BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254781187|ref|YP_003065600.1| putative phage terminase, large subunit [Candidatus Liberibacter asiaticus str. psy62] (367 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|254781187|ref|YP_003065600.1| putative phage terminase, large subunit [Candidatus Liberibacter asiaticus str. psy62] gi|254040864|gb|ACT57660.1| putative phage terminase, large subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 367 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 367/367 (100%), Positives = 367/367 (100%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME Sbjct: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL Sbjct: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER Sbjct: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI Sbjct: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240 Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN Sbjct: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG Sbjct: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360 Query: 361 CPVGSSI 367 CPVGSSI Sbjct: 361 CPVGSSI 367 >gi|254781215|ref|YP_003065628.1| putative phage terminase, large subunit [Candidatus Liberibacter asiaticus str. psy62] gi|254040892|gb|ACT57688.1| putative phage terminase, large subunit [Candidatus Liberibacter asiaticus str. psy62] gi|317120680|gb|ADV02503.1| putative phage terminase large subunit [Liberibacter phage SC1] gi|317120824|gb|ADV02645.1| putative phage terminase large subunit [Candidatus Liberibacter asiaticus] Length = 511 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 252/359 (70%), Positives = 299/359 (83%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 M R + T+ + EQ+L +++ E LSF NFV+ FFPWG KG PLE FS P WQLEFME Sbjct: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 VD HC ++VNN NP +FK AISAGRGIGKTTLNAW++LWL+STRPG+S+IC+ANSETQL Sbjct: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 K TLWAEVSKWLS+LP++HWFEMQSLSLHP+ WY+++L S+GIDSKHY+ CRTYSEER Sbjct: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180 Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240 PDTFVG HNT+GMA+ NDEASGTPD+IN ILGF TE N NRFWIMTSN RRL+G FY+I Sbjct: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240 Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 FN PL+DWKR+QIDTRTVEGID FHEGII+RYGLDSDV R+E+ GQFPQQ++++FIP N Sbjct: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300 Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359 IEEA++RE D YAPLIMGCDIA EGGD TVVV RRG +IEH+FDWS ++ TN + Sbjct: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNK 359 >gi|317120722|gb|ADV02544.1| putative phage terminase large subunit [Liberibacter phage SC2] gi|317120783|gb|ADV02604.1| putative phage terminase large subunit [Candidatus Liberibacter asiaticus] Length = 516 Score = 358 bits (918), Expect = 8e-97, Method: Composition-based stats. Identities = 257/359 (71%), Positives = 302/359 (84%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 M R + T+ + EQ+L +++ E LSF NFV+ FFPWG KG PLE FS P WQLEFME Sbjct: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 VD HC ++VNN NP +FK AISAGRGIGKTTLNAW++LWL+STRPG+S+IC+ANSETQL Sbjct: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 K TLWAEVSKWLS+LP++HWFEMQSLSLHP+ WY+++L S+GIDSKHY+ CRTYSEER Sbjct: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180 Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240 PDTFVG HNT+GMA+ NDEASGTPD+IN ILGF TE N NRFWIMTSN RRL+G FY+I Sbjct: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240 Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 FN PL+DWKR+QIDTRTVEGID FHEGII+RYGLDSDV R+E+ GQFPQQ++++FIP Sbjct: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPQQ 300 Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359 YI EA+ R AI D YAPLIMGCDIAGEG DKTVVV RRGNIIE IFDWS +LI+ TN++ Sbjct: 301 YIVEALERVAIPDPYAPLIMGCDIAGEGEDKTVVVLRRGNIIERIFDWSGELIEVTNRK 359 >gi|315122902|ref|YP_004063391.1| putative phage terminase, large subunit [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496304|gb|ADR52903.1| putative phage terminase, large subunit [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 509 Score = 328 bits (841), Expect = 7e-88, Method: Composition-based stats. Identities = 262/351 (74%), Positives = 298/351 (84%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 M R + T + EQEL E++ + LSF NFV+R FPW L +FS+P RWQL+FME Sbjct: 1 MTRELPTKIEHEQELMELMFSDDIKLSFTNFVLRLFPWSEANTSLANFSRPRRWQLDFME 60 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 AVD C NV+N +P IFK A+SAGRGIGKTTLNAWMMLWLISTRPGMSI+C+ANSETQL Sbjct: 61 AVDTDCLFNVDNPDPKIFKGAVSAGRGIGKTTLNAWMMLWLISTRPGMSILCLANSETQL 120 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 K+TLWAEVSKWLSMLP++HWFEMQSLSLHP+ WYAE LE++ GIDSKHYTITCRTYSEER Sbjct: 121 KSTLWAEVSKWLSMLPNKHWFEMQSLSLHPAVWYAEALEKNFGIDSKHYTITCRTYSEER 180 Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240 PDTFVG HNT+GMA+FNDEASGTPD+IN SILGFFTE N NRFW+MTSN RRLNGWFYDI Sbjct: 181 PDTFVGHHNTYGMAIFNDEASGTPDVINTSILGFFTENNANRFWVMTSNPRRLNGWFYDI 240 Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 FN+PLEDW+R+QIDTRTVEGID FHE II+RYGLDSDV R+E+LGQFPQQ++N+FIP Sbjct: 241 FNVPLEDWQRFQIDTRTVEGIDPNFHENIIARYGLDSDVTRVEVLGQFPQQDINSFIPFY 300 Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 IEEA++RE I D YAPL+MGCDIAGEGGD TVVV RRG IEHIFDWS Sbjct: 301 RIEEALNREPIKDPYAPLVMGCDIAGEGGDNTVVVLRRGTNIEHIFDWSGL 351 >gi|315121940|ref|YP_004062429.1| putative phage terminase, large subunit [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495342|gb|ADR51941.1| putative phage terminase, large subunit [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 509 Score = 327 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 264/351 (75%), Positives = 298/351 (84%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 M R + T + EQEL E++ + LSF NFV+R FPW L +FS+P RWQL+FME Sbjct: 1 MTRELPTKIEHEQELMELMFSDDIKLSFTNFVLRLFPWSEANTSLANFSRPRRWQLDFME 60 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 AVD C NV+N +P IFK A+SAGRGIGKTTLNAWMMLWLISTRPGMSI+C+ANSETQL Sbjct: 61 AVDTDCLFNVDNPDPKIFKGAVSAGRGIGKTTLNAWMMLWLISTRPGMSILCLANSETQL 120 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 K+TLWAEVSKWLSMLP++HWFEMQSLSLHP+ WYAE LE++ GIDSKHYTITCRTYSEER Sbjct: 121 KSTLWAEVSKWLSMLPNKHWFEMQSLSLHPAVWYAEALEKNFGIDSKHYTITCRTYSEER 180 Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240 PDTFVG HNT+GMA+FNDEASGTPD+IN SILGFFTE N NRFW+MTSN RRL GWFYDI Sbjct: 181 PDTFVGHHNTYGMAIFNDEASGTPDVINTSILGFFTENNANRFWVMTSNPRRLKGWFYDI 240 Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 FN+PLEDW+R+QIDTRTVEGID FHEGIISRYGLDSDV R+E+LGQFPQQ++N+FIP Sbjct: 241 FNVPLEDWQRFQIDTRTVEGIDPSFHEGIISRYGLDSDVTRVEVLGQFPQQDINSFIPFY 300 Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 IEEA++RE I D YAPLIMGCDIAGEGGD TVVV RRG IEHIFDWS Sbjct: 301 RIEEALNREPIKDPYAPLIMGCDIAGEGGDNTVVVLRRGTNIEHIFDWSGL 351 >gi|309702815|emb|CBJ02146.1| putative terminase, large subunit [Escherichia coli ETEC H10407] Length = 493 Score = 286 bits (730), Expect = 5e-75, Method: Composition-based stats. Identities = 88/349 (25%), Positives = 154/349 (44%), Gaps = 18/349 (5%) Query: 6 STDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVH 65 + EQ + ++ A + + FPWG +G L H + P +WQ + + H Sbjct: 4 AAMSPEEQLVEDI---AGFTYDPLGYALYAFPWGEEGTELAHATGPRKWQADAFREIRDH 60 Query: 66 CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW 125 + P + A ++G GIGK+ + ++ W +ST ++ AN++ QL+ W Sbjct: 61 LQNPATRHQPIM--LARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTW 118 Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185 E+ KW ++ + WF + +++ + + K + +SE + F Sbjct: 119 PEIIKWSNLAITKEWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAFA 168 Query: 186 GPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244 G HN + V DEAS D++ + G T+ + W+ N R G F + F Sbjct: 169 GLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKY 228 Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE 304 WK QID+RTVEG + + + YG DSD ++ + G FP N FIP + Sbjct: 229 KHRWKCAQIDSRTVEGTNKEQLQKWVDDYGEDSDFVKVRVRGIFPDASENQFIPSGLTQP 288 Query: 305 AMSREAIDD--LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 A+ R +A +++G D + +G D V+ R+G + + +W Sbjct: 289 AVGRVITPAQVQHAAVVLGVDPSHQGKDPAVIYLRQGLHCKKLGEWQRT 337 >gi|268589373|ref|ZP_06123594.1| conserved hypothetical protein [Providencia rettgeri DSM 1131] gi|291315400|gb|EFE55853.1| conserved hypothetical protein [Providencia rettgeri DSM 1131] Length = 493 Score = 285 bits (728), Expect = 8e-75, Method: Composition-based stats. Identities = 95/352 (26%), Positives = 157/352 (44%), Gaps = 18/352 (5%) Query: 4 LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63 +I T EQ ++++ M ++ + FPWG G LE+ + P +WQ E + + Sbjct: 1 MIDTMSPEEQLINDIGMFT---HDPLSYALYAFPWGEAGTELENANGPRQWQAEALNEIG 57 Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 H + P + A ++G GIGK+ + ++ W + T ++ AN+E QL+ Sbjct: 58 EHLRNPETRHQP--LQLARASGHGIGKSAFISMIIKWGMDTCEDCKVVVTANTENQLRTK 115 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 W E++KW + + WF +++ + + + +SE + Sbjct: 116 TWPEIAKWQRLSITKDWFTYTKTAIYSNDPNH----------ANAWRADAVPWSENNTEA 165 Query: 184 FVGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242 F G HN + + DEAS D++ + G T+ N WI N R G F + F Sbjct: 166 FAGLHNQGKRIILIFDEASNIADLVWEVAEGALTDENTEIIWIAFGNPTRNTGRFRECFR 225 Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302 WK QID+RTVEG + E I YG+D D ++ + G FP FIP Sbjct: 226 KFKHRWKTKQIDSRTVEGTNKEQIEKWIQDYGVDDDFVKVRVRGIFPSTSEKQFIPTGLT 285 Query: 303 EEAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352 + AM R + +AP+I+G D A G D V+ R+G + ++ S + Sbjct: 286 DAAMKRTVTQAEVSHAPIIIGVDPAYSGDDDAVIYLRQGLHSKCLWTGSKTI 337 >gi|212710820|ref|ZP_03318948.1| hypothetical protein PROVALCAL_01888 [Providencia alcalifaciens DSM 30120] gi|212686517|gb|EEB46045.1| hypothetical protein PROVALCAL_01888 [Providencia alcalifaciens DSM 30120] Length = 493 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 96/352 (27%), Positives = 157/352 (44%), Gaps = 18/352 (5%) Query: 4 LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63 +I T EQ ++++ M ++ + FPWG G LE+ S P +WQ E + + Sbjct: 1 MIETMSPEEQLINDIGMFT---HDPLSYALYAFPWGEAGTELENASGPRQWQAEALNEIG 57 Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 H + P + A ++G GIGK+ + ++ W + T ++ AN+E QL+ Sbjct: 58 EHLRNPETRHQP--LQLARASGHGIGKSAFISMIIKWGMDTCEDCKVVVTANTENQLRTK 115 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 W E++KW + + WF +++ + + + +SE + Sbjct: 116 TWPEIAKWQRLSITKDWFTCTKTAIYSNDPNH----------ANAWRADAVPWSENNTEA 165 Query: 184 FVGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242 F G HN + + DEAS D++ + G T+ N WI N R G F + F Sbjct: 166 FAGLHNQGKRIILVFDEASNIADLVWEVAEGALTDENTEIIWIAFGNPTRNTGRFRECFR 225 Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302 WK QID+RTVEG + E I YG+D D ++ + G FP FIP Sbjct: 226 KFKHRWKTKQIDSRTVEGTNKEQIEKWIQDYGVDDDFVKVRVRGIFPSTSEKQFIPTGLT 285 Query: 303 EEAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352 + AM R + +AP+I+G D A G D V+ R+G + ++ S + Sbjct: 286 DAAMKRTVTQAEVSHAPIILGVDPAYSGDDDAVIYLRQGLHSKCLWTGSKTI 337 >gi|215487825|ref|YP_002330256.1| predicted terminase, large subunit [Escherichia coli O127:H6 str. E2348/69] gi|215265897|emb|CAS10306.1| predicted terminase, large subunit [Escherichia coli O127:H6 str. E2348/69] Length = 493 Score = 284 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 88/348 (25%), Positives = 152/348 (43%), Gaps = 18/348 (5%) Query: 7 TDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHC 66 EQ + ++ A + + FPWG G L H + P +WQ + + H Sbjct: 5 AMSPEEQLVEDI---ASFTYDPLGYALYAFPWGEDGTELAHATGPRKWQADAFREIRDHL 61 Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 + P + A ++G GIGK+ + ++ W +ST ++ AN++ QL+ W Sbjct: 62 QNPATRHQPLM--LARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWP 119 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 E+ KW ++ + WF + +++ + + K + +SE + F G Sbjct: 120 EIIKWSNLAITKEWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAFAG 169 Query: 187 PHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL 245 HN + V DEAS D++ + G T+ + W+ N R G F + F Sbjct: 170 LHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYK 229 Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA 305 WK QID+RTVEG + + + YG DSD ++ + G FP N FIP + A Sbjct: 230 HRWKCAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKVRVRGIFPDASENQFIPSGLTQPA 289 Query: 306 MSREAIDD--LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 + R +A +++G D + +G D V+ R+G + + +W Sbjct: 290 VGRVITPAQVQHAAVVLGVDPSHQGKDPAVIYLRQGLHCKKLGEWQRT 337 >gi|303328395|ref|ZP_07358832.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3] gi|302861389|gb|EFL84326.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3] Length = 500 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 93/337 (27%), Positives = 147/337 (43%), Gaps = 16/337 (4%) Query: 25 VLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISA 84 FV+ FPWG G ++ P WQ E + + + + ++ + A+S+ Sbjct: 26 AADPLGFVLFAFPWG-GGALADYPDGPDVWQREILRGMGEQLSTGASA--ASVIREAVSS 82 Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 G G+GK+ L AW++LW +ST + AN+E QLK WAE++KW + +WF+ Sbjct: 83 GHGVGKSALVAWIILWAMSTFSDTRGVVTANTENQLKGKTWAELAKWHRLCLCGYWFDCT 142 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-MAVFNDEASGT 203 + +L + E K + + +SE + F G HN + + DEAS Sbjct: 143 ATALISTQAGHE----------KTWRVDMVAWSERNTEAFAGLHNKGRRVLLIFDEASAI 192 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 PD I + G T+ + W N R G F + F W ++D+RT D Sbjct: 193 PDAIWEVSEGALTDADTEIIWCCFGNPTRNTGRFRECFGRYAHRWNTRRVDSRTAAMTDK 252 Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY--APLIMG 321 + YG DSD R+ + G+FP+ FI + + EA R D Y AP I+G Sbjct: 253 NQLAQWVEDYGEDSDFVRVRVRGEFPRAGDRQFISSDIVHEARGRSLKPDQYSFAPRILG 312 Query: 322 CDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQ 358 D+A G D++V+ R+G + Sbjct: 313 VDVARSGSDQSVITRRQGLACLEQRKFRGLDTVTLAG 349 >gi|323156136|gb|EFZ42295.1| terminase large subunit [Escherichia coli EPECa14] Length = 491 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 93/350 (26%), Positives = 155/350 (44%), Gaps = 18/350 (5%) Query: 5 ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64 + EQ + ++ A + + FPWG +G L H + P +WQ + + Sbjct: 3 DTALSPEEQLIEDI---AGFTHDPLGYALYAFPWGEEGTELAHATGPRQWQADAFREIRD 59 Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124 H + P + A+++G GIGK+ + ++ W +ST ++ AN++ QL+ Sbjct: 60 HLQNPATRYQPLM--LALASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKT 117 Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184 W E+ KW ++ + WF + +++ + + K + +SE + F Sbjct: 118 WPEIIKWSNLAITKDWFTCTATAMYSNDLGHD----------KRWRADAIPWSEHNTEAF 167 Query: 185 VGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243 G HN + V DEAS D++ + G T+ + W+ N R G F + F Sbjct: 168 AGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRK 227 Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303 WK QID+RTVEG + + + YG DSD +I + G FP FIP + Sbjct: 228 YKHRWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTD 287 Query: 304 EAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 EAM R YAP+I+G D A G D V+ R+G + ++ + Sbjct: 288 EAMKRVVTAAQVAYAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKT 337 >gi|304398406|ref|ZP_07380280.1| terminase, large subunit [Pantoea sp. aB] gi|304354272|gb|EFM18645.1| terminase, large subunit [Pantoea sp. aB] Length = 490 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 82/329 (24%), Positives = 144/329 (43%), Gaps = 15/329 (4%) Query: 26 LSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAG 85 + + FPWG +G L + P +WQ + + + H + P + ++G Sbjct: 20 HDPFGYALYAFPWGEEGTDLAYSKGPRQWQEDAFKQIGAHLQNPDTRHQPLM--IGRASG 77 Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 GIGK+ + ++ W + T ++ AN+E QL+ W E++KW + + WF + Sbjct: 78 HGIGKSAFISMLVKWGMDTCEDCKVVVTANTENQLRTKTWPEIAKWQRLSITQDWFTCTA 137 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT-HGMAVFNDEASGTP 204 +++ + +K + +SE + F G HN + + DEAS Sbjct: 138 TAIYSNDPSH----------AKSWRADAIPWSENNTEAFAGLHNERKRIILIFDEASNIA 187 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264 D++ + G T+ N W+ N R G F + F WK QID+R+VEG + Sbjct: 188 DLVWEVAEGALTDENTEIIWVAFGNPTRNTGRFRECFRKLRHRWKTAQIDSRSVEGTNKE 247 Query: 265 FHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIMGC 322 + + YG DSD ++ + G FP FIP + A+ R +A ++G Sbjct: 248 QIQKWVDDYGEDSDFVKVRVRGLFPSASEAQFIPTGLTDAAVGRVITPGQVAHAATVIGV 307 Query: 323 DIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 D A +GGD V+ R+G + + ++ Sbjct: 308 DPAHQGGDPAVIYLRQGLHTKKLGEYQRT 336 >gi|300898423|ref|ZP_07116764.1| conserved hypothetical protein [Escherichia coli MS 198-1] gi|300357890|gb|EFJ73760.1| conserved hypothetical protein [Escherichia coli MS 198-1] Length = 491 Score = 276 bits (705), Expect = 4e-72, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 18/350 (5%) Query: 5 ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64 + EQ + ++ A + + FPWG +G L H + P +WQ + + Sbjct: 3 DTALSPEEQLIEDI---AGFTHDPLGYALYAFPWGEEGTELAHATGPRKWQADAFREIRD 59 Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124 H + P + A ++G GIGK+ + ++ W +ST ++ AN++ QL+ Sbjct: 60 HLQNPETRYQPLM--LARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKT 117 Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184 W E+ KW ++ + WF + +++ + + K + +SE + F Sbjct: 118 WPEIIKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAF 167 Query: 185 VGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243 G HN + V DEAS D++ + G T+ + W+ N R G F + F Sbjct: 168 AGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRK 227 Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303 WK QID+RTVEG + + + YG DSD +I + G FP FIP + Sbjct: 228 YKHRWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTD 287 Query: 304 EAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 EAM R +AP+I+G D A G D V+ R+G + ++ + Sbjct: 288 EAMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKT 337 >gi|332344357|gb|AEE57691.1| terminase, large subunit [Escherichia coli UMNK88] Length = 491 Score = 276 bits (704), Expect = 5e-72, Method: Composition-based stats. Identities = 92/349 (26%), Positives = 154/349 (44%), Gaps = 18/349 (5%) Query: 6 STDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVH 65 + EQ + ++ A + + FPWG +G L H + P +WQ + + H Sbjct: 4 AAMSPEEQLVEDI---ASFTYDPLGYALYAFPWGEEGTELAHATGPRKWQADAFREIRDH 60 Query: 66 CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW 125 + P + A ++G GIGK+ + ++ W +ST ++ AN++ QL+ W Sbjct: 61 LQNPATRHQPLM--LARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTW 118 Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185 E+ KW ++ + WF + +++ + + K + +SE + F Sbjct: 119 PEIIKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAFA 168 Query: 186 GPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244 G HN + V DEAS D++ + G T+ + W+ N R G F + F Sbjct: 169 GLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKY 228 Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE 304 WK QID+RTVEG + + + YG DSD +I + G FP FIP +E Sbjct: 229 KHRWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDE 288 Query: 305 AMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 AM R +AP+I+G D A G D V+ R+G + ++ + Sbjct: 289 AMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKT 337 >gi|327252187|gb|EGE63859.1| terminase large subunit [Escherichia coli STEC_7v] Length = 491 Score = 276 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 18/350 (5%) Query: 5 ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64 + EQ + ++ A + + FPWG +G L H + P +WQ + + Sbjct: 3 DTALSPEEQLIEDI---AGFTHDPLGYALYAFPWGEEGTELAHATGPRQWQADAFREIRD 59 Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124 H + P + A ++G GIGK+ + ++ W +ST ++ AN++ QL+ Sbjct: 60 HLQNPATRYQPLM--LARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKT 117 Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184 W E+ KW ++ + WF + +++ + + K + +SE + F Sbjct: 118 WPEIIKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAF 167 Query: 185 VGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243 G HN + V DEAS D++ + G T+ + W+ N R G F + F Sbjct: 168 AGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRK 227 Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303 WK QID+RTVEG + + + YG DSD +I + G FP FIP + Sbjct: 228 YKHRWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTD 287 Query: 304 EAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 EAM R +AP+I+G D A G D V+ R+G + ++ + Sbjct: 288 EAMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKT 337 >gi|331648179|ref|ZP_08349269.1| conserved hypothetical protein [Escherichia coli M605] gi|331043039|gb|EGI15179.1| conserved hypothetical protein [Escherichia coli M605] Length = 491 Score = 275 bits (703), Expect = 6e-72, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 18/350 (5%) Query: 5 ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64 + EQ + ++ A + + FPWG +G L H + P +WQ + + Sbjct: 3 DTALSPEEQLIEDI---AGFTHDPLGYALYAFPWGEEGTELAHATGPRQWQADAFREIRD 59 Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124 H + P + A ++G GIGK+ + ++ W +ST ++ AN++ QL+ Sbjct: 60 HLQNPETRYQPLM--LARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKT 117 Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184 W E+ KW ++ + WF + +++ + + K + +SE + F Sbjct: 118 WPEIIKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAF 167 Query: 185 VGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243 G HN + V DEAS D++ + G T+ + W+ N R G F + F Sbjct: 168 AGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRK 227 Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303 WK QID+RTVEG + + + YG DSD +I + G FP FIP + Sbjct: 228 YKHRWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTD 287 Query: 304 EAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 EAM R +AP+I+G D A G D V+ R+G + ++ + Sbjct: 288 EAMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKT 337 >gi|298381721|ref|ZP_06991320.1| terminase large subunit protein [Escherichia coli FVEC1302] gi|301019339|ref|ZP_07183525.1| conserved hypothetical protein [Escherichia coli MS 196-1] gi|298279163|gb|EFI20677.1| terminase large subunit protein [Escherichia coli FVEC1302] gi|299882256|gb|EFI90467.1| conserved hypothetical protein [Escherichia coli MS 196-1] gi|323948690|gb|EGB44595.1| hypothetical protein ERKG_04913 [Escherichia coli H252] Length = 491 Score = 275 bits (703), Expect = 6e-72, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 18/350 (5%) Query: 5 ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64 + EQ + ++ A + + FPWG +G L H + P +WQ + + Sbjct: 3 DTALSPEEQLIEDI---AGFTHDPLGYALYAFPWGEEGTELAHATGPRQWQADAFREIRD 59 Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124 H + P + A ++G GIGK+ + ++ W +ST ++ AN++ QL+ Sbjct: 60 HLQNPETRYQPLM--LARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKT 117 Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184 W E+ KW ++ + WF + +++ + + K + +SE + F Sbjct: 118 WPEIIKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAF 167 Query: 185 VGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243 G HN + V DEAS D++ + G T+ + W+ N R G F + F Sbjct: 168 AGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRK 227 Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303 WK QID+RTVEG + + + YG DSD +I + G FP FIP + Sbjct: 228 YKHRWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTD 287 Query: 304 EAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 EAM R +AP+I+G D A G D V+ R+G + ++ + Sbjct: 288 EAMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKT 337 >gi|294491573|gb|ADE90329.1| putative phage terminase, large subunit [Escherichia coli IHE3034] Length = 491 Score = 275 bits (703), Expect = 7e-72, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 18/350 (5%) Query: 5 ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64 + EQ + ++ A + + FPWG +G L H + P +WQ + + Sbjct: 3 DTALSPEEQLIEDI---AGFTHDPLGYALYAFPWGEEGTELAHATGPRQWQADAFREIRD 59 Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124 H + P + A ++G GIGK+ + ++ W +ST ++ AN++ QL+ Sbjct: 60 HLQNPETRYQPLM--LARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKT 117 Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184 W E+ KW ++ + WF + +++ + + K + +SE + F Sbjct: 118 WPEIIKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAF 167 Query: 185 VGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243 G HN + V DEAS D++ + G T+ + W+ N R G F + F Sbjct: 168 AGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRK 227 Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303 WK QID+RTVEG + + + YG DSD +I + G FP FIP + Sbjct: 228 YKHRWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTD 287 Query: 304 EAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 EAM R +AP+I+G D A G D V+ R+G + ++ + Sbjct: 288 EAMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKT 337 >gi|324008564|gb|EGB77783.1| hypothetical protein HMPREF9532_01752 [Escherichia coli MS 57-2] Length = 491 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 18/350 (5%) Query: 5 ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64 + EQ + ++ A + + FPWG +G L H + P +WQ + + Sbjct: 3 DTALSPEEQLIEDI---AGFTHDPLGYALYAFPWGEEGTELAHATGPRQWQADAFREIRD 59 Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124 H + P + A ++G GIGK+ + ++ W +ST ++ AN++ QL+ Sbjct: 60 HLQNPETRYQPLM--LARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKT 117 Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184 W E+ KW ++ + WF + +++ + + K + +SE + F Sbjct: 118 WPEIIKWSNLAITKDWFTCTATAMYSNDLGHD----------KRWRADAIPWSEHNTEAF 167 Query: 185 VGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243 G HN + V DEAS D++ + G T+ + W+ N R G F + F Sbjct: 168 AGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRK 227 Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303 WK QID+RTVEG + + + YG DSD +I + G FP FIP + Sbjct: 228 YKHRWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTD 287 Query: 304 EAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 EAM R +AP+I+G D A G D V+ R+G + ++ + Sbjct: 288 EAMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKT 337 >gi|218700994|ref|YP_002408623.1| putative phage terminase, large subunit [Escherichia coli IAI39] gi|218370980|emb|CAR18807.1| putative phage terminase, large subunit [Escherichia coli IAI39] Length = 491 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 93/351 (26%), Positives = 156/351 (44%), Gaps = 17/351 (4%) Query: 4 LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63 + T E++L + + A + + FPWG +G L H + P +WQ + + Sbjct: 1 MTDTALSPEEQLIDDI--AGFTHDPLGYALYAFPWGEEGTELAHATGPRQWQADAFREIR 58 Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 H + P + A ++G GIGK+ + ++ W +ST ++ AN++ QL+ Sbjct: 59 DHLQNPETRYQPLM--LARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTK 116 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 W E+ KW ++ + WF + +++ + + K + +SE + Sbjct: 117 TWPEIIKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEA 166 Query: 184 FVGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242 F G HN + V DEAS D++ + G T+ + W+ N R G F + F Sbjct: 167 FAGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFR 226 Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302 WK QID+RTVEG + + + YG DSD +I + G FP FIP Sbjct: 227 KYKHRWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLT 286 Query: 303 EEAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 +EAM R +AP+I+G D A G D V+ R+G + ++ + Sbjct: 287 DEAMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKT 337 >gi|117624715|ref|YP_853628.1| putative phage terminase, large subunit [Escherichia coli APEC O1] gi|115513839|gb|ABJ01914.1| putative phage terminase, large subunit [Escherichia coli APEC O1] Length = 491 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 91/350 (26%), Positives = 154/350 (44%), Gaps = 18/350 (5%) Query: 5 ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64 + EQ + ++ A + + FPWG +G L H + P +WQ + + Sbjct: 3 DTALSPEEQLIEDI---AGFTHDPLGYALYAFPWGEEGTELAHATGPRQWQADAFREIRD 59 Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124 H + P + A ++G GIGK+ + ++ W +ST ++ AN++ QL+ Sbjct: 60 HLQNPETRYQPLM--LARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKT 117 Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184 W E+ KW ++ + WF + +++ + + K + +SE + F Sbjct: 118 WPEIIKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAF 167 Query: 185 VGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243 G HN + V DEAS D++ + G T+ + W+ N R G F + F Sbjct: 168 AGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRK 227 Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303 WK QID+RTVEG + + + YG DSD +I + G FP FIP + Sbjct: 228 YKHRWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTD 287 Query: 304 EAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 EAM R ++P+I+G D A G D V+ R+G + ++ + Sbjct: 288 EAMKRVVTAAQVAHSPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKT 337 >gi|301046412|ref|ZP_07193572.1| conserved hypothetical protein [Escherichia coli MS 185-1] gi|300301638|gb|EFJ58023.1| conserved hypothetical protein [Escherichia coli MS 185-1] Length = 491 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 18/350 (5%) Query: 5 ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64 ++ EQ + ++ A + + FPWG G L H + P +WQ + + Sbjct: 3 VAAMSPEEQLVEDI---ASFTYDPLGYALYAFPWGEDGTELAHATGPRQWQADAFREIRD 59 Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124 H + P + A ++G GIGK+ + ++ W +ST ++ AN++ QL+ Sbjct: 60 HLQNPETRYQPLM--LARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKT 117 Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184 W E+ KW ++ + WF + +++ + + K + +SE + F Sbjct: 118 WPEIIKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAF 167 Query: 185 VGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243 G HN + V DEAS D++ + G T+ + W+ N R G F + F Sbjct: 168 AGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRK 227 Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303 WK QID+RTVEG + + + YG DSD +I + G FP FIP + Sbjct: 228 YKHRWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTD 287 Query: 304 EAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 EAM R +AP+I+G D A G D V+ R+G + ++ + Sbjct: 288 EAMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKT 337 >gi|89152423|ref|YP_512256.1| putative terminase large subunit [Escherichia phage phiV10] gi|74055446|gb|AAZ95895.1| putative terminase large subunit [Escherichia phage phiV10] Length = 491 Score = 274 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 91/350 (26%), Positives = 153/350 (43%), Gaps = 18/350 (5%) Query: 5 ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64 + EQ + ++ A + + FPWG +G L H + P +WQ + + Sbjct: 3 DTALSPEEQLIEDI---AGFTHDPLGYALYAFPWGEEGTELAHATGPRQWQADAFREIRD 59 Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124 H + P + A ++G GIGK+ + ++ W +ST ++ AN++ QL+ Sbjct: 60 HLQNPETRYQPLM--LARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKT 117 Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184 W E+ KW ++ + WF + +++ + + K + +SE + F Sbjct: 118 WPEIIKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAF 167 Query: 185 VGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243 G HN + V DEAS D++ + G T+ + W+ N R G F + F Sbjct: 168 AGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRK 227 Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303 WK QID+RTVEG + + + YG SD +I + G FP FIP + Sbjct: 228 YKHRWKTAQIDSRTVEGTNKQQLQKWVDDYGEGSDFVKIRVRGIFPDASELQFIPTGLTD 287 Query: 304 EAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 EAM R +AP+I+G D A G D V+ R+G + ++ + Sbjct: 288 EAMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKT 337 >gi|227355862|ref|ZP_03840255.1| phage terminase, large subunit [Proteus mirabilis ATCC 29906] gi|227164181|gb|EEI49078.1| phage terminase, large subunit [Proteus mirabilis ATCC 29906] Length = 494 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 90/342 (26%), Positives = 147/342 (42%), Gaps = 18/342 (5%) Query: 9 QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68 EQ + ++ A + FPWG G LE ++ P +WQ E + + H + Sbjct: 8 SPEEQLIEDI---ASFTHDPLGYAYYAFPWGEAGGELEEYNGPRQWQAEALNEIGEHLRN 64 Query: 69 NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128 P + A ++G GIGK+ + ++ W + T ++ AN+E QL+ W E+ Sbjct: 65 PKTRHQPLL--LARASGHGIGKSAFISMIIKWGMDTCEDCKVVVTANTENQLRTKTWPEI 122 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188 +KW + +WF +++ + + + +SE + F G H Sbjct: 123 AKWQRLSLTNNWFTCTKTAIYSNDPNH----------ANAWRADAVPWSENNTEAFAGLH 172 Query: 189 NT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247 N + + DEAS D++ + G T+ WI N R G F + F Sbjct: 173 NKGKRIILVFDEASNIADLVWEVAEGALTDEGTEIIWIAFGNPTRNTGRFRECFRKFKHR 232 Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307 W QID+RTVEG + + YG DSD ++ + G FP FIP +EAM Sbjct: 233 WNTKQIDSRTVEGSNKEQIKNWEEDYGEDSDFFKVRVRGVFPSASELQFIPTGLTDEAMK 292 Query: 308 REA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347 R + +AP+I+G D A G D V+ R+G + ++ Sbjct: 293 RIVTQAEVAHAPVIIGVDPAYSGIDDAVIYLRQGLFSKCLWT 334 >gi|30387381|ref|NP_848210.1| terminase large subunit [Enterobacteria phage epsilon15] gi|30266036|gb|AAO06065.1| terminase large subunit [Salmonella phage epsilon15] Length = 491 Score = 272 bits (696), Expect = 4e-71, Method: Composition-based stats. Identities = 91/351 (25%), Positives = 155/351 (44%), Gaps = 17/351 (4%) Query: 4 LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63 + + E++L E + A + + FPWG G L H + P +WQ + + Sbjct: 1 MTAAAISTEEQLVEDI--ASFTYDPLGYALYAFPWGEDGTELAHATGPRKWQADAFREIR 58 Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 H + P + A ++G GIGK+ + ++ W +ST ++ AN++ QL+ Sbjct: 59 DHLQNPATRHQPLM--LARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTK 116 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 W E+ KW ++ + WF + +++ + + K + +SE + Sbjct: 117 TWPEIIKWSNLAITKEWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEA 166 Query: 184 FVGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242 F G HN + V DEAS D++ + G T+ + W+ N R G F + F Sbjct: 167 FAGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFR 226 Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302 WK QID+RTVEG + + + YG +SD ++ + G FP FIP Sbjct: 227 KYKHRWKCAQIDSRTVEGTNKQQLQKWVDDYGEESDFVKVRVRGIFPDASELQFIPTGLT 286 Query: 303 EEAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 +EAM R +AP+I+G D A G D V+ R+G + ++ + Sbjct: 287 DEAMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKT 337 >gi|262043569|ref|ZP_06016682.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039103|gb|EEW40261.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 491 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 91/350 (26%), Positives = 153/350 (43%), Gaps = 18/350 (5%) Query: 5 ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64 + EQ + ++ A + + FPWG G L H + P +WQ + + Sbjct: 3 DAALSPEEQLIDDI---ASFTHDPLGYALYAFPWGEDGTELAHATGPRKWQADAFREIRD 59 Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124 H + P + A ++G GIGK+ + ++ W +ST ++ AN++ QL+ Sbjct: 60 HLQNPATRHQPLM--LARASGHGIGKSAFISMLINWAMSTCEDCKVVVTANTDNQLRTKT 117 Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184 W E+ KW ++ + WF + +++ + + K + +SE + F Sbjct: 118 WPEIIKWSNLAITKEWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAF 167 Query: 185 VGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243 G HN + V DEAS D++ + G T+ + W+ N R G F + F Sbjct: 168 AGLHNERKRIVVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRK 227 Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303 WK QID+RTVEG + + + YG DSD ++ + G FP FIP + Sbjct: 228 YKHRWKCAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKVRVRGIFPDASELQFIPTGLTD 287 Query: 304 EAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 EAM R + +AP I+G D A G D V+ R+G + ++ + Sbjct: 288 EAMKRVVTAVQVAHAPRIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKT 337 >gi|320175050|gb|EFW50163.1| terminase B protein, putative [Shigella dysenteriae CDC 74-1112] Length = 480 Score = 272 bits (694), Expect = 8e-71, Method: Composition-based stats. Identities = 89/329 (27%), Positives = 147/329 (44%), Gaps = 15/329 (4%) Query: 26 LSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAG 85 + + FPWG +G L H + P +WQ + + H + P + A ++G Sbjct: 10 HDPLGYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQNPETRYQPLM--LARASG 67 Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 GIGK+ + ++ W +ST ++ AN++ QL+ W E+ KW ++ + WF + Sbjct: 68 HGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTA 127 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT-HGMAVFNDEASGTP 204 +++ + + K + +SE + F G HN + V DEAS Sbjct: 128 TAMYSNDPGHD----------KRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIA 177 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264 D++ + G T+ + W+ N R G F + F WK QID+RTVEG + Sbjct: 178 DLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKCAQIDSRTVEGTNKQ 237 Query: 265 FHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA--IDDLYAPLIMGC 322 + + YG DSD +I + G FP FIP +EAM R +AP+I+G Sbjct: 238 QLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGV 297 Query: 323 DIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 D A G D V+ R+G + ++ + Sbjct: 298 DPAYSGVDDAVIYLRQGLHSKVLWTGNKT 326 >gi|330007152|ref|ZP_08305894.1| hypothetical protein HMPREF9538_03583 [Klebsiella sp. MS 92-3] gi|328535499|gb|EGF61959.1| hypothetical protein HMPREF9538_03583 [Klebsiella sp. MS 92-3] Length = 495 Score = 271 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 93/351 (26%), Positives = 154/351 (43%), Gaps = 18/351 (5%) Query: 4 LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63 L +Q EQ + ++ A + + FPWG G L H S P +WQ + + Sbjct: 6 LSPEEQLKEQLIDDI---ASFTHDPLGYALYAFPWGEDGTELAHASGPRQWQADAFREIG 62 Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 H + P + + ++G GIGK+ + ++ W +ST ++ AN++ QL+ Sbjct: 63 EHLQNPATRHQPLM--ISRASGHGIGKSAFISMLINWAMSTCEDCKVVVTANTDNQLRTK 120 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 W E+ KW ++ + WF + +++ + + K + +SE + Sbjct: 121 TWPEIIKWSNLAITKEWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEA 170 Query: 184 FVGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242 F G HN + V DEAS D++ + G T+ + W+ N R G F + F Sbjct: 171 FAGLHNERKRIVVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFR 230 Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302 WK QID+RTVEG + + + YG DSD ++ + G FP FIP Sbjct: 231 KYKHRWKCAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKVRVRGIFPDASELQFIPTGLT 290 Query: 303 EEAMSREA--IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 +EAM R +AP I+G D A G D V+ R+G + ++ + Sbjct: 291 DEAMKRVVTAAQVAHAPRIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKT 341 >gi|282848875|ref|ZP_06258265.1| conserved hypothetical protein [Veillonella parvula ATCC 17745] gi|282581380|gb|EFB86773.1| conserved hypothetical protein [Veillonella parvula ATCC 17745] Length = 483 Score = 269 bits (686), Expect = 6e-70, Method: Composition-based stats. Identities = 92/330 (27%), Positives = 148/330 (44%), Gaps = 15/330 (4%) Query: 26 LSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAG 85 FV +PWG G PLE+ P WQ++ ++ + T + A+++G Sbjct: 16 HDPLAFVYFAYPWGEPGTPLENMEGPDEWQIQILKDIGEQLKKG--KDLQTAIQEAVASG 73 Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 GIGK+ L +W++ + IST + AN+E QL+ W E+SKW +M + F + Sbjct: 74 HGIGKSALISWLIHFAISTHENTRGVVTANTEGQLRTKTWPELSKWHNMFIAKDLFTYTA 133 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT-HGMAVFNDEASGTP 204 ++ S E K + I +S+ P++F G HN + + V DEAS Sbjct: 134 TAIFSSDKDYE----------KTWRIDAIPWSKNSPESFAGLHNQGNRILVLFDEASAID 183 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264 D+I + G T+ N W N R +G F + F + W YQID+RTV+ + Sbjct: 184 DVIWEVTEGALTDANTEIIWCAFGNPTRNSGRFRECFRKYRKFWNTYQIDSRTVKISNKT 243 Query: 265 FHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL--YAPLIMGC 322 E + YG DSD ++ + G FP FI ++A + + P+I+G Sbjct: 244 KIEEWLEAYGEDSDFFKVRVRGVFPSASDLQFISTEIADKAQKQVYKPGQFEHLPVIIGV 303 Query: 323 DIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352 D A G D +V R+G ++ + Sbjct: 304 DPAWTGSDSLEIVMRQGYYMKSLASIPKND 333 >gi|167032754|ref|YP_001667985.1| putative phage terminase large subunit [Pseudomonas putida GB-1] gi|166859242|gb|ABY97649.1| putative phage terminase, large subunit [Pseudomonas putida GB-1] Length = 499 Score = 266 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 99/336 (29%), Positives = 158/336 (47%), Gaps = 14/336 (4%) Query: 12 EQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVN 71 EQEL + A +V+ FPWG G L + + P +WQ E +E++ + Sbjct: 11 EQELANDI--ASFSDDPLGYVLYAFPWGEAGGELANKTGPRKWQREVLESIGEQLRAGAK 68 Query: 72 NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131 + + A+++G GIGK+ L +W++ W + T + AN+E+QL+ W EV+KW Sbjct: 69 -DRGEVIREAVASGHGIGKSALVSWVIKWALDTEVDTRGVVTANTESQLRTKTWPEVAKW 127 Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT- 190 + HWF++ +L + E + I +S+ + F G HN Sbjct: 128 NRLSITAHWFKLTGTALISTDPDHEKN----------WRIDAVPWSDTNTEAFAGLHNEG 177 Query: 191 HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250 + + DEAS D++ + G T+ + W N R +G F + F W+ Sbjct: 178 KRILLIFDEASAIADLVWEVAEGALTDADTEIIWAAFGNPTRNSGRFRECFTKFKHRWRH 237 Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310 Q+D+RTV+G + I+ YG DSD RI + G FP+ IP +++ EAM R+ Sbjct: 238 RQVDSRTVDGTNKTQIAKWIADYGEDSDFVRIRVRGMFPRASDLQLIPTDWVAEAMRRDG 297 Query: 311 IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346 + L L+ G DIA G D V+ FRRG + I Sbjct: 298 VYGLDDALVCGIDIARGGMDNNVIRFRRGMDAKSIK 333 >gi|290968649|ref|ZP_06560187.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str. 28L] gi|290781302|gb|EFD93892.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str. 28L] Length = 487 Score = 252 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 98/349 (28%), Positives = 157/349 (44%), Gaps = 25/349 (7%) Query: 8 DQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCH 67 + + EL + L FV F W P WQ++ ++ V Sbjct: 1 MKNEDIELLQALGS--LASDPVAFVYFAFDW---DSEELKGQNPQTWQIKTLKEVGEGL- 54 Query: 68 SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127 S T + A ++G GIGK+ L AW++LW ISTRP + AN+ TQL+ WAE Sbjct: 55 -----SLSTALQHATASGHGIGKSALVAWLILWAISTRPDTRGVVTANTATQLETKTWAE 109 Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187 +SKW + + +F + S ++ E + + I +S +R ++F G Sbjct: 110 LSKWYHLFRGKKFFTLTSTAIFCRQEGHE----------RTWRIDAIPWSVDRTESFAGL 159 Query: 188 HNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246 HN + + + DEAS + I + G T+ + W++ N R G F+D F+ + Sbjct: 160 HNQGNRLLLIFDEASAIDNKIWEVAEGALTDKDTEILWLVFGNPTRSTGRFFDCFHKYKK 219 Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306 W +ID+RTV+ + + I YG+DSD ++ +LG+FP FI + A Sbjct: 220 SWITQKIDSRTVDISNKTQLQKWIQTYGIDSDFVKVRVLGEFPDTSDTQFISTAIVRTAW 279 Query: 307 SREAIDDLY---APLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352 R + AP I+G D A GGD TV+ R+G E + ++ Sbjct: 280 ERRPLRTAEYDFAPCIIGMDPAWTGGDSTVIFLRQGFFSEKLAEYKQND 328 >gi|228911519|ref|ZP_04075310.1| hypothetical protein bthur0013_56490 [Bacillus thuringiensis IBL 200] gi|228848128|gb|EEM92991.1| hypothetical protein bthur0013_56490 [Bacillus thuringiensis IBL 200] Length = 459 Score = 252 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 83/311 (26%), Positives = 138/311 (44%), Gaps = 30/311 (9%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P WQ + + + K ++ +G+G+GKT L + +++W + RP + Sbjct: 23 PDEWQRKVLMDLA------------QSPKVSVRSGQGVGKTGLESVVVIWFLCCRPNPKV 70 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 IC A ++ QL LWAE++KWL ++ + ++ G + Sbjct: 71 ICTAPTKEQLFTVLWAEIAKWLEGSAVKNLLKWTKTRVYMIGSEER------------WF 118 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 T RT ++ P+ G H M DEASG D I ++ILG + F N Sbjct: 119 ATARTATK--PENMQGFH-EDYMLFVCDEASGIADPIMEAILGTLSGAENKLFLC--GNP 173 Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290 R +G FYD N + +K +++ + E + +YG SDV R+ +LG+FP+ Sbjct: 174 TRTSGVFYDSHNRDRDLYKIHKVSSLDSPRTSKDNIEVLKKKYGEGSDVWRVRVLGEFPK 233 Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350 E + FIP +E+A S + L +G D+A G D+TV+ R GN + + + Sbjct: 234 AEADAFIPLEIVEQAASCKVEPT-GETLDLGVDVARFGDDETVIAPRIGNKVFKLLNHYK 292 Query: 351 KLIQETNQEGC 361 + ET Sbjct: 293 QDTMETAGHVL 303 >gi|228968731|ref|ZP_04129698.1| hypothetical protein bthur0004_54930 [Bacillus thuringiensis serovar sotto str. T04001] gi|228790961|gb|EEM38595.1| hypothetical protein bthur0004_54930 [Bacillus thuringiensis serovar sotto str. T04001] Length = 459 Score = 252 bits (642), Expect = 9e-65, Method: Composition-based stats. Identities = 83/311 (26%), Positives = 138/311 (44%), Gaps = 30/311 (9%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P WQ + + + K ++ +G+G+GKT L + +++W + RP + Sbjct: 23 PDEWQRKVLMDLA------------QSPKVSVRSGQGVGKTGLESVVVIWFLCCRPNPKV 70 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 IC A ++ QL LWAE++KWL ++ + ++ G + Sbjct: 71 ICTAPTKEQLFTVLWAEIAKWLEGSAVKNLLKWTKTRVYMIGSEER------------WF 118 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 T RT ++ P+ G H M DEASG D I ++ILG + F N Sbjct: 119 ATARTATK--PENMQGFH-EDYMLFVCDEASGIADPIMEAILGTLSGAENKLFLC--GNP 173 Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290 R +G FYD N + +K +++ + E + +YG SDV R+ +LG+FP+ Sbjct: 174 TRTSGVFYDSHNRDRDLYKIHKVSSLDSPRTSKDNIEVLKKKYGEGSDVWRVRVLGEFPK 233 Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350 E + FIP +E+A S + L +G D+A G D+TV+ R GN + + + Sbjct: 234 AEADAFIPLEIVEQAASCKVEPT-GETLDLGVDVARFGDDETVIAPRIGNKVFKLLNHYK 292 Query: 351 KLIQETNQEGC 361 + ET Sbjct: 293 QDTMETAGHVL 303 >gi|332981151|ref|YP_004462592.1| hypothetical protein Mahau_0567 [Mahella australiensis 50-1 BON] gi|332698829|gb|AEE95770.1| hypothetical protein Mahau_0567 [Mahella australiensis 50-1 BON] Length = 461 Score = 251 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 87/310 (28%), Positives = 140/310 (45%), Gaps = 32/310 (10%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +P WQ E ++A+ + + A+ +G G+GKT L AW +LW + TRP Sbjct: 26 EPDDWQAETLQALADN------------PRVAVRSGHGVGKTALEAWALLWFLFTRPYPK 73 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLP-HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 I C A + QL + LWAE SKWL P + +FE Q + + Sbjct: 74 IPCTAPTREQLHDILWAEASKWLERAPALKPYFEWQKTRIVQKQY------------PGR 121 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 + T RT +P+ G H H + DEASG D I ++I G T + Sbjct: 122 WFATARTS--NKPENMAGFHEEH-LLFIIDEASGIADNIFETIEGALTTSDAKLLMC--G 176 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 N + +G F+D F + ++ + + + E + +Y DSDV R+ +LG+F Sbjct: 177 NPTKNSGVFHDAFFKDRSLYWTRKVSCLDSQRVTLEYAERLKRKYHEDSDVYRVRVLGEF 236 Query: 289 PQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348 P+ E + FI + +E A R+ D L +G D+A G D+TV+ R G + ++ + Sbjct: 237 PKAEPDTFISLDIVEAATMRDVEPD--GVLEIGVDVARFGDDETVLAARAGLKLVYLKAY 294 Query: 349 SAKLIQETNQ 358 + + T Sbjct: 295 TKQDTMTTAG 304 >gi|150390341|ref|YP_001320390.1| hypothetical protein Amet_2579 [Alkaliphilus metalliredigens QYMF] gi|149950203|gb|ABR48731.1| conserved hypothetical protein [Alkaliphilus metalliredigens QYMF] Length = 469 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 88/324 (27%), Positives = 135/324 (41%), Gaps = 32/324 (9%) Query: 38 WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97 W + + P WQ + + + H K ++ +G+G+GKT L + Sbjct: 18 WFAEDMLGFY---PDPWQAKVLMDLAQH------------PKVSVRSGQGVGKTGLESIA 62 Query: 98 MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 + W + TRP +I A + QL + LWAE+SKWLS ++ +G+ Sbjct: 63 ITWYLCTRPFPKVIATAPTRQQLYDVLWAEISKWLSKSKVDKLLRWTKTKIYMNGFEER- 121 Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217 + T RT RP+ G H M DEASG D I ++ILG T Sbjct: 122 -----------WWATARTA--VRPENMQGFH-EDYMLFVVDEASGVADPIMEAILGTLTG 167 Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277 N + +G FYD N + +K +++ + E + +YG DS Sbjct: 168 YENKLLLC--GNPTKTSGTFYDSHNRDRDTYKSHKVSSMDSPRTSKENIEMLKKKYGADS 225 Query: 278 DVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFR 337 DV R+ +LG FP+ E ++ I E+A L +G DIA G DKT++ R Sbjct: 226 DVFRVRVLGDFPKGEADSLISLEVTEQAAETVVDISNAYTLNIGADIARFGDDKTIIAPR 285 Query: 338 RGNIIEHIFDWSAKLIQETNQEGC 361 GN + + +S K ET Sbjct: 286 IGNRVLDLQQYSKKDTMETAGNIL 309 >gi|282598712|ref|YP_003358792.1| putative phage terminase B protein [Enterococcus phage phiEf11] gi|300860603|ref|ZP_07106690.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] gi|307292389|ref|ZP_07572245.1| hypothetical protein HMPREF9509_02682 [Enterococcus faecalis TX0411] gi|258598082|gb|ACV83339.1| putative phage terminase B protein [Enterococcus phage phiEf11] gi|300849642|gb|EFK77392.