
             P+   +  ++W  EF      H   +++       +  I    G GK+TL     +  
Sbjct: 3   DTPIVSIAGLNKWYGEF------HVLRDISLDVARSERIVICGPSGSGKSTLI--RCINA 54

Query: 102 ISTRPGMSIIC----IANSETQLKNTLWAEVSKWLSMLPHRHWFE----MQSLSLHPS-G 152
           +       I+     +  +   +      EV                       +     
Sbjct: 55  LEEFQEGKIVVDGIDLGPTLKHVDEI-RREVGMVFQSFNLFPHLTVLENCTLAPIWVRNI 113

Query: 153 WYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH-------NTHGMAVFNDE--ASGT 203
              +    +M    +            +               + +   +  DE  ++  
Sbjct: 114 PKKDAEATAMKFLERVRIPDKANKYPGQISGGQQQRVAIARALSMNPKVMLFDEPTSALD 173

Query: 204 PDIINKSILGFF 215
           P+++ + +    
Sbjct: 174 PEMVKEVLDTMV 185


>gi|325261984|ref|ZP_08128722.1| CRISPR-associated helicase Cas3 domain protein [Clostridium sp. D5]
 gi|324033438|gb|EGB94715.1| CRISPR-associated helicase Cas3 domain protein [Clostridium sp. D5]
          Length = 713

 Score = 41.1 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 49/168 (29%), Gaps = 8/168 (4%)

Query: 77  IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN--TLWAEVSKWLSM 134
           +F+  +    G GKT  +    L          II +    + ++    +++E+    ++
Sbjct: 233 LFRLTV--PTGGGKTVASLAFALQHAVKNKLDRIIYVIPYTSIIEQNAKVFSEILGKNNV 290

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
           L +    +  S                  +          +    +       HN     
Sbjct: 291 LENHCNVDYDSEEE-LKPMQLAAENWDKPVVVTTNVQFFESLFANKSSKCRKLHNIANSV 349

Query: 195 VFNDEASGTPDIINKSILGFFTE---LNPNRFWIMTSNTRRLNGWFYD 239
           +  DEA   P+   K  +    E      +   + T+    L+ +F  
Sbjct: 350 IIFDEAQMLPNDYLKPCIAMMEELLKRYRSSIVLCTATQPALSQFFQK 397


>gi|192360930|ref|YP_001982918.1| CRISPR-associated helicase Cas3 domain-containing protein
           [Cellvibrio japonicus Ueda107]
 gi|190687095|gb|ACE84773.1| CRISPR-associated helicase Cas3 domain protein [Cellvibrio
           japonicus Ueda107]
          Length = 817

 Score = 41.1 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 30/251 (11%), Positives = 58/251 (23%), Gaps = 31/251 (12%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +  E    +  +C +N   S   ++   +    G GKT  +    L          II
Sbjct: 255 RNYVDELRREISNNCKNNAYKSQG-LYTLTV--PTGGGKTYASLRYALHHARHHGLERII 311

Query: 112 CIANSETQLKN--TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ--SMGIDSK 167
            I    + ++    +  E+ +  S           +L      W ++L+ +     I   
Sbjct: 312 YIIPYTSIIEQNAKVIREIVEHKSDTRPWVLEHHSNLEPEQQTWQSKLVSENWDAPIVLT 371

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN----KSILGFFTELNPNRF 223
                  T            H      +  DE    P          +       N    
Sbjct: 372 TMVQLLETLFSGGTKGVRRLHQLANSVLVFDEIQTLPINCVHIFCNVMNFLVQGCNTTAV 431

Query: 224 WIMTSNT------------------RRLNGWFYDIFNIPL--EDWKRYQIDTRTVEGIDS 263
               +                      L G F   F      + + + +    +   I +
Sbjct: 432 LCTATQPLLNELKCPEKGQLIVSEGNELAGDFNRHFVDLRRVDIYNQIKPGGWSAPEISA 491

Query: 264 GFHEGIISRYG 274
              E       
Sbjct: 492 LALEQFQKHGS 502


>gi|499204|gb|AAC14192.1| D-E-A-D box protein [Drosophila melanogaster]
          Length = 644

 Score = 41.1 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 38/141 (26%), Gaps = 4/141 (2%)

Query: 72  NSNPTIFK-CAISAGRGIGKTTLNAWMMLWLISTRPGMSI--ICIANSETQLKNTLWAEV 128
              P   +   +SA  G GKT   A  ++ L+S R    +  + +           +  +
Sbjct: 177 KPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVDCKVRALVVLPVAELALQV-YRVI 235

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
           S+  S          +   L           +          +T      +      G  
Sbjct: 236 SELCSKTELEVCLLSKQHKLEDEQEKLVEQYKGKYYSKADIVVTTPGRLVDHLHATKGFC 295

Query: 189 NTHGMAVFNDEASGTPDIINK 209
                 +  DEA    D + +
Sbjct: 296 LKSLKFLVIDEADRIMDAVFQ 316


>gi|17136666|ref|NP_476833.1| dead box protein 73D [Drosophila melanogaster]
 gi|12644178|sp|P26802|DDX51_DROME RecName: Full=Probable ATP-dependent RNA helicase Dbp73D;
           Short=DEAD box protein 73D
 gi|4972732|gb|AAD34761.1| unknown [Drosophila melanogaster]
 gi|7294064|gb|AAF49419.1| dead box protein 73D [Drosophila melanogaster]
 gi|33589494|gb|AAQ22514.1| LD27814p [Drosophila melanogaster]
          Length = 687

 Score = 41.1 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 38/141 (26%), Gaps = 4/141 (2%)

Query: 72  NSNPTIFK-CAISAGRGIGKTTLNAWMMLWLISTRPGMSI--ICIANSETQLKNTLWAEV 128
              P   +   +SA  G GKT   A  ++ L+S R    +  + +           +  +
Sbjct: 177 KPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVDCKVRALVVLPVAELALQV-YRVI 235

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
           S+  S          +   L           +          +T      +      G  
Sbjct: 236 SELCSKTELEVCLLSKQHKLEDEQEKLVEQYKGKYYSKADIVVTTPGRLVDHLHATKGFC 295

Query: 189 NTHGMAVFNDEASGTPDIINK 209
                 +  DEA    D + +
Sbjct: 296 LKSLKFLVIDEADRIMDAVFQ 316


>gi|327289195|ref|XP_003229310.1| PREDICTED: u5 small nuclear ribonucleoprotein 200 kDa helicase-like
            [Anolis carolinensis]
          Length = 1724

 Score = 41.1 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/161 (13%), Positives = 44/161 (27%), Gaps = 15/161 (9%)

Query: 54   WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +Q +F     +     + V NS+  +F   + A  G GK+    + +L ++        +
Sbjct: 1321 YQDKFPFFNPIQTQVFNTVYNSDENVF---VGAPTGSGKSICAEFAILRMLLQNSEGRCV 1377

Query: 112  CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             I   E   +        K+   L  +        S          +  S     + + I
Sbjct: 1378 YITPMEALAEQIFLDWYEKFQERLLKKVVLLTGETSTDLKLLVKGNIIIS---TPEKWDI 1434

Query: 172  TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212
              R +           +  +      DE           + 
Sbjct: 1435 LSRRWK-------QRKNVQNVNLFIVDEVHLIGGENGPVLE 1468


>gi|323508306|emb|CBQ68177.1| related to INO80-ATPase with chromatin remodeling and helicase
            activity [Sporisorium reilianum]
          Length = 1910

 Score = 41.1 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 54/230 (23%), Gaps = 31/230 (13%)

Query: 53   RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GMS 109
             +QL+ +  +       +N               G+GKT  +  +M +L           
Sbjct: 1005 EYQLKGLNWLANLYEQGINGILADEM--------GLGKTVQSISLMAYLAEVHDIWGPFL 1056

Query: 110  IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
            +I  A++          E+SK++  L    ++           +      + +  +    
Sbjct: 1057 VIAPASTLHN----WQQEISKFVPTLKALPYWGNVKDRAVLRKF---WNRKQISYNRDAP 1109

Query: 170  TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                 T  +                +  DEA                  N     ++T  
Sbjct: 1110 FHVLVTSYQLVVSDEKYFQRVKWQYMILDEAQAIKSSS-SIRWKTLLGFNCRNRLLLTGT 1168

Query: 230  TRRLNGWFYDIFNIPLEDW---KRYQIDTRTVEGIDSGFHEGIISRYGLD 276
                      + N   E W                 S +    I  +   
Sbjct: 1169 P---------VQNSMQELWALLHFIMPSLFDSHDEFSEWFSKDIESHAEQ 1209


>gi|312793794|ref|YP_004026717.1| hypothetical protein Calkr_1611 [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180934|gb|ADQ41104.1| protein of unknown function DUF815 [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 440

 Score = 41.1 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 71/237 (29%), Gaps = 21/237 (8%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMR-FFPWGIKGKPLEHFSQPHRWQLEFM 59
           + + ++        L E L+       F  F     F W   G  L         +L+ +
Sbjct: 161 IEKFLNITPWS--SLIEELIEFHKQNGFGIFARYKGFSW--DGNNLVGIENLDPIRLDDL 216

Query: 60  EAVDVHCHSNVNNSNP-----TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
             ++      V N+        +    +   RG GK++    ++     +  G+ ++ + 
Sbjct: 217 VNIERQKKIVVENTLAFLNGKKVNNILLYGSRGTGKSSTVKALLNEF--SHRGLRVVEV- 273

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
             + QL    + ++ + L  +P +    +  LS          L+  +    +       
Sbjct: 274 -FKDQLYT--FPKLIRILRDVPLKFIIFVDDLSFEDIEENYTKLKAILEGSLEAMPQNVV 330

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
            Y+       V    +   +  +DE          ++    +  +     +   +  
Sbjct: 331 IYATSNRRHLVKERFSDRSSFSDDEVH-----WQDTLEEKLSLADRFGIIVTYPSPT 382


>gi|167522693|ref|XP_001745684.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776033|gb|EDQ89655.1| predicted protein [Monosiga brevicollis MX1]
          Length = 2142

 Score = 41.1 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/187 (11%), Positives = 45/187 (24%), Gaps = 17/187 (9%)

Query: 80   CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
              + A  G GKT      +L     RP    + +A ++          +    +    R 
Sbjct: 1344 VFVGAPTGSGKTVCAELTLLRAFGLRPDSKAVYVAATQA---------ICDQTAAAW-RD 1393

Query: 140  WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             F  +      S       +  +         T   +           H         DE
Sbjct: 1394 LFGAKLGKTVVSLTGDSSADLKLVGRGDLIVATAEQWDVISRRWKQRRHVQAVNLYIVDE 1453

Query: 200  AS-------GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252
            A           +I++  +     +L      +  ++             I   +   + 
Sbjct: 1454 AHLLGGDKGPVLEIVSSRMRYMSIQLEKPVRIVCLASPVANAKEMAAWLGITSSNVFNFH 1513

Query: 253  IDTRTVE 259
             + R V 
Sbjct: 1514 PNVRPVP 1520


>gi|308274532|emb|CBX31131.1| hypothetical protein N47_E46430 [uncultured Desulfobacterium sp.]
          Length = 632

 Score = 41.1 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 51/166 (30%), Gaps = 12/166 (7%)

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS-IICIANSETQLKNTLWAEVSKWLS 133
               +  I+ G G+GKT + A ++L  +  R  +  ++ I       +     E+ ++  
Sbjct: 269 SDRPRLLIADGVGVGKT-IEAGLILRELQARRDIRSVLIICPRPLVTERKWMNEMKRFEE 327

Query: 134 MLPHRHWF-------EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
              H           EM    + P      ++  S+  +   Y        + +      
Sbjct: 328 RFTHLDGGALRYCINEMDLEGVWPEQHQRVIVPYSLLDEVLLYGSGSDGKRKRKKGLLDL 387

Query: 187 PHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNT 230
                   V  DEA      D  +   + FF +        +T+  
Sbjct: 388 DPPPRFDLVIVDEAHHIRNQDTFSHKAVRFFCDH-AEAVIFLTATP 432


>gi|317127827|ref|YP_004094109.1| type III restriction protein res subunit [Bacillus cellulosilyticus
           DSM 2522]
 gi|315472775|gb|ADU29378.1| type III restriction protein res subunit [Bacillus cellulosilyticus
           DSM 2522]
          Length = 890

 Score = 41.1 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 67/260 (25%), Gaps = 37/260 (14%)

Query: 48  FSQP-HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
           F  P   +Q E ++ +D H  +   +         + A  G GKT L   +ML     R 
Sbjct: 10  FCHPWRSYQQEVLDHLDHHLANKHLH---------LVAPPGSGKTVLGLEVML-----RL 55

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
           G   + +A +   ++N   +   +       +  +    L                    
Sbjct: 56  GKPTLIVAPTLA-IRNQWVSRFVELFLQANEQPTWISTDLRNPKFITVTTYQGLHSIFQK 114

Query: 167 KHYTITCR----------TYSEERPDTFVGPH----NTHGMAVFNDEASGTPDIINKSIL 212
           K    T +          + SE  P           +     +  DEA        ++ L
Sbjct: 115 KGEKETSQDVIDDEEMDESSSEVDPTDKELAQQKLIDEQFQTLILDEAHHLRTSWWRTTL 174

Query: 213 GFFTELNPNRFWIMTSNTRRLNG--WFYDIFN-----IPLEDWKRYQIDTRTVEGIDSGF 265
            F  +L+      +T+      G   +              +      +       D  +
Sbjct: 175 SFRNKLHDPTVVSLTATPPYDVGKSEWDKYMELCGPIDEEIEVAALVKEGDLCPHQDYVW 234

Query: 266 HEGIISRYGLDSDVARIEIL 285
                 +     D    E  
Sbjct: 235 MSEPSKKEKEPIDTFHQEAE 254


>gi|210134874|ref|YP_002301313.1| type II R-M system protein [Helicobacter pylori P12]
 gi|210132842|gb|ACJ07833.1| type II R-M system protein [Helicobacter pylori P12]
          Length = 662

 Score = 41.1 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 51/198 (25%), Gaps = 35/198 (17%)

Query: 29  KNFVMRFFPWGIKG-------KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81
           ++F+     W            PL    +P   Q E +E    +  +  N          
Sbjct: 145 EDFIYSRIDWEKFDPTKTEDEIPLCDKKRPRPHQTEAIERTKEYFSNPKNARGK-----L 199

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML------ 135
           I A  G GKT  +    L ++        + +A S   L  T      +           
Sbjct: 200 IMAC-GTGKTYTS----LKIMEALDPKITLFLAPSIALLSQTFREYAQEKSEPFYASIVC 254

Query: 136 ----------PHRHWFEMQSLSLHPSGWYAELLEQSMGI--DSKHYTITCRTYSEERPDT 183
                           +   L +  S    ++L        ++K + I     S  R   
Sbjct: 255 SDDKVGKSKDEDNDDIKFSELPIKASTRLEDILSVHEKAQKENKRFIIFSTYQSALRIKE 314

Query: 184 FVGPHNTHGMAVFNDEAS 201
                      +  DEA 
Sbjct: 315 AQEAGLNGIDLIICDEAH 332


>gi|254431300|ref|ZP_05045003.1| magnesium chelatase ATPase subunit D [Cyanobium sp. PCC 7001]
 gi|197625753|gb|EDY38312.1| magnesium chelatase ATPase subunit D [Cyanobium sp. PCC 7001]
          Length = 714

 Score = 41.1 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 55/228 (24%), Gaps = 38/228 (16%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT----------LWAEVS 129
             I+ GRG GK+ L   +     +  P + ++ + ++  Q  N              E  
Sbjct: 48  VVIAGGRGTGKSVLARGL----HALLPPIDVLDLGSAPAQALNVDPRRPEDWDATIRERL 103

Query: 130 KWLSMLPHRHWFE-MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
           + L   P     + +    + P+ +    L  +         +T    S +         
Sbjct: 104 QQLGADPSGSAADALLPTRVIPAPFVQVPLGITEDRLVGSVDVTASLASGQAVFQPGLLA 163

Query: 189 NTHGMAVFNDEASGTPDIINKSILGFFTELNPNR-------------FWIMTSNTRRLN- 234
             H   ++ DE +   D I   +L                         I T N      
Sbjct: 164 EAHRGVLYVDELNLLDDSITNLLLAAVGSGENRIEREGLSLSHPCRCLLIATYNPEEGAV 223

Query: 235 -GWFYDIFNIP--------LEDWKRYQIDTRTVEGIDSGFHEGIISRY 273
                D F I         LE                  F        
Sbjct: 224 RDHLLDRFAIALSANQVLDLEQRVAITRSALDHAESSDSFRGRWQEET 271


>gi|150396555|ref|YP_001327022.1| phage terminase [Sinorhizobium medicae WSM419]
 gi|150028070|gb|ABR60187.1| phage Terminase [Sinorhizobium medicae WSM419]
          Length = 491

 Score = 41.1 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 32/283 (11%), Positives = 65/283 (22%), Gaps = 39/283 (13%)

Query: 77  IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136
           + +  +S  R  GKT L A ++L  +          +            A   +  +   
Sbjct: 15  VRRAILSVARKNGKTALIAAIVLAHL----------VGPVSEINGEIYSAATDREQAGQV 64

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
            +   ++             L+       +         Y     +     H  +     
Sbjct: 65  FKFCRQIVEADPELDAASGGLITVVPSTKTLVCKSNGSFYRALSAEAG-TKHGLNPSVWI 123

Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSN----TRRL------------NGWFYDI 240
            DE +   D     ++            I+ S                     +      
Sbjct: 124 YDELAQARDQELYEVMNTSQGARKEPLGIVISTQSPDPEHPLSKLVDDALAADDNTVLVH 183

Query: 241 FNIPLEDWKRYQIDTRTVEGI---------DSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
                +D                       D        +R        R   L Q   Q
Sbjct: 184 LYCAKDDADIMDETAWRAANPALSDFRSVDDLRALAVQATRMKTLESSFRNLYLNQRVDQ 243

Query: 292 EVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334
                IP +  +   + + +  L   + +G D++  G D T +
Sbjct: 244 NS-PLIPRSEWKACQTGDTLR-LGEKIYLGLDLSAVG-DLTAL 283


>gi|226290188|gb|EEH45672.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 1524

 Score = 41.1 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 35/118 (29%), Gaps = 3/118 (2%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKTT  A ++        G S++  + + T + N L       +  L      ++   
Sbjct: 1009 GTGKTTTIAHII--RALVSQGKSVLLTSYTHTAVDNILLKIKDDNIRTLRLGATTKIHPD 1066

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                +   A   +    +   +        +    +     +N        DEAS   
Sbjct: 1067 VQKFADLAATPKKTIEELRDIYENSLVVATTCLGINHP-IFNNRTFDYCIVDEASQIT 1123


>gi|225682750|gb|EEH21034.1| DNA-binding protein SMUBP-2 [Paracoccidioides brasiliensis Pb03]
          Length = 1492

 Score = 41.1 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 35/118 (29%), Gaps = 3/118 (2%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKTT  A ++        G S++  + + T + N L       +  L      ++   
Sbjct: 977  GTGKTTTIAHII--RALVSQGKSVLLTSYTHTAVDNILLKIKDDNIRTLRLGATTKIHPD 1034

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                +   A   +    +   +        +    +     +N        DEAS   
Sbjct: 1035 VQKFADLAATPKKTIEELRDIYENSLVVATTCLGINHP-IFNNRTFDYCIVDEASQIT 1091


>gi|222100309|ref|YP_002534877.1| ATP-dependent DNA helicase [Thermotoga neapolitana DSM 4359]
 gi|221572699|gb|ACM23511.1| ATP-dependent DNA helicase [Thermotoga neapolitana DSM 4359]
          Length = 649

 Score = 41.1 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 46/304 (15%), Positives = 89/304 (29%), Gaps = 22/304 (7%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
           E+  +P +  L F+E +D      V  S     +C + AG G GKT +  + + +L++  
Sbjct: 4   EYRIKPKKTDLSFLEDLDEEQRKAVVESEG---RCIVIAGPGSGKTRVITYKIAYLLANG 60

Query: 106 -PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
                I+ +  +    +  +          L          +  +    YA  +      
Sbjct: 61  VDPSRILLVTFTRAAAREMVERAKMVTGRELSEMLAGTFHHVCNYFLRKYAPYVGLDRNY 120

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
                  +       R                       P ++          L   R  
Sbjct: 121 SILDREDSESLMRHARSKFLERKGREERKNF------PQPSVLMSIYSYMRNTLKSLRES 174

Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
           I+  N +     F D      E +  Y+ + R+   +D       + R   +    R   
Sbjct: 175 IIVKNPK-----FLDFKEEIAEIFDLYEQEKRSQNVVDYEDLLFFVYRLFEEHREIRDRE 229

Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEH 344
             +F    V+ F   NY++  M            ++       G D   +   RG   E+
Sbjct: 230 AERFLWVLVDEFQDTNYVQYRMIEHLSSRHGN--VLAV-----GDDAQSIYSFRGARYEN 282

Query: 345 IFDW 348
           + D+
Sbjct: 283 VEDF 286


>gi|269124787|ref|YP_003298157.1| DEAD/DEAH box helicase domain-containing protein [Thermomonospora
           curvata DSM 43183]
 gi|268309745|gb|ACY96119.1| DEAD/DEAH box helicase domain protein [Thermomonospora curvata DSM
           43183]
          Length = 562

 Score = 41.1 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/204 (12%), Positives = 45/204 (22%), Gaps = 28/204 (13%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI---S 103
            + +P   Q E +     H  +  +            A  G GKT   A  +L      +
Sbjct: 29  GYEEPTPIQREAI----PHLLAGRDLLG--------QAATGTGKTAAFALPILHRTPRPA 76

Query: 104 TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
             P    + +  +             ++   +  R           P    A +  Q   
Sbjct: 77  DEPDPGALVLVPTRELAVQVA-DAFHRYGREMGVRVL---------PVYGGAPIGRQIQV 126

Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFF--TELNP 220
           +      +                       V  DEA         + I      T    
Sbjct: 127 LKRGVDVVVATPGRALDLIDRDVLRLARLRTVVLDEADEMLDMGFAEDIEAILAQTPPQR 186

Query: 221 NRFWIMTSNTRRLNGWFYDIFNIP 244
                  +   R++G        P
Sbjct: 187 QTVLFSATVPPRIDGIARRHLREP 210


>gi|221117600|ref|XP_002163251.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
           [Hydra magnipapillata]
          Length = 790

 Score = 41.1 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 37/300 (12%), Positives = 82/300 (27%), Gaps = 33/300 (11%)

Query: 6   STDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKG-KPLEHFSQPHRWQLEFMEAVDV 64
              + L ++L   +M A+      +F    F   + G     ++S+P   Q + +     
Sbjct: 253 PAVKNLREKLGLKVMGADPARPAISFGHFGFDDHLMGVIRSSNYSKPTPIQSQAV----- 307

Query: 65  HCHSNVNNSNPTIFKCAISAGR-GIGKTTLNAWMMLWLISTRP------GMSIICIANSE 117
                         +  I   R G GKT    W ML  I  +P      G   +  A + 
Sbjct: 308 --------PVALSGRDIIGIARTGSGKTAAFVWPMLVHIMAQPVLKEGDGPIALICAPT- 358

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
                    E+ + ++    + + +  +L +          EQ+ G+      + C    
Sbjct: 359 --------RELCQQIN-SECKRFGKCYNLRVIACYGGGSKWEQTKGLQQGAEIVVCTPGR 409

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
                     +      +  DEA    D+  +  +             +  +        
Sbjct: 410 LIDLIKAKATNLLRVTYLVFDEADRMFDMGFEPQVRSIANNVRPDRQCLLFSATMKKKVE 469

Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297
           +   +I  +  +    +            E + S     + +    +  +F         
Sbjct: 470 WLCRDILSDPIRIVVGELGEANEDIVQAVEVMKSPQQKWNWLLSHIV--EFTSGGSVLIF 527


>gi|150865976|ref|XP_001385416.2| nucleotide excision repair protein [Scheffersomyces stipitis CBS
           6054]
 gi|149387232|gb|ABN67387.2| nucleotide excision repair protein [Scheffersomyces stipitis CBS
           6054]
          Length = 701

 Score = 41.1 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 39/344 (11%), Positives = 89/344 (25%), Gaps = 40/344 (11%)

Query: 28  FKNFVMRFFPW--GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAG 85
           F   +   FP+   ++  P+E   QP    ++ +       +      +       ++  
Sbjct: 57  FHPHLKDVFPYLASLERIPVERSPQPPSMNIKLLPFQLEGLNWLKKQEDGEFQGGILADE 116

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
            G+GKT     +    ++ RP + +                     L +L +        
Sbjct: 117 MGMGKTIQTIGLFTSDLTKRPNLVVGPTVALMQWKNEIEKHTEPGLLKVLLYHGANRTTD 176

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
           +               +    +      +  S    +     H      V  DEA    D
Sbjct: 177 VKELSKYDVILTSYSVLESVYRKENHGFKRKSGLVKEK-SALHAVEFYRVILDEAHNIKD 235

Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRL-----------------NGWFYDIFNIPLEDW 248
             + +           R W ++    +                  + +F    +   ++W
Sbjct: 236 RTSGTAKAANNLRCKKR-WCLSGTPLQNRIGEMYSLIRFMKMEPFHQYFCTKCDCKSDEW 294

Query: 249 KRYQIDTRT--------VEGIDSGFHEGIISRYGLDSD----VARIEILGQF-------P 289
           K                     + F    I ++G++ D       I +L Q         
Sbjct: 295 KFSDWRHCDQCGHAPMVHTNFFNHFMLKNIQKFGIEGDGLVSFQNIRLLLQNVMLRRTKI 354

Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTV 333
           ++  +  +P   +E    R   ++      +  D   +  D   
Sbjct: 355 ERADDLGLPPRIVEIRRDRFNEEEKDLYTSLYSDSKRKFNDYVA 398


>gi|149178000|ref|ZP_01856597.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797]
 gi|148843193|gb|EDL57559.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797]
          Length = 418

 Score = 41.1 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 37/311 (11%), Positives = 79/311 (25%), Gaps = 44/311 (14%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAI-------SAGRGIGKTTLNAWMMLWLI-STRPG 107
            + ++ +    +   +     +   A+        A  G GKT   +  +L  +   RPG
Sbjct: 24  EKILKDLSKAGYETPSPIQSELIPIAVTGQDCIGQARTGTGKTAAFSLPVLQQLDLRRPG 83

Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
           M  + +A +  +L   + AE+ K  +          +SLS+        +  Q   +   
Sbjct: 84  MQALILAPT-RELSEQVAAEIRKLCTS---------KSLSIAVLVGGKPVRPQENQLKKG 133

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK-SILGFF--TELNPNRFW 224
                                      V  DEA    DI  +  I               
Sbjct: 134 AQIAVGTPGRVIDHINRGNLQLGTLGFVVLDEADRMLDIGFRPDIEKILRKCPEKRQTLL 193

Query: 225 IMTSNTRRLNGWFYDIFNIP-----LEDWKRY----QIDTRTVEGIDSGFHEGIISRYGL 275
           +  +    +          P      ED        Q                ++  +  
Sbjct: 194 LSATLPPPVERLANRYMQNPVMIDLSEDKVSVDAIDQYYITVDPDRKIKLLSRLL--FQE 251

Query: 276 DSDVARIEILGQFPQQEVNNFIPHNYIE-EAMSREAIDDLYAPL-----------IMGCD 323
                 +    +    +++        E  A+  +        +           ++  D
Sbjct: 252 RPKQTIVFTRTKRGADKLDRIFSKKLKEVAAIHGDLPQPKRDRVLKKFREGKIRLLIATD 311

Query: 324 IAGEGGDKTVV 334
           + G G D + +
Sbjct: 312 VMGRGIDVSGI 322


>gi|226360800|ref|YP_002778578.1| hypothetical protein ROP_13860 [Rhodococcus opacus B4]
 gi|226239285|dbj|BAH49633.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 549

 Score = 41.1 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 38/142 (26%), Gaps = 5/142 (3%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  +  G G GKT L       L     G  +  I  S   L + L    + W      R
Sbjct: 221 RVEVRGGAGSGKTFLAVEKARRLAKQ--GQRVALICYS-HGLASYLERLTATW--SYKER 275

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
             +  +  +L       E  ++S+                        P      AV  D
Sbjct: 276 PAYVGEFHALGQLWGAPEGPDESIRNTDTVQFWEHDLPRHMAELASKLPLRERFDAVVVD 335

Query: 199 EASGTPDIINKSILGFFTELNP 220
           EA    D     +L    +   
Sbjct: 336 EAQDFADDWWGPLLAALRDEES 357


>gi|260587728|ref|ZP_05853641.1| putative helicase [Blautia hansenii DSM 20583]
 gi|331083983|ref|ZP_08333090.1| hypothetical protein HMPREF0992_02014 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541993|gb|EEX22562.1| putative helicase [Blautia hansenii DSM 20583]
 gi|330402345|gb|EGG81915.1| hypothetical protein HMPREF0992_02014 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 886

 Score = 41.1 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 33/257 (12%), Positives = 61/257 (23%), Gaps = 49/257 (19%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            R+Q   +   D +             K  I A  G GKTTL        +  R     +
Sbjct: 15  RRYQERVLNFSDAYLSDK---------KIHIVAAPGAGKTTLG-----IELIRRTQKPCL 60

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFE-MQSLSLHPSGWYAELLEQSMGIDSKHYT 170
            ++         +  E  +WL  +      E +    +  +      L  S+   +    
Sbjct: 61  ILSP------RIVIRE--QWLERIKDGFLNERLSPEDILSNDMKNPKLITSITYQTLFCG 112

Query: 171 IT-----CRTYSEERPDTFVGPHNT--------HGMAVFNDEASGTPDIINKSILGFFTE 217
           +T           E  +     H              +  DE     +   K++  F  E
Sbjct: 113 MTRYAGMTEEEETENQEAMDFSHFELLRTVKEAGIKVICLDECHHLKNEWWKALEDFMKE 172

Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277
           +       +T+                 E +          E       +        D 
Sbjct: 173 MGEVTVISLTATPPYDATPVQW------ERYCNM-CGPVDEEITVPELVKENSLCPHQD- 224

Query: 278 DVARIEILGQFPQQEVN 294
                 +   +P  E  
Sbjct: 225 -----FVYFNYPTGEEQ 236


>gi|91775571|ref|YP_545327.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
           KT]
 gi|91709558|gb|ABE49486.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
           KT]
          Length = 1053

 Score = 41.1 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 22/198 (11%), Positives = 44/198 (22%), Gaps = 17/198 (8%)

Query: 13  QELHEMLMHAECVLSFK--NFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70
           Q +   L      ++ +   FV      G   + L     P   Q   +           
Sbjct: 261 QMVENSLWTVTRAVNSRVTRFVRELVSRGRGDRALFEVLPP---QRRTLAE--------Q 309

Query: 71  NNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS--IICIANSETQLKNTLWAEV 128
                +     +S     GKT +  + ML  ++        ++ +A S   +        
Sbjct: 310 GLLGSSRRAVVVSLPTSSGKTLIAQFRMLQALNQFDDQKGWVVYLAPSRALVNQITRQLR 369

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
             +  +                        +       +    T   +       +    
Sbjct: 370 RDFQPLGVVVERVSPALEVNGIEAGLLAESQDDTQF--RVLVATPEKFDLMLRQGWEEKI 427

Query: 189 NTHGMAVFNDEASGTPDI 206
                 V  DEA    D 
Sbjct: 428 GRPLTLVVVDEAHTIQDK 445


>gi|331250710|ref|XP_003337961.1| hypothetical protein PGTG_19538 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309316951|gb|EFP93542.1| hypothetical protein PGTG_19538 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 1489

 Score = 41.1 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 46/171 (26%), Gaps = 42/171 (24%)

Query: 44  PLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS 103
           P +    P  +Q E +E                     I A  G GKT +   ++ W+ +
Sbjct: 15  PPDTMKIPRLYQAELLEE-------------AKKRNIIIRADTGTGKTFVALSLITWIAA 61

Query: 104 T----RPGMSI-ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
                     I   +A +           + K  ++    +  ++Q    +   W++EL 
Sbjct: 62  QSPANHDDHRIQAFLAPTRPLAHQQA-EYIQKHCTLRVKAYTGDLQPELWNIDKWHSELN 120

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209
           E  + + +                            +  DEA         
Sbjct: 121 EVDVIVST-----------------------AQVSLLIFDEAHHCRKNHIY 148


>gi|331236934|ref|XP_003331125.1| hypothetical protein PGTG_13088 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309310115|gb|EFP86706.1| hypothetical protein PGTG_13088 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 1465

 Score = 41.1 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 46/171 (26%), Gaps = 42/171 (24%)

Query: 44  PLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS 103
           P +    P  +Q E +E                     I A  G GKT +   ++ W+ +
Sbjct: 15  PPDTMKIPRLYQAELLEE-------------AKKRNIIIRADTGTGKTFVALSLITWIAA 61

Query: 104 T----RPGMSI-ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
                     I   +A +           + K  ++    +  ++Q    +   W++EL 
Sbjct: 62  QSPANHDDHRIQAFLAPTRPLAHQQA-EYIQKHCTLRVKAYTGDLQPELWNIDKWHSELN 120

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209
           E  + + +                            +  DEA         
Sbjct: 121 EVDVIVST-----------------------AQVSLLIFDEAHHCRKNHIY 148


>gi|241894907|ref|ZP_04782203.1| terminase large subunit [Weissella paramesenteroides ATCC 33313]
 gi|241871915|gb|EER75666.1| terminase large subunit [Weissella paramesenteroides ATCC 33313]
          Length = 604

 Score = 41.1 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 34/306 (11%), Positives = 78/306 (25%), Gaps = 29/306 (9%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109
             WQ   +  +                   +  GR  GKTT+ + + +++       G  
Sbjct: 113 QPWQHFVLGNIFGWVDKETGLRRFNEGLIFV--GRKNGKTTIQSGLAIYMAGFDGENGAE 170

Query: 110 IICIANSETQLKNTLWAEVSKW--LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
           +  +AN + Q    +   ++       L  R         +     ++ +L  S    SK
Sbjct: 171 VYALANMKAQAGRLVDETIAMIDASEFLKKRFKTTKSMHKVEHQRTHSTILSLSAEKHSK 230

Query: 168 HYTITCRTYSEERPDTFVGP----------HNTHGMAVFNDEASGTPDIINKSILGFFTE 217
               T     +E  +                    + V+   A    D            
Sbjct: 231 DGFNTSFAVFDEIHEYKDYELIEVMRRSMGQRMQPLTVYISTAGTVLDGPMTDFF----R 286

Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277
                      N    + ++Y      +++    ++  +    +       ++S Y  D 
Sbjct: 287 SGKETLEQYDENLNERS-FYYLAKIDDVKEADNPEMWIKANPNLPMMDGLSLLSNYKKDM 345

Query: 278 DVARIEIL------GQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLIMGCDIAGEGGD 330
              +            F +    + +    I       +  +      + G D++    D
Sbjct: 346 RTPQQRRDWITKQFNLFSESGEQSLLDAETILANNDEIDESELAGIHPVAGFDLSDT-ED 404

Query: 331 KTVVVF 336
            T    
Sbjct: 405 FTAAAL 410


>gi|38638456|ref|NP_943831.1| gp53 [Mycobacterium phage PG1]
 gi|33334071|gb|AAQ12130.1| gp53 [Mycobacterium phage PG1]
          Length = 559

 Score = 41.1 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 27/264 (10%), Positives = 66/264 (25%), Gaps = 28/264 (10%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q E +EA++ H    V        +  +    G GK+T+     +     R    ++
Sbjct: 2   RPYQREAVEAIESHWSQGVT-------RVGVVLPTGTGKSTVIGRTAVNGYQNREP--VL 52

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +A+    +             + P      +  +        A ++  ++   +  +  
Sbjct: 53  MVAHRGELIDQMAGTIF----EVDPSIPRSHVGIVRAEMDDHSAPIVVATLQTLATAHRR 108

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
               +        V      G      E  G  D +           +  +      +  
Sbjct: 109 EAVGFRRRILWDEVHHAGAEGFHTTFTELGGYTDALFAGFTATMRRDDKGK------SPV 162

Query: 232 RLNGWFYDIFNIPLEDW-----KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
            L      +       W        +    TV   +    + + +  G      +   L 
Sbjct: 163 GLGDVIEKVVYEKDILWAIDSGYLVRPRGLTVRINNLNALDDVRTVAGD----FQQSDLA 218

Query: 287 QFPQQEVNNFIPHNYIEEAMSREA 310
           +  +      +    +  A  R  
Sbjct: 219 EVMEAATEYVVDAIKLHAADRRPI 242


>gi|311696294|gb|ADP99167.1| UvrD/REP helicase [marine bacterium HP15]
          Length = 721

 Score = 41.1 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 41/282 (14%), Positives = 81/282 (28%), Gaps = 45/282 (15%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
             + AG G GKT +    + WL++    P   I+ +  +    K   +  + + + +   
Sbjct: 25  LLVLAGAGSGKTRVLVHRIAWLMTVDRVPPTGILAVTFTNKAAKEMRYR-IEQMMDIPAR 83

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF- 196
             WF          G +  +  + +    K             P+ F    +   + +  
Sbjct: 84  GLWF----------GTFHGIAHRLLRSHWK---------DAGLPENFQVLDSDDQLRLIK 124

Query: 197 -------NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
                   DE S  P    +  +    +       I                +I L+ ++
Sbjct: 125 RVMRENQIDE-SKWPPKQAQWFISSQKDEGLRVDHI-------QENPGDHFLSIMLKIYR 176

Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309
           +Y+   +    +D G          L           +F    V+ F   N I+ A    
Sbjct: 177 QYEKLCQQGGLVDFGELLLRSHELWLHRPELLAHYQSRFQHILVDEFQDTNTIQYA---W 233

Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
                   + M       G D   +   RG  +E+I  +   
Sbjct: 234 LQVLASNRVPMTV----VGDDDQSIYGWRGAKVENIQQYQRD 271


>gi|331247629|ref|XP_003336442.1| fanconi anemia complementation group M [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
 gi|309315432|gb|EFP92023.1| fanconi anemia complementation group M [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
          Length = 1587

 Score = 41.1 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 47/158 (29%), Gaps = 11/158 (6%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
            C +S   G+GKT + A +ML      P   +I +A +   ++  +  E    ++ +P  
Sbjct: 280 NCLVSLPTGLGKTFIAAVVMLNFYRWYPRGKVIFLAPTRPLVQQQI--EACHSIAGIPSV 337

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               +   +       A   ++ +    +      R  S               + +  D
Sbjct: 338 DCVSLTGTTSATKRAVAWENKRVIFATPQTVANDLRRGS---------LRPEDIICLVVD 388

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
           EA          I+          F ++       +  
Sbjct: 389 EAHRATGAYAYCIVVKLLMRFNPHFRVLALTATPGSDP 426


>gi|260579621|ref|ZP_05847490.1| helicase [Corynebacterium jeikeium ATCC 43734]
 gi|258602262|gb|EEW15570.1| helicase [Corynebacterium jeikeium ATCC 43734]
          Length = 967

 Score = 41.1 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 47/186 (25%), Gaps = 32/186 (17%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P+  Q E +E +                +  + +  G GKT L A  +           +
Sbjct: 216 PNAMQSEALEKI-------KQIRESNARRAVVISATGTGKTILAALSV----REAKPERM 264

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + I +   Q+ +    E  K L          + S       +                 
Sbjct: 265 LFIVH-REQILDKAILEFQKVLEAPAEDFGKLVGSTRQQDRRYV---------------- 307

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
                 S  R +            +  DE         ++ L       P     +T+  
Sbjct: 308 -FASIQSLSREENLQDFDPAAFDFIIVDE---VHRAGAETYLRTLEHFQPAFLLGLTATP 363

Query: 231 RRLNGW 236
            R +G+
Sbjct: 364 ERTDGF 369


>gi|156554507|ref|XP_001605046.1| PREDICTED: similar to ENSANGP00000013875 [Nasonia vitripennis]
          Length = 2105

 Score = 41.1 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/176 (11%), Positives = 48/176 (27%), Gaps = 23/176 (13%)

Query: 45   LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            L  F+  +  Q +    +    H              + A  G GKT      M+ +  +
Sbjct: 1269 LYKFTHFNPIQTQIFHCLYHTDH-----------NVLLGAPTGSGKTIAAEIAMMRVFRS 1317

Query: 105  RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS-MG 163
             P   ++ IA  +  ++  +      W   L  +    +  L+   +     +     + 
Sbjct: 1318 EPDRKVVYIAPLKALVRERM----KDWTKRLGGQLGKNVVELTGDVTPDVKVISTSDVIV 1373

Query: 164  IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
               + +    R++                  +  DE     +     +    +  N
Sbjct: 1374 TTPEKWDGISRSWQTRNYV-------QKVALIIIDEIHLLGEDRGPVLEVIVSRTN 1422


>gi|59711751|ref|YP_204527.1| DNA and RNA helicase [Vibrio fischeri ES114]
 gi|59479852|gb|AAW85639.1| DNA and RNA helicase [Vibrio fischeri ES114]
          Length = 431

 Score = 41.1 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/272 (9%), Positives = 70/272 (25%), Gaps = 38/272 (13%)

Query: 87  GIGKTTLNAWMMLWLIST------RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           G GKT   A  ++  +        R     + +A +    +                  +
Sbjct: 48  GTGKTAAFALPVIQQLLDSKKSATRRTARALILAPTRELAEQIAVNI----------ADY 97

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
            +  SL++       ++  Q   ++     +       +           +   +  DEA
Sbjct: 98  IKYTSLTVTSVFGGKKMSSQERALEPGVDILVATPGRLQEHIEEENVSIANLEFLVFDEA 157

Query: 201 S-GTPDIINKSILG-FFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
                     +I           +  + ++ +               +       +T   
Sbjct: 158 DRMLDMGFVNAIRNIMMEVNTSPQIMLFSATSSAQMNKLASDILRKPKRISVDPENTTAS 217

Query: 259 EGIDSGFHEGIISRYGLDSDV-----ARIEILGQFPQQEVNNFI-------------PHN 300
                 +      +  L S++      +  ++    ++  N  +               +
Sbjct: 218 TIAHVVYPVDEERKTELLSELIGRKNWQQVLVFVNYKETANEIVKELKLDGIKAVLCHGD 277

Query: 301 YIEEAMSREAID--DLYAPLIMGCDIAGEGGD 330
             + A  R   +  +  A +++  D+A  G D
Sbjct: 278 KAQSARRRALEEFKEGKARVMVATDVAARGLD 309


>gi|315618351|gb|EFU98939.1| type I site-specific deoxyribonuclease, HsdR family protein
           [Escherichia coli 3431]
          Length = 1028

 Score = 41.1 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 21/189 (11%), Positives = 53/189 (28%), Gaps = 7/189 (3%)

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICI---ANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
           +G GK+    W+  W+    P   ++ +      + Q+++                    
Sbjct: 275 QGSGKSLTMVWLAKWIRENVPNSRVLIVTDRTELDEQIESVFMGVNEDIYRTSSGNDLIA 334

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
             +    P    + + +     +++    T    +E +            + VF DE   
Sbjct: 335 TLNHPN-PWLICSLVHKFGRRSEAEDNAATDAFITELQQSLTKTFRAKGDLFVFVDECH- 392

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
                +  +    T + P+  +I  + T  +         +       Y+ D    +G+ 
Sbjct: 393 --RTQSGKLHNAMTAILPDALFIGFTGTPLMKKDKKKSVEVFGPYIHTYKFDEAVADGVV 450

Query: 263 SGFHEGIIS 271
                    
Sbjct: 451 LDLRYEARD 459


>gi|282856135|ref|ZP_06265419.1| phage terminase large subunit (GpA) [Pyramidobacter piscolens
           W5455]
 gi|282586062|gb|EFB91346.1| phage terminase large subunit (GpA) [Pyramidobacter piscolens
           W5455]
          Length = 608

 Score = 41.1 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 70/242 (28%), Gaps = 35/242 (14%)

Query: 10  KLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSN 69
              +EL  ++   +  +S          W  + + L+  S P     +       +    
Sbjct: 24  WTPRELRALVPPKKIDVS---------EWADRNRVLDAASSPMPGPWKTARTP--YLREI 72

Query: 70  VNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
           ++N      K  +   G  +GK+     ++ ++I   PG +++    ++   K+      
Sbjct: 73  LDNFRDRRLKKMVLCFGTQLGKSECILNLIGYVIDQDPGATLLVY-PTDQLAKSI----- 126

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
                   +R    + +       W  +  E         Y            ++     
Sbjct: 127 ------SKNRIAPMLINSPALLEKWNIDDSEILELQLQGMYLALV------GANSPSKLA 174

Query: 189 NTHGMAVFNDEASGTPDIINKSILGF-----FTELNPNRFWIMTSNTRRLNGWFYDIFNI 243
           +     +F DE    PD               T+   N   +M S+   ++G  +  F  
Sbjct: 175 SRPIRYLFYDEIDKFPDRSGGDANPIDLAAERTKNFANSRQVMASSPTVVSGAIWQNFLA 234

Query: 244 PL 245
             
Sbjct: 235 AR 236


>gi|260576816|ref|ZP_05844800.1| ATP-dependent DNA helicase, RecQ family [Rhodobacter sp. SW2]
 gi|259020959|gb|EEW24271.1| ATP-dependent DNA helicase, RecQ family [Rhodobacter sp. SW2]
          Length = 1415

 Score = 41.1 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 51/218 (23%), Gaps = 19/218 (8%)

Query: 10   KLEQELHEMLMHAECVLSFKNFVMRFFP--WGIK-GKPLEHFSQPHRWQLEFMEAVDVHC 66
              E  L  M         +       F   W    G  +   +    W    ++A+D   
Sbjct: 993  YAETGLEAMDQAQRLAGDYFVLDRDAFLRRWLPGRGTEIRRQTTGASW-RTIVDALDNPA 1051

Query: 67   HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS-TRPGMSIICIANSETQLKNTLW 125
             + +   +       + AG G GKT +    + +LI   R     I +            
Sbjct: 1052 QAEIVRDDREQTNVLVLAGPGSGKTRVLVHRIAYLIRVKREDPRGILVLTYNRHAA---- 1107

Query: 126  AEVSKWLSMLPHRHWF-----EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
            AE+ + L +L              +L++   G                          + 
Sbjct: 1108 AEIRERLRLLIGEDAAWVTVSTCHALAMRLVGASFAGDGDGPRDFDGIVMQAVALLRGDG 1167

Query: 181  PDTFVGPHNTHGMA-----VFNDEASGTPDIINKSILG 213
                        +      +  DE           I  
Sbjct: 1168 LSRPEAEALRDTLIQGYRWLLVDEYQDIGPEEYALISA 1205


>gi|256023437|ref|ZP_05437302.1| predicted type I site-specific deoxyribonuclease, HsdR family
           protein [Escherichia sp. 4_1_40B]
          Length = 1031

 Score = 41.1 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 21/189 (11%), Positives = 53/189 (28%), Gaps = 7/189 (3%)

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICI---ANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
           +G GK+    W+  W+    P   ++ +      + Q+++                    
Sbjct: 278 QGSGKSLTMVWLAKWIRENVPNSRVLIVTDRTELDEQIESVFMGVNEDIYRTSSGNDLIA 337

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
             +    P    + + +     +++    T    +E +            + VF DE   
Sbjct: 338 TLNHPN-PWLICSLVHKFGRRSEAEDNAATDAFITELQQSLTKTFRAKGDLFVFVDECH- 395

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
                +  +    T + P+  +I  + T  +         +       Y+ D    +G+ 
Sbjct: 396 --RTQSGKLHNAMTAILPDALFIGFTGTPLMKKDKKKSVEVFGPYIHTYKFDEAVADGVV 453

Query: 263 SGFHEGIIS 271
                    
Sbjct: 454 LDLRYEARD 462


>gi|149634448|ref|XP_001507983.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 20
           [Ornithorhynchus anatinus]
          Length = 729

 Score = 41.1 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 47/174 (27%), Gaps = 17/174 (9%)

Query: 77  IFKCAISAGRGIGKTTLNAWMMLW-LISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
           +    + A  G GKT + + + L  LI   P   I+ +A +          E++  +  +
Sbjct: 6   VSNLIVQAKSGTGKTCVFSTVALDSLILENPSTQILVLAPT---------REIAVQIHSV 56

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
                 +M+ L  H       L +    +  K +         ++       +       
Sbjct: 57  ITAIGIKMEGLECHVFIGGTPLSQDKSRL-KKCHIAVGSPGRIKQLIELDYLNTASIRLF 115

Query: 196 FNDEASGTPD-----IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244
             DEA    +          I       N     +  +    L          P
Sbjct: 116 ILDEADKLLEEGSFQEQINWIYSSL-PANKQMLAVSATYPEFLANALTRYMRDP 168


>gi|127513705|ref|YP_001094902.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126639000|gb|ABO24643.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 451

 Score = 41.1 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 30/280 (10%), Positives = 73/280 (26%), Gaps = 41/280 (14%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGM----SIICIANSETQLKNTLWAEVSKWLSMLPHR 138
            A  G GKT   ++++L  +  +P      S + +  +           +S++       
Sbjct: 44  CAQTGTGKTAAFSFVLLQRLLNQPRAIGQLSALILTPTRELAIQVA-DSISRY------S 96

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
            + E+ +L+++     A +  Q   +      +                       +  D
Sbjct: 97  QFTELTTLAVY---GGANINPQRKALARGVDILVATPGRLFDLLGQHDLSLETVDQLIVD 153

Query: 199 EASGTPDIIN----KSILGFFTELNPNRFWIMTSNT-------RRLNGWFYDIFNIPLED 247
           EA    D+      +         +    +  T          + L+   +         
Sbjct: 154 EADRMLDMGFVRDIERTKRLLCVSHSTMLFSATFTPEVKALATKMLDNPEWINVTSASSG 213

Query: 248 WKRYQIDTRTVEGIDSGFHEGIIS-----------RYGLDSDVARIEILGQFPQQEVNNF 296
            +  Q          +     +I                 ++    E+         N  
Sbjct: 214 PQIEQKIYPLDARRKAELLAELIGRNNWQQVLVFVNTKESAERLHRELK---LDGIKNAV 270

Query: 297 IPHNYIEEAMSREAIDDLYA--PLIMGCDIAGEGGDKTVV 334
              +  + A +R           +++  D+A  G D T +
Sbjct: 271 FHGDKTQGARNRALEQFKAGELRVLVATDVAARGLDITAL 310


>gi|312132702|ref|YP_004000041.1| superfamily ii RNA helicase [Bifidobacterium longum subsp. longum
           BBMN68]
 gi|311773662|gb|ADQ03150.1| Superfamily II RNA helicase [Bifidobacterium longum subsp. longum
           BBMN68]
          Length = 863

 Score = 41.1 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 64/263 (24%), Gaps = 26/263 (9%)

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
               +  N++        ++A  G GKT + A   ++L   R  +        +      
Sbjct: 48  DDFQTEANDALEAGSNVLVAAPTGAGKT-VVADFAIYLAQER-NVKAFYTTPIKALSNQK 105

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
               V  +    P +        S++       +  + +                ER  T
Sbjct: 106 YHDLVDVY---GPDKVGLLTGDTSINSEADIVVMTTEVLRN-----------MLYERSTT 151

Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM-TSNTRRLNGWFYDIFN 242
                      V  DE     D     +        P    I+  S T      F +   
Sbjct: 152 LNALR-----YVILDEVHYLADRFRGPVWEEVIIHLPKTVKIVGLSATVSNVEDFSNWIA 206

Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH--N 300
               D K    + R V        +          D+ R +  G+   +     I     
Sbjct: 207 SVRGDTKLVISEHRPVPLEQHVIVQADEHTEPEVLDLYRRDGNGEQTTKLNAELINRLDQ 266

Query: 301 YIEEAMSREAIDDLYAPLIMGCD 323
              +A  R   +        G D
Sbjct: 267 LDRKAARRRGEERPDKRK--GFD 287


>gi|307256343|ref|ZP_07538126.1| RNA polymerase-associated protein rapA [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306865169|gb|EFM97069.1| RNA polymerase-associated protein rapA [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 969

 Score = 41.1 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 29/261 (11%), Positives = 65/261 (24%), Gaps = 19/261 (7%)

Query: 33  MRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTI-FKCAISAGRGIGKT 91
                +         F  P R       ++  H           +  +  ++   G+GKT
Sbjct: 123 RFALRYRALQHQQAQFQSPLRGMRGIRASLIPHQLHIAKEVGQRVAPRVLLADEVGLGKT 182

Query: 92  TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151
                ++   + +     ++ +     Q +   W  V            F+ +  S    
Sbjct: 183 IEAGMILQQQLFSGRVERVLVLVPESLQHQ---W-LVEMLRRFNLKFSLFDEERCSDFDK 238

Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211
                        DS+   I    + E  P+       +H   +  DEA           
Sbjct: 239 ADEDGNDVSENPFDSEALVIASIDWLESSPNRAKQVLASHWDMLIVDEAHHL---EWSEN 295

Query: 212 LGFF-------TELNPNRFWIMTSNTR--RLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
                               ++T+          F  +  +  + +  Y  ++   E  D
Sbjct: 296 EPSVGYQFVERLSKQTPAVLLLTATPEQLGQESHFARLALLDADRF--YDYNSFVAEQKD 353

Query: 263 SGFHEGIISRYGLDSDVARIE 283
                  ++    D  ++  E
Sbjct: 354 YKPVADAVATLLNDKPLSNEE 374


>gi|229051372|ref|ZP_04194877.1| Tail tape measure protein [Bacillus cereus AH676]
 gi|228721941|gb|EEL73381.1| Tail tape measure protein [Bacillus cereus AH676]
          Length = 1586

 Score = 41.1 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 61/215 (28%), Gaps = 26/215 (12%)

Query: 122  NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
            +T W E+S W   +P +   ++       S W+ E  EQ++   ++       T+    P
Sbjct: 1043 DTWWTEMSNWFDSIPDKIKTKLIGWKDAISQWFDEQNEQNIIFYNQ-LWEAMSTWFSSIP 1101

Query: 182  DTFVGPHNTHGMAV--FNDEASGT----PDIINKSILGFFTE------LNPNRFWIMTSN 229
            +      +  G A+  + DE         +    SI  ++T            +W   S 
Sbjct: 1102 EKLRTKLSEWGTAISTWFDETVTLWGENLEKWWNSIAAWWTALPERMWEQLELWWTSIST 1161

Query: 230  TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG-----------FHEGIISRYGLDSD 278
                            + W        T+                 + +   +R+G + +
Sbjct: 1162 WFDQTTT--RWGENLEKWWNSIVTWWTTLPERMWEQLELWWTSISTWFDQTTTRWGENLE 1219

Query: 279  VARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
                 I   +       +        +++    + 
Sbjct: 1220 KWWNSISTWWTTLPDRMWEKLELWWNSIATWFDET 1254


>gi|170084045|ref|XP_001873246.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82]
 gi|164650798|gb|EDR15038.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82]
          Length = 1573

 Score = 41.1 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 25/276 (9%), Positives = 64/276 (23%), Gaps = 28/276 (10%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            +QL+ +  +       +N               G+GKT  +  ++ +L           
Sbjct: 738 EYQLKGLNWLATLYEQGINGILADEM--------GLGKTVQSISLLAYLAEAHDIWGPFL 789

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           +    + L N    E+++++  L    ++           +     ++ +  +       
Sbjct: 790 VVAPASTLHN-WQQELTRFVPNLKALPYWGNVKDRTTLRKF---WSKKEISYNQDAPFHV 845

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232
             T  +                +  DEA    +                   ++T     
Sbjct: 846 LITSYQLVTQDQQYFQRVKWQYMILDEAQNIKNSA-SVRWKTLLGFQCRNRLLLTGTP-- 902

Query: 233 LNGWFYDIFNIPLEDW---KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
                  I N   E W                 + +    I     +      E      
Sbjct: 903 -------IQNSMQELWALLHFIMPSLFDSHDEFNEWFSKDIENAAENKGSKLNEHQ---L 952

Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
           ++      P          +        + +  D++
Sbjct: 953 RRLHMILKPFMLRRVKKHVQNELSEKIEIDIYVDLS 988


>gi|320665547|gb|EFX32593.1| Helicase family protein [Escherichia coli O157:H7 str. LSU-61]
          Length = 952

 Score = 41.1 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 29/249 (11%), Positives = 60/249 (24%), Gaps = 40/249 (16%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
              +  I+   G+GKT     ++  LI    G  I+ +A     +      E        
Sbjct: 122 PRQRILIADAVGLGKTLEAGILVSELIRRGRGKRILVLAVK--SMLTQFQKEF------- 172

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH---NTHG 192
                F +    L  +G            +  HY        +         H   N   
Sbjct: 173 --WSRFAIPLTRLDSAGLQKVRNRIPTNHNPFHYFDKTIISIDTLKQDIEYRHHLENAWW 230

Query: 193 MAVFNDEASGTPDIINKSIL----GFFTELNPNRFWIMTS----------------NTRR 232
             +  DEA    +    S+           +     +  +                +   
Sbjct: 231 DIIVIDEAHNVAERGTSSLRSKLAKLLAGRSDTLIMLSATPHDGKAESFASLMNMLDPTA 290

Query: 233 LNGW-FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG-----IISRYGLDSDVARIEILG 286
           +     Y+  +   ++    +      + +   F E           G + +  R  +  
Sbjct: 291 IANPKEYEYADFADKNLVVRRFKKDVKDQMSGEFPERNIVKLTRLASGAEEEAYRRLVES 350

Query: 287 QFPQQEVNN 295
           QF   +   
Sbjct: 351 QFRDDDDEQ 359


>gi|320660619|gb|EFX28080.1| Helicase family protein [Escherichia coli O55:H7 str. USDA 5905]
          Length = 952

 Score = 41.1 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 29/249 (11%), Positives = 60/249 (24%), Gaps = 40/249 (16%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
              +  I+   G+GKT     ++  LI    G  I+ +A     +      E        
Sbjct: 122 PRQRILIADAVGLGKTLEAGILVSELIRRGRGKRILVLAVK--SMLTQFQKEF------- 172

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH---NTHG 192
                F +    L  +G            +  HY        +         H   N   
Sbjct: 173 --WSRFAIPLTRLDSAGLQKVRNRIPTNHNPFHYFDKTIISIDTLKQDIEYRHHLENAWW 230

Query: 193 MAVFNDEASGTPDIINKSIL----GFFTELNPNRFWIMTS----------------NTRR 232
             +  DEA    +    S+           +     +  +                +   
Sbjct: 231 DIIVIDEAHNVAERGTSSLRSKLAKLLAGRSDTLIMLSATPHDGKAESFASLMNMLDPTA 290

Query: 233 LNGW-FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG-----IISRYGLDSDVARIEILG 286
           +     Y+  +   ++    +      + +   F E           G + +  R  +  
Sbjct: 291 IANPKEYEYADFADKNLVVRRFKKDVKDQMSGEFPERNIVKLTRLASGAEEEAYRRLVES 350

Query: 287 QFPQQEVNN 295
           QF   +   
Sbjct: 351 QFRDDDDEQ 359


>gi|320644400|gb|EFX13465.1| Helicase family protein [Escherichia coli O157:H- str. 493-89]
 gi|320649718|gb|EFX18242.1| Helicase family protein [Escherichia coli O157:H- str. H 2687]
          Length = 952

 Score = 41.1 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 29/249 (11%), Positives = 60/249 (24%), Gaps = 40/249 (16%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
              +  I+   G+GKT     ++  LI    G  I+ +A     +      E        
Sbjct: 122 PRQRILIADAVGLGKTLEAGILVSELIRRGRGKRILVLAVK--SMLTQFQKEF------- 172

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH---NTHG 192
                F +    L  +G            +  HY        +         H   N   
Sbjct: 173 --WSRFAIPLTRLDSAGLQKVRNRIPTNHNPFHYFDKTIISIDTLKQDIEYRHHLENAWW 230

Query: 193 MAVFNDEASGTPDIINKSIL----GFFTELNPNRFWIMTS----------------NTRR 232
             +  DEA    +    S+           +     +  +                +   
Sbjct: 231 DIIVIDEAHNVAERGTSSLRSKLAKLLAGRSDTLIMLSATPHDGKAESFASLMNMLDPTA 290

Query: 233 LNGW-FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG-----IISRYGLDSDVARIEILG 286
           +     Y+  +   ++    +      + +   F E           G + +  R  +  
Sbjct: 291 IANPKEYEYADFADKNLVVRRFKKDVKDQMSGEFPERNIVKLTRLASGAEEEAYRRLVES 350

Query: 287 QFPQQEVNN 295
           QF   +   
Sbjct: 351 QFRDDDDEQ 359


>gi|313906357|ref|ZP_07839698.1| helicase domain protein [Eubacterium cellulosolvens 6]
 gi|313468821|gb|EFR64182.1| helicase domain protein [Eubacterium cellulosolvens 6]
          Length = 1190

 Score = 41.1 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 21/181 (11%), Positives = 54/181 (29%), Gaps = 11/181 (6%)

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS-IICIANSETQLKNT 123
                +        +  ++   G+GKT   A ++L  +  R  ++ ++ I       +  
Sbjct: 270 QFRPALKMIKADSPRILVADDVGVGKTI-EAGLILKEMEARSSINSVLIICPRPLVAERK 328

Query: 124 LWAEVSKW---LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID--SKHYTITCRTYSE 178
              E+ ++    + L  +   E  S +     W     +  +      +       + S+
Sbjct: 329 WELEMKRFDEDFTQLDGKELLECISETDRDGEWPERHRKTIIPYSLFGEDMLAGTESTSD 388

Query: 179 ERPDTFVGPHNT---HGMAVFNDEASGTPDIINKSILGF-FTELNPNRFWIMTSNTRRLN 234
           ++             H   V  DEA    +    +  G        +    +T+   + +
Sbjct: 389 KKRKQKGLMQLDPVPHFDLVIVDEAHNIRNSNTWAYQGVELFTRAADAVVFLTATPLQNS 448

Query: 235 G 235
            
Sbjct: 449 N 449


>gi|331665952|ref|ZP_08366846.1| ATP-dependent helicase [Escherichia coli TA143]
 gi|331057003|gb|EGI28997.1| ATP-dependent helicase [Escherichia coli TA143]
          Length = 952

 Score = 41.1 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 29/249 (11%), Positives = 60/249 (24%), Gaps = 40/249 (16%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
              +  I+   G+GKT     ++  LI    G  I+ +A     +      E        
Sbjct: 122 PRQRILIADAVGLGKTLEAGILVSELIRRGRGKRILVLAVK--SMLTQFQKEF------- 172

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH---NTHG 192
                F +    L  +G            +  HY        +         H   N   
Sbjct: 173 --WSRFAIPLTRLDSAGLQKVRNRIPTNHNPFHYFDKTIISIDTLKQDIEYRHHLENAWW 230

Query: 193 MAVFNDEASGTPDIINKSIL----GFFTELNPNRFWIMTS----------------NTRR 232
             +  DEA    +    S+           +     +  +                +   
Sbjct: 231 DIIVIDEAHNVAERGTSSLRSKLAKLLAGRSDTLIMLSATPHDGKAESFASLMNMLDPTA 290

Query: 233 LNGW-FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG-----IISRYGLDSDVARIEILG 286
           +     Y+  +   ++    +      + +   F E           G + +  R  +  
Sbjct: 291 IANPKEYEYADFADKNLVVRRFKKDVKDQMSGEFPERNIVKLTRLASGAEEEAYRRLVES 350

Query: 287 QFPQQEVNN 295
           QF   +   
Sbjct: 351 QFRDDDDEQ 359


>gi|300928441|ref|ZP_07143973.1| protein, SNF2 family [Escherichia coli MS 187-1]
 gi|300463558|gb|EFK27051.1| protein, SNF2 family [Escherichia coli MS 187-1]
          Length = 952

 Score = 41.1 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 29/249 (11%), Positives = 60/249 (24%), Gaps = 40/249 (16%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
              +  I+   G+GKT     ++  LI    G  I+ +A     +      E        
Sbjct: 122 PRQRILIADAVGLGKTLEAGILVSELIRRGRGKRILVLAVK--SMLTQFQKEF------- 172

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH---NTHG 192
                F +    L  +G            +  HY        +         H   N   
Sbjct: 173 --WSRFAIPLTRLDSAGLQKVRNRIPTNHNPFHYFDKTIISIDTLKQDIEYRHHLENAWW 230

Query: 193 MAVFNDEASGTPDIINKSIL----GFFTELNPNRFWIMTS----------------NTRR 232
             +  DEA    +    S+           +     +  +                +   
Sbjct: 231 DIIVIDEAHNVAERGTSSLRSKLAKLLAGRSDTLIMLSATPHDGKAESFASLMNMLDPTA 290

Query: 233 LNGW-FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG-----IISRYGLDSDVARIEILG 286
           +     Y+  +   ++    +      + +   F E           G + +  R  +  
Sbjct: 291 IANPKEYEYADFADKNLVVRRFKKDVKDQMSGEFPERNIVKLTRLASGAEEEAYRRLVES 350

Query: 287 QFPQQEVNN 295
           QF   +   
Sbjct: 351 QFRDDDDEQ 359


>gi|290974011|ref|XP_002669740.1| predicted protein [Naegleria gruberi]
 gi|284083291|gb|EFC36996.1| predicted protein [Naegleria gruberi]
          Length = 1143

 Score = 41.1 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 44/168 (26%), Gaps = 6/168 (3%)

Query: 64  VHCHSNVNNSNPTIFKCAISAGR-GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN 122
                     N   ++  I A   G+GKT   +   L  ++       + IA     +  
Sbjct: 267 EGIKWLNTRFNADKYRGGILADEMGLGKTVQVSAF-LGGLAQSKTRRYLIIAP--LSVLQ 323

Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182
           T  +E+ KW   +    +  + S   + S              +     T RT       
Sbjct: 324 TWASELDKWAPNIKTFVFHNLSSKEQYNSMARDFHGCAKQQKSA-AIITTFRTLVTYTVT 382

Query: 183 TFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
                          DEA    +     I     ++     + +T   
Sbjct: 383 LASLCAKQEFDITIVDEAHQIKNDQ-TGISKNLRKIGSRAKFCLTGTP 429


>gi|212638706|ref|YP_002315226.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
 gi|212560186|gb|ACJ33241.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
          Length = 426

 Score = 41.1 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 57/225 (25%), Gaps = 31/225 (13%)

Query: 31  FVMRFF-PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIG 89
           F    F P+ I+      F +P   Q   + AV                     +  G G
Sbjct: 2   FERFSFHPFIIEAIEHLKFHKPTPIQERVIPAVLRGES------------VIGQSQTGTG 49

Query: 90  KTTLNAWMMLWLISTRPGMSI-----ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
           KT      +L  I  R    +     +  A +        + EV K     P+ H     
Sbjct: 50  KTH---AYLL-PIIQRIDPRVAEVQAVITAPTRELATQI-YHEVLKITKFCPNDHRITA- 103

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                  G       + +         T     +   +  +  H      +  DEA    
Sbjct: 104 --RCFVGGTDKLRSIEKLKTQPHLVIGTPGRIDDLVREQALFVHTAR--MLVVDEADVML 159

Query: 205 DIINKSILGFFTELNPNRFWIMTSN---TRRLNGWFYDIFNIPLE 246
           D+   + +       P    ++  +     +L  +       P  
Sbjct: 160 DMGFIADVDRVAGRMPEDLQMLVFSATIPEKLKPFLKKYMEHPTH 204


>gi|208780086|ref|ZP_03247429.1| restriction modification system-R protein [Francisella novicida
           FTG]
 gi|208744090|gb|EDZ90391.1| restriction modification system-R protein [Francisella novicida
           FTG]
          Length = 372

 Score = 41.1 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 57/182 (31%), Gaps = 5/182 (2%)

Query: 49  SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108
                +Q++ +E    +    V             A  G GKT + A  +L+L       
Sbjct: 37  QHLRPYQIKALENFIFYNTDPVYKKIDNKHLLFHMA-TGSGKTNIIAATILYLYEQGYRD 95

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            I  + N++  +  T    + K+ S    +   ++    +  S   ++    ++   + +
Sbjct: 96  FIFFV-NTQNIITKTKANLIDKYSSKYLFKDTMQIDVNEITDSFDSSKSNSINIMFTTIN 154

Query: 169 YTI-TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
                     +E   ++    N        DEA        K      T+   NR W  T
Sbjct: 155 KLHGDLELLVKENSISYADFENRKIAL-IADEAHHLNSE-FKKGKATKTDEENNRSWSTT 212

Query: 228 SN 229
            N
Sbjct: 213 KN 214


>gi|158851710|gb|ABW82056.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 41.1 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALRGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|154500303|ref|ZP_02038341.1| hypothetical protein BACCAP_03970 [Bacteroides capillosus ATCC
           29799]
 gi|150271035|gb|EDM98309.1| hypothetical protein BACCAP_03970 [Bacteroides capillosus ATCC
           29799]
          Length = 1182

 Score = 41.1 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 22/179 (12%), Positives = 51/179 (28%), Gaps = 9/179 (5%)

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-SIICIANSETQLKNT 123
                +        +  ++   G+GKT + A +++  +  R G  S++ I       +  
Sbjct: 267 QFRPALKVIQAEQPRLLVADSVGVGKT-IEAGLIMKELQARSGAESVLIICPKPLVAERK 325

Query: 124 LWAEVSKW---LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID---SKHYTITCRTYS 177
              E+ ++    + +         S +     W     +  +                  
Sbjct: 326 WELEMKRFDETFTQMNSEDLRRAISDTHRDGVWPDRYRKAIVPYSILTGATLDGVSARRG 385

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF-FTELNPNRFWIMTSNTRRLNG 235
           ++    F          V  DEA    +    +  G  F   N N   ++T+   +   
Sbjct: 386 KKNYGLFDLDPAPQFDLVIVDEAHHIRNRSTLAYAGVEFFCRNANAVVLLTATPVQTGD 444


>gi|170021860|ref|YP_001726814.1| helicase domain-containing protein [Escherichia coli ATCC 8739]
 gi|169756788|gb|ACA79487.1| helicase domain protein [Escherichia coli ATCC 8739]
          Length = 952

 Score = 41.1 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 29/249 (11%), Positives = 60/249 (24%), Gaps = 40/249 (16%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
              +  I+   G+GKT     ++  LI    G  I+ +A     +      E        
Sbjct: 122 PRQRILIADAVGLGKTLEAGILVSELIRRGRGKRILVLAVK--SMLTQFQKEF------- 172

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH---NTHG 192
                F +    L  +G            +  HY        +         H   N   
Sbjct: 173 --WSRFAIPLTRLDSAGLQKVRNRIPTNHNPFHYFDKTIISIDTLKQDIEYRHHLENAWW 230

Query: 193 MAVFNDEASGTPDIINKSIL----GFFTELNPNRFWIMTS----------------NTRR 232
             +  DEA    +    S+           +     +  +                +   
Sbjct: 231 DIIVIDEAHNVAERGTSSLRSKLAKLLAGRSDTLIMLSATPHDGKAESFASLMNMLDPTA 290

Query: 233 LNGW-FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG-----IISRYGLDSDVARIEILG 286
           +     Y+  +   ++    +      + +   F E           G + +  R  +  
Sbjct: 291 IANPKEYEYADFADKNLVVRRFKKDVKDQMSGEFPERNIVKLTRLASGAEEEAYRRLVES 350

Query: 287 QFPQQEVNN 295
           QF   +   
Sbjct: 351 QFRDDDDEQ 359


>gi|15804878|ref|NP_290919.1| putative ATP-dependent helicase [Escherichia coli O157:H7 EDL933]
 gi|168749544|ref|ZP_02774566.1| helicase family protein [Escherichia coli O157:H7 str. EC4113]
 gi|168754866|ref|ZP_02779873.1| helicase family protein [Escherichia coli O157:H7 str. EC4401]
 gi|168760541|ref|ZP_02785548.1| helicase family protein [Escherichia coli O157:H7 str. EC4501]
 gi|168766575|ref|ZP_02791582.1| helicase family protein [Escherichia coli O157:H7 str. EC4486]
 gi|168773995|ref|ZP_02799002.1| helicase family protein [Escherichia coli O157:H7 str. EC4196]
 gi|168782811|ref|ZP_02807818.1| helicase family protein [Escherichia coli O157:H7 str. EC4076]
 gi|168784937|ref|ZP_02809944.1| helicase family protein [Escherichia coli O157:H7 str. EC869]
 gi|168797866|ref|ZP_02822873.1| helicase family protein [Escherichia coli O157:H7 str. EC508]
 gi|170683792|ref|YP_001746739.1| helicase family protein [Escherichia coli SMS-3-5]
 gi|195937309|ref|ZP_03082691.1| helicase domain-containing protein [Escherichia coli O157:H7 str.
           EC4024]
 gi|208806552|ref|ZP_03248889.1| helicase family protein [Escherichia coli O157:H7 str. EC4206]
 gi|208811987|ref|ZP_03253316.1| helicase family protein [Escherichia coli O157:H7 str. EC4045]
 gi|208818305|ref|ZP_03258625.1| helicase family protein [Escherichia coli O157:H7 str. EC4042]
 gi|209398792|ref|YP_002273828.1| helicase family protein [Escherichia coli O157:H7 str. EC4115]
 gi|217326570|ref|ZP_03442654.1| helicase family protein [Escherichia coli O157:H7 str. TW14588]
 gi|254796304|ref|YP_003081141.1| putative ATP-dependent helicase [Escherichia coli O157:H7 str.
           TW14359]
 gi|261226661|ref|ZP_05940942.1| putative ATP-dependent helicase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256952|ref|ZP_05949485.1| putative ATP-dependent helicase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291285686|ref|YP_003502504.1| Helicase family protein [Escherichia coli O55:H7 str. CB9615]
 gi|12519307|gb|AAG59485.1|AE005661_1 putative ATP-dependent helicase [Escherichia coli O157:H7 str.
           EDL933]
 gi|170521510|gb|ACB19688.1| helicase family protein [Escherichia coli SMS-3-5]
 gi|187770256|gb|EDU34100.1| helicase family protein [Escherichia coli O157:H7 str. EC4196]
 gi|188016143|gb|EDU54265.1| helicase family protein [Escherichia coli O157:H7 str. EC4113]
 gi|188999742|gb|EDU68728.1| helicase family protein [Escherichia coli O157:H7 str. EC4076]
 gi|189357770|gb|EDU76189.1| helicase family protein [Escherichia coli O157:H7 str. EC4401]
 gi|189363963|gb|EDU82382.1| helicase family protein [Escherichia coli O157:H7 str. EC4486]
 gi|189368951|gb|EDU87367.1| helicase family protein [Escherichia coli O157:H7 str. EC4501]
 gi|189375059|gb|EDU93475.1| helicase family protein [Escherichia coli O157:H7 str. EC869]
 gi|189379473|gb|EDU97889.1| helicase family protein [Escherichia coli O157:H7 str. EC508]
 gi|208726353|gb|EDZ75954.1| helicase family protein [Escherichia coli O157:H7 str. EC4206]
 gi|208733264|gb|EDZ81951.1| helicase family protein [Escherichia coli O157:H7 str. EC4045]
 gi|208738428|gb|EDZ86110.1| helicase family protein [Escherichia coli O157:H7 str. EC4042]
 gi|209160192|gb|ACI37625.1| helicase family protein [Escherichia coli O157:H7 str. EC4115]
 gi|217322791|gb|EEC31215.1| helicase family protein [Escherichia coli O157:H7 str. TW14588]
 gi|254595704|gb|ACT75065.1| putative ATP-dependent helicase [Escherichia coli O157:H7 str.
           TW14359]
 gi|290765559|gb|ADD59520.1| Helicase family protein [Escherichia coli O55:H7 str. CB9615]
 gi|320190583|gb|EFW65233.1| putative ATP-dependent helicase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320639030|gb|EFX08676.1| Helicase family protein [Escherichia coli O157:H7 str. G5101]
 gi|320654766|gb|EFX22735.1| Helicase family protein [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|326345385|gb|EGD69128.1| putative ATP-dependent helicase [Escherichia coli O157:H7 str.
           1125]
 gi|326346760|gb|EGD70494.1| putative ATP-dependent helicase [Escherichia coli O157:H7 str.
           1044]
          Length = 952

 Score = 41.1 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 29/249 (11%), Positives = 60/249 (24%), Gaps = 40/249 (16%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
              +  I+   G+GKT     ++  LI    G  I+ +A     +      E        
Sbjct: 122 PRQRILIADAVGLGKTLEAGILVSELIRRGRGKRILVLAVK--SMLTQFQKEF------- 172

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH---NTHG 192
                F +    L  +G            +  HY        +         H   N   
Sbjct: 173 --WSRFAIPLTRLDSAGLQKVRNRIPTNHNPFHYFDKTIISIDTLKQDIEYRHHLENAWW 230

Query: 193 MAVFNDEASGTPDIINKSIL----GFFTELNPNRFWIMTS----------------NTRR 232
             +  DEA    +    S+           +     +  +                +   
Sbjct: 231 DIIVIDEAHNVAERGTSSLRSKLAKLLAGRSDTLIMLSATPHDGKAESFASLMNMLDPTA 290

Query: 233 LNGW-FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG-----IISRYGLDSDVARIEILG 286
           +     Y+  +   ++    +      + +   F E           G + +  R  +  
Sbjct: 291 IANPKEYEYADFADKNLVVRRFKKDVKDQMSGEFPERNIVKLTRLASGAEEEAYRRLVES 350

Query: 287 QFPQQEVNN 295
           QF   +   
Sbjct: 351 QFRDDDDEQ 359


>gi|15834515|ref|NP_313288.1| ATP-dependent helicase [Escherichia coli O157:H7 str. Sakai]
 gi|13364739|dbj|BAB38684.1| putative ATP-dependent helicase [Escherichia coli O157:H7 str.
           Sakai]
          Length = 943

 Score = 41.1 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 29/249 (11%), Positives = 60/249 (24%), Gaps = 40/249 (16%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
              +  I+   G+GKT     ++  LI    G  I+ +A     +      E        
Sbjct: 113 PRQRILIADAVGLGKTLEAGILVSELIRRGRGKRILVLAVK--SMLTQFQKEF------- 163

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH---NTHG 192
                F +    L  +G            +  HY        +         H   N   
Sbjct: 164 --WSRFAIPLTRLDSAGLQKVRNRIPTNHNPFHYFDKTIISIDTLKQDIEYRHHLENAWW 221

Query: 193 MAVFNDEASGTPDIINKSIL----GFFTELNPNRFWIMTS----------------NTRR 232
             +  DEA    +    S+           +     +  +                +   
Sbjct: 222 DIIVIDEAHNVAERGTSSLRSKLAKLLAGRSDTLIMLSATPHDGKAESFASLMNMLDPTA 281

Query: 233 LNGW-FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG-----IISRYGLDSDVARIEILG 286
           +     Y+  +   ++    +      + +   F E           G + +  R  +  
Sbjct: 282 IANPKEYEYADFADKNLVVRRFKKDVKDQMSGEFPERNIVKLTRLASGAEEEAYRRLVES 341

Query: 287 QFPQQEVNN 295
           QF   +   
Sbjct: 342 QFRDDDDEQ 350


>gi|229194206|ref|ZP_04321061.1| phage terminase, large subunit [Bacillus cereus ATCC 10876]
 gi|228589267|gb|EEK47231.1| phage terminase, large subunit [Bacillus cereus ATCC 10876]
          Length = 539

 Score = 41.1 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 55/185 (29%), Gaps = 24/185 (12%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS--- 109
            WQ +F+ A+  +      +      +  I  GRG GKT   A+   ++++   G++   
Sbjct: 53  PWQ-KFLNALM-YGVRFKKDDRIVFDEVLILMGRGGGKTGYMAYDSFYMMTGHHGINNYD 110

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I  +A SE Q K   + +V   +S                   +   L E      +   
Sbjct: 111 IDVVATSEDQAK-RTFTDVYNVIS--------TPSFKEKFKKIFKWTLEEIQHKKTNSVM 161

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                    +               V  DEA         +I  + +     R   +   
Sbjct: 162 NYNTSNSRTKD--------GKRTGCVIFDEAHEY--ENYDNINVYTSGQGKVRGSRIIYT 211

Query: 230 TRRLN 234
           T   +
Sbjct: 212 TTDGH 216


>gi|313885754|ref|ZP_07819501.1| type III restriction enzyme, res subunit [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312618981|gb|EFR30423.1| type III restriction enzyme, res subunit [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 711

 Score = 41.1 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 59/206 (28%), Gaps = 11/206 (5%)

Query: 4   LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63
             ++++ L   L++ L+     L    FV                     +Q + +    
Sbjct: 3   KKTSNKTLPLPLYDELL----KLDQDVFVSATAYDHPAYLTENMVHTFRYYQEDALR-FF 57

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
            H  +              +   G GKT L A +ML+L       + + + N+ + L  T
Sbjct: 58  HHSQTLPQFHYRHPNHVLFNMATGSGKTDLMAGLMLYLYQEHDYQNFLFVVNTNSVLNKT 117

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPS-----GWYAELLEQSMGIDSKHYTITCRTYSE 178
           +    +        +   E++   +            +     + + S            
Sbjct: 118 IDNLTNPQSDKYLFQQSIEIEGERIRIEKVSQYPRQPQKNVIYLKLASIQSVFNDLFTQR 177

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTP 204
           E         + H +AV  DEA    
Sbjct: 178 ENTMGLTDY-SRHKVAVLGDEAHHYS 202


>gi|255927576|gb|ACU41198.1| gp52 [Mycobacterium phage Colbert]
          Length = 559

 Score = 41.1 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/169 (11%), Positives = 45/169 (26%), Gaps = 13/169 (7%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q E +EA++ H    V        +  +    G GK+T+     +     R    ++
Sbjct: 2   RPYQREAVEAIESHWSQGVT-------RVGVVLPTGTGKSTVIGRTAVNGYQNREP--VL 52

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +A+    +             + P      +  +        A ++  ++   +  +  
Sbjct: 53  MVAHRGELIDQMAGTIF----EVDPSIPRSHVGIVRAEMDDHSAPIVVATLQTLATAHRR 108

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220
               +        V      G      E  G  D +           + 
Sbjct: 109 EAVGFRRRILWDEVHHAGAEGFHTTFTELGGYTDALFAGFTATMRRDDK 157


>gi|239500908|ref|ZP_04660218.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter baumannii
           AB900]
          Length = 583

 Score = 41.1 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 38/149 (25%), Gaps = 16/149 (10%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
            E ++ +                   I+ G G GKT   A ++  L    P + +   A 
Sbjct: 118 EEHLDLLTDPHQRAALQMVSRQSLSIITGGPGTGKTYTLARIIAVLSQAIPHIRVAMAAP 177

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
           +    +                     +Q+    P  + + L+   +   S         
Sbjct: 178 TGKAAQRM----------------QEALQNSFNDPKLFESGLMSDELRNQSTQTIHRLLG 221

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTP 204
               +   F          +  DEAS   
Sbjct: 222 MGHSQTPRFNQKQPLPYDVIVVDEASMLD 250


>gi|124028015|ref|YP_001013335.1| P-loop ATPase [Hyperthermus butylicus DSM 5456]
 gi|123978709|gb|ABM80990.1| P-loop ATPase [Hyperthermus butylicus DSM 5456]
          Length = 743

 Score = 41.1 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 41/150 (27%), Gaps = 11/150 (7%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q E ++ +  H  S             +   RG GK+ L    + +++++     +   A
Sbjct: 203 QAEALDKIVAHVRSRG-------RSILVLGDRGRGKSGLLGLAVAYIVASHMAGFVSVTA 255

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL--HPSGWYAELLEQSMGIDSKHYTIT 172
            S   +  + +  +   L  L  RHW   +   +      W+          D       
Sbjct: 256 PSPANV-QSFFRILRLALGKLGTRHWEIRRGNIVIGIAGPWFHVRYHTPDRADPGS-FTV 313

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
               +   P             +      G
Sbjct: 314 VDEAAALGPSRLRSIARRAPRLLAATTIHG 343


>gi|15218086|ref|NP_173520.1| emb1507 (embryo defective 1507); ATP binding / ATP-dependent
            helicase/ helicase/ nucleic acid binding /
            nucleoside-triphosphatase/ nucleotide binding
            [Arabidopsis thaliana]
 gi|4836892|gb|AAD30595.1|AC007369_5 Putative RNA helicase [Arabidopsis thaliana]
 gi|332191925|gb|AEE30046.1| putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis
            thaliana]
 gi|332191926|gb|AEE30047.1| putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis
            thaliana]
          Length = 2171

 Score = 41.1 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/167 (11%), Positives = 37/167 (22%), Gaps = 16/167 (9%)

Query: 57   EFMEAVDVHCHSNVNNSNPTIFK----CAISAGRGIGKTTLNAWMMLWLISTRPGM--SI 110
            E +     H +         ++       ++A  G GKT    + +L      P     +
Sbjct: 1342 EILYQDFKHFNPVQTQVFTVLYNTNDNVLVAAPTGSGKTICAEFAILRNHHEGPDATMRV 1401

Query: 111  ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
            + IA  E   K        K+   L  R        +L                  +   
Sbjct: 1402 VYIAPLEAIAKEQFRIWEGKFGKGLGLRVVELTGETALDLKLLEK----------GQIII 1451

Query: 171  ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217
             T   +           +         DE           +    + 
Sbjct: 1452 STPEKWDALSRRWKQRKYVQQVSLFIVDELHLIGGQHGPVLEVIVSR 1498


>gi|312884016|ref|ZP_07743733.1| ATP-dependent RNA helicase SrmB [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368474|gb|EFP96009.1| ATP-dependent RNA helicase SrmB [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 407

 Score = 41.1 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 79/313 (25%), Gaps = 50/313 (15%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
             + +P + Q E +                       SA  G GKT       L  +   
Sbjct: 21  MGYQRPTQIQAEAIPQALDG------------RDVLASAPTGTGKTAAFVLPALQFLQDF 68

Query: 106 P-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
           P        I+ +  +         AE ++ L+     + F +     +          Q
Sbjct: 69  PRKQPGPARILILTPTRELAMQV--AEQARALAKHTRLNIFTITGGVQYQEHADILATTQ 126

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220
            +        +                       +  DEA    D+     +   +    
Sbjct: 127 DI--------VVATPGRLMEYIEAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSSECR 178

Query: 221 NRFWIMTSNTR----RLNGWFYDIFNIP---------LEDWKRYQIDTRTVEGIDS-GFH 266
            R   +  +       + G+  D+   P          E  K  Q   R  +        
Sbjct: 179 WRKQTLLFSATLEGRGVEGFTADLLKEPAMIDAEPSRRERKKIAQWYHRADDMAHKLELL 238

Query: 267 EGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AIDDLYAP 317
           + I++     S V     E L     +     IP  +I  E    R         D    
Sbjct: 239 KSILNNQAERSIVFLKTRERLSALRSELEKAEIPCAWIQGEMPQDRRNNAISRFSDGTVN 298

Query: 318 LIMGCDIAGEGGD 330
           +++  D+A  G D
Sbjct: 299 VLLATDVAARGID 311


>gi|72021085|ref|XP_793570.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115928806|ref|XP_001188414.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 1117

 Score = 41.1 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 46/170 (27%), Gaps = 16/170 (9%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLI-STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
             + A  G GKT + + + L  I  T P   ++ +A +          E++  +      
Sbjct: 6   LIVQAKSGTGKTCVFSVIALEGIDLTNPSTQVLILAPT---------REIAVQIQDTIRA 56

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
              EM+ L  H       L         K +         ++   +             D
Sbjct: 57  IGCEMEGLRSHVFIGGT-LFGPDRQKLKKCHIAVGTPGRIKQLIEYEVLKTGTIRLFVLD 115

Query: 199 EASGTPDIINK----SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244
           EA    D   +     I    ++ N     +  +    L          P
Sbjct: 116 EADKLLDDTFQEQVNWIYNHLSD-NKQMLALSATYPEYLAKHLTKYMREP 164


>gi|87119779|ref|ZP_01075676.1| PhoH family protein [Marinomonas sp. MED121]
 gi|86165255|gb|EAQ66523.1| PhoH family protein [Marinomonas sp. MED121]
          Length = 463

 Score = 41.1 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 47/144 (32%), Gaps = 13/144 (9%)

Query: 87  GIGKTTLNAWMML-WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
           G GKT L     L   +  +    II   ++    ++  +   ++   M P    F+   
Sbjct: 282 GSGKTLLALAYALQVSMEEKRFSKIIVARSTPPMAEDIGFLPGTEEEKMAPWLAAFDDNL 341

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
             LH +  ++      +   +     +           F+   + +   +  DEA G   
Sbjct: 342 EILHGADEHSISSIDYVKQKANIQFKSL---------NFMRGRSFNNALIIVDEAQGLTQ 392

Query: 206 IINKSILGFFTELNPNRFWIMTSN 229
              KSI    T +  N   I+  N
Sbjct: 393 FQLKSI---VTRIGSNSRIIVLGN 413


>gi|332310408|gb|EGJ23503.1| Ftsk/spoIIIe family protein [Listeria monocytogenes str. Scott A]
          Length = 1478

 Score = 41.1 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 32/328 (9%), Positives = 76/328 (23%), Gaps = 44/328 (13%)

Query: 26   LSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAG 85
            L   NF      W    KPL+            ++  ++     +          A+ + 
Sbjct: 942  LHPVNF---EEAWKEPKKPLQATIG-------LLDQPELQAQVPLTLDLTKDGHVAVFSS 991

Query: 86   RGIGKTTLNAWMMLWLISTRPGMS------------IICIANSETQLKNTLWAE---VSK 130
             G GK+T    +++ L                    ++ + +        +  E   + K
Sbjct: 992  PGFGKSTFLQSLVMDLARQHNPEQLHVYLLDFGTNGLLPLVDLPHIADTMMVDEVEKIQK 1051

Query: 131  WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
            +L +  +      + LS +      +    S         +     + +           
Sbjct: 1052 FLRICLNEIKTRKKLLSQYRVANIEQYERASGKELPNIIVVLDNYDAVKDAGLGDDF--E 1109

Query: 191  HGMAVFNDEASGTPDIINKSILGF--------FTELNPNRFWIMTSNTRRLNGWFYDIFN 242
              +     E +     +   I                     +   +   ++        
Sbjct: 1110 KIITQITREGASI--GMFMIISASRHMSLRTQMATNIKQMIALYLIDKNDISSTVGRTDT 1167

Query: 243  IPLEDWKRYQIDTRTVEGIDS------GFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
               E   R  +   TV    +            I     ++ + R    G+ P+      
Sbjct: 1168 PLEEYPGRALVKLETVTTFQTTLPSHGEETIQQIEGIRNEAKLMREGWQGELPESVPMIP 1227

Query: 297  IPHNYIEEAMSRE-AIDDLYAPLIMGCD 323
                  +     E         + +G D
Sbjct: 1228 EKIKLADFCEWMETKEVVANGNIPIGVD 1255


>gi|254518470|ref|ZP_05130526.1| phage terminase [Clostridium sp. 7_2_43FAA]
 gi|226912219|gb|EEH97420.1| phage terminase [Clostridium sp. 7_2_43FAA]
          Length = 579

 Score = 41.1 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 58/209 (27%), Gaps = 13/209 (6%)

Query: 54  WQLEFMEAVDVHC--HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML--WLISTRPGMS 109
           +Q  F+EA+         V              GR  GKT L   + L  W      G  
Sbjct: 86  FQKAFIEAIFAIKMYDEEVGRYVRKYQDILFLVGRKNGKTPLIGAICLSEWFCGEM-GKK 144

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I+C +N   Q  + ++  ++              ++L             ++     K  
Sbjct: 145 ILCASNDFEQA-DLMFQAINSMREESKTLEKVTRKNLK-----GIYFGNPRTKKKKGKFS 198

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSILGFFTELNPNRFWIMTS 228
                +  +    +       +      DE      D +   I    +  +   ++ +T+
Sbjct: 199 YQNKGSIRKLSAKSG-AKEGRNIGVGAVDEVFEMEDDSLVMPIRQALSTQDEPLYFELTT 257

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257
                +G+         +     + + R 
Sbjct: 258 EGFTQDGYLDKRLIEARKVLNGEKQNERW 286


>gi|221369955|ref|YP_002521051.1| Helicase domain protein [Rhodobacter sphaeroides KD131]
 gi|221163007|gb|ACM03978.1| Helicase domain protein [Rhodobacter sphaeroides KD131]
          Length = 990

 Score = 41.1 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 44/153 (28%), Gaps = 18/153 (11%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G+GKT     ++  L    P    + IA             +S+W      R        
Sbjct: 61  GLGKTVQALMIVNALRWQDPKHRTLVIAPD---------NLLSQWQEECWIRGHVMPAIA 111

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                G + +LL  ++       T   +       D  V         +  DE    P  
Sbjct: 112 GALGHGTHDDLLPITLARPRDLMTRPGQGTRTITADPDV------FDLLIVDEPQTMPR- 164

Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
             + I    +  +  R  ++ S T RL    + 
Sbjct: 165 --EVIQAIASASDDFRQVLVLSATPRLGDPSWR 195


>gi|197334932|ref|YP_002155940.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
 gi|197316422|gb|ACH65869.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
          Length = 431

 Score = 41.1 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 25/272 (9%), Positives = 70/272 (25%), Gaps = 38/272 (13%)

Query: 87  GIGKTTLNAWMMLWLIST------RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           G GKT   A  ++  +        R     + +A +    +                  +
Sbjct: 48  GTGKTAAFALPVIQQLLDSKKSATRRTARALILAPTRELAEQIAVNI----------ADY 97

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
            +  SL++       ++  Q   ++     +       +           +   +  DEA
Sbjct: 98  TKYTSLTVTSVFGGKKMSSQERALEPGVDILVATPGRLQEHIEEENVSIANLEFLVFDEA 157

Query: 201 S-GTPDIINKSILG-FFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
                     +I           +  + ++ +               +       +T   
Sbjct: 158 DRMLDMGFVNAIRNIMMEVNTSPQIMLFSATSSAQMNKLASDILRKPKRISVDPENTTAS 217

Query: 259 EGIDSGFHEGIISRYGLDSDV-----ARIEILGQFPQQEVNNFI-------------PHN 300
                 +      +  L S++      +  ++    ++  N  +               +
Sbjct: 218 TIAHVVYPVDEERKTELLSELIGRKNWQQVLVFVNYKETANEIVKELKLDGIKAVLCHGD 277

Query: 301 YIEEAMSREAID--DLYAPLIMGCDIAGEGGD 330
             + A  R   +  +  A +++  D+A  G D
Sbjct: 278 KAQSARRRALEEFKEGKARVMVATDVAARGLD 309


>gi|254930798|ref|ZP_05264157.1| diarrheal toxin/FtsK/SpoIIIE family protein [Listeria monocytogenes
            HPB2262]
 gi|293582340|gb|EFF94372.1| diarrheal toxin/FtsK/SpoIIIE family protein [Listeria monocytogenes
            HPB2262]
          Length = 1498

 Score = 41.1 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 32/328 (9%), Positives = 76/328 (23%), Gaps = 44/328 (13%)

Query: 26   LSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAG 85
            L   NF      W    KPL+            ++  ++     +          A+ + 
Sbjct: 962  LHPVNF---EEAWKEPKKPLQATIG-------LLDQPELQAQVPLTLDLTKDGHVAVFSS 1011

Query: 86   RGIGKTTLNAWMMLWLISTRPGMS------------IICIANSETQLKNTLWAE---VSK 130
             G GK+T    +++ L                    ++ + +        +  E   + K
Sbjct: 1012 PGFGKSTFLQSLVMDLARQHNPEQLHVYLLDFGTNGLLPLVDLPHIADTMMVDEVEKIQK 1071

Query: 131  WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
            +L +  +      + LS +      +    S         +     + +           
Sbjct: 1072 FLRICLNEIKTRKKLLSQYRVANIEQYERASGKELPNIIVVLDNYDAVKDAGLGDDF--E 1129

Query: 191  HGMAVFNDEASGTPDIINKSILGF--------FTELNPNRFWIMTSNTRRLNGWFYDIFN 242
              +     E +     +   I                     +   +   ++        
Sbjct: 1130 KIITQITREGASI--GMFMIISASRHMSLRTQMATNIKQMIALYLIDKNDISSTVGRTDT 1187

Query: 243  IPLEDWKRYQIDTRTVEGIDS------GFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
               E   R  +   TV    +            I     ++ + R    G+ P+      
Sbjct: 1188 PLEEYPGRALVKLETVTTFQTTLPSHGEETIQQIEGIRNEAKLMREGWQGELPESVPMIP 1247

Query: 297  IPHNYIEEAMSRE-AIDDLYAPLIMGCD 323
                  +     E         + +G D
Sbjct: 1248 EKIKLADFCEWMETKEVVANGNIPIGVD 1275


>gi|193206561|ref|NP_502998.2| Maternal Effect Lethal family member (mel-46) [Caenorhabditis
           elegans]
 gi|154147106|emb|CAM36366.2| C. elegans protein T06A10.1, confirmed by transcript evidence
           [Caenorhabditis elegans]
 gi|154756880|gb|ABS85191.1| MEL-46 [Caenorhabditis elegans]
          Length = 973

 Score = 41.1 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 18/158 (11%), Positives = 45/158 (28%), Gaps = 13/158 (8%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPG--MSIICIANSETQLKNTLWAEVSKWLSMLPH 137
             + A  G GKT + + + +  + +R      +I    +          E+S  +     
Sbjct: 62  MLVQAKSGTGKTLVFSVLAVENLDSRSSHIQKVIVT-PT---------REISVQIKETVR 111

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
           +        S++  G   +L    +   ++   +        +       + +H      
Sbjct: 112 KVAPTGARTSVYVGGSAHKLNLIDLK-QTRPQIVIGTPGRIAQLVKLGAMNMSHVDFFVL 170

Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
           DEA    D + +  +       P    +   +      
Sbjct: 171 DEADKLMDEVFRDDINIIINSLPQIRQVAVFSATYPRN 208


>gi|148826204|ref|YP_001290957.1| DNA-dependent helicase II [Haemophilus influenzae PittEE]
 gi|229846218|ref|ZP_04466330.1| DNA-dependent helicase II [Haemophilus influenzae 7P49H1]
 gi|148716364|gb|ABQ98574.1| DNA helicase II [Haemophilus influenzae PittEE]
 gi|229811222|gb|EEP46939.1| DNA-dependent helicase II [Haemophilus influenzae 7P49H1]
          Length = 726

 Score = 41.1 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 84/302 (27%), Gaps = 29/302 (9%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
           E ++ ++      V           + AG G GKT +    + WLI+         +A +
Sbjct: 5   ELLDGLNDKQREAVAAPLGNH---LVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
            T   N   AE+   +     +H             W       +  +   H+       
Sbjct: 62  FT---NKAAAEMRHRIQSTLAKHAQHQLFG-----MWIGTFHSIAHRLLRAHHLDVGLPQ 113

Query: 177 SEERPDTFVGPHNTHGMAVF--NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
             +  D+         +      DE +  P       +    +               + 
Sbjct: 114 DFQILDSEDQRRLIKRLLKLHNFDEKAF-PPKQACWYINNKKDEGLR--------PNDIE 164

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294
            +        ++ ++ YQ        +D       +        +       +F    V+
Sbjct: 165 DFNDRQEREWIKIYQIYQDTCDRAGLVDFAELLIRVYELFEKKPLILQRYQQRFQHILVD 224

Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354
            F   N I+     + +      +++  D      D++ +   RG  IE+I  +      
Sbjct: 225 EFQDTNKIQYK-WIKILAGKTGKVMIVGD-----DDQS-IYGWRGAQIENIQKFLKDFKA 277

Query: 355 ET 356
           ET
Sbjct: 278 ET 279


>gi|47230040|emb|CAG10454.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1724

 Score = 41.1 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/157 (10%), Positives = 41/157 (26%), Gaps = 12/157 (7%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              +    G+GKT + + +M       P   I+ +A ++  +      ++     ++   
Sbjct: 165 NTLVCLPTGLGKTFIASVVMYNFYRWYPSGKIVFMAPTKPLVAQ----QIEACYKVMGIP 220

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                +      +    E+             +      E  P             V  D
Sbjct: 221 QAHMAELTGSTAAKQRQEVWRTKRVFFLTPQVMVNDLSRETCP-------AQQVKCVVID 273

Query: 199 EASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
           EA     +     ++   +        +  S T   +
Sbjct: 274 EAHKALGNHAYCQVIRQLSSQTLQFRILALSATPGGD 310


>gi|47092188|ref|ZP_00229980.1| diarrheal toxin/FtsK/SpoIIIE family protein [Listeria monocytogenes
            str. 4b H7858]
 gi|47019390|gb|EAL10131.1| diarrheal toxin/FtsK/SpoIIIE family protein [Listeria monocytogenes
            str. 4b H7858]
 gi|328468392|gb|EGF39398.1| DNA segregation ATPase FtsK/SpoIIIE [Listeria monocytogenes 1816]
          Length = 1498

 Score = 41.1 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 32/328 (9%), Positives = 76/328 (23%), Gaps = 44/328 (13%)

Query: 26   LSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAG 85
            L   NF      W    KPL+            ++  ++     +          A+ + 
Sbjct: 962  LHPVNF---EEAWKEPKKPLQATIG-------LLDQPELQAQVPLTLDLTKDGHVAVFSS 1011

Query: 86   RGIGKTTLNAWMMLWLISTRPGMS------------IICIANSETQLKNTLWAE---VSK 130
             G GK+T    +++ L                    ++ + +        +  E   + K
Sbjct: 1012 PGFGKSTFLQSLVMDLARQHNPEQLHVYLLDFGTNGLLPLVDLPHIADTMMVDEVEKIQK 1071

Query: 131  WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
            +L +  +      + LS +      +    S         +     + +           
Sbjct: 1072 FLRICLNEIKTRKKLLSQYRVANIEQYERASGKELPNIIVVLDNYDAVKDAGLGDDF--E 1129

Query: 191  HGMAVFNDEASGTPDIINKSILGF--------FTELNPNRFWIMTSNTRRLNGWFYDIFN 242
              +     E +     +   I                     +   +   ++        
Sbjct: 1130 KIITQITREGASI--GMFMIISASRHMSLRTQMATNIKQMIALYLIDKNDISSTVGRTDT 1187

Query: 243  IPLEDWKRYQIDTRTVEGIDS------GFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
               E   R  +   TV    +            I     ++ + R    G+ P+      
Sbjct: 1188 PLEEYPGRALVKLETVTTFQTTLPSHGEETIQQIEGIRNEAKLMREGWQGELPESVPMIP 1247

Query: 297  IPHNYIEEAMSRE-AIDDLYAPLIMGCD 323
                  +     E         + +G D
Sbjct: 1248 EKIKLADFCEWMETKEVVANGNIPIGVD 1275


>gi|302684619|ref|XP_003031990.1| hypothetical protein SCHCODRAFT_234573 [Schizophyllum commune H4-8]
 gi|300105683|gb|EFI97087.1| hypothetical protein SCHCODRAFT_234573 [Schizophyllum commune H4-8]
          Length = 662

 Score = 40.7 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 32/276 (11%), Positives = 67/276 (24%), Gaps = 27/276 (9%)

Query: 22  AECVLSFKNFVMRFFP----WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTI 77
           A+       F   F P    W     P+         + + +     +    + +     
Sbjct: 362 ADLFDQP-FFCAMFLPEEDTWDE-DAPMRPSLPIRFAKEDALNDSQRNALQRILSGANED 419

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA-------NSETQLKNTLWAEVSK 130
               +    G GKTT+ A  +  ++      +I  +A       N   +L +  + E   
Sbjct: 420 RLVLVQGPPGTGKTTVIAGAVESIVRGDSKRTIWLVAQSNVAVKNMAEKLADVGFREFKV 479

Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS---KHYTITCRTYSEERPDTFVGP 187
            +S   H  W E     +      ++   ++    +       +   T S    D     
Sbjct: 480 LVSKDFHHEWHEHLYEKIEHRLIRSDGFPETPNEAARLLGDARVVLCTLSALAVDRLQSV 539

Query: 188 -HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN-------TRRLNGWFYD 239
            H      +  DEAS         +L            ++             L  +   
Sbjct: 540 THVVPPQMMLVDEASQI---EVGDLLPMLHLHRNRLEKVVFIGDDRQYRMPTFLGDFISQ 596

Query: 240 IFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275
                    +           +D    +   +    
Sbjct: 597 YVYDGQLLSEHRNKSADCCRFVDVAEGKETRAGMSW 632


>gi|168029927|ref|XP_001767476.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681372|gb|EDQ67800.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1075

 Score = 40.7 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 67/225 (29%), Gaps = 28/225 (12%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            A++A RG GK+     + +         +I   A S   LK  L+  + K    + ++ 
Sbjct: 279 VALTAARGRGKSAAL-GVAIAGAVAFGYSNIFVTAPSPENLKT-LFEFIFKGFDAMEYKE 336

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +   +    S +   ++  ++    +      +    E+              +  DE
Sbjct: 337 HIDYDLVESTNSAFNKAIVRVNIFRQHRQTIQYIQPKDHEK--------LAQAELLVIDE 388

Query: 200 ASGTPDIINKSILG-----FFTELNPNRF-----------WIMTSNTRRLNGW--FYDIF 241
           A+  P  I K++LG       + +N                ++  N     G      + 
Sbjct: 389 AAAIPLPIVKALLGPYLVFLCSTVNGETCDLGFYSVEFVTCLLLLNHYEGTGRSLSLKLI 448

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
               E   +           +    E I  + G   +    E+L 
Sbjct: 449 QQLREQSNKLHFKLTGRTFRELELAEPIRYKAGDPIEAWLNELLC 493


>gi|156406753|ref|XP_001641209.1| predicted protein [Nematostella vectensis]
 gi|156228347|gb|EDO49146.1| predicted protein [Nematostella vectensis]
          Length = 2147

 Score = 40.7 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 19/188 (10%), Positives = 43/188 (22%), Gaps = 17/188 (9%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               I A  G GKT    + +L  +   P    + +   +   +       + W +     
Sbjct: 1345 NVFIGAPTGSGKTICAEFAVLRFLQQSPEGRCVYVTPIQALAEQVY----ADWQNK---- 1396

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
              F +Q              +  +         T   +           +  +      D
Sbjct: 1397 --FGLQLGKNVVMLTGETSADLKLLAKGNVVVSTPEKWDVLSRRWKQRKNVQNVSLFIMD 1454

Query: 199  EASGTPDIINKSILGFFTELN-------PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY 251
            EA          +    + +             +  S++            +P      +
Sbjct: 1455 EAHLIGGDTGPVMEIICSRMRYISSQLERTIRIVALSSSLANAKDVAQWLGVPSTGLFNF 1514

Query: 252  QIDTRTVE 259
              + R V 
Sbjct: 1515 HPNVRPVP 1522


>gi|290975236|ref|XP_002670349.1| dead box RNA helicase [Naegleria gruberi]
 gi|284083907|gb|EFC37605.1| dead box RNA helicase [Naegleria gruberi]
          Length = 2295

 Score = 40.7 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 25/202 (12%), Positives = 51/202 (25%), Gaps = 24/202 (11%)

Query: 28  FKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA----IS 83
           ++  V           PL   S    W  +       H +   ++   + +K +    + 
Sbjct: 533 YEEHVFPAPKKREDNTPLVPISIFEDW-AQLAFKGYTHLNRVQSDVFYSAYKTSENMLVC 591

Query: 84  AGRGIGKTTLNAWMMLWLI--------STRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
           A  G GKT +    +L  I          R    II IA  +      +     +   + 
Sbjct: 592 APTGCGKTNIAMMTVLREIGQHFKGGKIRREEFKIIYIAPMKALAAEMVENFSKRLAPLG 651

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
                  ++ ++        E+ +  M + +        T                   +
Sbjct: 652 I-----TVKEMTGDMQLTKREVQQTQMIVTTPEKWDVT-TRKASDQALIQLTR-----LI 700

Query: 196 FNDEASGTPDIINKSILGFFTE 217
             DE     +     I      
Sbjct: 701 IIDEVHLLNEDRGPVIESIVAR 722



 Score = 40.7 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 35/124 (28%), Gaps = 12/124 (9%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
               I A  G GKT L A + ++ +   +P   +I IA  +  ++  L     K++  L  
Sbjct: 1451 NILIGAPTGSGKT-LAAELCIFRLFNTKPNQKVIYIAPLKALVRERLVEWEKKFVQKLGK 1509

Query: 138  RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
            +   E+            E        +                D            +  
Sbjct: 1510 K-MVELTGDFTPDVKLLKEADIVITTPEKWDGISRNWQNRSYVRDVG---------LIVM 1559

Query: 198  DEAS 201
            DE  
Sbjct: 1560 DEIH 1563


>gi|255928514|gb|ACU42129.1| gp52 [Mycobacterium phage UncleHowie]
          Length = 567

 Score = 40.7 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 19/169 (11%), Positives = 45/169 (26%), Gaps = 13/169 (7%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q E +EA++ H    V        +  +    G GK+T+     +     R    ++
Sbjct: 10  RPYQREAVEAIESHWSQGVT-------RVGVVLPTGTGKSTVIGRTAVNGYQNREP--VL 60

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +A+    +             + P      +  +        A ++  ++   +  +  
Sbjct: 61  MVAHRGELIDQMAGTIF----EVDPSIPRSHVGIVRAEMDDHSAPIVVATLQTLATAHRR 116

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220
               +        V      G      E  G  D +           + 
Sbjct: 117 EAVGFRRRILWDEVHHAGAEGFHTTFTELGGYTDALFAGFTATMRRDDK 165


>gi|167516624|ref|XP_001742653.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163779277|gb|EDQ92891.1| predicted protein [Monosiga brevicollis MX1]
          Length = 649

 Score = 40.7 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 22/201 (10%), Positives = 52/201 (25%), Gaps = 5/201 (2%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G+GKT     ++L   ST+P    + I  +   ++             L    +     +
Sbjct: 74  GLGKTVQTIALILSRPSTKPNRPTMVICPTVALMQWRNEVRSKTVEGALSCFVYHGDNRI 133

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP--DTFVGPHNTHGMAVFNDEASGTP 204
                    +++  +       +      +  +          H  H   +  DEA    
Sbjct: 134 RDLEQLSSFDIILTTYATVESGFRRMKSGFQRKGQKMYEDSVLHALHLHRLVLDEAHYIK 193

Query: 205 DIINKSILGFFTELNPNRFWIMTSNT-RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
           D  + +    + +L  +  W ++    +   G  Y +  +   D   +    R       
Sbjct: 194 DRFSNTARAVW-DLKADYKWSLSGTPLQNRVGELYSLVKLLRADPYSHYF-CRQCPCKSL 251

Query: 264 GFHEGIISRYGLDSDVARIEI 284
            +                   
Sbjct: 252 KWSFERRQCTECGHRSMSHFC 272


>gi|146283765|ref|YP_001173918.1| SNF2 family DNA/RNA helicase [Pseudomonas stutzeri A1501]
 gi|145571970|gb|ABP81076.1| superfamily II DNA/RNA helicase, SNF2 family [Pseudomonas stutzeri
           A1501]
          Length = 957

 Score = 40.7 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 57/237 (24%), Gaps = 17/237 (7%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q   M+A+                +  I+   G+GKT     +   L+       I+ + 
Sbjct: 101 QHGVMDALPFQLQPAHQVLQQLRPRLLIADTVGLGKTLEAGILTAELMRRGKARRILVVT 160

Query: 115 NS--ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
                 Q +   W   +  L+ L       ++         +       + +D       
Sbjct: 161 TKSMMRQFQQEFWNRFTIPLTRLDSAGIQRIRRDIPANHNPFNYYDRTIISVD------- 213

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTP---DIINKSILGFFTELNPNRFWIMTSN 229
                +   +            +  DEA       +    + L        +   ++T+ 
Sbjct: 214 ---TLKRDSEYRHYLEKAWWDLIIIDEAHNVSYKGNRTQSNRLAELLSQRSDALILLTAT 270

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL--DSDVARIEI 284
                   +      L+          T + ++  F              D    E+
Sbjct: 271 PHNGKKDSFASLMRMLDPTVLPSGADYTRDDVEHLFIRRFKKDVREQMKQDFPEREV 327


>gi|270296274|ref|ZP_06202474.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273678|gb|EFA19540.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 771

 Score = 40.7 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 45/326 (13%), Positives = 95/326 (29%), Gaps = 48/326 (14%)

Query: 7   TDQKLEQELHEMLMHAECVLSFKNFVMRFFP-WGIKGKPLEHFSQ---PHRWQLEFMEAV 62
           T ++ E +L       E    +            I   P  + +    P  +Q   ++  
Sbjct: 116 TGKETEIKLENFPTEEELYNRYLASKNYTSDELNIIETPFYYDAHSHEPRYYQRIAVDRT 175

Query: 63  DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN 122
                           +  +    G GKT     ++  L  +     I+ +A+     +N
Sbjct: 176 VEAIARGQQ-------RVLVVMATGTGKTFTAFQIIHRLHKSGAKKKILYLAD-----RN 223

Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182
            L  +    +        F  +  S+       ++        + ++ +  +   E +PD
Sbjct: 224 ILIDQT--MVQDFKPFKKFMTKITSV--GEGEEKIDSSYEVYMALYHQLVGK---EGKPD 276

Query: 183 TFVGPHNTHGMAVFNDEA---SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
            F+         +  DE    S   D   + +L +F+         MT+  +   G    
Sbjct: 277 PFLEVQPNFFDLIIVDECHRGSAKDDSAWRKVLEYFSSATQ---IGMTATPKADEG---- 329

Query: 240 IFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299
                        +D            +GI      D  +A   +   F   ++  + P 
Sbjct: 330 ----------ANNLDYFGEPVYTYSLLQGI-----QDGFLAPYRVTADFINVDLQGWTPD 374

Query: 300 NYIEEAMSREAIDDLYAPLIMGCDIA 325
               + + +E    LY    +G D+A
Sbjct: 375 EGEIDLLGKEIEQKLYQRQNIGRDLA 400


>gi|220933618|ref|YP_002512517.1| phage uncharacterized protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994928|gb|ACL71530.1| phage uncharacterized protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 537

 Score = 40.7 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 37/332 (11%), Positives = 89/332 (26%), Gaps = 29/332 (8%)

Query: 27  SFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR 86
            F+ F   +FP         +   P+    +++              +P     AI+A R
Sbjct: 48  DFEFFARTYFP--------HYIVHPNSRLHDYLYR-----RLPEIADSPRSETDAIAAPR 94

Query: 87  GIGKTTLNA-WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
           G  K+T+ +   ++W + T      I   ++  Q    L A  ++  +       F+  +
Sbjct: 95  GEAKSTITSQIYVIWCVVTGRKWYPIIGMDAFDQAAIMLEAIKAELEANPRLNMDFQEAT 154

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
                      +   +  I++       R      P                DE   TP+
Sbjct: 155 GQGRVWRAGVIVTRNNRKIEAVGSGKRIRG-RRHGPHRPDLFVGDDLEN---DENVRTPE 210

Query: 206 I------INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
                       +            I+       +     +   PL    +++   R  +
Sbjct: 211 QRDKLHGWLNKAVLKLGAAGAKFDVIVIGTILHYDSVLARVLKNPLWRGNKFKAVIRWPD 270

Query: 260 GID--SGFHEGIISRYGLDSDVARIEILGQFPQQEV-NNFIPHNYIEEAMSREAIDDLYA 316
            +D    + E ++++    ++    +           +        +  + R        
Sbjct: 271 RMDLWDRWEELLLNQGKEAAEAFYRKNQAHMETGAEVSWPDGRPLYDLMVIRARDGHAAF 330

Query: 317 PLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348
              +  D      D+          +  + +W
Sbjct: 331 DSELQNDP--LSDDEAPFAKVIVFWVNRLAEW 360


>gi|209876996|ref|XP_002139940.1| ATPase family protein [Cryptosporidium muris RN66]
 gi|209555546|gb|EEA05591.1| putative ATPase family protein [Cryptosporidium muris RN66]
          Length = 1072

 Score = 40.7 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 59/221 (26%), Gaps = 24/221 (10%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            ++++GRG GK+     + L    +    +I   +     +           +S+    H
Sbjct: 304 ISLTSGRGRGKSAAL-GLALSGAISYGYSNIFITSPYPENVSTVFEFVEVGLISLGYTEH 362

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC---RTYSEERPDTFVGPHNTHGMAVF 196
                  S   +       +  +        I     +T     P+ +          V 
Sbjct: 363 KHFELIRSKILTDIRVGGGKSHVNSHLIRINIFKEHRQTIQYISPEDYKLVS--QAELVV 420

Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-----------DIFNIPL 245
            DEA+  P       L    +   +  +IM+S T    G                 +   
Sbjct: 421 MDEAAAIP-------LPIVRKFLGSHIFIMSSTTNGYEGTGRALSVKLISELKKSCSSLK 473

Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
                    + +    +   +E I    G   +    ++L 
Sbjct: 474 NGIVDSNGISPSTSFKEINLNEPIRYGKGDPVEKWLYDLLC 514


>gi|164656581|ref|XP_001729418.1| hypothetical protein MGL_3453 [Malassezia globosa CBS 7966]
 gi|159103309|gb|EDP42204.1| hypothetical protein MGL_3453 [Malassezia globosa CBS 7966]
          Length = 1517

 Score = 40.7 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 56/230 (24%), Gaps = 31/230 (13%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GMS 109
            +QL+ +  +       +N               G+GKT  +  +M +L           
Sbjct: 629 PYQLKGLSWLANLYEQGINGILADEM--------GLGKTVQSISLMAYLAEVHDIWGPFL 680

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           +I  A++          E++K++  L    ++           +      + +  D    
Sbjct: 681 VIAPASTLHN----WQQEITKFVPALKALPYWGNVKDRAILRKF---WNRKQISYDRDAP 733

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                T  +                +  DEA       +          +     ++T  
Sbjct: 734 FHVLVTSYQLVVSDEKYFQRVKWQYMVLDEAQAIKSSSSN-RWKTLLGFHCRNRLLLTGT 792

Query: 230 TRRLNGWFYDIFNIPLEDW---KRYQIDTRTVEGIDSGFHEGIISRYGLD 276
                     + N   E W                 S +    I  +  +
Sbjct: 793 P---------VQNSMQELWALLHFIMPSLFDSHDEFSEWFSKDIENHAEN 833


>gi|320354338|ref|YP_004195677.1| flagellar biosynthesis protein FlhG [Desulfobulbus propionicus DSM
           2032]
 gi|320122840|gb|ADW18386.1| flagellar biosynthesis protein (FlhG) [Desulfobulbus propionicus
           DSM 2032]
          Length = 299

 Score = 40.7 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 24/236 (10%), Positives = 70/236 (29%), Gaps = 13/236 (5%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRG-IGKTTLNAWMMLWLIST 104
           EH  +P   Q   + A++    +            ++++G+G +GKT + A + +  +  
Sbjct: 3   EHTGRPTD-QAGTLRAMNSPRLTEERTRQAATRVVSVTSGKGGVGKTAVVANLAV--LLA 59

Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
           R G  ++ +          +   ++   ++    H+F  +           E ++     
Sbjct: 60  RMGKRVLILDADLGLANIDVVFGLAPSHNL---NHFFTGEQGLETILTDGPEGIKILPAG 116

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
                     +  + R    +   N     V  D  +G  + +       F         
Sbjct: 117 SGVQRFTRLDSEQKMRLLEGLDAMNNDFDFVLIDTEAGISENVTY-----FNTAAQEILV 171

Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280
           + T +   +    Y +  +    +     +       +      +  +  + ++  
Sbjct: 172 VTTPDPTAITDA-YALMKLLSNQYHEKHFNLIVNFIRNEEEALDVYRKLTMVANRY 226


>gi|282721431|gb|ADA83879.1| gp53 [Mycobacterium phage Fang]
          Length = 598

 Score = 40.7 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/169 (11%), Positives = 45/169 (26%), Gaps = 13/169 (7%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q E +EA++ H    V        +  +    G GK+T+     +     R    ++
Sbjct: 41  RPYQREAVEAIESHWSQGVT-------RVGVVLPTGTGKSTVIGRTAVNGYQNREP--VL 91

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +A+    +             + P      +  +        A ++  ++   +  +  
Sbjct: 92  MVAHRGELIDQMAGTIF----EVDPSIPRSHVGIVRAEMDDHSAPIVVATLQTLATAHRR 147

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220
               +        V      G      E  G  D +           + 
Sbjct: 148 EAVGFRRRILWDEVHHAGAEGFHTTFTELGGYTDALFAGFTATMRRDDK 196


>gi|269963602|ref|ZP_06177925.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831615|gb|EEZ85751.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 430

 Score = 40.7 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 78/272 (28%), Gaps = 38/272 (13%)

Query: 87  GIGKTTLNAWMMLWLIST------RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           G GKT   +  M+  +        R     + +A +          E+++ ++    + +
Sbjct: 48  GTGKTAAFSLPMIQRLLDSGRNASRKTARALIMAPT---------RELAEQIADNI-KAY 97

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
            +  +LS+       ++  Q   +++    +       E           +   +  DEA
Sbjct: 98  TKYTNLSVAAIFGGRKMPSQISALENGVDILVATPGRLEEHIEQGNVSVANIEFLVFDEA 157

Query: 201 SGT-PDIINKSILGFFTELNPNRFWIMTSNTRRLN-GWFYDIFNIPLEDWKRYQIDTRTV 258
                     ++     +++ +   +M S T                +  +  + +T   
Sbjct: 158 DRILDMGFINAVRKIMLDVDTDPQIMMFSATTSTQLNVLARDILRKPKRIEVERANTTAQ 217

Query: 259 EG------IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY----------- 301
                   +D      ++S      +  ++ +   + +   +                  
Sbjct: 218 TVAHVLYPVDQERKTELLSELIGRKNWKQVLVFVNYKETANDVVKELKLDGIKAVVCHGD 277

Query: 302 -IEEAMSREAIDDLYA--PLIMGCDIAGEGGD 330
             + A  R   +       +++  D+A  G D
Sbjct: 278 RAQSARRRALEEFKTGKVRVMVATDVAARGLD 309


>gi|197286326|ref|YP_002152198.1| plasmid ATP-dependent helicase [Proteus mirabilis HI4320]
 gi|194683813|emb|CAR44896.1| putative plasmid ATP-dependent helicase [Proteus mirabilis HI4320]
          Length = 987

 Score = 40.7 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 64/235 (27%), Gaps = 22/235 (9%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
              +  I+   G+GKT     ++  LI    G  I+ +A     +      E        
Sbjct: 149 PRQRILIADAVGLGKTLEAGILVSELIRRGKGKRILVLAVK--SMLTQFQKEF------- 199

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH---NTHG 192
                F +    L  +G            +  +Y        +         H   + + 
Sbjct: 200 --WSRFSIPLTRLDSTGIQQVRNRIPTNHNPFYYYDKAIISIDTLKQDVEYRHYLESAYW 257

Query: 193 MAVFNDEASGTPD---IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
             +  DEA    +      +S L        +   ++++         +      L+   
Sbjct: 258 DIIVIDEAHNVAERGSHSQRSKLAKLLARRSDTLVMLSATPHDGKAESFASLMNMLDA-- 315

Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE 304
                    +     F +  +       DV    + G+FP++ ++        +E
Sbjct: 316 --TAIANPSDYSYDDFKDKNLVVRRFKKDVKDQMV-GEFPERHIDRVYAKASAQE 367


>gi|121704896|ref|XP_001270711.1| DEAD/DEAH box helicase, putative [Aspergillus clavatus NRRL 1]
 gi|119398857|gb|EAW09285.1| DEAD/DEAH box helicase, putative [Aspergillus clavatus NRRL 1]
          Length = 1761

 Score = 40.7 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/190 (10%), Positives = 47/190 (24%), Gaps = 21/190 (11%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P  WQ + ++ +                   + A    GKT ++ + M  ++       +
Sbjct: 707 PDEWQRQVLDEL------------DKEHSIFVVAPTSAGKTFISFYAMKKILQEDNDGVL 754

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + +A ++  +        +++    P R        ++H          +   + +  + 
Sbjct: 755 VYVAPTKALVNQIAAEIHARFRKSYPDRSH--KTVWAIHTRDIRINDPMKCQILVTVPHL 812

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNR-FWIMT 227
           +     S     T+          +  DE       D                       
Sbjct: 813 LQIMLLSPFNATTW----APRVKCIIFDEIHSIGHTDEGLVWEQLLLLAPCRIIALSATV 868

Query: 228 SNTRRLNGWF 237
            N      W 
Sbjct: 869 GNPAEFADWL 878


>gi|15643994|ref|NP_229043.1| ATP-dependent DNA helicase [Thermotoga maritima MSB8]
 gi|4981792|gb|AAD36313.1|AE001779_15 ATP-dependent DNA helicase [Thermotoga maritima MSB8]
          Length = 648

 Score = 40.7 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 49/307 (15%), Positives = 98/307 (31%), Gaps = 28/307 (9%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
           E+  +P    L F+E +D      V  S     +C + AG G GKT +  + + +L++  
Sbjct: 3   EYRIRPREANLSFLEDLDEEQRRAVVESEG---RCIVIAGPGSGKTRVITYKIAYLLANG 59

Query: 106 -PGMSIICIANSETQLKNTLWA---EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
                I+ +  +    +  +        + LS +    +  + +  L     Y  L    
Sbjct: 60  VDPSRILLVTFTRAAAREMVERAKAVTGRELSEMLAGTFHHVCNHFLRKYAPYVGLERNY 119

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221
             +D +      R    +  +        +            P ++          L   
Sbjct: 120 SILDREDAESLMRHARSKYLERKSKEERKNF---------PQPSVLMAIYSYMKNTLKSL 170

Query: 222 RFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR 281
           R  I+  N +     F D+     E +  Y+ + R+   +D         R   ++   R
Sbjct: 171 RESIVVKNPK-----FLDLKEEISEIFDLYEQEKRSQNVVDYEDLLFYAYRLFEENKEIR 225

Query: 282 IEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNI 341
                +F    V+ F   NY++  +            I+       G D   +   RG  
Sbjct: 226 DREAERFLWILVDEFQDTNYVQYKIVEHLSSKHGN--ILAV-----GDDAQSIYSFRGAR 278

Query: 342 IEHIFDW 348
            E++ D+
Sbjct: 279 YENVEDF 285


>gi|323463426|gb|ADX75579.1| putative helicase [Staphylococcus pseudintermedius ED99]
          Length = 954

 Score = 40.7 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 63/184 (34%), Gaps = 31/184 (16%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P+  Q E +  +++      +       +  I +  G GKT ++A  +            
Sbjct: 223 PNMMQQEALRELEMIRQQGES-------RGLIISATGTGKTIMSALDV----RQVQPEKF 271

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + + ++E  L+  +      +  +L              P+G +  L        +K+  
Sbjct: 272 LFVVHNEGILRRAM----EDYRRVLADE-----------PAGAFGLLTGNDKQTTAKYLF 316

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
            T +T S+  PD +      H   +  DEA        + +  +FT   P     MT+  
Sbjct: 317 STIQTISK--PDIYEQFSREHFDYIVFDEAHRVAAASYRRVFNYFT---PEFILGMTATP 371

Query: 231 RRLN 234
            R +
Sbjct: 372 ERND 375


>gi|308158882|gb|EFO61442.1| U5 small nuclear ribonucleoprotein 200 kDa helicase, putative
           [Giardia lamblia P15]
          Length = 1567

 Score = 40.7 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 49/210 (23%), Gaps = 17/210 (8%)

Query: 66  CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS-----TRPGMSIICIANSETQL 120
               V +         ++A  G GKT +  W ++ L+        P    I +A  +  +
Sbjct: 214 VQMRVVDPIFNGGNTLVAAPTGAGKTNIALWAIICLLHTSRYKCHPVQLAIYVAPLKALV 273

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT----- 175
              L    S    +         +          A          +    I   T     
Sbjct: 274 HEVLLQLESSLQRLPKEYVATIYEYTGEESISLNAISSLLHSPQTATTLVILVATPEKLD 333

Query: 176 --YSEERPDTFVGPHNTHGMAVFNDEASGTPDII----NKSILGFFTELNPNRFWIMTSN 229
              S+   + F          +  DE     D       + ++  F         +  S 
Sbjct: 334 VLTSKLTGEDFQTIRGR-LALIVFDELHLIGDHTRGSVVEELVLRFHRHYKETMLLALSA 392

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
           T        D       +   +    R V 
Sbjct: 393 TIPNAQQIADFLQCASSNTLVFDSSYRAVS 422


>gi|322688258|ref|YP_004207992.1| helicase [Bifidobacterium longum subsp. infantis 157F]
 gi|322690268|ref|YP_004219838.1| helicase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|291517673|emb|CBK71289.1| DNA or RNA helicases of superfamily II [Bifidobacterium longum
           subsp. longum F8]
 gi|320455124|dbj|BAJ65746.1| putative helicase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320459594|dbj|BAJ70214.1| putative helicase [Bifidobacterium longum subsp. infantis 157F]
          Length = 1068

 Score = 40.7 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 64/221 (28%), Gaps = 35/221 (15%)

Query: 16  HEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFS-QPHRWQLEFMEAVDVHCHSNVNNSN 74
                  +    FK       P     +  E    QP+  Q E +  +        +   
Sbjct: 221 LTEEWIKQYEEDFK---KYAPPRHEILQSFEGHDIQPNAMQQEALANLKKLREQGEH--- 274

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
               +  I +  G GKT L+A    + +       ++ IA    Q +  L   ++ +  +
Sbjct: 275 ----RAIIVSATGTGKTYLSA----FDVRECQPKRMLYIA----QQQMILQTAMNSYQKV 322

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
           L                         S   D ++   T +T    +P+      +     
Sbjct: 323 LGCD------------ESELGLYSGTSKQQDRRYVFATVQTMR--QPEVLAQFKSDEFDY 368

Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
           V  DE         + ++  F + +      MT+   R +G
Sbjct: 369 VLVDEVHHAGAEGYQRVINHFKDAD--FMLGMTATPERTDG 407


>gi|269963883|ref|ZP_06178195.1| hypothetical protein VME_45790 [Vibrio harveyi 1DA3]
 gi|269831370|gb|EEZ85517.1| hypothetical protein VME_45790 [Vibrio harveyi 1DA3]
          Length = 581

 Score = 40.7 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 23/211 (10%), Positives = 58/211 (27%), Gaps = 35/211 (16%)

Query: 27  SFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFK------C 80
            F N  +      + G P         W++  + ++       +++ +    +      C
Sbjct: 71  DFCNKFLFHIKGELAGSPFLLP----PWEIFLLGSIFGWRKKRLSSYSKKKLRRFKTAEC 126

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRP--GMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
            ++  R  GK+ + + +M+W +      G  I   A +  Q +     +  + L   P  
Sbjct: 127 WVA--RKNGKSFIASAVMIWCLLFDSENGSEIYSAATTRDQAR-ITADDAMRILRGSPLA 183

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                            ++ +  + +   H  +   +      D        +      D
Sbjct: 184 QL--------------CKINKYHVEVPETHGVLRALSADGGSLD------GLNVHLGVLD 223

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSN 229
           E           ++   T         + S 
Sbjct: 224 ELHAHKQRDVYDVITTATGAREQPIIFVIST 254


>gi|149237126|ref|XP_001524440.1| hypothetical protein LELG_04412 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146451975|gb|EDK46231.1| hypothetical protein LELG_04412 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 536

 Score = 40.7 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 38/123 (30%), Gaps = 12/123 (9%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              ++   G+GKT + + +ML  +   P   I+ +A ++          V++ +      
Sbjct: 148 NLLVALPTGLGKTFIASTVMLNFLRWFPKSKIVFMAPTK--------PLVAQQIKACCSI 199

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                  +++       E  +    I +            E    F   +      +  D
Sbjct: 200 TGIPASKVAILL----DETRKNRGEIWNSRQVFFTTPQVVENDLAFGLVNPKSISLLVID 255

Query: 199 EAS 201
           EA 
Sbjct: 256 EAH 258


>gi|109391899|ref|YP_655149.1| gp53 [Mycobacterium phage Orion]
 gi|88910441|gb|ABD58369.1| gp53 [Mycobacterium phage Orion]
 gi|255928272|gb|ACU41889.1| gp52 [Mycobacterium phage Puhltonio]
          Length = 567

 Score = 40.7 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/169 (11%), Positives = 45/169 (26%), Gaps = 13/169 (7%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q E +EA++ H    V        +  +    G GK+T+     +     R    ++
Sbjct: 10  RPYQREAVEAIESHWSQGVT-------RVGVVLPTGTGKSTVIGRTAVNGYQNREP--VL 60

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +A+    +             + P      +  +        A ++  ++   +  +  
Sbjct: 61  MVAHRGELIDQMAGTIF----EVDPSIPRSHVGIVRAEMDDHSAPIVVATLQTLATAHRR 116

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220
               +        V      G      E  G  D +           + 
Sbjct: 117 EAVGFRRRILWDEVHHAGAEGFHTTFTELGGYTDALFAGFTATMRRDDK 165


>gi|7507255|pir||T33655 hypothetical protein T06A10.1 - Caenorhabditis elegans  (fragment)
 gi|25396141|pir||D88912 protein T06A10.1 [imported] - Caenorhabditis elegans
          Length = 1031

 Score = 40.7 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/158 (11%), Positives = 45/158 (28%), Gaps = 13/158 (8%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPG--MSIICIANSETQLKNTLWAEVSKWLSMLPH 137
             + A  G GKT + + + +  + +R      +I    +          E+S  +     
Sbjct: 52  MLVQAKSGTGKTLVFSVLAVENLDSRSSHIQKVIVT-PT---------REISVQIKETVR 101

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
           +        S++  G   +L    +   ++   +        +       + +H      
Sbjct: 102 KVAPTGARTSVYVGGSAHKLNLIDLK-QTRPQIVIGTPGRIAQLVKLGAMNMSHVDFFVL 160

Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
           DEA    D + +  +       P    +   +      
Sbjct: 161 DEADKLMDEVFRDDINIIINSLPQIRQVAVFSATYPRN 198


>gi|325186784|emb|CCA21330.1| PREDICTED: similar to activating signal cointegrator 1 complex
            subunit 3 putative [Albugo laibachii Nc14]
          Length = 2134

 Score = 40.7 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 41/160 (25%), Gaps = 11/160 (6%)

Query: 80   CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
              + A  G GKT    + ML  +S R    +I +      L+    +  ++W  +    H
Sbjct: 1269 VLLCAPNGSGKTLCAEFAMLRALSMRTRKWMIYVTP----LQEIALSTANRWRRVFEDEH 1324

Query: 140  W-------FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
                    F+  S S   S +   +              T     E      +       
Sbjct: 1325 TVKCGIWCFDSGSRSSSISEFEYAIGRPQDVHGMGIIVTTAGRLDELLRRPIMKQIFPEL 1384

Query: 193  MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232
              V  D+     D     +                S+  R
Sbjct: 1385 ALVIVDDLHFITDPNVGPLYEIVLSRLARVESGRLSDPTR 1424


>gi|260948128|ref|XP_002618361.1| hypothetical protein CLUG_01820 [Clavispora lusitaniae ATCC 42720]
 gi|238848233|gb|EEQ37697.1| hypothetical protein CLUG_01820 [Clavispora lusitaniae ATCC 42720]
          Length = 1910

 Score = 40.7 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 34/125 (27%), Gaps = 14/125 (11%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLIS-TRPGMSIICIANSETQLKNTLWAEVSKWL-SMLP 136
               + +  G GKT + A + +W      PG  ++ IA  +  ++      V  W   +  
Sbjct: 1129 NVFVGSPTGSGKT-VVAELAIWHAFKEFPGSKVVYIAPMKALVRER----VDDWRTRLCK 1183

Query: 137  HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
                  ++                 +    + +    R +   +              V 
Sbjct: 1184 PTGRKLVELTGDSLPEARDVRESDIIITTPEKFDGISRNWQTRKFV-------QEISLVI 1236

Query: 197  NDEAS 201
             DE  
Sbjct: 1237 MDEIH 1241


>gi|242021722|ref|XP_002431292.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212516560|gb|EEB18554.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 591

 Score = 40.7 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 23/197 (11%), Positives = 52/197 (26%), Gaps = 25/197 (12%)

Query: 15  LHEMLMHAECVLSFKNFVM--RFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNN 72
           L+E     + +L  + +           KG     F +P   Q + +             
Sbjct: 10  LNEKPRTDDVILDDEIYFKDLLLSDLTFKGLESCGFRKPSPVQRKAI------------P 57

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR-PGMSIICIANSETQLKNTLWAEVSKW 131
                F   + A  G GKT +   + L ++ +    + ++ ++ +          E+S  
Sbjct: 58  LGRCGFDLIVQAKSGTGKTCVFTIVALEMMDSDSDNLQVLILSPT---------REISVQ 108

Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
           +  +        ++L +        L+        K           +            
Sbjct: 109 IKDVISAIGKNFKNLKVSAFIGGMPLV-TDKKNIKKCQIAVGAPGRVKHLIEEGSMKVDS 167

Query: 192 GMAVFNDEASGTPDIIN 208
                 DEA    +   
Sbjct: 168 IRLFVLDEADKLMEESF 184


>gi|206600344|ref|YP_002241364.1| gp54 [Mycobacterium phage Chah]
 gi|206287432|gb|ACI12774.1| gp54 [Mycobacterium phage Chah]
 gi|282721535|gb|ADA83982.1| gp53 [Mycobacterium phage Scoot17C]
          Length = 598

 Score = 40.7 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 19/169 (11%), Positives = 45/169 (26%), Gaps = 13/169 (7%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q E +EA++ H    V        +  +    G GK+T+     +     R    ++
Sbjct: 41  RPYQREAVEAIESHWSQGVT-------RVGVVLPTGTGKSTVIGRTAVNGYQNREP--VL 91

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +A+    +             + P      +  +        A ++  ++   +  +  
Sbjct: 92  MVAHRGELIDQMAGTIF----EVDPSIPRSHVGIVRAEMDDHSAPIVVATLQTLATAHRR 147

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220
               +        V      G      E  G  D +           + 
Sbjct: 148 EAVGFRRRILWDEVHHAGAEGFHTTFTELGGYTDALFAGFTATMRRDDK 196


>gi|327355031|gb|EGE83888.1| DNA replication helicase Dna2 [Ajellomyces dermatitidis ATCC 18188]
          Length = 1653

 Score = 40.7 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 35/118 (29%), Gaps = 3/118 (2%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKTT  A ++        G S++  + + T + N L       +  L      ++   
Sbjct: 1141 GTGKTTTIAHII--RALISQGKSVLLTSYTHTAVDNILLKVKDDNIRTLRLGATTKIHPD 1198

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                +   A   +    +   +        +    +     ++        DEAS   
Sbjct: 1199 VQKFADLAATPKKTIEELRDIYENSRIVATTCLGINHP-IFNSRTFDYCIVDEASQIT 1255


>gi|310819811|ref|YP_003952169.1| phage terminase, ATPase subunit [Stigmatella aurantiaca DW4/3-1]
 gi|309392883|gb|ADO70342.1| phage terminase, atpase subunit [Stigmatella aurantiaca DW4/3-1]
          Length = 433

 Score = 40.7 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 61/215 (28%), Gaps = 20/215 (9%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
            N + F+  ++  R +G + L A   L     R G + + ++ + +     +        
Sbjct: 63  DNRSRFR-WVAKSRQVGFSFLFALEALARCHLRDGHTAVFVSYNLSDAVEKV-------- 113

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
             L  R  +E   L+           E +   ++K      R  S         P    G
Sbjct: 114 --LIARQVYEELPLAFKKKLVTDAKTELAFESNAK-----GRRLSRIISVPSKPPRGKRG 166

Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY- 251
            A  ++ A    D    +          +      S      G F++I +  L  +  + 
Sbjct: 167 DAYLDELAHYVNDREVYTGSTALILR-SHGQLTGCSTPLGRRGIFWEIASQELRKYPHHT 225

Query: 252 --QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
             Q+                +    + ++   +  
Sbjct: 226 RQQVPWWLCRFFSLDVRRAAVEAPLMSTEERVVRF 260


>gi|300675501|gb|ADK26420.1| polyprotein [Dengue virus 3]
 gi|316983435|gb|ADU76207.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.7 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 47/185 (25%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +    +        T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIADLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|263612920|gb|ACY70760.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.7 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 47/185 (25%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+   +   
Sbjct: 1670 GSGKTRKYLPAIIREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTVTKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|261402374|ref|YP_003246598.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus vulcanius
           M7]
 gi|261369367|gb|ACX72116.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus vulcanius
           M7]
          Length = 404

 Score = 40.7 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 22/185 (11%), Positives = 43/185 (23%), Gaps = 23/185 (12%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
            F +P   Q + +                        A  G GKT   A  ++ LI+   
Sbjct: 25  GFEKPTDIQTKVI-----------PLFLNGEKNIVAQARTGSGKTASFALPLIELINEGE 73

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
           G+  I +  +          E++            +          +    ++  +    
Sbjct: 74  GIKAIILTPTRELAIQVA-DEINS----------LKGNKNLKIVKVYGGTPIQPQIKYLK 122

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNRFWI 225
               +                +         DEA           +       N NR  +
Sbjct: 123 NANIVVGTPGRVLDHINRGTLNLKDVEYFILDEADEMLNMGFIDDVEKILNACNKNRRIL 182

Query: 226 MTSNT 230
           + S T
Sbjct: 183 LFSAT 187


>gi|239613455|gb|EEQ90442.1| DNA replication helicase Dna2 [Ajellomyces dermatitidis ER-3]
          Length = 1575

 Score = 40.7 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 35/118 (29%), Gaps = 3/118 (2%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKTT  A ++        G S++  + + T + N L       +  L      ++   
Sbjct: 1063 GTGKTTTIAHII--RALISQGKSVLLTSYTHTAVDNILLKVKDDNIRTLRLGATTKIHPD 1120

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                +   A   +    +   +        +    +     ++        DEAS   
Sbjct: 1121 VQKFADLAATPKKTIEELRDIYENSRIVATTCLGINHP-IFNSRTFDYCIVDEASQIT 1177


>gi|261194643|ref|XP_002623726.1| DNA replication helicase Dna2 [Ajellomyces dermatitidis SLH14081]
 gi|239588264|gb|EEQ70907.1| DNA replication helicase Dna2 [Ajellomyces dermatitidis SLH14081]
          Length = 1575

 Score = 40.7 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 35/118 (29%), Gaps = 3/118 (2%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKTT  A ++        G S++  + + T + N L       +  L      ++   
Sbjct: 1063 GTGKTTTIAHII--RALISQGKSVLLTSYTHTAVDNILLKVKDDNIRTLRLGATTKIHPD 1120

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                +   A   +    +   +        +    +     ++        DEAS   
Sbjct: 1121 VQKFADLAATPKKTIEELRDIYENSRIVATTCLGINHP-IFNSRTFDYCIVDEASQIT 1177


>gi|322388624|ref|ZP_08062224.1| helicase [Streptococcus infantis ATCC 700779]
 gi|321140544|gb|EFX36049.1| helicase [Streptococcus infantis ATCC 700779]
          Length = 966

 Score = 40.7 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 57/187 (30%), Gaps = 32/187 (17%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           +P++ Q E ++ +     S          K  + +  G GKT L+A    + +       
Sbjct: 235 EPNKMQKEALKGLQAIRDSGKK-------KALVISATGTGKTYLSA----FDVQQFEPKR 283

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           ++ I + E      L   +  +  +L              P          +   + K+ 
Sbjct: 284 MLFIVHREQ----ILQKSLKDFQKVL------------QFPESEGLIYHSGADLTNKKYI 327

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
             T +T S +           +   +  DE         K +       NP  F  MT+ 
Sbjct: 328 FATIQTLSRDSHLNLFTE--NYFDYILIDEVHKAGADSYKKV---MAHFNPEFFLGMTAT 382

Query: 230 TRRLNGW 236
             R +G 
Sbjct: 383 PERTDGQ 389


>gi|263613066|gb|ACY70764.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.7 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 47/185 (25%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+   +   
Sbjct: 1670 GSGKTRKYLPAIIREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTVTKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|194207332|ref|XP_001915885.1| PREDICTED: Fanconi anemia, complementation group M [Equus caballus]
          Length = 2127

 Score = 40.7 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 27/276 (9%), Positives = 70/276 (25%), Gaps = 32/276 (11%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +QL    A                    +    G+GKT + A +M       P   ++
Sbjct: 169 RDYQLRIARA-------------ALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 215

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +A ++  +      ++     ++        +      +    E+      +      +
Sbjct: 216 FMAPTKPLVTQ----QIEACYRVMGIPQPDMAEMTGCIQAFTRKEIWRSKRVLFLTPQVM 271

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASG-TPDIINKSILGFFTELNPNRFWIMTSNT 230
                    P             +  DEA     +     ++    +   +   +  S T
Sbjct: 272 VNDLSRGSCP-------AAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFRILALSAT 324

Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI---DSGFHEGIISRYGLDSDVARIEILGQ 287
              +        I      + ++ +     I           +     +   A  +   Q
Sbjct: 325 P-GSDIKAVQQVITNLLIGQIELRSEDSPDILPYSHERRVEKLVVPLGEELAAIQKAYIQ 383

Query: 288 FPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323
             +   ++ I  N ++    R+        +I+  D
Sbjct: 384 ILETFASSLIQRNVLKR---RDIPSLTKYQIILARD 416


>gi|195013317|ref|XP_001983833.1| GH16116 [Drosophila grimshawi]
 gi|193897315|gb|EDV96181.1| GH16116 [Drosophila grimshawi]
          Length = 1166

 Score = 40.7 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 25/203 (12%), Positives = 52/203 (25%), Gaps = 27/203 (13%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            W    + ++      N+           I    G GKT      +L L+   PG  ++ 
Sbjct: 676 PWFNPQLNSIQKRAIYNILRGESDRIPYVIFGPPGTGKTVTLVETVLQLVYNLPGARVLV 735

Query: 113 IANSETQLKNTLWAEVSKWLS------MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
              S +         +   +        L   +  E   +      + A +    +    
Sbjct: 736 GTPSNSSADLITKRIIDSNVLQPGEFVRLVSHNQVEKDLVPPELMNYCATIEIGILDDSH 795

Query: 167 KHYTITCRTYSEERPDTFVGPH-------------------NTHGMAVFNDEASGTPDII 207
               +T        P  F+G H                   + H   +  DEA    +  
Sbjct: 796 DSIIVTDSGLKLRCPANFLGKHRVTISTCSTLGNFIQMDFPSGHFTHLLIDEAGQCTEP- 854

Query: 208 NKSILGFFTELNPNRFWIMTSNT 230
            ++++            I+  + 
Sbjct: 855 -ETMVPIALVAQKRSQVILAGDP 876


>gi|120610382|ref|YP_970060.1| putative terminase large subunit protein [Acidovorax citrulli
           AAC00-1]
 gi|120588846|gb|ABM32286.1| putative terminase large subunit protein [Acidovorax citrulli
           AAC00-1]
          Length = 539

 Score = 40.7 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 45/336 (13%), Positives = 79/336 (23%), Gaps = 60/336 (17%)

Query: 2   PRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQ--PHRWQLEFM 59
           P ++ TD   E EL   LM  E  L F   + +    G             P+R Q  F+
Sbjct: 21  PTMVPTD---EAELARCLMDPEWRL-FSGCLYQIIVKGESDDDDSFVMPFKPNRAQRRFI 76

Query: 60  EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
             +                +  I   R +G TTL A M L             IA     
Sbjct: 77  MRLWN--------------RNLILKARQLGFTTLIALMWLDHALFNGNQRCGMIAQDRET 122

Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
            +     +V      LP                      ++ +   +        +    
Sbjct: 123 AEAIFRDKVVFAYDHLPEEIRQRF--------PLARASTKELLFAHNNSSLRVATSVRGG 174

Query: 180 RPDTFVGPHNTHGMAVFNDEASGT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
                              E        P    + + G F  +  +   ++ S     +G
Sbjct: 175 TIHRLH-----------VSEFGKICAKFPHKAVEVVTGSFQAVPLSGIIVVESTAEGQDG 223

Query: 236 WFYDIFNIP-----------LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
            FY +                  ++ +                 ++S+   D       +
Sbjct: 224 EFYRMCQRAMALVTGAGRLTASQYRFHFYAWWQDPAYRMDPAGVVVSQELQDYFDEIESL 283

Query: 285 LGQFPQQEVNNFIPHNY------IEEAMSREAIDDL 314
           +G         +            E+ M RE     
Sbjct: 284 MGCTIDTGQRAWYVEKLNNDFAGAEDQMWREYPSTP 319


>gi|89072912|ref|ZP_01159469.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
 gi|89051434|gb|EAR56889.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
          Length = 432

 Score = 40.7 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 27/306 (8%), Positives = 82/306 (26%), Gaps = 42/306 (13%)

Query: 57  EFMEAV-DVHCHSNVNNSNPTIFK---CAISAGRGIGKTTLNAWMMLWLISTRPGMS--- 109
           + +  +           + P   +       A  G GKT   +  ++  +  +P      
Sbjct: 14  KALTEIGYEKLTPVQQKAIPQARRGADILALAQTGTGKTAAFSLPIIQKLIEKPKSKSRF 73

Query: 110 ---IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
               + +A +          E+++ ++   +  + +   ++        ++  Q   ++ 
Sbjct: 74  NVRALILAPT---------RELAEQIANNINE-YAKYTDVNCTAIFGGKKMSSQEKRLEQ 123

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN----KSILGFFTELNPNR 222
               +                   +   +  DEA    D+      + IL          
Sbjct: 124 GVDILVATPGRLIEHMELNNVSLANLEFLVFDEADRMLDMGFIGAIRVILEDIRTKPQTM 183

Query: 223 FWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLD---SDV 279
            +  TS+ +  +     +                T+  +     E        +      
Sbjct: 184 LFSATSSPQMNSLASDILHKPQRITVTPENSTADTIAHVVYPVDEDRKREMLSELIGKKN 243

Query: 280 ARIEILGQFPQQEVNNFI-------------PHNYIEEAMSREAID--DLYAPLIMGCDI 324
            +  ++    ++  N  +               +  + A  R   +  +  A +++  ++
Sbjct: 244 WKQVLVFVNYKESANQLVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKARVMVATEV 303

Query: 325 AGEGGD 330
           A  G D
Sbjct: 304 AARGLD 309


>gi|315657178|ref|ZP_07910062.1| superfamily II DNA or RNA helicase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492281|gb|EFU81888.1| superfamily II DNA or RNA helicase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 931

 Score = 40.7 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 31/316 (9%), Positives = 71/316 (22%), Gaps = 42/316 (13%)

Query: 39  GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98
           G    P++       W       +  H                     G GK+ +    +
Sbjct: 15  GALTDPVQVLLAFQEWAESTGRPLYPHQQEAAERLILEDKHLIAPTPTGSGKSLIGVAAI 74

Query: 99  LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
           LW ++   G      A  +  +    +  V            F   ++ +          
Sbjct: 75  LWSLAR--GGVSYYTAPLKALVSEKFFDLV----------DLFGAANVGMVTGDGSVNAD 122

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG--TPDIINKSILGFFT 216
              +   ++        + ++           +   V  DE      P+          T
Sbjct: 123 APIICATAEILANQALRWGDDL----------NVDTVVMDEFHYYADPERGWAWQAPLLT 172

Query: 217 ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLD 276
                  +++ S T     WF                  +    ++  +    + +    
Sbjct: 173 L--TKTRFVLMSATLGDTSWFAKNLREVTGREVAVLDSAKRPVPLEMSYAAEPLEKILQG 230

Query: 277 SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
                         +     +  +  + A   EA       L +G D      D    + 
Sbjct: 231 LA---------NQDRLPAYVVHPS--QRAAVEEAERIASLDLRLGLD-----SDTAARLK 274

Query: 337 RRGNIIEHIFDWSAKL 352
            + N +     +   L
Sbjct: 275 DQVNTVRFHSSFGKTL 290


>gi|159109491|ref|XP_001705010.1| U5 small nuclear ribonucleoprotein 200 kDa helicase, putative
           [Giardia lamblia ATCC 50803]
 gi|157433087|gb|EDO77336.1| U5 small nuclear ribonucleoprotein 200 kDa helicase, putative
           [Giardia lamblia ATCC 50803]
          Length = 1594

 Score = 40.7 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 51/210 (24%), Gaps = 17/210 (8%)

Query: 66  CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS-----TRPGMSIICIANSETQL 120
               V +         ++A  G GKT +  W M+ L+       RP   ++ +A  +  +
Sbjct: 240 VQMRVVDPIFNGGNTLVAAPTGAGKTNIALWAMICLLHTSRYKCRPAQLVVYVAPLKALV 299

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT----- 175
              L    S +  +         +                     +    I   T     
Sbjct: 300 HEILSQLESSFQRLPKEYTATICEYTGEESISLNTISSLLHCPQTTTALVILVATPEKLD 359

Query: 176 --YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT----ELNPNRFWIMTSN 229
              S+   + F    N     +  DE     D    S++                +  S 
Sbjct: 360 VFTSKLTGEDFQLIRNR-LALIVFDELHLIGDHTRGSVIEELVLRFHRHYQEAMLLALSA 418

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
           T        D       +   +    R V 
Sbjct: 419 TIPNVQQIADFLRCASSNTLAFDSSYRAVS 448


>gi|310778216|ref|YP_003966549.1| PhoH family protein [Ilyobacter polytropus DSM 2926]
 gi|309747539|gb|ADO82201.1| PhoH family protein [Ilyobacter polytropus DSM 2926]
          Length = 435

 Score = 40.7 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 20/183 (10%), Positives = 52/183 (28%), Gaps = 12/183 (6%)

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGR-GIGKTTLNAWMMLWLISTRP-GMSIICIANS 116
           + A +      ++       +     GR G GKT L     L  +  R     +      
Sbjct: 223 VRARNDEQEYAMDLLMDDNIRVITLVGRAGTGKTLLAVATGLEQVVERKKYKKLFIARPI 282

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
               K+               +   +     ++ +  +    ++    +     +     
Sbjct: 283 IPMGKDIG-------YLPGSEKEKLKPWMQPIYDNIDFLSENKEDKAGEKVVMGLESLGL 335

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
            +    T++   +     +  DEA     +  K+I    T    +   + T +  +++  
Sbjct: 336 LKIEALTYIRGRSIPAGFIIIDEAQNLTPLEIKTI---VTRAGEDTKIVFTGDPDQIDSP 392

Query: 237 FYD 239
           + D
Sbjct: 393 YLD 395


>gi|308063540|gb|ADO05427.1| hypothetical protein HPSAT_03445 [Helicobacter pylori Sat464]
          Length = 1604

 Score = 40.7 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 55/203 (27%), Gaps = 41/203 (20%)

Query: 29  KNFVMRFFPWGIKG-------KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81
           ++F+     W            PL    +P   Q+E ++A   +     N          
Sbjct: 144 EDFIYSQIDWEKFDPMQTQGELPLCDKKKPRPHQIEAIKATKEYFSDPKNTRGK-----L 198

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK-----WLSMLP 136
           I A  G GKT  +    L ++        + +A S   L    + E ++     + + + 
Sbjct: 199 IMAC-GTGKTYTS----LKIMEALDPKITLFLAPSIALLSQ-TFREYAQEKSEPFYASIV 252

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGI------------------DSKHYTITCRTYSE 178
                  +           ++    + +                  ++K + I     S 
Sbjct: 253 CSDDKVGKGKKNKNDDGTDDINFSELPLKPSTRPEDILSVHEKAQKENKRFIIFSTYQSA 312

Query: 179 ERPDTFVGPHNTHGMAVFNDEAS 201
            R              +  DEA 
Sbjct: 313 LRIQEAQEVGLGEMDLIICDEAH 335


>gi|307706117|ref|ZP_07642936.1| type III restriction enzyme, res subunit [Streptococcus mitis
           SK321]
 gi|307618517|gb|EFN97665.1| type III restriction enzyme, res subunit [Streptococcus mitis
           SK321]
          Length = 881

 Score = 40.7 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 21/245 (8%), Positives = 54/245 (22%), Gaps = 30/245 (12%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q + ++    +      +         ++A  G GKTT+        +  R     +
Sbjct: 11  RNYQKQVLDNFQEYQADGHVH--------LVAAP-GSGKTTIG-----IELIARFDKPAL 56

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI--DSKHY 169
            +  +   ++      + +      ++    +               +         +  
Sbjct: 57  VLVPT-VTIREQWVDRIRQAFLEDENQVTSLVSQNLKDMKQITIATYQAFHSAMQQVQSQ 115

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                       D            +  DE     +   KS+  F       +   +T+ 
Sbjct: 116 EDNGEVEDFVGFDLLARLKERGVETLCLDECHHLRNEWWKSLEDFRKNYQQLQIISLTAT 175

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
               +            D           E       +        D       +   FP
Sbjct: 176 PPYDSEPELW-------DRYLQMCGEIDQEITVPELVKEDTLCPHQD------FVYICFP 222

Query: 290 QQEVN 294
            +E +
Sbjct: 223 TKEED 227


>gi|52425046|ref|YP_088183.1| hypothetical protein MS0991 [Mannheimia succiniciproducens MBEL55E]
 gi|52307098|gb|AAU37598.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 760

 Score = 40.7 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 47/185 (25%), Gaps = 14/185 (7%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET---QLKNTLWAEVSK 130
            P +F   +    G GKT  +    L        + II +    +   Q          +
Sbjct: 257 EPGLFSLTV--PTGGGKTFTSMAFALEHAKKYGMLRIIYVIPFTSIIEQNAQEFRKAFGE 314

Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE----ERPDTFVG 186
           +       H        L       +L   S   D      T   + E    ++      
Sbjct: 315 FGEAAVLEHHSTFDDEKLLDKDTKDKLKLASENWDMPIVVTTAVQFFESLFADKSSRCRK 374

Query: 187 PHNTHGMAVFNDEASGTPDI----INKSILGFFTELNPNRFWIMTSNTRRLNGW-FYDIF 241
            HN     +  DEA   P      I +SI       + +      +         FY  F
Sbjct: 375 LHNIANSVIILDEAQMLPLNLLLPIMQSIKELARNYHSSIVMCTATQPAIQTQHGFYRGF 434

Query: 242 NIPLE 246
               E
Sbjct: 435 ENVRE 439


>gi|39996964|ref|NP_952915.1| phenylacetate-coenzyme A ligase [Geobacter sulfurreducens PCA]
 gi|39983852|gb|AAR35242.1| phoH family protein [Geobacter sulfurreducens PCA]
 gi|298505981|gb|ADI84704.1| PhoH-related ATPase [Geobacter sulfurreducens KN400]
          Length = 440

 Score = 40.7 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 44/154 (28%), Gaps = 10/154 (6%)

Query: 87  GIGKTTLN-AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
           G GKT L  A  +           ++         ++ L          L    W +   
Sbjct: 256 GTGKTLLAIAAGLHKTAEENVYNRLLVSRPVFPMGRD-LGFLPGDIEEKL--TPWMQPIF 312