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11] gi|306496518|gb|EFM66079.1| hypothetical protein HMPREF9509_02682 [Enterococcus faecalis TX0411] gi|315146097|gb|EFT90113.1| conserved hypothetical protein [Enterococcus faecalis TX2141] Length = 484 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 82/314 (26%), Positives = 141/314 (44%), Gaps = 32/314 (10%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P WQ + ++ + K ++ +G+G+GKT L A +LW ++ RP + Sbjct: 34 PDEWQDKVLDDLAKF------------PKVSVRSGQGVGKTALEAGAILWFLTCRPYAKV 81 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 I A + QL + LWAEV+KWL+ + + ++ G DS+ + Sbjct: 82 IATAPTMKQLYDVLWAEVAKWLNNSLIKDLLKWTKTKIYMVG------------DSERWF 129 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 T RT ++ P+ G H H M + DEASG D I ++ILG + + N Sbjct: 130 ATARTATK--PENMQGFHEDH-MLIVVDEASGVADPIMEAILGTLSGFDNKLLMC--GNP 184 Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290 + G FYD N + ++ +++ + + + + +I +YG +SDVAR+ I G+FP+ Sbjct: 185 NNIEGVFYDSHNTDRDKYRTHKVSSYDSKRTNKENIQMLIDKYGENSDVARVRIYGEFPK 244 Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPL---IMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347 +++FI +E A D + +G D+A G D T+V R G Sbjct: 245 GALDSFISLEIVEFAKDINISDSELKHVREGHIGVDVARFGDDSTIVFPRIGAKALPFEK 304 Query: 348 WSAKLIQETNQEGC 361 +S + +T Sbjct: 305 YSKQDTMQTTGRVL 318 >gi|228950291|ref|ZP_04112468.1| hypothetical protein bthur0007_63570 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809453|gb|EEM55897.1| hypothetical protein bthur0007_63570 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 495 Score = 241 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 85/374 (22%), Positives = 146/374 (39%), Gaps = 60/374 (16%) Query: 5 ISTDQKLEQELHEMLMHAEC---VLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEA 61 +S D E+E+ + ++ V FV +P WQ E + Sbjct: 3 VSNDVTTEEEVLQDIITQLLEIYVDDPVAFVEDILE-----------VEPDPWQKEVLND 51 Query: 62 VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121 + H H ++ +G+G+GKT + +W+ +W + RP IIC A ++ QL Sbjct: 52 IANHSH------------VSVRSGQGVGKTAMESWICIWFLCCRPYPKIICTAPTKQQLY 99 Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 + LWAE++KWL+ + + ++ G+ + RP Sbjct: 100 DVLWAEIAKWLNSSQVKDLLKWTKTKIYMKGFEDRW--------------FATAKTATRP 145 Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241 + G H M DEASG D I ++ILG + F N + +G F+D Sbjct: 146 ENMQGFH-EDYMLFIADEASGIADDIMEAILGTLSGSENKLFMC--GNPTKTSGVFFDSH 202 Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301 N +K +++ + E + +YG SDV R+ + G+FP+ E + FI Sbjct: 203 NKDRALYKSHKVSSADSPRTSKKNIEMLKKKYGEGSDVYRVRVEGEFPRGEADAFISLET 262 Query: 302 IEEAMSREA----------------IDDLYAPLI-MGCDIAGEGGDKTVVVFRRGNIIEH 344 E A RE ++ +GCD+A G D+T++ RRG + Sbjct: 263 AEAARMREVYKVEVIENEEEESTVKEIIPDTAVVEIGCDVARFGSDETIIATRRGWKVLP 322 Query: 345 IFDWSAKLIQETNQ 358 + + + Sbjct: 323 LQVHHQRDTMYVSG 336 >gi|150016512|ref|YP_001308766.1| hypothetical protein Cbei_1636 [Clostridium beijerinckii NCIMB 8052] gi|149902977|gb|ABR33810.1| conserved hypothetical protein [Clostridium beijerinckii NCIMB 8052] Length = 470 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 85/325 (26%), Positives = 137/325 (42%), Gaps = 33/325 (10%) Query: 38 WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97 W + H +WQ E + A+ K ++ +G+G+GKT L + + Sbjct: 18 WFAEDMMNFHA---DKWQSEVLMALA------------QSPKVSVRSGQGVGKTGLESIV 62 Query: 98 MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 + W + TRP +I A + QL + LWAE+SKWL+ + E ++ G+ Sbjct: 63 VTWYLCTRPFPKVIATAPTRQQLYDVLWAEISKWLASSKIENLLEWTKTKIYMKGYSER- 121 Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217 + T +T + RP+ G H M DEASG D I ++ILG T Sbjct: 122 -----------WWATAKTAT--RPENMQGFH-EDYMLFVVDEASGVADPIMEAILGTLTG 167 Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277 N R +G FYD N + +K +++ + E + +Y S Sbjct: 168 YENKLLMC--GNPTRTSGTFYDSHNRDRDLYKTFKVSSLESPRTSKDNIEMLKRKYHEGS 225 Query: 278 DVARIEILGQFPQQEVNNFIPHNYIEEAMSREA-IDDLYAPLIMGCDIAGEGGDKTVVVF 336 DV R+ + G+FP+ E ++ I Y E A + L +G DIA G D++V+ Sbjct: 226 DVWRVRVEGEFPKGESDSLISLEYAETATITKINNIHNNFTLHIGADIARFGNDESVIAP 285 Query: 337 RRGNIIEHIFDWSAKLIQETNQEGC 361 R GN + + ++ K ET Sbjct: 286 RIGNKVFDLLTYTKKDTMETTGNIL 310 >gi|302120432|gb|ADK92426.1| putative phage terminase large subunit [Candidatus Liberibacter asiaticus] Length = 255 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 194/255 (76%), Positives = 224/255 (87%) Query: 88 IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147 IGKTTLNAW++LWL+S RPGMSIIC+ANSETQLK TLWAEVSKWLS+LP++HWFEMQSLS Sbjct: 1 IGKTTLNAWLVLWLMSIRPGMSIICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS 60 Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207 LHP+ WY+++L S+GIDSKHY+ CRTYSEERPDTFVG HNT+GMA+ NDEASGTPD+I Sbjct: 61 LHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVI 120 Query: 208 NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267 N ILGF TE N NRFWIMTSN RRL+G FY+IFN PL+DWKR+QIDTRTVEGID FHE Sbjct: 121 NLGILGFLTEQNANRFWIMTSNPRRLSGKFYEIFNRPLDDWKRFQIDTRTVEGIDPSFHE 180 Query: 268 GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE 327 GII+RYGLDSDV R+E+ GQFPQQ++++FIP N IEEA++RE D YAPLIMGCDIA E Sbjct: 181 GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE 240 Query: 328 GGDKTVVVFRRGNII 342 GGD TVVV RRG +I Sbjct: 241 GGDNTVVVLRRGPVI 255 >gi|332976102|gb|EGK12970.1| hypothetical protein HMPREF9374_1123 [Desmospora sp. 8437] Length = 462 Score = 235 bits (599), Expect = 7e-60, Method: Composition-based stats. Identities = 83/314 (26%), Positives = 134/314 (42%), Gaps = 31/314 (9%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +P WQ ++A+ + + A+ AG G+GKT AW +LW + TRP Sbjct: 32 EPDEWQDIALQALADNQ------------RVAVRAGHGVGKTATEAWAVLWFLLTRPFPK 79 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLP-HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 I C A ++ QL + LW E++KWL P + E Q + + Sbjct: 80 IPCTAPTKPQLMDVLWPEIAKWLMNAPELAPYVEWQKTRVVMKQYEERW----------- 128 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 + +P+ G H H + DEASG + I ++I G T Sbjct: 129 ---FATARTSNKPENMAGFHEEH-LLFVIDEASGVDNAIFETIDGALTTAGSKLVM--FG 182 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 N R NG FYD F+ + + Y+I + + + +YG DSD+ R+ + G+F Sbjct: 183 NPTRTNGVFYDAFHQDRDLYWTYKISCLDSKMASKDYARNMARKYGEDSDIYRVRVQGEF 242 Query: 289 PQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348 PQ + ++FIP +E+A R+ L +G D+A G D+TV+ R G + + + Sbjct: 243 PQGDPDSFIPLELVEDARVRDLEWIDEDELHIGVDVARFGSDETVLAARIGPVAFRLDRY 302 Query: 349 SAKL-IQETNQEGC 361 + ET Sbjct: 303 GGRTPTTETVGRVL 316 >gi|209901239|ref|YP_002290878.1| putative terminase B [Clostridium phage phiCD27] gi|199612120|gb|ACH91293.1| putative terminase B [Clostridium phage phiCD27] Length = 469 Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 82/316 (25%), Positives = 135/316 (42%), Gaps = 17/316 (5%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 ++ P + + + S+V + K +I +G+G+GKT L + +W +STR Sbjct: 11 CYWDNPVWFAEDMLNFKADKWQSDVLMALAQTPKVSIRSGQGVGKTGLESIATVWYLSTR 70 Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 P ++ A + QL + LWAE++KWLS E ++ G+ Sbjct: 71 PFPKVVATAPTRQQLYDVLWAEIAKWLSNSKVEKLLEWTKTKVYMKGFEER--------- 121 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225 + T RT +P+ G H M DEASG D I ++ILG + Sbjct: 122 ---WWATARTA--VKPENMQGFH-EDYMLFVVDEASGVADPIMEAILGTLSGAENKLLLC 175 Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285 N R +G FYD N + +K +++ + E + +Y SD R+ +L Sbjct: 176 --GNPTRTSGTFYDSHNRDRDLYKTFKVSSLDSPRTSKDNIEMLKRKYHEGSDPWRVRVL 233 Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHI 345 G+FP+ E ++ I +E + RE L +G DIA G D+T++ R G + + Sbjct: 234 GEFPKGESDSLISLEAVETSTIREVNISNDYILNIGADIARYGDDETIIAPRIGGKVFDL 293 Query: 346 FDWSAKLIQETNQEGC 361 +S K ET Sbjct: 294 LTYSKKDTMETVGNIL 309 >gi|54302246|ref|YP_132239.1| terminase large subunit [Photobacterium profundum SS9] gi|46915667|emb|CAG22439.1| hypothetical protein PBPRB0566 [Photobacterium profundum SS9] Length = 513 Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 93/331 (28%), Positives = 142/331 (42%), Gaps = 25/331 (7%) Query: 25 VLSFKNFVMRFFPW------GIKGKPLEHFS------QPHRWQLEFMEAVDVHCHSN--V 70 FVM +PW I P S P W E + + N Sbjct: 21 YDDPLGFVMYAYPWDTDPDLQIVKLPEPWASKYDSVYGPDAWFCEMCDQLQEVIRKNDFN 80 Query: 71 NNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK 130 F +IS+G GIGK+ ++W++ +++STRP + +N+ QL+ W E+ K Sbjct: 81 GVDPVDAFLYSISSGHGIGKSCASSWLIHFVMSTRPNSKGVVTSNTSEQLRTKTWGELGK 140 Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190 W L ++HWF + + + ++ + ++ + + +T EE ++F G H Sbjct: 141 WTKKLINKHWFVYNNGKGNMNFYHKDY--------AETWRVDAQTCREENSESFAGLHCA 192 Query: 191 HGM-AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249 DEAS PD I + G T+ FW + N R +G F + + + W Sbjct: 193 SSTPWYLFDEASAVPDKIWEVAEGGLTDG--EPFWFVFGNPTRNSGRFRECWRRFRQRWN 250 Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309 R QID+ TV+ + S YG DSD R+ + G FP N I +E AMSR Sbjct: 251 RKQIDSSTVQVTNKKKISEWESDYGEDSDFYRVRVKGVFPSASSNQKISGALLEAAMSRT 310 Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGN 340 A +P +M D+A GGD V FR G Sbjct: 311 AHVIPGSPRVMSLDVARGGGDNCVFRFRHGL 341 >gi|261208032|ref|ZP_05922709.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289567088|ref|ZP_06447483.1| conserved hypothetical protein [Enterococcus faecium D344SRF] gi|260077749|gb|EEW65463.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289161103|gb|EFD09008.1| conserved hypothetical protein [Enterococcus faecium D344SRF] Length = 471 Score = 232 bits (590), Expect = 8e-59, Method: Composition-based stats. Identities = 81/311 (26%), Positives = 140/311 (45%), Gaps = 32/311 (10%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P WQ + + K ++ +G+G+GKT L A +LW ++ RP + Sbjct: 34 PDEWQENVLNDLAEFS------------KVSVRSGQGVGKTALEAGAILWFLTCRPYAKV 81 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 I A + QL + LWAEV+KWL+ ++ + ++ G DS+ + Sbjct: 82 IATAPTMKQLYDVLWAEVAKWLNDSLIKNLLKWTKTKIYMVG------------DSERWF 129 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 T RT ++ P+ G H H M + DEASG D I ++ILG + + N Sbjct: 130 ATARTATK--PENMQGFHEDH-MLIVVDEASGVSDPIMEAILGTLSGFDNKLLMC--GNP 184 Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290 + G FYD N + ++ +++ + + + E I+ +YG +SDVAR+ I G+FP+ Sbjct: 185 NNIEGVFYDSHNSDRDKYRVHKVSSYDSKRTNKDNIEMILKKYGKESDVARVRIFGEFPK 244 Query: 291 QEVNNFIPHNYIEEAMSREAI---DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347 +++FI +E A ++ + +G D+A G D T++ R Sbjct: 245 GALDSFISLETVELATEKQISDSLVNKTTVAHIGVDVARYGDDSTILFPRIATRALEYEK 304 Query: 348 WSAKLIQETNQ 358 +S + ET Sbjct: 305 YSKRSTMETTG 315 >gi|257883493|ref|ZP_05663146.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|294614775|ref|ZP_06694675.1| hypothetical protein EfmE1636_0865 [Enterococcus faecium E1636] gi|294622490|ref|ZP_06701512.1| conserved hypothetical protein [Enterococcus faecium U0317] gi|257819151|gb|EEV46479.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|291592387|gb|EFF23996.1| hypothetical protein EfmE1636_0865 [Enterococcus faecium E1636] gi|291598037|gb|EFF29147.1| conserved hypothetical protein [Enterococcus faecium U0317] Length = 471 Score = 232 bits (590), Expect = 8e-59, Method: Composition-based stats. Identities = 81/311 (26%), Positives = 140/311 (45%), Gaps = 32/311 (10%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P WQ + + K ++ +G+G+GKT L A +LW ++ RP + Sbjct: 34 PDEWQENVLNDLAEFS------------KVSVRSGQGVGKTALEAGAILWFLTCRPYAKV 81 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 I A + QL + LWAEV+KWL+ ++ + ++ G DS+ + Sbjct: 82 IATAPTMKQLYDVLWAEVAKWLNDSLIKNLLKWTKTKIYMVG------------DSERWF 129 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 T RT ++ P+ G H H M + DEASG D I ++ILG + + N Sbjct: 130 ATARTATK--PENMQGFHEDH-MLIVVDEASGVSDPIMEAILGTLSGFDNKLLMC--GNP 184 Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290 + G FYD N + ++ +++ + + + E I+ +YG +SDVAR+ I G+FP+ Sbjct: 185 NNIEGVFYDSHNSDRDKYRVHKVSSYDSKRTNKDNIEMILKKYGKESDVARVRIFGEFPK 244 Query: 291 QEVNNFIPHNYIEEAMSREAI---DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347 +++FI +E A ++ + +G D+A G D T++ R Sbjct: 245 GALDSFISLETVELATEKQISDSLVNKTTVAHIGVDVARYGDDSTILFPRIATRALEYEK 304 Query: 348 WSAKLIQETNQ 358 +S + ET Sbjct: 305 YSKRSTMETTG 315 >gi|153810665|ref|ZP_01963333.1| hypothetical protein RUMOBE_01049 [Ruminococcus obeum ATCC 29174] gi|149833061|gb|EDM88143.1| hypothetical protein RUMOBE_01049 [Ruminococcus obeum ATCC 29174] Length = 469 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 88/321 (27%), Positives = 145/321 (45%), Gaps = 17/321 (5%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L + + P + + ++A + S ++ +G GIGK+ + AW ++W + T Sbjct: 8 LYYANHPVEFVQDILKADPDPEQKKILRSLVENQMTSVRSGHGIGKSAVEAWSVIWFMCT 67 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 P I C A ++ QL + LWAE+SKW + S + + M Sbjct: 68 HPYPKIPCTAPTQHQLFDILWAEISKWKRNNK-----TLDSELIWTK------EKLYMKG 116 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224 ++ + RT S PD G H H M DEASG D I + +LG + Sbjct: 117 HAEEWFAVARTAS--TPDALQGFHAEH-MLYIIDEASGVEDKIFEPVLGALSTPGAKLLM 173 Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 N +L+G+FYD N E + + ID R + F + II+ YG DSDV R+ + Sbjct: 174 C--GNPTQLSGFFYDSHNKNREQYSTFHIDGRNSTRVSQEFVQTIINMYGEDSDVFRVRV 231 Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI-MGCDIAGEGGDKTVVVFRRGNIIE 343 G FP E + +IP +E++++ E + +I +GCD+A G DKTV+ +R ++ Sbjct: 232 AGDFPLAEDDIYIPLPLVEKSIATEYFPRRHPQIIHIGCDVARFGTDKTVIGYRTDEKVQ 291 Query: 344 HIFDWSAKLIQETNQEGCPVG 364 + +T + +G Sbjct: 292 FFKKRVGQDTMKTADDIVSLG 312 >gi|255282256|ref|ZP_05346811.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469] gi|255267204|gb|EET60409.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469] Length = 506 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 79/355 (22%), Positives = 143/355 (40%), Gaps = 38/355 (10%) Query: 12 EQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFS----QPHRWQLEFMEAVDVHCH 67 E+ + + + + F P K L +P WQ + + + Sbjct: 8 EEMQMDKELPPNRIRR-RKFFRERIPRYRKDPVLYAREVLQFEPDEWQRDALMDLAEES- 65 Query: 68 SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127 + A+ +G+G+GKT + A +LW +S ++ A + QL + LW+E Sbjct: 66 -----------RVAVKSGQGVGKTGIEAVAVLWFLSCFRYARVVATAPTRQQLHDVLWSE 114 Query: 128 VSKWLSMLP-HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 ++KW P + ++ G+ K + RT ++ P+ G Sbjct: 115 IAKWQERSPLLKAILRWTKTYVYVKGYE------------KRWFAVARTATK--PENMQG 160 Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246 H + M DEASG D I +++LG + N N R G FYD F Sbjct: 161 FHEDN-MLFIVDEASGVADPIMEAVLGTLSGGNNKLLMC--GNPTRTTGTFYDAFTKDRS 217 Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306 + + + + D + +I +YG DS++ R+ + G FP+Q+ + FI I++ Sbjct: 218 IFACHTVSSLDSSRTDKNNIDALIRKYGEDSNLVRVRVKGLFPKQDDDVFISQELIDQCT 277 Query: 307 SREAIDDLY---APLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQ 358 SR+ A +I+G D+A G D+TV+ I+ + + + + T Sbjct: 278 SRQYELPESRGMAQVILGVDVARYGNDETVIYRNFKGRIKMVRNRRGQNLMATAG 332 >gi|319956916|ref|YP_004168179.1| hypothetical protein Nitsa_1177 [Nitratifractor salsuginis DSM 16511] gi|319419320|gb|ADV46430.1| hypothetical protein Nitsa_1177 [Nitratifractor salsuginis DSM 16511] Length = 462 Score = 224 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 86/303 (28%), Positives = 138/303 (45%), Gaps = 28/303 (9%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P + Q++ + A+D K +I +G G GKTTL AW++LW R I Sbjct: 28 PTKQQMKAIRAIDQGKK-----------KISIRSGHGTGKTTLLAWIVLWWGLGREDAKI 76 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 A + QL + L E+ KW +P ++ E++ ++ + Sbjct: 77 PMTAPTGHQLYDLLMPEIRKWREKMPVQYQNEVE-------------VKTEKIDFANGNF 123 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 RT +++P+ G H T+ +A DEASG P +I + G T + IM +N Sbjct: 124 AVPRTARKDQPEALQGFHATN-LAFIIDEASGIPQVIFEVAEGAMT--GESTLVIMAANP 180 Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290 R G+FYD + W+ +Q + E + + E +YG DSDV R+ I G+FP+ Sbjct: 181 TRTEGYFYDSHHKNRWQWECFQFNAEESENVSKEWIEEKKRQYGEDSDVYRVRIKGEFPR 240 Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350 Q N +++A +RE +DD A + G D+A G DK+V+ R+G I S Sbjct: 241 QSSNAVFSLQEVDDATTREIVDDSGAE-VWGLDVADFGDDKSVLAKRKGKHFHEITARSG 299 Query: 351 KLI 353 + Sbjct: 300 LTL 302 >gi|323486060|ref|ZP_08091391.1| hypothetical protein HMPREF9474_03142 [Clostridium symbiosum WAL-14163] gi|323400627|gb|EGA92994.1| hypothetical protein HMPREF9474_03142 [Clostridium symbiosum WAL-14163] Length = 476 Score = 222 bits (564), Expect = 8e-56, Method: Composition-based stats. Identities = 82/312 (26%), Positives = 137/312 (43%), Gaps = 31/312 (9%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +P WQ + + + K AI +G+G+GKT + A +LW + P Sbjct: 35 EPDDWQKQALMDLAE------------SPKVAIKSGQGVGKTGMEAVALLWFLCCYPYPR 82 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLP-HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 I+ A ++ QL + LW+EVSKW+S P + ++ G K Sbjct: 83 IVATAPTKQQLHDVLWSEVSKWMSKSPLLSDILKWTKTYIYMVGNE------------KR 130 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 + RT ++ P+ G H + M DEASG D I ++ILG + N Sbjct: 131 WFAVARTATK--PENMQGFHEDN-MLFIVDEASGVADPIMEAILGTLSGANNKLLMC--G 185 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 N R +G FYD FN+ ++ + + + + + E +I +YG DS+V + + G+F Sbjct: 186 NPTRTSGTFYDAFNVDRSIYRCHTVSSADSKRTNKQNIESLIRKYGKDSNVVLVRVFGEF 245 Query: 289 PQQEVNNFIPHNYIEEAMSREAIDD-LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347 P+QE + FI + +E + DD + G D+A G D+TV+ G I Sbjct: 246 PKQEDDVFIALSIVEHCCMLDLPDDVPIKRISFGVDVARYGSDETVIAKNVGGRITLPVS 305 Query: 348 WSAKLIQETNQE 359 + + + T + Sbjct: 306 FRGQSLMTTVGK 317 >gi|160940775|ref|ZP_02088117.1| hypothetical protein CLOBOL_05669 [Clostridium bolteae ATCC BAA-613] gi|158436295|gb|EDP14062.1| hypothetical protein CLOBOL_05669 [Clostridium bolteae ATCC BAA-613] Length = 484 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 78/296 (26%), Positives = 125/296 (42%), Gaps = 19/296 (6%) Query: 42 GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101 L + P + + + A ++ S ++ +G GIGK+ + AW ++W Sbjct: 5 DAVLFYADNPIYFVEDVIRAKPDEKQRDILRSLRDYPMTSVRSGHGIGKSAVEAWSVIWY 64 Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP-HRHWFEMQSLSLHPSGWYAELLEQ 160 + TRP I C A +E QL + LWAE+SKW+ P R L+ G E Sbjct: 65 MCTRPFPKIPCTAPTEHQLMDVLWAEISKWMRNNPALRDDLIWTKEKLYMQGHPEEW--- 121 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220 + P+ G H H + DEASG D + + +LG T + Sbjct: 122 -----------FAVPRTATNPEALQGFHAEH-VLYIIDEASGVSDKVFEPVLGAMTGEDA 169 Query: 221 NRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280 N RL G+FYD + E + +D R + + F + II +G DSDV Sbjct: 170 KLLM--MGNPTRLAGFFYDSHHRNREQYSAIHVDGRDSQHVSRTFVQKIIDMFGEDSDVF 227 Query: 281 RIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 R+ + GQFP+ ++ I + EEA + + + +G D+A G D + + Sbjct: 228 RVRVAGQFPKSTPDSLIAMEWCEEAANLQV-YAPGGQIDIGVDVARYGDDSSALYP 282 >gi|289578588|ref|YP_003477215.1| hypothetical protein Thit_1395 [Thermoanaerobacter italicus Ab9] gi|289528301|gb|ADD02653.1| conserved hypothetical protein [Thermoanaerobacter italicus Ab9] Length = 460 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 78/352 (22%), Positives = 132/352 (37%), Gaps = 62/352 (17%) Query: 22 AECVLSFKNFVMRFF---PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78 FV PW Q E ++AV H Sbjct: 13 DRARNDPVFFVRCVLKGDPWEK--------------QEEILKAVRDH------------K 46 Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + A+ A G+GKT + AW+ LW + T +I A + Q++N LW E+ + Sbjct: 47 RVAVRACHGVGKTKVAAWVALWFLYTHHNSKVITTAPTWHQVENLLWREIHAAHAASRI- 105 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 ++L+ + + + S ++P+ F G H H + D Sbjct: 106 -------------PLGGKVLQTQIELGEQW---FALGLSTDKPERFQGFHAEHI-LLIVD 148 Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 EASG + GF T + + N +L+G FY+ F P + + I Sbjct: 149 EASGVEQYTFDAAEGFLTSIGAKLL--LIGNPTQLSGEFYNAFRSP--LYHKIHISAFDS 204 Query: 259 EG-----------IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307 + + E ++G DS + +LG+FP+Q + IP +IE A Sbjct: 205 PNLKAGKIVRPYLVTPEWVEDKRLKWGEDSPLWYSRVLGEFPEQGNDTLIPLAWIEAAQQ 264 Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359 R + + P+ +G D+A G D TV++ RRG+ E ++ + E + Sbjct: 265 RWHMTEAGEPVEIGADVARYGTDTTVIMLRRGDKAEIVYQLRGQDTMEVTGK 316 >gi|308069786|ref|YP_003871391.1| hypothetical protein PPE_03030 [Paenibacillus polymyxa E681] gi|305859065|gb|ADM70853.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 452 Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 76/309 (24%), Positives = 121/309 (39%), Gaps = 30/309 (9%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P WQ + + + + ++ +G+G+GKT L A LW +S P + Sbjct: 6 PDDWQASTLMDLANN------------PRVSVRSGQGVGKTGLEAATALWFLSCFPYPKV 53 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLP-HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 IC A + QL + LWAE++KW S P + + ++ + + Sbjct: 54 ICTAPTRQQLHDVLWAEINKWQSKSPVLKRILKWTKTKIYMKNYEER------------W 101 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 T RT ++ P+ G H M DEASG D I ++ILG + N Sbjct: 102 FATARTATK--PENMQGLH-EDYMLFIVDEASGVADPIMEAILGTLSGEFNKILMC--GN 156 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 + +G FYD N D+K ++ + +YG SDV R+ + G+FP Sbjct: 157 PTKTSGVFYDSHNKDRADYKTRKVSCLDSPRTSKDNIAMLKRKYGEGSDVWRVRVEGEFP 216 Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS 349 + + FI E A ++ L +G D+A G D+T + G I Sbjct: 217 RGGSDTFISLEVAEFAAKEVKLEPTGDMLTIGVDVARFGDDETSMFAGIGPRIVGEHHHF 276 Query: 350 AKLIQETNQ 358 K T Sbjct: 277 KKGTMVTAG 285 >gi|266623290|ref|ZP_06116225.1| putative terminase B protein [Clostridium hathewayi DSM 13479] gi|288864932|gb|EFC97230.1| putative terminase B protein [Clostridium hathewayi DSM 13479] Length = 484 Score = 219 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 71/296 (23%), Positives = 132/296 (44%), Gaps = 19/296 (6%) Query: 42 GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101 L + +P + + + ++ S ++ +G G+GK+ + +W ++W Sbjct: 5 DAVLFYADEPIYFVEDIIRVTPDQKQRDILRSLRDYPMTSVRSGHGVGKSAVESWSVIWF 64 Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP-HRHWFEMQSLSLHPSGWYAELLEQ 160 + TRP I C A ++ QL + LWAE+SKWL P ++ ++ +G+ E Sbjct: 65 LCTRPFPKIPCTAPTQHQLYDILWAEISKWLRNNPELKNDIIWTQQRVYMNGYPEEW--- 121 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220 + P+ G H H + DEASG D + + +LG T + Sbjct: 122 -----------FAVPRTATNPEALQGFHAEH-VLYIIDEASGVSDKVFEPVLGAMTGEDA 169 Query: 221 NRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280 N RL+G+F+D + ++ ID R + ++ F + II+ +G+DSDV Sbjct: 170 KLLM--MGNPTRLSGFFFDSHHKSRSEYSAMHIDGRDSQHVNQKFVQKIINMFGMDSDVF 227 Query: 281 RIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 R+ + GQFP+ ++ I ++ E A + + + +G D+A G D + + Sbjct: 228 RVRVAGQFPKSTPDSLIMMDWCEAATQLKPE-TVRNRVDIGVDVARYGDDSSALYP 282 >gi|253578914|ref|ZP_04856185.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849857|gb|EES77816.