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
            ++       E  +        +  +      +  P T++   +     +  DEA     
Sbjct: 313 DNVELLLSGHEAEK---RHSKGYKELMAMGIMDIEPLTYIRGRSIPLQFMIVDEAQNLTP 369

Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
              K+I    T        ++T +  +++  + D
Sbjct: 370 HEIKTI---ITRAGEGTKIVLTGDPYQIDNPYVD 400


>gi|301786799|ref|XP_002928821.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group M protein-like
           [Ailuropoda melanoleuca]
          Length = 2048

 Score = 40.7 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 19/196 (9%), Positives = 52/196 (26%), Gaps = 13/196 (6%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
               +    G+GKT + A +M       P   ++ +A ++  +      ++     ++  
Sbjct: 108 CNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQ----QIEACYRVMGI 163

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
                 +      +    E+      +      +         P             +  
Sbjct: 164 PQSHMAEMTGSTQAFIRKEIWRSKRVLFLTPQVMVNDLSRGACP-------AAEIKCLVI 216

Query: 198 DEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256
           DEA     +     ++    +   +   +  S T   +        I      + ++ + 
Sbjct: 217 DEAHKALGNYAYCQVVRELVKYTNHFRILALSATP-GSDIKAVQQVITNLRIGQIELRSE 275

Query: 257 TVEGIDSGFHEGIISR 272
               I    HE  + +
Sbjct: 276 DSPDILPYSHERQVEK 291


>gi|298346309|ref|YP_003718996.1| helicase [Mobiluncus curtisii ATCC 43063]
 gi|298236370|gb|ADI67502.1| helicase [Mobiluncus curtisii ATCC 43063]
          Length = 931

 Score = 40.7 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 23/211 (10%), Positives = 47/211 (22%), Gaps = 26/211 (12%)

Query: 39  GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98
           G    P+E       W       +  H                     G GK+ +    +
Sbjct: 15  GALTDPVEVLLAFQEWAESTGRPLYPHQQEAAERLILEDKHLIAPTPTGSGKSLIGVAAI 74

Query: 99  LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
           LW ++   G      A  +  +    +  V            F   ++ +          
Sbjct: 75  LWSLAR--GGVSYYTAPLKALVSEKFFDLV----------DLFGAANVGMVTGDGSVNAD 122

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG--TPDIINKSILGFFT 216
              +   ++        + ++           +   V  DE      P+          T
Sbjct: 123 APIICATAEILANQALRWGDDL----------NVDTVVMDEFHYYADPERGWAWQAPLLT 172

Query: 217 ELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
                  +++ S T     WF          
Sbjct: 173 L--TKTRFVLMSATLGDTTWFAKNLREVTGR 201


>gi|239624401|ref|ZP_04667432.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520787|gb|EEQ60653.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 468

 Score = 40.7 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 43/178 (24%), Gaps = 7/178 (3%)

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GMSIICIANSETQLK 121
                +           +    G  KT     + L  +   P      II    +  Q  
Sbjct: 253 FLQEALMQPAEQAPLVIVKGMAGTAKTFYTLAVGLEKLLNNPTGEYRRIIISRPN-AQFD 311

Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
             +          +       + +L         +  E    +  K   I  R   +   
Sbjct: 312 TDIGFLPGDEQEKISPLMRPVIDNLEQLIDSCEEKRYENETELKGKVDEIFDRGLIQAEA 371

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
             F+   +     +  DEA          + G  T        I+  +  +++  F D
Sbjct: 372 LNFIRGRSIVRTYLIIDEAQNMTPAQ---VKGIITRAGKGTKIILLGDPNQIDRNFLD 426


>gi|254465635|ref|ZP_05079046.1| EcoEI R C-terminal domain protein [Rhodobacterales bacterium Y4I]
 gi|206686543|gb|EDZ47025.1| EcoEI R C-terminal domain protein [Rhodobacterales bacterium Y4I]
          Length = 816

 Score = 40.7 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/196 (8%), Positives = 49/196 (25%), Gaps = 14/196 (7%)

Query: 45  LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
                +P  +Q+  + A         +       +  +    G GKT   A+ ++W +  
Sbjct: 158 FASGKEPRYYQMNAVNASIEAIAKGRD-------RLLLVMATGTGKTF-TAFQIIWRLWK 209

Query: 105 -RPGMSIICIANSETQLKNTLWAEVSKWLSMLPH-----RHWFEMQSLSLHPSGWYAELL 158
                 ++ +A+    +  T+  +   ++  +       +            +       
Sbjct: 210 SGKKKRVLFLADRNVLVDQTMVNDFRPFIGSMAKLSTNAKTIERPDGTEEELTLAMDRRR 269

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218
             +   +         T   E    +          +  DE        + +        
Sbjct: 270 RINTAYEIYLGLYQALTGPRESQKIYRELSPDFFDLIIIDECHRGSAAEDSAWREILEHF 329

Query: 219 NPNRFWIMTSNTRRLN 234
           +      +T+  +   
Sbjct: 330 SSATQIGLTATPKETE 345


>gi|119487463|ref|XP_001262524.1| RNA helicase/RNAse III, putative [Neosartorya fischeri NRRL 181]
 gi|158705692|sp|A1D9Z6|DCL2_NEOFI RecName: Full=Dicer-like protein 2; Includes: RecName:
           Full=Endoribonuclease dcl2; Includes: RecName:
           Full=ATP-dependent helicase dcl2
 gi|119410681|gb|EAW20627.1| RNA helicase/RNAse III, putative [Neosartorya fischeri NRRL 181]
          Length = 1388

 Score = 40.7 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 25/201 (12%), Positives = 53/201 (26%), Gaps = 30/201 (14%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI-ST 104
               QP  +QLE +EA                    ++   G GKT +    +   +   
Sbjct: 11  ASPYQPRNYQLEMLEA-------------SMKENIIVAMDTGSGKTHIAVLRIKAELDIC 57

Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
            P   +  +A +   L       ++  L  +  R    +  + L       + +      
Sbjct: 58  PPDKLVWFLAPTVA-LCIQQHEVIASNLPAVRTRTLTGLDKVELWTEQSIWDAVL----- 111

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS------ILGFFTEL 218
            + +  I           +      +    +  DEA         +           T+ 
Sbjct: 112 -NGYRVIVSTHAVLADALSHGFVKMSRLALLIFDEAHHCTRRHAANKIMRDFYHPTLTKS 170

Query: 219 NP---NRFWIMTSNTRRLNGW 236
            P    R   +T++    +  
Sbjct: 171 GPGAVPRIMGLTASPVVRSNH 191


>gi|108864385|gb|ABG22485.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1132

 Score = 40.7 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 21/188 (11%), Positives = 46/188 (24%), Gaps = 8/188 (4%)

Query: 99  LWLISTRPGMSIICIANSETQLKNT--LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
           L+++       +    +   Q      +  E+     +LP +         L PS     
Sbjct: 127 LYIMEQFHDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVVGCIIAKLPPS----- 181

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII-NKSILGFF 215
                   +   Y     T  +++      P+          +          +  +   
Sbjct: 182 WRSFGPEQEKGKYKAQQTTNFKKQKKNNNNPNQDERTCFVCGQPGHLARKCPQRKGMKTP 241

Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275
           T        +   NT   +G+    F+ P  +W             +  F +   +    
Sbjct: 242 TSQTSKSANVTIGNTGDRSGYGRTGFHRPSGEWVTCFYSWCWHGRYEVYFGKDRAAEERA 301

Query: 276 DSDVARIE 283
                R E
Sbjct: 302 TCPFYRQE 309


>gi|85858291|ref|YP_460492.1| superfamily I DNA/RNA helicase [Syntrophus aciditrophicus SB]
 gi|85721382|gb|ABC76325.1| superfamily I DNA and RNA helicase [Syntrophus aciditrophicus SB]
          Length = 287

 Score = 40.7 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 57/227 (25%), Gaps = 14/227 (6%)

Query: 15  LHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSN 74
           + E L  A    S +  V        + K L   + P  W    +E+++     ++   +
Sbjct: 12  MAEALHLAMAYFSLERDVFISHWLPERQKELARQTTPESW-RNIVESLNNPVQQHIVTDD 70

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLIS-TRPGMS-IICIANSETQLKNTLWAEVSKWL 132
                  + AG G GKT +    + +L+   R     I+ +A +                
Sbjct: 71  REKTNVLVLAGPGSGKTRVLVHRIAYLVRVKRENARGILALAYNRHAAVEIRRRLADLIG 130

Query: 133 SMLPHRHWFEMQSLSLHPSG---WYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189
                       +L++  +G        +                   E  P        
Sbjct: 131 DDARGVTVLTCHALAMRLAGVSFAGHTEMLDDDAFKKVLQQAVALLKREGLPPEEADEQR 190

Query: 190 THGMA----VFNDEASGTPDIINKSILGFF----TELNPNRFWIMTS 228
              +A    +  DE         + I         + +         
Sbjct: 191 DRLLAGFRWILVDEYQDIGPEQYELISALAGRTSQDEDGRLSLFAVG 237


>gi|88803430|ref|ZP_01118956.1| putative phosphate starvation-inducible PhoH-like protein
           [Polaribacter irgensii 23-P]
 gi|88780996|gb|EAR12175.1| putative phosphate starvation-inducible PhoH-like protein
           [Polaribacter irgensii 23-P]
          Length = 317

 Score = 40.7 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 42/144 (29%), Gaps = 17/144 (11%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKT     + +  +  +    II    +    +N            L        + L
Sbjct: 136 GTGKTYTAVALAVKALKEKEVRKIILTRPAVESGEN------------LGFLPGDLKEKL 183

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
             +    Y  L  + M    +  +   +   +  P  F+         V  DEA  T   
Sbjct: 184 DPYMQPLYDAL--RDMIPHERLESHIEKGIIQIAPLAFMRGRTLDNAFVILDEAQNTTHN 241

Query: 207 INKSILGFFTELNPNRFWIMTSNT 230
             K      T +  +  +I+T + 
Sbjct: 242 QMKMF---LTRMGKSAKFIITGDP 262


>gi|303244918|ref|ZP_07331244.1| helicase domain protein [Methanothermococcus okinawensis IH1]
 gi|302484735|gb|EFL47673.1| helicase domain protein [Methanothermococcus okinawensis IH1]
          Length = 797

 Score = 40.7 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 21/197 (10%), Positives = 50/197 (25%), Gaps = 14/197 (7%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
           G G+GKT + A + +  + ++    ++ +A S           V +  + L +   F   
Sbjct: 36  GTGLGKTAI-ATLTIAGMLSKKDGKVLIVAPSR--------PLVEQHYNSLKN---FLNI 83

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                          +   +  +           E        +    M +  DEA  T 
Sbjct: 84  DEDKIIVLTGKIAPSKRKKMWEEGQIFIATPQIVENDIVANRVNTNDFMLLIADEAHHTT 143

Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264
              + + +      N      +T++         +I      +    +      +  D  
Sbjct: 144 GNHSYTFVASVF-RNKAHVLGLTASPGSNIDKILEICENLGIEHVEIR-TYDDADVRDYV 201

Query: 265 FHEGIISRYGLDSDVAR 281
               +            
Sbjct: 202 KTVKLRPVKVELPKEYE 218


>gi|296450396|ref|ZP_06892152.1| ATP-dependent RNA helicase DeaD [Clostridium difficile NAP08]
 gi|296879481|ref|ZP_06903475.1| ATP-dependent RNA helicase DeaD [Clostridium difficile NAP07]
 gi|296260657|gb|EFH07496.1| ATP-dependent RNA helicase DeaD [Clostridium difficile NAP08]
 gi|296429627|gb|EFH15480.1| ATP-dependent RNA helicase DeaD [Clostridium difficile NAP07]
          Length = 497

 Score = 40.7 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 20/235 (8%), Positives = 52/235 (22%), Gaps = 13/235 (5%)

Query: 60  EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-SIICIANSET 118
             +       V           + +  G GKT   A  +   I+        + +  +  
Sbjct: 23  YNIPSRVQIEVIPKLLNGQNLVVKSKTGSGKTASFAIPLCENINVEYNNIQALIVVPTRE 82

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
                   E+S    +   R         +               +  + + +       
Sbjct: 83  LALQV-KDEISSIGRLRKVRCSAIFGKQPIKEQIA---------ELKQRVHIVVATPGRI 132

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNT-RRLNGW 236
                           +  DEA         + +      L   +   + S T      +
Sbjct: 133 IDHINKGTIKLEDIKYLIIDEADKMFNKGFVEQMEKILLNLPKEKIVGLFSATIDEEIKY 192

Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
             + +          +  + T +       + I +       + +  I  + P+ 
Sbjct: 193 ICEKYIPDYSVINIEENKSDTNQRTRQIDDKIIKTNEREKYILLKELIYSENPKS 247


>gi|195014606|ref|XP_001984044.1| GH15223 [Drosophila grimshawi]
 gi|193897526|gb|EDV96392.1| GH15223 [Drosophila grimshawi]
          Length = 675

 Score = 40.7 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 49/159 (30%), Gaps = 16/159 (10%)

Query: 60  EAVDVHCHSNVNNSNPTIFK-CAISAGRGIGKTTLNAWMMLWLISTRPGMS-----IICI 113
            AV        +   P   +   +SA  G GKT   A  ++ L++ R         ++ +
Sbjct: 168 RAVIPWILEAQSKPAPFRPRDICVSAPTGSGKTLAFAIPIVQLLANRVECKVRALVVLPV 227

Query: 114 ANSETQLKN---TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           A    Q+      L ++    + +L  +H  E +   L          +  +        
Sbjct: 228 AELALQVYKVFSVLCSKTELEVCLLSKQHRLEDEQEKLLEQYKGVYYSKVDI-------V 280

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209
           +T      +      G        +  DEA    D + +
Sbjct: 281 VTTPGRLVDHLHATEGFCLKSLQFLVIDEADRIMDAVFQ 319


>gi|32442174|gb|AAP82049.1| putative mating pair formation protein [Stenotrophomonas
           maltophilia]
          Length = 330

 Score = 40.7 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 15/115 (13%), Positives = 32/115 (27%), Gaps = 7/115 (6%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
           +     +  G G GKTTL+  ++  +    P   I+ I ++         A V + +  +
Sbjct: 153 SRKNILVVGGTGSGKTTLSNAIIHAISQEHPNDRILIIEDTGELQCAAANAVVMRAVEDV 212

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
                 +             E+                  ++   P      H+ 
Sbjct: 213 TMERLLKASLRLRPDRILVGEV-------RDGSALTLIEAWNTGHPGGIATIHSD 260


>gi|15836655|ref|NP_297343.1| DNA-dependent helicase II [Xylella fastidiosa 9a5c]
 gi|9104818|gb|AAF82863.1|AE003859_4 DNA helicase II [Xylella fastidiosa 9a5c]
          Length = 728

 Score = 40.7 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 78/294 (26%), Gaps = 32/294 (10%)

Query: 62  VDVHCHSNVNNSNPTIF-KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
           V  H + N   +         I AG G GKT +    ++WL              + + +
Sbjct: 6   VLDHLNQNQREAVAAAPGHYLILAGAGSGKTRVLTHRIVWLNEVH-------GVPTHSMM 58

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
             T     +K    +  R   +++        W       +  +   H+       + + 
Sbjct: 59  AVTF---TNKAAGEIQQRIDLQLRHGKRGM--WIGTFHSLAHRLLRLHWNDATLPENFQV 113

Query: 181 PDTFVGPHNTHGM---AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
            D+         +      ND     P       +    +       I        + W 
Sbjct: 114 IDSDDQLRLVKRVIQSLGLNDTL--FPPKQAMWWINTQKDEGRRPEHI---QPESHDDWI 168

Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297
                     +  YQ        +D             D+         +F +  ++ F 
Sbjct: 169 ----ETQRRIYAEYQERCNRAGLVDFAELLLRAHELLRDTPALLTHYRSRFREILIDEFQ 224

Query: 298 PHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
             N I+ A  R   ++     ++       G D   +   RG  +EH+  +   
Sbjct: 225 DTNAIQYAFVRILANETGH--VIAV-----GDDDQAIYGWRGAKVEHVQHFLKD 271


>gi|308184455|ref|YP_003928588.1| type II R-M system protein [Helicobacter pylori SJM180]
 gi|308060375|gb|ADO02271.1| type II R-M system protein [Helicobacter pylori SJM180]
          Length = 677

 Score = 40.7 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 52/198 (26%), Gaps = 35/198 (17%)

Query: 29  KNFVMRFFPWGIKG-------KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81
           ++F+     W            PL    +P   Q E +E    +  +  N          
Sbjct: 145 EDFIYSRIDWEKFDPTKTEDEIPLCDKKRPRPHQTEAIEKTKEYFSNPKNARGK-----L 199

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML------ 135
           I A  G GKT  +    L ++        + +A S   L  T      +           
Sbjct: 200 IMAC-GTGKTYTS----LKIMEALEPKITLFLAPSIALLSQTFREYAQEKSEPFYASIVC 254

Query: 136 ----------PHRHWFEMQSLSLHPSGWYAELLEQSMGI--DSKHYTITCRTYSEERPDT 183
                           +   L +  S    ++L     +  ++K + I     S  R   
Sbjct: 255 SDDKVGKSKDEDNDDIKFSELPIKASTRLEDILSVYEKVQKENKRFIIFSTYQSALRIKE 314

Query: 184 FVGPHNTHGMAVFNDEAS 201
                      +  DEA 
Sbjct: 315 AQEAGLNGIDLIICDEAH 332


>gi|291334806|gb|ADD94448.1| phage terminase GpA [uncultured phage MedDCM-OCT-S05-C64]
          Length = 513

 Score = 40.7 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 23/242 (9%), Positives = 63/242 (26%), Gaps = 19/242 (7%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           +P  W+ +      +       +S  ++ +  +      GKT +    + W+I   PG  
Sbjct: 37  EPGPWRTD--RTPYLRQVMRDLSSESSVQRVVLMFSAQSGKTEVGLNWLAWIIDHSPGP- 93

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           ++ +  +    +      +   +   P                  A    +         
Sbjct: 94  LLAVQPTIEMARRMSKQRLEGLIEDTP------------RLKEKIAPPRSRDGSNSMFAK 141

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN----PNRFWI 225
                       ++     +     +F DE     +I  +       E        R  +
Sbjct: 142 DFPGGILLLTGANSPSQLRSAPCRYLFMDEVDAMQEIPGEGDPVALAERRTTTFARRKVL 201

Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
           +TS     +    +   +  +  K +       E     +      +   ++   + +  
Sbjct: 202 LTSTPTVKDFSKIEAEYMKSDQRKFWIPAPCCGEFQHLEWSRLKWEKDRPETAQYQCKHC 261

Query: 286 GQ 287
           G+
Sbjct: 262 GE 263


>gi|325171219|ref|YP_004251191.1| hypothetical protein ViPhICP2p20 [Vibrio phage ICP2]
 gi|323512245|gb|ADX87702.1| conserved hypothetical protein [Vibrio phage ICP2]
          Length = 508

 Score = 40.7 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 25/217 (11%), Positives = 57/217 (26%), Gaps = 17/217 (7%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF-EM 143
            RG  K+ + A  + W ++  P  +I+ I+ +    +  L+   +   S +  R+W   +
Sbjct: 51  PRGHLKSHMMALWVAWWVTKHPETTILYISATSELAEMQLYDIKNIMTSKIYRRYWPDMI 110

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
                    W    +                  +        G H      V   +    
Sbjct: 111 NEEEGKREKWTNSAIAVDHPKRKMEGVRDFTIKTAGLTTNTTGWHAD----VIISDDVVV 166

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGW-----FYDIFNIPLEDWKRYQIDTRTV 258
           PD          TE    +     S    +               P + +  ++   + V
Sbjct: 167 PDNAY-------TEDGRRKVAAAMSQMESILNADGIVKACGTRYHPADIYDTWKNQHQPV 219

Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN 295
                         + +   V   + +  +P+    +
Sbjct: 220 FDEHGEETGEERPVWDIFERVVEEDGVFLWPRTSRGS 256


>gi|206602216|gb|EDZ38698.1| Putative phosphate starvation-inducible protein (PhoH)
           [Leptospirillum sp. Group II '5-way CG']
          Length = 331

 Score = 40.7 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 59/198 (29%), Gaps = 23/198 (11%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKT L   M ++ +       II +  +             +    L        + +
Sbjct: 138 GTGKTYLAMAMAVFYLLKHSFRRIILVRPA------------VEAGEKLGFLPGDIAEKI 185

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
           + +    Y  L    M    K   +  +   E  P  F+     +   V  DEA    + 
Sbjct: 186 NPYLRPLYDALF--DMIDVDKVNRMIDKREIEIAPLAFMRGRTLNDSFVILDEAQ---NA 240

Query: 207 INKSILGFFTELNPNRFWIMTSN------TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
             + +  F T +  N   ++T +       +       ++ NI         +    V+ 
Sbjct: 241 TIEQMKMFLTRIGFNSKAVITGDVTQIDLPQGRTSGLIEVQNILKNISGIEFLYFNEVDV 300

Query: 261 IDSGFHEGIISRYGLDSD 278
           +     + II  Y    +
Sbjct: 301 VRHRLVQEIIKAYERYEN 318


>gi|124515712|gb|EAY57221.1| putative phosphate starvation-inducible protein (PhoH)
           [Leptospirillum rubarum]
          Length = 331

 Score = 40.7 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 59/198 (29%), Gaps = 23/198 (11%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKT L   M ++ +       II +  +             +    L        + +
Sbjct: 138 GTGKTYLAMAMAVFYLLKHSFRRIILVRPA------------VEAGEKLGFLPGDIAEKI 185

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
           + +    Y  L    M    K   +  +   E  P  F+     +   V  DEA    + 
Sbjct: 186 NPYLRPLYDALF--DMIDVDKVNRMIDKREIEIAPLAFMRGRTLNDSFVILDEAQ---NA 240

Query: 207 INKSILGFFTELNPNRFWIMTSN------TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
             + +  F T +  N   ++T +       +       ++ NI         +    V+ 
Sbjct: 241 TIEQMKMFLTRIGFNSKAVITGDVTQIDLPQGRTSGLIEVQNILKNISGIEFLYFNEVDV 300

Query: 261 IDSGFHEGIISRYGLDSD 278
           +     + II  Y    +
Sbjct: 301 VRHRLVQEIIKAYERYEN 318


>gi|17507621|ref|NP_491574.1| hypothetical protein F55A12.8 [Caenorhabditis elegans]
 gi|21363098|sp|O01757|YIL8_CAEEL RecName: Full=UPF0202 protein F55A12.8
 gi|2088668|gb|AAB54126.1| Hypothetical protein F55A12.8 [Caenorhabditis elegans]
          Length = 1043

 Score = 40.7 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 44/153 (28%), Gaps = 15/153 (9%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
              Q + +           +N       C+++AGRG GK+     + L         +I 
Sbjct: 255 TACQAKALLRFLDVITEKQSNVT-----CSLTAGRGRGKSAAV-GLSLAGAIAFGYTNIF 308

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             + S   LK      V  +          + Q  + +     A    ++  +    +  
Sbjct: 309 VTSPSPENLKTLFEFVVKGF-------DALDYQEHTDYELIQSANPEFKNCLVRINVFRE 361

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
             +T     P             +  DEA+  P
Sbjct: 362 HKQTIQYISPTDVQKLG--QCELIVIDEAAAIP 392


>gi|323487890|ref|ZP_08093148.1| DNA/RNA helicase [Planococcus donghaensis MPA1U2]
 gi|323398624|gb|EGA91412.1| DNA/RNA helicase [Planococcus donghaensis MPA1U2]
          Length = 809

 Score = 40.7 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 44/185 (23%), Gaps = 36/185 (19%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P   Q E +EA+D               +  +    G+GKT L A+             +
Sbjct: 215 PRPAQEEALEALDNVLAE-------EYSRAMVVLATGLGKTYLAAFFAAKF------KRV 261

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + +A+ E  L                       +    H           +   D+    
Sbjct: 262 LFVAHREEILTQ--------------------AEQSFKHVHPNRTSSFYNASEKDTAADF 301

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
           +    Y+                 +  DE           +        P     +T+  
Sbjct: 302 VFASIYTLSSQYHLDRFEKDAFDLIVVDEFHHAAAPTYGRL---LNHFEPKFMLGITATP 358

Query: 231 RRLNG 235
            R++ 
Sbjct: 359 DRMDN 363


>gi|304395420|ref|ZP_07377303.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
 gi|304356714|gb|EFM21078.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
          Length = 460

 Score = 40.7 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 57/223 (25%), Gaps = 22/223 (9%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR--------GIGKTTLNAWMMLWLI-STR 105
           QL+ +  +     + V  +       AI  GR        G GKT      +L  I STR
Sbjct: 14  QLDNLREMGYTSMTPVQAATLP----AILQGRDVRAQAKTGSGKTAAFGIGLLHHIDSTR 69

Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
                + +  +                ++L     F      L   G      ++   + 
Sbjct: 70  FQTQALILCPTRELADQV--------GNVLRQLARFTRNIKVLTLCGGQPMSAQRDSLVH 121

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225
              + +                       +  DEA    ++   + +    E  P     
Sbjct: 122 P-PHIVVGTPGRILDHINRENLKLDQLNTLVLDEADRMLEMGFLNDMETIIEATPASRQT 180

Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG 268
           +  +    +G          +       +   +  ID  F E 
Sbjct: 181 LLFSATWPDGITAISTRFQRDALSVVTEEVSELPSIDQQFFEA 223


>gi|302896542|ref|XP_003047151.1| hypothetical protein NECHADRAFT_46398 [Nectria haematococca mpVI
           77-13-4]
 gi|256728079|gb|EEU41438.1| hypothetical protein NECHADRAFT_46398 [Nectria haematococca mpVI
           77-13-4]
          Length = 971

 Score = 40.7 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 32/247 (12%), Positives = 67/247 (27%), Gaps = 33/247 (13%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMS-----------IICIANSETQL---------KNTLWA 126
           G+GKT      ++      P              ++     + Q              +A
Sbjct: 229 GLGKTITTLACIV----GHPPEKEDRDEFSRATLVVVGGPQDAQQWADQTERHCDEKFFA 284

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
           + + +   +P   W   Q    H         +  +      +      +     +    
Sbjct: 285 KTTIYSKKIP---WRAAQWGRRHIELVAQFPNKNVIQALRGQWAGDPVGFERALQENLGQ 341

Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI-----F 241
               +   V  DEA    +  + + L  +   +    WI++        + Y       F
Sbjct: 342 LFKINWYRVVLDEAHSIKNRTSSTTLACWQL-SAKFRWIVSGTPISNTFYPYLRFLGCSF 400

Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301
            + L+ +K   +D     G        ++ R   D       I+        + ++P   
Sbjct: 401 AVNLKKFKSEYMDGGHSNGNFEALVSLVMYRRKQDETFLGRRIVSLPESHSHDLWVPLED 460

Query: 302 IEEAMSR 308
            E AM R
Sbjct: 461 WEMAMMR 467


>gi|14548160|gb|AAA93186.2| DEAD family RNA helicase [uncultured crenarchaeote 4B7]
          Length = 451

 Score = 40.7 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 48/218 (22%), Gaps = 23/218 (10%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
            A  G GKT      ML  I    G+  + IA +          E+ K            
Sbjct: 45  QAHTGTGKTAAFGIPMLQNIIHGGGIQGLVIAPTRELAMQIT-EEIKKVGK--------- 94

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS- 201
              + +        +  Q   +  K   +                   +   V  DEA  
Sbjct: 95  YTKIKVVTVYGGQGIGIQLDALRRKPEIVVATPGRLIDHLDNGSIRTDNIKHVVLDEADV 154

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSN--TRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
                  + I     ++  NR   + S      +        N                +
Sbjct: 155 MLDMGFIEDIEYVLQKIPGNRITSLWSATMPPEILRLSDKYLNNAKN-------ILIDSD 207

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297
            +     +             + + L  F  Q     I
Sbjct: 208 DLSGEGIDQAFLVIKDRE---KHKYLTDFINQNKGQVI 242


>gi|332883475|gb|EGK03758.1| hypothetical protein HMPREF9456_01825 [Dysgonomonas mossii DSM
           22836]
          Length = 1116

 Score = 40.7 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 89/293 (30%), Gaps = 52/293 (17%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE----------VSKW 131
           I    G GKT++ A  ++  +  +   +I+ +A +   +     A             ++
Sbjct: 703 IVGPPGTGKTSIFARQLIERLHAKEDSNILVMAYTNRAVDELCAAICEAFSEDDSVCDRY 762

Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE--ERPDTFVGPHN 189
           + +       E     L  +  Y     + +        I   T +    +P+ F   H 
Sbjct: 763 IRIGSELSCGEAYRHRLLQNISYKATNRKDLLQAIASTRIFVGTLASIMGKPELFDLKHF 822

Query: 190 THGMAVFNDEASGTPDIINKSILG-----------------FFTELNPNRFWIMTSN--- 229
                   DEAS   +     +L                     + + ++      N   
Sbjct: 823 D---VAIIDEASQILESQIIGLLPQFDKFIMIGDHKQLSTITLQDESRSKVDGSILNDIE 879

Query: 230 -TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA----RIEI 284
                   F  +F I  +    +  DT T  G        +++ +  D+ +     R + 
Sbjct: 880 LYDCRESLFERLFRICQKQAWTHAYDTLTYHGRMHQDIARLVNPHFYDNILKIATERQQA 939

Query: 285 LGQFPQQEVNN------------FIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
              +P  + N+            FIP   I++A   +  +D  A + +   IA
Sbjct: 940 DLNYPSFDPNDPYQTMISNKRVCFIPVREIDDASVSDKTNDAEAEIAVSLSIA 992


>gi|326794298|ref|YP_004312118.1| PhoH family protein [Marinomonas mediterranea MMB-1]
 gi|326545062|gb|ADZ90282.1| PhoH family protein [Marinomonas mediterranea MMB-1]
          Length = 466

 Score = 40.7 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 47/144 (32%), Gaps = 13/144 (9%)

Query: 87  GIGKTTLNAWMML-WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
           G GKT L     L   +  +    II   ++    ++  +   ++   M P    F+   
Sbjct: 285 GSGKTLLALAYALQVTMEEKRFNKIIVARSTPPMAEDIGFLPGTEEEKMAPWLAAFDDNL 344

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
             LH +  ++      +   +     +           F+   + +   +  DEA G   
Sbjct: 345 EILHGADEHSFSSIDYVKQKANIQFKSL---------NFMRGRSFNNALIIIDEAQGLTQ 395

Query: 206 IINKSILGFFTELNPNRFWIMTSN 229
              KSI    T +  N   I+  N
Sbjct: 396 FQLKSI---VTRIGSNSKIIVLGN 416


>gi|91228785|ref|ZP_01262694.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 12G01]
 gi|91187660|gb|EAS73983.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 12G01]
          Length = 430

 Score = 40.7 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 29/272 (10%), Positives = 78/272 (28%), Gaps = 38/272 (13%)

Query: 87  GIGKTTLNAWMMLWLIST------RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           G GKT   +  M+  +        R     + +A +          E+++ ++    + +
Sbjct: 48  GTGKTAAFSLPMIQQLLDSNRSASRKTARALILAPT---------RELAEQIADNI-KAY 97

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
            +  +LS+       ++  Q   +++    +       E           H   +  DEA
Sbjct: 98  TKYTNLSVAAIFGGRKMSSQVTALENGVDILVATPGRLEEHIEQGNVSVAHLEFLVFDEA 157

Query: 201 SGTPDIIN--KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
               D+                 +  + ++ T               +  +  + +T   
Sbjct: 158 DRILDMGFIHAVRKIMLDVDTDPQIMMFSATTSSQLNLLAKDILRKPKRIEVERANTTAQ 217

Query: 259 EGIDSGFHEGIISRYGLDSDV-----ARIEILGQFPQQEVNNFI-------------PHN 300
                 +      +  L S++      +  ++    ++  N  +               +
Sbjct: 218 TVAHVLYPVDQERKTELLSELIGRKNWKQVLVFVNYKETANEVVKELKLDGIKAVVCHGD 277

Query: 301 YIEEAMSREAID--DLYAPLIMGCDIAGEGGD 330
             + A  R   +     A +++  D+A  G D
Sbjct: 278 RAQSARRRALEEFKSGKARVMVATDVAARGLD 309


>gi|312127369|ref|YP_003992243.1| hypothetical protein Calhy_1153 [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777388|gb|ADQ06874.1| protein of unknown function DUF815 [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 440

 Score = 40.7 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 73/237 (30%), Gaps = 21/237 (8%)

Query: 1   MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMR-FFPWGIKGKPLEHFSQPHRWQLEFM 59
           + + ++        L E L+       F  F     F W   G+ L         +L+ +
Sbjct: 161 IEKFLNITPWS--SLIEELVEFHRQNGFGIFAKYKGFSW--DGEKLIGIENLDPIRLDSL 216

Query: 60  EAVDVHCHSNVNNSNPT-----IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
             +D      V N+        +    +   RG GK++    ++     +  G+ ++ + 
Sbjct: 217 VNIDRQKKIVVENTLAFLNGQRVNNILLYGSRGTGKSSTVKAILNEF--SHKGLRVVEV- 273

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
             + QL    +  + + L  +P +    +  LS          L+  +    +       
Sbjct: 274 -FKDQLYT--FPRLIRILRDVPLKFIIFVDDLSFEDIEENYTKLKAILEGSLEAMPQNVV 330

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
            Y+      FV    +    + +DE        N ++    +  +     +   +  
Sbjct: 331 IYATSNRRHFVKERFSDRNGLSDDEVHF-----NDTLEEKLSLADRFGIVVTYPSPT 382


>gi|304395575|ref|ZP_07377458.1| helicase domain protein [Pantoea sp. aB]
 gi|304356869|gb|EFM21233.1| helicase domain protein [Pantoea sp. aB]
          Length = 954

 Score = 40.7 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 61/247 (24%), Gaps = 40/247 (16%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
              +  I+   G+GKT     ++  LI    G  I+ +A     +      E        
Sbjct: 122 PRQRILIADAVGLGKTLEAGILVSELIRRGRGKRILVLAVK--SMLTQFQKEF------- 172

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH---NTHG 192
                F +    L  +G            +  HY        +         H   N   
Sbjct: 173 --WSRFAVPLTRLDSAGLQKVRNRIPTNHNPFHYFDKTIISIDTLKQDIEYRHHLENAWW 230

Query: 193 MAVFNDEASGTPDIINKSILGFFTE--LNPNRFWIMTSNTR------------------- 231
             +  DEA    +    S+     +     +   IM S T                    
Sbjct: 231 DIIVIDEAHNVAERGTSSLRSKLAKLLAGRSDTLIMLSATPHDGKAESFASLMNMLDPTA 290

Query: 232 --RLNGWFYDIFNIPLEDWKRYQIDTRT--VEGIDSGFHEG-IISRYGLDSDVARIEILG 286
                 + Y  F       +R++ D +            +         + +V R  +  
Sbjct: 291 IANPKEYEYADFADKNLVVRRFKKDVKDQMAGEFPEREIKELQREATSAEEEVYRRLLES 350

Query: 287 QFPQQEV 293
           +F   + 
Sbjct: 351 KFRDDDD 357


>gi|300742505|ref|ZP_07072526.1| ATPase [Rothia dentocariosa M567]
 gi|300381690|gb|EFJ78252.1| ATPase [Rothia dentocariosa M567]
          Length = 914

 Score = 40.7 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 48/166 (28%), Gaps = 27/166 (16%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL------------WAE 127
            A+    G GKT L + ++  L++   G  +  +A S   ++N L            W  
Sbjct: 500 VAVQGPPGSGKTFLGSQVIARLVA--EGAKVGVVAQSHAVVENMLTACLERNLFPAEWVM 557

Query: 128 VSKWLSMLPHRHWFEMQS---LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
            +K  S LP   W E       +L  +   +   +   G            +    P+  
Sbjct: 558 RAKGKSQLPDYPWVEASDKDLTALLDNSGGSGGEKSGDGTSPGVLFG-GTAWDFANPNR- 615

Query: 185 VGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
                     +  DEA          +          R  ++  + 
Sbjct: 616 --IPEGSLDLLVIDEAGQFS------LANTLAVGRAARNLLLLGDP 653


>gi|261601998|gb|ACX91601.1| protein of unknown function DUF699 ATPase putative [Sulfolobus
           solfataricus 98/2]
          Length = 727

 Score = 40.7 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 38/132 (28%), Gaps = 21/132 (15%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             I+A RG GK+      + +L+S     SII  + +    +   +  + + L  L  ++
Sbjct: 219 LVITAARGRGKSASIGLFLSYLMSEGNFGSIIVTSPTYYSSQEI-FKFIIRGLEALNVKY 277

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                                 +              S  +  +     N  G  +  DE
Sbjct: 278 KV--------------------ITSRDGKIMKISTRDSRVKWVSPDLAKNEEGDLIVIDE 317

Query: 200 ASGTPDIINKSI 211
           A+         I
Sbjct: 318 AAAMGIEFLDYI 329


>gi|15897323|ref|NP_341928.1| hypothetical protein SSO0391 [Sulfolobus solfataricus P2]
 gi|13813538|gb|AAK40718.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
          Length = 743

 Score = 40.7 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 38/132 (28%), Gaps = 21/132 (15%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             I+A RG GK+      + +L+S     SII  + +    +   +  + + L  L  ++
Sbjct: 235 LVITAARGRGKSASIGLFLSYLMSEGNFGSIIVTSPTYYSSQEI-FKFIIRGLEALNVKY 293

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                                 +              S  +  +     N  G  +  DE
Sbjct: 294 KV--------------------ITSRDGKIMKISTRDSRVKWVSPDLAKNEEGDLIVIDE 333

Query: 200 ASGTPDIINKSI 211
           A+         I
Sbjct: 334 AAAMGIEFLDYI 345


>gi|261492366|ref|ZP_05988927.1| putative helicase [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261311970|gb|EEY13112.1| putative helicase [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 762

 Score = 40.7 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 49/179 (27%), Gaps = 14/179 (7%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           +++   G GKT  +    L          II +    + ++    AE  K    L     
Sbjct: 264 SLTVPTGGGKTFTSMAFALEHAKQYGLCRIIYVIPFTSIIEQNA-AEFRKAFGELGTEAV 322

Query: 141 FEMQSLSLHPSGW-YAELLEQSMGIDSKHYTITCRTYS-------EERPDTFVGPHNTHG 192
            E  S   H S    +   +  +  ++    +   T          +R       HN  G
Sbjct: 323 LEHHSTFDHDSLPDKSSRDKLKLASENWDAPVVVTTAVQFFESLFADRSSCCRKLHNIAG 382

Query: 193 MAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTR-RLNGWFYDIFNIPLE 246
             +  DEA   P      I  +I         +      +         FY  F    E
Sbjct: 383 SVIILDEAQMLPLNLLRPIMAAIDELARNYQCSVVLCTATQPAIHQANGFYKGFENVRE 441


>gi|260599032|ref|YP_003211603.1| Terminase, ATPase subunit [Cronobacter turicensis z3032]
 gi|260218209|emb|CBA33092.1| Terminase, ATPase subunit [Cronobacter turicensis z3032]
          Length = 590

 Score = 40.7 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 33/329 (10%), Positives = 72/329 (21%), Gaps = 46/329 (13%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
           F E    +             +  + + R IG T   +   L       G + I ++ S+
Sbjct: 141 FFEESFDYQLRWHRAGLEHRIRDILKS-RQIGATFYFSREALLRALET-GHNQIFLSASK 198

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP-----SGWYAELLEQSMGIDSKH---- 168
           TQ    ++ E   ++     R   E+    +          +      +    +      
Sbjct: 199 TQAY--VFRE---YIIQFARRVDVELSGDPIVIGNNGAKLIFLGTNSNTAQSHNGDLYVD 253

Query: 169 ---YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225
              +    +   +         H       +    S           G            
Sbjct: 254 EIFWIPNFQRLRKVASGMASQKHLRST---YFSTPSTLGHGAFPFWSGELFNKG-RTSAA 309

Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
              +    +             W++       + G    F    + R     D  R   +
Sbjct: 310 ERVDIDISHAALAGGMLCGDGQWRQIVTIEDALAGGCDLFDLDALKRENSAED-FRNLFM 368

Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLY-----------APLIMGCDIAGEGGDKTVV 334
            +F   +  +  P   ++  M     +               P+ +G D +  G   +  
Sbjct: 369 CEFVD-DKASVFPFEELQRCMVDSLEEWEDFSPFAARPFGSRPVWIGYDPSHTGD--SAG 425

Query: 335 VFRRGN--------IIEHIFDWSAKLIQE 355
                          I     W       
Sbjct: 426 CVVLAPPVVSGGKFRILERHQWKGMDFAT 454


>gi|149004108|ref|ZP_01828913.1| prophage LambdaSa2, terminase large subunit, putative
           [Streptococcus pneumoniae SP14-BS69]
 gi|147757920|gb|EDK64929.1| prophage LambdaSa2, terminase large subunit, putative
           [Streptococcus pneumoniae SP14-BS69]
          Length = 570

 Score = 40.7 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 34/275 (12%), Positives = 70/275 (25%), Gaps = 27/275 (9%)

Query: 11  LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70
            E+  +   +  +  L+    V     WG         + P       +E         +
Sbjct: 54  EEECSNTKGLAGKLRLALPQKVWLETTWGFYHTVEVTKTDPDT-----LEEYKDFEERRL 108

Query: 71  NNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK 130
            +  P      I   RG GKTTL + +            +  I + E      L A   +
Sbjct: 109 IHEVP------IIVPRGTGKTTLGSAI----------GEVGQIIDGEWGADIQLLAYSRE 152

Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
               L +     + +            + +S          T  +    +   +     T
Sbjct: 153 QAGYLFNASRAMLSNEESLLHYMREADILRSTK--QGILYETTNSLMSIKTSDYEILDGT 210

Query: 191 HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250
           +      DE     D   K +          + WI    +         +F+     W  
Sbjct: 211 NAHYNIFDEVHTYDDDFIKVVNDG--SSRKRKNWITWYISTNGTKR-DKLFDKYYNIWVD 267

Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
             +D + V      +   +     + +     + +
Sbjct: 268 I-LDEKIVNDSVMPWIYQLDDVSEIHNPDMWQKAM 301


>gi|239827745|ref|YP_002950369.1| DEAD/DEAH box helicase [Geobacillus sp. WCH70]
 gi|239808038|gb|ACS25103.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. WCH70]
          Length = 435

 Score = 40.7 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 23/220 (10%), Positives = 54/220 (24%), Gaps = 23/220 (10%)

Query: 31  FVMRFF-PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIG 89
           F    F P+ I+      F +P   Q   + ++                     +  G G
Sbjct: 6   FERFSFQPFIIEAIKELRFYKPTEIQERIIPSILRGES------------VIGQSQTGTG 53

Query: 90  KTTLNAWMMLWLIS-TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
           KT      ++  I      +  +  A +        + E+ K +   P            
Sbjct: 54  KTHAYLLPIIEKIDPDHEAVQAVITAPTRELATQI-YHEILKIIKFCPSDRQITA----- 107

Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208
                  +  +    + ++ + +                +      +  DEA    D+  
Sbjct: 108 RCFIGGTDKQKAIEKLKTQPHIVVGTPGRINDLIREQALNVWTATTLVVDEADLMLDMGF 167

Query: 209 KSILGFFTELNPNRFWIMTSN---TRRLNGWFYDIFNIPL 245
              +       P    ++  +     +L  +       P 
Sbjct: 168 IVDVDQIAARMPKELQMLVFSATIPEKLKPFLKKYMENPK 207


>gi|317491008|ref|ZP_07949444.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920555|gb|EFV41878.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 442

 Score = 40.7 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 24/209 (11%), Positives = 52/209 (24%), Gaps = 20/209 (9%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
           SA  G GKT      +L  +   P        ++ +  +         AE +  L+   +
Sbjct: 47  SAPTGTGKTVAYLLPVLQHLLDFPRKKSGPPRVLVLTPTRELAMQV--AEQAIELAKHTN 104

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
                +     + +        Q +        +   T    +              +  
Sbjct: 105 LDIATITGGVAYMNHAEVFSENQDI--------VVATTGRLLQYIKEENFDCRAVETLIL 156

Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257
           DEA    D+     +         R   M  +         +     L+D    +     
Sbjct: 157 DEADRMLDMGFAQDIETIAAETRWRKQTMLFSATLEGDAIKEFSERLLQDPVEIE---AD 213

Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILG 286
               +    +     Y  D+   + ++L 
Sbjct: 214 PSRRERKKIQQW--YYRADTLEHKTKLLC 240


>gi|302388667|ref|YP_003824488.1| CRISPR-associated HD domain protein [Thermosediminibacter oceani
           DSM 16646]
 gi|302199295|gb|ADL06865.1| CRISPR-associated HD domain protein [Thermosediminibacter oceani
           DSM 16646]
          Length = 811

 Score = 40.7 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 20/183 (10%), Positives = 45/183 (24%), Gaps = 8/183 (4%)

Query: 72  NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL--WAEVS 129
            + P     ++    G+GKT     + L  +++     +I +A   + L        E +
Sbjct: 282 RTFPDRLIYSLELATGLGKTLTALRIALEAVASGKCSRVIYVAPYISILSQATNVIREAT 341

Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV---G 186
               ++ H H   +     H                    T   + +    P        
Sbjct: 342 GISDIIEHHHLSFLDIDYEHLRSEEDGAFLIDSWQSKIVTTTFNQFFLALFPTKAQHTVR 401

Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF---WIMTSNTRRLNGWFYDIFNI 243
               +   V  DE          + L               + T+     + +  + +  
Sbjct: 402 IQALNNAFVIIDEPQIIEPKAWAAFLKTLEAAAKRLHFQSILCTATLPHASDYLNEEYMC 461

Query: 244 PLE 246
              
Sbjct: 462 LSR 464


>gi|296475200|gb|DAA17315.1| Fanconi anemia, complementation group M [Bos taurus]
          Length = 348

 Score = 40.7 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 13/125 (10%), Positives = 33/125 (26%), Gaps = 11/125 (8%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
               +    G+GKT + A +M       P   ++ +A ++  +      ++     ++  
Sbjct: 111 CNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQ----QIEACYRVMGI 166

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
                 +      +    E+      +      +         P             +  
Sbjct: 167 PQSHMAEMTGSTQAFTRKEIWSSKRVLFLTPQVMVNDLSRGACP-------AAEIKCLVI 219

Query: 198 DEASG 202
           DEA  
Sbjct: 220 DEAHK 224


>gi|198469293|ref|XP_001354982.2| GA15175 [Drosophila pseudoobscura pseudoobscura]
 gi|198146802|gb|EAL32038.2| GA15175 [Drosophila pseudoobscura pseudoobscura]
          Length = 1009

 Score = 40.7 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 58/207 (28%), Gaps = 22/207 (10%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            +++A RG GK+     + +        +++   +     L   L+  V K    L ++ 
Sbjct: 275 MSLTAARGRGKSAAL-GLSIAAAVAFGYVNVYVTSPHPENLIT-LFEFVLKGFDALEYQE 332

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +   +    + +   ++  ++   S+              +            +  DE
Sbjct: 333 HADYTIIRSTNADYKKAIIRINITRSSRQTIQYIAPSDTHLLNAAD--------LLLIDE 384

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
           A+  P       L    ++       M S         Y+     L      Q+      
Sbjct: 385 AAAIP-------LPLVKKMIGPYLVFMASTING-----YEGTGRSLSLKLISQLQKENNA 432

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILG 286
                  E I  +   D +   I +L 
Sbjct: 433 RPPLKLDESIRYQENDDIERWLINLLC 459


>gi|195163221|ref|XP_002022450.1| GL13038 [Drosophila persimilis]
 gi|194104442|gb|EDW26485.1| GL13038 [Drosophila persimilis]
          Length = 691

 Score = 40.7 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 58/207 (28%), Gaps = 22/207 (10%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            +++A RG GK+     + +        +++   +     L   L+  V K    L ++ 
Sbjct: 252 MSLTAARGRGKSAAL-GLSIAAAVAFGYVNVYVTSPHPENLIT-LFEFVLKGFDALEYQE 309

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +   +    + +   ++  ++   S+              +            +  DE
Sbjct: 310 HADYTIIRSTNADYKKAIIRINITRSSRQTIQYIAPSDTHLLNAAD--------LLLIDE 361

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
           A+  P       L    ++       M S         Y+     L      Q+      
Sbjct: 362 AAAIP-------LPLVKKMIGPYLVFMASTING-----YEGTGRSLSLKLISQLQKENNA 409

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILG 286
                  E I  +   D +   I +L 
Sbjct: 410 RPPLKLDESIRYQENDDIERWLINLLC 436


>gi|182418672|ref|ZP_02949948.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521]
 gi|237669697|ref|ZP_04529674.1| cold-shock deAd box protein a [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182377449|gb|EDT75004.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521]
 gi|237654771|gb|EEP52334.1| cold-shock deAd box protein a [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 524

 Score = 40.7 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 20/183 (10%), Positives = 47/183 (25%), Gaps = 12/183 (6%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKT   +  +L  +ST  G+  + +A +          E+++           + +  
Sbjct: 51  GTGKTAAYSLPILTKMSTNKGIKALILAPTRELAVQV-KDEMNR---------LSKYEKA 100

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPD 205
            +        +  Q   +      +                H      +  DEA      
Sbjct: 101 EILAVYGGDSIDRQIRALRKGVDVVVGTPGRMLDLIKRKCLHLDSVEFLVLDEADEMLNM 160

Query: 206 IINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264
                I    +      +  + ++            +  P       +  + TV  I+  
Sbjct: 161 GFIDDIESILSHTPEERQTLLFSATMPDPIAKLAKRYMKPDAKLVSVKKSSLTVSKIEQS 220

Query: 265 FHE 267
           +  
Sbjct: 221 YFM 223


>gi|151553733|gb|AAI49287.1| FANCM protein [Bos taurus]
          Length = 373

 Score = 40.7 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 13/125 (10%), Positives = 33/125 (26%), Gaps = 11/125 (8%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
               +    G+GKT + A +M       P   ++ +A ++  +      ++     ++  
Sbjct: 111 CNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQ----QIEACYRVMGI 166

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
                 +      +    E+      +      +         P             +  
Sbjct: 167 PQSHMAEMTGSTQAFTRKEIWSSKRVLFLTPQVMVNDLSRGACP-------AAEIKCLVI 219

Query: 198 DEASG 202
           DEA  
Sbjct: 220 DEAHK 224


>gi|221134097|ref|ZP_03560402.1| DNA helicase II [Glaciecola sp. HTCC2999]
          Length = 722

 Score = 40.7 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 86/295 (29%), Gaps = 29/295 (9%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
             ++ ++      V      +    I AG G GKT +    + WL+          +A +
Sbjct: 5   RLLDGLNDKQRQAVAAPAQDM---LILAGAGSGKTRVLVHRIAWLMEVENLSPFSILAVT 61

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
            T   N    E+   +  L  +         +    ++           ++       T 
Sbjct: 62  FT---NKAAREMRGRIEQLKGQSLHH-----MWIGTFHGLAHRLLRAHYAEANLPENFTI 113

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
            +      +       M +  DE    P   ++  +    +             + ++ +
Sbjct: 114 LDSDDQHRLIKRIIKSMNL--DE-KDWPAKQSQWYINGNKDEGLR--------PKDIDTY 162

Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
                    + ++ YQ        ID             D+D  R     +F    V+ F
Sbjct: 163 GDANQQKMRDIYQAYQQTCDRSGLIDFAELLLRAYELWRDNDRIRQHYQERFRAVLVDEF 222

Query: 297 IPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
              N I+ A  R         +I+G D      D++ +   RG  +E+I  +   
Sbjct: 223 QDTNNIQYAWLRLLSAPSNNMMIVGDD------DQS-IYGWRGANVENISHFLKD 270


>gi|313632875|gb|EFR99821.1| helicase domain-containing protein [Listeria seeligeri FSL N1-067]
          Length = 444

 Score = 40.7 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 35/152 (23%), Gaps = 11/152 (7%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +WQ    E         +             +  G GKT   A   L  I   P +  +
Sbjct: 12  EKWQEHGYETPTE-IQRAMYQPIKDGADVLAVSPTGTGKTVAYALPTLEKIEATPHIQWL 70

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +A S   +                 R W   + L++      A +  Q   +  K   I
Sbjct: 71  ILAPSHELVMQITE----------VIRSWLPSEDLTVISLIGGANVKRQIEKLKKKPQII 120

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
                                  +  DE    
Sbjct: 121 VASPGRALELIKQKKIKMHEIKTITLDECDQL 152


>gi|289435058|ref|YP_003464930.1| helicase domain protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171302|emb|CBH27844.1| helicase domain protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 444

 Score = 40.7 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 35/152 (23%), Gaps = 11/152 (7%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +WQ    E         +             +  G GKT   A   L  I   P +  +
Sbjct: 12  EKWQEHGYETPTE-IQRAMYQPIKDGADVLAVSPTGTGKTVAYALPTLEKIEATPHIQWL 70

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +A S   +                 R W   + L++      A +  Q   +  K   I
Sbjct: 71  ILAPSHELVMQITE----------VIRSWLPSEDLTVISLIGGANVKRQIEKLKKKPQII 120

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
                                  +  DE    
Sbjct: 121 VASPGRALELIKQKKIKMHEIKTITLDECDQL 152


>gi|291531275|emb|CBK96860.1| DNA or RNA helicases of superfamily II [Eubacterium siraeum 70/3]
          Length = 1048

 Score = 40.7 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 57/187 (30%), Gaps = 30/187 (16%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGM 108
           P+ +Q E ++ +      +         +  I A  G GKT ++A               
Sbjct: 317 PYSYQQEILDKL------DAERKVRGYNRNLIVAATGTGKTVISALDYKRFCRQNSDKPC 370

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            ++ +A+ E  LK ++                      ++     + E+   +   +S  
Sbjct: 371 RLLFVAHREEILKQSM------------------YTFRAVLKDANFGEMFVGNYKPESID 412

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
                      +  T     + +   +  DE         + +    +  NP+    +T+
Sbjct: 413 NLFISIQTFNSQSFTDKTSPDFY-DYIIVDEFHHAAAPTYQKL---LSYYNPHILLGLTA 468

Query: 229 NTRRLNG 235
              R++G
Sbjct: 469 TPERMDG 475


>gi|15922227|ref|NP_377896.1| hypothetical protein ST1912 [Sulfolobus tokodaii str. 7]
 gi|15623016|dbj|BAB67005.1| 725aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 725

 Score = 40.7 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 20/163 (12%), Positives = 44/163 (26%), Gaps = 26/163 (15%)

Query: 80  CAISAGRGIGKTTLNAWMM--LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
            A++A RG GK+ +    +  +  +  R    II  + S        +  ++K L  L  
Sbjct: 219 LAVTAPRGRGKSAVIGLFLSYVVFLKYREPTVIIITSPSYYSSSEI-FRFLAKGLKSLGI 277

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
           ++                E++ + +                          +  G  +  
Sbjct: 278 KYTVTKSRDGKIMRISAGEVIVRWL--------------------APDLAKDYDGYLIVV 317

Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
           DEA+       +++     + N                 F   
Sbjct: 318 DEAAALG---IETLEYIIRKWNKTILITTIHGYEGSGKAFLKY 357


>gi|307249531|ref|ZP_07531518.1| RNA polymerase-associated protein rapA [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306858386|gb|EFM90455.1| RNA polymerase-associated protein rapA [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 969

 Score = 40.7 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 27/261 (10%), Positives = 65/261 (24%), Gaps = 19/261 (7%)

Query: 33  MRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTI-FKCAISAGRGIGKT 91
                +         F  P R       ++  H           +  +  ++   G+GKT
Sbjct: 123 RFALRYRALQHQQAQFQSPLRGMRGIRASLIPHQLHIAKEVGQRVAPRVLLADEVGLGKT 182

Query: 92  TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151
                ++   + +     ++ +     Q +   W  V            F+ +  +    
Sbjct: 183 IEAGMILQQQLFSGRVERVLVLVPESLQHQ---W-LVEMLRRFNLKFSLFDEERCADFDK 238

Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211
                        DS+   I    + E  P+       ++   +  DEA           
Sbjct: 239 ADEDGNDVSENPFDSEALVIASIDWLESSPNRAKQVLASNWDMLIVDEAHHL---EWSEN 295

Query: 212 LGFF-------TELNPNRFWIMTSNTR--RLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
                               ++T+          F  +  +  + +  Y  ++   E  D
Sbjct: 296 EPSVGYQFVERLSKQTPAVLLLTATPEQLGQESHFARLALLDADRF--YDYNSFVAEQKD 353

Query: 263 SGFHEGIISRYGLDSDVARIE 283
                  ++    D  ++  E
Sbjct: 354 YKPVADAVATLLNDKPLSNEE 374


>gi|293356793|ref|XP_241671.5| PREDICTED: DNA replication helicase 2 homolog [Rattus norvegicus]
          Length = 1060

 Score = 40.7 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 34/297 (11%), Positives = 72/297 (24%), Gaps = 18/297 (6%)

Query: 28  FKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRG 87
           F  ++    P   K          ++ Q + M+ V               +   +    G
Sbjct: 603 FIAYLSSVLPHDAKDTVANILKGLNKPQRQAMKKV----------LLSKDYTLIVGMP-G 651

Query: 88  IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS--MLPHRHWFEMQS 145
            GKTT    ++  L +   G S++  + + + + N L       +    L   H      
Sbjct: 652 TGKTTTICALVRILSAC--GFSVLLTSYTHSAVDNILLKLAKFKIGFLRLGQSHKVHPDI 709

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
                          S+    + Y       +     +              DEAS    
Sbjct: 710 QKFTEEEMCRLRSIASLAHLEELYNSHPVVATTCMGISHPMFSRKTFDFCIVDEASQISQ 769

Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265
            I   +   F                 +         +    +KR + +   V  +   +
Sbjct: 770 PI--CLGPLFFSRRFVLVGDHKQLPPLVLNREARALGMSESLFKRLERNESAVVQLTIQY 827

Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGC 322
                     +      ++      +  N  I    +++       D    P + G 
Sbjct: 828 RMNRKIMSLSNKLTYEGKLECG-SDRVANAVITLPNLKDVRLEFYADYSDNPWLAGV 883


>gi|293344978|ref|XP_002725876.1| PREDICTED: DNA replication helicase 2 homolog (yeast) [Rattus
           norvegicus]
          Length = 1060

 Score = 40.7 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 34/297 (11%), Positives = 72/297 (24%), Gaps = 18/297 (6%)

Query: 28  FKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRG 87
           F  ++    P   K          ++ Q + M+ V               +   +    G
Sbjct: 603 FIAYLSSVLPHDAKDTVANILKGLNKPQRQAMKKV----------LLSKDYTLIVGMP-G 651

Query: 88  IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS--MLPHRHWFEMQS 145
            GKTT    ++  L +   G S++  + + + + N L       +    L   H      
Sbjct: 652 TGKTTTICALVRILSAC--GFSVLLTSYTHSAVDNILLKLAKFKIGFLRLGQSHKVHPDI 709

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
                          S+    + Y       +     +              DEAS    
Sbjct: 710 QKFTEEEMCRLRSIASLAHLEELYNSHPVVATTCMGISHPMFSRKTFDFCIVDEASQISQ 769

Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265
            I   +   F                 +         +    +KR + +   V  +   +
Sbjct: 770 PI--CLGPLFFSRRFVLVGDHKQLPPLVLNREARALGMSESLFKRLERNESAVVQLTIQY 827

Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGC 322
                     +      ++      +  N  I    +++       D    P + G 
Sbjct: 828 RMNRKIMSLSNKLTYEGKLECG-SDRVANAVITLPNLKDVRLEFYADYSDNPWLAGV 883


>gi|229551666|ref|ZP_04440391.1| possible bacteriophage terminase large subunit [Lactobacillus
           rhamnosus LMS2-1]
 gi|229314984|gb|EEN80957.1| possible bacteriophage terminase large subunit [Lactobacillus
           rhamnosus LMS2-1]
          Length = 563

 Score = 40.7 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 35/292 (11%), Positives = 74/292 (25%), Gaps = 53/292 (18%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPG---MSIICIANSETQLKNTLWAEVSKWLSMLP 136
             IS  R  GK+ L + ++L+             +  A ++ +    ++  V   L  L 
Sbjct: 93  VFISMARKNGKSLLISGVILYEFLFGKNPANKRQLYTAANDRKQAGIVFGMVKDRLRAL- 151

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
                                    +  D         T      DT             
Sbjct: 152 -------------MRKDPGIKRMVKITRDELVNLDDGSTIRSFSRDTG-LVDGYEPHVAV 197

Query: 197 NDEAS--GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL--------- 245
            DE +   T D+I     G     +   F I T+        F   +             
Sbjct: 198 VDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPMFQQNYPYAKKVLSGEETA 257

Query: 246 EDWKRYQIDTRTVEGIDSG--FHEGI---------------------ISRYGLDSDVARI 282
           E +  +  +   V+ +D    + +                        +      +   +
Sbjct: 258 ERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDIVHDQITDYLTTKLSQAHADGSLNAKLV 317

Query: 283 EILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334
           +    + Q   ++++  +  ++A   E  D       +G D+     D   +
Sbjct: 318 KNFNIWRQATEDSYLDFDAWKDAELSEKPDIRGKRAWIGIDVGRT-SDLFAI 368


>gi|254284073|ref|ZP_04959041.1| RNA helicase DbpA [gamma proteobacterium NOR51-B]
 gi|219680276|gb|EED36625.1| RNA helicase DbpA [gamma proteobacterium NOR51-B]
          Length = 474

 Score = 40.7 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 55/200 (27%), Gaps = 17/200 (8%)

Query: 55  QLEFMEAVD----VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS-TRPGMS 109
           QL+ ++A+         +       +     + A  G GKT   A  +L  I+    G+ 
Sbjct: 28  QLDALDALGYKAMTPVQAQSLPLILSGRDVIVRAKTGSGKTAAFALGLLATINPRFFGVQ 87

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
              +  +  +L + +  E+ +  S +P+                   L  Q   +    +
Sbjct: 88  AFVMCPT-RELADQVGKEIRRLASRMPNIKLV--------LLCGGVPLGPQRDSLSHGAH 138

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE---LNPNRFWIM 226
            +       E        +      +  DEA    D+     +         +       
Sbjct: 139 IVVGTPGRIEDHLKRGSLNIESVKTLVLDEADRMLDMGFADAIKQIISGMPGDRQTLLFS 198

Query: 227 TSNTRRLNGWFYDIFNIPLE 246
            +  + +      I   P  
Sbjct: 199 ATYPQDIQRISRSIQRNPAS 218


>gi|149043918|gb|EDL97369.1| rCG60675 [Rattus norvegicus]
          Length = 991

 Score = 40.7 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 34/297 (11%), Positives = 72/297 (24%), Gaps = 18/297 (6%)

Query: 28  FKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRG 87
           F  ++    P   K          ++ Q + M+ V               +   +    G
Sbjct: 538 FIAYLSSVLPHDAKDTVANILKGLNKPQRQAMKKV----------LLSKDYTLIVGMP-G 586

Query: 88  IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS--MLPHRHWFEMQS 145
            GKTT    ++  L +   G S++  + + + + N L       +    L   H      
Sbjct: 587 TGKTTTICALVRILSAC--GFSVLLTSYTHSAVDNILLKLAKFKIGFLRLGQSHKVHPDI 644

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
                          S+    + Y       +     +              DEAS    
Sbjct: 645 QKFTEEEMCRLRSIASLAHLEELYNSHPVVATTCMGISHPMFSRKTFDFCIVDEASQISQ 704

Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265
            I   +   F                 +         +    +KR + +   V  +   +
Sbjct: 705 PI--CLGPLFFSRRFVLVGDHKQLPPLVLNREARALGMSESLFKRLERNESAVVQLTIQY 762

Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGC 322
                     +      ++      +  N  I    +++       D    P + G 
Sbjct: 763 RMNRKIMSLSNKLTYEGKLECG-SDRVANAVITLPNLKDVRLEFYADYSDNPWLAGV 818


>gi|317126196|ref|YP_004100308.1| TrwC relaxase [Intrasporangium calvum DSM 43043]
 gi|315590284|gb|ADU49581.1| TrwC relaxase [Intrasporangium calvum DSM 43043]
          Length = 1096

 Score = 40.7 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 59/244 (24%), Gaps = 20/244 (8%)

Query: 87  GIGKTTLNAWM-MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
           G GK+T  A +  +W     PG  +    ++           +    +         +  
Sbjct: 544 GTGKSTTMAGVRAVWEAKFGPGSVVGLAPSAAAAEVLADAVGMPTENTAKWLTEHARLPE 603

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
                    A L   S  + ++      R                 G  V  DEAS    
Sbjct: 604 RQARLERLRARLDRASPSLRTRALEREARRT----AHEIDRWRLRPGQLVIIDEASMVGT 659

Query: 206 IINKSILGFFTELNPNRF----WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI 261
           +    I    +           W   S      G  + +     +D  +       V   
Sbjct: 660 LELDQITTSASAAAAKVLLVGDWAQLS--PVQAGGAFKLLATDRDDVPQLH----DVRRF 713

Query: 262 DSGFHEGI--ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319
              +        R G  +     E  G+    + +     + +  A   +        L+
Sbjct: 714 RHEWERDASLKLRTGRPTAADDYEKHGRVIGGDRDTV--LDALFTAWQTDIT-AGRTSLM 770

Query: 320 MGCD 323
           +  D
Sbjct: 771 IAAD 774


>gi|295399200|ref|ZP_06809182.1| DEAD/DEAH box helicase domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312110198|ref|YP_003988514.1| DEAD/DEAH box helicase [Geobacillus sp. Y4.1MC1]
 gi|294978666|gb|EFG54262.1| DEAD/DEAH box helicase domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311215299|gb|ADP73903.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y4.1MC1]
          Length = 435

 Score = 40.7 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 55/223 (24%), Gaps = 29/223 (13%)

Query: 31  FVMRFF-PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI-SAGRGI 88
           F    F P+ I+      F +P   Q   +                   K AI  +  G 
Sbjct: 6   FERFSFQPFIIEAIKELRFYKPTEIQERII-------------PIALRGKSAIGQSQTGT 52

Query: 89  GKTTLNAWMMLWLISTRPGMS---IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
           GKT   A+++  +    P       +  A +        + E+ K     P         
Sbjct: 53  GKTH--AYLLPIIEKIDPDRKAVQAVITAPTRELATQI-YHEILKITKFCPSDRQITA-- 107

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
                     +  +    + ++ + +                       +  DEA    D
Sbjct: 108 ---RCFIGGTDKQKAIEKLKTQPHIVVGTPGRINDLIREQALLVRTANTLVVDEADLMLD 164

Query: 206 IINKSILGFFTELNPNRFWIMTSN---TRRLNGWFYDIFNIPL 245
           +     +       P    ++  +     +L  +       P 
Sbjct: 165 MGFIVDVDQIAARMPKELQMLVFSATIPEKLKPFLKKYMENPE 207


>gi|195495021|ref|XP_002095090.1| GE22191 [Drosophila yakuba]
 gi|194181191|gb|EDW94802.1| GE22191 [Drosophila yakuba]
          Length = 681

 Score = 40.7 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 39/153 (25%), Gaps = 4/153 (2%)

Query: 60  EAVDVHCHSNVNNSNPTIFK-CAISAGRGIGKTTLNAWMMLWLISTRPGMSI--ICIANS 116
           + V            P   +   +SA  G GKT   A  ++ L+S R    +  + +   
Sbjct: 165 KQVIPWILEAQAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVECKVRALIVLPV 224

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
                   +  VS   S          +   L           +          +T    
Sbjct: 225 AELALQV-YRVVSALCSKTELEVCLLSKQHKLEDEQEKLVEQYKGKYYSKADIVVTTPGR 283

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209
             E      G        +  DEA    D + +
Sbjct: 284 LVEHLHATKGFCLKSLTFLVIDEADRIMDAVFQ 316


>gi|322493294|emb|CBZ28579.1| putative mitochondrial DEAD box protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 544

 Score = 40.7 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 46/177 (25%), Gaps = 20/177 (11%)

Query: 43  KPLEHFSQPH---RWQLEFMEAV----DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95
            PL  F +     RW  E ++ +                         A  G GKT   A
Sbjct: 89  TPLNSFEELRDAPRWLAEGLKTLKYPSTTDIQKFTIPLLADGHDVIGLAPTGSGKTVAFA 148

Query: 96  WMMLWLISTRPGMS--IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
              L      P  +  ++ +A +   ++ T      K    L        ++        
Sbjct: 149 VPALAGFKPNPDGTPSVLVLAPTRELVQQTT-----KVFQNLGCGQVRVCEA------YG 197

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS 210
            A    Q+  + +    +       +           +   +  DEA    D+  + 
Sbjct: 198 GASRDLQARRLRNGCDALVACPGRLKDFLDGGDVSIRNLSFLVFDEADRLLDMGFQV 254


>gi|269104692|ref|ZP_06157388.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268161332|gb|EEZ39829.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 430

 Score = 40.7 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 18/185 (9%), Positives = 50/185 (27%), Gaps = 20/185 (10%)

Query: 57  EFMEAV-DVHCHSNVNNSNPTIFK---CAISAGRGIGKTTLNAWMMLWLISTRP------ 106
           + +  +           + P + +      +A  G GKT   +  ++  +   P      
Sbjct: 14  KALTEIGYEKLTPIQKQAIPQLRRGHDVLANAQTGTGKTAAFSLPIIQKMLDNPQPRSRM 73

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
            +  + +A +   ++                + +     L+        ++  Q   ++S
Sbjct: 74  NVRALILAPTRELVEQI----------ANNIKDYTRYTDLTTVAVFGGRKIATQEKKLES 123

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
               +                  ++   +  DEA    D+   S +        +   IM
Sbjct: 124 GCDILVATPGRLLEHLELQNVLLSNIEFLVFDEADRMLDMGFISAIRTILSNVNSTPQIM 183

Query: 227 TSNTR 231
             +  
Sbjct: 184 LFSAT 188


>gi|156838354|ref|XP_001642884.1| hypothetical protein Kpol_1007p10 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113461|gb|EDO15026.1| hypothetical protein Kpol_1007p10 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 605

 Score = 40.7 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 51/173 (29%), Gaps = 21/173 (12%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR- 105
           +F  P   Q     ++   C  N +++N  +      A  G GKT      +L  +    
Sbjct: 202 NFISPSPIQR---ISIPNICQKNGHSTNRDLMGI---ASTGSGKTLAFVIPILIKLLGTA 255

Query: 106 ---------PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
                     G   + +A +    +    AE+ K LS+  +    E+  ++         
Sbjct: 256 IRPLSLKVIEGPKALILAPTRELAQQI-QAEIKKILSLSSN----ELTKITSICIVGGHS 310

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209
           + E S  +      +                   +   +  DEA    D   +
Sbjct: 311 IEEISYDLSKGCDILVATPGRLIDCLESHLIVIDNVNTIVLDEADKMIDFGFE 363


>gi|313813466|gb|EFS51180.1| protein, SNF2 family [Propionibacterium acnes HL025PA1]
          Length = 458

 Score = 40.7 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 56/192 (29%), Gaps = 28/192 (14%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG--M 108
           PH +Q      +  H  +            AI  G G+GK+ +     +W +        
Sbjct: 5   PHNYQQTATRFILDHHEA------------AILLGMGLGKSVIT-LTAIWQLLLDYFTVS 51

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            ++ +A      ++T  A+V+KW  +        + + +          +   +  ++  
Sbjct: 52  RVLVVAP-LRVARDTWPAQVAKWDHLQGLSVAVAVGTKADRLDALAKSAMVTVINRENIP 110

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
           + +     S                 V  DE S   +   K            + W+  +
Sbjct: 111 WLVRQYGDS------------WPFDMVVIDELSSFKNHRAKRFTALVKMRPHVKRWVGLT 158

Query: 229 NTRRLNGWFYDI 240
            T   NG     
Sbjct: 159 GTPASNGLMDIW 170


>gi|295114516|emb|CBL33153.1| Uncharacterized protein conserved in bacteria [Enterococcus sp.
           7L76]
          Length = 906

 Score = 40.7 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 46/161 (28%), Gaps = 16/161 (9%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q E +            +    +F  A     G GKT L A ++L+L       + +
Sbjct: 49  RYYQDEAIRNYHYTQTRIKPSPQHVLFNMA----TGSGKTDLMAGLILYLYQEYDYKNFL 104

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
              N+ +     L       ++    ++ F+ +           E+             I
Sbjct: 105 FTVNTNS----VLMKTKDNLVNQNSDKYLFQDKIEIDGKQISVVEVERFPRVQQDNTIYI 160

Query: 172 TCRTYSEERPDTFVGPHN--------THGMAVFNDEASGTP 204
              +  +   D  V   N         H + +  DEA    
Sbjct: 161 KLSSVQKVSDDLCVVKENTMGLADYERHPVVILADEAHHYS 201


>gi|194303202|ref|YP_002014616.1| gp5 [Mycobacterium phage Phaedrus]
 gi|194150934|gb|ACF33969.1| gp5 [Mycobacterium phage Phaedrus]
          Length = 586

 Score = 40.7 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 41/351 (11%), Positives = 76/351 (21%), Gaps = 48/351 (13%)

Query: 43  KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102
             L     P       +  +       +           ++     GK+T+ A       
Sbjct: 79  AELATAVDPEFVITPALRIISDAIEDVLRYP---RCNLLVTMPPQEGKSTMCAVWTPIRA 135

Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
                   I +A     L +         +          +  L++          +   
Sbjct: 136 LQLNPNRRIILATYGDSLADQHSTTARDLIMRYGTGVTDALTGLAVEDKLGLKINPK--- 192

Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND-------EASGT--PDIINKSILG 213
                 + I                          D       EA      + +N+    
Sbjct: 193 QAKVSSWRIDGAIGGMVAAGLGSAITGKSADLFIIDDPFKNMIEADSARHREKVNEWFAS 252

Query: 214 FFTEL-NPNRFWIMTSNTRRLNGWFYDIFNIPL-EDWKRYQIDTRTVEGIDSGFHEGIIS 271
             +   +P    I+             I       D +        V  +        + 
Sbjct: 253 VASTRLSPEASMILIQTRWHPEDLSGTIIAGEKLLDAEDRTWRHINVPAVSEDGIPDALG 312

Query: 272 RYGLDSDV--ARIEILGQF-------------------PQQEVNNFIPHNYIEEAMSREA 310
           R      +  AR   L +F                   P+          + E    R  
Sbjct: 313 RPEPGIPMISARGRTLREFNQTRKSVGERVWYALYQGSPRNPAGGLFMRAWFEPMAER-- 370

Query: 311 IDDLYAPLIMGCDIAGEG-GDKTVVV----FRRGNIIEHIFDWSAKLIQET 356
             +     I+  D A  G GD+T ++     R G I+    DWS      +
Sbjct: 371 SPERPLATIVAIDPADSGEGDETGIIGGMLDRDGTIVLT-DDWS--DQMTS 418


>gi|194208328|ref|XP_001497607.2| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like [Equus
           caballus]
          Length = 1656

 Score = 40.7 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 34/99 (34%), Gaps = 12/99 (12%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P  WQ E ++ VD +  +             I A    GKT  + + M  ++       +
Sbjct: 761 PDTWQREVLDVVDNNESA------------VIVAPTSSGKTYASYYCMEKVLKESDEGVV 808

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLH 149
           + +A ++  +        ++++  LP            +
Sbjct: 809 VYVAPTKVLVGQVAATVQNRFIKKLPPGSALCGTFTRDY 847


>gi|187940200|gb|ACD39328.1| ATP-dependent DNA helicase [Pseudomonas aeruginosa]
          Length = 1708

 Score = 40.7 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 39/347 (11%), Positives = 81/347 (23%), Gaps = 52/347 (14%)

Query: 12   EQELHEMLMHAECVLSFKN-FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHC---H 67
            E+    + +        K+ F+ R+F    +   L           E   A+  +     
Sbjct: 1049 EEMAAALRLVMHYFNDPKDEFIERYFAGREEVLKLATS-------EESWRAIVENLSVAQ 1101

Query: 68   SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLW 125
              +   N    +  + AG G GKT +    + +L+  R  P   I+ +  +         
Sbjct: 1102 RVIVEDNEDQNRL-VLAGPGSGKTRVIVHRIAYLLRVRRVPARCIVALTFNRHAANEIKQ 1160

Query: 126  AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR--TYSEERPDT 183
              +    +     +      +++  +G   E  E                    + + + 
Sbjct: 1161 RLLRLVGADAYGVNVMTYHRMAMRLTGTRFERGETVEEGRLSLVLSDAVELLEGKRQVEG 1220

Query: 184  FVGPH---NTHGMAVFNDEASGTPDIINKSILGFF---TELNPNRFWIMTSNTRRLN--- 234
                          +  DE     D+  + I        E       +   +  +     
Sbjct: 1221 EDDLREQLLRGYRYILVDEYQDIDDVQYRLISALAGRKAEEEGRLCILAVGDDDQNIYAW 1280

Query: 235  -GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293
                        ED+                  E        +       +  Q P +  
Sbjct: 1281 RDTSNRFIEQFREDYSASSSYLVDNYRSSRNIIEAANQVIERNP----HRLKSQHPIK-- 1334

Query: 294  NNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEG--------GDKT 332
               I     E        +          D A  G        GD++
Sbjct: 1335 ---IDVKRTESPRGGLWEEK---------DPARRGQVLRLLIAGDES 1369


>gi|3703076|gb|AAC63033.1| putative terminase large subunit [Lactococcus phage P008]
          Length = 540

 Score = 40.7 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 65/209 (31%), Gaps = 22/209 (10%)

Query: 85  GRGIGKTTLNA-WMMLWLIS-TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
           GRG GK++L A  ++ W+I   + G   + IA   TQ ++                    
Sbjct: 101 GRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVF---------------DQV 145

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
                   +       +            + +T  +++ D  +     +      DE   
Sbjct: 146 RNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTFKKQTDDTLRAQGGNSSLNIFDEVHT 205

Query: 203 TPDIINKSIL-GFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI 261
             + I +S+  G   + +  +   +TS   + +G +  +     E +K  +         
Sbjct: 206 YGEDITESVNKGSRQKQDNWQSICITSGGLKRDGLYDKLV----ERFKSEEEFYNDRSFG 261

Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQ 290
                E         +    + ++G  P+
Sbjct: 262 LLYMLENHEQVKDKKNWTMALPLIGDVPK 290


>gi|67484208|ref|XP_657324.1| U5 snRNP-specific 200kd protein [Entamoeba histolytica HM-1:IMSS]
 gi|56474579|gb|EAL51944.1| U5 snRNP-specific 200kd protein, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 1799

 Score = 40.7 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 52/173 (30%), Gaps = 14/173 (8%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIF----KCAISAGRGIGKTTLNAWMMLWLI----ST 104
            W  + +  +  + +   +   PT+F       + A  G GKTT+    +L  +     T
Sbjct: 439 EWAQKSLMPL-KYLNRMQSTIYPTVFETDDNVLVCAPTGAGKTTVALLTILHEVKKAKQT 497

Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
                II IA  ++ ++  +     K  ++       ++  +S   S    EL E  + +
Sbjct: 498 HEQFKIIYIAPMKSLVQEIVGTLQGKLENL-----GMKVAEMSGDSSLTKKELEETDVIV 552

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217
            +                        +   +  DE     D     +      
Sbjct: 553 ATPEKIDVITRKIGGLGSGCGHGIFEYLKVMIIDEVHLLHDTRGPVLEALVAR 605


>gi|259489484|tpe|CBF89793.1| TPA: DNA helicase (Eurofung) [Aspergillus nidulans FGSC A4]
          Length = 971

 Score = 40.7 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 53/158 (33%), Gaps = 12/158 (7%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
           +   ++   G+GKT + A +ML  +       II +A ++  +   + A +   ++ +P 
Sbjct: 174 YNLLVALPTGLGKTFIAATIMLNWLRWTKSAQIIFVAPTKPLVAQQISACLR--IAGIPR 231

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
                +   +          +        + + +T +T + +       P     + +  
Sbjct: 232 SQTTMLTGEAP-------PGIRAEEWKSKRVFFMTPQTLTNDLKSGIADP--KRIVLLVV 282

Query: 198 DEASGTPDIINKS-ILGFFTELNPNRFWIMTSNTRRLN 234
           DEA           ++ F    N +   +  + T    
Sbjct: 283 DEAHRATGGYAYVEVVKFLRRFNQSFRVLALTATPGST 320


>gi|158337176|ref|YP_001518351.1| DEAD/DEAH box-like helicase [Acaryochloris marina MBIC11017]
 gi|158307417|gb|ABW29034.1| DEAD/DEAH box-like helicase [Acaryochloris marina MBIC11017]
          Length = 909

 Score = 40.7 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 40/323 (12%), Positives = 88/323 (27%), Gaps = 40/323 (12%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            +Q  F   +D      +N  +       +SA  G GKT +     ++      G  +  
Sbjct: 7   EFQQLFPYQLDEFQQQAINALDANQ-SVVVSAPTGSGKT-MVGEYAIYRALQH-GQRVFY 63

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
               +      L      +          ++      P       + +++   +    + 
Sbjct: 64  TTPLKALSNQKLRDFQHMFGDQAVGLLTGDLSVNRSAPILVMTTEIFRNILYGTLTDVVN 123

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI-----INKSILGFFTELNPNRFWIMT 227
                                +V  DE     D        +SI+    ++         
Sbjct: 124 TSL--------------EGVTSVILDECHYMNDRQRGTVWEESIIYCPADIQLIALSATV 169

Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE------GIDSGFHEGIISRYGLDSDVAR 281
           +N ++L  W   +           + D R V            F         L+  +  
Sbjct: 170 ANAQQLVDWMSWVHGPTQ----LIESDWRPVPLAYFFANAKGLFPLLNQKHTALNPRLKA 225

Query: 282 I--EILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRG 339
              +  G   Q+  ++      ++    RE +    A   +    + +G D+TV      
Sbjct: 226 QAKKHHGHRHQRRADSPDVIAVLQHLREREMLP---AIYFI---FSRKGCDRTVESTAHL 279

Query: 340 NIIEHIFDWSAKLIQETNQEGCP 362
           N++        ++  ET ++  P
Sbjct: 280 NLLTPAESAQMQIQIETFRQQHP 302


>gi|121714731|ref|XP_001274976.1| RNA helicase/RNAse III, putative [Aspergillus clavatus NRRL 1]
 gi|158706439|sp|A1C9M6|DCL2_ASPCL RecName: Full=Dicer-like protein 2; Includes: RecName:
           Full=Endoribonuclease dcl2; Includes: RecName:
           Full=ATP-dependent helicase dcl2
 gi|119403130|gb|EAW13550.1| RNA helicase/RNAse III, putative [Aspergillus clavatus NRRL 1]
          Length = 1389

 Score = 40.7 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 28/264 (10%), Positives = 66/264 (25%), Gaps = 28/264 (10%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +QLE +EA                    ++   G GKT +    +   + + P   II
Sbjct: 17  RNYQLEMLEA-------------SMKENIIVAMDTGSGKTHIAVLRIKAELDSCPPDKII 63

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
                   L       ++  L  +  R    +  + L       + + + + +    Y +
Sbjct: 64  WFLAPTVALCTQQHKVIASNLPAVQTRTLTGLDKVELWTEQAIWDAILKDVRVVVSTYAV 123

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII------NKSILGFFTELNP---NR 222
                S            +    +  DEA                     ++  P    R
Sbjct: 124 LADALSHG------FMRMSRLALIIFDEAHHCMRKHAANKIMQDFYHPTVSKFGPSAVPR 177

Query: 223 FWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI 282
              +T++    +            D           E +       +        D   +
Sbjct: 178 IMGLTASPVVRSNREELFTIETNLDAVCKTPRAHRQELLKFSHRPELKQLLYEPPDPMGL 237

Query: 283 EILGQFPQQEVNNFIPHNYIEEAM 306
           ++  Q  +  +  +   +  ++  
Sbjct: 238 QVSSQTLRALIEAWETLDIEDDPY 261


>gi|313763503|gb|EFS34867.1| type III restriction enzyme, res subunit [Propionibacterium acnes
           HL013PA1]
 gi|313793892|gb|EFS41916.1| type III restriction enzyme, res subunit [Propionibacterium acnes
           HL110PA1]
 gi|313801283|gb|EFS42534.1| type III restriction enzyme, res subunit [Propionibacterium acnes
           HL110PA2]
 gi|313816685|gb|EFS54399.1| type III restriction enzyme, res subunit [Propionibacterium acnes
           HL059PA1]
 gi|313829488|gb|EFS67202.1| type III restriction enzyme, res subunit [Propionibacterium acnes
           HL063PA2]
 gi|313839994|gb|EFS77708.1| type III restriction enzyme, res subunit [Propionibacterium acnes
           HL086PA1]
 gi|314914801|gb|EFS78632.1| type III restriction enzyme, res subunit [Propionibacterium acnes
           HL005PA4]
 gi|314919382|gb|EFS83213.1| type III restriction enzyme, res subunit [Propionibacterium acnes
           HL050PA1]
 gi|314920710|gb|EFS84541.1| type III restriction enzyme, res subunit [Propionibacterium acnes
           HL050PA3]
 gi|314930590|gb|EFS94421.1| type III restriction enzyme, res subunit [Propionibacterium acnes
           HL067PA1]
 gi|314954455|gb|EFS98861.1| type III restriction enzyme, res subunit [Propionibacterium acnes
           HL027PA1]
 gi|314957554|gb|EFT01657.1| type III restriction enzyme, res subunit [Propionibacterium acnes
           HL002PA1]
 gi|314963753|gb|EFT07853.1| type III restriction enzyme, res subunit [Propionibacterium acnes
           HL082PA1]
 gi|314968419|gb|EFT12517.1| type III restriction enzyme, res subunit [Propionibacterium acnes
           HL037PA1]
 gi|315079601|gb|EFT51594.1| type III restriction enzyme, res subunit [Propionibacterium acnes
           HL053PA2]
 gi|315099131|gb|EFT71107.1| type III restriction enzyme, res subunit [Propionibacterium acnes
           HL059PA2]
 gi|315100386|gb|EFT72362.1| type III restriction enzyme, res subunit [Propionibacterium acnes
           HL046PA1]
 gi|315109108|gb|EFT81084.1| type III restriction enzyme, res subunit [Propionibacterium acnes
           HL030PA2]
 gi|327452081|gb|EGE98735.1| type III restriction enzyme, res subunit [Propionibacterium acnes
           HL092PA1]
 gi|327454882|gb|EGF01537.1| type III restriction enzyme, res subunit [Propionibacterium acnes
           HL087PA3]
 gi|327457834|gb|EGF04489.1| type III restriction enzyme, res subunit [Propionibacterium acnes
           HL083PA2]
 gi|328755286|gb|EGF68902.1| type III restriction enzyme, res subunit [Propionibacterium acnes
           HL087PA1]
 gi|328758233|gb|EGF71849.1| type III restriction enzyme, res subunit [Propionibacterium acnes
           HL025PA2]
          Length = 303

 Score = 40.7 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 46/165 (27%), Gaps = 13/165 (7%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE--TQLKNTLWAEVSK 130
                 +  ++   G+GKT     ++  LI    G  I+ +       Q++N +W+  + 
Sbjct: 120 PENLRPRILLADAVGLGKTIEIGMILSELIRRGRGERILIVCPRHVLEQMQNEMWSRFAI 179

Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
               L       ++         ++      + +D+                     H  
Sbjct: 180 PFVRLDSVGLQRVKQKIPANRNPFSWYKRVIISMDTLKQDRFT-----------HDLHRH 228

Query: 191 HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
              AV  DE+        ++     T        I+ S T     
Sbjct: 229 EWNAVVIDESHNVTGDTTQNNRLTRTLAPNTDALILASATPHNGN 273


>gi|171060955|ref|YP_001793304.1| type III restriction protein res subunit [Leptothrix cholodnii
           SP-6]
 gi|170778400|gb|ACB36539.1| type III restriction protein res subunit [Leptothrix cholodnii
           SP-6]
          Length = 1058

 Score = 40.7 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 60/206 (29%), Gaps = 31/206 (15%)

Query: 33  MRFFPWGIKGKPLEHFS-QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT 91
              F  G     +  F  QP  +Q E +E +          S+       ++A  G GKT
Sbjct: 312 RESFGGGEPTATISFFDLQPKTYQQEMLEQL------ITERSHGRNRNLLVAA-TGTGKT 364

Query: 92  TLNAWMMLWLISTRPGM-SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
            + A+          G   ++ +A+ E  L+  L      +  +L    + ++ +    P
Sbjct: 365 VVAAFDYRNTCRVEGGRPRLLFVAHREEILRQAL----RTYREVLRDPEFGDLLTGGNQP 420

Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS 210
             W                 +     S    D        H   V  DE          +
Sbjct: 421 ERWDH---------------LFATIDSVTSRDLVTTVGADHWHTVVVDECHRLAADRFDA 465

Query: 211 ILGFFTELNPNRFWIMTSNTRRLNGW 236
            +       P+    +T+   R +G 
Sbjct: 466 FVKSVR---PSVLLGLTATPERSDGQ 488


>gi|170030072|ref|XP_001842914.1| potentail helicase MOV-10 [Culex quinquefasciatus]
 gi|167865920|gb|EDS29303.1| potentail helicase MOV-10 [Culex quinquefasciatus]
          Length = 989

 Score = 40.7 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 51/212 (24%), Gaps = 19/212 (8%)

Query: 34  RFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCH--SNVNNSNPTIFKCAISAGRGIGKT 91
            FFP     K LE+  +   W    +E          N+ N         +    G GKT
Sbjct: 503 LFFP-EEAPKQLENAKEIDSWFNPSLEGNVEQQTAVRNIVNRTAYPLPYILFGPPGTGKT 561

Query: 92  TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE--------VSKWLSMLPHR---HW 140
           T     ++ + +  P   I+  A S                   + ++ S    +     
Sbjct: 562 TTLVEAIVQICTRHPSEHILVTAQSNAACDELAVRLLHYLAPKSIYRFYSRSIEKRLEEL 621

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
            E      + +              ++    +               H  H   VF DE 
Sbjct: 622 PEPLKQISNLADGVFLWPPWETLYKTRVIVCSLTVCGRLVQGNMKPNHFRH---VFVDEC 678

Query: 201 SGTPDIINKSILGFFTELNPNRF--WIMTSNT 230
               +      L              ++  + 
Sbjct: 679 GSASEPATLVALAGLVSKRRKIPASVVLAGDP 710


>gi|160895971|ref|YP_001561553.1| exodeoxyribonuclease V subunit alpha [Delftia acidovorans SPH-1]
 gi|160361555|gb|ABX33168.1| exodeoxyribonuclease V, alpha subunit [Delftia acidovorans SPH-1]
          Length = 735

 Score = 40.7 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 49/188 (26%), Gaps = 23/188 (12%)

Query: 38  WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI-SAGRGIGKTTLNAW 96
           W  +  P      P  WQ              +  +     + ++ + G G GKT   A 
Sbjct: 220 WLDRLFPPAAGGGPVDWQK-------------LACALALRGRLSVITGGPGTGKTYTAAR 266

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
           ++  L +T P            QL+  L A   K  + L       +  L     G    
Sbjct: 267 LLALLFATAPDA---------GQLRVALAAPTGKAAARLKQSIDGALLQLQGSMGGEIDL 317

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT 216
                    ++          + R   F          +  DEAS     +  ++L    
Sbjct: 318 AGLVQRMGAARTLHSMLGARPDTRHWGFHAGRQLDVDVLIVDEASMVHLEMMAALLEALP 377

Query: 217 ELNPNRFW 224
                   
Sbjct: 378 AGARLVLL 385


>gi|262396801|ref|YP_003288654.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
 gi|269966728|ref|ZP_06180805.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
 gi|262340395|gb|ACY54189.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
 gi|269828651|gb|EEZ82908.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
          Length = 430

 Score = 40.7 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 29/272 (10%), Positives = 78/272 (28%), Gaps = 38/272 (13%)

Query: 87  GIGKTTLNAWMMLWLIST------RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           G GKT   +  M+  +        R     + +A +          E+++ ++    + +
Sbjct: 48  GTGKTAAFSLPMIQQLLDSNRSASRKTARALILAPT---------RELAEQIADNI-KAY 97

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
            +  +LS+       ++  Q   +++    +       E           H   +  DEA
Sbjct: 98  TKYTNLSVAAIFGGRKMSSQVAALENGVDILVATPGRLEEHIEQGNVSVAHLEFLVFDEA 157

Query: 201 SGTPDIIN--KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
               D+                 +  + ++ T               +  +  + +T   
Sbjct: 158 DRILDMGFIHAVRKIMLDVDTDPQIMMFSATTSSQLNLLAKDILRKPKRIEVERANTTAQ 217

Query: 259 EGIDSGFHEGIISRYGLDSDV-----ARIEILGQFPQQEVNNFI-------------PHN 300
                 +      +  L S++      +  ++    ++  N  +               +
Sbjct: 218 TVAHVLYPVDQERKTELLSELIGRKNWKQVLVFVNYKETANEVVKELKLDGIKAVVCHGD 277

Query: 301 YIEEAMSREAID--DLYAPLIMGCDIAGEGGD 330
             + A  R   +     A +++  D+A  G D
Sbjct: 278 RAQSARRRALEEFKSGKARVMVATDVAARGLD 309


>gi|281416255|ref|YP_003347604.1| terminase large subunit [Enterococcus phage phiFL3A]
 gi|270209520|gb|ACZ64061.1| terminase large subunit [Enterococcus phage phiFL3A]
          Length = 239

 Score = 40.3 bits (92), Expect = 0.42,   Method: Composition-based stats.
 Identities = 20/201 (9%), Positives = 56/201 (27%), Gaps = 21/201 (10%)

Query: 94  NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
            A +++  +  R  ++ + I   +  ++ +++ ++   +       +F++    +     
Sbjct: 42  IAHIIV-QLIMRYPVNAVAIRYVDNTIELSIFEQIKWAIEEQGVSKYFKVNKSPMK---- 96

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSIL 212
                   +    +   I  R          +          + +E A    +   K+I 
Sbjct: 97  --------ITYKPRGNYIVFRGAQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTIT 148

Query: 213 GFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDWKRYQIDTRTVEGIDSGF 265
                          +  + N   R   W    +      E+   +    +    I   F
Sbjct: 149 NSLLRGELADGLFYKFFYSYNPPKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAF 208

Query: 266 HEGIISRYGLDSDVARIEILG 286
            E + +    +   A  E  G
Sbjct: 209 IEEVNATRAKNPKRAEWEYDG 229


>gi|254581536|ref|XP_002496753.1| ZYRO0D07348p [Zygosaccharomyces rouxii]
 gi|238939645|emb|CAR27820.1| ZYRO0D07348p [Zygosaccharomyces rouxii]
          Length = 1960

 Score = 40.3 bits (92), Expect = 0.42,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 35/125 (28%), Gaps = 14/125 (11%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTLWAEVSKWLSML-P 136
               + +  G GKT + A + +W      PG  I+ IA  +  ++      V  W   + P
Sbjct: 1157 NVFVGSPTGSGKT-VIAELAMWHAFRDFPGKKIVYIAPMKALVRER----VDDWRKKITP 1211

Query: 137  HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
                  ++                 +    + +    R +   R              V 
Sbjct: 1212 VTGDRVVELTGDSLPDPRDVRDSTIVITTPEKFDGISRNWQTRRFV-------QDVSLVI 1264

Query: 197  NDEAS 201
             DE  
Sbjct: 1265 MDEIH 1269


>gi|210621168|ref|ZP_03292510.1| hypothetical protein CLOHIR_00453 [Clostridium hiranonis DSM 13275]
 gi|210154905|gb|EEA85911.1| hypothetical protein CLOHIR_00453 [Clostridium hiranonis DSM 13275]
          Length = 1064

 Score = 40.3 bits (92), Expect = 0.42,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 58/187 (31%), Gaps = 30/187 (16%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG--M 108
           P+ +Q E ++ +      +        +K  + A  G GKT ++A          P    
Sbjct: 332 PYSYQQEILDKL------DAERKVRGHYKNLVVAATGTGKTVISALDYKRFRKENPDKPC 385

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            ++ +A+ E  LK +++      L        F            +  +           
Sbjct: 386 RLLFVAHREEILKQSMYT-FRAVLKDANFGDMFVGNYKPDSLDNLFISI----------- 433

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
            T   + + E+    F          +  DE         +S+    T   PN    +T+
Sbjct: 434 QTFNSQKFIEKTDKDF-------YDYIIVDEFHHAAAPTYQSL---LTYYEPNILLGLTA 483

Query: 229 NTRRLNG 235
              R++G
Sbjct: 484 TPERMDG 490


>gi|51850387|dbj|BAD42421.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.42,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|296426050|ref|XP_002842549.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295638821|emb|CAZ80284.1| unnamed protein product [Tuber melanosporum]
          Length = 1003

 Score = 40.3 bits (92), Expect = 0.42,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 36/118 (30%), Gaps = 3/118 (2%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKTT  A ++        G S++  + + T + N L    +  +  L      ++   
Sbjct: 551 GTGKTTTIAHII--RALVGQGKSVLLTSYTHTAVDNILLKIKNDNIDTLRLGSGTKIHP- 607

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
            +      AE  + S     + + +     +                    DEAS   
Sbjct: 608 EVKSFAQLAEGQKTSFEELRETFHMPKIVATTCLGVNHPIFSERKFDYCIVDEASQIT 665


>gi|290891687|ref|ZP_06554735.1| hypothetical protein AWRIB429_2125 [Oenococcus oeni AWRIB429]
 gi|290478671|gb|EFD87347.1| hypothetical protein AWRIB429_2125 [Oenococcus oeni AWRIB429]
          Length = 540

 Score = 40.3 bits (92), Expect = 0.42,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 52/188 (27%), Gaps = 25/188 (13%)

Query: 50  QPHRWQLEFM--EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA-WMMLWLIS-TR 105
            P RW  E M    +       VN  N          GRG GK++L A  ++ W+I   +
Sbjct: 68  PPQRWWYELMLGYDMVDEKGIQVNLVNEIFLNL----GRGSGKSSLMATRVLNWMILGGQ 123

Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
            G   + IA   TQ ++                            +       +      
Sbjct: 124 YGGESLVIAYDNTQARHVF---------------DQVRNQTEASDTLRVYNENKIFKSTK 168

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225
                 + +T  +++ +  +     +      DE     + I +S+            W 
Sbjct: 169 QGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKG--SRQKQDNWQ 226

Query: 226 MTSNTRRL 233
               T   
Sbjct: 227 SIYITSGG 234


>gi|288916279|ref|ZP_06410658.1| Terminase [Frankia sp. EUN1f]
 gi|288352258|gb|EFC86456.1| Terminase [Frankia sp. EUN1f]
          Length = 546

 Score = 40.3 bits (92), Expect = 0.42,   Method: Composition-based stats.
 Identities = 25/197 (12%), Positives = 58/197 (29%), Gaps = 22/197 (11%)

Query: 52  HRWQL-EFMEAVDVHCHSNVNNSNPTI-FKCA-ISAGRGIGKTTLNAWMMLWLISTR-PG 107
             WQ  E +  +      +         ++ A I  GR  GK+ L + + L+ +      
Sbjct: 45  EPWQRDEIIRPMFGTVMYDPQLEQWVRQYRLAWIELGRKNGKSELLSALALYFLCADGEE 104

Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
            + +  A  +      ++    + + + P              S     L  +   ID K
Sbjct: 105 SAEVYGAACDRDQAALVYNVAKRMVELSPV------------LSKRLEVLDSKKRIIDPK 152

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIM 226
             ++     ++   +    PH      +  DE    P+  +  ++       +       
Sbjct: 153 TNSVYQVLAADAGGNLGQNPHA-----IVFDEVLTQPNRELWDALRTGMGARSQPIMIAA 207

Query: 227 TSNTRRLNGWFYDIFNI 243
           T+     N +  +    
Sbjct: 208 TTAGNTGNDFCLEEHEY 224


>gi|212539558|ref|XP_002149934.1| DEAD box helicase Mph1, putative [Penicillium marneffei ATCC 18224]
 gi|210067233|gb|EEA21325.1| DEAD box helicase Mph1, putative [Penicillium marneffei ATCC 18224]
          Length = 1129

 Score = 40.3 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 48/158 (30%), Gaps = 12/158 (7%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
           +   ++   G+GKT + A +ML          I+  A ++          VS+ ++    
Sbjct: 310 YNLLVALPTGLGKTFIAATVMLNWFRWTKDAQIVFTAPTK--------PLVSQQVAACLG 361

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
                    +L  +G              + + +T +T   +       P     + +  
Sbjct: 362 IAGIPRSDTTL-LTGNVPPGTRAEEWQTKRVFFMTPQTLINDLKTGIADP--KRIVLLVV 418

Query: 198 DEASGTPDIINKS-ILGFFTELNPNRFWIMTSNTRRLN 234
           DEA           ++ F    N +   +  + T    
Sbjct: 419 DEAHRATGGYAYVEVVKFLRRFNQSFRVLALTATPGST 456


>gi|196230475|ref|ZP_03129337.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
           Ellin428]
 gi|196225405|gb|EDY19913.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
           Ellin428]
          Length = 591

 Score = 40.3 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 55/237 (23%), Gaps = 15/237 (6%)

Query: 43  KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102
             L    +  +   +          S       T       +  G GKT   A   +  +
Sbjct: 7   TELGLSPELLKAVAKMGFEEASPIQSETIPQLLTGADVVGLSQTGSGKTAAFAIPAIERV 66

Query: 103 STR-PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
                   ++ +  +          E++  ++    +  F  + +   P         Q 
Sbjct: 67  DGNLRAPQVLILCPT---------RELAMQVAEEVAKLAFFKRGVRELPIYGGQSYDRQL 117

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL--- 218
            G+      I                       +  DEA    D+  +  +         
Sbjct: 118 RGLRDGAQIIIGTPGRVMDHLERKTLRLDQVGMIILDEADRMLDMGFRDDIETILGQAPA 177

Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275
                +   +    +N         P+    R Q    TV  ID  ++E        
Sbjct: 178 ERQTVFFSATMPPAINQLVKKYTKEPVN--VRIQAQEMTVPAIDQSYYEVDRRSKLE 232


>gi|116873155|ref|YP_849936.1| helicase domain-containing protein [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116742033|emb|CAK21157.1| helicase domain protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 442

 Score = 40.3 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 33/152 (21%), Gaps = 11/152 (7%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +WQ    E         +             +  G GKT   A   L  I   P    +
Sbjct: 12  EKWQEHGYETPTE-IQRAMYQPIKDGADVLAVSPTGTGKTVAYALPTLEKIEAIPKTQWL 70

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +A S   +                 R W     L++      A +  Q   +  K   I
Sbjct: 71  VLAPSHELVMQITE----------VIRSWLPSDDLTVISLIGGANVKRQIEKLKKKPQII 120

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
                                  +  DE    
Sbjct: 121 VASPGRALELIKQKKIKMHEIKMITLDECDQL 152


>gi|288556427|ref|YP_003428362.1| HKD family nuclease fused to DNA/RNA helicase of superfamily II
           [Bacillus pseudofirmus OF4]
 gi|288547587|gb|ADC51470.1| HKD family nuclease fused to DNA/RNA helicase of superfamily II
           [Bacillus pseudofirmus OF4]
          Length = 389

 Score = 40.3 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 53/185 (28%), Gaps = 36/185 (19%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P + QLE +E ++       +       K  +    G+GKT L+A         R    +
Sbjct: 213 PRQAQLEALEELERTLDDGYD-------KSLVVMATGLGKTYLSA------FFARRFKRV 259

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + IA+ E         E+        +    +      +      +              
Sbjct: 260 LFIAHRE---------EILYQAKKTFNHVMPDRTCGIFNAREKERDAD-----------F 299

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
           +    +S                 +  DE         + +L +F+    +    +T+  
Sbjct: 300 VFASIFSIANQKQVEEFDKDAFDLIIIDEFHHAAARSYQHVLEYFS---YSFLLGLTATP 356

Query: 231 RRLNG 235
            R++G
Sbjct: 357 DRMDG 361


>gi|228966921|ref|ZP_04127961.1| phage terminase, large subunit [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|229061552|ref|ZP_04198896.1| phage terminase, large subunit [Bacillus cereus AH603]
 gi|228717786|gb|EEL69436.1| phage terminase, large subunit [Bacillus cereus AH603]
 gi|228792774|gb|EEM40336.1| phage terminase, large subunit [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 539

 Score = 40.3 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 55/184 (29%), Gaps = 24/184 (13%)

Query: 54  WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS---I 110
           WQ +F+ A+  +      +      +  I  GRG GKT   A+   ++++   G++   I
Sbjct: 54  WQ-KFLNALM-YGVRFKKDDRIVFDEVLILMGRGGGKTGYMAYDSFYMMTGHHGINNYDI 111

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
             +A SE Q K   + +V   ++                   +   L E      +    
Sbjct: 112 DVVATSEDQAK-RTFTDVYNVIN--------TPSFKEKFKKIFKWTLEEIQHKKTNSVMN 162

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
                   +               V  DEA         +I  + +     R   +   T
Sbjct: 163 YNTSNSRTKD--------GKRTGCVIFDEAHEY--ENYDNINVYTSGQGKVRGSRIIYTT 212

Query: 231 RRLN 234
              +
Sbjct: 213 TDGH 216


>gi|194366277|ref|YP_002028887.1| Terminase [Stenotrophomonas maltophilia R551-3]
 gi|194349081|gb|ACF52204.1| Terminase [Stenotrophomonas maltophilia R551-3]
          Length = 602

 Score = 40.3 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 37/312 (11%), Positives = 78/312 (25%), Gaps = 63/312 (20%)

Query: 70  VNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTRP--GMSIICIANSETQLKNTLWA 126
                   F+ A I  G+G GK+ +   + L  +      G  +  +A+ + Q    L+ 
Sbjct: 78  KQADGARRFRRAYIEEGKGNGKSPMAGGIALIGLCADQEAGAQVYAVASHKDQA-GILFR 136

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
           +  K +   P      ++       G   E                   +     D    
Sbjct: 137 DAVKMVKASP-----ALKKRLEFSGGEGKEYNIAHHKSQ--------SYFRPASRDVGKT 183

Query: 187 PHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL 245
                   V  DE     D  I + +   F        +++T++    N   +      +
Sbjct: 184 GSGYRPHFVLADEVHEMADGKIIEMMENGFKFRRSPLLFMITNSGSDRNSVAWAEHEHAV 243

Query: 246 EDWKRYQIDTRTVEGIDSGFHEGII----------SRYGLDSDVA--------------- 280
           +    +               +                  D                   
Sbjct: 244 KVAAGHHEAVND-PTFVGEVIDDRTFSFVCGLDDGDEPLEDPACWVKANPMLGITITDEY 302

Query: 281 ---RIEILGQFP--------------QQEVNNFIPHNYIEEAMSR-EAIDDLYAPLIMGC 322
              R+++  Q P                  + ++    +E AM   +        L +G 
Sbjct: 303 LQGRVDLAKQIPSKLNEILRLNFCMWTDADHAWMSREIVEPAMQSFDKAQHHGKRLHLGL 362

Query: 323 DIAGEGGDKTVV 334
           D++ +  D T +
Sbjct: 363 DLS-QNRDITAL 373


>gi|171058461|ref|YP_001790810.1| exodeoxyribonuclease V subunit alpha [Leptothrix cholodnii SP-6]
 gi|170775906|gb|ACB34045.1| exodeoxyribonuclease V, alpha subunit [Leptothrix cholodnii SP-6]
          Length = 739

 Score = 40.3 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 51/177 (28%), Gaps = 37/177 (20%)

Query: 41  KGKPLEHFSQPHR--WQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWM 97
             +       P R  WQ                 +     + A I+ G G GKT   A +
Sbjct: 231 LDRLFGGPPAPDRFDWQRSAC-------------AIALRGRLALITGGPGTGKTYTVARL 277

Query: 98  MLWLISTRPGM---SIICIANSET---QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151
           +  +++  P      I   A +     +LK ++ + + +  + LP     +   L    S
Sbjct: 278 LALVMAVHPQPQALRIALAAPTGKAAARLKQSIDSALQQLAAALP--GALDWGLLQQRLS 335

Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208
                        D++ +    R             H      +  DEAS     + 
Sbjct: 336 QSLTLHKLLGARPDTRRFGRDAR-------------HPLEVDLLVVDEASMVHLEMM 379


>gi|328856768|gb|EGG05888.1| hypothetical protein MELLADRAFT_36442 [Melampsora larici-populina
           98AG31]
          Length = 878

 Score = 40.3 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 19/181 (10%), Positives = 48/181 (26%), Gaps = 19/181 (10%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GMS 109
            +QL+ +  +       +N               G+GKT  +  +M +L           
Sbjct: 201 EYQLKGLNWLANLYEQGINGILADEM--------GLGKTVQSISLMAYLAEVHNIWGPFL 252

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           +I  A++          E+++++  L    ++           +      + +  D +  
Sbjct: 253 VIAPASTLHN----WQQEITRFVPALKALPYWGSVKDRAILRKF---WNRKHLRYDREAP 305

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                T  +                +  DEA         +        +     ++T  
Sbjct: 306 FHVVITSYQLVVQDEKYFQTLKWQYMILDEAQAIKSSS-STRWKTLLGFHCRNRLLLTGT 364

Query: 230 T 230
            
Sbjct: 365 P 365


>gi|307245128|ref|ZP_07527221.1| RNA polymerase-associated protein rapA [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307254084|ref|ZP_07535931.1| RNA polymerase-associated protein rapA [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258539|ref|ZP_07540276.1| RNA polymerase-associated protein rapA [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306854017|gb|EFM86229.1| RNA polymerase-associated protein rapA [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306863009|gb|EFM94956.1| RNA polymerase-associated protein rapA [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867443|gb|EFM99294.1| RNA polymerase-associated protein rapA [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 969

 Score = 40.3 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 26/257 (10%), Positives = 63/257 (24%), Gaps = 19/257 (7%)

Query: 33  MRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTI-FKCAISAGRGIGKT 91
                +         F  P R       ++  H           +  +  ++   G+GKT
Sbjct: 123 RFALRYRALQHQQAQFQSPLRGMRGIRASLIPHQLHIAKEVGQRVAPRVLLADEVGLGKT 182

Query: 92  TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151
                ++   + +     ++ +     Q +   W  V            F+ +  +    
Sbjct: 183 IEAGMILQQQLFSGRVERVLVLVPESLQHQ---W-LVEMLRRFNLKFSLFDEERCADFDK 238

Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211
                        DS+   I    + E  P+       ++   +  DEA           
Sbjct: 239 ADEDGNDVSENPFDSEALVIASIDWLESSPNRAKQVLASNWDMLIVDEAHHL---EWSEN 295

Query: 212 LGFF-------TELNPNRFWIMTSNTR--RLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
                               ++T+          F  +  +  + +  Y  ++   E  D
Sbjct: 296 EPSVGYQFVERLSKQTPAVLLLTATPEQLGQESHFARLALLDADRF--YDYNSFVAEQKD 353

Query: 263 SGFHEGIISRYGLDSDV 279
                  ++    D  +
Sbjct: 354 YKPVTDAVATLLNDKPL 370


>gi|290993372|ref|XP_002679307.1| dicer helicase [Naegleria gruberi]
 gi|284092923|gb|EFC46563.1| dicer helicase [Naegleria gruberi]
          Length = 857

 Score = 40.3 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 48/161 (29%), Gaps = 28/161 (17%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q E +     HC               I A  G GKT + A ++  +++  P   ++
Sbjct: 108 REYQKELV----EHCKDE---------NTIIVAPTGAGKTFIAALLIHHMLNLNPFKKVL 154

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            I N  + ++       ++ L                    W  E  + ++ + +    +
Sbjct: 155 FIVNQISLVEQ-----QARALREFGIEKVGAFHGEKKSIKNWKLETKDFTVLVCTIQIIL 209

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSI 211
               YS+                +  DE   T  +   K +
Sbjct: 210 NVLQYSDI---------FDDLQLLIFDECHHTHSNHPFKVL 241


>gi|237745794|ref|ZP_04576274.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
 gi|229377145|gb|EEO27236.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
          Length = 585

 Score = 40.3 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 36/321 (11%), Positives = 84/321 (26%), Gaps = 33/321 (10%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
           F++++  +     N+ N      AI   R IG T   A   L       G + I ++ S 
Sbjct: 138 FLDSLFDYQKEWWNSRNSRTR--AILKSRQIGATWYFAREALMDAVLT-GGNQIFLSASR 194

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
            Q        V             +   LS     ++     ++      ++      ++
Sbjct: 195 AQAYVFRQYIVQFAKEATGVELKGDPIVLSNGAHLYFLGTNARTAQGYHGNFYFDEFFWT 254

Query: 178 EERPD-----TFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232
            +  +     + +  H       F+  ++ + +         F +       +       
Sbjct: 255 FKFEELNKVASGMALHKRWRKTYFSTPSAMSHEAYPFWTGDAFNKRRRKEEQVRI---DV 311

Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292
            + W  +        W++        +G    F    +  Y    D     ++  F   +
Sbjct: 312 SHKWLAEGRLCEDRIWRQIVTIEDAEKGGCDLFDIDELRNYEYSPDQFDNLLMCNFID-D 370

Query: 293 VNNFIPHNYIEEAM-SREAIDDLYAP----------LIMGCDIAGEGGDKTVVVFRRGN- 340
             +  P + ++  M       + Y P          + +G D +  G   +         
Sbjct: 371 TASVFPLSELQRCMVDSWEAWNDYKPFTARPFGNRPVWVGYDPSRSGD--SAGCVVMAPP 428

Query: 341 -------IIEHIFDWSAKLIQ 354
                   I     +      
Sbjct: 429 LTFPGKFRIIEKHQYRGMDFA 449


>gi|239840444|gb|ACS32027.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ K     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEEKDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|209976540|gb|ACJ04184.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ K     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEEKDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|197310724|gb|ACH61717.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ K     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEEKDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|190161829|gb|ACE63533.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ K     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEEKDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|169635097|gb|ACA58324.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ K     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEEKDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|168483712|ref|ZP_02708664.1| putative phage terminase, large subunit [Streptococcus pneumoniae
           CDC1873-00]
 gi|168484664|ref|ZP_02709616.1| putative phage terminase, large subunit [Streptococcus pneumoniae
           CDC1873-00]
 gi|168484815|ref|ZP_02709760.1| putative phage terminase, large subunit [Streptococcus pneumoniae
           CDC1873-00]
 gi|169833564|ref|YP_001693473.1| putative phage terminase, large subunit [Streptococcus pneumoniae
           Hungary19A-6]
 gi|307066681|ref|YP_003875647.1| phage terminase-like protein large subunit [Streptococcus
           pneumoniae AP200]
 gi|168996066|gb|ACA36678.1| putative phage terminase, large subunit [Streptococcus pneumoniae
           Hungary19A-6]
 gi|172042018|gb|EDT50064.1| putative phage terminase, large subunit [Streptococcus pneumoniae
           CDC1873-00]
 gi|172042118|gb|EDT50164.1| putative phage terminase, large subunit [Streptococcus pneumoniae
           CDC1873-00]
 gi|172042965|gb|EDT51011.1| putative phage terminase, large subunit [Streptococcus pneumoniae
           CDC1873-00]
 gi|306408218|gb|ADM83645.1| Phage terminase-like protein, large subunit [Streptococcus phage
           PhiSpn_200]
          Length = 570

 Score = 40.3 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 32/254 (12%), Positives = 63/254 (24%), Gaps = 27/254 (10%)

Query: 32  VMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT 91
           V     WG         + P       +E         + +  P      I   RG GKT
Sbjct: 75  VWLETTWGFYHTVEVTKTDPDT-----LEEYKDFEERRLIHEVP------IIVPRGTGKT 123

Query: 92  TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151
           TL + +            +  I + E      L A   +    L +     + +      
Sbjct: 124 TLGSAI----------GEVGQIIDGEWGADIQLLAYSREQAGYLFNASRAMLSNEESLLH 173

Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211
                 + +S          T  +    +   +     T+      DE     D   K +
Sbjct: 174 YMREADILRSTK--QGILYETTNSLMSIKTSDYESLDGTNAHYNIFDEVHTYDDDFIKVV 231

Query: 212 LGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271
                     + WI    +         +F+     W    +D + V      +   +  
Sbjct: 232 NDG--SSRKRKNWITWYISTNGTKR-DKLFDKYYNIWVDI-LDEKIVNHSVMPWIYQLDD 287

Query: 272 RYGLDSDVARIEIL 285
              + +     + +
Sbjct: 288 VSEIHNPDMWQKAM 301


>gi|152965472|ref|YP_001361256.1| helicase c2 [Kineococcus radiotolerans SRS30216]
 gi|151359989|gb|ABS02992.1| helicase c2 [Kineococcus radiotolerans SRS30216]
          Length = 672

 Score = 40.3 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 35/156 (22%), Gaps = 11/156 (7%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
              Q     AV             +     + AG G GK+       +       G +++
Sbjct: 26  REGQATMARAVTDAIR--------SRRHLLVQAGTGTGKSMAYLVPAVAHA-VHAGRAVV 76

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI--DSKHY 169
               +       +  ++ +    +  R   E     L     Y    +   G   D    
Sbjct: 77  VTTATLALQAQVVERDLPRLAKAIAPRLHREPTWELLKGRSNYLCRNKLDGGFPSDEGTL 136

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
                  S                     E++ T D
Sbjct: 137 FDVAGASSGPDAGGEGRLGREVVRLREWAESTSTGD 172


>gi|325293201|ref|YP_004279065.1| terminase large subunit/Phage Terminase [Agrobacterium sp. H13-3]
 gi|325061054|gb|ADY64745.1| putative terminase large subunit/Phage Terminase [Agrobacterium sp.
           H13-3]
          Length = 539

 Score = 40.3 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 39/336 (11%), Positives = 79/336 (23%), Gaps = 64/336 (19%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GM 108
            RWQ   +  +      +       +    +   RG  KTTL A + L          G 
Sbjct: 47  TRWQERIVRRIYGPRTPDG---QMIVKSVLLLMPRGNRKTTLAAALALLHTIGPEAVAGG 103

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
             I  A    Q K   + E +  +          + +  ++ S     L+   +      
Sbjct: 104 QAIFAAKDSDQAK-IAFNEAAGIIR----EDKRLVAATKIYGSKTGKRLINCDVK----- 153

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMT 227
                ++  E         H      +  DE     +  + +++     +  P    + T
Sbjct: 154 -----KSSLEVLSSDGGKAHGLSPTFILADELHVWKNRELWEALKSSRVKKRPLTIIVST 208

Query: 228 ---SNTRRLNGWFYDIFNIPLED------------------------WKRYQIDTRT--V 258
               N   L   + +   I   +                        W +         V
Sbjct: 209 AGAGNENLLYDEYVNACKIATGEKFNPSYLPILFMADPDDAWDDPATWHKANPGLADGFV 268

Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYA 316
              +             +        L  +              +E      +  +    
Sbjct: 269 SIEEFENLVTDARDRPQERFAFLQYNLNIWQGASREPLFDMGIYDEGHDPNFDLAELESL 328

Query: 317 PLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352
           P  +G D++  G D T +          +  W    
Sbjct: 329 PCYIGVDMSVNG-DLTAI----------VAAWKHGD 353


>gi|322699514|gb|EFY91275.1| putative DNA helicase [Metarhizium acridum CQMa 102]
          Length = 1535

 Score = 40.3 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 36/118 (30%), Gaps = 3/118 (2%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKTT  A ++        G +++  +++ T + N L    +  + +L      ++   
Sbjct: 1047 GTGKTTTIAHII--RALVSQGKTVLLTSHTHTAVDNILLKLKTDKIPVLRLGAPAKVHPE 1104

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                +    +  +    I    +       +    +               DEAS   
Sbjct: 1105 VQDFAHLAGQPRKTFDEIKEAWHGTPIVATTCLGINHP-VFQERSFDYCIVDEASQIT 1161


>gi|317014088|gb|ADU81524.1| type II R-M system protein [Helicobacter pylori Gambia94/24]
          Length = 510

 Score = 40.3 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 53/204 (25%), Gaps = 42/204 (20%)

Query: 29  KNFVMRFFPWGIKG-------KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81
           ++F+     W            PL    +P   Q E +E    +     N          
Sbjct: 148 EDFIYSRIDWEKFDPTKTEDEIPLCDKKRPRPHQTEAIEQTKKYFSDPKNARGK-----L 202

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE-------------- 127
           I A  G GKT  +    L ++        + +A S   L    + E              
Sbjct: 203 IMAC-GTGKTYTS----LKIMEALDPKITLFLAPSIALLSQ-TFREYAQEKSEPFYASIV 256

Query: 128 --------VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI--DSKHYTITCRTYS 177
                     K  S        +   L L PS    ++L        ++K + I     S
Sbjct: 257 CSDDKTGQSKKNKSKNEDNDDIKFSELPLKPSTRLEDILSVYEKAQKENKRFIIFSTYQS 316

Query: 178 EERPDTFVGPHNTHGMAVFNDEAS 201
             R              +  DEA 
Sbjct: 317 ALRIKEAQEAGLKGIDLIICDEAH 340


>gi|263613489|gb|ACY70776.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIIREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|263613409|gb|ACY70774.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIIREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|263612959|gb|ACY70761.1| polyprotein [Dengue virus 3]
 gi|263613134|gb|ACY70766.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIIREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|263612813|gb|ACY70757.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIIREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|263612559|gb|ACY70750.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIIREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|263612527|gb|ACY70749.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIIREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|263612496|gb|ACY70748.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIIREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|238926929|ref|ZP_04658689.1| CRISPR-associated helicase Cas3 [Selenomonas flueggei ATCC 43531]
 gi|238885163|gb|EEQ48801.1| CRISPR-associated helicase Cas3 [Selenomonas flueggei ATCC 43531]
          Length = 814

 Score = 40.3 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 62/245 (25%), Gaps = 30/245 (12%)

Query: 3   RLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAV 62
           RL S + +L++ L +    AE   SF +              L  FS P   + + +  +
Sbjct: 215 RLDSAEFELDRPLTDEWETAEIWASFSD---------KLECKLAGFSLPKEPKAKKIAQL 265

Query: 63  DVHCHSN---VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET- 118
                 +        P IF+  +    G GKT  +    L          II +    + 
Sbjct: 266 RKKISDDCLKAAEEEPGIFRLCV--PTGGGKTLASMRFALQHAQRYQKKRIIVVIPYTSI 323

Query: 119 ------QLKNTLW--AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
                 ++++       + +  S +      E                   +        
Sbjct: 324 IDQNVKEIRDIFRVDEAILEHHSNVITEADGEDTESMDWRRILTERWDVPIIFT---TQV 380

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII---NKSILGFFTELNP-NRFWIM 226
               T       +    ++     V  DE    P        + + F  +          
Sbjct: 381 QFLNTLFAGGNSSIRRMNSLQDSIVIFDEIQTLPVRCTFLFNAAMNFLKDFCRITAVLCT 440

Query: 227 TSNTR 231
            +   
Sbjct: 441 ATQPP 445


>gi|332030741|gb|EGI70417.1| Fanconi anemia group M protein [Acromyrmex echinatior]
          Length = 1326

 Score = 40.3 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 24/211 (11%), Positives = 62/211 (29%), Gaps = 15/211 (7%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
               +    G+GKT + A +M       P   I+ +A ++  +      ++     ++  
Sbjct: 47  RNTMVCLPTGLGKTFIAAVVMFNFWRWYPSGKIVFLAPTKPLVAQ----QIKACYEVMGI 102

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
                     +  +G   +   +   +  +    T + +  +   + +  H      V  
Sbjct: 103 -----PNVDMIELTGAVIQKNREIAWLKKRIIFATPQVFHNDLEKSIIPSHL--IKCVVI 155

Query: 198 DEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRL--NGWFYDIFNIPLEDWKRYQID 254
           DEA            +   +  N     +  S T     +     I N+ +   +    +
Sbjct: 156 DEAHKALGKHSYCECVRILSTQNQYFRILALSATPGNKLDNVHEVIQNLNISHLELRDEN 215

Query: 255 TRT-VEGIDSGFHEGIISRYGLDSDVARIEI 284
           +   V  I+    + I+     +    +   
Sbjct: 216 SIDIVPYINKRKVDIILVPLSNELAAFKERY 246


>gi|308516967|emb|CBW47072.1| N4 gp68-like protein [Roseovarius sp. 217 phage 1]
          Length = 537

 Score = 40.3 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 29/285 (10%), Positives = 63/285 (22%), Gaps = 28/285 (9%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           K      RG  KTTL A  +   ++    +           + +++   V K +      
Sbjct: 70  KITNLCARGTAKTTLMAEYLTLYLAMFNKIPGFGAVPGMLYISDSMDNGV-KSMRESVKS 128

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC-RTYSEERPDTFVGPHNTHGMAVFN 197
            ++  + L            E  M   +K+      + +  +         N   +    
Sbjct: 129 RYYSSEFLQSWLPEEGVRFTENYMEFHNKNGGKFGVKMFGAKSGIRGTKIFNRRPVLAVM 188

Query: 198 D----EASGTPDIINKSILGFFTEL------NPNRFWIMTSNTRRLNGWFYDIFNIPL-- 245
           D    +A        ++I                   I+           Y         
Sbjct: 189 DDLISDADSKSPTAMEAINDTVYSGVQYALDPTRHKMILNGTPFNKEDIVYQAIESGAWQ 248

Query: 246 -EDWKRYQ--------IDTRTVEGIDSGFHEGIISR--YGLDSDVARIEILGQFPQQEVN 294
              W   +              +     + + +             R E++ +    E  
Sbjct: 249 VNVWPVCKEFPCEEKDFSGAWEDRFTYDYVKEMYDSSVMEGKEKSFRQELMLRITSDESR 308

Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIA---GEGGDKTVVVF 336
                     +              +  D A    +  D TV+  
Sbjct: 309 LIQESEIGWRSRQEILQKRKDYNFYITTDFATSSKQTADYTVISV 353


>gi|297529729|ref|YP_003671004.1| type III restriction protein res subunit [Geobacillus sp. C56-T3]
 gi|297252981|gb|ADI26427.1| type III restriction protein res subunit [Geobacillus sp. C56-T3]
          Length = 818

 Score = 40.3 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 24/186 (12%), Positives = 45/186 (24%), Gaps = 36/186 (19%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           QP   Q+E +E ++       +       K  +    G+GKT L A         R    
Sbjct: 223 QPRFAQVEALERLEAAYEEGYD-------KAMVVMATGLGKTYLAA------FFARRFSR 269

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           ++ IA+ E  L+                      +             L      D    
Sbjct: 270 VLFIAHREEILRQ--------------------AKQSFERVIPDRTAGLYDGNQKDGNAD 309

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
            +    ++                 +  DE         + +        P     +T+ 
Sbjct: 310 MVFASIFTLSMKKHLHSFRPDAFDLIVVDEFHHAAARSYERV---LCYFQPKFLLGITAT 366

Query: 230 TRRLNG 235
             R + 
Sbjct: 367 PDRSDN 372


>gi|120602103|ref|YP_966503.1| phage terminase GpA [Desulfovibrio vulgaris DP4]
 gi|120562332|gb|ABM28076.1| phage terminase GpA [Desulfovibrio vulgaris DP4]
          Length = 641

 Score = 40.3 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 37/298 (12%), Positives = 71/298 (23%), Gaps = 45/298 (15%)

Query: 35  FFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN 94
              W  +   +    +P RW+ E        C      S P I    I      GKT L 
Sbjct: 37  VTEWCERHFRIIGGQRPGRWRREVFPY---TCTIMDAYSLPFIRVIGICGPPQTGKTALE 93

Query: 95  AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWY 154
              + W I   PG  ++ + + +   +        + + +L      E     L      
Sbjct: 94  LGCLAWAIDRDPGP-VLMVLDQQDTAREMA---KDRVIPLLKASPPLEQYITGLADDETS 149

Query: 155 AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG- 213
             +  + M +         R  ++                +  DE         +     
Sbjct: 150 KSINLRHMTLHFGWAGSVSRLANKPVKH------------LLLDEVDKYDHDGKREAGPV 197

Query: 214 FFTELNPNRF-----WIMTSNTRRLNGW-----------FYDIFNIPL-EDWKRYQIDTR 256
                    F      ++ S+     G            F+     P    ++  +    
Sbjct: 198 SLAMKRVRTFKHTHKCMLLSSPSTPRGEIMLCLAEARVIFHYFVRCPKCGVYQEMRFTHD 257

Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILG---QFPQQEVNNFIPHNYIEEAMSREAI 311
             E                D  +AR    G    +   + +       +E    R+  
Sbjct: 258 DGEVGVVWPEGERDYAQVNDQMLARYRCRGCGALWNDHDRDV-----AVERGEWRDPE 310


>gi|310793920|gb|EFQ29381.1| type III restriction enzyme [Glomerella graminicola M1.001]
          Length = 1113

 Score = 40.3 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 52/155 (33%), Gaps = 12/155 (7%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              ++   G+GKT + A +ML          I+ +A ++          V++ +    + 
Sbjct: 197 NTLVALPTGLGKTFIAATIMLNYYRWTKDAKIVFVAPTK--------PLVAQQVDACFNI 248

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                   +L  +G  A  L  +     + + +T +T   +    +  P     + +  D
Sbjct: 249 VGIPRSETTL-LTGDTAPALRVNEWSSKRVFFMTPQTLQNDISHGYADP--KSIVLLVID 305

Query: 199 EASGTP-DIINKSILGFFTELNPNRFWIMTSNTRR 232
           EA     +     ++    + N     +  + T  
Sbjct: 306 EAHRATGEYAYAKVVKRIRQYNSYFRLLALTATPG 340


>gi|263613309|gb|ACY70771.1| polyprotein [Dengue virus 3]
 gi|263613447|gb|ACY70775.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIIREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|263613267|gb|ACY70770.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIIREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|263613236|gb|ACY70769.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIIREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|263612782|gb|ACY70756.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIIREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|259496195|gb|ACW82872.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIIREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|259496193|gb|ACW82871.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIIREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|259496191|gb|ACW82870.1| polyprotein [Dengue virus 3]
 gi|263612369|gb|ACY70744.1| polyprotein [Dengue virus 3]
 gi|263612401|gb|ACY70745.1| polyprotein [Dengue virus 3]
 gi|263612436|gb|ACY70746.1| polyprotein [Dengue virus 3]
 gi|263612466|gb|ACY70747.1| polyprotein [Dengue virus 3]
 gi|263612596|gb|ACY70751.1| polyprotein [Dengue virus 3]
 gi|263612638|gb|ACY70752.1| polyprotein [Dengue virus 3]
 gi|263612678|gb|ACY70753.1| polyprotein [Dengue virus 3]
 gi|263612716|gb|ACY70754.1| polyprotein [Dengue virus 3]
 gi|263612844|gb|ACY70758.1| polyprotein [Dengue virus 3]
 gi|263612881|gb|ACY70759.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIIREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|228918668|ref|ZP_04082093.1| ABC transporter [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228925216|ref|ZP_04088324.1| ABC transporter [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228834449|gb|EEM79980.1| ABC transporter [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228840969|gb|EEM86186.1| ABC transporter [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 536

 Score = 40.3 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 28/213 (13%), Positives = 68/213 (31%), Gaps = 31/213 (14%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
              Q E ++ +++  ++          K A+    G GKTT+    +L         +I 
Sbjct: 325 ETAQKEILKNINLEINTGE--------KLALIGSNGSGKTTIV--KLLLGFYQNYLGNIY 374

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID------ 165
               +  +LK     E+   + ++P   +    +++ +      ++ E+           
Sbjct: 375 I---NGIELKKINIRELRDRIGIIPQNIYLFENTIADNIKIGNTKITEKEFQQKINLLKK 431

Query: 166 ---------SKHYTITCRTYSEERPDTFVGPH--NTHGMAVFNDEA-SGTPDIINKSILG 213
                    +K      +  S+ +            +   +  DEA S       K+   
Sbjct: 432 QGILADLDLNKKIIENGKNLSKGQIQQIAFARAFMKNFDVLIFDEATSNMDKNARKAFKE 491

Query: 214 FFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246
             ++   N+  I  S+   L+ +    F +  +
Sbjct: 492 ILSQEFSNKICIFISHDNELSNFIDKKFVLLED 524


>gi|172707|gb|AAA35093.1| SRP receptor alpha-chain homologue [Saccharomyces cerevisiae]
          Length = 621

 Score = 40.3 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 40/145 (27%), Gaps = 8/145 (5%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
           + +  +               +  +I    G+GK+T  + +  WL+     + I+     
Sbjct: 377 DLLREIQSKRSKKDEEGKCDPYVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTF 436

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
            +     L   V     ++   H    ++        Y EL E   G       I  +  
Sbjct: 437 RSGAVEQLRVHVENLAQLMDDSHVRGSKNKRGKTGNDYVELFEAGYGGSDLVTKIAKQ-- 494

Query: 177 SEERPDTFVGPHNTHGMAVFNDEAS 201
                       + +   V  D A 
Sbjct: 495 ------AIKYARDQNFDIVLMDTAG 513


>gi|268566029|ref|XP_002639614.1| Hypothetical protein CBG12327 [Caenorhabditis briggsae]
          Length = 1043

 Score = 40.3 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 49/153 (32%), Gaps = 15/153 (9%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
              Q + +           +N       C+++AGRG GK+     + L         +I 
Sbjct: 255 TACQAKALLRFLDVITEKQSNVT-----CSLTAGRGRGKSAAV-GLSLAGAVAFGYTNIF 308

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             + +   LK  L+  V K L  L ++   + + +      +   L+   +  + K    
Sbjct: 309 VTSPTPENLKT-LFEFVVKGLDALDYQEHTDYELIQSANPEFKNCLVRVQVFREHKQTIQ 367

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                  E+              +  DEA+  P
Sbjct: 368 YISPTDVEKLGQCE--------LIVIDEAAAIP 392


>gi|325420951|gb|ADZ13190.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   V  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLVIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|312142609|ref|YP_003994055.1| type III restriction protein res subunit [Halanaerobium sp.
           'sapolanicus']
 gi|311903260|gb|ADQ13701.1| type III restriction protein res subunit [Halanaerobium sp.
           'sapolanicus']
          Length = 801

 Score = 40.3 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 23/187 (12%), Positives = 50/187 (26%), Gaps = 35/187 (18%)

Query: 49  SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108
             P   Q+E +  +++     ++          ++A  G+GKT L A+  +         
Sbjct: 198 PHPRGAQIEALYELELAREEGISEG-------IVAAATGVGKTYLAAFDSI------DYD 244

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            ++ +A+ E  LK                        L++ P+   +             
Sbjct: 245 KVLFVAHREEILKQ------------------AADTYLAIKPNKKISFFN-GQNKDKGGE 285

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
                                T    +  DE          S L   +    +    +T+
Sbjct: 286 VVFASVQTLHNERYLEEYFSQTEFNYIIIDEFH---HAAADSYLSVLSYFEADFMLGLTA 342

Query: 229 NTRRLNG 235
              R++ 
Sbjct: 343 TPYRMDN 349


>gi|312869819|ref|ZP_07729961.1| helicase C-terminal domain protein [Lactobacillus oris PB013-T2-3]
 gi|311094665|gb|EFQ52967.1| helicase C-terminal domain protein [Lactobacillus oris PB013-T2-3]
          Length = 1074

 Score = 40.3 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 47/150 (31%), Gaps = 15/150 (10%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q E + AV+               +  ++   G GKT +   +M  LI  +    I+
Sbjct: 374 RDYQKEAIRAVENAIGEGKT-------RILLAMATGTGKTRMAISLMYRLIKNKRARRIL 426

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            + + ++    T  +     +   P    + ++  +         +   ++    +    
Sbjct: 427 YLVDRQSLANQTANSLKDNKIGSQPVSSIYNVKEFTDKMPASTTRIQISTVQGMVQRLFN 486

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
           +  T  +  P  +          +  DEA 
Sbjct: 487 STDTADKPTPGMYD--------FIIVDEAH 508


>gi|254556123|ref|YP_003062540.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
 gi|300766642|ref|ZP_07076559.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308180120|ref|YP_003924248.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|254045050|gb|ACT61843.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
 gi|300495742|gb|EFK30893.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308045611|gb|ADN98154.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 444

 Score = 40.3 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 37/169 (21%), Gaps = 11/169 (6%)

Query: 66  CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW 125
             + V             A  G GKT    W ML  +    G   + +A S+     T  
Sbjct: 20  IQTAVAEPLAAGQSVLGLAPTGSGKTLAFTWPMLEALRVGEGTQALILAPSQELAMQTT- 78

Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185
                       R W ++    +      A +  Q   +      I              
Sbjct: 79  ---------NVVREWGQLIDAKVLAITGGANVKRQMEKLKKHPEVIVGTPGRITNLIADG 129

Query: 186 GPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233
                H   +  DEA     D     I             +   +    
Sbjct: 130 KIKLGHLKMMIVDEADELLTDETLDQIREILDATFAETLQLGFFSATET 178


>gi|28377939|ref|NP_784831.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
 gi|28270773|emb|CAD63678.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
          Length = 444

 Score = 40.3 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 37/169 (21%), Gaps = 11/169 (6%)

Query: 66  CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW 125
             + V             A  G GKT    W ML  +    G   + +A S+     T  
Sbjct: 20  IQTAVAEPLAAGQSVLGLAPTGSGKTLAFTWPMLEALRVGEGTQALILAPSQELAMQTT- 78

Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185
                       R W ++    +      A +  Q   +      I              
Sbjct: 79  ---------NVVREWGQLIDAKVLAITGGANVKRQMEKLKKHPEVIVGTPGRITNLIADG 129

Query: 186 GPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233
                H   +  DEA     D     I             +   +    
Sbjct: 130 KIKLGHLKMMIVDEADELLTDETLDQIREILDATFAETLQLGFFSATET 178


>gi|66826987|ref|XP_646848.1| DNA2/NAM7 helicase family protein [Dictyostelium discoideum AX4]
 gi|60474984|gb|EAL72920.1| DNA2/NAM7 helicase family protein [Dictyostelium discoideum AX4]
          Length = 2523

 Score = 40.3 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 45/156 (28%), Gaps = 16/156 (10%)

Query: 80   CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL------- 132
              I    G GKTT   +++  L++  P   I+    S   +       + K L       
Sbjct: 1612 TLIQGPPGTGKTTTIYYLLSILLAINPKFKILVCGPSHASVDEVAKRCLKKSLVNIDGKP 1671

Query: 133  ---SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189
               +M+       +       S +     ++   I +        + S  +P        
Sbjct: 1672 YLPNMVRIGKLQNISPDCHRISLFDKTPAQRKAIIRNATIIFATLSASGSKPIRSNF--- 1728

Query: 190  THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225
                 V  DE++ + +    S++            +
Sbjct: 1729 -KANIVLVDESTQSSEP--ASLIPLCIGNIEKLILV 1761


>gi|320580086|gb|EFW94309.1| translation-regulating helicase, putative [Pichia angusta DL-1]
          Length = 1918

 Score = 40.3 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 36/125 (28%), Gaps = 16/125 (12%)

Query: 80   CAISAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTL--WAEVSKWLSMLP 136
              + +  G GKT + A + +W      PG  ++ IA  +  ++  +  W E      +  
Sbjct: 1137 VFVGSPTGSGKT-VVAELAIWHAFNEFPGSKVVYIAPMKALVRERVDDWRE-----RISR 1190

Query: 137  HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
            +     ++                 +    + +    R +   +              V 
Sbjct: 1191 NTKHKVVEMTGDSLPEAREVREADIIITTPEKFDGISRNWQTRKFV-------QDVSLVI 1243

Query: 197  NDEAS 201
             DE  
Sbjct: 1244 MDEIH 1248


>gi|238921297|ref|YP_002934812.1| type I restriction enzyme R protein (HsdR) [Edwardsiella ictaluri
           93-146]
 gi|238870866|gb|ACR70577.1| type I restriction enzyme R protein (HsdR) [Edwardsiella ictaluri
           93-146]
          Length = 1031

 Score = 40.3 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 21/188 (11%), Positives = 54/188 (28%), Gaps = 5/188 (2%)

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICI--ANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           +G GK+    W+  W+    P   ++ +       +   +++  V + +           
Sbjct: 278 QGSGKSLTMVWLAKWIRENVPNSRVLIVTDRTELDEQIESVFMGVDEEIYRTSSGSDLIA 337

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
                +P    + + +     +++    T    +E +            + VF DE    
Sbjct: 338 TLNHPNPWLICSLVHKFGRRSEAEDAAATDDFITELQQSLTKTFRAKGDLFVFVDECH-- 395

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
               +  +    T + P   +I  + T  +         +       Y+ D    +G+  
Sbjct: 396 -RTQSGKLHDAMTAILPEALFIGFTGTPLMKKDKKKSVEVFGPYIHTYKFDEAVADGVVL 454

Query: 264 GFHEGIIS 271
                   
Sbjct: 455 DLRYEARD 462


>gi|158851658|gb|ABW82030.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 47/185 (25%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L+ LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALNGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|326924726|ref|XP_003208576.1| PREDICTED: LOW QUALITY PROTEIN: u5 small nuclear ribonucleoprotein
            200 kDa helicase-like [Meleagris gallopavo]
          Length = 2079

 Score = 40.3 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 20/161 (12%), Positives = 40/161 (24%), Gaps = 15/161 (9%)

Query: 54   WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +Q +F     +     + V NS+  +F   + A  G GKT    + +L ++        +
Sbjct: 1264 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1320

Query: 112  CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             I   E   +        K+   L  +        S              +         
Sbjct: 1321 YITPMEALAEQVFMDWYEKFQERLNKKVVLLTGETSTDLK----------LLGKGNIIIS 1370

Query: 172  TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212
            T   +           +  +      DE           + 
Sbjct: 1371 TPEKWDILSRRWKQRKNVQNVNLFIVDEVHLIGGENGPVLE 1411


>gi|197104450|ref|YP_002129827.1| type I restriction-modification system, R subunit [Phenylobacterium
           zucineum HLK1]
 gi|196477870|gb|ACG77398.1| type I restriction-modification system, R subunit [Phenylobacterium
           zucineum HLK1]
          Length = 815

 Score = 40.3 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 21/195 (10%), Positives = 51/195 (26%), Gaps = 14/195 (7%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST- 104
                P  +Q+  + A         +       +  +    G GKT   A+ ++W +   
Sbjct: 161 GSGKAPRYYQVNAVNAAVEAIAKGRD-------RVLLVMATGTGKTY-TAFQIIWRLWKA 212

Query: 105 RPGMSIICIANSETQLKNTL---WAEVSKWLSMLPHRHWF--EMQSLSLHPSGWYAELLE 159
                I+ +A+    +  T+   +      ++ L  +           +  +    +   
Sbjct: 213 GQKKRILFLADRNILVDQTMVNDFRPFGPAMAKLSTKSKTIERADGTEVDLTLAMDKRRR 272

Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
                +         T  EER   F          +  DE        + +        +
Sbjct: 273 VDTAFEIYLGLYQAITGPEERQKIFKDFSPGFFDLIVIDECHRGSAADDAAWREILEHFS 332

Query: 220 PNRFWIMTSNTRRLN 234
                 +T+  +   
Sbjct: 333 GATQIGLTATPKETT 347


>gi|91218310|ref|ZP_01255255.1| ATP-independent RNA helicase [Psychroflexus torquis ATCC 700755]
 gi|91183519|gb|EAS69917.1| ATP-independent RNA helicase [Psychroflexus torquis ATCC 700755]
          Length = 443

 Score = 40.3 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 14/153 (9%), Positives = 39/153 (25%), Gaps = 17/153 (11%)

Query: 55  QLEFME----AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS-TRPGMS 109
           Q + +      V                   + +  G GKT   +  +L ++    P + 
Sbjct: 8   QEDILRKLNIQVLNPMQEEAIPLIENTTNTILLSPTGTGKTLAFSLPLLTILDPESPDVQ 67

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           ++ +  S          E++  +  +        +  +++       + +  + I     
Sbjct: 68  VLILVPS---------RELAIQIEQVIRTMGSGYKVNAVY---GGRPVSKDKIEIKHNPA 115

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
            +                  T    +  DE   
Sbjct: 116 ILIGTPGRILDHFNSERFSKTSIQTLILDEFDK 148


>gi|329124082|ref|ZP_08252629.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Haemophilus
           aegyptius ATCC 11116]
 gi|327467507|gb|EGF13005.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Haemophilus
           aegyptius ATCC 11116]
          Length = 727

 Score = 40.3 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 81/302 (26%), Gaps = 29/302 (9%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIA 114
           E ++ ++      V           + AG G GKT +    + WLI+       SI+ + 
Sbjct: 6   ELLDGLNDKQREAVAAPLGNR---LVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 62

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            +            S       H+ +          +          +G+      +   
Sbjct: 63  FTNKAAAEMRHRIQSTLAKHAQHQLFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSE 122

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
                     +  HN        DE +  P       +    +               + 
Sbjct: 123 -DQLRLIKRLLKLHN-------FDEKAF-PPKQACWYINNKKDEGLR--------PNDIE 165

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294
            +        ++ ++ YQ        +D       +        +       +F    V+
Sbjct: 166 DFNDRQEREWIKIYQIYQDTCDRAGLVDFAELLIRVYELFEKKPLILQRYQQRFQHILVD 225

Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354
            F   N I+     + +      +++  D      D++ +   RG  IE+I  +      
Sbjct: 226 EFQDTNKIQYK-WIKILAGKTGKVMIVGD-----DDQS-IYGWRGAQIENIQKFLKDFKA 278

Query: 355 ET 356
           ET
Sbjct: 279 ET 280


>gi|320167619|gb|EFW44518.1| RNA helicase [Capsaspora owczarzaki ATCC 30864]
          Length = 2274

 Score = 40.3 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 21/176 (11%), Positives = 43/176 (24%), Gaps = 23/176 (13%)

Query: 45   LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            L  FS  +  Q +    +    H              + A  G GKT + A +  + +  
Sbjct: 1405 LYRFSHFNPIQTQVFHTLYHTDH-----------NVLLGAPTGSGKT-IVAELAAYRVFN 1452

Query: 105  -RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
              P   ++ IA  +  ++  +   + ++   L  R   E+                    
Sbjct: 1453 EYPHTKVVYIAPLKALVRERMDDWLERFQRRLGKRV-VELTGDFTPDLQALHRADVIVTT 1511

Query: 164  IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
             +                             +  DE     D     +    +  N
Sbjct: 1512 PEKWDGISRSWQNRSYV---------KAVSLIIIDEIHLLGDDRGPVLEVIVSRTN 1558


>gi|312069940|ref|XP_003137916.1| type III restriction enzyme [Loa loa]
 gi|307766923|gb|EFO26157.1| type III restriction enzyme [Loa loa]
          Length = 1032

 Score = 40.3 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 61/262 (23%), Gaps = 24/262 (9%)

Query: 22  AECVLSFKNFVMRFFPWGIKG-KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKC 80
           +     +K + M+ F              +   +Q E    V   C              
Sbjct: 259 SRTQEHYKKYRMKAFSDEKLERLEDAESIELRPYQQEL---VATACRG---------VNT 306

Query: 81  AISAGRGIGKTTLNAWMMLWLIST----RPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136
            I A  G GKT + A ++L    T         +  +  +   ++      ++++L    
Sbjct: 307 IICAPTGSGKTVVAAHIILEHFRTMKAADKPSRVAILVPTIPLVEQQCI-MLNRYLRK-- 363

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
              W +  S S             +  +      I        R D     + T      
Sbjct: 364 -TFWVDGMSGSEPVDENGRAPNVLASHVTVFTPQIFINLLRSIRRD--DRLYFTDFSMFI 420

Query: 197 NDEASGTP-DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255
            DE      D     ++      +  +  I+        G         L+         
Sbjct: 421 FDECHHCDGDHPYHVLMRMLHRFDGPKPQIVGLTASLPLGAGRANVEAALDHMMDLCAKL 480

Query: 256 RTVEGIDSGFHEGIISRYGLDS 277
                     H   +  +    
Sbjct: 481 SAHSISTVRKHMENLRYFVKPP 502


>gi|237805399|ref|ZP_04592103.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331026506|gb|EGI06561.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 355

 Score = 40.3 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 50/194 (25%), Gaps = 34/194 (17%)

Query: 82  ISAGR--------GIGKTTLNAWMMLWLISTRPGM------SIICIANSETQLKNTLWAE 127
           + AGR        G GKT   A  +L  ++             + +A +  +L + +   
Sbjct: 3   VLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNSIRALVLAPT-RELADQVHES 61

Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187
           + ++   LP         LS + +     +  Q M +      +                
Sbjct: 62  IRQYAEHLP---------LSTYAAYGGVSINPQMMKLRKGVDVLVATPGRLLDLHRQKAV 112

Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
             +    +  DEA    D+             P    I+     +             ED
Sbjct: 113 KFSQLQTLILDEADRMLDMGFI----------PQVRQIIRQTPHKGERQTLLFSATFTED 162

Query: 248 WKRYQIDTRTVEGI 261
                    T   I
Sbjct: 163 VMNLAKQWTTEPSI 176


>gi|241794222|ref|XP_002414494.1| activating signal cointegrator 1 complex subunit 3, helc1, putative
            [Ixodes scapularis]
 gi|215508705|gb|EEC18159.1| activating signal cointegrator 1 complex subunit 3, helc1, putative
            [Ixodes scapularis]
          Length = 1531

 Score = 40.3 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 18/161 (11%), Positives = 41/161 (25%), Gaps = 21/161 (13%)

Query: 45   LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            L  FS  +  Q +    +               +   + A  G GKT      M  + + 
Sbjct: 901  LYSFSHFNPIQTQIFHTLYHTD-----------YNVLLGAPTGSGKTIAAEIAMFRIFNV 949

Query: 105  RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
             P   ++ IA  +  ++      +  W      +   E +              +  +  
Sbjct: 950  NPSSKVVYIAPLKALVRER----IKDW------KVRLEEKLDKKVAELTGDVTPDFRVIT 999

Query: 165  DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
            ++     T   +           +      +  DE     +
Sbjct: 1000 NAHVIVTTPEKWDGISRSWHTRGYVKDVSLIIIDEIHLLAE 1040


>gi|205320896|gb|ACI03010.1| hypothetical protein V35_56 [uncultured bacterium HHV35]
          Length = 875

 Score = 40.3 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 50/180 (27%), Gaps = 12/180 (6%)

Query: 52  HRWQLEFMEAVDVHCHSNVN--NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
             +Q E +  +      N         +F  A     G GKT + A  +L+L       +
Sbjct: 45  RSYQTEALRYLHYAQSHNEADIRFKHLLFNMA----TGSGKTMVMASAILYLFKEYGYQN 100

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS-----GWYAELLEQSMGI 164
            I   +++  ++ T    ++K  S        E++   +                  + +
Sbjct: 101 YIFFVHTDAIIQKTKENLLNKLSSKYLFAQSIEIEGERIVIEAVDIFPRQPSKNTIYLKL 160

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
            + H         +E   T+        + +  DEA               +       W
Sbjct: 161 STIHKIHDELNSYKENSITYEDL-AEIPLVLLGDEAHHFNAETKAKGKSKTSTEYEELTW 219


>gi|152974577|ref|YP_001374094.1| type III restriction protein res subunit [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023329|gb|ABS21099.1| type III restriction protein res subunit [Bacillus cytotoxicus NVH
           391-98]
          Length = 812

 Score = 40.3 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 54/195 (27%), Gaps = 36/195 (18%)

Query: 40  IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99
               P E    P   Q+  +E ++       N       K  I    G+GKT L A+   
Sbjct: 211 EPTAPYETKIAPRFAQVPALEQLENTLEEGYN-------KAMIVMATGLGKTYLAAFFAK 263

Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159
                     ++ +A+ E  L                  +  E     +           
Sbjct: 264 RF------KRVLFVAHLEEIL------------------NQAEQSFQRVIRDKTTGIYNG 299

Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
           +    +      + +T S +R              +  DE         + +L +F   N
Sbjct: 300 KRKEGEKDVVFASIQTLSRKRH--LENFSPDDFDLIIVDEFHHAAANSYQKVLDYF---N 354

Query: 220 PNRFWIMTSNTRRLN 234
           PN    +T+   R +
Sbjct: 355 PNFLLGITATPDRND 369


>gi|238855614|ref|ZP_04645915.1| ATP-dependent RNA helicase [Lactobacillus jensenii 269-3]
 gi|260665326|ref|ZP_05866174.1| RNA helicase [Lactobacillus jensenii SJ-7A-US]
 gi|282933012|ref|ZP_06338406.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii
           208-1]
 gi|238831758|gb|EEQ24094.1| ATP-dependent RNA helicase [Lactobacillus jensenii 269-3]
 gi|260560830|gb|EEX26806.1| RNA helicase [Lactobacillus jensenii SJ-7A-US]
 gi|281302866|gb|EFA95074.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii
           208-1]
          Length = 452

 Score = 40.3 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 54/213 (25%), Gaps = 27/213 (12%)

Query: 40  IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99
             G    +F +P + Q E +                T     + A  G GKT   A+++ 
Sbjct: 15  QAGLEKINFKKPTKVQAEVI------------PVFLTGKNMLVQAATGSGKTH--AYLIP 60

Query: 100 WLISTRPGMS---IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
            L    P      I+  A S    +      V++ L    +             +G    
Sbjct: 61  ALNEVAPSSQTTQIVITAPSRELAQQLY--NVARQLRDASNLDL-----SISLLAGGSDR 113

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT 216
             + S         I                +  +      DEA  + D+     +    
Sbjct: 114 ERQISKAESKAPQVIVATPGRLLDFAKKRIINLENTKCFIIDEADMSLDLGFLGDIDQVA 173

Query: 217 ELNPNRFWIMTSN---TRRLNGWFYDIFNIPLE 246
              P    I   +     +L+ +       P  
Sbjct: 174 ARMPKTVQIAAFSATIPVKLDNFLRKYMQKPER 206


>gi|225010681|ref|ZP_03701151.1| LAO/AO transport system ATPase [Flavobacteria bacterium MS024-3C]
 gi|225005234|gb|EEG43186.1| LAO/AO transport system ATPase [Flavobacteria bacterium MS024-3C]
          Length = 335

 Score = 40.3 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 65/235 (27%), Gaps = 17/235 (7%)

Query: 63  DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN 122
                   +  NP   +  IS   G+GK+TL   + ++L+     ++++ I  S  Q   
Sbjct: 42  AQELEVAFSKENPNTIRVGISGVPGVGKSTLIEALGMYLVEKGLRLAVLTIDPSSQQSGG 101

Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182
           ++  + ++   +  H+  +   + +    G  A+    S+              +     
Sbjct: 102 SILGDKTRMDQLAAHKSAYIRTTAAASTLGGVAQNTRSSILFCEAAGFDVIIVETVGVGQ 161

Query: 183 TFVGPHNTHGMAVFN------DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
             +  H      +        DE  G    + +                +          
Sbjct: 162 NELEVHEMVDALLLLQLPGAGDEIQGIKRGLLEVADALLINKADGAQAPL-------AKK 214

Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL---GQF 288
               F   +  ++  +        + +   E    +    S    I +    G F
Sbjct: 215 AQQYFKASVHGFRPRKNGW-EPPVLLASAIENRGVKEVWQSIEYFIRLQKKHGDF 268


>gi|163759251|ref|ZP_02166337.1| prophage LambdaW4, terminase large subunit, putative [Hoeflea
           phototrophica DFL-43]
 gi|162283655|gb|EDQ33940.1| prophage LambdaW4, terminase large subunit, putative [Hoeflea
           phototrophica DFL-43]
          Length = 669

 Score = 40.3 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 18/213 (8%), Positives = 45/213 (21%), Gaps = 26/213 (12%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            A+      G TT+        I  R    ++ +  +   L +               + 
Sbjct: 73  IAVRKSAQTGFTTMLLAAAA-YIIDRDPCRVMIVQPTSGALADF-----------NKDKL 120

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
              ++   +  +   ++                  + +    ++     +        DE
Sbjct: 121 TPTLEQSPVLAAKIRSQTSRSGDASTVTSKRFQGGSITLAIANSAADLRSKTVKIALCDE 180

Query: 200 ASGTPDIINKSILGF-FTELNPNRFWIM-------TSNTR-RLNGWFYDIFNIPLEDWKR 250
               PD ++         E     F +         S    +        +    + +  
Sbjct: 181 IDEYPDDLDGQGDPMSMIEARQESFLMSGEWLRAYVSTPTIKSVSRIDAQWERSDKRYWH 240

Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283
                    G    F      +Y         E
Sbjct: 241 MPC-----PGCGEMFKYEFDRKYFRFKAEWPHE 268


>gi|270005385|gb|EFA01833.1| hypothetical protein TcasGA2_TC007435 [Tribolium castaneum]
          Length = 1011

 Score = 40.3 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 70/245 (28%), Gaps = 33/245 (13%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q + +             S       +++A RG GK+     + +         +I   +
Sbjct: 257 QGKALLKFIEAISEKTLRST-----VSLTAARGRGKSAAL-GLSVAAAVAFGYSNIFVTS 310

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            S   L NT +  V K    L ++   +   +      +   ++  ++  D +      +
Sbjct: 311 PSPENL-NTFFEFVFKGFDALEYQEHIDYSLVQSTNPEFNKAIVRVNIFRDHRQTIQYIQ 369

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
               +          +    +  DEA+  P    KS+LG +       F   T N     
Sbjct: 370 PTDSQ--------RLSQAELLVIDEAAAIPLPYVKSMLGPYL-----VFLASTINGYEGT 416

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSG-------------FHEGIISRYGLDSDVAR 281
           G    +  +     +   +   T                      E I  + G D +   
Sbjct: 417 GRSLSLKLLQQLRIQAVPVGANTNAANKKDSGAATGRTLHEVTLDESIRYKPGDDVEAWL 476

Query: 282 IEILG 286
            ++L 
Sbjct: 477 TKLLC 481


>gi|157867656|ref|XP_001682382.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68125835|emb|CAJ03973.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 1061

 Score = 40.3 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 10/125 (8%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
           C ++AGRG GK+     M +     +   +I+C A +   +  TL+    + L  L +R 
Sbjct: 287 CVVTAGRGRGKSAAL-GMTIAGAIAQGYSNIMCTAPTPENV-QTLFEFAIRGLKELGYRE 344

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             + ++L      +    +  ++    +                              DE
Sbjct: 345 RTDFEALQGVSEEFAKCFIRINVFRGHRQTVQFVSAT--------DTAKFAQAELCVIDE 396

Query: 200 ASGTP 204
           A+  P
Sbjct: 397 AAALP 401


>gi|70726359|ref|YP_253273.1| hypothetical protein SH1358 [Staphylococcus haemolyticus JCSC1435]
 gi|68447083|dbj|BAE04667.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 448

 Score = 40.3 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 21/203 (10%), Positives = 52/203 (25%), Gaps = 25/203 (12%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI-STR 105
            F +P   Q   +  +                     +  G GK+      ++  I    
Sbjct: 23  KFDKPTEIQNRIIPRIKKGV------------NLIGQSQTGTGKSHAFLLPLIDKIDVEN 70

Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
                I +A +          E+++ L    +      Q + +       ++ +      
Sbjct: 71  KEPQSIVVAPT---------RELAQQLYQAANHLATFKQGIKVSLFIGGTDIEKDRQRTS 121

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD---IINKSILGFFTELNPNR 222
           ++   +                H      +  DEA    D   I +  ++    + N + 
Sbjct: 122 NQPQLVIGTPTRINDLAQSGHLHAHLASYLIVDEADLMIDLGLIEDVDLIASRLDENSHI 181

Query: 223 FWIMTSNTRRLNGWFYDIFNIPL 245
                +  + L  +     + P 
Sbjct: 182 AVFSATIPKSLQPFLNKYLSNPE 204


>gi|289450361|ref|YP_003475500.1| type III restriction enzyme, res subunit [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289184908|gb|ADC91333.1| type III restriction enzyme, res subunit [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 878

 Score = 40.3 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 56/186 (30%), Gaps = 17/186 (9%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q E  +    +   +    N  I      A  G GKT + A ++L+L +      + 
Sbjct: 37  REYQKEAFQYFVTYFEKDGLRKNKQIHTLFHMA-TGSGKTVMMAGLILYLYTKGYRKFLF 95

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +  +     N L      +L+ L  ++ F      L       ++   S         +
Sbjct: 96  FVNQT-----NILKKTEENFLNTLSSKYLFSDNLSYLGTKIKVKKVDRFSDTALDDDIEL 150

Query: 172 TCRTYSEERPDTFVGPHN--------THGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
              T  +   D +    N           +   +DE+        K      TE +  + 
Sbjct: 151 LFTTTQKLHTDMWFAKENAPTYADFENDKIVFISDESHHINSDTKK---KTSTEEDAEKS 207

Query: 224 WIMTSN 229
           W  T N
Sbjct: 208 WEYTVN 213


>gi|257066575|ref|YP_003152831.1| DEAD/DEAH box helicase domain-containing protein [Anaerococcus
           prevotii DSM 20548]
 gi|256798455|gb|ACV29110.1| DEAD/DEAH box helicase domain protein [Anaerococcus prevotii DSM
           20548]
          Length = 536

 Score = 40.3 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 57/226 (25%), Gaps = 26/226 (11%)

Query: 57  EFMEAVDV-------HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           E + A+D                           +  G GKT   A  ++  I       
Sbjct: 11  EILRAIDDLGYEKPSPIQEESIPHLLEGNDLIGKSQTGSGKTAAFAIPIIENIEANGITQ 70

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
            + +  +  +L   +  E+ K             + + +      + ++ Q   +     
Sbjct: 71  ALILCPT-RELCIQVSKEIEKLYK--------YKKEIKILSVYGGSHIVRQIKSLKKGVE 121

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
            +                       V  DEA    D +           +  +F +  +N
Sbjct: 122 IVVGTPGRLMDLMRRKVLKLDQLKTVVLDEA----DEMFDMGF-----RDDMKFILDRTN 172

Query: 230 TRRLNGWFYDIFNIP-LEDWKRYQIDTRTVEGIDSGFHEGIISRYG 274
             R   +F         E  K YQ +   V+          I +Y 
Sbjct: 173 PNRQTCFFSATMGPEIQEFSKLYQTNPYEVKIKSKEVTVDRIDQYY 218


>gi|262066432|ref|ZP_06026044.1| putative helicase [Fusobacterium periodonticum ATCC 33693]
 gi|291379859|gb|EFE87377.1| putative helicase [Fusobacterium periodonticum ATCC 33693]
          Length = 942

 Score = 40.3 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 64/194 (32%), Gaps = 35/194 (18%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P+  Q++ ++ ++     N         +  + +  G GKT L+A    + +       I
Sbjct: 210 PNSMQVQALKNLEETRKEND--------RALLISATGTGKTYLSA----FDVKQAKAKKI 257

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + +A+     K  L      +  +L ++                 E+ + +  I+ K   
Sbjct: 258 LFVAHR----KVILERSKISYQRILKNKKM---------------EIFDSNFQINDKDEV 298

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
           +     +  +          +   +  DE         +SI  +F    P     +T+  
Sbjct: 299 VFAMVQTLNKEKNLNIFPKDYFDYIIIDEVHHGGAKTYQSIFEYFR---PKFLLGITATP 355

Query: 231 RRLNGW-FYDIFNI 243
            R + +  Y +FN 
Sbjct: 356 ERTDDFNIYKLFNY 369


>gi|224003239|ref|XP_002291291.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220973067|gb|EED91398.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 1115

 Score = 40.3 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 37/135 (27%), Gaps = 14/135 (10%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            +++A RG GK+     + L    +    S++  A     L +     +   L  L ++ 
Sbjct: 313 VSLTAPRGRGKSAAL-GLCLAGAISFGFNSVVVTAPEPENLVSVFQFLIEG-LKALKYQE 370

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC----------RTYSEERPDTFVGPHN 189
            ++      +                     I            +T    +P        
Sbjct: 371 HYDYTIGYNYGMDSNEGNNRGEKAGRDNIKCIVSVEIHGRGTQRQTVRYVKPSDVDKFVG 430

Query: 190 THGMAVFNDEASGTP 204
                V  DEA+  P
Sbjct: 431 AE--LVAVDEAAAIP 443


>gi|167626971|ref|YP_001677471.1| DNA/RNA helicase [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|167596972|gb|ABZ86970.1| DNA/RNA helicase [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 912

 Score = 40.3 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 63/235 (26%), Gaps = 42/235 (17%)

Query: 8   DQKLEQELHE---MLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQ----PHRWQLEFME 60
           D   EQ L E   +   AE          + +           F +    P++ Q + +E
Sbjct: 138 DPTTEQILAEFDYLFAKAEYARDIIQQYSQIYQQISSNILTYRFIETKISPNKVQQDALE 197

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +D       N       K  I +  G GKT L+A    + ++       + I +     
Sbjct: 198 NLDRLRQQGKN-------KSLIISATGTGKTFLSA----FDVAKVKPKRCLFIVHRT--- 243

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
            N        +  ++  +           P+ +                 +     + + 
Sbjct: 244 -NIAIKAKETFEKVIKDKTLGLYTGEVKDPADY-----------------LFATVQTLKN 285

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
           P T           +  DE         K +    +   P     MT+   R + 
Sbjct: 286 PQTLASFETNEFDYIIVDEVHHVEAQSYKKV---LSHFKPKFLLGMTATPERSDN 337


>gi|292654216|ref|YP_003534113.1| helicase [Haloferax volcanii DS2]
 gi|291372864|gb|ADE05091.1| helicase [Haloferax volcanii DS2]
          Length = 734

 Score = 40.3 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 55/207 (26%), Gaps = 18/207 (8%)

Query: 48  FSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107
           + +P+  Q   M  +                   +    G GKT       L        
Sbjct: 22  YDEPYPNQEAAMSGIADAL--------DDERNVLLEGATGTGKTISALVPALSYAREH-D 72

Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE------LLEQS 161
            +++   N   Q++  +    +           F  +S   H    + E           
Sbjct: 73  KTVVITTNVHQQMRQFVEDARAITREEAIRAVVFRGKSSMCHIDVGFQECQTLRDTTRSI 132

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221
           +  +S    ++ +T S                +   DE     D + +   G + E   N
Sbjct: 133 VEKESDKAELSEQTQSLLDGIREGESGAADARSAVTDELDAIDDELAELKEGNYCEHYYN 192

Query: 222 RFWIMTSNTRRLNGWFYDIFNIPLEDW 248
                T NT     W +D    P E +
Sbjct: 193 NL---TRNTDEFFQWLFDDVRTPDEIF 216


>gi|228538220|gb|ACQ44380.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|81966966|sp|Q99D35|POLG_DEN3C RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid
            protein C; AltName: Full=Core protein; Contains: RecName:
            Full=prM; Contains: RecName: Full=Peptide pr; Contains:
            RecName: Full=Small envelope protein M; AltName:
            Full=Matrix protein; Contains: RecName: Full=Envelope
            protein E; Contains: RecName: Full=Non-structural protein
            1; Short=NS1; Contains: RecName: Full=Non-structural
            protein 2A; Short=NS2A; Contains: RecName:
            Full=Non-structural protein 2A-alpha; Short=NS2A-alpha;
            Contains: RecName: Full=Serine protease subunit NS2B;
            AltName: Full=Flavivirin protease NS2B regulatory
            subunit; AltName: Full=Non-structural protein 2B;
            Contains: RecName: Full=Serine protease NS3; AltName:
            Full=Flavivirin protease NS3 catalytic subunit; AltName:
            Full=Non-structural protein 3; Contains: RecName:
            Full=Non-structural protein 4A; Short=NS4A; Contains:
            RecName: Full=Peptide 2k; Contains: RecName:
            Full=Non-structural protein 4B; Short=NS4B; Contains:
            RecName: Full=RNA-directed RNA polymerase NS5; AltName:
            Full=Non-structural protein 5
 gi|12711600|gb|AAK01920.1|AF317645_1 polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|53804974|ref|YP_113170.1| CRISPR-associated helicase Cas3 [Methylococcus capsulatus str.
           Bath]
 gi|53758735|gb|AAU93026.1| CRISPR-associated helicase Cas3 [Methylococcus capsulatus str.
           Bath]
          Length = 732

 Score = 40.3 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 67/237 (28%), Gaps = 20/237 (8%)

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           + A  +          P +F   +    G GKT  +    L          I+      +
Sbjct: 227 LRAQVLAQCRTKAEEAPGLFSLTV--PTGGGKTLSSLAFALEHAVHHGQRRIVYAIPYTS 284

Query: 119 QLKNT--LWAEV--SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            ++ T  ++ E+     +    +       + S   S  +   L  +  +         R
Sbjct: 285 IIEQTADIFREIFGEAVIEHHSNLDPDRETAKSRLMSENWDAPLVVTTNVQLFESLFAAR 344

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF---FTELNPNRFWIMTSN-- 229
           T    +       HN     +  DEA   P      IL      T        + T+   
Sbjct: 345 TSQCRK------LHNLVDSVIVLDEAQLLPPEFLDPILEVLRDLTAHYGVTMVLSTATQP 398

Query: 230 ---TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283
               R+  GW +D      E     ++  R ++ +     + + +     +   RI 
Sbjct: 399 AFKPRQGFGWKFDGLENVREIMADPELLYRDLKRVAVKLPDDLHAPEDWPTLAERIR 455


>gi|302343668|ref|YP_003808197.1| Terminase [Desulfarculus baarsii DSM 2075]
 gi|301640281|gb|ADK85603.1| Terminase [Desulfarculus baarsii DSM 2075]
          Length = 540

 Score = 40.3 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 40/331 (12%), Positives = 73/331 (22%), Gaps = 64/331 (19%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS-- 109
             WQ + ++A+              + K  ++  R  GKT L A + L  +         
Sbjct: 60  RPWQKKIVKALY-----RTRGGRRVVRKALLTLPRKNGKTALAAALALAHLIGPEAEQRG 114

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
            +  A ++    + ++AE+   +  +P              +                  
Sbjct: 115 QVYSAAADRGQASIIFAEMEAVIGAVPEFA-ARCNVQRFRKAIEDDVTGSVYH------- 166

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                             H      V  DE +          L            ++ S 
Sbjct: 167 ---------ALSSDDRKAHGLSPSFVVYDELAQARTRHLFDNLDTGAGARREPLMVVIST 217

Query: 230 TRRLNGWFYDIFN--------------------------IPLEDWKRYQIDTRTVEGIDS 263
             + +   + +                               + W             D 
Sbjct: 218 --QSSDHHHVMSELVEYGRKVLDGVIEDETFLPIIYAAPPDADPWSEEVWRACNPALGDF 275

Query: 264 GFHEGII------SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM-SREAIDDLYA 316
              E +        R      V R   L Q P +    FI     E      +       
Sbjct: 276 RSLEEMRQFAAQAKRIPAKETVFRALYLNQ-PVEVDGRFIAQADWEACRGEVDPEALRGR 334

Query: 317 PLIMGCDIAGEGGDKTVVVFR---RGNIIEH 344
           P   G D+     D T +V      G  +  
Sbjct: 335 PCWAGLDLGST-TDLTALVLYFPEDGGAVLP 364


>gi|221070356|gb|ACL99058.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|30387431|ref|NP_848156.1| hypothetical protein pNAC3_p7 [Bifidobacterium longum]
 gi|30265968|gb|AAM66776.1| unknown [Bifidobacterium longum]
          Length = 1387

 Score = 40.3 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 38/299 (12%), Positives = 70/299 (23%), Gaps = 46/299 (15%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
            +    G GKT +   +  +    R     + IA    +       EV            
Sbjct: 504 VVEGAAGAGKTHMLNAVNDY---CRENGKRLVIATPTQKAALVAGEEVG----------- 549

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT----FVGPHNTHGMAVF 196
                         A             +       S+ R +T               + 
Sbjct: 550 ---TGTGTLMRLLEAYGWRHDETNPEHPWYRVAEGQSDHRGNTYRGVPDEYRLDRDTFLV 606

Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256
            DEA         ++L    E        +  +T +LN           E +    +  R
Sbjct: 607 VDEAGMMDQDQALALLRVADETGARL--TLVGDTMQLNAVGRGGVMQLAERYTGNVVAMR 664

Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILGQF--------PQQEVNNF--IPHNYIEEA- 305
            V       +     R    +      + G+            +      I   ++E   
Sbjct: 665 DVHRFKDPDYAAYTIRLRERTPANAERLAGELFDRGMVRHWDSDEATVNAIAAAWMEHPD 724

Query: 306 ------MSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQ 358
                  +R+A +   A   +  D AG+ GD+       G  I         ++     
Sbjct: 725 TTISTVTNRQADEVNRAIQRLRLD-AGQLGDERCASMIDGQEIHV-----GDIVMTRRN 777


>gi|113476152|ref|YP_722213.1| PhoH-like protein [Trichodesmium erythraeum IMS101]
 gi|110167200|gb|ABG51740.1| PhoH-like protein [Trichodesmium erythraeum IMS101]
          Length = 317

 Score = 40.3 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 48/182 (26%), Gaps = 25/182 (13%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAIS--------AGRGIGKTTLNAWMMLWLISTRP 106
           Q + +                  +  AI            G GKT L A + +  +    
Sbjct: 97  QQDVLAKTRRGLEIRAKTFRQRKYVQAIRRHDMTFCVGPAGTGKTFLGAIIAVKALLDNE 156

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
              +I    +             +    L        Q ++ +    Y  L    +    
Sbjct: 157 YERLILTRPA------------VEAGEKLGFLPGDLQQKINPYLRPLYDALY--ELIEPE 202

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
           K  T+  +   E  P  ++     +   V  DEA  T     K +    T L      I+
Sbjct: 203 KVNTLMEKGVIEVAPLAYMRGRTLNNSFVILDEAQNTTPAQMKMV---LTRLGFRSKMIV 259

Query: 227 TS 228
           T 
Sbjct: 260 TG 261


>gi|326429449|gb|EGD75019.1| hypothetical protein PTSG_07244 [Salpingoeca sp. ATCC 50818]
          Length = 2864

 Score = 40.3 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 19/175 (10%), Positives = 52/175 (29%), Gaps = 12/175 (6%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
           ++    +         +    ++   G+GKT + A +M       P   ++ +A ++   
Sbjct: 24  SIAERSYQFSMTKQCLLKNTLVTLPTGLGKTFIAAVVMYNFYRWYPTGKVVFMAPTK--- 80

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
                  V++ +        F+ + +    +G     L + +    + + +T      + 
Sbjct: 81  -----PLVAQQVQACFRIMGFDREDVCE-MTGNKRPALRKKLWHQKRVFFLTAEVLQNDL 134

Query: 181 PDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
                       + +  DEA     +    +++            I  S T    
Sbjct: 135 RRGSCP--AKAFVCLVADEAHRALGNHAYCNVVEVLCSHTERLRIIGLSATPGDT 187


>gi|293609631|ref|ZP_06691933.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828083|gb|EFF86446.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 247

 Score = 40.3 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 33/134 (24%), Gaps = 3/134 (2%)

Query: 29  KNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGI 88
           K+F     P   K     +++ P   Q   +          V      +    +    G 
Sbjct: 61  KHFAGAMIPERHKNAGFRNYNTPLPGQKNALTQTANFAKKIVK---GEVENLVMVGSTGT 117

Query: 89  GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
           GKT L       L++       I       ++      +       L    +     L L
Sbjct: 118 GKTHLACATARTLLAKGNYARYITSEELAQRIMKAWDKDTKDQSEQLVIYEFTTYDLLIL 177

Query: 149 HPSGWYAELLEQSM 162
              G +       +
Sbjct: 178 DEYGLHDREKRLEL 191


>gi|206603136|gb|EDZ39616.1| Protein of unknown function [Leptospirillum sp. Group II '5-way
           CG']
          Length = 292

 Score = 40.3 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 57/184 (30%), Gaps = 11/184 (5%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRG-IGKTTLNAWMMLWLISTRPGMSIICI 113
           Q E +   +    +    S+P     ++++G+G +GKT + A +      T     ++  
Sbjct: 4   QAEGLRNRESLLAAVEKKSSPPRI-ISVTSGKGGVGKTNVTANLAYAFSETFGKKVLVLD 62

Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173
           A+      + L+    +W         F+ +SLS       A +         +  T   
Sbjct: 63  ADMGLGNMDVLFNLRPRWTLR---DFLFDNRSLSDVLVEGPAGIRILPAASGVEEMTALS 119

Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233
              + +    F          +  D  +G  + +       F   +     ++T      
Sbjct: 120 PEQNLKLISAFDQLEAD-FDILLIDTGAGISENVL-----TFNLASQETLIVVTPEPTSR 173

Query: 234 NGWF 237
              F
Sbjct: 174 TDAF 177


>gi|157418347|gb|ABV54900.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|302669090|ref|YP_003832915.1| helicase [Butyrivibrio proteoclasticus B316]
 gi|302397430|gb|ADL36333.1| helicase [Butyrivibrio proteoclasticus B316]
          Length = 559

 Score = 40.3 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 61/233 (26%), Gaps = 19/233 (8%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
           + +EAV      ++ N      +CA+    G GKT L + +       +   +++ +  +
Sbjct: 4   DILEAVRNRTKEDLKNKLSLFNRCAVPRCTGFGKTWLLSEIA------QEYDTVLYLYPA 57

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
           E          + K         W              A   E    +D  +      T 
Sbjct: 58  E---------IIKKTAMHAIDETWEIEDEDESEAEEKKAIYDELGYELDYHNIRFMTYT- 107

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236
              R D            +  DEA      + K+   +      N   I  + T      
Sbjct: 108 KLARMDKKQIKELPLYSLIIMDEAHRLGGELTKTRALWLMYYQKNSHIIGATATPERMDA 167

Query: 237 FYDIFNIPLEDWKRYQIDTRTV--EGIDSGFHEGIISRYGLDSDVARIEILGQ 287
           F  I          +Q        +GI         +     S      + GQ
Sbjct: 168 FDVIAEFFRG-ICVFQYTLHDAIQDGIIKMPIYIYCTYDIETSFKQAARLTGQ 219


>gi|259496217|gb|ACW82883.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|219120234|ref|XP_002180860.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407576|gb|EEC47512.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1051

 Score = 40.3 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 55/188 (29%), Gaps = 16/188 (8%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q + +      C      S       A++A RG GK+     + L    +    +I   A
Sbjct: 269 QAKALLVFLEACSEKTLKST-----VAMTAARGRGKSA-AMGLCLAGAISLGYSTICVTA 322

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
                L  +++  + + L  L ++   +        SG        ++ +  + +    +
Sbjct: 323 PEPENL-VSVFDFLCRGLKALKYQEHMDYSVTYNSASGREQTKCITAINVH-RSHRQVIQ 380

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
                  D F          V  DEA+  P      +    +  +   F   T N     
Sbjct: 381 YVDPAETDKFTSA-----EIVAIDEAAAIP---LPVVRALMSHPDRLTFLSSTINGYEGT 432

Query: 235 GWFYDIFN 242
           G      +
Sbjct: 433 GRALRGRH 440


>gi|145413592|gb|AAW51409.2| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIIREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
             + +  G+ +            MT+        F        ++ +     +     
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822


>gi|312215389|emb|CBX95341.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1323

 Score = 40.3 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 52/157 (33%), Gaps = 12/157 (7%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              ++   G+GKT + A +ML          I+ +A ++  +   + A     ++ +P  
Sbjct: 367 NLLVALPTGLGKTFIAATIMLNWYRWTVDSQIVFVAPTKPLVAQQVQACFK--IAGIPRS 424

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               +        G     L      + + + +T +T   +    +  P     + +  D
Sbjct: 425 ATTMLT-------GNVQTGLRAEEWKEKRVFFMTPQTLQNDLKSGYADP--KKIVLLVVD 475

Query: 199 EASGTPDIINKS-ILGFFTELNPNRFWIMTSNTRRLN 234
           EA           I+ F    N +   +  + T   N
Sbjct: 476 EAHRATGGYAYVEIVSFLRRFNDSFRVLALTATPGAN 512


>gi|263613171|gb|ACY70767.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEASAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|239840462|gb|ACS32036.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|261196434|ref|XP_002624620.1| ATP-dependent DNA helicase MPH1 [Ajellomyces dermatitidis SLH14081]
 gi|239595865|gb|EEQ78446.1| ATP-dependent DNA helicase MPH1 [Ajellomyces dermatitidis SLH14081]
 gi|239609438|gb|EEQ86425.1| ATP-dependent DNA helicase MPH1 [Ajellomyces dermatitidis ER-3]
 gi|327357011|gb|EGE85868.1| ATP-dependent DNA helicase MPH1 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 1145

 Score = 40.3 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 48/159 (30%), Gaps = 16/159 (10%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              ++   G+GKT + A +ML          II +A ++  +   + A     ++ +P  
Sbjct: 342 NLLVALPTGLGKTFIAATVMLNWFRWTTDAQIIFVAPTKPLVSQQVAACFG--IAGIPRS 399

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT--HGMAVF 196
               +        G     +        + + +T +T      +     H      + + 
Sbjct: 400 QTVMLT-------GSTVPAIRAEEWQSKRVFFMTPQTL----VNDLKSGHADPKRIVLLV 448

Query: 197 NDEASGTPDIINKS-ILGFFTELNPNRFWIMTSNTRRLN 234
            DEA            +    + N +   +  + T    
Sbjct: 449 VDEAHRATGSYAYVEAVKLLQKYNTSFRVLALTATPGST 487


>gi|228541467|gb|ACQ44479.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070216|gb|ACL98990.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|197310720|gb|ACH61715.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|187610219|gb|ACD13423.1| polyprotein [Dengue virus 3]
 gi|204305617|gb|ACH99667.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|187610207|gb|ACD13417.1| polyprotein [Dengue virus 3]
          Length = 3391

 Score = 40.3 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|158851664|gb|ABW82033.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|110431934|gb|ABG73599.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|50347097|gb|AAT75224.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|78222516|ref|YP_384263.1| PhoH-like protein [Geobacter metallireducens GS-15]
 gi|78193771|gb|ABB31538.1| PhoH-like protein [Geobacter metallireducens GS-15]
          Length = 439

 Score = 40.3 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 45/154 (29%), Gaps = 10/154 (6%)

Query: 87  GIGKTTLN-AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
           G GKT L  A  +           ++         ++  +        + P   W +   
Sbjct: 255 GTGKTLLAIAAGLHKTAEENVFNRLLVSRPVFPMGRDLGFLPGDIEEKLAP---WMQPIF 311

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
            ++       E  +        +  +      E  P T++   +     +  DEA     
Sbjct: 312 DNVELLLSGHEAEK---RHSKGYKELMAMGIMEIEPLTYIRGRSIPNQFMIVDEAQNLTP 368

Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
              K+I    T        ++T +  +++  + D
Sbjct: 369 HEIKTI---ITRAGEGTKIVLTGDPYQIDNPYVD 399


>gi|130437|sp|P27915|POLG_DEN3P RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid
            protein C; AltName: Full=Core protein; Contains: RecName:
            Full=prM; Contains: RecName: Full=Peptide pr; Contains:
            RecName: Full=Small envelope protein M; AltName:
            Full=Matrix protein; Contains: RecName: Full=Envelope
            protein E; Contains: RecName: Full=Non-structural protein
            1; Short=NS1; Contains: RecName: Full=Non-structural
            protein 2A; Short=NS2A; Contains: RecName:
            Full=Non-structural protein 2A-alpha; Short=NS2A-alpha;
            Contains: RecName: Full=Serine protease subunit NS2B;
            AltName: Full=Flavivirin protease NS2B regulatory
            subunit; AltName: Full=Non-structural protein 2B;
            Contains: RecName: Full=Serine protease NS3; AltName:
            Full=Flavivirin protease NS3 catalytic subunit; AltName:
            Full=Non-structural protein 3; Contains: RecName:
            Full=Non-structural protein 4A; Short=NS4A; Contains:
            RecName: Full=Peptide 2k; Contains: RecName:
            Full=Non-structural protein 4B; Short=NS4B; Contains:
            RecName: Full=RNA-directed RNA polymerase NS5; AltName:
            Full=Non-structural protein 5
 gi|323469|gb|AAA99437.1| unnamed protein product [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 22/185 (11%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + +  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEAMKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|316983461|gb|ADU76220.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|300675515|gb|ADK26427.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|225691028|gb|ACO06202.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|289209652|ref|YP_003461718.1| type III restriction protein res subunit [Thioalkalivibrio sp.
           K90mix]
 gi|288945283|gb|ADC72982.1| type III restriction protein res subunit [Thioalkalivibrio sp.
           K90mix]
          Length = 1066

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 63/187 (33%), Gaps = 33/187 (17%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-- 108
           P+ +Q E +E +     S ++          + A  G GKT + A+        +     
Sbjct: 336 PYAFQQEILEDIRRERRSGIDRHL-------VIAATGTGKTMIAAFDYRRFAREQADKGR 388

Query: 109 -SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
            S++ IA+ E  L+  +    + +  +L    + ++      PS               +
Sbjct: 389 PSLLFIAHREEILRQAM----ASFRQVLQDHEFGDVLVGGARPSQ-------------DR 431

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
           H   T  +++    D     H  +   V  DEA  +     + I      + P     +T
Sbjct: 432 HLFCTVASWNARDLDRLDPEHFDY---VVLDEAHHSSAGSYQRI---LEHVRPKCLLGLT 485

Query: 228 SNTRRLN 234
           +   R +
Sbjct: 486 ATPERTD 492


>gi|221070429|gb|ACL99092.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070400|gb|ACL99078.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070224|gb|ACL98994.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|209976606|gb|ACJ04219.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|209976536|gb|ACJ04182.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|204305603|gb|ACH99660.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|197310732|gb|ACH61721.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|197310678|gb|ACH61690.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|196015823|ref|XP_002117767.1| hypothetical protein TRIADDRAFT_51100 [Trichoplax adhaerens]
 gi|190579652|gb|EDV19743.1| hypothetical protein TRIADDRAFT_51100 [Trichoplax adhaerens]
          Length = 2140

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 61/255 (23%), Gaps = 40/255 (15%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               + A  G GKT    + +  L++T+     + +   ++  +        +W+     R
Sbjct: 1345 NVFVGAPTGSGKTICAEFAITRLLNTQNDGKCVYVTPFQSLAEKLYI----EWMERFEKR 1400

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                +  L+   S     L   ++ I +           ++R                 D
Sbjct: 1401 LGKTVNILTGEISIDIKRLSTGNIIISTPDKWDILSRRWKQRKAVLK------VNLFLID 1454

Query: 199  EASGTPDIINKSILGFF-------TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY 251
            EA      I  SI           +++      IM S+             +       +
Sbjct: 1455 EAHLIGGEIGPSIEIICSRMRYISSQVEDPIRIIMLSSPIANASDLAQWLGVSSSCLFNF 1514

Query: 252  QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311
              + R                           I G         FI    I    +    
Sbjct: 1515 HPNVRPTPLELH--------------------IQGFHTTHSPTRFIT--MIRPTYNTILK 1552

Query: 312  DDLYAPLIMGCDIAG 326
                 P I+    + 
Sbjct: 1553 YSPSKPCIIYV-PSR 1566


>gi|187610159|gb|ACD13393.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|180165015|gb|ACB87133.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|169635127|gb|ACA58339.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|169635117|gb|ACA58334.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|169143976|gb|ACA48862.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|169143918|gb|ACA48833.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|158851704|gb|ABW82053.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|158851698|gb|ABW82050.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|158851690|gb|ABW82046.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|158851632|gb|ABW82017.1| polyprotein [Dengue virus 3]
 gi|158851634|gb|ABW82018.1| polyprotein [Dengue virus 3]
 gi|158851644|gb|ABW82023.1| polyprotein [Dengue virus 3]
 gi|158851652|gb|ABW82027.1| polyprotein [Dengue virus 3]
 gi|158851654|gb|ABW82028.1| polyprotein [Dengue virus 3]
 gi|158851656|gb|ABW82029.1| polyprotein [Dengue virus 3]
 gi|158851660|gb|ABW82031.1| polyprotein [Dengue virus 3]
 gi|158851662|gb|ABW82032.1| polyprotein [Dengue virus 3]
 gi|158851666|gb|ABW82034.1| polyprotein [Dengue virus 3]
 gi|158851668|gb|ABW82035.1| polyprotein [Dengue virus 3]
 gi|158851672|gb|ABW82037.1| polyprotein [Dengue virus 3]
 gi|158851678|gb|ABW82040.1| polyprotein [Dengue virus 3]
 gi|158851680|gb|ABW82041.1| polyprotein [Dengue virus 3]
 gi|158851682|gb|ABW82042.1| polyprotein [Dengue virus 3]
 gi|158851686|gb|ABW82044.1| polyprotein [Dengue virus 3]
 gi|158851688|gb|ABW82045.1| polyprotein [Dengue virus 3]
 gi|158851696|gb|ABW82049.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|84998946|ref|XP_954194.1| DEAD-box helicase [Theileria annulata]
 gi|65305192|emb|CAI73517.1| DEAD-box helicase, putative [Theileria annulata]
          Length = 1925

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 36/143 (25%), Gaps = 7/143 (4%)

Query: 80   CAISAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              ++A  G GKT L A + L+ +    P    + IA  +             W   L  +
Sbjct: 1149 LVVAAPTGSGKT-LVAELGLFRLFDKHPDKIAVYIAPLKALAHER----FKDWCKKLHFK 1203

Query: 139  HWFEMQSLSLHPSGWYAEL-LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
               ++   +   +        E+           T   +             T    +  
Sbjct: 1204 KILQLTGDTSSNNLDNQLYKFERDELDRYDIVITTPEKWDGISRHWRRKKLVTKVALIIL 1263

Query: 198  DEASGTPDIINKSILGFFTELNP 220
            DE     +     I    +    
Sbjct: 1264 DELHLLGESRGAIIESIISRQYT 1286


>gi|325420568|gb|ADZ13189.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|316983479|gb|ADU76229.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|316983477|gb|ADU76228.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|316983473|gb|ADU76226.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|316983469|gb|ADU76224.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|316983463|gb|ADU76221.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|316983457|gb|ADU76218.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|316983433|gb|ADU76206.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|316983411|gb|ADU76195.1| polyprotein [Dengue virus 3]
 gi|316983455|gb|ADU76217.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|300675555|gb|ADK26445.1| polyprotein [Dengue virus 3]
 gi|316983447|gb|ADU76213.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|300675545|gb|ADK26440.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|300675541|gb|ADK26438.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|300675533|gb|ADK26436.1| polyprotein [Dengue virus 3]
          Length = 3389

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|300675507|gb|ADK26423.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|298388365|gb|ADI80662.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|298388363|gb|ADI80661.1| polyprotein [Dengue virus 3]
 gi|300675503|gb|ADK26421.1| polyprotein [Dengue virus 3]
 gi|300675511|gb|ADK26425.1| polyprotein [Dengue virus 3]
 gi|300675513|gb|ADK26426.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|298388355|gb|ADI80657.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|298388353|gb|ADI80656.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|297623886|ref|YP_003705320.1| CRISPR-associated helicase Cas3 [Truepera radiovictrix DSM 17093]
 gi|297165066|gb|ADI14777.1| CRISPR-associated helicase Cas3 [Truepera radiovictrix DSM 17093]
          Length = 772

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 47/181 (25%), Gaps = 15/181 (8%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
           E    P    +  +               P  F+  +    G GKT  +    L      
Sbjct: 229 EDGKDPQP--INALRREMYASALGNAALPPGFFRLTM--PTGGGKTLTSLAFALEHARQH 284

Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
               +I      T + +       + L     +      +L +       E    +  + 
Sbjct: 285 GLRRVIYAVP-FTTIIDQTAKVFREVLERCDFKVLEHHSNLEVKEPKEGEENQTTAPDLA 343

Query: 166 SKHY----------TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
           ++++           +   T    R       HN  G  +  DEA   P  + +  L   
Sbjct: 344 TENWDAPVIVTTTVRLFQETLFGTRTAQLRRLHNVSGSVIVLDEAQTLPANLLQPTLDAL 403

Query: 216 T 216
           +
Sbjct: 404 S 404


>gi|281324821|gb|ADA60766.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|281324819|gb|ADA60765.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|281324815|gb|ADA60763.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|263613522|gb|ACY70777.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|263613379|gb|ACY70773.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|263613346|gb|ACY70772.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|263613097|gb|ACY70765.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|263612343|gb|ACY70743.1| polyprotein [Dengue virus 3]
 gi|263612751|gb|ACY70755.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|259500459|gb|ACW83006.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|259500457|gb|ACW83005.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|259500453|gb|ACW83003.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|259500451|gb|ACW83002.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|259500449|gb|ACW83001.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|259500447|gb|ACW83000.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|259500445|gb|ACW82999.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|259496321|gb|ACW82935.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|259496203|gb|ACW82876.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|254939504|gb|AAB69126.2| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|239840470|gb|ACS32040.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|239840454|gb|ACS32032.1| polyprotein [Dengue virus 3]
 gi|281324813|gb|ADA60762.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|239840448|gb|ACS32029.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|239840398|gb|ACS32004.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|239840388|gb|ACS31999.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|239840386|gb|ACS31998.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|239840384|gb|ACS31997.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|239840382|gb|ACS31996.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|239840380|gb|ACS31995.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|228543174|gb|ACQ44530.1| polyprotein [Dengue virus 3]
 gi|239840378|gb|ACS31994.1| polyprotein [Dengue virus 3]
 gi|298388357|gb|ADI80658.1| polyprotein [Dengue virus 3]
 gi|298388361|gb|ADI80660.1| polyprotein [Dengue virus 3]
 gi|300675525|gb|ADK26432.1| polyprotein [Dengue virus 3]
 gi|300675547|gb|ADK26441.1| polyprotein [Dengue virus 3]
 gi|300675549|gb|ADK26442.1| polyprotein [Dengue virus 3]
 gi|300675557|gb|ADK26446.1| polyprotein [Dengue virus 3]
 gi|310002702|gb|ADO97106.1| polyprotein [Dengue virus 3]
 gi|310002704|gb|ADO97107.1| polyprotein [Dengue virus 3]
 gi|310002706|gb|ADO97108.1| polyprotein [Dengue virus 3]
 gi|310002708|gb|ADO97109.1| polyprotein [Dengue virus 3]
 gi|316983431|gb|ADU76205.1| polyprotein [Dengue virus 3]
 gi|316983453|gb|ADU76216.1| polyprotein [Dengue virus 3]
 gi|316983467|gb|ADU76223.1| polyprotein [Dengue virus 3]
 gi|316983471|gb|ADU76225.1| polyprotein [Dengue virus 3]
 gi|316983475|gb|ADU76227.1| polyprotein [Dengue virus 3]
 gi|316983483|gb|ADU76231.1| polyprotein [Dengue virus 3]
 gi|316983485|gb|ADU76232.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|228543145|gb|ACQ44529.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|228542631|gb|ACQ44513.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|228542539|gb|ACQ44510.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|228542510|gb|ACQ44509.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|228542482|gb|ACQ44508.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|228542456|gb|ACQ44507.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|228542259|gb|ACQ44503.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|228542226|gb|ACQ44502.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|228542195|gb|ACQ44501.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|228542062|gb|ACQ44498.1| polyprotein [Dengue virus 3]
 gi|259496323|gb|ACW82936.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|228542016|gb|ACQ44497.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|228541988|gb|ACQ44496.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|228541662|gb|ACQ44485.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|228541597|gb|ACQ44483.1| polyprotein [Dengue virus 3]
 gi|259500455|gb|ACW83004.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|228541565|gb|ACQ44482.1| polyprotein [Dengue virus 3]
 gi|281324817|gb|ADA60764.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|228541534|gb|ACQ44481.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|228541501|gb|ACQ44480.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|228538467|gb|ACQ44387.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|228538430|gb|ACQ44386.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|228538395|gb|ACQ44385.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|228538361|gb|ACQ44384.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|228538328|gb|ACQ44383.1| polyprotein [Dengue virus 3]
 gi|239840446|gb|ACS32028.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|228538287|gb|ACQ44382.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|228535530|gb|ACQ44322.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|228535528|gb|ACQ44321.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|225691054|gb|ACO06215.1| polyprotein [Dengue virus 3]
 gi|259496175|gb|ACW82862.1| polyprotein [Dengue virus 3]
 gi|259496177|gb|ACW82863.1| polyprotein [Dengue virus 3]
 gi|259496205|gb|ACW82877.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|225691052|gb|ACO06214.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|225691050|gb|ACO06213.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|225691024|gb|ACO06200.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|225690994|gb|ACO06185.1| polyprotein [Dengue virus 3]
 gi|316983419|gb|ADU76199.1| polyprotein [Dengue virus 3]
 gi|316983423|gb|ADU76201.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|225690992|gb|ACO06184.1| polyprotein [Dengue virus 3]
 gi|239840400|gb|ACS32005.1| polyprotein [Dengue virus 3]
 gi|316983421|gb|ADU76200.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|225690972|gb|ACO06174.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|225690968|gb|ACO06172.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|225690962|gb|ACO06169.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|225690942|gb|ACO06159.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|225690902|gb|ACO06139.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|187479900|gb|AAV36569.2| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070475|gb|ACL99113.1| polyprotein [Dengue virus 3]
 gi|221070477|gb|ACL99114.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070472|gb|ACL99112.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070454|gb|ACL99104.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070439|gb|ACL99097.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070433|gb|ACL99094.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070427|gb|ACL99091.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070424|gb|ACL99090.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070420|gb|ACL99088.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070418|gb|ACL99087.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070416|gb|ACL99086.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070414|gb|ACL99085.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070408|gb|ACL99082.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070404|gb|ACL99080.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070402|gb|ACL99079.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070398|gb|ACL99077.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070396|gb|ACL99076.1| polyprotein [Dengue virus 3]
 gi|228542572|gb|ACQ44511.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070391|gb|ACL99074.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070389|gb|ACL99073.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070387|gb|ACL99072.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070380|gb|ACL99069.1| polyprotein [Dengue virus 3]
 gi|221070385|gb|ACL99071.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070378|gb|ACL99068.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070376|gb|ACL99067.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070374|gb|ACL99066.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070371|gb|ACL99065.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070369|gb|ACL99064.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070365|gb|ACL99062.1| polyprotein [Dengue virus 3]
 gi|221070367|gb|ACL99063.1| polyprotein [Dengue virus 3]
 gi|228542605|gb|ACQ44512.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070362|gb|ACL99061.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070353|gb|ACL99057.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070349|gb|ACL99055.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070347|gb|ACL99054.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070345|gb|ACL99053.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070343|gb|ACL99052.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070339|gb|ACL99050.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070337|gb|ACL99049.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070335|gb|ACL99048.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070329|gb|ACL99045.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070327|gb|ACL99044.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070321|gb|ACL99041.1| polyprotein [Dengue virus 3]
 gi|221070323|gb|ACL99042.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070304|gb|ACL99033.1| polyprotein [Dengue virus 3]
 gi|221070306|gb|ACL99034.1| polyprotein [Dengue virus 3]
 gi|221070310|gb|ACL99036.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070264|gb|ACL99014.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070238|gb|ACL99001.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070236|gb|ACL99000.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070234|gb|ACL98999.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070232|gb|ACL98998.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070230|gb|ACL98997.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070228|gb|ACL98996.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070226|gb|ACL98995.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070222|gb|ACL98993.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070220|gb|ACL98992.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070218|gb|ACL98991.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070214|gb|ACL98989.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070212|gb|ACL98988.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070210|gb|ACL98987.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070206|gb|ACL98985.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|217302387|gb|ACK28187.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|157061325|gb|ABV03585.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|209976604|gb|ACJ04218.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|209976550|gb|ACJ04189.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|209976548|gb|ACJ04188.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|209976542|gb|ACJ04185.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|209976538|gb|ACJ04183.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|209976532|gb|ACJ04180.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|209976530|gb|ACJ04179.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|209976528|gb|ACJ04178.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|204305634|gb|ACH99677.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|204305632|gb|ACH99676.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|204305621|gb|ACH99669.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|204305615|gb|ACH99666.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|204305607|gb|ACH99662.1| polyprotein [Dengue virus 3]
 gi|221070325|gb|ACL99043.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|204305599|gb|ACH99658.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|204305597|gb|ACH99657.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|204305593|gb|ACH99655.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|204305591|gb|ACH99654.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|204305587|gb|ACH99652.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|197310730|gb|ACH61720.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|197310726|gb|ACH61718.1| polyprotein [Dengue virus 3]
 gi|197310728|gb|ACH61719.1| polyprotein [Dengue virus 3]
 gi|204305589|gb|ACH99653.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|197310722|gb|ACH61716.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|197310666|gb|ACH61684.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|197310664|gb|ACH61683.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|195471459|ref|XP_002088022.1| GE18344 [Drosophila yakuba]
 gi|194174123|gb|EDW87734.1| GE18344 [Drosophila yakuba]
          Length = 429

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 25/204 (12%), Positives = 52/204 (25%), Gaps = 9/204 (4%)

Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182
            LW E    L ++     F      +  +   AEL   ++              S +   
Sbjct: 59  RLWHEAKDELHLMLSPGAFGELETEMRKTNVTAELFISNVQELIDSEEAANLKASRDGSF 118

Query: 183 TFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242
            +   ++   +  + DE       + +S     +        I  S      G   +   
Sbjct: 119 GWTKYNSLAEIYAWLDEILAAYPSVTESFEVGQSYEGRTIRGIKISYKSNNPGVLIESNI 178

Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302
              E            E + S   + ++     + D   + +L             H   
Sbjct: 179 HAREWITSATATWLINEFLTST--DELVRDLAENHDWYIVPVL-----NVDGLVYTHE-- 229

Query: 303 EEAMSREAIDDLYAPLIMGCDIAG 326
           ++ M R+          +G D   
Sbjct: 230 KDRMWRKTRQPSDISSCIGVDPNR 253


>gi|190161853|gb|ACE63545.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|190161851|gb|ACE63544.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|190161831|gb|ACE63534.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|190161827|gb|ACE63532.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|190161821|gb|ACE63529.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|190161819|gb|ACE63528.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|187610209|gb|ACD13418.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|187610193|gb|ACD13410.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|187610183|gb|ACD13405.1| polyprotein [Dengue virus 3]
 gi|209976546|gb|ACJ04187.1| polyprotein [Dengue virus 3]
 gi|209976608|gb|ACJ04220.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|187610179|gb|ACD13403.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|187610177|gb|ACD13402.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|187610161|gb|ACD13394.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|187610157|gb|ACD13392.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|180165050|gb|ACB87134.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|170665952|gb|ACB29499.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|170665950|gb|ACB29498.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|170665948|gb|ACB29497.1| polyprotein [Dengue virus 3]
 gi|187610039|gb|ACD13331.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|170665946|gb|ACB29496.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|169635133|gb|ACA58342.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|169635129|gb|ACA58340.1| polyprotein [Dengue virus 3]
 gi|169635131|gb|ACA58341.1| polyprotein [Dengue virus 3]
 gi|225690912|gb|ACO06144.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|169635121|gb|ACA58336.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|169635119|gb|ACA58335.1| polyprotein [Dengue virus 3]
 gi|204305585|gb|ACH99651.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|169635105|gb|ACA58328.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|169635103|gb|ACA58327.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|169635099|gb|ACA58325.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|169635095|gb|ACA58323.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|169635093|gb|ACA58322.1| polyprotein [Dengue virus 3]
 gi|221070312|gb|ACL99037.1| polyprotein [Dengue virus 3]
 gi|221070314|gb|ACL99038.1| polyprotein [Dengue virus 3]
 gi|221070316|gb|ACL99039.1| polyprotein [Dengue virus 3]
 gi|221070318|gb|ACL99040.1| polyprotein [Dengue virus 3]
 gi|221070333|gb|ACL99047.1| polyprotein [Dengue virus 3]
 gi|224383588|gb|ACN42696.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|169635091|gb|ACA58321.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|169635089|gb|ACA58320.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|169144014|gb|ACA48881.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|169144012|gb|ACA48880.1| polyprotein [Dengue virus 3]
 gi|169635101|gb|ACA58326.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|169144010|gb|ACA48879.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|169143978|gb|ACA48863.1| polyprotein [Dengue virus 3]
 gi|221070208|gb|ACL98986.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|169143912|gb|ACA48830.1| polyprotein [Dengue virus 3]
 gi|204305595|gb|ACH99656.1| polyprotein [Dengue virus 3]
 gi|204305613|gb|ACH99665.1| polyprotein [Dengue virus 3]
 gi|204305619|gb|ACH99668.1| polyprotein [Dengue virus 3]
 gi|225690910|gb|ACO06143.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|169143902|gb|ACA48825.1| polyprotein [Dengue virus 3]
 gi|169143904|gb|ACA48826.1| polyprotein [Dengue virus 3]
 gi|190161825|gb|ACE63531.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|169143896|gb|ACA48822.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|158851720|gb|ABW82061.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|158851706|gb|ABW82054.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|158851700|gb|ABW82051.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|158851692|gb|ABW82047.1| polyprotein [Dengue virus 3]
 gi|158851694|gb|ABW82048.1| polyprotein [Dengue virus 3]
 gi|158851708|gb|ABW82055.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|158851676|gb|ABW82039.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|158851674|gb|ABW82038.1| polyprotein [Dengue virus 3]
 gi|158851684|gb|ABW82043.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|158851648|gb|ABW82025.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|158851646|gb|ABW82024.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|158851640|gb|ABW82021.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|158851638|gb|ABW82020.1| polyprotein [Dengue virus 3]
 gi|158851642|gb|ABW82022.1| polyprotein [Dengue virus 3]
 gi|158851650|gb|ABW82026.1| polyprotein [Dengue virus 3]
 gi|158851670|gb|ABW82036.1| polyprotein [Dengue virus 3]
 gi|158851718|gb|ABW82060.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|158851636|gb|ABW82019.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|157418345|gb|ABV54899.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|157418341|gb|ABV54897.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|157418339|gb|ABV54896.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|165972365|ref|NP_001107132.1| Fanconi anemia, complementation group M [Danio rerio]
 gi|126843130|gb|ABO27624.1| Fanconi anemia M [Danio rerio]
          Length = 1761

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 52/238 (21%), Gaps = 43/238 (18%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +QL   EA               +    +    G+GKT + + +M       P   I+
Sbjct: 78  REYQLRVCEA-------------ALLQNTLVCLPTGLGKTFIASVLMYNYYRWFPAGKIV 124

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +A ++  +      ++     ++        +      +     L        S+    
Sbjct: 125 FMAPTKPLVAQ----QIEACYRVMGIPQEHTAELTGSTAAPQRRSLW------SSRRVFF 174

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
                     D        H       E            L      +      + SN  
Sbjct: 175 LTPPDRCVVIDEAHKATGNHAYCQVIRELRKQTPQFRVLALSATPGGDVKAVQQVISN-- 232

Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF----HEGIISRYGLDSDVARIEIL 285
                               ++ +     + +       E ++   G      +   L
Sbjct: 233 --------------LLISHIELRSEDSPDVQTHVHQRSLEKMVVPLGESLTHYQTRYL 276


>gi|89274866|gb|ABD65878.1| polyprotein [Dengue virus 3]
 gi|89274868|gb|ABD65879.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|50657546|gb|AAT79552.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|163644369|ref|YP_001621843.1| polyprotein [Dengue virus 3]
 gi|81988680|sp|Q6YMS4|POLG_DEN3S RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid
            protein C; AltName: Full=Core protein; Contains: RecName:
            Full=prM; Contains: RecName: Full=Peptide pr; Contains:
            RecName: Full=Small envelope protein M; AltName:
            Full=Matrix protein; Contains: RecName: Full=Envelope
            protein E; Contains: RecName: Full=Non-structural protein
            1; Short=NS1; Contains: RecName: Full=Non-structural
            protein 2A; Short=NS2A; Contains: RecName:
            Full=Non-structural protein 2A-alpha; Short=NS2A-alpha;
            Contains: RecName: Full=Serine protease subunit NS2B;
            AltName: Full=Flavivirin protease NS2B regulatory
            subunit; AltName: Full=Non-structural protein 2B;
            Contains: RecName: Full=Serine protease NS3; AltName:
            Full=Flavivirin protease NS3 catalytic subunit; AltName:
            Full=Non-structural protein 3; Contains: RecName:
            Full=Non-structural protein 4A; Short=NS4A; Contains:
            RecName: Full=Peptide 2k; Contains: RecName:
            Full=Non-structural protein 4B; Short=NS4B; Contains:
            RecName: Full=RNA-directed RNA polymerase NS5; AltName:
            Full=Non-structural protein 5
 gi|37543956|gb|AAM51537.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|50080846|gb|AAT69740.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|329936128|ref|ZP_08285927.1| helicase-like protein [Streptomyces griseoaurantiacus M045]
 gi|329304446|gb|EGG48325.1| helicase-like protein [Streptomyces griseoaurantiacus M045]
          Length = 1056

 Score = 40.3 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 39/173 (22%), Gaps = 28/173 (16%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q            +  +       +  I +  G GKT   A   L      PG  ++   
Sbjct: 18  QKARFREWAGSPFNTRSPVPEQGSRGTIVSATGSGKTITAAACAL---ECFPGARVLVTV 74

Query: 115 NSETQLKNTLWA----------------EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
            +   L  T  A                E    L+ L  R       L+L        + 
Sbjct: 75  PTLDLLVQTAQAWRLVGHRSPMVAVCSLENDAVLNSLGVRTTTNPIQLALWAGHGPVVVF 134

Query: 159 EQSMGIDSKHYTITCRTYSEER---------PDTFVGPHNTHGMAVFNDEASG 202
                +  +          + R          +   G           DEA G
Sbjct: 135 ATYASLVDREDIDAPEGQRKVRGPLEAALAGGERLYGQRMAGFDLAIVDEAHG 187


>gi|322490223|emb|CBZ25484.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 1062

 Score = 40.3 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 44/125 (35%), Gaps = 10/125 (8%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
           C ++AGRG GK+     M +     +   +I+C A +   +  TL+    + L  L +R 
Sbjct: 287 CVVTAGRGRGKSAAL-GMTIAGAIAQGYSNIMCTAPTPENV-QTLFEFAIRGLKELGYRE 344

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             + ++L      +    +  ++  + +            +                 DE
Sbjct: 345 RTDFEALQGVSEEFAKCFIRINVFREHRQTVQFVSATDTTK--------FAQAELCVIDE 396

Query: 200 ASGTP 204
           A+  P
Sbjct: 397 AAALP 401


>gi|301120732|ref|XP_002908093.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262103124|gb|EEY61176.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 564

 Score = 40.3 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 37/316 (11%), Positives = 77/316 (24%), Gaps = 59/316 (18%)

Query: 81  AISAGR--------GIGKTTLNAWMMLWLI-------STRPGMSIICIANSETQLKNTLW 125
            +++GR        G GKT   +   L  I          PG  ++ +A +      +  
Sbjct: 181 ILASGRDIIGIAETGSGKTLAFSIPGLIHIAAQPEVSHKHPGPRMLVVAPTRELAMQSS- 239

Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185
           A +S+       +       +  H                   + +       +      
Sbjct: 240 AVISEAGKKCGLKSICIYGGVPKHTQKKALRD---------GVHVVVATPGRLKDLVEER 290

Query: 186 GPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL 245
             + +    V  DEA    D   +  +            I   +                
Sbjct: 291 SCNLSKVTFVVLDEADRMLDEGFEKDIRAIIGSTHPERQIAMFSATWPQSIQKLAHEFLN 350

Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV-----------ARIEILGQFPQQEVN 294
           +  K            +      ++     DS                 +L    ++E +
Sbjct: 351 DPVKVTIGSDELAASHNVTQIVEVVEDRARDSRAHALLQKYHASRKNRILLFVLYKKEAD 410

Query: 295 NF-----------IPHNYIEEAMSREAIDDLYA----PLIMGCDIAGEGGDKTVVVFRRG 339
                        I  +       R    + +     PL++  D+A  G D         
Sbjct: 411 RVERMLHQRGWNCIAIHGDRNQQQRSEAVEQFKSGEVPLLIATDVAARGLD--------I 462

Query: 340 NIIEHIFDWSAKLIQE 355
             +E++ ++S  L  E
Sbjct: 463 PGVEYVMNYSFPLTIE 478


>gi|115949446|ref|XP_001194731.1| PREDICTED: similar to RNA helicase [Strongylocentrotus purpuratus]
          Length = 1419

 Score = 40.3 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 24/221 (10%), Positives = 56/221 (25%), Gaps = 29/221 (13%)

Query: 45   LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            +  F + +R+Q      +     SN            I A  G+GK+      +L     
Sbjct: 869  MFSFDEFNRFQKVVFNKLYTETDSN----------VLIGAPGGMGKSVATELAILGAFRA 918

Query: 105  RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
            RP   ++ IA   + L+       +++  +L  +  F +                     
Sbjct: 919  RPDTKVVYIAPLRSLLRRRFRVWRARFGDILGKKV-FMLNGDVSSDVNTVKRADIILATS 977

Query: 165  DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT------EL 218
            +             +  +            +  D+          ++    T        
Sbjct: 978  EKWDAVC----RRGQNTED--------VSLLVLDQLQFLASDCGPALEAIVTRMKITSRS 1025

Query: 219  NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
                  +  S     +    +  ++       ++ D R V 
Sbjct: 1026 TSKVRIVALSTPMSNSIEVAEWLDVKEVGSYNFKADERPVP 1066


>gi|115730743|ref|XP_795220.2| PREDICTED: similar to RNA helicase, partial [Strongylocentrotus
            purpuratus]
          Length = 1398

 Score = 40.3 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 24/221 (10%), Positives = 56/221 (25%), Gaps = 29/221 (13%)

Query: 45   LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            +  F + +R+Q      +     SN            I A  G+GK+      +L     
Sbjct: 869  MFSFDEFNRFQKVVFNKLYTETDSN----------VLIGAPGGMGKSVATELAILGAFRA 918

Query: 105  RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
            RP   ++ IA   + L+       +++  +L  +  F +                     
Sbjct: 919  RPDTKVVYIAPLRSLLRRRFRVWRARFGDILGKKV-FMLNGDVSSDVNTVKRADIILATS 977

Query: 165  DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT------EL 218
            +             +  +            +  D+          ++    T        
Sbjct: 978  EKWDAVC----RRGQNTED--------VSLLVLDQLQFLASDCGPALEAIVTRMKITSRS 1025

Query: 219  NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
                  +  S     +    +  ++       ++ D R V 
Sbjct: 1026 TSKVRIVALSTPMSNSIEVAEWLDVKEVGSYNFKADERPVP 1066


>gi|83571766|ref|YP_425018.1| putative large terminase subunit [Enterobacteria phage K1E]
 gi|83308217|emb|CAJ29449.1| gp40A protein [Enterobacteria phage K1E]
          Length = 405

 Score = 40.3 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 72/246 (29%), Gaps = 19/246 (7%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
                ++  I A RGI KTTL+A   ++ I   P   I+ ++ +  + +     E++ W+
Sbjct: 62  FYGHKYRL-IEAPRGIAKTTLSAIYTVFRIIHEPHKRIMVVSQNAKRAE-----EIAGWV 115

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
             +     F    L    +G  A +    +    +    +             G      
Sbjct: 116 VKIFRGLDFLEFMLPDIYAGDRASVKAFEIHYTLRGSDKSPSVSCYSIEAGMQGARADII 175

Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFW----IMTSNTRRLNGWFYDIFNIPLE-D 247
           +A   +          +++L   T+   +       I     + +N  + ++        
Sbjct: 176 LADDVESMQNARTAAGRALLEELTKEFESINQFGDIIYLGTPQNVNSIYNNLPARGYSVR 235

Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL--------GQFPQQEVNNFIPH 299
               +  +   E     F   +I +   D+   R                  + +  I  
Sbjct: 236 IWTARYPSVEQEQCYGDFLAPMIVQDMKDNPALRSGYGLDGNSGAPCAPEMYDDDVLIEK 295

Query: 300 NYIEEA 305
              + A
Sbjct: 296 EISQGA 301


>gi|260592885|ref|ZP_05858343.1| type I restriction-modification system, R subunit [Prevotella
           veroralis F0319]
 gi|260535174|gb|EEX17791.1| type I restriction-modification system, R subunit [Prevotella
           veroralis F0319]
          Length = 770

 Score = 40.3 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 45/310 (14%), Positives = 97/310 (31%), Gaps = 49/310 (15%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
           +  +P  +Q   +E          +       +  I    G GKT     ++  L ++  
Sbjct: 164 YTYEPRYYQRIAVERTVEAIAKGRD-------RVLIVMATGTGKTITAFQIIHRLKASGT 216

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
              I+ +A+    +  T+  +        P +        +   S +   +      + +
Sbjct: 217 KKKILYLADRNILIDQTMVQDFK------PFKKVMTKIQGATIDSAYEVHMALYHQLVSN 270

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA---SGTPDIINKSILGFFTELNPNRF 223
           +          E   D F     T    +  DE    S   D   + +L +F+       
Sbjct: 271 E----------EGVEDPFKQVQPTFFDLIIVDECHRGSAKDDSAWRKVLEYFSTATQ--- 317

Query: 224 WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283
             MT+  +  NG                 +D            +GI      D  +A   
Sbjct: 318 IGMTATPKAENG--------------ANNLDYFGEPVFTYSLLQGI-----QDGFLAPYR 358

Query: 284 ILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIE 343
           +   +   ++  F P +  ++ + R+ +  LY    +G DIA     + +V  R   +++
Sbjct: 359 VTNSYISIDLQGFKPSDDEKDLLGRDIVQRLYERKDIGRDIAFTKR-REIVAKRITKMLK 417

Query: 344 HIFDWSAKLI 353
            I   +  ++
Sbjct: 418 QIGRMTKTIV 427


>gi|254496379|ref|ZP_05109261.1| CRISPR-associated helicase Cas3 [Legionella drancourtii LLAP12]
 gi|254354397|gb|EET13050.1| CRISPR-associated helicase Cas3 [Legionella drancourtii LLAP12]
          Length = 814

 Score = 40.3 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 60/245 (24%), Gaps = 19/245 (7%)

Query: 63  DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN------- 115
                +  + +  +     ++   G GKT  +    L          II           
Sbjct: 313 AEILQNCRDAALTSSKIYTLTVPTGGGKTLSSMAFALEHALKHNKRRIIVAIPYTSIIEQ 372

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
           +  Q +      V +  S L            L    W A ++  +     +        
Sbjct: 373 TADQYRKVFGNAVIEHHSNLDPEKETAKS--RLSSENWDAPIIVTTNVQLLESLF----- 425

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK---SILGFFTELNPNRFWIMTSNTRR 232
                       HN     +  DEA   P    +    +L   T        + T+    
Sbjct: 426 --AAHTSRCRKLHNLVNSVIIIDEAQLLPPQFLQPVLDVLRLLTTHYGVTLVLSTATQPA 483

Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292
           L+       +  L  +       + V  +        I +    ++    E L Q   + 
Sbjct: 484 LSTIKNSFGHTVLRGFTDVHEIIKDVPALYRQLVRVKIEKPTNLNERVSWESLSQRLCEH 543

Query: 293 VNNFI 297
            +  +
Sbjct: 544 ESVLV 548


>gi|242036511|ref|XP_002465650.1| hypothetical protein SORBIDRAFT_01g042980 [Sorghum bicolor]
 gi|241919504|gb|EER92648.1| hypothetical protein SORBIDRAFT_01g042980 [Sorghum bicolor]
          Length = 2084

 Score = 40.3 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 48/157 (30%), Gaps = 21/157 (13%)

Query: 45   LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            L  FS  +  Q +    +    +              + A  G GKT      ML L +T
Sbjct: 1278 LYRFSHFNPIQTQAFHVLYHTDN-----------NVLLGAPTGSGKTISAELAMLHLFNT 1326

Query: 105  RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
             P M ++ IA  +  ++  +    + W   L  +    +    +  +G +   L   +  
Sbjct: 1327 HPDMKVVYIAPLKAIVRERM----NDWRKRLVTQ----LGKKMVEMTGDFTPDLMALLSA 1378

Query: 165  DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
            D      T   +     +     +      +  DE  
Sbjct: 1379 D--IIISTPEKWDGISRNWHSRSYVMKVGLMILDEIH 1413


>gi|239840450|gb|ACS32030.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|228538252|gb|ACQ44381.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|225690956|gb|ACO06166.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|225690950|gb|ACO06163.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|225690944|gb|ACO06160.1| polyprotein [Dengue virus 3]
 gi|228541693|gb|ACQ44486.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070452|gb|ACL99103.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|260792384|ref|XP_002591195.1| hypothetical protein BRAFLDRAFT_105397 [Branchiostoma floridae]
 gi|229276398|gb|EEN47206.1| hypothetical protein BRAFLDRAFT_105397 [Branchiostoma floridae]
          Length = 757

 Score = 40.3 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 17/170 (10%), Positives = 45/170 (26%), Gaps = 28/170 (16%)

Query: 85  GRGIGKTTLNAWMMLWLISTRP--GMSIICIANSETQLKNTLWAEVSKWLSMLPHRH--- 139
            R  GK++  + ++  ++   P  G+  +  A++ + +              L   +   
Sbjct: 78  PRRCGKSSFFSTILTLILVACPYAGLKALYTAHTLSLVSEMYRRIADNITRPLEAFNAYQ 137

Query: 140 ------------------WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC-----RTY 176
                              F  ++ +   +  +   +E     D     +        T 
Sbjct: 138 LHQYQMRKERNGGISTSGDFYFKAEARLQTHGHIIRVEFFKKNDDGVLKLPGDKMLVNTL 197

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
             +               V  DEA   P  + ++ L +    +     + 
Sbjct: 198 DCKLCIRTNSLRGLTFNMVIVDEAHFVPGNVYETFLPWTATDDGAMIMLS 247


>gi|157418343|gb|ABV54898.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|81988679|sp|Q6YMS3|POLG_DEN3M RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid
            protein C; AltName: Full=Core protein; Contains: RecName:
            Full=prM; Contains: RecName: Full=Peptide pr; Contains:
            RecName: Full=Small envelope protein M; AltName:
            Full=Matrix protein; Contains: RecName: Full=Envelope
            protein E; Contains: RecName: Full=Non-structural protein
            1; Short=NS1; Contains: RecName: Full=Non-structural
            protein 2A; Short=NS2A; Contains: RecName:
            Full=Non-structural protein 2A-alpha; Short=NS2A-alpha;
            Contains: RecName: Full=Serine protease subunit NS2B;
            AltName: Full=Flavivirin protease NS2B regulatory
            subunit; AltName: Full=Non-structural protein 2B;
            Contains: RecName: Full=Serine protease NS3; AltName:
            Full=Flavivirin protease NS3 catalytic subunit; AltName:
            Full=Non-structural protein 3; Contains: RecName:
            Full=Non-structural protein 4A; Short=NS4A; Contains:
            RecName: Full=Peptide 2k; Contains: RecName:
            Full=Non-structural protein 4B; Short=NS4B; Contains:
            RecName: Full=RNA-directed RNA polymerase NS5; AltName:
            Full=Non-structural protein 5
 gi|37543958|gb|AAM51538.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|316983481|gb|ADU76230.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|315637257|ref|ZP_07892476.1| phage protein [Arcobacter butzleri JV22]
 gi|315478421|gb|EFU69135.1| phage protein [Arcobacter butzleri JV22]
          Length = 574

 Score = 40.3 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 56/193 (29%), Gaps = 24/193 (12%)

Query: 22  AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81
            +    F  F   +FP               + Q E +E +    +  ++   P   K A
Sbjct: 69  EKQKSDFHYFRETYFP------HYYSLEGKSKLQDE-LEIIY---YKIIDQYKPMGLKFA 118

Query: 82  ISAGRGIGKTTLNAWMM-LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           I+A RG GK+T  +    +W I       I   +++    +  + A  ++       +  
Sbjct: 119 IAAPRGFGKSTDVSIAFPIWCIVNNYKHFITLFSDAIELAETLVEAIKAELEENERLKQD 178

Query: 141 F--EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP--------DTFVGPHN- 189
           F        +   G         +        +    +   RP        +      + 
Sbjct: 179 FSNACGIGKVWKIGEIVTNNNIKVKAYGSGKRVRGVKHGTFRPDLAIIDDLENDTNVRSR 238

Query: 190 --THGMAVFNDEA 200
                +  + DEA
Sbjct: 239 TQRDKLEDWLDEA 251


>gi|310002710|gb|ADO97110.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|300675543|gb|ADK26439.1| polyprotein [Dengue virus 3]
 gi|300675553|gb|ADK26444.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|300675505|gb|ADK26422.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|298388359|gb|ADI80659.1| polyprotein [Dengue virus 3]
 gi|300675509|gb|ADK26424.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|291233977|ref|XP_002736929.1| PREDICTED: nat10 protein-like [Saccoglossus kowalevskii]
          Length = 1024

 Score = 40.3 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 45/150 (30%), Gaps = 15/150 (10%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q + +             S       A++A RG GK+     + +         +I   A
Sbjct: 260 QAKAVLKFVEAISEKTLRST-----VAMTAARGRGKSAAL-GLAMSAAVAFSYSNIFVTA 313

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            S   L+  ++  V K    L ++   + + +      +   ++  ++  + +       
Sbjct: 314 PSPENLRT-MFDFVFKGFDALEYQEHLDYELVQSTNPEFNKAVVRVNIFREHRQTIQYIH 372

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                +              V  DEA+  P
Sbjct: 373 PSDAHKLGQAE--------LVVIDEAAAIP 394


>gi|228541630|gb|ACQ44484.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|225691026|gb|ACO06201.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070351|gb|ACL99056.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|254227443|ref|ZP_04920875.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262396292|ref|YP_003288145.1| hypothetical protein VEA_000995 [Vibrio sp. Ex25]
 gi|151940055|gb|EDN58881.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262339886|gb|ACY53680.1| hypothetical protein VEA_000995 [Vibrio sp. Ex25]
          Length = 675

 Score = 40.3 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 34/248 (13%), Positives = 64/248 (25%), Gaps = 40/248 (16%)

Query: 40  IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFK--CAISAGRGIGKTTLNAWM 97
            + KPL       + + E       H  S +        K    ++A RG GKT+     
Sbjct: 133 EQDKPLPTAPDIKQAEKESHYTEQEHAISLIEKVVTGHRKRPLILTADRGRGKTSALGIA 192

Query: 98  MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
               +  +    I+  A S   ++          L +LP+        L           
Sbjct: 193 CA-NLLQQKPFRILITAPSIKAVEPVYQH----ALRLLPNAQRIRKDRLE---------- 237

Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217
                         + +   +      +         +  DEA+  P       +     
Sbjct: 238 --------------SGQGAIQFIAPDELLSSRPECDLLLVDEAAAIP-------VPMLKS 276

Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277
           +  +   ++ S T          F I   DW + Q      +               L+S
Sbjct: 277 ITEHYHRLVFSTTIHGYEGCGRGFTIKFVDWLQKQRSGM--KTWHMTQPIRWSMNDALES 334

Query: 278 DVARIEIL 285
            +    +L
Sbjct: 335 WLYDAFLL 342


>gi|316983459|gb|ADU76219.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|316983445|gb|ADU76212.1| polyprotein [Dengue virus 3]
          Length = 3351

 Score = 40.3 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1631 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1684

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1685 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1726

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1727 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1783

Query: 264  GFHEG 268
             +   
Sbjct: 1784 EWITD 1788


>gi|316983441|gb|ADU76210.1| polyprotein [Dengue virus 3]
          Length = 3315

 Score = 40.3 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1595 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1648

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1649 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1690

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1691 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1747

Query: 264  GFHEG 268
             +   
Sbjct: 1748 EWITD 1752


>gi|300675551|gb|ADK26443.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|157418353|gb|ABV54903.1| polyprotein [Dengue virus 3]
          Length = 3297

 Score = 40.3 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1577 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1630

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1631 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1672

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1673 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1729

Query: 264  GFHEG 268
             +   
Sbjct: 1730 EWITD 1734


>gi|28199891|ref|NP_780205.1| hypothetical protein PD2030 [Xylella fastidiosa Temecula1]
 gi|28058012|gb|AAO29854.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
          Length = 616

 Score = 40.3 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 44/154 (28%), Gaps = 24/154 (15%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKT + A    +L +  P   I    N+   LK      ++   +    +   E    
Sbjct: 113 GSGKTIVLALKAAYLHTQYPDWRIAVTFNT-RSLKAQFQRLIT---NFCIEQSGEEPDWT 168

Query: 147 SLH-PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH-------------- 191
            +   + W A       G+  ++   T  T+ + R  +F   +  +              
Sbjct: 169 KIRVINAWGAPGGAARDGLYYEYCCATGATFFDFRRASFTFVNEENAFNGACRNALEDAA 228

Query: 192 -----GMAVFNDEASGTPDIINKSILGFFTELNP 220
                   +  DEA   P    K      T    
Sbjct: 229 DAAGLYDVILLDEAQDLPPSFLKLCYAMLTPEKR 262


>gi|46124913|ref|XP_387010.1| hypothetical protein FG06834.1 [Gibberella zeae PH-1]
          Length = 873

 Score = 40.3 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 41/173 (23%), Gaps = 19/173 (10%)

Query: 40  IKGKPLEHFSQPH----RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95
                   +  P      WQ   ++                       A  G GK+ +  
Sbjct: 102 ELDLSHPSYDLPRQMIYPWQKACLKGPG---------LLTGEKNLVYCAPTGGGKSLVAD 152

Query: 96  WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM-QSLSLHPSGWY 154
            +ML  I    G   + +          L  E  +WL  +     F    ++      W 
Sbjct: 153 VLMLKRILQEKGTKALLVLP-----YVALVQEKVRWLRSVVQGLRFAPETAIDDDKRIWR 207

Query: 155 AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207
               E ++ +         R    +          +   AV  DE     D  
Sbjct: 208 RRADENAVRVVGFFGGGKVRATWADFDIAIDDCSISKLSAVVLDELHMIDDDH 260


>gi|71899962|ref|ZP_00682108.1| conserved hypothetical protein [Xylella fastidiosa Ann-1]
 gi|71730249|gb|EAO32334.1| conserved hypothetical protein [Xylella fastidiosa Ann-1]
          Length = 614

 Score = 40.3 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 44/154 (28%), Gaps = 24/154 (15%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKT + A    +L +  P   I    N+   LK      ++   +    +   E    
Sbjct: 111 GSGKTIVLALKAAYLHTQYPDWRIAVTFNT-RSLKAQFQRLIT---NFCIEQSGEEPDWT 166

Query: 147 SLH-PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH-------------- 191
            +   + W A       G+  ++   T  T+ + R  +F   +  +              
Sbjct: 167 KIRIINAWGAPGGAARDGLYYEYCCATGATFFDFRRASFTFVNEENAFNGACRNALEDAA 226

Query: 192 -----GMAVFNDEASGTPDIINKSILGFFTELNP 220
                   +  DEA   P    K      T    
Sbjct: 227 DAAGLYDVILLDEAQDLPPSFLKLCYAMLTPEKR 260


>gi|37525956|ref|NP_929300.1| hypothetical protein plu2039 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36785385|emb|CAE14332.1| phosphate starvation-inducible protein [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 262

 Score = 40.3 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 40/141 (28%), Gaps = 13/141 (9%)

Query: 76  TIFKCAISAGR-GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
              K  I++G  G GKT ++A M    +  +    II                V +    
Sbjct: 71  NYKKLIIASGEAGCGKTFISAAMAADALINKEIDRIIVTRP------------VLQADED 118

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
           L        +  + +    Y  LL++      ++         E  P  ++         
Sbjct: 119 LGFLPGDMAEKFAPYFRPVYDVLLKRMGASFLQYCLRPEIGKVEIAPFAYMRGRTFENAF 178

Query: 195 VFNDEASGTPDIINKSILGFF 215
           V  DEA        K  L   
Sbjct: 179 VILDEAQNVTVNQMKMFLTRL 199


>gi|154248608|ref|YP_001419566.1| type III restriction protein res subunit [Xanthobacter
           autotrophicus Py2]
 gi|154162693|gb|ABS69909.1| type III restriction protein res subunit [Xanthobacter
           autotrophicus Py2]
          Length = 999

 Score = 40.3 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 57/186 (30%), Gaps = 24/186 (12%)

Query: 60  EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI----------STRPGMS 109
             +      +   +NP +F+ A+    G GKTT+ A ++ W             +R  + 
Sbjct: 139 RRLRDELEQHNKGANPALFRLAMKMATGSGKTTVMAMLIAWQAVNAARKATKDFSRAFLI 198

Query: 110 IICIANSETQLKNTLWAEVSKWL--------SMLPHRHWFE-----MQSLSLHPSGWYAE 156
           I        +L+  L +E   +          MLP     E       +     +    +
Sbjct: 199 IAPGITIRDRLRVLLPSEPDNYYETREIVPPEMLPDIRRAEIVITNYHAFQHRETLALPK 258

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFF 215
           +    +  ++     T  T +E          N   + V NDEA       +     G  
Sbjct: 259 VARSFLQGNAPEPLKTTETDAEMLERACGKLLNYDRVTVINDEAHHCYRHKVGGDAEGPL 318

Query: 216 TELNPN 221
           T  +  
Sbjct: 319 TGEDKK 324


>gi|253745031|gb|EET01146.1| U5 small nuclear ribonucleoprotein 200 kDa helicase, putative
           [Giardia intestinalis ATCC 50581]
          Length = 1568

 Score = 40.3 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 51/197 (25%), Gaps = 17/197 (8%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTR-----PGMSIICIANSETQLKNTLWAEVSKWLS 133
              ++A  G GKT +  W M+ L+        P    I +A  +  ++  L    S    
Sbjct: 225 NTLVAAPTGAGKTNIALWAMICLLHISQCQHLPVQLAIYVAPLKALVREVLSRLESSLQQ 284

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT-------YSEERPDTFVG 186
           +    +    +          A          S    +   T        S+   + F  
Sbjct: 285 LPNSYNAILCEYTGEESISLSAISSLLHGLHTSTTLIVLVATPEKLDVFTSKLIGEDFQL 344

Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFT----ELNPNRFWIMTSNTRRLNGWFYDIFN 242
                 + V  DE     D    S++            N   +  S T        +  +
Sbjct: 345 IRAR-LVLVVLDELHLIGDHTRGSVIEELVLRFHRHYQNTMLLALSATIPNTQQLAEFLH 403

Query: 243 IPLEDWKRYQIDTRTVE 259
               +   +    R V 
Sbjct: 404 CAPSNTLVFDSSYRAVS 420


>gi|170061820|ref|XP_001866402.1| pre-mRNA-splicing helicase BRR2 [Culex quinquefasciatus]
 gi|167879899|gb|EDS43282.1| pre-mRNA-splicing helicase BRR2 [Culex quinquefasciatus]
          Length = 853

 Score = 40.3 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 19/168 (11%), Positives = 41/168 (24%), Gaps = 21/168 (12%)

Query: 45  LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
           L  FSQ +  Q +   AV  +                + A  G GKT +  + +L  +  
Sbjct: 305 LYAFSQFNPIQTQVFNAVYNNED-----------NVFVGAPTGSGKTRIAEFAVLRKLQQ 353

Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
            P   ++ + + +   +         W         F                 +  +  
Sbjct: 354 NPHGRVLYLVSRDALAELI----FMDWHQK------FGQNLGCKVVKLTGETGTDLKLIA 403

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212
             +    T   ++          +  +      DE           + 
Sbjct: 404 KGQIIVTTADKWNILSRRWKQRKNVQNIQLFIVDELQLISGEEGPVLE 451


>gi|56698829|gb|AAW23129.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 40.3 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 47/185 (25%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F    +   ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNSPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221128221|ref|XP_002165482.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 2136

 Score = 40.3 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 25/255 (9%), Positives = 56/255 (21%), Gaps = 40/255 (15%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               I A  G GKT    + +L L+        + I + ++  +       + W S     
Sbjct: 1349 NILIGAPTGSGKTICAEFAILHLLLQHHDARCVYITSLQSLAEQV----FTDWRSK---- 1400

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
              F +               +  +         T   +           +  +      D
Sbjct: 1401 --FGIMLGKNVVMLTGETSGDLKLLAKGNIIISTPDKWDVLSRRWKQRKNVQNVNLFILD 1458

Query: 199  EASGTPDIINKSIL------GFFTELNPNRF-WIMTSNTRRLNGWFYDIFNIPLEDWKRY 251
            E           +        + +         +  S++   +        +   +   +
Sbjct: 1459 ELHLIGGENGPVMEVICSRMRYISSQIEKGIRIVALSSSLSNSKDIAQWLGVSTNNIFNF 1518

Query: 252  QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311
              + R V                         I G       +  I    I+ A      
Sbjct: 1519 HPNVRPVPLELH--------------------IQGFNITHTGSRLI--AMIKPAYQSIVR 1556

Query: 312  DDLYAPLIMGCDIAG 326
                 P+I+    + 
Sbjct: 1557 LSPRKPVIVFV-PSR 1570


>gi|182680607|ref|YP_001828767.1| DNA-dependent helicase II [Xylella fastidiosa M23]
 gi|182630717|gb|ACB91493.1| DNA helicase II [Xylella fastidiosa M23]
          Length = 723

 Score = 40.3 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 79/294 (26%), Gaps = 32/294 (10%)

Query: 62  VDVHCHSNVNNSNPTIF-KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
           +  H + N   +         I AG G GKT +    ++WL       + +    + + +
Sbjct: 1   MLDHLNQNQREAVAAAPGHYLILAGAGSGKTRVLTHRIVWL-------NEVNGVPTHSMM 53

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
             T     +K    +  R   +++        W       +  +   H+       + + 
Sbjct: 54  AVTF---TNKAAGEIQQRIDLQLRHGKRGM--WIGTFHSLAHRLLRLHWNDATLPENFQV 108

Query: 181 PDTFVGPHNTHGM---AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
            D+         +      ND     P       +    +       I        + W 
Sbjct: 109 IDSDDQLRLVKRVIQSLGLNDTL--FPPKQAMWWINTQKDEGRRPEHI---QPESHDDWI 163

Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297
                     +  YQ        +D             D+         +F +  ++ F 
Sbjct: 164 ----ETQRRIYTEYQERCNRAGLVDFSELLLRAHELLRDTPALLTHYRSRFREILIDEFQ 219

Query: 298 PHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
             N I+ A  R   +D      +       G D   +   RG  +EH+  +   
Sbjct: 220 DTNAIQYAFVRVLANDTGHIFAV-------GDDDQAIYGWRGAKVEHVQHFLKD 266


>gi|220927525|ref|YP_002504434.1| type III restriction protein res subunit [Clostridium
           cellulolyticum H10]
 gi|219997853|gb|ACL74454.1| type III restriction protein res subunit [Clostridium
           cellulolyticum H10]
          Length = 1100

 Score = 40.3 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 23/203 (11%), Positives = 51/203 (25%), Gaps = 18/203 (8%)

Query: 36  FPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT-TLN 94
           F +  +   +         Q+  + A+  H     N    T     +    G GKT T+ 
Sbjct: 125 FSFREEDN-VTGAKGLRPPQIGALHAIAAHFAVGKNFEPAT-----VVLPTGTGKTETML 178

Query: 95  AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWY 154
           +  +   +        + I  S+  L+  ++ +      +                    
Sbjct: 179 SMQVYKRLL-----RTLVIVPSDA-LRTQIYKKFLTLGVLPDLEVVPSETIGPNVTRLVT 232

Query: 155 AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH--NTHGMAVFNDEASGTPDIINKSIL 212
               ++      +   I                     +   +  DEA   P      + 
Sbjct: 233 GIRSKEEALAIIEKSNIIITLPKTLSASDPEALRILTEYCTDLIVDEAHHIPASQWSLVC 292

Query: 213 GFFTELNPNRFWIMTSNTRRLNG 235
             F++    R    T+   R + 
Sbjct: 293 QMFSD---KRITQFTATPFRRDN 312


>gi|71899705|ref|ZP_00681857.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1]
 gi|71730500|gb|EAO32579.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1]
          Length = 723

 Score = 40.3 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 79/294 (26%), Gaps = 32/294 (10%)

Query: 62  VDVHCHSNVNNSNPTIF-KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
           +  H + N   +         I AG G GKT +    ++WL       + +    + + +
Sbjct: 1   MLDHLNQNQREAVAAAPGHYLILAGAGSGKTRVLTHRIVWL-------NEVNGVPTHSMM 53

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
             T     +K    +  R   +++        W       +  +   H+       + + 
Sbjct: 54  AVTF---TNKAAGEIQQRIDLQLRHGKRGM--WIGTFHSLAHRLLRLHWNDATLPENFQV 108

Query: 181 PDTFVGPHNTHGM---AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
            D+         +      ND     P       +    +       I        + W 
Sbjct: 109 IDSDDQLRLVKRVIQSLGLNDTL--FPPKQAMWWINTQKDEGRRPEHI---QPESHDDWI 163

Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297
                     +  YQ        +D             D+         +F +  ++ F 
Sbjct: 164 ----ETQRRIYTEYQERCNRAGLVDFSELLLRAHELLRDTPALLTHYRSRFREILIDEFQ 219

Query: 298 PHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
             N I+ A  R   +D      +       G D   +   RG  +EH+  +   
Sbjct: 220 DTNAIQYAFVRVLANDTGHIFAV-------GDDDQAIYGWRGAKVEHVQHFLKD 266


>gi|71275503|ref|ZP_00651789.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Dixon]
 gi|71900751|ref|ZP_00682872.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1]
 gi|170729288|ref|YP_001774721.1| DNA-dependent helicase II [Xylella fastidiosa M12]
 gi|71163803|gb|EAO13519.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Dixon]
 gi|71729481|gb|EAO31591.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1]
 gi|167964081|gb|ACA11091.1| DNA helicase II [Xylella fastidiosa M12]
          Length = 723

 Score = 40.3 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 79/294 (26%), Gaps = 32/294 (10%)

Query: 62  VDVHCHSNVNNSNPTIF-KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
           +  H + N   +         I AG G GKT +    ++WL       + +    + + +
Sbjct: 1   MLDHLNQNQREAVAAAPGHYLILAGAGSGKTRVLTHRIVWL-------NEVNGVPTHSMM 53

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
             T     +K    +  R   +++        W       +  +   H+       + + 
Sbjct: 54  AVTF---TNKAAGEIQQRIDLQLRHGKRGM--WIGTFHSLAHRLLRLHWNDATLPENFQV 108

Query: 181 PDTFVGPHNTHGM---AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
            D+         +      ND     P       +    +       I        + W 
Sbjct: 109 IDSDDQLRLVKRVIQSLGLNDTL--FPPKQAMWWINTQKDEGRRPEHI---QPESHDDWI 163

Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297
                     +  YQ        +D             D+         +F +  ++ F 
Sbjct: 164 ----ETQRRIYTEYQERCNRAGLVDFSELLLRAHELLRDTPALLTHYRSRFREILIDEFQ 219

Query: 298 PHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
             N I+ A  R   +D      +       G D   +   RG  +EH+  +   
Sbjct: 220 DTNAIQYAFVRVLANDTGHIFAV-------GDDDQAIYGWRGAKVEHVQHFLKD 266


>gi|325690440|gb|EGD32443.1| prophage LambdaSa04 protein [Streptococcus sanguinis SK115]
          Length = 530

 Score = 39.9 bits (91), Expect = 0.55,   Method: Composition-based stats.
 Identities = 35/317 (11%), Positives = 74/317 (23%), Gaps = 53/317 (16%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ + +  +      + N    T +   +   +  GK+ L A     +           
Sbjct: 48  PWQEQIVRDLFGIVKEDGNRQFLTAY---VEIPKKNGKSELAAA----IALYLLYADGEA 100

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            A       +   A +            F++    +  S    +  +             
Sbjct: 101 SAEVYGAACDRNQASIV-----------FDVAKQMVLMSRALEKRSKVMGATKRIINYSN 149

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT-- 230
              Y     +T    H  +   +  DE    P+     +L   +     +       T  
Sbjct: 150 AGFYQVLSAETG-TKHGLNVSGLVFDEIHAQPNRHLYDVLTKGSGDAREQPLFFIITTAG 208

Query: 231 RRLNGWFYDIFNIP----------------------LEDW----KRYQIDTRTVEGIDSG 264
              N   Y++                           +DW       + +      I   
Sbjct: 209 NDKNSICYELHTKALDILKGRKKDSTFYPVVYGLSEEDDWNDEENWLKANPSLGHTIGID 268

Query: 265 FHEGIISRYGLDS---DVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLIM 320
                      +    +V +   L  +    V  +IP +  ++     +           
Sbjct: 269 RVREAYLNALDNPAEENVFKQLRLNIWTNSAVT-WIPEHIYDKGRQPIDVESLKGRDCYA 327

Query: 321 GCDIAGEGGDKTVVVFR 337
           G D++    D T  V  
Sbjct: 328 GLDLSST-SDITAFVLI 343


>gi|255654809|ref|ZP_05400218.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-23m63]
 gi|296449553|ref|ZP_06891330.1| cold-shock DEAD box protein A [Clostridium difficile NAP08]
 gi|296878124|ref|ZP_06902139.1| cold-shock DEAD box protein A [Clostridium difficile NAP07]
 gi|296261617|gb|EFH08435.1| cold-shock DEAD box protein A [Clostridium difficile NAP08]
 gi|296430877|gb|EFH16709.1| cold-shock DEAD box protein A [Clostridium difficile NAP07]
          Length = 537

 Score = 39.9 bits (91), Expect = 0.55,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 58/238 (24%), Gaps = 23/238 (9%)

Query: 40  IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99
            K      F +P   Q + + A+                     A  G GKT   +  +L
Sbjct: 16  KKAIAEMGFEEPSPIQAQSIPAILSGKD------------VIGQAQTGTGKTAAFSIPIL 63

Query: 100 WLIS-TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
             I      +  + +  +          E+ K       ++   +++L ++        +
Sbjct: 64  ETIDPNNRSLQAVVLCPTRELAIQVS-TEIRKL-----AKYSHGIKTLPIYGGQPIDRQI 117

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218
           +    + S    +                   +   +  DEA    D+  +  +      
Sbjct: 118 KS---LKSGVQVVIGTPGRTIDHINRKTLKMDNVKMIILDEADEMLDMGFREDIEMILSK 174

Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLE-DWKRYQIDTRTVEGIDSGFHEGIISRYGL 275
            P        +     G          + +  +      TV      + E   S    
Sbjct: 175 IPEERQTTFFSATMPRGILELTKRYQKDPEHIKVVRKELTVSNTKQYYIETRSSNKLE 232


>gi|225434327|ref|XP_002266157.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297745752|emb|CBI15808.3| unnamed protein product [Vitis vinifera]
          Length = 568

 Score = 39.9 bits (91), Expect = 0.55,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 46/166 (27%), Gaps = 24/166 (14%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGR--------GIGKTTLNAWMMLWLISTRPGMS 109
            M+ +  H ++            A+ +GR        G GKT   A  M+     +P + 
Sbjct: 134 IMKDITFHEYTRPTFIQAQAMPVAL-SGRDLLGCAETGSGKTAAFAIPMIQHCLAQPPVR 192

Query: 110 ------IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
                  + +A +          E+++ +          + S           + EQ   
Sbjct: 193 RGDGPLALVLAPT---------RELAQQIEKEVKAFSRSLDSFRTAIVVGGTNISEQRSE 243

Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209
           + +    +                  +    V  DEA    D+  +
Sbjct: 244 LRAGVNIVVATPGRFIHHLQEGNTSLSRISFVVLDEADRMLDMGFE 289


>gi|126698341|ref|YP_001087238.1| putative ATP-dependent RNA helicase [Clostridium difficile 630]
 gi|254974380|ref|ZP_05270852.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-66c26]
 gi|255091773|ref|ZP_05321251.1| putative ATP-dependent RNA helicase [Clostridium difficile CIP
           107932]
 gi|255099876|ref|ZP_05328853.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-63q42]
 gi|255305765|ref|ZP_05349937.1| putative ATP-dependent RNA helicase [Clostridium difficile ATCC
           43255]
 gi|255313504|ref|ZP_05355087.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-76w55]
 gi|255516192|ref|ZP_05383868.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-97b34]
 gi|255649288|ref|ZP_05396190.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-37x79]
 gi|260682458|ref|YP_003213743.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
 gi|260686057|ref|YP_003217190.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
 gi|306519386|ref|ZP_07405733.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-32g58]
 gi|115249778|emb|CAJ67595.1| putative ATP-dependent RNA helicase [Clostridium difficile]
 gi|260208621|emb|CBA61352.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
 gi|260212073|emb|CBE02663.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
          Length = 537

 Score = 39.9 bits (91), Expect = 0.55,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 58/238 (24%), Gaps = 23/238 (9%)

Query: 40  IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99
            K      F +P   Q + + A+                     A  G GKT   +  +L
Sbjct: 16  KKAIAEMGFEEPSPIQAQSIPAILSGKD------------VIGQAQTGTGKTAAFSIPIL 63

Query: 100 WLIS-TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
             I      +  + +  +          E+ K       ++   +++L ++        +
Sbjct: 64  ETIDPNNRSLQAVVLCPTRELAIQVS-TEIRKL-----AKYSHGIKTLPIYGGQPIDRQI 117

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218
           +    + S    +                   +   +  DEA    D+  +  +      
Sbjct: 118 KS---LKSGVQVVIGTPGRTIDHINRKTLKMDNVKMIILDEADEMLDMGFREDIEMILSK 174

Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLE-DWKRYQIDTRTVEGIDSGFHEGIISRYGL 275
            P        +     G          + +  +      TV      + E   S    
Sbjct: 175 IPEERQTTFFSATMPRGILELTKRYQKDPEHIKVVRKELTVSNTKQYYIETRSSNKLE 232


>gi|156548982|ref|XP_001607217.1| PREDICTED: similar to CG7922-PA [Nasonia vitripennis]
          Length = 1498

 Score = 39.9 bits (91), Expect = 0.55,   Method: Composition-based stats.
 Identities = 24/210 (11%), Positives = 59/210 (28%), Gaps = 15/210 (7%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              +    G+GKT + A +M       P   ++ +A ++  +      ++     ++   
Sbjct: 55  NTLVCLPTGLGKTFIAAVVMYNFWRWYPRGRVVFLAPTKPLVAQ----QIEACHEIMGI- 109

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                   ++  +G   ++  +   I  +    T +T+ ++  +            +  D
Sbjct: 110 ----PSEETVELTGAINQVKRKQAWIQKRVVFATPQTFQKDLQN--DIVPCQLIKCIVID 163

Query: 199 EASG-TPDIINKSILGFFTELNPNRFWIMTS-NTRRLNGWFYDIFNIP--LEDWKRYQID 254
           EA           I+   ++       +  S           ++       E   R    
Sbjct: 164 EAHKALGKHSYCEIVRMMSDKTKFFRILALSATPGSKIDHVREVIQNLLISELELRDDSS 223

Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
                  +    E II   G D    +   
Sbjct: 224 PDITPYTNDRSMEKIIVGLGTDLTNYKDRY 253


>gi|126178399|ref|YP_001046364.1| type III restriction enzyme, res subunit [Methanoculleus marisnigri
           JR1]
 gi|125861193|gb|ABN56382.1| type III restriction enzyme, res subunit [Methanoculleus marisnigri
           JR1]
          Length = 1062

 Score = 39.9 bits (91), Expect = 0.55,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 62/187 (33%), Gaps = 31/187 (16%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG--M 108
           P+ +Q E +E +               +K  I A  G GKT ++A+     +  RPG   
Sbjct: 333 PYYYQKEILERL------KAERELHNNYKNLIVAATGTGKTVISAFDYK-SLFQRPGEYP 385

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            ++ +A+ E  LK +    +  +  +L  +++ ++      P+                 
Sbjct: 386 RLLFVAHREEILKQS----IQVFRGVLKDQNFGDLLVGGSEPAQIEH------------- 428

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
             +     S    +        +   V  DE         + +L ++T         +T+
Sbjct: 429 --LFTSIQSLNSRNLPEITPPDYYDMVIVDEFHHAAAPSYQRLLSYYTPG---VLLGLTA 483

Query: 229 NTRRLNG 235
              R + 
Sbjct: 484 TPERTDN 490


>gi|268534660|ref|XP_002632461.1| C. briggsae CBR-MEL-46 protein [Caenorhabditis briggsae]
          Length = 935

 Score = 39.9 bits (91), Expect = 0.55,   Method: Composition-based stats.
 Identities = 18/158 (11%), Positives = 42/158 (26%), Gaps = 13/158 (8%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLIS--TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
             + A  G GKT + + + +  +         +I    +          E+S  +     
Sbjct: 54  MLVQAKSGTGKTLVFSVLAVENLDLKAHYIQKVIIT-PT---------REISTQIKETVR 103

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
           +        S++  G   +L    +   ++   +        +         +H      
Sbjct: 104 KLTPAGARTSVYTGGIGHKLNVIDLK-KTRPQIVIGTPGRVAQLIRMGAMDISHVDFFVL 162

Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
           DEA    D + K  +       P    +   +      
Sbjct: 163 DEADKLMDEVFKPDINTIINSLPPIRQVAVFSATYPRN 200


>gi|88859352|ref|ZP_01133992.1| putative helicase [Pseudoalteromonas tunicata D2]
 gi|88818369|gb|EAR28184.1| putative helicase [Pseudoalteromonas tunicata D2]
          Length = 1050

 Score = 39.9 bits (91), Expect = 0.55,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 62/185 (33%), Gaps = 28/185 (15%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P   QL  +E +       V  +    FK  + A  G GKT ++A+    +   +P    
Sbjct: 320 PKTHQLTILEKLS------VERTVHQRFKNLVVAATGTGKTIISAFDFKTVYDAKPNAQF 373

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + +A+ E  LK       S +  +L +  + E+   +  P  +                 
Sbjct: 374 LFVAHREEILKQA----QSAYRGVLKNNQFGELWVGNYKPQSY---------------NQ 414

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
           +     +       +   + +   +  DE         + +L +FT   P     +T+  
Sbjct: 415 LFASIQTLNSQLDTLNLSSDYYDYIVIDEVHHVSAASYRMVLNYFT---PQILLGLTATP 471

Query: 231 RRLNG 235
            R +G
Sbjct: 472 ERQDG 476


>gi|170055165|ref|XP_001863460.1| pre-mRNA-splicing helicase BRR2 [Culex quinquefasciatus]
 gi|167875204|gb|EDS38587.1| pre-mRNA-splicing helicase BRR2 [Culex quinquefasciatus]
          Length = 2144

 Score = 39.9 bits (91), Expect = 0.56,   Method: Composition-based stats.
 Identities = 21/221 (9%), Positives = 48/221 (21%), Gaps = 28/221 (12%)

Query: 46   EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
            + F Q +  Q +   AV                   + A  G GKTT+  + +L ++   
Sbjct: 1324 DRFPQFNPIQTQVFNAVYNSED-----------NVFVGAPTGSGKTTIAEFAVLRMLQQN 1372

Query: 106  PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
            P   ++ + + +   +         W         F                 +  +   
Sbjct: 1373 PHGRVVYLVSRDALAELI----FMDWHQK------FGQNLGCKVVKLTGETGTDLKLIAK 1422

Query: 166  SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN------ 219
             +    T   +           +  +      DE           +    + +       
Sbjct: 1423 GQIIVTTADKWDILSRRWKQRKNVQNIQLFIVDELQLIGGEEGPVLEVVCSRMRYISSQI 1482

Query: 220  -PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
                  I  S +                    +    R + 
Sbjct: 1483 EKQIRIIALSASLSDARDVAQWLGCNANATFNFHPSVRPIP 1523


>gi|158851702|gb|ABW82052.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 39.9 bits (91), Expect = 0.56,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 47/185 (25%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P        ++   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVSNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ K     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEEKDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|317121963|ref|YP_004101966.1| helicase [Thermaerobacter marianensis DSM 12885]
 gi|315591943|gb|ADU51239.1| helicase domain protein [Thermaerobacter marianensis DSM 12885]
          Length = 524

 Score = 39.9 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 31/257 (12%), Positives = 75/257 (29%), Gaps = 42/257 (16%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             WQ + ++ +     +          +  ++   G+GKT     +   L++      ++
Sbjct: 11  RLWQHQGVQYLGYQVEAARRVVEDLHGRAILADEVGLGKTVEAGLVTRELMARHGIRRVL 70

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +  +           VS+W +    +    +       +   AE +  S+ +  +    
Sbjct: 71  VLVPT---------PLVSQWAAEFRDKFALTLAVNPRGAALRRAERIVISIDLAKRD--- 118

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT- 230
                     +            V  DEA    +   +    F   L      ++++   
Sbjct: 119 ----------EPRRVLQARPWDLVIVDEAHKLKNRNTQV-HAFVRGLQARYLLLLSATPL 167

Query: 231 -RRLNGWFY-------DIFNIPLEDWKRY---QIDTRTVEGIDSGFHEGIISRYGLDSDV 279
              L   +        D+F    E W+ +   +   +  + +     + +I         
Sbjct: 168 QNDLTELYSLVSLVRPDLFGSYSEFWRNFLLDKRTPKDPQQLKQVLAQVMIRNR------ 221

Query: 280 ARIEILGQFPQQEVNNF 296
            R E+   FP +EV   
Sbjct: 222 -RAELDLPFPAREVELV 237


>gi|158851716|gb|ABW82059.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 39.9 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
             + +  G+ +            MT+        F        ++ +     +     
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822


>gi|145413604|gb|AAW51416.2| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 39.9 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
             + +  G+ +            MT+        F        ++ +     +     
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822


>gi|145413608|gb|AAW51419.2| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 39.9 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
             + +  G+ +            MT+        F        ++ +     +     
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822


>gi|145413602|gb|AAW51415.2| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 39.9 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
             + +  G+ +            MT+        F        ++ +     +     
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822


>gi|145413594|gb|AAW51410.2| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 39.9 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
             + +  G+ +            MT+        F        ++ +     +     
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822


>gi|118443735|ref|YP_878084.1| helicase [Clostridium novyi NT]
 gi|118134191|gb|ABK61235.1| helicase, putative [Clostridium novyi NT]
          Length = 964

 Score = 39.9 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 63/228 (27%), Gaps = 36/228 (15%)

Query: 10  KLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFS--QPHRWQLEFMEAVDVHCH 67
            LE       +  E + S+ NF+        K    +++   +P+  Q   +  ++    
Sbjct: 179 YLELWESTSFVDDEFLNSYNNFIQEIRKTEKKTLEFKNYEIIKPNYMQNRAISNLNRLRL 238

Query: 68  SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127
              +       K  + A  G GKT ++A+ ++          ++ + + E  LK      
Sbjct: 239 QGED-------KALVVAATGTGKTYMSAFDVI----NYNPKRMLFLVHREDILK------ 281

Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187
                         E     L  +             D     +     S          
Sbjct: 282 ------------GAEATFRKLVKNKNKTTGFLTGTRKDLGSDYLFSTIQSMNN--NLESF 327

Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
                  V  DEA        K ++ +F    P     MT+   R + 
Sbjct: 328 KADEFEYVIIDEAHHAASPSYKKVMNYF---KPKFILGMTATPERCDN 372


>gi|57544894|gb|AAW51412.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 39.9 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
             + +  G+ +            MT+        F        ++ +     +     
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822


>gi|57544906|gb|AAW51418.1| polyprotein [Dengue virus 3]
 gi|145413599|gb|AAW51413.2| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 39.9 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
             + +  G+ +            MT+        F        ++ +     +     
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822


>gi|57544904|gb|AAW51417.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 39.9 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
             + +  G+ +            MT+        F        ++ +     +     
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822


>gi|57544886|gb|AAW51408.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 39.9 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
             + +  G+ +            MT+        F        ++ +     +     
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822


>gi|51850381|dbj|BAD42418.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 39.9 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
             + +  G+ +            MT+        F        ++ +     +     
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822


>gi|51850385|dbj|BAD42420.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 39.9 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
             + +  G+ +            MT+        F        ++ +     +     
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822


>gi|51850383|dbj|BAD42419.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 39.9 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
             + +  G+ +            MT+        F        ++ +     +     
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822


>gi|316983465|gb|ADU76222.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 39.9 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTTRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|304436852|ref|ZP_07396817.1| phage terminase large subunit [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304370167|gb|EFM23827.1| phage terminase large subunit [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 605

 Score = 39.9 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 57/231 (24%), Gaps = 24/231 (10%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
            AG  +GKT     M+ + ++  P   ++ +  SE   K T    +   + + P      
Sbjct: 79  CAGTQLGKTAAEQNMIGYAVAQDPAP-MLVVYPSEKLAKFTSEKRLQPMIKLSPA----- 132

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
                   +  + E   + + +      I          ++     +     +F DE   
Sbjct: 133 -------LADKFDERGSKDLELSLGGMYIALVGA-----NSPSELSSRPVRYIFFDEIDK 180

Query: 203 TPDIINKSILGF-FTELNPNRF----WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257
            P                   F     +  S      G  +  +      ++ Y      
Sbjct: 181 FPKWTGAEAGPLELAAERTKTFYNRKIVKVSTPTLKTGNIWQGWETADIQYRYYVPCPHC 240

Query: 258 VEGIDSGFHE-GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
            E     F +                    ++  + ++N      +     
Sbjct: 241 GEMQTLEFRQIKWTDGADETEARMAAYYECKYCHETIDNRHKPAMLRMGEW 291


>gi|145413596|gb|AAW51411.2| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 39.9 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPVRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
             + +  G+ +            MT+        F        ++ +     +     
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822


>gi|10803640|ref|NP_046038.1| hypothetical protein VNG7093 [Halobacterium sp. NRC-1]
 gi|16120082|ref|NP_395670.1| DNA repair protein [Halobacterium sp. NRC-1]
 gi|169237281|ref|YP_001690487.1| RAD25-type DNA repair helicase [Halobacterium salinarum R1]
 gi|2822371|gb|AAC82877.1| unknown [Halobacterium sp. NRC-1]
 gi|10584184|gb|AAG20805.1| DNA repair protein [Halobacterium sp. NRC-1]
 gi|167728347|emb|CAP15151.1| RAD25-type DNA repair helicase [Halobacterium salinarum R1]
          Length = 469

 Score = 39.9 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 22/253 (8%), Positives = 59/253 (23%), Gaps = 42/253 (16%)

Query: 38  WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97
           +           +P  +Q   + A   H               ++    G GKT L    
Sbjct: 71  YRDLDLTPAVAIEPRDYQQAALAAWTDHDRRG-----------SVVLPTGSGKTFLA--- 116

Query: 98  MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
                     +S + +  +           +++W + L +             +      
Sbjct: 117 --VQAIADASVSTLVVVPTID--------LLNQWHATLTN-------------AFGDQLP 153

Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217
            E  +     H        + +    ++  +      +  DE    P    + I      
Sbjct: 154 HEIGVLGGGSHNVTDITVTTYDSAYRYINEYGDQFGLLVVDEVHHLPAPTYQQIPEMTIA 213

Query: 218 LNPNRFWIMTSNTRRLNGWFYD-----IFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISR 272
                       T   +    D     ++   +++     +       +         ++
Sbjct: 214 PYRLGLTATYERTDGEHNVLEDLIGPVVYEENVDELAGEYLSEYETIHLKVDLTPEERNQ 273

Query: 273 YGLDSDVARIEIL 285
           Y  +  + R  + 
Sbjct: 274 YDDEYQIYRDYLD 286


>gi|95930869|ref|ZP_01313600.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
 gi|95133111|gb|EAT14779.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
          Length = 463

 Score = 39.9 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 53/210 (25%), Gaps = 20/210 (9%)

Query: 82  ISAGR--------GIGKTTLNAWMMLWLI-STRPGMSIICIANSETQLKNTLWAEVSKWL 132
           I AGR        G GKT      +L  +   R  +  + +  +  +L + +  E+ K  
Sbjct: 38  ILAGRDVIGQGKTGSGKTAAFGLGLLQKLNVKRFHVQALVLCPT-RELADQVAKEIRKLA 96

Query: 133 SMLPH-RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
             + + +       +   P     E            + I       E           +
Sbjct: 97  RTIHNIKVLTLCGGMPFGPQLGSLEH---------GAHIIVGTPGRIEEHVRKGALKLDN 147

Query: 192 GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY 251
              +  DEA    ++  +  L    +  P     +  +             +        
Sbjct: 148 LTLLVLDEADRMLEMGFQEALDAIIDQTPQTRQTLLFSATFPRQIESIAGRVMKTPVMVQ 207

Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVAR 281
              T     I   F+E           + R
Sbjct: 208 VEATHDSAVITQHFYEVADDTADRQQALRR 237


>gi|289187585|gb|ADC92353.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 39.9 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
             + +  G+ +            MT+        F        ++ +     +     
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822


>gi|242826326|ref|XP_002488618.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218712436|gb|EED11862.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 1845

 Score = 39.9 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 26/227 (11%), Positives = 65/227 (28%), Gaps = 25/227 (11%)

Query: 26  LSFKNF-VMRFFPW-----GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFK 79
           LS  +F +    P+     G    P  H  +P  WQ E ++ +D                
Sbjct: 751 LSPPDFQLFYAGPYIDRSMGSTRDPRIHDFEPDMWQREVLDQIDA------------RGS 798

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             + A    GKT ++ + +  ++       ++ +A ++  +        +++     +  
Sbjct: 799 LFVVAPTSAGKTFISFYAIKQILEDDNDGILVYVAPTKALVNQVAAEIEARFSKSFNNMP 858

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                  ++H   +          + +  + +     +     ++    +     +  DE
Sbjct: 859 --GKSVWAIHTRDYRINNPTGCQVLITVPHILQIMLLAPSNAKSW----SPRIKRIIFDE 912

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246
                   +  I      L      I  S T      F     +  +
Sbjct: 913 VHCIGQAEDGVIWEQLLLL-APCPIIALSATVGNPEEFRQWLEMAQK 958


>gi|195039987|ref|XP_001990982.1| GH12329 [Drosophila grimshawi]
 gi|193900740|gb|EDV99606.1| GH12329 [Drosophila grimshawi]
          Length = 1010

 Score = 39.9 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 58/207 (28%), Gaps = 22/207 (10%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            +++A RG GK+     + +        ++I   +     L   L+  V K    L ++ 
Sbjct: 275 ISLTAARGRGKSAAL-GLSIAAAVAFGYVNIYVTSPHPENLIT-LFEFVLKGFDGLEYQE 332

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +   +      +   ++  ++  +S+              +            +  DE
Sbjct: 333 HADYTIIRSTNPDYKKAIIRINITRNSRQTIQYIAPSDTHLLNAAD--------LLLIDE 384

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
           A+  P       L    ++       M S         Y+     L      Q+      
Sbjct: 385 AAAIP-------LPLVKKMIGPYLIFMASTING-----YEGTGRSLSLKLISQLQKENNA 432

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILG 286
                  E I  +   D +   I +L 
Sbjct: 433 RPPLKLDESIRYQSNDDIERWLINLLC 459


>gi|195019547|ref|XP_001985005.1| GH14740 [Drosophila grimshawi]
 gi|193898487|gb|EDV97353.1| GH14740 [Drosophila grimshawi]
          Length = 1007

 Score = 39.9 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 58/207 (28%), Gaps = 22/207 (10%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            +++A RG GK+     + +        ++I   +     L   L+  V K    L ++ 
Sbjct: 275 ISLTAARGRGKSAAL-GLSIAAAVAFGYVNIYVTSPHPENLIT-LFEFVLKGFDGLEYQE 332

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +   +      +   ++  ++  +S+              +            +  DE
Sbjct: 333 HADYTIIRSTNPDYKKAIIRINITRNSRQTIQYIAPSDTHLLNAAD--------LLLIDE 384

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
           A+  P       L    ++       M S         Y+     L      Q+      
Sbjct: 385 AAAIP-------LPLVKKMIGPYLIFMASTING-----YEGTGRSLSLKLISQLQKENNA 432

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILG 286
                  E I  +   D +   I +L 
Sbjct: 433 RPPLKLDESIRYQSNDDIERWLINLLC 459


>gi|158851712|gb|ABW82057.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 39.9 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
             + +  G+ +            MT+        F        ++ +     +     
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822


>gi|116494138|ref|YP_805872.1| hypothetical protein LSEI_0585 [Lactobacillus casei ATCC 334]
 gi|116104288|gb|ABJ69430.1| hypothetical protein LSEI_0585 [Lactobacillus casei ATCC 334]
          Length = 808

 Score = 39.9 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 67/206 (32%), Gaps = 11/206 (5%)

Query: 4   LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63
                +K+E  L ++L +   +    N      P  IKG           +Q + +  +D
Sbjct: 3   KKKVMRKIELPLVDLLENKRKIDLLSNEKPFIIPEYIKGNLKHQL---RPYQNQALVNLD 59

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
                 + +         ++ G   GKT + A ++L+L +     + + + N+   +  T
Sbjct: 60  WTQRQPLADYQYNQLLFNMATG--SGKTDVLAALILYLYTEFTYHNFLFVVNTNAVVAKT 117

Query: 124 LWAEV-----SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
               +         S     H   ++  S+       E     + + +        + ++
Sbjct: 118 YDNLLNTASPKYLFSQPLTIHGQRIELRSVTRFPSTPEDGVIYLRLATIQALTNELSETK 177

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTP 204
           E   T+      H + V  DEA    
Sbjct: 178 ENSLTYDDFKA-HKLVVLADEAHHFS 202


>gi|57544898|gb|AAW51414.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 39.9 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
             + +  G+ +            MT+        F        ++ +     +     
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822


>gi|311235518|gb|ADP88371.1| metal dependent phosphohydrolase [Desulfovibrio vulgaris RCH1]
          Length = 745

 Score = 39.9 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 46/164 (28%), Gaps = 7/164 (4%)

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           +    +H      +  P +F   +    G GKT  +    L    T     +I      +
Sbjct: 235 IRKTVLHDCRARASETPGLFSLTV--PTGGGKTLSSMAFALDHAVTHGLRRVIYAIPFTS 292

Query: 119 QLKN--TLWAEVSKWLSMLPHRHWFEMQSLSL---HPSGWYAELLEQSMGIDSKHYTITC 173
            ++    ++++V    ++L H   +  +       +              +         
Sbjct: 293 IIEQNAKVFSDVFGQDNVLEHHCNYRSKDEPEEQGYDKWRGLAAENWDAPVVVTTNVQFF 352

Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217
            +    RP      HN     +  DEA   P    +  L    E
Sbjct: 353 ESLFSNRPSRCRKLHNIARSVIVLDEAQAIPTEYLEPCLYALKE 396


>gi|120586832|ref|YP_961177.1| metal dependent phosphohydrolase [Desulfovibrio vulgaris subsp.
           vulgaris DP4]
 gi|120564246|gb|ABM29989.1| CRISPR-associated helicase, Cas3 family [Desulfovibrio vulgaris
           DP4]
          Length = 745

 Score = 39.9 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 46/164 (28%), Gaps = 7/164 (4%)

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           +    +H      +  P +F   +    G GKT  +    L    T     +I      +
Sbjct: 235 IRKTVLHDCRARASETPGLFSLTV--PTGGGKTLSSMAFALDHAVTHGLRRVIYAIPFTS 292

Query: 119 QLKN--TLWAEVSKWLSMLPHRHWFEMQSLSL---HPSGWYAELLEQSMGIDSKHYTITC 173
            ++    ++++V    ++L H   +  +       +              +         
Sbjct: 293 IIEQNAKVFSDVFGQDNVLEHHCNYRSKDEPEEQGYDKWRGLAAENWDAPVVVTTNVQFF 352

Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217
            +    RP      HN     +  DEA   P    +  L    E
Sbjct: 353 ESLFSNRPSRCRKLHNIARSVIVLDEAQAIPTEYLEPCLYALKE 396


>gi|46562132|ref|YP_009169.1| CRISPR-associated helicase Cas3 domain-containing protein
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|46447669|gb|AAS94335.1| CRISPR-associated helicase Cas3 domain protein [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 702

 Score = 39.9 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 46/164 (28%), Gaps = 7/164 (4%)

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           +    +H      +  P +F   +    G GKT  +    L    T     +I      +
Sbjct: 192 IRKTVLHDCRARASETPGLFSLTV--PTGGGKTLSSMAFALDHAVTHGLRRVIYAIPFTS 249

Query: 119 QLKN--TLWAEVSKWLSMLPHRHWFEMQSLSL---HPSGWYAELLEQSMGIDSKHYTITC 173
            ++    ++++V    ++L H   +  +       +              +         
Sbjct: 250 IIEQNAKVFSDVFGQDNVLEHHCNYRSKDEPEEQGYDKWRGLAAENWDAPVVVTTNVQFF 309

Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217
            +    RP      HN     +  DEA   P    +  L    E
Sbjct: 310 ESLFSNRPSRCRKLHNIARSVIVLDEAQAIPTEYLEPCLYALKE 353


>gi|82940932|dbj|BAE48727.1| unnamed protein product [Dengue virus 3]
          Length = 3390

 Score = 39.9 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
             + +  G+ +            MT+        F        ++ +     +     
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822


>gi|82940928|dbj|BAE48725.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 39.9 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
             + +  G+ +            MT+        F        ++ +     +     
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822


>gi|195428034|ref|XP_002062080.1| GK17342 [Drosophila willistoni]
 gi|194158165|gb|EDW73066.1| GK17342 [Drosophila willistoni]
          Length = 681

 Score = 39.9 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 40/153 (26%), Gaps = 4/153 (2%)

Query: 60  EAVDVHCHSNVNNSNPTIFK-CAISAGRGIGKTTLNAWMMLWLISTRPGMSI--ICIANS 116
            AV            P   +   +SA  G GKT   A  ++ L+S R    +  + +   
Sbjct: 168 RAVIPWILEAHAKPEPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVECKVRALVVLPV 227

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
                   +  +S   S          +   L         L +          +T    
Sbjct: 228 AELALQV-YKVISSLCSKTELEVCLLSKQHRLEDEQEKLLELYKGKYYSKVDIVVTTPGR 286

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209
             +      G        +  DEA    D + +
Sbjct: 287 LVDHLHATKGFCLKSLQFLVIDEADRIMDAVFQ 319


>gi|169634533|ref|YP_001708269.1| exonuclease V, alpha subunit [Acinetobacter baumannii SDF]
 gi|169153325|emb|CAP02436.1| exonuclease V, alpha subunit [Acinetobacter baumannii]
          Length = 583

 Score = 39.9 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 37/149 (24%), Gaps = 16/149 (10%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
            E ++ +                   I+ G G GKT   A ++  L    P + +   A 
Sbjct: 118 EEHLDLLTDPHQRTALQMVTRQSLSIITGGPGTGKTYTLARIIAVLSQAIPHIRVAMAAP 177

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
           +    +                     +Q+    P    + L+   +   S         
Sbjct: 178 TGKAAQRM----------------QEALQNSFNDPKLLESGLMSDELRNQSTQTIHRLLG 221

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTP 204
               +   F          +  DEAS   
Sbjct: 222 MGHSQTPRFNQKQPLPYDVIVVDEASMLD 250


>gi|15227913|ref|NP_181756.1| U5 small nuclear ribonucleoprotein helicase, putative [Arabidopsis
            thaliana]
 gi|2673917|gb|AAB88651.1| putative ATP-dependent RNA helicase [Arabidopsis thaliana]
 gi|330255004|gb|AEC10098.1| U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana]
          Length = 2172

 Score = 39.9 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 19/167 (11%), Positives = 40/167 (23%), Gaps = 16/167 (9%)

Query: 57   EFMEAVDVHCHSNVNNSNPTIFKCA----ISAGRGIGKTTLNAWMMLWLISTRPGM--SI 110
            E +     H +         ++  +    ++A  G GKT    + +L      P     +
Sbjct: 1343 ETLYQDFKHFNPVQTQVFTVLYNTSDNVVVAAPTGSGKTICAEFAILRNHLEGPDSAMRV 1402

Query: 111  ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
            + IA  E   K     +   W           +             LL+  +    +   
Sbjct: 1403 VYIAPLEAIAKE----QFRDWEKKFGKGLGLRV------VELTGETLLDLKLLEKGQIII 1452

Query: 171  ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217
             T   +           +         DE         + +    + 
Sbjct: 1453 STPEKWDALSRRWKQRKYIQQVSLFIVDELHLIGGQGGQVLEVIVSR 1499


>gi|56461630|ref|YP_156911.1| exonuclease V subunit alpha [Idiomarina loihiensis L2TR]
 gi|56180640|gb|AAV83362.1| ATP-dependent exoDNAse (exonuclease V), alpha subunit, superfamily
           I helicase [Idiomarina loihiensis L2TR]
          Length = 647

 Score = 39.9 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 27/244 (11%), Positives = 49/244 (20%), Gaps = 34/244 (13%)

Query: 42  GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101
            KP    ++   WQ                 +    F   I+ G G GKT     ++  L
Sbjct: 167 DKPDGDKAEEINWQRVACAN-----------TVRNRFSV-ITGGPGTGKTYTVVRLLTAL 214

Query: 102 ISTR-----PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
                    P + +   A +         +  S+   +        ++            
Sbjct: 215 QHQTLFLGLPPLRVSLAAPTGKAAARLTESIESELNRLRGDAKLATLKDALDAIKPEGKT 274

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT 216
           L                      +              V  DEAS     +  ++L   T
Sbjct: 275 LHRL---------LGVKPNSRAFKHHADNPLRTD---VVIVDEASMIDIEMMTALLKA-T 321

Query: 217 ELNPNRFWI----MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISR 272
             N     I      ++                  +                    +I  
Sbjct: 322 PKNARLVLIGDKDQLASVEAGAVLGNLCEGADQGHYHTETAQWLQHVADTPVLPAELIDN 381

Query: 273 YGLD 276
            G  
Sbjct: 382 NGEQ 385


>gi|82940930|dbj|BAE48726.1| unnamed protein product [Dengue virus 3]
          Length = 3390

 Score = 39.9 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
             + +  G+ +            MT+        F        ++ +     +     
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822


>gi|317478209|ref|ZP_07937375.1| hypothetical protein HMPREF1007_00491 [Bacteroides sp. 4_1_36]
 gi|316905602|gb|EFV27390.1| hypothetical protein HMPREF1007_00491 [Bacteroides sp. 4_1_36]
          Length = 375

 Score = 39.9 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 34/276 (12%), Positives = 73/276 (26%), Gaps = 40/276 (14%)

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN----SETQLKN 122
              +     +     + + R  GK++L    M  L      + +  I      +E +   
Sbjct: 23  RKQLKELLGSGINVMLISPRRWGKSSLVKVAMDELTQEDKHIRVCFIDAFSIKTEAEFYR 82

Query: 123 TLWAEVSKWLSMLPHRHWFEMQSL------SLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
               EV    +    +   +++        S+       + L   + ++ +  ++     
Sbjct: 83  IFAREVISCAASTLEKRLEDVKQFLKAVSPSITLKSDPTDTLSFDLKLELEEKSVMEILE 142

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDII-NKSILGFFTELNPNRFWIMT-------- 227
             E+     G H    + V  DE      +   KS+ G        +  +          
Sbjct: 143 LPEKIAAAKGIH----LIVCIDEFQQLALLPGYKSMEGKMRSAWQKQQQVSYCFYGSKRH 198

Query: 228 ---------SNTRRLNGWFYDIFNIPLEDWKRYQID--TRTVEGIDSGFHEGIISRYGLD 276
                    SN     G    +  I  E+W  + ++   RT + I     E +       
Sbjct: 199 MMMDIFNNSSNPFYRFGQVLFLQKIKKEEWVPFIVNAFHRTNKEISEQQAEQLCDIVKCH 258

Query: 277 SDVARIEILGQFPQQEVNN------FIPHNYIEEAM 306
           S   +      +                   I+  M
Sbjct: 259 SWYLQQLCYFIWSGTSEKVTDEIIEIRTRQLIDTNM 294


>gi|294675348|ref|YP_003575964.1| ATPase [Prevotella ruminicola 23]
 gi|294473103|gb|ADE82492.1| archaeal ATPase family protein [Prevotella ruminicola 23]
          Length = 374

 Score = 39.9 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 65/250 (26%), Gaps = 21/250 (8%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML-PH 137
             A+ A R IGKT L   +           + +    +   +++ + A  S  L+ L P 
Sbjct: 36  NVALIAPRRIGKTGLIENLYHLKEVQENYYTFLIDIYATKNMEDMVMAMGSAMLASLRPK 95

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF- 196
                 +      S       + +            R       + F    +     +  
Sbjct: 96  GAQIMQKFTGFLSSLRSGISFDPAGNPSWNVEIGDIRMPRTTLEEIFHYIESADKPCIVA 155

Query: 197 NDEASGT---PDIINKSILGFFTELNPNRFWIMTSN--------TRRLNGWFYDIFNIPL 245
            DE       PD   +++L    +   N  +I   +               FY   ++  
Sbjct: 156 IDEFQSVANYPDGHAEALLRTHIQHCRNANFIFAGSQRTMMAEIFNSPARPFYQSASMMN 215

Query: 246 ------EDWKRY-QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFI 297
                 + + ++ Q                ++             ++ + F      +  
Sbjct: 216 LGCISMDKYCQFAQEHFSKAGKSLPADVFQMVYERFEGITWYVQRVMNELFSLTSTGSAC 275

Query: 298 PHNYIEEAMS 307
               I+ A+ 
Sbjct: 276 TVEMIDVAID 285


>gi|263613203|gb|ACY70768.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 39.9 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIIREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTAT-- 1721

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1722 ----------RSEHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|258545085|ref|ZP_05705319.1| probable exonuclease V, alpha subunit [Cardiobacterium hominis ATCC
           15826]
 gi|258519662|gb|EEV88521.1| probable exonuclease V, alpha subunit [Cardiobacterium hominis ATCC
           15826]
          Length = 606

 Score = 39.9 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 18/158 (11%), Positives = 37/158 (23%), Gaps = 30/158 (18%)

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126
             N      +     I+ G G GKT   A ++       P + I   A +    K    +
Sbjct: 113 QQNAIRLARSRRLALINGGPGTGKTYTIARLIHAEQQADPKIRIALAAPTGKAAKRMEES 172

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
             +  +  LP +    +                                   +    +  
Sbjct: 173 LAAAGVQDLPAQTLHRLL------------------------------GIGTDGQARYHM 202

Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
             +     +  DEAS     +  +++            
Sbjct: 203 SRHLPHDLIIIDEASMLSLELAHALIAATATDTRLILL 240


>gi|82940934|dbj|BAE48728.1| unnamed protein product [Dengue virus 3]
          Length = 3390

 Score = 39.9 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
             + +  G+ +            MT+        F        ++ +     +     
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822


>gi|300112918|ref|YP_003759493.1| hypothetical protein Nwat_0200 [Nitrosococcus watsonii C-113]
 gi|299538855|gb|ADJ27172.1| protein of unknown function DUF450 [Nitrosococcus watsonii C-113]
          Length = 997

 Score = 39.9 bits (91), Expect = 0.60,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 53/232 (22%), Gaps = 19/232 (8%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P   QL+ +  +  H   +         +  I    G GK+   AW+   L+    G   
Sbjct: 274 PRYHQLKVVRRLLAHARKSGVGK-----RYLIQHSAGSGKSNSIAWLAHQLVGLEQGGRA 328

Query: 111 I----CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ-SLSLHPSGWYAELLEQSMGID 165
           +     +      L   +   + +++ +       E    L          ++       
Sbjct: 329 LFDSVIVVTDRRVLDKQIRDTIKQFVQVSATVGHAEHSGDLRKFLKVGKKIIITTVQKFP 388

Query: 166 ------SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS---ILGFFT 216
                    +         +   +  G   T  M    +E +   D +      I     
Sbjct: 389 FILDEIGDEHRGAKFAIVIDEAHSSQGGKTTAAMNRVLEETAPYGDEMASVEDKINQIME 448

Query: 217 ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG 268
                      + T        +IF  P          +           + 
Sbjct: 449 SRKMVTNASYFAFTATPKNKTLEIFGEPDPQPDGTVKHSPFHSYTMKQAIQE 500


>gi|324505328|gb|ADY42291.1| ATP-dependent RNA helicase DDX27 [Ascaris suum]
          Length = 688

 Score = 39.9 bits (91), Expect = 0.60,   Method: Composition-based stats.
 Identities = 31/292 (10%), Positives = 71/292 (24%), Gaps = 34/292 (11%)

Query: 7   TDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHC 66
            D   ++   E+++ +E  +SF+ ++    P  +K      F++P   Q   +       
Sbjct: 126 ADSFFDETTSELVLASEPSVSFE-YMNLSRP-MLKAVGACGFTKPTPIQAACI------- 176

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS----IICIANSETQLKN 122
                            A  G GKT      +L  +  +P       ++ +  +      
Sbjct: 177 -----PLALAGRDLCACAATGTGKTAAFMLPILERLLFKPKQKSVTRVLVLVPTRELAMQ 231

Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP- 181
                          R   +   + +       ++  Q   +      +           
Sbjct: 232 VFH----------VTRLLSQFSQVEICLCAGGLDIKAQEAALRLGPDIVIATPGRLIDHL 281

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILG---FFTELNPNRFWIMTSNTRRLNGWFY 238
                        +  DEA    D      +         N        + T ++     
Sbjct: 282 HNAPNFSLHDIEVLVLDEADRMLDEAFADQMKELIRLCSANRQTLLFSATMTDQIEQLAA 341

Query: 239 DIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290
                P+  +     +T T   +   F     +       +    +   FP 
Sbjct: 342 VSLKNPVRIF--INENTETALNLRQEFIRIRENHEHERESIVVALVTRIFPD 391


>gi|289167072|ref|YP_003445339.1| FtsK/SpoIIIE family protein [Streptococcus mitis B6]
 gi|288906637|emb|CBJ21471.1| FtsK/SpoIIIE family protein [Streptococcus mitis B6]
          Length = 440

 Score = 39.9 bits (91), Expect = 0.60,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 59/166 (35%), Gaps = 25/166 (15%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q   ++++D+     VN +        +S G G GK+   ++++L L+  +   ++    
Sbjct: 183 QRREIDSLDIDLGYGVNYNPIKCPHILVSGGTGSGKSVFISFLILELLKRQ--STVYIAD 240

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
              + L +      +K+++  P+       +++        E+ E+   +       +  
Sbjct: 241 PKNSDLGSLSHYFGNKYVATTPN-------NIARIVRIVVEEMQERYQVMRDNFQYGSNF 293

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDE-----ASGTPDIINKSILGFF 215
           +            H    + +  DE     ASGT     + I+   
Sbjct: 294 S-----------EHGFKPICLIIDEMGAFQASGTDKKSKEVIVEVM 328


>gi|237651533|ref|YP_002899004.1| N4 gp68-like protein [Roseophage EE36P1]
 gi|220898165|gb|ACL81422.1| N4 gp68-like protein [Sulfitobacter phage EE36phi1]
          Length = 538

 Score = 39.9 bits (91), Expect = 0.60,   Method: Composition-based stats.
 Identities = 33/297 (11%), Positives = 71/297 (23%), Gaps = 36/297 (12%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           K      RG  KTTL    +   ++    +           + +++   V          
Sbjct: 70  KITNLCARGTAKTTLMMEYLTLYLAMFNKIPGFGPVPGMLYISDSMDNGVKSA-RESIKS 128

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC-RTYSEERPDTFVGPHNTHGMAVFN 197
            ++  + L            E  M   +++      + +  +         N   +    
Sbjct: 129 RYYSSEFLQYWLPESGVRFTENYMEFHNRNGGKFGVKMFGAKSGIRGTKIFNRRPVLAVM 188

Query: 198 D----EASGTPDIINKSILGFFTEL------NPNRFWIMTSNTRRLNGWFYDIFNIPL-- 245
           D    +A        ++I                   I+           Y         
Sbjct: 189 DDLISDADSKSPTAMEAINDTVYSGVQYALDPTRHKMILNGTPFNKEDIVYQAIESGAWQ 248

Query: 246 -EDWKRYQ--------IDTRTVEGIDSGFHEGIISR--YGLDSDVARIEILGQFPQQEVN 294
              W   +              +     + + +             R E++ +    + +
Sbjct: 249 VNVWPVCKEFPCEREEFSGAWEDRFTYDYVKEMYDSAVMEGKEKSFRQELMLR-ITSDES 307

Query: 295 NFIPHNYI--EEAMSREAIDDLYAPLIMGCDIA---GEGGDKTVVVF----RRGNII 342
             I  + I  +  M   +    Y   I   D A    +  D TV+      + GN I
Sbjct: 308 RLIQQDEIGWKSRMDILSNRKHYNFYITT-DFATSSKQTADYTVISVWAYDKDGNWI 363


>gi|206889555|ref|YP_002248708.1| phosphate starvation-inducible protein [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741493|gb|ACI20550.1| phosphate starvation-inducible protein [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 301

 Score = 39.9 bits (91), Expect = 0.60,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 37/123 (30%), Gaps = 14/123 (11%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKT L   M +  + TR    I+ +  +             +    L        + +
Sbjct: 117 GTGKTYLAMAMAIHFLLTRQVSRIVLVRPA------------VEAGEKLGFLPGAIEEKV 164

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
           S +    Y  L    M    +   +  +   E  P  F+     +   +  DEA  T   
Sbjct: 165 SPYLRPLYDALY--DMLDLDRASKLIEKGAIEIAPLAFMRGRTLNDAFIILDEAQNTTTE 222

Query: 207 INK 209
             K
Sbjct: 223 QMK 225


>gi|169237324|ref|YP_001690529.1| RAD25-type DNA repair helicase [Halobacterium salinarum R1]
 gi|167728840|emb|CAP15732.1| RAD25-type DNA repair helicase [Halobacterium salinarum R1]
          Length = 469

 Score = 39.9 bits (91), Expect = 0.60,   Method: Composition-based stats.
 Identities = 22/253 (8%), Positives = 59/253 (23%), Gaps = 42/253 (16%)

Query: 38  WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97
           +           +P  +Q   + A   H               ++    G GKT L    
Sbjct: 71  YRDLDLTPAVAIEPRDYQQAALAAWTDHDRRG-----------SVVLPTGSGKTFLA--- 116

Query: 98  MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
                     +S + +  +           +++W + L +             +      
Sbjct: 117 --VQAIADASVSTLVVVPTID--------LLNQWHATLTN-------------AFGDQLP 153

Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217
            E  +     H        + +    ++  +      +  DE    P    + I      
Sbjct: 154 HEIGVLGGGSHNVTDITVTTYDSAYRYINEYGDQFGLLVVDEVHHLPAPTYQQIPEMTIA 213

Query: 218 LNPNRFWIMTSNTRRLNGWFYD-----IFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISR 272
                       T   +    D     ++   +++     +       +         ++
Sbjct: 214 PYRLGLTATYERTDGEHNVLEDLIGPVVYEENVDELAGEYLSEYETIHLKVDLTPEERNQ 273

Query: 273 YGLDSDVARIEIL 285
           Y  +  + R  + 
Sbjct: 274 YDDEYQIYRDYLD 286


>gi|123464703|ref|XP_001317120.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121899846|gb|EAY04897.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 774

 Score = 39.9 bits (91), Expect = 0.60,   Method: Composition-based stats.
 Identities = 24/201 (11%), Positives = 45/201 (22%), Gaps = 30/201 (14%)

Query: 6   STDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVH 65
                 E ++    +          F+   +     G P   FS    WQ   +   +  
Sbjct: 13  PQSISDESQVLSSTISEMDECGIPKFLQNSYL---SGTPPPAFSTLRPWQRSLLLKAEWQ 69

Query: 66  CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW 125
              N            + A    GKT +        +   P   I+              
Sbjct: 70  LQKNA----------IVLAPTAGGKTLIAEVAFAQALERNPSAKILYCVPFVALATEKY- 118

Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185
                        + F ++  S+    +Y ++    +   S       R +S        
Sbjct: 119 -------------NLFTLRFPSVTVRAYYHDIGAGPLTQRSIGVCTYERAHSLINSSASG 165

Query: 186 GPHNTHGMAVFNDEASGTPDI 206
                    +  DE     D 
Sbjct: 166 KF---DLDLIVIDEFHMLDDN 183


>gi|78045316|ref|YP_361566.1| putative DotB-like type IV secretion system protein [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|78033820|emb|CAJ19819.1| putative DotB-like type IV secretion system protein [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 398

 Score = 39.9 bits (91), Expect = 0.60,   Method: Composition-based stats.
 Identities = 32/282 (11%), Positives = 72/282 (25%), Gaps = 9/282 (3%)

Query: 36  FPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSN-----PTIFKCAISAGRGIGK 90
           F W   G  ++          E  E        ++ +       P      +    G GK
Sbjct: 111 FRWNATGAEIDGSFGISIILRELPEIPPAIDKEDLGDDLYGALYPDDGIVMVCGPTGSGK 170

Query: 91  TTLNAWMMLWLISTRPGMSIICIANSETQ--LKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
           +TL A M+   I+  P      I        + + +    ++  S     H     + ++
Sbjct: 171 STLLAGMIR-DIAENPDSHCHIITYESPVEFVYDKVEKPTTEIESTSIPDHLPNF-AAAI 228

Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208
             S      +     +            S+     +   H+T   A F       P    
Sbjct: 229 RNSLRRDPDIIVVGEMRDGETIGAAILASQTGHVVYGTAHSTSVGATFTRTMQSLPKNEQ 288

Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG 268
           + +LG   +            +          +    E  +R  +     +         
Sbjct: 289 QGMLGGLIDSLRLIICQELVQSTDGKRVALREYLSFGESERRALLTAAMRDPAGVPSVAQ 348

Query: 269 IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310
            ++R    + +     L    + + +  +     E+    + 
Sbjct: 349 QLTRERGQTKLMHARKLFAAGRIKEDVVLRFELAEQTARAQV 390


>gi|114566027|ref|YP_753181.1| CRISPR-associated helicase Cas3 domain-containing protein
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114336962|gb|ABI67810.1| CRISPR-associated helicase, Cas3 family [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 717

 Score = 39.9 bits (91), Expect = 0.60,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 44/174 (25%), Gaps = 13/174 (7%)

Query: 66  CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN--T 123
           C          +F  ++    G GKT  +    L          +I      + ++    
Sbjct: 223 CCRQAAKKEKGLFSLSV--PTGGGKTLSSLEFALRHACKHGMERVIYAVPFTSIIEQNAA 280

Query: 124 LWAEV---SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
           ++ E       L    +  + E ++   +     AE  +  + + +             +
Sbjct: 281 VFREALGDDAVLEHHRNYDFEEDENNPNYKHRLAAENWDAPVIVTTNVQFFESLLA--YK 338

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDI----INKSILGFFTELNPNRFWIMTSNT 230
           P      HN     V  DEA   PD         +                +  
Sbjct: 339 PSRCRKLHNIANSIVILDEAQTLPDRLLLPCLAILEELLLRYGATIVLCTATQP 392


>gi|332851855|ref|ZP_08433758.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter baumannii
           6013150]
 gi|332867446|ref|ZP_08437606.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter baumannii
           6013113]
 gi|332729640|gb|EGJ60976.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter baumannii
           6013150]
 gi|332733986|gb|EGJ65130.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter baumannii
           6013113]
          Length = 587

 Score = 39.9 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 37/149 (24%), Gaps = 16/149 (10%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
            E ++ +                   I+ G G GKT   A ++  L    P + +   A 
Sbjct: 122 EEHLDLLTDPHQRAALQMVTRQSLSIITGGPGTGKTYTLARIIAVLSQAIPHIRVAMAAP 181

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
           +    +                     +Q+    P    + L+   +   S         
Sbjct: 182 TGKAAQRM----------------QEALQNSFNDPKLLESGLMSDELRNQSTQTIHRLLG 225

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTP 204
               +   F          +  DEAS   
Sbjct: 226 MGHSQTPRFNQKQPLPYDVIVVDEASMLD 254


>gi|291535269|emb|CBL08381.1| DNA or RNA helicases of superfamily II [Roseburia intestinalis
           M50/1]
          Length = 827

 Score = 39.9 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 58/194 (29%), Gaps = 34/194 (17%)

Query: 42  GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101
              +    +P   Q+E + A++               K  + A  G+GKT L A      
Sbjct: 209 DTNVRVLYEPRGAQIEALCALEDTRAEGA-------RKALVQAATGVGKTYLAA------ 255

Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
             ++    ++ +A+ E  L     A   K +       +F  +S                
Sbjct: 256 FDSKNYKRVLFVAHREEILNQA--ALSFKNVRNSDDYGFFTGKSK--------------- 298

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221
                     +  T   +   T       +   +  DE     +   + I+ +F    P 
Sbjct: 299 -ENARSVIFASVSTLGRKEYLTEEYFTKDYFDYIVIDEFHHAVNDQYRRIIEYF---EPK 354

Query: 222 RFWIMTSNTRRLNG 235
               +T+   R++G
Sbjct: 355 FLLGLTATPDRMDG 368


>gi|237725012|ref|ZP_04555493.1| DNA repair helicase [Bacteroides sp. D4]
 gi|229436750|gb|EEO46827.1| DNA repair helicase [Bacteroides dorei 5_1_36/D4]
          Length = 747

 Score = 39.9 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 50/167 (29%), Gaps = 20/167 (11%)

Query: 43  KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102
            P   F +P  +Q E          +N   S   +F  A     G GKT  +   +L + 
Sbjct: 270 SPQFPFPEPRPYQKEAF--------NNWKASQKGLFAMA----TGTGKTLTSLNCLLQIY 317

Query: 103 STRPGMSIICIANSETQLKNTLWAEVSK------WLSMLPHRHWFEMQSLSLHPSGWYAE 156
           +       + +  + T ++   W +  K       + +      +  +   +      AE
Sbjct: 318 NKFKFYQALILVPTITLVEQ--WEDECKRFNFSHIIKVSSKNQGWRSEIDDIKLKESLAE 375

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
             E S+         +    S  +    +       M +  DEA   
Sbjct: 376 SDESSLSFIIITTYASFSRESTFKQLMSLSKKIQRQMLLIADEAHNI 422


>gi|283797954|ref|ZP_06347107.1| CRISPR-associated helicase Cas3 domain protein [Clostridium sp.
           M62/1]
 gi|291074253|gb|EFE11617.1| CRISPR-associated helicase Cas3 domain protein [Clostridium sp.
           M62/1]
          Length = 758

 Score = 39.9 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 18/211 (8%), Positives = 56/211 (26%), Gaps = 15/211 (7%)

Query: 77  IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN--TLWAEVSKWLSM 134
           +F+  +    G GKT  +    L   +      +I +    + ++    +++++    ++
Sbjct: 244 LFRLTV--PTGGGKTISSLAFALRHGAEHEMKRVIYVIPYTSIIEQNAKIFSDILGRENV 301

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
           L      + +S        +         +          +    +       HN     
Sbjct: 302 LEDHCNIDYESDEE-LKPLHLAAENWDKPVVVTTNVQFFESLFSNKSSKCRKLHNIADSV 360

Query: 195 VFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTR-----RLNGWFYDIFNIPL 245
           +  DEA   P         ++                +        R +  + ++     
Sbjct: 361 IIFDEAQMLPCEYLRPCIAAMEELLLRYRSTLVLCTATQPALGGLFRKSITWEELCPDRE 420

Query: 246 EDWKRY-QIDTRTVEGIDSGFHEGIISRYGL 275
           E ++ + +     +  I        + +   
Sbjct: 421 EQFQFFKRCQILNLGRIRREELIDRLEQEDQ 451


>gi|193076198|gb|ABO10818.2| exonuclease V alpha subunit [Acinetobacter baumannii ATCC 17978]
          Length = 587

 Score = 39.9 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 37/149 (24%), Gaps = 16/149 (10%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
            E ++ +                   I+ G G GKT   A ++  L    P + +   A 
Sbjct: 122 EEHLDLLTDPHQRAALQMVTRQSLSIITGGPGTGKTYTLARIIAVLSQAIPHIRVAMAAP 181

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
           +    +                     +Q+    P    + L+   +   S         
Sbjct: 182 TGKAAQRM----------------QEALQNSFNDPKLLESGLMSDELRNQSTQTIHRLLG 225

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTP 204
               +   F          +  DEAS   
Sbjct: 226 MGHSQTPRFNQKQPLPYDVIVVDEASMLD 254


>gi|169797387|ref|YP_001715180.1| exonuclease V, alpha subunit [Acinetobacter baumannii AYE]
 gi|213155798|ref|YP_002317843.1| exonuclease V alpha subunit [Acinetobacter baumannii AB0057]
 gi|215484827|ref|YP_002327062.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter baumannii
           AB307-0294]
 gi|301345351|ref|ZP_07226092.1| exonuclease V, alpha subunit [Acinetobacter baumannii AB056]
 gi|301512606|ref|ZP_07237843.1| exonuclease V, alpha subunit [Acinetobacter baumannii AB058]
 gi|301594569|ref|ZP_07239577.1| exonuclease V, alpha subunit [Acinetobacter baumannii AB059]
 gi|169150314|emb|CAM88211.1| exonuclease V, alpha subunit [Acinetobacter baumannii AYE]
 gi|213054958|gb|ACJ39860.1| exonuclease V alpha subunit [Acinetobacter baumannii AB0057]
 gi|213986255|gb|ACJ56554.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter baumannii
           AB307-0294]
          Length = 583

 Score = 39.9 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 37/149 (24%), Gaps = 16/149 (10%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
            E ++ +                   I+ G G GKT   A ++  L    P + +   A 
Sbjct: 118 EEHLDLLTDPHQRAALQMVTRQSLSIITGGPGTGKTYTLARIIAVLSQAIPHIRVAMAAP 177

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
           +    +                     +Q+    P    + L+   +   S         
Sbjct: 178 TGKAAQRM----------------QEALQNSFNDPKLLESGLMSDELRNQSTQTIHRLLG 221

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTP 204
               +   F          +  DEAS   
Sbjct: 222 MGHSQTPRFNQKQPLPYDVIVVDEASMLD 250


>gi|126640436|ref|YP_001083420.1| exonuclease V alpha subunit [Acinetobacter baumannii ATCC 17978]
          Length = 516

 Score = 39.9 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 37/149 (24%), Gaps = 16/149 (10%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
            E ++ +                   I+ G G GKT   A ++  L    P + +   A 
Sbjct: 51  EEHLDLLTDPHQRAALQMVTRQSLSIITGGPGTGKTYTLARIIAVLSQAIPHIRVAMAAP 110

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
           +    +                     +Q+    P    + L+   +   S         
Sbjct: 111 TGKAAQRM----------------QEALQNSFNDPKLLESGLMSDELRNQSTQTIHRLLG 154

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTP 204
               +   F          +  DEAS   
Sbjct: 155 MGHSQTPRFNQKQPLPYDVIVVDEASMLD 183


>gi|241667544|ref|ZP_04755122.1| DNA/RNA helicase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254876089|ref|ZP_05248799.1| DNA/RNA helicase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842110|gb|EET20524.1| DNA/RNA helicase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 912

 Score = 39.9 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 50/185 (27%), Gaps = 35/185 (18%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P++ Q + +E +D       N       K  I +  G GKT L+A    + ++       
Sbjct: 188 PNKVQQDALENLDRLRQQGKN-------KSLIISATGTGKTFLSA----FDVAKVKPKRC 236

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + I +                            ++           L    +   + +  
Sbjct: 237 LFIVHRTNIAIK-------------------AKETFEKVIRDKTLGLYTGEIKDPADYLF 277

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
            T +T   + P T           +  DE         +S     +   P     MT+  
Sbjct: 278 ATVQTL--KNPQTLASFETNEFDYIIVDE---VHHAEAQSYKKVLSHFKPKFLLGMTATP 332

Query: 231 RRLNG 235
            R + 
Sbjct: 333 ERSDN 337


>gi|219111171|ref|XP_002177337.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411872|gb|EEC51800.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1589

 Score = 39.9 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 17/140 (12%), Positives = 34/140 (24%), Gaps = 2/140 (1%)

Query: 80   CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
              + A  G GKT +    +L +    P    + IA  ++  +  L     +  S      
Sbjct: 960  VLLGAPTGSGKTIVAELALLRMKRIFPKGICVYIAPLKSLARERLKEWKIRLGSAPLRWK 1019

Query: 140  WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY--SEERPDTFVGPHNTHGMAVFN 197
              E+   + H  G            +               E  +            +  
Sbjct: 1020 ILELSGDTHHDQGVVESADVLVCTPEKWDLISRGWRSYVKAEASENAGKAFVKRVKLLVL 1079

Query: 198  DEASGTPDIINKSILGFFTE 217
            DE     +     +    + 
Sbjct: 1080 DEVHLLGEERGAVLEAIVSR 1099


>gi|147801232|emb|CAN75572.1| hypothetical protein VITISV_009507 [Vitis vinifera]
          Length = 489

 Score = 39.9 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 46/166 (27%), Gaps = 24/166 (14%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGR--------GIGKTTLNAWMMLWLISTRPGMS 109
            M+ +  H ++            A+ +GR        G GKT   A  M+     +P + 
Sbjct: 134 IMKDIXFHEYTRPTFIQAQAMPVAL-SGRDLLGCAETGSGKTAAFAIPMIQHCLAQPPVR 192

Query: 110 ------IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
                  + +A +          E+++ +          + S           + EQ   
Sbjct: 193 RGDGPLALVLAPT---------RELAQQIEKEVKAFSRSLDSFRTAIVVGGTNISEQRSE 243

Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209
           + +    +                  +    V  DEA    D+  +
Sbjct: 244 LRAGVNIVVATPGRFIHHLQEGNTSLSRISFVVLDEADRMLDMGFE 289


>gi|120603537|ref|YP_967937.1| PhoH family protein [Desulfovibrio vulgaris DP4]
 gi|120563766|gb|ABM29510.1| PhoH family protein [Desulfovibrio vulgaris DP4]
          Length = 398

 Score = 39.9 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 64/224 (28%), Gaps = 15/224 (6%)

Query: 32  VMRFFPWGIKGKPLEHFSQPH--RWQLEFMEAVDVHCHSN---VNNSNPTIFKCAISAGR 86
           V   F W            P    WQ E  +      H N       +P I   +I +  
Sbjct: 148 VPNCFRWENGQPVFHGPDGPRAVTWQHEVWKVAPRSVHQNLAFELMLHPGIDIVSIQSEA 207

Query: 87  GIGKTTLNAWMMLWLISTR---PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           G GKT L     L L+  R   P   I  +           +        M P+  + + 
Sbjct: 208 GYGKTFLALAAALHLVFERKDTPYRKIYLVKPVVEIGARMGFLPGDIEEKMHPYIRYVQD 267

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
             L LH               ++ +  +  + + E +P  +V   N     V  DE    
Sbjct: 268 LLLKLHD---LRPANRVFQSAEAGNMKLNPKRF-EIQPIAYVRGMNLENAVVIIDEMQNL 323

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
                       T +          +TR+++  + +  N  L  
Sbjct: 324 SRNE---ARALLTRMGEGVKCFCLGDTRQVDNQYLNESNNGLNW 364


>gi|225691000|gb|ACO06188.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 39.9 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 45/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        +  +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDKERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|195456668|ref|XP_002075234.1| GK16915 [Drosophila willistoni]
 gi|194171319|gb|EDW86220.1| GK16915 [Drosophila willistoni]
          Length = 1013

 Score = 39.9 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 63/207 (30%), Gaps = 22/207 (10%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            +++A RG GK+     + +        +++   +     L   L+  V K    L ++ 
Sbjct: 277 MSLTAARGRGKSAAL-GLAISAAIAFGYVNVYVTSPHPENLIT-LFEFVLKGFDALEYQE 334

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +   +    + +   ++  ++  +S+              +            +  DE
Sbjct: 335 HADYTIIRSTNADYKKAIIRINITRNSRQTIQYIAPSDTHLLNAAD--------LLLIDE 386

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
           A+  P  + K +LG +       F   T N        Y+     L      Q+      
Sbjct: 387 AAAIPLPLVKKMLGPYL-----IFMASTIN-------GYEGTGRSLSLKLISQLQKENNA 434

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILG 286
                  E I  +   D +   I +L 
Sbjct: 435 RPPLKLEESIRYQENDDIERWLINLLC 461


>gi|19113352|ref|NP_596560.1| ATP-dependent RNA helicase Slh1 [Schizosaccharomyces pombe 972h-]
 gi|18202096|sp|O60072|MUG81_SCHPO RecName: Full=Putative helicase mug81; AltName: Full=Meiotically
            up-regulated gene 81 protein
 gi|3080535|emb|CAA18663.1| ATP-dependent RNA helicase Slh1 [Schizosaccharomyces pombe]
          Length = 1935

 Score = 39.9 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 20/182 (10%), Positives = 44/182 (24%), Gaps = 19/182 (10%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTR-PGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
               + A  G GKT + A +  W      P   ++ IA  +  +K  +     + +  +  
Sbjct: 1152 NIFVGAPTGSGKT-MAAELATWRALHNYPKSKVVYIAPMKALVKERVKDWGHRLVEPMGI 1210

Query: 138  RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
                E+   +                 +            +   D            +  
Sbjct: 1211 S-MIELTGDTNPDVKAVTNANIIITTPEKWDGITRSWKSRKYVQD---------VSLIIL 1260

Query: 198  DEAS-------GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250
            DE            ++I   +    ++ N     +  S          +  NI    +  
Sbjct: 1261 DEIHLLGSDRGPVLEMIVSRMNYVASQTNKKVRVLGLSTAVANANDLANWLNIRDGLFNF 1320

Query: 251  YQ 252
              
Sbjct: 1321 RH 1322


>gi|325923766|ref|ZP_08185383.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
 gi|325545764|gb|EGD17001.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
          Length = 539

 Score = 39.9 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 49/191 (25%), Gaps = 14/191 (7%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
              +     Q     AV  H   +            +    G GKT     +ML  +   
Sbjct: 31  AGLTGFRLPQRAAAFAVLSHLDISPAKPA------IVVMPTGTGKTDTIFALMLAGLF-- 82

Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
                + +  S+           S            ++ S  +H +   +  L+ S    
Sbjct: 83  --KRTLLVVPSDALRSQMSERLESLSTLRQIEVVTDQLLSPKVHLAAGLSGALDLSAIEA 140

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225
           +     T  T +  +PD            V  DEA        + I       +      
Sbjct: 141 ANVTVATPDTLALLQPDALRQVMGL-FTHVVFDEAHHVVADTWERIRAA---ADGKPTLY 196

Query: 226 MTSNTRRLNGW 236
            T+   RL+  
Sbjct: 197 FTATPFRLDDQ 207


>gi|255951308|ref|XP_002566421.1| Pc22g25350 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211593438|emb|CAP99823.1| Pc22g25350 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1109

 Score = 39.9 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 29/252 (11%), Positives = 68/252 (26%), Gaps = 37/252 (14%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              ++   G+GKT + A +ML          I+ +A ++          VS+ +S     
Sbjct: 311 NLLVALPTGLGKTFIAATIMLNWFRWTKDSQIVFVAPTK--------PLVSQQVSACLDI 362

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                   ++  +G  +  +        + + +T +T   +       P     + +  D
Sbjct: 363 AGIPRSESTM-LTGGASPGIRAEEWKSKRVFFMTPQTLINDLKTGIADP--KRIVLLVVD 419

Query: 199 EASGTPDIINKS-ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257
           EA           ++ F    N +   +  + T                          +
Sbjct: 420 EAHRATGAYAYVEVVKFLRRFNNSFRVLALTATPGST--------------------VES 459

Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILGQFP-----QQEVNNFIPHNYIEEAMSREAID 312
           V+ +  G     +     +S   R  +  +       +         + +  A+      
Sbjct: 460 VQAVIDGLDIARVEIRTENSIDIRDYVHARNIEIETFENSDEMIFCMDLMSAALQPLLDQ 519

Query: 313 DLYAPLIMGCDI 324
                   G D 
Sbjct: 520 LRTINAYWGRDP 531


>gi|9758045|dbj|BAB08508.1| DNA excision repair cross-complementing protein [Arabidopsis
           thaliana]
          Length = 754

 Score = 39.9 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 50/171 (29%), Gaps = 21/171 (12%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
               L+  +QP  +Q + +  +  +  +             +    G GK+     ++  
Sbjct: 260 LDMELKPHAQPRPYQEKSLSKMFGNGRARSG--------IIVLPC-GAGKS-----LVGV 305

Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
             + R   S +C+A +   +    WA   K  S +         S S       A ++  
Sbjct: 306 SAAARIKKSCLCLATNAVSVDQ--WAYQFKLWSTIKDDQICRFTSDSKERFRGNAGVVVT 363

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211
           +               SEE         N     +  DE    P  + + +
Sbjct: 364 TYN-----MIAFGGKRSEEAEKIIEEMRNREWGLLLMDEVHVVPAHMFRKV 409


>gi|18422089|ref|NP_568591.1| XPB2; ATP binding / ATP-dependent DNA helicase/ ATP-dependent
           helicase/ DNA binding / helicase/ hydrolase/ nucleic
           acid binding [Arabidopsis thaliana]
 gi|57013267|sp|Q9FUG4|XPB2_ARATH RecName: Full=DNA repair helicase XPB2; AltName: Full=ERCC3 homolog
           2; AltName: Full=RAD25 homolog 2; Short=AtXPB2; AltName:
           Full=XPB homolog 2
 gi|11037022|gb|AAG27465.1|AF308595_1 putative DNA repair protein and transcription factor [Arabidopsis
           thaliana]
 gi|47606402|gb|AAT36214.1| putative DNA repair and transcription factor XBP2 [Arabidopsis
           thaliana]
 gi|332007286|gb|AED94669.1| DNA repair helicase XPB2 [Arabidopsis thaliana]
          Length = 766

 Score = 39.9 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 50/171 (29%), Gaps = 21/171 (12%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
               L+  +QP  +Q + +  +  +  +             +    G GK+     ++  
Sbjct: 272 LDMELKPHAQPRPYQEKSLSKMFGNGRARSG--------IIVLPC-GAGKS-----LVGV 317

Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
             + R   S +C+A +   +    WA   K  S +         S S       A ++  
Sbjct: 318 SAAARIKKSCLCLATNAVSVDQ--WAYQFKLWSTIKDDQICRFTSDSKERFRGNAGVVVT 375

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211
           +               SEE         N     +  DE    P  + + +
Sbjct: 376 TYN-----MIAFGGKRSEEAEKIIEEMRNREWGLLLMDEVHVVPAHMFRKV 421


>gi|188586603|ref|YP_001918148.1| type III restriction protein res subunit [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179351290|gb|ACB85560.1| type III restriction protein res subunit [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 1082

 Score = 39.9 bits (91), Expect = 0.64,   Method: Composition-based stats.
 Identities = 18/162 (11%), Positives = 42/162 (25%), Gaps = 14/162 (8%)

Query: 40  IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99
              +    +     +Q E ++A++                  I+   G GKT +   ++ 
Sbjct: 362 ELKEEPLDYLGLRYYQEEAIKAIEKGLEEG-------RQSLLIAMATGTGKTRMAIGLIY 414

Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159
            L+ +R    ++ + +     +N L  +            +     +        A    
Sbjct: 415 RLVKSRRFKRVLFLVD-----RNALGKQAENAFKDSKLESFNSFTEI-FELQSLKAPNPN 468

Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
               +         R      P+            +  DEA 
Sbjct: 469 PETKVHISTVQGMMRRIYYNDPEKDKPTV-DQYDCIVVDEAH 509


>gi|119489004|ref|ZP_01621939.1| PhoH-like protein [Lyngbya sp. PCC 8106]
 gi|119454960|gb|EAW36103.1| PhoH-like protein [Lyngbya sp. PCC 8106]
          Length = 317

 Score = 39.9 bits (91), Expect = 0.64,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 46/148 (31%), Gaps = 17/148 (11%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKT L A + +  + +     +I    +             +    L        Q +
Sbjct: 137 GTGKTYLAAIIAVQALLSDQYERLILTRPA------------VEAGERLGFLPGDLQQKV 184

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
           + +    Y  L    +    K   +  R   E  P  ++     +   V  DEA  T   
Sbjct: 185 NPYLRPLYDALY--ELIDPEKTANLMERGIIEVAPLAYMRGRTLNNAFVILDEAQNTTPA 242

Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLN 234
             K +    T L      ++T +T + +
Sbjct: 243 QMKMV---LTRLGFRSRMVVTGDTTQTD 267


>gi|148653717|ref|YP_001280810.1| type III restriction enzyme, res subunit [Psychrobacter sp. PRwf-1]
 gi|148572801|gb|ABQ94860.1| type III restriction enzyme, res subunit [Psychrobacter sp. PRwf-1]
          Length = 946

 Score = 39.9 bits (91), Expect = 0.64,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 59/193 (30%), Gaps = 33/193 (17%)

Query: 43  KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102
             L     P++ Q E ++ +     S  N       K  I +  G GKT L+A    + +
Sbjct: 209 TALNQPVTPNQMQSEALKNLSDLRKSGKN-------KALIISATGTGKTYLSA----FDV 257

Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
                 + + I +  T  +  L     K L        F  QS  L     ++ +   S 
Sbjct: 258 QQYQPKTFLFIVHRRTIAEEAL-KTFRKLLGSKISMGLFSGQSKDLDCDYLFSTVQTIS- 315

Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222
                            + +     +  H   +  DE         K+IL +F       
Sbjct: 316 -----------------KQENLKLFNQQHFDYIVIDETHRAGAQSYKAILDYFKPG---F 355

Query: 223 FWIMTSNTRRLNG 235
              MT+   R +G
Sbjct: 356 LLGMTATPERTDG 368


>gi|150397042|ref|YP_001327509.1| hypothetical protein Smed_1839 [Sinorhizobium medicae WSM419]
 gi|150028557|gb|ABR60674.1| protein of unknown function DUF264 [Sinorhizobium medicae WSM419]
          Length = 477

 Score = 39.9 bits (91), Expect = 0.64,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 66/278 (23%), Gaps = 29/278 (10%)

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML---------WLISTRPGMSIICIA--N 115
               + +  T  +    AG  +GKT   A             W    R    +  +A   
Sbjct: 47  QREFHAAGATFRERLFMAGNQLGKTLAGAAEAAMHLTGRYPEWWQGRRFDRPVAMLAGSE 106

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
           S    ++ +   +   +    +   +    +              S  +DS         
Sbjct: 107 SYELTRDGVQRLL---IGPPLNEDEWGTGFVPKATIQATTRRSGASGALDSVTVRHVAGG 163