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 473 Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats. Identities = 76/313 (24%), Positives = 136/313 (43%), Gaps = 33/313 (10%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +P WQ + + + K +I +G+G+GKT L A + LW ++ P Sbjct: 17 EPDEWQAQAARDLAAN------------PKVSIKSGQGVGKTGLEAAVFLWFVTCFPHPR 64 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLP-HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 I+ A ++ QL + LW+E+SKW+S + ++ G + K Sbjct: 65 IVATAPTKQQLHDVLWSEISKWMSKSELLSILLKWTKTYVYMVG------------EEKR 112 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 + RT ++ P+ G H + M DEASG D I ++ILG + N Sbjct: 113 WFGVARTATK--PENMQGFHEDN-MLFIVDEASGVADPIMEAILGTLSGANNKLLLC--G 167 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 N + +G FYD +K + + + + + ++ +YG DS+V R+ + G+F Sbjct: 168 NPTKTSGTFYDSHTRDRALYKCHTVSSMDSTRTNKENIDSLVRKYGWDSNVVRVRVRGEF 227 Query: 289 PQQEVNNFIPHNYIEEAMSREAIDDLYAP---LIMGCDIAGEGGDKTVVVFRRGNIIEHI 345 P QE + FIP + IE+ S+ D + +G D+A G D+T++ + + Sbjct: 228 PNQEDDVFIPLSLIEQCSSKLLELDDADGMQFVSLGVDVARFGDDETIIYRNYHGHCKIV 287 Query: 346 FDWSAKLIQETNQ 358 + + + T Sbjct: 288 RNRRGQNLMATVG 300 >gi|167767949|ref|ZP_02440002.1| hypothetical protein CLOSS21_02492 [Clostridium sp. SS2/1] gi|167710278|gb|EDS20857.1| hypothetical protein CLOSS21_02492 [Clostridium sp. SS2/1] gi|291560988|emb|CBL39788.1| hypothetical protein CL2_30180 [butyrate-producing bacterium SSC/2] Length = 473 Score = 212 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 80/343 (23%), Positives = 132/343 (38%), Gaps = 36/343 (10%) Query: 20 MHAECVLSFKNFVMRFFPWGIKGKPLEH---FSQPHRWQLEFMEAVDVHCHSNVNNSNPT 76 M + F V W F P WQ E A+ + Sbjct: 1 MDDRVLHDFL--VESIPLWQQNPVQFFEEVLFFYPDEWQKEAAFALRDNS---------- 48 Query: 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136 K I +G+G+GKT A +LW +S ++ A + QL + LWAEVSKW S P Sbjct: 49 --KVTIKSGQGVGKTGFEAATLLWFLSCFENARVVATAPTLHQLNDVLWAEVSKWQSKSP 106 Query: 137 -HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 + + + + + RT + P+ G H + M Sbjct: 107 LLKEILQWTKTKISM------------IGSKERWYAVARTAT--TPENMQGFHEDN-MLF 151 Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255 DEASG D I ++ILG T N N + +G FYD + + +++ Sbjct: 152 IVDEASGVADPIMEAILGTLTGSNNKLLLC--GNPTKASGTFYDSHTSDRKLYYCITVNS 209 Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY 315 + + + +I +YG +S+V R+ + G FP+Q+ + ++P +E ++ E Sbjct: 210 AESKRTNKDNIDSLIRKYGEESNVVRVRVKGLFPKQDDDVYMPLEMLEASIILE-EIPPA 268 Query: 316 APLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQ 358 +G D+A G D TV+ N I + + +T Sbjct: 269 DICTLGVDVARFGDDDTVIARNMNNKITLEKIRHGQDLMKTVG 311 >gi|332980681|ref|YP_004462122.1| hypothetical protein Mahau_0077 [Mahella australiensis 50-1 BON] gi|332698359|gb|AEE95300.1| hypothetical protein Mahau_0077 [Mahella australiensis 50-1 BON] Length = 486 Score = 205 bits (521), Expect = 8e-51, Method: Composition-based stats. Identities = 72/370 (19%), Positives = 123/370 (33%), Gaps = 75/370 (20%) Query: 20 MHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRW--QLEFMEAVDVHCHSNVNNSNPTI 77 + + FV+ W Q++ + AV + Sbjct: 10 LAQKMQNDPVWFVI-------------EILGTRPWKKQIDIISAVRDN------------ 44 Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + A+ + G GK+ + ++LW + + ++ A + Q++ +W EV Sbjct: 45 PRTAVRSCHGAGKSFIAGQVILWFLYSFYPSIVLSTAPTWRQVEKLIWKEVRASYRRSKV 104 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + E S PD F G H + V Sbjct: 105 PLGGNLLPKRPEIQIIQDEWY--------------AVGLSTNEPDRFQGFHEENI-LVVV 149 Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257 DEA+G P+ I ++I G T + + N + G FY+ F P W+ I T Sbjct: 150 DEAAGVPEEIFEAIEGVLTSEHARLL--LLGNPTSVGGTFYNAFRTP--GWENISISAFT 205 Query: 258 VEGID-----------------------------SGFHEGIISRYGLDSDVARIEILGQF 288 + R+G +S + +LGQF Sbjct: 206 TPNFTAFGITEDDIINKTWESKITNSLPNPKLITPAWVADKYRRWGPNSPAYQARVLGQF 265 Query: 289 PQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348 P + + IP +IE AM+R P+ +G D+A G DKTV+ RRG + + + Sbjct: 266 PSEGEDTLIPLAWIEAAMARWEDTPEGEPIEIGVDVARFGSDKTVIAARRGQKVLPLNVY 325 Query: 349 SAKLIQETNQ 358 + + ET Sbjct: 326 AKQDTMETVG 335 >gi|83593922|ref|YP_427674.1| hypothetical protein Rru_A2590 [Rhodospirillum rubrum ATCC 11170] gi|83576836|gb|ABC23387.1| hypothetical protein Rru_A2590 [Rhodospirillum rubrum ATCC 11170] Length = 505 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 67/330 (20%), Positives = 119/330 (36%), Gaps = 34/330 (10%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P Q + A+ P K + AG G+GKTT A + W + Sbjct: 21 PTAQQAGLLSAIA-----------PAGAKVTVRAGHGVGKTTATAAAIWWHLECFDYSKT 69 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE-QSMGIDSKHY 169 C A + +QL+ LW+E+++ R +L +A + + + Sbjct: 70 PCTAPTASQLEQILWSELARLRRRADARAQGTGLPAALRLEALFAVSGRAIADRGTPREW 129 Query: 170 TITCRTYSEERPDTFVGPHNTHGMA------------------VFNDEASGTPDIINKSI 211 + RT ++PD G H + +EASG PD + + Sbjct: 130 FVVARTARRDQPDALQGFHASDIDLEAGAGPRLSAKSGGAALMFVIEEASGVPDAVFEVA 189 Query: 212 LGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271 G + + N R G+F + ++ +D G+ G++ Sbjct: 190 EGALSSPGARLLMV--GNPTRNTGFFARSHKRDRASFTALRLRCADSPLVDPGYRAGLVR 247 Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGG 329 +YG +S+V R+ G FP+Q+ + I E A++R +G D+A G Sbjct: 248 KYGAESNVVRVRADGAFPRQDDDVLIALETAEAALARPLPARMATEDERRLGVDVARFGD 307 Query: 330 DKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359 D+TV + R G ++ I + + Sbjct: 308 DRTVFLLRIGPVVGAIEVTAGRDTMAVAGR 337 >gi|48697461|ref|YP_024846.1| Pas60 [Actinoplanes phage phiAsp2] gi|47679679|gb|AAT36808.1| Pas60 [Actinoplanes phage phiAsp2] Length = 492 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 71/329 (21%), Positives = 120/329 (36%), Gaps = 32/329 (9%) Query: 49 SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-- 106 P W + ++ + ++ P + A+ G+GK+ A ++ W +TR Sbjct: 21 DSPTAWAADCLDVRLAGYQGEILDAVPRERRVAVRGPHGLGKSFSGAILVNWFATTRDLM 80 Query: 107 --GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 II A++ L+ LW E+ KW + ++L + + + + Sbjct: 81 GKDWKIITTASAWRHLEVYLWPEIHKWAGR--------INFVALGRAPYNPRTELLDLRL 132 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN----P 220 H T +P+ G H + DEA P SI G F+ Sbjct: 133 KLTHGAATAVAS--NQPERIEGAHAEE-LLYLLDEAKIVPPATWDSIEGAFSNAGVDVAD 189 Query: 221 NRFWIMTSNTRRLNGWFYDIFNIP--LEDWKRYQIDTRT---VEGIDSGFHEGIISRYGL 275 N + S +G FYDI EDW + I + + S++G Sbjct: 190 NAYAFAMSTPGAPSGRFYDIHRRAPGYEDWWTRHVTLEEAIASGRISRAWADQRRSQWGS 249 Query: 276 DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD------LYAPLIMGCDIAGEGG 329 DS V +LG+F + ++ IP ++E A+ R D PL G D+ GG Sbjct: 250 DSAVFHNRVLGEFHASDEDSVIPLAWLEAAIERWHEWDRQGRPSPGGPLWTGVDVGR-GG 308 Query: 330 DKTVVVFRRGNIIEHIFDWSAKLIQETNQ 358 D+TV+ R G + + + T Sbjct: 309 DETVLAARDGWAVT-LETNRRRDTMATVG 336 >gi|322656964|gb|EFY53248.1| DNA packaging protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] Length = 411 Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 59/273 (21%), Positives = 115/273 (42%), Gaps = 21/273 (7%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + +++G G GK++L A ++L + P +I +AN Q+K ++ V ++ + R Sbjct: 56 RTTVTSGHGTGKSSLTAMLLLIFMILFPDARVIIVANKIGQVKTGVFKYVKQYWANAVKR 115 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 H + L + +Y + + + C+ Y + G H H + + D Sbjct: 116 HGWLQTYFVLSDTMFYERSRK-------GIWEVLCKGYRLGNEEALAGEHAAH-LLLILD 167 Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-------IPLEDWKRY 251 EASG D + G TE + +M S R +G+FYD + P W Sbjct: 168 EASGISDKAIGVMTGALTEEDNR--MLMLSQPTRPSGYFYDSHHSQAKTPDNPKGIWTAI 225 Query: 252 QIDTRTVEGIDSGFH-EGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310 +++ + F + ++ G DS +++LGQFP++ + + + A R+ Sbjct: 226 VLNSEESPFVTPQFIKQKLLEYGGRDSIEYMVKVLGQFPREINGYLLGRDECDRAARRKV 285 Query: 311 IDDLYAPLIMGCDIAGEGGDKTV--VVFRRGNI 341 + + + D+ G G DK+V + G+ Sbjct: 286 LLEKNWGWVATADV-GNGRDKSVLNICKVSGHR 317 >gi|168467778|ref|ZP_02701615.1| DNA pacase B subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195629119|gb|EDX48493.1| DNA pacase B subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 494 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 61/328 (18%), Positives = 117/328 (35%), Gaps = 36/328 (10%) Query: 20 MHAECVLSFKN---FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPT 76 M C+ + + W I + P WQ + + + Sbjct: 1 MARSCITDPRWRELVAQYRYDW-IAAADVMFGKTPT-WQQD---QIIESVQEPGS----- 50 Query: 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136 K ++S+G G GK+ + + M++ I PG I +AN Q+ ++ + Sbjct: 51 --KTSVSSGHGTGKSDMTSIMIMLFIIMFPGARAIIVANKIQQVMTGIFKYLKI------ 102 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGI-DSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 +W S + ++ I +T+ + + + G H H + Sbjct: 103 --NWSTATSRFPWLAEYFVLTDTSFYEITSKGVWTVVPKGFRLGNEEALAGEHADH-LLY 159 Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED-------W 248 DEASG D + G T + + S R +G+FYD + + + Sbjct: 160 IIDEASGVSDKAFGIMTGALTGKDNRIL--LLSQPTRPSGYFYDTHHKLAKRPGNPNGIY 217 Query: 249 KRYQIDTRTVEGIDSGFHE-GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307 +++ + F + + G DS + I++ G FP+ + + + +E A Sbjct: 218 TAITLNSEESPLVTPEFIKMKLAEYGGRDSPMYLIKVRGLFPKTQDGFLLGRDEVERASR 277 Query: 308 REAIDDLYAPLIMGCDIA-GEGGDKTVV 334 R+ I D+A G G DK+V+ Sbjct: 278 RKVKIAKGWGWIACVDVAGGTGRDKSVI 305 >gi|56266643|gb|AAV84926.1| DNA pacase B subunit [Enterobacteria phage phiW39] Length = 494 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 60/328 (18%), Positives = 118/328 (35%), Gaps = 36/328 (10%) Query: 20 MHAECVLSFKN---FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPT 76 M CV + + + W L + WQ + + + + Sbjct: 1 MARSCVTDPRWRELVALYRYDWIAAADVLFGKTP--TWQQDLI----------IESVQEQ 48 Query: 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136 K ++S+G G GK+ + + M++ I PG I +AN Q+ ++ + Sbjct: 49 GSKTSVSSGHGTGKSDMTSIMIMLFIIMYPGARAIIVANKIQQVMTGIFKYIKI------ 102 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGI-DSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 +W S + ++ I +T+ + + + G H H + Sbjct: 103 --NWATATSRFPWLADYFVLTETAFYEITGKGVWTVVPKGFRLGSEEALAGEHADH-LLY 159 Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED-------W 248 DEASG D I G T + + S R +G+FYD + + + Sbjct: 160 IIDEASGVSDRAFGIITGALTGQDNRIL--LLSQPTRPSGYFYDTHHKLAKRPGNPDGVY 217 Query: 249 KRYQIDTRTVEGIDSGFHE-GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307 +++ + F + + G D+ + I++ G FP+ + + + +E A Sbjct: 218 TAITLNSEESPLVTPAFIKMKLAEYGGRDNPMYMIKVRGLFPKSQDGFLLGRDEVERATR 277 Query: 308 REAIDDLYAPLIMGCDIA-GEGGDKTVV 334 R+ + D+A G G DK+V+ Sbjct: 278 RKVKIAKGWGWLACVDVAGGTGRDKSVI 305 >gi|324111095|gb|EGC05081.1| terminase B protein [Escherichia fergusonii B253] Length = 494 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 59/328 (17%), Positives = 117/328 (35%), Gaps = 36/328 (10%) Query: 20 MHAECVLSFKN---FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPT 76 M CV + + + W L + WQ + + + + Sbjct: 1 MARSCVTDPRWRELVALYRYDWIAAADVLFGKTP--TWQQDLI----------IESVQEQ 48 Query: 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136 K ++S+G G GK+ + + M++ I PG I +AN Q+ ++ + Sbjct: 49 GSKTSVSSGHGTGKSDMTSIMIMLFIIMYPGARAIIVANKIQQVMTGIFKYIKI------ 102 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMG-IDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 +W S + ++ +T+ + + + G H H + Sbjct: 103 --NWATATSRFPWLADYFVLTETAFYEVTGKGVWTVVPKGFRLGSEEALAGEHADH-LLY 159 Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED-------W 248 DEASG D I G T + + S R +G+FYD + + + Sbjct: 160 IIDEASGVSDRAFGIITGALTGQDNRIL--LLSQPTRPSGYFYDTHHKLAKRPGNPDGVY 217 Query: 249 KRYQIDTRTVEGIDSGFHE-GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307 +++ + F + + G D+ + I++ G FP+ + + + +E A Sbjct: 218 TAITLNSEESPLVTPAFIKMKLAEYGGRDNPMYMIKVRGLFPKSQDGFLLGRDEVERATR 277 Query: 308 REAIDDLYAPLIMGCDIA-GEGGDKTVV 334 R+ + D+A G G DK+V+ Sbjct: 278 RKVKIAKGWGWLACVDVAGGTGRDKSVI 305 >gi|312964323|ref|ZP_07778627.1| terminase B protein [Escherichia coli 2362-75] gi|331655801|ref|ZP_08356790.1| terminase B protein (PACase B protein) (DNA packaging B protein) [Escherichia coli M718] gi|312291036|gb|EFR18910.1| terminase B protein [Escherichia coli 2362-75] gi|323186470|gb|EFZ71817.1| terminase B protein [Escherichia coli 1357] gi|323969205|gb|EGB64507.1| terminase B protein [Escherichia coli TA007] gi|325495624|gb|EGC93488.1| DNA pacase B subunit [Escherichia fergusonii ECD227] gi|331046575|gb|EGI18664.1| terminase B protein (PACase B protein) (DNA packaging B protein) [Escherichia coli M718] Length = 494 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 59/328 (17%), Positives = 117/328 (35%), Gaps = 36/328 (10%) Query: 20 MHAECVLSFKN---FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPT 76 M CV + + + W L + WQ + + + + Sbjct: 1 MARSCVTDPRWRELVALYRYDWIAAADVLFGKTP--TWQQDLI----------IESVQEQ 48 Query: 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136 K ++S+G G GK+ + + M++ I PG I +AN Q+ ++ + Sbjct: 49 GSKTSVSSGHGTGKSDMTSIMIMLFIIMYPGARAIIVANKIQQVMTGIFKYIKI------ 102 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMG-IDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 +W S + ++ +T+ + + + G H H + Sbjct: 103 --NWATATSRFPWLADYFVLTETAFYEVTGKGVWTVVPKGFRLGSEEALAGEHADH-LLY 159 Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED-------W 248 DEASG D I G T + + S R +G+FYD + + + Sbjct: 160 IIDEASGVSDRAFGIITGALTGQDNRIL--LLSQPTRPSGYFYDTHHKLAKRPGNPDGVY 217 Query: 249 KRYQIDTRTVEGIDSGFHE-GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307 +++ + F + + G D+ + I++ G FP+ + + + +E A Sbjct: 218 TAITLNSEESPLVTPAFIKMKLAEYGGRDNPMYMIKVRGLFPKSQDGFLLGRDEVERATR 277 Query: 308 REAIDDLYAPLIMGCDIA-GEGGDKTVV 334 R+ + D+A G G DK+V+ Sbjct: 278 RKVKIAKGWGWLACVDVAGGTGRDKSVI 305 >gi|323179619|gb|EFZ65182.1| terminase B protein [Escherichia coli 1180] Length = 453 Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats. Identities = 59/273 (21%), Positives = 115/273 (42%), Gaps = 21/273 (7%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + +++G G GK++L A ++L + P +I +AN Q+K ++ V ++ + R Sbjct: 7 RTTVTSGHGTGKSSLTAMLLLIFMILFPDARVIIVANKIGQVKTGVFKYVKQYWANAVKR 66 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 H + L + +Y + + + C+ Y + G H H + + D Sbjct: 67 HGWLQTYFVLSDTMFYERSRK-------GIWEVLCKGYRLGNEEALAGEHAAH-LLLILD 118 Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-------IPLEDWKRY 251 EASG D + G TE + +M S R +G+FYD + P W Sbjct: 119 EASGISDKAIGVMTGALTEEDNR--MLMLSQPTRPSGYFYDSHHSQAKTPDNPKGIWTAI 176 Query: 252 QIDTRTVEGIDSGFH-EGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310 +++ + F + ++ G DS +++LGQFP++ + + + A R+ Sbjct: 177 VLNSEESPFVTPQFIKQKLLEYGGRDSIEYMVKVLGQFPREINGYLLGRDECDRAARRKV 236 Query: 311 IDDLYAPLIMGCDIAGEGGDKTV--VVFRRGNI 341 + + + D+ G G DK+V + G+ Sbjct: 237 LLEKNWGWVATADV-GNGRDKSVLNICKVSGHR 268 >gi|56266666|gb|AAV84947.1| DNA pacase B subunit [Enterobacteria phage D6] Length = 502 Score = 167 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 59/273 (21%), Positives = 115/273 (42%), Gaps = 21/273 (7%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + +++G G GK++L A ++L + P +I +AN Q+K ++ V ++ + R Sbjct: 56 RTTVTSGHGTGKSSLTAMLLLIFMILFPDARVIIVANKIGQVKTGVFKYVKQYWANAVKR 115 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 H + L + +Y + + + C+ Y + G H H + + D Sbjct: 116 HGWLQTYFVLSDTMFYERSRK-------GIWEVLCKGYRLGNEEALAGEHAAH-LLLILD 167 Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-------IPLEDWKRY 251 EASG D + G TE + +M S R +G+FYD + P W Sbjct: 168 EASGISDKAIGVMTGALTEEDNR--MLMLSQPTRPSGYFYDSHHSQAKTPDNPKGIWTAI 225 Query: 252 QIDTRTVEGIDSGFH-EGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310 +++ + F + ++ G DS +++LGQFP++ + + + A R+ Sbjct: 226 VLNSEESPFVTPQFIKQKLLEYGGRDSIEYMVKVLGQFPREINGYLLGRDECDRAARRKV 285 Query: 311 IDDLYAPLIMGCDIAGEGGDKTV--VVFRRGNI 341 + + + D+ G G DK+V + G+ Sbjct: 286 LLEKNWGWVATADV-GNGRDKSVLNICKVSGHR 317 >gi|134287454|ref|YP_001109621.1| hypothetical protein Bcep1808_7700 [Burkholderia vietnamiensis G4] gi|134131876|gb|ABO60570.1| hypothetical protein Bcep1808_7700 [Burkholderia vietnamiensis G4] Length = 509 Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats. Identities = 51/300 (17%), Positives = 110/300 (36%), Gaps = 22/300 (7%) Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 ++A H ++ + + ++S+G G GKT+ A + LW + + I A + Sbjct: 34 LKAPTHHQIQMFDSVSKQGSRTSVSSGHGTGKTSGFAIIALWHLLCYYLSNTILTAPKIS 93 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA-ELLEQSMGIDSKHYTITCRTYS 177 + + +W E + + + + ++ E + ++ + ++ Sbjct: 94 TVSDGVWKEFADLSTKISNGPQ-------SWIWEYFVIESERVYVRGYKLNWFVIAKSAP 146 Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 P+ G H + DEASG PD I G T+ + S R +G+F Sbjct: 147 RGSPENLAGAHRDW-LLWLADEASGIPDDNFGVITGSLTDERNR--MCLASQPTRSSGFF 203 Query: 238 YDIFNIPL----EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293 Y+ + W ++ + + F +Y + +I++ G+FP+ Sbjct: 204 YETHHALSRAEGGPWNNLVFNSEFSPIVSAKFIAEKKLQYTEEE--YQIKVQGRFPENSS 261 Query: 294 NNFIPHNYIEEAMSREA-IDDLYAPLIMGCDIAGEG-GDKTVVVFRRGNIIEHIFDWSAK 351 + IE + R D + ++ D+ G G D+TV+ + ++ Sbjct: 262 KYLVGPQAIEACVGRTVIKPDEHWGWLLPVDVGGGGWRDETVM---PALHVIGRGEYGMD 318 >gi|262316909|emb|CBA18135.1| putative terminase B [Paenibacillus phage phiBP] Length = 248 Score = 165 bits (418), Expect = 8e-39, Method: Composition-based stats. Identities = 58/239 (24%), Positives = 100/239 (41%), Gaps = 30/239 (12%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P +WQ + + + ++ +G+G+GKT L A + LW + P + Sbjct: 39 PDKWQESVSDDIAKY------------RFVSVRSGQGVGKTALEAAISLWFLCCFPFPRV 86 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLP-HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 +C A + QL + LWAE+SKW S P + + ++ + + Sbjct: 87 VCTAPTRQQLNDVLWAEISKWQSQSPILKRILKWTKTKIYMKNYEER------------W 134 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 T RT ++ P+ G H M DEASG D I +I G + F N Sbjct: 135 FATARTATK--PENMQGFH-EDYMLFIVDEASGVDDRIMAAIFGTLSGDYNKLFMC--GN 189 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 + +G+F+D N ++ +++ E + ++YG SDV R+ +LG+F Sbjct: 190 PTKTSGFFFDSHNRDRAIYRTHRVSCLDSPRTSKENIEMLKAKYGEGSDVWRVRVLGEF 248 >gi|323948959|gb|EGB44853.1| terminase B protein [Escherichia coli H252] Length = 502 Score = 165 bits (417), Expect = 9e-39, Method: Composition-based stats. Identities = 58/273 (21%), Positives = 115/273 (42%), Gaps = 21/273 (7%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + +++G G GK++L A ++L + P +I +AN Q+K ++ V ++ + R Sbjct: 56 RTTVTSGHGTGKSSLTAMLLLIFMILFPDARVIIVANKIGQVKTGVFKYVKQYWANAVKR 115 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 H + L + +Y + + + C+ Y + G H H + + D Sbjct: 116 HGWLQTYFVLSDTMFYERSRK-------GIWEVLCKGYRLGNEEALAGEHAAH-LLLILD 167 Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-------IPLEDWKRY 251 EASG D + G TE + +M S R +G+FYD + P W Sbjct: 168 EASGISDKAIGVMTGALTEEDNR--MLMLSQPTRPSGYFYDSHHSRAKTPDNPKGIWTAI 225 Query: 252 QIDTRTVEGIDSGFHEG-IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310 +++ + F + ++ G DS +++LGQFP++ + + + + R+ Sbjct: 226 VLNSEESPFVTPQFIKEKLLEYGGRDSIEYMVKVLGQFPREINGYLLGRDECDRSARRKV 285 Query: 311 IDDLYAPLIMGCDIAGEGGDKTV--VVFRRGNI 341 + + + D+ G G DK+V + G+ Sbjct: 286 LLEKNWGWVATADV-GNGRDKSVLNICKVSGHR 317 >gi|269119479|ref|YP_003307656.1| hypothetical protein Sterm_0853 [Sebaldella termitidis ATCC 33386] gi|268613357|gb|ACZ07725.1| hypothetical protein Sterm_0853 [Sebaldella termitidis ATCC 33386] Length = 499 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 57/313 (18%), Positives = 111/313 (35%), Gaps = 40/313 (12%) Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 + V + + ++ AG GK++L + + + TRP +I A + QLK WA Sbjct: 35 QTRVLQAFNEYRRLSVPAGHSTGKSSLAGGLTTYWLITRPKSRVIVTAPTYRQLKTIYWA 94 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE--------------------------- 159 EV+K + + + +L Sbjct: 95 EVNKIYNRSKLKQLNLFEINDKIMRINDKDLKREWFALPVTASTPEGMQGQHGDKTEVIE 154 Query: 160 -------QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212 D + I + E+ + + + V DE+SG + I + + Sbjct: 155 QIMKHLGIEEIGDDETIEIVSQILRGEKQIEGLTKEDKEKLLVMVDESSGVKNEIFEVLE 214 Query: 213 GFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISR 272 G T+ + ++ N + G+FY+ P + + + + + + Sbjct: 215 G--TDYDK---LVLFGNMTKNTGYFYESVYNPKSKFYKVTMSSYNSPFMKKEQIHDLEET 269 Query: 273 YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA-GEGGDK 331 YG DS+V R+ + G+ P N+ N I+ A R Y + +G D+ G GGD Sbjct: 270 YGPDSNVVRVRLKGEAPDGNENSIFSSNKIDSAFQRSLSLSEYETIKLGVDVGKGSGGDS 329 Query: 332 TVVVFRRGNIIEH 344 + + ++ N + Sbjct: 330 STIYEKKDNRVRK 342 >gi|260871239|ref|YP_003238019.1| DNA packaging protein [Escherichia coli O111:H- str. 11128] gi|257767818|dbj|BAI39311.1| DNA packaging protein [Escherichia coli O111:H- str. 11128] Length = 494 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 60/328 (18%), Positives = 119/328 (36%), Gaps = 36/328 (10%) Query: 20 MHAECVLSFKN---FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPT 76 M CV + + + W L + WQ + + + + Sbjct: 1 MARSCVTDPRWRELVALYRYDWIAAADVLFGKTP--TWQQD---EIIESTQQDGSW---- 51 Query: 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136 ++++G G GK+ + + + + I PG +I +AN Q+ + ++ + Sbjct: 52 ---TSVTSGHGTGKSDMTSIIAILFIMFFPGARVILVANKRQQVLDGIFKYIK------- 101 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMG-IDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 +W S S ++ +TI ++ + G H H + Sbjct: 102 -SNWATAVSRFPWLSKYFILTETSFFEVTGKGVWTILIKSCRSGNEEALAGEHADH-LLY 159 Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-------IPLEDW 248 DEASG D I G T + + S R +G+FYD + P + Sbjct: 160 IIDEASGVSDKAFSVITGALTGKDNRIL--LLSQPTRPSGYFYDSHHRLAIRPGNPDGLF 217 Query: 249 KRYQIDTRTVEGIDSGFHE-GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307 +++ +D+ F + G D+ + I++ G+FP+ + + + +E A Sbjct: 218 TAIILNSEESPLVDAKFIRAKLAEYGGRDNPMYMIKVRGEFPKSQDGFLLGRDEVERATR 277 Query: 308 REAIDDLYAPLIMGCDIA-GEGGDKTVV 334 R+ + D+A G G DK+V+ Sbjct: 278 RKVKIAKGWGWVACVDVAGGTGRDKSVI 305 >gi|46401730|ref|YP_006576.1| PacB [Enterobacteria phage P1] gi|301646767|ref|ZP_07246623.1| putative terminase B protein [Escherichia coli MS 146-1] gi|129547|sp|P27753|TERL_BPP1 RecName: Full=Large terminase protein; AltName: Full=DNA-packaging protein B; AltName: Full=PACase B protein; AltName: Full=Terminase B protein; AltName: Full=Terminase large subunit gi|68597607|sp|Q5XLR0|TERL_BPP7 RecName: Full=Large terminase protein; AltName: Full=DNA-packaging protein B; AltName: Full=PACase B protein; AltName: Full=Terminase B protein; AltName: Full=Terminase large subunit gi|33323612|gb|AAQ07582.1|AF503408_106 PacB [Enterobacteria phage P7] gi|215636|gb|AAA21724.1| pacB [Enterobacteria phage P1] gi|33338757|gb|AAQ14080.1| PacB [Enterobacteria phage P1] gi|33338866|gb|AAQ14188.1| PacB [Enterobacteria phage P1] gi|54112354|gb|AAV28854.1| PacB [Enterobacteria phage P7] gi|301075042|gb|EFK89848.1| putative terminase B protein [Escherichia coli MS 146-1] Length = 494 Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats. Identities = 60/328 (18%), Positives = 119/328 (36%), Gaps = 36/328 (10%) Query: 20 MHAECVLSFKN---FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPT 76 M CV + + + W L + WQ + + + + Sbjct: 1 MARSCVTDPRWRELVALYRYDWIAAADVLFGKTP--TWQQD---EIIESTQQDGSW---- 51 Query: 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136 ++++G G GK+ + + + + I PG +I +AN Q+ + ++ + Sbjct: 52 ---TSVTSGHGTGKSDMTSIIAILFIMFFPGARVILVANKRQQVLDGIFKYIK------- 101 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMG-IDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 +W S S ++ +TI ++ + G H H + Sbjct: 102 -SNWATAVSRFPWLSKYFILTETSFFEVTGKGVWTILIKSCRPGNEEALAGEHADH-LLY 159 Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-------IPLEDW 248 DEASG D I G T + + S R +G+FYD + P + Sbjct: 160 IIDEASGVSDKAFSVITGALTGKDNRIL--LLSQPTRPSGYFYDSHHRLAIRPGNPDGLF 217 Query: 249 KRYQIDTRTVEGIDSGFHE-GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307 +++ +D+ F + G D+ + I++ G+FP+ + + + +E A Sbjct: 218 TAIILNSEESPLVDAKFIRAKLAEYGGRDNPMYMIKVRGEFPKSQDGFLLGRDEVERATR 277 Query: 308 REAIDDLYAPLIMGCDIA-GEGGDKTVV 334 R+ + D+A G G DK+V+ Sbjct: 278 RKVKIAKGWGWVACVDVAGGTGRDKSVI 305 >gi|331649955|ref|ZP_08351031.1| terminase B protein (PACase B protein) (DNA packaging B protein) [Escherichia coli M605] gi|331041212|gb|EGI13366.1| terminase B protein (PACase B protein) (DNA packaging B protein) [Escherichia coli M605] Length = 494 Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats. Identities = 60/328 (18%), Positives = 119/328 (36%), Gaps = 36/328 (10%) Query: 20 MHAECVLSFKN---FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPT 76 M CV + + + W L + WQ + + + + Sbjct: 1 MARSCVTDPRWRELVALYRYDWIAAADVLFGKTP--TWQQD---EIIESTQQDGSW---- 51 Query: 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136 ++++G G GK+ + + + + I PG +I +AN Q+ + ++ + Sbjct: 52 ---TSVTSGHGTGKSDMTSIIAILFIMFFPGARVILVANKRQQVLDGIFKYIK------- 101 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMG-IDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 +W S S ++ +TI ++ + G H H + Sbjct: 102 -SNWATAVSRFPWLSKYFILTETSFFEVTGKGVWTILIKSCRPGNEEALAGEHADH-LLY 159 Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-------IPLEDW 248 DEASG D I G T + + S R +G+FYD + P + Sbjct: 160 IIDEASGVSDKAFSVITGALTGKDNRIL--LLSQPTRPSGYFYDSHHRLAIRPGNPDGLF 217 Query: 249 KRYQIDTRTVEGIDSGFHE-GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307 +++ +D+ F + G D+ + I++ G+FP+ + + + +E A Sbjct: 218 TAIILNSEESPLVDAKFIRAKLAEYGGRDNPMYMIKVRGEFPKSQDGFLLGRDEVERATR 277 Query: 308 REAIDDLYAPLIMGCDIA-GEGGDKTVV 334 R+ + D+A G G DK+V+ Sbjct: 278 RKVKIAKGWGWVACVDVAGGTGRDKSVI 305 >gi|307308936|ref|ZP_07588619.1| hypothetical protein SinmeBDRAFT_4503 [Sinorhizobium meliloti BL225C] gi|306900570|gb|EFN31183.1| hypothetical protein SinmeBDRAFT_4503 [Sinorhizobium meliloti BL225C] Length = 472 Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 64/276 (23%), Positives = 113/276 (40%), Gaps = 15/276 (5%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 + G GKT ++A + W + + + A SE+ +K+ +W E+ S + Sbjct: 50 ITVKGSSGWGKTFISAISLWWSLIVFDPVKVTIFAPSESTIKSGIWNELQVLYSNMA--- 106 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 L + + + R S++ G H+ + V DE Sbjct: 107 -------PLFRELFEVSATKIFRKSRGETCWAEYRLVSKDNIAAARGFHSKN-NIVIADE 158 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP--LEDWKRYQIDTRT 257 ASG D+I L P ++ SN + +G+F+ + P +DW + R Sbjct: 159 ASGIEDVIFTGALLNVLNDGPGAKVVLVSNPDKASGFFFKTWRDPELSKDWIKVHGSIRD 218 Query: 258 VEGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAM-SREAIDDLY 315 G E YG S + G+FP +V+ I +++EA+ +++AI + Sbjct: 219 KPNYTPGEEERFARLYGGVTSRDYLTLVEGEFPLSDVDGLISREFLDEAVTNKDAIPNPK 278 Query: 316 APLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 AP+I G D AG G DK+V+ R N++ +W+ Sbjct: 279 APIIWGLDPAGAGKDKSVLAIRHDNVLRGFEEWAGL 314 >gi|304399103|ref|ZP_07380971.1| DNA packaging protein [Pantoea sp. aB] gi|304353343|gb|EFM17722.1| DNA packaging protein [Pantoea sp. aB] Length = 503 Score = 162 bits (409), Expect = 7e-38, Method: Composition-based stats. Identities = 66/318 (20%), Positives = 120/318 (37%), Gaps = 33/318 (10%) Query: 32 VMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT 91 + + W + L P Q E M +V +++G G GK+ Sbjct: 21 IRYRYNWALAVVELFGMI-PTWQQEEIMNSVQETGSQ-----------TTVTSGHGTGKS 68 Query: 92 TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151 +L A M+L + P +I +AN Q+K ++ V + + RH + +L + Sbjct: 69 SLTAMMLLIYMIMYPDARVIIVANKIGQVKTGVFKYVKTYWANAARRHPWLQNYFTLTDT 128 Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211 +Y + + C+ Y + G H H + DEASG D + Sbjct: 129 MFYE-------KSRKGIWEVLCKGYRLGNEEALAGEHAAHI-LLILDEASGISDKAIAIM 180 Query: 212 LGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-------IPLEDWKRYQIDTRTVEGIDSG 264 G TE + +M S R +G+FYD + P W +++ + Sbjct: 