Query: 176 YSEERPDTFVGPHNTH----GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
            S      +              V+ DE    P+ +     G            +T    
Sbjct: 164 ASTLLFKAYEQGRAKWQANTVDYVWFDEEP--PEDVY--FEGITRTNATRGSIAVTFTPL 219

Query: 232 RLNGWFYDIF-NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290
           +        +      D +   +     E         II  Y      AR +     P 
Sbjct: 220 KGLSAVVARYLMEKSADREVTTMTIEDAEHYTPEERRRIIDSYPAHEREARTKG---VPA 276

Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPLIM-GCDIAGE 327
                  P    EE++  +  D     + + G D   +
Sbjct: 277 LGSGRIFP--VTEESIRADPFDIPKHWVQIGGLDFGWD 312


>gi|260062485|ref|YP_003195565.1| ATP-dependent exoDNAse [Robiginitalea biformata HTCC2501]
 gi|88784050|gb|EAR15220.1| ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase
           superfamily I member [Robiginitalea biformata HTCC2501]
          Length = 479

 Score = 39.9 bits (91), Expect = 0.64,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 43/173 (24%), Gaps = 41/173 (23%)

Query: 43  KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR-GIGKTTLNAWMMLWL 101
              +   +P R Q   +  +         +      +  +  G  G GKTTL   ++   
Sbjct: 13  LEEKFPHEPTRNQERALRQLSDFIIGAHTD------RIFLLKGYAGTGKTTLLGTLI--- 63

Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
                                 LW    K + M P     ++ S   +   +        
Sbjct: 64  --------------------TNLWHSKKKAVLMAPTGRAAKVMSTYTNSRAYTIHRQIYI 103

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF 214
              +           S     T     + +      DEAS  PD    +  G 
Sbjct: 104 PKKE----------RSGGVRFTLAPNRHRN-TIFIVDEASMIPDSPVSTAKGS 145


>gi|328772256|gb|EGF82294.1| hypothetical protein BATDEDRAFT_34342 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 741

 Score = 39.9 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 40/153 (26%), Gaps = 13/153 (8%)

Query: 87  GIGKTTLNAWMMLWLISTRPG----MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
           G GKT      ++  +  RP       ++ +  +             +  S+      F 
Sbjct: 234 GSGKTAAFIIPIVERLLFRPKNDATTRVLILVPTRELG--------VQCQSVAISISKFT 285

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
             S  L   G   +  E  + +       T     +   ++           +  DEA  
Sbjct: 286 DISTCLCVGGLPTKTQEAELRLRPDIIIATPGRLIDHIHNSPSFF-LDAIDILVIDEADR 344

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
             D    + L    +  P     M  +    + 
Sbjct: 345 ILDDGFDAELNEIIKHTPRTRQTMLFSATMTDN 377


>gi|170058205|ref|XP_001864819.1| activating signal cointegrator 1 complex subunit 3 [Culex
           quinquefasciatus]
 gi|167877399|gb|EDS40782.1| activating signal cointegrator 1 complex subunit 3 [Culex
           quinquefasciatus]
          Length = 1036

 Score = 39.9 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 18/167 (10%), Positives = 40/167 (23%), Gaps = 21/167 (12%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
           + F Q +  Q +   AV                   + A  G GKTT+  + +L ++   
Sbjct: 401 DRFPQFNPIQTQVFNAVYNSED-----------NVFVGAPTGSGKTTIAEFAVLRMLQQN 449

Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
           P   ++ + + +   +         W         F                 +  +   
Sbjct: 450 PHGRVVYLVSRDALAELI----FMDWHQK------FGQNLGCKVVKLTGETGTDLKLIAK 499

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212
            +    T   +           +  +      DE           + 
Sbjct: 500 GQIIVTTADKWDILSRRWKQRKNVQNIQLFIVDELQLIGGEEGPVLE 546


>gi|158851714|gb|ABW82058.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 39.9 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADVFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|46578858|ref|YP_009666.1| phoH-like protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|46448270|gb|AAS94925.1| phoH-related protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|311232721|gb|ADP85575.1| PhoH family protein [Desulfovibrio vulgaris RCH1]
          Length = 398

 Score = 39.9 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 65/224 (29%), Gaps = 15/224 (6%)

Query: 32  VMRFFPWGIKGKPLEHFSQPH--RWQLEFMEAVDVHCHSN---VNNSNPTIFKCAISAGR 86
           V   F W            P    WQ E  +      H N       +P I   +I +  
Sbjct: 148 VPNCFRWENGQPVFHGPDGPRAVTWQHEVWKVAPRSVHQNLAFELMLHPGIDIVSIQSEA 207

Query: 87  GIGKTTLNAWMMLWLISTR---PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           G GKT L     L L+  R   P   I  +           +        M P+  + + 
Sbjct: 208 GYGKTFLALAAALHLVFERKDTPYRKIYLVKPVVEIGARMGFLPGDIEEKMHPYIRYVQD 267

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
             L LH              +++ +  +  + + E +P  +V   N     V  DE    
Sbjct: 268 LLLKLHD---LRPANRVFQSVEAGNMKLNPKRF-EIQPIAYVRGMNLENAVVIIDEMQNL 323

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
                       T +          +TR+++  + +  N  L  
Sbjct: 324 SRNE---ARALLTRMGEGVKCFCLGDTRQVDNQYLNESNNGLNW 364


>gi|54023354|ref|YP_117596.1| hypothetical protein nfa13870 [Nocardia farcinica IFM 10152]
 gi|54014862|dbj|BAD56232.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 926

 Score = 39.9 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 55/206 (26%), Gaps = 25/206 (12%)

Query: 17  EMLMHAECVLSF-KNFVMRFFPWG--IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNS 73
             L+   C+       +   F WG  I   P    + P    LE ++ +      +    
Sbjct: 211 TDLLALLCIPDPQIAHLAGGFDWGVPIAHVPSLASTVPR---LEILDRLATAIELDPAAR 267

Query: 74  NPTIFKCAISAG-RGIGKTTLNAWMMLWLISTRP-----GMSIICIANSETQLKNTLWAE 127
           +PT    AI+AG  G GK+TL A       +              +A    Q+++ L   
Sbjct: 268 SPT---IAIAAGSTGTGKSTLAADYCHINYNRYEFICWIDSRDAGLAE--AQVRDALLRL 322

Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187
               +            +L  H   W       S     + Y  +    S     T    
Sbjct: 323 TGSVVKPGADVAGPFCTALGRHRGPWLLVFDGASNPAVIEKYVPSAGHGSVIITTT---- 378

Query: 188 HNTHGMAVFNDEASGTPDIINKSILG 213
                   +   A         +   
Sbjct: 379 ----NSLGWWTSAHRIDVEAFTTAEA 400


>gi|255730915|ref|XP_002550382.1| DNA repair protein RAD16 [Candida tropicalis MYA-3404]
 gi|240132339|gb|EER31897.1| DNA repair protein RAD16 [Candida tropicalis MYA-3404]
          Length = 855

 Score = 39.9 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 55/209 (26%), Gaps = 12/209 (5%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G+GKT     + +   + RP + +                E+ K       +      + 
Sbjct: 274 GMGKTIQTIGLFMHDRTKRPNLVVGPTVALMQ-----WKNEIEKHTEPGSLKVLLYHGAG 328

Query: 147 SL----HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
                   S +   L   S+                         HN     V  DEA  
Sbjct: 329 RSNNVADLSDYDVILTSYSVLESVYRKQNYGFRRKAGLVKEESALHNIPFYRVILDEAHN 388

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNT--RRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
             D  + +     +ELN  + W +T      R+   +  I  + L+ +  Y       + 
Sbjct: 389 IKDRNSNTSKAA-SELNTQKRWCLTGTPLQNRIGEMYSLIRYMKLDPFHLYFCTKCDCKS 447

Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQFP 289
               F +G    +     +        F 
Sbjct: 448 THWKFSDGRRCDHCQHPPMQHTNFFNHFM 476


>gi|295674415|ref|XP_002797753.1| ATP-dependent RNA helicase DBP3 [Paracoccidioides brasiliensis
           Pb01]
 gi|226280403|gb|EEH35969.1| ATP-dependent RNA helicase DBP3 [Paracoccidioides brasiliensis
           Pb01]
          Length = 486

 Score = 39.9 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 28/256 (10%), Positives = 52/256 (20%), Gaps = 34/256 (13%)

Query: 31  FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
           F            PLE+FS+P   Q            S               A  G GK
Sbjct: 73  FSYLPSDSKELYGPLENFSKPTPIQ------------SVSWPFLFAGRDVIGVAETGSGK 120

Query: 91  TTLNAWMMLWLISTRPGMS------IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
           T       +  +    G         + I  +             + +   P+       
Sbjct: 121 TLAFGVPCIRKVLEINGPRSSSRISAVIITPTRELATQIY----DQLMKFTPNNVGIAC- 175

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                   +     +       K   +   T   +               +  DEA    
Sbjct: 176 -------IYGGASKDDQRRALKKASVVVATTGRLKDFQGDESLRLDKVKYLVLDEADRML 228

Query: 205 DIINKS----ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
           D   +     I+G        +  + T+          D F           + +     
Sbjct: 229 DKGFEQDIKDIVGAMPSSKKRQTVMFTATWPISVRKLADTFMKDQVMITIGDLSSDIRAN 288

Query: 261 IDSGFHEGIISRYGLD 276
                   ++     +
Sbjct: 289 TRIKQIVEVLKPEDKE 304


>gi|196007514|ref|XP_002113623.1| hypothetical protein TRIADDRAFT_26257 [Trichoplax adhaerens]
 gi|190584027|gb|EDV24097.1| hypothetical protein TRIADDRAFT_26257 [Trichoplax adhaerens]
          Length = 642

 Score = 39.9 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 17/157 (10%), Positives = 48/157 (30%), Gaps = 12/157 (7%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              ++   G+GKT + A +M       P   ++ +A ++          V++      + 
Sbjct: 45  NTLVTLPTGLGKTFIAAVVMYNFFRWYPNGKVVFMAPTK--------PLVAQQEEACYN- 95

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                +  ++  +G       + +    + + +T +    +             + +  D
Sbjct: 96  VTGIPRDTTIRLTGTMNPDKRRQVWQSKRVFFLTPQVLQNDL--NRETCCANDIVCLVVD 153

Query: 199 EAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
           EA     +     ++        N   +  S T   +
Sbjct: 154 EAHRALGNHAYCQVIRGLCNYTRNFRVLALSATPGDD 190


>gi|169603375|ref|XP_001795109.1| hypothetical protein SNOG_04697 [Phaeosphaeria nodorum SN15]
 gi|160706381|gb|EAT88457.2| hypothetical protein SNOG_04697 [Phaeosphaeria nodorum SN15]
          Length = 1275

 Score = 39.9 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 52/157 (33%), Gaps = 12/157 (7%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              ++   G+GKT + A +ML          I+ +A ++          V++ +    H 
Sbjct: 320 NLLVALPTGLGKTFIAATIMLNWYRWTKDSQIVFVAPTK--------PLVAQQIDACFHI 371

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                   ++  +G  +  L        + + +T +T   +    +  P     + +  D
Sbjct: 372 AGIPRSQTTM-LTGGVSPALRSEEWKSKRVFFMTPQTLLNDLKHGYADP--KKLVLLVVD 428

Query: 199 EASGTPDIINKS-ILGFFTELNPNRFWIMTSNTRRLN 234
           EA           ++ F    N +   +  + T   N
Sbjct: 429 EAHRATGAYAYVEVVSFLRRFNQSFRVLALTATPGAN 465


>gi|15614358|ref|NP_242661.1| arsenical pump-driving ATPase [Bacillus halodurans C-125]
 gi|10174413|dbj|BAB05514.1| arsenical pump-driving ATPase [Bacillus halodurans C-125]
          Length = 313

 Score = 39.9 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 43/148 (29%), Gaps = 11/148 (7%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G+GK+T  A    W  + R   +++   +    L +    E+          + F  +  
Sbjct: 17  GVGKSTSAASFA-WRCAERGEKTLLISTDPAHNLGDLFHTEIGAKHKK-ITDNLFATEID 74

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRT----YSEERPDTFVGPHNTHGMAVFNDEASG 202
               +  Y + ++ ++    K   +         +   P            ++  DE   
Sbjct: 75  PEQETRRYIQSVKDNLRGMVKSTMLDEVNRQIDAAAATPGADEAAMFNAISSIVLDEQGT 134

Query: 203 TPDIINKSI-----LGFFTELNPNRFWI 225
              ++  +      +   T       WI
Sbjct: 135 YDKLVFDTAPTGHTIRLLTLPEMMGVWI 162


>gi|255072719|ref|XP_002500034.1| dead box helicase [Micromonas sp. RCC299]
 gi|226515296|gb|ACO61292.1| dead box helicase [Micromonas sp. RCC299]
          Length = 1778

 Score = 39.9 bits (91), Expect = 0.66,   Method: Composition-based stats.
 Identities = 17/154 (11%), Positives = 36/154 (23%), Gaps = 9/154 (5%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           +    G+GKT + A +M       P   ++ +A +           V +  +   +    
Sbjct: 316 VCLPTGLGKTLIAAVVMYNFYRWFPQGKVVFLAPTR--------PLVDQQKAACSNICGI 367

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
             +           +                C   + E             + V  DEA 
Sbjct: 368 PTEDTCTMMGSTKKDESGTRRTFWRTKRVFFCTPQTMENDINSSVCPANEVVCVVIDEAH 427

Query: 202 -GTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
               +      +    +       +  S T    
Sbjct: 428 RAKGNHSYVGCIRMLWDRGVKFRTLALSATPGRT 461


>gi|19483918|gb|AAH25182.1| Dna2 protein [Mus musculus]
          Length = 800

 Score = 39.9 bits (91), Expect = 0.66,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 54/204 (26%), Gaps = 18/204 (8%)

Query: 4   LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63
           + STD    + L E+++       F  ++    P   K          ++ Q + M+ V 
Sbjct: 321 MESTDPS--KRLRELIIDFREP-QFIAYLSSVLPHDAKDTVANILKGLNKPQRQAMKRV- 376

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
                         +   +    G GKTT    ++  L +   G S++  + + + + N 
Sbjct: 377 ---------LLSKDYTLIVGMP-GTGKTTTICALVRILSAC--GFSVLLTSYTHSAVDNI 424

Query: 124 LWAE--VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
           L            L   H                     S+    + Y       +    
Sbjct: 425 LLKLAKFKVGFLRLGQSHKVHPDIQKFTEEEICRSRSIASLAHLEELYNSHPIVATTCMG 484

Query: 182 DTFVGPHNTHGMAVFNDEASGTPD 205
                           DEAS    
Sbjct: 485 INHPIFSRKTFDFCIVDEASQISQ 508


>gi|291386275|ref|XP_002710075.1| PREDICTED: activating signal cointegrator 1 complex subunit 3-like 1
            [Oryctolagus cuniculus]
          Length = 2137

 Score = 39.9 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 45/161 (27%), Gaps = 15/161 (9%)

Query: 54   WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +Q +F     +     + V NS+  +F   + A  G GKT    + +L ++        +
Sbjct: 1322 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1378

Query: 112  CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             I   E   +        K+   L  +        S          +  S     + + I
Sbjct: 1379 YITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIIS---TPEKWDI 1435

Query: 172  TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212
              R +  ++       H         DE           + 
Sbjct: 1436 LSRRW--KQRKNVQNIH-----LFVVDEVHLIGGENGPVLE 1469


>gi|255723341|ref|XP_002546604.1| hypothetical protein CTRG_06082 [Candida tropicalis MYA-3404]
 gi|240130735|gb|EER30298.1| hypothetical protein CTRG_06082 [Candida tropicalis MYA-3404]
          Length = 1926

 Score = 39.9 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 15/125 (12%), Positives = 36/125 (28%), Gaps = 16/125 (12%)

Query: 80   CAISAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTL--WAEVSKWLSMLP 136
              + +  G GKT + A + +W      P   ++ IA  +  ++  +  W E      +  
Sbjct: 1132 VFVGSPTGSGKT-VVAELAIWHAFNEFPSSKVVYIAPMKALVRERVDDWRE-----RICK 1185

Query: 137  HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
            +     ++         +       +    + +    R +   +              V 
Sbjct: 1186 NTAHRLVELTGDSLPSVHEVKEADIIITTPEKFDGISRNWQTRKFV-------QQVSLVI 1238

Query: 197  NDEAS 201
             DE  
Sbjct: 1239 MDEIH 1243


>gi|226222706|ref|YP_002756813.1| DNA segregation ATPase FtsK/SpoIIIE [Listeria monocytogenes
            Clip81459]
 gi|225875168|emb|CAS03860.1| Putative DNA segregation ATPase FtsK/SpoIIIE [Listeria monocytogenes
            serotype 4b str. CLIP 80459]
          Length = 1498

 Score = 39.9 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 33/328 (10%), Positives = 76/328 (23%), Gaps = 44/328 (13%)

Query: 26   LSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAG 85
            L   NF      W    KPL+            ++  ++     +          A+ + 
Sbjct: 962  LHPVNF---EEAWKEPKKPLQATIG-------LLDQPELQAQVPLTLDLTKDGHVAVFSS 1011

Query: 86   RGIGKTTLNAWMMLWLISTRPGMS------------IICIANSETQLKNTLWAE---VSK 130
             G GK+T    +++ L                    ++ + +        +  E   V K
Sbjct: 1012 PGFGKSTFLQSLVMDLARQHNPEQLHVYLLDFGTNGLLPLIDLPHVADTMMVDEVEKVQK 1071

Query: 131  WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
            +L +  +      + LS +      +    S         +     + +           
Sbjct: 1072 FLRICLNEIKTRKKLLSQYRVANIEQYERASGKELPNIIIVLDNYDAVKDAGLGDDF--E 1129

Query: 191  HGMAVFNDEASGTPDIINKSILGF--------FTELNPNRFWIMTSNTRRLNGWFYDIFN 242
              +     E +     +   I                     +   +   ++        
Sbjct: 1130 KIITQITREGASI--GMFMIISASRHMSLRTQMATNIKQMIALYLIDKNDISSTVGRTDT 1187

Query: 243  IPLEDWKRYQIDTRTVEGIDS------GFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
               E   R  +   TV    +            I     ++ + R    G+ P+      
Sbjct: 1188 PLEEYPGRALVKLETVTTFQTTLPSQGEETIQQIEGIRNEAKLMREGWQGELPESVPMIP 1247

Query: 297  IPHNYIEEAMSRE-AIDDLYAPLIMGCD 323
                  +     E         + +G D
Sbjct: 1248 EKIKLADFCEWMETKEVVANGNIPIGVD 1275


>gi|150864206|ref|XP_001382938.2| DNA-directed DNA polymerase [Scheffersomyces stipitis CBS 6054]
 gi|149385462|gb|ABN64909.2| DNA-directed DNA polymerase [Scheffersomyces stipitis CBS 6054]
          Length = 1942

 Score = 39.9 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 36/124 (29%), Gaps = 14/124 (11%)

Query: 80   CAISAGRGIGKTTLNAWMMLWLIS-TRPGMSIICIANSETQLKNTLWAEVSKWLSM-LPH 137
              + +  G GKT + A + +W      PG  ++ IA  +  ++      V  W +    +
Sbjct: 1145 VFVGSPTGSGKT-VVAELAIWHAFKQFPGSKVVYIAPMKALVRER----VDDWRARICKN 1199

Query: 138  RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
              +  ++                 +    + +    R +   +              V  
Sbjct: 1200 TSYKLVELTGDSLPEAKEVREADIIITTPEKFDGISRNWQTRKFV-------QQVSLVIM 1252

Query: 198  DEAS 201
            DE  
Sbjct: 1253 DEIH 1256


>gi|121708259|ref|XP_001272076.1| DNA replication helicase Dna2, putative [Aspergillus clavatus NRRL 1]
 gi|119400224|gb|EAW10650.1| DNA replication helicase Dna2, putative [Aspergillus clavatus NRRL 1]
          Length = 1679

 Score = 39.9 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 37/120 (30%), Gaps = 7/120 (5%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM--Q 144
            G GKTT  A ++        G S++  + + T + N L    +  + +L      ++  +
Sbjct: 1167 GTGKTTTIAHII--RALVAQGKSVLLTSYTHTAVDNILLKIRNDNIRILRVGATAKVHPE 1224

Query: 145  SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                       +   + +    +   +   T      + F             DEAS   
Sbjct: 1225 VQQFVDLAAIPKTTIEELKASYEESQVVATTCLGVNHNIFNR---RIFDYCIVDEASQIT 1281


>gi|180165079|gb|ACB87135.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 39.9 bits (91), Expect = 0.68,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTAT-- 1721

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1722 ----------RSEHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|146422038|ref|XP_001486961.1| hypothetical protein PGUG_00338 [Meyerozyma guilliermondii ATCC
           6260]
 gi|146388082|gb|EDK36240.1| hypothetical protein PGUG_00338 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1043

 Score = 39.9 bits (91), Expect = 0.68,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 37/125 (29%), Gaps = 10/125 (8%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            A++AGRG GK+      +     +    +I   + S   LK  L+  + K    L +  
Sbjct: 279 VALTAGRGRGKSAALGIAIA-AAVSHDYSNIFVTSPSPENLKT-LFEFIFKGFDALGYTE 336

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +   +      +   ++   +    +                           +  DE
Sbjct: 337 HMDYDIIQSTNPAFNKAIVRVDIKRGHRQTIQYISPNDSHVLGQAE--------LLIIDE 388

Query: 200 ASGTP 204
           A+  P
Sbjct: 389 AAAIP 393


>gi|78042906|ref|YP_359101.1| DEAD-box ATP dependent DNA helicase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995021|gb|ABB13920.1| ATP-dependent RNA helicase, DEAD box family [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 430

 Score = 39.9 bits (91), Expect = 0.68,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 43/185 (23%), Gaps = 26/185 (14%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
            F  P   Q E +  +                     A  G GKT      +L  I    
Sbjct: 21  GFEMPTPIQKEAIPLILEG------------HNLVGQAPTGTGKTAAYLLPVLQRIQRGK 68

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
              ++ +  +          EV+K    L  R        ++           Q  G+  
Sbjct: 69  KAQVLIVTPTRELALQVA-DEVAKLGKYLKVRALAVYGGQAI---------ERQIRGLRQ 118

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN----KSILGFFTELNPNR 222
               I                       V  DEA    D+      ++IL   T      
Sbjct: 119 GVEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTL 178

Query: 223 FWIMT 227
            +  T
Sbjct: 179 LFSAT 183


>gi|71018359|ref|XP_759410.1| hypothetical protein UM03263.1 [Ustilago maydis 521]
 gi|46098957|gb|EAK84190.1| hypothetical protein UM03263.1 [Ustilago maydis 521]
          Length = 1054

 Score = 39.9 bits (91), Expect = 0.68,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 49/166 (29%), Gaps = 13/166 (7%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA-EVSKWLS-MLPHRHWFEMQ 144
           G+GKT      M+ L+ +      + +A +   +    W  E+ ++    L    W    
Sbjct: 468 GMGKT----IQMISLMLSDRKKPCLVVAPT---VAIMQWRNEIEQYTEPKLKVLMWHGAN 520

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG--PHNTHGMAVFNDEASG 202
                     A+++  S  +    +      +  +          H  H   +  DEA  
Sbjct: 521 RTQDLKELKAADVVLTSYAVLESSFRKQESGFRRKNEILKERSALHAVHWRRIILDEAHN 580

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNT-RRLNGWFYDIFNIPLED 247
             +    +  G F        W ++    +   G  Y +      D
Sbjct: 581 IKERSTNTAKGAFALQGD-FRWCLSGTPLQNRVGELYSMIRFLGGD 625


>gi|238022589|ref|ZP_04603015.1| hypothetical protein GCWU000324_02497 [Kingella oralis ATCC 51147]
 gi|237867203|gb|EEP68245.1| hypothetical protein GCWU000324_02497 [Kingella oralis ATCC 51147]
          Length = 759

 Score = 39.9 bits (91), Expect = 0.68,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 43/162 (26%), Gaps = 13/162 (8%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           +++   G GKT  +    L          +I +    + ++    AE  K    L     
Sbjct: 261 SLTVPTGGGKTFTSMAFALEHAKAHGLRRVIYVIPFTSIIEQNA-AEFRKAFGALGEAAV 319

Query: 141 FEMQSLSLHPS-GWYAELLEQSMGIDSKHYTITCRTYS-------EERPDTFVGPHNTHG 192
            E  S              +  +  ++    +   T          +R       HN  G
Sbjct: 320 LEHHSSFDDARLQGENSKDKLRLASENWDMPVVVTTAVQFFESLFADRSSRCRKLHNISG 379

Query: 193 MAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNT 230
             +  DEA   P      I +++         +      +  
Sbjct: 380 SVIILDEAQLLPLNLLRPIMQAVKELARNYGCSVVLCTATQP 421


>gi|209809828|ref|YP_002265367.1| putative exported ATPase protein [Aliivibrio salmonicida LFI1238]
 gi|208011391|emb|CAQ81856.1| putative exported ATPase protein [Aliivibrio salmonicida LFI1238]
          Length = 717

 Score = 39.9 bits (91), Expect = 0.68,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 44/161 (27%), Gaps = 32/161 (19%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             I+A RG GK++     +  L+ +   ++I   A     +                   
Sbjct: 199 LIITADRGRGKSSAIGIAIAELVLSHK-LTIAITAPQRASVDEI---------------- 241

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH-GMAVFND 198
            F   +      G   E  + ++ I+                         H    V  D
Sbjct: 242 -FSHAARVSIQLGMPVEHNKNTLIINGSSILYIAP---------DELVRGEHLVDVVCVD 291

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
           EA+  P      +L   +E      +  T N     G  ++
Sbjct: 292 EAAAIP----APMLLSLSEKYSRMIFSTTINGYEGTGRGFE 328


>gi|162456487|ref|YP_001618854.1| putative helicase [Sorangium cellulosum 'So ce 56']
 gi|161167069|emb|CAN98374.1| putative helicase [Sorangium cellulosum 'So ce 56']
          Length = 848

 Score = 39.9 bits (91), Expect = 0.68,   Method: Composition-based stats.
 Identities = 22/199 (11%), Positives = 54/199 (27%), Gaps = 8/199 (4%)

Query: 34  RFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93
            +  W +          P   Q + +  +         ++   I         G GKT  
Sbjct: 8   FYKKWSLPECRDYPQEPPAAHQAKALGELGKWYAKQGKSAGAGILVL----PTGGGKTFT 63

Query: 94  NAWMMLWLISTRPGMSIICIANSETQLKNTL-WAEVSKWLSMLPHRHWFEMQSLSLHPSG 152
               +     +  G  ++ +A++   L+         +  ++   R    ++ +S     
Sbjct: 64  AVRFLAEGPLS-DGYKVLWLAHTHHLLEQAFHCFRPGRIGAIREPRCELRLRVVSGTEGH 122

Query: 153 WYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT-HGMAVFNDEASGTPDIINKSI 211
           +    +E +  +             +  P+           + V  DEA   P    + +
Sbjct: 123 FPPRYVEPTDDVVIGTLQTIAIAVRDGLPNMKEFLKAAGKKLFVVFDEAHHAPAPSYRKL 182

Query: 212 LGFFTELNPNRFWIMTSNT 230
           L             +T+  
Sbjct: 183 LQGLQAEGAPVL-GLTATP 200


>gi|308172829|ref|YP_003919534.1| phage protein [Bacillus amyloliquefaciens DSM 7]
 gi|307605693|emb|CBI42064.1| phage uncharacterized protein [Bacillus amyloliquefaciens DSM 7]
          Length = 564

 Score = 39.9 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 24/202 (11%), Positives = 60/202 (29%), Gaps = 13/202 (6%)

Query: 5   ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWG----IKGKPLEHFSQ--PHRWQLEF 58
           I   +K + EL ++       +    F   +   G     +   + +     PH    + 
Sbjct: 22  IDMFRKNKAELIKLKRVHRAEVDIAYFTYEYLSDGLNPENEDNVVRNSDDGTPHDGIEDI 81

Query: 59  MEAVDVHCHSNVNNSNPTI-FKCAISAGRGIGKTTLNAWMM-LWLISTRPGMSIICIANS 116
            +  +         +      + AI+A RG  K+ + +  + L   + R    I+ I+ +
Sbjct: 82  AKIHEEFFELCDYVNEEKRNARLAIAAARGHSKSGMFSNALPLHQAAYRKRKYILVISET 141

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
                ++L  ++  W++     +    +          +   + +         I   + 
Sbjct: 142 -----DSLSKKLIGWVNKQMKFNGKLREDFGPMMHESASRNEKDNEEAFITTTNILIESS 196

Query: 177 SEERPDTFVGPHNTHGMAVFND 198
           S  +              V  D
Sbjct: 197 SSGKQLRGKRHGAVRPDLVIID 218


>gi|255083352|ref|XP_002504662.1| predicted protein [Micromonas sp. RCC299]
 gi|226519930|gb|ACO65920.1| predicted protein [Micromonas sp. RCC299]
          Length = 462

 Score = 39.9 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 37/340 (10%), Positives = 79/340 (23%), Gaps = 53/340 (15%)

Query: 32  VMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR----- 86
             +  P G    P+  FS+   +  + + A       +   +        + +G      
Sbjct: 36  AKKAAPDGTNFTPVAEFSE-AGFSKDVLAATANFKKPSPIQAQSWP---IVLSGHDMVGI 91

Query: 87  ---GIGKTTLNAWMMLWLISTRPGM-----SIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              G GKT       L  I  +P         + +A +    + T         +    R
Sbjct: 92  AATGSGKTMAFGLPALMQILAQPKCAPGSPQCLVLAPTRELAQQTA-KVFEDAGTACGVR 150

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                               ++ M        I                       +  D
Sbjct: 151 CVCVYGGAPKWEQ-------KKLMQQGGGCAVIVATPGRLRDFMNDGDVKLDKVTMLVLD 203

Query: 199 EASGTPDIINKS---ILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-----------NIP 244
           EA    D+  +     +   T  +        +    + G   +              + 
Sbjct: 204 EADRMLDLGFEPEIREIAGKTRADRQTVMFSATWPTSIQGLAAEFMCNPVKVRIGAEGLK 263

Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG----------QFPQQEVN 294
                   ++       D+     +    G    V R  +            +  +++  
Sbjct: 264 ASHSVTQVVEVVEPNEKDAHLARVLKKYLGGKKPVPRTLVFALYKKECARLHENLRRQNW 323

Query: 295 NFIPHNYIEEAMSREAIDDLYA----PLIMGCDIAGEGGD 330
                +       RE   + +     PL++  D+A  G D
Sbjct: 324 QAACIHGDMSQRDRELSVEAFKSGSSPLLIATDVAARGLD 363


>gi|54303269|ref|YP_133262.1| hypothetical protein PBPRB1602 [Photobacterium profundum SS9]
 gi|46916699|emb|CAG23462.1| hypothetical protein trbB [Photobacterium profundum SS9]
          Length = 302

 Score = 39.9 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 15/122 (12%), Positives = 31/122 (25%), Gaps = 11/122 (9%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET---QLKNTLWAEVSKWLSM 134
               I  G G GKTTL   ++  +    P   +I + ++     Q +N         +  
Sbjct: 133 RNIVIVGGTGSGKTTLANAVLAKIAECFPNERLIILEDTNEIQCQARN------HVIMRT 186

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
                      L          ++   +           + ++   P   +  H      
Sbjct: 187 CDKAGISMQTLLRATLRYRPDRIIVGEVRG--GEALDLLKAWNTGHPGGILTIHADSARL 244

Query: 195 VF 196
             
Sbjct: 245 GL 246


>gi|302337590|ref|YP_003802796.1| CRISPR-associated helicase Cas3 [Spirochaeta smaragdinae DSM 11293]
 gi|301634775|gb|ADK80202.1| CRISPR-associated helicase Cas3 [Spirochaeta smaragdinae DSM 11293]
          Length = 741

 Score = 39.9 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 20/185 (10%), Positives = 44/185 (23%), Gaps = 12/185 (6%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +   C    N         +++   G GKT  +    +          II +    + +
Sbjct: 229 DILDWCRKAANLPQGIY---SLTVPTGGGKTKSSVSFAIEHCIRHELKRIIYVIPYTSII 285

Query: 121 KN--TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
                ++  +    ++L H    E +  +              +   +        ++  
Sbjct: 286 SQNAGVFRGIFGVDNVLEHHSNLEPEHENARNRLLCENWDAPIVVTTN---IQFFESFYS 342

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDI----INKSILGFFTELNPNRFWIMTSNTRRLN 234
            R  +    HN     +  DEA   P        + I                +      
Sbjct: 343 SRSSSCRKLHNVADSVIIFDEAQMLPSEFLKPCLEIISELVDNYGCTAVLCTATQPTLNK 402

Query: 235 GWFYD 239
             F  
Sbjct: 403 ERFLK 407


>gi|145637060|ref|ZP_01792723.1| DNA helicase II [Haemophilus influenzae PittHH]
 gi|145269714|gb|EDK09654.1| DNA helicase II [Haemophilus influenzae PittHH]
          Length = 726

 Score = 39.9 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 80/302 (26%), Gaps = 29/302 (9%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIA 114
           E ++ ++      V           + AG G GKT +    + WLI+       SI+ + 
Sbjct: 5   ELLDGLNDKQREAVAAPLGNH---LVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            +            S       H+ +          +          +G+      +   
Sbjct: 62  FTNKAAAEMRHRIQSTLAKHAQHQLFGMWIGTFHSIAHRLLRAHHLDIGLPQDFQILDSE 121

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
                     +  HN        DE +  P       +    +               + 
Sbjct: 122 -DQLRLIKRLLKLHN-------FDEKAF-PPKQACWYINNKKDEGLR--------PNDIE 164

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294
            +        ++ +K YQ        +D                +       +F    V+
Sbjct: 165 DFNDRQEREWIKIYKIYQDTCDRAGLVDFAELLIRAYELFEKKPLILQRYQQRFQHILVD 224

Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354
            F   N I+     + +      +++  D      D++ +   RG  IE+I  +      
Sbjct: 225 EFQDTNKIQYK-WIKILAGKTGKVMIVGD-----DDQS-IYGWRGAQIENIQKFLKDFKA 277

Query: 355 ET 356
           ET
Sbjct: 278 ET 279


>gi|145627832|ref|ZP_01783633.1| DNA helicase II [Haemophilus influenzae 22.1-21]
 gi|145639293|ref|ZP_01794899.1| DNA helicase II [Haemophilus influenzae PittII]
 gi|144979607|gb|EDJ89266.1| DNA helicase II [Haemophilus influenzae 22.1-21]
 gi|145271596|gb|EDK11507.1| DNA helicase II [Haemophilus influenzae PittII]
          Length = 726

 Score = 39.9 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 80/302 (26%), Gaps = 29/302 (9%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIA 114
           E ++ ++      V           + AG G GKT +    + WLI+       SI+ + 
Sbjct: 5   ELLDGLNDKQREAVAAPLGNH---LVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            +            S       H+ +          +          +G+      +   
Sbjct: 62  FTNKAAAEMRHRIQSTLAKHAQHQLFGMWIGTFHSIAHRLLRAHHLDIGLPQDFQILDSE 121

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
                     +  HN        DE +  P       +    +               + 
Sbjct: 122 -DQLRLIKRLLKLHN-------FDEKAF-PPKQACWYINNKKDEGLR--------PNDIE 164

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294
            +        ++ +K YQ        +D                +       +F    V+
Sbjct: 165 DFNDRQEREWIKIYKIYQDTCDRAGLVDFAELLIRAYELFEKKPLILQRYQQRFQHILVD 224

Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354
            F   N I+     + +      +++  D      D++ +   RG  IE+I  +      
Sbjct: 225 EFQDTNKIQYK-WIKILAGKTGKVMIVGD-----DDQS-IYGWRGAQIENIQKFLKDFKA 277

Query: 355 ET 356
           ET
Sbjct: 278 ET 279


>gi|110431906|gb|ABG73585.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 39.9 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPTIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|309751169|gb|ADO81153.1| DNA helicase II [Haemophilus influenzae R2866]
          Length = 727

 Score = 39.9 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 80/302 (26%), Gaps = 29/302 (9%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIA 114
           E ++ ++      V           + AG G GKT +    + WLI+       SI+ + 
Sbjct: 6   ELLDGLNDKQREAVAAPLGNH---LVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 62

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            +            S       H+ +          +          +G+      +   
Sbjct: 63  FTNKAAAEMRHRIQSTLAKHAQHQLFGMWIGTFHSIAHRLLRAHHLDIGLPQDFQILDSE 122

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
                     +  HN        DE +  P       +    +               + 
Sbjct: 123 -DQLRLIKRLLKLHN-------FDEKAF-PPKQACWYINNKKDEGLR--------PNDIE 165

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294
            +        ++ +K YQ        +D                +       +F    V+
Sbjct: 166 DFNDRQEREWIKIYKIYQDTCDRAGLVDFAELLIRAYELFEKKPLILQRYQQRFQHILVD 225

Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354
            F   N I+     + +      +++  D      D++ +   RG  IE+I  +      
Sbjct: 226 EFQDTNKIQYK-WIKILAGKTGKVMIVGD-----DDQS-IYGWRGAQIENIQKFLKDFKA 278

Query: 355 ET 356
           ET
Sbjct: 279 ET 280


>gi|328554891|gb|AEB25383.1| hypothetical protein BAMTA208_16155 [Bacillus amyloliquefaciens
           TA208]
          Length = 584

 Score = 39.9 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 24/202 (11%), Positives = 60/202 (29%), Gaps = 13/202 (6%)

Query: 5   ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWG----IKGKPLEHFSQ--PHRWQLEF 58
           I   +K + EL ++       +    F   +   G     +   + +     PH    + 
Sbjct: 42  IDMFRKNKAELIKLKRVHRAEVDIAYFTYEYLSDGLNPENEDNVVRNSDDGTPHDGIEDI 101

Query: 59  MEAVDVHCHSNVNNSNPTI-FKCAISAGRGIGKTTLNAWMM-LWLISTRPGMSIICIANS 116
            +  +         +      + AI+A RG  K+ + +  + L   + R    I+ I+ +
Sbjct: 102 AKIHEEFFELCDYVNEEKRNARLAIAAARGHSKSGMFSNALPLHQAAYRKRKYILVISET 161

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
                ++L  ++  W++     +    +          +   + +         I   + 
Sbjct: 162 -----DSLSKKLIGWVNKQMKFNAKLREDFGPMMHESASRNEKDNEEAFITTTNILIESS 216

Query: 177 SEERPDTFVGPHNTHGMAVFND 198
           S  +              V  D
Sbjct: 217 SSGKQLRGKRHGAVRPDLVIID 238


>gi|283781038|ref|YP_003371793.1| ABC transporter [Pirellula staleyi DSM 6068]
 gi|283439491|gb|ADB17933.1| ABC transporter related protein [Pirellula staleyi DSM 6068]
          Length = 645

 Score = 39.9 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 24/202 (11%), Positives = 53/202 (26%), Gaps = 15/202 (7%)

Query: 60  EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL-------ISTRPGMSIIC 112
                     ++ + P   K AI    G GK+TL + +  +        +     ++ + 
Sbjct: 431 YDPADPILKGIDLTIPFGEKLAIVGPNGGGKSTLISLLCRFYDPQQGKVLLDGTPLTEMA 490

Query: 113 IANSETQL-----KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
           + +   +L     +  L+ +   +          + + +         E +    G    
Sbjct: 491 LEDLRGRLALVSQQTELFNDSVMYNIRYGRLDATDAEVVEAARKAHAHEFISAMSGGYQT 550

Query: 168 HYTITCRTYSEERPDTFVGPHN--THGMAVFNDEA-SGTPDIINKSILGFFTELNPNRFW 224
                 +  S  +                +  DEA S         I     E   +R  
Sbjct: 551 VVGQNGQRLSGGQRQRIALARAILRDPEILILDEATSQIDVASESLIHDTLAEFGRSRTV 610

Query: 225 IMTSNTRRLNGWFYDIFNIPLE 246
           IM ++          I  +   
Sbjct: 611 IMITHRESTLDLADRIIEVSRG 632


>gi|219666700|ref|YP_002457135.1| superfamily I DNA/RNA helicase [Desulfitobacterium hafniense DCB-2]
 gi|219536960|gb|ACL18699.1| superfamily I DNA/RNA helicase [Desulfitobacterium hafniense DCB-2]
          Length = 1584

 Score = 39.9 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 39/127 (30%), Gaps = 9/127 (7%)

Query: 87   GIGKTTLNAWMMLWLISTRPGM-SIICIANSETQLKNTLWAEVSKWLSMLPHRHW---FE 142
            G GKTT  A  ++  I  +     ++ +  +       +   +        +  W   F 
Sbjct: 1128 GTGKTTYLAREIILPIMQKANALKVLVLTPTNKSADVLVRRLMEVMGVDHSYNDWLVRFG 1187

Query: 143  MQSLSLHPSGWYAELLEQSMGIDSKHYTITC---RTYSEERPDTFVGPHNT--HGMAVFN 197
              + ++             +   S++ T+T      Y    PD     H        +  
Sbjct: 1188 ATNDTIIEQSGIFRDKTFDIRTFSRNVTVTTIARFPYDYFLPDENTRLHLNALKWDYIII 1247

Query: 198  DEASGTP 204
            DEAS  P
Sbjct: 1248 DEASMIP 1254


>gi|189235557|ref|XP_968432.2| PREDICTED: similar to predicted protein [Tribolium castaneum]
          Length = 723

 Score = 39.9 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 27/212 (12%), Positives = 61/212 (28%), Gaps = 24/212 (11%)

Query: 24  CVLSFKNFVMRFFPWGIK-GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82
            +    +F     P  IK G  +  F +P   Q + +                  F   +
Sbjct: 19  ILDENISFASLLLPDDIKQGLSVSGFKKPSPIQFKAI------------PLGRCGFDLIV 66

Query: 83  SAGRGIGKTTLNAWMMLWLI-STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
            +  G GKT + + + L  + + +  + ++ +  +          E++  +  +      
Sbjct: 67  KSKSGTGKTLVFSTIALETVNTAKDHLQVLILVPT---------REIAVQIEDVLRSVGC 117

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
            +  L +        L E  +   SK +         +                  DEA 
Sbjct: 118 HVNGLKIESFIGGRPL-EDDLKKSSKCHIAVGAPGRVKHLLKMGALTTNLVKLFVLDEAD 176

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233
              +   +S +       P R  ++ S+    
Sbjct: 177 KLMEESFQSDINEIYNSLPPRKQMIVSSATYP 208


>gi|270004341|gb|EFA00789.1| hypothetical protein TcasGA2_TC003675 [Tribolium castaneum]
          Length = 688

 Score = 39.9 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 27/212 (12%), Positives = 61/212 (28%), Gaps = 24/212 (11%)

Query: 24  CVLSFKNFVMRFFPWGIK-GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82
            +    +F     P  IK G  +  F +P   Q + +                  F   +
Sbjct: 19  ILDENISFASLLLPDDIKQGLSVSGFKKPSPIQFKAI------------PLGRCGFDLIV 66

Query: 83  SAGRGIGKTTLNAWMMLWLI-STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
            +  G GKT + + + L  + + +  + ++ +  +          E++  +  +      
Sbjct: 67  KSKSGTGKTLVFSTIALETVNTAKDHLQVLILVPT---------REIAVQIEDVLRSVGC 117

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
            +  L +        L E  +   SK +         +                  DEA 
Sbjct: 118 HVNGLKIESFIGGRPL-EDDLKKSSKCHIAVGAPGRVKHLLKMGALTTNLVKLFVLDEAD 176

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233
              +   +S +       P R  ++ S+    
Sbjct: 177 KLMEESFQSDINEIYNSLPPRKQMIVSSATYP 208


>gi|126173085|ref|YP_001049234.1| ATP-dependent RNA helicase SrmB [Shewanella baltica OS155]
 gi|125996290|gb|ABN60365.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 419

 Score = 39.9 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 48/233 (20%), Gaps = 22/233 (9%)

Query: 57  EFMEAVDVH----CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM---- 108
           E + A+  H                      A  G GKT       L  +   P      
Sbjct: 14  ESLNAMGHHSPTTIQQETIPYALEQRDILARAPTGTGKTASFLLPSLQHLIDFPRRFAGQ 73

Query: 109 -SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
             I+ +  +          E++  +      H    Q L +           Q   +  K
Sbjct: 74  ARILILTPT---------RELASQIHRYAC-HLATGQGLDIAIVTGGVPYGPQEEALAGK 123

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
              +                +      +  DEA    D+   S++         R   M 
Sbjct: 124 VDILVATPGRLMEYLDKGNFNAQEVDILIIDEADRMLDMGFSSVVQAIAIEAQGRKQNML 183

Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280
            +     G         L D     +        +       I          
Sbjct: 184 FSATLEGGGVQRFAREVLNDPIEIDV---EAPRSEKAKIHQWIHLADDKEHKF 233


>gi|323940184|gb|EGB36378.1| DEAD/DEAH box helicase [Escherichia coli E482]
          Length = 726

 Score = 39.9 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 62/208 (29%), Gaps = 36/208 (17%)

Query: 24  CVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS 83
              SF  F+ R F        + +         E    +         + +  + + AIS
Sbjct: 119 IPESFYAFLKRSFIENENKIKISN--------KEI--TLTNFQKRVWESLHSNVPQ-AIS 167

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           A    GK+ L   M+   I +    S I IA +   +       +   +  LP+++   +
Sbjct: 168 APTSAGKSFLVVEMLANGIISGELNSAIYIAPTRALVNEITQKFI---IKTLPYQNEVRV 224

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
            S+    + +            +K   +  +   +   D F          V  DEA   
Sbjct: 225 TSIPTINNEY------------NKQIFVLTQERLQVLLDNFE----EKIDLVVIDEAQSI 268

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTR 231
            D     I G   +       I T N  
Sbjct: 269 SDE----IRGMILQ--DCLDKISTQNPN 290


>gi|283853557|ref|ZP_06370796.1| PhoH family protein [Desulfovibrio sp. FW1012B]
 gi|283571056|gb|EFC19077.1| PhoH family protein [Desulfovibrio sp. FW1012B]
          Length = 328

 Score = 39.9 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 54/203 (26%), Gaps = 23/203 (11%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKT L   M +  +  R    +I    +             +    L       ++ +
Sbjct: 142 GTGKTYLAVAMGVGFLLERRVKRLILTRPA------------VEAGEKLGFLPGDMVEKV 189

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
           + +    Y  L +       +    T     E  P  F+     +   +  DEA  T   
Sbjct: 190 NPYLRPLYDALNDMLDFRKVREMLDTGVI--EVAPLAFMRGRTLNDALIILDEAQNTTPE 247

Query: 207 INKSILGFFTELNPNRFWIMTSN------TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
             K      T L      ++T +        R      +   +         +     + 
Sbjct: 248 QMKMF---LTRLGLASKAVVTGDVTQIDLPPRSVSGLVEAKRVLDGVHGIDFVSFTDADV 304

Query: 261 IDSGFHEGIISRYGLDSDVARIE 283
           I       I+  Y  DS   + E
Sbjct: 305 IRHPLVGRIVQAYERDSRQGKTE 327


>gi|260910277|ref|ZP_05916953.1| type I restriction-modification system [Prevotella sp. oral taxon
           472 str. F0295]
 gi|260635601|gb|EEX53615.1| type I restriction-modification system [Prevotella sp. oral taxon
           472 str. F0295]
          Length = 763

 Score = 39.9 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 93/307 (30%), Gaps = 43/307 (14%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
           +  +P  +Q   +E          +       +  I    G GKT     ++  L +T  
Sbjct: 158 YTYEPRYYQRIAVERTIEAIAKGKD-------RVLIVMATGTGKTITAFQIIHRLKATGK 210

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
              ++ +A+    +  T+  +   +  ++       + S        Y +L+   +G++ 
Sbjct: 211 KKKVLYLADRNILIDQTMAQDFKPFKKVMTKVQGASIDSAYEVYMALYHQLVSNEVGME- 269

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
                          D F     T    +  DE        + +        N      M
Sbjct: 270 ---------------DPFKQVQPTFFDLIIVDECHRGSAKDDSAWRKVLEYFNTATQIGM 314

Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
           T+  +   G                 +D            +GI      D  +A   +  
Sbjct: 315 TATPKAETG--------------ANNLDYFGEPVFTYSLLQGI-----QDGFLAPYRVTN 355

Query: 287 QFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
            +   ++  F P +  ++ + R+    LY    +G DIA     + +V  R   +++ I 
Sbjct: 356 SYISIDLQGFKPDDDEKDLLGRDIAQRLYERKDIGRDIAFTKR-REIVAKRITKMLKQIG 414

Query: 347 DWSAKLI 353
             +  ++
Sbjct: 415 RMTKTIV 421


>gi|187957728|gb|AAI50786.1| Fanconi anemia, complementation group M [Mus musculus]
          Length = 2021

 Score = 39.9 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 32/250 (12%), Positives = 72/250 (28%), Gaps = 19/250 (7%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
               +    G+GKT + A +M       P   ++ +A ++  +   + A        +P 
Sbjct: 93  CNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQQMEACFHVM--GIPQ 150

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
            H  EM   +   +    E+      +      +         P T       H   +  
Sbjct: 151 SHMAEMTGSTQ--AVNRKEIWSSRRVLFLTPQVMVNDLTRGAVPAT-------HVKCLVV 201

Query: 198 DEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256
           DEA     +     ++    +   +   +  S T   +        I      + ++ + 
Sbjct: 202 DEAHKALGNYAYCQVVRELVKYTTHFRILALSATP-GSDIKAVQQVITNLLIGKIELRSE 260

Query: 257 TVEGI---DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
               I           +     +   A  +   Q  +   ++ I  N +   M R+  + 
Sbjct: 261 ESPDILPYSHERRVEKLVVPLGEELGAIQKTYIQILETFASSLIHRNVL---MKRDIPNL 317

Query: 314 LYAPLIMGCD 323
               +I+  D
Sbjct: 318 TKYQIILARD 327


>gi|148704700|gb|EDL36647.1| mCG118968 [Mus musculus]
          Length = 1370

 Score = 39.9 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 32/250 (12%), Positives = 72/250 (28%), Gaps = 19/250 (7%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
               +    G+GKT + A +M       P   ++ +A ++  +   + A        +P 
Sbjct: 61  CNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQQMEACFHVM--GIPQ 118

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
            H  EM   +   +    E+      +      +         P T       H   +  
Sbjct: 119 SHMAEMTGSTQ--AVNRKEIWSSRRVLFLTPQVMVNDLTRGAVPAT-------HVKCLVV 169

Query: 198 DEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256
           DEA     +     ++    +   +   +  S T   +        I      + ++ + 
Sbjct: 170 DEAHKALGNYAYCQVVRELVKYTTHFRILALSATP-GSDIKAVQQVITNLLIGKIELRSE 228

Query: 257 TVEGI---DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
               I           +     +   A  +   Q  +   ++ I  N +   M R+  + 
Sbjct: 229 ESPDILPYSHERRVEKLVVPLGEELGAIQKTYIQILETFASSLIHRNVL---MKRDIPNL 285

Query: 314 LYAPLIMGCD 323
               +I+  D
Sbjct: 286 TKYQIILARD 295


>gi|26343661|dbj|BAC35487.1| unnamed protein product [Mus musculus]
          Length = 651

 Score = 39.9 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 32/250 (12%), Positives = 72/250 (28%), Gaps = 19/250 (7%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
               +    G+GKT + A +M       P   ++ +A ++  +   + A        +P 
Sbjct: 93  CNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQQMEACFHVM--GIPQ 150

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
            H  EM   +   +    E+      +      +         P T       H   +  
Sbjct: 151 SHMAEMTGSTQ--AVNRKEIWSSRRVLFLTPQVMVNDLTRGAVPAT-------HVKCLVV 201

Query: 198 DEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256
           DEA     +     ++    +   +   +  S T   +        I      + ++ + 
Sbjct: 202 DEAHKALGNYAYCQVVRELVKYTTHFRILALSATP-GSDIKAVQQVITNLLIGKIELRSE 260

Query: 257 TVEGI---DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
               I           +     +   A  +   Q  +   ++ I  N +   M R+  + 
Sbjct: 261 ESPDILPYSHERRVEKLVVPLGEELGAIQKTYIQILETFASSLIHRNVL---MKRDIPNL 317

Query: 314 LYAPLIMGCD 323
               +I+  D
Sbjct: 318 TKYQIILARD 327


>gi|26352047|dbj|BAC39660.1| unnamed protein product [Mus musculus]
          Length = 433

 Score = 39.9 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 32/250 (12%), Positives = 72/250 (28%), Gaps = 19/250 (7%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
               +    G+GKT + A +M       P   ++ +A ++  +   + A        +P 
Sbjct: 93  CNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQQMEACFHVM--GIPQ 150

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
            H  EM   +   +    E+      +      +         P T       H   +  
Sbjct: 151 SHMAEMTGSTQ--AVNRKEIWSSRRVLFLTPQVMVNDLTRGAVPAT-------HVKCLVV 201

Query: 198 DEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256
           DEA     +     ++    +   +   +  S T   +        I      + ++ + 
Sbjct: 202 DEAHKALGNYAYCQVVRELVKYTTHFRILALSATP-GSDIKAVQQVITNLLIGKIELRSE 260

Query: 257 TVEGI---DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
               I           +     +   A  +   Q  +   ++ I  N +   M R+  + 
Sbjct: 261 ESPDILPYSHERRVEKLVVPLGEELGAIQKTYIQILETFASSLIHRNVL---MKRDIPNL 317

Query: 314 LYAPLIMGCD 323
               +I+  D
Sbjct: 318 TKYQIILARD 327


>gi|26333531|dbj|BAC30483.1| unnamed protein product [Mus musculus]
          Length = 519

 Score = 39.9 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 32/250 (12%), Positives = 72/250 (28%), Gaps = 19/250 (7%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
               +    G+GKT + A +M       P   ++ +A ++  +   + A        +P 
Sbjct: 93  CNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQQMEACFHVM--GIPQ 150

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
            H  EM   +   +    E+      +      +         P T       H   +  
Sbjct: 151 SHMAEMTGSTQ--AVNRKEIWSSRRVLFLTPQVMVNDLTRGAVPAT-------HVKCLVV 201

Query: 198 DEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256
           DEA     +     ++    +   +   +  S T   +        I      + ++ + 
Sbjct: 202 DEAHKALGNYAYCQVVRELVKYTTHFRILALSATP-GSDIKAVQQVITNLLIGKIELRSE 260

Query: 257 TVEGI---DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
               I           +     +   A  +   Q  +   ++ I  N +   M R+  + 
Sbjct: 261 ESPDILPYSHERRVEKLVVPLGEELGAIQKTYIQILETFASSLIHRNVL---MKRDIPNL 317

Query: 314 LYAPLIMGCD 323
               +I+  D
Sbjct: 318 TKYQIILARD 327


>gi|74197309|dbj|BAC34178.2| unnamed protein product [Mus musculus]
 gi|74217148|dbj|BAC39257.2| unnamed protein product [Mus musculus]
          Length = 1393

 Score = 39.9 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 32/250 (12%), Positives = 72/250 (28%), Gaps = 19/250 (7%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
               +    G+GKT + A +M       P   ++ +A ++  +   + A        +P 
Sbjct: 93  CNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQQMEACFHVM--GIPQ 150

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
            H  EM   +   +    E+      +      +         P T       H   +  
Sbjct: 151 SHMAEMTGSTQ--AVNRKEIWSSRRVLFLTPQVMVNDLTRGAVPAT-------HVKCLVV 201

Query: 198 DEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256
           DEA     +     ++    +   +   +  S T   +        I      + ++ + 
Sbjct: 202 DEAHKALGNYAYCQVVRELVKYTTHFRILALSATP-GSDIKAVQQVITNLLIGKIELRSE 260

Query: 257 TVEGI---DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
               I           +     +   A  +   Q  +   ++ I  N +   M R+  + 
Sbjct: 261 ESPDILPYSHERRVEKLVVPLGEELGAIQKTYIQILETFASSLIHRNVL---MKRDIPNL 317

Query: 314 LYAPLIMGCD 323
               +I+  D
Sbjct: 318 TKYQIILARD 327


>gi|54112418|ref|NP_849243.2| Fanconi anemia group M protein homolog [Mus musculus]
 gi|78099255|sp|Q8BGE5|FANCM_MOUSE RecName: Full=Fanconi anemia group M protein homolog; Short=Protein
           FACM; AltName: Full=ATP-dependent RNA helicase FANCM
          Length = 2021

 Score = 39.9 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 32/250 (12%), Positives = 72/250 (28%), Gaps = 19/250 (7%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
               +    G+GKT + A +M       P   ++ +A ++  +   + A        +P 
Sbjct: 93  CNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQQMEACFHVM--GIPQ 150

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
            H  EM   +   +    E+      +      +         P T       H   +  
Sbjct: 151 SHMAEMTGSTQ--AVNRKEIWSSRRVLFLTPQVMVNDLTRGAVPAT-------HVKCLVV 201

Query: 198 DEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256
           DEA     +     ++    +   +   +  S T   +        I      + ++ + 
Sbjct: 202 DEAHKALGNYAYCQVVRELVKYTTHFRILALSATP-GSDIKAVQQVITNLLIGKIELRSE 260

Query: 257 TVEGI---DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
               I           +     +   A  +   Q  +   ++ I  N +   M R+  + 
Sbjct: 261 ESPDILPYSHERRVEKLVVPLGEELGAIQKTYIQILETFASSLIHRNVL---MKRDIPNL 317

Query: 314 LYAPLIMGCD 323
               +I+  D
Sbjct: 318 TKYQIILARD 327


>gi|329954246|ref|ZP_08295340.1| phage terminase, large subunit, PBSX family [Bacteroides clarus YIT
           12056]
 gi|328527952|gb|EGF54938.1| phage terminase, large subunit, PBSX family [Bacteroides clarus YIT
           12056]
          Length = 438

 Score = 39.9 bits (91), Expect = 0.71,   Method: Composition-based stats.
 Identities = 30/269 (11%), Positives = 77/269 (28%), Gaps = 39/269 (14%)

Query: 90  KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLH 149
           K+ L    ++      P        N+    + ++     K  +   + ++         
Sbjct: 34  KSWLGCEWLMQCCHYLPETRWFAGRNNLKDSRASIAVTFVKVANSHGYPYYHLTNDG--- 90

Query: 150 PSGWYAELLEQSMGIDSKHYTITC-RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208
                       +  D+    I    TY   +   +    +      + +EA     +  
Sbjct: 91  ------------IKFDNGSEIIFLDLTYYPYKDPMYERFGSLEFTGGWIEEAGQVNRLAF 138

Query: 209 KSILGFFTEL-----NPNRFWIMTSNTRRLNGWFYDIFNIP------LEDWKRYQIDTRT 257
           + +            N     ++T N ++   W YD F  P       + +   Q   + 
Sbjct: 139 EVLQTRIGRHLNDVYNVPGKILITCNPKK--NWLYDKFYKPWKEHKLKDGYAFVQALVQD 196

Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY-A 316
                  +   + +    +  V +  +     + + +   P    +     +   + +  
Sbjct: 197 NPFATEDYINTLKNT---NDKVTKERLYFGNWEYDND---PAVLCDYDAICDLFVNEHVQ 250

Query: 317 PLIMGC---DIAGEGGDKTVVVFRRGNII 342
           P+ +     D+A +G D+ V     GN+ 
Sbjct: 251 PVGLSTGSSDLAMKGRDRFVSGHWIGNVC 279


>gi|319411618|emb|CBQ73662.1| probable RAD16-nucleotide excision repair protein [Sporisorium
           reilianum]
          Length = 1070

 Score = 39.9 bits (91), Expect = 0.71,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 48/166 (28%), Gaps = 13/166 (7%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA-EVSKWLS-MLPHRHWFEMQ 144
           G+GKT      M+ L+ +      + +A +   +    W  E+ K+    L    W    
Sbjct: 484 GMGKT----IQMISLMLSDRKKPCLVVAPT---VAIMQWRNEIEKYTEPQLKVLLWHGPN 536

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD--TFVGPHNTHGMAVFNDEASG 202
                      +++  S  +    +      +  +          H  H   +  DEA  
Sbjct: 537 RTQNLKELKAVDVVLTSYAVLESSFRKQESGFRRKNEILKEKSALHAVHWRRIILDEAHN 596

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNT-RRLNGWFYDIFNIPLED 247
             +    +  G F        W ++    +   G  Y +      D
Sbjct: 597 IKERSTNTAKGAFALQGD-FRWCLSGTPLQNRVGELYSMIRFLGGD 641


>gi|306821434|ref|ZP_07455038.1| conserved hypothetical protein [Eubacterium yurii subsp. margaretiae
            ATCC 43715]
 gi|304550509|gb|EFM38496.1| conserved hypothetical protein [Eubacterium yurii subsp. margaretiae
            ATCC 43715]
          Length = 1587

 Score = 39.9 bits (91), Expect = 0.71,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 64/193 (33%), Gaps = 11/193 (5%)

Query: 28   FKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRG 87
            FK+F++++F    +   LE    P ++  E  E +       +N+ N       + AG G
Sbjct: 1000 FKDFLIKYFD-KAEQVDLERNISPEKY-KELFEELSPKQKEIINDDNSQF--ITVLAGAG 1055

Query: 88   IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
             GKT +    +  L+      +   +  + ++   T +    + + ++    +F +   +
Sbjct: 1056 SGKTKVLVHKLASLLLMEDVKAEQLLMLTFSRAAATEFK--KRLIELIGDGAYF-VDIKT 1112

Query: 148  LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207
             H   +       ++       +        ++ +            +  DEA    +  
Sbjct: 1113 FHSYCFDILGQRGTVEKSENIVSKAVDEILSKKVEQGQV----TKSVIVIDEAQDMDEDS 1168

Query: 208  NKSILGFFTELNP 220
             K +       + 
Sbjct: 1169 FKLLEAIIAANDG 1181


>gi|154335334|ref|XP_001563907.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 1080

 Score = 39.9 bits (91), Expect = 0.71,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 44/125 (35%), Gaps = 10/125 (8%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
           C ++AGRG GK+     MM+     +   +I+C A +   +  TL+    + L  L +R 
Sbjct: 305 CVVTAGRGRGKSAAL-GMMVAGAIAQGYSNIMCTAPTPENV-QTLFEFAIRGLKELGYRE 362

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             + ++L      +    +  ++  + +                              DE
Sbjct: 363 RTDFEALQGVSEEFAKCFIRINVFREHRQTLQFVSAT--------DTAKFAQAEVCVIDE 414

Query: 200 ASGTP 204
           A+  P
Sbjct: 415 AAALP 419


>gi|115756213|ref|XP_001201651.1| PREDICTED: similar to helicase, partial [Strongylocentrotus
           purpuratus]
 gi|115937753|ref|XP_796771.2| PREDICTED: similar to helicase, partial [Strongylocentrotus
           purpuratus]
          Length = 633

 Score = 39.9 bits (91), Expect = 0.71,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 46/150 (30%), Gaps = 6/150 (4%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
            M  ++    + +     +     I    G GKTT    ++  L++   GMS++  + + 
Sbjct: 324 IMRDLNEDQRAAIKAVLRSQDYTVIIGMPGTGKTTTIVALVRILVAC--GMSVLLTSYTH 381

Query: 118 TQLKNTLWAEVSKWLS--MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
           + + N L   +   +    L  +H    +      S    E    S             T
Sbjct: 382 SAVDNILLKLLKYKIDILRLGAQHNIHPELREFSDSKLMKEASGVSQLAMQMERKKVVAT 441

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
            S       +  H+        DEAS    
Sbjct: 442 TSLGMKHALLTRHS--FDVCIVDEASQISQ 469


>gi|209527482|ref|ZP_03275986.1| arsenite-activated ATPase ArsA [Arthrospira maxima CS-328]
 gi|209492090|gb|EDZ92441.1| arsenite-activated ATPase ArsA [Arthrospira maxima CS-328]
          Length = 637

 Score = 39.5 bits (90), Expect = 0.72,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 8/127 (6%)

Query: 80  CAISAGRG-IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
            A+ +G+G +GKTTL   + L   S  P   I+ ++        +L   +   +   PH 
Sbjct: 10  LALFSGKGGVGKTTLACGLALHWASQFPDDRILLLSTDPAH---SLGDVLQMQVENTPHH 66

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                  + L      A      +    + Y  T +       +            V++ 
Sbjct: 67  VAAMADFVPLPNLSIRALDAHILLKDFKERYGDTLQLL----VERGSFVEGEDLTPVWDL 122

Query: 199 EASGTPD 205
           E  G  +
Sbjct: 123 EWPGVDE 129


>gi|84386171|ref|ZP_00989200.1| Predicted P-loop ATPase fused to an acetyltransferase [Vibrio
           splendidus 12B01]
 gi|84378941|gb|EAP95795.1| Predicted P-loop ATPase fused to an acetyltransferase [Vibrio
           splendidus 12B01]
          Length = 699

 Score = 39.5 bits (90), Expect = 0.72,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 52/217 (23%), Gaps = 37/217 (17%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             ++A RG GK++        L+  R G+ II  A S   ++      + +         
Sbjct: 190 LILTADRGRGKSSTLGIAAAQLLVERHGLDIIVTAPSVKAIEPVFSHAIQRL-------- 241

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                            +    +                      +         +  DE
Sbjct: 242 ------------EVIEVVNATHIRHQGGSLRFVAP--------DDLLKSKPDCDLLMVDE 281

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
           A+  P       +     +      ++ S T          F I  E W          +
Sbjct: 282 AAAIP-------IPMLKSMAGIYHRMVFSTTVHGYEGSGRGFGIKFESWLSVHRPGW--K 332

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
           G          +   L++ +    +LG       +  
Sbjct: 333 GFKLEQPIRWNNNDPLEAWLFDCFLLGNDASLSDSAI 369


>gi|260654109|ref|ZP_05859599.1| CRISPR-associated helicase Cas3 domain protein [Jonquetella
           anthropi E3_33 E1]
 gi|260631094|gb|EEX49288.1| CRISPR-associated helicase Cas3 domain protein [Jonquetella
           anthropi E3_33 E1]
          Length = 810

 Score = 39.5 bits (90), Expect = 0.72,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 48/224 (21%), Gaps = 12/224 (5%)

Query: 68  SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS---ETQLKNTL 124
               +  P  F+  +    G GKT  +    L    T     II          Q  + L
Sbjct: 304 RQAGHCEPGFFQLTV--PTGGGKTLASLAFALEHCLTNGRRRIIYAIPYVSIIEQTADVL 361

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
                   ++L H      +  +L             +   +        +   +R    
Sbjct: 362 RGIFGDTGAVLEHHSNILPERETLQNKLAAENWDAPIVVTTN---VQLFESLLSDRRVLC 418

Query: 185 VGPHNTHGMAVFNDEASGTPDIIN----KSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
              HN     +  DEA   P          + G              +       +    
Sbjct: 419 RKIHNISRSVIILDEAQMLPLQHMRGVLSVLKGLVKHFGVTVLLCTATQPALTRTFSDGQ 478

Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
                   +  QI     +          +  Y         E+
Sbjct: 479 NVSFPGLPEPRQIVPAGADLYQKLLRAEWVRDYNPTQPRTWDEL 522


>gi|255010503|ref|ZP_05282629.1| hypothetical protein Bfra3_15299 [Bacteroides fragilis 3_1_12]
 gi|313148310|ref|ZP_07810503.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137077|gb|EFR54437.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 376

 Score = 39.5 bits (90), Expect = 0.72,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 38/145 (26%), Gaps = 8/145 (5%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
             A+ + R +GKT L           +   +      +   L++ ++A   + L  L   
Sbjct: 38  NLALISTRRMGKTGLIQHCFRERKIRKDYYTFFIDIYATKSLRDLVFALSKEILEELKPS 97

Query: 139 -----HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
                  F     SLH S  +      S+ +          T  E         H     
Sbjct: 98  GKKALQLFWKSVKSLHTSVSFDINGTPSLSLGLGDIQAPATTLDEIFHY---LNHADKPC 154

Query: 194 AVFNDEASGTPDIINKSILGFFTEL 218
            V  DE          ++       
Sbjct: 155 LVAIDEFQQIAGYAEDNVEATLRTY 179


>gi|167767000|ref|ZP_02439053.1| hypothetical protein CLOSS21_01517 [Clostridium sp. SS2/1]
 gi|167710975|gb|EDS21554.1| hypothetical protein CLOSS21_01517 [Clostridium sp. SS2/1]
 gi|291559659|emb|CBL38459.1| Phage terminase-like protein, large subunit [butyrate-producing
           bacterium SSC/2]
          Length = 582

 Score = 39.5 bits (90), Expect = 0.72,   Method: Composition-based stats.
 Identities = 38/282 (13%), Positives = 77/282 (27%), Gaps = 35/282 (12%)

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSI-ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
           RG  K+   + +  + ++     +  I  A +  Q    +    +           F  +
Sbjct: 127 RGAAKSMYESCIQNFFLNVDTSTTYQITTAPTMKQADEVMSPIRTSITRARGPLFKFLTE 186

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE--ASG 202
               + +G  A  ++ +         +T     E RP +              DE  +  
Sbjct: 187 GSLQNTTGSKANRVKLTSTKKGIENFLTGSLL-EVRPMSIDKLQGMRCKIATVDEWLSGD 245

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY------------DIFNIPLEDWKR 250
             +    +I    ++ +       +S     NG               + FN  +  W  
Sbjct: 246 VREDPIGAIEQGASKNDDYLIIATSSEGTVRNGVGDTIKMELMNILKGEYFNPHVSIWYY 305

Query: 251 YQIDTRTVEGIDS-------------GFHEGIISRYGLDSDVARIEILGQF---PQQEVN 294
                  V   D                   +      ++  +R +IL +    P +   
Sbjct: 306 KLDSIEEVNDPDMWLKANPNLGKTVTYETYQLDVDKAENNPASRNDILAKRFGIPMEGYT 365

Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
            F  +   E    R   D    P  +G D++ +G D     F
Sbjct: 366 YFFTYE--ETLTHRRKRDYWQMPCALGADLS-QGDDFCAFTF 404


>gi|154321994|ref|XP_001560312.1| hypothetical protein BC1G_01144 [Botryotinia fuckeliana B05.10]
 gi|150850391|gb|EDN25584.1| hypothetical protein BC1G_01144 [Botryotinia fuckeliana B05.10]
          Length = 730

 Score = 39.5 bits (90), Expect = 0.72,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 51/185 (27%), Gaps = 20/185 (10%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICI----ANSETQLKNTLWAE------VSKWLSMLP 136
           G+GKT + A + ++ +   PGMS +           +  N+ W E           S L 
Sbjct: 201 GLGKT-IEAIVTMYHMKDEPGMSYVVCPAALCPQWVKAINSSWKEGHGLTAFHLHDSSLT 259

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH---YTITCRTYSEERPDTFVGPHNTH-- 191
                 M    L  S  + E  ++     +     Y    +    +RP T +     H  
Sbjct: 260 AHDVQGMGCHVLVMSYNFVETNKRKPKNFAGDIALYANDGKATRPKRPTTSIQSDMWHEI 319

Query: 192 ---GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT-RRLNGWFYDIFNIPLED 247
                 +  DEA                        +  +    R    F  +  +    
Sbjct: 320 NLQPKLLVLDEAQMVNKPALAWARALMALKAKRVLVMSGTLPHNRWTDIFGYLNFLKGHP 379

Query: 248 WKRYQ 252
           +   +
Sbjct: 380 FNTQR 384


>gi|298529811|ref|ZP_07017214.1| CRISPR-associated helicase Cas3 [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511247|gb|EFI35150.1| CRISPR-associated helicase Cas3 [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 721

 Score = 39.5 bits (90), Expect = 0.73,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 53/228 (23%), Gaps = 21/228 (9%)

Query: 60  EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
             +   C  N +   P +F   +    G GKT  +    L          II +    + 
Sbjct: 215 REILERCRENASL-EPGLFTLTV--PTGGGKTLASMAFALEHSQKYGHRRIIYVIPYTSI 271

Query: 120 LKN--TLWAEV---SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS---KHYTI 171
           ++    ++ E+      +    +     +   +          L                
Sbjct: 272 IEQNAQVFREIFPPDSIIEHHSNFDERSLPEEADQFGPGLRHRLACENWGAPVVVTTNVQ 331

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMT 227
              +    +P      HN  G  +  DEA   P    +   +++         +      
Sbjct: 332 FFESLYASKPSRCRKLHNLAGSVIILDEAQMLPVKYLNPCLRALEELAENYQASIVLCTA 391

Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275
           +             +         +      + +   F    +   G 
Sbjct: 392 TQP------ALRKRDDFKHGLDGVREIAPEPKRMHREFLRTRLKDAGR 433


>gi|329943344|ref|ZP_08292118.1| exodeoxyribonuclease V, alpha subunit [Chlamydophila psittaci
           Cal10]
 gi|332287920|ref|YP_004422821.1| exodeoxyribonuclease V subunit alpha [Chlamydophila psittaci 6BC]
 gi|313848493|emb|CBY17497.1| exodeoxyribonuclease V alpha chain [Chlamydophila psittaci RD1]
 gi|325506621|gb|ADZ18259.1| exodeoxyribonuclease V subunit alpha [Chlamydophila psittaci 6BC]
 gi|328814891|gb|EGF84881.1| exodeoxyribonuclease V, alpha subunit [Chlamydophila psittaci
           Cal10]
 gi|328915185|gb|AEB56018.1| exodeoxyribonuclease V, alpha subunit [Chlamydophila psittaci 6BC]
          Length = 504

 Score = 39.5 bits (90), Expect = 0.73,   Method: Composition-based stats.
 Identities = 18/138 (13%), Positives = 39/138 (28%), Gaps = 5/138 (3%)

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124
              + V +         I  G G GKT L   +++ LI   P + I  ++ +      + 
Sbjct: 138 QEQNEVFHKAVNSCFSLICGGPGTGKTFLAVQIIIALIKQYPKIRIAIVSPTGK--ATSH 195

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
              +     +       +     L    ++       + +D          +S     + 
Sbjct: 196 IRHILSKHHISESSVTIQTIHRFLQEHAYHQCASFDLLLVDEGSMVTFSLLHSLVNTLSG 255

Query: 185 VGPHNT---HGMAVFNDE 199
              H       + +  DE
Sbjct: 256 ENKHGKIIADNLIILGDE 273


>gi|312383231|gb|EFR28397.1| hypothetical protein AND_03789 [Anopheles darlingi]
          Length = 2300

 Score = 39.5 bits (90), Expect = 0.73,   Method: Composition-based stats.
 Identities = 14/125 (11%), Positives = 31/125 (24%), Gaps = 9/125 (7%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               + A  G GKTT+  + +L L+S  P   ++ +   +   +        +W       
Sbjct: 1378 NVFVGAPTGSGKTTIAEFAVLRLLSQNPAGRVVYLVAKDALAEII----FHEWHQRFGQS 1433

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                                +  +    +    T   +           +  +      D
Sbjct: 1434 AL-----GCKVVKLTGETGTDLKLIAKGQIIVTTADKWDVLSRRWKQRKNVQNVQLFIVD 1488

Query: 199  EASGT 203
            E    
Sbjct: 1489 ELQLI 1493


>gi|303318869|ref|XP_003069434.1| SNF2 family N-terminal domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240109120|gb|EER27289.1| SNF2 family N-terminal domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 1688

 Score = 39.5 bits (90), Expect = 0.73,   Method: Composition-based stats.
 Identities = 23/188 (12%), Positives = 46/188 (24%), Gaps = 17/188 (9%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G+GKT  +  +M +L           +    + L N    E+ K++  L    ++     
Sbjct: 824 GLGKTVQSISVMAYLAEVHDIWGPFLVVAPSSTLHN-WQQEIVKFVPDLKVLPYWGSAKD 882

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                 +      +++    +       T  +                +  DEA      
Sbjct: 883 RKVLRKF---WDRRNITYRKQSEFHVLVTSYQLVVGDAQYFQKIKWQYMILDEAQAIKSS 939

Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW---KRYQIDTRTVEGIDS 263
              S       ++     ++T            I N   E W                 S
Sbjct: 940 Q-SSRWKSLLGMHCRNRLLLTGTP---------IQNNMQELWALLHFIMPTLFDSHDEFS 989

Query: 264 GFHEGIIS 271
            +    I 
Sbjct: 990 EWFSKDIE 997


>gi|258572046|ref|XP_002544805.1| potential DNA-dependent ATPase Ino80p [Uncinocarpus reesii 1704]
 gi|237905075|gb|EEP79476.1| potential DNA-dependent ATPase Ino80p [Uncinocarpus reesii 1704]
          Length = 1668

 Score = 39.5 bits (90), Expect = 0.73,   Method: Composition-based stats.
 Identities = 23/188 (12%), Positives = 46/188 (24%), Gaps = 17/188 (9%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G+GKT  +  +M +L           +    + L N    E+ K++  L    ++     
Sbjct: 832  GLGKTVQSISVMAYLAEVHDIWGPFLVVAPSSTLHN-WQQEIVKFVPDLKVLPYWGSAKD 890

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                  +      +++    +       T  +                +  DEA      
Sbjct: 891  RKVLRKF---WDRRNITYRKQSEFHVLVTSYQLVVGDAQYFQKIKWQYMILDEAQAIKSS 947

Query: 207  INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW---KRYQIDTRTVEGIDS 263
               S       ++     ++T            I N   E W                 S
Sbjct: 948  Q-SSRWKSLLGMHCRNRLLLTGTP---------IQNNMQELWALLHFIMPTLFDSHDEFS 997

Query: 264  GFHEGIIS 271
             +    I 
Sbjct: 998  EWFSKDIE 1005


>gi|282599774|ref|ZP_05971828.2| terminase, ATPase subunit [Providencia rustigianii DSM 4541]
 gi|282567779|gb|EFB73314.1| terminase, ATPase subunit [Providencia rustigianii DSM 4541]
          Length = 594

 Score = 39.5 bits (90), Expect = 0.73,   Method: Composition-based stats.
 Identities = 38/340 (11%), Positives = 79/340 (23%), Gaps = 52/340 (15%)

Query: 42  GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101
                      ++  E +     H  +N+  S        I   R IG T   A+     
Sbjct: 137 DISNLTADDFQKFADEMLFGYQKHLRANITKSVRN-----ILKSRQIGATWYFAFEAFED 191

Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
                G   + ++ S+ Q       EV +   +     +F +              L   
Sbjct: 192 ACLT-GKPQLFLSASKPQA------EVFRSYIVNIAEKFFGVTLTGNPIRLSNGAELRFL 244

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221
               +   + +   Y +E                    A  T D    +     +     
Sbjct: 245 STNKNTAQSYSGHLYCDEYFWVPDFKRFNE-----VSSAMATHDHWRTTYFSTPSAKTHP 299

Query: 222 RFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL------ 275
            +   T +  R +         P   +   +   R        +   +            
Sbjct: 300 AYPFWTGDEWRGSDPARKKVKFPQ--FDELRDGGRDCPDGQWRYVITLEDAIKGGFNLAS 357

Query: 276 --------DSDVARIEILGQFPQQEVNNFIPHNYIEEA-----MSREAIDDLYAPL---- 318
                   + D   +  +  F      +   ++ +++      +  +   D   P     
Sbjct: 358 IERLRNKYNPDSFNMLFMCVFVDSGA-SVFKYHQLDKCGVDVHLWEDHNPDAPRPFGDRE 416

Query: 319 IMG-CDIAGEGGDKTVVVFR-------RGNIIEHIFDWSA 350
           + G  D A  G D +                +  IF W  
Sbjct: 417 VWGGFDPARSG-DTSTFAIVAPPMMAPEVFRVLAIFYWQG 455


>gi|221070358|gb|ACL99059.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 39.5 bits (90), Expect = 0.73,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTSATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|221070331|gb|ACL99046.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 39.5 bits (90), Expect = 0.73,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTSATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|88860256|ref|ZP_01134894.1| ATP-dependent RNA helicase [Pseudoalteromonas tunicata D2]
 gi|88817454|gb|EAR27271.1| ATP-dependent RNA helicase [Pseudoalteromonas tunicata D2]
          Length = 408

 Score = 39.5 bits (90), Expect = 0.73,   Method: Composition-based stats.
 Identities = 31/308 (10%), Positives = 69/308 (22%), Gaps = 41/308 (13%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-----SII 111
           +                         SA  G GKT       +  +   P        ++
Sbjct: 18  KAGYKTPTSIQQLAIPEAMAGRDILASAPTGTGKTAAFLLPSIQYLLDFPRRDPGFARVL 77

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +  +                       +     L +                +  +  +
Sbjct: 78  IMTPTRELAYQI--------HEQCVL--FAANTHLKIGVVTGGINYGSHKDIFEKNNDIL 127

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS-ILGFFTELNPNRFWIMTSNT 230
                           H  +   +  DEA    D+  +S ++    E    R   + S T
Sbjct: 128 IATPGRLMDYMKTEEFHAENVEILILDEADRMLDMGFRSEMMKICDEATNRRQCFLFSAT 187

Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTR-------------TVEGIDSGFHEGIISRYGLDS 277
              +        I  +        +R                       E I+    +  
Sbjct: 188 LEGDSVERFADTILNDPALLEAESSRKEQGKILQWVHLADSRNHKLDLLEAILKAEDMSK 247

Query: 278 DVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL-----------YAPLIMGCDIAG 326
            +  ++   +  ++ V   +  +     +  E   D             A +++  D+A 
Sbjct: 248 AIVFVKTR-EKLEELVGLLVARDIKTAWLRGEMPQDKRMAAMANFQSGRANILVATDVAA 306

Query: 327 EGGDKTVV 334
            G D T +
Sbjct: 307 RGIDVTDI 314


>gi|238879929|gb|EEQ43567.1| hypothetical protein CAWG_01805 [Candida albicans WO-1]
          Length = 1388

 Score = 39.5 bits (90), Expect = 0.74,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 54/222 (24%), Gaps = 25/222 (11%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            +QL+ +  +       +N               G+GKT + +  +L  ++    M    
Sbjct: 675 EYQLKGLNWLANLYEQGINGILADEM--------GLGKT-VQSISVLAYLAETYNMWGPF 725

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           +  +     +    E++K++       ++           +      +S+  D       
Sbjct: 726 LVVTPASTLHNWQQEITKFVPEFKVLPYWGNAKDRKILRKF---WDRKSLRYDKDSPFHV 782

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232
             T  +                +  DEA         S       L      ++T     
Sbjct: 783 LVTSYQLIVADIAYFQKMKWQYMILDEAQAIKSSS-SSRWKSLLNLTCRNRLLLTGTP-- 839

Query: 233 LNGWFYDIFNIPLEDW---KRYQIDTRTVEGIDSGFHEGIIS 271
                  I N   E W                 S +    I 
Sbjct: 840 -------IQNSMQELWALLHFIMPSIFDSHDEFSDWFAKDIE 874


>gi|242215360|ref|XP_002473496.1| predicted protein [Postia placenta Mad-698-R]
 gi|220727397|gb|EED81317.1| predicted protein [Postia placenta Mad-698-R]
          Length = 811

 Score = 39.5 bits (90), Expect = 0.74,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 58/241 (24%), Gaps = 19/241 (7%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG--- 107
           P     +    +        N      F    +A  G GKT L    ++ ++    G   
Sbjct: 1   PIPVSADVYRGMFKF--GVFNAVQSQCFDIVCAAPTGSGKTVLFELAIIRMLMQSGGNSN 58

Query: 108 -MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
               I IA ++           +K+ ++  +       ++ L  + W        M  + 
Sbjct: 59  TSKCIYIAPTKALCSEKCREWTTKFQALGVNCCELTGDTVQLGKNAWGNARDASIMYGEK 118

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT-----ELNPN 221
                  R++                     DE     +    ++    +       +  
Sbjct: 119 WDSL--TRSWRRHGQILSQ------IQLFLIDEVHILNESRGSTLEVVLSRMKARGSSVR 170

Query: 222 RFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR 281
              +  +     +   +     P       Q          S F  G   +   +  V +
Sbjct: 171 FVVVSATVPNIKDVASWIGDGTPDGSATVMQFGEEFRPCRLSKFVYGFFRKREQNDFVFQ 230

Query: 282 I 282
            
Sbjct: 231 T 231


>gi|165975771|ref|YP_001651364.1| ATP-dependent helicase HepA [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|254789671|sp|B0BT63|RAPA_ACTPJ RecName: Full=RNA polymerase-associated protein rapA; AltName:
           Full=ATP-dependent helicase hepA
 gi|165875872|gb|ABY68920.1| RNA polymerase associated protein [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 969

 Score = 39.5 bits (90), Expect = 0.74,   Method: Composition-based stats.
 Identities = 20/172 (11%), Positives = 45/172 (26%), Gaps = 5/172 (2%)

Query: 33  MRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTI-FKCAISAGRGIGKT 91
                +         F  P R       ++  H           +  +  ++   G+GKT
Sbjct: 123 RFALRYRALQHQQAQFQSPLRGMRGIRASLIPHQLHIAKEVGQRVAPRVLLADEVGLGKT 182

Query: 92  TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151
                ++   + +     ++ +     Q +   W  V            F+ +  +    
Sbjct: 183 IEAGMILQQQLFSGRVERVLVLVPESLQHQ---W-LVEMLRRFNLKFSLFDEERCADFDK 238

Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
                        DS+   I    + E  P+       ++   +  DEA   
Sbjct: 239 ADEDGNDVSENPFDSEALVIASIDWLESSPNRAKQVLASNWDMLIVDEAHHL 290


>gi|68491912|ref|XP_710254.1| potential DNA-dependent ATPase Ino80p [Candida albicans SC5314]
 gi|68491929|ref|XP_710247.1| potential DNA-dependent ATPase Ino80p [Candida albicans SC5314]
 gi|74679547|sp|Q59KI4|INO80_CANAL RecName: Full=Putative DNA helicase INO80
 gi|46431413|gb|EAK90982.1| potential DNA-dependent ATPase Ino80p [Candida albicans SC5314]
 gi|46431421|gb|EAK90989.1| potential DNA-dependent ATPase Ino80p [Candida albicans SC5314]
          Length = 1387

 Score = 39.5 bits (90), Expect = 0.74,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 54/222 (24%), Gaps = 25/222 (11%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            +QL+ +  +       +N               G+GKT + +  +L  ++    M    
Sbjct: 674 EYQLKGLNWLANLYEQGINGILADEM--------GLGKT-VQSISVLAYLAETYNMWGPF 724

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           +  +     +    E++K++       ++           +      +S+  D       
Sbjct: 725 LVVTPASTLHNWQQEITKFVPEFKVLPYWGNAKDRKILRKF---WDRKSLRYDKDSPFHV 781

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232
             T  +                +  DEA         S       L      ++T     
Sbjct: 782 LVTSYQLIVADIAYFQKMKWQYMILDEAQAIKSSS-SSRWKSLLNLTCRNRLLLTGTP-- 838

Query: 233 LNGWFYDIFNIPLEDW---KRYQIDTRTVEGIDSGFHEGIIS 271
                  I N   E W                 S +    I 
Sbjct: 839 -------IQNSMQELWALLHFIMPSIFDSHDEFSDWFAKDIE 873


>gi|327295602|ref|XP_003232496.1| DNA replication helicase Dna2 [Trichophyton rubrum CBS 118892]
 gi|326465668|gb|EGD91121.1| DNA replication helicase Dna2 [Trichophyton rubrum CBS 118892]
          Length = 1591

 Score = 39.5 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 32/120 (26%), Gaps = 7/120 (5%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS--MLPHRHWFEMQ 144
            G GKTT  A ++        G S++  + + T + N L            L        +
Sbjct: 1089 GTGKTTTIAQII--RALVSQGKSVLLTSYTHTAVDNILLKIRDDKYRILRLGTPSKVHPE 1146

Query: 145  SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                       +   + +    ++  +   T            +         DEAS   
Sbjct: 1147 VQQFAEMAATPKNTIEELEDSYENSKVVATTCLGVNH---RIFNTRTFDYCIVDEASQIT 1203


>gi|255523170|ref|ZP_05390141.1| type III restriction protein res subunit [Clostridium
           carboxidivorans P7]
 gi|296186136|ref|ZP_06854541.1| type III restriction enzyme, res subunit [Clostridium
           carboxidivorans P7]
 gi|255513038|gb|EET89307.1| type III restriction protein res subunit [Clostridium
           carboxidivorans P7]
 gi|296049404|gb|EFG88833.1| type III restriction enzyme, res subunit [Clostridium
           carboxidivorans P7]
          Length = 752

 Score = 39.5 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 53/183 (28%), Gaps = 8/183 (4%)

Query: 54  WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM-LWLISTRPGMSIIC 112
           +Q + +  +    +  + N+        + A  G GKT + +  + +           I 
Sbjct: 7   YQKKAVRELVDKTNRLLKNNEKKKV-LVLKAPTGSGKTVIASKYIEMVSKLQDKDFCFIW 65

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           I+  +  L      ++S  L   P     E              ++        K+    
Sbjct: 66  ISIGKGHLHEQSKNKISSILEGSPPCKLLEDVIRYGIIKRNAIVVVNWEKLNTKKNGAWD 125

Query: 173 CRTYSEERPDTF----VGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
                E     F        +   + +  DE+  T D   ++       +NP     M++
Sbjct: 126 NVLMREGDGINFLKLLENTSSARKIILIVDESHNTTDT--RTSRELMNIINPEILLEMSA 183

Query: 229 NTR 231
             +
Sbjct: 184 TPK 186


>gi|253583367|ref|ZP_04860565.1| helicase [Fusobacterium varium ATCC 27725]
 gi|251833939|gb|EES62502.1| helicase [Fusobacterium varium ATCC 27725]
          Length = 1624

 Score = 39.5 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 17/152 (11%), Positives = 46/152 (30%), Gaps = 17/152 (11%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +      N            +    G GKT   A ++   ++   G +++  ++++  L
Sbjct: 365 EIAEKIERNNA--------VVVQGPPGTGKTHTIANLLGHFLAQ--GKNVLVTSHTKKAL 414

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSL-------HPSGWYAELLEQSMGIDSKHYTITC 173
           K            +       +   +           S + +E L++ + I  K   +  
Sbjct: 415 KVLKEKIPKNIQGLCISILDDDNSDMKRSIESISEKMSSFNSEDLKKDIEILKKDRVMIY 474

Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
             + + + +     +      ++N E     D
Sbjct: 475 EEFKKIKEEMLSIKYKESQSIIYNGEGISVKD 506


>gi|227540804|ref|ZP_03970853.1| type I restriction-modification system restriction subunit
           [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227183433|gb|EEI64405.1| type I restriction-modification system restriction subunit
           [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 1004

 Score = 39.5 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 57/200 (28%), Gaps = 16/200 (8%)

Query: 3   RLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAV 62
           +  ++    +    + L+  + +  F  FV    P G   K  +    P   QL+ + A+
Sbjct: 232 KYKTSYLWEQVLAKDSLL--DILHRFVQFVPGKTPEGRPAKSKDKVIFPRFHQLDAVRAL 289

Query: 63  DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG-MSIICIANSETQLK 121
                 N    N  +   A     G GK+   AW+   L +       ++  +      +
Sbjct: 290 VADAKDNGAGKNYLVQHSA-----GSGKSNTIAWLAHHLSNLHDDEQRVVFDSIIVITDR 344

Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
             L  ++   +        F M   +           + +  +      I          
Sbjct: 345 RVLDKQLQDTV--------FSMDHTAGVVVKVDKNARQLTEALGRGARIIISTLQKFPFV 396

Query: 182 DTFVGPHNTHGMAVFNDEAS 201
           D           AV  DEA 
Sbjct: 397 DVSNIATAGKHFAVIVDEAH 416


>gi|169635115|gb|ACA58333.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 39.5 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAVVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|169635107|gb|ACA58329.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 39.5 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAVVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|169143914|gb|ACA48831.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 39.5 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAVVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|108760236|ref|YP_635133.1| CRISPR-associated helicase Cas3 [Myxococcus xanthus DK 1622]
 gi|108464116|gb|ABF89301.1| CRISPR-associated helicase Cas3 [Myxococcus xanthus DK 1622]
          Length = 767

 Score = 39.5 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 45/162 (27%), Gaps = 9/162 (5%)

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL--WAEVSKWL 132
           P +F   +    G GKT  +    L    T+    +I      + ++ +   + +  + L
Sbjct: 276 PGVFSLTV--PTGGGKTLTSMAFALEHARTQGLQRVIVAIPYTSIIEQSAEAYRQAFQGL 333

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
                 H   +      P    A     +  I +    +    +   RP      H    
Sbjct: 334 EHAVIEHHSAVDPDRETPLNRVASENWDAPIIVTTTVQLLESLF-ARRPSACRKLHRVAR 392

Query: 193 MAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNT 230
             +  DEA   P    + I   +     +   +      +  
Sbjct: 393 SVIVLDEAQTLPASLLEPILDGLGALVRDYGCSVVICTATQP 434


>gi|118580907|ref|YP_902157.1| PhoH family protein [Pelobacter propionicus DSM 2379]
 gi|118503617|gb|ABL00100.1| PhoH family protein [Pelobacter propionicus DSM 2379]
          Length = 438

 Score = 39.5 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 46/154 (29%), Gaps = 10/154 (6%)

Query: 87  GIGKTTLN-AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
           G GKT L  A  +  +        ++         K+ L          L    W +   
Sbjct: 254 GTGKTLLAIAAGLHKVAEDNVYNRLLVSRPVFPMGKD-LGFLPGDIEEKL--TPWMQPIF 310

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
            ++       E  +        +  +      +  P T++   +     +  DEA     
Sbjct: 311 DNVELLISGHEAEK---RHSKGYKELMAMGLLDIEPLTYIRGRSIPNQYLIVDEAQNLTP 367

Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
              K+I    T +      I+T +  +++  + D
Sbjct: 368 HEIKTI---VTRVGEGTKIILTGDPYQIDNPYVD 398


>gi|322392316|ref|ZP_08065777.1| hypothetical protein HMPREF9180_1167 [Streptococcus peroris ATCC
           700780]
 gi|321144851|gb|EFX40251.1| hypothetical protein HMPREF9180_1167 [Streptococcus peroris ATCC
           700780]
          Length = 885

 Score = 39.5 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 21/245 (8%), Positives = 54/245 (22%), Gaps = 30/245 (12%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q + ++    +      +         ++A  G GKTT+        +  R     +
Sbjct: 15  RNYQKQVLDNFQEYQADGHVH--------LVAAP-GSGKTTIG-----IELIARFDKPAL 60

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI--DSKHY 169
            +  +   ++      + +      ++    +               +         +  
Sbjct: 61  VLVPT-VTIREQWVDRIRQAFLEDENQITSLVSQNLKDMKQITIATYQAFHSAMQQVQSQ 119

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                       D            +  DE     +   KS+  F       +   +T+ 
Sbjct: 120 EDNGEVEDFVGFDLLARLKERGVETLCLDECHHLRNEWWKSLEDFRKNYQQLQVISLTAT 179

Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289
               +            D           E       +        D       +   FP
Sbjct: 180 PPYDSEPELW-------DRYLQMCGEIDQEITVPELVKEDTLCPHQD------FVYICFP 226

Query: 290 QQEVN 294
            +E +
Sbjct: 227 TKEED 231


>gi|307184505|gb|EFN70894.1| Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
            [Camponotus floridanus]
          Length = 2140

 Score = 39.5 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 48/220 (21%), Gaps = 28/220 (12%)

Query: 47   HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
             F Q +  Q +   AV                   + A  G GKTT+  + +L L++   
Sbjct: 1317 EFPQFNPIQTQVFNAVYNSDD-----------NVFVGAPTGSGKTTIAEFAVLRLLTQNS 1365

Query: 107  GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
                + + + E   +         W         F  Q              +  +    
Sbjct: 1366 EGRCVYMVSKEALAELVY----DDWAKK------FGQQLGRKVVLLTGETGTDLKLLAKG 1415

Query: 167  KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL-------N 219
            +    T   +           +  +      DE           +    +         +
Sbjct: 1416 QIIITTADKWDVLSRRWKQRKNVQNIQLFIVDELQLIGGEEGPVLEVACSRARYISSQLD 1475

Query: 220  PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
                 I  S +             P      +    R V 
Sbjct: 1476 KPTRIIALSASLGDAKDAAQWLGAPAAATFNFHPSVRPVP 1515


>gi|241958618|ref|XP_002422028.1| DNA helicase, putative [Candida dubliniensis CD36]
 gi|223645373|emb|CAX40029.1| DNA helicase, putative [Candida dubliniensis CD36]
          Length = 1366

 Score = 39.5 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 54/222 (24%), Gaps = 25/222 (11%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            +QL+ +  +       +N               G+GKT + +  +L  ++    M    
Sbjct: 656 EYQLKGLNWLANLYEQGINGILADEM--------GLGKT-VQSISVLAYLAETYNMWGPF 706

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           +  +     +    E++K++       ++           +      +S+  D       
Sbjct: 707 LVVTPASTLHNWQQEITKFVPEFKVLPYWGNAKDRKILRKF---WDRKSLRYDKDSPFHV 763

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232
             T  +                +  DEA         S       L      ++T     
Sbjct: 764 LVTSYQLIVADIAYFQKMKWQYMILDEAQAIKSSS-SSRWKSLLNLTCRNRLLLTGTP-- 820

Query: 233 LNGWFYDIFNIPLEDW---KRYQIDTRTVEGIDSGFHEGIIS 271
                  I N   E W                 S +    I 
Sbjct: 821 -------IQNSMQELWALLHFIMPSIFDSHDEFSDWFAKDIE 855


>gi|160903308|ref|YP_001568889.1| CRISPR-associated helicase Cas3 [Petrotoga mobilis SJ95]
 gi|160360952|gb|ABX32566.1| CRISPR-associated helicase Cas3 [Petrotoga mobilis SJ95]
          Length = 730

 Score = 39.5 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 32/261 (12%), Positives = 64/261 (24%), Gaps = 15/261 (5%)

Query: 27  SFKNFVMRFFPWGIKGKPLEHF--SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISA 84
              NF    +      K LE    +    W+ +  E+      +    S P I+   +  
Sbjct: 187 DRINFDKISYQQDRFDKFLESLPKNHLSDWKNKIRES---TLSNVDTISEPGIYTITL-- 241

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
             G GKT       + L +     +II +    + +     +EV+K +          + 
Sbjct: 242 PTGAGKTLTGLQASMKLANKLSLKTIIYVLPFISIVDQN--SEVAKKIYDKVQEDHHLVS 299

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRT-----YSEERPDTFVGPHNTHGMAVFNDE 199
           +          E    S     +   +T              +  +  H      V  DE
Sbjct: 300 ASKEKEDLDNLERFILSFRYFKEPLIVTTLAKFWEVLYSPNANDSMSFHRLKDAVVILDE 359

Query: 200 ASGTPDIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
               P    +      +        + +     +                K         
Sbjct: 360 PQSIPPEYWQGFGETMSFLSKKMGTYFILMTATQPKIAEGKELAPKSSFPKNRHCYNIVN 419

Query: 259 EGIDSGFHEGIISRYGLDSDV 279
           E I     +   +    +S +
Sbjct: 420 EKIKLSDIKQFTADRTDNSSL 440


>gi|325968164|ref|YP_004244356.1| reverse gyrase [Vulcanisaeta moutnovskia 768-28]
 gi|323707367|gb|ADY00854.1| reverse gyrase [Vulcanisaeta moutnovskia 768-28]
          Length = 1263

 Score = 39.5 bits (90), Expect = 0.76,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 32/132 (24%), Gaps = 7/132 (5%)

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126
                         AI A  G GKTT      L++   R    ++ +  + T   +    
Sbjct: 90  QRLWTRRLIKGKSFAIVAPTGSGKTTFGMMASLYIAL-RKRSKVLIVVPTSTLAYDV-HR 147

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
            +S++   +       M S  L+       +     G                       
Sbjct: 148 RLSEYSGKMNSNIRIIMASSILYKQELIDAMNAIENGDFDILIITNAFLPRH-----MDL 202

Query: 187 PHNTHGMAVFND 198
                   +F D
Sbjct: 203 LRKYRFSLIFVD 214


>gi|298674426|ref|YP_003726176.1| hypothetical protein Metev_0465 [Methanohalobium evestigatum
           Z-7303]
 gi|298287414|gb|ADI73380.1| protein of unknown function DUF450 [Methanohalobium evestigatum
           Z-7303]
          Length = 988

 Score = 39.5 bits (90), Expect = 0.76,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 57/228 (25%), Gaps = 28/228 (12%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---- 106
           P   QL+ + ++  +   N         +  +    G GK+   AW+   L         
Sbjct: 266 PRYHQLKAVNSMIENARLNGPGH-----RYLVQHSTGSGKSFTIAWLCNKLSGLHDENNN 320

Query: 107 ---GMSIICI--ANSETQLKNTLW-----AEVSKWLSMLPHRHWFEM---QSLSLHPSGW 153
                 I+       + QL +T++         +W+         +     +  +     
Sbjct: 321 RIFDSIIVITDRRVLDQQLSSTMFEFEQVRGTVEWIDSNKKSEQLKQALESNKEIIVVTL 380

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV------FNDEASGTPDII 207
                                        +      +  + V      + DE     + +
Sbjct: 381 QTFPFLVDEANQLSDRNFAIVVDEAHSSQSGETARGSRKVLVSADDVQYEDEMEKDVEDV 440

Query: 208 NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255
             S +        N  +   + T +          +P   ++ Y + +
Sbjct: 441 INSEIEKTVGPAKNISYFAFTATPKQKTLELFGTKMPDGSYEPYHLYS 488


>gi|256374708|ref|YP_003098368.1| hypothetical protein Amir_0555 [Actinosynnema mirum DSM 43827]
 gi|255919011|gb|ACU34522.1| hypothetical protein Amir_0555 [Actinosynnema mirum DSM 43827]
          Length = 478

 Score = 39.5 bits (90), Expect = 0.76,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 18/45 (40%)

Query: 68  SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
                      + A++ G G GK+TL + ++   ++  P  +   
Sbjct: 45  RGHRARFAEPVRVAVAGGHGTGKSTLVSALVGEELTAPPTATAWY 89


>gi|222615621|gb|EEE51753.1| hypothetical protein OsJ_33185 [Oryza sativa Japonica Group]
          Length = 726

 Score = 39.5 bits (90), Expect = 0.76,   Method: Composition-based stats.
 Identities = 22/209 (10%), Positives = 51/209 (24%), Gaps = 25/209 (11%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q +F+E                     ++   G+GKT + A +M       P   I+
Sbjct: 249 REYQKKFVEK-------------ALFTNTLVALPTGLGKTFIAAVVMYNYFRWFPEGKIV 295

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A +           V++ +    +      +   +   G  +           + + +
Sbjct: 296 FTAPTR--------PLVTQQIEACHNTVGIPQEWT-IDLKGNLSPSKRSCFWKSKRVFFV 346

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK-SILGFFTELNPNRFWIMTSNT 230
           T +    +             + +  DEA           ++            +  + T
Sbjct: 347 TPQVLQNDIQSGICMV--NQLVCLVIDEAHRASRNYAYCVVVRELEAARVPLRILALTAT 404

Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
                         L   +    D    E
Sbjct: 405 PGSKQPAIQNVINNLRISELVHCDESDPE 433


>gi|218185362|gb|EEC67789.1| hypothetical protein OsI_35346 [Oryza sativa Indica Group]
          Length = 648

 Score = 39.5 bits (90), Expect = 0.76,   Method: Composition-based stats.
 Identities = 22/209 (10%), Positives = 51/209 (24%), Gaps = 25/209 (11%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q +F+E                     ++   G+GKT + A +M       P   I+
Sbjct: 171 REYQKKFVEK-------------ALFTNTLVALPTGLGKTFIAAVVMYNYFRWFPEGKIV 217

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A +           V++ +    +      +   +   G  +           + + +
Sbjct: 218 FTAPTR--------PLVTQQIEACHNTVGIPQEWT-IDLKGNLSPSKRSCFWKSKRVFFV 268

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK-SILGFFTELNPNRFWIMTSNT 230
           T +    +             + +  DEA           ++            +  + T
Sbjct: 269 TPQVLQNDIQSGICMV--NQLVCLVIDEAHRASRNYAYCVVVRELEAARVPLRILALTAT 326

Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
                         L   +    D    E
Sbjct: 327 PGSKQPAIQNVINNLRISELVHCDESDPE 355


>gi|217977592|ref|YP_002361739.1| double-strand break repair helicase AddA [Methylocella silvestris
           BL2]
 gi|217502968|gb|ACK50377.1| double-strand break repair helicase AddA [Methylocella silvestris
           BL2]
          Length = 1151

 Score = 39.5 bits (90), Expect = 0.76,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 36/132 (27%), Gaps = 7/132 (5%)

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA-WMMLWLISTRPGMSIICIANSE 117
           + A+          ++       +SA  G GKT + A  ++  L+   P   I+C+  ++
Sbjct: 3   LAAISPQTLQKQREASDPAASVWVSANAGSGKTHVLAQRVVRLLLQGTPPSKILCLTFTK 62

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
               N      +          W  +    L  +               +   +  RT  
Sbjct: 63  AAAANMSMRVFNTLAR------WTALDDAELRRAIVATGAPSPDWREMREARKLFARTVE 116

Query: 178 EERPDTFVGPHN 189
                     H 
Sbjct: 117 TPGGLKIQTIHA 128


>gi|124022672|ref|YP_001016979.1| exodeoxyribonuclease V 67 kD polypeptide [Prochlorococcus marinus
           str. MIT 9303]
 gi|123962958|gb|ABM77714.1| possible exodeoxyribonuclease V 67 kD polypeptide [Prochlorococcus
           marinus str. MIT 9303]
          Length = 576

 Score = 39.5 bits (90), Expect = 0.76,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 45/138 (32%), Gaps = 25/138 (18%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             +S G G GKT+    M+   ++ RPG+ I   A +    +  L   V K L  +P   
Sbjct: 155 VLLSGGPGTGKTSTIVQMLARAVTLRPGLRIGLAAPTGKAAR-RLEEAVRKGLEAIPPTQ 213

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF--VGPHNTHGMAVFN 197
              + SL                         T   + + RP  F     H      +  
Sbjct: 214 RQALTSLP----------------------CSTLHRWLQARPGGFGRHQQHPLMLDLLVI 251

Query: 198 DEASGTPDIINKSILGFF 215
           DE S     + +++L   
Sbjct: 252 DEMSMVELSLMQALLSAL 269


>gi|62734194|gb|AAX96303.1| Similar to probable ATP-dependent RNA helicase - fission yeast
           (Schizosaccharomyces pombe) [Oryza sativa Japonica
           Group]
 gi|77548994|gb|ABA91791.1| Type III restriction enzyme, res subunit family protein, expressed
           [Oryza sativa Japonica Group]
          Length = 1488

 Score = 39.5 bits (90), Expect = 0.76,   Method: Composition-based stats.
 Identities = 22/209 (10%), Positives = 51/209 (24%), Gaps = 25/209 (11%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q +F+E                     ++   G+GKT + A +M       P   I+
Sbjct: 249 REYQKKFVEK-------------ALFTNTLVALPTGLGKTFIAAVVMYNYFRWFPEGKIV 295

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A +           V++ +    +      +   +   G  +           + + +
Sbjct: 296 FTAPTR--------PLVTQQIEACHNTVGIPQEWT-IDLKGNLSPSKRSCFWKSKRVFFV 346

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK-SILGFFTELNPNRFWIMTSNT 230
           T +    +             + +  DEA           ++            +  + T
Sbjct: 347 TPQVLQNDIQSGICMV--NQLVCLVIDEAHRASRNYAYCVVVRELEAARVPLRILALTAT 404

Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
                         L   +    D    E
Sbjct: 405 PGSKQPAIQNVINNLRISELVHCDESDPE 433


>gi|167854769|ref|ZP_02477547.1| type III restriction enzyme, res subunit [Haemophilus parasuis
           29755]
 gi|167854067|gb|EDS25303.1| type III restriction enzyme, res subunit [Haemophilus parasuis
           29755]
          Length = 1121

 Score = 39.5 bits (90), Expect = 0.77,   Method: Composition-based stats.
 Identities = 33/322 (10%), Positives = 85/322 (26%), Gaps = 49/322 (15%)

Query: 39  GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98
                    F     +Q + ++AV+ +                ++   G GKT     ++
Sbjct: 392 QKLENEPFDFLGLRPYQEKAIQAVEQNLSEGKRE-------MLLAMATGTGKTRTITGLI 444

Query: 99  LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
              + T     I+ + +                               +   +  Y   +
Sbjct: 445 HRFLKTDRFRRILFLVDRTALA------------EQAEDTFGGMNVEPNQTLNTLYNFAV 492

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218
              +  ++K    T ++  ++   +   P       +  DEA     +  +   G     
Sbjct: 493 NGVVEPETKVKVATVQSLVKQIFYSGEAPAIDQFDCIIVDEAHRGYTLDQEMTDGELEFQ 552

Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE--------------GIDSG 264
           +  ++    S  RR+  +F  +          +  +                    +D  
Sbjct: 553 DNEQY---LSTYRRVLDYFDAVKIGLTATPALHTKEIFGEPVFVYSYKEAVIDDYLVDHE 609

Query: 265 FHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE------EAMSREAIDDLYAPL 318
               I ++   D          +F        +     +      E+ +R  ++D +  +
Sbjct: 610 PPIEIKTKLNQDGIHFERGEQLEFIDTSTGEVVLSELADEQNFDVESFNRTVLNDSFNQV 669

Query: 319 IM-----GCDIAGEGGDKTVVV 335
           +        D    G +KT++ 
Sbjct: 670 VCEVLLDYLDP--FGSEKTLIF 689


>gi|169615567|ref|XP_001801199.1| hypothetical protein SNOG_10942 [Phaeosphaeria nodorum SN15]
 gi|160702991|gb|EAT81441.2| hypothetical protein SNOG_10942 [Phaeosphaeria nodorum SN15]
          Length = 1765

 Score = 39.5 bits (90), Expect = 0.77,   Method: Composition-based stats.
 Identities = 20/199 (10%), Positives = 55/199 (27%), Gaps = 25/199 (12%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           +P  WQ + ++ +D                  + A    GKT ++ + M  ++ +     
Sbjct: 718 EPDAWQRKVLDEIDA------------RRSLLVIAPTSAGKTFISFYAMKQVLESSNNDV 765

Query: 110 IICIANSETQLKNTLWAEVSKWLS--MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
           ++ +A ++  +        +++       +  W          +    ++L         
Sbjct: 766 LVYVAPTKALVNQIAAEVQARFSKNYKYANSVWGIHTRDYRINNPTGCQILVTV------ 819

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
            + +     +     ++    +     +  DE        +  I      +      I  
Sbjct: 820 PHILQIMLLAPSHAKSW----SERVKWIIFDEVHCIGQAEDGVIWEQLLLM-APCPIIAL 874

Query: 228 SNTRRLNGWFYDIFNIPLE 246
           S T      F D      +
Sbjct: 875 SATIGNADAFNDWLASTQK 893


>gi|117165153|emb|CAJ88709.1| putative DEAD/DEAH box helicase [Streptomyces ambofaciens ATCC
           23877]
          Length = 1992

 Score = 39.5 bits (90), Expect = 0.77,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 39/162 (24%), Gaps = 14/162 (8%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN-AWMMLWLISTRPGM 108
           +P   Q      +       V+            A  G GK+    A  + WL       
Sbjct: 383 EPRPAQQTMTTTLHDWTDRGVSGLLE--------APTGTGKSYAVLAAALDWLAGG--DS 432

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
               IA    QL++ +  ++      LP                  A L +       + 
Sbjct: 433 RTAVIATYTKQLQSQMAKDIQDLERALPGILGVADLVKGKSNRLSLAALTKTLAEAPRRR 492

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS 210
            +         +   F        + +    A+  P     +
Sbjct: 493 RSAGTARARFSQRSRFRELAVFLALRLL---AAKEPPQSWTA 531


>gi|118380994|ref|XP_001023659.1| hypothetical protein TTHERM_00732610 [Tetrahymena thermophila]
 gi|89305426|gb|EAS03414.1| hypothetical protein TTHERM_00732610 [Tetrahymena thermophila SB210]
          Length = 1342

 Score = 39.5 bits (90), Expect = 0.77,   Method: Composition-based stats.
 Identities = 26/269 (9%), Positives = 64/269 (23%), Gaps = 30/269 (11%)

Query: 67   HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126
                           +    G GKTT    ++L  +       I+  A S+  +      
Sbjct: 908  QQLAVEKAALNRITIVQGPPGSGKTTAAVEIVLEWLRAS-NQPILVTAESQGTVNIIYGE 966

Query: 127  EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF-- 184
             +   +  +     FE +   ++      +  E    + SK          E  P++   
Sbjct: 967  LIKANVKAVTIGPGFEDRLDHINEIISKPDGHEPIQKLTSKDGKHLAPKPQEYIPNSMKF 1026

Query: 185  ----------------------VGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222
                                        H   V  DEA+   + ++   +          
Sbjct: 1027 LILKKMLREAQVVCCTCQTVMADYLKGLHFTRVIIDEANTVSEPLSLIPIHRLCNQLVLI 1086

Query: 223  FWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI 282
               M S+ +  + +           +++          + + +                 
Sbjct: 1087 GDHMQSSPKSQSMFAQSKGMCMS-LFEKLISQGFKPHLLKTQYRVAANQMIFQSRYFYNN 1145

Query: 283  EILG----QFPQQEVNNFIPHNYIEEAMS 307
             +      +F  +      P+  I+  + 
Sbjct: 1146 MLENGIVEEFKPELRGFPWPNPAIKSCVI 1174


>gi|309359628|emb|CAP32447.2| CBR-MEL-46 protein [Caenorhabditis briggsae AF16]
          Length = 995

 Score = 39.5 bits (90), Expect = 0.77,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 45/156 (28%), Gaps = 9/156 (5%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             + A  G GKT + + + +  +  +        A+   ++  T   E+S  +     + 
Sbjct: 62  MLVQAKSGTGKTLVFSVLAVENLDLK--------AHYIQKVIITPTREISTQIKETVRKL 113

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                  S++  G   +L    +   ++   +        +         +H      DE
Sbjct: 114 TPAGARTSVYTGGIGHKLNVIDLK-KTRPQIVIGTPGRVAQLIRMGAMDISHVDFFVLDE 172

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
           A    D + K  +       P    +   +      
Sbjct: 173 ADKLMDEVFKPDINTIINSLPPIRQVAVFSATYPRN 208


>gi|297805512|ref|XP_002870640.1| DNA repair and transcription factor XPB1 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316476|gb|EFH46899.1| DNA repair and transcription factor XPB1 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 767

 Score = 39.5 bits (90), Expect = 0.77,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 50/171 (29%), Gaps = 21/171 (12%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
               L+  +QP  +Q + +  +  +  +             +    G GK+     ++  
Sbjct: 272 LDMELKPHAQPRPYQEKSLSKMFGNGRARSG--------IIVLPC-GAGKS-----LVGV 317

Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
             + R   S +C+A +   +    WA   K  S +         S S       A ++  
Sbjct: 318 SAAARIKKSCLCLATNAVSVDQ--WAYQFKLWSTIRDDQICRFTSDSKERFRGNAGVVVT 375

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211
           +               SEE         N     +  DE    P  + + +
Sbjct: 376 TYN-----MIAFGGKRSEEAEKIIEEMRNREWGLLLMDEVHVVPAHMFRKV 421


>gi|258647098|ref|ZP_05734567.1| DNA helicase [Prevotella tannerae ATCC 51259]
 gi|260853046|gb|EEX72915.1| DNA helicase [Prevotella tannerae ATCC 51259]
          Length = 1099

 Score = 39.5 bits (90), Expect = 0.77,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 35/149 (23%), Gaps = 7/149 (4%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           I    G GKT+     +L      P   ++  A +   +       V   L  +      
Sbjct: 683 IVGPPGTGKTSFGLMNILQEELLDPSALVLLTAYTNRAVDEICSKLVKANLDFVRIGKSI 742

Query: 142 EMQSL---SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
             +      L      A      +      + I   T S    +               D
Sbjct: 743 TCEPAYRPYLLEEQLQAANNLTDVSTIIGRHRIFVGTTSTLIANN-QLFLLRSFSLAIVD 801

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMT 227
           EAS   +     +L           W + 
Sbjct: 802 EASQFLEPQ---LLPLLAAQTRQGQWGIR 827


>gi|241948421|ref|XP_002416933.1| DNA repair protein RAD16-homologue, putative; RAD family
           ATP-dependent helicase, putative [Candida dubliniensis
           CD36]
 gi|223640271|emb|CAX44521.1| DNA repair protein RAD16-homologue, putative [Candida dubliniensis
           CD36]
          Length = 846

 Score = 39.5 bits (90), Expect = 0.77,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 53/209 (25%), Gaps = 12/209 (5%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G+GKT     + +   S  P + +                E+ K       +      + 
Sbjct: 263 GMGKTIQTIGLFMHDRSKGPNLVVGPTVALMQ-----WKNEIEKHTEPGMLKVLLYHGAN 317

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF----VGPHNTHGMAVFNDEASG 202
             +     ++                 + Y   R +         HN     V  DEA  
Sbjct: 318 RSNSIEELSQYDVILTSYSVLESVYRKQNYGFRRKNGLVKEKSAIHNIEFYRVILDEAHN 377

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNT--RRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
             D  + +           R W +T      R+   +  I  + L+ +  Y       + 
Sbjct: 378 IKDRNSNTSRAAGKLNTKKR-WCLTGTPLQNRIGEMYSLIRYMKLDPFHSYFCTKCDCKS 436

Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQFP 289
            D  F +G    +     +        F 
Sbjct: 437 EDWKFSDGRRCDFCQHPPMLHTNFFNHFM 465


>gi|156540980|ref|XP_001599298.1| PREDICTED: similar to ENSANGP00000009625 [Nasonia vitripennis]
          Length = 2129

 Score = 39.5 bits (90), Expect = 0.77,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 49/192 (25%), Gaps = 24/192 (12%)

Query: 41   KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
            +   +E F Q +  Q +   AV                   + A  G GKTT+  + +L 
Sbjct: 1308 ENLYVEKFPQFNPIQTQVFNAVYNSDD-----------NVFVGAPSGSGKTTIAEFAVLR 1356

Query: 101  LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
            LIS  P    + + + E   +        K+ S+         ++ +             
Sbjct: 1357 LISQNPDGRCVYMVSKEALAEIIYSDWAYKFKSLGKKVVLLTGETGTD-----------L 1405

Query: 161  SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220
             +   ++    T   +           +  +      DE           +    +    
Sbjct: 1406 KLLAKAQIIITTADKWDVLSRRWKQRKNVQNIQLFIIDELQLIGGEEGPVLEVACS--RA 1463

Query: 221  NRFWIMTSNTRR 232
                       R
Sbjct: 1464 RYISSQLDKPTR 1475


>gi|55820924|ref|YP_139366.1| DNA endonuclease, type III restriction and modification system
           [Streptococcus thermophilus LMG 18311]
 gi|55822846|ref|YP_141287.1| DNA endonuclease, type III restriction and modification system
           [Streptococcus thermophilus CNRZ1066]
 gi|55736909|gb|AAV60551.1| DNA endonuclease, type III restriction and modification system
           [Streptococcus thermophilus LMG 18311]
 gi|55738831|gb|AAV62472.1| DNA endonuclease, type III restriction and modification system
           [Streptococcus thermophilus CNRZ1066]
          Length = 928

 Score = 39.5 bits (90), Expect = 0.77,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 50/185 (27%), Gaps = 20/185 (10%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q + +            N    +F  A     G GKT L A ++L+L       + +
Sbjct: 49  RAYQDKAIRNYHYTQTQIKPNPQHVLFNMA----TGSGKTDLMAGLILYLYQEHGYRNFL 104

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS-----GWYAELLEQSMGIDS 166
              N+ + L  T    V++       +   E+    +            +     + + S
Sbjct: 105 FTVNTNSVLMKTKDNLVNENSEKYLFKDKIEIDGKHIFIKQVERFPRIQQDNTIYIKLSS 164

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP----------DIINKSILGFFT 216
                      +E         N   +AV  DEA              +    +I     
Sbjct: 165 VQKVSDDLFVLKENTMGLSDYENQ-PVAVLADEAHHYSASTKSEKEAENTWESAINKILR 223

Query: 217 ELNPN 221
             +  
Sbjct: 224 ARDDK 228


>gi|291516530|emb|CBK70146.1| TrwC relaxase [Bifidobacterium longum subsp. longum F8]
          Length = 1368

 Score = 39.5 bits (90), Expect = 0.78,   Method: Composition-based stats.
 Identities = 38/299 (12%), Positives = 70/299 (23%), Gaps = 46/299 (15%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
            +    G GKT +   +  +    R     + IA    +       EV            
Sbjct: 485 VVEGAAGAGKTHMLNAVNDY---CRENGKRLVIATPTQKAALVAGEEVG----------- 530

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT----FVGPHNTHGMAVF 196
                         A             +       S+ R +T               + 
Sbjct: 531 ---TGTGTLMRLLEAYGWRNDETDPEHPWYRVAEGQSDHRGNTYRGVPDEYRLDRDTFLV 587

Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256
            DEA         ++L    E        +  +T +LN           E +    +  R
Sbjct: 588 VDEAGMMDQDQALALLRVADETGARL--TLVGDTMQLNAVGRGGVMQLAERYTGNVVAMR 645

Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILGQF--------PQQEVNNF--IPHNYIEEA- 305
            V       +     R    +      + G+            +      I   ++E   
Sbjct: 646 DVHRFKDPDYAAYTIRLRERTPANAERLAGELFDRGMVRHWDSDEATVNAIAAAWMEHPD 705

Query: 306 ------MSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQ 358
                  +R+A +   A   +  D AG+ GD+       G  I         ++     
Sbjct: 706 TTISTVTNRQAAEVNRAIQRLRLD-AGQLGDERCASMIDGQEIHV-----GDIVMTRRN 758


>gi|39996461|ref|NP_952412.1| helicase [Geobacter sulfurreducens PCA]
 gi|39983341|gb|AAR34735.1| helicase, putative [Geobacter sulfurreducens PCA]
          Length = 1041

 Score = 39.5 bits (90), Expect = 0.78,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 60/186 (32%), Gaps = 29/186 (15%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM-LWLISTRPGMS 109
           PH +Q   +EA++         S    ++  + A  G GKT + A+    +    +    
Sbjct: 309 PHPFQERILEALE------RERSAHDRWRNLVIAATGTGKTVVAAFDFKRFYEQKQKQAK 362

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           ++ +A+ +      L   +  + ++L  +++ E+Q      +          M    + +
Sbjct: 363 LLFLAHRQ----EILQQALGTFRNILRDQNFGELQVGPYDATRLEHLFCSVGMLTSRRLW 418

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                                    +  DEA         S    F   +P     +T+ 
Sbjct: 419 EQVGP---------------DFYDYIVIDEAH---HGTAGSYRPIFNHFSPQILLGLTAT 460

Query: 230 TRRLNG 235
             R++G
Sbjct: 461 PERMDG 466


>gi|312622203|ref|YP_004023816.1| hypothetical protein Calkro_1135 [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202670|gb|ADQ45997.1| protein of unknown function DUF815 [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 440

 Score = 39.5 bits (90), Expect = 0.79,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 65/223 (29%), Gaps = 19/223 (8%)

Query: 15  LHEMLMHAECVLSFKNFVMR-FFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNS 73
           L E L+       F  F     F W   GK L         +L+ +  +D      V N+
Sbjct: 173 LIEELVEFHRQNGFGIFAKYKGFSW--DGKKLIGIENLDPIRLDSLVNIDRQKKIVVENT 230

Query: 74  NPT-----IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128
                   +    +   RG GK++    ++           +  +   + QL    +  +
Sbjct: 231 LAFLNGQRVNNILLYGSRGTGKSSTVKALLNEFHHMG----LRIVEVYKDQLYT--FPRL 284

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
            + L  +P +    +  LS          L+  +    +        Y+       V   
Sbjct: 285 IRILRDVPLKFIIFVDDLSFEDIEENYTKLKAILEGSLEAMPQNVVIYATSNRRHLVKER 344

Query: 189 NTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
            +   ++ +DE        N ++    +  +     +   +  
Sbjct: 345 FSDRSSLSDDEVHF-----NDTLDEKLSLADRFGIVVTYPSPT 382


>gi|295400608|ref|ZP_06810586.1| Type III site-specific deoxyribonuclease [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294977511|gb|EFG53111.1| Type III site-specific deoxyribonuclease [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 722

 Score = 39.5 bits (90), Expect = 0.79,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 65/243 (26%), Gaps = 19/243 (7%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q+E +  +  +         P      ++ G   GKT L A  +L+         + 
Sbjct: 39  RPYQIEALRRLLFYFEHYRQKELPVHLLYEMATG--SGKTLLMAANILYFYEKGYRYFLF 96

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEM------QSLSLHPSGWYAELLEQSMGID 165
            + ++     N +    + +L+    ++ F        Q + +     + E  +  + I 
Sbjct: 97  FVNST-----NIIEKTKNNFLNPASTKYLFAPRIRIYQQDVRIREIQNFQEGNDDDINIL 151

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFN-DEASGTPDIINKSILGFFTELNPNRFW 224
                           +T           V   DEA     +    +     E      W
Sbjct: 152 FMTIQGLHSKLYAPSENTLTFEDFDDRKIVLLSDEAHHMNALTKNKLSK--EEQLEKHTW 209

Query: 225 IMTSN---TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR 281
             T N   TR       +            +   +          E    RY  D  + R
Sbjct: 210 EYTINEIFTRNKENVMLEYTATAELQHPAVREKYKNKAIYKYSLKEFREDRYSKDVKLLR 269

Query: 282 IEI 284
            ++
Sbjct: 270 SDV 272


>gi|284928939|ref|YP_003421461.1| cob(I)yrinic acid a,c-diamide adenosyltransferase [cyanobacterium
           UCYN-A]
 gi|284809398|gb|ADB95103.1| cob(I)yrinic acid a,c-diamide adenosyltransferase [cyanobacterium
           UCYN-A]
          Length = 205

 Score = 39.5 bits (90), Expect = 0.79,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 3/119 (2%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            ++Q +  +   +     V  S        I+ G G GKTT    M+L  +     ++II
Sbjct: 10  EQYQQKMEQRKKIQEQRLVEASKKKGL-IIINTGHGKGKTTAALGMVLRSLGHGFQVAII 68

Query: 112 -CIANSETQLKNTLWAEVSKWLSMLPHRHWFEM-QSLSLHPSGWYAELLEQSMGIDSKH 168
             +  +    + +++    K +        F               E  E+S+   +  
Sbjct: 69  QFVKGAWEPAEKSIFKSFGKQIEFYAMGEGFTWETQDRERDIFKAKEAWEKSLSYINNS 127


>gi|119181996|ref|XP_001242158.1| hypothetical protein CIMG_06054 [Coccidioides immitis RS]
 gi|121937034|sp|Q1DUF9|INO80_COCIM RecName: Full=Putative DNA helicase INO80
          Length = 1662

 Score = 39.5 bits (90), Expect = 0.79,   Method: Composition-based stats.
 Identities = 23/188 (12%), Positives = 46/188 (24%), Gaps = 17/188 (9%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G+GKT  +  +M +L           +    + L N    E+ K++  L    ++     
Sbjct: 824 GLGKTVQSISVMAYLAEVHDIWGPFLVVAPSSTLHN-WQQEIVKFVPDLKVLPYWGSAKD 882

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                 +      +++    +       T  +                +  DEA      
Sbjct: 883 RKVLRKF---WDRRNITYRKQSEFHVLVTSYQLVVGDAQYFQKIKWQYMILDEAQAIKSS 939

Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW---KRYQIDTRTVEGIDS 263
              S       ++     ++T            I N   E W                 S
Sbjct: 940 Q-SSRWKSLLGMHCRNRLLLTGTP---------IQNNMQELWALLHFIMPTLFDSHDEFS 989

Query: 264 GFHEGIIS 271
            +    I 
Sbjct: 990 EWFSKDIE 997


>gi|223997592|ref|XP_002288469.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975577|gb|EED93905.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 1287

 Score = 39.5 bits (90), Expect = 0.79,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 53/177 (29%), Gaps = 12/177 (6%)

Query: 60  EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
             +  H    +  +   I    +  G G GKT      ++      PG + I +  ++  
Sbjct: 352 RRLFQHQTQAIEAAMNDIH-TVVCTGTGSGKTMCFLLPVIAKALASPGSASILLFPTKAL 410

Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS-------MGIDSKHYTIT 172
            ++  ++++   L  LP+    ++  L            ++        + + +      
Sbjct: 411 AQDQ-YSKIKTLLQSLPNEPSTDIPPLHAGVIDGDTPHAQRDAIATDCQIILTNPDTIHA 469

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
               S +RP             V  DEA    D    + +            + +S+
Sbjct: 470 ALLPSWKRPSYKQLL--ARIDTVVIDEAH-VYDGTFGAHVAMVLSRLKRVCRVASSS 523


>gi|198274910|ref|ZP_03207442.1| hypothetical protein BACPLE_01069 [Bacteroides plebeius DSM 17135]
 gi|198272357|gb|EDY96626.1| hypothetical protein BACPLE_01069 [Bacteroides plebeius DSM 17135]
          Length = 739

 Score = 39.5 bits (90), Expect = 0.79,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 44/187 (23%), Gaps = 13/187 (6%)

Query: 55  QLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
           Q E   +     H     +   P  +   +    G GKT  +    +          II 
Sbjct: 218 QTELNQLRRKIQHLCGEKSIKEPGFYSLTV--PTGGGKTLSSLLWAVKHAVKYGKDRIII 275

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY--- 169
           +    + +  T       +       H        +      +  LE    + S+++   
Sbjct: 276 VIPYTSIIVQTAAILRKIFGDENVCEHHSSFDFEEVWKDKPDSSQLELQQRLASENWDYP 335

Query: 170 ------TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
                      +    +P      HN     V  DE    P    + I+           
Sbjct: 336 IIVTTNVQFFESLFGNKPSVCRKLHNIANSVVILDEIQTLPREYLQPIVNAMDSYQRLFG 395

Query: 224 WIMTSNT 230
                 T
Sbjct: 396 VSFLFTT 402


>gi|220917833|ref|YP_002493137.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219955687|gb|ACL66071.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 652

 Score = 39.5 bits (90), Expect = 0.79,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 38/149 (25%), Gaps = 18/149 (12%)

Query: 60  EAVDVHCHSNVNNSNPTIFK-------CAISAGRGIGKTTLNAWMMLWLI-STRPGMSII 111
            AV  H ++         F+         + +  G GKT   +  +L  I   R   S +
Sbjct: 33  RAVAEHGYTKPTPVQSATFRPIRDGKDVIVRSKTGTGKTAAFSIPILERIPDGRRKPSAL 92

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +  +            +            + + L +      A + +Q   + +    +
Sbjct: 93  VMCPTRELAIQVAEEVTA----------LAKHRDLGVVTIYGGASMGDQLDKLKAGAEIV 142

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
                                M    DEA
Sbjct: 143 VGTPGRIYDHIRRKTLRLEEVMVCCLDEA 171


>gi|197123043|ref|YP_002134994.1| DEAD/DEAH box helicase [Anaeromyxobacter sp. K]
 gi|196172892|gb|ACG73865.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp. K]
          Length = 651

 Score = 39.5 bits (90), Expect = 0.79,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 38/149 (25%), Gaps = 18/149 (12%)

Query: 60  EAVDVHCHSNVNNSNPTIFK-------CAISAGRGIGKTTLNAWMMLWLI-STRPGMSII 111
            AV  H ++         F+         + +  G GKT   +  +L  I   R   S +
Sbjct: 33  RAVAEHGYTKPTPVQSATFRPIRDGKDVIVRSKTGTGKTAAFSIPILERIPDGRRKPSAL 92

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +  +            +            + + L +      A + +Q   + +    +
Sbjct: 93  VMCPTRELAIQVAEEVTA----------LAKHRDLGVVTIYGGASMGDQLDKLKAGAEIV 142

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
                                M    DEA
Sbjct: 143 VGTPGRIYDHIRRKTLRLEEVMVCCLDEA 171


>gi|332795755|ref|YP_004457255.1| DEAD/DEAH box helicase domain-containing protein [Acidianus
           hospitalis W1]
 gi|332693490|gb|AEE92957.1| DEAD/DEAH box helicase domain protein [Acidianus hospitalis W1]
          Length = 740

 Score = 39.5 bits (90), Expect = 0.80,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 52/190 (27%), Gaps = 24/190 (12%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
           ++Q + +E +             +     I +G G GKT      +L L        I+ 
Sbjct: 58  KFQEKALEEI------------ESRKNVLIISGTGTGKTEAFLIPILDLALKGEKSVIVY 105

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
              ++   ++ L   + + +  LP                         + I +      
Sbjct: 106 --PTKALARDQLSR-ILRLIKNLPINVGIIDGDTPKIERDRLY-ASPPDILITNPDMIHV 161

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEAS---GTPDIINKSILGFFTELNPNRFWIMTSN 229
               S   P+      +        DE     G      + I+    E   +   I +S 
Sbjct: 162 GLPLS---PNFRRIIRSAEH--FVFDEIHVYEGVLGSHLRMIIDRLKEFTNDIHIIASSA 216

Query: 230 TRRLNGWFYD 239
           T   + + + 
Sbjct: 217 TIGASPYMFQ 226


>gi|327271453|ref|XP_003220502.1| PREDICTED: probable ATP-dependent RNA helicase DDX20-like [Anolis
           carolinensis]
          Length = 752

 Score = 39.5 bits (90), Expect = 0.80,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 47/171 (27%), Gaps = 17/171 (9%)

Query: 80  CAISAGRGIGKTTLNAWMMLW-LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
             + A  G GKT + + + L  LI   P   I+ +A +          E++  +  +   
Sbjct: 65  LIVQAKSGTGKTCVFSTVALDSLILESPVTQILVLAPT---------REIAVQIHAVITT 115

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
              +M+ L  H       L +    +  K +         ++       + +       D
Sbjct: 116 IGIKMEGLECHVFIGGTPLNQDKTRL-KKCHIAVGTPGRIKQLIELDFLNTSSIRLFILD 174

Query: 199 EASGTPD-----IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244
           EA    +          I       N     +  +    L          P
Sbjct: 175 EADKLLEEGSFQEQINWIYSSL-PANKQMLAVSATYPESLANTLTRYMRDP 224


>gi|295669542|ref|XP_002795319.1| DNA replication ATP-dependent helicase dna2 [Paracoccidioides
            brasiliensis Pb01]
 gi|226285253|gb|EEH40819.1| DNA replication ATP-dependent helicase dna2 [Paracoccidioides
            brasiliensis Pb01]
          Length = 1492

 Score = 39.5 bits (90), Expect = 0.80,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 35/118 (29%), Gaps = 3/118 (2%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKTT  A ++        G S++  + + T + N L       +  L      ++   
Sbjct: 977  GTGKTTTIAHII--RALVSQGKSVLLTSYTHTAVDNILLKIKDDNIRTLRLGATTKIHPD 1034

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                +   A   +    +   +        +    +     +N        DEAS   
Sbjct: 1035 VQKFADLAATPKKTIEELRDIYENSLVVATTCLGINHP-IFNNRIFNYCIVDEASQIT 1091


>gi|259907267|ref|YP_002647623.1| Non-specific serine/threonine protein kinase [Erwinia pyrifoliae
           Ep1/96]
 gi|224962889|emb|CAX54370.1| Non-specific serine/threonine protein kinase [Erwinia pyrifoliae
           Ep1/96]
 gi|283477080|emb|CAY72980.1| SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A member 5 [Erwinia pyrifoliae DSM
           12163]
          Length = 1081

 Score = 39.5 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 57/226 (25%), Gaps = 22/226 (9%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMS-IICIANSETQLKNTLWAEVSKW--------LSMLPH 137
           G+GKT     +++W I   P     + +A     L +    E+  +        L +   
Sbjct: 612 GLGKTLQILALLVWNIEQNPDGEPGLIVAPV--SLLDNWQRELDNFFYTTGIPVLKLYGD 669

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
                       P    A+ ++  +    +       T  E   D            +  
Sbjct: 670 TIGAMKYRQQDIPVHLKAQGIKSLLQPGWRGEAKIVLTTYETLRDQEFSLARQPWSIMVC 729

Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN--------GWFYDIFNIPLEDWK 249
           DEA    +     I      +        T                +        L ++ 
Sbjct: 730 DEAQKIKNPA-ALITQAANAVQARFKVACTGTPVENTLVDLWSLFDFVQPGLLGALNEFG 788

Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI--EILGQFPQQEV 293
           +  + T   E          + R      + R   E+ G  PQ+  
Sbjct: 789 KRYVRTIENEDGRHHRALEQLRRLIEPQTLRRTKEEVAGDLPQKIE 834


>gi|145349424|ref|XP_001419134.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579365|gb|ABO97427.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1767

 Score = 39.5 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 51/189 (26%), Gaps = 19/189 (10%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL-SMLPH 137
               + A  G GKT      M+ +    PG  ++ IA  +  ++      +  W  ++ P 
Sbjct: 931  NVLLGAPTGSGKTISAELSMMKVFRDSPGSKVVYIAPLKALVRER----IKDWRKNLCPT 986

Query: 138  RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
                 ++    +     A L    +    + +    R +      T           V  
Sbjct: 987  LGLRMVELTGDYTPDLRALLQADIIVSTPEKWDGISRNWQSRAYVT-------KVALVVI 1039

Query: 198  DEAS-------GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250
            DE            ++I   +         N   +  S          D   I  E    
Sbjct: 1040 DEIHLLASDRGPILEVIVSRMRYISARTGSNVRIVGLSTALANARDLGDWLGIDKEGLFN 1099

Query: 251  YQIDTRTVE 259
            ++   R V 
Sbjct: 1100 FRPSVRPVP 1108


>gi|156741590|ref|YP_001431719.1| helicase domain-containing protein [Roseiflexus castenholzii DSM
           13941]
 gi|156232918|gb|ABU57701.1| helicase domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 1129

 Score = 39.5 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 55/224 (24%), Gaps = 29/224 (12%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
           +    +  I+   G GKT +   ++  +        I+ +A     L++    E+ +   
Sbjct: 116 HQPRVRFLIADDPGAGKTIMAGLVIKEMKLRGLVRRILIVAP--GHLRDQWQRELKERF- 172

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
                 +  M   ++                    + +        + D        H  
Sbjct: 173 ---DERFVLMDRQTMRNRFGENAWES--------EFQVITSLDFARQEDVMQALAGAHWD 221

Query: 194 AVFNDEASGTP--------DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---- 241
               DEA            +   +  LG     N  +   +T+   R +   + +F    
Sbjct: 222 LTIVDEAHKMAAYKYGDKMEKTKRYRLGELLSRNSTQLLFLTATPHRGDPENFRLFLDLL 281

Query: 242 ---NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI 282
                   D     I             E +    G    + R 
Sbjct: 282 QPGAFATVDMLDESIRAGDNPLFIRRLKEDLKDFEGKPLFLPRQ 325


>gi|315608532|ref|ZP_07883517.1| type I restriction-modification system R subunit [Prevotella buccae
           ATCC 33574]
 gi|315249780|gb|EFU29784.1| type I restriction-modification system R subunit [Prevotella buccae
           ATCC 33574]
          Length = 763

 Score = 39.5 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 92/307 (29%), Gaps = 43/307 (14%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
           +  +P  +Q   +E          +       +  I    G GKT     ++  L ++  
Sbjct: 158 YTYEPRYYQRIAVERTVEAIAKGKD-------RVLIVMATGTGKTITAFQIIHRLKASGA 210

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
              I+ +A+    +  T+  +        P +        +   S +   +      + +
Sbjct: 211 KKKILYLADRNILIDQTMVQDFK------PFKKIMTKIQGAAIDSAYEVHMALYHQLVSN 264

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
           +          E   D F     T    +  DE        + +        N      M
Sbjct: 265 E----------EGVEDPFRQVQPTFFDLIIVDECHRGSAKDDSAWRKVLEYFNTATQIGM 314

Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286
           T+  +  NG                 +D            +GI      D  +A   +  
Sbjct: 315 TATPKAENG--------------ANNLDYFGEPVFTYSLLQGI-----QDGFLAPYRVTN 355

Query: 287 QFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346
            +   ++  F P+   ++ + R+ +  LY    +G DIA     + +V  R   +++ I 
Sbjct: 356 SYISIDLQGFKPNEDEKDLLGRDIVQRLYERKDIGRDIAFTKR-REIVAKRITKMLKQIG 414

Query: 347 DWSAKLI 353
             +  ++
Sbjct: 415 RMTKTIV 421


>gi|23099217|ref|NP_692683.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Oceanobacillus iheyensis HTE831]
 gi|22777446|dbj|BAC13718.1| ATP-dependent DNA helicase [Oceanobacillus iheyensis HTE831]
          Length = 939

 Score = 39.5 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 46/180 (25%), Gaps = 25/180 (13%)

Query: 23  ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82
               SF N++   +  G K        +    Q E  E +     S+ +          I
Sbjct: 231 NVDTSFGNYLDTIYEDGGKLSEHLSMYEKRAGQQEMSETIYDAFTSSNHA--------LI 282

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
            AG G GK+ L   +     + +    +I   ++       L  E+    ++        
Sbjct: 283 EAGTGTGKS-LAYLLPAVYYAVKQNQKVIISTHTTQLQSQLLEEEIPLIHAISDIPFQAA 341

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
           +                                  E+  D +        + ++  E + 
Sbjct: 342 LLKG----------------KNHYISLEKFSIELYEQGQDNYDIALTKAMLLIWITETNT 385


>gi|160891733|ref|ZP_02072736.1| hypothetical protein BACUNI_04188 [Bacteroides uniformis ATCC 8492]
 gi|156859140|gb|EDO52571.1| hypothetical protein BACUNI_04188 [Bacteroides uniformis ATCC 8492]
          Length = 375

 Score = 39.5 bits (90), Expect = 0.82,   Method: Composition-based stats.
 Identities = 32/259 (12%), Positives = 70/259 (27%), Gaps = 34/259 (13%)

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN----SETQLKN 122
              +     +     + + R  GK++L    M  L      + +  I      +E +   
Sbjct: 23  RKQLKELLGSGINVMLISPRRWGKSSLVKVAMDELTQEDKHIRVCFIDAFSIKTEAEFYR 82

Query: 123 TLWAEVSKWLSMLPHRHWFEMQSL------SLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
               EV    +    +   +++        S+       + L   + ++ +  ++     
Sbjct: 83  IFAREVISCAASTLEKRLEDVKQFLKAVSPSITLKSDPTDTLSFDLKLELEEKSVMEILE 142

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDII-NKSILGFFTELNPNRFWIMT-------- 227
             E+     G H    + V  DE      +   KS+ G        +  +          
Sbjct: 143 LPEKIAAAKGIH----LIVCIDEFQQLALLPGYKSMEGKMRSAWQKQQQVSYCFYGSKRH 198

Query: 228 ---------SNTRRLNGWFYDIFNIPLEDWKRYQID--TRTVEGIDSGFHEGIISRYGLD 276
                    SN     G    +  I  E+W  + ++   RT + I     E +       
Sbjct: 199 MMMDIFNNSSNPFYRFGQVLFLQKIKKEEWVPFIVNAFHRTNKEISEQQAEQLCDIVKCH 258

Query: 277 SDVARIEILGQFPQQEVNN 295
           S   +      +       
Sbjct: 259 SWYLQQLCYFIWSGTSEKV 277


>gi|254284934|ref|ZP_04959900.1| phage terminase large subunit (GpA) [Vibrio cholerae AM-19226]
 gi|150424937|gb|EDN16714.1| phage terminase large subunit (GpA) [Vibrio cholerae AM-19226]
          Length = 632

 Score = 39.5 bits (90), Expect = 0.82,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 63/237 (26%), Gaps = 29/237 (12%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
           +PT  K     G  +GK+     ++ W +   P   II +  +E+ + N +  ++ +   
Sbjct: 10  DPTYSKITFVMGTQMGKSATMQNVIGWRLDDLPAP-IIYVGPTESNINNVVEPKIMEMFR 68

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
                                +  ++           I   +       +     +   +
Sbjct: 69  ECQ------------------SLWIKYDDKSPKHKKRIGGVSLRFAWAGSATELASDSAV 110

Query: 194 AVFNDE-----ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW 248
               DE     A+ T +     I     +   +    +TS         +      +  W
Sbjct: 111 ITLVDELDRPDANATGEGSLSEIAEARGDAYIDSKLGLTSTPTHGKASTFVHPETGVTHW 170

Query: 249 KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEE 304
                   +       + +G    + +          G+ F  +    + P    ++
Sbjct: 171 AVAPKGKVSSPIW-LEWEQGTRHEWAVPCPDPD---CGEYFIPRSELLWWPGKGTDK 223


>gi|19115394|ref|NP_594482.1| DEAD/DEAH box helicase [Schizosaccharomyces pombe 972h-]
 gi|74698339|sp|Q9P7T8|YIW2_SCHPO RecName: Full=Uncharacterized helicase C694.02
 gi|6901197|emb|CAB71840.1| DEAD/DEAH box helicase [Schizosaccharomyces pombe]
          Length = 1717

 Score = 39.5 bits (90), Expect = 0.82,   Method: Composition-based stats.
 Identities = 20/168 (11%), Positives = 47/168 (27%), Gaps = 25/168 (14%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P  WQ E ++ +D                  + A    GKT ++ + M  ++       +
Sbjct: 736 PDEWQRETLDILDRDES------------VFVVAPTSSGKTFISFYAMEKVLRDNDDGVV 783

Query: 111 ICIANSE---TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
           I +A ++    QL   ++A  +K         W          +    ++L         
Sbjct: 784 IYVAPTKALVNQLSAEVYARFNKHYPHAGQTVWSVYTRDYRINNPTNCQVLITV------ 837

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
            + +          + +          +  DE      + +  +    
Sbjct: 838 PHVLQSMLLQPALANAW----CPKIRRIIFDEIHCIGQMEDGLVEEQL 881


>gi|150389449|ref|YP_001319498.1| CRISPR-associated helicase Cas3 [Alkaliphilus metalliredigens QYMF]
 gi|149949311|gb|ABR47839.1| CRISPR-associated helicase Cas3 [Alkaliphilus metalliredigens QYMF]
          Length = 798

 Score = 39.5 bits (90), Expect = 0.82,   Method: Composition-based stats.
 Identities = 25/197 (12%), Positives = 44/197 (22%), Gaps = 7/197 (3%)

Query: 38  WGIKGKPLEHF--SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95
           W      LE    S P   +++ +         N   +   I++ A+    G GKT  + 
Sbjct: 227 WNELADVLEVKLKSYPKSGKIDLLREEVSIACKNFGENKTGIYQLAV--PTGGGKTLSSL 284

Query: 96  WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
              L          +  I    T +                         +      +  
Sbjct: 285 RYALQHAKKFNKERVFYIIPFTTIIDQNAKDIKDILGREDIILEHHSNLVVDNDQEEYKL 344

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII---NKSIL 212
                   I          T            HN     +  DE    P        S +
Sbjct: 345 LTERWDSPIVLTTMVQFLDTLFSGGTQGVRRMHNLTNSIIIFDEIQAIPIKCINMFNSAI 404

Query: 213 GFFTELNPNRFWIMTSN 229
            F + +      + T+ 
Sbjct: 405 NFLSNICNATIILCTAT 421


>gi|253699452|ref|YP_003020641.1| hypothetical protein GM21_0812 [Geobacter sp. M21]
 gi|251774302|gb|ACT16883.1| conserved hypothetical protein [Geobacter sp. M21]
          Length = 486

 Score = 39.5 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 43/166 (25%), Gaps = 22/166 (13%)

Query: 37  PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
           PW   G     F     W+      V            P      +S  R IGKTTL   
Sbjct: 19  PWWSGG----RFQDLPTWRRAAFREVHDWLK-----DPPAGRALLLSGARQIGKTTLLLQ 69

Query: 97  MMLWLISTR-PGMSIICIANSETQLKNT-------LWAEVSKWLSMLPHRHWFEMQSLSL 148
            +  L+    P  +I+        LK         LW E       + +    E+Q+   
Sbjct: 70  AIDVLLDQGVPPTNILYATFDHPLLKLIGLDGLLRLWREFEPAREGVEYIFLDEIQATKD 129

Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
                    L+  +  + +       + +    +            
Sbjct: 130 W-----QVWLKHQVDFEKRRRIAVTGSATPLETEGLESGVGRWHTI 170


>gi|254580319|ref|XP_002496145.1| ZYRO0C11528p [Zygosaccharomyces rouxii]
 gi|238939036|emb|CAR27212.1| ZYRO0C11528p [Zygosaccharomyces rouxii]
          Length = 1510

 Score = 39.5 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 39/130 (30%), Gaps = 5/130 (3%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKTT+ A ++  L S   G  ++  + + + + N L       ++++      ++   
Sbjct: 1046 GSGKTTVIAQIIKILASR--GQKVLLTSYTHSAVDNILLKLKGSPINIIRLGSARKIHPE 1103

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                   Y +       +     T    T      D F             DEAS     
Sbjct: 1104 IHEYQPSYQDAESYEDIMKQISDTQVVATTCLGLNDIFFTLQQKDFDYAILDEASQIS-- 1161

Query: 207  INKSILGFFT 216
                 LG   
Sbjct: 1162 -MPVALGPLR 1170


>gi|157128662|ref|XP_001661489.1| U520 [Aedes aegypti]
 gi|108872530|gb|EAT36755.1| U520 [Aedes aegypti]
          Length = 2075

 Score = 39.5 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 21/221 (9%), Positives = 49/221 (22%), Gaps = 28/221 (12%)

Query: 46   EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
            + F Q +  Q +   AV                   + A  G GKTT+  + +L ++   
Sbjct: 1255 DKFPQFNPIQTQVFNAVYNSED-----------NVFVGAPTGSGKTTIAEFAVLRMLQQN 1303

Query: 106  PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
            P   ++ + + ++  +         W         F                 +  +   
Sbjct: 1304 PHGRVVYLVSRDSLAELI----FMDWHQK------FGQHLGCKVVKLTGETGTDLKLIAK 1353

Query: 166  SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN------ 219
             +    T   +           +  +      DE           +    + +       
Sbjct: 1354 GQIIVTTADKWDILSRRWKQRKNVQNIQLFIVDELQLIGGEEGPVLEVVCSRMRYISSQI 1413

Query: 220  -PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
                  I  S +                    +    R + 
Sbjct: 1414 EKQIRIIALSASLSDARDVAQWLGCNANATFNFHPSVRPIP 1454


>gi|86607265|ref|YP_476028.1| DEAD-box ATP dependent DNA helicase [Synechococcus sp. JA-3-3Ab]
 gi|86555807|gb|ABD00765.1| ATP-dependent helicase, DEAD/DEAH box family [Synechococcus sp.
           JA-3-3Ab]
          Length = 803

 Score = 39.5 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 33/294 (11%), Positives = 81/294 (27%), Gaps = 38/294 (12%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q+  ++A+                   + A  G GKT L     ++   ++ G  + 
Sbjct: 24  DEFQIRAIQALAAGES------------VVVCAPTGSGKT-LIGEYAIYRALSQ-GKRVF 69

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWF-EMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
                   L N  + +  +            ++      P       + ++M   +    
Sbjct: 70  YTTP-LKALSNQKFRDFGQQFGPERVGLLTGDISINREAPILVMTTEIFRNMLYGTPLSL 128

Query: 171 ITCRTYSEERPDTFVGPHNTHGM------AVFNDEASGTPDI-----INKSILGFFTELN 219
              +       D +               AV  DE     D        ++I+     + 
Sbjct: 129 AVQQGAYASEMDAWEQAEALSRDPLQDVQAVILDECHYMNDQQRGTVWEEAIIYCPAHIQ 188

Query: 220 PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279
                   +N+ +L  W   +          ++         +      ++ +      V
Sbjct: 189 LVALSATLANSDQLTDWMNQVHGPTRLIDSSHRPVPLQFHFANRKGLFPLLEQTESGQWV 248

Query: 280 ARIEILGQFPQQEVNNF--IP--HNYIEEAMSREAIDDLYAPLIM----GCDIA 325
               +  + P+   +++  +P     +E    R+ +    A   +    GCD+A
Sbjct: 249 CNRRLKSKLPKSGQSSYGGVPDMVQVVENLRQRDMLP---AIYFIFSRKGCDLA 299


>gi|238879242|gb|EEQ42880.1| DNA repair protein RAD16 [Candida albicans WO-1]
          Length = 852

 Score = 39.5 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 53/209 (25%), Gaps = 12/209 (5%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G+GKT     + +   S  P + I                E+ K       +      S 
Sbjct: 269 GMGKTIQTIGLFMHDRSKGPNLVIGPTVALMQ-----WKNEIEKHTEPGMLKVLLYHGSN 323

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF----VGPHNTHGMAVFNDEASG 202
             +     ++                 + Y  +R +         HN     V  DEA  
Sbjct: 324 RSNSIQELSQYDVILTSYSVLESVYRKQNYGFKRKNGLVKEKSAIHNIEFYRVILDEAHN 383

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNT--RRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
             D  + +           R W +T      R+   +  I  + L+ +  Y       + 
Sbjct: 384 IKDRNSNTSRAAGKLNTKKR-WCLTGTPLQNRIGEMYSLIRYMKLDPFHSYFCTKCDCKS 442

Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQFP 289
            D  F +G          +        F 
Sbjct: 443 EDWKFSDGRRCDLCQHPPMLHTNFFNHFM 471


>gi|224012567|ref|XP_002294936.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
 gi|220969375|gb|EED87716.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
          Length = 224

 Score = 39.5 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 51/182 (28%), Gaps = 12/182 (6%)

Query: 54  WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113
           W     E      +    +    +    +S   G+GKT + A +M       P   ++  
Sbjct: 1   WIYPVDEKYPERSYQLQMSQTAIMANTLVSLPTGLGKTLIAAVVMYNYYRWFPTGKVVFC 60

Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173
           A +   +      ++     ++        +      SG       ++M    + +  T 
Sbjct: 61  APTRPLVTQ----QIQACYKIMGIPELHTAE-----ISGRSKPESRENMWNSKRVFFCTP 111

Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL-GFFTELNPNRFWIMTSNTRR 232
            T  ++             + V  DEA         ++L     E       +  S T  
Sbjct: 112 HTLVKDIEGGRCD--AKSIVCVVMDEAHRATGNHANALLVNMIEEAGAKFRLVGLSATPG 169

Query: 233 LN 234
            +
Sbjct: 170 TD 171


>gi|167524609|ref|XP_001746640.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774910|gb|EDQ88536.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1507

 Score = 39.5 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 43/176 (24%), Gaps = 23/176 (13%)

Query: 45   LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            L  F+  +  Q +    V    H              + A  G GKT + A + L+ +  
Sbjct: 1267 LYRFTHFNPVQTQVFHTVYHTDH-----------NVLLGAPTGSGKT-VVAELALYRLFR 1314

Query: 105  -RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
              PG   + IA  +  ++  +     +    L  R   E+       +            
Sbjct: 1315 EHPGKKAVYIAPLKALVRERMDDWQIRLQQKLGRRV-VELTGDVTPDARAIERADVIVTT 1373

Query: 164  IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
             +            +                V  DE           I    +  N
Sbjct: 1374 PEKWDGISRSWQNRDYV---------RKVTLVIIDEIHLLGGDRGPVIEVIVSRTN 1420


>gi|153005573|ref|YP_001379898.1| PhoH family protein [Anaeromyxobacter sp. Fw109-5]
 gi|152029146|gb|ABS26914.1| PhoH family protein [Anaeromyxobacter sp. Fw109-5]
          Length = 356

 Score = 39.5 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 36/129 (27%), Gaps = 14/129 (10%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKT L   M +  +  R    I+    +             +    L        + +
Sbjct: 143 GTGKTYLAMAMAVSFLVERKVKRIVLTRPA------------VEAGEKLGFLPGDIAEKV 190

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
           + +    +  L    M    K      R   E  P  F+     +   +  DEA  T + 
Sbjct: 191 NPYLRPLHDALF--DMVDYEKATAFMERGTVEVAPLAFMRGRTLNDAFIILDEAQNTTEE 248

Query: 207 INKSILGFF 215
             K  L   
Sbjct: 249 QMKMFLTRL 257


>gi|89242736|gb|AAS49486.2| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 39.5 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPTIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA    D 
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|13811296|gb|AAK40099.1|AF339908_1 RNA helicase SDE3 [Arabidopsis thaliana]
          Length = 1002

 Score = 39.5 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 20/163 (12%), Positives = 48/163 (29%), Gaps = 14/163 (8%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKT      ++ L +T+    ++  A S +   + L   +      +     F + + 
Sbjct: 424 GTGKTMTLVEAIVQLYTTQRNARVLVCAPSNSAADHILEKLLCLEGVRIKDNEIFRLNAA 483

Query: 147 SLHPSGWYAELLE-----------QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
           +        E++              +   +++  +     S    +        H   +
Sbjct: 484 TRSYEEIKPEIIRFCFFDELIFKCPPLKALTRYKLVVSTYMSASLLNAEGVKRG-HFTHI 542

Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
             DEA    +  N   +            ++  + R+L    Y
Sbjct: 543 LLDEAGQASEPENMIAVSNLCL--TETVVVLAGDPRQLGPVIY 583


>gi|68468819|ref|XP_721468.1| hypothetical protein CaO19.2969 [Candida albicans SC5314]
 gi|68469363|ref|XP_721196.1| hypothetical protein CaO19.10486 [Candida albicans SC5314]
 gi|46443104|gb|EAL02388.1| hypothetical protein CaO19.10486 [Candida albicans SC5314]
 gi|46443387|gb|EAL02669.1| hypothetical protein CaO19.2969 [Candida albicans SC5314]
          Length = 852

 Score = 39.5 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 53/209 (25%), Gaps = 12/209 (5%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G+GKT     + +   S  P + I                E+ K       +      S 
Sbjct: 269 GMGKTIQTIGLFMHDRSKGPNLVIGPTVALMQ-----WKNEIEKHTEPGMLKVLLYHGSN 323

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF----VGPHNTHGMAVFNDEASG 202
             +     ++                 + Y  +R +         HN     V  DEA  
Sbjct: 324 RSNSIQELSQYDVILTSYSVLESVYRKQNYGFKRKNGLVKEKSAIHNIEFYRVILDEAHN 383

Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNT--RRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
             D  + +           R W +T      R+   +  I  + L+ +  Y       + 
Sbjct: 384 IKDRNSNTSRAAGKLNTKKR-WCLTGTPLQNRIGEMYSLIRYMKLDPFHSYFCTKCDCKS 442

Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQFP 289
            D  F +G          +        F 
Sbjct: 443 EDWKFSDGRRCDLCQHPPMLHTNFFNHFM 471


>gi|213405465|ref|XP_002173504.1| helicase C-terminal domain-containing protein [Schizosaccharomyces
           japonicus yFS275]
 gi|212001551|gb|EEB07211.1| helicase C-terminal domain-containing protein [Schizosaccharomyces
           japonicus yFS275]
          Length = 794

 Score = 39.5 bits (90), Expect = 0.84,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 42/123 (34%), Gaps = 11/123 (8%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              ++   G+GKT + A +M+  +   P   ++ +A ++  +   +  E    ++ +P  
Sbjct: 90  NVLVALPTGLGKTFIAAVLMMNYLRWFPQSYVVFLAPTKPLVTQQM--EACYKIAGIPKS 147

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
              E+                  +  + K + +T +T   +               +  D
Sbjct: 148 CTAELSGQ-------VPVATRAELYKEKKVFFLTPQTLQNDLKRGICD--RMKISCLVVD 198

Query: 199 EAS 201
           EA 
Sbjct: 199 EAH 201


>gi|66809511|ref|XP_638478.1| hypothetical protein DDB_G0284689 [Dictyostelium discoideum AX4]
 gi|60467073|gb|EAL65114.1| hypothetical protein DDB_G0284689 [Dictyostelium discoideum AX4]
          Length = 1679

 Score = 39.5 bits (90), Expect = 0.84,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 33/150 (22%), Gaps = 6/150 (4%)

Query: 82   ISAGRGIGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAE--VSKWLSML 135
            +    G GKT   A ++L  + +         I   + +   + N L     + K  S+ 
Sbjct: 1174 VRGPPGTGKTHFLALVVLIFMESFKRKEKPFRIAITSFTHNAIDNLLLRISALKKEYSIS 1233

Query: 136  PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
              +                          D K  T            +           +
Sbjct: 1234 VGQDINFPLFKKQSSKLTDEFKDNDIKLFDKKDLTNRNHLCVGATSWSLSTLDYNDFDLL 1293

Query: 196  FNDEASGTPDIINKSILGFFTELNPNRFWI 225
              DEAS     I         +        
Sbjct: 1294 IIDEASQLSSFIGSIPFQRLNKETGKIIIC 1323


>gi|68499973|gb|AAY97916.1| putative ATPase [Plasmid pMCBF1]
 gi|133711725|gb|ABO36545.1| putative ATPase [uncultured bacterium pMCBF6]
          Length = 319

 Score = 39.5 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 14/130 (10%), Positives = 32/130 (24%), Gaps = 7/130 (5%)

Query: 62  VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121
           +      ++  +        +  G G GKTTL   ++  ++   P   +  I ++     
Sbjct: 133 MTDAQRLSIIRAVEEHRNILVIGGTGSGKTTLVNAIINQMVIQDPTERVFIIEDTGE--- 189

Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
               AE               +   +L               +  +        ++   P
Sbjct: 190 IQCAAENHVQYHTSIDVSMTMLLKTTLRMRP----DRILVGEVRGEEALDLLDAWNTGHP 245

Query: 182 DTFVGPHNTH 191
                 H   
Sbjct: 246 GGAATLHANS 255


>gi|320582339|gb|EFW96556.1| Nicotinic acid mononucleotide adenylyltransferase [Pichia angusta
           DL-1]
          Length = 778

 Score = 39.5 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 45/158 (28%), Gaps = 9/158 (5%)

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS-IICIANSE 117
           ME V ++              C +   RG GKTT+    +L L    P M  +I I+   
Sbjct: 39  MEQVQIYKMLENTIKFNEGKSCLVIGPRGSGKTTMVNNALLDLQEKFPNMFYVIRISGFY 98

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
                +   E+++ L     RH           S         S+        +      
Sbjct: 99  QSDDKSAIKEIARQLDWHLLRHSGNWSVSFERFSANETMNSVMSV--------LDGSQLM 150

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
           E +            +    DE     +   +++L   
Sbjct: 151 EGKDQNGDNDEMQMPIIFVIDELDRYTNDAKQTLLYNL 188


>gi|311245447|ref|XP_003121832.1| PREDICTED: Fanconi anemia group M protein-like [Sus scrofa]
          Length = 2053

 Score = 39.5 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 25/250 (10%), Positives = 68/250 (27%), Gaps = 19/250 (7%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
               +    G+GKT + A +M       P   ++ +A ++  +      ++     ++  
Sbjct: 114 CNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQ----QIEACYRVMGI 169

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
                 +           E+ +    +      +         P             +  
Sbjct: 170 PQSHMAEMTGSTQVFTRKEIWDSKRVLFLTPQVMVNDLSRGACP-------AAEIKCLVI 222

Query: 198 DEAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256
           DEA     +     ++    +   +   +  S T   +        I     ++ ++ + 
Sbjct: 223 DEAHRALGNYAYCQVVRELVKYTNHFRILALSATP-GSDIKAVQQVITNLLIEQIELRSE 281

Query: 257 TVEGI---DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
               I           +     +   A  +   Q  +   ++ I  N +   M R+  + 
Sbjct: 282 DAPDILPYSHERRVEKLVVPLSEELAAIQKAYIQILEAFAHSLIQRNVL---MRRDIPNL 338

Query: 314 LYAPLIMGCD 323
               +I+  D
Sbjct: 339 TKYQIILARD 348


>gi|306843198|ref|ZP_07475811.1| type I site-specific deoxyribonuclease, HsdR family [Brucella sp.
           BO2]
 gi|306286608|gb|EFM58181.1| type I site-specific deoxyribonuclease, HsdR family [Brucella sp.
           BO2]
          Length = 968

 Score = 39.5 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 22/193 (11%), Positives = 49/193 (25%), Gaps = 24/193 (12%)

Query: 33  MRFFPWGIKG-KPLEHFSQP---HRWQ-LEFMEAVDVHCHSNVNNSNPTIFK--CAISAG 85
             ++ W  +G  P  +          Q   F+E +      +              +SA 
Sbjct: 142 KHYYQWKEEGENPYGYMLDFHISRLCQKRRFLEIIHDFIVFDSGTKKTCRHNQYFGVSAA 201

Query: 86  R---------------GIGKTTLNAWMMLWLISTRPGMSIICI--ANSETQLKNTLWAEV 128
                           G GK+    W+  W+        ++ I       +    +++ V
Sbjct: 202 HDHVRDRKSGIIWHTQGSGKSLTMVWLAKWIRENAKDSRVLVITDRTELDEQIEGVFSGV 261

Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
            + +    +                 + + +     + +    T     E +     G  
Sbjct: 262 DEKIYRTKNGEDLIATLNKSTEWLVCSLIHKFGRQGEDEDNQATEDFIKELKASLPAGFA 321

Query: 189 NTHGMAVFNDEAS 201
               + VF DE  
Sbjct: 322 AKGEIFVFVDECH 334


>gi|256086191|ref|XP_002579287.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238664711|emb|CAZ35526.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 217

 Score = 39.5 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 15/136 (11%), Positives = 32/136 (23%), Gaps = 11/136 (8%)

Query: 66  CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML-WLISTRPGMSIICIANSETQLKNTL 124
                   +         A  G GKT   +  +L  + +  P    + +A +    K   
Sbjct: 44  IQQRAIIPSIEGRNVIAQAQSGTGKTATFSIAILQQICTNDPRCQALVLAPTRELAKQI- 102

Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184
                     +      +  ++S H      ++      +      +           + 
Sbjct: 103 ---------QMVVLALGDYMNISCHVCIGGTQVSTDIEQLQLGQQIVVGTPGRVLDMISR 153

Query: 185 VGPHNTHGMAVFNDEA 200
              H         DEA
Sbjct: 154 GYLHTQTIKCFVLDEA 169


>gi|84494465|ref|ZP_00993584.1| putative cell division-related protein [Janibacter sp. HTCC2649]
 gi|84383958|gb|EAP99838.1| putative cell division-related protein [Janibacter sp. HTCC2649]
          Length = 1472

 Score = 39.5 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 22/208 (10%), Positives = 51/208 (24%), Gaps = 13/208 (6%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           ++   G GK+ L   ++  L    P   I  +                            
Sbjct: 654 VAGTTGSGKSELLQSLICSLAINNPPSRITFLLVDYKG---------GAAFRECADLPHS 704

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP-DTFVGPHNTHGMAVFNDEA 200
                 L P+     L+     + ++ + +      +    +          M +  DE 
Sbjct: 705 VGYITDLTPALVQRALVSLHAELTTREHLLERYGAKDLVALERSHPDVAPPAMLICIDEF 764

Query: 201 SGTPDIINKSILGFFT--ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
           +     + + + G  +  +   +    M   T+R  G          +     +I +   
Sbjct: 765 AALTTEVPEFVDGMVSIAQRGRSLGMHMILATQRPAGVVTPQIKANTDLRIALRIASDDD 824

Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILG 286
              D                 A ++  G
Sbjct: 825 SH-DVIDAPDAARLSRRTPGRAWVKRTG 851


>gi|294881707|ref|XP_002769457.1| N-acetyltransferase, putative [Perkinsus marinus ATCC 50983]
 gi|239872916|gb|EER02175.1| N-acetyltransferase, putative [Perkinsus marinus ATCC 50983]
          Length = 924

 Score = 39.5 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 61/224 (27%), Gaps = 23/224 (10%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            +++A RG GK+     M + L  T+   ++   A S   L  TL+  V K    L +  
Sbjct: 283 VSLTAARGRGKSASL-GMAIALAITQGYSNVFVTAPSPENL-TTLFEFVLKTFESLGYAE 340

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN---------- 189
             +   +    SG      +    ++S             R + +               
Sbjct: 341 HQDYSLVQQQQSGSEDYGSDSKARLESGGGGHRGVNTPLVRINVYKTHRQTIQYVSPADS 400

Query: 190 ---THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246
              +    +  DEA+  P      +    +          T       G       +  E
Sbjct: 401 KYISQAELLVIDEAAAIP---LPVVKKLLSTGQHITLMSSTVQGYEGTGR-ALSLKLIAE 456

Query: 247 DWKRYQIDTRTVEGIDS----GFHEGIISRYGLDSDVARIEILG 286
             K+ +  +R             +  I    G   +     +L 
Sbjct: 457 LKKQQKGSSRDDPNGKHLTELTLNTPIRYASGDGLEAWLGRLLC 500


>gi|56808102|ref|ZP_00365893.1| COG1203: Predicted helicases [Streptococcus pyogenes M49 591]
          Length = 673

 Score = 39.5 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 51/194 (26%), Gaps = 11/194 (5%)

Query: 29  KNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME-AVDVHCHSNVNNSNPTIFKCAISAGRG 87
           ++F+   +   I+ K    F QP+  QL  +   +           +  I++  +    G
Sbjct: 105 RSFLKHSYLAAIEQK-YASFGQPNN-QLNTIRTEIAERVKERGKRDSKGIYRLDL--PTG 160

Query: 88  IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
            GKT L+       +          I    + L+   +        +    H   +   +
Sbjct: 161 AGKTNLSMRYAFHQLVHHDKSRFFYITPFLSVLEQNAYEIRKVTGDLGVLEHHSNVVKQA 220

Query: 148 LHPSGWYAELLEQSMGIDSKHYTI------TCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
                    LL   +        +        +T  + +        +     V  DE  
Sbjct: 221 NEDDDDKDSLLSAYLSDSWDSQVVLTSMVQFFQTLFKTKSANLRRFSSLINSVVILDEVQ 280

Query: 202 GTPDIINKSILGFF 215
             P  +        
Sbjct: 281 SLPIEVTTLFNLTM 294


>gi|319760404|ref|YP_004124342.1| exodeoxyribonuclease V, alpha subunit [Candidatus Blochmannia vafer
           str. BVAF]
 gi|318039118|gb|ADV33668.1| exodeoxyribonuclease V, alpha subunit [Candidatus Blochmannia vafer
           str. BVAF]
          Length = 645

 Score = 39.5 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 28/66 (42%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  IS G G GKT+  A ++  L+     + I  IA +        ++  +K  +     
Sbjct: 191 RVLISGGPGTGKTSTIAKIITALLLYDHNLRIKMIAPTGKSASILTYSCNNKLNNFNQLN 250

Query: 139 HWFEMQ 144
            +F+ +
Sbjct: 251 GFFKYK 256


>gi|237651615|ref|YP_002899085.1| N4 gp68-like protein [Roseophage DSS3P2]
 gi|220898085|gb|ACL81343.1| N4 gp68-like protein [Silicibacter phage DSS3phi2]
          Length = 538

 Score = 39.5 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 33/297 (11%), Positives = 71/297 (23%), Gaps = 36/297 (12%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           K      RG  KTTL    +   ++    +           + +++   V          
Sbjct: 70  KITNLCARGTAKTTLMMEYLTLYLAMFNKIPGFGPVPGMLYISDSMDNGVKSA-RESIKS 128

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC-RTYSEERPDTFVGPHNTHGMAVFN 197
            ++  + L            E  M   +++      + +  +         N   +    
Sbjct: 129 RYYSSEFLQYWLPESGVRFTENYMEFYNRNGGKFGVKMFGAKSGIRGTKIFNRRPVLAVM 188

Query: 198 D----EASGTPDIINKSILGFFTEL------NPNRFWIMTSNTRRLNGWFYDIFNIPL-- 245
           D    +A        ++I                   I+           Y         
Sbjct: 189 DDLISDADSKSPTAMEAINDTVYSGVQYALDPTRHKMILNGTPFNKEDIVYQAIESGAWQ 248

Query: 246 -EDWKRYQ--------IDTRTVEGIDSGFHEGIISR--YGLDSDVARIEILGQFPQQEVN 294
              W   +              +     + + +             R E++ +    + +
Sbjct: 249 VNVWPVCKEFPCTEEEFSGAWEDRFTYQYVKEMYESAVMEGKEKSFRQELMLR-ITSDES 307

Query: 295 NFIPHNYI--EEAMSREAIDDLYAPLIMGCDIA---GEGGDKTVVVF----RRGNII 342
             I  + I  +  M   +    Y   I   D A    +  D TV+      + GN I
Sbjct: 308 RLIQQDEIGWKSRMDILSNRKNYNFYITT-DFATSSKQTADYTVISVWAYDKDGNWI 363


>gi|321476533|gb|EFX87493.1| hypothetical protein DAPPUDRAFT_306483 [Daphnia pulex]
          Length = 805

 Score = 39.5 bits (90), Expect = 0.87,   Method: Composition-based stats.
 Identities = 38/328 (11%), Positives = 84/328 (25%), Gaps = 55/328 (16%)

Query: 43  KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR--------GIGKTTLN 94
           KP+  F+    +  + M  +     +N           A+ +GR        G GKT   
Sbjct: 297 KPVCSFAHF-NFDEKLMNVIRKSEFTNPTPIQSQAIPAAL-SGRDVIGIAQTGSGKTAAF 354

Query: 95  AWMMLWLISTRPGMS------IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
            W M+  I  +P +        + +A +  +L   ++ E  K+  +            S 
Sbjct: 355 LWPMIVHILDQPDLKPGDGPIGLILAPT-RELSQQIYTEAKKFCKVFGISVVCCYGGGSK 413

Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208
                     EQS  ++     +                +      +  DEA    D+  
Sbjct: 414 W---------EQSKDLEQGAEIVVATPGRMIDLVKIKATNLQRVTFLVLDEADRMFDMGF 464

Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG 268
           +  +             +  +            ++  +  +  Q D       D      
Sbjct: 465 EPQVRSICNHARPERQTLLFSATFKKRIEKLARDVLSDPIRIVQGDVGEA-NQDVTQVIE 523

Query: 269 IISRYGLDSDVARIEILGQFPQQEVNNFI--------------------------PHNYI 302
           +I+     S +    +  +F                                     + +
Sbjct: 524 VIAPTAKYSWLITRLV--EFMASGSVLIFVTKKANAEELSASLKSRELSVALLHGDMDQV 581

Query: 303 EEAMSREAIDDLYAPLIMGCDIAGEGGD 330
           +      +       +++  D+A  G D
Sbjct: 582 DRNQVISSFKKKEMDILVATDVAARGLD 609


>gi|290998710|ref|XP_002681923.1| SNF2 domain-containing protein [Naegleria gruberi]
 gi|284095549|gb|EFC49179.1| SNF2 domain-containing protein [Naegleria gruberi]
          Length = 1231

 Score = 39.5 bits (90), Expect = 0.87,   Method: Composition-based stats.
 Identities = 23/209 (11%), Positives = 49/209 (23%), Gaps = 14/209 (6%)

Query: 87  GIGKTTLNAWMMLWLISTRP---GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           G+GKT      M +L   +       II  +++          E  K+   L    ++  
Sbjct: 533 GLGKTIQTIAFMAYLAEKKSIWGPTLIITPSSTLHN----WQQEFEKFCPTLRVLPYWGA 588

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
                    ++    +               +      +            +  DEA   
Sbjct: 589 LKERKLLRKYWTNPDKLYQKDSP---FHVVVSSYGLILEDEKYFKKVKWQYLILDEAHAI 645

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNT---RRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
                         +      ++T           W    F +P       + +    + 
Sbjct: 646 K-SSKSLRWKTLLSMKCRNRMLLTGTPIQNNMKELWALLHFIMPSIFDSHDEFNDWFSKD 704

Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQFP 289
           I+S   +   ++           IL  F 
Sbjct: 705 IESHATKEQDTKLNEQQLARLHMILKPFM 733


>gi|215414875|emb|CAA21686.2| C. elegans protein Y54E2A.4, partially confirmed by transcript
            evidence [Caenorhabditis elegans]
          Length = 2017

 Score = 39.5 bits (90), Expect = 0.87,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 39/136 (28%), Gaps = 10/136 (7%)

Query: 82   ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
            I A  G GKT      M  L+   PGM ++ IA  ++ ++      V  W         +
Sbjct: 1200 IGAPTGSGKTLCAELAMFRLLQDHPGMKVVYIAPLKSLVRER----VDDWKKKFEDGMGY 1255

Query: 142  EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
             +  +S   +    EL   S+         T   +           +      +  DE  
Sbjct: 1256 RVVEVSGDVTPDPEELAASSI------LITTPEKWDGISRSWATREYVRRVGLIVLDEVH 1309

Query: 202  GTPDIINKSILGFFTE 217
                     +    + 
Sbjct: 1310 LLGVDRGAVLEAIVSR 1325


>gi|209559724|ref|YP_002286196.1| ATP-dependent RNA helicase SrmB, putative [Streptococcus pyogenes
           NZ131]
 gi|209540925|gb|ACI61501.1| ATP-dependent RNA helicase SrmB, putative [Streptococcus pyogenes
           NZ131]
          Length = 800

 Score = 39.5 bits (90), Expect = 0.87,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 51/194 (26%), Gaps = 11/194 (5%)

Query: 29  KNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME-AVDVHCHSNVNNSNPTIFKCAISAGRG 87
           ++F+   +   I+ K    F QP+  QL  +   +           +  I++  +    G
Sbjct: 232 RSFLKHSYLAAIEQK-YASFGQPNN-QLNTIRTEIAERVKERGKRDSKGIYRLDL--PTG 287

Query: 88  IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
            GKT L+       +          I    + L+   +        +    H   +   +
Sbjct: 288 AGKTNLSMRYAFHQLVHHDKSRFFYITPFLSVLEQNAYEIRKVTGDLGVLEHHSNVVKQA 347

Query: 148 LHPSGWYAELLEQSMGIDSKHYTI------TCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
                    LL   +        +        +T  + +        +     V  DE  
Sbjct: 348 NEDDDDKDSLLSAYLSDSWDSQVVLTSMVQFFQTLFKTKSANLRRFSSLINSVVILDEVQ 407

Query: 202 GTPDIINKSILGFF 215
             P  +        
Sbjct: 408 SLPIEVTTLFNLTM 421


>gi|17537519|ref|NP_497062.1| hypothetical protein Y54E2A.6 [Caenorhabditis elegans]
          Length = 1798

 Score = 39.5 bits (90), Expect = 0.87,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 39/136 (28%), Gaps = 10/136 (7%)

Query: 82   ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
            I A  G GKT      M  L+   PGM ++ IA  ++ ++      V  W         +
Sbjct: 981  IGAPTGSGKTLCAELAMFRLLQDHPGMKVVYIAPLKSLVRER----VDDWKKKFEDGMGY 1036

Query: 142  EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
             +  +S   +    EL   S+         T   +           +      +  DE  
Sbjct: 1037 RVVEVSGDVTPDPEELAASSI------LITTPEKWDGISRSWATREYVRRVGLIVLDEVH 1090

Query: 202  GTPDIINKSILGFFTE 217
                     +    + 
Sbjct: 1091 LLGVDRGAVLEAIVSR 1106


>gi|327400267|ref|YP_004341106.1| hypothetical protein Arcve_0358 [Archaeoglobus veneficus SNP6]
 gi|327315775|gb|AEA46391.1| protein of unknown function DUF699 ATPase [Archaeoglobus veneficus
           SNP6]
          Length = 807

 Score = 39.5 bits (90), Expect = 0.88,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 67/238 (28%), Gaps = 43/238 (18%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM------LWLISTRPGM 108
           Q+  ++  +                  I+A RG GKT +   +       +  +  RP +
Sbjct: 255 QVRVLQLFETFFDREKERKA-----VVITADRGRGKTAVLGIVTPYLISRMHRVLKRP-V 308

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            I+ +A +  Q   T +  + K L     +++                  +         
Sbjct: 309 RIMVVAPT-PQAVQTYFRFLKKALVRQGMKNY------------------KVKESNGLIT 349

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP-DIINKSILGFFTELNPNRFWIMT 227
              +     E            +   +  DEA+G    ++ +   G          +I+ 
Sbjct: 350 VINSKFARVEYVVPRRAMIEKDYADIIIVDEAAGIDVPVLWQITEGAR--------YIVF 401

Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
           S T          F+I    + +       VE       E I    G   +    ++L
Sbjct: 402 STTIHGYEGAGRGFSI---RFLKRLEMDEDVEIEKIHLEEPIRYGKGDPIEAWLYDVL 456


>gi|297526845|ref|YP_003668869.1| ABC transporter related protein [Staphylothermus hellenicus DSM
           12710]
 gi|297255761|gb|ADI31970.1| ABC transporter related protein [Staphylothermus hellenicus DSM
           12710]
          Length = 219

 Score = 39.5 bits (90), Expect = 0.88,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 51/185 (27%), Gaps = 15/185 (8%)

Query: 63  DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL-----ISTRPGMSIICIA-NS 116
             H   N+  S        +    G+GKTTL     L L          G  I  +  + 
Sbjct: 14  SEHILRNIYLSIEEKENVVVRGRSGVGKTTLAMISALLLKPSSGEIMFVGRKITKLRDHE 73

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM--------GIDSKH 168
            + L+      + ++  +LP+    +   L L   GW  +  E             + + 
Sbjct: 74  RSMLRLKHIGYIDQYYKLLPNLTVLDNIILPLRLMGWKKQEAENEALNLIKQLGIYNVRD 133

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSILGFFTELNPNRFWIMT 227
                 +  +++              +  DE  S   +     I+        N    + 
Sbjct: 134 KYPLQISGGQKQRAAIARALVKKPKLIIADEPFSNLDEETMHQIMMLLKNYVENNHAGIL 193

Query: 228 SNTRR 232
             T  
Sbjct: 194 ITTTD 198


>gi|153002036|ref|YP_001367717.1| ATP-dependent RNA helicase SrmB [Shewanella baltica OS185]
 gi|217974608|ref|YP_002359359.1| ATP-dependent RNA helicase SrmB [Shewanella baltica OS223]
 gi|304410566|ref|ZP_07392184.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307304659|ref|ZP_07584409.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|151366654|gb|ABS09654.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
 gi|217499743|gb|ACK47936.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
 gi|304351050|gb|EFM15450.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306912061|gb|EFN42485.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 419

 Score = 39.5 bits (90), Expect = 0.88,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 47/233 (20%), Gaps = 22/233 (9%)

Query: 57  EFMEAVDVH----CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM---- 108
           E + A+  H                      A  G GKT       L  +   P      
Sbjct: 14  ESLNAMGHHSPTTIQQETIPYALEQRDILARAPTGTGKTASFLLPSLQHLIDFPRRFAGQ 73

Query: 109 -SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
             I+ +  +          E++  +      H    Q L +           Q   +   
Sbjct: 74  ARILILTPT---------RELASQIHRYAC-HLATGQGLDIAIVTGGVPYGPQEEALAGN 123

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
              +                +      +  DEA    D+   S++         R   M 
Sbjct: 124 VDILVATPGRLMEYLDKGNFNAQEVDILIIDEADRMLDMGFSSVVQAIAIEAQGRKQNML 183

Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280
            +     G         L D     +        +       I          
Sbjct: 184 FSATLEGGGVQRFAREVLNDPIEIDV---EAPRSEKAKIHQWIHLADDKEHKF 233


>gi|123454959|ref|XP_001315228.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
 gi|121897898|gb|EAY03005.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
          Length = 955

 Score = 39.5 bits (90), Expect = 0.88,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 52/157 (33%), Gaps = 12/157 (7%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              +    G+GKT ++A ++L      P   I+ +A S   +   + A +   L +    
Sbjct: 28  NTLVVIPTGLGKTFISAMVILNFYRWFPKGKILFLATSRPLVTQQM-AGIRDILQI---- 82

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                +S  +  +G     +   +   ++    T +T  ++          +  + V  D
Sbjct: 83  ----DKSEIIELTGSVEPRIRPQLWNKARVIFATPQTVQKDLEKG--TCPASQIVLVVID 136

Query: 199 EASGTP-DIINKSILGFFTELNPNRFWIMTSNTRRLN 234
           EA     D     ++    E       I  S T   +
Sbjct: 137 EAHHATGDHSYCKVVSGIAEYTKFFRVIGLSATPGSD 173


>gi|323512317|gb|ADX87773.1| hypothetical protein TU12-16_00095 [Vibrio phage ICP2_2006_A]
          Length = 508

 Score = 39.5 bits (90), Expect = 0.88,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 53/220 (24%), Gaps = 23/220 (10%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSET----QLKNTLWAEVSKWLSMLPHRHW 140
            RG  K+ + A    W ++  P  +I+ I+ +      QL +      SK          
Sbjct: 51  PRGHLKSHMMALWAAWWVTKHPETTILYISATSELAEMQLYDIKNIMTSKIYRRYWPDMI 110

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
            E +        W    +                  +        G H      V   + 
Sbjct: 111 HEEEGKREK---WTNSAIAVDHPKRKMEGVRDFTIKTAGLTTNTTGWHAD----VIISDD 163

Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW-----FYDIFNIPLEDWKRYQIDT 255
              PD          TE    +     S    +               P + +  ++   
Sbjct: 164 VVVPDNAY-------TEDGRRKVAAAMSQMESILNADGIVKACGTRYHPADIYDTWKNQH 216

Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN 295
           + V              + +   V   + +  +P+    +
Sbjct: 217 QPVFDEHGEETGEERPVWDIFERVVEEDGVFLWPRTSRGS 256


>gi|331218680|ref|XP_003322017.1| helicase SWR1 [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309301007|gb|EFP77598.1| helicase SWR1 [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 1764

 Score = 39.5 bits (90), Expect = 0.88,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 60/236 (25%), Gaps = 26/236 (11%)

Query: 53   RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GMS 109
             +QL+ +  +       +N               G+GKT  +  +M +L           
Sbjct: 846  EYQLKGLNWLANLYEQGINGILADEM--------GLGKTVQSISLMAYLAEVHNIWGPFL 897

Query: 110  IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
            +I  A++          E+++++  L    ++           +      + +  D    
Sbjct: 898  VIAPASTLHN----WQQEITRFVPALKPIPYWGSVKDRTILRKF---WNRKHLRYDRDAP 950

Query: 170  TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                 T  +                +  DEA         +        +     ++T  
Sbjct: 951  FHVVITSYQLVVQDEKYFQTLKWQYMILDEAQAIKSSS-STRWKTLLGFHCRNRLLLTGT 1009

Query: 230  TRRLNG---WFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI 282
              + +    W    F +P      +       E         +    G++    R 
Sbjct: 1010 PIQNSMTELWALLHFIMPQ----LFDSHEEFSEWFSKDIENSVDKAGGMNEHQLRR 1061


>gi|285804114|gb|ADC35596.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 39.5 bits (90), Expect = 0.88,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 52/185 (28%), Gaps = 30/185 (16%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATK- 1722

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                    +E   + +    +H T T R  S             +   +  DEA    D 
Sbjct: 1723 --------SEHTGREIVDLMRHATFTMRLLS--------PVRVPNYNLIIMDEAHF-TDP 1765

Query: 207  INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
             + +  G+ +            MT+        F        ++ +     +        
Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822

Query: 264  GFHEG 268
             +   
Sbjct: 1823 EWITD 1827


>gi|284037966|ref|YP_003387896.1| type I site-specific deoxyribonuclease [Spirosoma linguale DSM 74]
 gi|283817259|gb|ADB39097.1| Type I site-specific deoxyribonuclease [Spirosoma linguale DSM 74]
          Length = 813

 Score = 39.5 bits (90), Expect = 0.88,   Method: Composition-based stats.
 Identities = 34/332 (10%), Positives = 80/332 (24%), Gaps = 36/332 (10%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
               QP  +Q   +           N       +  +    G GKT     M+  L  + 
Sbjct: 160 GSGRQPRYYQQIAINRTVEAIAKGQN-------RVLLVMATGTGKTYTAFQMIYRLWKSG 212

Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSML-PHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
               I+ +A+    +  T   +   +   +   R                   +  +   
Sbjct: 213 RKKRILFLADRNALIDQTRRGDFKYFRDKMTIIRKRVVNVGGKEELVSTRRRGISATDKA 272

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA---SGTPDIINKSILGFFTELNPN 221
                 +       E  D +          +  DE    S + D   + IL    +    
Sbjct: 273 YEIFLGLYQGLTGNEGIDAYKDFSPDFFDLIVVDECHRGSASDDSSWRVIL----DYFKG 328

Query: 222 RFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI---ISRYGLDSD 278
              +  + T R      +        +            +       I   +   G    
Sbjct: 329 ATQVGLTATPRETNTVSNSEYFGDPLYTYSLKQGIDDGFLAPYRVVRIGLNVDLEGWRPP 388

Query: 279 VARIEILGQFPQQEVNNFIPHNYIEEAMSREA-------IDDLY--------APLIMGCD 323
             + +  G       +     +  +  +  E            Y          ++   D
Sbjct: 389 KGKRDKKGNPV---EDRIYNRSDFDRNIVVEDRRRLVAEKITEYLKGQNRFMKTIVFCVD 445

Query: 324 IAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355
           I    G +  +V +  ++++  + +  K+  +
Sbjct: 446 IEHADGMRNALVKQNADLVKQNYKYVMKITGD 477


>gi|212715327|ref|ZP_03323455.1| hypothetical protein BIFCAT_00221 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661784|gb|EEB22359.1| hypothetical protein BIFCAT_00221 [Bifidobacterium catenulatum DSM
           16992]
          Length = 481

 Score = 39.5 bits (90), Expect = 0.88,   Method: Composition-based stats.
 Identities = 36/314 (11%), Positives = 68/314 (21%), Gaps = 53/314 (16%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ    +               T     +S  R  GK+TL   +        P   I  
Sbjct: 34  PWQRLVADVAGEIDPDTGTYFYDT---VILSTPRQCGKSTLVDAVDTRNSQWGPDRFIYY 90

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           +A +     +       K+L  L       + +     +G   +       I  K  T  
Sbjct: 91  LAQTGKDAGD----HFKKYLKTLGSSPLAAITTRPYLGAGDLRQPFANGSVIMPKSVTKV 146

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL----GFFTEL------NPNR 222
                          H   G  +  DEA    +    +IL                 P  
Sbjct: 147 AG-------------HGVQGDKITLDEAFSLSEETGNTILDGFMPTMATRLKATGVQPQL 193

Query: 223 FWIMTSNT------RRLNGWFYDIFNIPLEDWKRYQIDTRTVEG---------------I 261
           +   T  T       R               W  + +                       
Sbjct: 194 WITSTEGTAESTFFNRRLDACRAGEQSRRTCWFDFGLPADEDPENLDSIMRHHPAAGLLW 253

Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD--LYAPLI 319
           +         ++  +          +  +   +  I        ++           P++
Sbjct: 254 NKTQLADFREQFQGNPAGWARAFGNRRDEGITDRAIDEALWAATVTAPVTPGDLDGRPVV 313

Query: 320 MGCDIAGEGGDKTV 333
            G  +  +G   +V
Sbjct: 314 FGVAVDVDGTHTSV 327


>gi|255084417|ref|XP_002508783.1| predicted protein [Micromonas sp. RCC299]
 gi|226524060|gb|ACO70041.1| predicted protein [Micromonas sp. RCC299]
          Length = 943

 Score = 39.5 bits (90), Expect = 0.89,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 45/135 (33%), Gaps = 10/135 (7%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            A++A RG GK+     + +         +I   + S   LK   +  + K    + ++ 
Sbjct: 276 VALTAARGRGKSA-AMGIAVAGAVAMGYANIFVTSPSPENLKT-FFQFILKGFDAMEYKE 333

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +   +      +   ++  ++    +           ER  +           +  DE
Sbjct: 334 HLDYDIVESSNPAFGKAIVRINVHRAHRQTIQYILPQHAERASSAE--------LLVIDE 385

Query: 200 ASGTPDIINKSILGF 214
           A+  P    +++LG 
Sbjct: 386 AAAIPLPTVQALLGP 400


>gi|239616472|ref|YP_002939794.1| Type III site-specific deoxyribonuclease [Kosmotoga olearia TBF
           19.5.1]
 gi|239505303|gb|ACR78790.1| Type III site-specific deoxyribonuclease [Kosmotoga olearia TBF
           19.5.1]
          Length = 875

 Score = 39.5 bits (90), Expect = 0.89,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 56/194 (28%), Gaps = 22/194 (11%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q+E +     +   N N   PT     ++ G   GKT L A  +L  +  +   + +
Sbjct: 39  RPYQIEAIARFIHYLEENPNRKRPTQLLFNMATG--SGKTLLMAANIL-YLYNKGYRNFL 95

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
              NS     N +      +L++L  ++ F  +           E+       +     I
Sbjct: 96  FFVNST----NIIEKTRDNFLNLLSPKYLFNQRIKFEDKEVVIREVSNFDEANEEDINII 151

Query: 172 TCRTYSEERPDTFVGPHN-------THGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
                           ++          + + +DEA               TE      W
Sbjct: 152 FTTIQGLHSQLNLFRENSITFEDLKDKKIVLISDEAHHI--NAWTRNRLSKTEEMKKTSW 209

Query: 225 ------IMTSNTRR 232
                 I+ SN   
Sbjct: 210 EYTVMQILNSNPEN 223


>gi|169795370|ref|YP_001713163.1| putative Phage replication protein [Acinetobacter baumannii AYE]
 gi|169148297|emb|CAM86162.1| conserved hypothetical protein; putative Phage replication protein
           [Acinetobacter baumannii AYE]
          Length = 247

 Score = 39.5 bits (90), Expect = 0.89,   Method: Composition-based stats.
 Identities = 17/136 (12%), Positives = 32/136 (23%), Gaps = 3/136 (2%)

Query: 29  KNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGI 88
           K+F     P   K     +++ P   Q   +          V      +    +    G 
Sbjct: 61  KHFAGAMLPERHKNAGFRNYNTPLSGQKNALTQTANFAKKIVK---GEVENLVMVGSTGT 117

Query: 89  GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
           GKT L       L++       I       ++      +            +     L L
Sbjct: 118 GKTHLACATARTLLAKGNYARYITSEELAQRIMKAWDKDTKDQSEQSVIHEFTTYDLLIL 177

Query: 149 HPSGWYAELLEQSMGI 164
              G +       +  
Sbjct: 178 DEYGLHDRDKRLELIH 193


>gi|304413632|ref|ZP_07395076.1| DNA-dependent ATPase I and helicase II [Candidatus Regiella
           insecticola LSR1]
 gi|304283723|gb|EFL92117.1| DNA-dependent ATPase I and helicase II [Candidatus Regiella
           insecticola LSR1]
          Length = 715

 Score = 39.5 bits (90), Expect = 0.90,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 81/288 (28%), Gaps = 28/288 (9%)

Query: 59  MEAVDVHCHSNVNNSNPTIFK-CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
           M  +    +     +  T +K   + AG G GK+ +    + WL+S         IA + 
Sbjct: 1   MSNLLDGLNEKQREAVATRYKHLLVLAGAGSGKSRVLVHRIAWLLSQEDISPFSIIAVTF 60

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
           T   N   AE+   +  L   H           +            +   H+        
Sbjct: 61  T---NKSAAEMRHRIENLGRAHNGMWVGTFHGLA----------HRLLRIHHLAANLPQD 107

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
            +  D+         +    D      +                   +       +  + 
Sbjct: 108 FQVLDSDDQLRFVKRIIKSLD----LDEKKWSPRQAISYINGKKDMMLR---PENIENYG 160

Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297
             + NI L  ++ Y         +D            L++         +F    V+ F 
Sbjct: 161 NPVENIWLRIYQAYHDACHRTGSVDFAELLLRAHELWLNNPCILQHYRQRFSHILVDEFQ 220

Query: 298 PHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHI 345
             N I+ A       D    +I+G D      D++ +   RG  +E+I
Sbjct: 221 DTNKIQYAWIHLLAGDQATVMIVGDD------DQS-IYGWRGAQVENI 261


>gi|311234325|gb|ADP87179.1| terminase GpA [Desulfovibrio vulgaris RCH1]
          Length = 659

 Score = 39.5 bits (90), Expect = 0.90,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 42/144 (29%), Gaps = 7/144 (4%)

Query: 35  FFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN 94
              W  +   +    +P RW+ E        C      S P I    I      GKT L 
Sbjct: 55  VTEWCERHFRIIGGQRPGRWRREVFPY---TCTIMDAYSLPFIRVIGICGPPQTGKTALE 111

Query: 95  AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWY 154
              + W I   PG  ++ + + +   +        + + +L      E     L      
Sbjct: 112 LGCLAWAIDRDPGP-VLMVLDQQDTAREMA---KDRVIPLLKASPPLEQYITGLADDETA 167

Query: 155 AELLEQSMGIDSKHYTITCRTYSE 178
             +  + M I         R  ++
Sbjct: 168 KSINLRHMTIHFGWAGSVSRLANK 191


>gi|241203596|ref|YP_002974692.1| hypothetical protein Rleg_0854 [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857486|gb|ACS55153.1| hypothetical protein Rleg_0854 [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 229

 Score = 39.5 bits (90), Expect = 0.90,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 36/141 (25%), Gaps = 16/141 (11%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
            +   R +G TT     ML        +    IA++   ++     ++      LP    
Sbjct: 55  VLLKARQLGLTTFIQIFMLDACVFNRDIRAGTIAHTLGDVQAIFRDKIKYPYDNLPDG-- 112

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
                  +  +       +  + + +        +       T    H +    +     
Sbjct: 113 -------IRNAVPVVRANQTELLLGNNSSIRVGTSLR---SGTLQYLHISEYGKL----C 158

Query: 201 SGTPDIINKSILGFFTELNPN 221
           +  PD   +   G   +    
Sbjct: 159 AKYPDKAREVRTGALNKAGEE 179


>gi|167538304|ref|XP_001750817.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163770734|gb|EDQ84416.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1041

 Score = 39.5 bits (90), Expect = 0.90,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 54/240 (22%), Gaps = 29/240 (12%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
            F+ P   Q            + +  +         +A  G GKT      +L  I  R 
Sbjct: 310 GFTAPTPIQ-----------QAAIVPAVRDYRDVIAAAPTGSGKTLAFGLPVLQHILNRR 358

Query: 107 -------GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159
                  G+  + +  +          ++ + L  L       + ++    +    E L 
Sbjct: 359 ARGRSTAGLQCLILTPTRELALQQSLWQIQQHLKPLATPLSVRVTAIVGGMALVKQERL- 417

Query: 160 QSMGIDSKHYTIT-CRTYSEERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTE 217
             +    +    T  R +   +       H      +  DEA           +      
Sbjct: 418 --LKAKPEIVVGTPGRLWEIIQSGHVHFAHLDSLRFLVLDEADRMVERGHFAELDKILA- 474

Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277
             P             + +   +      D      + + V                  S
Sbjct: 475 RLPRPTQPAF--PTEEDAYLQRVRENARRDG---TPNVQEVPSNVEEPSATQSDGRKRSS 529


>gi|328882738|emb|CCA55977.1| DNA or RNA helicases of superfamily II [Streptomyces venezuelae
           ATCC 10712]
          Length = 597

 Score = 39.5 bits (90), Expect = 0.91,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 47/200 (23%), Gaps = 41/200 (20%)

Query: 37  PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
           PWG  GK          WQ   ME    +      +        A++   G GKTT    
Sbjct: 20  PWGTAGKL-------RAWQQGAMEK---YIQEQPRDF------LAVATP-GAGKTTFALT 62

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
           +  WL+       I  +A +E                    + W    +           
Sbjct: 63  LASWLLHHHVVQQITVVAPTEH-----------------LKKQWAAAAARIGIKLDPDYS 105

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA--SGTPDIINKSILGF 214
               S   D    T                        V  DE   +G      ++ L  
Sbjct: 106 AGPLSKEYDGVAITYAGVGVRPMLHRNRSEQR---KTLVILDEIHHAGDSKSWGEACLEA 162

Query: 215 FTELNPNRFWIMTSNTRRLN 234
           F          +T    R +
Sbjct: 163 FEPATRRL--ALTGTPFRSD 180


>gi|317178970|dbj|BAJ56758.1| Type IIG restriction-modification enzyme [Helicobacter pylori F30]
          Length = 1611

 Score = 39.5 bits (90), Expect = 0.91,   Method: Composition-based stats.
 Identities = 34/282 (12%), Positives = 74/282 (26%), Gaps = 33/282 (11%)

Query: 29  KNFVMRFFPWGIKG-------KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81
           ++F+     W            PL    +P   Q+E ++A   +  +  N          
Sbjct: 144 EDFIYSQIDWEKFDPTQTQGEIPLCDKKKPRPHQIEAIKATKEYFSNPKNTRGK-----L 198

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           I A  G GKT  +    L ++        + +A S   L    + E           +  
Sbjct: 199 IMAC-GTGKTYTS----LKIMEALEPKITLFLAPSIALLSQ-TFRE--YAQEKSDPFYAS 250

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
            + S      G   +  + +  I+     +   T  E+           +   +      
Sbjct: 251 IVCSDDKVGKGKKNKNDDDTDDINFSELPLKPSTRPEDILSVCELVQKENKRFIIFSTYQ 310

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI 261
                    I             ++     R  G  Y       +D   + +       I
Sbjct: 311 S-----ALRIKEAQEVGLGEIDLVICDEAHRTVGAMYSSNE--RDDKNAFTLCHSD-GNI 362

Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
            +     + +   + S+ ++        ++  N     +  E
Sbjct: 363 KAKKRLYMTATPKVYSESSKAR-----AKESDNAIYSMDDAE 399


>gi|307298971|ref|ZP_07578773.1| chromosomal replication initiator protein DnaA [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306915396|gb|EFN45781.1| chromosomal replication initiator protein DnaA [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 447

 Score = 39.5 bits (90), Expect = 0.91,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 40/139 (28%), Gaps = 10/139 (7%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
           + +  V +    N    NP      +  G G+GKT L   +    +S  P   ++ I  S
Sbjct: 120 KALYEVALDVTQNPGKYNPFF----VYGGVGLGKTHLLQAIAQETMSNFPDKKVLYI-TS 174

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHW-----FEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
           E  + + + +     +      +        +  +         +        +      
Sbjct: 175 EQFMNDMIQSIKENNIQKFRDHYRKKSDILLIDDIQFLIGKKGVQNEFFHSFNELHDSGK 234

Query: 172 TCRTYSEERPDTFVGPHNT 190
                S+  P+     H+ 
Sbjct: 235 QLIICSDRNPEELETFHSR 253


>gi|156399977|ref|XP_001638777.1| predicted protein [Nematostella vectensis]
 gi|156225900|gb|EDO46714.1| predicted protein [Nematostella vectensis]
          Length = 2187

 Score = 39.5 bits (90), Expect = 0.91,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 43/175 (24%), Gaps = 21/175 (12%)

Query: 45   LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            L  F+  +  Q +    V    H              + A  G GKT +    +  L   
Sbjct: 1326 LYKFTHFNPVQTQVFHTVYNSDH-----------NVLLGAPTGSGKTIIAELAIFRLFDK 1374

Query: 105  RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
             PG   + IA  +  ++  +     ++   L  R   E+       S   ++        
Sbjct: 1375 YPGAKAVYIAPLKALVRERMDDWKVRFGRKLGKRV-IELTGDVTPDSRSISQADLIVTTP 1433

Query: 165  DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
            +                             +  DE     D     +    +  N
Sbjct: 1434 EKWDGISRSWQTRSYV---------KQVNLLIIDEIHLLGDERGPVLEVIVSRTN 1479


>gi|331271055|ref|YP_004385766.1| hypothetical protein CbC4_4191 [Clostridium botulinum BKT015925]
 gi|329127447|gb|AEB77391.1| hypothetical protein CbC4_4191 [Clostridium botulinum BKT015925]
          Length = 329

 Score = 39.5 bits (90), Expect = 0.91,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 28/98 (28%), Gaps = 12/98 (12%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISA---------GRGIGKTTLNAWMMLWLIS 103
           +W  +    +       +             +          RG GKT L    +     
Sbjct: 55  KWFPDLWYDMLKPEKGGMRLDLDQRVFLRCMSRFISTYGVFPRGFGKTMLELMSIYHTCV 114

Query: 104 TRPGMSIICIANSETQLKNTL---WAEVSKWLSMLPHR 138
             P ++I   A S+    +       E+ KW  +L + 
Sbjct: 115 FFPDITIAMSAQSKENASSISEEKHKEILKWFPLLKNE 152


>gi|317405963|gb|EFV86241.1| type III restriction enzyme [Achromobacter xylosoxidans C54]
          Length = 976

 Score = 39.5 bits (90), Expect = 0.91,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 57/186 (30%), Gaps = 16/186 (8%)

Query: 49  SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108
           S     QL  + +V  H                +S   G GKT +    + +L+ +    
Sbjct: 22  SGFRPGQLGALHSVAAHFSVYDEP-------AIVSLPTGYGKTAVI-MALPFLLGSN--- 70

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            ++ +  ++   + T        LS L        ++ + H        L     +  + 
Sbjct: 71  RVLVVEPTDVLRRQTSAH--FGELSTLRKLKVLPAEAGNPHVHPQKGRPLSADEWLAFRT 128

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
           + +   T +   P             +  DEA   P     + LG     +  +F  +T+
Sbjct: 129 FDVVVSTPASTSPVLEPVSPADLFDLIIFDEAHHAPADTWSAYLG---HYSRAKFVFLTA 185

Query: 229 NTRRLN 234
              R +
Sbjct: 186 TPFRRD 191


>gi|260550544|ref|ZP_05824754.1| exonuclease V alpha subunit [Acinetobacter sp. RUH2624]
 gi|260406459|gb|EEW99941.1| exonuclease V alpha subunit [Acinetobacter sp. RUH2624]
          Length = 583

 Score = 39.5 bits (90), Expect = 0.91,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 37/149 (24%), Gaps = 16/149 (10%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
            E ++ +                   I+ G G GKT   A ++  L    P + +   A 
Sbjct: 118 EEHLDLLTDPHQQAALQMVTRQSLSIITGGPGTGKTYTLARIIAVLSQAIPHIRVAMAAP 177

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
           +    +                     +Q+    P    + L+   +   S         
Sbjct: 178 TGKAAQRM----------------QEALQNSFNDPKLLESGLISDELRNQSTQTIHRLLG 221

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTP 204
               +   F          +  DEAS   
Sbjct: 222 MGHSQTPRFNQKQPLPYDVIVVDEASMLD 250


>gi|195546688|ref|YP_002117769.1| putative DNA maturase B [Pseudomonas phage PT5]
 gi|158187649|gb|ABW23126.1| putative DNA maturase B [Pseudomonas phage PT5]
          Length = 601

 Score = 39.5 bits (90), Expect = 0.91,   Method: Composition-based stats.
 Identities = 31/260 (11%), Positives = 70/260 (26%), Gaps = 28/260 (10%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +      + N       K  ++A RG  K+T+    ++W I+  P    + ++ S  + 
Sbjct: 41  DIADFMQDSPN-------KAMVAAQRGEAKSTIACIYVVWCITQNPATRAMLVSGSGDKA 93

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLS-LHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
           +             L  +       L+ L P     +    +    +       ++ S  
Sbjct: 94  EEN---------GQLITKLIMHWDLLAYLRPEARMGDRTSATSFDVNWALKGVEKSASIN 144

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT-------SNTRR 232
                          +  D+   T + +  +     T  +     I T          + 
Sbjct: 145 CIGITAALQGYRADILIPDDIETTKNGLTATERAKLTRQSQEFTSICTHGKILYLGTPQS 204

Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292
               +     +P   +       R    +D     G      + + +AR+E  G  P+  
Sbjct: 205 RESIYN---GLPARGFLMRIWPGRF-PTLDEQERYGDWLAPSILARIARLEERGHNPRTG 260

Query: 293 VNNFIPHNYIEEAMSREAID 312
                   +  +       D
Sbjct: 261 KGLDGTRGWAADPQRYNEED 280


>gi|195480025|ref|XP_002101109.1| GE17433 [Drosophila yakuba]
 gi|194188633|gb|EDX02217.1| GE17433 [Drosophila yakuba]
          Length = 1008

 Score = 39.5 bits (90), Expect = 0.91,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 58/207 (28%), Gaps = 22/207 (10%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            +++A RG GK+     + +        +++   +     L   L+  V K    L ++ 
Sbjct: 275 MSLTAARGRGKSAAL-GLSIAAAVAFGYVNVYVTSPHPENLIT-LFEFVLKGFDALEYQE 332

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +   +    + +   ++  ++   S+              +            +  DE
Sbjct: 333 HADYTIIRSTNADYKKAIIRINITRSSRQTIQYIAPSDTHLLNAAD--------LLLIDE 384

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
           A+  P       L    ++       M S         Y+     L      Q+      
Sbjct: 385 AAAIP-------LPLVKKMIGPYLVFMASTING-----YEGTGRSLSLKLISQLQKDNNA 432

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILG 286
                  E I  +   D +   I +L 
Sbjct: 433 RPPLKLEESIRYQENDDIEKWLINLLC 459


>gi|195355164|ref|XP_002044063.1| GM21106 [Drosophila sechellia]
 gi|194129316|gb|EDW51359.1| GM21106 [Drosophila sechellia]
          Length = 861

 Score = 39.5 bits (90), Expect = 0.91,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 58/207 (28%), Gaps = 22/207 (10%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            +++A RG GK+     + +        +++   +     L   L+  V K    L ++ 
Sbjct: 275 MSLTAARGRGKSAAL-GLSIAAAVAFGYVNVYVTSPHPENLIT-LFEFVLKGFDALEYQE 332

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +   +    + +   ++  ++   S+              +            +  DE
Sbjct: 333 HADYTIIRSTNADYKKAIIRINITRSSRQTIQYIAPSDTHLLNAAD--------LLLIDE 384

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
           A+  P       L    ++       M S         Y+     L      Q+      
Sbjct: 385 AAAIP-------LPLVKKMIGPYLVFMASTING-----YEGTGRSLSLKLISQLQKDNNA 432

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILG 286
                  E I  +   D +   I +L 
Sbjct: 433 RPPLKLEESIRYQENDDIEKWLINLLC 459


>gi|194890908|ref|XP_001977405.1| GG19025 [Drosophila erecta]
 gi|190649054|gb|EDV46332.1| GG19025 [Drosophila erecta]
          Length = 1210

 Score = 39.5 bits (90), Expect = 0.91,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 58/207 (28%), Gaps = 22/207 (10%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            +++A RG GK+     + +        +++   +     L   L+  V K    L ++ 
Sbjct: 477 MSLTAARGRGKSAAL-GLSIAAAVAFGYVNVYVTSPHPENLIT-LFEFVLKGFDALEYQE 534

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +   +    + +   ++  ++   S+              +            +  DE
Sbjct: 535 HADYTIIRSTNADYKKAIIRINITRSSRQTIQYIAPSDTHLLNAAD--------LLLIDE 586

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
           A+  P       L    ++       M S         Y+     L      Q+      
Sbjct: 587 AAAIP-------LPLVKKMIGPYLVFMASTING-----YEGTGRSLSLKLISQLQKDNNA 634

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILG 286
                  E I  +   D +   I +L 
Sbjct: 635 RPPLKLEESIRYQENDDIEKWLINLLC 661


>gi|190345830|gb|EDK37782.2| hypothetical protein PGUG_01880 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 952

 Score = 39.5 bits (90), Expect = 0.91,   Method: Composition-based stats.
 Identities = 22/222 (9%), Positives = 53/222 (23%), Gaps = 25/222 (11%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            +QL+ +  +       +N               G+GKT + +  +L  ++    +    
Sbjct: 170 EYQLKGLNWLANLYDQGINGILADEM--------GLGKT-VQSISVLAYLAEHHNIWGPF 220

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
              + +   +    E+++++       ++           +      +S+          
Sbjct: 221 FVVTPSSTLHNWQQEIARFVPEFKVLPYWGNAKDRKILRKF---WDRKSLRYGKDAPFHV 277

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232
             T  +                +  DEA         S        +     ++T     
Sbjct: 278 LVTSYQLVVADAAYFQKMKWQYMILDEAQAIKSSQ-SSRWKTLLSFSCRNRLLLTGTP-- 334

Query: 233 LNGWFYDIFNIPLEDW---KRYQIDTRTVEGIDSGFHEGIIS 271
                  I N   E W                 S +    I 
Sbjct: 335 -------IQNSMQELWALLHFIMPSLFDSHDEFSEWFSKDIE 369


>gi|159153044|gb|ABW93030.1| lethal (1) G0020 [Drosophila simulans]
          Length = 244

 Score = 39.5 bits (90), Expect = 0.91,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 58/207 (28%), Gaps = 22/207 (10%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            +++A RG GK+     + +        +++   +     L   L+  V K    L ++ 
Sbjct: 18  MSLTAARGRGKSAAL-GLSIAAAVAFGYVNVYVTSPHPENLIT-LFEFVLKGFDALEYQE 75

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +   +    + +   ++  ++   S+              +            +  DE
Sbjct: 76  HADYTIIRSTNADYKKAIIRINITRSSRQTIQYIAPSDTHLLNAAD--------LLLIDE 127

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
           A+  P       L    ++       M S         Y+     L      Q+      
Sbjct: 128 AAAIP-------LPLVKKMIGPYLVFMASTING-----YEGTGRSLSLKLISQLQKDNNA 175

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILG 286
                  E I  +   D +   I +L 
Sbjct: 176 RPPLKLEESIRYQENDDIEKWLINLLC 202


>gi|150399457|ref|YP_001323224.1| Hef nuclease [Methanococcus vannielii SB]
 gi|150012160|gb|ABR54612.1| ERCC4 domain protein [Methanococcus vannielii SB]
          Length = 776

 Score = 39.5 bits (90), Expect = 0.91,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 45/144 (31%), Gaps = 12/144 (8%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
           G G+GKT + A + +  I ++    ++ IA S           +        +       
Sbjct: 36  GTGLGKTAIAA-LTIAGILSKRNGKVLIIAPS---------RPLVDQHQKSMNSFLNIDP 85

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
              +  +G  + L  + M    K +  T +    +               +  DEA  T 
Sbjct: 86  EKIIVLNGKISPLKREEMWKTGKIFIATPQVAENDIISG--ILKTKDFSLLIADEAHHTT 143

Query: 205 DIINKSILGFFTELNPNRFWIMTS 228
              + + +    + N +   +  S
Sbjct: 144 GNHSYTFVANTFKQNSHILGLTAS 167


>gi|150020730|ref|YP_001306084.1| DEAD/DEAH box helicase domain-containing protein [Thermosipho
           melanesiensis BI429]
 gi|149793251|gb|ABR30699.1| DEAD/DEAH box helicase domain protein [Thermosipho melanesiensis
           BI429]
          Length = 514

 Score = 39.5 bits (90), Expect = 0.92,   Method: Composition-based stats.
 Identities = 33/304 (10%), Positives = 77/304 (25%), Gaps = 39/304 (12%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
            +  E         +           + A  G GKT      ++ L+ ++  +  I +  
Sbjct: 18  EKGFEKPTPVQKRVIPILLNKEKNLIVQAKTGTGKTAAFGIPLIELLESKGYVQAIILTP 77

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
           +          E++                L + P      +  Q   +      +    
Sbjct: 78  TRELALQVS-EEINSLKRK----------RLKILPVYGGQSISRQIEHLKRGVDIVVGTP 126

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNRFWIMTSN--TRR 232
                         +       DEA           +       +  + ++M S    RR
Sbjct: 127 GRILDHLERKTIDLSKVEYFILDEADEMLDMGFIDDVEKILKSTSDEKIFLMFSATIPRR 186

Query: 233 LNGWF------YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA-----R 281
           +          Y++  I  +       +   +E  ++   E +     ++ D       R
Sbjct: 187 IIDLAKKYIKNYEVIKIADKQLTTNLTEQIYIELNENDKFEALCRIIDVEDDFYGMVFCR 246

Query: 282 IEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL-----------IMGCDIAGEGGD 330
            ++            I   Y  EA+  +        +           ++  D+A  G D
Sbjct: 247 TKVEVDNVSS---KLIERGYDAEALHGDFSQYQRERVLKKFKEKRINILVATDVAARGID 303

Query: 331 KTVV 334
            + +
Sbjct: 304 ISGL 307


>gi|295090111|emb|CBK76218.1| CRISPR-associated helicase, Cas3 family [Clostridium cf.
           saccharolyticum K10]
          Length = 758

 Score = 39.5 bits (90), Expect = 0.93,   Method: Composition-based stats.
 Identities = 18/211 (8%), Positives = 56/211 (26%), Gaps = 15/211 (7%)

Query: 77  IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN--TLWAEVSKWLSM 134
           +F+  +    G GKT  +    L   +      +I +    + ++    +++++    ++
Sbjct: 244 LFRLTV--PTGGGKTISSLAFALRHGAEHEMKRVIYVIPYTSIIEQNAKIFSDILGRENV 301

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194
           L      + +S        +         +          +    +       HN     
Sbjct: 302 LEDHCNIDYESDEE-LKPLHLAAENWDKPVVVTTNVQFFESLFSIKSSKCRKLHNIADSV 360

Query: 195 VFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTR-----RLNGWFYDIFNIPL 245
           +  DEA   P         ++                +        R +  + ++     
Sbjct: 361 IIFDEAQMLPCEYLRPCIAAMEELLLRYRSTLVLCTATQPALGGLFRKSITWEELCPDRE 420

Query: 246 EDWKRY-QIDTRTVEGIDSGFHEGIISRYGL 275
           E ++ + +     +  I        + +   
Sbjct: 421 EQFQFFKRCQILNLGRIRREELIDRLEQEDQ 451


>gi|169608259|ref|XP_001797549.1| hypothetical protein SNOG_07199 [Phaeosphaeria nodorum SN15]
 gi|160701604|gb|EAT85850.2| hypothetical protein SNOG_07199 [Phaeosphaeria nodorum SN15]
          Length = 1484

 Score = 39.5 bits (90), Expect = 0.93,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 57/227 (25%), Gaps = 17/227 (7%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKTT  A ++        G S++  + + T + N L    S  + +L      ++   
Sbjct: 1029 GTGKTTTIAHII--RTLVAKGKSVLLTSYTHTAVDNILLKIKSDKIGILRLGASAKIHPD 1086

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
             +      A   + S+    K +       +          +         DEAS     
Sbjct: 1087 -VREFATLAAEPKDSLEALEKSWMEPPVVATTCLTINHPLFNRRIFDYCIVDEASQIT-- 1143

Query: 207  INKSILGFFTELNPNRFWIMTSN-TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265
                 LG                    +             D   +++            
Sbjct: 1144 -LPVCLGPIRMSRKFILVGDHYQLPPLVQN---KEAMEGGLDVSLFKMLCEAHPQAVVSL 1199

Query: 266  HEGIISRYG----LDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR 308
                          ++ +    +   F   +    I  +  +++ SR
Sbjct: 1200 EHQYRMCADIMLLSNTFIYSGRLKCVFINTD---LISQSLEDQSGSR 1243


>gi|16273110|ref|NP_439344.1| DNA-dependent helicase II [Haemophilus influenzae Rd KW20]
 gi|1174922|sp|Q02322|UVRD_HAEIN RecName: Full=DNA helicase II
 gi|1574115|gb|AAC22841.1| DNA helicase II (uvrD) [Haemophilus influenzae Rd KW20]
          Length = 727

 Score = 39.5 bits (90), Expect = 0.93,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 81/302 (26%), Gaps = 29/302 (9%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIA 114
           E ++ ++      V           + AG G GKT +    + WLI+       SI+ + 
Sbjct: 6   ELLDGLNDKQRERVAAPLGNH---LVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 62

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            +            S       H+ +          +          +G+      +   
Sbjct: 63  FTNKAAAEMRHRIQSTLAKHAQHQLFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSE 122

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
                     +  HN        DE +  P       +    +               + 
Sbjct: 123 -DQLRLIKRLLKLHN-------FDEKAF-PPKQACWYINNKKDEGLR--------PNDIE 165

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294
            +        ++ ++ YQ        +D       +        +       +F    V+
Sbjct: 166 DFNDRQEREWIKIYQIYQDTCDRAGLVDFAELLIRVYELFEKKPLILQRYQQRFQHILVD 225

Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354
            F   N I+     + +      +++  D      D++ +   RG  IE+I  +      
Sbjct: 226 EFQDTNKIQYK-WIKILAGKTGQVMIVGD-----DDQS-IYGWRGAQIENIQKFLKDFKA 278

Query: 355 ET 356
           ET
Sbjct: 279 ET 280


>gi|254483191|ref|ZP_05096424.1| UvrD/REP helicase domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214036562|gb|EEB77236.1| UvrD/REP helicase domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 717

 Score = 39.2 bits (89), Expect = 0.94,   Method: Composition-based stats.
 Identities = 43/306 (14%), Positives = 83/306 (27%), Gaps = 34/306 (11%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL--ISTRPGMSIICI 113
           ++  + +     +  +          + AG G GKT +    + WL         SI+ +
Sbjct: 1   MDVSDILSPLNEAQRDAVAAESQNMLVLAGAGSGKTRVLVHRIAWLIRAEEFSPWSILAV 60

Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173
             +    K       ++   ML               +            +   H+    
Sbjct: 61  TFTNKAAKEM----RNRIEEMLQIPSHGMWVGTFHGLA----------HRLLKAHWKEAG 106

Query: 174 RTYSEERPDTFVGPHNTHGMA--VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
              + +  D+         +   +  DE S  P       +    +       I      
Sbjct: 107 LPQNFQILDSDDQLRLVKRVCREMELDE-SRWPPKQAMWYINSQKDEGLRSQHI------ 159

Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291
                        L+ ++ Y+        +D            L S        G+F Q 
Sbjct: 160 -DAPHGDLYAQTMLQVYRAYEAACDRTGMVDFAELLLRAHELWLKSPEVLAHYQGRFRQI 218

Query: 292 EVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
            V+ F   N I+ A     +     P+I   D      D++ +   RG  IE+I  +   
Sbjct: 219 LVDEFQDTNTIQYA-WLRVLAGKDIPVIAVGD-----DDQS-IYGWRGAKIENIQRF-GD 270

Query: 352 LIQETN 357
             + T 
Sbjct: 271 DFKGTR 276


>gi|72160934|ref|YP_288591.1| superfamily I DNA/RNA helicase [Thermobifida fusca YX]
 gi|71914666|gb|AAZ54568.1| superfamily I DNA and RNA helicases [Thermobifida fusca YX]
          Length = 712

 Score = 39.2 bits (89), Expect = 0.94,   Method: Composition-based stats.
 Identities = 29/260 (11%), Positives = 53/260 (20%), Gaps = 29/260 (11%)

Query: 37  PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
           PWG      E        Q E + AV                   I AG G GKT     
Sbjct: 9   PWGRMPSAEEILRGLDPEQEEAVRAVRGP--------------VCILAGAGTGKTRAITH 54

Query: 97  MMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWY 154
            + + ++T   P   I+ +  +          E+   L  L           +       
Sbjct: 55  RIAYAVATGVVPEQQILAVTFTTRAA-----GEMRGRLRALGAPRVQARTFHAAALRQLS 109

Query: 155 AELLEQSMGIDSKHYTITCRTYSEERPD-TFVGPHNTHGMAVFNDEASGTPDIINKSILG 213
               +   G          +T +       F              E +            
Sbjct: 110 YFWADAVGGPKPTLIDSKIKTVAAAAHSCGFQVDRTELRDLAAEIEWAKVTQTRPTDYET 169

Query: 214 FFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRY 273
              +              R     Y+ +     +      ++     +            
Sbjct: 170 AVAKEGRTPPM-----PPRDVARVYEAYEELRSEHNLLDFESML--ELTVAMIHERPDIA 222

Query: 274 GLDSDVARIEILGQFPQQEV 293
                  R  ++ +F     
Sbjct: 223 ERIRSQYRYFVVDEFQDVNP 242


>gi|330468685|ref|YP_004406428.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora
           maris AB-18-032]
 gi|328811656|gb|AEB45828.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora
           maris AB-18-032]
          Length = 566

 Score = 39.2 bits (89), Expect = 0.94,   Method: Composition-based stats.
 Identities = 24/202 (11%), Positives = 47/202 (23%), Gaps = 24/202 (11%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
            + +P   Q E +                        A  G GKT   A   L L+   P
Sbjct: 34  GYEEPTPIQREAI------------GPLLAGRDLLGQAATGTGKT---AAFALPLLQRMP 78

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG-ID 165
                    +   +   L       + +    H +     +     +  + + + +  +D
Sbjct: 79  DER-----PTGDPVALVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIGRQLRALD 133

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFF--TELNPNR 222
           +    +                   +   V  DEA         + I      T      
Sbjct: 134 NGVDVVVATPGRALDHIARGTLRLGNLATVVLDEADEMLDMGFAEDIEAILEHTPEQRQT 193

Query: 223 FWIMTSNTRRLNGWFYDIFNIP 244
                +   R++G        P
Sbjct: 194 VLFSATMPSRIDGMARAHLTDP 215


>gi|159153064|gb|ABW93040.1| lethal (1) G0020 [Drosophila melanogaster]
          Length = 244

 Score = 39.2 bits (89), Expect = 0.94,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 58/207 (28%), Gaps = 22/207 (10%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            +++A RG GK+     + +        ++I   +     L   L+  V K    L ++ 
Sbjct: 18  MSLTAARGRGKSAAL-GLSIAAAVAFGYVNIYVTSPHPENLIT-LFEFVLKGFDALEYQE 75

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +   +    + +   ++  ++   S+              +            +  DE
Sbjct: 76  HADYTIIRSTNADYKKAIIRINITRSSRQTIQYIAPSDTHLLNAAD--------LLLIDE 127

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
           A+  P       L    ++       M S         Y+     L      Q+      
Sbjct: 128 AAAIP-------LPLVKKMIGPYLVFMASTING-----YEGTGRSLSLKLISQLQKDNNA 175

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILG 286
                  E I  +   D +   I +L 
Sbjct: 176 RPPLKLEESIRYQENDDIEKWLINLLC 202


>gi|159153046|gb|ABW93031.1| lethal (1) G0020 [Drosophila melanogaster]
 gi|159153048|gb|ABW93032.1| lethal (1) G0020 [Drosophila melanogaster]
 gi|159153050|gb|ABW93033.1| lethal (1) G0020 [Drosophila melanogaster]
 gi|159153052|gb|ABW93034.1| lethal (1) G0020 [Drosophila melanogaster]
 gi|159153054|gb|ABW93035.1| lethal (1) G0020 [Drosophila melanogaster]
 gi|159153056|gb|ABW93036.1| lethal (1) G0020 [Drosophila melanogaster]
 gi|159153058|gb|ABW93037.1| lethal (1) G0020 [Drosophila melanogaster]
 gi|159153060|gb|ABW93038.1| lethal (1) G0020 [Drosophila melanogaster]
 gi|159153062|gb|ABW93039.1| lethal (1) G0020 [Drosophila melanogaster]
 gi|159153066|gb|ABW93041.1| lethal (1) G0020 [Drosophila melanogaster]
 gi|159153068|gb|ABW93042.1| lethal (1) G0020 [Drosophila melanogaster]
          Length = 244

 Score = 39.2 bits (89), Expect = 0.94,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 58/207 (28%), Gaps = 22/207 (10%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            +++A RG GK+     + +        ++I   +     L   L+  V K    L ++ 
Sbjct: 18  MSLTAARGRGKSAAL-GLSIAAAVAFGYVNIYVTSPHPENLIT-LFEFVLKGFDALEYQE 75

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +   +    + +   ++  ++   S+              +            +  DE
Sbjct: 76  HADYTIIRSTNADYKKAIIRINITRSSRQTIQYIAPSDTHLLNAAD--------LLLIDE 127

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
           A+  P       L    ++       M S         Y+     L      Q+      
Sbjct: 128 AAAIP-------LPLVKKMIGPYLVFMASTING-----YEGTGRSLSLKLISQLQKDNNA 175

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILG 286
                  E I  +   D +   I +L 
Sbjct: 176 RPPLKLEESIRYQENDDIEKWLINLLC 202


>gi|148927603|ref|ZP_01811071.1| hypothetical protein TM7_0318 [candidate division TM7 genomosp.
           GTL1]
 gi|147887052|gb|EDK72552.1| hypothetical protein TM7_0318 [candidate division TM7 genomosp.
           GTL1]
          Length = 284

 Score = 39.2 bits (89), Expect = 0.94,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 49/171 (28%), Gaps = 22/171 (12%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM-LWLISTRPGMS-IICIAN 115
           F   +      ++          A+ A RG GK+T+   +  LW +        I+ ++ 
Sbjct: 50  FQREIYDLLADDLVGY------MAVVAFRGSGKSTIATQIFPLWALIGNLEKKFILTLSL 103

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
           ++ Q +N L     +       R  F          G  + +  +        Y      
Sbjct: 104 NQNQARNHLQNIKRQIEGNELLRKDFGPLEQQSDEWGSMSLVFPK--------YGARISA 155

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226
            S E+    +         +  D      D+ + + +      N    W  
Sbjct: 156 ASTEQSIRGIRHGAYRPDLIIAD------DVEDSNSVKTMEGRNKTHDWFT 200


>gi|33636497|gb|AAQ23546.1| RE64686p [Drosophila melanogaster]
          Length = 1008

 Score = 39.2 bits (89), Expect = 0.94,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 58/207 (28%), Gaps = 22/207 (10%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            +++A RG GK+     + +        ++I   +     L   L+  V K    L ++ 
Sbjct: 275 MSLTAARGRGKSAAL-GLSIAAAVAFGYVNIYVTSPHPENLIT-LFEFVLKGFDALEYQE 332

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +   +    + +   ++  ++   S+              +            +  DE
Sbjct: 333 HADYTIIRSTNADYKKAIIRINITRSSRQTIQYIAPSDTHLLNAAD--------LLLIDE 384

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
           A+  P       L    ++       M S         Y+     L      Q+      
Sbjct: 385 AAAIP-------LPLVKKMIGPYLVFMASTING-----YEGTGRSLSLKLISQLQKDNNA 432

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILG 286
                  E I  +   D +   I +L 
Sbjct: 433 RPPLKLEESIRYQENDDIEKWLINLLC 459


>gi|24640662|ref|NP_572503.1| lethal (1) G0020 [Drosophila melanogaster]
 gi|32172463|sp|Q9W3C1|U202_DROME RecName: Full=Polycomb protein l(1)G0020; AltName: Full=p110
 gi|22833026|gb|AAF46410.2| lethal (1) G0020 [Drosophila melanogaster]
          Length = 1008

 Score = 39.2 bits (89), Expect = 0.94,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 58/207 (28%), Gaps = 22/207 (10%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            +++A RG GK+     + +        ++I   +     L   L+  V K    L ++ 
Sbjct: 275 MSLTAARGRGKSAAL-GLSIAAAVAFGYVNIYVTSPHPENLIT-LFEFVLKGFDALEYQE 332

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +   +    + +   ++  ++   S+              +            +  DE
Sbjct: 333 HADYTIIRSTNADYKKAIIRINITRSSRQTIQYIAPSDTHLLNAAD--------LLLIDE 384

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
           A+  P       L    ++       M S         Y+     L      Q+      
Sbjct: 385 AAAIP-------LPLVKKMIGPYLVFMASTING-----YEGTGRSLSLKLISQLQKDNNA 432

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILG 286
                  E I  +   D +   I +L 
Sbjct: 433 RPPLKLEESIRYQENDDIEKWLINLLC 459


>gi|332873098|ref|ZP_08441055.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter baumannii
           6014059]
 gi|332738610|gb|EGJ69480.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter baumannii
           6014059]
          Length = 587

 Score = 39.2 bits (89), Expect = 0.95,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 37/149 (24%), Gaps = 16/149 (10%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
            E ++ +                   I+ G G GKT   A ++  L    P + +   A 
Sbjct: 122 EEHLDLLTDPHQQAALQMVTRQSLSIITGGPGTGKTYTLARIIAVLSQAIPHIRVAMAAP 181

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
           +    +                     +Q+    P    + L+   +   S         
Sbjct: 182 TGKAAQRM----------------QEALQNSFNDPKLLESGLISAELRNQSTQTIHRLLG 225

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTP 204
               +   F          +  DEAS   
Sbjct: 226 MGHSQTPRFNQKQPLPYDVIVVDEASMLD 254


>gi|296876617|ref|ZP_06900666.1| ATP-dependent RNA helicase [Streptococcus parasanguinis ATCC 15912]
 gi|296432376|gb|EFH18174.1| ATP-dependent RNA helicase [Streptococcus parasanguinis ATCC 15912]
          Length = 799

 Score = 39.2 bits (89), Expect = 0.95,   Method: Composition-based stats.
 Identities = 21/175 (12%), Positives = 42/175 (24%), Gaps = 9/175 (5%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
            F  P     E    +         N +  I++  +    G GKT L+       +  + 
Sbjct: 250 GFDNPTTRLNEVRLQISERVKERGENDSAGIYRLDL--PTGAGKTNLSMRYAFHQLVKQK 307

Query: 107 GMSIICIANSETQLKNTLWAEVSKW------LSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
                 I    + L+    +E+ K       L    +    +  +           +   
Sbjct: 308 KSRYFYITPFLSVLEQNA-SEIKKITGDAGVLEHHSNVIHKDDDNDDKKTLMLDYLIDSW 366

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
              I         +T  + +        N     +  DE    P  +        
Sbjct: 367 DSQIILTSMVQFFQTLFKTKSSNIRRFSNLANSVLILDEVQSLPIEVTTLFNLTM 421


>gi|225868893|ref|YP_002744841.1| RNA helicase [Streptococcus equi subsp. zooepidemicus]
 gi|225702169|emb|CAW99874.1| putative RNA helicase [Streptococcus equi subsp. zooepidemicus]
          Length = 364

 Score = 39.2 bits (89), Expect = 0.95,   Method: Composition-based stats.
 Identities = 20/189 (10%), Positives = 41/189 (21%), Gaps = 13/189 (6%)

Query: 51  PHRWQLEFMEAVDVHC---HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107
           P +WQ +  +    +       V             +  G GKT    W  L  +S +  
Sbjct: 6   PTQWQEKLAKLGFTNLTPIQEQVFQPIVDGKSLLGISPTGTGKTLAYLWPSLLRLSPKKA 65

Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
             ++ +A +       L+    +W   L       +   S                +   
Sbjct: 66  QQLLILAPNTELAGQ-LFEVTKEWAEPLGLTAQLFISGSSQKRQIE---------RLKKG 115

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
              I                       +  DE            +   +   P    ++ 
Sbjct: 116 PEIIIGTPGRIFELVKLKKIKMMAINTIILDEYDDLLSDSQYQFVQKLSHHAPRDHQMIY 175

Query: 228 SNTRRLNGW 236
            +       
Sbjct: 176 MSATNKVDQ 184


>gi|225457229|ref|XP_002284129.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297733882|emb|CBI15129.3| unnamed protein product [Vitis vinifera]
          Length = 2093

 Score = 39.2 bits (89), Expect = 0.95,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 48/157 (30%), Gaps = 21/157 (13%)

Query: 45   LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            L  FS  +  Q +    +    +              + A  G GKT      ML L +T
Sbjct: 1283 LYKFSHFNPIQTQTFHVLYHTDN-----------NVLLGAPTGSGKTISAELAMLHLFNT 1331

Query: 105  RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
            +P M +I IA  +  ++  +     + +S L       ++    +     A +    +  
Sbjct: 1332 QPDMKVIYIAPLKAIVRERMIDWKKRIVSQLGKE---MVEMTGDYTPDLMALMSADIIIS 1388

Query: 165  DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
              + +    R +           +      +  DE  
Sbjct: 1389 TPEKWDGISRNWH-------NRGYVKKVGLMILDEIH 1418


>gi|195977805|ref|YP_002123049.1| ATP-dependent RNA helicase DEAD/DEAH box family [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|195974510|gb|ACG62036.1| ATP-dependent RNA helicase DEAD/DEAH box family [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
          Length = 360

 Score = 39.2 bits (89), Expect = 0.95,   Method: Composition-based stats.
 Identities = 20/189 (10%), Positives = 41/189 (21%), Gaps = 13/189 (6%)

Query: 51  PHRWQLEFMEAVDVHC---HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107
           P +WQ +  +    +       V             +  G GKT    W  L  +S +  
Sbjct: 6   PTQWQEKLAKLGFTNLTPIQEQVFQPIVDGKSLLGISPTGTGKTLAYLWPSLLRLSPKKA 65

Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
             ++ +A +       L+    +W   L       +   S                +   
Sbjct: 66  QQLLILAPNTELAGQ-LFEVTKEWAEPLGLTAQLFISGSSQKRQIE---------RLKKG 115

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
              I                       +  DE            +   +   P    ++ 
Sbjct: 116 PEIIIGTPGRIFELVKLKKIKMMAINTIILDEYDDLLSDSQYQFVQKLSHHAPRDHQMIY 175

Query: 228 SNTRRLNGW 236
            +       
Sbjct: 176 MSATNKVDQ 184


>gi|184156690|ref|YP_001845029.1| exonuclease V subunit alpha [Acinetobacter baumannii ACICU]
 gi|183208284|gb|ACC55682.1| ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase
           superfamily I member [Acinetobacter baumannii ACICU]
 gi|322506577|gb|ADX02031.1| recD [Acinetobacter baumannii 1656-2]
 gi|323516456|gb|ADX90837.1| exonuclease V subunit alpha [Acinetobacter baumannii TCDC-AB0715]
          Length = 583

 Score = 39.2 bits (89), Expect = 0.95,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 37/149 (24%), Gaps = 16/149 (10%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
            E ++ +                   I+ G G GKT   A ++  L    P + +   A 
Sbjct: 118 EEHLDLLTDPHQQAALQMVTRQSLSIITGGPGTGKTYTLARIIAVLSQAIPHIRVAMAAP 177

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
           +    +                     +Q+    P    + L+   +   S         
Sbjct: 178 TGKAAQRM----------------QEALQNSFNDPKLLESGLISAELRNQSTQTIHRLLG 221

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTP 204
               +   F          +  DEAS   
Sbjct: 222 MGHSQTPRFNQKQPLPYDVIVVDEASMLD 250


>gi|146329137|ref|YP_001209325.1| exonuclease V, alpha subunit [Dichelobacter nodosus VCS1703A]
 gi|146232607|gb|ABQ13585.1| exonuclease V, alpha subunit [Dichelobacter nodosus VCS1703A]
          Length = 524

 Score = 39.2 bits (89), Expect = 0.95,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 39/140 (27%), Gaps = 22/140 (15%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
            I+ G G GKT   A ++  L++  P ++I   A +    +    A    +++    R  
Sbjct: 133 IINGGPGTGKTFTVARIVAALLARDPDLTIALAAPTGKAAQRLEIALHQAFITAQLTRPT 192

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
               + ++H           +      ++                         V  DEA
Sbjct: 193 QLTTAQTVHRLLGVD--NTGTARYHEHYFLP--------------------YDVVIIDEA 230

Query: 201 SGTPDIINKSILGFFTELNP 220
           S     +   +         
Sbjct: 231 SMLSLELAAQLFQALAPHTR 250


>gi|330844486|ref|XP_003294155.1| hypothetical protein DICPUDRAFT_43010 [Dictyostelium purpureum]
 gi|325075435|gb|EGC29323.1| hypothetical protein DICPUDRAFT_43010 [Dictyostelium purpureum]
          Length = 392

 Score = 39.2 bits (89), Expect = 0.96,   Method: Composition-based stats.
 Identities = 24/254 (9%), Positives = 59/254 (23%), Gaps = 48/254 (18%)

Query: 42  GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101
           G     + +P   Q   ++A+ +        +             G GKT +   + L  
Sbjct: 48  GLEDAGYIKPSPIQ---LKAIPLGISGIDMIAQAKS---------GTGKTVVFGVIALDY 95

Query: 102 IST----RPGMSIICIANSETQLKNT--LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
                       ++ +A +         +  ++SK+   +  + +               
Sbjct: 96  CEMVGGVPRKPLVLIMAPTREIAVQIGDVVKQISKYCKRIKTQVFI------------GG 143

Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI---L 212
              +  +   +    I       +     +         +  DEA    D     I   +
Sbjct: 144 LKEDNDIHRLAGSQIIVGTPGRIKSLIENLQLRTDTLKMLILDEADKLLDASFTKIINWI 203

Query: 213 GFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP---------------LEDWKRYQIDTRT 257
                 N        +    L          P                + ++ ++    T
Sbjct: 204 YTTMPANRQILAFSATYPSYLINILQAYMKSPIQIRLCSDTPSLEGIKQYYQVFKNPNST 263

Query: 258 VEGIDSGFHEGIIS 271
             G +    +  I 
Sbjct: 264 NPGTNYKLFQEKIK 277


>gi|291520948|emb|CBK79241.1| DNA or RNA helicases of superfamily II [Coprococcus catus GD/7]
          Length = 920

 Score = 39.2 bits (89), Expect = 0.96,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 78/229 (34%), Gaps = 35/229 (15%)

Query: 16  HEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQP-HRWQLEFMEAVD--------VHC 66
            E L  A+  L+F+NF+  +     K K ++   +   + Q+  +EA             
Sbjct: 113 FEKLWDADQALTFENFIEFYTDIYTKNKIIQRQKELVRQEQMPSLEAFRLQPNSMQVGFI 172

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126
            +     +    +  + +  G GKT  +A+ M  L   R    I+ + +     K     
Sbjct: 173 RNLQKIYDAGEKRALLISATGTGKTYASAFAMRELGFQR----ILFLVHRGQIAKQ---- 224

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
                      ++ F+         G            DS     T +T+S+E  D    
Sbjct: 225 ----------AKNSFKKVFAGTRSMGLVTGN---YQNYDSDVIFATIQTFSKE--DVLSK 269

Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
              T   A+  DEA  +     K ++ +FT   P  +  MT+   + + 
Sbjct: 270 YSRTAFDAIVIDEAHHSAANSYKKVMDYFT---PRLWLGMTATPDKRDD 315


>gi|156543742|ref|XP_001605981.1| PREDICTED: similar to conserved hypothetical protein [Nasonia
            vitripennis]
          Length = 1277

 Score = 39.2 bits (89), Expect = 0.96,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 52/204 (25%), Gaps = 27/204 (13%)

Query: 53   RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            +W  + +         NV           I    G GKT      +L ++ T     I+ 
Sbjct: 808  KWFNKRLNKYQKEAVKNVLKGLARPLPYVIFGPPGTGKTITVCEAILQILFTMSESRILI 867

Query: 113  IANSETQLKNTLWAEVSKW------LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
               S +         +         L  L   H+ E +S+      +       S G   
Sbjct: 868  ATPSNSSANLIAERLLDSNLLKPGDLIRLVAHHYLESESIPEKLIPYCVTADIASEGSRG 927

Query: 167  KHYTITCRTYSEERPDTFVGPH-------------------NTHGMAVFNDEASGTPDII 207
                I  R        + +  H                   + H   V  DEA    +  
Sbjct: 928  DVNHIDPRGCKTNVTLSVLCQHRMIIGTCSALGILYNMGCKSDHFTHVIVDEAGQACEP- 986

Query: 208  NKSILGFFTELNPNRFWIMTSNTR 231
             + ++      +     I+  + +
Sbjct: 987  -EIMIPLSLAHSGTTQVILAGDPK 1009


>gi|148976212|ref|ZP_01812936.1| hypothetical protein VSWAT3_18418 [Vibrionales bacterium SWAT-3]
 gi|145964306|gb|EDK29561.1| hypothetical protein VSWAT3_18418 [Vibrionales bacterium SWAT-3]
          Length = 711

 Score = 39.2 bits (89), Expect = 0.96,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 47/177 (26%), Gaps = 35/177 (19%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             ++A RG GK++        L++ RPG +I+  A S                       
Sbjct: 190 LILTADRGRGKSSTLGIAAALLLAERPGFNIVVTAPS----------------------- 226

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                  ++ P   +A+    S  + +  +               +         +  DE
Sbjct: 227 -----VKAIEPVFSHAKQRLDSCEVVNATHICHQGGSLRFVAPDELLKSKPECDLLLVDE 281

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256
           A+  P       +     +  +   +  S T          F I  E W        
Sbjct: 282 AAAIP-------IPMLKSMVDSYHRMAFSTTVHGYEGSGRGFGIKFEAWLSKHRPGW 331


>gi|190410694|ref|YP_001965264.1| hypothetical protein pFRL1.58c [Streptomyces sp. FR1]
 gi|84872709|gb|ABC67446.1| hypothetical protein pFRL1.58c [Streptomyces sp. FR1]
          Length = 901

 Score = 39.2 bits (89), Expect = 0.96,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 38/173 (21%), Gaps = 30/173 (17%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q             +     P   +  I +  G GKT   A   L    +     I+   
Sbjct: 13  QRSAFRRWVGFPARSSVP--PQGARGTIVSATGSGKTITAAACAL---ESFADGRILVTV 67

Query: 115 NSETQLKNTLWA----------------EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
            +   L  T  A                E    L+ L  R       L+L        + 
Sbjct: 68  PTLDLLAQTAQAWRLVGHRAPMVAVCSLENDAVLNSLGVRTTTNPIQLALWAGSGPVVVF 127

Query: 159 EQSMGIDSKHYTITCRTYSEER---------PDTFVGPHNTHGMAVFNDEASG 202
                +  +          + R          +   G           DEA G
Sbjct: 128 ATYASLVDREDVDAPEGQRKVRGPLEAALAGGERLYGQRMDGFDLAIVDEAHG 180


>gi|332158624|ref|YP_004423903.1| DEXX-box atpase [Pyrococcus sp. NA2]
 gi|331034087|gb|AEC51899.1| DEXX-box atpase [Pyrococcus sp. NA2]
          Length = 397

 Score = 39.2 bits (89), Expect = 0.98,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 47/174 (27%), Gaps = 16/174 (9%)

Query: 32  VMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT 91
           +    PW              RW+ + +                  F   +   R +GKT
Sbjct: 6   LTYMNPWWEG----REDYHVRRWREQRLHWRPKWLERLSLRPFSLNF---VLGPRQVGKT 58

Query: 92  TLNAWMMLWLISTRPGMSIICIA----NSETQLKNTLWAEVSKWLSMLPHR----HWFEM 143
           T    M+  L+   P  +++ I      S  +L N L  E  +       +       E+
Sbjct: 59  TGIKLMIQELLKDNPPEAVLYINVEVLPSHHELLNLL-REFQELKEKEGIKIGYVFLDEV 117

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
            SL     G    +    +  D    T +         + F G      +    
Sbjct: 118 TSLEGWWRGVKPLIDAGLLERDVITVTGSSSLRVRRDIELFPGRRGGGRIIEVM 171


>gi|284053981|ref|ZP_06384191.1| PhoH-like protein [Arthrospira platensis str. Paraca]
 gi|291567510|dbj|BAI89782.1| phosphate starvation-inducible protein [Arthrospira platensis
           NIES-39]
          Length = 317

 Score = 39.2 bits (89), Expect = 0.98,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 48/185 (25%), Gaps = 25/185 (13%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS--------AGRGIGKTTLNAWMMLWLIS 103
              Q + +                  +  AI            G GKT L A + L  + 
Sbjct: 94  RELQQDVLARTRRGQDIRAKTFRQRQYIQAIRTHDLTFCIGPAGTGKTYLAAIIALQALL 153

Query: 104 TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
           +     +I    +             +    L        Q ++ +    Y  +    + 
Sbjct: 154 SDQYERLILTRPA------------VEAGERLGFLPGDLQQKVNPYLRPLYDAIY--ELV 199

Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
              K   +  R   E  P  ++     +   V  DEA  T     K +    T L     
Sbjct: 200 DPEKAANLMERGVIEVAPIAYMRGRTLNNSFVILDEAQNTTPGQMKMV---LTRLGSRSR 256

Query: 224 WIMTS 228
            ++T 
Sbjct: 257 MVVTG 261


>gi|284006731|emb|CBA71988.1| ATP-dependent RNA helicase [Arsenophonus nasoniae]
          Length = 449

 Score = 39.2 bits (89), Expect = 0.98,   Method: Composition-based stats.
 Identities = 22/191 (11%), Positives = 46/191 (24%), Gaps = 18/191 (9%)

Query: 83  SAGRGIGKTTLNAWMMLWLISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
           S+  G GKT      ++  +   P        I+ +  +         AE +K L+   H
Sbjct: 54  SSPTGTGKTAAYLLPVIQHLLDFPRKRSGPPRILILTPTRELAMQV--AEQAKALAKYTH 111

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
                +     + +        Q +        +   T    +              +  
Sbjct: 112 LDIATITGGVSYVNHAEIFSENQDI--------VVATTGRLLQYIKEENFDCRAIETLIL 163

Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257
           DEA    D+   + +         R   M  +        +D     L +          
Sbjct: 164 DEADRMLDMGFANDIETIAGETRWRKQTMLFSATLAGEAIHDFAERLLNNPHEID---AD 220

Query: 258 VEGIDSGFHEG 268
               +    + 
Sbjct: 221 PSRRERKKIQQ 231


>gi|257451672|ref|ZP_05616971.1| metal dependent phosphohydrolase [Fusobacterium sp. 3_1_5R]
 gi|317058233|ref|ZP_07922718.1| metal dependent phosphohydrolase [Fusobacterium sp. 3_1_5R]
 gi|313683909|gb|EFS20744.1| metal dependent phosphohydrolase [Fusobacterium sp. 3_1_5R]
          Length = 801

 Score = 39.2 bits (89), Expect = 0.98,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 53/209 (25%), Gaps = 21/209 (10%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              + A  G+GKT       LW I    G  I+ +  +   + + +  ++ K   +    
Sbjct: 262 NVIVVAQTGLGKTEAG----LWWIGDHKGFFILPLRTAIDAIYDRIKNKIIKNDRVEERL 317

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKH--YTITCRTYSEERPDTFVGP-------HN 189
                +SL  +   W  E   Q          Y  T +        T             
Sbjct: 318 ALLHGESLESYLQLWEKEKELQEGSGFEWENYYIKTRQLSLPLTICTLDQLFPFVFRYRG 377

Query: 190 THGMA-------VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242
                       V  DE       +   ++   T +                G+  D+  
Sbjct: 378 YEAKLATMAYSKVVIDEVQMYGPDLVGFLIVGLTMIQKMGGKFAILTATFP-GFIKDLMR 436

Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271
               ++K      +        + +  I+
Sbjct: 437 EQGLEFKMSTPYVKEESRHSVQWIQKEIN 465


>gi|189502116|ref|YP_001957833.1| hypothetical protein Aasi_0717 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497557|gb|ACE06104.1| hypothetical protein Aasi_0717 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 1640

 Score = 39.2 bits (89), Expect = 0.98,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 309 EAIDDLYAPLIMGCDIAGEGGDKT--VVVFRRGNIIEHIF 346
           E  +  Y  ++M  D AG+G D+T   +  R G+    + 
Sbjct: 774 EPQEKKYDDVVMSIDPAGDGKDETGYCIAKRSGDYYFIVE 813


>gi|300173131|ref|YP_003772297.1| terminase large subunit [Leuconostoc gasicomitatum LMG 18811]
 gi|299887510|emb|CBL91478.1| terminase large subunit [Leuconostoc gasicomitatum LMG 18811]
          Length = 242

 Score = 39.2 bits (89), Expect = 0.98,   Method: Composition-based stats.
 Identities = 20/170 (11%), Positives = 53/170 (31%), Gaps = 18/170 (10%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAG-RGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
           E    +             +  +  +  G RG GK+   A  +++ I T+  ++ + +  
Sbjct: 3   EIEWNLPEMVSKAYAPLFNSKKRYIVYKGSRGSGKSEAEATKVIYDILTKSYVNWLVLRR 62

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
                + + +  + K  + +     F+  S                +        I  R 
Sbjct: 63  YANTNRQSTFTLLQKVANRMGVGSLFQFNSS------------LPEITYKPTGQKILFRG 110

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTP-----DIINKSILGFFTELNP 220
             +    T +     +   ++ +EA         D +++S+ G   + + 
Sbjct: 111 ADKPLSITSISVETGNLCRLWVEEAYQLELEDAFDTVDESMRGIIADPDG 160


>gi|297527461|ref|YP_003669485.1| DNA topoisomerase (ATP-hydrolyzing) [Staphylothermus hellenicus DSM
           12710]
 gi|297256377|gb|ADI32586.1| DNA topoisomerase (ATP-hydrolyzing) [Staphylothermus hellenicus DSM
           12710]
          Length = 1220

 Score = 39.2 bits (89), Expect = 0.98,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 36/124 (29%), Gaps = 5/124 (4%)

Query: 15  LHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV-HCHSNVNNS 73
           L +  +  +C    +N       +    + LE F     +  +    +            
Sbjct: 25  LWDFGVCGKCSGETRNSFNALTLYRAFKEDLEDF---TSFFRKATGNLKPWGAQLTWVKR 81

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
                   I A  G+GKTTL     +++     G  ++  A +    K      +    +
Sbjct: 82  LLNGENTVIVAPTGMGKTTLLVVYSVYVA-KNYGKKVLFFAPTRALAKQIYNRIIEAAEN 140

Query: 134 MLPH 137
           +   
Sbjct: 141 VCGT 144


>gi|262165307|ref|ZP_06033044.1| type I restriction-modification system restriction subunit R
           [Vibrio mimicus VM223]
 gi|262025023|gb|EEY43691.1| type I restriction-modification system restriction subunit R
           [Vibrio mimicus VM223]
          Length = 818

 Score = 39.2 bits (89), Expect = 0.98,   Method: Composition-based stats.
 Identities = 21/189 (11%), Positives = 42/189 (22%), Gaps = 24/189 (12%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
                P  +QL  +           N       +  +    G GKT   + +M  L    
Sbjct: 164 GSGKSPRYYQLNAISKTIEAISRGQN-------RILLVMATGTGKTYTASQIMWKLWKAN 216

Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
               I+ +A+    + + +                     L            E     +
Sbjct: 217 VKKRILFLADRNFLVDDPM-----------------RKDFLPFKDVMTKITGREIDPAYE 259

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225
            +       T  E+    F          +  DE          +        +      
Sbjct: 260 VQLALYQSTTGQEDHQKVFKQVSRDFFDLIIVDECHRGSASKESAWREILEYFDSATQIG 319

Query: 226 MTSNTRRLN 234
           +T+  +  N
Sbjct: 320 LTATPKETN 328


>gi|210075893|ref|XP_503715.2| YALI0E09012p [Yarrowia lipolytica]
 gi|199426896|emb|CAG79304.2| YALI0E09012p [Yarrowia lipolytica]
          Length = 1457

 Score = 39.2 bits (89), Expect = 0.98,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 61/240 (25%), Gaps = 34/240 (14%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR----PGM 108
            +QL+ +  +       +N               G+GKT  +  +M +L  T     P +
Sbjct: 699 EYQLKGLNWLANLYEQGINGILADEM--------GLGKTVQSISVMAYLAETHNIWGPYL 750

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            I   +            E+SK++       ++           +      +++      
Sbjct: 751 VIAPASTLHN-----WQQEISKFVPDFKVLPYWGNGKDRKILRKF---WDRKNVKYTRDS 802

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
                 T  +                +  DEA       +            NR  ++T 
Sbjct: 803 PFHVLVTSYQLVVSDAQYFSRVKWQYMILDEAQAIKSSSSSRWKSLLAFQCRNRL-LLTG 861

Query: 229 NTRRLNGWFYDIFNIPLEDW---KRYQIDTRTVEGIDSGFH-EGIISRYGLDSDVARIEI 284
                      I N   E W                 S +  + I S     S + + ++
Sbjct: 862 TP---------IQNSMQELWALLHFIMPSLFDSHDEFSEWFSKDIESHAKEKSQLDQQQL 912


>gi|145297543|ref|YP_001140384.1| hypothetical protein ASA_0464 [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850315|gb|ABO88636.1| conserved hypothetical protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 688

 Score = 39.2 bits (89), Expect = 0.98,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 61/225 (27%), Gaps = 49/225 (21%)

Query: 39  GIKGKPLEHFSQPHRWQ-----LEFMEAVDVHCHSNVNNSNPTIFKCAISAG-RGIGKTT 92
           G     L   + P  WQ         +   +   +     +    +  + +  RG GK++
Sbjct: 143 GDPALSLLPPTSPQPWQPIGAERPLSDDQALALPAIQRVLHGHRRRPLVLSADRGRGKSS 202

Query: 93  LNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSG 152
           L       L+  +P + I+  A S+  +   L+A  ++ L                    
Sbjct: 203 LLGLAAAGLLRQQPDLKIVVTAPSQATVAT-LFAHAARAL-------------------- 241

Query: 153 WYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212
                 + +             +      +            +  DEA+  P  + +++L
Sbjct: 242 ------DTTQEQLVGLEFC---SPDRLVHEALQP------DLLLVDEAAAIPTPLLEAML 286

Query: 213 GFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257
                       I+ + T          F++  +     Q     
Sbjct: 287 A-------RHSRIVFATTEHGYEGTGRGFHLRFKRVLDRQTPDWQ 324


>gi|118110894|ref|XP_428333.2| PREDICTED: similar to Activating signal cointegrator 1 complex
           subunit 3-like 1, partial [Gallus gallus]
          Length = 129

 Score = 39.2 bits (89), Expect = 0.98,   Method: Composition-based stats.
 Identities = 14/125 (11%), Positives = 27/125 (21%), Gaps = 10/125 (8%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              + A  G GKT    + +L ++        + I   E   +        K+   L  +
Sbjct: 10  NVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITPMEALAEQVFMDWYEKFQERLNKK 69

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                   S              +         T   +           +  +      D
Sbjct: 70  VVLLTGETSTDLK----------LLGKGNIIISTPEKWDILSRRWKQRKNVQNVNLFIVD 119

Query: 199 EASGT 203
           E    
Sbjct: 120 EVHLI 124


>gi|46580590|ref|YP_011398.1| terminase large subunit [Desulfovibrio vulgaris str. Hildenborough]
 gi|46450009|gb|AAS96658.1| terminase, large subunit, putative [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 641

 Score = 39.2 bits (89), Expect = 0.98,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 42/144 (29%), Gaps = 7/144 (4%)

Query: 35  FFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN 94
              W  +   +    +P RW+ E        C      S P I    I      GKT L 
Sbjct: 37  VTEWCERHFRIIGGQRPGRWRREVFPY---TCTIMDAYSLPFIRVIGICGPPQTGKTALE 93

Query: 95  AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWY 154
              + W I   PG  ++ + + +   +        + + +L      E     L      
Sbjct: 94  LGCLAWAIDRDPGP-VLMVLDQQDTAREMA---KDRVIPLLKASPPLEQYITGLADDETA 149

Query: 155 AELLEQSMGIDSKHYTITCRTYSE 178
             +  + M I         R  ++
Sbjct: 150 KSINLRHMTIHFGWAGSVSRLANK 173


>gi|168001533|ref|XP_001753469.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695348|gb|EDQ81692.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 624

 Score = 39.2 bits (89), Expect = 0.99,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 38/154 (24%), Gaps = 13/154 (8%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              +S   G+GKT + A +M       P   I+  A S   +      ++    +++   
Sbjct: 82  NTLVSLPTGLGKTLIAAVVMYNYFRWFPTGKIVFTAPSRPLVMQ----QIEACHNIMGIP 137

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               +           AE              +     S   P           + +  D
Sbjct: 138 QEMAIDMTGQMSPPQRAEEWRSRRVFYVTPQCLEKDIQSGTCPVN-------DIVCLVVD 190

Query: 199 EASGTPDIINK--SILGFFTELNPNRFWIMTSNT 230
           EA       +               R   +T+  
Sbjct: 191 EAHRATGNFSYCVVTRELLARNIKFRILALTATP 224


>gi|124027804|ref|YP_001013124.1| reverse gyrase [Hyperthermus butylicus DSM 5456]
 gi|123978498|gb|ABM80779.1| Reverse gyrase 2 [Hyperthermus butylicus DSM 5456]
          Length = 1183

 Score = 39.2 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 48/152 (31%), Gaps = 12/152 (7%)

Query: 56  LEFMEAVDVH----CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            EF E +  H                   AI A  G+GKTTL +   ++  S   G+ + 
Sbjct: 42  EEFFEKLTGHKLWSAQRTWAKRMLQGESIAIVAPTGVGKTTLLSVYAVYRASQ--GLKVY 99

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +  +E   +        + L  L  R    ++ +S + S       E+S+    +    
Sbjct: 100 YLLPTENLARQVT-----RKLETLSSRLGGGIRVVSYYSSLPK-RAKEESLRTIEERSYD 153

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
              T +      +         ++  D+    
Sbjct: 154 ILVTTTAFLSRRWSLIEGIRFDSILVDDVDAV 185


>gi|24372534|ref|NP_716576.1| ATP-dependent RNA helicase SrmB [Shewanella oneidensis MR-1]
 gi|24346546|gb|AAN54021.1|AE015540_1 ATP-dependent RNA helicase SrmB [Shewanella oneidensis MR-1]
          Length = 420

 Score = 39.2 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/223 (9%), Positives = 46/223 (20%), Gaps = 20/223 (8%)

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-----SIICIANSET 118
                               A  G GKT       L  +   P        ++ +  +  
Sbjct: 25  TTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQHLIDFPRRYSGQARVLILTPT-- 82

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
                   E++  +      H    Q L++           Q   +      +       
Sbjct: 83  -------RELASQIHRYAC-HLATDQGLNIAIITGGVPYAPQEEALKGNIDILVATPGRL 134

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWF 237
                           +  DEA    D+   +++     E    +  ++ S T   +G  
Sbjct: 135 MEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQNMLFSATLEGSGVI 194

Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280
                +  +  +            +       I          
Sbjct: 195 RFAREVLNDPIEID----VDAPRKEKAKIHQWIHLADDKDHKF 233


>gi|114048723|ref|YP_739273.1| ATP-dependent RNA helicase SrmB [Shewanella sp. MR-7]
 gi|113890165|gb|ABI44216.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 420

 Score = 39.2 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/223 (9%), Positives = 46/223 (20%), Gaps = 20/223 (8%)

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-----SIICIANSET 118
                               A  G GKT       L  +   P        ++ +  +  
Sbjct: 25  TTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQHLIDFPRRYSGQARVLILTPT-- 82

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
                   E++  +      H    Q L++           Q   +      +       
Sbjct: 83  -------RELASQIHRYAC-HLATDQGLNIAIITGGVPYAPQEEALKGNIDILVATPGRL 134

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWF 237
                           +  DEA    D+   +++     E    +  ++ S T   +G  
Sbjct: 135 MEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQNMLFSATLEGSGVI 194

Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280
                +  +  +            +       I          
Sbjct: 195 RFAREVLNDPIEID----VDAPRKEKAKIHQWIHLADDKDHKF 233


>gi|328791598|ref|XP_393083.4| PREDICTED: Fanconi anemia group M protein [Apis mellifera]
          Length = 1194

 Score = 39.2 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 54/212 (25%), Gaps = 19/212 (8%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              +    G+GKT + A +M       P   II +A ++  +   ++A            
Sbjct: 49  NTLVCLPTGLGKTFIAAVVMYNFWRWYPWGKIIFLAPTKPLVTQQIFAC----------- 97

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
           H       +       A  L++     SK   I                 +     +  D
Sbjct: 98  HNTMGIPSAETIELTGAINLKKREVAWSKKRIIFATPQVFHNDLNKNIVPSDLIKCIVID 157

Query: 199 EASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY-----Q 252
           EA            +      N N   +  S T        ++  +       +     +
Sbjct: 158 EAHKALGKHSYCECIRILNGKNQNFRVLALSATPG--NKIDNVHEVLQNLLIAHVELRDE 215

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
                V  I+    E I+          + + 
Sbjct: 216 TSLDIVPYINKKKVEIILVPLNNKLTEYKEKY 247


>gi|257052779|ref|YP_003130612.1| helicase domain protein [Halorhabdus utahensis DSM 12940]
 gi|256691542|gb|ACV11879.1| helicase domain protein [Halorhabdus utahensis DSM 12940]
          Length = 952

 Score = 39.2 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/246 (10%), Positives = 63/246 (25%), Gaps = 25/246 (10%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G+GKT     +   L++      I+ +      L++       +W     H    + Q  
Sbjct: 125 GLGKTIEAGLITSELLARNRAERILIVTP--ANLRD-------QWREAFEHFFHIDAQIT 175

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA------ 200
                    + +     +   +          ++        +     V  DEA      
Sbjct: 176 DRRNRRAMEKEVPPGTSVWEYYSKHIVSIDYAKQAHIHNQIRSQDWDMVIIDEAHQAARP 235

Query: 201 ----SGTPDIINKSILGFFTELNPNRFWIMTSNT-RRLNGWFYDIFNIPLEDWKRYQIDT 255
               +G      +         +     ++T+         F  +  +   D        
Sbjct: 236 HTASAGQAPSKLRWEFAKAITEDATHALLLTATPHNGYTDSFASLLRMVNSDIVAGDAH- 294

Query: 256 RTVEGIDSGFHEG--IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
                I+    +   +  R     +    +    FP+++           E  + +A+ D
Sbjct: 295 --NPSINQELAKRHVVQRRRKDVEEWFGDDNENPFPERDQATVDVTPTEYEKTAYDAVRD 352

Query: 314 LYAPLI 319
               L+
Sbjct: 353 YGDTLV 358


>gi|170759542|ref|YP_001787275.1| hypothetical protein CLK_1337 [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406531|gb|ACA54942.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 598

 Score = 39.2 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/113 (12%), Positives = 31/113 (27%), Gaps = 3/113 (2%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS---ML 135
           K AI   RG  KTT+    +   +          +              + K  +    +
Sbjct: 113 KVAIIEPRGFAKTTIFDMAVSVWLHCYEKSLFTLLGAKTDSDATQFLDSIKKVFNDNKKI 172

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
                  +    +  +G    +    +   +  Y  T  + +  R + + G  
Sbjct: 173 IKCFGKLINIKVIKSNGERYTVNSNEVEFTNGTYIKTVGSGTSVRGNNWGGIR 225


>gi|320588535|gb|EFX01003.1| DNA replication helicase [Grosmannia clavigera kw1407]
          Length = 1602

 Score = 39.2 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 40/134 (29%), Gaps = 21/134 (15%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA----------------EVSK 130
            G GKTT  A ++      R G S++  + + T + N L                  E+S 
Sbjct: 1088 GTGKTTTIAHII--RALVRQGKSVLLASYTHTAVDNILLKLKPGSSAEKVGKVDHSEISI 1145

Query: 131  WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
                 P +   E++  ++       +   +++        +   T            H  
Sbjct: 1146 LRLGAPAKVHPEVRDFAVLAEAPATQTSFEAIRRAWHDSPVVATTCLGIGH---ALFHER 1202

Query: 191  HGMAVFNDEASGTP 204
                   DEAS   
Sbjct: 1203 TFDYCIVDEASQIT 1216


>gi|134298866|ref|YP_001112362.1| metal dependent phosphohydrolase [Desulfotomaculum reducens MI-1]
 gi|134051566|gb|ABO49537.1| CRISPR-associated helicase, Cas3 family [Desulfotomaculum reducens
           MI-1]
          Length = 731

 Score = 39.2 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/186 (10%), Positives = 45/186 (24%), Gaps = 18/186 (9%)

Query: 60  EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
             +  +C        P +F   +    G GKT  +    L          I  +    + 
Sbjct: 220 YKILANCREKAEC-EPGLFTLTV--PTGGGKTLSSLSFALRHAIRYEKERIFYVIPFTSI 276

Query: 120 LKN--TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY-------- 169
           ++    ++  V    ++L H   F                      + ++++        
Sbjct: 277 IEQNAMVFKRVIGEENVLEHHSNFAYPQEDQWEMENDLADKLAQQKLATENWDMPVIATT 336

Query: 170 -TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI----INKSILGFFTELNPNRFW 224
                 +    +       HN     +  DEA   P         +++      +     
Sbjct: 337 NVQFFESLFAAKSSRCRKIHNLANSVIIIDEAQMIPTGFLKPCLNAVVELVANYHATIVL 396

Query: 225 IMTSNT 230
              +  
Sbjct: 397 CTATQP 402


>gi|309360315|emb|CAP31319.2| hypothetical protein CBG_12327 [Caenorhabditis briggsae AF16]
          Length = 1077

 Score = 39.2 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 50/160 (31%), Gaps = 14/160 (8%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
              Q + +           +N       C+++AGRG GK+     + L         +I 
Sbjct: 270 TACQAKALLRFLDVITEKQSNVT-----CSLTAGRGRGKSAAV-GLSLAGAVAFGYTNIF 323

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ----SLSLHPSGWYAELLEQSMGIDSK 167
             + +   LK  L+  V K L  L ++   + +    +     +      + +      +
Sbjct: 324 VTSPTPENLKT-LFEFVVKGLDALDYQEHTDYELIQSANPEFKNCLVRVQVFREHKQTIQ 382

Query: 168 HYTIT---CRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
            + I    C T   +               +  DEA+  P
Sbjct: 383 VHIIFFLNCNTDIFQYISPTDVEKLGQCELIVIDEAAAIP 422


>gi|291544275|emb|CBL17384.1| Phosphate starvation-inducible protein PhoH, predicted ATPase
           [Ruminococcus sp. 18P13]
          Length = 324

 Score = 39.2 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 51/203 (25%), Gaps = 27/203 (13%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKT L   M +          I+    +             +    L          +
Sbjct: 136 GTGKTYLAVAMAVKAFRAHAVSRIVLTRPA------------VEAGEKLGFLPGDMQDKV 183

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
             +    Y  L    M           +   E  P  ++         +  DEA  T   
Sbjct: 184 DPYLRPLYDALY--EMLGAESVQRNMEKGSIEVAPLAYMRGRTLDEAFIILDEAQNTTPE 241

Query: 207 INKSILGFFTELNPNRFWIMTSN------TRRLNGWFYDIFNIPL--EDWKRYQIDTRTV 258
             K      T L  +   ++T +               +   +    +D   +Q   R V
Sbjct: 242 QIKMF---LTRLGNSSKMVITGDITQIDLPDAKRSGLVEAMKVLRNVDDIAIHQFQERDV 298

Query: 259 EGIDSGFHEGIISRYGLDSDVAR 281
             +     + II+ Y    +  R
Sbjct: 299 --VRHKLVQDIIAAYEKYQNERR 319


>gi|167383584|ref|XP_001736589.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165900952|gb|EDR27163.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 976

 Score = 39.2 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 51/150 (34%), Gaps = 15/150 (10%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q + + ++         N+       +I+AGRG GK+     + +         +I   A
Sbjct: 248 QAKCVVSLFDSLKEKTLNTT-----ISITAGRGRGKSAAL-GLTIACSVALGYSNIFVTA 301

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            S   +K   +    K L +   +   +   +    S +   ++  ++  + +      +
Sbjct: 302 PSPENVKTV-FEFAVKGLEIFGMKEHLDFDVIQTTKSEYGKAVVRVNIHQNHR------Q 354

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
           T     P+       +    +  DEA+  P
Sbjct: 355 TIQYILPN--DTAQLSQAELLVIDEAAAIP 382


>gi|325914238|ref|ZP_08176588.1| hypothetical protein XVE_0455 [Xanthomonas vesicatoria ATCC 35937]
 gi|325539493|gb|EGD11139.1| hypothetical protein XVE_0455 [Xanthomonas vesicatoria ATCC 35937]
          Length = 951

 Score = 39.2 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 55/167 (32%), Gaps = 24/167 (14%)

Query: 60  EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW---LISTRPGMS------- 109
           E    H     N++NP + + A+    G GKTT+ A ++ W        P          
Sbjct: 65  ERFLDHLKKASNDANPGLMRLALKLATGAGKTTVMAMLIAWQTVNAVRHPQSKKFTRGFL 124

Query: 110 -IICIANSETQLKNTLWAEVSKWL---SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
            +      + +L+  L  +   +     ++P     ++    +  + ++A  L + M + 
Sbjct: 125 LVAPGLTIKDRLRVLLPNDADSYYASREIVPRDMLADLDKTKIIITNYHAFKLRERMELS 184

Query: 166 S-KHYTITCRTYSEERPDTFVGPHNTHGM---------AVFNDEASG 202
                 +  RT SE       G      M            NDEA  
Sbjct: 185 KGGRRLLQGRTGSELDTQETEGQMLQRVMPELMGLKNILAINDEAHH 231


>gi|300121423|emb|CBK21803.2| unnamed protein product [Blastocystis hominis]
          Length = 1028

 Score = 39.2 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 46/159 (28%), Gaps = 11/159 (6%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFK-CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
           + + A+   C +    S  T     +++A RG GK+     + +         ++   A 
Sbjct: 266 QVLRALTGLCRTADQASAKTRQTTVSVTASRGRGKSAAL-GLTVAGAIGFGYSNVFVTAP 324

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
           S   ++          +  L    + E     +  S    +          K +    + 
Sbjct: 325 SAENVQT----LFDFAVKGLKALKFAEHTDFEVIYSPREEQAHWVVRVNVFKTHRQVVQF 380

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF 214
                                 DEA+  P  + KS+LG 
Sbjct: 381 VDPAEASKLAQA-----ELCIVDEAAAIPLPLVKSLLGP 414


>gi|270295175|ref|ZP_06201376.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274422|gb|EFA20283.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 283

 Score = 39.2 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 32/259 (12%), Positives = 70/259 (27%), Gaps = 34/259 (13%)

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN----SETQLKN 122
              +     +     + + R  GK++L    M  L      + +  I      +E +   
Sbjct: 23  RKQLKELLGSGINVMLISPRRWGKSSLVKVAMDELTQEDKHIRVCFIDAFSIKTEAEFYR 82

Query: 123 TLWAEVSKWLSMLPHRHWFEMQSL------SLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
               EV    +    +   +++        S+       + L   + ++ +  ++     
Sbjct: 83  IFAREVISCTASTLEKRLEDVKQFLKAVSPSITLKSDPTDTLSFDLKLELEEKSVMEILE 142

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDII-NKSILGFFTELNPNRFWIMT-------- 227
             E+     G H    + V  DE      +   KS+ G        +  +          
Sbjct: 143 LPEKIAAAKGIH----LIVCIDEFQQLALLPGYKSMEGKMRSAWQKQQQVSYCFYGSKRH 198

Query: 228 ---------SNTRRLNGWFYDIFNIPLEDWKRYQID--TRTVEGIDSGFHEGIISRYGLD 276
                    SN     G    +  I  E+W  + ++   RT + I     E +       
Sbjct: 199 MMMDIFNNSSNPFYRFGQVLFLQKIKKEEWVPFIVNAFHRTNKEISEQQAEQLCDIVKCH 258

Query: 277 SDVARIEILGQFPQQEVNN 295
           S   +      +       
Sbjct: 259 SWYLQQLCYFIWSGTSEKV 277


>gi|67465259|ref|XP_648814.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|56465091|gb|EAL43429.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS]
          Length = 978

 Score = 39.2 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 51/150 (34%), Gaps = 15/150 (10%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q + + ++         N+       +I+AGRG GK+     + +         +I   A
Sbjct: 248 QAKCVVSLFDSLKEKTLNTT-----ISITAGRGRGKSAAL-GLTIACSVALGYSNIFVTA 301

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            S   +K   +    K L +   +   +   +    S +   ++  ++  + +      +
Sbjct: 302 PSPENVKTV-FEFAVKGLEIFGMKEHLDFDVVQTTKSEYGKAVVRVNIHQNHR------Q 354

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
           T     P+       +    +  DEA+  P
Sbjct: 355 TIQYILPN--DTAQLSQAELLVIDEAAAIP 382


>gi|300766664|ref|ZP_07076581.1| DNA replication protein [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|300495764|gb|EFK30915.1| DNA replication protein [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
          Length = 261

 Score = 39.2 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 56/203 (27%), Gaps = 13/203 (6%)

Query: 4   LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEF----- 58
            + T ++L+ +  +           + +      W   G PL      + WQ++      
Sbjct: 26  KLPTKEELDHQTIDRANAGVIANRKRYYYRMSV-W-SGGVPLRFS--FNDWQVDKQPNQA 81

Query: 59  -MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
               +               F  A++ G G+GKT+L   +M  L++       +  A   
Sbjct: 82  KARELGNQAFKLARQLETNQFNVALAGGPGVGKTSLALAIMYQLMNAGQTAMFVSTAELL 141

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
             +     A   +   +   +         L    +  E  + +     K      +T  
Sbjct: 142 RLVNEKYEAPDVRQRLLYILKG--MQNVDVLVLDDFGTEGGKPTEKGFYKPVHKDLQTLM 199

Query: 178 EERPD-TFVGPHNTHGMAVFNDE 199
            +  +      HN          
Sbjct: 200 YQVANARCDFDHNEVKHITIITT 222


>gi|242768912|ref|XP_002341663.1| DNA replication helicase Dna2, putative [Talaromyces stipitatus ATCC
            10500]
 gi|218724859|gb|EED24276.1| DNA replication helicase Dna2, putative [Talaromyces stipitatus ATCC
            10500]
          Length = 1657

 Score = 39.2 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 37/118 (31%), Gaps = 3/118 (2%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKTT  A ++        G S++  + + T + N L    +  +  L      ++   
Sbjct: 1143 GTGKTTTIAHII--RALVSQGKSVLLTSYTHTAVDNILLKIKNDNIRTLRLGAVAKVHPE 1200

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                    A   ++S+    + Y  +    +          +         DEAS   
Sbjct: 1201 VQQFVDLAAIP-KKSIEELKESYERSEIVATTCLGINHPIFNERIFDYCIVDEASQIT 1257


>gi|167760904|ref|ZP_02433031.1| hypothetical protein CLOSCI_03292 [Clostridium scindens ATCC 35704]
 gi|167661507|gb|EDS05637.1| hypothetical protein CLOSCI_03292 [Clostridium scindens ATCC 35704]
          Length = 793

 Score = 39.2 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/186 (10%), Positives = 48/186 (25%), Gaps = 21/186 (11%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST-RPGMS 109
           P  +Q   +        +  N       +  ++   G GKT   A+ +++ +   R    
Sbjct: 166 PRYYQCNAINRAVEAVANGQN-------RLLLTMATGTGKTY-TAFQIVYRLWKSRTKKR 217

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
           I+ +A+    + + +  +   + +   +R                    +     +    
Sbjct: 218 ILFLADRNVLVDDPMRKDFKFFNADSNNR------------KMTKIRDKKVDKAYEVYFA 265

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
                T      DT+          +  DE        + +               MT+ 
Sbjct: 266 IYQGVTGQIGFADTYKEFSPDFFDLIIVDECHRGSAKEDSAWRKILEYFKNATQIGMTAT 325

Query: 230 TRRLNG 235
            +    
Sbjct: 326 PKETKD 331


>gi|320590134|gb|EFX02577.1| dead box helicase [Grosmannia clavigera kw1407]
          Length = 1329

 Score = 39.2 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 71/246 (28%), Gaps = 19/246 (7%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              ++   G+GKT + A ++L          ++ +A ++          VS+ +      
Sbjct: 204 NTLVALPTGLGKTFIAATVILNFYRWTKDAKMVFVAPTK--------PLVSQQVEACFTI 255

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                   +L  +G  A  L  +     + + +T +T   +    +  P     + +  D
Sbjct: 256 AGIPRSETTL-LTGDTAPALRAAEWASKRLFFMTPQTLQNDLSKGYADP--KSIVLLVID 312

Query: 199 EASGTP-DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257
           EA     D     ++GF      +   +  + T               +      +    
Sbjct: 313 EAHRATGDYAYVKVIGFIRRFTKSFRVLALTATPGST------VEGVQDVINNLGVSHVE 366

Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILGQFP-QQEVNNFIPHNYIEEAMSREAIDDLYA 316
           +   +S      +    ++  V    +  +F  +       P     +        D  +
Sbjct: 367 IRTEESLDIRQYVHGRDVERFVLDPSVEIKFVQEHLSKALKPFCEKLDQQKIWYGRDPMS 426

Query: 317 PLIMGC 322
             + G 
Sbjct: 427 LTMFGL 432


>gi|19112388|ref|NP_595596.1| mitochondrial ATP-dependent RNA helicase Mss116 (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|74581875|sp|O13622|MS116_SCHPO RecName: Full=ATP-dependent RNA helicase mss116, mitochondrial;
           Flags: Precursor
 gi|2257514|dbj|BAA21410.1| ATP-DEPENDENT RNA HELICASE MSS116 PRECURSOR [Schizosaccharomyces
           pombe]
 gi|13810214|emb|CAC37365.1| mitochondrial ATP-dependent RNA helicase Mss116 (predicted)
           [Schizosaccharomyces pombe]
          Length = 535

 Score = 39.2 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/216 (11%), Positives = 55/216 (25%), Gaps = 6/216 (2%)

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
            E +       +N   P      + A  G GKT   A++++       G   +  +   +
Sbjct: 58  FEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKT--LAFLLVAFKDVLKGKPRLNSSKIHS 115

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
            + +       +         +     +S    G      E ++   + +  I      E
Sbjct: 116 VILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLE 175

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINK----SILGFFTELNPNRFWIMTSNTRRLN 234
           +         +    +   DEA    D+       +I    T     +     +   +++
Sbjct: 176 DHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFSATMPPKVS 235

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGII 270
             F  I     +       +          F     
Sbjct: 236 NVFRGILGTDFKLINCLDPNEPPTHERVPQFVIETK 271


>gi|117921774|ref|YP_870966.1| ATP-dependent RNA helicase SrmB [Shewanella sp. ANA-3]
 gi|117614106|gb|ABK49560.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 419

 Score = 39.2 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/220 (10%), Positives = 46/220 (20%), Gaps = 20/220 (9%)

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMSIICIANSET 118
                               A  G GKT       L  +   P        I+ +  +  
Sbjct: 25  TTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQHLIDFPRRYSGHARILILTPT-- 82

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
                   E++  +      H    Q L++           Q   +      +       
Sbjct: 83  -------RELASQIHRYAC-HLATGQGLNIAIITGGVPYGPQEEALKDNIDILVATPGRL 134

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWF 237
                           +  DEA    D+   +++     E    +  ++ S T   +G  
Sbjct: 135 MEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQNMLFSATLEGSGVI 194

Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277
                +  +  +            +       I       
Sbjct: 195 RFAREVLNDPIEID----VDAPRKEKAKIHQWIHLADDKE 230


>gi|327261478|ref|XP_003215557.1| PREDICTED: activating signal cointegrator 1 complex subunit 3-like
            [Anolis carolinensis]
          Length = 2207

 Score = 39.2 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/176 (10%), Positives = 45/176 (25%), Gaps = 23/176 (13%)

Query: 45   LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            L  F+  +  Q +    +                   + A  G GKT + A + ++ I  
Sbjct: 1328 LYKFTHFNPIQTQIFHTLYHTD-----------CNVLLGAPTGSGKT-VAAELAIFRIFN 1375

Query: 105  RPG-MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
                   + IA  +  ++  +     +    L  R       ++       +      + 
Sbjct: 1376 HYPTSKAVYIAPLKALVREIIEDWKIRIEEKLGKRVVELTGDVTPDMR---SIAQADLIV 1432

Query: 164  IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
               + +    R++                  +  DE     D     +    +  N
Sbjct: 1433 TTPEKWDGVSRSWQNRSYV-------QKVSILIIDEIHLLGDERGPVLEVIVSRTN 1481


>gi|91776957|ref|YP_546713.1| hypothetical protein Mfla_2607 [Methylobacillus flagellatus KT]
 gi|91710944|gb|ABE50872.1| protein of unknown function DUF450 [Methylobacillus flagellatus KT]
          Length = 1022

 Score = 39.2 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 45/182 (24%), Gaps = 12/182 (6%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP--GM 108
           P   QL+ +  +  H          +     I    G GK+   AW+   L S       
Sbjct: 287 PRYHQLDAVRKMVAHARE-----QGSGRNYLIQHSAGSGKSNSIAWLAHRLASLHDAQDQ 341

Query: 109 SI---ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
            +   + +      L   L   + ++          +  +  L  +      +  +    
Sbjct: 342 KVFHSVVVVTDRRVLDQQLQNTIYQFEHKTGVVEKIDEDTQQLARALSQGTPIIITTIQK 401

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNRFW 224
               +    T   +     +        AV  DEA S        ++ G           
Sbjct: 402 FPFISQALSTLERKGAGVKIDTAGRRF-AVIVDEAHSSQSGETATALRGMLNRDGIEAAI 460

Query: 225 IM 226
             
Sbjct: 461 AA 462


>gi|50086398|ref|YP_047908.1| putative type I restriction-modification system (HsdR)
           [Acinetobacter sp. ADP1]
 gi|49532374|emb|CAG70086.1| putative type I restriction-modification system (HsdR)
           [Acinetobacter sp. ADP1]
          Length = 1020

 Score = 39.2 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 55/168 (32%), Gaps = 11/168 (6%)

Query: 39  GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98
           G +    E    P   QL+ +  +  H  +N +  N  I   A     G GK+   AW+ 
Sbjct: 270 GFRYIEKETMIFPRYHQLDAVRKLTKHSKANGSGHNYLIQHSA-----GSGKSNTIAWLA 324

Query: 99  --LWLISTRPGMSI---ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
             L  +       I   I +      L   L   ++++          +  +L L  +  
Sbjct: 325 HQLASMHNADDKKIFNSIIVITDRIVLDRQLQETIAQFEHKDGVVQKIDENTLQLTNALA 384

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
               +  +      +   + RT +++     +     +  AV  DEA 
Sbjct: 385 SNVPIIITTIQKFPYIMQSIRTQAKKGIKVDLSTEGKNF-AVIVDEAH 431


>gi|332975817|gb|EGK12696.1| type I restriction-modification system R subunit [Psychrobacter sp.
           1501(2011)]
          Length = 811

 Score = 39.2 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/190 (12%), Positives = 47/190 (24%), Gaps = 26/190 (13%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST- 104
                P  +QL+ +           N       +  +    G GKT   A+ ++W +   
Sbjct: 163 GSGKSPRYYQLQAINKTIEAIARRQN-------RILLVMATGTGKTY-TAFQIIWRLWKA 214

Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
           R    I+ +A+     +N L  +                       +    E        
Sbjct: 215 REKKRILFLAD-----RNILVDQTRV------------NDFQPFGTAMTKIEGRTVDPAF 257

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
           +         T  EE    F          +  DE        + +        N     
Sbjct: 258 EIHLGLYQALTGPEEHQKAFKQVAPDFFDLIVIDECHRGSAAEDSAWREILEYFNSATQV 317

Query: 225 IMTSNTRRLN 234
            +T+  +  +
Sbjct: 318 GLTATPKETD 327


>gi|261855436|ref|YP_003262719.1| CRISPR-associated helicase Cas3 [Halothiobacillus neapolitanus c2]
 gi|261835905|gb|ACX95672.1| CRISPR-associated helicase Cas3 [Halothiobacillus neapolitanus c2]
          Length = 753

 Score = 39.2 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 43/189 (22%), Gaps = 8/189 (4%)

Query: 68  SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127
              ++  P +F   +    G GKT  +    L          II +    T +       
Sbjct: 248 REKSHEPPGLFSLTV--PTGGGKTLSSMAFALEHAKRNNKRRIIYVIP-YTSIIEQTADI 304

Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ-SMGIDSKHYTITCRTYSEERPDTFVG 186
                      H    +  +   +       E     I          +    +      
Sbjct: 305 FRDIFGEAVIEHHSNAEVDANKENSRSRLACENWDASIVVTTNVQFFESLFAAKTSRCRK 364

Query: 187 PHNTHGMAVFNDEASGTPDIINKSI---LGFFTELNPNRFWIMTSN-TRRLNGWFYDIFN 242
            HN     V  DEA   P    + I   L   T        + T+         ++D  N
Sbjct: 365 LHNIVDSVVVMDEAQLIPAEFLQPILDVLNLLTLHYGVTVVLSTATQPALATREYFDAKN 424

Query: 243 IPLEDWKRY 251
                    
Sbjct: 425 NMRGLENVR 433


>gi|149371676|ref|ZP_01891092.1| RNA helicase [unidentified eubacterium SCB49]
 gi|149355303|gb|EDM43863.1| RNA helicase [unidentified eubacterium SCB49]
          Length = 419

 Score = 39.2 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/159 (11%), Positives = 40/159 (25%), Gaps = 27/159 (16%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
            ++ P   Q + +  +                    SA  G GKT   +  ML +I+ +P
Sbjct: 20  GYTTPSPIQAKAIPKILEGKD------------VLASAQTGTGKTAGFSLPMLHIITKQP 67

Query: 107 -----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
                 +  + +  +       L  E+  + +            +             Q 
Sbjct: 68  FQRHRPVKALIVTPTRELAAQIL-KEIKDYSA---------FTDVRSTVIFGGVNANPQI 117

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
             +      +           +    +      +  DEA
Sbjct: 118 RALKQGTDILVATPGRLLDLHSQGVFNMKKVEFLVLDEA 156


>gi|149237833|ref|XP_001524793.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152112298|sp|A5E2I8|SPB4_LODEL RecName: Full=ATP-dependent rRNA helicase SPB4
 gi|146451390|gb|EDK45646.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 637

 Score = 39.2 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 57/208 (27%), Gaps = 26/208 (12%)

Query: 52  HRWQLEFMEAV----DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107
             W  + + ++         ++            + A  G GKT   A  +L  +S R  
Sbjct: 18  EPWLKDAIRSLNYPTMTPVQASTIPLLSGNKDVIVEAVTGSGKTLAFAIPVLQKVSKRLY 77

Query: 108 MS----------------IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151
                              I +A +    K        K L +LP    +E +  +    
Sbjct: 78  QVPEGEEKPEPVKRGHMLAIVMAPTRELAKQI-QMVFDKVLELLPEEDSYEPRIKTQLLV 136

Query: 152 GWYAELLEQSMGI-DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS 210
           G+   + E      +++   +           +      +    V  DEA    D+  ++
Sbjct: 137 GFLGNVREDLDSYQENRPQILIATPGRLLDFMSLQIVKTSSLEIVILDEADKLLDMSFET 196

Query: 211 ----ILGFFTELNPNRFWIMTSNTRRLN 234
               IL    +      +  T +     
Sbjct: 197 DVIKILKMLPKQRRTGLFSATISAAGDT 224


>gi|297581650|ref|ZP_06943572.1| type III restriction enzyme [Vibrio cholerae RC385]
 gi|297534057|gb|EFH72896.1| type III restriction enzyme [Vibrio cholerae RC385]
          Length = 1005

 Score = 39.2 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 54/185 (29%), Gaps = 28/185 (15%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P   Q + +E +       V       F+  + A  G GKT ++A+     I  +P  + 
Sbjct: 320 PFPHQSDILEQLA------VERCVHQRFRNLVVAATGTGKTLISAFDFARFIKAKPQANF 373

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + +A+ E         E+ K                 L   G   E           +  
Sbjct: 374 LFVAHRE---------EILKQARAAYRGVLRNGAFGELWVGGHTPE----------HYRQ 414

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
           +     +     + +     +   +  DE         +++       +P     +T+  
Sbjct: 415 LFVSIQTLNNQLSQLNLTTDYYDYIVIDEVHHIAAASYRAV---LEHFSPAILLGLTATP 471

Query: 231 RRLNG 235
            R +G
Sbjct: 472 ERHDG 476


>gi|116513197|ref|YP_812104.1| hypothetical protein LACR_2573 [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116108851|gb|ABJ73991.1| hypothetical protein LACR_2573 [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 906

 Score = 39.2 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 46/161 (28%), Gaps = 16/161 (9%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q E +            +    +F  A     G GKT L A ++L+L       + +
Sbjct: 49  RYYQDEAVRNYHYTQTRIKPSPQHVLFNMA----TGSGKTDLMAGLILYLYQEYDYKNFL 104

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
              N+ +     L       ++    ++ F+ +           E+             I
Sbjct: 105 FTVNTNS----VLMKTKDNLVNQNSDKYLFQDKIEIDGRQISILEVERFPRVQQDNTIYI 160

Query: 172 TCRTYSEERPDTFVGPHN--------THGMAVFNDEASGTP 204
              +  +   D FV   N           + V  DEA    
Sbjct: 161 KLSSVQKVSDDLFVVKENAMGLADYERQPVVVLADEAHHYS 201


>gi|94314203|ref|YP_587412.1| 23S rRNA ATP-dependent RNA helicase [Cupriavidus metallidurans
           CH34]
 gi|93358055|gb|ABF12143.1| ATP-dependent RNA helicase, specific for 23S rRNA [Cupriavidus
           metallidurans CH34]
          Length = 467

 Score = 39.2 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/182 (9%), Positives = 38/182 (20%), Gaps = 10/182 (5%)

Query: 87  GIGKTTLNAWMMLWLISTRP-GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
           G GKT   A  +L  +  RP  +  + +  +                +    +       
Sbjct: 54  GSGKTAAFALSLLHRLDPRPLDVQALVLCPTRELADQVTQEIRRLARAEDNVKVLTLSGG 113

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
             + P                  + +                +      +  DEA    D
Sbjct: 114 TPIRPQVESLVH---------GAHVVVGTPGRIIDHLDRGSLNIDAINTLVLDEADRMLD 164

Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265
           +     + F     P     +  +                +       +      I   F
Sbjct: 165 MGFHDDIAFIASHAPKDRQTLLFSATYPAAIDKLAHRFLRQPKTVKVEEAHDAATITQRF 224

Query: 266 HE 267
           +E
Sbjct: 225 YE 226


>gi|322834137|ref|YP_004214164.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
 gi|321169338|gb|ADW75037.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
          Length = 442

 Score = 39.2 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/190 (12%), Positives = 45/190 (23%), Gaps = 27/190 (14%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
            +S+P   Q E +                       SA  G GKT       L  +   P
Sbjct: 23  GYSRPTVIQAEAI------------PPAMDGRDVLGSAPTGTGKTAAFLLPALQHLLDFP 70

Query: 107 -----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
                   I+ +  +         AE ++ L+         +     + +        Q 
Sbjct: 71  RKKSGPPRILILTPTRELAMQV--AEQARELAKHTELDIATITGGVAYMNHAEVFSENQD 128

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221
           +        +   T    +              +  DEA    D+     +   +     
Sbjct: 129 I--------VVATTGRLLQYIKEENFDCRAIETLILDEADRMLDMGFAQDIETISAEARW 180

Query: 222 RFWIMTSNTR 231
           R   +  +  
Sbjct: 181 RKQTLLFSAT 190


>gi|237807952|ref|YP_002892392.1| type I site-specific deoxyribonuclease, HsdR family [Tolumonas
           auensis DSM 9187]
 gi|237500213|gb|ACQ92806.1| type I site-specific deoxyribonuclease, HsdR family [Tolumonas
           auensis DSM 9187]
          Length = 1030

 Score = 39.2 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/118 (10%), Positives = 34/118 (28%), Gaps = 2/118 (1%)

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICI--ANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           +G GK+    W+  W+        ++ +       +    ++  V + +           
Sbjct: 278 QGSGKSLTMVWLAKWIRENVKDSRVLIVTDRTELDEQIEKVFFGVDEEIYRTKSGADLIA 337

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
              + +P    + + +     +S          +E +            + +F DE  
Sbjct: 338 TLNTANPWLICSLVHKFGRQSESDDEGAADEFIAELKKSLPKDFRAKGDLFIFVDECH 395


>gi|159125465|gb|EDP50582.1| DNA replication helicase Dna2, putative [Aspergillus fumigatus A1163]
          Length = 1657

 Score = 39.2 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 35/120 (29%), Gaps = 7/120 (5%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM--Q 144
            G GKTT  A ++        G S++  + + T + N L         +L      ++  +
Sbjct: 1162 GTGKTTTIAHII--RALVAQGKSVLLTSYTHTAVDNILLKIRDDNFRILRIGATAKVHTE 1219

Query: 145  SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                       +   + +    +   +   T      + F             DEAS   
Sbjct: 1220 VQQFVDLAAVPKSTVEELKASYEESQVVATTCLGVNHNIFNR---RVFDYCIVDEASQIT 1276


>gi|146323861|ref|XP_751610.2| DNA replication helicase Dna2 [Aspergillus fumigatus Af293]
 gi|129557499|gb|EAL89572.2| DNA replication helicase Dna2, putative [Aspergillus fumigatus Af293]
          Length = 1657

 Score = 39.2 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 35/120 (29%), Gaps = 7/120 (5%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM--Q 144
            G GKTT  A ++        G S++  + + T + N L         +L      ++  +
Sbjct: 1162 GTGKTTTIAHII--RALVAQGKSVLLTSYTHTAVDNILLKIRDDNFRILRIGATAKVHTE 1219

Query: 145  SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                       +   + +    +   +   T      + F             DEAS   
Sbjct: 1220 VQQFVDLAAVPKSTVEELKASYEESQVVATTCLGVNHNIFNR---RVFDYCIVDEASQIT 1276


>gi|326430023|gb|EGD75593.1| snf family helicase [Salpingoeca sp. ATCC 50818]
          Length = 3098

 Score = 39.2 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/246 (10%), Positives = 55/246 (22%), Gaps = 31/246 (12%)

Query: 87   GIGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
            G+GKT     ++  L  TR    P + ++  +     +      E+ KW    P      
Sbjct: 1083 GLGKTIQTIALLAHLAVTRNNWGPHLIVVPTS-----VMVNWEMELKKW---CPAFKVLN 1134

Query: 143  MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
                            +             C T  +                +  DEA  
Sbjct: 1135 YHGTIKERREKRVGWTKPD-------QFHVCITSYKLAVQDAHIFKRKKWKYLILDEAHH 1187

Query: 203  TPDIINKSILGFFTELNPNRFWIMTSNT--RRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
              +                R  ++T       L   +  +  +    ++ +Q        
Sbjct: 1188 IKN-FESKRWQTLLRFTSRRRLLLTGTPLQNDLMELWSLLHFLMPRVFQSHQQFREWFGN 1246

Query: 261  IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIM 320
                  E   +    D          +   +      P          E         ++
Sbjct: 1247 PVREMVESTRAAKQRDK---------ERVSRLHKLLRPFILRRLKADVELQMPKKYEHVI 1297

Query: 321  GCDIAG 326
             CD++ 
Sbjct: 1298 TCDLSR 1303


>gi|292653988|ref|YP_003533886.1| DNA repair helicase Rad25 [Haloferax volcanii DS2]
 gi|291369858|gb|ADE02086.1| DNA repair helicase Rad25 [Haloferax volcanii DS2]
          Length = 466

 Score = 39.2 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/251 (10%), Positives = 61/251 (24%), Gaps = 44/251 (17%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
                    +P  +Q   ++A   H               ++    G GKT L       
Sbjct: 75  LDLTPALHIEPRDYQQAALDAWTNHNRRG-----------SVVLPTGSGKTFL------- 116

Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
                 G+  I  A     +       +++W + L +               +  +L E 
Sbjct: 117 ------GLQAIADAGVGALVVTPTIDLMNQWHATLTN--------------AFGDQLPEP 156

Query: 161 SMGIDSKHYTITCRTYSE-ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
              +    + +T  T +  +    +V  +      +  DE    P    + I        
Sbjct: 157 IGVLGGGSHDVTAITVTTYDSAYRYVNEYGDQFGLLVVDEEHHLPPPTYRQIPEMTIAPY 216

Query: 220 PNRFWIMTSNTRRLNGWFYD-----IFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYG 274
                         +    D     ++   ++D     +       +           Y 
Sbjct: 217 RLGLTATYERPDGKHELLEDLLGPVVYREHVDDLAGEYLSEYETIHMSVDLTADERETYD 276

Query: 275 LDSDVARIEIL 285
            +  + R  + 
Sbjct: 277 EEYKLYRDYVD 287


>gi|260556279|ref|ZP_05828498.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter baumannii ATCC
           19606]
 gi|260410334|gb|EEX03633.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter baumannii ATCC
           19606]
          Length = 583

 Score = 39.2 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/160 (12%), Positives = 39/160 (24%), Gaps = 16/160 (10%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
            E ++ +                   I+ G G GKT   A ++  L    P + +   A 
Sbjct: 118 EEHLDLLTDPHQQAALQMVTRQSLSIITGGPGTGKTYTLARIIAVLSQAIPHIRVAMAAP 177

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
           +    +                     +Q+    P    + L+   +   S         
Sbjct: 178 TGKAAQRM----------------QEALQNSFNDPKLLESGLMSDELRNQSTQTIHRLLG 221

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
               +   F          +  DEAS     +   +    
Sbjct: 222 MGHSQTPRFNQKQPLPYDVIVVDEASMLDLNLATVLFEAV 261


>gi|209527839|ref|ZP_03276330.1| PhoH family protein [Arthrospira maxima CS-328]
 gi|209491749|gb|EDZ92113.1| PhoH family protein [Arthrospira maxima CS-328]
          Length = 317

 Score = 39.2 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 48/185 (25%), Gaps = 25/185 (13%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS--------AGRGIGKTTLNAWMMLWLIS 103
              Q + +                  +  AI            G GKT L A + L  + 
Sbjct: 94  RELQQDVLARTRRGQDIRAKTFRQRQYIQAIRTHDLTFCIGPAGTGKTYLAAIIALQALL 153

Query: 104 TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
           +     +I    +             +    L        Q ++ +    Y  +    + 
Sbjct: 154 SDQYERLILTRPA------------VEAGERLGFLPGDLQQKVNPYLRPLYDAIY--ELV 199

Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
              K   +  R   E  P  ++     +   +  DEA  T     K +    T L     
Sbjct: 200 DPEKAANLMERGVIEVAPIAYMRGRTLNNSFIILDEAQNTTPGQMKMV---LTRLGSRSR 256

Query: 224 WIMTS 228
            ++T 
Sbjct: 257 MVVTG 261


>gi|300708923|ref|XP_002996632.1| hypothetical protein NCER_100260 [Nosema ceranae BRL01]
 gi|239605948|gb|EEQ82961.1| hypothetical protein NCER_100260 [Nosema ceranae BRL01]
          Length = 490

 Score = 39.2 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 37/136 (27%), Gaps = 6/136 (4%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE---TQLKNTLWAEVSKWLSMLP 136
               A  G GKT      ++  I   P    + I        Q+K+       K      
Sbjct: 65  LICKAPTGSGKTLCYIIPVIQKILKNPNSKAVIICPVRELCDQIKSVCLELTKKLFVNKK 124

Query: 137 HRH---WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
           + +   ++  ++ +   S       +Q +   S    I                +  +  
Sbjct: 125 NENCDLYYNPKTANQPISVMTIRSDKQELVDYSDANIIIATPGRLIFNLEKKFINFDNLD 184

Query: 194 AVFNDEASGTPDIINK 209
            +  DEA    D   K
Sbjct: 185 TIVFDEADKLYDSTFK 200


>gi|206603906|gb|EDZ40386.1| Exodeoxyribonuclease V, alpha subunit [Leptospirillum sp. Group II
           '5-way CG']
          Length = 575

 Score = 39.2 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 71/265 (26%), Gaps = 27/265 (10%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFK--CAISAGRGIGKTTLNAWMMLWLIST 104
              +P     E +                 +F+    ++ G G GKT  +A ++      
Sbjct: 140 GAREPDARDQEILRLASGGVEDRRRLLEGALFRPFFLLTGGPGTGKTYTSAEILKVWKIL 199

Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
           RP   ++    +    +   + E      +        +       S      L Q + +
Sbjct: 200 RPEAHLVVATPTGKAARR--FREALSLPEVDVLTLHRLLGISPGGASPGEDRPLVQDLVL 257

Query: 165 DSKHYTIT----CRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELN 219
             +   +      R +    P+T V            D+ S   P  +   +    +   
Sbjct: 258 VDECSMVDLSLMARLFRALSPETSVILVGDP------DQLSSVGPGSVFGDLALAMSVEQ 311

Query: 220 PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279
             R  I  S       +     N   + W  +      V   D+G    I++       +
Sbjct: 312 KTRPEISRS-------FQVLTRNYRQDSWDDFGRLAEGVRQGDAGTVLEILASGEKSGPI 364

Query: 280 ARIEILGQFPQQEVNNFIPHNYIEE 304
             IE     P+      I    IE 
Sbjct: 365 RWIE-----PRTGAIREIGKTLIEA 384


>gi|124514960|gb|EAY56471.1| Exodeoxyribonuclease V, alpha subunit [Leptospirillum rubarum]
          Length = 575

 Score = 39.2 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 71/265 (26%), Gaps = 27/265 (10%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFK--CAISAGRGIGKTTLNAWMMLWLIST 104
              +P     E +                 +F+    ++ G G GKT  +A ++      
Sbjct: 140 GAREPDARDQEILRLASGGVEDRRRLLEGALFRPFFLLTGGPGTGKTYTSAEILKVWKIL 199

Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
           RP   ++    +    +   + E      +        +       S      L Q + +
Sbjct: 200 RPEAHLVVATPTGKAARR--FREALSLPEVDVLTLHRLLGISPGGASPGEDRPLVQDLVL 257

Query: 165 DSKHYTIT----CRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELN 219
             +   +      R +    P+T V            D+ S   P  +   +    +   
Sbjct: 258 VDECSMVDLSLMARLFRALSPETSVILVGDP------DQLSSVGPGSVFGDLALAMSVEQ 311

Query: 220 PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279
             R  I  S       +     N   + W  +      V   D+G    I++       +
Sbjct: 312 KTRPEISRS-------FQVLTRNYRQDSWDDFGRLAEGVRQGDAGTVLEILASGEKSGPI 364

Query: 280 ARIEILGQFPQQEVNNFIPHNYIEE 304
             IE     P+      I    IE 
Sbjct: 365 RWIE-----PRTGAIREIGKTLIEA 384


>gi|73953279|ref|XP_546133.2| PREDICTED: similar to DNA2-like homolog (DNA replication
           helicase-like homolog) [Canis familiaris]
          Length = 1046

 Score = 39.2 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/198 (12%), Positives = 56/198 (28%), Gaps = 22/198 (11%)

Query: 13  QELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNN 72
           Q+L ++++       F +++    P+  K          ++ Q + M+ V          
Sbjct: 589 QKLRDLIIDFREP-QFISYLSSVLPYDAKDTVACILKGLNKPQRQAMKKV---------- 637

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
                +   +    G GKTT    ++  L +   G S++  + + + + N L       +
Sbjct: 638 LLSKDYTLIVGMP-GTGKTTTICTLVRILYTC--GFSVLLTSYTHSAVDNILLKLAKFKI 694

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQS-----MGIDSKHYTITCRTYSEERPDTFVGP 187
             L      ++       +       +       +      + I   T            
Sbjct: 695 GFLRLGRTQKVHQDIQKFTEEEICRSKPIKSLALLEELYNSHRIVATTCMGINHP---IF 751

Query: 188 HNTHGMAVFNDEASGTPD 205
                     DEAS    
Sbjct: 752 SRKTFDFCIVDEASQISQ 769


>gi|307591364|ref|YP_003900163.1| type III restriction protein res subunit [Cyanothece sp. PCC 7822]
 gi|306986218|gb|ADN18097.1| type III restriction protein res subunit [Cyanothece sp. PCC 7822]
          Length = 507

 Score = 39.2 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 57/177 (32%), Gaps = 18/177 (10%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q + +E    H    ++       +  I AG G GKT + + ++   +S   G  +I
Sbjct: 4   RPYQTKVIEE--THFKRKISQ------RILIIAGTGAGKTVIGSRLISDFVSL--GQKVI 53

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            + +     ++ L  +  K L  +   +     S   + S        Q++    K +  
Sbjct: 54  FLVH-----RDILIKQTLKKLEGINLPYGIIAGSYPENLSQQVQIASIQTLSRRGKQWLQ 108

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
               ++      F   H T+      +     P   N++I+G               
Sbjct: 109 AEFPFTVAI---FDESHLTNWFNFSLELCPKLPKKNNQTIIGLTATPWRRLKSQSMG 162


>gi|322419455|ref|YP_004198678.1| PhoH family protein [Geobacter sp. M18]
 gi|320125842|gb|ADW13402.1| PhoH family protein [Geobacter sp. M18]
          Length = 439

 Score = 39.2 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 44/154 (28%), Gaps = 10/154 (6%)

Query: 87  GIGKTTLN-AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
           G GKT L  A  +           ++         ++ L          L    W +   
Sbjct: 255 GTGKTLLAIAAGLQKTAEENVYNRLLVSRPVFPMGRD-LGFLPGDIEEKL--SPWMQPIF 311

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
            ++       E  +        +  +      E  P T++   +     +  DEA     
Sbjct: 312 DNVELLLSGHEGEK---RHSKGYKELMAMGILEIEPLTYIRGRSIPNQYMIVDEAQNLTP 368

Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239
              K+I    T        I+T +  +++  + D
Sbjct: 369 HEIKTI---VTRAGEGTKIILTGDPYQIDNPYVD 399


>gi|225626370|ref|YP_002727866.1| terminase large subunit [Pseudomonas phage phikF77]
 gi|225594879|emb|CAX63164.1| terminase large subunit [Pseudomonas phage phikF77]
          Length = 601

 Score = 39.2 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/260 (11%), Positives = 71/260 (27%), Gaps = 28/260 (10%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +      + N       K  ++A RG  K+T+    ++W I+  P    + ++ S  + 
Sbjct: 41  DIADFMQDSPN-------KAMVAAQRGEAKSTIACIYVVWCIAQNPATRAMLVSGSGDKA 93

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLS-LHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
           +             L  +       L+ L P     +    +    +       ++ S  
Sbjct: 94  EEN---------GQLITKLIMHWDLLAYLRPEARMGDRTSATSFDVNWALKGVEKSASIN 144

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT-------SNTRR 232
                          +  D+   T + +  +     T  +     I T          + 
Sbjct: 145 CIGITAALQGYRADILIPDDIETTKNGLTATERAKLTRQSQEFTSICTHGKILYLGTPQS 204

Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292
               +     +P   +       R     +   +   ++   +D  +AR+E  G  P+  
Sbjct: 205 RESIYN---GLPARGFLMRIWPGRFPTLDEQKRYGEWLAPSIVD-RIARLEEKGHNPRTG 260

Query: 293 VNNFIPHNYIEEAMSREAID 312
                   +  +       D
Sbjct: 261 KGLDGTRGWAADPQRYNEED 280


>gi|257440685|ref|ZP_05616440.1| conserved hypothetical protein [Faecalibacterium prausnitzii
           A2-165]
 gi|257196858|gb|EEU95142.1| conserved hypothetical protein [Faecalibacterium prausnitzii
           A2-165]
          Length = 721

 Score = 39.2 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 36/151 (23%), Gaps = 19/151 (12%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSE------TQLKNTLWAEVS----KWLSMLP 136
           G GKT + A    +L +  P   I    N+        QL NT + E +     W ++  
Sbjct: 215 GSGKTVVLALKAAYLHAQHPEWKIAVTFNTRSLKGQLRQLINTFYIEQTSEEPDWDNLHI 274

Query: 137 HRHWFEMQSLSLHPSGWY-------AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189
              W            +          L   S                +   +       
Sbjct: 275 LHAWGAPGGGERTGMYYIFCGTNNLEYLDFLSAKNRFGSTDPFGVACRKALEEATDP--R 332

Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNP 220
               AV  DEA        K       E   
Sbjct: 333 PMYDAVLVDEAQDFSPAFLKLCYEMLREPKR 363


>gi|293610156|ref|ZP_06692457.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827388|gb|EFF85752.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 587

 Score = 39.2 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 38/148 (25%), Gaps = 16/148 (10%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
           ++++ +                   I+ G G GKT   A ++  L    P + +   A +
Sbjct: 123 DYLDLLTDPHQQAALQMVARQSLSIITGGPGTGKTYTLARIIAVLSQAIPHIRVAMAAPT 182

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
               +                     +Q+    P    + L+ + +              
Sbjct: 183 GKAAQRM----------------QEALQNSFNDPKLLESGLVSEELRNQGTQTIHRLLGM 226

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTP 204
              +   F          +  DEAS   
Sbjct: 227 GHSQTPRFNQKQPLPYDVIVVDEASMLD 254


>gi|210076288|ref|XP_504727.2| YALI0E33377p [Yarrowia lipolytica]
 gi|199426994|emb|CAG80331.2| YALI0E33377p [Yarrowia lipolytica]
          Length = 1390

 Score = 39.2 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 35/123 (28%), Gaps = 9/123 (7%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKTT  A +++ L+    G +++  + + + + N L   +                + 
Sbjct: 958  GTGKTTTIAEIIMELVKN--GKTVLLSSFTHSAVDNILLKLM--QHPSCNFDMLRLGSTS 1013

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT-----FVGPHNTHGMAVFNDEAS 201
             +HP              +++               T            H      DEAS
Sbjct: 1014 KIHPEVAEHYAANNRRNYETREEFEKLFLAPPVVGATALGIGDWVLQERHFDYCIVDEAS 1073

Query: 202  GTP 204
               
Sbjct: 1074 QIT 1076


>gi|327394548|dbj|BAK11970.1| ABC transporter ATP-binding protein YojI [Pantoea ananatis AJ13355]
          Length = 550

 Score = 39.2 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 52/203 (25%), Gaps = 19/203 (9%)

Query: 40  IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA------ISAGRGIGKTTL 93
               P   F+    WQ   +  V  H   N     P   +        +  G G GK+TL
Sbjct: 308 EPDFPT--FNGETDWQTLELRDVTFHYGDNGFQVGPVNLRLQRGELVFLIGGNGSGKSTL 365

Query: 94  NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ----SLSLH 149
            A ++  L   + G  +I     +    +      S   + +             +    
Sbjct: 366 -AMLLTGLYRPQSGSLLIDGKPVDMGDLDRWRKHFSAVFTDVHLFDRLIDSKGDPASPAR 424

Query: 150 PSGWYAELLEQSMGIDSKHYTITCRTYSEER-PDTFVGPHNTHGMAVFNDEASGTPDIIN 208
              W  +L  Q       +  +  +    +      +         +  DE +   D   
Sbjct: 425 IQQWLEKLKMQDKLKIEGNKILNLQLSKGQSKRLALLLAVAEQRDVLLLDEWAADQDPHF 484

Query: 209 -----KSILGFFTELNPNRFWIM 226
                + +L          F I 
Sbjct: 485 RRVFYRELLPALQAAGKTVFAIS 507


>gi|301605926|ref|XP_002932581.1| PREDICTED: u5 small nuclear ribonucleoprotein 200 kDa helicase
            [Xenopus (Silurana) tropicalis]
          Length = 2140

 Score = 39.2 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/134 (10%), Positives = 28/134 (20%), Gaps = 10/134 (7%)

Query: 79   KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               + A  G GKT    + +L ++        + I   E   +        K+   L  +
Sbjct: 1344 NVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITPMEALAEQVFMDWFEKFQDRLYKK 1403

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                    S              +         T   +           +  +      D
Sbjct: 1404 VVLLTGETSTDLK----------LLGKGNIIISTPEKWDILSRRWKQRKNVQNVSLFIVD 1453

Query: 199  EASGTPDIINKSIL 212
            E           + 
Sbjct: 1454 ETHLIGGANGPVLE 1467


>gi|255021847|ref|ZP_05293857.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus caldus ATCC
           51756]
 gi|254968671|gb|EET26223.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus caldus ATCC
           51756]
          Length = 429

 Score = 39.2 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/181 (10%), Positives = 43/181 (23%), Gaps = 20/181 (11%)

Query: 60  EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP------GMSIICI 113
                   +              +A  G GKT   A  +L  ++  P       +  + +
Sbjct: 38  YEQATPIQARAIPEILKGHDILAAAQTGTGKTAAFALPILHRLARDPVSSGPRPVRALIL 97

Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173
             +           +  +   +P R    +  + + P             + +    +  
Sbjct: 98  VPTRELAAQV-EDNIRLYRGQMPVRSLMLIGGVKIGPQME---------QLRNGADIVVA 147

Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN----KSILGFFTELNPNRFWIMTSN 229
                                +  DEA    D+      + I+G       N  +  T +
Sbjct: 148 TPGRLLDHLQQRSLRLDRVETLVLDEADRMLDMGFIRDIRRIIGMLPAKRQNLLFSATFS 207

Query: 230 T 230
            
Sbjct: 208 P 208


>gi|302548755|ref|ZP_07301097.1| putative terminase, large subunit [Streptomyces hygroscopicus ATCC
           53653]
 gi|302466373|gb|EFL29466.1| putative terminase, large subunit [Streptomyces himastatinicus ATCC
           53653]
          Length = 528

 Score = 39.2 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/304 (9%), Positives = 64/304 (21%), Gaps = 39/304 (12%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM-LWLISTRPGMSI 110
              Q   ++ +D               +  ++     GK+   +    LW +   P   +
Sbjct: 71  REIQAPHLDLIDQAFRRIA---AGERLQVMLTMPPRHGKSQRASRWGPLWYLRRHPTRRV 127

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           +  +       +       +W+      +     +L +  +          +        
Sbjct: 128 MIASYGADLADDH-----GRWIRDQLKEY---SDTLGIRLNPASHAANRFDLEQPRGSSV 179

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEA------SGTP---DIINKSILGFFTELNPN 221
                          G           D+       SG+P   D +       F      
Sbjct: 180 RGGMVT----AGVGGGLTGKGFDLGIIDDPFKGNDDSGSPAQRDRVYDWYRSVFYTRRAP 235

Query: 222 RFWIMTSNTR-RLNGWFYDIFNIPLEDWKRYQIDT-RTVE------------GIDSGFHE 267
              I+  NTR   +     +       W +  +                           
Sbjct: 236 GASIILINTRWHEDDLSGRLLQSEPHRWIQIDLPAIADSPDDPLGRHIGQALWPSQYDEA 295

Query: 268 GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE 327
            +        +     +  Q P+          +I     +        P  +   +   
Sbjct: 296 DLADTRETLGERIWYAMYQQKPRPLEGGVWQWAWISGNRLKPEAWPGIDPTRVVVAVDHA 355