181 RGALTEEDNR--MLMMSQPTRPSGYFYDSHHSLARHPDNPNGFWNAIVLNSEEAPHVTLK 238 Query: 265 FH-EGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323 F E ++ G DS +++LG+FP+ + + + A R+ + + D Sbjct: 239 FIREKLVEYGGRDSLEYMVKVLGRFPRNVSGYLLGRDECDRAARRKVYLEKGWGWVATAD 298 Query: 324 IAGEGGDKTV--VVFRRG 339 + G G DK++ + G Sbjct: 299 V-GNGRDKSILNICKVSG 315 >gi|332974843|gb|EGK11758.1| hypothetical protein HMPREF9373_1714 [Psychrobacter sp. 1501(2011)] Length = 520 Score = 162 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 54/293 (18%), Positives = 107/293 (36%), Gaps = 26/293 (8%) Query: 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 WQ E + + + ++++G G GK+ + LW + P ++ Sbjct: 42 WQQELL----------FKSIVVPGSRTSVASGHGTGKSRSAGIIALWHLLFYPESVMLFT 91 Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173 A QL+ +W E++ L L + + + + + + + Sbjct: 92 APQIGQLRTVVWKEINICLQRLRNNKALGWLADYV-----VVLAEKIYIKGFKDTWFVFA 146 Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233 +T + +P G H H M V+ DEA G D + + +G T N ++TS + Sbjct: 147 KTAPKHQPTNIAGQHGDHYM-VWADEACGIDDAVMEVAIGALTHENNRA--VLTSQPAKN 203 Query: 234 NGWFYDIFNIPLE----DWKRYQIDTRTVEGIDSG-FHEGIISRYGLDSDVARIEILGQF 288 G+FYD + W + + + E + +S I I G+F Sbjct: 204 TGFFYDTHHKLSHYNGGKWIALEFNGEMSPIVSKEKLIEALYQYGSRNSPGYLIRIRGKF 263 Query: 289 PQQEVNNFIPHNYIE--EAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVFRR 338 P+ + + E +A + +I+ D+ G+ G D +V+ + Sbjct: 264 PELKGEYLLTRTDYENMKAHPCVIKEGDKWGIIVTVDVGGDVGRDSSVISVLQ 316 >gi|148653111|ref|YP_001280204.1| hypothetical protein PsycPRwf_1309 [Psychrobacter sp. PRwf-1] gi|148572195|gb|ABQ94254.1| hypothetical protein PsycPRwf_1309 [Psychrobacter sp. PRwf-1] Length = 520 Score = 162 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 53/293 (18%), Positives = 106/293 (36%), Gaps = 26/293 (8%) Query: 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 WQ E + + + ++++G G GK+ + LW + P ++ Sbjct: 42 WQQELL----------FKSIVVPGSRTSVASGHGTGKSRSAGIIALWHLLFYPESVMLFT 91 Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173 A QL+ +W E++ L L + + + + + + + Sbjct: 92 APQIGQLRTVVWKEINICLQRLRNNKALGWLADYV-----VVLAEKIYIKGFKDTWFVFA 146 Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233 +T + +P G H H M V+ DEA G D + + +G T N ++TS + Sbjct: 147 KTAPKHQPTNIAGQHGDHYM-VWADEACGIDDAVMEVAIGALTHENNRA--VLTSQPAKN 203 Query: 234 NGWFYDIFNIPLED----WKRYQIDTRTVEGIDSG-FHEGIISRYGLDSDVARIEILGQF 288 G+FYD + W + + + E + +S I I G+F Sbjct: 204 TGFFYDTHHKLSHHNGGKWTALEFNGEMSPIVSKDKLIEALYQYGSRNSPGYLIRIRGKF 263 Query: 289 PQQEVNNFIPHNYIEEAMSREAIDDLYAPL--IMGCDIAGE-GGDKTVVVFRR 338 P+ + + E + + + I+ D+ G+ G D +V+ + Sbjct: 264 PELKGEYLLTRTDYENMKQQPCVIEEGDKWGIIVAVDVGGDVGRDSSVISVMQ 316 >gi|161789175|ref|YP_001595730.1| PacB [Vibrio sp. 0908] gi|161761461|gb|ABX77106.1| PacB [Vibrio sp. 0908] Length = 572 Score = 157 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 61/286 (21%), Positives = 107/286 (37%), Gaps = 25/286 (8%) Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK-WLS 133 P + ++++G G GK+ L A + L I T P + ANS Q+ N +++ + + W+ Sbjct: 58 PVGARVSVASGHGTGKSHLTAALCLHFIITHPESLCMLTANSLDQVTNVVFSYIKRCWVK 117 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + + W E + + I +T S+ + G H M Sbjct: 118 ICQRQPWLE--------QYFVITAKSFYAKGYKGVWQIFGKTCSKGNEEGLAGQHRRDYM 169 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED--WKRY 251 V DEASG D + + G TE N ++ S R G F D E + Sbjct: 170 -VVVDEASGVSDRAFEVLRGALTEDNNK--MLLISQFTRPTGHFADSQMELAEQGLYTAI 226 Query: 252 QIDTRTVEGIDSGFH-EGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310 +++ ++ F E I G+ S I +LG P I + +++ Sbjct: 227 TLNSEMSPFVNLKFIREKRIEYGGVTSPEYGIRVLGVCPDDASGFLISRSLVDKGFEAVI 286 Query: 311 IDDLYAPLIMGCDIA-GEGGDKTVVVF---------RRGNIIEHIF 346 + D+A GEG D +V+ R+ +++ I Sbjct: 287 EFADEWGWVAVADVAGGEGRDSSVLKIGKVCGFGSERQVEVVKAIE 332 >gi|256392042|ref|YP_003113606.1| hypothetical protein Caci_2856 [Catenulispora acidiphila DSM 44928] gi|256358268|gb|ACU71765.1| conserved hypothetical protein [Catenulispora acidiphila DSM 44928] Length = 484 Score = 155 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 56/312 (17%), Positives = 104/312 (33%), Gaps = 37/312 (11%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 + + P RW + + ++ S A+ + G GK+ + + + W + T P Sbjct: 24 YLADPARWVDDKLGEYLWSRQVDIATSVRDQRLTAVQSCHGTGKSFVASRLTAWWLDTHP 83 Query: 107 GMS--IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 ++ A + Q+K LWAE++K + R + + E Sbjct: 84 PGEAFVVTTAPTGDQVKAILWAEINKAFAKAEARG-----------TPLPGRINETDWKY 132 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224 D K R S+ P F G H + + V DEA G + L T ++ Sbjct: 133 D-KFLVAFGRKPSDYNPHAFQGIHAKY-VLVILDEACGISKQFWTAALAIATGVHCRIL- 189 Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG--------------FHEGII 270 N F + + W +I R + + Sbjct: 190 -AIGNPDDPGSHFAQVC--KSDRWNMIKIAARDTPNFTGEEVPDDLADMLVSQAYVLDMA 246 Query: 271 SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA---PLIMGCDIAGE 327 +G +S + ++ +FP + + + + P+ +G D+ G Sbjct: 247 EEFGPESPIYLSKVDAEFPSDASDGVVRLSKLMACTREPVHPYAPDRLVPVELGVDL-GA 305 Query: 328 GGDKTVVVFRRG 339 GGD+T + RRG Sbjct: 306 GGDETCIRERRG 317 >gi|292670767|ref|ZP_06604193.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] gi|292647388|gb|EFF65360.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] Length = 442 Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats. Identities = 48/289 (16%), Positives = 92/289 (31%), Gaps = 28/289 (9%) Query: 79 KCAISAG-RGIGKTTLNAWMMLWLISTRPGM--SIICIANSETQLKNTLWAEVSKWLSML 135 + A+ R GKT M+ +A Q K W + + + + Sbjct: 26 RFAVLVCHRRFGKTVGTVNEMIRKAILNDKKAPVYAYVAPYRNQAKRVAWEYLKYYTNPI 85 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 P R E + + ++H D + V Sbjct: 86 PGR---------------VVNESELYIELPTRHARSPGARLYIIGADHPDALRGIYLDGV 130 Query: 196 FNDEASGTPDIINK-SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE--DWKRYQ 252 DE + + I + W + T + FY+++ + W Sbjct: 131 ILDEYADIKPELWGGVIRPALADRQG---WAVFIGTPKGQNQFYEMYQHAEKSAGWYSCI 187 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 T + + + + ++ R E+L F + IP + + A +R D Sbjct: 188 YRTDETGVLPAEELKDMQAQMTE--MEIRQELLCDFTASASDVVIPIDLVTAAANRLLKD 245 Query: 313 DL--YAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359 D P+I+G D+A G D+TV+ R+G ++ + ++ ET Sbjct: 246 DDVLGQPVILGVDVARFGDDRTVLCVRQGLWLKEVRTFTGLSTMETASR 294 >gi|216906085|ref|YP_002333619.1| terminase [Abalone shriveling syndrome-associated virus] gi|216263178|gb|ACJ72002.1| terminase [Abalone shriveling syndrome-associated virus] Length = 507 Score = 152 bits (383), Expect = 8e-35, Method: Composition-based stats. Identities = 62/308 (20%), Positives = 114/308 (37%), Gaps = 21/308 (6%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQLE ++ + N + + + A+S G G GKT L+ + +W PG Sbjct: 50 DWQLEIVDYIAKFFRKNSDEKH-FVCAIAVSGGNGTGKTKLSKALNIWRFCCHPGSRQFI 108 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 + NSE Q K T + + + +S L + + +Y+ + + + Sbjct: 109 LTNSERQTKRTGFTMLVRRISKL-----LSCIAALESSAYYYSPAVADKPEVRTNDMWDV 163 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR- 231 G H+ M DE++ D + +++ +T+ T N Sbjct: 164 TYLLQSSTEAALSGLHHP-MMTFSFDESTYFNDHVWQALENMWTQG--QVLCFCTGNPSH 220 Query: 232 RLNGWFYDIF----NIPLEDWKRYQIDTRTVE--GIDSGFHEGIISRYGLDSDVARIEIL 285 N +F +F + W + + + I YG +L Sbjct: 221 DNNNYFARLFNKSLHKKDSLWLTRCVSLLELPLKYRNDARARYIEEHYGKTHPRYIASVL 280 Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDD-LYAPLIMGCDI---AGEGGDKTVVVFRRGNI 341 GQFP++ N I EAM RE ++ ++ P+IMG D+ A G + + R G Sbjct: 281 GQFPKKNTCNPFDITAISEAMEREVREEFIHHPVIMGIDVSISANNGS-ASAICVREGTA 339 Query: 342 IEHIFDWS 349 + + ++ Sbjct: 340 VRVLREYR 347 >gi|255929035|ref|YP_003097347.1| DNA terminase packaging enzyme large subunit [Synechococcus phage S-RSM4] gi|255705321|emb|CAR63310.1| DNA terminase packaging enzyme large subunit [Synechococcus phage S-RSM4] Length = 550 Score = 152 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 51/374 (13%), Positives = 104/374 (27%), Gaps = 64/374 (17%) Query: 9 QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68 Q ++++ E + +C F M + + L F +Q E + Sbjct: 22 QFTKKQIDEWI---KCKNDPIYFAMNYIQIISLDEGLVPFKMYD-FQKEILRD------- 70 Query: 69 NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128 + F A R GK+T +L+ ++I +AN + + L Sbjct: 71 ----FHENRFNIA-KLPRQTGKSTTVVAYLLYYAIFYDSVNIGILANKASTARELLGRL- 124 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188 ++L + ++ +++ + T + Sbjct: 125 -----------QLAYENLPKWMQHGILVWNKGNVELENGSKILAAST-------SASAVR 166 Query: 189 NTHGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244 +F DE + P + S+ T ++ +T FY ++ Sbjct: 167 GMSFNILFLDEFAFVPNHVAEQFFASVYPTITSG--KSTKVIIISTPNGMNHFYKMWEDA 224 Query: 245 L---EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301 D+ ++ V G D+ + E I E F P Sbjct: 225 RRGKNDYVTNEVHWSQVPGRDAKWKEETIKNTS--PRQFAQEFECDFLGSADTLISPAKL 282 Query: 302 --------IEEAMSREAID--DLYAPLIMGCDIAGE-GGDKTVVVFRRGNIIEHIFDWSA 350 I+ + + I+ D+A GGD + + I Sbjct: 283 QNIPFHDPIQSNAGLDVYERVQKDHEYIITVDVARGIGGDYSAFIVFD------ITTMPY 336 Query: 351 KLIQETNQEGC-PV 363 K++ + PV Sbjct: 337 KIVAKYRNNEIKPV 350 >gi|326781864|ref|YP_004322266.1| terminase DNA packaging enzyme large subunit [Synechococcus phage S-SM2] gi|310003054|gb|ADO97452.1| terminase DNA packaging enzyme large subunit [Synechococcus phage S-SM2] Length = 549 Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 54/369 (14%), Positives = 109/369 (29%), Gaps = 63/369 (17%) Query: 11 LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70 E+++ E L +C F + + L F P+ +Q + + Sbjct: 22 TEEQVIEFL---KCKEDPVYFANNYIKIVSLDEGLTQF-HPYHFQEKLI----------- 66 Query: 71 NNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK 130 NN + F R GK+T +L ++I +AN + L Sbjct: 67 NNFHNNRFNIC-KMPRQTGKSTTVVSYLLHYAVFNDSVNIGILANKAATARELLGRL--- 122 Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190 ++L + S+ +++ + T + Sbjct: 123 ---------QTAYENLPRWMQQGIIAWNKGSLELENGSKILAAST-------SASAVRGM 166 Query: 191 HGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246 +F DE + P D S+ T + ++ +T FY +++ + Sbjct: 167 SFNILFLDEFAFVPNHVADSFFASVYPTITSGKNTK--VIIVSTPHGMNHFYRMWHDAEK 224 Query: 247 DWKRYQID---TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY-- 301 Y V G D + E I+ ++E +F P Sbjct: 225 RKNEYIPTDVHWSEVPGRDDKWKETTIANTSEQQ--FKVEFECEFLGSVDTLIAPSKLRT 282 Query: 302 --IEEAMSREAIDDLYAP------LIMGCDIAGE-GGDKTVVVFRRGNIIEHIFDWSAKL 352 + + R A D+Y P +M D+A G D + + I ++ ++ Sbjct: 283 LIYDNPIQRNAGLDVYEPPKDKHDYVMTVDVARGVGEDYSAF------VCVDITEFPHRI 336 Query: 353 IQETNQEGC 361 + + Sbjct: 337 VAKYRNNDI 345 >gi|61806000|ref|YP_214360.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage P-SSM2] gi|61374509|gb|AAX44506.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage P-SSM2] gi|265525210|gb|ACY76007.1| terminase large subunit gp17 [Prochlorococcus phage P-SSM2] Length = 547 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 49/376 (13%), Positives = 101/376 (26%), Gaps = 60/376 (15%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEA 61 P L + +E + +C F + + L F Sbjct: 9 PNLKKANTPIEFSKDNIREFLKCKEDPVYFTRNYIKIVSLDEGLVPF------------N 56 Query: 62 VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121 + + + F R GK+T +L +++ +AN + + Sbjct: 57 MYDFQEKLITRFHENRFNIC-KMPRQTGKSTTCISYLLHYAVFNDNVNVAVLANKASTAR 115 Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 + L ++L + S+ +++ T S Sbjct: 116 DLLGRL------------QLAYENLPRWMQQGIISWNKGSLELENGSKISANSTSS---- 159 Query: 182 DTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 +F DE + P D S+ T + ++ +T R F Sbjct: 160 ---SAVRGGSYNVIFLDEFAFIPNHIADDFFASVYPTITSGQSTK--VIIVSTPRGMNHF 214 Query: 238 YDIFNI---PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294 Y +++ ++ + V G D + E I+ +IE +F Sbjct: 215 YRMWHDSEKGKSEYVATDVHWSEVPGRDEEWKEQTIANTSEQQ--FKIEFECEFLGSVNT 272 Query: 295 NFIPHNY----IEEAMSREAI------DDLYAPLIMGCDIAGE-GGDKTVVVFRRGNIIE 343 P E +R A I+ D+A G D + + Sbjct: 273 LINPAKLRNLVYEAPKTRNAGLDIYETPVKEHNYIITVDVARGLGNDYSAFIVFD----- 327 Query: 344 HIFDWSAKLIQETNQE 359 ++ K++ + Sbjct: 328 -TTEFPYKVVAKYRNN 342 >gi|111222161|ref|YP_712955.1| hypothetical protein FRAAL2741 [Frankia alni ACN14a] gi|111149693|emb|CAJ61385.1| hypothetical protein FRAAL2741 [Frankia alni ACN14a] Length = 535 Score = 147 bits (369), Expect = 4e-33, Method: Composition-based stats. Identities = 63/326 (19%), Positives = 110/326 (33%), Gaps = 44/326 (13%) Query: 46 EHFSQPHRWQLEFMEAVDVHC-HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 + +P RW + + V + + N+ K A+ + GK+ + A + + T Sbjct: 51 FYRDEPVRWARDRLGGVHLWSKQQEIINALRVHRKVAVPSCHDAGKSFVAAAAVAHWLDT 110 Query: 105 RPGMS--IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162 P S I A + Q++ LW E+ + + + + + Sbjct: 111 HPPGSAFAITTAPTFPQVRAILWREIRRLSRL---------------MNPPLGRVNQTEW 155 Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222 ID R ++ F G H + V DEA G P + + T N Sbjct: 156 LIDD-DLVAFGRKPADHDEGGFQGIHAQYP-LVVLDEAGGIPQQLWIAADSIATNENARI 213 Query: 223 FWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG--------------FHEG 268 N +F + +P W I + E Sbjct: 214 L--AIGNPDDPTSYFAQVCELPS--WHVITIPAAETPAFTGEQIPDDLRQALLSRAWAEE 269 Query: 269 IISRYGLDSDVARIEILGQFPQQEVNNFI-PHNYIEEAMSREAIDDLYA--PLIMGCDIA 325 +G D+ V ++L QFP+ I + + + R+ P+ +G D+ Sbjct: 270 KRREWGEDNPVYISKVLAQFPKDVAWKVIKASDVAKRRIGRDEPWPASKLRPVCLGVDV- 328 Query: 326 GEGGDKTVVVFRRGNIIEHIFDWSAK 351 GEG D TVV RRG ++ +W A+ Sbjct: 329 GEGRDWTVVRERRG--VQAGREWQAR 352 >gi|326782863|ref|YP_004323261.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage P-RSM4] gi|310004122|gb|ADO98516.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage P-RSM4] Length = 547 Score = 146 bits (368), Expect = 5e-33, Method: Composition-based stats. Identities = 45/355 (12%), Positives = 97/355 (27%), Gaps = 54/355 (15%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEA 61 P L + ++ + E+ +C F+ + + L F Sbjct: 9 PNLKKVNTSIDFKPEEVAEVLKCQDDPIYFIKNYIKIVSLDEGLVPF------------N 56 Query: 62 VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121 + V+ + F A R GK+T+ +LW + +++ +AN + Sbjct: 57 MYHFQEEMVSKFHDHRFNIA-KLPRQSGKSTIVTAYLLWYVLFNANVNVAILANKAATAR 115 Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 L ++L + S+ +++ + T Sbjct: 116 EMLQRL------------QLSYENLPNWMQQGILQWNRGSLELENGSKIMAAST------ 157 Query: 182 DTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 + +F DE + P D S+ + ++ +T F Sbjct: 158 -SASAVRGMSFNVIFLDEFAFIPNHIADQFFSSVYPTISSG--KSTKVIIISTPHGMNMF 214 Query: 238 YDIFNIPL---EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294 Y +++ ++ ++ V G D + E I R+E +F Sbjct: 215 YKLWHDAERGTNEYVPTEVHWSEVPGRDDVWKEQTIKNTSESQ--FRVEFECEFLGSVDT 272 Query: 295 NFIPHNY--------IEEAMSREAIDD--LYAPLIMGCDIAGE-GGDKTVVVFRR 338 P I + I+ D++ G D + Sbjct: 273 LIAPSKLRIMPYHDPITSNRGLAVYEQVIPEHNYIITVDVSRGVGNDYSAFCVID 327 >gi|153806881|ref|ZP_01959549.1| hypothetical protein BACCAC_01156 [Bacteroides caccae ATCC 43185] gi|149131558|gb|EDM22764.1| hypothetical protein BACCAC_01156 [Bacteroides caccae ATCC 43185] Length = 513 Score = 146 bits (368), Expect = 5e-33, Method: Composition-based stats. Identities = 55/361 (15%), Positives = 115/361 (31%), Gaps = 67/361 (18%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP------ 106 ++ + + A + S A+++G GK + A L + P Sbjct: 24 KFVRDALCARLDREQQAIIESVQHNPMTAVASGTARGKDFVAACASLCFMYLTPRFNEKG 83 Query: 107 ----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162 + A + Q+KN + E+ + + + F L+ + Sbjct: 84 VLVGNTKVAMTAPTGRQVKNIMTPEIRRLIRAARTKFPFCC----------PGRLVADDI 133 Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222 D + + +T + +++ G H + M V EASG +I+ +I G + Sbjct: 134 RTDYEEWFLTGFKADDNATESWSGFHAANTMFVI-TEASGISEIVYNAIEGNLQGNSR-- 190 Query: 223 FWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI-----------DSGFHEG--- 268 ++ N G+ + + ++++ + E + D + + Sbjct: 191 -MLIVFNPNITTGYAARAM--KSDRFAKFRLSSLNAENVVKKQIVIPGQVDYEWVKDKVI 247 Query: 269 -------------------IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309 + +D+ R+++LG FP+ + IP+ +IE A Sbjct: 248 NWCSPIQQTDFNEGEGDFNWEGKLYRPNDLFRVKVLGMFPKVSEDVLIPYEWIEIANRNW 307 Query: 310 AIDD-----LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS---AKLIQETNQEGC 361 +G D+AG G D +V+ R GN + Sbjct: 308 QELQASGFIPAKSCKLGVDVAGMGRDNSVLCPRYGNYVPQFDVHQSAGRADHMHVVGMTI 367 Query: 362 P 362 P Sbjct: 368 P 368 >gi|261402679|ref|YP_003246903.1| protein of unknown function DUF264 [Methanocaldococcus vulcanius M7] gi|261369672|gb|ACX72421.1| protein of unknown function DUF264 [Methanocaldococcus vulcanius M7] Length = 437 Score = 145 bits (366), Expect = 8e-33, Method: Composition-based stats. Identities = 53/324 (16%), Positives = 103/324 (31%), Gaps = 50/324 (15%) Query: 23 ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82 + F+ FV G L H+ Q E ++A + + Sbjct: 12 KLRTDFEFFVKTV-----LGAEL------HKAQKEIVKAF----------FSGKYKTIIV 50 Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 +AGR GK+ L +++++L T+ IA + ++ E+ ++ + Sbjct: 51 AAGRRFGKSKLMCFLLIFLSCTQKDKKFAVIAPYYANAR-IIFKELRTYIEKNKT---LQ 106 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 + S + + ID + D V DEA+ Sbjct: 107 KLVKRITESPYMVIEFKTGCIIDFRS------------ADNPTSIRGESYHLVILDEAAF 154 Query: 203 TPDI-INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NIPLEDWKRYQIDTRTV 258 D + I + + I +T + FY+ F ++ T + Sbjct: 155 IKDDVVKYVIKPLLIDYDAPLIEI---STPNGHNHFYESFLMGENRQNRHISFRFPTWSN 211 Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID----DL 314 + E I +G DS V + E +F + + YI++ + + Sbjct: 212 PFLPKSVIEEIKREFGEDSLVWKQEFCAEFID-DQDAVFKWEYIQQCIDSNIELLTVGEK 270 Query: 315 YAPLIMGCDIAGEGGDKTVVVFRR 338 +MG D+A D TV++ Sbjct: 271 GHRYVMGVDLAKY-QDYTVIIILD 293 >gi|299769795|ref|YP_003731821.1| hypothetical protein AOLE_07785 [Acinetobacter sp. DR1] gi|298699883|gb|ADI90448.1| hypothetical protein AOLE_07785 [Acinetobacter sp. DR1] Length = 668 Score = 145 bits (366), Expect = 8e-33, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 90/259 (34%), Gaps = 18/259 (6%) Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 GKT + LW + ++ A QLK +W E+S L+ L Sbjct: 208 HNTGKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEISINLARLKQGPLA---- 263 Query: 146 LSLHPSGWY-AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + + + + + + +T + +P G H + M V+ DEASG Sbjct: 264 ---WLADYVGYQSELVYIKGYKEKWYVFAKTAPKHQPTNLAGNHGDNYM-VWVDEASGVD 319 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED----WKRYQIDTRTVEG 260 D + G T + TS R G FY+ + W + Sbjct: 320 DAVLDVAFGALTHEDNRAVM--TSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGEESPL 377 Query: 261 IDSGFHEGIISRYG-LDSDVARIEILGQFPQQEVNNFIPHNYIEEA-MSREAIDDLYAPL 318 + E +YG D +I +LG+FP I EE + DD Sbjct: 378 VSKQSLEEQRQKYGSRDDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDHQFGY 437 Query: 319 IMGCDIAGE-GGDKTVVVF 336 I+ D+ G G D +V+V Sbjct: 438 IITVDVGGGVGRDDSVIVI 456 >gi|323516996|gb|ADX91377.1| hypothetical protein ABTW07_0941 [Acinetobacter baumannii TCDC-AB0715] gi|323518424|gb|ADX92805.1| hypothetical protein ABTW07_2381 [Acinetobacter baumannii TCDC-AB0715] Length = 663 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 54/259 (20%), Positives = 90/259 (34%), Gaps = 18/259 (6%) Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 GKT + LW + ++ A QLK +W E+S L+ L Sbjct: 208 HNTGKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEISINLARLKQGPLA---- 263 Query: 146 LSLHPSGWY-AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + + + + + + +T + +P G H + M V+ DEASG Sbjct: 264 ---WLADYVGYQSELVYIKGYKEKWYVFAKTAPKHQPTNLAGNHGDNYM-VWVDEASGVD 319 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED----WKRYQIDTRTVEG 260 D + G T + TS R G FY+ + W + Sbjct: 320 DAVLDVAFGALTHEDNRAVM--TSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGEESPL 377 Query: 261 IDSGFHEGIISRYG-LDSDVARIEILGQFPQQEVNNFIPHNYIEEA-MSREAIDDLYAPL 318 + E +YG + +I +LG+FP I EE + DD Sbjct: 378 VSKQSLEEQRQKYGSREDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDHQFGY 437 Query: 319 IMGCDIAGE-GGDKTVVVF 336 ++ D+ G G D +V+V Sbjct: 438 VITVDVGGGVGRDDSVIVV 456 >gi|61806303|ref|YP_214662.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage P-SSM4] gi|61563847|gb|AAX46902.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage P-SSM4] Length = 550 Score = 145 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 42/371 (11%), Positives = 105/371 (28%), Gaps = 59/371 (15%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + + + Q ++++ E + A+ F+ ++ + + F Sbjct: 14 LKKANVSTQFTKKQVAEYMKCAQ---DPVYFIRKYIRIVSLDEGVIPFD----------- 59 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + V + F A R GK+T+ +LW + +++ +AN Sbjct: 60 -MYNFQEDMVTKFHQHRFNIA-KLPRQSGKSTIVTAYLLWYVLFNANVNVAILANKAPTA 117 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 + L ++L + S+ +++ + T Sbjct: 118 REMLGRL------------QLSYENLPKWMQQGILGWNKGSLELENGSKILASST----- 160 Query: 181 PDTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236 + +F DE + P + S+ + ++ +T Sbjct: 161 --SASAVRGMSFNIIFLDEFAFVPNHIAEQFFASVYPTISSG--KSTKVIIISTPHGMNQ 216 Query: 237 FYDIFNIP---LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293 FY +++ ++ ++ V G D + + I R+E +F Sbjct: 217 FYKLWHDAERGANNYVATEVHWSQVPGRDDKWKQQTIENTSE--AQFRVEFECEFLGSVD 274 Query: 294 NNFIPHNY--------IEEAMSREAIDD--LYAPLIMGCDIAGE-GGDKTVVVFRRGNII 342 P I+E + I+ D++ G D + + Sbjct: 275 TLITPSKLRIMPYKDPIQENRGLAVYEHVQENHNYIITVDVSRGVGNDYSAFCVIDTTTV 334 Query: 343 --EHIFDWSAK 351 + + + Sbjct: 335 PYKVVARYKNN 345 >gi|332852816|ref|ZP_08434408.1| intein splicing region-containing protein [Acinetobacter baumannii 6013150] gi|332871045|ref|ZP_08439658.1| intein splicing region-containing protein [Acinetobacter baumannii 6013113] gi|332729027|gb|EGJ60377.1| intein splicing region-containing protein [Acinetobacter baumannii 6013150] gi|332731805|gb|EGJ63085.1| intein splicing region-containing protein [Acinetobacter baumannii 6013113] Length = 663 Score = 145 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 53/259 (20%), Positives = 90/259 (34%), Gaps = 18/259 (6%) Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 GKT + LW + ++ A QLK +W E+S L+ L Sbjct: 208 HNTGKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEISINLARLKQGPLA---- 263 Query: 146 LSLHPSGWY-AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + + + + + + +T + +P G H + M V+ DEASG Sbjct: 264 ---WLADYVGYQSELVYIKGYKEKWYVFAKTAPKHQPTNLAGNHGDNYM-VWVDEASGVD 319 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED----WKRYQIDTRTVEG 260 D + G T + TS R G FY+ + W + Sbjct: 320 DAVLDVAFGALTHEDNRAVM--TSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGEESPL 377 Query: 261 IDSGFHEGIISRYG-LDSDVARIEILGQFPQQEVNNFIPHNYIEEA-MSREAIDDLYAPL 318 + + +YG + +I +LG+FP I EE + DD Sbjct: 378 VSEQSLQEQRQKYGSREDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDHQFGY 437 Query: 319 IMGCDIAGE-GGDKTVVVF 336 ++ D+ G G D +V+V Sbjct: 438 VITVDVGGGVGRDDSVIVV 456 >gi|260551382|ref|ZP_05825582.1| phage terminase [Acinetobacter sp. RUH2624] gi|260405545|gb|EEW99037.1| phage terminase [Acinetobacter sp. RUH2624] Length = 663 Score = 145 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 53/259 (20%), Positives = 90/259 (34%), Gaps = 18/259 (6%) Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 GKT + LW + ++ A QLK +W E+S L+ L Sbjct: 208 HNTGKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEISINLARLKQGPLA---- 263 Query: 146 LSLHPSGWY-AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + + + + + + +T + +P G H + M V+ DEASG Sbjct: 264 ---WLADYVGYQSELVYIKGYKEKWYVFAKTAPKHQPTNLAGNHGDNYM-VWVDEASGVD 319 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED----WKRYQIDTRTVEG 260 D + G T + TS R G FY+ + W + Sbjct: 320 DAVLDVAFGALTHEDNRAVM--TSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGEESPL 377 Query: 261 IDSGFHEGIISRYG-LDSDVARIEILGQFPQQEVNNFIPHNYIEEA-MSREAIDDLYAPL 318 + + +YG + +I +LG+FP I EE + DD Sbjct: 378 VSEQSLQEQRQKYGSREDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDHQFGY 437 Query: 319 IMGCDIAGE-GGDKTVVVF 336 ++ D+ G G D +V+V Sbjct: 438 VITVDVGGGVGRDDSVIVV 456 >gi|213156231|ref|YP_002318651.1| phage terminase [Acinetobacter baumannii AB0057] gi|301346399|ref|ZP_07227140.1| phage terminase [Acinetobacter baumannii AB056] gi|301594275|ref|ZP_07239283.1| phage terminase [Acinetobacter baumannii AB059] gi|213055391|gb|ACJ40293.1| phage terminase [Acinetobacter baumannii AB0057] Length = 663 Score = 145 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 53/259 (20%), Positives = 90/259 (34%), Gaps = 18/259 (6%) Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 GKT + LW + ++ A QLK +W E+S L+ L Sbjct: 208 HNTGKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEISINLARLKQGPLA---- 263 Query: 146 LSLHPSGWY-AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + + + + + + +T + +P G H + M V+ DEASG Sbjct: 264 ---WLADYVGYQSELVYIKGYKEKWYVFAKTAPKHQPTNLAGNHGDNYM-VWVDEASGVD 319 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED----WKRYQIDTRTVEG 260 D + G T + TS R G FY+ + W + Sbjct: 320 DAVLDVAFGALTHEDNRAVM--TSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGEESPL 377 Query: 261 IDSGFHEGIISRYG-LDSDVARIEILGQFPQQEVNNFIPHNYIEEA-MSREAIDDLYAPL 318 + + +YG + +I +LG+FP I EE + DD Sbjct: 378 VSEQSLQEQRQKYGSREDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDHQFGY 437 Query: 319 IMGCDIAGE-GGDKTVVVF 336 ++ D+ G G D +V+V Sbjct: 438 VITVDVGGGVGRDDSVIVV 456 >gi|184158505|ref|YP_001846844.1| hypothetical protein ACICU_02185 [Acinetobacter baumannii ACICU] gi|183210099|gb|ACC57497.1| hypothetical protein ACICU_02185 [Acinetobacter baumannii ACICU] Length = 663 Score = 145 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 53/259 (20%), Positives = 90/259 (34%), Gaps = 18/259 (6%) Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 GKT + LW + ++ A QLK +W E+S L+ L Sbjct: 208 HNTGKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEISINLARLKQGPLA---- 263 Query: 146 LSLHPSGWY-AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + + + + + + +T + +P G H + M V+ DEASG Sbjct: 264 ---WLADYVGYQSELVYIKGYKEKWYVFAKTAPKHQPTNLAGNHGDNYM-VWVDEASGVD 319 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED----WKRYQIDTRTVEG 260 D + G T + TS R G FY+ + W + Sbjct: 320 DAVLDVAFGALTHEDNRAVM--TSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGEESPL 377 Query: 261 IDSGFHEGIISRYG-LDSDVARIEILGQFPQQEVNNFIPHNYIEEA-MSREAIDDLYAPL 318 + + +YG + +I +LG+FP I EE + DD Sbjct: 378 VSEQSLQEQRQKYGSREDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDHQFGY 437 Query: 319 IMGCDIAGE-GGDKTVVVF 336 ++ D+ G G D +V+V Sbjct: 438 VITVDVGGGVGRDDSVIVV 456 >gi|326782611|ref|YP_004323017.1| terminase DNA packaging enzyme large subunit [Synechococcus phage S-SM1] gi|310002825|gb|ADO97224.1| terminase DNA packaging enzyme large subunit [Synechococcus phage S-SM1] Length = 549 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 43/356 (12%), Positives = 97/356 (27%), Gaps = 57/356 (16%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + + + E+ E++ +C F+ ++ K L F Sbjct: 13 LKKANTALDFTPDEVQEVI---KCSEDPVYFIKKYIKIVSLDKGLIPFD----------- 58 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + V + F A R GK+T+ +LW + +++ +AN Sbjct: 59 -MYHFQEEMVQKFHDNRFNIA-KLPRQSGKSTIVTSYLLWYVLFNDNVNVAILANKAATA 116 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 + L ++L + S+ +++ + T Sbjct: 117 REMLQRL------------QLSYENLPKWLQQGILQWNRGSLELENGSKIMAAST----- 159 Query: 181 PDTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236 + +F DE + P D S+ + ++ +T Sbjct: 160 --SASAVRGMSFNVIFLDEFAFIPNHIADQFFSSVYPTISSG--KSTKVIIISTPHGMNM 215 Query: 237 FYDIFNIPL---EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293 FY +++ ++ ++ V G D + E I R+E +F Sbjct: 216 FYKLWHDAERGTNEYIPTEVHWSEVPGRDDVWKEQTIKNTSEQQ--FRVEFECEFLGSVD 273 Query: 294 NNFIPHNYIEEAMSREAIDD----------LYAPLIMGCDIAGE-GGDKTVVVFRR 338 P ++ ++ D++ G D + Sbjct: 274 TLISPSKLRIMPYHDPMKENRGLAIFEQSIPDHNYVITVDVSRGVGNDYSAFCVMD 329 >gi|326782381|ref|YP_004322781.1| terminase DNA packaging enzyme large subunit [Synechococcus phage S-ShM2] gi|310003329|gb|ADO97726.1| terminase DNA packaging enzyme large subunit [Synechococcus phage S-ShM2] Length = 362 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 47/378 (12%), Positives = 103/378 (27%), Gaps = 60/378 (15%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEA 61 P L + +E ++ A+C F+ + L F Sbjct: 11 PNLKKANTSIEFTNDQISEFAKCYNDPVYFIKNYVKIVSLDAGLIPFD------------ 58 Query: 62 VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121 + V + F A R GK+T+ +LW + +++ +AN + Sbjct: 59 MYHFQEEMVQKFHDNRFNIA-KLPRQSGKSTIVTSYLLWYVIFNDNVNVAILANKAATSR 117 Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 L ++L + S+ +++ + T S Sbjct: 118 EMLQRLQR------------SYENLPKWLQQGIVQWNRGSLELENGSKIMAASTSS---- 161 Query: 182 DTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 +F DE + P D S+ + ++ +T F Sbjct: 162 ---SAVRGMSFNVIFLDEFAFVPNHIADEFFSSVYPTISSG--KSTKVIIISTPHGMNMF 216 Query: 238 YDIFN---IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294 Y +++ ++ ++ V G D+ + I+ ++E +F Sbjct: 217 YKLWHDSERKKNEYISTEVHWSEVPGRDAKWKAQTIANTSEQQ--FKVEFECEFLGSVDT 274 Query: 295 NFIPHNYI----------EEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVFRRGNIIE 343 P + +S ++ D+A GD + ++ Sbjct: 275 LISPSKLRTMVYNDPLVQNKGLSIYEHVQKDHNYVITVDVARGVSGDFSAF------VVI 328 Query: 344 HIFDWSAKLIQETNQEGC 361 KL+ + Sbjct: 329 DTTTIPYKLVAKYKNNTI 346 >gi|326784324|ref|YP_004324722.1| terminase DNA packaging enzyme large subunit [Synechococcus phage S-SSM5] gi|310003555|gb|ADO97951.1| terminase DNA packaging enzyme large subunit [Synechococcus phage S-SSM5] Length = 549 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 99/356 (27%), Gaps = 57/356 (16%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + + + E+ E+L +E F+ + K L F Sbjct: 13 LKKANTAIDFTPDEVAEVLRCSE---DPVYFIKNYIKIVSLDKGLIPFD----------- 58 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + V+ + F A R GK+T+ +LW + P +++ +AN Sbjct: 59 -MYHFQEEMVSKFHAERFNIA-KLPRQSGKSTIVTSYLLWYVLFNPNVNVAILANKAATA 116 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 + L ++L + S+ +++ + T Sbjct: 117 REMLQRL------------QLSYENLPKWLQQGILQWNRGSLELENGSKIMAAST----- 159 Query: 181 PDTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236 + +F DE + P D S+ + ++ +T Sbjct: 160 --SASAVRGMSFNVIFLDEFAFIPNHIADQFFSSVYPTISSG--KSTKVIIISTPHGMNM 215 Query: 237 FYDIFNIP---LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293 FY +++ ++ ++ V G D + E I R+E +F Sbjct: 216 FYKLWHDAERGSNEYVPTEVHWSEVPGRDEVWKEQTIKNTSEQQ--FRVEFECEFLGSVD 273 Query: 294 NNFIPHNY--------IEEAMSREAIDD--LYAPLIMGCDIAGE-GGDKTVVVFRR 338 P + + + I+ D++ G D + Sbjct: 274 TLISPSKLRIMPYHEPMNQNRGLAVFEQAIPEHNYILTVDVSRGVGNDYSAFTVMD 329 >gi|303243859|ref|ZP_07330199.1| protein of unknown function DUF264 [Methanothermococcus okinawensis IH1] gi|302485795|gb|EFL48719.1| protein of unknown function DUF264 [Methanothermococcus okinawensis IH1] Length = 445 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 51/291 (17%), Positives = 96/291 (32%), Gaps = 30/291 (10%) Query: 60 EAVDVHCHSNVNNSNPTIFK-CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 E + ++ +K ++AGR GK+ L A+++++L ST+ IA Sbjct: 33 EKLHSAQQKIIDAYISKKYKTIIVAAGRRFGKSKLMAFLLIFLCSTQKNKKYAVIAPFYA 92 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 + ++ E+ K++ + + S + A + ID + Sbjct: 93 NAR-IIFRELKKYIEK---SNVLSRLVKRMVESPYMAIEFKTGCTIDFRS---------- 138 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDI-INKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 D V DEA+ D + I + + I +T + F Sbjct: 139 --ADNPTSIRGESYHLVILDEAAFIKDDVVKYVIKPLLLDYDAPLIEI---STPNGHNHF 193 Query: 238 YDIF---NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294 Y+ F ++ T T + E I G DS V + E +F Sbjct: 194 YESFLMGKNKQNRHISFRFPTWTNPFLPKNAIEEIKQEVGEDSPVWKQEYCAEFIDNNE- 252 Query: 295 NFIPHNYIEEAMSREAID----DLYAPLIMGCDIAGEGGDKTVVVFRRGNI 341 YI++ + + +MG D+A D TV+ ++ Sbjct: 253 AVFNWEYIQQCIDGTIKLLKSGESGHQYVMGVDLAKF-EDYTVITVLDVSV 302 >gi|326783331|ref|YP_004323723.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage Syn33] gi|310005278|gb|ADO99667.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage Syn33] Length = 549 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 45/370 (12%), Positives = 105/370 (28%), Gaps = 56/370 (15%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEA 61 P L + E E+ + +C +F++ + + + F+ Sbjct: 11 PNLKKANIAQEFSPEEVQEYLKCADDPVHFILNYIKIVSLDEGVIPFT------------ 58 Query: 62 VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121 + V + + F A R GK+T+ +LW + P +++ +AN + Sbjct: 59 MYDFQVDMVKSFHDNRFNIA-KLPRQSGKSTIVTAYLLWYVLFNPNVNVAILANKAATAR 117 Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 L ++L + S+ +++ + T Sbjct: 118 EMLGRL------------QLSYENLPKWLQQGILQWNRGSLELENGSKILAAST------ 159 Query: 182 DTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 + +F DE + P D S+ + ++ +T F Sbjct: 160 -SASAVRGMSFNVIFLDEFAFVPNHIADQFFSSVYPTVSSG--KSTKVIIISTPHGMNMF 216 Query: 238 YDIFNIP---LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294 Y +++ ++ ++ V G D+ + E I ++E +F Sbjct: 217 YKLWHDAEQGKNEYLPTEVHWSQVPGRDAAWKEQTIKNTSEQQ--FKVEFECEFLGSVDT 274 Query: 295 NFIPHNYIEEAMSREA----------IDDLYAPLIMGCDIAGE-GGDKTVVVFRRGNII- 342 P + I+ D++ G D + V + Sbjct: 275 LISPSKLRTMPYVDPVAQNKGLAIYERVEAEHNYIITVDVSRGIGNDYSAFVVVDTTTMP 334 Query: 343 -EHIFDWSAK 351 + + + Sbjct: 335 YKVVARYRNN 344 >gi|189460514|ref|ZP_03009299.1| hypothetical protein BACCOP_01155 [Bacteroides coprocola DSM 17136] gi|189432758|gb|EDV01743.1| hypothetical protein BACCOP_01155 [Bacteroides coprocola DSM 17136] Length = 556 Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats. Identities = 60/362 (16%), Positives = 124/362 (34%), Gaps = 72/362 (19%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP------ 106 R+ E + + +S + ++++G GK + A + + P Sbjct: 54 RFVREALGVTLDKEQQEILSSVQYNRRTSVASGTARGKDFVAACAAICFLYLTPRWRKNS 113 Query: 107 --------GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 + A ++ Q+KN + E+S+ + R + L+ + Sbjct: 114 LGEIELVENTKVALTAPTDRQVKNIMMPEISRLFNRAKARGVELIGKLNAY--------- 164 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218 + ++ + +T E + + G H H M EA+G D +I G Sbjct: 165 --DIRTNNDEWFLTGFKADEHNHEAWSGFHAVHTMF-VVTEATGIGDDTFAAIEGNLQGD 221 Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG-----------IDSGFHE 267 + ++ N + G+ + + W +Y++++ T +D + Sbjct: 222 SR---ILLVFNPNKTVGYAAK--SQKGDRWHKYRLNSLTAPNIASKKIIIPGQVDYDWVL 276 Query: 268 GIIS----------------------RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA 305 + ++ D+ R ++LG FP+ + + IP ++EEA Sbjct: 277 DKLENWCEKISPDEIISEMDDFEFEGQWYRPEDLFRKKVLGLFPKVDEDTLIPRQWLEEA 336 Query: 306 MSREAIDDLYAPL-----IMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA---KLIQETN 357 R PL I+G D+AG G D T V RR N + ++ + Sbjct: 337 HERWKQAKGREPLRADLNILGVDVAGMGRDATCYVLRRDNWVASFDTHNSGGVADHMKVA 396 Query: 358 QE 359 + Sbjct: 397 GK 398 >gi|284162607|ref|YP_003401230.1| hypothetical protein Arcpr_1511 [Archaeoglobus profundus DSM 5631] gi|284012604|gb|ADB58557.1| protein of unknown function DUF264 [Archaeoglobus profundus DSM 5631] Length = 435 Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats. Identities = 62/355 (17%), Positives = 116/355 (32%), Gaps = 68/355 (19%) Query: 10 KLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSN 69 K ++EL + ++ F F WG H Q + + Sbjct: 2 KTDKELKKKVLS-----DPVTFAKVFLDWGA-----------HPAQAQILRDRHQF---- 41 Query: 70 VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129 + AGR GKT A ++ T PG IA S Q N ++ ++ Sbjct: 42 ----------ITVVAGRRFGKTECMAVSAIYYALTNPGSIQFVIAPSYDQ-SNIMFGQIV 90 Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189 ++LS ++ + ++ + + I ++ Sbjct: 91 QFLSKSILGCMIR----RIYKTPFHHIIFKNDSVIHARS------------ASKPEFLRG 134 Query: 190 THGMAVFNDEASGTPDIIN-KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-- 246 + DEA+ PD + I + N + WI FYD + Sbjct: 135 HKAHRIILDEAAFIPDDVISNIIEPMLADYNGS--WIKIGTP-FGKNHFYDTYLKGQSPD 191 Query: 247 --DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE 304 D+ Y+ + I F E YG +S + R E L +F + + N I++ Sbjct: 192 FPDYSSYRFPSTVNPHISHEFIEKKKREYGENSIIFRTEYLAEFVE-DQNAVFRWADIQK 250 Query: 305 AMSREAI-----DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354 + +++ ++GCD+A D TV+ ++ + + KL+ Sbjct: 251 NVDNSIELIDSAENVSKQYVIGCDLAKY-QDYTVI------VVLDVTEKPYKLVH 298 >gi|326784094|ref|YP_004324487.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage Syn1] gi|310004826|gb|ADO99217.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage Syn1] Length = 550 Score = 142 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 43/367 (11%), Positives = 103/367 (28%), Gaps = 63/367 (17%) Query: 11 LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70 +++ E + +C F + + L F + + Sbjct: 23 TPEQVKEFI---KCKNDPIYFTKTYVQIVSLDEGLVPFK------------MWDFQEELI 67 Query: 71 NNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK 130 + + F A R GK+T +L + +++ +AN + ++ L + Sbjct: 68 RKFHKSRFNIA-KLPRQTGKSTTVVSYLLHYLIFNDSVNVGILANKASTARDLLARLAT- 125 Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190 ++L + ++ +++ + T + Sbjct: 126 -----------AYENLPKWIQQGVVVWNKGNIELENGSKILAAST-------SASAVRGM 167 Query: 191 HGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP-- 244 +F DE + P D S+ T ++ +T + FY ++ Sbjct: 168 SFNIIFLDEFAFVPNHIADSFFASVYPTITSG--KSTKVIIISTPQGMNHFYKMWQDAVN 225 Query: 245 -LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY-- 301 D+ +++ V G D+ + E I E +F Sbjct: 226 GRNDYTYHEVHWSQVPGRDAKWKEETIKNTS--QRQFTQEFECEFLGSVDTLISASKLKA 283 Query: 302 --IEEAMSRE------AIDDLYAPLIMGCDIAGE-GGDKTVVVFRRGNIIEHIFDWSAKL 352 +E ++R ++ D++ GGD + + I K+ Sbjct: 284 LAFDEPITRNKGLDIYEKPKDKNEYLLTVDVSRGIGGDYSAFIVYD------ITTVPYKI 337 Query: 353 IQETNQE 359 + + Sbjct: 338 VGKYRNN 344 >gi|326783550|ref|YP_004323947.1| terminase DNA packaging enzyme large subunit [Synechococcus phage Syn19] gi|310005053|gb|ADO99443.1| terminase DNA packaging enzyme large subunit [Synechococcus phage Syn19] Length = 549 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 43/349 (12%), Positives = 93/349 (26%), Gaps = 56/349 (16%) Query: 23 ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82 +C F+ + K L F + V + F A Sbjct: 32 KCSEDPVYFIKTYIKIVSLDKGLIPFD------------MYHFQEEMVEKFHDNRFNIA- 78 Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 R GK+T+ +LW + +++ +AN + L Sbjct: 79 KLPRQSGKSTIVTSYLLWYVLFNQNVNVAILANKAATSREMLQRL------------QLS 126 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 ++L + S+ +++ + T S +F DE + Sbjct: 127 YENLPKWLQQGILQWNRGSLELENGSKIMAASTSS-------SAVRGMSFNVIFLDEFAF 179 Query: 203 TP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP---LEDWKRYQIDT 255 P D S+ + + ++ +T FY +++ ++ ++ Sbjct: 180 VPNHIADQFFSSVYPTISSGQSTK--VIIISTPHGMNMFYKLWHDAERSKNEYIPTEVHW 237 Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--- 312 V G D+ + E I+ ++E +F P Sbjct: 238 SEVPGRDAKWKEQTIANTSEQQ--FKVEFECEFLGSVDTLISPSKLRVMPYHDPIAQNKG 295 Query: 313 -------DLYAPLIMGCDIAG-EGGDKTVVVFRRGNII--EHIFDWSAK 351 + I+ D+A D + + E + + Sbjct: 296 LAVYKRAEPDHNYIITVDVARGTSNDYSAFCVMDTTTVPYEMVARYRNN 344 >gi|58532911|ref|YP_195134.1| terminase DNA packaging enzyme large subunit [Synechococcus phage S-PM2] gi|58331378|emb|CAF34164.1| terminase DNA packaging enzyme large subunit [Synechococcus phage S-PM2] Length = 548 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 41/350 (11%), Positives = 98/350 (28%), Gaps = 58/350 (16%) Query: 23 ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82 +C F + + L F + + + F A Sbjct: 32 KCANDPVYFTKNYVKIVSLDEGLVPFK------------MWDFQEELIMKFHKNRFNIA- 78 Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 R GK+T +L + ++I +AN + ++ L + Sbjct: 79 KLPRQTGKSTTVVSYLLHYLIFNDNVNIGILANKASTARDLLARLAT------------A 126 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 ++L + ++ +++ + T + +F DE + Sbjct: 127 YENLPKWIQQGVVVWNKGNIELENGSKILAAST-------SASAVRGMSFNIIFLDEFAF 179 Query: 203 TP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NIPLEDWKRYQIDT 255 P D S+ T ++ +T + FY ++ + +++ Sbjct: 180 VPNHIADSFFASVYPTITSG--KSTKVIIISTPQGMNHFYKMWVDATNGRNGYTFHEVHW 237 Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA----- 310 V G D + E I E +F V+ I + ++ + + Sbjct: 238 SQVPGRDEKWKEETIKNTSERQ--FTQEFECEFL-GSVDTLIAASKLKALVFNDPIKRNK 294 Query: 311 ------IDDLYAPLIMGCDIAGE-GGDKTVVVFRRGNII--EHIFDWSAK 351 + +M D++ GGD + + + + + + Sbjct: 295 GLDIYEEPKEKSEYLMTVDVSRGIGGDYSAFIIFDITTVPYKVVGKYRNN 344 >gi|298387330|ref|ZP_06996883.1| conserved hypothetical protein [Bacteroides sp. 1_1_14] gi|298259999|gb|EFI02870.1| conserved hypothetical protein [Bacteroides sp. 1_1_14] Length = 500 Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats. Identities = 61/339 (17%), Positives = 111/339 (32%), Gaps = 67/339 (19%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---------- 106 + + A V S A+++G GK + A L + P Sbjct: 22 DVLRANLDEEQKAVLRSVQKNPMTALASGTSRGKDFVAACAALCFMYLTPEWDDDGNLIR 81 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 I A S+ Q++N + EV + L+ + D Sbjct: 82 NTKIALSAPSQRQVENIMTPEVRRLFRNAG---------------ILPGRLVANDIRTDY 126 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226 + Y +T + + + G H + M V EASG + I +I G + Sbjct: 127 EEYFLTGFKADNKNQEVWSGFHAANVMFVI-TEASGVSETIFSAIEGNLQGNSRLLLVF- 184 Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI-----------DSGFHEGIISRY-- 273 N G Y + + + ++++D+ + + + E + + Sbjct: 185 --NPNITTG--YAANAMKSDRFAKFRLDSLNATNVTAKREIIPGQVNYEWVEDKVKHWCT 240 Query: 274 --------------------GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 +D+ RI++ G FP+ + IP+ +IE A R + Sbjct: 241 PITKEEYNEGEGDFLFENNLYRPNDLFRIKVRGMFPKVAEDVLIPYEWIEIANKRWQENH 300 Query: 314 LYAP---LIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS 349 Y P +G D+AG G D +V R GN + + Sbjct: 301 PYRPRKSCKLGVDVAGMGRDNSVFCPRYGNYVSQFDVFQ 339 >gi|291336011|gb|ADD95601.1| large terminase protein [uncultured phage MedDCM-OCT-S09-C7] Length = 526 Score = 139 bits (349), Expect = 8e-31, Method: Composition-based stats. Identities = 48/358 (13%), Positives = 108/358 (30%), Gaps = 54/358 (15%) Query: 9 QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68 + +QE+ E + +C +F+ + + + F +Q + +E Sbjct: 23 KYTDQEMQEYV---KCSQDPCHFIENYTQIISLDEGMVPFK-LRGYQDKLIE-------- 70 Query: 69 NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128 + N F + A R GK+ + +LW + P +++ +AN + + V Sbjct: 71 ---HYNSNRFNI-VLASRQSGKSITSCAYLLWFLLFNPEVTVAVLANKGAIAREMIARMV 126 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188 + ++S+ L + S+ + + T S Sbjct: 127 T------------MLESVPFFLQPGVKILNKGSIEFANDSKVVAAATSS-------SSIR 167 Query: 189 NTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247 ++ DE + D + + I+TS + FY I+ + D Sbjct: 168 GLSINLLYLDEFAFVDDAETFYTATYPVVTSGKDSKVIITSTANGVGNMFYKIYESAVHD 227 Query: 248 ---WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIP------ 298 +K + I+ V G D + + I+ E F Sbjct: 228 QSEYKHFLINWFDVPGRDEEWKKETIANTSE--AQFEQEYGNSFLGTGNTLINSNTLLGL 285 Query: 299 ----HNYIEEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVVFRRGNI--IEHIFDWS 349 ++ ++ + I D++ G G D + ++ + + Sbjct: 286 MSKEPDWNKDGVKVYEKPKEGHTYITTVDVSKGRGIDYSTFTIMDISVKPFRQVCTYR 343 >gi|319775727|ref|YP_004138215.1| phage terminase large subunit [Haemophilus influenzae F3047] gi|319896735|ref|YP_004134928.1| phage terminase large subunit [Haemophilus influenzae F3031] gi|317432237|emb|CBY80589.1| predicted phage terminase large subunit [Haemophilus influenzae F3031] gi|317450318|emb|CBY86534.1| predicted phage terminase large subunit [Haemophilus influenzae F3047] Length = 449 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 43/289 (14%), Positives = 99/289 (34%), Gaps = 24/289 (8%) Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 P +K GRG GK+ A +++ I+ R + + C + + +++ ++ + Sbjct: 15 PCRYKILY-GGRGSGKSWGVAQLLV-EIAVRTKVRVFCGRELQNSMSDSVIKLIADTIED 72 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 L + FE+Q +++ +E + + + Sbjct: 73 LGYLEDFEVQRNAIYCLKTGSEFMFYGIKNNPN-----------------KIKSLEGIDL 115 Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-PLEDWKRYQI 253 V+ +EA + ++ + + +T N + + Y F I P ++ +I Sbjct: 116 VWIEEAENVSNESWDILIPTIRKERSEIW--VTFNPKNILDPTYQRFVIAPPKNSFVRKI 173 Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 + + D ++ R LG+ I +IE A+ Sbjct: 174 NYDENPYFPETLRLEMEECKERDYELYRHIWLGEPVADSDKVIIKPVWIECAVDAHKKLG 233 Query: 314 --LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360 I+G D+A +G D F G+++ + +W + + + Sbjct: 234 FLPAGRKIVGFDVADDGVDSNANAFVHGSVVLRVDEWRGEDVIGSADRT 282 >gi|159897183|ref|YP_001543430.1| hypothetical protein Haur_0654 [Herpetosiphon aurantiacus ATCC 23779] gi|159890222|gb|ABX03302.1| conserved hypothetical protein [Herpetosiphon aurantiacus ATCC 23779] Length = 472 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 54/352 (15%), Positives = 98/352 (27%), Gaps = 63/352 (17%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSN-PTIFKCAISAGRGIGKTTLNAWMMLWLIS 103 L + P + E + V + S ++ + A +GKT L ++ W Sbjct: 2 LPYAHDPVAYAREVLGEVWWTKQELIARSLLTPPYRTLVKACHKVGKTHLGGGLVNWWYD 61 Query: 104 TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163 + ++ A ++ Q+++ LW EV + + Sbjct: 62 SFDPGLVLTTAPTDRQVRDLLWKEVRMQRRG----------------RAGFTGPKSPRLE 105 Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223 ++ + D+F G H+ H DEA G + ++ F E Sbjct: 106 STPD---HFAHGFTAKDGDSFQGHHSPH-TLFIFDEAVGVASVFWETAESMFNEGGA--- 158 Query: 224 WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF------------------ 265 W+ N + Y W + I + Sbjct: 159 WLAIFNPTDTSSQAYA--EELSGGWHVISMSVLEHPNILAELQGLPPPFPSAIRLSRVDT 216 Query: 266 ------------------HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307 + +A +LG++P Q NN + A Sbjct: 217 LLKKWCRALSPEEPKRATDIHWRDAWYRPGPIAEARLLGRWPSQATNNVWSDGAFQVA-E 275 Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359 + P +GCD+A G D T + RRG + + ET Sbjct: 276 SLLLPASDEPCELGCDVARYGDDFTEIHVRRGGHSLYHEAANGWSTVETAGR 327 >gi|326784562|ref|YP_004324947.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage P-SSM7] gi|310004595|gb|ADO98987.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage P-SSM7] Length = 550 Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 43/351 (12%), Positives = 95/351 (27%), Gaps = 56/351 (15%) Query: 23 ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82 +C F+ + + L F A+ V + F A Sbjct: 33 KCSEDPVYFIQTYIKIVSLDRGLIPF------------AMYDFQSEMVEKFHDNRFNIA- 79 Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 R GK+T+ +LW + + +++ +AN + L Sbjct: 80 KLPRQTGKSTIVTSYLLWYVLFKANVNVAILANKAATSREMLQRL------------QLS 127 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 ++L + S+ +++ + T S +F DE + Sbjct: 128 YENLPKWLQQGILQWNRGSLELENGSKIMAASTSS-------SAVRGMSFNVIFLDEFAF 180 Query: 203 TP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP---LEDWKRYQIDT 255 P D S+ + ++ +T FY +++ ++ ++ Sbjct: 181 VPNHIADQFFSSVYPTISSG--KSTKVIIISTPHGMNMFYKLWHDAERGKNEYIPTEVHW 238 Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA----- 310 V G D+ + + I+ ++E +F P Sbjct: 239 SAVPGRDAAWKDQTIANTSEQQ--FKVEFECEFLGSVDTLISPSKLRTMPYEDPIIQNRG 296 Query: 311 -----IDDLYAPLIMGCDIAGEGG-DKTVVVFRRGNII--EHIFDWSAKLI 353 + I+ D+A D + + E + + I Sbjct: 297 LAVYKQVEKDHNYIVTVDVARGVSQDYSAFCIIDTTTVPYELVAKYRNNDI 347 >gi|145629819|ref|ZP_01785613.1| predicted phage terminase large subunit [Haemophilus influenzae 22.1-21] gi|148827544|ref|YP_001292297.1| hypothetical protein CGSHiGG_04845 [Haemophilus influenzae PittGG] gi|144977965|gb|EDJ87753.1| predicted phage terminase large subunit [Haemophilus influenzae 22.1-21] gi|148718786|gb|ABQ99913.1| hypothetical protein CGSHiGG_04845 [Haemophilus influenzae PittGG] Length = 449 Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 43/289 (14%), Positives = 99/289 (34%), Gaps = 24/289 (8%) Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 P +K GRG GK+ A +++ I+ R + + C + + +++ ++ + Sbjct: 15 PCRYKILY-GGRGSGKSWGVAQLLV-EIAVRTKVRVFCGRELQNSMSDSVIKLIADTIED 72 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 L + FE+Q +++ +E + + + Sbjct: 73 LGYLEEFEVQRNAIYCLKTGSEFMFYGIKNNPN-----------------KIKSLEGIDL 115 Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-PLEDWKRYQI 253 V+ +EA + ++ + + +T N + + Y F I P ++ +I Sbjct: 116 VWIEEAENVSNESWDILIPTIRKERSEIW--VTFNPKNILDPTYQRFVIAPPKNSFVRKI 173 Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 + + D ++ R LG+ I +IE A+ Sbjct: 174 NYDENPYFPETLRLEMEECKERDYELYRHIWLGEPVADSDKVIIKPVWIECAVDAHKKLG 233 Query: 314 --LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360 I+G D+A +G D F G+++ + +W + + + Sbjct: 234 FLPAGRKIVGFDVADDGVDSNANAFVHGSVVLRVDEWHGEDVIGSADRT 282 >gi|260583110|ref|ZP_05850891.1| phage terminase large subunit [Haemophilus influenzae NT127] gi|260093822|gb|EEW77729.1| phage terminase large subunit [Haemophilus influenzae NT127] Length = 445 Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 43/289 (14%), Positives = 99/289 (34%), Gaps = 24/289 (8%) Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 P +K GRG GK+ A +++ I+ R + + C + + +++ ++ + Sbjct: 11 PCRYKILY-GGRGSGKSWGVAQLLV-EIAVRTKVRVFCGRELQNSMSDSVIKLIADTIED 68 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 L + FE+Q +++ +E + + + Sbjct: 69 LGYLEEFEVQRNAIYCLKTGSEFMFYGIKNNPN-----------------KIKSLEGIDL 111 Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-PLEDWKRYQI 253 V+ +EA + ++ + + +T N + + Y F I P ++ +I Sbjct: 112 VWIEEAENVSNESWDILIPTIRKERSEIW--VTFNPKNILDPTYQRFVIAPPKNSFVRKI 169 Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 + + D ++ R LG+ I +IE A+ Sbjct: 170 NYDENPYFPETLRLEMEECKERDYELYRHIWLGEPVADSDKVIIKPVWIECAVDAHKKLG 229 Query: 314 --LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360 I+G D+A +G D F G+++ + +W + + + Sbjct: 230 FLPAGRKIVGFDVADDGVDSNANAFVHGSVVLRVDEWHGEDVIGSADRT 278 >gi|68249883|ref|YP_248995.1| phage terminase large subunit [Haemophilus