Query: 328 GGDK 331
           GGD 
Sbjct: 356 GGDS 359


>gi|319760754|ref|YP_004124691.1| helicase c2 [Alicycliphilus denitrificans BC]
 gi|330822674|ref|YP_004385977.1| DEAD_2 domain-containing protein [Alicycliphilus denitrificans
           K601]
 gi|317115315|gb|ADU97803.1| helicase c2 [Alicycliphilus denitrificans BC]
 gi|329308046|gb|AEB82461.1| DEAD_2 domain protein [Alicycliphilus denitrificans K601]
          Length = 724

 Score = 39.2 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/181 (10%), Positives = 40/181 (22%), Gaps = 9/181 (4%)

Query: 52  HRWQLEFMEAVD---VHCHSNVNNSNPTIFKCAIS---AGRGIGKTTLNAWMMLWLISTR 105
              Q    E V                +  + AI+   AG G+GK+   +   + +   R
Sbjct: 27  REGQRRMAEQVAQTFAQAQLGKLEDEDSQPRRAIAVVQAGTGVGKSLAYSVPAIAMALAR 86

Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
            G  ++    +    +  +  ++    + +     F +                      
Sbjct: 87  -GTRVLISTATVALQEQLVHKDLPALAARMEQPFQFALAKGRGRYVCKLKLERLAGGAAG 145

Query: 166 SKHYTITCRTYSEERPDTFVGPH--NTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
            +        + EE       P       M  +   A                       
Sbjct: 146 GEDGVPDDDLFPEEAAAQRQRPRHDAEARMRFYASMADALATGGWDGDRDTLDSPPEPEA 205

Query: 224 W 224
           W
Sbjct: 206 W 206


>gi|237740709|ref|ZP_04571190.1| ATP-dependent helicase [Fusobacterium sp. 2_1_31]
 gi|229422726|gb|EEO37773.1| ATP-dependent helicase [Fusobacterium sp. 2_1_31]
          Length = 822

 Score = 39.2 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 42/146 (28%), Gaps = 12/146 (8%)

Query: 34  RFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93
            F   GI    ++ F   H  Q E  + +    + N         K  + AG G GKT  
Sbjct: 127 YFSEDGILVNEIKGFEHRHE-QEEMAKNIQNAINDN--------RKIIVEAGTGTGKTLA 177

Query: 94  NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153
                +    T     +I   N+    +  L  ++   L+    +  F    +    +  
Sbjct: 178 YLIPAIKWAITNK-KKVIIATNTINLQEQLLLKDIP--LAKSVIKDEFTYALVKGRSNYL 234

Query: 154 YAELLEQSMGIDSKHYTITCRTYSEE 179
              L  +     S           E+
Sbjct: 235 CKRLFTELSLGKSIDIESFSVEAREQ 260


>gi|39977783|ref|XP_370279.1| hypothetical protein MGG_06776 [Magnaporthe oryzae 70-15]
 gi|206558153|sp|A4R227|INO80_MAGO7 RecName: Full=Putative DNA helicase INO80
 gi|145013701|gb|EDJ98342.1| hypothetical protein MGG_06776 [Magnaporthe oryzae 70-15]
          Length = 1944

 Score = 39.2 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/257 (11%), Positives = 65/257 (25%), Gaps = 26/257 (10%)

Query: 32   VMRFFPWGIKGKPLEHFSQPH----RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRG 87
            +    P G+    +E           +QL+ +  +       +N               G
Sbjct: 1055 MNFQNPTGLGDVEIEQPKLLTATLKEYQLKGLNWLVNLYEQGINGILADEM--------G 1106

Query: 88   IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
            +GKT  +  +M +L           +    + L N    E+ +++  L    ++   S  
Sbjct: 1107 LGKTIQSISVMAYLAEHHDIWGPFLVVAPASTLHN-WEQEIKRFVPDLKIVPYWGSASDR 1165

Query: 148  LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207
                 +      +              T  +                +  DEA       
Sbjct: 1166 KILRKF---WDRKHSTYKRDAQFHVAITSYQMVVSDVAYFQKMKWQYMILDEAQAIKSSQ 1222

Query: 208  NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI---------FNIPLEDWKRYQIDTRTV 258
              S        +     ++T    + N               F+   E    +  D  + 
Sbjct: 1223 -SSRWKCLLSFHCRNRLLLTGTPIQNNMQELWALLHFIMPSLFDSHEEFSDWFSKDIESH 1281

Query: 259  EGIDSGFHEGIISRYGL 275
               +S  +E  + R  +
Sbjct: 1282 AQSNSKLNEDQLKRLHM 1298


>gi|220903520|ref|YP_002478832.1| hypothetical protein Ddes_0239 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219867819|gb|ACL48154.1| protein of unknown function DUF264 [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 615

 Score = 39.2 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 35/309 (11%), Positives = 68/309 (22%), Gaps = 35/309 (11%)

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ------L 120
              ++ +     +  + A R +G T   A              I   A           +
Sbjct: 178 QREISATKEHRNRMFLKA-RQLGFTWFFAQEAFEDAVLNGDNQIFLSATRAQSEIFLHYI 236

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE- 179
           ++         L   P          +L+     +   +   G            + E  
Sbjct: 237 RDICGEAFDIELKGNPLVLHTAKGPATLYFLATSSRSAQGYHGHVYGDEFFWMPKFKEFW 296

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIINK--SILGFFTELNPNRFWIMTSNTRRLNGWF 237
           +  + +  H      +     S          S   + +       W       +     
Sbjct: 297 KVASGMAAHAKWRRTM-FSTPSIITHEAYPRWSGKEYLSRFKNPAPW-----PDKAA--L 348

Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297
                 P   ++R  +     E                  +  R     +F   +     
Sbjct: 349 RQGLICPDNTYRRI-VTLDDAEAGGCNLFNRADLEQEYSPEDMRQLFGCEFID-DTLAVF 406

Query: 298 PHNYIEEAMS---------REAIDDLYAPLIMGCDIAGEGGDKTVVVFRR----GNIIE- 343
               +E  M          R+A     A +  G D +    D + VV       G+ I  
Sbjct: 407 LLGLLEGCMEDPDGWGIDLRQARPVDNAGVWGGYDPSRTRDDASFVVLLPPQKAGDKIRT 466

Query: 344 -HIFDWSAK 351
                W  K
Sbjct: 467 LERHTWKGK 475


>gi|119586186|gb|EAW65782.1| Fanconi anemia, complementation group M, isoform CRA_b [Homo
           sapiens]
          Length = 2083

 Score = 39.2 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/250 (10%), Positives = 66/250 (26%), Gaps = 19/250 (7%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
               +    G+GKT + A +M       P   ++ +A ++  +      ++     ++  
Sbjct: 105 CNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQ----QIEACYQVMGI 160

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
                 +      +    E+      +      +         P             +  
Sbjct: 161 PQSHMAEMTGSTQASTRKEIWCSKRVLFLTPQVMVNDLSRGACP-------AAEIKCLVI 213

Query: 198 DEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256
           DEA     +     ++    +   +   +  S T   +        I      + ++ + 
Sbjct: 214 DEAHKALGNYAYCQVVRELVKYTNHFRILALSATP-GSDIKAVQQVITNLLIGQIELRSE 272

Query: 257 TVEGI---DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
               I           +     +   A  +   Q  +    + I  N +   M R+  + 
Sbjct: 273 DSPDILTYSHERKVEKLIVPLGEELAAIQKTYIQILESFARSLIQRNVL---MRRDIPNL 329

Query: 314 LYAPLIMGCD 323
               +I+  D
Sbjct: 330 TKYQIILARD 339


>gi|119586187|gb|EAW65783.1| Fanconi anemia, complementation group M, isoform CRA_c [Homo
           sapiens]
          Length = 1979

 Score = 39.2 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/250 (10%), Positives = 66/250 (26%), Gaps = 19/250 (7%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
               +    G+GKT + A +M       P   ++ +A ++  +      ++     ++  
Sbjct: 105 CNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQ----QIEACYQVMGI 160

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
                 +      +    E+      +      +         P             +  
Sbjct: 161 PQSHMAEMTGSTQASTRKEIWCSKRVLFLTPQVMVNDLSRGACP-------AAEIKCLVI 213

Query: 198 DEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256
           DEA     +     ++    +   +   +  S T   +        I      + ++ + 
Sbjct: 214 DEAHKALGNYAYCQVVRELVKYTNHFRILALSATP-GSDIKAVQQVITNLLIGQIELRSE 272

Query: 257 TVEGI---DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
               I           +     +   A  +   Q  +    + I  N +   M R+  + 
Sbjct: 273 DSPDILTYSHERKVEKLIVPLGEELAAIQKTYIQILESFARSLIQRNVL---MRRDIPNL 329

Query: 314 LYAPLIMGCD 323
               +I+  D
Sbjct: 330 TKYQIILARD 339


>gi|119500114|ref|XP_001266814.1| DNA replication helicase Dna2, putative [Neosartorya fischeri NRRL
            181]
 gi|119414979|gb|EAW24917.1| DNA replication helicase Dna2, putative [Neosartorya fischeri NRRL
            181]
          Length = 1607

 Score = 39.2 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 35/120 (29%), Gaps = 7/120 (5%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM--Q 144
            G GKTT  A ++        G S++  + + T + N L         +L      ++  +
Sbjct: 1112 GTGKTTTIAHII--RALVAQGKSVLLTSYTHTAVDNILLKIRDDNFRILRIGATAKVHPE 1169

Query: 145  SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                       +   + +    +   +   T      + F             DEAS   
Sbjct: 1170 VQQFVDLAAVPKSTVEELKASYEESQVVATTCLGVNHNIFNR---RIFDYCIVDEASQIT 1226


>gi|111219431|ref|XP_646847.2| DNA2/NAM7 helicase family protein [Dictyostelium discoideum AX4]
 gi|90970906|gb|EAL72919.2| DNA2/NAM7 helicase family protein [Dictyostelium discoideum AX4]
          Length = 2314

 Score = 39.2 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 45/156 (28%), Gaps = 16/156 (10%)

Query: 80   CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL------- 132
              I    G GKTT   +++  L++  P   I+    S   +       + K L       
Sbjct: 1413 TLIQGPPGTGKTTTIYYLLSILLAINPKFKILVCGPSHASVDEVAKRCLKKSLINVDGKP 1472

Query: 133  ---SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189
               +M+       +       S +     ++   I + +   +  + S            
Sbjct: 1473 YLPNMVRIGKLQNISPDCHRISPYDKTPAQRKEIIRNANIVFSTLSASGSGSVRSNF--- 1529

Query: 190  THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225
                 V  DE++ + +    S++            +
Sbjct: 1530 -KANIVLVDESTQSSEP--ASLIPLCIGNIEKLILV 1562


>gi|23273574|gb|AAH36056.1| FANCM protein [Homo sapiens]
 gi|119586188|gb|EAW65784.1| Fanconi anemia, complementation group M, isoform CRA_d [Homo
           sapiens]
 gi|325463111|gb|ADZ15326.1| Fanconi anemia, complementation group M [synthetic construct]
          Length = 669

 Score = 39.2 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/250 (10%), Positives = 66/250 (26%), Gaps = 19/250 (7%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
               +    G+GKT + A +M       P   ++ +A ++  +      ++     ++  
Sbjct: 105 CNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQ----QIEACYQVMGI 160

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
                 +      +    E+      +      +         P             +  
Sbjct: 161 PQSHMAEMTGSTQASTRKEIWCSKRVLFLTPQVMVNDLSRGACP-------AAEIKCLVI 213

Query: 198 DEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256
           DEA     +     ++    +   +   +  S T   +        I      + ++ + 
Sbjct: 214 DEAHKALGNYAYCQVVRELVKYTNHFRILALSATP-GSDIKAVQQVITNLLIGQIELRSE 272

Query: 257 TVEGI---DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
               I           +     +   A  +   Q  +    + I  N +   M R+  + 
Sbjct: 273 DSPDILTYSHERKVEKLIVPLGEELAAIQKTYIQILESFARSLIQRNVL---MRRDIPNL 329

Query: 314 LYAPLIMGCD 323
               +I+  D
Sbjct: 330 TKYQIILARD 339


>gi|21752288|dbj|BAC04159.1| unnamed protein product [Homo sapiens]
          Length = 669

 Score = 39.2 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/250 (10%), Positives = 66/250 (26%), Gaps = 19/250 (7%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
               +    G+GKT + A +M       P   ++ +A ++  +      ++     ++  
Sbjct: 105 CNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQ----QIEACYQVMGI 160

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
                 +      +    E+      +      +         P             +  
Sbjct: 161 PQSHMAEMTGSTQASTRKEIWCSKRVLFLTPQVMVNDLSRGACP-------AAEIKCLVI 213

Query: 198 DEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256
           DEA     +     ++    +   +   +  S T   +        I      + ++ + 
Sbjct: 214 DEAHKALGNYAYCQVVRELVKYTNHFRILALSATP-GSDIKAVQQVITNLLIGQIELRSE 272

Query: 257 TVEGI---DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
               I           +     +   A  +   Q  +    + I  N +   M R+  + 
Sbjct: 273 DSPDILTYSHERKVEKLIVPLGEELAAIQKTYIQILESFARSLIQRNVL---MRRDIPNL 329

Query: 314 LYAPLIMGCD 323
               +I+  D
Sbjct: 330 TKYQIILARD 339


>gi|74959747|ref|NP_065988.1| Fanconi anemia group M protein [Homo sapiens]
 gi|78099254|sp|Q8IYD8|FANCM_HUMAN RecName: Full=Fanconi anemia group M protein; Short=Protein FACM;
           AltName: Full=ATP-dependent RNA helicase FANCM; AltName:
           Full=Fanconi anemia-associated polypeptide of 250 kDa;
           Short=FAAP250; AltName: Full=Protein Hef ortholog
 gi|71912519|gb|AAZ53290.1| Fanconi anemia complementation group M [Homo sapiens]
 gi|119586185|gb|EAW65781.1| Fanconi anemia, complementation group M, isoform CRA_a [Homo
           sapiens]
 gi|162319388|gb|AAI56491.1| Fanconi anemia, complementation group M [synthetic construct]
          Length = 2048

 Score = 39.2 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/250 (10%), Positives = 66/250 (26%), Gaps = 19/250 (7%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
               +    G+GKT + A +M       P   ++ +A ++  +      ++     ++  
Sbjct: 105 CNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQ----QIEACYQVMGI 160

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
                 +      +    E+      +      +         P             +  
Sbjct: 161 PQSHMAEMTGSTQASTRKEIWCSKRVLFLTPQVMVNDLSRGACP-------AAEIKCLVI 213

Query: 198 DEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256
           DEA     +     ++    +   +   +  S T   +        I      + ++ + 
Sbjct: 214 DEAHKALGNYAYCQVVRELVKYTNHFRILALSATP-GSDIKAVQQVITNLLIGQIELRSE 272

Query: 257 TVEGI---DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
               I           +     +   A  +   Q  +    + I  N +   M R+  + 
Sbjct: 273 DSPDILTYSHERKVEKLIVPLGEELAAIQKTYIQILESFARSLIQRNVL---MRRDIPNL 329

Query: 314 LYAPLIMGCD 323
               +I+  D
Sbjct: 330 TKYQIILARD 339


>gi|320582067|gb|EFW96285.1| hypothetical protein HPODL_1942 [Pichia angusta DL-1]
          Length = 2061

 Score = 39.2 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/156 (11%), Positives = 44/156 (28%), Gaps = 8/156 (5%)

Query: 20   MHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFK 79
             H +    F +       +  + +   +      W     + V              + +
Sbjct: 1900 NHPQLTYDFLSGFFDTLDYCQEQEQDAYVIYTSPWIKNIFKHVYSADSIKGPRRTSDLIR 1959

Query: 80   CAISAGRGIGKTTLNA-WMMLWLISTRPGMSI------ICIANSETQLKNTLWAEVSKWL 132
              + A R   K+T  A  + +W         +      I  A  + + +   W E++K+ 
Sbjct: 1960 KFVRASRKS-KSTTLAFALYIWGELCLEDRLVEIVIDEIISAAIDHEAEGHGWEEITKYW 2018

Query: 133  SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
             + P      +    L    ++    E  +    + 
Sbjct: 2019 PLTPTVEICGLLIHRLRERSYFINNDESELDFLKEP 2054


>gi|293611312|ref|ZP_06693609.1| predicted protein [Acinetobacter sp. SH024]
 gi|292826323|gb|EFF84691.1| predicted protein [Acinetobacter sp. SH024]
          Length = 1043

 Score = 39.2 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 39/151 (25%), Gaps = 14/151 (9%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             +    G GKT   A ++   ++   G  ++  A     LK             +P   
Sbjct: 265 VVVQGPPGTGKTHSIANIICHYLAN--GKKVLVTAQQSHVLKTV--------HEKIPDEL 314

Query: 140 WFEMQSLSLHPSGWYAELL-EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
              + S          +L     + +                       HN H MA+ + 
Sbjct: 315 KPLVVSRIGSSKESKNQLESSIDLIVQKITQMNVAEVRKTIEVLKHQIDHNHHEMALIDR 374

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSN 229
           E     +   ++I     + N      +   
Sbjct: 375 EIYNFAEKHYQNIE---VDGNKKLPMDIVKT 402


>gi|282858205|ref|ZP_06267396.1| ATP-dependent nuclease subunit A (ATP-dependent helicase addA)
           [Pyramidobacter piscolens W5455]
 gi|282583957|gb|EFB89334.1| ATP-dependent nuclease subunit A (ATP-dependent helicase addA)
           [Pyramidobacter piscolens W5455]
          Length = 558

 Score = 39.2 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/219 (10%), Positives = 57/219 (26%), Gaps = 5/219 (2%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             + AG G GKT   AW  +W + TR  +  +       +  + +   ++  L+ L    
Sbjct: 42  TVVGAGAGTGKTWTLAWRFVWTVLTREDVRHMLTLTFTEKAASEMRRRIAALLADLEPAL 101

Query: 140 WFEMQSLSLHPSGWYA-ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               +      +   + +    S         I     S     +     +      + +
Sbjct: 102 AASAELSRRRAAALVSLDQAYISTIHGFGARVIGEAGLSLPVEPSPRLVGDAEASEFWRE 161

Query: 199 EASGTPDIINKSI-LGFFTELNPNRFWIMTSNTRRLNGWF-YDIFNIPLEDWKRYQIDTR 256
            A     +  +    G   E       ++  N                 +  + ++    
Sbjct: 162 LAGALDRLDAEWFCWGMDREYGAAARELL--NGDGAADVVNCWGPEGVADFARSFEGMMS 219

Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN 295
                     E + S      ++ R  +  +F +     
Sbjct: 220 DFGETPESVLEKLGSPDAQALELLRQNLGAEFARLADCW 258


>gi|169830411|ref|YP_001716393.1| type III restriction enzyme, res subunit [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637255|gb|ACA58761.1| type III restriction enzyme, res subunit [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 1021

 Score = 39.2 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 58/182 (31%), Gaps = 24/182 (13%)

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW---LISTRPGMS-------IICI 113
            H  +  N +NP + + A+    G GKTT+ A ++ W       +P          ++C 
Sbjct: 154 EHLINANNEANPGLLRLALKLATGAGKTTVMAMLIAWQTINAVRQPNSKRFTRGFLVVCP 213

Query: 114 ANSETQLKNTLWA----EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS-KH 168
             +       L         +   ++P+    +++   +  + ++A  L + M +     
Sbjct: 214 GLTIRDRLRVLQPNDPDSYYQSRELVPNDMLRDLERAKIVITNYHAFKLRERMELSKGGR 273

Query: 169 YTITCRTYSEERPDTFVG--------PHNTHGMAVFNDEASGT-PDIINKSILGFFTELN 219
             +  R  +    +T                 + V NDEA     +       G     +
Sbjct: 274 SLLQGRGAALNTLETEGQMLQRVMPELMGMKNILVLNDEAHHCYREKPKSDAEGELKGDD 333

Query: 220 PN 221
             
Sbjct: 334 RR 335


>gi|169786937|ref|YP_001708749.1| putative DNA helicase [Acinetobacter baumannii AYE]
 gi|169147098|emb|CAM84758.1| putative DNA helicase [Acinetobacter baumannii AYE]
          Length = 1579

 Score = 39.2 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 39/151 (25%), Gaps = 14/151 (9%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             +    G GKT   A ++   ++   G  ++  A     LK             +P   
Sbjct: 463 VVVQGPPGTGKTHSIANIICHYLAN--GKKVLVTAQQSHVLKTV--------HEKIPDEL 512

Query: 140 WFEMQSLSLHPSGWYAELL-EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
              + S          +L     + +                       HN H MA+ + 
Sbjct: 513 KPLVVSRIGSSKESKNQLESSIDLIVQKITQMNVAEVRKTIEVLKHQIDHNHHEMALIDR 572

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSN 229
           E     +   ++I     + N      +   
Sbjct: 573 EIYNFAEKHYQNIE---VDGNKKLPMDIVKT 600


>gi|220918004|ref|YP_002493308.1| PhoH family protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955858|gb|ACL66242.1| PhoH family protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 359

 Score = 39.2 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 51/205 (24%), Gaps = 23/205 (11%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKT L   M +  +  R    I+    +             +    L        + +
Sbjct: 143 GTGKTYLAMAMAVAYLVERRVKRIVLTRPA------------VEAGERLGFLPGDIAEKV 190

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
           + +    +  L    M    K      R   E  P  F+     +   +  DEA  T   
Sbjct: 191 NPYLRPLHDALF--DMVDYEKATAFIERGTVEVAPLAFMRGRTLNDAFIILDEAQNTTAE 248

Query: 207 INKSILGFFTELNPNRFWIMTSN------TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
             K      T L      ++T +               ++  +              V+ 
Sbjct: 249 QMKMF---LTRLGYGSKAVITGDVTQVDLPSGRGSGLVEVQKVLRGVEGVSFCMFSEVDV 305

Query: 261 IDSGFHEGIISRYGLDSDVARIEIL 285
           +     + ++  Y       R    
Sbjct: 306 VRHPLVQEVVRAYDAFEAERRARTE 330


>gi|197123215|ref|YP_002135166.1| PhoH family protein [Anaeromyxobacter sp. K]
 gi|196173064|gb|ACG74037.1| PhoH family protein [Anaeromyxobacter sp. K]
          Length = 359

 Score = 39.2 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 51/205 (24%), Gaps = 23/205 (11%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKT L   M +  +  R    I+    +             +    L        + +
Sbjct: 143 GTGKTYLAMAMAVAYLVERRVKRIVLTRPA------------VEAGERLGFLPGDIAEKV 190

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
           + +    +  L    M    K      R   E  P  F+     +   +  DEA  T   
Sbjct: 191 NPYLRPLHDALF--DMVDYEKATAFIERGTVEVAPLAFMRGRTLNDAFIILDEAQNTTAE 248

Query: 207 INKSILGFFTELNPNRFWIMTSN------TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260
             K      T L      ++T +               ++  +              V+ 
Sbjct: 249 QMKMF---LTRLGYGSKAVITGDVTQVDLPSGRGSGLVEVQKVLRGVEGVSFCMFSEVDV 305

Query: 261 IDSGFHEGIISRYGLDSDVARIEIL 285
           +     + ++  Y       R    
Sbjct: 306 VRHPLVQEVVRAYDAFEAERRARTE 330


>gi|307212510|gb|EFN88241.1| Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
            [Harpegnathos saltator]
          Length = 2134

 Score = 38.8 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 49/226 (21%), Gaps = 28/226 (12%)

Query: 41   KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
            +    + F Q +  Q +   AV                   + A  G GKTT+  + +L 
Sbjct: 1312 ENIYADRFPQFNPIQTQVFNAVYNSDD-----------NVFVGAPTGSGKTTIAEFAVLR 1360

Query: 101  LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
            L++       + + + E   +        K+   L  +                      
Sbjct: 1361 LLTQNSDGRCVYMVSKEALAELVYADWAMKFNQQLGRKVVLLTGETGTDLK--------- 1411

Query: 161  SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN- 219
             +    +    T   +           +  +      DE           +    +    
Sbjct: 1412 -LLAKGQIIITTADKWDVLSRRWKQRKNVQNIQLFIVDELQLIGGEEGPVLEVACSRARY 1470

Query: 220  ------PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
                       I  S +             P      +    R V 
Sbjct: 1471 ISSQLEKPTRIIALSASLADAKDAAQWLGAPAAATFNFHPSVRPVP 1516


>gi|299771760|ref|YP_003733786.1| exonuclease V, alpha subunit [Acinetobacter sp. DR1]
 gi|298701848|gb|ADI92413.1| exonuclease V, alpha subunit [Acinetobacter sp. DR1]
          Length = 583

 Score = 38.8 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 39/146 (26%), Gaps = 16/146 (10%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
           ++++ +                   I+ G G GKT   A ++  L  T P + +   A +
Sbjct: 119 DYLDLLTDPHQQAALQMVARQSLSIITGGPGTGKTYTLARIIAVLSQTIPNIRVAMAAPT 178

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
               +                     +Q+    P    + L+ + +              
Sbjct: 179 GKAAQRM----------------QEALQNSFNDPKLLESGLVSEELRNQGTQTIHRLLGM 222

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASG 202
              +   F          +  DEAS 
Sbjct: 223 GHSQTPRFNQKQPLPYDVIVVDEASM 248


>gi|121997226|ref|YP_001002013.1| hypothetical protein Hhal_0422 [Halorhodospira halophila SL1]
 gi|121588631|gb|ABM61211.1| conserved hypothetical protein [Halorhodospira halophila SL1]
          Length = 554

 Score = 38.8 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/217 (7%), Positives = 48/217 (22%), Gaps = 17/217 (7%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q +  + +       V     + ++  +    G GKT + A         R     +   
Sbjct: 200 QEQTFQRLAGGITELVQGLEMSPWRLRVIGAAGSGKT-IAAIEFFEAAQARGERPALVCF 258

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
           N        L   +   L        F     +   +   +   +++     ++++    
Sbjct: 259 N------RVLGDRLRARLEGNADVGNFHRLCHAWLEAVGESFDAQRARREPQEYWSEVAD 312

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
              E                +  DE     +   + +     + +    W+         
Sbjct: 313 RLIEHSE------RLPCFDRLIVDEGQDFSEEWWELLRICLVDDDAPVLWLE----DPQQ 362

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271
             +                         + F   ++ 
Sbjct: 363 DLYGRNDQQQSAFVTYRTGKAFRTPRRIAQFVRRLLE 399


>gi|319776569|ref|YP_004139057.1| DNA helicase II [Haemophilus influenzae F3047]
 gi|319897345|ref|YP_004135541.1| DNA helicase ii [Haemophilus influenzae F3031]
 gi|317432850|emb|CBY81215.1| DNA helicase II [Haemophilus influenzae F3031]
 gi|317451160|emb|CBY87393.1| DNA helicase II [Haemophilus influenzae F3047]
          Length = 727

 Score = 38.8 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 81/302 (26%), Gaps = 29/302 (9%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIA 114
           E ++ ++      V           + AG G GKT +    + WLI+       SI+ + 
Sbjct: 6   ELLDGLNDKQREAVAAPLGNH---LVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 62

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            +            S       H+ +          +          +G+      +   
Sbjct: 63  FTNKAAAEMRHRIQSTLAKHAQHQLFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSE 122

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
                     +  HN        DE +  P       +    +               + 
Sbjct: 123 -DQLRLIKRLLKLHN-------FDEKAF-PPKQACWYINNKKDEGLR--------PNDIE 165

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294
            +        ++ ++ YQ        +D       +        +       +F    V+
Sbjct: 166 DFNDRQEREWIKIYQIYQDTCDRAGLVDFAELLIRVYELFEKKPLILQRYQQRFQHILVD 225

Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354
            F   N I+     + +      +++  D      D++ +   RG  IE+I  +      
Sbjct: 226 EFQDTNKIQYK-WIKILAGKTGKVMIVGD-----DDQS-IYGWRGAQIENIQKFLKDFKA 278

Query: 355 ET 356
           ET
Sbjct: 279 ET 280


>gi|290473827|ref|YP_003466701.1| DNA helicase IV [Xenorhabdus bovienii SS-2004]
 gi|289173134|emb|CBJ79907.1| DNA helicase IV [Xenorhabdus bovienii SS-2004]
          Length = 687

 Score = 38.8 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/177 (11%), Positives = 43/177 (24%), Gaps = 16/177 (9%)

Query: 7   TDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHC 66
             Q L   L  +     C   +         W  +G          +W    ++      
Sbjct: 135 AFQALPLPLARIEQFENCRDDY----RMCLDWLNEGGKTIKTLN-QQWIERILQQYAEFF 189

Query: 67  HSNVNNSNPTI---------FKCAISAGRGIGKTTLNAWMMLWLISTRP--GMSIICIAN 115
            +                      + AG G GKT++      WL+  +      ++ +A 
Sbjct: 190 QTIETTPLNRSQCQAVVNGEKSILVLAGAGSGKTSVLIARAGWLLLRQQALPEQVLLLAF 249

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
                         +  +       F   +L +   G +       +  D++     
Sbjct: 250 GRQAADEMNKRIQERLGAKEIQAKTFHALALHIIQQGSHTAPKMSELETDAQKRRDF 306


>gi|257063128|ref|YP_003142800.1| hypothetical protein Shel_03900 [Slackia heliotrinireducens DSM
           20476]
 gi|256790781|gb|ACV21451.1| uncharacterized conserved protein [Slackia heliotrinireducens DSM
           20476]
          Length = 998

 Score = 38.8 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/245 (11%), Positives = 57/245 (23%), Gaps = 22/245 (8%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
            + A  G GKT + A ++      +  M  + I      L +     + ++L +  +R  
Sbjct: 481 ILMAPTGFGKTVIGACII-----GKLKMRTLVIVPKTN-LIDQWKTRLEQFLVIEDNRPA 534

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN----THGMAVF 196
              +S                               S    D    P           V 
Sbjct: 535 LLTKSGRPSRRKRPVIGQIGGGKNAPSGIVDIATFQSLSFKDDLGIPSAKPIVEDYGLVI 594

Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256
            DE          ++      +     + +++  +R +G          E          
Sbjct: 595 CDECHY---GAAPNLELVMKNVTAKYVYGLSATPKRADGL---------ERIIYMHCGPI 642

Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA 316
             +               L     R+ +    P    N  +       A +    +D   
Sbjct: 643 RHKVDPKEQAAEQGFVRTLQPRFTRVRLASLEPGFSFNQVVDALCEHAARNDLIAEDAAG 702

Query: 317 PLIMG 321
            +  G
Sbjct: 703 AVRAG 707


>gi|168181377|ref|ZP_02616041.1| 6-phospho-beta-glucosidase BglA [Clostridium botulinum Bf]
 gi|182675298|gb|EDT87259.1| 6-phospho-beta-glucosidase BglA [Clostridium botulinum Bf]
          Length = 598

 Score = 38.8 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/113 (12%), Positives = 32/113 (28%), Gaps = 3/113 (2%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS---ML 135
           K AI   RG  KTT+    +   +          +              + K  +    +
Sbjct: 113 KVAIIEPRGFAKTTIFDMAVSVWLHCYEKSMFTLLGAKTDSDATQFLDSIKKVFNDNTKI 172

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188
                  +   ++  +G    +    +   +  Y  T  + +  R + + G  
Sbjct: 173 IKCFGKLINIKAIKTNGERYTVNSNEVEFTNGTYIKTVGSGTSVRGNNWGGIR 225


>gi|145633082|ref|ZP_01788814.1| DNA helicase II [Haemophilus influenzae 3655]
 gi|144986308|gb|EDJ92887.1| DNA helicase II [Haemophilus influenzae 3655]
          Length = 726

 Score = 38.8 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 81/302 (26%), Gaps = 29/302 (9%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIA 114
           E ++ ++      V           + AG G GKT +    + WLI+       SI+ + 
Sbjct: 5   ELLDGLNDKQREAVAAPLGNH---LVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            +            S       H+ +          +          +G+      +   
Sbjct: 62  FTNKAAAEMRHRIQSTLAKHAQHQLFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSE 121

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
                     +  HN        DE +  P       +    +               + 
Sbjct: 122 -DQLRLIKRLLKLHN-------FDEKAF-PPKQACWYINNKKDEGLR--------PNDIE 164

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294
            +        ++ ++ YQ        +D       +        +       +F    V+
Sbjct: 165 DFNDRQEREWIKIYQIYQDTCDRAGLVDFAELLIRVYELFEKKPLILQRYQQRFQHILVD 224

Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354
            F   N I+     + +      +++  D      D++ +   RG  IE+I  +      
Sbjct: 225 EFQDTNKIQYK-WIKILAGKTGKVMIVGD-----DDQS-IYGWRGAQIENIQKFLKDFKA 277

Query: 355 ET 356
           ET
Sbjct: 278 ET 279


>gi|123495150|ref|XP_001326674.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
 gi|121909592|gb|EAY14451.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
          Length = 871

 Score = 38.8 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 62/213 (29%), Gaps = 19/213 (8%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              +    G GKT + + +M+      P   II  A +         A V + +S   + 
Sbjct: 72  NTLVCLPTGTGKTFIASVVMMNFYRWYPSSLIIFCATTR--------ALVEQQISAC-NS 122

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                +  ++   G  +  L + +  D +    T +T   E     + P       +  D
Sbjct: 123 FTTIPEDDTVVLVGTSSTTLRKIVWDDYRVVYATPQTVQNEIKKGKLDP--CKISLIIFD 180

Query: 199 EASGTP-DIINKSILGFFTELNPNRFWIMTSNTRRLN-----GWFYDIFNIPLEDWKRYQ 252
           EA           I     E +     I  S T   N        Y++     +   +  
Sbjct: 181 EAHHAHGKQSYGMITRMVAERSSQFRVIGLSATPGSNIQQIQDIIYNLMI--SQIIYKDD 238

Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
            D    +       E I    G D +  R  + 
Sbjct: 239 TDPDIAQYQHQTDIEYITVHAGDDDEAVRHNLD 271


>gi|309973348|gb|ADO96549.1| DNA helicase II [Haemophilus influenzae R2846]
          Length = 727

 Score = 38.8 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 81/302 (26%), Gaps = 29/302 (9%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIA 114
           E ++ ++      V           + AG G GKT +    + WLI+       SI+ + 
Sbjct: 6   ELLDGLNDKQREAVAAPLGNH---LVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 62

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            +            S       H+ +          +          +G+      +   
Sbjct: 63  FTNKAAAEMRHRIQSTLAKHAQHQLFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSE 122

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
                     +  HN        DE +  P       +    +               + 
Sbjct: 123 -DQLRLIKRLLKLHN-------FDEKAF-PPKQACWYINNKKDEGLR--------PNDIE 165

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294
            +        ++ ++ YQ        +D       +        +       +F    V+
Sbjct: 166 DFNDRQEREWIKIYQIYQDTCDRAGLVDFAELLIRVYELFEKKPLILQRYQQRFQHILVD 225

Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354
            F   N I+     + +      +++  D      D++ +   RG  IE+I  +      
Sbjct: 226 EFQDTNKIQYK-WIKILAGKTGKVMIVGD-----DDQS-IYGWRGAQIENIQKFLKDFKA 278

Query: 355 ET 356
           ET
Sbjct: 279 ET 280


>gi|294635655|ref|ZP_06714129.1| helicase IV [Edwardsiella tarda ATCC 23685]
 gi|291090985|gb|EFE23546.1| helicase IV [Edwardsiella tarda ATCC 23685]
          Length = 694

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/209 (11%), Positives = 51/209 (24%), Gaps = 22/209 (10%)

Query: 14  ELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNS 73
            L E  + A               W  +G+ L       +W    +              
Sbjct: 155 RLAEFPVCASLYHD-------CLAWRDEGESLRQ-QHNRQWSQRMLNEQADFFAQVEAQP 206

Query: 74  NPTI---------FKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKN 122
                            + AG G GKT++    + WL+      G  I+ +A      + 
Sbjct: 207 LNPSQALAVVNGEANVLVLAGAGSGKTSVLLARVAWLLQRGLAEGPQILLLAFGRRAAQE 266

Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID--SKHYTITCRTYSEER 180
                 +           F   +L +        +    +  D  ++H  +      +  
Sbjct: 267 MAQRLPACPGGDSVAAKTFHALALQIVEQAGRKPVRLSRLESDRQARHDFLLAEWCQQCA 326

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINK 209
                       +A   DE +   +   +
Sbjct: 327 TKKSQAKGWRQWLASLFDE-TPLEEAFWQ 354


>gi|138895652|ref|YP_001126105.1| DNA/RNA helicase [Geobacillus thermodenitrificans NG80-2]
 gi|134267165|gb|ABO67360.1| DNA/RNA helicase [Geobacillus thermodenitrificans NG80-2]
          Length = 815

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 46/185 (24%), Gaps = 36/185 (19%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P   Q+E +E ++       +       K  +    G+GKT L A         R    +
Sbjct: 224 PRFAQVEALERLEAAYEEGYD-------KAMVVMATGLGKTYLAA------FFARRFSRV 270

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + IA+ E  L+                +  FE               +      D     
Sbjct: 271 LFIAHREEILRQ--------------AKQSFEC------VIPDRTAGIYDGHQKDGNADM 310

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
           +    ++                 +  DE         + +        P     +T+  
Sbjct: 311 VFASIFTLSMKKHLFSFRPDSFDLIVVDEFHHAAARSYERV---LRYFRPEFLLGITATP 367

Query: 231 RRLNG 235
            R + 
Sbjct: 368 DRNDN 372


>gi|39968797|ref|XP_365789.1| hypothetical protein MGG_02491 [Magnaporthe oryzae 70-15]
 gi|145013896|gb|EDJ98537.1| hypothetical protein MGG_02491 [Magnaporthe oryzae 70-15]
          Length = 1689

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 33/119 (27%), Gaps = 5/119 (4%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKTT  A ++      R G S++  + + + + N L       + +L      ++   
Sbjct: 1175 GTGKTTTIAHII--RALIRQGKSVLLTSYTHSAVDNILLKLKGDSIPVLRLGAPAKVHPE 1232

Query: 147  -SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                 +     +        + H      T                      DEAS   
Sbjct: 1233 VQEFATLAAQPMNSFEEIRTAWHDLPVVATTCLGISHPLFNER--TFDYCIVDEASQIT 1289


>gi|149238153|ref|XP_001524953.1| hypothetical protein LELG_03985 [Lodderomyces elongisporus NRRL
            YB-4239]
 gi|146451550|gb|EDK45806.1| hypothetical protein LELG_03985 [Lodderomyces elongisporus NRRL
            YB-4239]
          Length = 1936

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 37/122 (30%), Gaps = 14/122 (11%)

Query: 82   ISAGRGIGKTTLNAWMMLWLIS-TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
            + +  G GKT + A + +W      P   ++ IA  +  ++      V  W   +     
Sbjct: 1141 VGSPTGSGKT-IVAELAIWHAFKEFPKSKVVYIAPMKALVRER----VDDWRKRISKHTS 1195

Query: 141  FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN-THGMAVFNDE 199
             ++  L+        E+ E  + + +           +     +           V  DE
Sbjct: 1196 HKLVELTGDSLPSTHEVKEADIIVTTPEKF-------DGISRNWQTRKFVQQVSLVIMDE 1248

Query: 200  AS 201
              
Sbjct: 1249 IH 1250


>gi|115387249|ref|XP_001211130.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114195214|gb|EAU36914.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 918

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 50/157 (31%), Gaps = 12/157 (7%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              ++   G+GKT + A +ML          I+ +A ++  +   + A            
Sbjct: 325 NLLVALPTGLGKTFIAATIMLNWFRWTRDAQIVFVAPTKPLVAQQVSACF---------G 375

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                +S +   +G  A  +      D + + +T +T   +       P     + +  D
Sbjct: 376 VAGIPRSQTTMLTGEAAPGIRAQEWQDKRVFFMTPQTLINDLKSGIADP--KRIVLLVVD 433

Query: 199 EASGTPDIINKS-ILGFFTELNPNRFWIMTSNTRRLN 234
           EA           ++ F    N +   +  + T    
Sbjct: 434 EAHRATGGYAYVEVVKFLRRYNQSFRVLALTATPGST 470


>gi|169770983|ref|XP_001819961.1| hypothetical protein AOR_1_1462154 [Aspergillus oryzae RIB40]
 gi|238486528|ref|XP_002374502.1| nucleolar ATPase Kre33, putative [Aspergillus flavus NRRL3357]
 gi|83767820|dbj|BAE57959.1| unnamed protein product [Aspergillus oryzae]
 gi|220699381|gb|EED55720.1| nucleolar ATPase Kre33, putative [Aspergillus flavus NRRL3357]
          Length = 1068

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 42/150 (28%), Gaps = 15/150 (10%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q + +             S       A++AGRG GK+      +          +I   +
Sbjct: 261 QAKALLTFVDAIAEKTLRST-----VALTAGRGRGKSAALGVAIA-AAVAHGYSNIFITS 314

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            S   LK  L+  V K    L +    +   L      +   ++  ++    +      +
Sbjct: 315 PSPENLKT-LFEFVFKGFDALGYLDHVDYTILQSTNPDFNKAIVRVNIHRQHRQTIQYIQ 373

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                               +  DEA+  P
Sbjct: 374 PQDAHVLGQAE--------LLVIDEAAAIP 395


>gi|301755892|ref|XP_002913804.1| PREDICTED: DNA2-like helicase-like, partial [Ailuropoda
           melanoleuca]
          Length = 1069

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/198 (12%), Positives = 56/198 (28%), Gaps = 22/198 (11%)

Query: 13  QELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNN 72
           Q+L ++++       F +++    P+  K          ++ Q + M+ V          
Sbjct: 597 QKLRDLIIDFREP-QFISYLSSVLPYDAKDTVACILKGLNKPQRQAMKKV---------- 645

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
                +   +    G GKTT    ++  L +   G S++  + + + + N L       +
Sbjct: 646 LLSKDYTLIVGMP-GTGKTTTICTLVRILYAC--GFSVLLTSYTHSAVDNILLKLAKFKI 702

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQS-----MGIDSKHYTITCRTYSEERPDTFVGP 187
             L      ++       +       +       +      + I   T            
Sbjct: 703 GFLRLGQTQKVHQDIQKFTEEEVCRSKSIKSSALLEELYNSHRIVATTCMGINHP---IF 759

Query: 188 HNTHGMAVFNDEASGTPD 205
                     DEAS    
Sbjct: 760 SRKTFDFCIVDEASQISQ 777


>gi|281346967|gb|EFB22551.1| hypothetical protein PANDA_001621 [Ailuropoda melanoleuca]
          Length = 1016

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/198 (12%), Positives = 56/198 (28%), Gaps = 22/198 (11%)

Query: 13  QELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNN 72
           Q+L ++++       F +++    P+  K          ++ Q + M+ V          
Sbjct: 565 QKLRDLIIDFREP-QFISYLSSVLPYDAKDTVACILKGLNKPQRQAMKKV---------- 613

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
                +   +    G GKTT    ++  L +   G S++  + + + + N L       +
Sbjct: 614 LLSKDYTLIVGMP-GTGKTTTICTLVRILYAC--GFSVLLTSYTHSAVDNILLKLAKFKI 670

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQS-----MGIDSKHYTITCRTYSEERPDTFVGP 187
             L      ++       +       +       +      + I   T            
Sbjct: 671 GFLRLGQTQKVHQDIQKFTEEEVCRSKSIKSSALLEELYNSHRIVATTCMGINHP---IF 727

Query: 188 HNTHGMAVFNDEASGTPD 205
                     DEAS    
Sbjct: 728 SRKTFDFCIVDEASQISQ 745


>gi|189082537|sp|Q0CWI2|MPH1_ASPTN RecName: Full=ATP-dependent DNA helicase mph1
          Length = 1100

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 50/157 (31%), Gaps = 12/157 (7%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              ++   G+GKT + A +ML          I+ +A ++  +   + A            
Sbjct: 325 NLLVALPTGLGKTFIAATIMLNWFRWTRDAQIVFVAPTKPLVAQQVSACF---------G 375

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                +S +   +G  A  +      D + + +T +T   +       P     + +  D
Sbjct: 376 VAGIPRSQTTMLTGEAAPGIRAQEWQDKRVFFMTPQTLINDLKSGIADP--KRIVLLVVD 433

Query: 199 EASGTPDIINKS-ILGFFTELNPNRFWIMTSNTRRLN 234
           EA           ++ F    N +   +  + T    
Sbjct: 434 EAHRATGGYAYVEVVKFLRRYNQSFRVLALTATPGST 470


>gi|168244020|ref|ZP_02668952.1| helicase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194451781|ref|YP_002048512.1| helicase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194410085|gb|ACF70304.1| helicase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205337051|gb|EDZ23815.1| helicase family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 952

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 60/242 (24%), Gaps = 40/242 (16%)

Query: 76  TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
              +  I+   G+GKT     ++  LI    G  I+ +A     +      E        
Sbjct: 122 PRQRILIADAVGLGKTLEAGILVSELIRRGRGKRILVLAVK--SMLTQFQKEF------- 172

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH---NTHG 192
                F +    L  +G            +  HY        +         H   N   
Sbjct: 173 --WSRFAIPLTRLDSAGLQKVRNRIPTNHNPFHYFDKTIISIDTLKQDIEYRHHLENAWW 230

Query: 193 MAVFNDEASGTPDIINKSIL----GFFTELNPNRFWIMTS----------------NTRR 232
             +  DEA         S+        +  +     +  +                +   
Sbjct: 231 DIIVIDEAHNVAQRGTSSLRSKLAKLLSGRSDTLIMLSATPHDGKAESFASLMNMLDPTA 290

Query: 233 LNGW-FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG-----IISRYGLDSDVARIEILG 286
           +     Y+  +   ++    +      + +   F E      +    G + +  R  +  
Sbjct: 291 IANPKEYEYADFADKNLVVRRFKKDVKDQMAGEFPERNIVKLMRPATGAEEEAYRRLVES 350

Query: 287 QF 288
           QF
Sbjct: 351 QF 352


>gi|170725255|ref|YP_001759281.1| ATP-dependent RNA helicase SrmB [Shewanella woodyi ATCC 51908]
 gi|169810602|gb|ACA85186.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 408

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/253 (11%), Positives = 60/253 (23%), Gaps = 24/253 (9%)

Query: 52  HRWQLEFMEAVDVH----CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107
               LE ++A+  H                      A  G GKT       L  I   P 
Sbjct: 9   DPILLESLKAMGHHKPTTIQQQTIPLAMDQRDILARAPTGTGKTASFLLPALQHIIDFPR 68

Query: 108 M-----SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
                  ++ +  +          E++  +        +E+   ++  +G       Q  
Sbjct: 69  RFSGQARVVILTPT---------RELASQIHRYASHLAYELDLNTVIITGG-VPYAPQEE 118

Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222
            +      +                +      +  DEA    D+   +++      +  R
Sbjct: 119 ALKGNVDILVATPGRLMEYLDKGLFNAEEVEILVIDEADRMLDMGFSAVVETIAIESVGR 178

Query: 223 FWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI 282
              M  +            +  L D  + +         +       I            
Sbjct: 179 KQTMLFSATLEGSDVGRFSHQLLTDPVKVE---AEAPRSEKAKIHQWIHIADDKEHKF-- 233

Query: 283 EILGQFPQQEVNN 295
           ++L    QQE   
Sbjct: 234 KLLCSILQQEETQ 246


>gi|34496679|ref|NP_900894.1| hypothetical protein CV_1224 [Chromobacterium violaceum ATCC 12472]
 gi|34102534|gb|AAQ58899.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 693

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 59/231 (25%), Gaps = 19/231 (8%)

Query: 65  HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124
           H           +F   +    G GKT  +    L          +I +    + ++ T 
Sbjct: 183 HAARGKAGRPQGLFSLTV--PTGGGKTLASLAFALDHALMHGLRRVIFVIPFTSVVEQTA 240

Query: 125 WAEVSKWLSMLPHRHWFEM-QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS------ 177
            A   +    L  +   E   +    P        + +  +++  + +   T        
Sbjct: 241 -AVFRQAFGDLGEQAVLEHHSAFVDDPGKAPEARDKLTQAMENWDWPVVVTTSVQFFESL 299

Query: 178 -EERPDTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNT-- 230
              RP      HN  G  V  DEA   P         ++         +      +    
Sbjct: 300 FASRPSRCRKLHNIAGSVVILDEAQALPLAQLRPCVAALDELARNYRTSIVLCTATQPAL 359

Query: 231 --RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279
             R   G F  +  +  +  + ++   R          +  +      S  
Sbjct: 360 SERDFVGGFAQVEELAQDPARLFRALERVTVRHIGEADDAALVARFAASPQ 410


>gi|291565642|dbj|BAI87914.1| arsenite-antimonite (ArsAB) efflux family [Arthrospira platensis
           NIES-39]
          Length = 637

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 8/127 (6%)

Query: 80  CAISAGRG-IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
            A+ +G+G +GKTTL   + L   S  P   I+ ++        +L   +   +   P+ 
Sbjct: 10  LALFSGKGGVGKTTLACGLALHWASQFPDDRILLLSTDPAH---SLGDVLQMQVDNTPNH 66

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               +  + L      A      +    + Y  T +       +            V++ 
Sbjct: 67  VAASVDFVPLPNLSIRALDAHILLKDFKERYGDTLQLL----VERGSFVEGEDLTPVWDL 122

Query: 199 EASGTPD 205
           E  G  +
Sbjct: 123 EWPGVDE 129


>gi|284051493|ref|ZP_06381703.1| arsenite-activated ATPase ArsA [Arthrospira platensis str. Paraca]
          Length = 637

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 8/127 (6%)

Query: 80  CAISAGRG-IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
            A+ +G+G +GKTTL   + L   S  P   I+ ++        +L   +   +   P+ 
Sbjct: 10  LALFSGKGGVGKTTLACGLALHWASQFPDDRILLLSTDPAH---SLGDVLQMQVDNTPNH 66

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               +  + L      A      +    + Y  T +       +            V++ 
Sbjct: 67  VAASVDFVPLPNLSIRALDAHILLKDFKERYGDTLQLL----VERGSFVEGEDLTPVWDL 122

Query: 199 EASGTPD 205
           E  G  +
Sbjct: 123 EWPGVDE 129


>gi|268324635|emb|CBH38223.1| conserved hypothetical protein, type III restriction enzyme, res
           subunit family [uncultured archaeon]
          Length = 858

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/171 (12%), Positives = 48/171 (28%), Gaps = 21/171 (12%)

Query: 52  HRWQLEFMEAVDVHCHS---NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108
             +Q+E                +     +F  A     G GKT + A ++L+L       
Sbjct: 38  RPYQIEAFTRFFHCLDREFPGKDWPLHFLFNMA----TGSGKTLIMAGLILYLYVKGYRN 93

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            +  + ++     N +      +L+ L  +  F+              ++      D+  
Sbjct: 94  FLFFVNST-----NIIEKTRDNFLNPLSAKFLFKENIRFGTRRVNITPVVNCEGVNDNGI 148

Query: 169 YTITCR--------TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211
                         T  +E   T+    +   + +  DEA          +
Sbjct: 149 NICFTTIQKLHSDLTTEKENAITYEDFKDKKIVLL-ADEAHHINTQTKAQM 198


>gi|58336408|ref|YP_192993.1| phage DEAD box family helicase [Lactobacillus acidophilus NCFM]
 gi|58253725|gb|AAV41962.1| putative phage DEAD box family helicase [Lactobacillus acidophilus
           NCFM]
          Length = 944

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 62/185 (33%), Gaps = 32/185 (17%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109
           +P++ Q   ++ ++   +           +  + +  G GKT L A+ +           
Sbjct: 207 EPNQMQKAALKNLNSLVNEGAK-------RALVVSATGTGKTYLGAFAV----KDFKPKK 255

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
            + I + +   K TL            ++     +S     SG + +  ++ +       
Sbjct: 256 FLYIVHRQQIAKKTL---------DSFYKVIGGAKSDYGILSGNHHDTDKRYL------- 299

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
             T +T S++               +  DEA  T     + I+ +F    P     MT+ 
Sbjct: 300 FATIQTLSQDNV--LDDLVRNEFDYILIDEAHRTAAPSYQKIINYF---QPKFLLGMTAT 354

Query: 230 TRRLN 234
             R++
Sbjct: 355 PERMD 359


>gi|50547433|ref|XP_501186.1| YALI0B21538p [Yarrowia lipolytica]
 gi|74660084|sp|Q6CDS6|ROK1_YARLI RecName: Full=ATP-dependent RNA helicase ROK1
 gi|49647052|emb|CAG83439.1| YALI0B21538p [Yarrowia lipolytica]
          Length = 547

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/175 (12%), Positives = 41/175 (23%), Gaps = 23/175 (13%)

Query: 36  FPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95
            P+ +       ++ P   Q E +  +                     A  G GKT   +
Sbjct: 119 HPYLLANLKKNKYTDPTPIQCESIPTMLNG------------RDLIACAPTGSGKTMAYS 166

Query: 96  WMMLWLISTRPGM-------SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
             M+ ++  + G          + +A ++        A  S  + +   +   +   L  
Sbjct: 167 IPMVEMLGKKKGSKDAKKGIKALVVAPTKELASQIFNAVFSLCVGVGKKKDELKPCLLDK 226

Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
             +         S   D                             V  DEA   
Sbjct: 227 STADKLRNGKVSSQKYD----ICITTPLRLVSALNDGSLDLGSLDLVIFDEADKL 277


>gi|312113987|ref|YP_004011583.1| metal dependent phosphohydrolase [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219116|gb|ADP70484.1| metal dependent phosphohydrolase [Rhodomicrobium vannielii ATCC
           17100]
          Length = 743

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 37/174 (21%), Gaps = 16/174 (9%)

Query: 68  SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN---SETQLKNTL 124
               N  P++F   +    G GKT  +    L          II          Q  +  
Sbjct: 235 RGKANEAPSLFTLTV--PTGGGKTLTSLAFALDHARAHGMRRIIYAIPFTSVIDQTADIF 292

Query: 125 WAE----VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
                  +                S          +     +   +     +  +     
Sbjct: 293 RKLFGDDIVLEHHSAIDEEKVRNLSSRDKLRLAMEDWAAPVVVTTTVQLFESLFSAR--- 349

Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDI----INKSILGFFTELNPNRFWIMTSNT 230
           P      HN  G  +  DEA   P      I ++I                +  
Sbjct: 350 PSRCRKLHNIAGSVIVLDEAQTLPRHLLIPIMRAIEELAANYGCTVVLCTATQP 403


>gi|291618151|ref|YP_003520893.1| YojI [Pantoea ananatis LMG 20103]
 gi|291153181|gb|ADD77765.1| YojI [Pantoea ananatis LMG 20103]
          Length = 550

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 51/195 (26%), Gaps = 17/195 (8%)

Query: 48  FSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA------ISAGRGIGKTTLNAWMMLWL 101
           F+    WQ   +  V  H   N     P   +        +  G G GK+TL A ++  L
Sbjct: 314 FNGETDWQTLELRDVTFHYGDNGFQVGPVNLRLQRGELVFLIGGNGSGKSTL-AMLLTGL 372

Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ----SLSLHPSGWYAEL 157
              + G  +I     +    +      S   + +             +       W  +L
Sbjct: 373 YRPQSGSLLIDGKPVDMGDLDRWRKHFSAVFTDVHLFDRLIDSKGDPASPARIQQWLEKL 432

Query: 158 LEQSMGIDSKHYTITCRTYSEER-PDTFVGPHNTHGMAVFNDEASGTPDIIN-----KSI 211
             Q       +  +  +    +      +         +  DE +   D        + +
Sbjct: 433 KMQDKLKIEGNKILNLQLSKGQSKRLALLLAVAEQRDVLLLDEWAADQDPHFRRVFYREL 492

Query: 212 LGFFTELNPNRFWIM 226
           L          F I 
Sbjct: 493 LPALQAAGKTVFAIS 507


>gi|301782221|ref|XP_002926521.1| PREDICTED: u5 small nuclear ribonucleoprotein 200 kDa helicase-like
            [Ailuropoda melanoleuca]
          Length = 2136

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 15/161 (9%)

Query: 54   WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +Q +F     +     + V NS+  +F   + A  G GKT    + +L ++        +
Sbjct: 1321 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1377

Query: 112  CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             I   E   +         W      R                    +  +         
Sbjct: 1378 YITPMEALAEQVY----MDWYEKFQDRL------NKKVVLLTGETSTDLKLLGKGNIIIS 1427

Query: 172  TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212
            T   +           +  +      DE           + 
Sbjct: 1428 TPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLE 1468


>gi|281371480|ref|NP_001032855.2| activating signal cointegrator 1 complex subunit 3-like 1 [Rattus
            norvegicus]
          Length = 2136

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 15/161 (9%)

Query: 54   WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +Q +F     +     + V NS+  +F   + A  G GKT    + +L ++        +
Sbjct: 1321 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1377

Query: 112  CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             I   E   +         W      R                    +  +         
Sbjct: 1378 YITPMEALAEQVY----MDWYEKFQDRL------NKKVVLLTGETSTDLKLLGKGNIIIS 1427

Query: 172  TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212
            T   +           +  +      DE           + 
Sbjct: 1428 TPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLE 1468


>gi|281343455|gb|EFB19039.1| hypothetical protein PANDA_016179 [Ailuropoda melanoleuca]
          Length = 2121

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 15/161 (9%)

Query: 54   WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +Q +F     +     + V NS+  +F   + A  G GKT    + +L ++        +
Sbjct: 1306 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1362

Query: 112  CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             I   E   +         W      R                    +  +         
Sbjct: 1363 YITPMEALAEQVY----MDWYEKFQDRL------NKKVVLLTGETSTDLKLLGKGNIIIS 1412

Query: 172  TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212
            T   +           +  +      DE           + 
Sbjct: 1413 TPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLE 1453


>gi|259146773|emb|CAY80030.1| Slh1p [Saccharomyces cerevisiae EC1118]
          Length = 1967

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 12/121 (9%)

Query: 82   ISAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
            + +  G GKT + A + +W      PG  I+ IA  +  ++      V  W   +     
Sbjct: 1160 VGSPTGSGKT-IVAELAIWHAFKTFPGKKIVYIAPMKALVRER----VDDWRKKI----- 1209

Query: 141  FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
              +    +      +    + +  D+     T   +     +            +  DE 
Sbjct: 1210 TPVTGDKVVELTGDSLPDPKDV-HDATIVITTPEKFDGISRNWQTRKFVQDVSLIIMDEI 1268

Query: 201  S 201
             
Sbjct: 1269 H 1269


>gi|256272657|gb|EEU07634.1| Slh1p [Saccharomyces cerevisiae JAY291]
          Length = 1967

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 12/121 (9%)

Query: 82   ISAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
            + +  G GKT + A + +W      PG  I+ IA  +  ++      V  W   +     
Sbjct: 1160 VGSPTGSGKT-IVAELAIWHAFKTFPGKKIVYIAPMKALVRER----VDDWRKKI----- 1209

Query: 141  FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
              +    +      +    + +  D+     T   +     +            +  DE 
Sbjct: 1210 TPVTGDKVVELTGDSLPDPKDV-HDATIVITTPEKFDGISRNWQTRKFVQDVSLIIMDEI 1268

Query: 201  S 201
             
Sbjct: 1269 H 1269


>gi|227874786|ref|ZP_03992939.1| helicase [Mobiluncus mulieris ATCC 35243]
 gi|227844561|gb|EEJ54717.1| helicase [Mobiluncus mulieris ATCC 35243]
          Length = 920

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/192 (10%), Positives = 38/192 (19%), Gaps = 24/192 (12%)

Query: 39  GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98
           G  G  LE  S    W       +  H      +              G GK+ +    +
Sbjct: 16  GKLGDSLEVLSGFEAWAESTGRPLYPHQLEAAEHIILEDRHLIAPTPTGSGKSLIGVAGI 75

Query: 99  LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
           LW ++   G      A  +  +    +  V     +    +   +       +       
Sbjct: 76  LWALAR--GGVAYYTAPLKALVSEKFFDLVD----LFGAANVGMITGDGSVNAAAPIICA 129

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII--NKSILGFFT 216
              +  +                             V  DE     D             
Sbjct: 130 TAEILANLALRWGDTL----------------DVDTVVMDEFHYYGDAERGWAWQAPLLL 173

Query: 217 ELNPNRFWIMTS 228
             N     +  +
Sbjct: 174 LPNTRFILMSAT 185


>gi|238604032|ref|XP_002396101.1| hypothetical protein MPER_03733 [Moniliophthora perniciosa FA553]
 gi|215468003|gb|EEB97031.1| hypothetical protein MPER_03733 [Moniliophthora perniciosa FA553]
          Length = 205

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 4/66 (6%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q      +  H      +S+P   K  I    G GK+T+   ++ +    +    ++ +A
Sbjct: 74  QERAFRIIANH----AASSHPEQLKMYIGGMGGTGKSTVLKALIHYFSVRKEDHRLLVVA 129

Query: 115 NSETQL 120
            + +  
Sbjct: 130 PTGSAA 135


>gi|207344888|gb|EDZ71878.1| YGR271Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 960

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 12/121 (9%)

Query: 82  ISAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           + +  G GKT + A + +W      PG  I+ IA  +  ++      V  W   +     
Sbjct: 153 VGSPTGSGKT-IVAELAIWHAFKTFPGKKIVYIAPMKALVRER----VDDWRKKI----- 202

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
             +    +      +    + +  D+     T   +     +            +  DE 
Sbjct: 203 TPVTGDKVVELTGDSLPDPKDV-HDATIVITTPEKFDGISRNWQTRKFVQDVSLIIMDEI 261

Query: 201 S 201
            
Sbjct: 262 H 262


>gi|194220416|ref|XP_001492729.2| PREDICTED: activating signal cointegrator 1 complex subunit 3-like 1
            isoform 1 [Equus caballus]
          Length = 2136

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 15/161 (9%)

Query: 54   WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +Q +F     +     + V NS+  +F   + A  G GKT    + +L ++        +
Sbjct: 1321 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1377

Query: 112  CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             I   E   +         W      R                    +  +         
Sbjct: 1378 YITPMEALAEQVY----MDWYEKFQDRL------NKKVVLLTGETSTDLKLLGKGNIIIS 1427

Query: 172  TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212
            T   +           +  +      DE           + 
Sbjct: 1428 TPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLE 1468


>gi|330443576|ref|NP_011787.2| Slh1p [Saccharomyces cerevisiae S288c]
 gi|190406727|gb|EDV09994.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
 gi|329138905|tpg|DAA08359.2| TPA: Slh1p [Saccharomyces cerevisiae S288c]
          Length = 1967

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 12/121 (9%)

Query: 82   ISAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
            + +  G GKT + A + +W      PG  I+ IA  +  ++      V  W   +     
Sbjct: 1160 VGSPTGSGKT-IVAELAIWHAFKTFPGKKIVYIAPMKALVRER----VDDWRKKI----- 1209

Query: 141  FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
              +    +      +    + +  D+     T   +     +            +  DE 
Sbjct: 1210 TPVTGDKVVELTGDSLPDPKDV-HDATIVITTPEKFDGISRNWQTRKFVQDVSLIIMDEI 1268

Query: 201  S 201
             
Sbjct: 1269 H 1269


>gi|151943543|gb|EDN61854.1| conserved protein [Saccharomyces cerevisiae YJM789]
          Length = 1967

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 12/121 (9%)

Query: 82   ISAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
            + +  G GKT + A + +W      PG  I+ IA  +  ++      V  W   +     
Sbjct: 1160 VGSPTGSGKT-IVAELAIWHAFKTFPGKKIVYIAPMKALVRER----VDDWRKKI----- 1209

Query: 141  FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
              +    +      +    + +  D+     T   +     +            +  DE 
Sbjct: 1210 TPVTGDKVVELTGDSLPDPKDV-HDATIVITTPEKFDGISRNWQTRKFVQDVSLIIMDEI 1268

Query: 201  S 201
             
Sbjct: 1269 H 1269


>gi|149369448|ref|ZP_01889300.1| hypothetical protein SCB49_06472 [unidentified eubacterium SCB49]
 gi|149356875|gb|EDM45430.1| hypothetical protein SCB49_06472 [unidentified eubacterium SCB49]
          Length = 849

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 40/149 (26%), Gaps = 16/149 (10%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKT L   +M      R     + +A +   ++N  +  + +          F     
Sbjct: 6   GSGKTVLGLEIM-----QRIDKKALVLAPTL-TIRNQWYDRMDEC---------FVKDKD 50

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
            +  S     L E +       ++        +         +     +  DEA    + 
Sbjct: 51  VISVSFDIKNLAEITFTTYQSLHSFFKNDCDFDNEKLIAFFADAGIETLVLDEAHHLKNE 110

Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLNG 235
             K +      +       +T+     + 
Sbjct: 111 WWKPLF-TLKSIPNCTIVALTATPPYDSD 138


>gi|149193952|ref|ZP_01871050.1| hypothetical protein CMTB2_02668 [Caminibacter mediatlanticus TB-2]
 gi|149135905|gb|EDM24383.1| hypothetical protein CMTB2_02668 [Caminibacter mediatlanticus TB-2]
          Length = 908

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/211 (11%), Positives = 62/211 (29%), Gaps = 28/211 (13%)

Query: 3   RLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEH-----------FSQP 51
           R     +  + ++  +   A+       F+   F  G   K   +           F + 
Sbjct: 20  RFSKDIKLYDYQIEALKNTAK-------FLSILFEDGQINKKRVYELYKDKLENNIFLED 72

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +    +   + +            + +C+     G GKT L    ++ L+ + P  +I+
Sbjct: 73  TKIGDSYFSELFLGKKQEKIEFKELVNRCSFWMATGSGKT-LVMIKLIELLQSFPKKNIL 131

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +A ++         E+   +      +     S  +            +  +       
Sbjct: 132 ILAPTD---------EIINQIKKHIDIYNSYHTSNKIEIYDLRDFDDRYNNRVYIYRSNN 182

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
              + ++E+   F+   N     +  DEA  
Sbjct: 183 IVDSETKEKQLNFMEFFNNGEWYLILDEAHK 213


>gi|149180791|ref|ZP_01859294.1| Putative helicase [Bacillus sp. SG-1]
 gi|148851581|gb|EDL65728.1| Putative helicase [Bacillus sp. SG-1]
          Length = 1049

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 63/187 (33%), Gaps = 29/187 (15%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW-MMLWLISTRPGM 108
           QP+ +Q E +E +               +K  + A  G+GKT ++A+    +  +     
Sbjct: 322 QPYYYQKEILEKLQA------EREVHHRYKNLLVAATGVGKTVISAFDYKRFRKANGGKA 375

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            ++ +A+ E  LK +L      + ++L   ++ +M   +  PS      +        + 
Sbjct: 376 KLLFVAHREEILKQSLHT----FRAVLREPNFGDMLVGAQQPSSLDHLFVSIQSFNSKEL 431

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
           +  T   +                  +  DE         + +        P     +T+
Sbjct: 432 HQHTESGF---------------YDFIVVDEFHHAAADSYQKL---LNHYQPQILLGLTA 473

Query: 229 NTRRLNG 235
              R++G
Sbjct: 474 TPERMDG 480


>gi|148696230|gb|EDL28177.1| activating signal cointegrator 1 complex subunit 3-like 1, isoform
            CRA_c [Mus musculus]
          Length = 2143

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 15/161 (9%)

Query: 54   WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +Q +F     +     + V NS+  +F   + A  G GKT    + +L ++        +
Sbjct: 1328 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1384

Query: 112  CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             I   E   +         W      R                    +  +         
Sbjct: 1385 YITPMEALAEQVY----MDWYEKFQDRL------NKKVVLLTGETSTDLKLLGKGNIIIS 1434

Query: 172  TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212
            T   +           +  +      DE           + 
Sbjct: 1435 TPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLE 1475


>gi|148696228|gb|EDL28175.1| activating signal cointegrator 1 complex subunit 3-like 1, isoform
            CRA_a [Mus musculus]
          Length = 2135

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 15/161 (9%)

Query: 54   WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +Q +F     +     + V NS+  +F   + A  G GKT    + +L ++        +
Sbjct: 1320 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1376

Query: 112  CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             I   E   +         W      R                    +  +         
Sbjct: 1377 YITPMEALAEQVY----MDWYEKFQDRL------NKKVVLLTGETSTDLKLLGKGNIIIS 1426

Query: 172  TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212
            T   +           +  +      DE           + 
Sbjct: 1427 TPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLE 1467


>gi|1143249|gb|AAC49699.1| G9365 ORF [Saccharomyces cerevisiae]
          Length = 1967

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 12/121 (9%)

Query: 82   ISAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
            + +  G GKT + A + +W      PG  I+ IA  +  ++      V  W   +     
Sbjct: 1160 VGSPTGSGKT-IVAELAIWHAFKTFPGKKIVYIAPMKALVRER----VDDWRKKI----- 1209

Query: 141  FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
              +    +      +    + +  D+     T   +     +            +  DE 
Sbjct: 1210 TPVTGDKVVELTGDSLPDPKDV-HDATIVITTPEKFDGISRNWQTRKFVQDVSLIIMDEI 1268

Query: 201  S 201
             
Sbjct: 1269 H 1269


>gi|73980233|ref|XP_864157.1| PREDICTED: similar to activating signal cointegrator 1 complex
            subunit 3-like 1 isoform 5 [Canis familiaris]
          Length = 2146

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 15/161 (9%)

Query: 54   WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +Q +F     +     + V NS+  +F   + A  G GKT    + +L ++        +
Sbjct: 1328 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1384

Query: 112  CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             I   E   +         W      R                    +  +         
Sbjct: 1385 YITPMEALAEQVY----MDWYEKFQDRL------NKKVVLLTGETSTDLKLLGKGNIIIS 1434

Query: 172  TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212
            T   +           +  +      DE           + 
Sbjct: 1435 TPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLE 1475


>gi|73980225|ref|XP_532949.2| PREDICTED: similar to activating signal cointegrator 1 complex
            subunit 3-like 1 isoform 1 [Canis familiaris]
          Length = 2143

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 15/161 (9%)

Query: 54   WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +Q +F     +     + V NS+  +F   + A  G GKT    + +L ++        +
Sbjct: 1328 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1384

Query: 112  CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             I   E   +         W      R                    +  +         
Sbjct: 1385 YITPMEALAEQVY----MDWYEKFQDRL------NKKVVLLTGETSTDLKLLGKGNIIIS 1434

Query: 172  TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212
            T   +           +  +      DE           + 
Sbjct: 1435 TPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLE 1475


>gi|73980237|ref|XP_864200.1| PREDICTED: similar to activating signal cointegrator 1 complex
            subunit 3-like 1 isoform 7 [Canis familiaris]
          Length = 2143

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 15/161 (9%)

Query: 54   WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +Q +F     +     + V NS+  +F   + A  G GKT    + +L ++        +
Sbjct: 1327 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1383

Query: 112  CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             I   E   +         W      R                    +  +         
Sbjct: 1384 YITPMEALAEQVY----MDWYEKFQDRL------NKKVVLLTGETSTDLKLLGKGNIIIS 1433

Query: 172  TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212
            T   +           +  +      DE           + 
Sbjct: 1434 TPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLE 1474


>gi|73980239|ref|XP_864228.1| PREDICTED: similar to activating signal cointegrator 1 complex
            subunit 3-like 1 isoform 8 [Canis familiaris]
          Length = 2132

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 15/161 (9%)

Query: 54   WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +Q +F     +     + V NS+  +F   + A  G GKT    + +L ++        +
Sbjct: 1317 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1373

Query: 112  CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             I   E   +         W      R                    +  +         
Sbjct: 1374 YITPMEALAEQVY----MDWYEKFQDRL------NKKVVLLTGETSTDLKLLGKGNIIIS 1423

Query: 172  TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212
            T   +           +  +      DE           + 
Sbjct: 1424 TPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLE 1464


>gi|73980243|ref|XP_864276.1| PREDICTED: similar to activating signal cointegrator 1 complex
            subunit 3-like 1 isoform 10 [Canis familiaris]
          Length = 2117

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 15/161 (9%)

Query: 54   WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +Q +F     +     + V NS+  +F   + A  G GKT    + +L ++        +
Sbjct: 1302 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1358

Query: 112  CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             I   E   +         W      R                    +  +         
Sbjct: 1359 YITPMEALAEQVY----MDWYEKFQDRL------NKKVVLLTGETSTDLKLLGKGNIIIS 1408

Query: 172  TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212
            T   +           +  +      DE           + 
Sbjct: 1409 TPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLE 1449


>gi|73980235|ref|XP_864176.1| PREDICTED: similar to activating signal cointegrator 1 complex
            subunit 3-like 1 isoform 6 [Canis familiaris]
          Length = 2151

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 15/161 (9%)

Query: 54   WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +Q +F     +     + V NS+  +F   + A  G GKT    + +L ++        +
Sbjct: 1328 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1384

Query: 112  CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             I   E   +         W      R                    +  +         
Sbjct: 1385 YITPMEALAEQVY----MDWYEKFQDRL------NKKVVLLTGETSTDLKLLGKGNIIIS 1434

Query: 172  TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212
            T   +           +  +      DE           + 
Sbjct: 1435 TPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLE 1475


>gi|73980241|ref|XP_864252.1| PREDICTED: similar to activating signal cointegrator 1 complex
            subunit 3-like 1 isoform 9 [Canis familiaris]
          Length = 2138

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 15/161 (9%)

Query: 54   WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +Q +F     +     + V NS+  +F   + A  G GKT    + +L ++        +
Sbjct: 1323 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1379

Query: 112  CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             I   E   +         W      R                    +  +         
Sbjct: 1380 YITPMEALAEQVY----MDWYEKFQDRL------NKKVVLLTGETSTDLKLLGKGNIIIS 1429

Query: 172  TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212
            T   +           +  +      DE           + 
Sbjct: 1430 TPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLE 1470


>gi|73980247|ref|XP_864316.1| PREDICTED: similar to activating signal cointegrator 1 complex
            subunit 3-like 1 isoform 12 [Canis familiaris]
          Length = 2140

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 15/161 (9%)

Query: 54   WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +Q +F     +     + V NS+  +F   + A  G GKT    + +L ++        +
Sbjct: 1325 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1381

Query: 112  CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             I   E   +         W      R                    +  +         
Sbjct: 1382 YITPMEALAEQVY----MDWYEKFQDRL------NKKVVLLTGETSTDLKLLGKGNIIIS 1431

Query: 172  TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212
            T   +           +  +      DE           + 
Sbjct: 1432 TPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLE 1472


>gi|73980245|ref|XP_864297.1| PREDICTED: similar to activating signal cointegrator 1 complex
            subunit 3-like 1 isoform 11 [Canis familiaris]
          Length = 2148

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 15/161 (9%)

Query: 54   WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +Q +F     +     + V NS+  +F   + A  G GKT    + +L ++        +
Sbjct: 1333 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1389

Query: 112  CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             I   E   +         W      R                    +  +         
Sbjct: 1390 YITPMEALAEQVY----MDWYEKFQDRL------NKKVVLLTGETSTDLKLLGKGNIIIS 1439

Query: 172  TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212
            T   +           +  +      DE           + 
Sbjct: 1440 TPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLE 1480


>gi|40018610|ref|NP_796188.2| U5 small nuclear ribonucleoprotein 200 kDa helicase [Mus musculus]
 gi|38649232|gb|AAH63261.1| Small nuclear ribonucleoprotein 200 (U5) [Mus musculus]
 gi|123232173|emb|CAM17440.1| activating signal cointegrator 1 complex subunit 3-like 1 [Mus
            musculus]
          Length = 2136

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 15/161 (9%)

Query: 54   WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +Q +F     +     + V NS+  +F   + A  G GKT    + +L ++        +
Sbjct: 1321 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1377

Query: 112  CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             I   E   +         W      R                    +  +         
Sbjct: 1378 YITPMEALAEQVY----MDWYEKFQDRL------NKKVVLLTGETSTDLKLLGKGNIIIS 1427

Query: 172  TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212
            T   +           +  +      DE           + 
Sbjct: 1428 TPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLE 1468


>gi|50510635|dbj|BAD32303.1| mKIAA0788 protein [Mus musculus]
          Length = 1909

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 15/161 (9%)

Query: 54   WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +Q +F     +     + V NS+  +F   + A  G GKT    + +L ++        +
Sbjct: 1094 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1150

Query: 112  CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             I   E   +         W      R                    +  +         
Sbjct: 1151 YITPMEALAEQVY----MDWYEKFQDRL------NKKVVLLTGETSTDLKLLGKGNIIIS 1200

Query: 172  TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212
            T   +           +  +      DE           + 
Sbjct: 1201 TPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLE 1241


>gi|1723776|sp|P53327|SLH1_YEAST RecName: Full=Antiviral helicase SLH1; AltName: Full=SKI2-like
            helicase 1
 gi|1323493|emb|CAA97301.1| unnamed protein product [Saccharomyces cerevisiae]
          Length = 1967

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 12/121 (9%)

Query: 82   ISAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
            + +  G GKT + A + +W      PG  I+ IA  +  ++      V  W   +     
Sbjct: 1160 VGSPTGSGKT-IVAELAIWHAFKTFPGKKIVYIAPMKALVRER----VDDWRKKI----- 1209

Query: 141  FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
              +    +      +    + +  D+     T   +     +            +  DE 
Sbjct: 1210 TPVTGDKVVELTGDSLPDPKDV-HDATIVITTPEKFDGISRNWQTRKFVQDVSLIIMDEI 1268

Query: 201  S 201
             
Sbjct: 1269 H 1269


>gi|301633423|gb|ADK86977.1| DEAD/DEAH box helicase [Mycoplasma pneumoniae FH]
          Length = 450

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/186 (10%), Positives = 47/186 (25%), Gaps = 25/186 (13%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
           + +QP   Q   +     H                + +  G GKT + A  ++  +  +P
Sbjct: 22  NINQPTTIQQLAIPQFLQHQ------------NLIVHSPTGTGKTAVFAIPVIETLLKKP 69

Query: 107 GM---SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
                  + +A +    +                 ++ +   L +        + +Q   
Sbjct: 70  SKGTTQTLVVAPTRELAEQI----------KTTFINFAKHTHLKVVSLIGGIPIWQQLKQ 119

Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
           ++++   +                   H   +  DE     D   K  L           
Sbjct: 120 LENQPEIVVGTMGRVMDLLERGVIKFEHLEHLIIDEVDLMLDRGFKRKLFDLLGRIEKFE 179

Query: 224 WIMTSN 229
            I   +
Sbjct: 180 QIAVYS 185


>gi|299134435|ref|ZP_07027628.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
 gi|298591182|gb|EFI51384.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
          Length = 859

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/143 (8%), Positives = 35/143 (24%), Gaps = 13/143 (9%)

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
            H    +        + A++A    GK+ +    +   +      +I+ I  +   +   
Sbjct: 140 THYQFGLWRRLVAGERVAVAAPTSAGKSFVLQNFIAARLEGSSPQTIVYIVPTRALIAQV 199

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
                   +         ++ ++ +             +  +     ++           
Sbjct: 200 SADVRKLLIGHEGASSDVDVITIPVEAGQPLPRRAIYVLTQERLRMMLSAHPT------- 252

Query: 184 FVGPHNTHGMAVFNDEASGTPDI 206
                  H   +  DEA    D 
Sbjct: 253 ------FHAQIIIVDEAHSVGDG 269


>gi|238503900|ref|XP_002383182.1| DNA replication helicase Dna2, putative [Aspergillus flavus NRRL3357]
 gi|220690653|gb|EED47002.1| DNA replication helicase Dna2, putative [Aspergillus flavus NRRL3357]
          Length = 1571

 Score = 38.8 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 35/120 (29%), Gaps = 7/120 (5%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM--Q 144
            G GKTT  A ++        G S++  + + T + N L       + +L      ++  +
Sbjct: 1081 GTGKTTTIAHII--RALVSQGKSVLLTSYTHTAVDNILLKIRDDNIRILRIGAAAKVHPE 1138

Query: 145  SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                       +   + +    +   +   T        F             DEAS   
Sbjct: 1139 VQQFADLAAVPKNTIEELQGAYEDSQVVATTCLGIGHSVFSQ---RIFDYCIVDEASQIT 1195


>gi|170097585|ref|XP_001880012.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164645415|gb|EDR09663.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1066

 Score = 38.8 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 38/125 (30%), Gaps = 10/125 (8%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             ++A RG GK+     + +         +I   + S   LK  L+  V K +  L +  
Sbjct: 276 VTLTAARGRGKSAAL-GLAIAASLAHGYSNIFVTSPSPENLKT-LFDFVFKGMDALGYEE 333

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +          +   ++  ++  D +      +                    V  DE
Sbjct: 334 HLDYDIAQSTNPDFNKAIVRVNVFRDHRQTIQYIQPEDAHVLGQAE--------LVVIDE 385

Query: 200 ASGTP 204
           A+  P
Sbjct: 386 AAAIP 390


>gi|306818078|ref|ZP_07451809.1| superfamily II DNA or RNA helicase [Mobiluncus mulieris ATCC 35239]
 gi|304649042|gb|EFM46336.1| superfamily II DNA or RNA helicase [Mobiluncus mulieris ATCC 35239]
          Length = 920

 Score = 38.8 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/192 (10%), Positives = 38/192 (19%), Gaps = 24/192 (12%)

Query: 39  GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98
           G  G  LE  S    W       +  H      +              G GK+ +    +
Sbjct: 16  GKLGDSLEVLSGFEAWAESTGRPLYPHQLEAAEHIILEDRHLIAPTPTGSGKSLIGVAGI 75

Query: 99  LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
           LW ++   G      A  +  +    +  V     +    +   +       +       
Sbjct: 76  LWALAR--GGVAYYTAPLKALVSEKFFDLVD----LFGAANVGMITGDGSVNAAAPIICA 129

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII--NKSILGFFT 216
              +  +                             V  DE     D             
Sbjct: 130 TAEILANLALRWGDTL----------------DVDTVVMDEFHYYGDAERGWAWQAPLLL 173

Query: 217 ELNPNRFWIMTS 228
             N     +  +
Sbjct: 174 LPNTRFILMSAT 185


>gi|302343154|ref|YP_003807683.1| terminase [Desulfarculus baarsii DSM 2075]
 gi|301639767|gb|ADK85089.1| Terminase [Desulfarculus baarsii DSM 2075]
          Length = 539

 Score = 38.8 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 38/332 (11%), Positives = 68/332 (20%), Gaps = 66/332 (19%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GM 108
             WQ   + A+              + K  ++  R  GKT L A + L  +         
Sbjct: 60  RPWQKRIVRALY-----RTRGGRRVVRKALLTLPRKNGKTALAAALALAHLIGPEAEQRG 114

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            +   A    Q    ++AE+   +  +P              +            +    
Sbjct: 115 QVYSAAADRDQAS-IIFAEMEAVIGAVPEFA-ARCNVQRFRKAIEDDVTGSVYHALS--- 169

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228
                              H      V  DE +          L            ++ S
Sbjct: 170 -------------SDDRKAHGLSPSFVVYDELAQARTRHLFDNLDTGAGARREPLMVVIS 216

Query: 229 NTRRLNGWFYDIFN--------------------------IPLEDWKRYQIDTRTVEGID 262
              + +   + +                               + W             D
Sbjct: 217 T--QSSDQHHVMTELVDYGRKLLDGVIEDETFLPIIYAAPPDADPWSEDVWRACNPALGD 274

Query: 263 SGFHEGII------SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR-EAIDDLY 315
               E +        R      V     L + P +    FI            +      
Sbjct: 275 FRALEEMRQFAAQAKRIPAKQAVFESLYLNR-PTEVDGRFIAQADWNACAGPVDVEALRG 333

Query: 316 APLIMGCDIAGEGGDKTVVVFR---RGNIIEH 344
            P   G D+     D T +V      G  +  
Sbjct: 334 RPCWAGLDLGST-TDLTALVLYFPEDGGAVLP 364


>gi|162456248|ref|YP_001618615.1| PhoH family protein [Sorangium cellulosum 'So ce 56']
 gi|161166830|emb|CAN98135.1| PhoH family protein [Sorangium cellulosum 'So ce 56']
          Length = 370

 Score = 38.8 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 35/129 (27%), Gaps = 14/129 (10%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKT L   M +  +  R    II    +             +    L        + +
Sbjct: 141 GTGKTYLAMAMAVHALLERRVKRIILTRPA------------VEAGERLGFLPGDLAEKV 188

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
           + +    Y  L    M    K   +  R   E  P  F+     +   V  DEA      
Sbjct: 189 NPYLRPLYDAL--HDMMDADKAQGLVTRGQIEVAPLAFMRGRTLNDCFVILDEAQNATSD 246

Query: 207 INKSILGFF 215
             +  L   
Sbjct: 247 QMRMFLTRL 255


>gi|121605393|ref|YP_982722.1| type II secretion system protein E [Polaromonas naphthalenivorans
           CJ2]
 gi|120594362|gb|ABM37801.1| type II secretion system protein E [Polaromonas naphthalenivorans
           CJ2]
          Length = 321

 Score = 38.8 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 50/181 (27%), Gaps = 13/181 (7%)

Query: 62  VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET--- 118
           +     + +  +        I+ G G GKTTL   ++  +    P   I+ I +      
Sbjct: 135 MTELQATLIKTAVADRKNILIAGGTGSGKTTLANAVLNEISFISPDHRIVIIEDVLELQC 194

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
            +KNT++      L    +     +   +L               +  K      + ++ 
Sbjct: 195 SVKNTVF------LRTSANIDQVGLLRATLRLRP----DRIVVGEVRDKSALALLKAWNT 244

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
             P      H                +    +     +E       I  ++T R+     
Sbjct: 245 GHPGGIGTVHANSTGTALVRIGQLIQEAGVPAAPELISEAVNMVISIRRNSTGRIIDEVA 304

Query: 239 D 239
           +
Sbjct: 305 E 305


>gi|154495131|ref|ZP_02034136.1| hypothetical protein PARMER_04178 [Parabacteroides merdae ATCC
           43184]
 gi|154085681|gb|EDN84726.1| hypothetical protein PARMER_04178 [Parabacteroides merdae ATCC
           43184]
          Length = 750

 Score = 38.8 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 40/164 (24%), Gaps = 3/164 (1%)

Query: 68  SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127
             +  S P  F   +    G GKT  +    L          II +    + +  T    
Sbjct: 248 RKMAESLPGFFSLTV--PTGGGKTLASMAWALLHAVRYKKKRIIIVIPYTSIIVQTAAVL 305

Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ-SMGIDSKHYTITCRTYSEERPDTFVG 186
              + +     H   +Q  S           E     I          +    R      
Sbjct: 306 RDIFGAENVVEHHSNLQQDSNDERSPSLLATENWDAPIIVTTNVQFFESLYACRTSRCRK 365

Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
            HN     V  DEA   P      IL     L  +    +   T
Sbjct: 366 LHNICNSVVILDEAQMLPVEFLHPILDVLQSLQASFKASILFTT 409


>gi|145553323|ref|XP_001462336.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124430175|emb|CAK94963.1| unnamed protein product [Paramecium tetraurelia]
          Length = 960

 Score = 38.8 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 48/162 (29%), Gaps = 14/162 (8%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q + +  +       V       +  +ISA RG GK+          +      +I   A
Sbjct: 249 QAKIILGLIDSLQEKV-----FRYTISISAARGRGKSAAIGMAAAAALKLGF-SNIFVTA 302

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            S   L       +S   ++      F              +     + +++     T R
Sbjct: 303 PSPENLVTFFEFLISSLETL-----DFRQNQHFDVIQSTNPDFNNAVIRVNA---YKTHR 354

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT 216
            + +            +   VF DEA+  P    KS+ G  T
Sbjct: 355 QFVQYIQPQDFVKVANNADLVFCDEAAAIPIQFVKSMFGSHT 396


>gi|307700633|ref|ZP_07637661.1| DEAD/DEAH box helicase [Mobiluncus mulieris FB024-16]
 gi|307614163|gb|EFN93404.1| DEAD/DEAH box helicase [Mobiluncus mulieris FB024-16]
          Length = 920

 Score = 38.8 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/192 (10%), Positives = 38/192 (19%), Gaps = 24/192 (12%)

Query: 39  GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98
           G  G  LE  S    W       +  H      +              G GK+ +    +
Sbjct: 16  GKLGDSLEVLSGFEAWAESTGRPLYPHQLEAAEHIILEDRHLIAPTPTGSGKSLIGVAGI 75

Query: 99  LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
           LW ++   G      A  +  +    +  V     +    +   +       +       
Sbjct: 76  LWALAR--GGVAYYTAPLKALVSEKFFDLVD----LFGAANVGMITGDGSVNAAAPIICA 129

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII--NKSILGFFT 216
              +  +                             V  DE     D             
Sbjct: 130 TAEILANLALRWGDTL----------------DVDTVVMDEFHYYGDAERGWAWQAPLLL 173

Query: 217 ELNPNRFWIMTS 228
             N     +  +
Sbjct: 174 LPNTRFILMSAT 185


>gi|297571405|ref|YP_003697179.1| GTP-binding protein HSR1-related protein [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296931752|gb|ADH92560.1| GTP-binding protein HSR1-related protein [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 530

 Score = 38.8 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 4/96 (4%)

Query: 72  NSNPTIFKCAISAGRGIGKTTLNAWMM---LWLISTRPGMSIICIANSETQLKNTL-WAE 127
             NP +   AI+   G GK+++   ++   L  ++     +    A S  Q  + L W +
Sbjct: 43  EHNPDVCVVAIAGSTGSGKSSIVNALIGENLARVAATRPTTAQPCAVSTVQAHDLLSWLD 102

Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
           +++       +  F   S  +       +    +  
Sbjct: 103 ITQRFERPGLKDAFGATSDFVIVDLPDIDSTSAANR 138


>gi|260581112|ref|ZP_05848933.1| DNA helicase II [Haemophilus influenzae RdAW]
 gi|260092241|gb|EEW76183.1| DNA helicase II [Haemophilus influenzae RdAW]
          Length = 727

 Score = 38.8 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 81/302 (26%), Gaps = 29/302 (9%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIA 114
           E ++ ++      V           + AG G GKT +    + WLI+       SI+ + 
Sbjct: 6   ELLDGLNDKQREAVAAPLGNH---LVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 62

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            +            S       H+ +          +          +G+      +   
Sbjct: 63  FTNKAAAEMRHRIQSTLAKHAQHQLFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSE 122

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
                     +  HN        DE +  P       +    +               + 
Sbjct: 123 -DQLRLIKRLLKLHN-------FDEKAF-PPKQACWYINNKKDEGLR--------PNDIE 165

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294
            +        ++ ++ YQ        +D       +        +       +F    V+
Sbjct: 166 DFNDRQEREWIKIYQIYQDTCDRAGLVDFAELLIRVYELFEKKPLILQRYQQRFQHILVD 225

Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354
            F   N I+     + +      +++  D      D++ +   RG  IE+I  +      
Sbjct: 226 EFQDTNKIQYK-WIKILAGKTGQVMIVGD-----DDQS-IYGWRGAQIENIQKFLKDFKA 278

Query: 355 ET 356
           ET
Sbjct: 279 ET 280


>gi|291300875|ref|YP_003512153.1| DEAD/DEAH box helicase domain-containing protein [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570095|gb|ADD43060.1| DEAD/DEAH box helicase domain protein [Stackebrandtia nassauensis
           DSM 44728]
          Length = 832

 Score = 38.8 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/198 (10%), Positives = 46/198 (23%), Gaps = 27/198 (13%)

Query: 44  PLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS 103
           P   FS    W +E   ++             +     +S   G GK+ + A       +
Sbjct: 13  PDAIFSAFTDWAVEAGFSLYD-AQEEAVMEIVSGNNVIVSTPTGSGKSLIAAGA--HFAA 69

Query: 104 TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
                +    A  +  +    +     + +        +    +  P       +  ++ 
Sbjct: 70  LSENRTSFYTAPIKALVSEKFFDLCELFGTDNVGMMTGDASVNADAPLICCTAEVLANIA 129

Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPN 221
                Y    +                    V  DE      PD      +         
Sbjct: 130 FRDGDYADVGQ--------------------VVMDEFHFYAEPDRGWAWQVPLLELP--R 167

Query: 222 RFWIMTSNTRRLNGWFYD 239
             +++ S T     +F  
Sbjct: 168 TQFVLMSATLGDTSFFEK 185


>gi|222110400|ref|YP_002552664.1| ecoei r domain-containing protein [Acidovorax ebreus TPSY]
 gi|221729844|gb|ACM32664.1| EcoEI R domain protein [Acidovorax ebreus TPSY]
          Length = 827

 Score = 38.8 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 62/214 (28%), Gaps = 24/214 (11%)

Query: 38  WGIKGKPLEHFS-----QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTT 92
           W  +   +  F       P  +QL  +        +  +       +  +    G GKT 
Sbjct: 147 WSAEESRIAGFDYAPNKTPRYYQLNAVNRAVEAIAAGQD-------RVLLVMATGTGKTY 199

Query: 93  LNAWMMLWLIST-RPGMSIICIANSETQLKNTL---WAEVSKWLSML-PHRHWFEM--QS 145
             A+ ++W +        I+ +A+    +  T+   +      ++ L P+    E     
Sbjct: 200 -TAFQIIWRLWKSGAKKRILFLADRNILIDQTMVNDFRPFKGAMAKLSPNAKGVERVDAQ 258

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYT----ITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
            ++        + + +  +D  +          T +EE  + +          +  DE  
Sbjct: 259 GAVSVEDVDLAVNKTTKLVDKSYEIYLSLYQAVTGTEEERNIYKQFSPDFFDLIVVDECH 318

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
                 + +     T         +T+  +    
Sbjct: 319 RGSAAEDSAWRDILTYFAGATQIGLTATPKETKD 352


>gi|121594955|ref|YP_986851.1| EcoEI R domain-containing protein [Acidovorax sp. JS42]
 gi|120607035|gb|ABM42775.1| EcoEI R, C-terminal domain protein [Acidovorax sp. JS42]
          Length = 817

 Score = 38.8 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 62/214 (28%), Gaps = 24/214 (11%)

Query: 38  WGIKGKPLEHFS-----QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTT 92
           W  +   +  F       P  +QL  +        +  +       +  +    G GKT 
Sbjct: 147 WSAEESRIAGFDYAPNKTPRYYQLNAVNRAVEAIAAGQD-------RVLLVMATGTGKTY 199

Query: 93  LNAWMMLWLIST-RPGMSIICIANSETQLKNTL---WAEVSKWLSML-PHRHWFEM--QS 145
             A+ ++W +        I+ +A+    +  T+   +      ++ L P+    E     
Sbjct: 200 -TAFQIIWRLWKSGAKKRILFLADRNILIDQTMVNDFRPFKGAMAKLSPNAKGVERVDAQ 258

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYT----ITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
            ++        + + +  +D  +          T +EE  + +          +  DE  
Sbjct: 259 GAVSVEDVDLAVNKTTKLVDKSYEIYLSLYQAVTGTEEERNIYKQFSPDFFDLIVVDECH 318

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
                 + +     T         +T+  +    
Sbjct: 319 RGSAAEDSAWRDILTYFAGATQIGLTATPKETKD 352


>gi|269976795|ref|ZP_06183770.1| DEAD/DEAH box helicase domain protein [Mobiluncus mulieris 28-1]
 gi|269934992|gb|EEZ91551.1| DEAD/DEAH box helicase domain protein [Mobiluncus mulieris 28-1]
          Length = 920

 Score = 38.8 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/192 (10%), Positives = 38/192 (19%), Gaps = 24/192 (12%)

Query: 39  GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98
           G  G  LE  S    W       +  H      +              G GK+ +    +
Sbjct: 16  GKLGDSLEVLSGFEAWAESTGRPLYPHQLEAAEHIILEDRHLIAPTPTGSGKSLIGVAGI 75

Query: 99  LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
           LW ++   G      A  +  +    +  V     +    +   +       +       
Sbjct: 76  LWALAR--GGVAYYTAPLKALVSEKFFDLVD----LFGAANVGMITGDGSVNAAAPIICA 129

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII--NKSILGFFT 216
              +  +                             V  DE     D             
Sbjct: 130 TAEILANLALRWGDTL----------------DVDTVVMDEFHYYGDAERGWAWQAPLLL 173

Query: 217 ELNPNRFWIMTS 228
             N     +  +
Sbjct: 174 LPNTRFILMSAT 185


>gi|313892421|ref|ZP_07826011.1| helicase C-terminal domain protein [Dialister microaerophilus UPII
           345-E]
 gi|313119103|gb|EFR42305.1| helicase C-terminal domain protein [Dialister microaerophilus UPII
           345-E]
          Length = 526

 Score = 38.8 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 40/140 (28%), Gaps = 12/140 (8%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q + + AV       +N       +  I    G+GKT   A +    I    G  ++
Sbjct: 4   RPYQEKAVNAV-------LNEWESGRKRTLIVMATGLGKTITFANIAKKRIEN--GERVL 54

Query: 112 CIANSE---TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            +A+ E    Q K+ ++   + + +            L +          +  +    K 
Sbjct: 55  VLAHREELLEQAKDKIFKVANIFCAKEKANETCLNSFLPITVGSVQTLQKKSRLERFPKD 114

Query: 169 YTITCRTYSEERPDTFVGPH 188
           Y  T                
Sbjct: 115 YFKTIIVDEAHHALADSYQR 134


>gi|157374029|ref|YP_001472629.1| ATP-dependent RNA helicase SrmB [Shewanella sediminis HAW-EB3]
 gi|157316403|gb|ABV35501.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 408

 Score = 38.8 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 52/238 (21%), Gaps = 22/238 (9%)

Query: 52  HRWQLEFMEAVDVH----CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107
               LE ++A+  H                      A  G GKT       L  +   P 
Sbjct: 9   DPILLESLKAMGHHKPTTIQQQAIPLAMDQRDILARAPTGTGKTASFLLPALQHLIDFPR 68

Query: 108 M-----SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
                  I+ +  +          E++  +         E+   ++  +G       Q  
Sbjct: 69  RFSGQARILILTPT---------RELASQIHRYASHLASELDFNTVIITGG-VPYGPQED 118

Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222
            +      +                +      +  DEA    D+   + +      +  R
Sbjct: 119 ALKGNVDILVATPGRLMEYLDKGQFNAEEVEMLVIDEADRMLDMGFSAAVETLAIESVGR 178

Query: 223 FWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280
              M  +            +  L D  + +         +       I          
Sbjct: 179 KQTMLFSATLEGSDVGRFSHQLLTDPVKVE---AEAPRSEKAKIHQWIHIADNKDHKF 233


>gi|156937309|ref|YP_001435105.1| Reverse gyrase [Ignicoccus hospitalis KIN4/I]
 gi|156566293|gb|ABU81698.1| Reverse gyrase [Ignicoccus hospitalis KIN4/I]
          Length = 1259

 Score = 38.8 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 9/118 (7%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           +I A  G+GK+TL A + +  +S +       I  +   + + ++ +VS +         
Sbjct: 105 SIVAPTGMGKSTLGALLSV-YLSHKKKKKSYIIVPTTPLV-DMMFRKVSAFAEA------ 156

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
           F ++++  H     ++  E    + S        T S    +      N     VF D
Sbjct: 157 FGVRAVYFHSKMSPSQRKEMKERLLSGD-FDVLITTSRFLINNLDLLKNYEFGFVFVD 213


>gi|77552422|gb|ABA95219.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 909

 Score = 38.8 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/68 (14%), Positives = 18/68 (26%)

Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275
                    +   NTR  +G+    F+ P  +W             +  F +   +    
Sbjct: 110 AGQTSKFANVTIGNTRDGSGYGRTGFHCPNGEWVTCFCSWCWHGRSEVYFGKDRAAEERA 169

Query: 276 DSDVARIE 283
                R E
Sbjct: 170 ACPFYRQE 177


>gi|113969134|ref|YP_732927.1| ATP-dependent RNA helicase SrmB [Shewanella sp. MR-4]
 gi|113883818|gb|ABI37870.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 420

 Score = 38.8 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/219 (9%), Positives = 46/219 (21%), Gaps = 20/219 (9%)

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-----SIICIANSET 118
                               A  G GKT       L  +   P        ++ +  +  
Sbjct: 25  TTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQHLIDFPRRYSGQARVLILTPT-- 82

Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
                   E++  +      H    Q L++           Q   +      +       
Sbjct: 83  -------RELASQIHRYAC-HLATDQGLNIAIITGGVPYAPQEEALKGNIDILVATPGRL 134

Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWF 237
                           +  DEA    D+   +++     E    +  ++ S T   +G  
Sbjct: 135 MEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQNMLFSATLEGSGVI 194

Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLD 276
                +  +  +            +       I      
Sbjct: 195 RFAREVLNDPIEID----VDAPRKEKAKIHQWIHLADDK 229


>gi|194769264|ref|XP_001966726.1| GF19127 [Drosophila ananassae]
 gi|190618247|gb|EDV33771.1| GF19127 [Drosophila ananassae]
          Length = 1004

 Score = 38.8 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 58/207 (28%), Gaps = 22/207 (10%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            +++A RG GK+     + +        ++I   +     L   L+  V K    L ++ 
Sbjct: 275 MSLTAARGRGKSAAL-GLSIAAAVAFGYVNIYVTSPHPENLIT-LFEFVLKGFDALEYQE 332

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +   +    + +   ++  ++   S+              +            V  DE
Sbjct: 333 HADYTIIRSTNAEYKKAIIRINITRSSRQTIQYIAPSDTHLLNAAD--------LVLIDE 384

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
           A+  P       L    ++       M S         Y+     L      Q+      
Sbjct: 385 AAAIP-------LPLVKKMIGPCLIFMASTING-----YEGTGRSLSLKLISQLQKENNA 432

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILG 286
                  E I  +   D +   I +L 
Sbjct: 433 RPPLKLEESIRYQDNDDVEKWLINLLC 459


>gi|164654858|ref|YP_001531172.2| Nonstructural protein NS3 [Dengue virus 3]
          Length = 619

 Score = 38.8 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 197 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 250

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                       E +             T     P         +   +  DEA    D 
Sbjct: 251 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 292

Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263
            + +  G+ +            MT+        F        ++ +     +        
Sbjct: 293 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 349

Query: 264 GFHEG 268
            +   
Sbjct: 350 EWITD 354


>gi|269954927|ref|YP_003324716.1| Superfamily I DNA and RNA helicase and helicase subunits-like protein
            [Xylanimonas cellulosilytica DSM 15894]
 gi|269303608|gb|ACZ29158.1| Superfamily I DNA and RNA helicase and helicase subunits-like protein
            [Xylanimonas cellulosilytica DSM 15894]
          Length = 1324

 Score = 38.8 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/174 (11%), Positives = 43/174 (24%), Gaps = 10/174 (5%)

Query: 80   CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL-SMLPHR 138
             A+    G GKT L A ++   +  R    +  +A S   ++N L   V   L   L  +
Sbjct: 947  LAVQGPPGTGKTYLAARVIR-TLVERHHWRVGVVAQSHAVVENVLDGVVGAGLDRDLVGK 1005

Query: 139  HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               + ++  +  +         +    +  + +    +     D            +  D
Sbjct: 1006 QPGDPEADLVFTAVPRKGYAAFADERATSGFVLGGTAWDFVAADR---VPRRSLDLLVVD 1062

Query: 199  EASGTP-----DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247
            EA              +              +               +     D
Sbjct: 1063 EAGQYSLGTTIAASVAARNLLLLGDPQQLPQVSQGTHPEPVDTSALGWVSAGHD 1116


>gi|330872555|gb|EGH06704.1| putative ATP-binding protein [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 660

 Score = 38.8 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 37/120 (30%), Gaps = 6/120 (5%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKT + A   L L    P   ++ + ++   +K+        +  +  +     + + 
Sbjct: 225 GSGKTLIAANRALILARRFPDQQVLMLIHNVPVVKDLKHRLQRVYGEIPAN---LTIITA 281

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                  +  L  Q   + +++  +       +  +            +  DE +   D 
Sbjct: 282 LSWIKKQWRTLFIQHPKMPNRNKEVESLIQHFKDLEYPDLKPGKA---LLIDEFNFINDT 338


>gi|326484576|gb|EGE08586.1| DNA replication ATP-dependent helicase dna2 [Trichophyton equinum CBS
            127.97]
          Length = 1596

 Score = 38.8 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 32/120 (26%), Gaps = 7/120 (5%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS--MLPHRHWFEMQ 144
            G GKTT  A ++        G S++  + + T + N L            L        +
Sbjct: 1094 GTGKTTTIAQII--RALVSQGKSVLLTSYTHTAVDNILLKIRDDKFRILRLGTPSKVHPE 1151

Query: 145  SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                       +   + +    ++  +   T            +         DEAS   
Sbjct: 1152 VQQFAEMAATPKNTIEELEDSYENSKVVATTCLGVNH---RIFNTRTFDYCIVDEASQIT 1208


>gi|326475655|gb|EGD99664.1| DNA replication helicase Dna2 [Trichophyton tonsurans CBS 112818]
          Length = 1596

 Score = 38.8 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 32/120 (26%), Gaps = 7/120 (5%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS--MLPHRHWFEMQ 144
            G GKTT  A ++        G S++  + + T + N L            L        +
Sbjct: 1094 GTGKTTTIAQII--RALVSQGKSVLLTSYTHTAVDNILLKIRDDKFRILRLGTPSKVHPE 1151

Query: 145  SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                       +   + +    ++  +   T            +         DEAS   
Sbjct: 1152 VQQFAEMAATPKNTIEELEDSYENSKVVATTCLGVNH---RIFNTRTFDYCIVDEASQIT 1208


>gi|302663024|ref|XP_003023160.1| hypothetical protein TRV_02682 [Trichophyton verrucosum HKI 0517]
 gi|291187142|gb|EFE42542.1| hypothetical protein TRV_02682 [Trichophyton verrucosum HKI 0517]
          Length = 1596

 Score = 38.8 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 32/120 (26%), Gaps = 7/120 (5%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS--MLPHRHWFEMQ 144
            G GKTT  A ++        G S++  + + T + N L            L        +
Sbjct: 1094 GTGKTTTIAQII--RALVSQGKSVLLTSYTHTAVDNILLKIRDDKFRILRLGTPSKVHPE 1151

Query: 145  SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                       +   + +    ++  +   T            +         DEAS   
Sbjct: 1152 VQQFAEMAATPKNTIEELEDSYENSKVVATTCLGVNH---RIFNTRTFDYCIVDEASQIT 1208


>gi|302502578|ref|XP_003013253.1| hypothetical protein ARB_00438 [Arthroderma benhamiae CBS 112371]
 gi|291176816|gb|EFE32613.1| hypothetical protein ARB_00438 [Arthroderma benhamiae CBS 112371]
          Length = 1597

 Score = 38.8 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 32/120 (26%), Gaps = 7/120 (5%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS--MLPHRHWFEMQ 144
            G GKTT  A ++        G S++  + + T + N L            L        +
Sbjct: 1095 GTGKTTTIAQII--RALVSQGKSVLLTSYTHTAVDNILLKIRDDKFRILRLGTPSKVHPE 1152

Query: 145  SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                       +   + +    ++  +   T            +         DEAS   
Sbjct: 1153 VQQFAEMAATPKNTIEELEDSYENSKVVATTCLGVNH---RIFNTRTFDYCIVDEASQIT 1209


>gi|300361581|ref|ZP_07057758.1| possible type I site-specific deoxyribonuclease [Lactobacillus
           gasseri JV-V03]
 gi|300354200|gb|EFJ70071.1| possible type I site-specific deoxyribonuclease [Lactobacillus
           gasseri JV-V03]
          Length = 1086

 Score = 38.8 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 50/150 (33%), Gaps = 15/150 (10%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q+E +++++               +  ++   G GKT     +M  L+  +    I+
Sbjct: 386 RDYQVEAIKSIEEAIKDGKK-------RILLAMATGTGKTRTAIALMYRLLKHKRARRIL 438

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            + +  +  + T  A     +  L   + + ++ L         ++   ++    K    
Sbjct: 439 YLVDRNSLGQQTADAIKDNKIGNLSISNIYGVKELKDKLPDASTKIQIATVQGMIKRLFY 498

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
                +EE+P             +  DEA 
Sbjct: 499 NDS--NEEKPSVGQY------DFIIVDEAH 520


>gi|222475988|ref|YP_002564509.1| type III restriction protein res subunit [Halorubrum lacusprofundi
           ATCC 49239]
 gi|222454359|gb|ACM58623.1| type III restriction protein res subunit [Halorubrum lacusprofundi
           ATCC 49239]
          Length = 466

 Score = 38.8 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/198 (11%), Positives = 50/198 (25%), Gaps = 39/198 (19%)

Query: 38  WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97
           +           +P  +Q   ++A   H               ++    G GKT L    
Sbjct: 72  YPDLDLTQALHIEPRDYQQAALDAWIDHDRRG-----------SVVLPTGSGKTFLG--- 117

Query: 98  MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
                    G+S + +  +           +++W + L +               +  +L
Sbjct: 118 --LQAIADAGVSTLVVTPTID--------LMNQWHATLTN--------------AFGDQL 153

Query: 158 LEQSMGIDSKHYTITCRTYSE-ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT 216
            E    +    + +T  T +  +    +V  +      +  DE    P    + I     
Sbjct: 154 TEPVGVLGGGSHDVTAITVTTYDSAYRYVNEYGDQFGLLVVDEEHHLPAPTYRQIPEMII 213

Query: 217 ELNPNRFWIMTSNTRRLN 234
                            +
Sbjct: 214 APYRLGLTATYERPDGKH 231


>gi|192359134|ref|YP_001980830.1| DbpA RNA binding domain family [Cellvibrio japonicus Ueda107]
 gi|190685299|gb|ACE82977.1| DbpA RNA binding domain family [Cellvibrio japonicus Ueda107]
          Length = 469

 Score = 38.8 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/196 (11%), Positives = 49/196 (25%), Gaps = 18/196 (9%)

Query: 81  AISAGR--------GIGKTTLNAWMMLWLISTRPGM-SIICIANSETQLKNTLWAEVSKW 131
            + AGR        G GKT      +L  +         + +  +  +L + +  E+ + 
Sbjct: 48  WVLAGRDLIAQAKTGSGKTAAFGIGLLEKLQVDSFAVQALVLCPT-RELADQVAKELRRL 106

Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191
                    F      L   G  A   +    ++   + +                H   
Sbjct: 107 AR-------FTHNIKILTLCGGVAIGPQLG-SLERGAHIVVGTPGRIVDHLRKGSLHLDR 158

Query: 192 GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY 251
              +  DEA    D+     +        +    +  +                +  +  
Sbjct: 159 LQQLVLDEADRMLDMGFADDINTVIASANSERQTLLFSATYPANIQQMSARYQRDPVRVT 218

Query: 252 QIDTRTVEGIDSGFHE 267
                T + I   F+E
Sbjct: 219 VESLHTSQQIRQHFYE 234


>gi|156549148|ref|XP_001607707.1| PREDICTED: similar to MGC148591 protein [Nasonia vitripennis]
          Length = 1028

 Score = 38.8 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/251 (11%), Positives = 69/251 (27%), Gaps = 28/251 (11%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q + +             S       +++A RG GK+      +   ++     +I   +
Sbjct: 254 QAKVLLKFIEAISEKTLRST-----ISLTAARGRGKSAALGLAIAGAVAFGY-SNIYITS 307

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            S   LK   +  +SK    L ++   + +        +    +  ++  D +       
Sbjct: 308 PSPENLKTV-FEFISKGFEALNYQEHTDYEFFQSTNPEFNQATIRVNVFRDHRQTIQYIH 366

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
               +   +           +  DEA+  P    K++LG +       F   T N     
Sbjct: 367 PTDAKGKLSLA-------ELLVIDEAAAIPLPHVKAMLGPYLT-----FMASTINGYEGT 414

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF----HEGIISRYGLDSDVARI-----EIL 285
           G    +  +     +  Q ++   +  D          +      +    R      + L
Sbjct: 415 GRSLTLKLLNQLRAQTVQTNSVNKQEKDLMAKAVIGRELQELVLEEPIRYRAGDSIEKWL 474

Query: 286 GQFPQQEVNNF 296
                 +    
Sbjct: 475 CDLLCLDATTV 485


>gi|119357244|ref|YP_911888.1| CRISPR-associated helicase Cas3 [Chlorobium phaeobacteroides DSM
           266]
 gi|119354593|gb|ABL65464.1| CRISPR-associated helicase, Cas3 family [Chlorobium
           phaeobacteroides DSM 266]
          Length = 667

 Score = 38.8 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 46/181 (25%), Gaps = 17/181 (9%)

Query: 39  GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98
           G    P+         + E +      C     +  P +F   +    G GKT  +    
Sbjct: 147 GALDTPVNRA------RKEILRE----CRDKGRSLEPGLFSLTV--PTGGGKTLASMAFA 194

Query: 99  LWLISTRPGMSIICIANSETQLKNT--LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
           L          II      + ++ T  ++ EV    ++L H    +    +         
Sbjct: 195 LEHAIRHGKKRIIVAIPYTSIIEQTAAVYREVFGDDTVLEHHSNLDPARETAESRLATEN 254

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT 216
                +   +     +               HN     V  DE    P    + I+    
Sbjct: 255 WDAPIIVTTNVQLFESLFAAR---SSACRKLHNIVNSVVVLDETQMLPTDFLQPIVSVIK 311

Query: 217 E 217
            
Sbjct: 312 S 312


>gi|33300854|ref|NP_877482.1| putative DNA maturase B [Pseudomonas phage phiKMV]
 gi|195546750|ref|YP_002117828.1| DNA maturase B [Pseudomonas phage PT2]
 gi|33284825|emb|CAD44234.1| putative DNA maturase B [Enterobacteria phage phiKMV]
 gi|165880759|gb|ABY71014.1| DNA maturase B [Pseudomonas phage PT2]
          Length = 601

 Score = 38.8 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 48/168 (28%), Gaps = 17/168 (10%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +      + N       K  ++A RG  K+T+    ++W I+  P    + ++ S  + 
Sbjct: 41  DIADFMQDSPN-------KAMVAAQRGEAKSTIACIYVVWCITQNPATRAMLVSGSGDKA 93

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLS-LHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
           +             L  +       L+ L P     +    +    +       ++ S  
Sbjct: 94  EEN---------GQLITKLIMHWDLLAYLRPEARMGDRTSATSFDVNWALKGVEKSASIN 144

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
                          +  D+   T + +  +     T  +     I T
Sbjct: 145 CIGITAALQGYRADILIPDDIETTKNGLTATERAKLTRQSQEFTSICT 192


>gi|269216046|ref|ZP_06159900.1| conserved hypothetical protein [Slackia exigua ATCC 700122]
 gi|269130305|gb|EEZ61383.1| conserved hypothetical protein [Slackia exigua ATCC 700122]
          Length = 402

 Score = 38.8 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/175 (12%), Positives = 48/175 (27%), Gaps = 27/175 (15%)

Query: 54  WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG-MSII- 111
           ++ E +  +          + P  F   +   R  GK+T      +W          I+ 
Sbjct: 13  YEREIVSTIA------SRMNEPRRFMQIVMGPRQTGKST-----AIWQALAHADIPRIVE 61

Query: 112 ----------CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL---L 158
                      +     + +N +  +  + + ++     +     ++    W  +    +
Sbjct: 62  EVTFRGESPDWVRAHWQRARNLIQGDQKRAV-LVLDEIQYVSNWSAVVKELWDEDARAGI 120

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213
           +  + +     T+     SE     F   H  H       EA G          G
Sbjct: 121 DLRVVLSGSSATLIQNGLSESLAGRFELIHCPHWTYQECREAFGYSLDEFLYFGG 175


>gi|262375118|ref|ZP_06068352.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter lwoffii SH145]
 gi|262310131|gb|EEY91260.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter lwoffii SH145]
          Length = 593

 Score = 38.8 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 36/154 (23%), Gaps = 18/154 (11%)

Query: 62  VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121
           +                   IS G G GKT   A M+  L    P + I   A +    +
Sbjct: 125 LSDPQQKLALEMVARQALNIISGGPGTGKTYTLAHMIAVLHEALPNIRIAMAAPTGKAAQ 184

Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181
                        L      E +   L             +G   +      +       
Sbjct: 185 ----RMKEALQKALHSEALQEFELEQLKQLQPVTLHRLLGLGTRGQPRFHAKQPLP---- 236

Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
                        +  DEAS     +++ +L   
Sbjct: 237 ----------YDVIVVDEASMLDLNLSQMLLAAV 260


>gi|89274860|gb|ABD65875.1| polyprotein [Dengue virus 3]
          Length = 3390

 Score = 38.8 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/184 (11%), Positives = 44/184 (23%), Gaps = 28/184 (15%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKT      ++     R  +  + +A +       + AE+ + L  LP R+       
Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                        E +             T     P         +   +  DEA  T   
Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHFTDPA 1766

Query: 207  INKS--ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264
               +   +     +       MT+        F        ++ +     +         
Sbjct: 1767 SIPARGYISTRVGMGETAAIFMTATPPGTTEAFPQSNAPIQDEERDIPERSWNSGN---E 1823

Query: 265  FHEG 268
            +   
Sbjct: 1824 WITD 1827


>gi|332363219|gb|EGJ41004.1| hypothetical protein HMPREF9380_0379 [Streptococcus sanguinis SK49]
          Length = 892

 Score = 38.8 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/197 (10%), Positives = 46/197 (23%), Gaps = 24/197 (12%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q   +E    +      +         ISA  G GKTTL    +      R     +
Sbjct: 11  RDYQKRILERSRDYMADGQVH---------ISAAPGSGKTTLGIEFI-----RRFDKPAL 56

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +  +   ++      +              +      P        +      +++   
Sbjct: 57  ILVPTI-TIREQWADRIKTAFLSHASEAERLVSQDLKTPKMITIATYQALHSALTQYKVK 115

Query: 172 TCRTYSEER-PDTFVGPHNT--------HGMAVFNDEASGTPDIINKSILGFFTELNPNR 222
                 EE   +                    +  DE     +   KS+  F  + +   
Sbjct: 116 LSNLSEEEVLAENVDFSQFDLVNKLQEIGLGTLCLDECHHLRNEWWKSLEEFRDKYSQLN 175

Query: 223 FWIMTSNTRRLNGWFYD 239
              +T+     +     
Sbjct: 176 LIALTATPPYDSEPALW 192


>gi|251792312|ref|YP_003007037.1| type III restriction enzyme, res subunit family [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533704|gb|ACS96950.1| type III restriction enzyme, res subunit family [Aggregatibacter
           aphrophilus NJ8700]
          Length = 762

 Score = 38.8 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 40/144 (27%), Gaps = 2/144 (1%)

Query: 56  LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115
            +F +             +    +  + +  G GKT +    +   +   P       + 
Sbjct: 7   KDFQQQTVDFLLEKTTEQHKKQQQIIVKSPTGSGKTIILISYIENYLRNYPNTIFCWFSV 66

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
            +  L+     ++ ++   LP  +  ++ +        Y    E      +     + R 
Sbjct: 67  GKGDLEEQSKEKMERFSPTLPTGNIADVLNQGFECGTTYFINWETITKKGNLALKDSERK 126

Query: 176 YSEERPDTFVGPHNTHGMAVFNDE 199
             ++         N     V  DE
Sbjct: 127 NIKQHI--ADAHRNNKQFIVIIDE 148


>gi|126303557|ref|XP_001373679.1| PREDICTED: similar to activating signal cointegrator 1 complex
            subunit 3-like 1 isoform 2 [Monodelphis domestica]
          Length = 2138

 Score = 38.8 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 15/161 (9%)

Query: 54   WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +Q +F     +     + V NS+  +F   + A  G GKT    + +L ++        +
Sbjct: 1323 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1379

Query: 112  CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             I   E   +         W      R                    +  +         
Sbjct: 1380 YITPMEALAEQVY----MDWYEKFQDRL------NKKVVLLTGETSTDLKLLGKGNIIIS 1429

Query: 172  TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212
            T   +           +  +      DE           + 
Sbjct: 1430 TPEKWDILSRRWKQRKNVQNVNLFVVDEVHLIGGENGPVLE 1470


>gi|126303555|ref|XP_001373661.1| PREDICTED: similar to activating signal cointegrator 1 complex
            subunit 3-like 1 isoform 1 [Monodelphis domestica]
          Length = 2136

 Score = 38.8 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 15/161 (9%)

Query: 54   WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +Q +F     +     + V NS+  +F   + A  G GKT    + +L ++        +
Sbjct: 1321 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1377

Query: 112  CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             I   E   +         W      R                    +  +         
Sbjct: 1378 YITPMEALAEQVY----MDWYEKFQDRL------NKKVVLLTGETSTDLKLLGKGNIIIS 1427

Query: 172  TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212
            T   +           +  +      DE           + 
Sbjct: 1428 TPEKWDILSRRWKQRKNVQNVNLFVVDEVHLIGGENGPVLE 1468


>gi|8778728|gb|AAF79736.1|AC005106_17 T25N20.11 [Arabidopsis thaliana]
          Length = 1048

 Score = 38.8 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 48/165 (29%), Gaps = 18/165 (10%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKT      ++ L +T+    ++  A S +   + L   +      +     F + + 
Sbjct: 470 GTGKTMTLVEAIVQLYTTQRNARVLVCAPSNSAADHILEKLLCLEGVRIKDNEIFRLNAA 529

Query: 147 SLHPSGWYAELLE-------------QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
           +        E++                     K    T  + S    +     H TH +
Sbjct: 530 TRSYEEIKPEIIRFCFFDELIFKCPPLKALTRYKLVVSTYMSASLLNAEGVNRGHFTHIL 589

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
               DEA    +  N   +            ++  + R+L    Y
Sbjct: 590 L---DEAGQASEPENMIAVSNLCL--TETVVVLAGDPRQLGPVIY 629


>gi|15220521|ref|NP_172037.1| SDE3 (SILENCING DEFECTIVE); RNA helicase [Arabidopsis thaliana]
 gi|50401594|sp|Q8GYD9|SDE3_ARATH RecName: Full=Probable RNA helicase SDE3; AltName: Full=Silencing
           defective protein 3
 gi|26450472|dbj|BAC42350.1| unknown protein [Arabidopsis thaliana]
 gi|332189722|gb|AEE27843.1| putative RNA helicase SDE3 [Arabidopsis thaliana]
          Length = 1002

 Score = 38.8 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 48/165 (29%), Gaps = 18/165 (10%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKT      ++ L +T+    ++  A S +   + L   +      +     F + + 
Sbjct: 424 GTGKTMTLVEAIVQLYTTQRNARVLVCAPSNSAADHILEKLLCLEGVRIKDNEIFRLNAA 483

Query: 147 SLHPSGWYAELLE-------------QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
           +        E++                     K    T  + S    +     H TH +
Sbjct: 484 TRSYEEIKPEIIRFCFFDELIFKCPPLKALTRYKLVVSTYMSASLLNAEGVNRGHFTHIL 543

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238
               DEA    +  N   +            ++  + R+L    Y
Sbjct: 544 L---DEAGQASEPENMIAVSNLCL--TETVVVLAGDPRQLGPVIY 583


>gi|297793665|ref|XP_002864717.1| hypothetical protein ARALYDRAFT_919354 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297310552|gb|EFH40976.1| hypothetical protein ARALYDRAFT_919354 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 2112

 Score = 38.8 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 11/80 (13%)

Query: 45   LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            L  FS  +  Q +    +    +              + A  G GKT      ML L ST
Sbjct: 1306 LYKFSHFNPIQTQIFHVLYHTDN-----------NVLVGAPTGSGKTISAELAMLRLFST 1354

Query: 105  RPGMSIICIANSETQLKNTL 124
            +P M ++ IA  +  ++  +
Sbjct: 1355 QPDMKVVYIAPLKAIVRERM 1374


>gi|92116726|ref|YP_576455.1| DEAD/DEAH box helicase-like [Nitrobacter hamburgensis X14]
 gi|91799620|gb|ABE61995.1| DEAD/DEAH box helicase-like protein [Nitrobacter hamburgensis X14]
          Length = 858

 Score = 38.8 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/143 (8%), Positives = 35/143 (24%), Gaps = 13/143 (9%)

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
            H    +        + A++A    GK+ +    +   +      +I+ I  +   +   
Sbjct: 140 THYQFGLWRRLVAGERVAVAAPTSAGKSFVLQNFIAARLEGSSPQTIVYIVPTRALIAQV 199

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
                   +         ++ ++ +             +  +     ++           
Sbjct: 200 SADVRKLLIIDDGTSGDVDVITVPVEAGQPLPRRAIYVLTQERLRMMLSAHPT------- 252

Query: 184 FVGPHNTHGMAVFNDEASGTPDI 206
                  H   +  DEA    D 
Sbjct: 253 ------FHAQIIIVDEAHSVGDG 269


>gi|30697481|ref|NP_200922.2| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|332010042|gb|AED97425.1| U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana]
          Length = 2146

 Score = 38.8 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 11/80 (13%)

Query: 45   LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            L  FS  +  Q +    +    +              + A  G GKT      ML L ST
Sbjct: 1339 LYKFSHFNPIQTQIFHVLYHTDN-----------NVLVGAPTGSGKTISAELAMLRLFST 1387

Query: 105  RPGMSIICIANSETQLKNTL 124
            +P M ++ IA  +  ++  +
Sbjct: 1388 QPDMKVVYIAPLKAIVRERM 1407


>gi|9759460|dbj|BAB10376.1| RNA helicase [Arabidopsis thaliana]
 gi|332010043|gb|AED97426.1| U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana]
          Length = 2157

 Score = 38.8 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 11/80 (13%)

Query: 45   LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            L  FS  +  Q +    +    +              + A  G GKT      ML L ST
Sbjct: 1350 LYKFSHFNPIQTQIFHVLYHTDN-----------NVLVGAPTGSGKTISAELAMLRLFST 1398

Query: 105  RPGMSIICIANSETQLKNTL 124
            +P M ++ IA  +  ++  +
Sbjct: 1399 QPDMKVVYIAPLKAIVRERM 1418


>gi|330957698|gb|EGH57958.1| ATP-dependent DNA helicase DinG [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 714

 Score = 38.8 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 27/101 (26%), Gaps = 5/101 (4%)

Query: 51  PHRWQL----EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
           P   Q     E    +           +      A+ AG G GKT   A   +       
Sbjct: 25  PRYGQRLMIAEVARVLGDIDTDEEGRRSGDPAVVAVEAGTGTGKTVAYAIASIPTAKAAG 84

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
              +I  A    Q +  ++ ++   +        F +    
Sbjct: 85  KRLVIATATVALQ-EQIVYKDLPDLMRNSGLNFTFALAKGR 124


>gi|313611711|gb|EFR86253.1| phage terminase, large subunit, pbsx family [Listeria monocytogenes
           FSL F2-208]
          Length = 466

 Score = 38.8 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/256 (8%), Positives = 68/256 (26%), Gaps = 28/256 (10%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
                GR   K+++ +  ++      P  +++C+      L  +++ ++   L  +    
Sbjct: 59  IIAKGGRSSMKSSVISLKLVEKKMANPQSNMVCLRKVANTLYKSVYQQIKWALYEMGVAD 118

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
            F+     +             +  +              +  +   P   +   ++ +E
Sbjct: 119 QFKFGKSPMEI-----------IHKEWGTGFYFSGCDDPAKLKSMKIPVG-YVSGLWFEE 166

Query: 200 AS------GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL--EDWKRY 251
            +          + +  I     +      ++  +  R    W  +  +     +D+  +
Sbjct: 167 LAEFSGVTDIDVVEDTFIREDLPDGQEVTIYMSFNPPRNPYEWVNEYVDSKRSDDDYLIH 226

Query: 252 QIDTRT--VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309
                      +     + I      D D  R   LG+      N +         +   
Sbjct: 227 HTTYLDDEKGFLSKQIIKKIEKYKKNDLDYYRWMYLGEVIGLGDNVY------NMNLFHP 280

Query: 310 AIDDLYAPLIMGCDIA 325
                    ++  D A
Sbjct: 281 LKAIPADDRLILIDFA 296


>gi|325983747|ref|YP_004296148.1| P-type conjugative transfer ATPase TrbB [Nitrosomonas sp. AL212]
 gi|325533266|gb|ADZ27986.1| P-type conjugative transfer ATPase TrbB [Nitrosomonas sp. AL212]
          Length = 319

 Score = 38.8 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 19/52 (36%)

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
              +  +        +  G G GKTTL   ++  ++   P   I  + ++  
Sbjct: 138 RDVIKEAVRKHRNILVIGGTGSGKTTLINAIINEMVLCDPDERIFILEDTGE 189


>gi|322504579|emb|CAM37954.2| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 1080

 Score = 38.8 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 10/125 (8%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
           C ++AGRG GK+     M +     +   +I+C A +   +  TL+    + L  L +R 
Sbjct: 305 CVVTAGRGRGKSAAL-GMTVAGAIAQGYSNIMCTAPTPENV-QTLFEFAIRGLKELGYRE 362

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             + ++L      +    +  ++  + +                              DE
Sbjct: 363 RTDFEALQGVSEEFAKCFIRINVFREHRQTLQFVSAT--------DTAKFAQAEVCVIDE 414

Query: 200 ASGTP 204
           A+  P
Sbjct: 415 AAALP 419


>gi|146329169|ref|YP_001209947.1| hypothetical protein DNO_1061 [Dichelobacter nodosus VCS1703A]
 gi|146232639|gb|ABQ13617.1| conserved hypothetical protein [Dichelobacter nodosus VCS1703A]
          Length = 477

 Score = 38.8 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 5/111 (4%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW--AEVSKWLSMLPHRH 139
           I   RG GK+TL A  ++WL+       I+ +A     +   L     V ++L  LP   
Sbjct: 132 ILGARGTGKSTLLAEKIIWLVQQNIAP-ILVVAPFLANINRILTLPQSVQRFLRFLPPDE 190

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR--TYSEERPDTFVGPH 188
              +   + H     A     +  +   H+       T +E    +    H
Sbjct: 191 ACRLLPTAQHLIIDEAAACAPAQLLQLCHHYSNFTLATTTEGYEGSANTFH 241


>gi|170720332|ref|YP_001748020.1| ATP-dependent DNA helicase DinG [Pseudomonas putida W619]
 gi|169758335|gb|ACA71651.1| helicase c2 [Pseudomonas putida W619]
          Length = 714

 Score = 38.8 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/184 (10%), Positives = 49/184 (26%), Gaps = 17/184 (9%)

Query: 51  PHRWQL----EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
           P   Q     E  + +      +           A+ AG G GKT   + +     +   
Sbjct: 25  PRYGQRLMIAEVAKVLGDIACDDEGRRAGEPAVVAVEAGTGTGKTVAYS-LAAIPAAKAA 83

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
           G  ++    +    +  ++ ++   +        F +         +        +  + 
Sbjct: 84  GKRLVIATATVALQEQIVFKDLPDLMRSSGLNFSFALAKGRGR---YLCLSKLDILLQEG 140

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG---------TPDIINKSILGFFTE 217
              + T + + EE     V   +        ++ +G          P+ +        T 
Sbjct: 141 HAQSATAQLFEEEGFHIEVDERSQKLFNSMIEKLAGNRWDGDRDSWPEALEDQDWARLTT 200

Query: 218 LNPN 221
            +  
Sbjct: 201 DHSQ 204


>gi|158345070|ref|YP_001522835.1| putative DNA maturase B [Pseudomonas phage LKD16]
 gi|114796423|emb|CAK25979.1| putative DNA maturase B [Pseudomonas phage LKD16]
          Length = 601

 Score = 38.8 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 31/260 (11%), Positives = 68/260 (26%), Gaps = 28/260 (10%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +      + N       K  ++A RG  K+T+    ++W I   P    + ++ S  + 
Sbjct: 41  DIADFMQDSPN-------KAMVAAQRGEAKSTIACIYVVWCIVRDPRTRAMLVSGSGDKA 93

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLS-LHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
           +             L  +       L+ L P     +    +    +       ++ S  
Sbjct: 94  EEN---------GQLITKLIMHWDLLAYLRPEARMGDRTSATSFDVNWALKGVEKSASIN 144

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT-------SNTRR 232
                          +  D+   T + +  +     T  +     I T          + 
Sbjct: 145 CIGITAALQGYRADILIPDDIETTKNGLTATERAKLTRQSQEFTSICTHGKILYLGTPQS 204

Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292
               +     +P   +       R    +D     G      +   +AR+E  G  P+  
Sbjct: 205 RESIYN---GLPARGFLMRIWPGRF-PTLDEQERYGDWLAPSILERIARLEERGHNPRTG 260

Query: 293 VNNFIPHNYIEEAMSREAID 312
                   +  +       D
Sbjct: 261 KGLDGTRGWAADPQRYNEED 280


>gi|109898646|ref|YP_661901.1| DEAD/DEAH box helicase-like [Pseudoalteromonas atlantica T6c]
 gi|109700927|gb|ABG40847.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica
           T6c]
          Length = 426

 Score = 38.8 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 58/199 (29%), Gaps = 20/199 (10%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGM------SIICIANSETQLKNTLWAEVSKWLS 133
              SA  G GKT   A  +L  +  +P          + +  +          E+++ L+
Sbjct: 41  VLASAQTGTGKTAAFAVPILQQMLNKPKKTTPGTPRALILTPT---------RELAEQLA 91

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
                ++ +   +S+       +L  Q+  + +    +           T       +  
Sbjct: 92  TNIA-NYAKFTDISVTALYGGVKLGGQASKLSAGVDIVISTPGRLLEHMTLKNVELANVE 150

Query: 194 AVFNDEASGTPDIINKS----ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249
            V  DEA    D+   +    +L   T  +    +  T +          + N       
Sbjct: 151 FVVLDEADRMLDMGFIADVRQMLAQITSAHQTLLFSATISPTVNELAHKLLKNHQEIRAT 210

Query: 250 RYQIDTRTVEGIDSGFHEG 268
           +      TV+ +     E 
Sbjct: 211 QLNSAADTVQHVMYPVSEE 229


>gi|317486294|ref|ZP_07945126.1| PhoH-like protein [Bilophila wadsworthia 3_1_6]
 gi|316922464|gb|EFV43718.1| PhoH-like protein [Bilophila wadsworthia 3_1_6]
          Length = 326

 Score = 38.8 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 38/129 (29%), Gaps = 14/129 (10%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKT L   M + +++ R    II    +             +    L        + +
Sbjct: 135 GTGKTYLAVAMAVHMLNARRVRRIILTRPA------------VEAGEKLGFLPGDLAEKV 182

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
           + +    +  L    M    K  ++      E  P  F+     +   +  DEA  T   
Sbjct: 183 NPYLRPLHDAL--LDMLGPQKMASLQETGIIEVAPLAFMRGRTLNDAFIILDEAQNTTRE 240

Query: 207 INKSILGFF 215
             K  L   
Sbjct: 241 QMKMFLTRL 249


>gi|148270656|ref|YP_001245116.1| UvrD/REP helicase [Thermotoga petrophila RKU-1]
 gi|170289362|ref|YP_001739600.1| UvrD/REP helicase [Thermotoga sp. RQ2]
 gi|281412966|ref|YP_003347045.1| UvrD/REP helicase [Thermotoga naphthophila RKU-10]
 gi|147736200|gb|ABQ47540.1| UvrD/REP helicase [Thermotoga petrophila RKU-1]
 gi|170176865|gb|ACB09917.1| UvrD/REP helicase [Thermotoga sp. RQ2]
 gi|281374069|gb|ADA67631.1| UvrD/REP helicase [Thermotoga naphthophila RKU-10]
          Length = 648

 Score = 38.8 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 89/304 (29%), Gaps = 22/304 (7%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
           E+  +P    L F+E +D      V  S     +C + AG G GKT +  + + +L++  
Sbjct: 3   EYRIRPKEANLSFLEDLDEEQRKAVVESEG---RCIVIAGPGSGKTRVITYKIAYLLANG 59

Query: 106 -PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
                I+ +  +    +  +    +     L          +  +    YA  +      
Sbjct: 60  VDPSRILLVTFTRAAAREMVERAKTVTGRELSEMLAGTFHHVCNYFLRKYAPYVGLERNY 119

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
                          R                       P ++          L   R  
Sbjct: 120 SILDREDAESLMRHARSKYLERKSKEERKNF------PQPSVLMAIYSYMKNTLKSLRES 173

Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284
           I+  N +     F D+     E +  Y+ + R+   +D         R   ++   R   
Sbjct: 174 IVVKNPK-----FLDLKEEISEIFDLYEQEKRSQNVVDYEDLLFYAYRLLEENKEIRDRE 228

Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEH 344
             +F    V+ F   NY++  +            ++       G D   +   RG   E+
Sbjct: 229 AERFLWVLVDEFQDTNYVQYRIVEHLSSKHGN--VLAV-----GDDAQSIYSFRGARYEN 281

Query: 345 IFDW 348
           + D+
Sbjct: 282 VEDF 285


>gi|94994795|ref|YP_602893.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750]
 gi|94548303|gb|ABF38349.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750]
          Length = 542

 Score = 38.8 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/195 (12%), Positives = 49/195 (25%), Gaps = 13/195 (6%)

Query: 29  KNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME-AVDVHCHSNVNNSNPTIFKCAISAGRG 87
           ++F+   +   I+ K    F QP+  QL  +   +           +  I++  +    G
Sbjct: 234 RSFLKHSYLAAIEQK-YASFGQPNN-QLNTIRTEIAERVKERGKRDSKGIYRLDL--PTG 289

Query: 88  IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW------- 140
            GKT L+       +          I    + L+    +E+ K    L            
Sbjct: 290 AGKTNLSMRYAFHQLVHHDKSRFFYITPFLSVLEQNA-SEIRKVTGDLGVLEHHSNVVKQ 348

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
              +                   +         +T  + +        +     V  DE 
Sbjct: 349 ANEEDDDKDSLLSAYLSDSWDSQVVLTSMVQFFQTLFKTKSANLRRFSSLINSVVILDEV 408

Query: 201 SGTPDIINKSILGFF 215
              P  +        
Sbjct: 409 QSLPIEVTTLFNLTM 423


>gi|332229232|ref|XP_003263795.1| PREDICTED: Fanconi anemia group M protein isoform 1 [Nomascus
           leucogenys]
          Length = 2050

 Score = 38.8 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/250 (10%), Positives = 67/250 (26%), Gaps = 19/250 (7%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
               +    G+GKT + A +M       P   ++ +A ++  +      ++     ++  
Sbjct: 105 CNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQ----QIEACYQVMGI 160

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
                 +      +    E+      +      +         P             +  
Sbjct: 161 PQSHMAEMTGSTQAFTRKEIWCSKRVLFLTPQVMVNDLSRGACP-------AAEIKCLVI 213

Query: 198 DEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256
           DEA     +     ++    +   +   +  S T   +        I      + ++ + 
Sbjct: 214 DEAHKALGNYAYCQVVRELVKYTNHFRILALSATP-GSDIKAVQQVITNLLIGQIELRSE 272

Query: 257 TVEGI---DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
               I           +     +   A  +   Q  +   ++ I  N +   M R+  + 
Sbjct: 273 DSPDILAYSHERKVEKLIVPLGEELAAIQKTYIQILESFAHSLIQRNVL---MRRDIPNL 329

Query: 314 LYAPLIMGCD 323
               +I+  D
Sbjct: 330 TKYQIILARD 339


>gi|297695020|ref|XP_002824758.1| PREDICTED: Fanconi anemia group M protein-like [Pongo abelii]
          Length = 1967

 Score = 38.8 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/250 (10%), Positives = 67/250 (26%), Gaps = 19/250 (7%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
               +    G+GKT + A +M       P   ++ +A ++  +      ++     ++  
Sbjct: 105 CNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQ----QIEACYQVMGI 160

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
                 +      +    E+      +      +         P             +  
Sbjct: 161 PQSHMAEMTGSTQAFTRKEIWCSKRVLFLTPQVMVNDLSRGACP-------AAEIKCLVI 213

Query: 198 DEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256
           DEA     +     ++    +   +   +  S T   +        I      + ++ + 
Sbjct: 214 DEAHKALGNYAYCQVVRELVKYTNHFRILALSATP-GSDIKAVQQVITNLLIGQIELRSE 272

Query: 257 TVEGI---DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
               I           +     +   A  +   Q  +   ++ I  N +   M R+  + 
Sbjct: 273 DSPDILAYSHERKVEKLIVPLGEELAAIQKTYIQILESFAHSLIQRNVL---MRRDIPNL 329

Query: 314 LYAPLIMGCD 323
               +I+  D
Sbjct: 330 TKYQIILARD 339


>gi|238924846|ref|YP_002938362.1| putative helicase [Eubacterium rectale ATCC 33656]
 gi|238876521|gb|ACR76228.1| predicted helicase [Eubacterium rectale ATCC 33656]
 gi|291526018|emb|CBK91605.1| CRISPR-associated helicase, Cas3 family [Eubacterium rectale DSM
           17629]
 gi|291527248|emb|CBK92834.1| CRISPR-associated helicase, Cas3 family [Eubacterium rectale
           M104/1]
          Length = 704

 Score = 38.8 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 49/165 (29%), Gaps = 8/165 (4%)

Query: 85  GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN--TLWAEVSKWLSMLPHRHWFE 142
             G GKT  +    L          II +    + ++    ++ E+    ++L +    +
Sbjct: 230 PTGGGKTIASLAFALKHAVRHQMEHIIYVIPYTSIIEQNAQVFREILGQDNVLENHCNVD 289

Query: 143 M-QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
              S  L P    +E  ++ + + +          S  R       HN     V  DEA 
Sbjct: 290 YGDSEELKPMQLASENWDKPVIVTTNVQFFESLFAS--RSSKCRKIHNIANSVVIFDEAQ 347

Query: 202 GTPDIINKSILGFFT---ELNPNRFWIMTSNTRRLNGWFYDIFNI 243
             P    K  +       +       + T+    L+  F      
Sbjct: 348 MLPLEYLKPCIAMMENLMDFYRTSIVLCTATQPALDSIFDQHRRY 392


>gi|163748970|ref|ZP_02156221.1| Type I restriction enzyme EcoEI R protein [Shewanella benthica
           KT99]
 gi|161331346|gb|EDQ02234.1| Type I restriction enzyme EcoEI R protein [Shewanella benthica
           KT99]
          Length = 817

 Score = 38.4 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 53/193 (27%), Gaps = 32/193 (16%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST- 104
                P  +Q++ +           N       +  +    G GKT   A+ ++W +   
Sbjct: 162 GSGKAPRYYQIQAINKTIEAISRQQN-------RILLVMATGTGKTY-TAFQIIWRLWKS 213

Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
           R    I+ +A+     +  L  +  K                    +  +A+        
Sbjct: 214 RQKKRILFLAD-----RTALIDQTKK------------NDFQPFGTAMTWAKNRTIDPAF 256

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA---SGTPDIINKSILGFFTELNPN 221
           +         T  EE    +          +  DE    S   D   + IL +FT     
Sbjct: 257 EIHLALYQALTGPEEHQKAYKQVSQDFFDLIIIDECHRGSAADDSAWREILEYFTSATQ- 315

Query: 222 RFWIMTSNTRRLN 234
               +T+  +   
Sbjct: 316 --IGLTATPKETE 326


>gi|167600489|ref|YP_001671988.1| terminase large subunit [Pseudomonas phage LUZ19]
 gi|161168352|emb|CAP45516.1| terminase large subunit [Pseudomonas phage LUZ19]
          Length = 601

 Score = 38.4 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 48/168 (28%), Gaps = 17/168 (10%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +      + N       K  ++A RG  K+T+    ++W I+  P    + ++ S  + 
Sbjct: 41  DIADFMQDSPN-------KAMVAAQRGEAKSTIACIYVVWCITQNPATRAMLVSGSGDKA 93

Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLS-LHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179
           +             L  +       L+ L P     +    +    +       ++ S  
Sbjct: 94  EEN---------GQLITKLIMHWDLLAYLRPEARMGDRTSATSFDVNWALKGVEKSASIN 144

Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
                          +  D+   T + +  +     T  +     I T
Sbjct: 145 CIGITAALQGYRADILIPDDIETTKNGLTATERAKLTRQSQEFTSICT 192


>gi|156934895|ref|YP_001438811.1| hypothetical protein ESA_02743 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533149|gb|ABU77975.1| hypothetical protein ESA_02743 [Cronobacter sakazakii ATCC BAA-894]
          Length = 143

 Score = 38.4 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 31/125 (24%), Gaps = 20/125 (16%)

Query: 84  AGRGIGKTTLNAWMMLWLISTRPGMSI----ICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            GRG  KT   A M           +I    +C       L+ +   EV + +  +P   
Sbjct: 29  GGRGSAKTRTFALMTAVRAYQAAEANISGVILCAREYMNSLEESSMEEVKQAIRSVP--- 85

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
                        W  +  +                +   R +          +  + DE
Sbjct: 86  -------------WLDDYFDIGEKYIRTKNRRVSYVFCGLRHNLDSIKSKARILVAWVDE 132

Query: 200 ASGTP 204
           A    
Sbjct: 133 AESVT 137


>gi|325978229|ref|YP_004287945.1| DNA endonuclease, type III restriction and modification system
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
 gi|325178157|emb|CBZ48201.1| DNA endonuclease, type III restriction and modification system
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
          Length = 928

 Score = 38.4 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 47/158 (29%), Gaps = 10/158 (6%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q + +            N    +F  A     G GKT L A ++L+L       + +
Sbjct: 49  RTYQDKAIRNYHYTQTQIKPNPQHVLFNMA----TGSGKTDLMAGLILYLYQEHGYRNFL 104

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS-----GWYAELLEQSMGIDS 166
              N+ + L  T    V++       ++  E+    +            +     + + S
Sbjct: 105 FTVNTNSVLMKTKDNLVNENSEKYLFQNKIEIDGKHIFIKQVERFPRIQQDNTIYIKLSS 164

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                      +E         N   +AV  DEA    
Sbjct: 165 VQKVSDDLFVLKENTMGLSDYENQ-PVAVLADEAHHYS 201


>gi|315042666|ref|XP_003170709.1| DNA replication ATP-dependent helicase dna2 [Arthroderma gypseum CBS
            118893]
 gi|311344498|gb|EFR03701.1| DNA replication ATP-dependent helicase dna2 [Arthroderma gypseum CBS
            118893]
          Length = 1595

 Score = 38.4 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 32/120 (26%), Gaps = 7/120 (5%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS--MLPHRHWFEMQ 144
            G GKTT  A ++        G S++  + + T + N L            L        +
Sbjct: 1094 GTGKTTTIAQII--RALVSQGKSVLLTSYTHTAVDNILLKIRDDKFRILRLGTPSKVHPE 1151

Query: 145  SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                       +   + +    ++  I   T            +         DEAS   
Sbjct: 1152 VQQFAEMATTPKNTIEELEDSYENSKIVATTCLGVNH---RIFNTRTFDYCIVDEASQIT 1208


>gi|312076550|ref|XP_003140911.1| U5 small nuclear ribonucleoprotein helicase [Loa loa]
 gi|307763923|gb|EFO23157.1| U5 small nuclear ribonucleoprotein helicase [Loa loa]
          Length = 1646

 Score = 38.4 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/160 (11%), Positives = 37/160 (23%), Gaps = 21/160 (13%)

Query: 53   RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
              Q +    V     S             I A  G GKT    + +L     RP    + 
Sbjct: 1329 PIQTQVFRTVYEGNDS-----------VFIGAPHGSGKTVCAEFAILRHFDNRPDAKAVY 1377

Query: 113  IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            +      +++    +   W   +       +  L+  PS     L    + I +      
Sbjct: 1378 VTP----MEDLAEKKFGDWQERIGTALEKTVVMLTGEPSTDLKLLQRGQLIIATPEKWDN 1433

Query: 173  CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212
                  ++                 D+           + 
Sbjct: 1434 VSR-RWKQRKNVQAVR-----LFIVDDLHMIGGNNGPVLE 1467


>gi|310765239|gb|ADP10189.1| Non-specific serine/threonine protein kinase [Erwinia sp. Ejp617]
          Length = 1081

 Score = 38.4 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 57/226 (25%), Gaps = 22/226 (9%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMS-IICIANSETQLKNTLWAEVSKWL--SMLPHRHWFEM 143
           G+GKT      ++W I   P     + +A     L +    E+  +   + +P    +  
Sbjct: 612 GLGKTLQILAFLVWNIEQNPDGEPGLIVAPV--SLLDNWQRELDNFFCTAGIPVLKLYGE 669

Query: 144 QSLSLHPSGWYAEL------LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
              ++               ++  +    +       T  E   D            +  
Sbjct: 670 TIGAVKYRQQDIPAHLKAQGIKNLLQPGWRGEAKIVLTTYETLRDQEFSLARQPWSIMVC 729

Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN--------GWFYDIFNIPLEDWK 249
           DEA    +     I      +        T                +        L ++ 
Sbjct: 730 DEAQKIKNPA-ALITQAANAVQARFKVACTGTPVENTLVDLWSLFDFVQPGLLGALNEFG 788

Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI--EILGQFPQQEV 293
           +  + T   E          + +      + R   E+ G  PQ+  
Sbjct: 789 KRYVRTIENEDGRHHRALEQLRQLIKPQTLRRTKEEVAGDLPQKIE 834


>gi|315446103|ref|YP_004078982.1| nuclease-like protein [Mycobacterium sp. Spyr1]
 gi|315264406|gb|ADU01148.1| nuclease-like protein [Mycobacterium sp. Spyr1]
          Length = 551

 Score = 38.4 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 37/139 (26%), Gaps = 5/139 (3%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  I  G G GKT L       L      ++++C ++    L + L    + W       
Sbjct: 221 RVEIRGGAGSGKTFLAMEQARRLARAGRRVALVCYSH---GLASYLERITATWNRRHRPA 277

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
           +  E   L                    + +     +            H     A+  D
Sbjct: 278 YVGEFHDLGKQWGAPAGPDESVRNDETVRFWEHDLPSQMTRLATQLDPGHR--FDAIVVD 335

Query: 199 EASGTPDIINKSILGFFTE 217
           EA    D     +L    +
Sbjct: 336 EAQDFADAWWDPLLAALKD 354


>gi|221197472|ref|ZP_03570519.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2M]
 gi|221204145|ref|ZP_03577163.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2]
 gi|221176311|gb|EEE08740.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2]
 gi|221184026|gb|EEE16426.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2M]
          Length = 464

 Score = 38.4 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/182 (9%), Positives = 39/182 (21%), Gaps = 10/182 (5%)

Query: 87  GIGKTTLNAWMMLWLI-STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
           G GKT   +  +L  + + R  +  + +  +                +    +       
Sbjct: 54  GSGKTAAFSLALLSRLDARRFDVQAMILCPTRELADQVAQEVRRLARAEENVKVLTLCGG 113

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
             + P     E            + +                       +  DEA    D
Sbjct: 114 TPMRPQAQSLEH---------GAHIVVGTPGRIMDHLDRGNLQLDALNTLVLDEADRMLD 164

Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265
           +     +       P     +  +    +G             +    +      I   F
Sbjct: 165 MGFFDDIAKVARQCPPTRQTLLFSATYPDGIAKLSQQFLRNPKEVKLEERHDDSKIRQRF 224

Query: 266 HE 267
           +E
Sbjct: 225 YE 226


>gi|114048358|ref|YP_738908.1| EcoEI R domain-containing protein [Shewanella sp. MR-7]
 gi|113889800|gb|ABI43851.1| EcoEI R, C-terminal domain protein [Shewanella sp. MR-7]
          Length = 821

 Score = 38.4 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 49/192 (25%), Gaps = 26/192 (13%)

Query: 44  PLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS 103
           P  +   P  +QL+ +        +  +       +  +    G GKT   A+ ++W + 
Sbjct: 166 PDSNGKAPRYYQLQAINKTVEAVAAGQD-------RVLLVMATGTGKTY-TAFQIIWRLW 217

Query: 104 T-RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
             R    I+ +A+     +N L  +                       S           
Sbjct: 218 KSRAKKRILFLAD-----RNILVDQTK------------TNDFQPFGTSMTKVTGRTVDP 260

Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222
             +         T  EE    +          +  DE        + +        +   
Sbjct: 261 AYEIHLALYQALTGPEESQKAYKQVAPDFFDLIVVDECHRGSAAEDSAWREILEYFSAAT 320

Query: 223 FWIMTSNTRRLN 234
              +T+  +  +
Sbjct: 321 QIGLTATPKETD 332


>gi|317026211|ref|XP_001389173.2| DNA replication helicase Dna2 [Aspergillus niger CBS 513.88]
          Length = 1660

 Score = 38.4 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 31/120 (25%), Gaps = 7/120 (5%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR--HWFEMQ 144
            G GKTT  A ++        G S++  + + T + N L         +L           
Sbjct: 1167 GTGKTTTIAHII--RALVAQGKSVLLTSYTHTAVDNILLKIKDDNFRILRIGAPAKVHPD 1224

Query: 145  SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                       +   + +    +   +   T        F             DEAS   
Sbjct: 1225 VQQFAELAAVPKSTMEELKASYEDSQVVATTCLGVSHGIFTQ---RMFDYCIVDEASQIT 1281


>gi|134055283|emb|CAK96173.1| unnamed protein product [Aspergillus niger]
          Length = 1085

 Score = 38.4 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 31/120 (25%), Gaps = 7/120 (5%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR--HWFEMQ 144
           G GKTT  A ++        G S++  + + T + N L         +L           
Sbjct: 592 GTGKTTTIAHII--RALVAQGKSVLLTSYTHTAVDNILLKIKDDNFRILRIGAPAKVHPD 649

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                      +   + +    +   +   T        F             DEAS   
Sbjct: 650 VQQFAELAAVPKSTMEELKASYEDSQVVATTCLGVSHGIFTQ---RMFDYCIVDEASQIT 706


>gi|116195494|ref|XP_001223559.1| hypothetical protein CHGG_04345 [Chaetomium globosum CBS 148.51]
 gi|88180258|gb|EAQ87726.1| hypothetical protein CHGG_04345 [Chaetomium globosum CBS 148.51]
          Length = 1610

 Score = 38.4 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 48/185 (25%), Gaps = 14/185 (7%)

Query: 15   LHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSN 74
            L   L     +     F +  FP G +     H       Q    + V  H    V+  +
Sbjct: 1130 LSNQLWKETKLAHPLGFDVGDFPDGAEDTLSPH-------QRLIYDMVMTHDQQTVDGLH 1182

Query: 75   PTIFKCAISAGRGIGKTTLNAWMMLWLI-----STRPGMS--IICIANSETQLKNTLWAE 127
            P   +  I    G GK+     +   L        RP     +I  A +           
Sbjct: 1183 PPPLRLNIDGRGGSGKSYAIKLISAHLYKRAVQQARPDAENIVIRSAPTGVAANGIQGTT 1242

Query: 128  VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187
            +   L +      FE  S     +        + + ID K           +     + P
Sbjct: 1243 LHSLLRLPVGIVAFEPLSPPDVAAAQARLQSLKYLVIDEKSMISLKTMGFIDNRLRQIFP 1302

Query: 188  HNTHG 192
             +   
Sbjct: 1303 RSNEP 1307


>gi|331702004|ref|YP_004398963.1| DEAD/DEAH box helicase domain-containing protein [Lactobacillus
           buchneri NRRL B-30929]
 gi|329129347|gb|AEB73900.1| DEAD/DEAH box helicase domain protein [Lactobacillus buchneri NRRL
           B-30929]
          Length = 429

 Score = 38.4 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 60/224 (26%), Gaps = 19/224 (8%)

Query: 66  CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW 125
               V             A  G GKT   A  +L  I    G+S++ I  S      T  
Sbjct: 20  IQQAVYQPLKDGQSVLGLAPTGSGKTVAFALPLLENIQPEDGLSLLVIEPSAELAMQT-- 77

Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185
                         W ++  LS+      A +  Q   +      I   T          
Sbjct: 78  --------QKVLLEWGKLIGLSVQGIIGGANINRQVDKLKQHPNVIVGTTGRIVNLIDLG 129

Query: 186 GPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244
                   A+  DEA +   +    SI       + +      S T+             
Sbjct: 130 KLKLDSLKAIVIDEADNLLSEDTLASIRSLVDLADDSVTLGFFSATQND-------LLAH 182

Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
           +  W    I T  V  ID      +       S+  + ++L +F
Sbjct: 183 VNRWFVQDIQTFDVSDIDDTRG-EVKHTLLEVSNRKKAQMLLRF 225


>gi|325124331|gb|ADY83854.1| exonuclease V, alpha subunit [Acinetobacter calcoaceticus PHEA-2]
          Length = 583

 Score = 38.4 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 38/148 (25%), Gaps = 16/148 (10%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
           ++++ +                   I+ G G GKT   A ++  L    P + +   A +
Sbjct: 119 DYLDLLTDAHQQAALQMVARQSLSIITGGPGTGKTYTLARIIAVLSQAIPHIRVAMAAPT 178

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
               +                     +Q+    P    + L+ + +              
Sbjct: 179 GKAAQRM----------------QEALQNSFNDPKLLESGLVSEELRNQGTQTIHRLLGM 222

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTP 204
              +   F          +  DEAS   
Sbjct: 223 GHSQTPRFNQKQPLPYDVIVVDEASMLD 250


>gi|311278820|ref|YP_003941051.1| cyclic peptide transporter [Enterobacter cloacae SCF1]
 gi|308748015|gb|ADO47767.1| cyclic peptide transporter [Enterobacter cloacae SCF1]
          Length = 547

 Score = 38.4 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 57/195 (29%), Gaps = 20/195 (10%)

Query: 49  SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA------ISAGRGIGKTTLNAWMMLWLI 102
            +P  WQ   +  V  H   N     P     A      +  G G GK+TL   M+L  +
Sbjct: 316 DRPD-WQTLELRDVTFHYQDNTFGIGPINLTLARGELVFLIGGNGSGKSTLA--MLLTGL 372

Query: 103 STRPGMSIIC----IANSETQLKNTLWAEV--SKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
                  I+     +A    +    L++ V    WL         +     L        
Sbjct: 373 YQPVSGQILVDGKPLAAERPEDYRRLFSAVFTDVWLFDKLLGPAGQEADPRLTDKWLSLL 432

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-----KSI 211
            +   + +++        +  +++    +         +  DE +   D        + +
Sbjct: 433 KMTGKVTLENGTILDLRLSKGQKKRVALLLALAEARDIILLDEWAADQDPHFRREFYQVL 492

Query: 212 LGFFTELNPNRFWIM 226
           L    ++    F I 
Sbjct: 493 LPLMQQMGKTVFAIS 507


>gi|307104210|gb|EFN52465.1| hypothetical protein CHLNCDRAFT_138793 [Chlorella variabilis]
          Length = 2323

 Score = 38.4 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 42/157 (26%), Gaps = 21/157 (13%)

Query: 45   LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104
            L  FS  +  Q +    +        +  +P      + A  G GKT      ML L S 
Sbjct: 1374 LYKFSHFNPIQTQAFHTLY-------HTDHP----VLLGAPTGSGKTISAELAMLRLFSQ 1422

Query: 105  RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
             PG  +I +A  +  ++      +  W         F                 +    +
Sbjct: 1423 HPGQKVIYVAPLKALVRER----IKDW------GAGFCRALGKRLVELTGDYTPDMHALL 1472