influenzae 86-028NP] gi|68058082|gb|AAX88335.1| predicted phage terminase large subunit [Haemophilus influenzae 86-028NP] Length = 438 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 40/280 (14%), Positives = 95/280 (33%), Gaps = 23/280 (8%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GRG GK+ A +++ + R + + C + + +++ ++ + L + FE+ Sbjct: 12 GGRGSGKSWGVAQLLIEIA-VRTKVRVFCGRELQNSMSDSVIKLIADTIEDLGYLEEFEV 70 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 Q +++ +E + + + V+ +EA Sbjct: 71 QRNAIYCLKTGSEFMFYGIKNNPN-----------------KIKSLEGIDLVWIEEAENV 113 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-PLEDWKRYQIDTRTVEGID 262 + ++ + + +T N + + Y F I P ++ +I+ Sbjct: 114 SNESWDILIPTIRKERSEIW--VTFNPKNILDPTYQRFVIAPPKNSFVRKINYDENPYFP 171 Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD--LYAPLIM 320 + D ++ R LG+ I +IE A+ I+ Sbjct: 172 ETLRLEMEECKERDYELYRHIWLGEPVADSDKVIIKPVWIECAVDAHKKLGFLPAGRKIV 231 Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360 G D+A +G D F G+++ + +W + + + Sbjct: 232 GFDVADDGVDSNANAFVHGSVVLRVDEWRGEDVIGSADRT 271 >gi|329122215|ref|ZP_08250807.1| phage terminase large subunit [Haemophilus aegyptius ATCC 11116] gi|327474100|gb|EGF19511.1| phage terminase large subunit [Haemophilus aegyptius ATCC 11116] Length = 452 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 93/280 (33%), Gaps = 24/280 (8%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GRG GK+ A ++ T+P + ++C + + +++ ++ + ML + +F++ Sbjct: 27 GGRGSGKSFSIARALVLRAYTQP-IRVLCCREIQKSISDSVIQMLADQIEMLGLQAFFDV 85 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 Q + + + + + T V+ +E Sbjct: 86 Q--------------KTQIIGQNGSRFTFA----GLKTNITSIKSMTGIDVVWVEEGENV 127 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262 ++ E I++ N + + Y F P E K ++ + Sbjct: 128 SKESWDVLIPTIREDGSQI--IVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185 Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIM 320 E + D ++ R G+ I +I+ A+ I+ Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGEPVADSDKVIIKPLWIDAAVDAHKKLGFVAAGRKII 245 Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360 G D+A EG D F G+++ + +W + + + Sbjct: 246 GFDVADEGSDANANAFVHGSVVLRMDEWRGEDVIGSADRT 285 >gi|168704975|ref|ZP_02737252.1| hypothetical protein GobsU_35915 [Gemmata obscuriglobus UQM 2246] Length = 519 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 47/322 (14%), Positives = 87/322 (27%), Gaps = 63/322 (19%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 ++ + A +GK+ L ++ W TR + A ++ Q+K+ LW EV + Sbjct: 62 YRVLVKASHSVGKSHLAGGLVNWWYDTRFPGVCLTTAPTDRQVKDVLWKEVRRQRRK--- 118 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + + D T ++ +F G H + + Sbjct: 119 -------------RPGFVGPKMPRLESDP---THFAHGFTARDATSFQGQH-EASILLIF 161 Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257 DEA G ++ W+ N Y W I Sbjct: 162 DEAVGIDGDFWEAAESMC--QGAEYGWLAIFNPTDTTSRAYLE-EQAGSRWTVIDIPATE 218 Query: 258 VEGIDSG---------------FHEGIISRYG---LDSDVARIEILGQFPQQEVNNFIPH 299 I + + + ++ D +I P + P Sbjct: 219 HPNIAAELVARPPEYPSAVRLNWLRDRLEQWAERIEPGDATPTDIQFPNPDGSPQWWRPG 278 Query: 300 NYIEE----------------AMSREAIDDLYAPL------IMGCDIAGEGGDKTVVVFR 337 + + R P+ +GCD+A G D T + R Sbjct: 279 PLADARLLARWPASGCGVWSDPVWRSVERAAPDPVPERWLPQIGCDVARFGEDWTELHVR 338 Query: 338 RGNIIEHIFDWSAKLIQETNQE 359 GN+ H + + T + Sbjct: 339 CGNVSLHHEAHNGWDTKRTTER 360 >gi|228924410|ref|ZP_04087639.1| hypothetical protein bthur0011_53510 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835241|gb|EEM80653.1| hypothetical protein bthur0011_53510 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 293 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 1/138 (0%) Query: 224 WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283 + N R +G FYD N + +K +++ + E + +YG SDV R+ Sbjct: 1 MFLCGNPTRTSGVFYDSHNRDRDLYKIHKVSSLDSPRTSKDNIEVLKKKYGEGSDVWRVR 60 Query: 284 ILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIE 343 +LG+FP+ E + FIP +E+A S + L +G D+A G D+TV+ R GN + Sbjct: 61 VLGEFPKAEADAFIPLEIVEQAASCKVEPT-GETLDLGVDVARFGDDETVIAPRIGNKVF 119 Query: 344 HIFDWSAKLIQETNQEGC 361 + + + ET Sbjct: 120 KLLNHYKQDTMETAGHVL 137 >gi|229844502|ref|ZP_04464642.1| predicted phage terminase large subunit [Haemophilus influenzae 6P18H1] gi|229812751|gb|EEP48440.1| predicted phage terminase large subunit [Haemophilus influenzae 6P18H1] Length = 452 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 94/280 (33%), Gaps = 24/280 (8%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GRG GK+ A ++ T+P + ++C + + +++ ++ + ML + +F++ Sbjct: 27 GGRGSGKSFSIARALVLRAYTQP-IRVLCCREIQKSISDSVIQMLADQIEMLGLQAFFDV 85 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 Q + + + + + T V+ +E Sbjct: 86 Q--------------KTQIIGQNGSRFTFA----GLKTNITSIKSMTGIDVVWVEEGENV 127 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262 ++ E I++ N + + Y F P E K ++ + Sbjct: 128 SKESWDVLIPTIREDGSQI--IVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185 Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIM 320 E ++ D ++ R G+ I +I+ A+ I+ Sbjct: 186 KELMEDMVQMRERDYELYRHVYEGEPVADSDKVIIKPLWIDAAVDAHKKLGFVAAGRKII 245 Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360 G D+A EG D F G+++ + +W + + + Sbjct: 246 GFDVADEGSDANANAFVHGSVVLRMDEWHGEDVIGSADRT 285 >gi|326783799|ref|YP_004324193.1| terminase DNA packaging enzyme large subunit [Synechococcus phage S-SSM7] gi|310003811|gb|ADO98206.1| terminase DNA packaging enzyme large subunit [Synechococcus phage S-SSM7] Length = 552 Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats. Identities = 47/380 (12%), Positives = 96/380 (25%), Gaps = 64/380 (16%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + + ++++ E L A+ F + + L F Sbjct: 14 LKKANVAQNFTKKQVAEFLKCAQ---DPVYFAKNYVQIINLDEGLVPF------------ 58 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + VNN + F R GK+T +L ++I +AN Sbjct: 59 EMYDFQEKLVNNFHNNRFNIC-KMPRQSGKSTTVVSYLLHYAIFNDSVTIGILANKAQTA 117 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 ++ L ++L + SM +++K I T Sbjct: 118 RDLLGRL------------QIAYENLPKWMQQGIIAWNKGSMELENKSKIIAAST----- 160 Query: 181 PDTFVGPHNTHGMAVFNDEASGT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236 + +F DE + D S+ + ++ +T R Sbjct: 161 --SASAVRGMSFNIIFLDEFAFVANHLADDFFSSVYPTISSG--KSTKVIIVSTPRGMNH 216 Query: 237 FYDIFNIP---LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293 FY +++ ++ + V G D + E I R+E +F Sbjct: 217 FYRLWHDAELGRNEYVTTDVHWSEVPGRDEAWKEQTIKNTSE--AQFRVEFECEFLGSVD 274 Query: 294 NNFIPHNYIEEAMSREA-----------IDDLYAPLIMGCDIAGE-GGDKTVVVFRRGNI 341 P + D+A D + + Sbjct: 275 TLIAPSKLKTMVYDEPINTGKRGGEIYQNPIEKHNYSITVDVARGVEKDYSAFIVFD--- 331 Query: 342 IEHIFDWSAKLIQETNQEGC 361 + K++ + Sbjct: 332 ---TTTFPYKVVAKYRNNTI 348 >gi|326782137|ref|YP_004322538.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage P-HM1] gi|310004344|gb|ADO98737.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage P-HM1] Length = 560 Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats. Identities = 45/366 (12%), Positives = 97/366 (26%), Gaps = 61/366 (16%) Query: 9 QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68 Q ++++ E L +C F + E W Sbjct: 20 QFSKEQIQEYL---KCKEDPVYFARNYIKIISLD---EGIVPFDMW---------DFQEE 64 Query: 69 NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128 + + + F A R GK+T +L I +++ +AN + ++ L Sbjct: 65 LIESFHENRFNIA-KLPRQTGKSTTCVSYLLHYILFNDNVNVGILANKLSTARDLLGRL- 122 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188 + L L + SM +++ + T + Sbjct: 123 -----------QLAYEQLPLWLQQGIVVYNKGSMELENGSKILAAST-------SASAVR 164 Query: 189 NTHGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF--- 241 +F DE + P + S+ T + ++ +T FY ++ Sbjct: 165 GMSFNIIFLDEFAFIPNHIAEQFFSSVYPTITSGTSTK--VIIISTPNGMNHFYKLWVDA 222 Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301 + ++ V G D+ + E I+ E +F V+ I Sbjct: 223 QKGRNGYAWSEVHWSKVPGRDAKWKEQTIANTSERQ--FTQEFDCEFL-GSVDTLITAAK 279 Query: 302 IEEAMSREA-----------IDDLYAPLIMGCDIAGE-GGDKTVVVFRRGNII--EHIFD 347 + + I+ D++ D + V + Sbjct: 280 LRTLTYDDPLTTNGSLDVYENPVRDHDYIICVDVSRGLAQDYSAFVVIDITHAPWRLVAK 339 Query: 348 WSAKLI 353 + + Sbjct: 340 YRDHDV 345 >gi|257459276|ref|ZP_05624390.1| phosphatase, Ppx/GppA family [Campylobacter gracilis RM3268] gi|257443289|gb|EEV18418.1| phosphatase, Ppx/GppA family [Campylobacter gracilis RM3268] Length = 431 Score = 136 bits (341), Expect = 7e-30, Method: Composition-based stats. Identities = 58/308 (18%), Positives = 96/308 (31%), Gaps = 27/308 (8%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 E + C I GR G T A + + G I+ + Sbjct: 3 ELALDLRYTPQQKAVFFQNDARFCTIEKGRRFGFTKGTANACIEWLL--EGQKILWVDTI 60 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 LK L LP W + K I Sbjct: 61 AANLKRYFERYFLPELRQLPKELW--------------------NWNAQDKQLKICGGYL 100 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 + V +EA + + + NPN + + N Sbjct: 101 DFRSAERPENIEGFGYDTVILNEAGIILKDPYLWDNAISPMLLDNPNSRAFIGGVPKGKN 160 Query: 235 GWFYDIFNIPLED--WKRYQIDTRTVEGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQ 291 +F + W+ +Q + + + +++ G DSDVAR EI G+F Sbjct: 161 KFFDLAQRGMRNEKGWRNFQFSSYDNPLLQKEEIDRLVAELGGADSDVARQEIFGEFLDT 220 Query: 292 EVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 N+ IE A ++ D AP+I D+A EG D++V+ R+G+ +E + + Sbjct: 221 TSNSVFSLAAIEAAFRKQRYFDAGAPVIWALDVAREGDDESVLCKRQGDSVEPLKPYRIA 280 Query: 352 LIQETNQE 359 E +E Sbjct: 281 STSELARE 288 >gi|282880015|ref|ZP_06288737.1| hypothetical protein HMPREF9019_0946 [Prevotella timonensis CRIS 5C-B1] gi|281306129|gb|EFA98167.1| hypothetical protein HMPREF9019_0946 [Prevotella timonensis CRIS 5C-B1] Length = 459 Score = 136 bits (341), Expect = 7e-30, Method: Composition-based stats. Identities = 52/333 (15%), Positives = 104/333 (31%), Gaps = 72/333 (21%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRP----------GMSIICIANSETQLKNTLWAEVS 129 A+++G GK + A + + P I A + Q N + EV+ Sbjct: 2 VAVASGTSRGKDFVAACAAMCFMYLTPRWNINHRLIQNTKIAMTAPTGRQCINIMIPEVA 61 Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189 + + + ++ + +T S++ + + G H Sbjct: 62 RLFRNASVLPGRMLSDG---------------IRTNNAEWFLTAFKASDDNTEAWSGFHA 106 Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249 + M EASG + +I G + N G+ +K Sbjct: 107 VNTMF-VVTEASGVSETTFNAIEGNLQGNSRLLLVF---NPNVTTGYAAKAM--KSSRFK 160 Query: 250 RYQIDTRTVEGI-----------DSGFHEGIISRY----------------------GLD 276 ++++++ E + D + + + + Sbjct: 161 KFRLNSLNAENVIKKKNVIPGQVDYEWVKDKVHNWCELIQKEDFNNGEGDFMFEDSFYRP 220 Query: 277 SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL-----IMGCDIAGEGGDK 331 +D+ RI++LG FP+ + IP ++E A R + + +G D+AG G D Sbjct: 221 NDLFRIKVLGLFPKASEDTLIPFEWLELAHDRWKKLNAEDFVPRKYARVGIDVAGMGRDS 280 Query: 332 TVVVFRRGNIIEHIFDWS---AKLIQETNQEGC 361 + V R GN + I + E Sbjct: 281 SCFVLRYGNYVPEIKIHQSGGKADHMKVAGEAV 313 >gi|315649222|ref|ZP_07902312.1| hypothetical protein PVOR_28644 [Paenibacillus vortex V453] gi|315275441|gb|EFU38799.1| hypothetical protein PVOR_28644 [Paenibacillus vortex V453] Length = 189 Score = 135 bits (340), Expect = 9e-30, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 81/223 (36%), Gaps = 45/223 (20%) Query: 15 LHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSN 74 L ++ F P WQ + M V Sbjct: 11 LLDLYW-----DDPVAFA-----------EDMMGFDPDDWQCDVMMDVTQF--------- 45 Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 + ++ +G+G+GKT L A +++W + RP ++C A ++ QL + LW EVSKWL Sbjct: 46 ---PRTSVRSGQGVGKTGLEAALVIWFLCCRPNPKVVCTAPTKQQLHDVLWTEVSKWLEN 102 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 ++ + ++ + + T RT +P+ G H M Sbjct: 103 SMVKNLLKWTKTKVYM------------IGHEQRWFATARTA--NKPENMQGFH-EDYML 147 Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 DEASG D I ++ILG + N R +G F Sbjct: 148 FIVDEASGVSDPIMEAILGTLSGAENKLLMC--GNPTRTSGVF 188 >gi|113200627|ref|YP_717790.1| terminase large subunit [Synechococcus phage syn9] gi|76574526|gb|ABA47091.1| terminase large subunit [Synechococcus phage syn9] Length = 549 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 45/374 (12%), Positives = 109/374 (29%), Gaps = 61/374 (16%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + + + + ++ E++ +C + F+ + K L F Sbjct: 13 LKKANVSQEFTPDQVAEVI---KCSENPVYFIKNYIKIVSLDKGLIPFD----------- 58 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + V + F A R GK+T+ +LW + +++ +AN Sbjct: 59 -MYYFQEEMVQKFHDNRFNIA-KLPRQSGKSTIVTSYLLWYVLFNANVNVAILANKAATA 116 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 + L ++L + S+ +++ + T Sbjct: 117 REMLQRL------------QLSYENLPKWLQQGILQWNRGSLELENGSKILAAST----- 159 Query: 181 PDTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236 + +F DE + P D S+ + ++ +T Sbjct: 160 --SASAVRGMSFNVIFLDEFAFVPNHVADQFFSSVYPTISSG--KSTKVIIISTPHGMNM 215 Query: 237 FYDIFNIP---LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293 FY +++ ++ ++ V G D+ + E I R+E +F V Sbjct: 216 FYKLWHDAERKANEYIPTEVHWSEVPGRDAAWKEQTIKNTSEQQ--FRVEFECEFL-GSV 272 Query: 294 NNFIPHNYIEEAMSREA-----------IDDLYAPLIMGCDIAGE-GGDKTVVVFRRGNI 341 + I + + + + ++ D++ GD + + Sbjct: 273 DTLISPSKLRTMVYGDPIAEKNGLSMYEKTIQGHTYVITADVSRGVSGDYSAFLVIDTTT 332 Query: 342 I--EHIFDWSAKLI 353 I + + + I Sbjct: 333 IPYKLVAKYRNNDI 346 >gi|326783087|ref|YP_004323484.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage P-HM2] gi|310005505|gb|ADO99893.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage P-HM2] Length = 560 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 46/365 (12%), Positives = 96/365 (26%), Gaps = 59/365 (16%) Query: 9 QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68 Q + ++ E L +C F M + E W Sbjct: 20 QFTKHQIQEYL---KCKEDPVYFAMNYIKIISLD---EGIVPFKMW---------DFQQE 64 Query: 69 NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128 + + + F A R GK+T +L I +++ +AN + ++ L Sbjct: 65 LIESFHEHRFNIA-KLPRQTGKSTTCVSYLLHYILFNDNVNVGILANKLSTARDLL---- 119 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188 R + L L + SM +++ + T + Sbjct: 120 --------SRLQLAYEQLPLWIQQGIVVYNKGSMELENGSKILAAST-------SASAVR 164 Query: 189 NTHGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF--- 241 +F DE + P + S+ T + ++ +T FY ++ Sbjct: 165 GMSFNIIFLDEFAFIPNHIAEQFFSSVYPTITSGTSTK--VIIISTPNGMNHFYKLWVDA 222 Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301 + ++ V G D+ + E I+ E +F Sbjct: 223 QKGRNGYAWNEVHWSKVPGRDAKWKEQTIANTSERQ--FTQEFDCEFLGSVDTLITASKL 280 Query: 302 ----------IEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVFRRGNII--EHIFDW 348 ++ I+ D++ D + V + + Sbjct: 281 RVLTYDDVMTTNGSLDIYEKPIDKHEYIITVDVSRGLAQDYSAFVVIDITHAPWRLVAKY 340 Query: 349 SAKLI 353 K + Sbjct: 341 RDKDV 345 >gi|294789575|ref|ZP_06754810.1| putative terminase B protein [Simonsiella muelleri ATCC 29453] gi|294482512|gb|EFG30204.1| putative terminase B protein [Simonsiella muelleri ATCC 29453] Length = 516 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 54/332 (16%), Positives = 111/332 (33%), Gaps = 43/332 (12%) Query: 24 CVLSFKNFV----MRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFK 79 + + V P G + P Q + + A+ K Sbjct: 3 ILNNPLYHVFVKRYANDPVGFVLGVCGNSVSPD--QEKLLNAIID-----------PTAK 49 Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRP----------GMSIICIANSETQLKNTLWAEVS 129 ++ +G G GKT + LW + P G + A + Q+ + +W E++ Sbjct: 50 VSVVSGTGTGKTMSFGRIALWHLLCFPVAKYDGKIEIGSNTYIGAPAIKQVGDGVWKEIT 109 Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189 + + + + + + + IT + + + G H Sbjct: 110 DAVQAMRANRATAWLAEYI-----VVQAERVYIIDYKATWFITKFAMQQGQSVSIAGKHR 164 Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED-- 247 + + DEA+G D + I G T+ + G+FY+ + ++ Sbjct: 165 FYQ-LIIIDEAAGVSDEHYEVINGTQTQGGNRTLLASQG--VKQGGFFYETHHKLNKENG 221 Query: 248 --WKRYQIDTRTVEGIDSGFHEG-IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE 304 W + + + + E + G ++ R+ +LG+F + E N + IE Sbjct: 222 GNWTALCFSSENSPFVTTEWLENVALQAGGKNTTEYRVRVLGKFAENEHENLLTRAQIEP 281 Query: 305 AMSREAIDDLYAP--LIMGCDI-AGEGGDKTV 333 + I + P ++ D+ AGE D +V Sbjct: 282 RIDTLPIIEKGEPFGWLLLVDVGAGEYRDDSV 313 >gi|260580755|ref|ZP_05848581.1| phage terminase large subunit [Haemophilus influenzae RdAW] gi|260092572|gb|EEW76509.1| phage terminase large subunit [Haemophilus influenzae RdAW] Length = 447 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 89/280 (31%), Gaps = 24/280 (8%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GRG GK+ A ++ P + ++C + + +++ ++ + ML + +F++ Sbjct: 27 GGRGSGKSFSIARALVLRAYQSP-VRVLCCREIQKSISDSVIQMLADQIEMLSLQAFFDV 85 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 Q + + + + + T V+ +E Sbjct: 86 Q--------------KTQIIGQNGSRFTFA----GLKTNITSIKSMTGIDVVWVEEGENV 127 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262 ++ E I++ N + + Y F P E K ++ + Sbjct: 128 SKESWDILIPTIREDGSQI--IVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185 Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIM 320 E + D ++ R G+ I +IE A+ + Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWIEYAVDAHLKLGFTAKGMKKV 245 Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360 G D+A EG D F G+++ I W + ++ Sbjct: 246 GFDVADEGADSNANAFVHGSVVLDIEVWKNGDVIDSANRT 285 >gi|148826888|ref|YP_001291641.1| phage terminase large subunit [Haemophilus influenzae PittGG] gi|148718130|gb|ABQ99257.1| predicted phage terminase large subunit [Haemophilus influenzae PittGG] Length = 366 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 42/280 (15%), Positives = 89/280 (31%), Gaps = 24/280 (8%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GRG GK+ A ++ P + ++C + + +++ ++ + ML R +F++ Sbjct: 27 GGRGSGKSFSIARALVLRAYQSP-VRVLCCREIQKSISDSVIQMLADQIEMLGLRAFFDV 85 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 Q + + + + + T V+ +E Sbjct: 86 Q--------------KTQIIGQNGSRFTFA----GLKTNITSIKSMTGIDVVWVEEGENV 127 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262 ++ E I++ N + + Y F P E K ++ + Sbjct: 128 SKESWDILIPTIREDGSQI--IVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185 Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIM 320 E + D ++ R G+ I +IE A+ + Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWIEYAVDAHLKLGFTAKGMKKV 245 Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360 G D+A EG D F G+++ I W + ++ Sbjct: 246 GFDVADEGADSNANAFVHGSVVLDIEVWKNGDVIDSANRT 285 >gi|319776448|ref|YP_004138936.1| phage terminase large subunit [Haemophilus influenzae F3047] gi|319897217|ref|YP_004135412.1| phage terminase large subunit [Haemophilus influenzae F3031] gi|329123931|ref|ZP_08252483.1| phage terminase large subunit [Haemophilus aegyptius ATCC 11116] gi|317432721|emb|CBY81084.1| predicted phage terminase large subunit [Haemophilus influenzae F3031] gi|317451039|emb|CBY87270.1| predicted phage terminase large subunit [Haemophilus influenzae F3047] gi|327468126|gb|EGF13613.1| phage terminase large subunit [Haemophilus aegyptius ATCC 11116] Length = 447 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 40/280 (14%), Positives = 89/280 (31%), Gaps = 24/280 (8%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GRG GK+ A ++ P + ++C + + +++ ++ + ML + +F++ Sbjct: 27 GGRGSGKSFSIARALVLRAYQSP-VRVLCCREIQKSISDSVIQMLADQIEMLGLQAFFDV 85 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 Q + + + + + T V+ +E Sbjct: 86 Q--------------KTQIIGQNGSRFTFA----GLKTNITSIKSMTGIDVVWVEEGENV 127 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262 ++ E I++ N + + Y F P E K ++ + Sbjct: 128 SKESWDILIPTIREDGSQI--IVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185 Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIM 320 E + D ++ R G+ I +IE A+ + Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWIESAVDAHLKLGFTTKGMKKV 245 Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360 G D+A EG D F G+++ + W + ++ Sbjct: 246 GFDVADEGADANANAFVHGSVVLGVEVWKNGDVIDSANRT 285 >gi|145629503|ref|ZP_01785301.1| predicted phage terminase large subunit [Haemophilus influenzae 22.1-21] gi|145641440|ref|ZP_01797019.1| predicted phage terminase large subunit [Haemophilus influenzae R3021] gi|144978346|gb|EDJ88110.1| predicted phage terminase large subunit [Haemophilus influenzae 22.1-21] gi|145273983|gb|EDK13850.1| predicted phage terminase large subunit [Haemophilus influenzae 22.4-21] gi|309750959|gb|ADO80943.1| Probable bacteriophage terminase, large subunit [Haemophilus influenzae R2866] Length = 447 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 40/280 (14%), Positives = 89/280 (31%), Gaps = 24/280 (8%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GRG GK+ A ++ P + ++C + + +++ ++ + ML + +F++ Sbjct: 27 GGRGSGKSFSIARALVLRAYQSP-VRVLCCREIQKSISDSVIQMLADQVEMLGLQDFFDV 85 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 Q + + + + + T V+ +E Sbjct: 86 Q--------------KTQIIGQNGSRFTFA----GLKTNITSIKSMTGIDVVWVEEGENV 127 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262 ++ E I++ N + + Y F P E K ++ + Sbjct: 128 SKESWDILIPTIREDGSQI--IVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185 Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIM 320 E + D ++ R G+ I +IE A+ + Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWIESAVDAHLKLGFTTKGMKKV 245 Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360 G D+A EG D F G+++ + W + ++ Sbjct: 246 GFDVADEGADANANAFVHGSVVLGVEVWKNGDVIDSANRT 285 >gi|226227228|ref|YP_002761334.1| hypothetical protein GAU_1822 [Gemmatimonas aurantiaca T-27] gi|226090419|dbj|BAH38864.