Query: 165  DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
             +     T   +     +     +      +  DE  
Sbjct: 1473 AADVIICTPEKWDGISRNWRSRSYVRKVGLLVIDEIH 1509


>gi|254507584|ref|ZP_05119717.1| EcoEI R C-terminal domain protein [Vibrio parahaemolyticus 16]
 gi|219549471|gb|EED26463.1| EcoEI R C-terminal domain protein [Vibrio parahaemolyticus 16]
          Length = 814

 Score = 38.4 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/190 (11%), Positives = 47/190 (24%), Gaps = 26/190 (13%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST- 104
                P  +QL+ +        +  N       +  +    G GKT   A+ ++W +   
Sbjct: 164 GSGKSPRYYQLQAINKTVEAVAAGQN-------RVLLVMATGTGKTY-TAFQIIWRLWKS 215

Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
           R    I+ +A+     +N L  +                      P+             
Sbjct: 216 RAKKRILFLAD-----RNILVDQTK------------TNDFQPFGPAMTKVTGRTVDPAY 258

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
           +         T  EE    +          +  DE        + +              
Sbjct: 259 EIHLALYQALTGPEEHQKAYKQVDPDFFDLIVVDECHRGSAAEDSAWREILEYFGSATQI 318

Query: 225 IMTSNTRRLN 234
            +T+  +  +
Sbjct: 319 GLTATPKETD 328


>gi|310657378|ref|YP_003935099.1| putative helicase [Clostridium sticklandii DSM 519]
 gi|308824156|emb|CBH20194.1| putative Similarities with helicase [Clostridium sticklandii]
          Length = 636

 Score = 38.4 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/208 (10%), Positives = 56/208 (26%), Gaps = 20/208 (9%)

Query: 29  KNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGI 88
           +N+     P  +  + L +       Q+E    +  + +S  +N         +    G+
Sbjct: 7   ENYFKYSKPNILGNEELRYP------QVEAYIEIKEYFNSEYDN-----RNALVVLPTGV 55

Query: 89  GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH--WFEMQSL 146
           GKT   A           G  ++ +          + A      +    +   +   + L
Sbjct: 56  GKTGFMAIA----PFGVSGGRVLIVTPYAAIKNTVIDALNPDIYNNFWLKRNVFSSRKFL 111

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                    +   + +   +       +  S                 +  DEA  +   
Sbjct: 112 PTIIEYNGQDTPMEVLNKANIVILNIHKLQSRLDSSLINRVSKDFFDMIIIDEAHHSTAD 171

Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLN 234
                + +F   + ++   +T    R +
Sbjct: 172 TWVECVNYF---DKSKVLKLTGTPFRTD 196


>gi|46255203|ref|YP_006115.1| hypothetical protein TT_P0132 [Thermus thermophilus HB27]
 gi|46198052|gb|AAS82462.1| hypothetical conserved protein [Thermus thermophilus HB27]
          Length = 786

 Score = 38.4 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 33/260 (12%), Positives = 61/260 (23%), Gaps = 33/260 (12%)

Query: 60  EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119
             V   C      S P +F+  +    G GKT       L          ++      + 
Sbjct: 290 REVYEACLQAAELS-PGLFRLTV--PTGGGKTRSGLAFALRHALKHGLRRVVVAIPYTSI 346

Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE- 178
           +  T               H    +            +L Q +  ++    +   T  + 
Sbjct: 347 IDQTAQVYREILGEEAVLEHHSAYE--PPLGEEQEENVLRQRLATENWDAPLVVTTTVQL 404

Query: 179 ------ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232
                  RP      H      +  DE    P  + K  L             + +    
Sbjct: 405 FESLFSNRPSKMRKVHRLARSVILLDEVQTLPPELLKPTLEALR---------LLATPVE 455

Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292
             G+   +           Q     V          I+  Y       +  +  + P+  
Sbjct: 456 EGGYGATVV-----LSTATQPTFEVVPTFQGLPVREIVPDYPRHFARLQRVVYERRPK-- 508

Query: 293 VNNFIPHNYIEEAMSREAID 312
                P ++ E A   +A  
Sbjct: 509 -----PLSWEELARELQARP 523


>gi|317124599|ref|YP_004098711.1| NERD domain protein [Intrasporangium calvum DSM 43043]
 gi|315588687|gb|ADU47984.1| NERD domain protein [Intrasporangium calvum DSM 43043]
          Length = 560

 Score = 38.4 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 38/143 (26%), Gaps = 11/143 (7%)

Query: 79  KCAISAGRGIGKTTLN---AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
           +  +  G G GKT L    A  +      R    +  +  S       L     + L   
Sbjct: 232 RMEVRGGAGSGKTILALTQAKDLTRGQGERRPQRVALLCYSIG-----LSQYFKRQLQAA 286

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
           PHRH     + S         +       D   +            +    P +    A+
Sbjct: 287 PHRHRPAF-AGSFEDLANEWGIATAHDRNDRDFWERDLAAQMAAVAERL--PESRRFDAI 343

Query: 196 FNDEASGTPDIINKSILGFFTEL 218
             DEA    D     ++    + 
Sbjct: 344 IVDEAQDFADHWWNPLMKSLKDE 366


>gi|238021357|ref|ZP_04601783.1| hypothetical protein GCWU000324_01256 [Kingella oralis ATCC 51147]
 gi|237868337|gb|EEP69343.1| hypothetical protein GCWU000324_01256 [Kingella oralis ATCC 51147]
          Length = 619

 Score = 38.4 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/269 (10%), Positives = 65/269 (24%), Gaps = 63/269 (23%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
           F+E +  +    V       F+  + + R IG T   A   L          +   A   
Sbjct: 175 FLEQLFDYQR--VWLKQQVRFRHLLKS-RQIGATFFFAREALVDAVKTGKNKVFLSA--- 228

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
           +Q +  ++            +++    +  +      ++++    G +        RT  
Sbjct: 229 SQAQAFIF------------KNYMRKLAGMVDVELKGSDVITLGNGAELHFLGTNSRTAQ 276

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNG 235
               D            ++ DE    PD   +        ++          S     + 
Sbjct: 277 GRNGD------------LYVDEYFWIPDFKRLRDLANPMASQ--KRYRITYFSTPSTTSH 322

Query: 236 WFYDIF----------------------------NIPLEDWKRYQIDTRTVEGIDSGFHE 267
             YD +                            + P   W++  +     E       +
Sbjct: 323 PAYDFWTGAEFNVGRAESERIKLDVSPAALAAGRHDPDGKWRQV-VTLDDAERGGCNLFD 381

Query: 268 GIISRYGLDSDVARIEILGQFPQQEVNNF 296
                        R   + +F +     F
Sbjct: 382 REQLMLENAPAQFRQLFMCEFVEDGDGVF 410


>gi|224503353|ref|ZP_03671660.1| hypothetical protein LmonFR_12705 [Listeria monocytogenes FSL
           R2-561]
          Length = 441

 Score = 38.4 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 34/152 (22%), Gaps = 11/152 (7%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +WQ    E       S +             +  G GKT   A   L  I   P    +
Sbjct: 12  EKWQEHGYETPTE-IQSAMYQPIKDGADVLAVSPTGTGKTVAYALPTLEKIEAIPKTQWL 70

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +A S   +                 R W     L++      A +  Q   +  K   I
Sbjct: 71  VLAPSHELVMQITE----------VIRSWLPSDDLTVISLIGGANVKRQIEKLKKKPQII 120

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
                                  +  DE    
Sbjct: 121 VASPGRALELIKQKKIKMHEIKTITLDECDQL 152


>gi|254832425|ref|ZP_05237080.1| hypothetical protein Lmon1_13804 [Listeria monocytogenes 10403S]
          Length = 441

 Score = 38.4 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 34/152 (22%), Gaps = 11/152 (7%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +WQ    E       S +             +  G GKT   A   L  I   P    +
Sbjct: 12  EKWQEHGYETPTE-IQSAMYQPIKDGADVLAVSPTGTGKTVAYALPTLEKIEAIPKTQWL 70

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +A S   +                 R W     L++      A +  Q   +  K   I
Sbjct: 71  VLAPSHELVMQITE----------VIRSWLPSDDLTVISLIGGANVKRQIEKLKKKPQII 120

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
                                  +  DE    
Sbjct: 121 VASPGRALELIKQKKIKMHEIKTITLDECDQL 152


>gi|145225752|ref|YP_001136430.1| hypothetical protein Mflv_5176 [Mycobacterium gilvum PYR-GCK]
 gi|145218238|gb|ABP47642.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
          Length = 551

 Score = 38.4 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 37/139 (26%), Gaps = 5/139 (3%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  I  G G GKT L       L      ++++C ++    L + L    + W       
Sbjct: 221 RVEIRGGAGSGKTFLAMEQARRLARAGRRVALVCYSH---GLASYLERITATWNRRHRPA 277

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
           +  E   L                    K +     +            H     A+  D
Sbjct: 278 YVGEFHDLGKQWGAPAGPDESVRNDETVKFWEHDLPSQMTRLATQLDPGHR--FDAIVVD 335

Query: 199 EASGTPDIINKSILGFFTE 217
           EA    D     +L    +
Sbjct: 336 EAQDFADAWWDPLLAALKD 354


>gi|16803762|ref|NP_465247.1| hypothetical protein lmo1722 [Listeria monocytogenes EGD-e]
 gi|47095648|ref|ZP_00233255.1| helicase domain protein [Listeria monocytogenes str. 1/2a F6854]
 gi|224499557|ref|ZP_03667906.1| hypothetical protein LmonF1_07612 [Listeria monocytogenes Finland
           1988]
 gi|254829244|ref|ZP_05233931.1| helicase domain-containing protein [Listeria monocytogenes FSL
           N3-165]
 gi|254900773|ref|ZP_05260697.1| hypothetical protein LmonJ_13194 [Listeria monocytogenes J0161]
 gi|254913741|ref|ZP_05263753.1| helicase domain-containing protein [Listeria monocytogenes J2818]
 gi|254938128|ref|ZP_05269825.1| helicase domain-containing protein [Listeria monocytogenes F6900]
 gi|284802166|ref|YP_003414031.1| hypothetical protein LM5578_1922 [Listeria monocytogenes 08-5578]
 gi|284995308|ref|YP_003417076.1| hypothetical protein LM5923_1873 [Listeria monocytogenes 08-5923]
 gi|16411176|emb|CAC99800.1| lmo1722 [Listeria monocytogenes EGD-e]
 gi|47015933|gb|EAL06859.1| helicase domain  protein [Listeria monocytogenes str. 1/2a F6854]
 gi|258601656|gb|EEW14981.1| helicase domain-containing protein [Listeria monocytogenes FSL
           N3-165]
 gi|258610742|gb|EEW23350.1| helicase domain-containing protein [Listeria monocytogenes F6900]
 gi|284057728|gb|ADB68669.1| hypothetical protein LM5578_1922 [Listeria monocytogenes 08-5578]
 gi|284060775|gb|ADB71714.1| hypothetical protein LM5923_1873 [Listeria monocytogenes 08-5923]
 gi|293591758|gb|EFG00093.1| helicase domain-containing protein [Listeria monocytogenes J2818]
          Length = 441

 Score = 38.4 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 34/152 (22%), Gaps = 11/152 (7%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +WQ    E       S +             +  G GKT   A   L  I   P    +
Sbjct: 12  EKWQEHGYETPTE-IQSAMYQPIKDGADVLAVSPTGTGKTVAYALPTLEKIEAIPKTQWL 70

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +A S   +                 R W     L++      A +  Q   +  K   I
Sbjct: 71  VLAPSHELVMQITE----------VIRSWLPSDDLTVISLIGGANVKRQIEKLKKKPQII 120

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
                                  +  DE    
Sbjct: 121 VASPGRALELIKQKKIKMHEIKTITLDECDQL 152


>gi|229844857|ref|ZP_04464995.1| DNA-dependent helicase II [Haemophilus influenzae 6P18H1]
 gi|229812238|gb|EEP47929.1| DNA-dependent helicase II [Haemophilus influenzae 6P18H1]
          Length = 726

 Score = 38.4 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 81/302 (26%), Gaps = 29/302 (9%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIA 114
           E ++ ++      V           + AG G GKT +    + WLI+       SI+ + 
Sbjct: 5   ELLDGLNDKQREAVAAPIGNH---LVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            +            S       H+ +          +          +G+      +   
Sbjct: 62  FTNKAAAEMRHRIQSTLAKHAQHQLFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSE 121

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
                     +  HN        DE +  P       +    +               + 
Sbjct: 122 -DQLRLIKRLLKLHN-------FDEKAF-PPKQACWYINNKKDEGLR--------PNDIE 164

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294
            +        ++ ++ YQ        +D       +        +       +F    V+
Sbjct: 165 DFNDRQEREWIKIYQIYQDTCDRAGLVDFAELLIRVYELFEKKPLILQRYQQRFQHILVD 224

Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354
            F   N I+     + +      +++  D      D++ +   RG  IE+I  +      
Sbjct: 225 EFQDTNKIQYK-WIKILAGKTGKVMIVGD-----DDQS-IYGWRGAQIENIQKFLKDFKA 277

Query: 355 ET 356
           ET
Sbjct: 278 ET 279


>gi|68249734|ref|YP_248846.1| DNA-dependent helicase II [Haemophilus influenzae 86-028NP]
 gi|68057933|gb|AAX88186.1| DNA helicase II [Haemophilus influenzae 86-028NP]
          Length = 727

 Score = 38.4 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 80/302 (26%), Gaps = 29/302 (9%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIA 114
           E ++ ++      V           + AG G GKT +    + WLI+       SI+ + 
Sbjct: 6   ELLDGLNDKQRKAVAAPLGNH---LVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 62

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            +            S       H+            +          +G+      +   
Sbjct: 63  FTNKAAAEMRHRIQSTLAKHAQHQLVGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSE 122

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
                     +  HN        DE +  P       +    +               + 
Sbjct: 123 -DQLRLIKRLLKLHN-------FDEKAF-PPKQACWYINNKKDEGLR--------PNDIE 165

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294
            +        ++ ++ YQ        +D       +        +       +F    V+
Sbjct: 166 DFNDRQEREWIKIYQIYQDTCDRAGLVDFAELLIRVYELFEKKPLILQRYQQRFQHILVD 225

Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354
            F   N I+     + +      +++  D      D++ +   RG  IE+I  +      
Sbjct: 226 EFQDTNKIQYK-WIKILSGKTGKVMIVGD-----DDQS-IYGWRGAQIENIQKFLKDFKA 278

Query: 355 ET 356
           ET
Sbjct: 279 ET 280


>gi|328354481|emb|CCA40878.1| DNA replication ATP-dependent helicase Dna2 [Pichia pastoris CBS
            7435]
          Length = 1413

 Score = 38.4 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/119 (12%), Positives = 38/119 (31%), Gaps = 3/119 (2%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKTT+ A ++  +++   G S++  +++ + + + L   +   +         ++  L
Sbjct: 974  GTGKTTVIAQIIRIMVAN--GKSVLLTSHTHSAVDSILLKLLDDGIDFYRVGSEAKIHPL 1031

Query: 147  -SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                           S+    +         +       +  +         DEAS   
Sbjct: 1032 VRKFMPQKRGSADMNSIEDFQRMIHQAPVVAATCMGVGDLVFNYRTFDYCIVDEASQVS 1090


>gi|260940775|ref|XP_002615227.1| hypothetical protein CLUG_04109 [Clavispora lusitaniae ATCC 42720]
 gi|238850517|gb|EEQ39981.1| hypothetical protein CLUG_04109 [Clavispora lusitaniae ATCC 42720]
          Length = 477

 Score = 38.4 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 47/157 (29%), Gaps = 12/157 (7%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIIC 112
           Q+  +  +      N    +       ++A  G GKT   +  ++  +  R  P +  I 
Sbjct: 133 QVGTLRLIMEDIRRNRLAPD-FRGDLLVNASTGSGKTLAYSIPVIEALYDRVVPRVRAII 191

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           +  ++      L  +VS+ L  L +     + SL+   S     +   +   D     I 
Sbjct: 192 LVPTKP-----LITQVSQTLRDLSNGTTLSIVSLTSDLSIREEGIKITTNIPD----VIV 242

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209
                                 +  DEA    +   +
Sbjct: 243 STPGRLVDHLLNGSISLEALRFLIIDEADRLLNQSFQ 279


>gi|254573166|ref|XP_002493692.1| Essential tripartite DNA replication factor with single-stranded
            DNA-dependent ATPase [Pichia pastoris GS115]
 gi|238033491|emb|CAY71513.1| Essential tripartite DNA replication factor with single-stranded
            DNA-dependent ATPase [Pichia pastoris GS115]
          Length = 1397

 Score = 38.4 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/119 (12%), Positives = 38/119 (31%), Gaps = 3/119 (2%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKTT+ A ++  +++   G S++  +++ + + + L   +   +         ++  L
Sbjct: 958  GTGKTTVIAQIIRIMVAN--GKSVLLTSHTHSAVDSILLKLLDDGIDFYRVGSEAKIHPL 1015

Query: 147  -SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                           S+    +         +       +  +         DEAS   
Sbjct: 1016 VRKFMPQKRGSADMNSIEDFQRMIHQAPVVAATCMGVGDLVFNYRTFDYCIVDEASQVS 1074


>gi|84497795|ref|ZP_00996592.1| hypothetical protein JNB_16948 [Janibacter sp. HTCC2649]
 gi|84381295|gb|EAP97178.1| hypothetical protein JNB_16948 [Janibacter sp. HTCC2649]
          Length = 1203

 Score = 38.4 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 62/219 (28%), Gaps = 17/219 (7%)

Query: 76   TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135
                 ++    G GKT + + ++  L+    G  +   A S   ++N L A V+  +   
Sbjct: 803  DRSALSVQGPPGTGKTYVASQVIADLVRDH-GWRVGVCAQSHASIENVLAAVVAAGVDPE 861

Query: 136  PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
                  +  +         A+ L          Y I    +    P             +
Sbjct: 862  QVAKMTKEATEPTWTDLASADDLAGFAAEQQGGYVIGGTAWDLTNPKRVQPG---QLDLL 918

Query: 196  FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED------WK 249
              DEA         S+             ++  + ++L          P++        +
Sbjct: 919  VIDEAGQ------YSLAKTLAVAESADRLLLLGDPQQLPQVSQGTHPEPVDASALGWVIR 972

Query: 250  RYQIDTRTVEGIDSGFHE-GIISRYGLDSDVARIEILGQ 287
              + D R +      F E        L   V+R+   G+
Sbjct: 973  AERDDERVLPASHGYFLETTWRMHPALTEPVSRLAYEGR 1011


>gi|326444878|ref|ZP_08219612.1| hypothetical protein SclaA2_27605 [Streptomyces clavuligerus ATCC
           27064]
          Length = 870

 Score = 38.4 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 36/153 (23%), Gaps = 28/153 (18%)

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT--LWAEVSK-- 130
           P   +  I +  G GKT   A   L    +     ++    +   L  T   W  V    
Sbjct: 3   PQGARGTIVSATGSGKTITAAACAL---ESFADGRVLVTVPTLDLLAQTAQAWRLVGHRA 59

Query: 131 ------------WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
                        L+ L  R       L+L        +      +  +          +
Sbjct: 60  PMVAVCSLENDPVLNSLGVRTTTNPIQLALWAGSGPVVVFATYASLVDREEIGAPVGQRK 119

Query: 179 ER---------PDTFVGPHNTHGMAVFNDEASG 202
            R          +   G           DEA G
Sbjct: 120 VRGPLEAALAGGERLYGQRMASFDLAIVDEAHG 152


>gi|319652392|ref|ZP_08006508.1| helicase [Bacillus sp. 2_A_57_CT2]
 gi|317395854|gb|EFV76576.1| helicase [Bacillus sp. 2_A_57_CT2]
          Length = 1050

 Score = 38.4 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 54/188 (28%), Gaps = 31/188 (16%)

Query: 50  QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW-MMLWLISTRPGM 108
           QP+ +Q E +E +       V        K  I A  G+GKT ++A+    +    R   
Sbjct: 324 QPYYYQKEILEKLQ------VERKVFGRRKNLIVAATGVGKTVISAFDYKNYYKQNRHAA 377

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
            ++ +A+ E  LK +L       L                     +  +   +     ++
Sbjct: 378 KLLFVAHREEILKQSL-DTFRAILKDANFGDLLVGNHQPSSLDHLFVSIQSFNSKKLYEN 436

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI-MT 227
            T                        +  DE         +       +       + +T
Sbjct: 437 TTADF------------------YDFIIVDEFHHAAANSYQ----TLLDYYKPNILVGLT 474

Query: 228 SNTRRLNG 235
           +   R++G
Sbjct: 475 ATPERMDG 482


>gi|302756859|ref|XP_002961853.1| hypothetical protein SELMODRAFT_140315 [Selaginella moellendorffii]
 gi|300170512|gb|EFJ37113.1| hypothetical protein SELMODRAFT_140315 [Selaginella moellendorffii]
          Length = 1015

 Score = 38.4 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 65/207 (31%), Gaps = 16/207 (7%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            A++A RG GK+      +   ++     +I   A S   LK  L+  V K    L ++ 
Sbjct: 279 VALTASRGRGKSAALGLAIAGAVAFGY-SNIFVTAPSPENLKT-LFEFVCKGFDALEYKE 336

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +   +      +   ++  ++    +      +     +              +  DE
Sbjct: 337 HIDYDLVQSTNPAFNKAVVRVNIFRQHRQTIQYIQPQDHAK--------LAQAELLIIDE 388

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
           A+  P  + K++LG +       F   T N     G    +  I     +       +V 
Sbjct: 389 AAAIPLPMVKALLGPYL-----VFMCSTVNGYEGTGRSLSLKLIQQLRSQGKSESAPSV- 442

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILG 286
             +    E I    G   +    E+L 
Sbjct: 443 FREVELAEPIRYGAGDPIEGWLHELLC 469


>gi|227496838|ref|ZP_03927104.1| type I restriction-modification system restriction subunit
           [Actinomyces urogenitalis DSM 15434]
 gi|315656944|ref|ZP_07909831.1| type I site-specific deoxyribonuclease [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|226833659|gb|EEH66042.1| type I restriction-modification system restriction subunit
           [Actinomyces urogenitalis DSM 15434]
 gi|315492899|gb|EFU82503.1| type I site-specific deoxyribonuclease [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 1009

 Score = 38.4 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 47/179 (26%), Gaps = 12/179 (6%)

Query: 23  ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82
           + +  F  FV    P G   K  +    P   QL+ +  +     +N    N  +   A 
Sbjct: 251 DILHRFVQFVPGKTPEGRPAKSKDKVIFPRFHQLDAVRKLIADAKANGAGHNYLVQHSA- 309

Query: 83  SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142
               G GK+   AW+   L +       +          + +     + L        F 
Sbjct: 310 ----GSGKSNTIAWLAHHLSNLHDDQQRVVF-------DSIIVITDRRVLDKQLQDTVFS 358

Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201
           M   +           + +  +      I          D           AV  DEA 
Sbjct: 359 MDHTAGVVVKVDKNARQLTDALGRGARIIISTLQKFPFVDVSNIATAGKRFAVIVDEAH 417


>gi|225870101|ref|YP_002746048.1| RNA helicase [Streptococcus equi subsp. equi 4047]
 gi|225699505|emb|CAW93057.1| putative RNA helicase [Streptococcus equi subsp. equi 4047]
          Length = 364

 Score = 38.4 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/186 (10%), Positives = 41/186 (22%), Gaps = 13/186 (6%)

Query: 51  PHRWQLEFMEAVDVHC---HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107
           P +WQ +  +    +       V             +  G GKT    W  L  +S +  
Sbjct: 6   PTQWQEKLAKLGFTNLTPIQEQVFQPIVDGKSLLGISPTGTGKTLAYLWPSLLRLSPKKA 65

Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
             ++ +A +       L+    +W   L       +   S                +   
Sbjct: 66  QQLLILAPNTELAGQ-LFEVTKEWAEPLGLTAQLFISGSSQKRQIE---------RLKKG 115

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227
              I                       +  DE            +   +   P    ++ 
Sbjct: 116 PEIIIGTPGRIFELVRLKKIKMMAINTIILDEYDDLLSDSQYQFVQKLSHYAPRDHQMIY 175

Query: 228 SNTRRL 233
            +    
Sbjct: 176 MSATNK 181


>gi|317485973|ref|ZP_07944828.1| hypothetical protein HMPREF0179_02183 [Bilophila wadsworthia 3_1_6]
 gi|316922746|gb|EFV43977.1| hypothetical protein HMPREF0179_02183 [Bilophila wadsworthia 3_1_6]
          Length = 529

 Score = 38.4 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 41/131 (31%), Gaps = 11/131 (8%)

Query: 69  NVNNSNPTIFKCAISAGRGIGKTTLNA-WMMLWLISTRPGMSIICIANSETQLKNTLWAE 127
                 P   + AI+A RG  K+T  + + +LW + T     I+ IA++  Q  + L A 
Sbjct: 59  PRMADAPEGVRLAIAAPRGEAKSTFVSLFFVLWAVLTGRKHYILIIADALEQAASLLGA- 117

Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187
                  +     F        P      +      +   +  I      +       GP
Sbjct: 118 -------VKDELEFNEALKRDFPGVGKGHVWNVGTVVTPGNVKIQALGAGKRMRGLRHGP 170

Query: 188 HNTHGMAVFND 198
           H      +  D
Sbjct: 171 HR--PDLIVLD 179


>gi|302798078|ref|XP_002980799.1| hypothetical protein SELMODRAFT_113365 [Selaginella moellendorffii]
 gi|300151338|gb|EFJ17984.1| hypothetical protein SELMODRAFT_113365 [Selaginella moellendorffii]
          Length = 1015

 Score = 38.4 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 65/207 (31%), Gaps = 16/207 (7%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            A++A RG GK+      +   ++     +I   A S   LK  L+  V K    L ++ 
Sbjct: 279 VALTASRGRGKSAALGLAIAGAVAFGY-SNIFVTAPSPENLKT-LFEFVCKGFDALEYKE 336

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +   +      +   ++  ++    +      +     +              +  DE
Sbjct: 337 HIDYDLVQSTNPAFNKAVVRVNIFRQHRQTIQYIQPQDHAK--------LAQAELLIIDE 388

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
           A+  P  + K++LG +       F   T N     G    +  I     +       +V 
Sbjct: 389 AAAIPLPMVKALLGPYL-----VFMCSTVNGYEGTGRSLSLKLIQQLRSQGKSESAPSV- 442

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILG 286
             +    E I    G   +    E+L 
Sbjct: 443 FREVELAEPIRYGAGDPIEGWLHELLC 469


>gi|213403958|ref|XP_002172751.1| DEAD/DEAH box helicase [Schizosaccharomyces japonicus yFS275]
 gi|212000798|gb|EEB06458.1| DEAD/DEAH box helicase [Schizosaccharomyces japonicus yFS275]
          Length = 1722

 Score = 38.4 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/155 (9%), Positives = 43/155 (27%), Gaps = 19/155 (12%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P +WQ + ++ +D                  + A    GKT ++ + M  ++       +
Sbjct: 742 PDKWQRDTLDILDRDES------------VFVVAPTSAGKTFISFYAMEKVLRDNDEGVV 789

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           I +A ++  +        +++    PH         +           +  + +    + 
Sbjct: 790 IYVAPTKALVNQLSAEVYARFNKRYPHAGQTVWSVYTRDYRINNPTNCQVLITV---PHV 846

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
           +          + +          +  DE      
Sbjct: 847 LQSMLLQPALANAW----CPKIRRIIFDEIHSIGQ 877


>gi|75676132|ref|YP_318553.1| CRISPR-associated helicase Cas3 family protein protein [Nitrobacter
           winogradskyi Nb-255]
 gi|74421002|gb|ABA05201.1| CRISPR-associated helicase, Cas3 family [Nitrobacter winogradskyi
           Nb-255]
          Length = 744

 Score = 38.4 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 41/162 (25%), Gaps = 13/162 (8%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +  H  +   N  P +F   +    G GKT  +    L          II      + +
Sbjct: 231 DILAHVRAGALN-EPGLFTLNV--PTGGGKTLASLGFALAHARKWDHRRIIYAIPFTSIV 287

Query: 121 -------KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173
                  ++ L  +              E +           +     +   +  +  + 
Sbjct: 288 DQTAAIFRDILGEDNVLEHHSAIDEEHIEERWGRDKLKLAMQDWAAPVVVTTNVQFFESL 347

Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
                 R       HN  G  +  DEA   P  + K  +   
Sbjct: 348 FAARTSRA---RKLHNIAGSIIILDEAQTIPRPLLKPCVRML 386


>gi|19114238|ref|NP_593326.1| N-acetyltransferase Nat10 (predicted) [Schizosaccharomyces pombe
           972h-]
 gi|3219939|sp|P87115|YDK9_SCHPO RecName: Full=UPF0202 protein C20G8.09c
 gi|2094864|emb|CAB08603.1| N-acetyltransferase Nat10 (predicted) [Schizosaccharomyces pombe]
          Length = 1033

 Score = 38.4 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 10/125 (8%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            +++AGRG GK+      +          +I   + S   LK  L+  + K    L +  
Sbjct: 278 VSLTAGRGRGKSAALGLAIA-AAIAHGYSNIFITSPSPENLKT-LFEFIFKGFDALNYEE 335

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +   +      ++  ++  ++  D +      +T     P+            V  DE
Sbjct: 336 HVDYDIIQSTNPAYHNAIVRVNIFRDHR------QTIQYISPEDSNVLG--QAELVVIDE 387

Query: 200 ASGTP 204
           A+  P
Sbjct: 388 AAAIP 392


>gi|116194167|ref|XP_001222896.1| hypothetical protein CHGG_06801 [Chaetomium globosum CBS 148.51]
 gi|88182714|gb|EAQ90182.1| hypothetical protein CHGG_06801 [Chaetomium globosum CBS 148.51]
          Length = 2103

 Score = 38.4 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 48/185 (25%), Gaps = 14/185 (7%)

Query: 15   LHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSN 74
            L   L     +     F +  FP G +     H       Q    + V  H    V+  +
Sbjct: 1622 LSNQLWKETKLAHPLGFDVGDFPDGAEDTLSPH-------QRLIYDMVMTHDQQTVDGLH 1674

Query: 75   PTIFKCAISAGRGIGKTTLNAWMMLWLI-----STRPGMS--IICIANSETQLKNTLWAE 127
            P   +  I    G GK+     +   L        RP     +I  A +           
Sbjct: 1675 PPPLRLNIDGRGGSGKSYAIKLISAHLYKRAVQQARPDAENIVIRSAPTGVAANGIQGTT 1734

Query: 128  VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187
            +   L +      FE  S     +        + + ID K           +     + P
Sbjct: 1735 LHSLLRLPVGIVAFEPLSPPDVAAAQARLQSLKYLVIDEKSMISLKTMGFIDNRLRQIFP 1794

Query: 188  HNTHG 192
             +   
Sbjct: 1795 RSNEP 1799


>gi|115524887|ref|YP_781798.1| UvrD/REP helicase [Rhodopseudomonas palustris BisA53]
 gi|115518834|gb|ABJ06818.1| UvrD/REP helicase [Rhodopseudomonas palustris BisA53]
          Length = 700

 Score = 38.4 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 27/274 (9%), Positives = 71/274 (25%), Gaps = 16/274 (5%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             + AG G GKT   A  +  L+        + +     +  + +   V +         
Sbjct: 46  LLVIAGAGSGKTNTLAHRVAHLLVHGADPRRLLLMTFSRRAASEMIRRVERIARKAIGEP 105

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
              M         ++            +       T  +      +     H +     E
Sbjct: 106 AAIMTGAMSWAGTFHGVGARLLRERAEQLGLDPGFTIHDREDAADLINLVRHQLGFSKTE 165

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
           +         SI             ++         WF        E  + +       +
Sbjct: 166 SRFPTKGTCLSIYSRCVNAEAPIEQVL-------GSWFPWCAGWATELKQLFAGYVEAKQ 218

Query: 260 GIDSGFHEGIISRY--GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317
             +   ++ ++  +   +       ++  +F    V+ +   N ++ ++      D    
Sbjct: 219 QQNVLDYDDLLLYWAQAMRDPSFAADLASRFDHVLVDEYQDTNALQSSILLALKPDGIGL 278

Query: 318 LIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351
            ++       G D   +   R   + +I D+  +
Sbjct: 279 TVV-------GDDAQSIYAFRAATVRNILDFPNQ 305


>gi|321265578|ref|XP_003197505.1| nucleolus protein [Cryptococcus gattii WM276]
 gi|317463985|gb|ADV25718.1| Nucleolus protein, putative [Cryptococcus gattii WM276]
          Length = 1070

 Score = 38.4 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 37/125 (29%), Gaps = 10/125 (8%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            A++AGRG GK+      +          +I   +     LK  L+  V K L  L +  
Sbjct: 279 VALTAGRGRGKSAALGLAIG-AALAHDYSNIFVTSPDPENLKT-LFEFVFKALDALGYEE 336

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +   +      +   ++  ++    +                           V  DE
Sbjct: 337 HIDYDVVQSTNPDFKKAIVRVNIFRGHRQTIQYISPEDSHVLGQAE--------LVIIDE 388

Query: 200 ASGTP 204
           A+  P
Sbjct: 389 AAAIP 393


>gi|322804372|emb|CBZ01922.1| DNA helicase [Clostridium botulinum H04402 065]
          Length = 1350

 Score = 38.4 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 7/102 (6%), Positives = 32/102 (31%), Gaps = 6/102 (5%)

Query: 40  IKGKPLEHFSQPHRWQL---EFMEAV-DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95
            + +  + +    +W+    + +  +       ++           +    G GK+   A
Sbjct: 239 EEKEIEDDYIHKDQWKECKEDILFPLDANEEQISIVKKICENEAILVQGPPGTGKSHTIA 298

Query: 96  WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
            ++   ++   G  ++  + +   L+  +         +  +
Sbjct: 299 NLICHFLAH--GKKVLITSETSRALRVLINKIPKDIKPLCVN 338


>gi|170759897|ref|YP_001785430.1| hypothetical protein CLK_3276 [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406886|gb|ACA55297.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 1350

 Score = 38.4 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 7/102 (6%), Positives = 32/102 (31%), Gaps = 6/102 (5%)

Query: 40  IKGKPLEHFSQPHRWQL---EFMEAV-DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95
            + +  + +    +W+    + +  +       ++           +    G GK+   A
Sbjct: 239 EEKEIEDDYIHKDQWKECKEDILFPLDANEEQISIVKKICENEAILVQGPPGTGKSHTIA 298

Query: 96  WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
            ++   ++   G  ++  + +   L+  +         +  +
Sbjct: 299 NLICHFLAH--GKKVLITSETSRALRVLINKIPKDIKPLCVN 338


>gi|168177433|ref|ZP_02612097.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
 gi|182670417|gb|EDT82391.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
          Length = 1350

 Score = 38.4 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 7/102 (6%), Positives = 32/102 (31%), Gaps = 6/102 (5%)

Query: 40  IKGKPLEHFSQPHRWQL---EFMEAV-DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95
            + +  + +    +W+    + +  +       ++           +    G GK+   A
Sbjct: 239 EEKEIEDDYIHKDQWKECKEDILFPLDANEEQISIVKKICENEAILVQGPPGTGKSHTIA 298

Query: 96  WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
            ++   ++   G  ++  + +   L+  +         +  +
Sbjct: 299 NLICHFLAH--GKKVLITSETSRALRVLINKIPKDIKPLCVN 338


>gi|153824647|ref|ZP_01977314.1| type I restriction-modification system, R subunit [Vibrio cholerae
           MZO-2]
 gi|149741865|gb|EDM55894.1| type I restriction-modification system, R subunit [Vibrio cholerae
           MZO-2]
          Length = 825

 Score = 38.4 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/190 (11%), Positives = 47/190 (24%), Gaps = 26/190 (13%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST- 104
                P  +QL+ +        +  N       +  +    G GKT   A+ ++W +   
Sbjct: 175 GSGKSPRYYQLQAINKTVEAVAAGQN-------RVLLVMATGTGKTY-TAFQIIWRLWKS 226

Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
           R    I+ +A+     +N L  +                      P+             
Sbjct: 227 RAKKRILFLAD-----RNILVDQTK------------TNDFQPFGPAMTKVTGRTVDPAY 269

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224
           +         T  EE    +          +  DE        + +              
Sbjct: 270 EIHLALYQALTGPEEHQKAYKQVDPDFFDLIVVDECHRGSAAEDSAWREILEYFGSATQI 329

Query: 225 IMTSNTRRLN 234
            +T+  +  +
Sbjct: 330 GLTATPKETD 339


>gi|148378108|ref|YP_001252649.1| hypothetical protein CBO0101 [Clostridium botulinum A str. ATCC
           3502]
 gi|153933124|ref|YP_001382508.1| hypothetical protein CLB_0137 [Clostridium botulinum A str. ATCC
           19397]
 gi|153937141|ref|YP_001386060.1| hypothetical protein CLC_0149 [Clostridium botulinum A str. Hall]
 gi|148287592|emb|CAL81657.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152929168|gb|ABS34668.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152933055|gb|ABS38554.1| conserved hypothetical protein [Clostridium botulinum A str. Hall]
          Length = 1350

 Score = 38.4 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 7/102 (6%), Positives = 32/102 (31%), Gaps = 6/102 (5%)

Query: 40  IKGKPLEHFSQPHRWQL---EFMEAV-DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95
            + +  + +    +W+    + +  +       ++           +    G GK+   A
Sbjct: 239 EEKEIEDDYIHKDQWKECKEDILFPLDANEEQISIVKKICENEAILVQGPPGTGKSHTIA 298

Query: 96  WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
            ++   ++   G  ++  + +   L+  +         +  +
Sbjct: 299 NLICHFLAH--GKKVLITSETSRALRVLINKIPKDIKPLCVN 338


>gi|258654733|ref|YP_003203889.1| type I site-specific deoxyribonuclease, HsdR family [Nakamurella
           multipartita DSM 44233]
 gi|258557958|gb|ACV80900.1| type I site-specific deoxyribonuclease, HsdR family [Nakamurella
           multipartita DSM 44233]
          Length = 1028

 Score = 38.4 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/161 (10%), Positives = 40/161 (24%), Gaps = 17/161 (10%)

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICI--ANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           +G GK+    W+  W+   +P   ++ +       +    ++  V++ +           
Sbjct: 276 QGSGKSLTMVWLAKWIREHQPDARVLLVTDRTELDEQIEKVFNGVNEQIYRTTSGADLLD 335

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY-SEERPDTFVGPHNTHGMAVFNDEASG 202
                      + + +     D K        +  E              + VF DEA  
Sbjct: 336 TLNKSQEWLICSLVHKFRGSDDDKALDQAGEDFIRELNAKIPKDFKAKGNLFVFVDEAHR 395

Query: 203 -------------TPDIINKSILGF-FTELNPNRFWIMTSN 229
                         P+ +     G    + +          
Sbjct: 396 TQSGKMHQAMKQLMPEAMFIGFTGTPLLKTDKETSIETFGT 436


>gi|85712760|ref|ZP_01043804.1| General secretion pathway protein, ATPase [Idiomarina baltica
           OS145]
 gi|85693400|gb|EAQ31354.1| General secretion pathway protein, ATPase [Idiomarina baltica
           OS145]
          Length = 309

 Score = 38.4 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/188 (11%), Positives = 45/188 (23%), Gaps = 7/188 (3%)

Query: 90  KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLH 149
           K+   A  ++          I       T  K  L     + L  +P   +      S  
Sbjct: 26  KSHDQAAKVVLTALNTGEGFIKVTGEVGTG-KTLLCR---RLLEEIPDYFYTAYVPDSYL 81

Query: 150 PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209
                   + Q +G+++             +       H    + +  DEA   P+   +
Sbjct: 82  NPDQLRRAVAQELGVETADIESEHPLARALQDKLLEINHAGRAVVLIVDEAQALPEDSLE 141

Query: 210 SIL---GFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFH 266
           ++       TE       I+              F    +        T       + + 
Sbjct: 142 ALRLLSNLETESRKLLHIILVGQPELDERLAQHNFRQLRQRISFSHRLTAMNARETAQYI 201

Query: 267 EGIISRYG 274
              +   G
Sbjct: 202 GHRMRIAG 209


>gi|229496387|ref|ZP_04390104.1| CRISPR-associated helicase Cas3 domain protein [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316706|gb|EEN82622.1| CRISPR-associated helicase Cas3 domain protein [Porphyromonas
           endodontalis ATCC 35406]
          Length = 750

 Score = 38.4 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 68/240 (28%), Gaps = 21/240 (8%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           K  PL H       + EF++   +H     ++ +P+I+   +    G GKT  +    L 
Sbjct: 215 KDSPLNHA------RAEFLQKCRIH----GSSHDPSIYSLFL--PTGGGKTLSSMAWALE 262

Query: 101 LISTRPGMSIICIANSETQLKNT--LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
                    II +    + +  T  ++ ++     +L H    +M     +   W     
Sbjct: 263 SAIRNDSSRIIYVIPYTSIITQTAEIFKQIFGEEYVLEHHSELDMGDNEEYDR-WKLLTE 321

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE- 217
                I          +    R       HN     +  DE    P  +   +L      
Sbjct: 322 NWDAPIIITTNVQMFESLYASRTSRCRKLHNICNSVIVFDEVQMFPSALLNPMLRAVESL 381

Query: 218 ---LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYG 274
               N N      +    +    +++      ++   QI+   V   D            
Sbjct: 382 SLCFNANILLCTATQP--VFTQSFEVAGRESSNFYSIQIEIEDVVLYDKELFSAFERVRY 439


>gi|237798821|ref|ZP_04587282.1| ATP-dependent DNA helicase DinG [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021674|gb|EGI01731.1| ATP-dependent DNA helicase DinG [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 357

 Score = 38.4 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 28/101 (27%), Gaps = 5/101 (4%)

Query: 51  PHRWQL----EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
           P   Q     E  + +           +      A+ AG G GKT   A   +       
Sbjct: 25  PRYGQRLMIAEVAKVLGDIDTDEEGRRSGDPAVVAVEAGTGTGKTVAYAIAAIPTAKAAG 84

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
              +I  A    Q +  ++ ++   +        F +    
Sbjct: 85  KRLVIATATVALQ-EQIVYKDLPDLMRNSGLNFTFALAKGR 124


>gi|221369953|ref|YP_002521049.1| hypothetical protein RSKD131_4116 [Rhodobacter sphaeroides KD131]
 gi|221163005|gb|ACM03976.1| Hypothetical Protein RSKD131_4116 [Rhodobacter sphaeroides KD131]
          Length = 791

 Score = 38.4 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 59/244 (24%), Gaps = 13/244 (5%)

Query: 68  SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLW 125
                  P   +  + AG G GKT +    ++ L+         I+ ++ +   +   L 
Sbjct: 217 QLRVAHAPAGTRMLVEAGPGSGKTHVACERVISLVQDEGIAPSRILLLSFTRIAVAE-LR 275

Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185
             + + L+ +P+    ++++     +   +     S G          R    + P    
Sbjct: 276 DRIGRRLNEVPNVAALQIRTFDSFAARLLSSAGVGSSGGHDASIRAATRLLRSDDPLVAD 335

Query: 186 GPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL 245
                    V  DEA        +        L+P     +              +    
Sbjct: 336 AIG--QLEHVVIDEAQDLVGDRKEMCEALLALLDPGCGVTVFG----DFAQAIYGYQHKG 389

Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRY----GLDSDVARIEILGQFPQQEVNNFIPHNY 301
                +  +            E                 R  + G       + F     
Sbjct: 390 NPRATFLSEVAKRPDFTCDQLERDHRTRTAALKEMFRTVRQTLRGDPAGSRDSYFRVREE 449

Query: 302 IEEA 305
           I  A
Sbjct: 450 IRAA 453


>gi|153930606|ref|YP_001393242.1| conjugal transfer protein TrbB [Yersinia pseudotuberculosis IP
           31758]
 gi|152958150|gb|ABS45613.1| conjugal transfer protein TrbB [Yersinia pseudotuberculosis IP
           31758]
          Length = 366

 Score = 38.4 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 22/57 (38%)

Query: 62  VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118
           +  H    + N+        +  G G GKTTL   ++  ++   P   +  I ++  
Sbjct: 180 MTAHQSEVIRNAIRDHRNILVIGGTGSGKTTLVNAIINEMVVFDPSERVFIIEDTGE 236


>gi|58262276|ref|XP_568548.1| nucleolus protein [Cryptococcus neoformans var. neoformans JEC21]
 gi|57230722|gb|AAW47031.1| nucleolus protein, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1069

 Score = 38.4 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 37/125 (29%), Gaps = 10/125 (8%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            A++AGRG GK+      +          +I   +     LK  L+  V K L  L +  
Sbjct: 279 VALTAGRGRGKSAALGLAIG-AALAHDYSNIFVTSPDPENLKT-LFEFVFKALDALGYEE 336

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +   +      +   ++  ++    +                           V  DE
Sbjct: 337 HIDYDVVQSTNPDFKKAIVRVNIFRGHRQTIQYISPEDSHVLGQAE--------LVIIDE 388

Query: 200 ASGTP 204
           A+  P
Sbjct: 389 AAAIP 393


>gi|268532354|ref|XP_002631305.1| C. briggsae CBR-DNA-2 protein [Caenorhabditis briggsae]
          Length = 1071

 Score = 38.4 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 36/124 (29%), Gaps = 11/124 (8%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH--------R 138
           G GKTTL + ++           ++  A + + + N L     +  +            +
Sbjct: 679 GSGKTTLISVLI--QCLVATNKKVLLTAFTHSAVDNILGKLTKEVSNEKILRLGSSSTIK 736

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
                 +L     G  +E    ++    K             P   +     H   V  D
Sbjct: 737 DDVRTLTLKSKLEGETSEDYYVAVRRVMKTTVPIVACTCHHVP-RELLFSYRHFDVVIID 795

Query: 199 EASG 202
           EAS 
Sbjct: 796 EASM 799


>gi|134118842|ref|XP_771924.1| hypothetical protein CNBN1040 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50254528|gb|EAL17277.1| hypothetical protein CNBN1040 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 1069

 Score = 38.4 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 37/125 (29%), Gaps = 10/125 (8%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            A++AGRG GK+      +          +I   +     LK  L+  V K L  L +  
Sbjct: 279 VALTAGRGRGKSAALGLAIG-AALAHDYSNIFVTSPDPENLKT-LFEFVFKALDALGYEE 336

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +   +      +   ++  ++    +                           V  DE
Sbjct: 337 HIDYDVVQSTNPDFKKAIVRVNIFRGHRQTIQYISPEDSHVLGQAE--------LVIIDE 388

Query: 200 ASGTP 204
           A+  P
Sbjct: 389 AAAIP 393


>gi|328466480|gb|EGF37623.1| ATP-dependent RNA helicase [Listeria monocytogenes 1816]
          Length = 396

 Score = 38.4 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 34/152 (22%), Gaps = 11/152 (7%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +WQ    E       S +             +  G GKT   A   L  I   P    +
Sbjct: 12  EKWQEHGYETPTE-IQSAMYQPIKDGADVLAVSPTGTGKTVAYALPTLEKIEAIPKTQWL 70

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +A S   +                 R W     L++      A +  Q   +  K   I
Sbjct: 71  VLAPSHELVMQITE----------VIRSWLPSDELTVISLIGGANVKRQIEKLKKKPQII 120

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
                                  +  DE    
Sbjct: 121 VASPGRALELIKQKKIKMHEIKTITLDECDQL 152


>gi|217964128|ref|YP_002349806.1| helicase domain protein [Listeria monocytogenes HCC23]
 gi|217333398|gb|ACK39192.1| helicase domain protein [Listeria monocytogenes HCC23]
 gi|307571305|emb|CAR84484.1| ATP-dependent RNA helicase [Listeria monocytogenes L99]
          Length = 442

 Score = 38.4 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 34/152 (22%), Gaps = 11/152 (7%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +WQ    E       S +             +  G GKT   A   L  I   P    +
Sbjct: 12  EKWQEHGYETPTE-IQSAMYQPIKDGADVLAVSPTGTGKTVAYALPTLEKIEAIPKTQWL 70

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +A S   +                 R W     L++      A +  Q   +  K   I
Sbjct: 71  VLAPSHELVMQITE----------VIRSWLPSDELTVISLIGGANVKRQIEKLKKKPQII 120

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
                                  +  DE    
Sbjct: 121 VASPGRALELIKQKKIKMHEIKTITLDECDQL 152


>gi|254932833|ref|ZP_05266192.1| helicase domain-containing protein [Listeria monocytogenes HPB2262]
 gi|293584386|gb|EFF96418.1| helicase domain-containing protein [Listeria monocytogenes HPB2262]
 gi|332312163|gb|EGJ25258.1| Helicase domain protein [Listeria monocytogenes str. Scott A]
          Length = 442

 Score = 38.4 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 34/152 (22%), Gaps = 11/152 (7%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +WQ    E       S +             +  G GKT   A   L  I   P    +
Sbjct: 12  EKWQEHGYETPTE-IQSAMYQPIKDGADVLAVSPTGTGKTVAYALPTLEKIEAIPKTQWL 70

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +A S   +                 R W     L++      A +  Q   +  K   I
Sbjct: 71  VLAPSHELVMQITE----------VIRSWLPSDELTVISLIGGANVKRQIEKLKKKPQII 120

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
                                  +  DE    
Sbjct: 121 VASPGRALELIKQKKIKMHEIKTITLDECDQL 152


>gi|11863101|ref|NP_071818.1| putative large terminase subunit [Methanothermobacter phage
           psiM100]
 gi|11692721|gb|AAG39957.1|AF301375_17 putative large terminase subunit [Methanothermobacter phage
           psiM100]
          Length = 467

 Score = 38.4 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 49/194 (25%), Gaps = 16/194 (8%)

Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208
              G  AE  EQ               + E   D +     +    +  DE +   +   
Sbjct: 126 WLGGTDAEWNEQKKRWTFPSGAALQFGHMEHEKDRYRY-QGSSYHYIAFDELTEFLESQY 184

Query: 209 KSILGFFTELNPNRFWI---MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265
           + +     +   +   +    TSN     G  +        +        R    ++   
Sbjct: 185 RFMFRSLRKEADDPIPLRFRATSNP-GGIGHEWVKTRFITGEKTFIPSTWRENPYLNRDE 243

Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
           +E  ++    D    R    G +            + E     +         +   D+A
Sbjct: 244 YEEALNML--DHVTRRQLKEGDWDVSIQGGVFRREWFE---IIDTPPHDLVMKLRYWDLA 298

Query: 326 ---GEGG---DKTV 333
               +G    D TV
Sbjct: 299 ATPHDGSNDPDYTV 312


>gi|8489871|gb|AAF75791.1|AF271892_1 DEAD box protein P68 [Pisum sativum]
          Length = 622

 Score = 38.4 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 48/166 (28%), Gaps = 24/166 (14%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGR--------GIGKTTLNAWMMLWLISTRPGMS 109
            M+ +  H ++  ++        A+ +GR        G GKT      ML     +P + 
Sbjct: 129 IMKDIAYHEYTRPSSIQAQAMPIAL-SGRDLLGCAETGSGKTAAFTIPMLQHCLVQPPIR 187

Query: 110 ------IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
                  + +A +          E+++ +          ++SL          + +Q   
Sbjct: 188 RGDGPLALVLAPT---------RELAQQIEKEVQAFSRSLESLKNCIVVGGTNIEKQRSE 238

Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209
           + +                       +    V  DEA    D+  +
Sbjct: 239 LRAGVEIAVATPGRFIDHLQQGNTSLSRISYVVLDEADRMLDMGFE 284


>gi|46907952|ref|YP_014341.1| helicase domain-containing protein [Listeria monocytogenes serotype
           4b str. F2365]
 gi|254826031|ref|ZP_05231032.1| helicase domain-containing protein [Listeria monocytogenes FSL
           J1-194]
 gi|254992802|ref|ZP_05274992.1| ATP-dependent RNA helicase [Listeria monocytogenes FSL J2-064]
 gi|255520798|ref|ZP_05388035.1| ATP-dependent RNA helicase [Listeria monocytogenes FSL J1-175]
 gi|46881222|gb|AAT04518.1| helicase domain protein [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|293595270|gb|EFG03031.1| helicase domain-containing protein [Listeria monocytogenes FSL
           J1-194]
          Length = 442

 Score = 38.4 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 34/152 (22%), Gaps = 11/152 (7%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +WQ    E       S +             +  G GKT   A   L  I   P    +
Sbjct: 12  EKWQEHGYETPTE-IQSAMYQPIKDGADVLAVSPTGTGKTVAYALPTLEKIEAIPKTQWL 70

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +A S   +                 R W     L++      A +  Q   +  K   I
Sbjct: 71  VLAPSHELVMQITE----------VIRSWLPSDELTVISLIGGANVKRQIEKLKKKPQII 120

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
                                  +  DE    
Sbjct: 121 VASPGRALELIKQKKIKMHEIKTITLDECDQL 152


>gi|83945168|ref|ZP_00957517.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicaulis alexandrii HTCC2633]
 gi|83851338|gb|EAP89194.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicaulis alexandrii HTCC2633]
          Length = 466

 Score = 38.4 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 29/257 (11%), Positives = 51/257 (19%), Gaps = 36/257 (14%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKC--AISAGR--------GIGKTTLNAWMMLWLIST--- 104
            + A+            P   +   A+  G         G GKT      ++  +     
Sbjct: 30  ILTAISEQ---GYETPTPIQARAIPAVMKGHDLIGLAQTGTGKTAAFVLPLVHQLLAENK 86

Query: 105 ---RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
                    + +A +          E  K  +            L+        +   Q 
Sbjct: 87  QAPGRSCRALILAPTRELAAQI--EEQVKAYT--------AHTKLTSTVVFGGVKAGPQI 136

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNP 220
             +      +                       V  DEA    D     +I      +  
Sbjct: 137 KALARGVDILVATPGRLLDHLGERKARLDLTRFVILDEADQMLDLGFIPAIRKLLRMVGE 196

Query: 221 NRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280
            R  +M S T               +D+  +                     Y   S   
Sbjct: 197 ERQTLMFSATMAPA------IRQLADDFLDHPETVAVTPPSKPVERIDQKVFYTEASAKP 250

Query: 281 RIEILGQFPQQEVNNFI 297
              I    P+      I
Sbjct: 251 DALIDLMAPEAGKRAII 267


>gi|47094340|ref|ZP_00232038.1| helicase domain protein [Listeria monocytogenes str. 4b H7858]
 gi|226224325|ref|YP_002758432.1| ATP-dependent RNA helicase [Listeria monocytogenes Clip81459]
 gi|300764661|ref|ZP_07074652.1| hypothetical protein LMHG_11104 [Listeria monocytogenes FSL N1-017]
 gi|47017283|gb|EAL08118.1| helicase domain  protein [Listeria monocytogenes str. 4b H7858]
 gi|225876787|emb|CAS05496.1| Putative ATP-dependent RNA helicase [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|300514547|gb|EFK41603.1| hypothetical protein LMHG_11104 [Listeria monocytogenes FSL N1-017]
          Length = 442

 Score = 38.4 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 34/152 (22%), Gaps = 11/152 (7%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            +WQ    E       S +             +  G GKT   A   L  I   P    +
Sbjct: 12  EKWQEHGYETPTE-IQSAMYQPIKDGADVLAVSPTGTGKTVAYALPTLEKIEAIPKTQWL 70

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +A S   +                 R W     L++      A +  Q   +  K   I
Sbjct: 71  VLAPSHELVMQITE----------VIRSWLPSDELTVISLIGGANVKRQIEKLKKKPQII 120

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
                                  +  DE    
Sbjct: 121 VASPGRALELIKQKKIKMHEIKTITLDECDQL 152


>gi|304383829|ref|ZP_07366287.1| DNA helicase [Prevotella marshii DSM 16973]
 gi|304335085|gb|EFM01357.1| DNA helicase [Prevotella marshii DSM 16973]
          Length = 1174

 Score = 38.4 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 36/138 (26%), Gaps = 4/138 (2%)

Query: 87  GIGKTTLNAWMML--WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144
           G GKT++    ++   L +     SI+  A +   +           L  +   + +   
Sbjct: 738 GTGKTSMALQYLVKEELATDGTDASILLTAYTNRAVDEICGMLADTHLPFIRLGNAYTCD 797

Query: 145 S--LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
              L         +  ++S   +    T      +                    DEA  
Sbjct: 798 QRFLPYLLRQAVDDCPQRSAVRERLLSTPIIVGTTSTLQSRPFLFDLKRFSLAIVDEAGQ 857

Query: 203 TPDIINKSILGFFTELNP 220
            P+     +L      + 
Sbjct: 858 IPEPGLIGLLASHRGSDA 875


>gi|154247228|ref|YP_001418186.1| double-strand break repair helicase AddA [Xanthobacter
           autotrophicus Py2]
 gi|154161313|gb|ABS68529.1| Double-strand break repair helicase AddA [Xanthobacter
           autotrophicus Py2]
          Length = 1167

 Score = 38.4 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR-PGMSIICIAN 115
           +             + ++   F   +SA  G GKT + A  ++ L+    P   I+C+  
Sbjct: 12  DAARDPKSEATRRQSEASHPAFSAWVSANAGSGKTHVLARRVIRLLLAGTPPGRILCLTY 71

Query: 116 SETQLKNT---LWAEVSKWLSM 134
           ++    N    + A + +W+ +
Sbjct: 72  TKAAAANMANRVLAILGRWVRL 93


>gi|116200864|ref|XP_001226244.1| hypothetical protein CHGG_10977 [Chaetomium globosum CBS 148.51]
 gi|88175691|gb|EAQ83159.1| hypothetical protein CHGG_10977 [Chaetomium globosum CBS 148.51]
          Length = 1863

 Score = 38.4 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 48/185 (25%), Gaps = 14/185 (7%)

Query: 15   LHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSN 74
            L   L     +     F +  FP G +     H       Q    + V  H    V+  +
Sbjct: 1426 LSNQLWKETKLAHPLGFDVGDFPDGAEDTLSPH-------QRLIYDMVMTHDQQTVDGLH 1478

Query: 75   PTIFKCAISAGRGIGKTTLNAWMMLWLI-----STRPGMS--IICIANSETQLKNTLWAE 127
            P   +  I    G GK+     +   L        RP     +I  A +           
Sbjct: 1479 PPPLRLNIDGRGGSGKSYAIKLISAHLYKRAVQQARPDAENIVIRSAPTGVAANGIQGTT 1538

Query: 128  VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187
            +   L +      FE  S     +        + + ID K           +     + P
Sbjct: 1539 LHSLLRLPVGIVAFEPLSPPDVAAAQARLQSLKYLVIDEKSMISLKTMGFIDNRLRQIFP 1598

Query: 188  HNTHG 192
             +   
Sbjct: 1599 RSNEP 1603


>gi|213404684|ref|XP_002173114.1| N-acetyltransferase Nat10 [Schizosaccharomyces japonicus yFS275]
 gi|212001161|gb|EEB06821.1| N-acetyltransferase Nat10 [Schizosaccharomyces japonicus yFS275]
          Length = 1034

 Score = 38.4 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 44/147 (29%), Gaps = 19/147 (12%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
           F+E++                  +++AGRG GK+      +          +I   + S 
Sbjct: 265 FIESIAEKSLRGT---------VSLTAGRGRGKSAALGLAIA-AAVGHGYSNIFITSPSP 314

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
             LK  L+  V K    L +    +   +      +   ++  ++  D +      R   
Sbjct: 315 ENLKT-LFEFVFKGFDALKYEEHIDYDIIQSTNPAFNNAIVRVNIFRDHRQTIQYIRPED 373

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTP 204
                            V  DEA+  P
Sbjct: 374 AHVLGQAE--------LVIIDEAAAIP 392


>gi|213409063|ref|XP_002175302.1| DNA replication ATP-dependent helicase dna2 [Schizosaccharomyces
           japonicus yFS275]
 gi|212003349|gb|EEB09009.1| DNA replication ATP-dependent helicase dna2 [Schizosaccharomyces
           japonicus yFS275]
          Length = 1178

 Score = 38.4 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 35/118 (29%), Gaps = 3/118 (2%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKTT  A ++  L+S   G S++  + + T + N L         +L      ++   
Sbjct: 745 GTGKTTTIACLIHTLVSN--GKSVLLSSYTHTAVDNILLKLKQFNFPILRLGSKSKVLPE 802

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                    +     + +   +        S                    DEAS  P
Sbjct: 803 VFSFCFGEHDTASDDITVKKIYEEPLIVATSCLGIQHP-LFSKRKFDYCLIDEASQIP 859


>gi|145631236|ref|ZP_01787009.1| DNA helicase II [Haemophilus influenzae R3021]
 gi|144983163|gb|EDJ90658.1| DNA helicase II [Haemophilus influenzae R3021]
          Length = 726

 Score = 38.4 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 82/302 (27%), Gaps = 29/302 (9%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIA 114
           E ++ ++   H  V           + AG G GKT +    + WLI+       SI+ + 
Sbjct: 5   ELLDGLNDKQHEAVAAPLGNH---LVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            +            S       H+ +          +          +G+      +   
Sbjct: 62  FTNKAAAEMRHRIQSTLAKHAQHQLFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSE 121

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
                     +  HN        DE +  P       +    +               + 
Sbjct: 122 -DQLRLIKRLLKLHN-------FDEKAF-PPKQACWYINNKKDEGLR--------PNDIE 164

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294
            +        ++ ++ YQ        +D       +        +       +F    V+
Sbjct: 165 DFNDRQEREWIKIYQIYQDTCDRAGLVDFAELLIRVYELFEKKPLILQRYQQRFQHILVD 224

Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354
            F   N I+     + +      +++  D      D++ +   RG  IE+I  +      
Sbjct: 225 EFQDTNKIQYK-WIKILAGKTGKVMIVGD-----DDQS-IYGWRGAQIENIQKFLKDFKA 277

Query: 355 ET 356
           ET
Sbjct: 278 ET 279


>gi|320582191|gb|EFW96409.1| Signal recognition particle (SRP) receptor-alpha subunit [Pichia
           angusta DL-1]
          Length = 550

 Score = 38.0 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/139 (10%), Positives = 40/139 (28%), Gaps = 5/139 (3%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
           + ++ +     SN           ++    G+GK+T  + +  WL+     + I      
Sbjct: 325 DLLKEIQAKKASNNLPYV-----ISVVGVNGVGKSTNLSKLAYWLLQNNYRVLITACDTF 379

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
            +     L   V+    + P +   E+       +   A++   ++    ++        
Sbjct: 380 RSGAVEQLRTHVNNLTKLSPDQKQIELFEGGYGGADLVAKIATGAIKYAKQNNFDIVLLD 439

Query: 177 SEERPDTFVGPHNTHGMAV 195
           +  R               
Sbjct: 440 TAGRRHNDTQLMAPLASFA 458


>gi|302539315|ref|ZP_07291657.1| TtrA [Streptomyces sp. C]
 gi|302448210|gb|EFL20026.1| TtrA [Streptomyces sp. C]
          Length = 888

 Score = 38.0 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 40/173 (23%), Gaps = 30/173 (17%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q   +         +      T  +  I +  G GKT   A   L      PG  I+   
Sbjct: 11  QKSAIRKWVGFPSRSPVPPQGT--RGTIVSATGSGKTITAAAGAL---ECFPGGRILVTV 65

Query: 115 NSETQLKNT--LWAEVSK--------------WLSMLPHRHWFEMQSLSLHPSGWYAELL 158
            +   L  T   W  V                 L+ L  R       L+L        + 
Sbjct: 66  PTLDLLAQTAQAWRLVGHKAPMIAVCSLENDPVLNELGVRTTTNPIQLALWAGAGPVVVF 125

Query: 159 EQSMGIDSKHYTITCRTYSEER---------PDTFVGPHNTHGMAVFNDEASG 202
                +  +          + R          +   G           DEA G
Sbjct: 126 ATYASLVDREDLDAPEGQRKVRGPLEAALTGGERLYGQQMAGFDLAIVDEAHG 178


>gi|317138411|ref|XP_001816888.2| DNA replication helicase Dna2 [Aspergillus oryzae RIB40]
          Length = 1671

 Score = 38.0 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 35/120 (29%), Gaps = 7/120 (5%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM--Q 144
            G GKTT  A ++        G S++  + + T + N L       + +L      ++  +
Sbjct: 1181 GTGKTTTIAHII--RALVSQGKSVLLTSYTHTAVDNILLKIRDDNIRILRIGAAAKVHPE 1238

Query: 145  SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                       +   + +    +   +   T        F             DEAS   
Sbjct: 1239 VQQFADLAAVPKNTIEELQGAYEDSQVVATTCLGIGHSIFSQ---RIFDYCIVDEASQIT 1295


>gi|298531185|ref|ZP_07018586.1| type III restriction protein res subunit [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509208|gb|EFI33113.1| type III restriction protein res subunit [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1041

 Score = 38.0 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 31/273 (11%), Positives = 69/273 (25%), Gaps = 39/273 (14%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           PH +Q   +E ++     N  + N       + A  G GKT + A+        +     
Sbjct: 309 PHPFQERILEELEQDRKVNNQHQN------LVVAATGTGKTVIAAFDFQRFFQRKQKQVK 362

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           +       ++           L           Q  +      +  +   +         
Sbjct: 363 LLFVAHRQEILEQAQDTFRNVLKDHNFGDLLVGQHQAEQVKHLFCSVSMITNRRL----- 417

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
                                   +  DEA         S    F    P     +T+  
Sbjct: 418 -------------GEQVGRDFYDFIIIDEAH---HGTAASYRPIFDNFEPEVLLGLTATP 461

Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFH-----EGIISRYGLDSDVARIEIL 285
            R++G      N+  +   R   + R  E ++          G+     L+ D       
Sbjct: 462 ERMDGE-----NVLADFGNRITSEIRLPEALEEKLLCPFHYFGVADPISLNEDRFWH--H 514

Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318
           G++   ++       +++     + + +     
Sbjct: 515 GRYNVAKLEKIYTGAHVQARQRLDVVLEALKRY 547


>gi|11602713|emb|CAC18543.1| translation initiation factor 4A-like protein [Echinococcus
           multilocularis]
          Length = 403

 Score = 38.0 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/164 (12%), Positives = 43/164 (26%), Gaps = 20/164 (12%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR--------GIGKTTLNAWMMLWLI-STR 105
           + + +  +  +     +       K  I  GR        G GKT   A   L ++    
Sbjct: 38  REDLLRGIYAYGFERPSAIQQRAIKQIIL-GRDVIAQAQSGTGKTATLAIASLQVLDIQL 96

Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
               ++ ++ +           + K + +L      +      H       + E    +D
Sbjct: 97  RDTQVLILSPTRELALQ-----IQKVILVLGDFMNVQC-----HACYGGTNVGEDIKKLD 146

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209
              + ++                      +  DEA    D   K
Sbjct: 147 YGQHIVSGTPGRVFDMIKRRNLRTRTIKLLILDEADEMLDKGFK 190


>gi|83764742|dbj|BAE54886.1| unnamed protein product [Aspergillus oryzae]
          Length = 1673

 Score = 38.0 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 35/120 (29%), Gaps = 7/120 (5%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM--Q 144
            G GKTT  A ++        G S++  + + T + N L       + +L      ++  +
Sbjct: 1183 GTGKTTTIAHII--RALVSQGKSVLLTSYTHTAVDNILLKIRDDNIRILRIGAAAKVHPE 1240

Query: 145  SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                       +   + +    +   +   T        F             DEAS   
Sbjct: 1241 VQQFADLAAVPKNTIEELQGAYEDSQVVATTCLGIGHSIFSQ---RIFDYCIVDEASQIT 1297


>gi|242077806|ref|XP_002448839.1| hypothetical protein SORBIDRAFT_06g034160 [Sorghum bicolor]
 gi|241940022|gb|EES13167.1| hypothetical protein SORBIDRAFT_06g034160 [Sorghum bicolor]
          Length = 1042

 Score = 38.0 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 50/220 (22%), Gaps = 29/220 (13%)

Query: 49  SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIG----------KTTLNAWMM 98
           S+P++   +  + +  H    +           +   RG G          KT   A  +
Sbjct: 321 SKPYKLPGKIFKMLFSHQREGLRW-------LWVLHCRGTGGILGDDMGLGKTMQVAAFL 373

Query: 99  LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
             L  +R    ++ +A        T    +      +           S      + E  
Sbjct: 374 AGLFHSRLVKRVLIVAPKTLLAHWTKELSIVGLKEKIRDYSGPSTNIRSYELQYAFKEGG 433

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218
                 D        +       +       T    +  DE     +   +     +   
Sbjct: 434 ILLTTYD--IVRNNYKLIRGNSYNNDDEEEGTLWNYIILDEGHLIKNNKTQRAQSLYEIP 491

Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
             +R  I              I N   E W  +      V
Sbjct: 492 CAHRIVIS-GTP---------IQNNLKEMWTLFNFCCPDV 521


>gi|330878860|gb|EGH13009.1| ATP-dependent DNA helicase DinG [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330966522|gb|EGH66782.1| ATP-dependent DNA helicase DinG [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 714

 Score = 38.0 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 28/101 (27%), Gaps = 5/101 (4%)

Query: 51  PHRWQL----EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
           P   Q     E  + +           +      A+ AG G GKT   A   +       
Sbjct: 25  PRYGQRLMIAEVAKVLGDIDTDEEGRRSGDPAVVAVEAGTGTGKTVAYAIAAIPTAKAAG 84

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
              +I  A    Q +  ++ ++   +        F +    
Sbjct: 85  KRLVIATATVALQ-EQIVYKDLPDLMRNSGLNFTFSLAKGR 124


>gi|302133680|ref|ZP_07259670.1| ATP-dependent DNA helicase DinG [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 714

 Score = 38.0 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 28/101 (27%), Gaps = 5/101 (4%)

Query: 51  PHRWQL----EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
           P   Q     E  + +           +      A+ AG G GKT   A   +       
Sbjct: 25  PRYGQRLMIAEVAKVLGDIDTDEEGRRSGDPAVVAVEAGTGTGKTVAYAIAAIPTAKAAG 84

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
              +I  A    Q +  ++ ++   +        F +    
Sbjct: 85  KRLVIATATVALQ-EQIVYKDLPDLMRNSGLNFTFSLAKGR 124


>gi|198423018|ref|XP_002125988.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
           [Ciona intestinalis]
          Length = 718

 Score = 38.0 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 25/241 (10%), Positives = 49/241 (20%), Gaps = 16/241 (6%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR----PGMSIIC 112
           E                          A  G GKT      +L  +  R    P   ++C
Sbjct: 188 EINYVTPTPIQQAAIPIGLLGRDICACAATGTGKTAAFMLPVLERLLYRTQSTPITRVLC 247

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           +  +                      H  +  +L +  +    ++  Q   +      + 
Sbjct: 248 LVPTRELAVQVY----------SVTHHLAQHSNLRICLAAGGLDMKSQEAALRQGPDIVI 297

Query: 173 CRTYSEERP-DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231
                                  +  DEA    D   +  +    +L  +    M  +  
Sbjct: 298 ATPGRLIDHLHNTPSFDLQMVEILILDEADRMLDEFFEDQMNEIIKLCSHHRQTMLFSAT 357

Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTV-EGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290
                            K +      V   +   F     +R G    +        F  
Sbjct: 358 MSEQVQELAAVSLKNPVKIFVNSNTDVAPFLRQEFIRIRETREGDREAIVAALCSRSFIS 417

Query: 291 Q 291
            
Sbjct: 418 N 418


>gi|124485672|ref|YP_001030288.1| hypothetical protein Mlab_0850 [Methanocorpusculum labreanum Z]
 gi|124363213|gb|ABN07021.1| metal dependent phosphohydrolase [Methanocorpusculum labreanum Z]
          Length = 834

 Score = 38.0 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 59/216 (27%), Gaps = 26/216 (12%)

Query: 38  WGIKGKPLEHF--SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95
           W    + L+ F   +P  + ++ +                 I++  +    G GKT  + 
Sbjct: 239 WEKLAENLDEFLDQKPIIYDIDELRKEISLSCKAFGKKTSGIYRLNV--PTGGGKTLSSL 296

Query: 96  WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155
              L   +      I  +    T + +     + + L         E  S  ++      
Sbjct: 297 RYALAHAAEWNKERIFYVIP-FTTIIDQNAKVIREALRE--DDLILEHHSNLVYEDPLDE 353

Query: 156 ELLEQSMGIDSKHYTITCRTYSE----------------ERPDTFVGPHNTHGMAVFNDE 199
                +   + ++Y +    +                   +  +    HN     +  DE
Sbjct: 354 NDESITGADEGRNYRLLTERWDSPIILTTTVQMLNTLFLGKAGSIRRMHNLANSIIIFDE 413

Query: 200 ASGTPDII---NKSILGFFTELNPNRFWIMTSNTRR 232
               P        + L F +E+      + T+   +
Sbjct: 414 VQMIPVKCLRMFNTALNFLSEICGTTIILCTATQPK 449


>gi|28871262|ref|NP_793881.1| ATP-dependent helicase, DinG family [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213971388|ref|ZP_03399502.1| ATP-dependent helicase, DinG family [Pseudomonas syringae pv.
           tomato T1]
 gi|301384365|ref|ZP_07232783.1| ATP-dependent DNA helicase DinG [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062035|ref|ZP_07253576.1| ATP-dependent DNA helicase DinG [Pseudomonas syringae pv. tomato
           K40]
 gi|28854512|gb|AAO57576.1| ATP-dependent helicase, DinG family [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213923831|gb|EEB57412.1| ATP-dependent helicase, DinG family [Pseudomonas syringae pv.
           tomato T1]
 gi|331015713|gb|EGH95769.1| ATP-dependent DNA helicase DinG [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 714

 Score = 38.0 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 28/101 (27%), Gaps = 5/101 (4%)

Query: 51  PHRWQL----EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
           P   Q     E  + +           +      A+ AG G GKT   A   +       
Sbjct: 25  PRYGQRLMIAEVAKVLGDIDTDEEGRRSGDPAVVAVEAGTGTGKTVAYAIAAIPTAKAAG 84

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
              +I  A    Q +  ++ ++   +        F +    
Sbjct: 85  KRLVIATATVALQ-EQIVYKDLPDLMRNSGLNFTFSLAKGR 124


>gi|291556498|emb|CBL33615.1| Phage terminase-like protein, large subunit [Eubacterium siraeum
           V10Sc8a]
          Length = 521

 Score = 38.0 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 42/330 (12%), Positives = 87/330 (26%), Gaps = 57/330 (17%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           KG       +   WQ + +  +      N      T +   I   +  GK+ L A + L 
Sbjct: 26  KGTWAGKPFELIDWQEQIIRDLFGVLKPNGYRQFNTAY---IEIPKKQGKSELAAAVALL 82

Query: 101 LISTRPGMS--IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
           L+         +   A    Q K  ++      +   P        +LS       ++  
Sbjct: 83  LLCGDGEERAEVYGCAADRNQAK-IVFDVAVDMVRFCP--------ALSKRVKILESQKK 133

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTE 217
              +  +S +  ++               H  +   V  DE    P+  +   +L    +
Sbjct: 134 ITYLPTNSSYQVLSA---------DVANKHGFNTHGVIFDELHTQPNRKLFDVMLQGSGD 184

Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPLED-----------WKRYQIDTRTVEGIDSGFH 266
                 + + +             +    D           +          +  D    
Sbjct: 185 ARMQPLYFLITTAGNDTNSICYEVHQKAIDIAEGRKVDPTFYSVIYGAAEDEDWTDPEVW 244

Query: 267 E-------------------GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
           +                       +   + +  R   L Q+ +Q V  ++P    +    
Sbjct: 245 KKANPSLGITVGIDKVQAACESAQQNPGEENAFRQLRLNQWVKQSV-RWMPMEKWDACAF 303

Query: 308 REAIDDLYAPLIM-GCDIAGEGGDKTVVVF 336
             + DDL   +   G D++    D T  V 
Sbjct: 304 PVSEDDLEGRICYGGLDLSST-TDITAFVL 332


>gi|66827345|ref|XP_647027.1| hypothetical protein DDB_G0268868 [Dictyostelium discoideum AX4]
 gi|74858976|sp|Q55EJ3|NAT10_DICDI RecName: Full=N-acetyltransferase 10 homolog
 gi|60475087|gb|EAL73023.1| hypothetical protein DDB_G0268868 [Dictyostelium discoideum AX4]
          Length = 1057

 Score = 38.0 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 45/125 (36%), Gaps = 10/125 (8%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             ++AGRG GK+     + +         +I   + +   L NTL+  V K    + +  
Sbjct: 277 VTLTAGRGRGKSAAL-GLAISAAVAFGYSNIFVSSPTPENL-NTLFQFVFKGFDSMEYVE 334

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             + + +      ++  ++  ++    +      +T    +P  +          V  DE
Sbjct: 335 HVDYELVKSTNPEFHDAIIRVNIFRSHR------QTIQYIQPQDYQKLG--QAELVVIDE 386

Query: 200 ASGTP 204
           A+  P
Sbjct: 387 AAAIP 391


>gi|296416165|ref|XP_002837751.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633634|emb|CAZ81942.1| unnamed protein product [Tuber melanosporum]
          Length = 1788

 Score = 38.0 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/246 (9%), Positives = 64/246 (26%), Gaps = 34/246 (13%)

Query: 7   TDQKLEQELHEMLMHAECV--------LSFKNFVMRFFPWGIKGKPLEH----FSQPHRW 54
                 + L   +   +C          S +  ++   PW  +    +       +P  W
Sbjct: 747 ASLPDRKILFTKVWDGKCEGFDVKLGMTSEEFQLLHCGPWMDRNMDSQSDPRVPFKPDGW 806

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q + ++ +D                  + A    GKT +  + M  ++       ++ +A
Sbjct: 807 QRKVLDELDQDNS------------LFVVAPTSAGKTFIAFYAMEKVLKESDEGVLVYVA 854

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            ++  +       +S++     +         +       A   +  + +      +   
Sbjct: 855 PTKALVNQIAAEVISRYKKNYRYAGKTVWAIHTRDYRMNNANECQILITVPDILQIM--- 911

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM---TSNTR 231
             S     ++          +  DE     +  +  +      L P     +     N  
Sbjct: 912 LMSPSNAKSWTPRVKR----IIFDEVHSIGNAEDGLVWEQLLLLAPCPIIALSATVGNPE 967

Query: 232 RLNGWF 237
               W 
Sbjct: 968 EFGSWL 973


>gi|147921747|ref|YP_684431.1| putative type III restriction-modification system, restriction
           subunit [uncultured methanogenic archaeon RC-I]
 gi|110619827|emb|CAJ35105.1| putative type III restriction-modification system, restriction
           subunit [uncultured methanogenic archaeon RC-I]
          Length = 935

 Score = 38.0 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 51/166 (30%), Gaps = 18/166 (10%)

Query: 54  WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST--------R 105
           W  E  +A  V     +        +       G GKT + A ++ W +          R
Sbjct: 122 WLTEAPDADKVGIIDQIQGDGGPFRRLCSKMATGSGKTIVMAMLIAWQVLNKVTYPQDSR 181

Query: 106 PGMSIICIANSETQLKNTLWAEV-------SKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
              +I  +A     +K+ L   +           +++P     +++   +    W A   
Sbjct: 182 YSKNIFVVAP-GLTVKSRLGVLIPSSEGNYYDEFNIVPIADREKLRQGKVMIRNWQALAW 240

Query: 159 EQSMGIDSKHYTITCRTYSEE--RPDTFVGPHNTHGMAVFNDEASG 202
           E +  +  K         S+E    +          + V NDEA  
Sbjct: 241 ESAERLQKKKSVDKRGPKSDEAYVREVLEDMAGASNIVVINDEAHH 286


>gi|126463950|ref|YP_001045063.1| type III restriction enzyme, res subunit [Rhodobacter sphaeroides
           ATCC 17029]
 gi|126105761|gb|ABN78291.1| type III restriction enzyme, res subunit [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 928

 Score = 38.0 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 41/194 (21%), Gaps = 36/194 (18%)

Query: 42  GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101
            +P     +PH  Q                          + A  G+GKT L A+     
Sbjct: 221 DEPQAPPPEPHTIQR------AALAALTATRRAGHRTGLVVLA-TGLGKTWLAAFDSRHF 273

Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
                   ++ +A+ E  L   +                    S                
Sbjct: 274 A------RVLFVAHREEILTQAM--------------------SSFRRIRPEARFGRYDG 307

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221
              D     +     +  R +            +  DE             G      P 
Sbjct: 308 TEKDDGAEILFASIQTLGRANHLRRFAPDAFDYIVVDEFHHASAGSY---RGLLDHFTPR 364

Query: 222 RFWIMTSNTRRLNG 235
               +T+   R +G
Sbjct: 365 FLLGLTATPDRSDG 378


>gi|67474889|ref|XP_653178.1| chromodomain-helicase-DNA-binding protein [Entamoeba histolytica
           HM-1:IMSS]
 gi|56470108|gb|EAL47792.1| chromodomain-helicase-DNA-binding protein, putative [Entamoeba
           histolytica HM-1:IMSS]
          Length = 1641

 Score = 38.0 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 55/194 (28%), Gaps = 12/194 (6%)

Query: 38  WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTT-LNAW 96
           W ++  P  H +    +Q+E +  +  +                     G+GKT  + A+
Sbjct: 636 WQVQEHPYRHDNTLRSYQMEGLNWLVFNWCRGKGCILADEM--------GLGKTVQVVAF 687

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
                   +     + +    T        E+++W  M    +    ++  L     +  
Sbjct: 688 FEHLRSFQKLPGPFLVVTPLSTL--EHWRREINEWTDMNVVVYLGTKENRQLIQHYEWFY 745

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT 216
           L +    I  +       T  E     +      H      DEA    +     +    T
Sbjct: 746 LNKDEKEISKQIKFHALITTYEMIMSDYEILSQIHWQVTVVDEAQRLKNKS-SKLNKTLT 804

Query: 217 ELNPNRFWIMTSNT 230
           E+      ++T   
Sbjct: 805 EIPSYHKILLTGTP 818


>gi|300024489|ref|YP_003757100.1| terminase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526310|gb|ADJ24779.1| Terminase [Hyphomicrobium denitrificans ATCC 51888]
          Length = 570

 Score = 38.0 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 46/179 (25%), Gaps = 27/179 (15%)

Query: 52  HRWQLE-FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP--GM 108
             WQ +  +        ++         +  I   R  GKT L A +    +      G 
Sbjct: 78  EPWQRDWIVRQAFGWMRADGTR---LYRRIIIWVPRKNGKTELIAGVSHLCLLGDGVIGA 134

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168
               IA+S  Q                         + +     +  EL E     +   
Sbjct: 135 ECYAIASSGDQSSIVF--------------------NAAKDMVDYSDELAEHYEVFEESL 174

Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIM 226
           Y    R   +       G H    + +  DEA     D +   +       +    WI+
Sbjct: 175 YLRDTRALFKALTGKARGKHGLGPVYLIGDEAHEWADDKLYTYVRNGMASASEPMEWII 233


>gi|16804339|ref|NP_465824.1| putative terminase large subunit from bacteriophage A118 [Listeria
           monocytogenes EGD-e]
 gi|16411770|emb|CAD00378.1| putative terminase large subunit from Bacteriophage A118 [Listeria
           monocytogenes EGD-e]
          Length = 443

 Score = 38.0 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 63/226 (27%), Gaps = 20/226 (8%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
                GR   K+++ +  ++      P  +++C+      L  +++ ++   L  +    
Sbjct: 36  IIAKGGRSSMKSSVISLKLVEKKMANPQSNMVCLRKVANTLYKSVYQQIKWALYEMGVAD 95

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND- 198
            F+     +             +  +              +  +   P        F + 
Sbjct: 96  QFKFGKSPMEI-----------IHKEWGTGFYFSGCDDPAKLKSMKIPVGYVSDLWFEEL 144

Query: 199 -EASGTPDI---INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL--EDWKRYQ 252
            E SG  DI    +  I     +      ++  +  R    W  +  +     +D+  + 
Sbjct: 145 AEFSGVTDIDVVEDTFIREDLPDGQEVTIYMSFNPPRNPYEWVNEYVDSKRSDDDYLIHH 204

Query: 253 IDTRT--VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
                     +     + I      D D  R   LG+      N +
Sbjct: 205 TTYLDDEKGFLSKQIIKKIEKYKKNDLDYYRWMYLGEVIGLGDNVY 250


>gi|254234181|ref|ZP_04927504.1| hypothetical protein PACG_00015 [Pseudomonas aeruginosa C3719]
 gi|126166112|gb|EAZ51623.1| hypothetical protein PACG_00015 [Pseudomonas aeruginosa C3719]
          Length = 714

 Score = 38.0 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/185 (11%), Positives = 48/185 (25%), Gaps = 19/185 (10%)

Query: 51  PHRWQL----EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
           P   Q     E  +A+         +        A+ AG G GKT   +   +   +   
Sbjct: 25  PRYGQRLMIAEVAKALGAIKEDEEGHREGEPAVVAVEAGTGTGKTVAYSLAAI-ACAKAS 83

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE----------MQSLSLHPSGWYAE 156
           G  ++    +    +  +  ++   L        F           +  L +      A+
Sbjct: 84  GKRLVIATATVALQEQIVHKDLPDLLRNSGLAFSFALAKGRGRYLCLSKLDVLLQEGQAQ 143

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT 216
                +  D         T S+                 ++ +    P+ I+ +     T
Sbjct: 144 SATAQLFADDGFNIDVDETSSKLFNQMIERLAGNR----WDGDRDSWPEAIDDAHWAQLT 199

Query: 217 ELNPN 221
             +  
Sbjct: 200 TDHSQ 204


>gi|71275268|ref|ZP_00651555.1| conserved hypothetical protein [Xylella fastidiosa Dixon]
 gi|71900146|ref|ZP_00682287.1| conserved hypothetical protein [Xylella fastidiosa Ann-1]
 gi|71164077|gb|EAO13792.1| conserved hypothetical protein [Xylella fastidiosa Dixon]
 gi|71730095|gb|EAO32185.1| conserved hypothetical protein [Xylella fastidiosa Ann-1]
          Length = 723

 Score = 38.0 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 37/154 (24%), Gaps = 21/154 (13%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL--SMLPHRHWFEMQ 144
           G GKT + A    +L +  P   I    ++   LK      ++ +          W +++
Sbjct: 217 GSGKTIVLALKAAYLHTQYPDWRIAVTFHT-RSLKAQFQRLITNFCIEQSGEEPDWSKIR 275

Query: 145 SLSLHPSGWYAELLEQSMGI--DSKHYTITCRTYSEERPDTFVGPHNT------------ 190
            ++   +   A            +       R  S          +              
Sbjct: 276 VINAWGAPGEAARDGLYYEYCCATGATFFDFRNASSTFGGNEKAFNGACRNALEDAADAA 335

Query: 191 ----HGMAVFNDEASGTPDIINKSILGFFTELNP 220
                   +  DEA   P    K      T    
Sbjct: 336 DAAGLYDVILLDEAQDLPPSFLKLCYAMLTPEKR 369


>gi|107100489|ref|ZP_01364407.1| hypothetical protein PaerPA_01001514 [Pseudomonas aeruginosa PACS2]
 gi|116048973|ref|YP_792225.1| ATP-dependent DNA helicase DinG [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218892993|ref|YP_002441862.1| ATP-dependent DNA helicase DinG [Pseudomonas aeruginosa LESB58]
 gi|254239402|ref|ZP_04932724.1| hypothetical protein PA2G_00015 [Pseudomonas aeruginosa 2192]
 gi|296390593|ref|ZP_06880068.1| ATP-dependent DNA helicase DinG [Pseudomonas aeruginosa PAb1]
 gi|313105996|ref|ZP_07792257.1| Putative DNA helicase [Pseudomonas aeruginosa 39016]
 gi|115584194|gb|ABJ10209.1| Putative DNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126192780|gb|EAZ56843.1| hypothetical protein PA2G_00015 [Pseudomonas aeruginosa 2192]
 gi|218773221|emb|CAW29033.1| Putative DNA helicase [Pseudomonas aeruginosa LESB58]
 gi|310878759|gb|EFQ37353.1| Putative DNA helicase [Pseudomonas aeruginosa 39016]
          Length = 714

 Score = 38.0 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/185 (11%), Positives = 48/185 (25%), Gaps = 19/185 (10%)

Query: 51  PHRWQL----EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
           P   Q     E  +A+         +        A+ AG G GKT   +   +   +   
Sbjct: 25  PRYGQRLMIAEVAKALGAIKEDEEGHREGEPAVVAVEAGTGTGKTVAYSLAAI-ACAKAS 83

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE----------MQSLSLHPSGWYAE 156
           G  ++    +    +  +  ++   L        F           +  L +      A+
Sbjct: 84  GKRLVIATATVALQEQIVHKDLPDLLRNSGLAFSFALAKGRGRYLCLSKLDVLLQEGQAQ 143

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT 216
                +  D         T S+                 ++ +    P+ I+ +     T
Sbjct: 144 SATAQLFADDGFNIDVDETSSKLFNQMIERLAGNR----WDGDRDSWPEAIDDAHWAQLT 199

Query: 217 ELNPN 221
             +  
Sbjct: 200 TDHSQ 204


>gi|330795563|ref|XP_003285842.1| hypothetical protein DICPUDRAFT_149730 [Dictyostelium purpureum]
 gi|325084221|gb|EGC37654.1| hypothetical protein DICPUDRAFT_149730 [Dictyostelium purpureum]
          Length = 1325

 Score = 38.0 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 48/135 (35%), Gaps = 10/135 (7%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             ++AGRG GK+     + +         +I   + +   L   L+  + K    + +  
Sbjct: 277 VTLTAGRGRGKSAAL-GLAISAAVAFGYSNIFVSSPTPENLHT-LFQFIFKGFDSMEYVE 334

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             + + +      ++  ++  ++    +      +T    +P  +          V  DE
Sbjct: 335 HVDYELVKSTNPEFHDAIIRVNIFRTHR------QTIQYIQPQDYQKLG--QAELVVIDE 386

Query: 200 ASGTPDIINKSILGF 214
           A+  P    K++LG 
Sbjct: 387 AAAIPLPYVKNLLGP 401


>gi|262280780|ref|ZP_06058563.1| exonuclease V alpha subunit [Acinetobacter calcoaceticus RUH2202]
 gi|262257680|gb|EEY76415.1| exonuclease V alpha subunit [Acinetobacter calcoaceticus RUH2202]
          Length = 583

 Score = 38.0 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 33/124 (26%), Gaps = 16/124 (12%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
            I+ G G GKT   A ++  L    P + +   A +    +                   
Sbjct: 143 IITGGPGTGKTYTLARIIAVLSQAIPHIRVAMAAPTGKAAQRM----------------Q 186

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
             +Q+    P    + L+ + +                 +   F          +  DEA
Sbjct: 187 EALQNSFNDPKLLESGLMSEELRNQGTQTIHRLLGMGHSQTPRFNQKQPLPYDVIVVDEA 246

Query: 201 SGTP 204
           S   
Sbjct: 247 SMLD 250


>gi|195565815|ref|XP_002106494.1| GD16096 [Drosophila simulans]
 gi|194203870|gb|EDX17446.1| GD16096 [Drosophila simulans]
          Length = 960

 Score = 38.0 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 56/207 (27%), Gaps = 22/207 (10%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            +++A RG GK+     + +        +++   +     L   L+  V K    L ++ 
Sbjct: 275 MSLTAARGRGKSAAL-GLSIAAAVAFGYVNVYVTSPHPENLIT-LFEFVLKGFDALEYQE 332

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +   +      +   ++  ++   S+              +            +  DE
Sbjct: 333 HADYTIIRSTNVDYKKAIIRINITRSSRQTIQYIAPSDTHLLNAAD--------LLLIDE 384

Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259
           A+  P       L    ++       M S         Y+     L      Q+      
Sbjct: 385 AAAIP-------LPLVKKMIGPYLVFMASTING-----YEGTGRSLSLKLISQLQKDNNA 432

Query: 260 GIDSGFHEGIISRYGLDSDVARIEILG 286
                  E I  +   D     I +L 
Sbjct: 433 RPPLKLEESIRYQENDDIKKWLINLLC 459


>gi|50292411|ref|XP_448638.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527950|emb|CAG61601.1| unnamed protein product [Candida glabrata]
          Length = 1053

 Score = 38.0 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 38/125 (30%), Gaps = 10/125 (8%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            A++AGRG GK+      +          +I   + S   LK  L+  + K    L ++ 
Sbjct: 279 VALTAGRGRGKSAALGIAIA-AAVAHGYSNIFVTSPSPENLKT-LFEFIFKGFDALGYQE 336

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +   +      +   ++   +  D +                           V  DE
Sbjct: 337 HADYDIIQSTNPDFNKAIVRVDIKRDHRQTIQYILPQDSYVLGQAE--------LVVIDE 388

Query: 200 ASGTP 204
           A+  P
Sbjct: 389 AAAIP 393


>gi|327296996|ref|XP_003233192.1| nucleolar ATPase Kre33 [Trichophyton rubrum CBS 118892]
 gi|326464498|gb|EGD89951.1| nucleolar ATPase Kre33 [Trichophyton rubrum CBS 118892]
          Length = 1073

 Score = 38.0 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 41/150 (27%), Gaps = 15/150 (10%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q + +             S        ++A RG GK+     + +         +I   +
Sbjct: 261 QAKALLTFVDAIAEKTLRST-----VTLTAARGRGKSAAL-GVAISAAIAHGYSNIFITS 314

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            S   LK  L+  V K    L +    +   L      +   ++  ++    +      +
Sbjct: 315 PSPENLKT-LFEFVFKGFDELGYLDHVDYTILQSTNPDFNKAIVRVNVHRQHRQTIQYIQ 373

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                               +  DEA+  P
Sbjct: 374 PQDAFALGQAE--------LLVIDEAAAIP 395


>gi|320354827|ref|YP_004196166.1| exodeoxyribonuclease V subunit alpha [Desulfobulbus propionicus DSM
           2032]
 gi|320123329|gb|ADW18875.1| exodeoxyribonuclease V, alpha subunit [Desulfobulbus propionicus
           DSM 2032]
          Length = 620

 Score = 38.0 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 32/126 (25%), Gaps = 21/126 (16%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGM-SIICIANSETQLKNTLWAEVSKWLSMLPHR 138
             IS G G GKT   A M+  LI+  P    I   A +       L   + +    LP  
Sbjct: 172 VIISGGPGTGKTYTVARMLALLIALTPTKPRIALAAPTGK-AALRLRESIRRAKDALPP- 229

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               + +  +         L                                H   +  D
Sbjct: 230 ----LLATPIPEQAQTLHRLLGVHHDRPGFRHHGANPL--------------HLDLLILD 271

Query: 199 EASGTP 204
           EAS   
Sbjct: 272 EASMID 277


>gi|315044239|ref|XP_003171495.1| N-acetyltransferase 10 [Arthroderma gypseum CBS 118893]
 gi|311343838|gb|EFR03041.1| N-acetyltransferase 10 [Arthroderma gypseum CBS 118893]
          Length = 1073

 Score = 38.0 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 41/150 (27%), Gaps = 15/150 (10%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q + +             S        ++A RG GK+     + +         +I   +
Sbjct: 261 QAKALLTFVDAIAEKTLRST-----VTLTAARGRGKSAAL-GVAISAAIAHGYSNIFITS 314

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            S   LK  L+  V K    L +    +   L      +   ++  ++    +      +
Sbjct: 315 PSPENLKT-LFEFVFKGFDELGYLDHVDYTILQSTNPDFNKAIVRVNVHRQHRQTIQYIQ 373

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                               +  DEA+  P
Sbjct: 374 PQDAFALGQAE--------LLVIDEAAAIP 395


>gi|302661292|ref|XP_003022315.1| hypothetical protein TRV_03526 [Trichophyton verrucosum HKI 0517]
 gi|291186255|gb|EFE41697.1| hypothetical protein TRV_03526 [Trichophyton verrucosum HKI 0517]
          Length = 1073

 Score = 38.0 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 41/150 (27%), Gaps = 15/150 (10%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q + +             S        ++A RG GK+     + +         +I   +
Sbjct: 261 QAKALLTFVDAIAEKTLRST-----VTLTAARGRGKSAAL-GVAISAAIAHGYSNIFITS 314

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            S   LK  L+  V K    L +    +   L      +   ++  ++    +      +
Sbjct: 315 PSPENLKT-LFEFVFKGFDELGYLDHVDYTILQSTNPDFNKAIVRVNVHRQHRQTIQYIQ 373

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                               +  DEA+  P
Sbjct: 374 PQDAFALGQAE--------LLVIDEAAAIP 395


>gi|302511375|ref|XP_003017639.1| hypothetical protein ARB_04521 [Arthroderma benhamiae CBS 112371]
 gi|291181210|gb|EFE36994.1| hypothetical protein ARB_04521 [Arthroderma benhamiae CBS 112371]
          Length = 1073

 Score = 38.0 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 41/150 (27%), Gaps = 15/150 (10%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q + +             S        ++A RG GK+     + +         +I   +
Sbjct: 261 QAKALLTFVDAIAEKTLRST-----VTLTAARGRGKSAAL-GVAISAAIAHGYSNIFITS 314

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            S   LK  L+  V K    L +    +   L      +   ++  ++    +      +
Sbjct: 315 PSPENLKT-LFEFVFKGFDELGYLDHVDYTILQSTNPDFNKAIVRVNVHRQHRQTIQYIQ 373

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                               +  DEA+  P
Sbjct: 374 PQDAFALGQAE--------LLVIDEAAAIP 395


>gi|198417117|ref|XP_002122030.1| PREDICTED: hypothetical protein [Ciona intestinalis]
          Length = 1156

 Score = 38.0 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 32/151 (21%), Gaps = 28/151 (18%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL--------------------WA 126
           G GK+ L    +       P   I  I   +    +                      W 
Sbjct: 343 GSGKSQLVCAYVKHFNIQHPSSIIWSIECKDHSAMDASLVSLRKAVFSSQLLSEGQHDWR 402

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
           EV   L          ++ L      W   L      + +   +    T           
Sbjct: 403 EVFVQLKKTGVHILLLLEDLQKGMDDWSENLQTVVDSVLNYDKSYIIGTSRNALTIRDFD 462

Query: 187 PH-------NTHGMAVFND-EASGTPDIINK 209
            H       +     +  D EAS   D    
Sbjct: 463 LHKVNGFTLDEAVNFLMQDREASEDEDEPWA 493


>gi|148828339|ref|YP_001293092.1| DNA-dependent helicase II [Haemophilus influenzae PittGG]
 gi|148719581|gb|ABR00709.1| DNA helicase II [Haemophilus influenzae PittGG]
          Length = 726

 Score = 38.0 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 80/302 (26%), Gaps = 29/302 (9%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIA 114
           E ++ ++      V           + AG G GKT +    + WLI+       SI+ + 
Sbjct: 5   ELLDGLNDKQREAVAAPLGNH---LVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            +            S       H+            +          +G+      +   
Sbjct: 62  FTNKAAAEMRHRIQSTLAKHAQHQLVGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSE 121

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
                     +  HN        DE +  P       +    +               + 
Sbjct: 122 -DQLRLIKRLLKLHN-------FDEKAF-PPKQACWYINNKKDEGLR--------PNDIE 164

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294
            +        ++ ++ YQ        +D       +        +       +F    V+
Sbjct: 165 DFNDRQEREWIKIYQIYQDTCDRAGLVDFAELLIRVYELFEKKPLILQRYQQRFQHILVD 224

Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354
            F   N I+     + +      +++  D      D++ +   RG  IE+I  +      
Sbjct: 225 EFQDTNKIQYK-WIKILAGKTGQVMIVGD-----DDQS-IYGWRGAQIENIQKFLKDFKA 277

Query: 355 ET 356
           ET
Sbjct: 278 ET 279


>gi|332969134|gb|EGK08167.1| ATP-dependent helicase [Desmospora sp. 8437]
          Length = 947

 Score = 38.0 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 33/262 (12%), Positives = 74/262 (28%), Gaps = 18/262 (6%)

Query: 43  KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102
            P+       R Q    ++   +  +          +  I+ G G+GKT     ++  LI
Sbjct: 86  TPILGSDVTTRGQAAMDDSDYQYVPA-QVALERLRPRILIADGVGLGKTIEAGVLLSELI 144

Query: 103 STRPGMSIICIANSE--TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
               G  ++ +A      QL+  +W   S  L  L       ++         +    + 
Sbjct: 145 RRGRGRRVLVVAPRSMLEQLQKEMWTRFSIPLMRLDSIGIARIRREIPQNKNPFHYYDKV 204

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP-DIINKSILGFFTELN 219
            + ID+       R              N    AV+ DE+        +++ L       
Sbjct: 205 IISIDTLKNDDRYR----------HFLENCTWDAVWIDESHNVANQNTDRNRLATLLAHR 254

Query: 220 PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279
            +   + ++         +      L+       +  T E +         +     +  
Sbjct: 255 THSLILTSATPHNGKPESFATLLRMLDPTSVANPEKITPEEVQHLVVRRFKNDVLPQTPG 314

Query: 280 AR----IEILGQFPQQEVNNFI 297
            +    +++      +E    I
Sbjct: 315 FKEVHDVQVECPTTPEEDQLLI 336


>gi|301169926|emb|CBW29530.1| DNA-dependent ATPase I and helicase II [Haemophilus influenzae
           10810]
          Length = 727

 Score = 38.0 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 80/302 (26%), Gaps = 29/302 (9%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIA 114
           E ++ ++      V           + AG G GKT +    + WLI+       SI+ + 
Sbjct: 6   ELLDGLNDKQREAVAAPLGNH---LVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 62

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            +            S       H+            +          +G+      +   
Sbjct: 63  FTNKAAAEMRHRIQSTLAKHAQHQLVGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSE 122

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
                     +  HN        DE +  P       +    +               + 
Sbjct: 123 -DQLRLIKRLLKLHN-------FDEKAF-PPKQACWYINNKKDEGLR--------PNDIE 165

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294
            +        ++ ++ YQ        +D       +        +       +F    V+
Sbjct: 166 DFNDRQEREWIKIYQIYQDTCDRAGLVDFAELLIRVYELFEKKPLILQRYQQRFQHILVD 225

Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354
            F   N I+     + +      +++  D      D++ +   RG  IE+I  +      
Sbjct: 226 EFQDTNKIQYK-WIKILAGKTGQVMIVGD-----DDQS-IYGWRGAQIENIQKFLKDFKA 278

Query: 355 ET 356
           ET
Sbjct: 279 ET 280


>gi|164661731|ref|XP_001731988.1| hypothetical protein MGL_1256 [Malassezia globosa CBS 7966]
 gi|159105889|gb|EDP44774.1| hypothetical protein MGL_1256 [Malassezia globosa CBS 7966]
          Length = 1210

 Score = 38.0 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/118 (11%), Positives = 31/118 (26%), Gaps = 4/118 (3%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GK+T  A ++  L     G  ++  +++ + +   +   +   + +L       +   
Sbjct: 776 GTGKSTTIAVLVRILADM--GQCVLLCSHTHSAVDTIVSKLLD--IPVLRLGPLSRIHPR 831

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
               +       + S               +                    DEAS   
Sbjct: 832 VHACALATKLGPQASAEALVDLVQDAQIVAATCLATNDAALARRTFDVCIMDEASQIT 889


>gi|119503223|ref|ZP_01625307.1| arginine/ornithine transport system ATPase [marine gamma
           proteobacterium HTCC2080]
 gi|119460869|gb|EAW41960.1| arginine/ornithine transport system ATPase [marine gamma
           proteobacterium HTCC2080]
          Length = 326

 Score = 38.0 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 48/144 (33%), Gaps = 6/144 (4%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q E       H  +++        +  I+   G+GK+T      L L+     ++++ + 
Sbjct: 31  QREDDRESSQHLLNSLLPHTGKSIRIGITGVPGVGKSTFIEAFGLHLVRQGHRVAVLAVD 90

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            S      ++  + ++  ++         ++  + PS   + L   ++            
Sbjct: 91  PSSPLAGGSILGDKTRMEALS------REENAYIRPSPAGSALGGVALKTRESMLLCEAA 144

Query: 175 TYSEERPDTFVGPHNTHGMAVFND 198
            Y     +T     + H +A   D
Sbjct: 145 GYDVIIVETVGVGQSEHQVAGMVD 168


>gi|332710560|ref|ZP_08430505.1| Superfamily I DNA/RNA helicase [Lyngbya majuscula 3L]
 gi|332350615|gb|EGJ30210.1| Superfamily I DNA/RNA helicase [Lyngbya majuscula 3L]
          Length = 727

 Score = 38.0 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/161 (13%), Positives = 38/161 (23%), Gaps = 17/161 (10%)

Query: 53  RWQLE-FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
            WQ E   + +          +             G GKT L       +    P  +I 
Sbjct: 235 DWQQEHIGKEIPPGFQRLRGIA-------------GSGKTVLLCQKAAHMHLKHPDWTIG 281

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +      L + +   V +WL    +         +      +A   +   G+ S    +
Sbjct: 282 LVF-FSRTLYDLMIGLVDRWLRRFSNGDIQYDHKTNQKLRVLHAWGAKDQPGLYSTICQL 340

Query: 172 T-CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211
              R  S               +     E          +I
Sbjct: 341 NGARPKSAGDTRERQPNRGLAELCKRLSEEINIKP-CFDAI 380


>gi|212542437|ref|XP_002151373.1| DNA replication helicase Dna2, putative [Penicillium marneffei ATCC
            18224]
 gi|210066280|gb|EEA20373.1| DNA replication helicase Dna2, putative [Penicillium marneffei ATCC
            18224]
          Length = 1670

 Score = 38.0 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 36/121 (29%), Gaps = 9/121 (7%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS- 145
            G GKTT  A ++        G S++  + + T + N L    +  +  L      ++   
Sbjct: 1143 GTGKTTTIAHII--RALVSQGKSVLLTSYTHTAVDNILLKIKNDNIRTLRLGAVAKVHPE 1200

Query: 146  --LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
                +  +      +E+      +   +         P      +         DEAS  
Sbjct: 1201 VQQFVDLAAIPKNTIEELQESYQESKVVATTCLGINHP----IFNERIFDYCIVDEASQI 1256

Query: 204  P 204
             
Sbjct: 1257 T 1257


>gi|153938250|ref|YP_001389464.1| hypothetical protein CLI_0156 [Clostridium botulinum F str.
           Langeland]
 gi|152934146|gb|ABS39644.1| conserved hypothetical protein [Clostridium botulinum F str.
           Langeland]
          Length = 1350

 Score = 38.0 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 7/102 (6%), Positives = 32/102 (31%), Gaps = 6/102 (5%)

Query: 40  IKGKPLEHFSQPHRWQL---EFMEAV-DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95
            + +  + +    +W+    + +  +       ++           +    G GK+   A
Sbjct: 239 EEKEIEDDYIHKDQWKECKEDILFPLDANEEQMSIVKKICENEAILVQGPPGTGKSHTIA 298

Query: 96  WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
            ++   ++   G  ++  + +   L+  +         +  +
Sbjct: 299 NLICHFLAH--GKKVLITSETSRALRVLINKIPEDIKPLCVN 338


>gi|91783626|ref|YP_558832.1| putative ATP-dependent RNA helicase, rhlE [Burkholderia xenovorans
           LB400]
 gi|91687580|gb|ABE30780.1| Putative ATP-dependent RNA helicase, rhlE [Burkholderia xenovorans
           LB400]
          Length = 523

 Score = 38.0 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 53/228 (23%), Gaps = 30/228 (13%)

Query: 81  AISAGR--------GIGKTTLNAWMMLWLISTRPGM------SIICIANSETQLKNTLWA 126
           A+  GR        G GKT   A  +L  +             ++ +  +    +  L +
Sbjct: 76  AVLGGRDVMAAAQTGTGKTAGFALPLLQRLVQHGPAVSSNRARVLVLVPTRELAEQVLQS 135

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
            +           + +   L    +     +  Q M +      +          +    
Sbjct: 136 FI----------DYGKGLDLRFLAAYGGVSINPQMMKLRKGVDVLVATPGRLLDLNRQNA 185

Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246
                   +  DEA    D+     L       P R   +  +    +        I  +
Sbjct: 186 VQLDQVQTLVLDEADRMLDLGFARELNAVFAALPVRRQTLLFSATFTDDIRAMAAGILRD 245

Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGL--DSDVARIEILGQFPQQE 292
                   + +     +      +         D+    + G   +  
Sbjct: 246 PVNI----SVSPPNATASKIRQWVVTVDKKNKPDLFMHLVAGNNWRHA 289


>gi|310778840|ref|YP_003967173.1| terminase GpA [Ilyobacter polytropus DSM 2926]
 gi|309748163|gb|ADO82825.1| terminase GpA [Ilyobacter polytropus DSM 2926]
          Length = 603

 Score = 38.0 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 22/184 (11%), Positives = 44/184 (23%), Gaps = 28/184 (15%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            +Q + ME +            P +F+  +     +GKT +    +   +   P   ++ 
Sbjct: 51  PYQRKMMECITD----------PLVFEITVMTSSQVGKTEILLNAIGRYMHLDP-CPMMV 99

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           +  +    K      V+  +   P        S S                +    +   
Sbjct: 100 VQPTVEMAKTFSKDRVAPMVRDTPSLKKLVKDSRSR------DSGNTVMQKMFPGGHITF 153

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG-FFTELNPNRFW----IMT 227
                    ++     +     +  DE    P             E     FW    I  
Sbjct: 154 V------GANSPSALASRPIRIILADEVDRFPKSAGDEGDPLTLAEKRTTTFWNRKHIRV 207

Query: 228 SNTR 231
           S   
Sbjct: 208 STPT 211


>gi|257058465|ref|YP_003136353.1| signal transduction protein with Nacht domain [Cyanothece sp. PCC
           8802]
 gi|256588631|gb|ACU99517.1| putative signal transduction protein with Nacht domain [Cyanothece
           sp. PCC 8802]
          Length = 1235

 Score = 38.0 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 5/96 (5%)

Query: 69  NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL--KNTLWA 126
           N  N      + A+    G GKT     +  W++S    + I    N   Q   ++ ++ 
Sbjct: 104 NNRNHKEKKPRIALLGPAGTGKTLTLQKIAHWILSQTEDLPIWLSPNQWKQAGVEDYIY- 162

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
              +WL+     +      L +    + A L    +
Sbjct: 163 --HQWLAQAATNYHSGKYPLKVWQESFEALLNRGQV 196


>gi|218245429|ref|YP_002370800.1| putative signal transduction protein with Nacht domain [Cyanothece
           sp. PCC 8801]
 gi|218165907|gb|ACK64644.1| putative signal transduction protein with Nacht domain [Cyanothece
           sp. PCC 8801]
          Length = 1235

 Score = 38.0 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 5/96 (5%)

Query: 69  NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL--KNTLWA 126
           N  N      + A+    G GKT     +  W++S    + I    N   Q   ++ ++ 
Sbjct: 104 NNRNHKEKKPRIALLGPAGTGKTLTLQKIAHWILSQTEDLPIWLSPNQWKQAGVEDYIY- 162

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162
              +WL+     +      L +    + A L    +
Sbjct: 163 --HQWLAQAATNYHSGKYPLKVWQESFEALLNRGQV 196


>gi|326481174|gb|EGE05184.1| nucleolar ATPase Kre33 [Trichophyton equinum CBS 127.97]
          Length = 1028

 Score = 38.0 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 41/150 (27%), Gaps = 15/150 (10%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q + +             S        ++A RG GK+     + +         +I   +
Sbjct: 261 QAKALLTFVDVIAEKTLRST-----VTLTAARGRGKSAAL-GVAISAAIAHGYSNIFITS 314

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            S   LK  L+  V K    L +    +   L      +   ++  ++    +      +
Sbjct: 315 PSPENLKT-LFEFVFKGFDELGYLDHVDYTILQSTNPDFNKAIVRVNVHRQHRQTIQYIQ 373

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                               +  DEA+  P
Sbjct: 374 PQDAFALGQAE--------LLVIDEAAAIP 395


>gi|326476357|gb|EGE00367.1| nucleolar ATPase Kre33 [Trichophyton tonsurans CBS 112818]
          Length = 1045

 Score = 38.0 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 41/150 (27%), Gaps = 15/150 (10%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q + +             S        ++A RG GK+     + +         +I   +
Sbjct: 233 QAKALLTFVDVIAEKTLRST-----VTLTAARGRGKSAAL-GVAISAAIAHGYSNIFITS 286

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            S   LK  L+  V K    L +    +   L      +   ++  ++    +      +
Sbjct: 287 PSPENLKT-LFEFVFKGFDELGYLDHVDYTILQSTNPDFNKAIVRVNVHRQHRQTIQYIQ 345

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                               +  DEA+  P
Sbjct: 346 PQDAFALGQAE--------LLVIDEAAAIP 367


>gi|316977464|gb|EFV60560.1| DEAD-box ATP-dependent RNA helicase 1 [Trichinella spiralis]
          Length = 570

 Score = 38.0 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/171 (11%), Positives = 48/171 (28%), Gaps = 6/171 (3%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSI--ICIANSETQLKNT--LWAEVSKWLSML 135
             IS+  G GKT      +++ +  RP   I  + I  +   +     ++++ +K+  + 
Sbjct: 92  ICISSPTGSGKTLCYVLPIIYALRDRPMPRIRALVIVPTAELVDQVYQVFSQFAKYAKLK 151

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
                 E      +   +           D    T          P      +  +   +
Sbjct: 152 VVSISGEKSLKRDYNKIYETTPGGLCATCDVLISTPGRLLEHLFGPHR-SSFNLQYLRFL 210

Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246
             DEA         ++L   +    +    +  +    +    D   +   
Sbjct: 211 VFDEADFLLRDDYYALLLKASGYRNSIEETVYCS-NDDSTTCCDAMALDRN 260


>gi|260222887|emb|CBA32903.1| hypothetical protein Csp_B16360 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 705

 Score = 38.0 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 2/70 (2%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCA--ISAGRGIGKTTLNAWMMLWLISTRPGMS 109
              Q +  E V           +P   K    I AG G+GK+   A   + +   R    
Sbjct: 22  RAGQHQMAETVAATLAQADIGEHPNPTKAIAVIQAGTGVGKSAAYASTAIAMALERKTRV 81

Query: 110 IICIANSETQ 119
           II  A    Q
Sbjct: 82  IISTATVALQ 91


>gi|332830085|gb|EGK02713.1| hypothetical protein HMPREF9455_00963 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 1119

 Score = 38.0 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 40/143 (27%), Gaps = 9/143 (6%)

Query: 82  ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141
           I    G GKT++ A  ++         +I+ +A +   +     +    +         +
Sbjct: 703 IVGPPGTGKTSIFARQLIERFYAGENTNILVMAYTNRAVDELCASICQAFGESEDECDRY 762

Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER---------PDTFVGPHNTHG 192
                 L     Y   L Q++   + +     RT    R                   + 
Sbjct: 763 IRIGSELSCGEGYRHRLLQNISYQAGNRKELIRTIDSTRIFVGTLASITGKPELFDLKNF 822

Query: 193 MAVFNDEASGTPDIINKSILGFF 215
                DEAS   +     +L  F
Sbjct: 823 NIAIIDEASQILEPQIIGLLPLF 845


>gi|123441982|ref|YP_001005965.1| terminase, ATPase subunit [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088943|emb|CAL11753.1| probable terminase, ATPase subunit [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 572

 Score = 38.0 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 42/321 (13%), Positives = 79/321 (24%), Gaps = 35/321 (10%)

Query: 39  GIKGKPLEHFSQPHRWQLE--FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96
           G K  P  HFS     QL   F + +  H        +  I    I   R IG T   + 
Sbjct: 100 GRKKLPKNHFSDEQIEQLRVRFYDGLYEHQKRWYKAKSLAITIRNILKSRQIGATWYFSR 159

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
             L       G + I ++ S  Q          +++         E++   +  S     
Sbjct: 160 EALIDALET-GRNQIFLSASRAQAHQ-----FKRFIIKFAAEVGVELKGDPIMLSNGAEL 213

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN-----THGMAVFNDEASGTPDIINK-- 209
               +    ++ YT             F+   +          +     S      ++  
Sbjct: 214 HFLGTSAASAQSYTGNLYFDEYFWTSNFINLRSVAAGMATQTGLIETYFSTISSEEHEAY 273

Query: 210 --SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267
                  F +       +    T +      +        WK+  +  +    +     +
Sbjct: 274 CFWSGELFNDGRKKADRVNIDITHKN---LKNGKICADRQWKQI-VTVKDAAALGFDRID 329

Query: 268 GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE------------AIDDLY 315
                     D      + Q        F     I   +                     
Sbjct: 330 VDDLIAKKSPDEFNNLYMCQPITNGERPFSYSELINCGVDGWNAGVWDDWRPYSPRPLGN 389

Query: 316 APLIMGCDIA--GEGGDKTVV 334
           +P+ +G D    G+GGD   +
Sbjct: 390 SPVWIGYDPNGEGDGGDSAGL 410


>gi|145229155|ref|XP_001388886.1| hypothetical protein ANI_1_586014 [Aspergillus niger CBS 513.88]
 gi|134054986|emb|CAK36994.1| unnamed protein product [Aspergillus niger]
          Length = 1068

 Score = 38.0 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 41/150 (27%), Gaps = 15/150 (10%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q + +             S       A++A RG GK+      +          +I   +
Sbjct: 261 QAKALLTFADAIAEKTLRST-----VALTAARGRGKSAALGVAIA-AAVAHGYSNIFITS 314

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            S   LK  L+  V K    L +    +   L      +   ++  ++    +      +
Sbjct: 315 PSPENLKT-LFEFVFKGFDALGYLDHVDYTILQSTNPDFNKAIVRVNIHRQHRQTIQYIQ 373

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                               +  DEA+  P
Sbjct: 374 PQDAHVLGQAE--------LLVIDEAAAIP 395


>gi|30248838|ref|NP_840908.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas
           europaea ATCC 19718]
 gi|30180433|emb|CAD84745.1| DEAD/DEAH box helicase:HD domain [Nitrosomonas europaea ATCC 19718]
          Length = 680

 Score = 38.0 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 40/145 (27%), Gaps = 7/145 (4%)

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT--LWAEVSKWL 132
           P +F   +    G GKT  +    L          +I +    + L+ T  ++ ++    
Sbjct: 270 PGLFSLTV--PTGGGKTLSSTAFALNHAMHHGKQRVIYVIPYTSILEQTAEIFRKIFGDE 327

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192
           +++ H    +                   +   +  +  +               HN   
Sbjct: 328 NVIEHHSNLDPDKEDSRSRLATENWDAPIIVTTNVQFFESLFAAR---TSRCRKLHNIVN 384

Query: 193 MAVFNDEASGTPDIINKSILGFFTE 217
             V  DEA   P      IL    +
Sbjct: 385 SVVVLDEAQLLPPEFLAPILHVMQD 409


>gi|61098422|ref|NP_001012958.1| N-acetyltransferase 10 [Gallus gallus]
 gi|53133462|emb|CAG32060.1| hypothetical protein RCJMB04_16p3 [Gallus gallus]
          Length = 1019

 Score = 38.0 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 49/152 (32%), Gaps = 19/152 (12%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
           +  L+F+EA+      +           A++A RG GK+     + +         +I  
Sbjct: 262 KAVLKFIEAISEKTLRST---------VALTAARGRGKSAAL-GLAIVGAVAFGYSNIFV 311

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            + S   L   L+  + K    L ++   + + +      +   ++  ++  + +     
Sbjct: 312 TSPSPDNLHT-LFEFIFKGFDALQYQEHLDYEIIQSLNPEFNKAVVRVNVFKEHRQTIQY 370

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                  +              V  DEA+  P
Sbjct: 371 IHPADSVKLGQAE--------LVVIDEAAAIP 394


>gi|257869123|ref|ZP_05648776.1| PhoH family protein [Enterococcus gallinarum EG2]
 gi|257803287|gb|EEV32109.1| PhoH family protein [Enterococcus gallinarum EG2]
          Length = 324

 Score = 38.0 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 49/202 (24%), Gaps = 22/202 (10%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKT L   M +  +       II    +             +    L        + +
Sbjct: 140 GTGKTFLAVVMAIAALKKGQVQKIILTRPA------------VEAGENLGFLPGDLKEKV 187

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
             +    Y  L    +        +  R   E  P  ++         V  DEA    + 
Sbjct: 188 DPYLRPVYDALY--QIFGMDHTNRLMERGVIEIAPLAYMRGRTLEDAFVILDEAQ---NT 242

Query: 207 INKSILGFFTELNPNRFWIMTSNT-----RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI 261
               +  F T L  N   I+  +T      +            LE   +          +
Sbjct: 243 TIAQMKMFLTRLGFNSKMIVNGDTSQIDLPKGTTSGLIHAQRALEAIPKIAFAHFEAGDV 302

Query: 262 DSGFHEGIISRYGLDSDVARIE 283
                   I R   +SD     
Sbjct: 303 VRHPVVADIIRAYEESDSKEQR 324


>gi|85001273|ref|XP_955355.1| regulator of nonsense transcripts-related protein [Theileria
           annulata strain Ankara]
 gi|65303501|emb|CAI75879.1| regulator of nonsense transcripts-related protein, putative
           [Theileria annulata]
          Length = 1189

 Score = 38.0 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 38/137 (27%), Gaps = 14/137 (10%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             I    G GKT +   ++       P + I+ +A+S     N + A   K +  L    
Sbjct: 719 TLIQGPPGTGKTHVACAIIDCWAKLNPNIRILAVADSNIAADNLIDALTKKNIQALRIGQ 778

Query: 140 WFEM--------------QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185
             E                 L L   G Y E     + + S+         +        
Sbjct: 779 SSEYELQEESIKNLDRYQTYLKLKMGGHYKEAKNLKVLLYSEAIKQHNIIIATCVGSGND 838

Query: 186 GPHNTHGMAVFNDEASG 202
              N     V  DE S 
Sbjct: 839 LLSNYQFSHVIIDECSQ 855


>gi|251771227|gb|EES51808.1| putative helicase [Leptospirillum ferrodiazotrophum]
          Length = 1039

 Score = 38.0 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 71/259 (27%), Gaps = 35/259 (13%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P+ +Q E +E +       V        K  + A  G GKT + A     L    P   +
Sbjct: 302 PYPFQEEILEKLA------VEREVHGRTKNLVVAATGTGKTVIAALDFRRLREKMPRARL 355

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
           + +A+    L+ +L                F    L   P G    L      + S+   
Sbjct: 356 LFVAHRREILEQSLLT-----FRRALGDPNFGRILLPDGPPGGSEHLFVSVQLLASRSLL 410

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230
            +      +        H                           + L+P     +T+  
Sbjct: 411 DSLSPDYFDVVVVDEVHHGEAPTY-----------------RRLLSRLSPRILLGLTATP 453

Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR-IEIL-GQF 288
            R +G     +            + R  E I  G           DS   R +    G++
Sbjct: 454 ERSDGLDIRSWFDGR-----IAAEIRLPEAIGRGLLVPFHYFGVSDSVDYRSVRWERGRY 508

Query: 289 PQQEVNNFIPHNYIEEAMS 307
              +++N I  + +   + 
Sbjct: 509 NLSDLDNVITGDDLRAGII 527


>gi|161502580|ref|YP_001569692.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160863927|gb|ABX20550.1| hypothetical protein SARI_00626 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 564

 Score = 37.6 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 58/190 (30%), Gaps = 19/190 (10%)

Query: 54  WQLEFMEAVDVHCHSNVNNSNPTIFKC------AISAGRGIGKTTLNAWMMLWLISTRPG 107
           WQ   +  V  H   N  +  P            +  G G GK+TL   M+L  +     
Sbjct: 320 WQTLELRNVVFHYQDNAFSVGPINLTIHCGELLFLIGGNGSGKSTLA--MLLTGLYQPQS 377

Query: 108 MSII----CIANSETQLKNTLWAEV--SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
            +I+     IA  + +    L++ V    WL         +  + +L         +   
Sbjct: 378 GAILLDGQPIAAGQPEDYRKLFSAVFTDVWLFDRLLGPQGKPANPALVDKWLEHLKMTHK 437

Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-----KSILGFFT 216
           + ++         +  +++    +         +  DE +   D        + +L    
Sbjct: 438 LELNDGRILNLNLSKGQKKRIALLLALAEERDIILLDEWAADQDPHFRREFYQVLLPLMQ 497

Query: 217 ELNPNRFWIM 226
           ++    F I 
Sbjct: 498 KMGKTIFAIS 507


>gi|117620721|ref|YP_858279.1| hypothetical protein AHA_3837 [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562128|gb|ABK39076.1| conserved hypothetical protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 688

 Score = 37.6 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 41/350 (11%), Positives = 83/350 (23%), Gaps = 86/350 (24%)

Query: 39  GIKGKPLEHFSQPHRWQ-----LEFMEAVDVHCHSNVNNSNPTIFKCAISAG-RGIGKTT 92
           G K   L   +    WQ                 +     +    +  + +  RG GK++
Sbjct: 143 GEKALELTPPATTTPWQPVGPARPLSCDQARALPAIHKVLHGHRRRPLVLSADRGRGKSS 202

Query: 93  LNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSG 152
           L       L+  +P + I+  A S+  +   L+A  ++ L  +P             P  
Sbjct: 203 LLGLAAAELLRQQPDLQIVVTAPSQATVAT-LFAHAARALEDVP---QLLAGLSYCSPDR 258

Query: 153 WYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212
              E L+                                   +  DEA+  P  +   + 
Sbjct: 259 LVHEPLQPD--------------------------------LLLVDEAAAIPTPL---LE 283

Query: 213 GFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED----WKRYQ--IDTRTVEGIDSGF- 265
                     F             F+  F   L+     W+        R          
Sbjct: 284 AMLARHGRIVFATTEHGYEGTGRGFHLRFKRVLDRETPGWQEIHLAEPIRWSSRDPLEPL 343

Query: 266 ------HEGIISRYGLDSDVARIEILGQFPQQEVNNFI----------------PHNYIE 303
                     +      +      +       +                        Y+ 
Sbjct: 344 VFRLLGLNAEVETPPAPTQPGWRRLEQDALAADEGLLHRVFGLLVLAHYQTTPSDLRYLL 403

Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD--WSAK 351
           E+ + +       P ++G            +V R G I + + +  W+ +
Sbjct: 404 ESPTLDIHLLEQGPHLLGV----------ALVAREGEIADELAEAIWAGR 443


>gi|300865509|ref|ZP_07110299.1| Pentapeptide repeat protein [Oscillatoria sp. PCC 6506]
 gi|300336498|emb|CBN55449.1| Pentapeptide repeat protein [Oscillatoria sp. PCC 6506]
          Length = 727

 Score = 37.6 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 40/157 (25%), Gaps = 6/157 (3%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
           E +  +D           P   +    AG   GKT L       +    P   I  +  +
Sbjct: 229 ERLYELDFQQEHIGKEIPPGFQRMRGIAG--SGKTVLLCQKAAHIHLKHPDWDIALVFFT 286

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
              L + +   V +WL    +         +      +A   +   G+ S          
Sbjct: 287 -RTLYDLMIGLVDRWLRRFTNGDVQYDSKTNKKLRILHAWGGKNQPGLYSTICEFNGVRS 345

Query: 177 S--EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211
               E P+          +     E      I +  +
Sbjct: 346 RTAGETPER-QPNRGLAELCKRLSEEIKIEPIFDAIL 381


>gi|296811440|ref|XP_002846058.1| N-acetyltransferase 10 [Arthroderma otae CBS 113480]
 gi|238843446|gb|EEQ33108.1| N-acetyltransferase 10 [Arthroderma otae CBS 113480]
          Length = 1073

 Score = 37.6 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 41/150 (27%), Gaps = 15/150 (10%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q + +             S        ++A RG GK+     + +         +I   +
Sbjct: 261 QAKALLTFVDAIAEKTLRST-----VTLTAARGRGKSAAL-GVAVSAAIAHGYSNIFITS 314

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            S   LK  L+  V K    L +    +   L      +   ++  ++    +      +
Sbjct: 315 PSPENLKT-LFEFVFKGFDELGYLDHVDYTILQSTNPDFNKAIVRVNVHRQHRQTIQYIQ 373

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                               +  DEA+  P
Sbjct: 374 PQDAFALGQAE--------LLVIDEAAAIP 395


>gi|171692537|ref|XP_001911193.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946217|emb|CAP73018.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1920

 Score = 37.6 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 28/259 (10%), Positives = 61/259 (23%), Gaps = 29/259 (11%)

Query: 32   VMRFFPWGIKGKPLEHFS----QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRG 87
            +    P G+    ++       Q   +QL+ +  +       +N               G
Sbjct: 1062 MNFQNPTGMGDVEIDQPKLLNCQLKEYQLKGLNWLVNLYEQGINGILADEM--------G 1113

Query: 88   IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
            +GKT  +  +M +L           +    + L N    E++K++       ++   +  
Sbjct: 1114 LGKTVQSISVMAYLAEKYDIWGPFLVVAPASTLHN-WQQEITKFVPEFKVLPYWGTAADR 1172

Query: 148  LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207
                 +      +              T  +                +  DEA       
Sbjct: 1173 KVLRKF---WDRKHTTYKKDAAFHVMITSYQLVVSDVAYFQKMKWQYMILDEAQAIKSSS 1229

Query: 208  NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW---KRYQIDTRTVEGIDSG 264
              S        +     ++T            I N   E W                 S 
Sbjct: 1230 -SSRWKCLLSFHCRNRLLLTGTP---------IQNNMQELWALLHFIMPSLFDSHDEFSE 1279

Query: 265  FHEGIISRYGLDSDVARIE 283
            +    I  +   +     +
Sbjct: 1280 WFSKDIESHAQSNTKLNQD 1298


>gi|317035030|ref|XP_001400925.2| ATP-dependent helicase dcl2 [Aspergillus niger CBS 513.88]
          Length = 1407

 Score = 37.6 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 46/157 (29%), Gaps = 20/157 (12%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P  +Q+E  EA                    ++ G G GKT +    ++  + + P   I
Sbjct: 19  PRSYQVEMFEA-------------SLKENIIVTMGTGSGKTHIALLRIIKELESNPHKLI 65

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
             +  +   L    +  +S  +  +  R    +  + L       + + + M +    + 
Sbjct: 66  WFLTPTVA-LCLQQFKFLSDNIPAVRARTLTSLDKVELWTEQPVWDAILKEMQVVVSTHA 124

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207
           +     S            T    +  DEA       
Sbjct: 125 VLADAMSHG------FVKITQLGLMIFDEAHHCMRRH 155


>gi|158706449|sp|A2R345|DCL21_ASPNC RecName: Full=Dicer-like protein 2-1; Includes: RecName:
           Full=Endoribonuclease dcl2-1; Includes: RecName:
           Full=ATP-dependent helicase dcl2-1
          Length = 1387

 Score = 37.6 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 46/157 (29%), Gaps = 20/157 (12%)

Query: 51  PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110
           P  +Q+E  EA                    ++ G G GKT +    ++  + + P   I
Sbjct: 19  PRSYQVEMFEA-------------SLKENIIVTMGTGSGKTHIALLRIIKELESNPHKLI 65

Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170
             +  +   L    +  +S  +  +  R    +  + L       + + + M +    + 
Sbjct: 66  WFLTPTVA-LCLQQFKFLSDNIPAVRARTLTSLDKVELWTEQPVWDAILKEMQVVVSTHA 124

Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207
           +     S            T    +  DEA       
Sbjct: 125 VLADAMSHG------FVKITQLGLMIFDEAHHCMRRH 155


>gi|312212396|emb|CBX92479.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1753

 Score = 37.6 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 35/118 (29%), Gaps = 3/118 (2%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKTT  A ++        G S++  + + T + N L       +  L      ++   
Sbjct: 1206 GTGKTTTIAHII--RTLVAKGKSVLLTSYTHTAVDNILLKIRDDKIGTLRLGASAKVHPE 1263

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                +   AE  + S+    + +       +                    DEAS   
Sbjct: 1264 VREFAILAAEP-KGSVEELERSWMEPPVVATTCLTINHPLFSRRVFDYCIVDEASQIT 1320


>gi|288947725|ref|YP_003445108.1| ATP-dependent DNA helicase, RecQ family [Allochromatium vinosum DSM
            180]
 gi|288898241|gb|ADC64076.1| ATP-dependent DNA helicase, RecQ family [Allochromatium vinosum DSM
            180]
          Length = 1715

 Score = 37.6 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/169 (12%), Positives = 42/169 (24%), Gaps = 14/169 (8%)

Query: 56   LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICI 113
               +  +       +  + P      + AG G GKT +    + WL+         I+ +
Sbjct: 1077 RRILVDLRNPAQQAIVAAPPEG-SLLVLAGPGSGKTRVIVHRVAWLLRQGMAHPQDIMVL 1135

Query: 114  ANSETQLKNT---LWAEV------SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164
            A + + +      LWA V          ++          S ++             +  
Sbjct: 1136 AYNRSAVSEIRHRLWALVGPEAVGVSVQTVHGLAMRLTGTSYAVALERGEKIDFTTVLRQ 1195

Query: 165  DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213
             +       R    E  +            +  DE           I  
Sbjct: 1196 ATARLKQAEREDVSESTERDRLLAG--LRFLLIDEYQDINGEHYDLISA 1242


>gi|86159143|ref|YP_465928.1| PhoH-like protein [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775654|gb|ABC82491.1| PhoH-like protein [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 354

 Score = 37.6 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 35/129 (27%), Gaps = 14/129 (10%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKT L   M +  +  R    I+    +             +    L        + +
Sbjct: 143 GTGKTYLAMAMAVSYLVERRVKRIVLTRPA------------VEAGERLGFLPGDIAEKV 190

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
           + +    +  L    M    K      R   E  P  F+     +   +  DEA  T   
Sbjct: 191 NPYLRPLHDALF--DMVDYEKATAFIERGTVEVAPLAFMRGRTLNDAFIILDEAQNTTAE 248

Query: 207 INKSILGFF 215
             K  L   
Sbjct: 249 QMKMFLTRL 257


>gi|55379689|ref|YP_137539.1| signal recognition 54 kDa protein [Haloarcula marismortui ATCC
           43049]
 gi|74552458|sp|Q5UY20|SRP54_HALMA RecName: Full=Signal recognition 54 kDa protein; AltName:
           Full=SRP54
 gi|55232414|gb|AAV47833.1| signal recognition 54 kDa protein [Haloarcula marismortui ATCC
           43049]
          Length = 469

 Score = 37.6 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/228 (9%), Positives = 47/228 (20%), Gaps = 14/228 (6%)

Query: 13  QELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNN 72
           +E+   L+ A+  +     +          +     + P  W L  +    V        
Sbjct: 33  KEIQRSLLQADVDVGLVQDLSNSIETRALDEEPPAGTTPRDWVLRIVYEELVDLVGESTE 92

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
                    ++   G GKTT  A M  W  +     +II          +          
Sbjct: 93  LPLEEQTIMLAGLYGSGKTTTAAKMAWWFSTKGLRPAIIQTDTDRPGAYD--------QS 144

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN--- 189
             +  R   +                      ++    +          +          
Sbjct: 145 KEMAERAEVDFYGDPDEDDPVKIARDGLEATENADVRIVDTAGRDGLNEELIEQIERIEQ 204

Query: 190 ---THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
                   +  D A G       +       ++      +    +   
Sbjct: 205 EVQPDRDLLVLDAAMGQSAKSQAADFEAAIGIDGVVITKLDGTAKGGG 252


>gi|224371767|ref|YP_002605931.1| putative ATP-dependent DNA helicase [Desulfobacterium autotrophicum
            HRM2]
 gi|223694484|gb|ACN17767.1| putative ATP-dependent DNA helicase [Desulfobacterium autotrophicum
            HRM2]
          Length = 1740

 Score = 37.6 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 46/175 (26%), Gaps = 19/175 (10%)

Query: 56   LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICI 113
             + +++++ H    +  ++P      + AG G GKT        WLI  +     SI+ +
Sbjct: 1107 KKIIQSLEDHTQEAIVAASPE-KNILVLAGPGSGKTRTIVHRCAWLIKAKSIDPASILVL 1165

Query: 114  ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173
                 Q    L   +        +                    L +  G  S   T+  
Sbjct: 1166 C-FNHQAMIELRKRIRALTGRSANAVTAM-TYHGFAMRLTGRSFLAKQTGPASGKKTMGF 1223

Query: 174  RTYSEERPDTFVGPH--------------NTHGMAVFNDEASGTPDIINKSILGF 214
                +E  +   G                      +  DE     D   + I   
Sbjct: 1224 DAIIDEAVEMLNGEREIVGIDQSETRQILLAQYRYLLVDEYQEIDDRQYRFISAL 1278


>gi|94677005|ref|YP_588596.1| DNA helicase II [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|94220155|gb|ABF14314.1| DNA helicase II [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 646

 Score = 37.6 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 3/76 (3%)

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI--STRPGMSIICIANSETQLKNTL 124
           +      +  +    + AG G GKT +    + WL+     P  SI+ +  +        
Sbjct: 12  NKQKEAVSAPLGNILVLAGAGSGKTRVLTHRIAWLLAVENNPPSSILAVTFTNKAATEMY 71

Query: 125 WAEVSKWLSMLPHRHW 140
           +  +   L   P   W
Sbjct: 72  YR-IKNILGKHPCGMW 86


>gi|325687746|gb|EGD29767.1| phage terminase large subunit [Streptococcus sanguinis SK72]
          Length = 530

 Score = 37.6 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 36/330 (10%), Positives = 79/330 (23%), Gaps = 56/330 (16%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ + +  +      + N    T +   +   +  GK+ L A     +           
Sbjct: 48  PWQEQIVRDLFGIVKEDGNRQFLTAY---VEIPKKNGKSELAAA----IALYLLYADGEA 100

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            A       +   A +            F++    +  S    +  +             
Sbjct: 101 SAEVYGAACDRNQASIV-----------FDVAKQMVLMSRALEKRSKVMGATKRIINYSN 149

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT-- 230
              Y     +T    H  +   +  DE    P+     +L   +     +       T  
Sbjct: 150 AGFYQVLSAETG-TKHGLNVSGLVFDEIHAQPNRHLYDVLTKGSGDAREQPLFFIITTAG 208

Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVE------------------------------G 260
              N   Y++    LE  K  + D+                                   
Sbjct: 209 NDKNSICYELHTKALEILKGRKKDSSFYPVVYGLSEEEDWNDEENWLKANPSLGHTIGID 268

Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLI 319
                +   +     + +V +   L  +    V  +IP +  ++     +          
Sbjct: 269 RVREAYLNALDNPAEE-NVFKQLRLNIWTNSAVT-WIPEHIYDKGSQPIDVEILKGRDCY 326

Query: 320 MGCDIAGEGGDKTVVVFRRGNIIEHIFDWS 349
            G D++    D T  V         + ++ 
Sbjct: 327 AGLDLSST-SDITAFVLIFPPR-REVENYQ 354


>gi|116194234|ref|XP_001222929.1| hypothetical protein CHGG_03715 [Chaetomium globosum CBS 148.51]
 gi|88179628|gb|EAQ87096.1| hypothetical protein CHGG_03715 [Chaetomium globosum CBS 148.51]
          Length = 1361

 Score = 37.6 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 49/185 (26%), Gaps = 14/185 (7%)

Query: 15   LHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSN 74
            L   L     +     F +  FP G +         P   Q    + V  H    V+  +
Sbjct: 880  LSNQLWKETKLAHPLGFDVGDFPDGAEDT-----LSPQ--QRLIYDMVMTHDQQTVDGLH 932

Query: 75   PTIFKCAISAGRGIGKTT---LNAWMMLWLIST--RPGMS--IICIANSETQLKNTLWAE 127
            P   +  I    G GK+    L +  +        RP     +I  A +           
Sbjct: 933  PPPLRLNIDGRGGSGKSYAIKLISAYLYKRAVQQARPDAENIVIRSAPTGVAANGIQGTT 992

Query: 128  VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187
            +   L +      FE  S     +        + + ID +           +     + P
Sbjct: 993  LHSLLRLPVGIVAFEPLSPPDVAAAQARLQSLKYLVIDEETMISLKTMGFIDNRLRHIFP 1052

Query: 188  HNTHG 192
             +   
Sbjct: 1053 RSNEP 1057


>gi|300214917|gb|ADJ79333.1| ATP-dependent RNA helicase [Lactobacillus salivarius CECT 5713]
          Length = 426

 Score = 37.6 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 56/242 (23%), Gaps = 30/242 (12%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
           E F++P   Q      +                     A  G GKT   +  +L  I  +
Sbjct: 12  EGFTEPTLIQKYVYPKLAEG------------KNVVGLAPTGSGKTLAYSLPLLEKILPK 59

Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
            G  ++ +A S+                    R W ++  LS+      A +  Q   + 
Sbjct: 60  DGSQLLIMAPSQELAAQLT----------NTIRPWAKLLDLSVIGLLGGANVKRQIEKLK 109

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRF 223
                +                      ++  DEA      +     +    +       
Sbjct: 110 KHPEVVIGTPGRLLNLIKLKKLKLHKIESIVIDEADEMLGDEDSLNDVREIVSHCPSEAQ 169

Query: 224 WIMTSNTRRLN-GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI 282
               S T        +  F + +E     + D              +I            
Sbjct: 170 ISFFSATEAPILSELHRWFGVDVEKIDVRKED-----NTRGEVTNYMIETPTRKRTEMLR 224

Query: 283 EI 284
            +
Sbjct: 225 RL 226


>gi|46110288|ref|XP_382202.1| hypothetical protein FG02026.1 [Gibberella zeae PH-1]
 gi|84029313|sp|Q4IL82|INO80_GIBZE RecName: Full=Putative DNA helicase INO80
          Length = 1904

 Score = 37.6 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 31/247 (12%), Positives = 59/247 (23%), Gaps = 29/247 (11%)

Query: 32   VMRFFPWGIKGKPLEHFS----QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRG 87
            +    P G+    +E       Q   +QL+ +  +       +N               G
Sbjct: 1022 MNFQNPTGLGDVEIEQPKLINAQLKEYQLKGLNWLVNLYEQGINGILADEM--------G 1073

Query: 88   IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
            +GKT  +  +M +L           +    + L N    E++K++       ++   S  
Sbjct: 1074 LGKTVQSISVMAYLAEKHDIWGPFLVVAPASTLHN-WQQEIAKFVPEFKILPYWGGASDR 1132

Query: 148  LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207
                 +      +            C T  +                +  DEA       
Sbjct: 1133 KVLRKF---WDRKHTTYRKDAPFHVCVTSYQLVVSDVAYFQKMRWQYMILDEAQAIKSSQ 1189

Query: 208  NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW---KRYQIDTRTVEGIDSG 264
              S        +     ++T            I N   E W                 S 
Sbjct: 1190 -SSRWKALLNFHCRNRLLLTGTP---------IQNNMQELWALLHFIMPSLFDSHDEFSE 1239

Query: 265  FHEGIIS 271
            +    I 
Sbjct: 1240 WFSKDIE 1246


>gi|296423868|ref|XP_002841474.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637714|emb|CAZ85665.1| unnamed protein product [Tuber melanosporum]
          Length = 993

 Score = 37.6 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 41/150 (27%), Gaps = 15/150 (10%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q + +             S        ++AGRG GK+      +          +I   +
Sbjct: 263 QAKAIMTFVDAITEKTLRST-----VTLTAGRGRGKSAALGVAIA-AAVAHGYSNIFITS 316

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            S   LK  L+  + K    L +    +   +      +   ++  ++    +      +
Sbjct: 317 PSPENLKT-LFEFIFKGFDALNYSDHLDYDIIQSTNPAFNKAIVRVNIHRQHRQTIQYIQ 375

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                               V  DEA+  P
Sbjct: 376 PQDAHVLGQAE--------LVVVDEAAAIP 397


>gi|67523659|ref|XP_659889.1| hypothetical protein AN2285.2 [Aspergillus nidulans FGSC A4]
 gi|74681303|sp|Q5BAZ5|INO80_EMENI RecName: Full=Putative DNA helicase ino80
 gi|40745240|gb|EAA64396.1| hypothetical protein AN2285.2 [Aspergillus nidulans FGSC A4]
 gi|259487678|tpe|CBF86533.1| TPA: Putative DNA helicase ino80 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5BAZ5] [Aspergillus
           nidulans FGSC A4]
          Length = 1612

 Score = 37.6 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/191 (11%), Positives = 46/191 (24%), Gaps = 23/191 (12%)

Query: 87  GIGKTTLNAWMMLWLISTRP---GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143
           G+GKT  +  +M +L           +I  A++          E++K++  +    ++  
Sbjct: 826 GLGKTIQSISVMAYLAEVHNIWGPFLVIAPASTLHN----WQQEITKFVPNIKVLPYWGN 881

Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
                    +      + +    +       T  +                +  DEA   
Sbjct: 882 AKDRKILRKF---WDRKHITYTKESEFHVLVTSYQLVVLDAQYFQKVKWQYMILDEAQAI 938

Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW---KRYQIDTRTVEG 260
                 S        +     ++T            I N   E W               
Sbjct: 939 KSSQ-SSRWKSLLGFHCRNRLLLTGTP---------IQNNMQELWALLHFIMPTLFDSHD 988

Query: 261 IDSGFHEGIIS 271
             S +    I 
Sbjct: 989 EFSEWFSKDIE 999


>gi|167758728|ref|ZP_02430855.1| hypothetical protein CLOSCI_01070 [Clostridium scindens ATCC 35704]
 gi|167663646|gb|EDS07776.1| hypothetical protein CLOSCI_01070 [Clostridium scindens ATCC 35704]
          Length = 210

 Score = 37.6 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 19/168 (11%), Positives = 46/168 (27%), Gaps = 7/168 (4%)

Query: 80  CAISAGRGIGKTTLNAWMML---WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136
             +    G  KT     + L   + +  +    I+    +  Q  + +          + 
Sbjct: 10  VIVKGMAGTAKTFYAVAVGLEKVFNVEKKEYRKILISRPN-AQFDDDIGYLPGTEQEKIS 68

Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196
                 + +L         E  +    + +K   +  R   E     F+   +     + 
Sbjct: 69  PLMRPIIDNLEQLIDSDEEERYKDEEELHAKIDELFSRGLIETEAMNFIRGRSFVNTYLI 128

Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244
            DEA          + G  T        I+  + ++++  + D     
Sbjct: 129 IDEAQNMTPKQ---VTGIITRAGKGTKVILLGDPKQIDNPYLDEQTNG 173


>gi|260654704|ref|ZP_05860194.1| UvrD/REP helicase family protein [Jonquetella anthropi E3_33 E1]
 gi|260630720|gb|EEX48914.1| UvrD/REP helicase family protein [Jonquetella anthropi E3_33 E1]
          Length = 1181

 Score = 37.6 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 60/237 (25%), Gaps = 5/237 (2%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTR-PGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
             +SAG G GKT   AW  LW ++   P  SI+ +  +E   +       +    +    
Sbjct: 38  TVVSAGAGTGKTWTLAWRFLWCMAQGAPAPSILTLTFTEKAAEEMRSRIAALTEGVARQA 97

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV--GPHNTHGMAVF 196
                  LS   +     L    +           +      P +              +
Sbjct: 98  KEAGCVRLSEVLNEGRRCLDSAYISTIHGFCLRVIKETGLSLPVSPSCRLVSAPEEEFFW 157

Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256
              A               +       W    ++                D  ++     
Sbjct: 158 RQVADALEKNDAGWFANRLSCSPGRADWPSVLSSPWTADVL--NGREQANDIAQFSRAAE 215

Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
            +E    G  E +    G + +V         P+     F     + +A  R  +++
Sbjct: 216 NLETARGGAPEDLWRSEGREKEVIESLRAAYEPEARAQVFRLRRILRDAAVRNLLEN 272


>gi|294659465|ref|XP_002770589.1| DEHA2G06820p [Debaryomyces hansenii CBS767]
 gi|199433984|emb|CAR65924.1| DEHA2G06820p [Debaryomyces hansenii]
          Length = 1531

 Score = 37.6 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 46/157 (29%), Gaps = 5/157 (3%)

Query: 51   PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR-GIGKTTLNAWMMLWLISTRPGMS 109
            P + Q +              +        ++  G  G GKTT+ A ++   +  +   +
Sbjct: 1046 PSKLQYDISSENFNSDQIGAFDKILNTKDYSLILGMPGTGKTTVIAQII--KLLVQNKKT 1103

Query: 110  IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL--LEQSMGIDSK 167
            ++  + + + + N L       + +L      ++          +     ++      + 
Sbjct: 1104 VLLASYTHSAVDNILLKVKDYGIDILRVGSPLKVHKDIRKYVAGFDTDKQIKNYDDFIAT 1163

Query: 168  HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
            + T      +            TH      DEAS   
Sbjct: 1164 YMTPPVVAATCLGIGDIAFNLRTHFDYCIIDEASQVS 1200


>gi|159462656|ref|XP_001689558.1| DEAD/DEAH-box helicase [Chlamydomonas reinhardtii]
 gi|158283546|gb|EDP09296.1| DEAD/DEAH-box helicase [Chlamydomonas reinhardtii]
          Length = 485

 Score = 37.6 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 22/201 (10%), Positives = 45/201 (22%), Gaps = 17/201 (8%)

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
                             + A  G GKT +       + +   G  +I     +      
Sbjct: 7   DGFQRRALELFLQGQSVVVCAPTGAGKTAIAEAAA--VAALARGQRVIYTTPLKALSNQK 64

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
           L+    ++       H               A+++  +  I       T     E     
Sbjct: 65  LFETRRRF------GHARCGLQTGDANLNPDADIVVMTTEILRNIMYRTAELAEENNT-G 117

Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM-----TSNTRRLNGWFY 238
             G    +   +  DE     D    S+        P    ++      +N + L  W  
Sbjct: 118 GNGARLGNVGLIVLDEVHYLGDPHRGSVWEEVIINCPRHIQLLCMSATVANPKDLGDWIA 177

Query: 239 DI---FNIPLEDWKRYQIDTR 256
                       ++   +   
Sbjct: 178 KEHMPCETIQTRFRPVPLHWH 198


>gi|145635037|ref|ZP_01790743.1| DNA helicase II [Haemophilus influenzae PittAA]
 gi|145267645|gb|EDK07643.1| DNA helicase II [Haemophilus influenzae PittAA]
          Length = 726

 Score = 37.6 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 81/302 (26%), Gaps = 29/302 (9%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIA 114
           E ++ ++      V           + AG G GKT +    + WLI+       SI+ + 
Sbjct: 5   ELLDGLNDKQREAVAAPLGNH---LVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            +            S       H+ +          +          +G+      +   
Sbjct: 62  FTNKAAAEMRHRIQSTLAKHAQHQLFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSE 121

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
                     +  HN        DE +  P       +    +               + 
Sbjct: 122 -DQLRLIKRLLKLHN-------FDEKAF-PPKQACWYINNKKDEGLR--------PNDIE 164

Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294
            +        ++ ++ YQ        +D       +        +       +F    V+
Sbjct: 165 DFNDRQEREWIKIYQIYQDTCDRAGLVDFAELLIRVYELFEKKPLILQRYQQRFQHILVD 224

Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354
            F   N I+     + +      +++  D      D++ +   RG  IE+I  +      
Sbjct: 225 EFQDTNKIQYK-WIKILAGKTGKVMIVGD-----DDQS-IYGWRGAQIENIQKFLKDFKT 277

Query: 355 ET 356
           ET
Sbjct: 278 ET 279


>gi|328773858|gb|EGF83895.1| hypothetical protein BATDEDRAFT_29142 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 1016

 Score = 37.6 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 42/125 (33%), Gaps = 10/125 (8%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             ++A RG GK+     + +    +    +I   + S   +K  L+  + K    L +  
Sbjct: 280 VTLTASRGRGKSASL-GIAIASAISYGYSNIFITSPSPENIKT-LFEFIFKGFDALGYEE 337

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +   +      +   ++  +   D +      +T    +P  F          +  DE
Sbjct: 338 HLDYDIIQSTNPAFQKSIVRVNFFRDHR------QTIQWIQPSDFGIL--AQAELLVIDE 389

Query: 200 ASGTP 204
           A+  P
Sbjct: 390 AAAIP 394


>gi|221122502|ref|XP_002157615.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 925

 Score = 37.6 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 52/161 (32%), Gaps = 11/161 (6%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFK-CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113
           Q + ++            S  T+     ++A RG GK+     + L    T    +I   
Sbjct: 168 QCKTLDQAKSVLKFIEVISEKTLRSTVTLTAARGRGKSAAI-GLALASAVTFGYSNIFVT 226

Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173
           + S   LK  L+  + K    L ++   + + +      +   ++  ++  + +      
Sbjct: 227 SPSPENLKT-LFEFIFKGFDALNYQEHLDYEIIQSTNPDFNKAVVRVNIFREHRQTIQYI 285

Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF 214
                 +              +  DEA+  P    K ++G 
Sbjct: 286 SPTDHHKLGQAE--------LLAIDEAAAIPLPYVKQLIGP 318


>gi|156406979|ref|XP_001641322.1| predicted protein [Nematostella vectensis]
 gi|156228460|gb|EDO49259.1| predicted protein [Nematostella vectensis]
          Length = 1001

 Score = 37.6 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/150 (12%), Positives = 44/150 (29%), Gaps = 15/150 (10%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q + +             +       +++A RG GK+     + L         ++   +
Sbjct: 260 QAKALLKFIEAISEKTLRTT-----VSLTAARGRGKSAAI-GLALASAVAFGYSNMFVTS 313

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            S   L   L+  V K    L ++   + + +      +   ++  ++  D +       
Sbjct: 314 PSPENLHT-LFEFVFKGFDALDYQEHIDYELVQSTNPEFNKAVVRINIFRDHRQTIQYIH 372

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                +              +  DEA+  P
Sbjct: 373 PSDAHKLGQAE--------LLCIDEAAAIP 394


>gi|254556146|ref|YP_003062563.1| DNA replication protein [Lactobacillus plantarum JDM1]
 gi|254045073|gb|ACT61866.1| DNA replication protein [Lactobacillus plantarum JDM1]
          Length = 261

 Score = 37.6 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 54/190 (28%), Gaps = 12/190 (6%)

Query: 4   LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEF----- 58
            + T ++L+ +  +           + +      W   G PL      + WQ++      
Sbjct: 26  KLPTKEELDHQTIDRANAGVIANRKRYYYRMSV-W-SGGVPLRFS--FNDWQVDKQPNQA 81

Query: 59  -MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
               +               F  A++ G G+GKT+L   +M  L+S       +  A   
Sbjct: 82  KARELGNQAFKLARQLETNQFNVALAGGPGVGKTSLALAIMYQLMSVGQTAMFVSTAELL 141

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
             +      +       L +      +   L    +  E  + +     K      RT  
Sbjct: 142 RLVNEKY--DAPDVRERLNYVLKDMKKVDVLVLDDFGTEGGKPTEKGFYKPVHKDLRTLM 199

Query: 178 EERPDTFVGP 187
            +  +     
Sbjct: 200 YDVANARWNL 209


>gi|302343090|ref|YP_003807619.1| metal dependent phosphohydrolase [Desulfarculus baarsii DSM 2075]
 gi|301639703|gb|ADK85025.1| metal dependent phosphohydrolase [Desulfarculus baarsii DSM 2075]
          Length = 741

 Score = 37.6 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 45/151 (29%), Gaps = 12/151 (7%)

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET-------QLKNTLWAE 127
           P +F   +    G GKT  +    L          +I +    +        +++ L  +
Sbjct: 239 PGLFSLTV--PTGGGKTYSSLAFALRHAHGHGLRRVIYVIPYTSIIDQNASVMRDALGDD 296

Query: 128 -VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
            V +  S LP     +    +       AE  +  + I +             +P     
Sbjct: 297 AVLEHHSSLPVNDDQKDDGAAFRRGDLAAENWDAPLVITTNVQFFESLFA--NKPGKCRK 354

Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTE 217
            HN  G  +  DEA   P    +  L    E
Sbjct: 355 LHNIAGSVIILDEAQMLPRDQLRPCLAALRE 385


>gi|156053429|ref|XP_001592641.1| hypothetical protein SS1G_06882 [Sclerotinia sclerotiorum 1980]
 gi|154704660|gb|EDO04399.1| hypothetical protein SS1G_06882 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1559

 Score = 37.6 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 36/118 (30%), Gaps = 3/118 (2%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKTT  A ++        G S++  + + T + N L       + +L      ++   
Sbjct: 1130 GTGKTTTIAHII--RALVSQGKSVLLTSYTHTAVDNILLKLRDDSIPILRLGAKAKIHPD 1187

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                +    +  E    I S  +       S    +     +         DEAS   
Sbjct: 1188 VQEFAKLAIDPKETMEEIRSVWHGTPIIATSCLGINHP-IFNERTFDYCIVDEASQIT 1244


>gi|301101790|ref|XP_002899983.1| DNA2-like helicase [Phytophthora infestans T30-4]
 gi|262102558|gb|EEY60610.1| DNA2-like helicase [Phytophthora infestans T30-4]
          Length = 1500

 Score = 37.6 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 49/152 (32%), Gaps = 5/152 (3%)

Query: 57   EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
            +    +++     V     ++    +    G GKT   A+ +  L+    G S++  + +
Sbjct: 972  DAFFELNIDQQRAVQRVLSSLDYALVLGMPGTGKTATIAYTVRVLLFL--GFSVLVTSYT 1029

Query: 117  ETQLKNTLWAEVSKWLSMLPHRHWFEM---QSLSLHPSGWYAELLEQSMGIDSKHYTITC 173
             + + N L   ++    ML   +  ++    S          E +     +++K      
Sbjct: 1030 HSAVDNLLLKLLAYKTPMLRIGNTAQVHPMISDFTLDRQAGREGIFSVRAMEAKMVRAQL 1089

Query: 174  RTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
               +    ++ V            DEA+    
Sbjct: 1090 VGCTCLSVNSHVLFTKRRFDFCIVDEATQITQ 1121


>gi|332289276|ref|YP_004420128.1| type I restriction enzyme EcoKI subunit R [Gallibacterium anatis
           UMN179]
 gi|330432172|gb|AEC17231.1| type I restriction enzyme EcoKI subunit R [Gallibacterium anatis
           UMN179]
          Length = 1114

 Score = 37.6 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 73/240 (30%), Gaps = 22/240 (9%)

Query: 39  GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98
               +    F     +Q+  ++AV+                  ++   G GKT     ++
Sbjct: 382 QKLEQEPFDFLGLRYYQVNAIKAVEQSLAEGKRE-------MLLAMATGTGKTRTITGLI 434

Query: 99  LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
              + +     I+ + +     + +L  + +   + +           +      Y   +
Sbjct: 435 HRFLKSDRFRRILFLVD-----RTSLANQANDTFNEMKVEP-------NQSLQTLYNFAV 482

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218
              + I++K    T ++  ++   +   P       +  DEA     +  +   G     
Sbjct: 483 NGEVEIETKVKVATVQSLVKQIFYSADQPPIDQFDCIIVDEAHRGYTLDQEMTDGELAFQ 542

Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278
           N  ++    S  RR+  +F  +          +  +          + E +I  Y +D +
Sbjct: 543 NNEQY---LSTYRRVLDYFDAVKIGLTATPALHTTEIFGEPVFVYSYKEAVIDDYLVDHE 599


>gi|260892060|ref|YP_003238157.1| PhoH family protein [Ammonifex degensii KC4]
 gi|260864201|gb|ACX51307.1| PhoH family protein [Ammonifex degensii KC4]
          Length = 319

 Score = 37.6 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 43/169 (25%), Gaps = 26/169 (15%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAIS--------AGRGIGKTTLNAWMMLWLISTRPGM 108
           E +                  +  AI            G GKT L   M +  +  R   
Sbjct: 96  EILLTTPRGKQVRPKTPGQKRYVDAIRRYDITFAIGPAGTGKTYLAVVMAVIWLRQRRIS 155

Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS--LSLHPSGWYAELLEQSMGIDS 166
            II    +          E  + L  LP R   ++      L+ S +    +E +     
Sbjct: 156 RIILTRPAV---------EAGEKLGFLPGRLEEKVDPYLRPLYDSLYDVLGVENTERYLE 206

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215
           +             P  ++         +  DEA  T     K  L   
Sbjct: 207 RRIIEIA-------PLAYMRGRTLEDAFIILDEAQNTTPEQMKMFLTRL 248


>gi|189189422|ref|XP_001931050.1| DNA replication helicase Dna2 [Pyrenophora tritici-repentis
            Pt-1C-BFP]
 gi|187972656|gb|EDU40155.1| DNA replication helicase Dna2 [Pyrenophora tritici-repentis
            Pt-1C-BFP]
          Length = 1298

 Score = 37.6 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 34/118 (28%), Gaps = 3/118 (2%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKTT  A ++        G S++  + + T + N L       + +L      +    
Sbjct: 1036 GTGKTTTIAHII--RTLVAKGKSVLLTSYTHTAVDNILLKIRDDKIGILRLG-TVKKIHP 1092

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
             +          + S+    + +       +          +         DEAS   
Sbjct: 1093 EVREFATLGVEPKDSVEELERSWMEPPVVATTCLTINHSLFNRRVFDYCIVDEASQIT 1150


>gi|281306698|ref|YP_003345504.1| predicted phage DNA maturase B [Pseudomonas phage phi-2]
 gi|271278003|emb|CBH51609.1| predicted phage DNA maturase B [Pseudomonas phage phi-2]
          Length = 596

 Score = 37.6 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 10/74 (13%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
            +        ++S        + A RG  K+TL     +W +   P   ++ ++ +E + 
Sbjct: 41  DMADFMQDCPDSSM-------VQAQRGEAKSTLACGFGIWQLIQDPRHRVMLVSGAEDKA 93

Query: 121 KN---TLWAEVSKW 131
           K     +   + +W
Sbjct: 94  KENGKLMKRTIMQW 107


>gi|292491415|ref|YP_003526854.1| capsular exopolysaccharide family [Nitrosococcus halophilus Nc4]
 gi|291580010|gb|ADE14467.1| capsular exopolysaccharide family [Nitrosococcus halophilus Nc4]
          Length = 757

 Score = 37.6 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 40/147 (27%), Gaps = 7/147 (4%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
                E   +V      +     P      +SAG+G GK+T  A + +       G  ++
Sbjct: 534 RSAFAEAYRSVRTALQFSTPKGAPKSL-LVVSAGKGEGKSTTAASLAIHFAQA--GEKVL 590

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +   +  L+N     V +  + L   H    ++  +  S          +         
Sbjct: 591 LV---DADLRNPSLHRVLEADNSLGLTHHLAGEATPVEISQPTTVPNLFLITAGPLPPDP 647

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFND 198
                S +               V  D
Sbjct: 648 AGLLGSAKMMSLLSTAK-EKFDHVILD 673


>gi|195164399|ref|XP_002023035.1| GL16389 [Drosophila persimilis]
 gi|194105097|gb|EDW27140.1| GL16389 [Drosophila persimilis]
          Length = 930

 Score = 37.6 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 50/173 (28%), Gaps = 5/173 (2%)

Query: 41  KGKPLEHFSQPHRWQLE---FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97
              PL   S P     E    ++ ++   +  V +   +     I    G GKT     +
Sbjct: 605 LDPPLPFDSLPDIILTEGLHILQYLNKQQNEAVMHCLSSNTHFLIKGLPGTGKTQTLVAL 664

Query: 98  MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
           +   +     +S++  A++ + + N +   ++  L ML       +       S      
Sbjct: 665 V--RMLHLLNLSVLITAHTHSAVDNLMNRLMAYGLPMLRLGQSARINDCLEEISEANVTR 722

Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS 210
             +++   ++                     N        DEA+       + 
Sbjct: 723 RCRTVDSLTRVLETPAIVGVTCLGTGHAVFRNRTFDYCIVDEATQVTPNTCEV 775


>gi|162135084|ref|YP_001595825.1| hypothetical protein [Pseudomonas phage YuA]
 gi|161513931|emb|CAO77757.1| hypothetical protein [Pseudomonas phage YuA]
          Length = 564

 Score = 37.6 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 61/205 (29%), Gaps = 12/205 (5%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
               H       S     + AI   +G GK+ L      WL        ++ +A +    
Sbjct: 8   EPFNHQREEWLRSREEEAR-AIFWEQGTGKSKLTIDTACWLWLRGLIDGVLVVAPNGVH- 65

Query: 121 KNTLWAEV-----SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
           +N +  E+      + +  +   H+   ++ +         ++E               T
Sbjct: 66  RNWVEKEIPDHVPDEVIKHVRAFHYQSPKASTKWHKQAVKAVIEHKGFAWLTISYEAFMT 125

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
            S +R    +   +   +    DEA        +             F  + + T    G
Sbjct: 126 ASGKRA--LIDFFDKRRLLYVLDEAHYIKTPTAERTKSILRSAKYAPFRRVLTGTPIAQG 183

Query: 236 WFYDIFNIP---LEDWKRYQIDTRT 257
            F     I     + WK++++ T T
Sbjct: 184 PFDAYSQIKFLIEDYWKQHRLGTFT 208


>gi|294815786|ref|ZP_06774429.1| Membrane translocator [Streptomyces clavuligerus ATCC 27064]
 gi|326444131|ref|ZP_08218865.1| membrane translocator [Streptomyces clavuligerus ATCC 27064]
 gi|294328385|gb|EFG10028.1| Membrane translocator [Streptomyces clavuligerus ATCC 27064]
          Length = 585

 Score = 37.6 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 42/162 (25%), Gaps = 19/162 (11%)

Query: 79  KCAISAGRGIGKTTLNAWM----------MLWL---ISTRPGMSIICIANSETQLKNTLW 125
           + A+    G GK+TL + +          + WL          ++  +   +  + +   
Sbjct: 382 RLAVVGPSGSGKSTLASVLAGVAAPTGGEVRWLGRPAGELDPTAVRTLLPQQPYVFSGTL 441

Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185
            +  ++L              ++        L      +D +  +   R           
Sbjct: 442 RDNLRYLRPKARDRELSATVAAIGLDALVERLGGLDTPLDPRRLSPGERQLVALGR---- 497

Query: 186 GPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNRFWIM 226
             H T    +  DEA S           G   E       I 
Sbjct: 498 -AHLTTAPLLILDEATSELDPEAEARAEGALAERAGAVLTIA 538


>gi|296807923|ref|XP_002844300.1| Dna2p [Arthroderma otae CBS 113480]
 gi|238843783|gb|EEQ33445.1| Dna2p [Arthroderma otae CBS 113480]
          Length = 1604

 Score = 37.6 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 38/122 (31%), Gaps = 11/122 (9%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML----PHRHWFE 142
            G GKTT  A ++        G S++  + + T + N L         +L    P +   E
Sbjct: 1103 GTGKTTTIAQII--RALVSQGKSVLLTSYTHTAVDNILLKIRDDKFRILRLGTPSKIHPE 1160

Query: 143  MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202
            +Q  +   +     + E     ++     T       R       +         DEAS 
Sbjct: 1161 VQQFAELAATPKNTIEELEDVYENSKVVATTCLGVNHR-----IFNTRTFDYCIVDEASQ 1215

Query: 203  TP 204
              
Sbjct: 1216 IT 1217


>gi|224124820|ref|XP_002319430.1| predicted protein [Populus trichocarpa]
 gi|222857806|gb|EEE95353.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score = 37.6 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 48/166 (28%), Gaps = 24/166 (14%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGR--------GIGKTTLNAWMMLWLISTRP--- 106
            M+ +  H ++   +        A+ +GR        G GKT      M+     +P   
Sbjct: 126 IMKDIAHHEYTRPTSIQAQAMTVAL-SGRDLLGCAETGSGKTAAFTIPMIQHCLAQPTVR 184

Query: 107 ---GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
              G   + +A +          E+++ +          ++S           + +Q + 
Sbjct: 185 RGDGPLALVLAPT---------RELAQQIEKEVKGFSRSLESFRTAIVVGGTNIADQRLE 235

Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209
           + +    I                  +    +  DEA    D+  +
Sbjct: 236 LRAGVDVIVATPGRLIDHLQQGNTSLSRISFIVLDEADRMLDMGFE 281


>gi|156379137|ref|XP_001631315.1| predicted protein [Nematostella vectensis]
 gi|156218353|gb|EDO39252.1| predicted protein [Nematostella vectensis]
          Length = 298

 Score = 37.6 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/134 (11%), Positives = 31/134 (23%), Gaps = 15/134 (11%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGM----SIICIANSETQLKNTLWAEVSKWLSML 135
               A  G GKT      +L  +  RP       ++ I  +                   
Sbjct: 36  VCACAATGTGKTAAFMLPILERLLYRPTQSPAIRVLVITPTRELAIQI----------HS 85

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP-DTFVGPHNTHGMA 194
              +  +  ++ +  +    +L  Q   +      +              +         
Sbjct: 86  VTNNLSKYTNIQVCLAAGGLDLKSQEAALRKNPDIVIATPGRLVDHLHNTMSFGLQSIEI 145

Query: 195 VFNDEASGTPDIIN 208
           +  DEA    D   
Sbjct: 146 LVLDEADRMLDEHF 159


>gi|320589784|gb|EFX02240.1| snf2 family helicase ATPase [Grosmannia clavigera kw1407]
          Length = 1885

 Score = 37.6 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 57/247 (23%), Gaps = 29/247 (11%)

Query: 32   VMRFFPWGIKGKPLEHFS----QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRG 87
            +    P G+    +E       Q   +QL+ +  +       +N               G
Sbjct: 983  MNFQNPTGLGDVEIEQPKLLNAQLKEYQLKGLNWLVNLYEQGINGILADEM--------G 1034

Query: 88   IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
            +GKT  +  +M +L           +    + L N    E++K++       ++      
Sbjct: 1035 LGKTVQSISVMAYLAEKYDIWGPFIVVAPASTLHN-WQQEINKFVPEFKVLPYWGSAGDR 1093

Query: 148  LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207
                 +      +              T  +                +  DEA       
Sbjct: 1094 KVLRKF---WDRKHSIYKKNAQFHVLVTSYQLVVSDVAFMSKMRWQYMILDEAQAIKSSQ 1150

Query: 208  NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW---KRYQIDTRTVEGIDSG 264
              S        +     ++T            I N   E W                 S 
Sbjct: 1151 -SSRWKVLLNYHCRNRLLLTGTP---------IQNNMQELWALLHFIMPSLFDSHDEFSE 1200

Query: 265  FHEGIIS 271
            +    I 
Sbjct: 1201 WFSKDIE 1207


>gi|311693564|gb|ADP96437.1| phage terminase GpA [marine bacterium HP15]
          Length = 653

 Score = 37.6 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 24/219 (10%), Positives = 51/219 (23%), Gaps = 18/219 (8%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
           +P   + ++  G  +GKT L A  +          S + +  S+  L   L  + +  + 
Sbjct: 71  HPGCHRISLMWGAQVGKTQL-ALCVQGYFIAHEPKSQMMMQPSQGDLTTWLETKFNPMVD 129

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
             P       +  S      +  +  Q M      + +           +          
Sbjct: 130 TNPVLQDLIAKPRS------HEGVNNQRMKSYPGGFMMYAW------AGSTKTMRGRSAP 177

Query: 194 AVFNDE---ASGTPD-IINKSILGFFTELNPNRFWIMTSNTR-RLNGWFYDIFNIPLEDW 248
            +  DE     GTP+    + +          R  I  S    +        F    +  
Sbjct: 178 LIVADEIDGYGGTPEGDEVQLLWQRAATFGDQRLLIEISTPTIKDESRIEAAFLQGDQRH 237

Query: 249 KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287
                         +                     + +
Sbjct: 238 FYVACPHCDHHQRLNWDRVTWDKDEDGHHLPETARYICE 276


>gi|9630534|ref|NP_046964.1| large terminase subunit [Methanobacterium phage psiM2]
 gi|3249594|gb|AAC27048.1| large terminase subunit [Methanobacterium phage psiM2]
          Length = 468

 Score = 37.6 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 48/194 (24%), Gaps = 16/194 (8%)

Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208
              G  AE  EQ               + E   D +     +    +  DE +   +   
Sbjct: 126 WLGGTDAEWNEQKKRWTFPSGAALQFGHMEHEKDRYRY-QGSSYHYIAFDELTEFMETQY 184

Query: 209 KSILGFFTELNP---NRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265
           + +     +            TSN     G  +        +        R    ++   
Sbjct: 185 RFMFRSLRKEVNDHIPLRVRATSNP-GGIGHEWVKTRFITGEKTFIPSTWRENPYLNRDE 243

Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325
           +E  ++    D    R    G +            + E     ++  +     +   D A
Sbjct: 244 YEEALNML--DHVTRRQLKDGDWDVTLQGGVFKREWFE---VIDSPPNGLVMSVRYWDFA 298

Query: 326 G---EGG---DKTV 333
               +G    D TV
Sbjct: 299 ATKPDGANDPDYTV 312


>gi|303275069|ref|XP_003056834.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461186|gb|EEH58479.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 993

 Score = 37.2 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 48/135 (35%), Gaps = 10/135 (7%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            A++A RG GK+     + +         ++   + S   LK   +  V K    L ++ 
Sbjct: 276 VALTAARGRGKSA-AMGIAVAGAIGMGYANVFVTSPSPENLKT-FFQFVLKGFDALGYKE 333

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +   +      +   ++  ++   ++ +  T +    +  +            +  DE
Sbjct: 334 HLDYDIVESSNPAFGRAIVRVNV---TRVHRQTIQYILPQHHE-----RAATAELLVIDE 385

Query: 200 ASGTPDIINKSILGF 214
           A+  P  + + +LG 
Sbjct: 386 AAAIPLPVVQKLLGP 400


>gi|124248178|emb|CAJ87074.1| putative ATPase subunit of terminase [Murine cytomegalovirus
           (strain K181)]
          Length = 374

 Score = 37.2 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 13/40 (32%)

Query: 186 GPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225
                +   +  DEA         +ILGF  +      +I
Sbjct: 1   SIRGQNFNLLIVDEAHFIKKEAFNTILGFLAQNTTKIIFI 40


>gi|9845374|ref|NP_064188.1| pR89 [Murid herpesvirus 2]
 gi|9800303|gb|AAF99177.1|AF232689_74 pR89 [rat cytomegalovirus Maastricht]
          Length = 374

 Score = 37.2 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 13/40 (32%)

Query: 186 GPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225
                +   +  DEA         +ILGF  +      +I
Sbjct: 1   SIRGQNFNLLIVDEAHFIKKEAFNTILGFLAQNTTKIIFI 40


>gi|16799183|ref|NP_469451.1| putative terminase large subunit from bacteriophage A118 [Listeria
           innocua Clip11262]
 gi|16412525|emb|CAC95338.1| putative terminase large subunit from Bacteriophage A118 [Listeria
           innocua Clip11262]
          Length = 443

 Score = 37.2 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 63/226 (27%), Gaps = 20/226 (8%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
                GR   K+++ +  ++      P  +++C+      L  +++ ++   L  +    
Sbjct: 36  IIAKGGRSSMKSSVISLKLVEKKMANPQSNMVCLRKVANTLYKSVYQQIKWALYEMGVAD 95

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND- 198
            F+     +             +  +              +  +   P        F + 
Sbjct: 96  QFKFGKSPMEI-----------IHKEWGTGFYFSGCDDPAKLKSMKIPVGYVSDLWFEEL 144

Query: 199 -EASGTPDI---INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL--EDWKRYQ 252
            E SG  DI    +  I     +      ++  +  R    W  +  +     +D+  + 
Sbjct: 145 AEFSGVTDIDVVEDTFIREDLPQGQEVTIYMSFNPPRNPYEWVNEYVDSKRSDDDYLIHH 204

Query: 253 IDTRT--VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
                     +     + I      D D  R   LG+      N +
Sbjct: 205 TTYLDDEKGFLSKQIIKKIEKYKKNDLDYYRWMYLGEVIGLGDNVY 250


>gi|289706290|ref|ZP_06502652.1| conserved hypothetical protein [Micrococcus luteus SK58]
 gi|289557013|gb|EFD50342.1| conserved hypothetical protein [Micrococcus luteus SK58]
          Length = 577

 Score = 37.2 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 76/290 (26%), Gaps = 34/290 (11%)

Query: 85  GRGIGKTTLNAWM--MLWLISTRPGMSIICIANSETQ-------LKNTLWAEVSKWLSML 135
            R  GK+T+++ +  +L L    PG  +   A S+ Q        K  L    +    + 
Sbjct: 120 PRKNGKSTISSAISGVLLLADQEPGAEVYNAAGSKEQAARVFEDAKRMLSTSKAARSRVE 179

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP-----DTFVGPHNT 190
           P +    +   +       +          S        T   +       +T VG  + 
Sbjct: 180 PLKDVVRVPRTASILRVLSSVAETAHGLNVSGAVVDEVHTLRRKAGLVDALETGVGARDQ 239

Query: 191 HGMAVF--NDEAS-GTPDIINKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIP 244
             +      DEA  GTP     +           +P+ + ++       + +    +   
Sbjct: 240 PLLLYITTADEAEDGTPYDEKHTYTLNVASGIISDPSFYGVVWGAEEGDDPFAESTWAKA 299

Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGII-SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303
              + +                E         +  V +   L               + E
Sbjct: 300 SPGFPK-------SPNRRYMETEAKKARNSPRELAVFKQLALNLRTASTSRWLDIGKWDE 352

Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF-----RRGNIIEHIFDW 348
                +           G D++    D T         R G  +E + D+
Sbjct: 353 LTARPDRARLRGRRAWAGLDLSAT-SDFTAWAVWVESTRPGYQLELLIDY 401


>gi|114567412|ref|YP_754566.1| ATP-dependent RNA helicase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114338347|gb|ABI69195.1| ATP-dependent RNA helicase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 530

 Score = 37.2 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 21/182 (11%), Positives = 44/182 (24%), Gaps = 11/182 (6%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKT      +L  +    G+  + +  +          E+S     +  +        
Sbjct: 51  GTGKTASFGIPILNRVIKGEGLQALVLCPTRELAVQVT-EEISSLSRRMRIQVLAIYGGQ 109

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPD 205
           S+           + +                           +    V  DEA      
Sbjct: 110 SIELQLRSLRRNPEIIVGTPG---------RLMDHMNRGTISLSPLKYVVLDEADEMLDM 160

Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265
                I    ++    R   + S T            +   +    +   RTV  I+  +
Sbjct: 161 GFLPDIQKILSQCPRERQTFLFSATLPDEVRELGTKFMKQPEIILIESPERTVPEIEQYY 220

Query: 266 HE 267
           ++
Sbjct: 221 YQ 222


>gi|332969229|gb|EGK08259.1| UvrD/REP helicase subfamily [Desmospora sp. 8437]
          Length = 811

 Score = 37.2 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/173 (10%), Positives = 46/173 (26%), Gaps = 11/173 (6%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
            H + P  +        D +        +       ++AG G GKTT     +L+L  T 
Sbjct: 82  GHVTDPDLY-EYLCRETDFNREQYEVEHSDPKAHLLVTAGAGTGKTTALIDRLLFLCHTD 140

Query: 106 P----GMSIICIANSET--QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159
           P      +++    +    +++  L   +  +  +     +      +            
Sbjct: 141 PEFSFDSTVMITFTNLAALEMRKRLGKRLMTYFEVTRDPRYLAWLDETRDLFLSTIHSFA 200

Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212
           +++  +      T                    +    DE +     +  S  
Sbjct: 201 KTLLEEVG----TATGLPAGMRLRSFREQKNRWIETCVDEFAEQHPEVFHSFR 249


>gi|158289216|ref|XP_310969.4| AGAP000169-PA [Anopheles gambiae str. PEST]
 gi|157018948|gb|EAA06209.4| AGAP000169-PA [Anopheles gambiae str. PEST]
          Length = 525

 Score = 37.2 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 40/163 (24%), Gaps = 9/163 (5%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
              +    G+GKT + A +M  L    P   +I +A +   +   + A        +P  
Sbjct: 33  NTLVVLPTGLGKTFIAAVVMYNLYRWYPTGKVIFMAPTRPLVAQQIEACARVV--GIPRA 90

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG------PHNTHG 192
              E+                +      +      +           G            
Sbjct: 91  DTAEVTGRQPRSKRATLWRSRRVFFATPQVVLADLQGTDPGGGSGEGGGGGGPLFPANQV 150

Query: 193 MAVFNDEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234
             V  DEA           ++    E NP    +  S T    
Sbjct: 151 RLVVIDEAHKAKGRYAYTDVIRLLAETNPCFRVLALSATPGRT 193


>gi|308804275|ref|XP_003079450.1| Predicted P-loop ATPase fused to an acetyltransferase (ISS)
           [Ostreococcus tauri]
 gi|116057905|emb|CAL54108.1| Predicted P-loop ATPase fused to an acetyltransferase (ISS)
           [Ostreococcus tauri]
          Length = 1028

 Score = 37.2 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 46/135 (34%), Gaps = 10/135 (7%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            A++A RG GK+     + +         +I   + S   LK   +  + K    L ++ 
Sbjct: 293 VALTAARGRGKSA-AMGIAVAGAVEMGYANIFVTSPSPENLKT-FFDFILKGFDALGYKE 350

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +   +      +   ++  ++    +      +T     P        T    +  DE
Sbjct: 351 HLDYDLVESTNPAFGKCIVRINVTRRHR------QTIQYILPQ--HYERATQAELLVIDE 402

Query: 200 ASGTPDIINKSILGF 214
           A+  P    K++LG 
Sbjct: 403 AAAIPLPTVKALLGP 417


>gi|115388463|ref|XP_001211737.1| hypothetical protein ATEG_02559 [Aspergillus terreus NIH2624]
 gi|114195821|gb|EAU37521.1| hypothetical protein ATEG_02559 [Aspergillus terreus NIH2624]
          Length = 1053

 Score = 37.2 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 41/150 (27%), Gaps = 15/150 (10%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q + +             S        ++AGRG GK+      +          +I   +
Sbjct: 261 QAKALLTFVDAIAEKTLRST-----VTLTAGRGRGKSAALGVAIA-AAVAHGYSNIFITS 314

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            S   LK  L+  V K    L +    +   L      +   ++  ++    +      +
Sbjct: 315 PSPENLKT-LFEFVFKGFDALGYLDHVDYTILQSTNPDFNKAIVRVNIHRQHRQTIQYIQ 373

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                               +  DEA+  P
Sbjct: 374 PQDAHVLGQAE--------LLVIDEAAAIP 395


>gi|320037197|gb|EFW19135.1| DNA replication helicase Dna2 [Coccidioides posadasii str. Silveira]
          Length = 1660

 Score = 37.2 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 35/120 (29%), Gaps = 7/120 (5%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK--WLSMLPHRHWFEMQ 144
            G GKTT  A ++        G S++  + + T + N L         +  L        +
Sbjct: 1160 GTGKTTTIAQLI--RAIVAQGKSVLLASYTHTAVDNILLKIRYDGTKILRLGVPAKVHPE 1217

Query: 145  SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                     + +   + +    ++  +   T            ++        DEAS   
Sbjct: 1218 VQQFADLAGFPKKSIEEIKDSIENSQVVATTCLGINH---FIFNSRTFDYCIVDEASQIT 1274


>gi|315604922|ref|ZP_07879980.1| exopolyphosphatase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313461|gb|EFU61520.1| exopolyphosphatase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 1138

 Score = 37.2 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS------IICIANSETQLKNTLWAE 127
                   + AG G GKT   +  +LWL++  P ++      +     +  +L + L A 
Sbjct: 27  ESPRRPLLVVAGAGSGKTETMSMRVLWLLANHPDLTPASILGLTFTRKAAGELGDRLRAR 86

Query: 128 VSKWLSMLPH 137
           +      +PH
Sbjct: 87  IRLLAEAMPH 96


>gi|258592955|emb|CBE69264.1| putative helicase [NC10 bacterium 'Dutch sediment']
          Length = 839

 Score = 37.2 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 26/268 (9%), Positives = 57/268 (21%), Gaps = 31/268 (11%)

Query: 32  VMRFFPWGIKGKPLEHFSQPHRWQL--EFMEA----VDVHCHSNVNNSNPTIFKCAISAG 85
           ++   P G +   ++  S P   Q   +                            +SA 
Sbjct: 10  LLIKMPKGDRPIEIDSSSMPRDAQALIDAFRDRYPFPFDPFQEEAIGLIAEGSSVIVSAP 69

Query: 86  RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145
            G GKT L A   ++         I      +            +W          +++ 
Sbjct: 70  TGAGKT-LIAEFAIFRALAHQH-RIAYTTPLKALSNQKYADFTRQWGEETVGILTGDVKV 127

Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205
               P       + ++     +                           V  DE     +
Sbjct: 128 NPRAPLVVMTTEILRNKFYGGE---------------------CEGLRYVVLDECHYMGN 166

Query: 206 IINKSILGFFTELNPNRFW-IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264
           +   ++        P     +  S T        +         +      R V  +   
Sbjct: 167 VGRGTVWEEIIINCPPEVQLVALSATVSNIREIAEWIGQTHRPIRPIHHPVRPVP-LQYL 225

Query: 265 FHEGIISRYGLDSDVARIEILGQFPQQE 292
             +     +  +    R  +   F  + 
Sbjct: 226 LCDREGQLWPPEPASVRRILHAFFSDRS 253


>gi|303324363|ref|XP_003072169.1| hypothetical protein CPC735_013420 [Coccidioides posadasii C735 delta
            SOWgp]
 gi|240111879|gb|EER30024.1| hypothetical protein CPC735_013420 [Coccidioides posadasii C735 delta
            SOWgp]
          Length = 1630

 Score = 37.2 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 35/120 (29%), Gaps = 7/120 (5%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK--WLSMLPHRHWFEMQ 144
            G GKTT  A ++        G S++  + + T + N L         +  L        +
Sbjct: 1130 GTGKTTTIAQLI--RAIVAQGKSVLLASYTHTAVDNILLKIRYDGTKILRLGVPAKVHPE 1187

Query: 145  SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                     + +   + +    ++  +   T            ++        DEAS   
Sbjct: 1188 VQQFADLAGFPKKSIEEIKDSIENSQVVATTCLGINH---FIFNSRTFDYCIVDEASQIT 1244


>gi|301300149|ref|ZP_07206364.1| DEAD/DEAH box helicase [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852237|gb|EFK79906.1| DEAD/DEAH box helicase [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 426

 Score = 37.2 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 56/242 (23%), Gaps = 30/242 (12%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
           E F++P   Q      +                     A  G GKT   +  +L  I  +
Sbjct: 12  EGFTEPTLIQKYVYPKLAEG------------KNVVGLAPTGSGKTLAYSLPLLEKILPK 59

Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
            G  ++ +A S+                    R W ++  LS+      A +  Q   + 
Sbjct: 60  DGSQLLIMAPSQELAAQLT----------NTIRPWAKLLDLSVIGLLGGANVKRQIEKLK 109

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRF 223
                +                      ++  DEA      +     +    +       
Sbjct: 110 KHPEVVIGTPGRLLNLINLKKLKLHKIESIVIDEADEMLGDEDSLNDVREIVSHCPSEAQ 169

Query: 224 WIMTSNTRRLN-GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI 282
               S T        +  F + +E     + D              +I            
Sbjct: 170 ISFFSATEAPILSELHRWFGVDVEKIDVRKED-----NTRGEVTNYMIETPTRKRTEMLR 224

Query: 283 EI 284
            +
Sbjct: 225 RL 226


>gi|15596242|ref|NP_249736.1| ATP-dependent DNA helicase DinG [Pseudomonas aeruginosa PAO1]
 gi|9946958|gb|AAG04434.1|AE004536_13 hypothetical protein PA1045 [Pseudomonas aeruginosa PAO1]
          Length = 714

 Score = 37.2 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/185 (11%), Positives = 46/185 (24%), Gaps = 19/185 (10%)

Query: 51  PHRWQLEFMEAVDVHC----HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
           P   Q   +  V             +        A+ AG G GKT   +   +   +   
Sbjct: 25  PRYGQRLMIAEVAKALGVIKEDEEGHREGEPAVVAVEAGTGTGKTVAYSLAAI-ACAKAS 83

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE----------MQSLSLHPSGWYAE 156
           G  ++    +    +  +  ++   L        F           +  L +      A+
Sbjct: 84  GKRLVIATATVALQEQIVHKDLPDLLRNSGLAFSFALAKGRGRYLCLSKLDVLLQEGQAQ 143

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT 216
                +  D         T S+                 ++ +    P+ I+ +     T
Sbjct: 144 SATAQLFADDGFNIDVDETSSKLFNQMIERLAGNR----WDGDRDSWPEAIDDAHWAQLT 199

Query: 217 ELNPN 221
             +  
Sbjct: 200 TDHSQ 204


>gi|240948445|ref|ZP_04752821.1| hypothetical protein AM305_06166 [Actinobacillus minor NM305]
 gi|240297186|gb|EER47748.1| hypothetical protein AM305_06166 [Actinobacillus minor NM305]
          Length = 538

 Score = 37.2 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 17/105 (16%)

Query: 23  ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLE--FMEAVDVHCHSNVNNSNPTIFKC 80
           +    F+ FV  +FP         +   PH+ QL     + +     S     +      
Sbjct: 44  DVGSGFEFFVSNYFP--------HYVRSPHKSQLHHYLFKRLPEIIQSPKKCLD------ 89

Query: 81  AISAGRGIGKTTLNAWM-MLWLISTRPGMSIICIANSETQLKNTL 124
           AI+A RG  K+T+ + + +LW + T      + + +S  Q    L
Sbjct: 90  AIAAPRGEAKSTIVSQLFVLWCLVTNRKKYALIVMDSIDQAYPML 134


>gi|294649116|ref|ZP_06726558.1| exodeoxyribonuclease V alpha subunit [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292824999|gb|EFF83760.1| exodeoxyribonuclease V alpha subunit [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 601

 Score = 37.2 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 39/157 (24%), Gaps = 23/157 (14%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKC-------AISAGRGIGKTTLNAWMMLWLISTRPG 107
           Q+     +  +     +       K         I+ G G GKT   A ++  L    P 
Sbjct: 130 QMTPAIDISEYESLLEDEFQQAALKMVLQQWLSIITGGPGTGKTYTLARIIAALNQMIPD 189

Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
           + I   A +    +                     +Q+    P    + L+   +   S 
Sbjct: 190 IRIAMAAPTGKAAQRM----------------QEALQNSFNDPKLIASGLVTDELRNQST 233

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                       +   F          +  DEAS   
Sbjct: 234 QTLHRLLGMGNRQIPRFNAKQPLPYDVIVVDEASMLD 270


>gi|298208398|ref|YP_003716577.1| arginine/ornithine transport system ATPase [Croceibacter atlanticus
           HTCC2559]
 gi|83848319|gb|EAP86189.1| arginine/ornithine transport system ATPase [Croceibacter atlanticus
           HTCC2559]
          Length = 359

 Score = 37.2 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 29/267 (10%), Positives = 68/267 (25%), Gaps = 9/267 (3%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q    +           +      +  I+   G+GK+T        LIS    ++++ + 
Sbjct: 66  QQSTHQEKAKQLIEACLSHVKPSIRIGITGVPGVGKSTFIEAFGTSLISKGYKVAVLAVD 125

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            S      ++  + ++   ++   + F   S S    G  A    +S+ +          
Sbjct: 126 PSSGVTHGSILGDKTRMEDLVKEDNAFIRPSPSGDSLGGVARKTRESIILCEAAGFDVIL 185

Query: 175 TYSEERPDTFVGPHNTHGMAVFN------DEASGTPDIINKSILGFFTELNPNRFWIMTS 228
             +     +    H+     +        DE  G    I +                   
Sbjct: 186 IETVGVGQSETTVHSMTDFFLLLKLAGAGDELQGIKRGIIEMADAIVINKADGENIKAAK 245

Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
             +        ++      W   Q        +       +           +     +F
Sbjct: 246 QAKSEFRKALHLYPEKESQW---QPKVLLASALKQEGISEVWEMIEDYKTSTKASSYFEF 302

Query: 289 PQQEVNNFIPHNYIEEAMSREAIDDLY 315
            +QE N F     I++ +  +      
Sbjct: 303 RRQEQNKFWLLQTIQDRLKADFFSKPN 329


>gi|294667150|ref|ZP_06732373.1| hypothetical protein XAUC_31250 [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603049|gb|EFF46477.1| hypothetical protein XAUC_31250 [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 573

 Score = 37.2 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 35/254 (13%), Positives = 60/254 (23%), Gaps = 35/254 (13%)

Query: 80  CAIS-AGRGIGKTTLNAWMMLWLISTRP---GMSIICIANSETQLKNTLWAEVSKWLSML 135
            A+   GR  G T   A       ++     G +I   A++    +      +       
Sbjct: 54  VAVCEKGRRTGITFAQAMADTITAASSKEAGGRNIWYAADT----REKGLEYIGYVAKFA 109

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
           P     +   +  H                 +    +    +          H   G  V
Sbjct: 110 PIVARGQATRIEQHIFVDQQPDGSSRNIQAFRVRFASGFKITALS-SRPENIHGLQGD-V 167

Query: 196 FNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL-------- 245
             DEA+   +     +S           R W      +                      
Sbjct: 168 DLDEAALHKNVAKTLESATALLIWGGRIRVWATHRGKKNAFNQLVQDVRAGRYGKRAGVI 227

Query: 246 -------------EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292
                        E     +    T       ++ GI + YG      R E+    P+  
Sbjct: 228 RIAFDDAVANGLYERICAMRGTAPT-PEGKKDWYTGIRAAYGPRKAAMREELD-VVPRDG 285

Query: 293 VNNFIPHNYIEEAM 306
             + IP  +IE AM
Sbjct: 286 DGSAIPSVWIERAM 299


>gi|162453593|ref|YP_001615960.1| protein kinase [Sorangium cellulosum 'So ce 56']
 gi|161164175|emb|CAN95480.1| Protein kinase [Sorangium cellulosum 'So ce 56']
          Length = 1297

 Score = 37.2 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 56/192 (29%), Gaps = 23/192 (11%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
           + + A+        + + P +F     AG  +GKT L A          P + ++     
Sbjct: 449 DVLSALAASATDAFDGTCPGLFTLIGDAG--LGKTRLAAEAASIAGVPVPDVRVVAARAL 506

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
                  +    ++ +  L        +     P  +  E L +++G  +         +
Sbjct: 507 HP-----IHGGAAQAVRALLRVALDAPRESPGDPRQFCVERLGETLGGATWEAVAAALGW 561

Query: 177 SEERPDTFVGPHNTHGMA----------------VFNDEASGTPDIINKSILGFFTELNP 220
           +  R     G      M                 V  D+A    D++  ++     +   
Sbjct: 562 AGPRGGRLSGEARNGLMLALAEALRRGARRGPLAVILDDADQADDVLLDALEYATLDGEG 621

Query: 221 NRFWIMTSNTRR 232
              W++ +   R
Sbjct: 622 TPLWVVVTARPR 633


>gi|288573981|ref|ZP_06392338.1| UvrD/REP helicase [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569722|gb|EFC91279.1| UvrD/REP helicase [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 1160

 Score = 37.2 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 3/99 (3%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
             +SAG G GKT   AW  +W ++T    +   +  + T   +    E+++ + +L    
Sbjct: 33  VVVSAGAGTGKTWTLAWRFVWAVATGRARAGEILTLTFT---DKAATEMAERIRLLMEGL 89

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
             + + L    +     L        S  ++ + R   E
Sbjct: 90  LPKTKELPTVAAALREGLESLEDSYISTIHSFSSRVIRE 128


>gi|153000501|ref|YP_001366182.1| EcoEI R domain-containing protein [Shewanella baltica OS185]
 gi|151365119|gb|ABS08119.1| EcoEI R domain protein [Shewanella baltica OS185]
          Length = 825

 Score = 37.2 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 52/190 (27%), Gaps = 32/190 (16%)

Query: 49  SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST-RPG 107
             P  +QL+ +        S  +       +  +    G GKT   A+ ++W +   R  
Sbjct: 180 KHPRYYQLQAINKTVEAISSGKD-------RVLLVMATGTGKTY-TAFQIIWRLWKSRAK 231

Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
             I+ +A+     +N L  +                       S             +  
Sbjct: 232 KRILFLAD-----RNILVDQTRI------------NDFQPFGTSMTKITGRTVDPAYEIH 274

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA---SGTPDIINKSILGFFTELNPNRFW 224
                  T  +E    F          +  DE    S + D   + IL +F+        
Sbjct: 275 LALYQALTGPDESQKAFKQVAPDFFDLIIIDECHRGSASDDSAWREILEYFSSAAQVGL- 333

Query: 225 IMTSNTRRLN 234
             T+  +  +
Sbjct: 334 --TATPKETD 341


>gi|76788026|ref|YP_329369.1| prophage LambdaSa04, terminase, large subunit [Streptococcus
           agalactiae A909]
 gi|76563083|gb|ABA45667.1| prophage LambdaSa04, terminase, large subunit [Streptococcus
           agalactiae A909]
          Length = 530

 Score = 37.2 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 39/316 (12%), Positives = 79/316 (25%), Gaps = 53/316 (16%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ + +  +      + N    T +   I   +  GK+ L A + L+L+          
Sbjct: 48  PWQEQIVRDLFGIVKEDGNRQFLTAY---IEIPKKNGKSELAAAIALYLLYADNEA---- 100

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            A       +   A +            F++    +  S    +  +             
Sbjct: 101 SAEVYGAACDRNQASIV-----------FDVAKQMVLMSRPLEKRSKIMGATKRIVNYSN 149

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT-- 230
              Y     +T    H  +   +  DE    P+     +L   +     +       T  
Sbjct: 150 AGFYQVLSAETG-TKHGLNVSGLVFDEIHAQPNRHLYDVLTKGSGDAREQPLFFIITTAG 208

Query: 231 RRLNGWFYDIFNIP----------------------LEDW----KRYQIDTRTVEGIDSG 264
              N   Y++                           +DW       + +      I   
Sbjct: 209 TDKNSICYELHTKALDILKGRKKDTSFYPVVYGLSDADDWNDEANWLKANPSLGHTIGID 268

Query: 265 FHEGIISRYGLDS---DVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLIM 320
                  +   +    +V +   L  +    V  +IP +   +  S  +           
Sbjct: 269 RVREAYQQALDNPAEENVFKQLRLNMWTSSSV-AWIPEHVYAKGNSPIDYEALKGRDCYA 327

Query: 321 GCDIAGEGGDKTVVVF 336
           G D++    D T  V 
Sbjct: 328 GLDLSST-SDITAFVL 342


>gi|329112570|ref|NP_001179731.2| DNA2-like helicase [Bos taurus]
          Length = 1061

 Score = 37.2 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 25/195 (12%), Positives = 57/195 (29%), Gaps = 16/195 (8%)

Query: 13  QELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNN 72
           Q+L ++++       F +++    P   K          ++ Q + M+ V          
Sbjct: 589 QKLRDLIIDFREP-QFISYLSSVLPHEAKDTVACILKGLNKPQRQAMKKV---------- 637

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
                +   +    G GKTT    ++  L +   G S++  + + + + N L       +
Sbjct: 638 LLSKDYTLIVGMP-GTGKTTTICTLVRILYAC--GFSVLLTSYTHSAVDNILLKLAKFKI 694

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQ--SMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
             L      ++       +       +   S+ +  + Y       +             
Sbjct: 695 GFLRLGQIQKVHPDIQKFTEEEICRSKSIKSLALLEELYNSQLIVATTCMGINHPIFSRK 754

Query: 191 HGMAVFNDEASGTPD 205
                  DEAS    
Sbjct: 755 TFDFCIVDEASQISQ 769


>gi|322708209|gb|EFY99786.1| Putative DNA helicase ino-80 [Metarhizium anisopliae ARSEF 23]
          Length = 1927

 Score = 37.2 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 23/188 (12%), Positives = 43/188 (22%), Gaps = 17/188 (9%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G+GKT  +  +M +L           +    + L N    E++K++       ++     
Sbjct: 1098 GLGKTVQSISVMAYLAEKHDIWGPFLVVAPASTLHN-WQQEIAKFVPEFKILPYWGSAPD 1156

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                  +      +            C T  +                +  DEA      
Sbjct: 1157 RKVLRKF---WDRKHSTYRKDAAFHVCVTSYQLVVSDVAYFQKMRWQYMILDEAQAIKSS 1213

Query: 207  INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW---KRYQIDTRTVEGIDS 263
               S        +     ++T            I N   E W                 S
Sbjct: 1214 Q-SSRWKSLLGFHCRNRLLLTGTP---------IQNNMQELWALLHFIMPSLFDSHDEFS 1263

Query: 264  GFHEGIIS 271
             +    I 
Sbjct: 1264 EWFSKDIE 1271


>gi|297491472|ref|XP_002698948.1| PREDICTED: DNA replication helicase 2 homolog (yeast) [Bos taurus]
 gi|296472072|gb|DAA14187.1| DNA replication helicase 2 homolog [Bos taurus]
          Length = 1137

 Score = 37.2 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 25/195 (12%), Positives = 57/195 (29%), Gaps = 16/195 (8%)

Query: 13  QELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNN 72
           Q+L ++++       F +++    P   K          ++ Q + M+ V          
Sbjct: 665 QKLRDLIIDFREP-QFISYLSSVLPHEAKDTVACILKGLNKPQRQAMKKV---------- 713

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132
                +   +    G GKTT    ++  L +   G S++  + + + + N L       +
Sbjct: 714 LLSKDYTLIVGMP-GTGKTTTICTLVRILYAC--GFSVLLTSYTHSAVDNILLKLAKFKI 770

Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQ--SMGIDSKHYTITCRTYSEERPDTFVGPHNT 190
             L      ++       +       +   S+ +  + Y       +             
Sbjct: 771 GFLRLGQIQKVHPDIQKFTEEEICRSKSIKSLALLEELYNSQLIVATTCMGINHPIFSRK 830

Query: 191 HGMAVFNDEASGTPD 205
                  DEAS    
Sbjct: 831 TFDFCIVDEASQISQ 845


>gi|282599667|ref|ZP_05971423.2| terminase, ATPase subunit [Providencia rustigianii DSM 4541]
 gi|282568162|gb|EFB73697.1| terminase, ATPase subunit [Providencia rustigianii DSM 4541]
          Length = 574

 Score = 37.2 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 67/303 (22%), Gaps = 22/303 (7%)

Query: 44  PLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS 103
           P  HF+     QL+ +    +  +        +     I   R IG T   A   L    
Sbjct: 107 PKNHFTPEQIEQLKTLVLGTLFEYQRQWWDERSQRNRFILKSRQIGATWYFAREALLTAL 166

Query: 104 TRPGMSIICIANSET--QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161
                 I   A+     Q K  +     +    L       + + ++      A    QS
Sbjct: 167 ETGNNQIFLSASRAQAFQFKRFIQLLARQVGVELKGGDEIMLSNGAILFFLGTAAATAQS 226

Query: 162 MGID---SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218
              D    + + ++      +                     S       +   G F   
Sbjct: 227 YTGDLYFDEVFWVSRFLELRKVASAMATQSGLRRTY--FSTPSSEDHEAYEFWTGDFYNK 284

Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278
                          +             W++       +    +      I       D
Sbjct: 285 GKPEKERKII--ELSHKVLKFGHYSGDSMWRQIVNIHDAIARGLNRVILEEIKDEN-PPD 341

Query: 279 VARIEILGQFPQQEV-----NNFI--PHNYIEEAMSREAIDDL-----YAPLIMGCDIAG 326
             R     +F +        +  I    +     +  +            P+ +G D  G
Sbjct: 342 DFRNLYECEFVKTGERAFSYDALINCGVDGYNSHIWSDWKPYAPRPLGNRPVWVGADPTG 401

Query: 327 EGG 329
            G 
Sbjct: 402 TGD 404


>gi|332829931|gb|EGK02559.1| hypothetical protein HMPREF9455_00809 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 662

 Score = 37.2 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 1/74 (1%)

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
            ++ +     +N N          +  G G GKT     ++ ++    P   I+CI ++ 
Sbjct: 5   ALDKIREIIDNNQNPKK-EFKNFVLQGGAGSGKTESLKEVISYIAEKYPKKKIVCITHTN 63

Query: 118 TQLKNTLWAEVSKW 131
             +   +    +K+
Sbjct: 64  VAVDEIIARVGNKY 77


>gi|322700261|gb|EFY92017.1| Putative DNA helicase ino-80 [Metarhizium acridum CQMa 102]
          Length = 1925

 Score = 37.2 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 23/188 (12%), Positives = 43/188 (22%), Gaps = 17/188 (9%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G+GKT  +  +M +L           +    + L N    E++K++       ++     
Sbjct: 1095 GLGKTVQSISVMAYLAEKHDIWGPFLVVAPASTLHN-WQQEIAKFVPEFKILPYWGSAPD 1153

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
                  +      +            C T  +                +  DEA      
Sbjct: 1154 RKVLRKF---WDRKHSTYRKDAAFHVCVTSYQLVVSDVAYFQKMRWQYMILDEAQAIKSS 1210

Query: 207  INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW---KRYQIDTRTVEGIDS 263
               S        +     ++T            I N   E W                 S
Sbjct: 1211 Q-SSRWKSLLGFHCRNRLLLTGTP---------IQNNMQELWALLHFIMPSLFDSHDEFS 1260

Query: 264  GFHEGIIS 271
             +    I 
Sbjct: 1261 EWFSKDIE 1268


>gi|296166195|ref|ZP_06848636.1| type III restriction enzyme [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295898443|gb|EFG78008.1| type III restriction enzyme [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 705

 Score = 37.2 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 34/161 (21%), Gaps = 18/161 (11%)

Query: 67  HSNVNNSNPTIFKCAISA-----GRG-------IGKT--TLNAWMMLWLISTRPGMSIIC 112
                       K AI A     GRG        GKT   L A   LW +       ++ 
Sbjct: 249 RRPPTLKLRDYQKDAIRAWWKENGRGIWEMATGTGKTVTALAAVEALWGVQQNKDSLLVV 308

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
           +      L     AE                   S       A +   S         I 
Sbjct: 309 VTVPYKHLAEQWAAEA----RKFGANPILAYDDASRWIPQMEAAVAALSPTNRKLILVIA 364

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213
                            +    +  DEA        ++ L 
Sbjct: 365 VNRTFCGSKFIDRLRAASCTKMLICDEAHTAGSKEMRAALP 405


>gi|90962260|ref|YP_536176.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118]
 gi|90821454|gb|ABE00093.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118]
          Length = 426

 Score = 37.2 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 56/242 (23%), Gaps = 30/242 (12%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
           E F++P   Q      +                     A  G GKT   +  +L  I  +
Sbjct: 12  EGFTEPTLIQKYVYPKLAEG------------KNVVGLAPTGSGKTLAYSLPLLEKILPK 59

Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
            G  ++ +A S+                    R W ++  LS+      A +  Q   + 
Sbjct: 60  DGSQLLIMAPSQELAAQLT----------NTIRPWAKLLDLSVIGLLGGANVKRQIEKLK 109

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRF 223
                +                      ++  DEA      +     +    +       
Sbjct: 110 KHPEVVIGTPGRLLNLINLKKLKLHKIESIVIDEADEMLGDEDSLNDVREIVSHCPSEAQ 169

Query: 224 WIMTSNTRRLN-GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI 282
               S T        +  F + +E     + D              +I            
Sbjct: 170 ISFFSATEAPILSELHRWFGVDVEKIDVRKED-----NTRGEVTNYMIEAPTRKRTEMLR 224

Query: 283 EI 284
            +
Sbjct: 225 RL 226


>gi|226951859|ref|ZP_03822323.1| exonuclease V alpha subunit [Acinetobacter sp. ATCC 27244]
 gi|226837399|gb|EEH69782.1| exonuclease V alpha subunit [Acinetobacter sp. ATCC 27244]
          Length = 601

 Score = 37.2 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 44/173 (25%), Gaps = 23/173 (13%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKC-------AISAGRGIGKTTLNAWMMLWLISTRPG 107
           Q+  +  +  +     +       K         I+ G G GKT   A ++  L    P 
Sbjct: 130 QMTPVIDISEYESLLEDEFQQAALKMVLQQWVSIITGGPGTGKTYTLARIIAALNQMIPD 189

Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167
           + I   A +    +                     +Q+    P    + L+   +   S 
Sbjct: 190 IRIAMAAPTGKAAQRM----------------QEALQNSFNDPKLIASGLVTDELRNQST 233

Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220
                       +   F          +  DEAS     +  ++     +   
Sbjct: 234 QTLHRLLGMGNRQIPRFNVKQPLPYDVIVVDEASMLDLNLATALFEAVPDSCR 286


>gi|205353381|ref|YP_002227182.1| multidrug transporter membrane component/ATP-binding protein
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|207857683|ref|YP_002244334.1| multidrug transporter membrane protein/ATP-binding protein
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|205273162|emb|CAR38123.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|206709486|emb|CAR33830.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|326628472|gb|EGE34815.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 9]
          Length = 547

 Score = 37.2 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 22/200 (11%)

Query: 47  HFSQPH---RWQLEFMEAVDVHCHSNVNNSNPTIFKC------AISAGRGIGKTTLNAWM 97
            F QP     W+   +  V  H   N  +  P            +  G G GK+TL   M
Sbjct: 310 DFPQPKAFPDWKTLELRNVVFHYQDNAFSVGPINLTIHRGELLFLIGGNGSGKSTLA--M 367

Query: 98  MLWLISTRPGMSII----CIANSETQLKNTLWAEV--SKWLSMLPHRHWFEMQSLSLHPS 151
           +L  +      +I+     IA  + +    L++ V    WL         +  + +L   
Sbjct: 368 LLTGLYQPQSGTILLDGQPIAAGQPEDYRKLFSAVFTDVWLFDRLLGPQGKPANPALVEK 427

Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--- 208
                 +   + ++         +  +++    +         +  DE +   D      
Sbjct: 428 WLEHLKMTHKLELNDGRILNLKLSKGQKKRIALLLALAEERDIILLDEWAADQDPHFRRE 487

Query: 209 --KSILGFFTELNPNRFWIM 226
             + +L    E+    F I 
Sbjct: 488 FYQVLLPLMQEMGKTIFAIS 507


>gi|168818011|ref|ZP_02830011.1| ABC transporter ATP-binding protein YojI [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205344883|gb|EDZ31647.1| ABC transporter ATP-binding protein YojI [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|320086700|emb|CBY96471.1| Lipid A export ATP-binding/permease protein msbA [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
          Length = 547

 Score = 37.2 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 22/200 (11%)

Query: 47  HFSQPH---RWQLEFMEAVDVHCHSNVNNSNPTIFKC------AISAGRGIGKTTLNAWM 97
            F QP     W+   +  V  H   N  +  P            +  G G GK+TL   M
Sbjct: 310 DFPQPKAFPDWKTLELRNVVFHYQDNAFSVGPINLTIHRGELLFLIGGNGSGKSTLA--M 367

Query: 98  MLWLISTRPGMSII----CIANSETQLKNTLWAEV--SKWLSMLPHRHWFEMQSLSLHPS 151
           +L  +      +I+     IA  + +    L++ V    WL         +  + +L   
Sbjct: 368 LLTGLYQPQSGTILLDGQPIAAGQPEDYRKLFSAVFTDVWLFDRLLGPQGKPANPALVEK 427

Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--- 208
                 +   + ++         +  +++    +         +  DE +   D      
Sbjct: 428 WLEHLKMTHKLELNDGRILNLKLSKGQKKRIALLLALAEERDIILLDEWAADQDPHFRRE 487

Query: 209 --KSILGFFTELNPNRFWIM 226
             + +L    E+    F I 
Sbjct: 488 FYQVLLPLMQEMGKTIFAIS 507


>gi|168261726|ref|ZP_02683699.1| ABC transporter ATP-binding protein YojI [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|205349663|gb|EDZ36294.1| ABC transporter ATP-binding protein YojI [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
          Length = 547

 Score = 37.2 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 22/200 (11%)

Query: 47  HFSQPH---RWQLEFMEAVDVHCHSNVNNSNPTIFKC------AISAGRGIGKTTLNAWM 97
            F QP     W+   +  V  H   N  +  P            +  G G GK+TL   M
Sbjct: 310 DFPQPKAFPDWKTLELRNVVFHYQDNAFSVGPINLTIHRGELLFLIGGNGSGKSTLA--M 367

Query: 98  MLWLISTRPGMSII----CIANSETQLKNTLWAEV--SKWLSMLPHRHWFEMQSLSLHPS 151
           +L  +      +I+     IA  + +    L++ V    WL         +  + +L   
Sbjct: 368 LLTGLYQPQSGTILLDGQPIAAGQPEDYRKLFSAVFTDVWLFDRLLGPQGKPANPALVEK 427

Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--- 208
                 +   + ++         +  +++    +         +  DE +   D      
Sbjct: 428 WLEHLKMTHKLELNDGRILNLKLSKGQKKRIALLLALAEERDIILLDEWAADQDPHFRRE 487

Query: 209 --KSILGFFTELNPNRFWIM 226
             + +L    E+    F I 
Sbjct: 488 FYQVLLPLMQEMGKTIFAIS 507


>gi|194445903|ref|YP_002041525.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194404566|gb|ACF64788.1| ABC transporter ATP-binding protein YojI [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
          Length = 547

 Score = 37.2 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 22/200 (11%)

Query: 47  HFSQPH---RWQLEFMEAVDVHCHSNVNNSNPTIFKC------AISAGRGIGKTTLNAWM 97
            F QP     W+   +  V  H   N  +  P            +  G G GK+TL   M
Sbjct: 310 DFPQPKAFPDWKTLELRNVVFHYQDNAFSVGPINLTIHRGELLFLIGGNGSGKSTLA--M 367

Query: 98  MLWLISTRPGMSII----CIANSETQLKNTLWAEV--SKWLSMLPHRHWFEMQSLSLHPS 151
           +L  +      +I+     IA  + +    L++ V    WL         +  + +L   
Sbjct: 368 LLTGLYQPQSGTILLDGQPIAAGQPEDYRKLFSAVFTDVWLFDRLLGPQGKPANPALVEK 427

Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--- 208
                 +   + ++         +  +++    +         +  DE +   D      
Sbjct: 428 WLEHLKMTHKLELNDGRILNLKLSKGQKKRIALLLALAEERDIILLDEWAADQDPHFRRE 487

Query: 209 --KSILGFFTELNPNRFWIM 226
             + +L    E+    F I 
Sbjct: 488 FYQVLLPLMQEMGKTIFAIS 507


>gi|168242376|ref|ZP_02667308.1| ABC transporter ATP-binding protein YojI [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|194447919|ref|YP_002046318.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194406223|gb|ACF66442.1| ABC transporter ATP-binding protein YojI [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|205338321|gb|EDZ25085.1| ABC transporter ATP-binding protein YojI [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
          Length = 547

 Score = 37.2 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 22/200 (11%)

Query: 47  HFSQPH---RWQLEFMEAVDVHCHSNVNNSNPTIFKC------AISAGRGIGKTTLNAWM 97
            F QP     W+   +  V  H   N  +  P            +  G G GK+TL   M
Sbjct: 310 DFPQPKAFPDWKTLELRNVVFHYQDNAFSVGPINLTIHRGELLFLIGGNGSGKSTLA--M 367

Query: 98  MLWLISTRPGMSII----CIANSETQLKNTLWAEV--SKWLSMLPHRHWFEMQSLSLHPS 151
           +L  +      +I+     IA  + +    L++ V    WL         +  + +L   
Sbjct: 368 LLTGLYQPQSGTILLDGQPIAAGQPEDYRKLFSAVFTDVWLFDRLLGPQGKPANPALVEK 427

Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--- 208
                 +   + ++         +  +++    +         +  DE +   D      
Sbjct: 428 WLEHLKMTHKLELNDGRILNLKLSKGQKKRIALLLALAEERDIILLDEWAADQDPHFRRE 487

Query: 209 --KSILGFFTELNPNRFWIM 226
             + +L    E+    F I 
Sbjct: 488 FYQVLLPLMQEMGKTIFAIS 507


>gi|204929126|ref|ZP_03220269.1| ABC transporter ATP-binding protein YojI [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|204321670|gb|EDZ06869.1| ABC transporter ATP-binding protein YojI [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|322617016|gb|EFY13922.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322617678|gb|EFY14577.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322624692|gb|EFY21521.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322630241|gb|EFY27011.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322634422|gb|EFY31155.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322639132|gb|EFY35824.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322640129|gb|EFY36795.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 531954]
 gi|322645783|gb|EFY42307.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322651558|gb|EFY47933.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. OH_2009072675]
 gi|322656119|gb|EFY52418.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322659471|gb|EFY55718.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322665933|gb|EFY62116.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322669829|gb|EFY65970.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322673814|gb|EFY69911.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322678572|gb|EFY74628.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|322683632|gb|EFY79646.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322687708|gb|EFY83678.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323196195|gb|EFZ81352.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323198363|gb|EFZ83465.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323204199|gb|EFZ89210.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
 gi|323208585|gb|EFZ93524.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323212352|gb|EFZ97175.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
 gi|323218242|gb|EGA02952.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323223000|gb|EGA07349.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323227435|gb|EGA11600.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323232237|gb|EGA16340.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323235730|gb|EGA19814.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323241110|gb|EGA25146.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323244852|gb|EGA28854.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323248563|gb|EGA32494.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323251583|gb|EGA35451.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323255015|gb|EGA38805.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323263090|gb|EGA46636.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323268150|gb|EGA51627.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323270757|gb|EGA54195.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
          Length = 547

 Score = 37.2 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 22/200 (11%)

Query: 47  HFSQPH---RWQLEFMEAVDVHCHSNVNNSNPTIFKC------AISAGRGIGKTTLNAWM 97
            F QP     W+   +  V  H   N  +  P            +  G G GK+TL   M
Sbjct: 310 DFPQPKAFPDWKTLELRNVVFHYQDNAFSVGPINLTIHRGELLFLIGGNGSGKSTLA--M 367

Query: 98  MLWLISTRPGMSII----CIANSETQLKNTLWAEV--SKWLSMLPHRHWFEMQSLSLHPS 151
           +L  +      +I+     IA  + +    L++ V    WL         +  + +L   
Sbjct: 368 LLTGLYQPQSGTILLDGQPIAAGQPEDYRKLFSAVFTDVWLFDRLLGPQGKPANPALVEK 427

Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--- 208
                 +   + ++         +  +++    +         +  DE +   D      
Sbjct: 428 WLEHLKMTHKLELNDGRILNLKLSKGQKKRIALLLALAEERDIILLDEWAADQDPHFRRE 487

Query: 209 --KSILGFFTELNPNRFWIM 226
             + +L    E+    F I 
Sbjct: 488 FYQVLLPLMQEMGKTIFAIS 507


>gi|168229624|ref|ZP_02654682.1| ABC transporter ATP-binding protein YojI [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|168236438|ref|ZP_02661496.1| ABC transporter ATP-binding protein YojI [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|194472352|ref|ZP_03078336.1| ABC transporter ATP-binding protein YojI [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194736104|ref|YP_002115336.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197264984|ref|ZP_03165058.1| ABC transporter ATP-binding protein YojI [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|238913915|ref|ZP_04657752.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Tennessee
           str. CDC07-0191]
 gi|194458716|gb|EDX47555.1| ABC transporter ATP-binding protein YojI [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194711606|gb|ACF90827.1| ABC transporter ATP-binding protein YojI [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197243239|gb|EDY25859.1| ABC transporter ATP-binding protein YojI [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197290460|gb|EDY29815.1| ABC transporter ATP-binding protein YojI [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|205335739|gb|EDZ22503.1| ABC transporter ATP-binding protein YojI [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
          Length = 547

 Score = 37.2 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 22/200 (11%)

Query: 47  HFSQPH---RWQLEFMEAVDVHCHSNVNNSNPTIFKC------AISAGRGIGKTTLNAWM 97
            F QP     W+   +  V  H   N  +  P            +  G G GK+TL   M
Sbjct: 310 DFPQPKAFPDWKTLELRNVVFHYQDNAFSVGPINLTIHRGELLFLIGGNGSGKSTLA--M 367

Query: 98  MLWLISTRPGMSII----CIANSETQLKNTLWAEV--SKWLSMLPHRHWFEMQSLSLHPS 151
           +L  +      +I+     IA  + +    L++ V    WL         +  + +L   
Sbjct: 368 LLTGLYQPQSGTILLDGQPIAAGQPEDYRKLFSAVFTDVWLFDRLLGPQGKPANPALVEK 427

Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--- 208
                 +   + ++         +  +++    +         +  DE +   D      
Sbjct: 428 WLEHLKMTHKLELNDGRILNLKLSKGQKKRIALLLALAEERDIILLDEWAADQDPHFRRE 487

Query: 209 --KSILGFFTELNPNRFWIM 226
             + +L    E+    F I 
Sbjct: 488 FYQVLLPLMQEMGKTIFAIS 507


>gi|161613020|ref|YP_001586985.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Paratyphi B
           str. SPB7]
 gi|167549746|ref|ZP_02343505.1| ABC transporter ATP-binding protein YojI [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|168466043|ref|ZP_02699913.1| ABC transporter ATP-binding protein YojI [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197251544|ref|YP_002147220.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|198243297|ref|YP_002216333.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|161362384|gb|ABX66152.1| hypothetical protein SPAB_00727 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|195631497|gb|EDX50057.1| ABC transporter ATP-binding protein YojI [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197215247|gb|ACH52644.1| ABC transporter ATP-binding protein YojI [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197937813|gb|ACH75146.1| ABC transporter ATP-binding protein YojI [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|205325207|gb|EDZ13046.1| ABC transporter ATP-binding protein YojI [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|326624083|gb|EGE30428.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Dublin str.
           3246]
          Length = 547

 Score = 37.2 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 22/200 (11%)

Query: 47  HFSQPH---RWQLEFMEAVDVHCHSNVNNSNPTIFKC------AISAGRGIGKTTLNAWM 97
            F QP     W+   +  V  H   N  +  P            +  G G GK+TL   M
Sbjct: 310 DFPQPKAFPDWKTLELRNVVFHYQDNAFSVGPINLTIHRGELLFLIGGNGSGKSTLA--M 367

Query: 98  MLWLISTRPGMSII----CIANSETQLKNTLWAEV--SKWLSMLPHRHWFEMQSLSLHPS 151
           +L  +      +I+     IA  + +    L++ V    WL         +  + +L   
Sbjct: 368 LLTGLYQPQSGTILLDGQPIAAGQPEDYRKLFSAVFTDVWLFDRLLGPQGKPANPALVEK 427

Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--- 208
                 +   + ++         +  +++    +         +  DE +   D      
Sbjct: 428 WLEHLKMTHKLELNDGRILNLKLSKGQKKRIALLLALAEERDIILLDEWAADQDPHFRRE 487

Query: 209 --KSILGFFTELNPNRFWIM 226
             + +L    E+    F I 
Sbjct: 488 FYQVLLPLMQEMGKTIFAIS 507


>gi|62180837|ref|YP_217254.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|224583250|ref|YP_002637048.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|62128470|gb|AAX66173.1| putative ABC-type multidrug/protein/lipid transport system, ATPase
           component [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|224467777|gb|ACN45607.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|322715313|gb|EFZ06884.1| ABC transporter ATP-binding protein YojI [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 547

 Score = 37.2 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 22/200 (11%)

Query: 47  HFSQPH---RWQLEFMEAVDVHCHSNVNNSNPTIFKC------AISAGRGIGKTTLNAWM 97
            F QP     W+   +  V  H   N  +  P            +  G G GK+TL   M
Sbjct: 310 DFPQPKAFPDWKTLELRNVVFHYQDNAFSVGPINLTIHRGELLFLIGGNGSGKSTLA--M 367

Query: 98  MLWLISTRPGMSII----CIANSETQLKNTLWAEV--SKWLSMLPHRHWFEMQSLSLHPS 151
           +L  +      +I+     IA  + +    L++ V    WL         +  + +L   
Sbjct: 368 LLTGLYQPQSGTILLDGQPIAAGQPEDYRKLFSAVFTDVWLFDRLLGPQGKPANPALVEK 427

Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--- 208
                 +   + ++         +  +++    +         +  DE +   D      
Sbjct: 428 WLEHLKMTHKLELNDGRILNLKLSKGQKKRIALLLALAEERDIILLDEWAADQDPHFRRE 487

Query: 209 --KSILGFFTELNPNRFWIM 226
             + +L    E+    F I 
Sbjct: 488 FYQVLLPLMQEMGKTIFAIS 507


>gi|56412839|ref|YP_149914.1| multidrug transporter membrane protein/ATP-binding protein
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197361772|ref|YP_002141408.1| multidrug transporter membrane protein/ATP-binding protein
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|56127096|gb|AAV76602.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197093248|emb|CAR58693.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 547

 Score = 37.2 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 22/200 (11%)

Query: 47  HFSQPH---RWQLEFMEAVDVHCHSNVNNSNPTIFKC------AISAGRGIGKTTLNAWM 97
            F QP     W+   +  V  H   N  +  P            +  G G GK+TL   M
Sbjct: 310 DFPQPKAFPDWKTLELRNVVFHYQDNAFSVGPINLTIHRGELLFLIGGNGSGKSTLA--M 367

Query: 98  MLWLISTRPGMSII----CIANSETQLKNTLWAEV--SKWLSMLPHRHWFEMQSLSLHPS 151
           +L  +      +I+     IA  + +    L++ V    WL         +  + +L   
Sbjct: 368 LLTGLYQPQSGTILLDGQPIAAGQPEDYRKLFSAVFTDVWLFDRLLGPQGKPANPALVEK 427

Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--- 208
                 +   + ++         +  +++    +         +  DE +   D      
Sbjct: 428 WLEHLKMTHKLELNDGRILNLKLSKGQKKRIALLLALAEERDIILLDEWAADQDPHFRRE 487

Query: 209 --KSILGFFTELNPNRFWIM 226
             + +L    E+    F I 
Sbjct: 488 FYQVLLPLMQEMGKTIFAIS 507


>gi|16765591|ref|NP_461206.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|167992594|ref|ZP_02573691.1| ABC transporter ATP-binding protein YojI [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|200386629|ref|ZP_03213241.1| ABC transporter ATP-binding protein YojI [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|16420802|gb|AAL21165.1| putative ABC-type multidrug/protein/lipid transport system
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|199603727|gb|EDZ02272.1| ABC transporter ATP-binding protein YojI [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|205329224|gb|EDZ15988.1| ABC transporter ATP-binding protein YojI [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261247472|emb|CBG25299.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267994349|gb|ACY89234.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 14028S]
 gi|301158822|emb|CBW18335.1| putative ABC transporter ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312913254|dbj|BAJ37228.1| multidrug ABC transporter permease/ATP-binding protein [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|321223037|gb|EFX48108.1| Putative ATP-binding component of a transport system [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|323130594|gb|ADX18024.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 4/74]
 gi|332989197|gb|AEF08180.1| multidrug transporter membrane component/ATP-binding component
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. UK-1]
          Length = 547

 Score = 37.2 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 22/200 (11%)

Query: 47  HFSQPH---RWQLEFMEAVDVHCHSNVNNSNPTIFKC------AISAGRGIGKTTLNAWM 97
            F QP     W+   +  V  H   N  +  P            +  G G GK+TL   M
Sbjct: 310 DFPQPKAFPDWKTLELRNVVFHYQDNAFSVGPINLTIHRGELLFLIGGNGSGKSTLA--M 367

Query: 98  MLWLISTRPGMSII----CIANSETQLKNTLWAEV--SKWLSMLPHRHWFEMQSLSLHPS 151
           +L  +      +I+     IA  + +    L++ V    WL         +  + +L   
Sbjct: 368 LLTGLYQPQSGTILLDGQPIAAGQPEDYRKLFSAVFTDVWLFDRLLGPQGKPANPALVEK 427

Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--- 208
                 +   + ++         +  +++    +         +  DE +   D      
Sbjct: 428 WLEHLKMTHKLELNDGRILNLKLSKGQKKRIALLLALAEERDIILLDEWAADQDPHFRRE 487

Query: 209 --KSILGFFTELNPNRFWIM 226
             + +L    E+    F I 
Sbjct: 488 FYQVLLPLMQEMGKTIFAIS 507


>gi|255537537|ref|XP_002509835.1| rad25/xp-B DNA repair helicase, putative [Ricinus communis]
 gi|223549734|gb|EEF51222.1| rad25/xp-B DNA repair helicase, putative [Ricinus communis]
          Length = 768

 Score = 37.2 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 22/187 (11%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
               L+  +QP  +Q + +  +  +  +             +    G GK+     ++  
Sbjct: 270 LDMELKPHAQPRPYQEKSLSKMFGNGRARSG--------IIVLPC-GAGKS-----LVGV 315

Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
             + R   S +C+A +   +    WA   +  S +         S S       A ++  
Sbjct: 316 SAACRIKKSCLCLATNAVSVDQ--WAFQFQLWSTIREEQICRFTSDSKERFQGNAGVVVT 373

Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220
           +               SEE         N     +  DE    P  + + ++   T+ + 
Sbjct: 374 TYN-----MVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVI-SLTKSHC 427

Query: 221 NRFWIMT 227
                 T
Sbjct: 428 KLGLTAT 434


>gi|156033071|ref|XP_001585372.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
 gi|154699014|gb|EDN98752.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 814

 Score = 37.2 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 63/237 (26%), Gaps = 28/237 (11%)

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134
           P+    AI    G GK+T+ +     L+      +   I  +   +       + + + M
Sbjct: 533 PSGTNVAIVGPSGGGKSTIGS-----LLLRFYNPTEGKITINGQDITKMNAKSLRRRIGM 587

Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN----- 189
           +         S++ + +          +   ++       +   E  DT VG        
Sbjct: 588 VGQEPVLMSGSVAENIAYGKPHASRSEIIAAARKANCQFISDFPEGLDTQVGARGAQLSG 647

Query: 190 -------------THGMAVFNDEASGTPDIINK-----SILGFFTELNPNRFWIMTSNTR 231
                         +   +  DEA+   D  ++     ++       N         +T 
Sbjct: 648 GQKQRIAIARALLKNPDILILDEATSALDAESETLVNSALAALLRGQNTTISIAHRLSTI 707

Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288
           + +     + N              +                G  +D   +E+ G F
Sbjct: 708 KRSDHVIVLGNDGKVAETGTYNSLSSNPNSAFSKLMEWQMSGGDAADHRPVELEGHF 764


>gi|310799549|gb|EFQ34442.1| UvrD/REP helicase [Glomerella graminicola M1.001]
          Length = 988

 Score = 37.2 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 21/218 (9%), Positives = 54/218 (24%), Gaps = 23/218 (10%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLIST--RPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137
            AI AG G GKT   A  ++WL+         I+    +    +                
Sbjct: 33  VAILAGPGSGKTHTLASRVVWLLDNVGYAPADIVVATFTVKSAREM---------KERIT 83

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197
           +   + +   +    +++           +         +++     +       + +  
Sbjct: 84  KALGDDRGKKIVLGTFHSIARRYLAAYGKRIGLDEKFAIADDADSRSIIQRICKRLQLSV 143

Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257
           D     P +    I    ++ +           ++ NG            ++ YQI    
Sbjct: 144 D-----PPVARSWISKKKSKGDNQ-------TPQKRNGQAVPQSRDLETCFREYQIHLEH 191

Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN 295
            + +D                     +      +  + 
Sbjct: 192 SKLLDYDDLLTRCVELLRKHPSCVANVQAVLIDEYQDT 229


>gi|116200720|ref|XP_001226172.1| hypothetical protein CHGG_10905 [Chaetomium globosum CBS 148.51]
 gi|88175619|gb|EAQ83087.1| hypothetical protein CHGG_10905 [Chaetomium globosum CBS 148.51]
          Length = 420

 Score = 37.2 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 8/98 (8%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q +  E +  H  +   N  P   +  I  G G GK+ +        +  RP   +   A
Sbjct: 13  QRQVYETIMRHFKAKNENRRPPPLRLQIDGGGGTGKSYMV-------VYGRPSPIVRA-A 64

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSG 152
            +           +   L +     +  +       + 
Sbjct: 65  PTGVASNQIGGQTLHSLLRLPVDGDYRSLSETPTTLNA 102


>gi|119775874|ref|YP_928614.1| ATP-dependent RNA helicase SrmB [Shewanella amazonensis SB2B]
 gi|119768374|gb|ABM00945.1| superfamily II DNA and RNA helicase-like protein [Shewanella
           amazonensis SB2B]
          Length = 613

 Score = 37.2 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 20/225 (8%), Positives = 38/225 (16%), Gaps = 18/225 (8%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-----SIICIAN 115
                                  A  G GKT       L  +   P        ++ +  
Sbjct: 22  NTPTTIQRMTIPLAMEQRDILARAPTGTGKTASFLLPALQHLIDFPRRRPGQPRVLVLTP 81

Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
           +           + ++       H      L +           Q   + S    +    
Sbjct: 82  TRELASQ-----IHRY-----ASHLATNLELDIKLITGGVPYGPQEEMLKSNVDILVATP 131

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
                              +  DEA    D+    ++         R   M  +     G
Sbjct: 132 GRLLEYLDKGHFSAELVEVLVIDEADRMLDMGFGEVVKTIAVEASGRKQAMLFSATLEGG 191

Query: 236 WFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280
                 +   E               +       I          
Sbjct: 192 GVG---SFARELLNEPMFVESEPPRSEKAKIHQWIHLADDKDHKF 233


>gi|255711490|ref|XP_002552028.1| KLTH0B05522p [Lachancea thermotolerans]
 gi|238933406|emb|CAR21590.1| KLTH0B05522p [Lachancea thermotolerans]
          Length = 1055

 Score = 37.2 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 43/125 (34%), Gaps = 10/125 (8%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            A++AGRG GK+      +   +S     +I   + S   LK  L+  + K    L ++ 
Sbjct: 279 VALTAGRGRGKSAALGIAIAAAVSHGY-SNIFVTSPSPENLKT-LFEFIFKGFDALGYQE 336

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +   +      +   ++   +    +      +T     P+            V  DE
Sbjct: 337 HMDYDIIQSTNPSFNKAIVRVDIKKSHR------QTIQYIVPNDSHVLG--QAELVVIDE 388

Query: 200 ASGTP 204
           A+  P
Sbjct: 389 AAAIP 393


>gi|319781686|ref|YP_004141162.1| ATPase, FliI/YscN family [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317167574|gb|ADV11112.1| ATPase, FliI/YscN family [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 467

 Score = 37.2 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 53/215 (24%), Gaps = 13/215 (6%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
           +  I AG G+GK+TL A +          + +  I     +++  L   +   ++     
Sbjct: 183 RLGIFAGSGVGKSTLLAMLA--GADAFDTVVVALIGERGREVREFLEDTIGDSMAKTIAV 240

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSK--------HYTITCRTYSEERPDTFVGPHNT 190
                +S  +        +       D            T       E    T   P   
Sbjct: 241 VATSDESAMMRRRAPDTAMRVAEHFRDQGHRVLLVLDSITRFAHALREVATGTGEPPVAR 300

Query: 191 HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250
              A    E    P ++ ++  G   + +      +  +    N    D     L+    
Sbjct: 301 GYPASVFTE---LPKLLERAGPGTEGKGSITAIISVLVDGDDHNDPVADSVRGILDGHVV 357

Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285
                              ISR    +       L
Sbjct: 358 LDRTIAEQGRYPPVNPLSSISRLAGKAWSVEQRAL 392


>gi|313902722|ref|ZP_07836120.1| CRISPR-associated helicase, Cas3 family [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467019|gb|EFR62535.1| CRISPR-associated helicase, Cas3 family [Thermaerobacter
           subterraneus DSM 13965]
          Length = 727

 Score = 37.2 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 36/157 (22%), Gaps = 11/157 (7%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN- 115
                V   C    +   P +++  +    G GKT       L          ++     
Sbjct: 223 RIRREVYEACVRAASGP-PGVYRLTV--PTGGGKTRSGLAFALRHALIHDLRRVVVAIPY 279

Query: 116 ------SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
                 +    +  L  E              + +          A     +  + +   
Sbjct: 280 TSIIDQTARVYREILGDEAVLEHHSALQVPEEDERQDESVVRHRLATENWDAPIVVTTTV 339

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
            +    +S  RP      H   G  +  DE    P  
Sbjct: 340 QMLESLFS-NRPSKVRKIHRLSGAVIVLDEVQALPPE 375


>gi|262374049|ref|ZP_06067326.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter junii SH205]
 gi|262311060|gb|EEY92147.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter junii SH205]
          Length = 581

 Score = 37.2 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 35/124 (28%), Gaps = 16/124 (12%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
            I+ G G GKT   A ++  L  T P + I   A +    +                   
Sbjct: 143 IITGGPGTGKTYTLARIIAALNQTIPDIRIAMAAPTGKAAQRM----------------Q 186

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
             +Q+    P    + L+  S+   S             +   F          +  DEA
Sbjct: 187 EALQNSFKDPKLLESGLVTDSLRQQSTQTLHRLLGMGNRQVPRFNLKQPLPYDVIVVDEA 246

Query: 201 SGTP 204
           S   
Sbjct: 247 SMLD 250


>gi|237735627|ref|ZP_04566108.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229381372|gb|EEO31463.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 644

 Score = 36.8 bits (83), Expect = 4.7,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 50/193 (25%), Gaps = 24/193 (12%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q   ++  D +             K  I A  G GKTTL        +  R   S +
Sbjct: 13  RSYQQRVLDKYDRYSQD---------RKIHIVAAPGSGKTTLG-----IELIKRIDYSAL 58

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +  S   ++      + +   +        +      P        +      S +   
Sbjct: 59  ILVPSI-TIREQWVERICEAFLVKQENRDQYLSQDLKKPKLITVVTYQALHSAMSHYCGE 117

Query: 172 TCRTYSEERPDTFVGPHNTHGM---------AVFNDEASGTPDIINKSILGFFTELNPNR 222
              T  E +    V  HN   +          +  DE         KS+  F    N   
Sbjct: 118 LVETNDEFKTVEEVDYHNFDVISNFKECQLGTLCLDECHHLRSEWWKSLEEFKKAFNNIF 177

Query: 223 FWIMTSNTRRLNG 235
              +T+     + 
Sbjct: 178 TVALTATPPYDSN 190


>gi|167757292|ref|ZP_02429419.1| hypothetical protein CLORAM_02842 [Clostridium ramosum DSM 1402]
 gi|167703467|gb|EDS18046.1| hypothetical protein CLORAM_02842 [Clostridium ramosum DSM 1402]
          Length = 890

 Score = 36.8 bits (83), Expect = 4.7,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 50/193 (25%), Gaps = 24/193 (12%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111
             +Q   ++  D +             K  I A  G GKTTL        +  R   S +
Sbjct: 13  RSYQQRVLDKYDRYSQD---------RKIHIVAAPGSGKTTLG-----IELIKRIDYSAL 58

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
            +  S   ++      + +   +        +      P        +      S +   
Sbjct: 59  ILVPSI-TIREQWVERICEAFLVKQENRDQYLSQDLKKPKLITVVTYQALHSAMSHYCGE 117

Query: 172 TCRTYSEERPDTFVGPHNTHGM---------AVFNDEASGTPDIINKSILGFFTELNPNR 222
              T  E +    V  HN   +          +  DE         KS+  F    N   
Sbjct: 118 LVETNDEFKTVEEVDYHNFDVISNFKECQLGTLCLDECHHLRSEWWKSLEEFKKAFNNIF 177

Query: 223 FWIMTSNTRRLNG 235
              +T+     + 
Sbjct: 178 TVALTATPPYDSN 190


>gi|126010850|ref|YP_001039815.1| putative phage terminase large subunit [Vibrio phage VP882]
 gi|123203860|gb|ABM73380.1| putative phage terminase large subunit [Vibrio phage VP882]
          Length = 689

 Score = 36.8 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 46/232 (19%), Gaps = 22/232 (9%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
           NP   +     G  +GK+     ++ W +   P   I+ +A +   +  T+  +      
Sbjct: 92  NPQYNRVTFVMGTQMGKSVSMENLVGWRLDDDPTP-IMYVAPTSNLIDTTVEPKFMDMFQ 150

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
                            S        +S         +    +      +          
Sbjct: 151 QA--------------ESLARKYDWNRSTKY---TKWVGGTKFRFAWAGSPTELAADSAG 193

Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253
            V  DE     +                        T        +    P      +  
Sbjct: 194 LVLVDEVDRIVNTGEGDTTEIIEARGDAYVDSKIGYTATPTHGKVERTEHPRTGLTHWAR 253

Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEE 304
             R      S     +                GQ F       + P    EE
Sbjct: 254 SHRDA---LSSAIWRLWQSGTRHEWAVPCPHCGQYFIPHSELLWWPGKGTEE 302


>gi|227892327|ref|ZP_04010132.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741]
 gi|227865876|gb|EEJ73297.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741]
          Length = 426

 Score = 36.8 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 53/212 (25%), Gaps = 25/212 (11%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
           E F++P   Q      +                     A  G GKT   +  +L  I  +
Sbjct: 12  EGFTEPTLIQKYVYPKLAEG------------KNVVGLAPTGSGKTLAYSLPLLEKILPK 59

Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165
            G  ++ +A S+                    R W ++  LS+      A +  Q   + 
Sbjct: 60  DGSQLLIMAPSQELAAQLT----------NTIRPWAKLLDLSVIGLLGGANVKRQIEKLK 109

Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRF 223
                +                      ++  DEA      +     +    +       
Sbjct: 110 KHPEVVIGTPGRLLNLINLKKLKLHKIESIVIDEADEMLGDEDSLNDVREIVSHCPSEAQ 169

Query: 224 WIMTSNTRRLN-GWFYDIFNIPLEDWKRYQID 254
               S T        +  F + +E     + D
Sbjct: 170 ISFFSATEAPILSELHRWFGVDVEKIDVRKED 201


>gi|255935507|ref|XP_002558780.1| Pc13g03430 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211583400|emb|CAP91412.1| Pc13g03430 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1035

 Score = 36.8 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 43/150 (28%), Gaps = 15/150 (10%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q + +             S        ++AGRG GK+      +          +I   +
Sbjct: 261 QAKALLTFVDAIAEKTLKST-----VTLTAGRGRGKSAALGVAIA-AAVAHGYSNIFITS 314

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            S   LK  L+  + K    L +    +   L      +   ++  ++  + +      +
Sbjct: 315 PSPENLKT-LFEFIFKGFDALGYLDHVDYTILQSTNPDFNKAVVRVNIHRNHRQTIQYIQ 373

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
               +               +  DEA+  P
Sbjct: 374 PQDAQVLGQAE--------LLVIDEAAAIP 395


>gi|53749347|gb|AAU90206.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1256

 Score = 36.8 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 14/135 (10%), Positives = 35/135 (25%), Gaps = 2/135 (1%)

Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS-MGIDSKHYTITCRTYSEERPDTFVG 186
           V  W++ L      + +  +    G  +           SK      +T + ++ +    
Sbjct: 277 VEGWIASLDIEEKAQEKDAASKGDGGQSTANVVHKAQNKSKGKYKAQQTTNFKKKNNNNN 336

Query: 187 PHNTHGMAVFNDEASGTPDII-NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL 245
            +         D+          +  +            +   NT   +G+ +  F+ P 
Sbjct: 337 SNQDERTCFVCDQPDHLARKCPQRKRMKALAGQTSKSANVTIGNTGDGSGYGHTGFHRPN 396

Query: 246 EDWKRYQIDTRTVEG 260
            +W            
Sbjct: 397 GEWVTCFCSWCWHGR 411


>gi|332524079|ref|ZP_08400331.1| putative phage terminase, large subunit [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332315343|gb|EGJ28328.1| putative phage terminase, large subunit [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 530

 Score = 36.8 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 42/331 (12%), Positives = 82/331 (24%), Gaps = 59/331 (17%)

Query: 38  WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97
           W  K   L        WQ + +  +      + N    T +   I   +  GK+ L A +
Sbjct: 39  WAGKKFELL------PWQEQIVRDLFGIVKEDGNRQFLTAY---IEIPKKNGKSELAAAI 89

Query: 98  MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157
            L+L+           A       +   A +            F++    +  S    + 
Sbjct: 90  ALYLLYADNEA----SAEVYGAACDRNQASIV-----------FDVAKQMVLMSRPLEKR 134

Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217
            +                Y     +T    H  +   +  DE    P+     +L   + 
Sbjct: 135 SKIMGATKRIVNYSNAGFYQVLSAETG-TKHGLNVSGLVFDEIHAQPNRHLYDVLTKGSG 193

Query: 218 LNPNRFWIMTSNT--RRLNGWFYDIFNIP----------------------LEDW----K 249
               +       T     N   Y++                           +DW     
Sbjct: 194 DAREQPLFFIITTAGTDKNSICYELHTKALDILKGRKKDTSFYPVVYGLSDEDDWNDEAN 253

Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDS---DVARIEILGQFPQQEVNNFIPHN-YIEEA 305
             + +      I          +   +    +V +   L  +    V  +IP + Y +  
Sbjct: 254 WLKANPSLGHTIGIDRVREAYQQALDNPAEENVFKQLRLNMWTSSSV-AWIPEHVYAKGN 312

Query: 306 MSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336
              +           G D++    D T  V 
Sbjct: 313 APIDYEALKGRDCYAGLDLSST-SDITAFVL 342


>gi|17533985|ref|NP_496515.1| yeast DNA helicase/endonuclease family member (dna-2)
           [Caenorhabditis elegans]
 gi|3877086|emb|CAA90399.1| C. elegans protein F43G6.1a, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 1105

 Score = 36.8 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 36/122 (29%), Gaps = 8/122 (6%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW--FEMQ 144
           G GKTTL + ++           ++  A + + + N L     +  +    R      ++
Sbjct: 711 GSGKTTLISVLI--QCLVATNKKVLLAAFTHSAVDNILTKLTKEVAAEKILRLGSSSSIK 768

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTY----SEERPDTFVGPHNTHGMAVFNDEA 200
                 +       E S    +    +   T     +       +     H   V  DEA
Sbjct: 769 DDIKKMTLKAKLENETSEEYYAAVRKVMKTTPIVACTCHHVPRELLFSYRHFDVVIVDEA 828

Query: 201 SG 202
           S 
Sbjct: 829 SM 830


>gi|17533987|ref|NP_496516.1| yeast DNA helicase/endonuclease family member (dna-2)
           [Caenorhabditis elegans]
 gi|5824500|emb|CAB54253.1| C. elegans protein F43G6.1b, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 1069

 Score = 36.8 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 36/122 (29%), Gaps = 8/122 (6%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW--FEMQ 144
           G GKTTL + ++           ++  A + + + N L     +  +    R      ++
Sbjct: 675 GSGKTTLISVLI--QCLVATNKKVLLAAFTHSAVDNILTKLTKEVAAEKILRLGSSSSIK 732

Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTY----SEERPDTFVGPHNTHGMAVFNDEA 200
                 +       E S    +    +   T     +       +     H   V  DEA
Sbjct: 733 DDIKKMTLKAKLENETSEEYYAAVRKVMKTTPIVACTCHHVPRELLFSYRHFDVVIVDEA 792

Query: 201 SG 202
           S 
Sbjct: 793 SM 794


>gi|262113737|emb|CAR95404.1| hypothetical protein [Streptococcus phage phi-m46.1]
          Length = 530

 Score = 36.8 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 39/324 (12%), Positives = 79/324 (24%), Gaps = 53/324 (16%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ + +  +      + N    T +   I   +  GK+ L A + L+L+          
Sbjct: 48  PWQEQIVRDLFGIVKEDGNRQFLTAY---IEIPKKNGKSELAAAIALYLLYADNEA---- 100

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            A       +   A +            F++    +  S    +  +             
Sbjct: 101 SAEVYGAACDRNQASIV-----------FDVAKQMVQMSRPLEKRSKIMGATKRIVNYSN 149

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT-- 230
              Y     +T    H  +   +  DE    P+     +L   +     +       T  
Sbjct: 150 AGFYQVLSAETG-TKHGLNVSGLVFDEIHAQPNRHLYDVLTKGSGDAREQPLFFIITTAG 208

Query: 231 RRLNGWFYDIFNIP----------------------LEDW----KRYQIDTRTVEGIDSG 264
              N   Y++                           +DW       + +      I   
Sbjct: 209 TDRNSICYELHTKALDILNGRKKDTSFYPVVYGLSDEDDWNDEENWRRANPSLGHTIGID 268

Query: 265 FHEGIISRYGLDS---DVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLIM 320
                  +   +    +V +   L  +    V  +IP +   +     +           
Sbjct: 269 RVREAYQQALDNPAEENVFKQLRLNMWTSSSV-AWIPEHVYAKGNDPIQYESLKGRSCYA 327

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEH 344
           G D++    D T  V       E 
Sbjct: 328 GLDLSST-SDITAFVLVFPPRFEE 350


>gi|257413151|ref|ZP_05591542.1| phage terminase large subunit [Roseburia intestinalis L1-82]
 gi|257204482|gb|EEV02767.1| phage terminase large subunit [Roseburia intestinalis L1-82]
          Length = 408

 Score = 36.8 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 24/200 (12%), Positives = 50/200 (25%), Gaps = 20/200 (10%)

Query: 74  NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133
           +P + K  + A   +GK+ +   ++ ++I   PG +I  +  +    +          L 
Sbjct: 67  DPKVNKLTVVAASQVGKSEVELNIIGYIIDQDPGSTI-YVQPTLDDARKFS------RLR 119

Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193
           + P     +     +                                 ++     +T   
Sbjct: 120 IAPMIRDSKPLRKKVSDVKTRDSGNTILQKSFPGGMLTIT------GSNSPSALASTPAR 173

Query: 194 AVFNDE------ASGTPDIINKSILGFFTE-LNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246
            +  DE      ++GT            T   N     + T   +  +      F    E
Sbjct: 174 YIIGDERDRWASSAGTEGDPWALAEARQTTFYNAKSIEVSTPTIKGASNIENGFFAGTQE 233

Query: 247 DWKRYQIDTRTVEGIDSGFH 266
            W     D      I     
Sbjct: 234 RWCHKCPDCGEYHNIVFDNI 253


>gi|259908735|ref|YP_002649091.1| ATPase family protein [Erwinia pyrifoliae Ep1/96]
 gi|224964357|emb|CAX55866.1| ATPase family protein [Erwinia pyrifoliae Ep1/96]
 gi|283478708|emb|CAY74624.1| putative DNA-binding protein [Erwinia pyrifoliae DSM 12163]
          Length = 455

 Score = 36.8 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 22/176 (12%), Positives = 52/176 (29%), Gaps = 9/176 (5%)

Query: 57  EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
           E +   +   +              I   RG+GKT+L   + + L        I      
Sbjct: 29  EMLFGREKQINEIEGALYADGRHAFIYGDRGVGKTSLAQTIAVKLQQENDP--IFVGCEP 86

Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176
           ++ L   +   +SK +  +       + +   +     +   ++S             + 
Sbjct: 87  KSSLSTIVQDILSKGIKSIDLAKETTLGAGVSYSGIGLSAQYKKSEKATP--QVTQSVSS 144

Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPD----IINKSILGFFTELNPNRFWIMTS 228
           +     + +G H++    +  DE     D         ++    + + N   I T 
Sbjct: 145 AASALASLIGKHSSTP-FIVIDEFDQIEDIEERKNFGRLIKNLGDQDVNIKIIFTG 199


>gi|113474651|ref|YP_720712.1| hypothetical protein Tery_0825 [Trichodesmium erythraeum IMS101]
 gi|110165699|gb|ABG50239.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101]
          Length = 271

 Score = 36.8 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 38/125 (30%), Gaps = 1/125 (0%)

Query: 77  IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136
           +    I    G GKTT  A +  W   T P   I  I N    L       +    S+ P
Sbjct: 1   MGNICIIGPTGAGKTTYLAGLAYWPEKTNPNFQITAITNDAKNLATKAENIILNGASLEP 60

Query: 137 H-RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
                 ++QS    P   +   ++       +   +  R Y  E  +      +      
Sbjct: 61  TIIDGIKIQSFYDLPLYSFHIEIKHWWQRKPEEINLVVRDYPGEIFNELQSGMSNTLHQE 120

Query: 196 FNDEA 200
           F DE 
Sbjct: 121 FFDEC 125


>gi|254585391|ref|XP_002498263.1| ZYRO0G06182p [Zygosaccharomyces rouxii]
 gi|238941157|emb|CAR29330.1| ZYRO0G06182p [Zygosaccharomyces rouxii]
          Length = 1055

 Score = 36.8 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 10/134 (7%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           A++AGRG GK+      +   +S     +I   + S   LK  L+  + K    L ++  
Sbjct: 280 ALTAGRGRGKSAALGVAIAAAVSHGY-SNIFVTSPSPENLKT-LFEFIFKGFDALGYQEH 337

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
            +   +      +   ++   +  D +                           V  DEA
Sbjct: 338 IDYDIIQSTNPDFNRAIVRVDIRRDHRQTIQYILPQDSHVLGQAE--------LVVIDEA 389

Query: 201 SGTPDIINKSILGF 214
           +  P  I K++LG 
Sbjct: 390 AAIPLQIVKNLLGP 403


>gi|116197284|ref|XP_001224454.1| hypothetical protein CHGG_05240 [Chaetomium globosum CBS 148.51]
 gi|88181153|gb|EAQ88621.1| hypothetical protein CHGG_05240 [Chaetomium globosum CBS 148.51]
          Length = 572

 Score = 36.8 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 15/116 (12%), Positives = 32/116 (27%), Gaps = 4/116 (3%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           +  PL         Q +  + +  H  +   N  P   +  I    G GK+ +   +   
Sbjct: 109 EDMPLAARDTLDTQQRQVYDTIMRHFRAKNENRRPPPLRLQIDGEGGTGKSYMVKVISSH 168

Query: 101 L----ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSG 152
           L     S      I+  A +           +   L +    ++  +       + 
Sbjct: 169 LQAKAASYGRPSPIVRAAPTGVASNQIGGQTLHSLLRLPVDGNYRSLSETLTTLNA 224


>gi|167768860|ref|ZP_02440913.1| hypothetical protein ANACOL_00177 [Anaerotruncus colihominis DSM
           17241]
 gi|167669032|gb|EDS13162.1| hypothetical protein ANACOL_00177 [Anaerotruncus colihominis DSM
           17241]
          Length = 644

 Score = 36.8 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 23/281 (8%), Positives = 60/281 (21%), Gaps = 24/281 (8%)

Query: 35  FFPWGIK--GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS-AGRGIGKT 91
              W         E  ++P  W+ E       +    ++       +  +  A   +GK+
Sbjct: 31  VTEWAEACRRLSTESSAEPGPWRTER----TPYLREPMDAFTDPRVRHIVMVAASQVGKS 86

Query: 92  TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151
                 + ++I   PG  I+ +  +    K      ++  +   P          S   +
Sbjct: 87  EFLNNCIGYIIDEDPGS-ILFVHPTGIDAKEYSKLRIATMIRDCPTLRKKVSNPKSRDSN 145

Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH----------NTHGMAVFNDEAS 201
               +       +     T      S+     F                        + +
Sbjct: 146 NTILQKTYPGGILTMCGSTEAHALASKPIRYVFGDERDRWALSAGNEGDPWGLAMARQTT 205

Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV--- 258
                  +         +       T    R               W   + +       
Sbjct: 206 FYNAKAVEVSTPTIKNTSAIELAYATGTMERWKSRCPHCGEYHEIRWADIRFEYEENIIV 265

Query: 259 EGIDSGFHEGIISRYG---LDSDVARIEILGQFPQQEVNNF 296
                          G   + S+     +  ++  +  + +
Sbjct: 266 GRKTYKVTNVWYVCPGCACVSSEFEMKRVPAKWMAENPDAY 306


>gi|149408270|ref|YP_001294549.1| hypothetical protein ORF041 [Pseudomonas phage M6]
          Length = 564

 Score = 36.8 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 59/205 (28%), Gaps = 12/205 (5%)

Query: 61  AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
               H       S     + AI   +G GK+ L      WL        ++ +A +    
Sbjct: 8   EPFNHQREEWLRSREEEAR-AIFWEQGTGKSKLTIDTACWLWLRGLIDGVLVVAPNGVH- 65

Query: 121 KNTLWAEV-----SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175
           +N +  E+      + +  +   H+   ++ +         ++E               T
Sbjct: 66  RNWVEKEIPDHVPDEVIKHVRAFHYQSPKADTKWHKQAVKAVIEHKGFAWLTISYEAFMT 125

Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235
            S +R    +   +   +    DEA        +             F  + + T    G
Sbjct: 126 ASGKRA--LIDFFDKRRLLYVLDEAHYIKTPTAERTKSILRSAKYAPFRRVLTGTPIAQG 183

Query: 236 WFYDIFNIP---LEDWKRYQIDTRT 257
            F     I     + W + Q+ T T
Sbjct: 184 PFDAYSQIKFLIDDYWNKNQLGTFT 208


>gi|115373405|ref|ZP_01460703.1| hypothetical protein STIAU_7375 [Stigmatella aurantiaca DW4/3-1]
 gi|310822543|ref|YP_003954901.1| helicase [Stigmatella aurantiaca DW4/3-1]
 gi|115369571|gb|EAU68508.1| hypothetical protein STIAU_7375 [Stigmatella aurantiaca DW4/3-1]
 gi|309395615|gb|ADO73074.1| Helicase [Stigmatella aurantiaca DW4/3-1]
          Length = 1140

 Score = 36.8 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 17/40 (42%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126
           G GKTT  A ++   +   PG  I+ +A +       +  
Sbjct: 253 GTGKTTAVAGLIAQALRAYPGERILAVAPTNRAADELVMR 292


>gi|154312826|ref|XP_001555740.1| hypothetical protein BC1G_05114 [Botryotinia fuckeliana B05.10]
 gi|150849816|gb|EDN25009.1| hypothetical protein BC1G_05114 [Botryotinia fuckeliana B05.10]
          Length = 1056

 Score = 36.8 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 24/203 (11%), Positives = 54/203 (26%), Gaps = 17/203 (8%)

Query: 32   VMRFFPWGIKGKPLEHFS----QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRG 87
            +    P G+    +E       Q   +QL+ +  +       +N               G
Sbjct: 847  MNFQNPAGMGDVDIEQPKMLQAQLKEYQLKGLNWLVNLYEQGINGILADEM--------G 898

Query: 88   IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147
            +GKT  +  +M +L           +    + L N    E++K++  L    ++   +  
Sbjct: 899  LGKTVQSISVMAYLAEKHGIWGPFLVVAPASTLHN-WQQEITKFVPKLKVLPYWGTAADR 957

Query: 148  LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207
                 +      + +    +       T  +                +  DEA       
Sbjct: 958  KVLRKF---WDRKHITYTEEAPFHVLITSYQLVVSDVAYFQKMKWQYMILDEAQAIKSSQ 1014

Query: 208  NKSILGFFTELNPNRFWIMTSNT 230
              S        +     ++T   
Sbjct: 1015 -SSRWKSLLGFHCRNRLLLTGTP 1036


>gi|149204026|ref|ZP_01880994.1| DEAD/DEAH box helicase-like protein [Roseovarius sp. TM1035]
 gi|149142468|gb|EDM30513.1| DEAD/DEAH box helicase-like protein [Roseovarius sp. TM1035]
          Length = 429

 Score = 36.8 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 20/167 (11%), Positives = 41/167 (24%), Gaps = 34/167 (20%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
           E  ++P   Q   +                  F     A  G GKT      ++  +   
Sbjct: 14  EGITEPTPIQTHAI------------PHALNGFDVLGLAQTGTGKTMAFGLPLITALMQA 61

Query: 106 PGM------SIICIANSE---TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
           PG         + +A +    +Q+++ L   V                 + ++     A 
Sbjct: 62  PGKPAPKTIRSLILAPTRELASQIRDALLPLVKD-------------SPIKINLVVGGAS 108

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
           +  Q   ++     +                       +  DEA   
Sbjct: 109 INPQIKRLEQGTDILVATPGRLLDLIDRRAVRLDAAHFLVLDEADQM 155


>gi|310798654|gb|EFQ33547.1| DNA replication factor Dna2 [Glomerella graminicola M1.001]
          Length = 1618

 Score = 36.8 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 32/119 (26%), Gaps = 5/119 (4%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKTT  A ++        G S++  + + T + N L         +L      ++   
Sbjct: 1125 GTGKTTTIAHII--RALVSQGKSVLLTSYTHTAVDNILLKLKDDKTPILRLGAPAKVHPD 1182

Query: 147  -SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                       +       ++ H T    T                      DEAS   
Sbjct: 1183 VQQFAILAGQPMKSFEQIKEAWHDTPIVATTCLGVGHALFNER--TFDYCIVDEASQIT 1239


>gi|302189625|ref|ZP_07266298.1| terminase [Pseudomonas syringae pv. syringae 642]
          Length = 561

 Score = 36.8 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 57/196 (29%), Gaps = 16/196 (8%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST--RPGMS 109
             W  EF+ A+             T F   IS     GK+T+ A +ML  +    R    
Sbjct: 57  RSWVNEFVAAIFGAYDPYSGRRMITEFMLLISK--KNGKSTIAAGIMLTALVLNWRTSGE 114

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
            I +A ++    N+         +    +H F++Q      + +      + +  DS+  
Sbjct: 115 FIILAPTKEIADNSYIPIRDMVKADDELKHLFKVQDHLRTVTHYETGATLKVVAADSET- 173

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
            ++ +       D                EA+G          G  +       W  T +
Sbjct: 174 -VSGKKAIGVFIDELWVFGKRANAEAMLREATG----------GLASRPEGFIIWATTQS 222

Query: 230 TRRLNGWFYDIFNIPL 245
                G F        
Sbjct: 223 DEPPAGVFRQKLLYAR 238


>gi|29826538|ref|NP_828844.1| putative helicase [Streptomyces avermitilis MA-4680]
 gi|29611336|dbj|BAC75379.1| putative helicase [Streptomyces avermitilis MA-4680]
          Length = 885

 Score = 36.8 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 36/153 (23%), Gaps = 28/153 (18%)

Query: 75  PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT--LWAEVSK-- 130
           P   +  I +  G GKT   A   L       G  I+    +   L  T   W  V    
Sbjct: 31  PQGARGTIVSATGSGKTFTAAACAL---ECFSGGRILVTVPTLDLLVQTAQAWRLVGHRS 87

Query: 131 ------------WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178
                        L+ L  R       L+L        +      +  +          +
Sbjct: 88  PMVAVCSLENDPVLNELGVRTTTNPIQLALWAGAGTVVVFATYASLVDREDFDDPMGQRK 147

Query: 179 ER---------PDTFVGPHNTHGMAVFNDEASG 202
            R          +   G           DEA G
Sbjct: 148 VRGPLEAALAGGERLYGQQMAGFDLAIVDEAHG 180


>gi|108762196|ref|YP_633652.1| hypothetical protein MXAN_5509 [Myxococcus xanthus DK 1622]
 gi|108466076|gb|ABF91261.1| conserved domain protein [Myxococcus xanthus DK 1622]
          Length = 1214

 Score = 36.8 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 17/40 (42%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126
           G GKTT  A ++   +   PG  I+ +A +       +  
Sbjct: 318 GTGKTTAVADLIARALRAFPGERILAVAPTNRAADELVLR 357


>gi|330974347|gb|EGH74413.1| terminase [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 561

 Score = 36.8 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 56/196 (28%), Gaps = 16/196 (8%)

Query: 52  HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST--RPGMS 109
             W  EF+ A+             + F   IS     GK+T+ A +ML  +    R    
Sbjct: 57  RPWVNEFVAAIFGAYDPYSGRRMISEFMLLISK--KNGKSTIAAGIMLTALVLNWRTSGE 114

Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169
            I +A ++    N+         +    +  F++Q      + +      + +  DS+  
Sbjct: 115 FIILAPTKEIADNSYIPIRDMIKADDELKALFKVQDHLRTVTHYETGATLKVVAADSET- 173

Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
            ++ +       D                EA+G          G  +       W  T +
Sbjct: 174 -VSGKKAIGVFIDELWVFGKRANAEAMLREATG----------GLASRPEGFIIWATTQS 222

Query: 230 TRRLNGWFYDIFNIPL 245
                G F        
Sbjct: 223 DEPPAGVFRQKLLYAR 238


>gi|300709278|ref|XP_002996805.1| hypothetical protein NCER_100065 [Nosema ceranae BRL01]
 gi|239606130|gb|EEQ83134.1| hypothetical protein NCER_100065 [Nosema ceranae BRL01]
          Length = 825

 Score = 36.8 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 33/260 (12%), Positives = 73/260 (28%), Gaps = 37/260 (14%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q E ++        N           ++ AGRG GK+     + +         SI   +
Sbjct: 230 QTEVLKEFM-----NAVKDRTERTIFSLQAGRGRGKSVAL-GLAIAKAVELKYSSIYISS 283

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            +   +K  L+  + K L  L ++ + +           Y+   ++ +    +      +
Sbjct: 284 PALENIK-MLFTFLIKGLEALGYKKYEDF-------KIVYSFKSKKRLVQRIEVLRNMKQ 335

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGT----------PDIINKSILGFFTELNPNRFW 224
           T     P   +  H         DEA+            P++I  +      E     F 
Sbjct: 336 TVEYFNPFDELKYH---PDMFVIDEAAAIPLPLLKKLLFPNLIFMATTSSGYEGTGRAFS 392

Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI--DSGFHEGIISRYGLDSDVARI 282
              S         Y       ++   Y+           ++   E  ++   L +   + 
Sbjct: 393 TKMS--------EYLHEQSNSDNPFSYKELFMNASIRYGNNDPVEKWLNNTLLLNIDIKK 444

Query: 283 EILGQFPQQEVNNFIPHNYI 302
                 P      ++  + +
Sbjct: 445 INKCPVPSSCDLYYVDKDVL 464


>gi|145300612|ref|YP_001143453.1| ATP-dependent RNA helicase DbpA [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853384|gb|ABO91705.1| ATP-dependent RNA helicase DbpA [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 459

 Score = 36.8 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 21/189 (11%), Positives = 46/189 (24%), Gaps = 10/189 (5%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLI-STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               A  G GKT   A  +L  +   R  +  + +  +          E+ +    LP+ 
Sbjct: 44  LIAKAKTGSGKTAAFALGLLAKLNVNRLEVQALVLCPTRELADQVAQ-EIRRLARALPNV 102

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               +            +   QS  +    +          +         +    +  D
Sbjct: 103 KLVTL--------CGGTQTAPQSATLGFGAHIAVGTPGRILKHLEQGTLELSGLKTLVLD 154

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
           EA    D+     +       P +   +  +     G       +     +         
Sbjct: 155 EADRMLDMGFGEEINRVISYAPEQRQTLLFSATYPEGIAQMSRGVQRNPVEVSVESLHEG 214

Query: 259 EGIDSGFHE 267
             I+   +E
Sbjct: 215 SAIEQKLYE 223


>gi|258653643|ref|YP_003202799.1| hypothetical protein Namu_3485 [Nakamurella multipartita DSM 44233]
 gi|258556868|gb|ACV79810.1| hypothetical protein Namu_3485 [Nakamurella multipartita DSM 44233]
          Length = 478

 Score = 36.8 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 42/333 (12%), Positives = 86/333 (25%), Gaps = 63/333 (18%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
           +      WQ   +  V      + +  + +     +  GR  GK  +   + L  +    
Sbjct: 31  YGVGLDEWQAAVICGV---LRESGSGWSASQAGLVV--GRQNGKGQILLALELAGLLLLR 85

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166
              ++  A++     +     V+                L+        ++ ++ + + S
Sbjct: 86  ES-VLHTAHAVKTSSDAFRRLVAVV---------DGHDDLTRLVRRRSHQVGQEFLELAS 135

Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF----------- 215
                           +           +  DEA   P     ++               
Sbjct: 136 GSRVSFTTR-------SASAGRGLSIDRLVVDEAEDLPAAEVGALAPTVFARPRAQSLYV 188

Query: 216 -TELNPNRFWIMTSNTRRLNGW-------FYDIFNIPLEDWKRYQIDTRTVE-----GID 262
            T   P       +  RR           +++      +D    ++  R         + 
Sbjct: 189 GTAPGPMHDAEAFTTMRRAAHHGLNPRLAWWEWCAQWGDDIDDQKLWVRVNPAVASGRVP 248

Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI--- 319
               +   S      D  R E L  F  +     +     +     E  D+  APL    
Sbjct: 249 LQAIQDDRSIL--PPDQFRAERLSMFLPRSSGPVV----FDPRRWDELTDEGSAPLRDIS 302

Query: 320 MGCD--IAGEGGDKTVVVF--RRGNIIEHIFDW 348
           +G D   +    D   V    RR +   HI +W
Sbjct: 303 IGVDAPPSR---DAVTVCIAGRRADDRLHI-EW 331


>gi|313575375|emb|CBR26904.1| hypothetical protein [Streptococcus phage phi-SsUD.1]
          Length = 530

 Score = 36.8 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 40/324 (12%), Positives = 81/324 (25%), Gaps = 53/324 (16%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ + +  +      + N    T +   I   +  GK+ L A + L+L+          
Sbjct: 48  PWQEQIVRDLFGIVKEDGNRQFLTAY---IEIPKKNGKSELAAAIALYLLYADNEA---- 100

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            A       +   A +            F++    +  S    +  +             
Sbjct: 101 SAEVYGAACDRNQASIV-----------FDVAKQMVQMSRPLEKRSKIMGATKRIVNYSN 149

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT-- 230
              Y     +T    H  +   +  DE    P+     +L   +     +       T  
Sbjct: 150 AGFYQVLSAETG-TKHGLNVSGLVFDEIHAQPNRHLYDVLTKGSGDAREQPLFFIITTAG 208

Query: 231 RRLNGWFYDIFNIP----------------------LEDW----KRYQIDTRTVEGIDSG 264
              N   Y++                           +DW       + +      I   
Sbjct: 209 TDRNSICYELHTKALDILNGRKKDTSFYPVVYGLSDEDDWNDEANWRRANPSLGHTIGID 268

Query: 265 FHEGIISRYGLDS---DVARIEILGQFPQQEVNNFIPHN-YIEEAMSREAIDDLYAPLIM 320
                  +   +    +V +   L  +    V  +IP + Y +  +  +           
Sbjct: 269 RVREAYQQALDNPAEENVFKQLRLNMWTSSSV-AWIPEHVYAKGNVPIQYESLKGRSCYA 327

Query: 321 GCDIAGEGGDKTVVVFRRGNIIEH 344
           G D++    D T  V       E 
Sbjct: 328 GLDLSST-SDITAFVLVFPPRFEE 350


>gi|242803128|ref|XP_002484111.1| nucleolar ATPase Kre33, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218717456|gb|EED16877.1| nucleolar ATPase Kre33, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 1064

 Score = 36.8 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 42/150 (28%), Gaps = 15/150 (10%)

Query: 55  QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114
           Q + +             S        ++AGRG GK+      +          +I   +
Sbjct: 261 QAKALLTFVDAIAEKTLRST-----VTLTAGRGRGKSAALGVAIA-AAVAHGYSNIFITS 314

Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174
            S   LK  L+  V K    L +    +   L      +   ++  ++  + +      +
Sbjct: 315 PSPENLKT-LFEFVFKGFDALGYLDHVDYTILQSTNPAFNKAIVRVNIHRNHRQTIQYIQ 373

Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                               +  DEA+  P
Sbjct: 374 PQDAYALGQAE--------LLVIDEAAAIP 395


>gi|239817529|ref|YP_002946439.1| exodeoxyribonuclease V, subunit alpha [Variovorax paradoxus S110]
 gi|239804106|gb|ACS21173.1| exodeoxyribonuclease V, alpha subunit [Variovorax paradoxus S110]
          Length = 708

 Score = 36.5 bits (82), Expect = 6.2,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 50/194 (25%), Gaps = 28/194 (14%)

Query: 37  PWGIKGKPLEHFSQPH-----RWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS-AGRGIGK 90
            W  +  P +  + P       WQ                 +     K +I   G G GK
Sbjct: 184 MWLDRLFPADTHASPDSEAAIDWQKAAC-------------AVALRSKLSILTGGPGTGK 230

Query: 91  TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150
           T   A ++  L +  P            +L+  L A   K  + L       +  L    
Sbjct: 231 TYTAARLLALLYAVDPAP---------ERLRIALAAPTGKAAARLKQAIETSLTELQDRL 281

Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS 210
               +     +    ++          + R   F   H      V  DEAS     +  +
Sbjct: 282 GDSLSLGALAAHIGAARTLHALLGARPDTRAFGFDAAHPLDVDVVIVDEASMIHLEMMAA 341

Query: 211 ILGFFTELNPNRFW 224
           +L            
Sbjct: 342 LLEALPTQARVILL 355


>gi|323138129|ref|ZP_08073202.1| double-strand break repair helicase AddA [Methylocystis sp. ATCC
           49242]
 gi|322396591|gb|EFX99119.1| double-strand break repair helicase AddA [Methylocystis sp. ATCC
           49242]
          Length = 1145

 Score = 36.5 bits (82), Expect = 6.3,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 37/132 (28%), Gaps = 7/132 (5%)

Query: 59  MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR-PGMSIICIANSE 117
           +  V     +   +++       +SA  G GKT + +  ++ L+  R P   I+C+  ++
Sbjct: 3   IRPVGSLTKNAQRDASDPAASAWVSANAGSGKTHVLSQRVVRLLLARVPPSRILCLTYTK 62

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
               N                 W  +   SL            S    +    +  R   
Sbjct: 63  AAAANMSARIFDVLAR------WALLDDESLIREIEATGADRPSRAELNVARCLFARAVE 116

Query: 178 EERPDTFVGPHN 189
                     H 
Sbjct: 117 TPGGLKIQTIHA 128


>gi|16798785|ref|NP_463463.1| putative terminase large subunit [Listeria phage A118]
 gi|254831265|ref|ZP_05235920.1| putative terminase large subunit from bacteriophage A118 [Listeria
           monocytogenes 10403S]
 gi|5823600|emb|CAB53788.1| putative terminase large subunit [Listeria phage A118]
          Length = 443

 Score = 36.5 bits (82), Expect = 6.3,   Method: Composition-based stats.
 Identities = 20/227 (8%), Positives = 62/227 (27%), Gaps = 22/227 (9%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
                GR   K+++ +  ++      P  +++C+      L  +++ ++   L  +    
Sbjct: 36  IIAKGGRSSMKSSVISLKLVEKKMANPMSNMVCLRKVANTLYKSVYQQIKWALYEMGVAD 95

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
            F+     +             +   +           +      +     +   ++ +E
Sbjct: 96  QFKFGKSPM------------EIVHKTWGTGFYFSGCDDPAKLKSMKIPVGYVSGLWFEE 143

Query: 200 AS------GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL--EDWKRY 251
            +          + +  I     +      ++  +  R    W  +  +     +D+  +
Sbjct: 144 LAEFSGVTDIDVVEDTFIREDLPQGQEVTIYMSFNPPRNPYEWVNEYVDSKRSDDDYLIH 203

Query: 252 QIDTRT--VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296
                      +     + I      D D  R   LG+      N +
Sbjct: 204 HTTYLDDEKGFLSKQIIKKIEKYKKNDLDYYRWMYLGEVIGLGDNVY 250


>gi|167392422|ref|XP_001740146.1| chromodomain helicase DNA binding protein [Entamoeba dispar SAW760]
 gi|165895824|gb|EDR23413.1| chromodomain helicase DNA binding protein, putative [Entamoeba
           dispar SAW760]
          Length = 1623

 Score = 36.5 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 54/194 (27%), Gaps = 12/194 (6%)

Query: 38  WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTT-LNAW 96
           W ++  P  H +    +Q+E +  +  +                     G+GKT  + A+
Sbjct: 636 WQVQEHPYRHDNTLRSYQMEGLNWLVFNWCRGKGCILADEM--------GLGKTVQVVAF 687

Query: 97  MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156
                   +     + +    T        E+++W  M    +    ++  L     +  
Sbjct: 688 FEHLRSFQKLPGPFLVVTPLSTL--EHWRREINEWTDMNVVVYLGTKENRQLIQHYEWFY 745

Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT 216
           L +    I  +       T  E     +             DEA    +     +    T
Sbjct: 746 LNKDEKEISKQIKFHALITTYEMIMSDYEILSQIRWQVTVVDEAQRLKNKS-SKLNKTLT 804

Query: 217 ELNPNRFWIMTSNT 230
           E+      ++T   
Sbjct: 805 EIPSYHKILLTGTP 818


>gi|182419733|ref|ZP_02950974.1| ABC transporter, ATP-binding protein [Clostridium butyricum 5521]
 gi|237665701|ref|ZP_04525689.1| ABC transporter, ATP-binding protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182376470|gb|EDT74051.1| ABC transporter, ATP-binding protein [Clostridium butyricum 5521]
 gi|237658648|gb|EEP56200.1| ABC transporter, ATP-binding protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 571

 Score = 36.5 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 8/118 (6%)

Query: 68  SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127
           +N++ S     K AI    G GK+T+      WL+     ++  CI  +   +K+     
Sbjct: 348 NNLSFSLKPGEKLAIIGPTGSGKSTIA-----WLLLRFYDVNEGCILINGKNIKDIGIDC 402

Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185
           + K +S+ P +      S+  +         ++ + + S        ++ +  P+ F 
Sbjct: 403 LRKDISIAPQKPMLFSGSIDENIKWGKTNASDEEIKMAS---IKAGASFIDSMPEGFN 457


>gi|218186505|gb|EEC68932.1| hypothetical protein OsI_37627 [Oryza sativa Indica Group]
          Length = 1041

 Score = 36.5 bits (82), Expect = 6.6,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 60/227 (26%), Gaps = 19/227 (8%)

Query: 73  SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS---ETQLKNTLWAEVS 129
                   A+ A RG GK+      +   I+     +I   A S      L + +   ++
Sbjct: 272 DKSLRSTVALLAARGRGKSAALGLAIAGAIAAGY-SNIFVTAPSPENLKTLFDFVCKGMN 330

Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189
                    +     +            + +      + Y ++       +        +
Sbjct: 331 ALEYKEHLHYDVVKSADPELKKATIQINVYKQHRQTIQTYHLSDVGGKGLQSSNCYLKPH 390

Query: 190 TH-----GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244
            H        +  DEA+  P  I KS+LG +       F   T N     G    +  + 
Sbjct: 391 DHGKLSQVELLVIDEAAAIPLPIVKSLLGPYL-----VFLSSTVNGYEGTGRSLSLKLLQ 445

Query: 245 LEDWKRYQIDTRTVEGIDS-----GFHEGIISRYGLDSDVARIEILG 286
             + +                     +E I    G   +    ++L 
Sbjct: 446 QLESQSQPSAPSNGPNSSRLFKKIELNESIRYASGDPIESWLNDLLC 492


>gi|330828193|ref|YP_004391145.1| ATP-dependent RNA helicase DbpA [Aeromonas veronii B565]
 gi|328803329|gb|AEB48528.1| ATP-dependent RNA helicase DbpA [Aeromonas veronii B565]
          Length = 459

 Score = 36.5 bits (82), Expect = 6.8,   Method: Composition-based stats.
 Identities = 21/189 (11%), Positives = 44/189 (23%), Gaps = 10/189 (5%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLI-STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138
               A  G GKT      +L  +   R  +  + +  +          E+ +    LP+ 
Sbjct: 44  LIAKAKTGSGKTAAFGLGLLAKLNVNRLEVQALVLCPTRELADQVAQ-EIRRLARALPNV 102

Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198
               +                QS  +    +          +         +    +  D
Sbjct: 103 KLVTL--------CGGTPTAPQSATLSFGAHIAVGTPGRILKHLEQGTLELSGLKTLVLD 154

Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258
           EA    D+     +       P R   +  +     G       +     +         
Sbjct: 155 EADRMLDMGFGEDINRVISYAPERRQTLLFSATYPEGIAQMSRGVQRNPVEVSVESLHEG 214

Query: 259 EGIDSGFHE 267
             I+   +E
Sbjct: 215 SAIEQKLYE 223


>gi|15889610|ref|NP_355291.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58]
 gi|15157502|gb|AAK88076.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58]
          Length = 502

 Score = 36.5 bits (82), Expect = 6.8,   Method: Composition-based stats.
 Identities = 14/159 (8%), Positives = 42/159 (26%), Gaps = 20/159 (12%)

Query: 47  HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106
            ++ P   Q + +  +                     A  G GKT      ++ ++  + 
Sbjct: 33  GYTTPTPIQAKAIPLLLEG------------RDLIGLAQTGTGKTAAFGLPIIEMLMKQA 80

Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSG--WYAELLEQSMGI 164
                    +    +  + A   + ++ +       ++   L  +     A + +Q + +
Sbjct: 81  D------RPANRTTRTLILAPTRELVNQIGDNLRSFVKKTPLRINQVVGGASINKQQLQL 134

Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203
           +     +                  +    +  DEA   
Sbjct: 135 EKGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQM 173


>gi|255947606|ref|XP_002564570.1| Pc22g05360 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591587|emb|CAP97824.1| Pc22g05360 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1667

 Score = 36.5 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 35/120 (29%), Gaps = 7/120 (5%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKTT  A ++        G S++  + + T + N L       + +L      ++   
Sbjct: 1166 GTGKTTTIAHII--RALVAQGKSVLLTSYTHTAVDNILLKIRDDDIRVLRIGATAKVHPD 1223

Query: 147  --SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
                       +   + +    +   +   T      + F             DEAS   
Sbjct: 1224 VQEFADLAAIPKSTIEELKDSYEKPQVVATTCLGVNHNIFNQ---RIFDYCIVDEASQIT 1280


>gi|154292679|ref|XP_001546910.1| hypothetical protein BC1G_14724 [Botryotinia fuckeliana B05.10]
 gi|150845806|gb|EDN20999.1| hypothetical protein BC1G_14724 [Botryotinia fuckeliana B05.10]
          Length = 1615

 Score = 36.5 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 37/118 (31%), Gaps = 3/118 (2%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKTT  A ++        G S++  + + T + N L       + +L      ++   
Sbjct: 1099 GTGKTTTIAHII--RALVSQGKSVLLTSYTHTAVDNILLKLRDDSIPILRLGTKAKIHPD 1156

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
             +      A   +++M      +  T    +          +         DEAS   
Sbjct: 1157 -VQEFAKLAVDPKETMEEIRSVWHDTPIIATSCLGINHPIFNERTFDYCIVDEASQIT 1213


>gi|116180036|ref|XP_001219867.1| predicted protein [Chaetomium globosum CBS 148.51]
 gi|88184943|gb|EAQ92411.1| predicted protein [Chaetomium globosum CBS 148.51]
          Length = 281

 Score = 36.5 bits (82), Expect = 7.0,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 26/85 (30%), Gaps = 11/85 (12%)

Query: 14 ELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNS 73
           ++ ++   E       ++   F W      LE   +         +A +          
Sbjct: 1  MVNSLVWSPEEA----KYLKAIFHWQEAEPSLEEERR-------RRQAEEDERKRQEERK 49

Query: 74 NPTIFKCAISAGRGIGKTTLNAWMM 98
              F+  +  GRG GKT +    +
Sbjct: 50 PAGEFRVLVIGGRGTGKTAILTRSI 74


>gi|330942276|ref|XP_003306133.1| hypothetical protein PTT_19173 [Pyrenophora teres f. teres 0-1]
 gi|311316527|gb|EFQ85773.1| hypothetical protein PTT_19173 [Pyrenophora teres f. teres 0-1]
          Length = 1673

 Score = 36.5 bits (82), Expect = 7.0,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 35/118 (29%), Gaps = 3/118 (2%)

Query: 87   GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
            G GKTT  A ++        G S++  + + T + N L       + +L      ++   
Sbjct: 1142 GTGKTTTIAHII--RTLVAKGKSVLLTSYTHTAVDNILLKIRDDKIGILRLGAAKKIHP- 1198

Query: 147  SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204
             +          + S+    + +       +          +         DEAS   
Sbjct: 1199 EVREFATLGAEPKDSVEELERSWMEPPVVATTCLTINHPLFNRRVFDYCIVDEASQIT 1256


>gi|172035718|ref|YP_001802219.1| cob(I)alamin adenosyltransferase [Cyanothece sp. ATCC 51142]
 gi|171697172|gb|ACB50153.1| cob(I)alamin adenosyltransferase [Cyanothece sp. ATCC 51142]
          Length = 224

 Score = 36.5 bits (82), Expect = 7.2,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 42/117 (35%), Gaps = 3/117 (2%)

Query: 31  FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90
           F+     W IK     + S P ++Q +     ++        S        ++ G G GK
Sbjct: 9   FLFIKTDWLIKMTTDTNLS-PEQYQQKMQRRKEIQEKRLAEASQEKGL-IIVNTGNGKGK 66

Query: 91  TTLNAWMMLWLISTRPGMSII-CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           TT    M++  +     ++I+  I  +    +  + ++    L  L     F  ++ 
Sbjct: 67  TTAALGMVVRSLGHGFRVAIVQFIKGAWEPAEKAVLSQWENQLEFLAMGEGFTWETQ 123


>gi|329768424|ref|ZP_08259916.1| hypothetical protein HMPREF0428_01613 [Gemella haemolysans M341]
 gi|328836986|gb|EGF86631.1| hypothetical protein HMPREF0428_01613 [Gemella haemolysans M341]
          Length = 499

 Score = 36.5 bits (82), Expect = 7.3,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 58/212 (27%), Gaps = 18/212 (8%)

Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF--VGPHNTHGMAV 195
             W+   + SL  + W       + G  + +  +    Y       +             
Sbjct: 117 NAWYYYNNGSLVVNKWVGNYWLGADGRMATNSWVDNNRYYVGTDGAWVKDAKRPEEKKQG 176

Query: 196 FNDEASGTPDIINKSILGFFTELN-PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254
           +  EA+        +I G          +W+        N W  +       D    +  
Sbjct: 177 WVKEANTW---FYYNIDGTLARNKWAGNYWLGADGRMATNSWVDNNRYYVGNDGAWVKDA 233

Query: 255 TRTVEGIDSGFHEGI--ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE-------- 304
            R  E   +G+ +       Y  D  +AR +  G +          +++++         
Sbjct: 234 KRQ-EEKKTGWVKEANTWYYYNTDGTLARNKWAGNYWLGVDGKMATNSWVDNGRYYVGSN 292

Query: 305 -AMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335
            A  ++A  D      +  D    G D   V 
Sbjct: 293 GAWVKDASRDKNTKRAIFLDPGHGGSDSGAVA 324


>gi|331090179|ref|ZP_08339067.1| phage terminase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330402125|gb|EGG81697.1| phage terminase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 533

 Score = 36.5 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 42/330 (12%), Positives = 87/330 (26%), Gaps = 57/330 (17%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           KG       +   WQ + +  +      N      T +   I   +  GK+ L A + L 
Sbjct: 38  KGTWAGKPFELIDWQEQIIRDLFGVLKPNGYRQFNTAY---IEIPKKQGKSELAAAVALL 94

Query: 101 LISTRPGMS--IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
           L+         +   A    Q K  ++      +   P        +LS       ++  
Sbjct: 95  LLCGDGEERAEVYGCAADRNQAK-IVFDVAVDMVRFCP--------ALSKRVKILESQKK 145

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTE 217
              +  +S +  ++               H  +   V  DE    P+  +   +L    +
Sbjct: 146 ITYLPTNSSYQVLSA---------DVANKHGFNTHGVIFDELHTQPNRKLFDVMLQGSGD 196

Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPLED-----------WKRYQIDTRTVEGIDSGFH 266
                 + + +             +    D           +          +  D    
Sbjct: 197 ARMQPLYFLITTAGNDTNSICYEVHQKAIDIAEGRKVDPTFYSVIYGAAEDEDWTDPEVW 256

Query: 267 E-------------------GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
           +                       +   + +  R   L Q+ +Q V  ++P    +    
Sbjct: 257 KKANPSLGITVGIDKVKAACESAQQNPGEENAFRQLRLNQWVKQSV-RWMPMEKWDVCAF 315

Query: 308 REAIDDLYAPLIM-GCDIAGEGGDKTVVVF 336
             + DDL   +   G D++    D T  V 
Sbjct: 316 PVSEDDLEGRICYGGLDLSST-TDITAFVL 344


>gi|217966247|ref|YP_002351925.1| phage terminase, large subunit, pbsx family [Listeria monocytogenes
           HCC23]
 gi|217335517|gb|ACK41311.1| phage terminase, large subunit, pbsx family [Listeria monocytogenes
           HCC23]
 gi|307572148|emb|CAR85327.1| bacteriophage terminase large subunit [Listeria monocytogenes L99]
          Length = 443

 Score = 36.5 bits (82), Expect = 7.5,   Method: Composition-based stats.
 Identities = 31/258 (12%), Positives = 71/258 (27%), Gaps = 32/258 (12%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
                GR   K+++ +  ++      P  +++C+      L  +++ ++   L  +    
Sbjct: 36  IIAKGGRSSMKSSVISLKLVEKKMANPQSNMVCLRKVANTLYKSVYQQIKWALYEMGVAD 95

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND- 198
            F      +             +               +      +     +  A++ + 
Sbjct: 96  QFNFGKSPM------------EIIHKKWGTGFYFSGCDDPAKLKSMKIPVGYVSALWFEE 143

Query: 199 --EASGTPDIINKSILGFFTELNPNRFWIMTS----NTRRLNGWFYDIFNIPL---EDWK 249
             E SG  DI    +   F   +      +T+    N  R    + + +       +D+ 
Sbjct: 144 LAEFSGVTDI--DVVEDTFIREDLPDNQEVTTYMSFNPPRNPYEWVNEYVDNRRSDDDYL 201

Query: 250 RYQIDT--RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
            +           +     + I      D D  R   LG+      +N    N  +    
Sbjct: 202 IHHTTYLNDEKGFLSKQIIKKIEKYKKNDFDYYRWMYLGE-VIGLGDNVYNMNLFQSLN- 259

Query: 308 REAIDDLYAPLIMGCDIA 325
                     LI+  D A
Sbjct: 260 ---AIPADDRLIL-IDFA 273


>gi|126461416|ref|YP_001042530.1| phage terminase [Rhodobacter sphaeroides ATCC 17029]
 gi|126103080|gb|ABN75758.1| phage Terminase [Rhodobacter sphaeroides ATCC 17029]
          Length = 583

 Score = 36.5 bits (82), Expect = 7.6,   Method: Composition-based stats.
 Identities = 38/312 (12%), Positives = 78/312 (25%), Gaps = 52/312 (16%)

Query: 78  FKCAISAGRGIGKTTLNAWMMLWLISTRPG--MSIICIANSETQLKNTLWAEVSKWLSML 135
            +  I  G+G GK+ L   + L+ +         +   A    Q +  L+ +    +   
Sbjct: 94  RRAYIEQGKGNGKSPLAGGIGLYGMMADREAGAQVYAAAAKMDQAR-ILFGDAVSMVRQS 152

Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195
           P      +    + P+G         +         T   +     DT           V
Sbjct: 153 P------LLESRITPTGVNPVNNLADLR--------TGSFFRPLGRDTGKTGSGLRPHFV 198

Query: 196 FNDEASGTP-DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP---------L 245
             DE    P     + +   F         ++T++    N   ++               
Sbjct: 199 LLDELHEHPSRDTLEMLERGFKFRRQPLLLMITNSGSDRNSVCWEEHVHAVAVAHGEVED 258

Query: 246 EDWKRYQIDTRT--------------VEGIDSGFHEGIISRYGLDSDVARIEILGQ---- 287
           +    +                       +     E  ++     +     +  G     
Sbjct: 259 DTTFSFVCSLDEGDDPLNDPSCWKKANPLLGVTLSEAYLADVAAQARAIPGKANGILRLH 318

Query: 288 --FPQQEVNNFIPHNYIEEAMSREAIDD--LYAPLIMGCDIAGEGGDKT--VVVFRRGNI 341
                     +I     E         D        +G D+     D T   +VFR G  
Sbjct: 319 FCVWTDAEAAWIARETWEACEDASLRLDDFEGEDAWVGLDLGAT-KDLTWRALVFRDGMT 377

Query: 342 IEHIFDWSAKLI 353
            E + + + ++I
Sbjct: 378 EERVDEATGQVI 389


>gi|311742723|ref|ZP_07716532.1| helicase [Aeromicrobium marinum DSM 15272]
 gi|311314351|gb|EFQ84259.1| helicase [Aeromicrobium marinum DSM 15272]
          Length = 547

 Score = 36.5 bits (82), Expect = 7.7,   Method: Composition-based stats.
 Identities = 18/157 (11%), Positives = 47/157 (29%), Gaps = 10/157 (6%)

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126
            +N+ ++   + +  +  G G GKT L       L ++  G+ +  ++ +    +     
Sbjct: 212 QANILDATQALTRVEVRGGAGSGKTWLAVEQARRLAAS--GLRVALLSYTRGLSEWM--- 266

Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186
              +  + +P      + +     + W  ++   +         +               
Sbjct: 267 -RRRVSTFVPTDRPAYVGTFHDIGAMWGHQVDRDNNDQHFWEVELPATLLDL----AGRQ 321

Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223
           P      A+  DEA    D     +L      +   +
Sbjct: 322 PVAELFDAIVIDEAQDFADDWWPVVLEALKYEDDRLY 358


>gi|313107129|ref|ZP_07793329.1| phage uncharacterized protein [Pseudomonas aeruginosa 39016]
 gi|310879831|gb|EFQ38425.1| phage uncharacterized protein [Pseudomonas aeruginosa 39016]
          Length = 550

 Score = 36.5 bits (82), Expect = 7.9,   Method: Composition-based stats.
 Identities = 34/303 (11%), Positives = 74/303 (24%), Gaps = 25/303 (8%)

Query: 22  AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81
                 ++ F   +FP  +K             +   +    ++        +P     A
Sbjct: 42  ERASADYEYFARTYFPHYVK-------------RGNALLHDYLYKRLPELVDHPDGQHEA 88

Query: 82  ISAGRGIGKTTLNA-WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140
           I+A RG  K+TL +   ++W + T      + I ++  Q    L A  ++          
Sbjct: 89  IAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNPRLAMD 148

Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200
           F   +           +      +         R      P                DE 
Sbjct: 149 FPQGAGKGRVWQVGTIVTANDAKVQVFGSGKRMRGLR-HGPHRPDLVIGDDLEN---DEN 204

Query: 201 SGTP------DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254
             +P      +   K  +      +     I+       +     +   PL   ++++  
Sbjct: 205 VRSPEQRDKLENWLKKTVLSLGSADDTMDVIIIGTILHYDSVLSRLLKNPLWKRRKFKAI 264

Query: 255 TRTVEGIDS-GFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313
                 +D     E ++     +   A      +    E    I     +          
Sbjct: 265 IEWPHRMDLWEKWEELLLNSDDEGAAALAFYQERVAAMEDGAIICWPDGQPLYKLMVKRA 324

Query: 314 LYA 316
              
Sbjct: 325 RDG 327


>gi|298248271|ref|ZP_06972076.1| NERD domain protein [Ktedonobacter racemifer DSM 44963]
 gi|297550930|gb|EFH84796.1| NERD domain protein [Ktedonobacter racemifer DSM 44963]
          Length = 551

 Score = 36.5 bits (82), Expect = 7.9,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 52/166 (31%), Gaps = 10/166 (6%)

Query: 64  VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123
                 + +      + AIS   G GKT +       L   + G S++    +       
Sbjct: 217 TQEQFQLLDFLRHHRRVAISGCAGSGKTLMAVEKAKKL--HQQGFSVLLTCYNYNLA--- 271

Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183
             A + + ++  P+ H      L  H +     L E+++   S+ Y  T           
Sbjct: 272 --AYLRESVNDYPNIHVHHFHGLCSHLAKEAGLLNEKALQSPSQDYYNTTLPSLLFEAID 329

Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229
            V        A+  DE     +    ++     + +   F+I   N
Sbjct: 330 RVDWR---VDAIVIDEGQDFREEWELALQYLLHDPDNGIFYIFYDN 372


>gi|189218339|ref|YP_001938981.1| PHP family phosphoesterase fused to chromosome segregation ATPase
           [Methylacidiphilum infernorum V4]
 gi|189185197|gb|ACD82382.1| PHP family phosphoesterase fused to chromosome segregation ATPase
           [Methylacidiphilum infernorum V4]
          Length = 930

 Score = 36.1 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 35/145 (24%), Gaps = 14/145 (9%)

Query: 81  AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL-----------WAEVS 129
           AI  GRG GK+TL     L +   R       +AN   + +N              A+++
Sbjct: 312 AIIGGRGTGKSTLV--EFLRIALQREDELPAALANDFQKYRNVYQSRDDNGLLTDQADLT 369

Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189
            +      R                 +        D              +   F    +
Sbjct: 370 VYYRKDRTRFRIHWSPNQT-AVPIEVQNENGDWQSDPGDVAQRFPVRIYSQKQIFEVAKD 428

Query: 190 THGMAVFNDEASGTPDIINKSILGF 214
              +    DEA        K     
Sbjct: 429 PQELLRIVDEAREVGRPSWKEDWNA 453


>gi|296131145|ref|YP_003638395.1| NERD domain protein [Cellulomonas flavigena DSM 20109]
 gi|296022960|gb|ADG76196.1| NERD domain protein [Cellulomonas flavigena DSM 20109]
          Length = 555

 Score = 36.1 bits (81), Expect = 8.0,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 41/160 (25%), Gaps = 13/160 (8%)

Query: 67  HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126
            ++       + +  +  G G GKT L              ++++C +     L   L  
Sbjct: 213 QAHAMRHLDAVRRVHVVGGAGTGKTWLALEHARRRARAGERVALMCYS---RGLARYLER 269

Query: 127 EVSKW-LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185
             + W     P       +      +    +                 R   E       
Sbjct: 270 TCATWPARERPAYVGLFHELPVRWGAAPGDDADPTDWE---------ERLPRELGDLAAS 320

Query: 186 GPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225
              +    AV  DEA    D    ++L    + +  R  +
Sbjct: 321 RVPDELFDAVVVDEAQDFGDAWWPALLRCLRDPDAGRLAV 360


>gi|227498314|ref|ZP_03928464.1| prophage protein [Acidaminococcus sp. D21]
 gi|226903776|gb|EEH89694.1| prophage protein [Acidaminococcus sp. D21]
          Length = 530

 Score = 36.1 bits (81), Expect = 8.0,   Method: Composition-based stats.
 Identities = 23/268 (8%), Positives = 63/268 (23%), Gaps = 31/268 (11%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT-TLNAWMMLWLISTRPGMSII 111
            WQ + +  +      N      T +   I   +  GK+    A  +  L +     + +
Sbjct: 48  PWQEQIVRDLFGIVKKNGKRQFLTAY---IEIPKKNGKSELAAAIALYLLYADNEPSAEV 104

Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171
             A  +    + ++    + + M P                      +            
Sbjct: 105 YGAACDRNQASIVFDVARQMVEMSP----------------ALMRRSKIRSAGKRIINYR 148

Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTSNT 230
               Y     +T    H  +   +  DE    P+  +   +     +      + + +  
Sbjct: 149 NAGFYQVLSAETG-TKHGLNVSGLVFDEIHAQPNRKLYDVLTKGSGDAREQPLFFIITTA 207

Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290
                      +    D    +   +        +       +  +++  +       P 
Sbjct: 208 GNDKNSICYELHTKALDLMAGRK--KDATFYPVVYGLKPEEDWTDEANWYKA-----NPS 260

Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPL 318
                 I  + + EA      +     +
Sbjct: 261 LGHT--IQIDRVREAYRTAVENPAEENV 286


>gi|116205519|ref|XP_001228570.1| hypothetical protein CHGG_10643 [Chaetomium globosum CBS 148.51]
 gi|88176771|gb|EAQ84239.1| hypothetical protein CHGG_10643 [Chaetomium globosum CBS 148.51]
          Length = 1339

 Score = 36.1 bits (81), Expect = 8.0,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 34/124 (27%), Gaps = 6/124 (4%)

Query: 33   MRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTT 92
                 W  K  PL      +  Q +  + V  H  +   N  P   +  I  G G GK+ 
Sbjct: 896  YVITTW--KRCPLAARDTLNTQQRQVYDTVMRHYRAKNENRQPPPLRLQIDGGGGTGKSY 953

Query: 93   LNAWMMLWL-ISTRPGMSIICI---ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148
            +   +   L         +  I   A +           +   L +    ++  +     
Sbjct: 954  MVKVISSHLQAEAASYGRVSPIVRAAPTGVASNQIGGQTLHSLLRLPVDGNYRSLSETPT 1013

Query: 149  HPSG 152
              + 
Sbjct: 1014 TLNA 1017


>gi|50425355|ref|XP_461271.1| DEHA2F21208p [Debaryomyces hansenii CBS767]
 gi|49656940|emb|CAG89662.1| DEHA2F21208p [Debaryomyces hansenii]
          Length = 1046

 Score = 36.1 bits (81), Expect = 8.1,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 38/125 (30%), Gaps = 10/125 (8%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            A++AGRG GK+      +   +S     +I   + S   LK  L+  V K    L +  
Sbjct: 279 VALTAGRGRGKSAALGIAIAAAVSHGY-SNIFVTSPSPENLKT-LFEFVFKGFDALGYTE 336

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +   +      +   ++   +    +                           V  DE
Sbjct: 337 HMDYDIIQSTNPSFNKAIVRVDIKRGHRQTIQYISPNDNHVLGQAE--------LVIIDE 388

Query: 200 ASGTP 204
           A+  P
Sbjct: 389 AAAIP 393


>gi|317132776|ref|YP_004092090.1| Terminase [Ethanoligenens harbinense YUAN-3]
 gi|315470755|gb|ADU27359.1| Terminase [Ethanoligenens harbinense YUAN-3]
          Length = 535

 Score = 36.1 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 39/330 (11%), Positives = 84/330 (25%), Gaps = 57/330 (17%)

Query: 41  KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100
           KG       +   WQ + +  +      N      T +   +   +  GK+ L A + L 
Sbjct: 40  KGTWAGKPFELIDWQEQIVRDLFGVIKENGYRQFNTAY---VEIPKKQGKSELAAAIALL 96

Query: 101 LISTRPGMS--IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158
           L          +   A    Q K  ++      +   P        +LS           
Sbjct: 97  LTCGDNEERAEVYGCAADRNQAK-IVFDVAVDMVRFCP--------ALSKRVKI------ 141

Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTE 217
              +    +   +   ++ +         H  +   V  DE    P+  +   +     +
Sbjct: 142 ---LESQKRLEYLPTHSFYQVLSADVANKHGFNTHGVIFDELHTQPNRKLFDVMTKGSGD 198

Query: 218 LNPNRFWIMTSNT-RRLNGWFYDIFNIPLE---------DWKRYQIDTRTVEGIDSGFHE 267
                 + + +      +   Y+     L+          +          E        
Sbjct: 199 ARMQPLFFLITTAGNDTHSICYEQHEKALDIMSGRKHDPTFYPVIFGADESEDWTDPQVW 258

Query: 268 --------------------GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307
                                   +   + +  R   L Q+ +Q V  ++P +  +    
Sbjct: 259 KKANPSLGITVGIDKVKAACESAKQNPGEENSFRQLRLNQWVKQSV-RWMPMDKWDACAF 317

Query: 308 REAIDDLYAPLIM-GCDIAGEGGDKTVVVF 336
               D+L   +   G D++    D T  V 
Sbjct: 318 PVNEDELEGRVCYGGLDLSST-TDITAFVL 346


>gi|261493462|ref|ZP_05989985.1| hypothetical protein COK_1868 [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261495339|ref|ZP_05991790.1| hypothetical protein COI_1114 [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261309016|gb|EEY10268.1| hypothetical protein COI_1114 [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310865|gb|EEY12045.1| hypothetical protein COK_1868 [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 541

 Score = 36.1 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 57/165 (34%), Gaps = 19/165 (11%)

Query: 23  ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSN---VNNSNPTIFK 79
           + V  F+ FV  +F              PH  + E    +  +   N     +      +
Sbjct: 44  DPVHGFEYFVQAYF--------------PHYVRSEHKSQLHHYLFENLPLSVSDLSKSVR 89

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA-NSETQLKNTLWAEVSKWLSMLPHR 138
            AI+A RG  K+T+   +       R     I IA +++ Q  + L A   +  S    R
Sbjct: 90  QAIAAPRGEAKSTICTQLFPLWCLVRDLKRYIIIAMDTKEQAYSMLEAIKVEIESNPRLR 149

Query: 139 HWF-EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182
             F E+    +  +G      +Q +        +  R +   RPD
Sbjct: 150 IDFPEVAQGKVWRAGVIMTAKKQKVEAVGAGQKLRGRRHGAYRPD 194


>gi|319757813|gb|ADV69755.1| hypothetical protein SSUJS14_0664 [Streptococcus suis JS14]
          Length = 530

 Score = 36.1 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 38/316 (12%), Positives = 78/316 (24%), Gaps = 53/316 (16%)

Query: 53  RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112
            WQ + +  +      + N    T +   I   +  GK+ L A + L+L+          
Sbjct: 48  PWQEQIVRDLFGIVKEDGNRQFLTAY---IEIPKKNGKSELAAAIALYLLYADNEA---- 100

Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172
            A       +   A +            F++    +  S    +  +             
Sbjct: 101 SAEVYGAACDRNQASIV-----------FDVAKQMVQMSRPLEKRSKIMGATKRIVNYTN 149

Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT-- 230
              Y     +T    H  +   +  DE    P+     +L   +     +       T  
Sbjct: 150 AGFYQVLSAETG-TKHGLNVSGLVFDEIHAQPNRHLYDVLTKGSGDAREQPLFFIITTAG 208

Query: 231 RRLNGWFYDIFNIP----------------------LEDW----KRYQIDTRTVEGIDSG 264
              N   Y++                           +DW       + +      I   
Sbjct: 209 TDRNSICYELHTKALDILNGRKKDTSFYPVVYGLSDEDDWNDEANWLKANPSLGHTIGID 268

Query: 265 FHEGIISRYGLDS---DVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLIM 320
                  +   +    +V +   L  +    V  +IP +   +     +           
Sbjct: 269 RVREAYQQALDNPAEENVFKQLRLNMWTSSSV-AWIPEHVYAKGNDPIQYESLKGRSCYA 327

Query: 321 GCDIAGEGGDKTVVVF 336
           G D++    D T  V 
Sbjct: 328 GLDLSST-SDITAFVL 342


>gi|50546857|ref|XP_500898.1| YALI0B14751p [Yarrowia lipolytica]
 gi|49646764|emb|CAG83149.1| YALI0B14751p [Yarrowia lipolytica]
          Length = 1023

 Score = 36.1 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 37/125 (29%), Gaps = 10/125 (8%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            A++AGRG GK+      +   +      +I   + S   LK  L+  + K    L +  
Sbjct: 280 VALTAGRGRGKSAALGVAIAAAVGQGY-SNIFITSPSPENLKT-LFEFIFKGFDALGYEE 337

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +          +   ++  ++    +                           V  DE
Sbjct: 338 HVDYDIQQSTNPAFNKAIVRVNIFKSHRQTIQYIVPGDSHVLGQAE--------LVVIDE 389

Query: 200 ASGTP 204
           A+  P
Sbjct: 390 AAAIP 394


>gi|229589634|ref|YP_002871753.1| putative ATP-binding protein [Pseudomonas fluorescens SBW25]
 gi|229361500|emb|CAY48376.1| putative ATP-binding protein [Pseudomonas fluorescens SBW25]
          Length = 663

 Score = 36.1 bits (81), Expect = 8.5,   Method: Composition-based stats.
 Identities = 20/163 (12%), Positives = 51/163 (31%), Gaps = 11/163 (6%)

Query: 45  LEHFSQPH-RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS 103
           L +F  P   W  +    +         + +  +    ++   G GKT + A     L  
Sbjct: 186 LRYFLDPQQEWASKLDLDLPDEQTEMAGDFSVRLIN-GVA---GSGKTLIAASRAYILAR 241

Query: 104 TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163
             P   ++ + ++   +K+        +      ++   M +LS     W + L ++++ 
Sbjct: 242 KFPDQQVLMLIHNVPVVKDLKHRLQRVYGE--IPKNLTIMTALSWISRQWRS-LFKETLK 298

Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
           +                 +      + + +    DE +   D 
Sbjct: 299 MPKFTTEAIGLIQHFRDTEYRELKPDNNQLL---DEFNFINDN 338


>gi|227504519|ref|ZP_03934568.1| CRISPR-associated helicase Cas3 family protein protein
           [Corynebacterium striatum ATCC 6940]
 gi|227198839|gb|EEI78887.1| CRISPR-associated helicase Cas3 family protein protein
           [Corynebacterium striatum ATCC 6940]
          Length = 792

 Score = 36.1 bits (81), Expect = 8.5,   Method: Composition-based stats.
 Identities = 39/332 (11%), Positives = 77/332 (23%), Gaps = 37/332 (11%)

Query: 8   DQKLEQELHEML--------MHAE--CVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLE 57
           D + EQ + + L         +A          +    F W            P  W   
Sbjct: 108 DCEQEQRVQDGLASIGFAGLWNASKTMKPDVAEYFAAAFGW------------PDEWDPR 155

Query: 58  FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117
            ++          + ++       I A  G GKT                  ++  A + 
Sbjct: 156 PIQQRAFALARGSDGASLH----IIEASTGSGKTEAALAAAHAYAEKHGCHGVVFAAPTM 211

Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177
               N L+  V +W   +          L+   +    E     +   S   +      +
Sbjct: 212 ATA-NGLFNRVIQWAQNVVPAGDTTAAYLAHSMNSLVKEYQRLRVKGVSTDTSGNGSVTA 270

Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237
            E   +      ++      D       +  +S       L      ++           
Sbjct: 271 MEWFASPKKGLLSNFAVSTVD---QVLMMALQSRHNMLRHLGLAGKVVII-----DEVHA 322

Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297
           YD F     +     +    V  I       +  +  L      +     +         
Sbjct: 323 YDSFTSAYLESTLKWLAWYEVPVILLSATLPVDKKESLVQAYRSVLGEEDWESVSDG--Y 380

Query: 298 PHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329
           P   I +A           P  +  D++  G 
Sbjct: 381 PLLTIADANGVREESLDIGPNEIHADVSVIGD 412


>gi|255282163|ref|ZP_05346718.1| domain protein, SNF2 family [Bryantella formatexigens DSM 14469]
 gi|255267111|gb|EET60316.1| domain protein, SNF2 family [Bryantella formatexigens DSM 14469]
          Length = 454

 Score = 36.1 bits (81), Expect = 8.8,   Method: Composition-based stats.
 Identities = 18/165 (10%), Positives = 42/165 (25%), Gaps = 7/165 (4%)

Query: 87  GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146
           G GKT      M          +++ IA +      ++W +     +   +     +   
Sbjct: 20  GCGKTLTAIATMGAAYEMGAIKTVLIIAPTSVC---SVWPKEFDEYADFKYNVAVLLGDK 76

Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206
               +   +                   T+ E   +  +  H      +  DE+    + 
Sbjct: 77  QKRLAALRSLAAFP-FEALRVAVINYESTWREGIFEALLDWH---PDMIICDESQRIKEP 132

Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY 251
             K         +  ++ ++ S T   N            D   +
Sbjct: 133 KAKQSRAMHELGDAAKYKLILSGTPIQNNAIDLYSQYRFLDPTVF 177


>gi|302851336|ref|XP_002957192.1| hypothetical protein VOLCADRAFT_98273 [Volvox carteri f.
           nagariensis]
 gi|300257442|gb|EFJ41690.1| hypothetical protein VOLCADRAFT_98273 [Volvox carteri f.
           nagariensis]
          Length = 1484

 Score = 36.1 bits (81), Expect = 8.9,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 36/128 (28%), Gaps = 7/128 (5%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            A++A RG GK+      +   ++     +I   A S   L+                R 
Sbjct: 283 VALTASRGRGKSAALGLAIAGALALGY-SNIFVTAPSPENLRTLFEFVFK---HPYSTRK 338

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG---MAVF 196
           +  + SL       Y  +   +         +       +        H+        + 
Sbjct: 339 YQGLDSLEYKEHIDYDLVESTNPSFGKAIVRVNVFRSHRQTVQYIQPQHHAKLAQAELLV 398

Query: 197 NDEASGTP 204
            DEA+  P
Sbjct: 399 IDEAAAIP 406


>gi|160873099|ref|YP_001557104.1| P-type conjugative transfer ATPase TrbB [Shewanella baltica OS195]
 gi|160858621|gb|ABX51844.1| P-type conjugative transfer ATPase TrbB [Shewanella baltica OS195]
          Length = 310

 Score = 36.1 bits (81), Expect = 8.9,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%)

Query: 79  KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116
              I  G G GKTTL   ++  ++       I+ + ++
Sbjct: 140 NILIVGGTGSGKTTLANALIDSMVLHNKDERIVIMEDT 177


>gi|71409165|ref|XP_806942.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70870830|gb|EAN85091.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 1043

 Score = 36.1 bits (81), Expect = 8.9,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 10/125 (8%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
           C ++AGRG GK+          ++     +I C A S   L  T +  V + L  L +  
Sbjct: 305 CVVTAGRGRGKSAALGLAAAGALAQGY-SNIFCTAPSPENL-QTFFEFVIRGLKELGYTE 362

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             E +++      +   ++  ++    + +  T +  S      F             DE
Sbjct: 363 RTEFEAMQSTNIEFSKCIVRINLF---REHRQTVQYISPHDASKFAQA-----ELAIIDE 414

Query: 200 ASGTP 204
           A+  P
Sbjct: 415 AAAIP 419


>gi|71657697|ref|XP_817360.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70882546|gb|EAN95509.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 1043

 Score = 36.1 bits (81), Expect = 9.0,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 10/125 (8%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
           C ++AGRG GK+          ++     +I C A S   L  T +  V + L  L +  
Sbjct: 305 CVVTAGRGRGKSAALGLAAAGALAQGY-SNIFCTAPSPENL-QTFFEFVIRGLKELGYTE 362

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             E +++      +   ++  ++    + +  T +  S      F             DE
Sbjct: 363 RTEFEAMQSTNIEFSKCIVRINLF---REHRQTVQYISPHDASKFAQA-----ELAIIDE 414

Query: 200 ASGTP 204
           A+  P
Sbjct: 415 AAAIP 419


>gi|302309556|ref|NP_987012.2| AGR346Cp [Ashbya gossypii ATCC 10895]
 gi|299788414|gb|AAS54836.2| AGR346Cp [Ashbya gossypii ATCC 10895]
          Length = 1058

 Score = 36.1 bits (81), Expect = 9.7,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 10/125 (8%)

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139
            A++AGRG GK+      +   +S     ++   + S   LK  L+  + K    L ++ 
Sbjct: 292 VALTAGRGRGKSAALGIALAAAVSHGY-SNMFVTSPSPENLKT-LFEFIFKGFDALGYQE 349

Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199
             +   +      +   ++   +    +                           V  DE
Sbjct: 350 HIDYDIIQSTNPAFNKAIVRVDIKRAHRQTIQYILPGDSHVLGQAE--------LVVIDE 401

Query: 200 ASGTP 204
           A+  P
Sbjct: 402 AAAIP 406


>gi|254361337|ref|ZP_04977479.1| hypothetical protein MHA_0927 [Mannheimia haemolytica PHL213]
 gi|153092838|gb|EDN73875.1| hypothetical protein MHA_0927 [Mannheimia haemolytica PHL213]
          Length = 541

 Score = 36.1 bits (81), Expect = 9.7,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 57/165 (34%), Gaps = 19/165 (11%)

Query: 23  ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSN---VNNSNPTIFK 79
           + V  F+ FV  +F              PH  + E    +  +   N     +      +
Sbjct: 44  DPVHGFEYFVQAYF--------------PHYVRSEHKSQLHHYLFENLPLSVSDLSKSVR 89

Query: 80  CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA-NSETQLKNTLWAEVSKWLSMLPHR 138
            AI+A RG  K+T+   +       R     I IA +++ Q  + L A   +  S    R
Sbjct: 90  QAIAAPRGEAKSTICTQLFPLWCLVRDLKRYIIIAMDTKEQAYSMLEAIKVEIESNPRLR 149

Query: 139 HWF-EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182
             F E+    +  +G      +Q +        +  R +   RPD
Sbjct: 150 IDFPEVAQGKVWRAGVIMTAKKQKVEAVGAGQKLRGRRHGAYRPD 194


>gi|242007312|ref|XP_002424485.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212507903|gb|EEB11747.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 669

 Score = 36.1 bits (81), Expect = 9.8,   Method: Composition-based stats.
 Identities = 24/240 (10%), Positives = 53/240 (22%), Gaps = 28/240 (11%)

Query: 46  EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105
            +FS P   Q     A+ V                   A  G GKT      +L  +  +
Sbjct: 173 MNFSHPTPIQC---AAIPVALLGRDICG---------CAATGTGKTAAYMLPILERLLYK 220

Query: 106 PGM-----SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160
           P        ++ +  +       +             +   +  ++ +  +    ++  Q
Sbjct: 221 PQGSLSITRVLVLVPTRELGVQVIQ----------VAKQLSKFTTIEIGLAVGGLDVKVQ 270

Query: 161 SMGIDSKHYTITCRTYSEERP-DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219
              +  +   +              +G        +  DEA    D      +       
Sbjct: 271 EAFLRKQPDIVIATPGRLIDHLKNSLGFSLDSIEILVLDEADRMLDEYFAEQMKEIVRQC 330

Query: 220 PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279
                 M  +                   K +    ++V          I      D + 
Sbjct: 331 SRTRQTMLFSATMTTAVEDLASVSLSNPVKIFVDSNQSVTNNLRQEFIRIRKGREGDKEA 390


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.305    0.111    0.282 

Lambda     K      H
   0.267   0.0342    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,792,388,956
Number of Sequences: 14124377
Number of extensions: 48835164
Number of successful extensions: 334500
Number of sequences better than 10.0: 4428
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 3797
Number of HSP's that attempted gapping in prelim test: 331766
Number of HSP's gapped (non-prelim): 5030
length of query: 367
length of database: 4,842,793,630
effective HSP length: 140
effective length of query: 227
effective length of database: 2,865,380,850
effective search space: 650441452950
effective search space used: 650441452950
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 81 (36.1 bits)