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 549 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 53/283 (18%), Positives = 90/283 (31%), Gaps = 29/283 (10%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK-WLSMLPHR 138 A+++G G GKT L A ++LW I+ P +A Q + +W EV++ W Sbjct: 70 VAVASGTGTGKTFLEAVLLLWWIAVEPDSIATTVATKADQQEKGIWREVARHWPRFQACF 129 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 E+ +L + W + EE G H + + D Sbjct: 130 PEAELTTLRIRMEPWRGDAW-------GAWGITAAPKAGEESSSAVQGLHA-KRLLILVD 181 Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 E G P + +++ T N + +I Sbjct: 182 ETPGVPQPVMTALVNTAT--GEENVIAAFGNPDYQADPLGQFAET--KRVTAIRISALDH 237 Query: 259 EGI-----------DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307 + +YG++S V + + G P+Q + I + A Sbjct: 238 PNVVLGVERIPGAATRLSIATREDKYGVESGVYQSRVRGIAPEQSASALIHLAWCVAAAD 297 Query: 308 REAIDDLYA----PLIMGCDIAG-EGGDKTVVVFRRGNIIEHI 345 R A P +G D+A E GDK V +G + + Sbjct: 298 RAESVQHAALALGPKALGVDVAQSENGDKAAVAMGQGARLLSV 340 >gi|218290759|ref|ZP_03494841.1| protein of unknown function DUF264 [Alicyclobacillus acidocaldarius LAA1] gi|218239297|gb|EED06496.1| protein of unknown function DUF264 [Alicyclobacillus acidocaldarius LAA1] Length = 422 Score = 130 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 45/303 (14%), Positives = 88/303 (29%), Gaps = 38/303 (12%) Query: 49 SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108 S+P QL + H + + F+ A + GR GKT A + PG Sbjct: 7 SEPTSKQLR-LRLYTPHSGQVALHRSTARFRVA-TCGRRWGKTYACANEIAKWAWEHPGA 64 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 +A + Q + + +E++ + Sbjct: 65 MTWWVAPTYRQTLTAY-----------------------RIITRNFHGAIEKATTTHMRI 101 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK-SILGFFTELNPNRFWIMT 227 + + F + DEA+ P + ++ ++ + Sbjct: 102 EWKSGSITEFRSTENFDALRGEGLDFLVVDEAAMVPKEAWEAALRPTLSDKAGRAIIV-- 159 Query: 228 SNTRRLNGWFYDIFNIPLE----DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283 +T + WFY ++ + +W+ ++ T I E + SDV R E Sbjct: 160 -STPKGRNWFYHVWARGQDPAFPEWESFRFPTLANPYIPPEEVEEARTTL--PSDVFRQE 216 Query: 284 ILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIE 343 +F + F E ++G D+A D +V+V Sbjct: 217 YEAEFLEDSAGVFRGIRDCISGQ--EEEPQPGRRYVVGWDVAKH-QDFSVLVVMDLERAH 273 Query: 344 HIF 346 + Sbjct: 274 VVK 276 >gi|225155389|ref|ZP_03723881.1| hypothetical protein ObacDRAFT_9437 [Opitutaceae bacterium TAV2] gi|224803845|gb|EEG22076.1| hypothetical protein ObacDRAFT_9437 [Opitutaceae bacterium TAV2] Length = 479 Score = 130 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 56/297 (18%), Positives = 102/297 (34%), Gaps = 41/297 (13%) Query: 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISA-GRGIGK-TTLNAWMMLWLISTRPGMSII 111 WQ + M +V K ++A G GK + + + L L+ PG +++ Sbjct: 38 WQAKIMASVWSG-------------KPTVAATPNGAGKTSVIIVALALTLLHEFPGATVV 84 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + + + + ++A ++ + W + + I Sbjct: 85 LTSATYRAVCDQIFASLAVHQAKFSAWKW-----------------NDTEINDGQGGRII 127 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 T R + F + + DEA D I + + + S+ Sbjct: 128 GFATDRGGRFEGFHAYPGR-PLLIILDEAKSIADDIFVAA-----DRCQPTMLLYISSWG 181 Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291 L G F+D F+ + + ++Q I F E + ++YG DSD+ R ILGQ P+ Sbjct: 182 GLFGRFHDAFS--QDRFAQFQAGIADCPHITPEFIEAMRAQYGEDSDIYRSMILGQRPKG 239 Query: 292 EVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348 F+ E + CD A D+ V+ R GN + + W Sbjct: 240 NETGFVVPFVDYERCESNPPVWQEGTKQVFCDFAET-SDECVIAKRDGNRLSIVDAW 295 >gi|68250076|ref|YP_249188.1| phage terminase large subunit [Haemophilus influenzae 86-028NP] gi|68058275|gb|AAX88528.1| predicted phage terminase large subunit [Haemophilus influenzae 86-028NP] Length = 447 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 90/280 (32%), Gaps = 24/280 (8%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GRG GK+ A ++ P + ++C + + +++ ++ + ML +++F++ Sbjct: 27 GGRGSGKSFSIARALVLRAYQSP-VRVLCCREIQKSISDSVIQMLADQIEMLGLQNFFDV 85 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 Q + + + + + T V+ +E Sbjct: 86 Q--------------KTQIIGQNGSRFTFA----GLKTNITSIKSMTGIDVVWVEEGENV 127 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262 ++ E I++ N + + Y F P E K ++ + Sbjct: 128 SKESWDILIPTIREDGSQI--IVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185 Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIM 320 E + D ++ R G+ I +IE A+ + Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWIECAVDAHLKLGFTAKGMKKV 245 Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360 G D+A EG D F G+++ I W + ++ Sbjct: 246 GFDVADEGADSNDNAFVHGSVVLDIEVWKNGDVIDSANRT 285 >gi|119386463|ref|YP_917518.1| PBSX family phage terminase large subunit [Paracoccus denitrificans PD1222] gi|119377058|gb|ABL71822.1| phage terminase, large subunit, PBSX family [Paracoccus denitrificans PD1222] Length = 441 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 43/259 (16%), Positives = 85/259 (32%), Gaps = 20/259 (7%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GRG GK+ A M+ T PG+S IC+ + + L +++ + + Sbjct: 26 GGRGSGKSWDRAMHMIVRHLTEPGLSSICLRDVQKSLDQSVFKLLVE------------- 72 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + L + + + + I +E + + +EA+ Sbjct: 73 TAARLGVAEAIRPVESDRIIRTPGNGIIAFNGMNEFNAENIKSL--EGFDIAWWEEAATA 130 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL---EDWKRYQIDTRTVEG 260 + + + T N R + + + + + R Sbjct: 131 GQGPLDMLRPTLRKPGSQIW--FTYNPRLRSDPVDVMMRQDARFADSRTVVEANWRDNPF 188 Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIM 320 E + D R G + + FI + EAM+R+ + L++ Sbjct: 189 RGPELEEERLLDLAGDEARYRHIWEGDYEAESDMQFIGGGLVREAMARQPFSQIGDELVL 248 Query: 321 GCDIAGEGGDKTVVVFRRG 339 G D+A G D++V+ RRG Sbjct: 249 GVDVARFGDDRSVIWARRG 267 >gi|86372240|gb|ABC95184.1| GP17-terminase [Stenotrophomonas phage Smp14] Length = 536 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 50/349 (14%), Positives = 93/349 (26%), Gaps = 58/349 (16%) Query: 9 QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68 Q E EL E+ V F P F +Q + ++ V + Sbjct: 28 QFSEWELDELEKCQNDVHYFIANYCMIISLDDGLVPFRMFG----YQKKMVDIVLAN--- 80 Query: 69 NVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127 + +I R +GKTT+ A ++LW I +AN Q + L Sbjct: 81 ----------RFSIFKWPRQMGKTTVVAAILLWYAIFNEEYRIAILANKGDQSREILARL 130 Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187 + L + + ++ + ++ T T Sbjct: 131 ------------QLMYEELPWFMQVGVSVWNKGNIKLGNRSEVFTAAT-------GGSSI 171 Query: 188 HNTHGMAVFNDEASGTPDII-NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246 ++ DE + + + + I+TS FY I+ Sbjct: 172 RGKSVNLMYLDEFAFVENDVDFYTSTYPVVTSGTKTKVIITSTPN-GMNLFYKIWTDSTN 230 Query: 247 DWKRYQID---TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI- 302 Y + D + + + E L +F P Sbjct: 231 GKNNYVHNEAFWHDHPKRDQAWKDEQLRNMSERQ--FEQEFLCKFQGSSDTLLSPAKLEQ 288 Query: 303 --------EEAMSREAI----DDLYAPLIMGCDIA-GEGGDKTVVVFRR 338 E +R+ A ++ D++ G G D +V+ Sbjct: 289 LTYQDHIRELGGNRDFKIYEDPIKDASYVVTVDVSEGIGKDYSVISVFD 337 >gi|329119006|ref|ZP_08247700.1| phage terminase large subunit [Neisseria bacilliformis ATCC BAA-1200] gi|327464879|gb|EGF11170.1| phage terminase large subunit [Neisseria bacilliformis ATCC BAA-1200] Length = 449 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 44/280 (15%), Positives = 91/280 (32%), Gaps = 23/280 (8%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GRG GK+ A + + + R G I+C + L ++++ +++ ++ L + FE+ Sbjct: 20 GGRGSGKSYFLAELAVEVA-RRIGTVILCAREFQGSLDDSVYQLLTETIARLGYTQEFEI 78 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 S+ + + +EA Sbjct: 79 LKSSIR---------------HKGTGAKFVFYGVKNNITKIKSIQGVG--ICWVEEAEAV 121 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRYQIDTRTVEGI- 261 ++ W+ N + + Y F P +D + + Sbjct: 122 TKNSWDVLIPSIRGDKNAEIWVSF-NPKNILDDTYQRFIVHPPKDSIVLKANYDINPHFA 180 Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLI 319 D+ ++ D D+ R LG+ I ++IE A+ I Sbjct: 181 DTPLLADMLECKERDEDLYRHIWLGEPVADSELAIIKPSWIEAAIDAHEKLGFSAAGRRI 240 Query: 320 MGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359 +G D+A EG D V R G+++ + W + + + + Sbjct: 241 LGFDVADEGDDANATVLRHGSVVTDMQQWRGQDVIYSADK 280 >gi|301170180|emb|CBW29784.1| predicted phage terminase large subunit [Haemophilus influenzae 10810] Length = 447 Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 88/280 (31%), Gaps = 24/280 (8%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GRG GK+ A ++ P + ++C + + +++ ++ + ML + +F++ Sbjct: 27 GGRGSGKSFSIARALVLRAYQSP-VRVLCCREIQKSISDSVIQMLADQVEMLGLQDFFDV 85 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 Q + + + + T V+ +E Sbjct: 86 QKTQIIEQ--------------NGSRFTFA----GLKTNITSIKSMTGIDVVWVEEGENV 127 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262 ++ E I++ N + + Y F P E K ++ + Sbjct: 128 SKESWDILIPTIREDGSQI--IVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185 Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIM 320 E + D ++ R G+ I +IE A+ + Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWIESAVDAHLKLGFTTKGMKKV 245 Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360 G D+A EG D F G+++ I W + ++ Sbjct: 246 GFDVADEGADSNANAFVHGSVVLDIEVWKNGYVIDSANRT 285 >gi|150021340|ref|YP_001306694.1| hypothetical protein Tmel_1462 [Thermosipho melanesiensis BI429] gi|149793861|gb|ABR31309.1| protein of unknown function DUF264 [Thermosipho melanesiensis BI429] Length = 421 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 45/289 (15%), Positives = 90/289 (31%), Gaps = 37/289 (12%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 I AGR GKT A + + + P +I S Q K + +++ + + P + + Sbjct: 38 VICAGRRFGKTNYVAGKIFYYATIHPKSRVIVGGPSLDQAK-IYYDLLTEAIELSPLKGF 96 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + S P+ + ++ V EA Sbjct: 97 VKKTKDSPFPTIYLKNGSSITVRST---------------AHNGKYLRGRKVNLVVLTEA 141 Query: 201 SGTPDIINK-SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP---LEDWKRYQIDTR 256 + D + + I + ++ +T +FY+ + + + Sbjct: 142 AFIKDSVYEQVITPMKLDTGAP---VILESTPNGMNYFYEEYQRGLKNKKHTISFHATVY 198 Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA 316 +D E ++ V R E L +F + F P + EA + + Y Sbjct: 199 DNPFLDQEEIENAKAKT--PDYVWRQEYLAEFVD-DDTVFFPWKILVEAFE-DYKPEGYK 254 Query: 317 P---LIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGCP 362 +G D+A D TV+ I+ + + K+ + P Sbjct: 255 DGRKYSIGVDLAKY-RDYTVI------IVLDVTEEPFKIAEFHRFNQIP 296 >gi|282598783|ref|YP_003359102.1| putative large subunit terminase [Clavibacter phage CMP1] gi|262212571|gb|ACY35907.1| putative large subunit terminase [Clavibacter phage CMP1] Length = 872 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 90/288 (31%), Gaps = 32/288 (11%) Query: 91 TTLNAWMMLWLISTRPG--MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148 T L ++ W +S P S++ A Q+ ++ + ++ R + ++ Sbjct: 424 TRLAGDLVTWFVSVFPPEETSVMVSAPIREQIDVMMFRYLRDNYNLAIEREQPLIGEITK 483 Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208 P + +D K R +F G H +AV DEA G P+ + Sbjct: 484 WP------YWQVGAPLDKKLVMP-KRPADGNLISSFQGIH-DGHVAVVLDEAGGLPEDLY 535 Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED--WKRYQIDTRTVEGIDSGFH 266 T + N + N F++ F + W R+ I Sbjct: 536 IGANAVTTNFHARIL--AIGNPDKRNTPFHERFTDTEKFSSWNRFTIGAEDTPNFTGEKI 593 Query: 267 EG------------------IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR 308 + R V ++ G FP+ + F + I S Sbjct: 594 YEDPAKDEDVKKHLVQVSWAVEMRKSARPSVVAAKVDGNFPESDDTTFFDQSVINRGYST 653 Query: 309 EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQET 356 E + MG DI+ +G D++V G I +W+ E Sbjct: 654 EIEPESTDFKYMGVDISYQGEDQSVAYINHGGQIRIADEWNRFDGAEH 701 >gi|85058727|ref|YP_454429.1| phage terminase large subunit [Sodalis glossinidius str. 'morsitans'] gi|84779247|dbj|BAE74024.1| phage terminase large subunit [Sodalis glossinidius str. 'morsitans'] Length = 456 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 88/289 (30%), Gaps = 24/289 (8%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 P +K A GRG GK+ A +++ + R +C + + +++ ++ + Sbjct: 13 QPHRYKIA-KGGRGSGKSWAIARLLVEIA-RRGTYRFLCAREFQASMADSVIQLIADTIQ 70 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + FE+Q + + + + + Sbjct: 71 REGYLKEFEIQKAYIRYLATDSLFMFYGIKN-----------------NVTKIKSLEGID 113 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252 + +EA ++ + W+ N + + Y F PL+D Sbjct: 114 IAWVEEAEAVTKESWDILIPTIRKPGSE-IWVSF-NPKNILDDTYQRFVVNPLDDICLLT 171 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + + D D+ G+ I +I A+ Sbjct: 172 VHYTDNPHFPEVLRLEMEECKCKDYDLYLHIWEGEPVADSDLAIIKPLWIAAAVDAHITL 231 Query: 313 --DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359 + +G D+A EG D ++ G+++ H+ W+ + ++ Sbjct: 232 GFEPAGKKRIGFDVADEGEDSNALILSHGSVVMHLETWNKGDVIQSADR 280 >gi|268589862|ref|ZP_06124083.1| phage terminase, large subunit, PBSX family [Providencia rettgeri DSM 1131] gi|291314845|gb|EFE55298.1| phage terminase, large subunit, PBSX family [Providencia rettgeri DSM 1131] Length = 470 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 40/277 (14%), Positives = 85/277 (30%), Gaps = 24/277 (8%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 +K A GRG GK+ A +++ + R + I+C + + +++ + + Sbjct: 13 EAHRYKVA-KGGRGSGKSWAIARLLV-EAARRQPVRILCARELQNSISDSVIRLLEDTIE 70 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + + FE+Q + G AE + + + Sbjct: 71 REGYNNEFEIQRTMIKHLGTGAEFMFYGIKNNPT-----------------KIKSLEGVD 113 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252 + +EA ++ + N W+ N + + Y F P +D Sbjct: 114 VCWVEEAEAVTKESWDILIPTIRKPNSE-IWVSF-NPKNILDDTYQRFVVNPPDDICLLT 171 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI- 311 + + + + R LG+ I ++E A Sbjct: 172 ANYTDNPHFPDVLRLEMEECKRKNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKL 231 Query: 312 -DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347 +I D + GGD R G++++ I + Sbjct: 232 GWKAKGAIIATHDPSDVGGDAKGYAMRHGSVVKRISE 268 >gi|283956317|ref|ZP_06373797.1| terminase B protein, putative [Campylobacter jejuni subsp. jejuni 1336] gi|283792037|gb|EFC30826.1| terminase B protein, putative [Campylobacter jejuni subsp. jejuni 1336] Length = 430 Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 53/310 (17%), Positives = 99/310 (31%), Gaps = 36/310 (11%) Query: 63 DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN 122 V + F ++ GR +G T +A ++ + G +++ + + Sbjct: 9 YTPAQLKVFDDKNPRF-ITVAKGRRLGFTRGSAKFVIENLLL--GQNVLWV--------D 57 Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182 T+ A + + + P S + K I + Sbjct: 58 TIQANLQNYYELY------------FTPELKNLPKDFYSWSVQDKKLIINGAVLHMRSAE 105 Query: 183 TFVGPHNTHGMAVFNDEASGTPDI------INKSILGFFTELNPNRFWIMTSNTRRLNGW 236 V +EA +I + + + + Sbjct: 106 RSENIEGFGYDLVILNEAGIILKGSKGEYLWYNAIRPMLL--DNPKSRAIIGGVPKGKNL 163 Query: 237 FYDIFNIPLED--WKRYQIDTRTVEGIDSGFHEGIISRYG-LDSDVARIEILGQFPQQEV 293 FY++ L D WK +Q + + + +I G DS+V + EI G+F Sbjct: 164 FYELCRKELSDKNWKHFQFSSYDNPFLKEEQIKELIEEVGGEDSEVVKQEIYGEFIDSSS 223 Query: 294 NNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 IE AMS+ + + + I G D+A G DK+V+ R+G I++ I +S Sbjct: 224 AELFALTEIENAMSKNSFSIEKMQGENIWGLDVARYGDDKSVLAKRKGFIVDEIKKYSQL 283 Query: 352 LIQETNQEGC 361 E Sbjct: 284 GTMELANRIL 293 >gi|85059798|ref|YP_455500.1| phage terminase large subunit [Sodalis glossinidius str. 'morsitans'] gi|84780318|dbj|BAE75095.1| phage terminase large subunit [Sodalis glossinidius str. 'morsitans'] Length = 483 Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 39/289 (13%), Positives = 88/289 (30%), Gaps = 24/289 (8%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 P +K A GRG GK+ A +++ + R +C + + +++ ++ + Sbjct: 13 QPHRYKIA-KGGRGSGKSWAIARLLVEIA-RRGTYRFLCAREFQASMADSVIQLIADTIQ 70 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + FE+Q + + + + + Sbjct: 71 REGYLKEFEIQKAYIRHLATDSLFMFYGIKN-----------------NVTKIKSLEGID 113 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252 + +EA ++ + W+ N + + Y F PL+D Sbjct: 114 IAWVEEAEAVTKESWDILIPTIRKPGSE-IWVSF-NPKNILDDTYQRFVVNPLDDICLLT 171 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + + D D+ G+ I +I A+ Sbjct: 172 VHYTDNPHFPEVLRLEMEECKCKDYDLYLHIWEGEPVADSDLAIIKPLWIAAAVDAHMTL 231 Query: 313 --DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359 D +G D+A EG D + F +G+++ + +W + ++ Sbjct: 232 GFDAVGEKRLGFDVADEGEDCNALCFVQGSVVLDLDEWHRGDVIASSNR 280 >gi|309379923|emb|CBX21334.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 449 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 43/280 (15%), Positives = 90/280 (32%), Gaps = 23/280 (8%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GRG GK+ A + + +S R G I+C + L ++++ + + + L + F++ Sbjct: 20 GGRGSGKSYFLAELAV-EVSRRIGTVILCAREFQGSLDDSVYQLLIETIERLGYTEEFDI 78 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 ++ + + +EA Sbjct: 79 LKSTI---------------THKGTGAKFVFYGIKNNVTKIKSIQGVGV--CWVEEAEAV 121 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRYQIDTRTVEGI- 261 ++ W+ N + + Y F P +D + + Sbjct: 122 TKNSWDVLIPSIRGDKNAEIWVSF-NPKNILDDTYRRFIVHPPQDSIVLKANYDINPHFA 180 Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLI 319 D+ ++ D D+ R LG+ I ++IE A+ I Sbjct: 181 DTPLLADMLECKERDEDLYRHIWLGEPVADSELAIIKPSWIEAAIDAHEKLGFQAAGKRI 240 Query: 320 MGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359 +G D+A EG D V R G+++ + W + + + + Sbjct: 241 LGFDVADEGDDANATVLRHGSVVTDMRQWRGQDVIYSADK 280 >gi|154175204|ref|YP_001409090.1| Ppx/GppA family phosphatase [Campylobacter curvus 525.92] gi|112803006|gb|EAU00350.1| phosphatase, Ppx/GppA family [Campylobacter curvus 525.92] Length = 433 Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 57/314 (18%), Positives = 97/314 (30%), Gaps = 42/314 (13%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 WQ E I GR G T A + + G I+ Sbjct: 11 TDWQREVF-------------FKNKAKFTTIEKGRRSGFTKGMANACIEWLI--EGKKIL 55 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + L+ L LP W + Q + + Sbjct: 56 WVDTVTANLQRYFERYFVPELKQLPADMW---------------KFHAQDKKLTVGEGYL 100 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGT---PDIINKSILGFFTELNPNRFWIMTS 228 R+ + V +EA + + +I + PN + Sbjct: 101 DMRSA-----ERPENIEGFGYDVVILNEAGIILKNSYLWDNAIRPMLLD-YPNSRAFIGG 154 Query: 229 NTRRLNGWFYDIFNIPLE--DWKRYQIDTRTVEGIDSGFHEGIISRYGL-DSDVARIEIL 285 + N +F DW +QI + + + +I+ G DSDV + EI Sbjct: 155 VPKGKNRFFDLASRGMRNEKDWVNFQISSFENPLLRKEEIDELIAELGGVDSDVVKQEIY 214 Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHI 345 G+F N P + IE A + + A I G D+A +G D++V+ R G ++++ Sbjct: 215 GEFLDTTTNALFPLSQIEAAFGKVRAYEPNAVQIWGLDVARDGDDESVLCVREGYHVKNL 274 Query: 346 FDWSAKLIQETNQE 359 + E +E Sbjct: 275 EGFRIASTTELARE 288 >gi|331035425|gb|AEC52982.1| large terminase protein [Synechococcus phage S-CRM01] Length = 567 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 45/377 (11%), Positives = 101/377 (26%), Gaps = 72/377 (19%) Query: 10 KLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSN 69 ++++ E++ +C + F+ + IK L+H P + Sbjct: 21 YTKEQIAELI---KCSQDPEYFLENY----IKIISLDHGIIPFK--------PYNFQRKL 65 Query: 70 VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129 VN+ + F R GK+T ++ R ++I +AN + Sbjct: 66 VNSFHDNRF-TICKLPRQCGKSTTVTAYLIHQAIFRDNINIAILANKRETAYELM----- 119 Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189 + ++L + S+ +++ T Sbjct: 120 -------AKLQLSYENLPKWMQQGVLGWNKGSIELENGSRITASSTS-------SSAVRG 165 Query: 190 THGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP- 244 V DE + P D S+ + ++ +T FY ++ Sbjct: 166 FAYNIVMLDEFAFVPTNVADDFFSSVYPTISSG--KSTKVIIVSTPCGMNHFYKMWTDAT 223 Query: 245 --LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIP---- 298 + + V G D F + I+ L + E F P Sbjct: 224 KGRNSYNPIEAHWSEVPGRDEKFKQETIANTSLSQ--WQQEFETDFIGSVGTLINPAKLK 281 Query: 299 -------------HNYIEEAM--SREAIDDLYAPLIMGCDIAGEGG-DKTVVVFRRGNII 342 + E + + ++ D++ D + ++ Sbjct: 282 SLVYDEPLLSSGGLDVYEHPIMKDENDENSRDHEYMITVDVSRGMKLDYSAF------LV 335 Query: 343 EHIFDWSAKLIQETNQE 359 I + +L+ + Sbjct: 336 FDITQYPHRLVAKYRNN 352 >gi|237704849|ref|ZP_04535330.1| terminase large subunit [Escherichia sp. 3_2_53FAA] gi|226901215|gb|EEH87474.1| terminase large subunit [Escherichia sp. 3_2_53FAA] gi|315288241|gb|EFU47640.1| phage terminase, large subunit, PBSX family [Escherichia coli MS 110-3] Length = 471 Score = 123 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 37/277 (13%), Positives = 83/277 (29%), Gaps = 24/277 (8%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 +K A GRG GK+ A +++ + R + I+C + + +++ + + Sbjct: 13 EAHRYKVA-KGGRGSGKSWAIARLLV-EAARRQPVRILCARELQNSISDSVIRLLEDTIE 70 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + FE+Q + G AE + + + Sbjct: 71 REGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPT-----------------KIKSLEGID 113 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252 + +EA ++ + W+ N + + Y F P +D Sbjct: 114 ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNPPDDICLLT 171 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI- 311 ++ + + + R LG+ I ++E A Sbjct: 172 VNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKL 231 Query: 312 -DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347 ++ D + G D R G++++ I + Sbjct: 232 GWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAE 268 >gi|260868683|ref|YP_003235085.1| putative terminase large subunit [Escherichia coli O111:H- str. 11128] gi|293446697|ref|ZP_06663119.1| phage terminase large subunit [Escherichia coli B088] gi|257765039|dbj|BAI36534.1| putative terminase large subunit [Escherichia coli O111:H- str. 11128] gi|291323527|gb|EFE62955.1| phage terminase large subunit [Escherichia coli B088] gi|323177130|gb|EFZ62720.1| phage terminase, large subunit, PBSX family [Escherichia coli 1180] Length = 471 Score = 123 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 37/277 (13%), Positives = 83/277 (29%), Gaps = 24/277 (8%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 +K A GRG GK+ A +++ + R + I+C + + +++ + + Sbjct: 13 EAHRYKVA-KGGRGSGKSWAIARLLV-EAARRQPVRILCARELQNSISDSVIRLLEDTIE 70 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + FE+Q + G AE + + + Sbjct: 71 REGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPT-----------------KIKSLEGID 113 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252 + +EA ++ + W+ N + + Y F P +D Sbjct: 114 ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNPPDDICLLT 171 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI- 311 ++ + + + R LG+ I ++E A Sbjct: 172 VNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKL 231 Query: 312 -DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347 ++ D + G D R G++++ I + Sbjct: 232 GWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAE 268 >gi|157159763|ref|YP_001457081.1| PBSX family phage terminase large subunit [Escherichia coli HS] gi|300935792|ref|ZP_07150755.1| phage terminase, large subunit, PBSX family [Escherichia coli MS 21-1] gi|157065443|gb|ABV04698.1| phage terminase, large subunit, pbsx family [Escherichia coli HS] gi|300459025|gb|EFK22518.1| phage terminase, large subunit, PBSX family [Escherichia coli MS 21-1] Length = 471 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 37/277 (13%), Positives = 83/277 (29%), Gaps = 24/277 (8%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 +K A GRG GK+ A +++ + R + I+C + + +++ + + Sbjct: 13 EAHRYKVA-KGGRGSGKSWAIARLLV-EAARRQPVRILCARELQNSISDSVIRLLEDTIE 70 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + FE+Q + G AE + + + Sbjct: 71 REGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPT-----------------KIKSLEGID 113 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252 + +EA ++ + W+ N + + Y F P +D Sbjct: 114 ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNPPDDICLLT 171 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI- 311 ++ + + + R LG+ I ++E A Sbjct: 172 VNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKL 231 Query: 312 -DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347 ++ D + G D R G++++ I + Sbjct: 232 GWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAE 268 >gi|324019922|gb|EGB89141.1| phage terminase, large subunit, PBSX family [Escherichia coli MS 117-3] Length = 471 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 37/277 (13%), Positives = 83/277 (29%), Gaps = 24/277 (8%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 +K A GRG GK+ A +++ + R + I+C + + +++ + + Sbjct: 13 EAHRYKVA-KGGRGSGKSWAIARLLV-EAARRQPVRILCARELQNSISDSVIRLLEDTIE 70 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + FE+Q + G AE + + + Sbjct: 71 REGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPT-----------------KIKSLEGID 113 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252 + +EA ++ + W+ N + + Y F P +D Sbjct: 114 ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNPPDDICLLT 171 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI- 311 ++ + + + R LG+ I ++E A Sbjct: 172 VNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKL 231 Query: 312 -DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347 ++ D + G D R G++++ I + Sbjct: 232 GWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKCIAE 268 >gi|320103661|ref|YP_004179252.1| hypothetical protein Isop_2123 [Isosphaera pallida ATCC 43644] gi|319750943|gb|ADV62703.1| hypothetical protein Isop_2123 [Isosphaera pallida ATCC 43644] Length = 553 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 65/368 (17%), Positives = 120/368 (32%), Gaps = 46/368 (12%) Query: 5 ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64 + +++ + L LM E +R G +P W+ Sbjct: 1 MRKEKEEIRTLATPLMVEESTAGMVARALRCLADDPVGFNRLALGRPDYWEG-------- 52 Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124 + ++ G +GK+ L A + LW + T PG ++ A S+ L L Sbjct: 53 --QRRAALALTRARSVVVATGNAVGKSYLAAGLTLWWLYTHPGSLVVATAPSQGLLGTVL 110 Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSG-WYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 + E+ K L+ R + G ++ + + ++ + + Sbjct: 111 FRELQKALAASRRRGLGLPGMVVGSDRGTPFSLRVGPGRRLAAEGWGCLGIATRG--VER 168 Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243 G H+ M V DEASG +++ R + N F+ + Sbjct: 169 LAGRHHADLM-VVVDEASGVQPEAWEALTSL-----NPRKLFVCGNPLTPGTVFHKLHQR 222 Query: 244 PLE-----------DWKRYQIDTRTVEGIDSG----------FHEGIISRYGLDSDVARI 282 L I + I+ F ++G S + Sbjct: 223 GLTEASDPSIPDHARGVALTIPSTASPDINLERSPRGLADRGFIREAERQWGRGSPLWLS 282 Query: 283 EILGQFPQQEVNNFIPHNYIEEAMSRE----AIDDLYAPLIMGCDI-AGEGGDKTVVVFR 337 + G FP V+ I ++++A S E + P ++GCD+ AG G D+T +V R Sbjct: 283 HVEGVFPTVAVHALIEPGWLDQAASLERSQTYENPPGQP-VLGCDLAAGVGADRTAIVVR 341 Query: 338 RGNIIEHI 345 I + Sbjct: 342 DEGGIREL 349 >gi|315929403|gb|EFV08605.1| phosphatase, Ppx/GppA family [Campylobacter jejuni subsp. jejuni 305] Length = 430 Score = 122 bits (305), Expect = 8e-26, Method: Composition-based stats. Identities = 51/310 (16%), Positives = 98/310 (31%), Gaps = 36/310 (11%) Query: 63 DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN 122 V + F ++ GR +G T +A ++ + G +++ + + Sbjct: 9 YTPAQLKVFDDKNPRF-ITVAKGRRLGFTRGSAKFVIENLLL--GQNVLWV--------D 57 Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182 T+ A + + + P S + K I + Sbjct: 58 TIQANLQNYYELY------------FTPELKNLPKDFYSWSVQDKKLIINGAVLHMRSAE 105 Query: 183 TFVGPHNTHGMAVFNDEASGTPDI------INKSILGFFTELNPNRFWIMTSNTRRLNGW 236 V +EA +I + + + + Sbjct: 106 RSENIEGFGYDLVILNEAGIILKGSKGEYLWYNAIRPMLL--DNPKSRAIIGGVPKGKNL 163 Query: 237 FYDIFNIPLED--WKRYQIDTRTVEGIDSGFHEGIISRYG-LDSDVARIEILGQFPQQEV 293 FY++ L D WK +Q + + + +I G S+V + EI G+F Sbjct: 164 FYELCRKELSDKNWKHFQFSSYDNPFLKEEQIKELIEEVGGEGSEVVKQEIYGEFIDSSS 223 Query: 294 NNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 + IE AMS+ + + + I G D+A G DK+ + R+G +I I +S Sbjct: 224 AELFSLSEIENAMSKNSFSIEKMQGENIWGLDVARYGDDKSALAKRKGFVIYEIKKYSQL 283 Query: 352 LIQETNQEGC 361 E + Sbjct: 284 GTIELANKIL 293 >gi|57237579|ref|YP_178593.1| terminase B protein, putative [Campylobacter jejuni RM1221] gi|57166383|gb|AAW35162.1| terminase B protein, putative [Campylobacter jejuni RM1221] Length = 430 Score = 122 bits (305), Expect = 8e-26, Method: Composition-based stats. Identities = 51/310 (16%), Positives = 98/310 (31%), Gaps = 36/310 (11%) Query: 63 DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN 122 V + F ++ GR +G T +A ++ + G +++ + + Sbjct: 9 YTPAQLKVFDDKNPRF-ITVAKGRRLGFTRGSAKFVIENLLL--GQNVLWV--------D 57 Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182 T+ A + + + P S + K I + Sbjct: 58 TIQANLQNYYELY------------FTPELKNLPKDFYSWSVQDKKLIINGAVLHMRSAE 105 Query: 183 TFVGPHNTHGMAVFNDEASGTPDI------INKSILGFFTELNPNRFWIMTSNTRRLNGW 236 V +EA +I + + + + Sbjct: 106 RSENIEGFGYDLVILNEAGIILKGSKGEYLWYNAIRPMLL--DNPKSRAIIGGVPKGKNL 163 Query: 237 FYDIFNIPLED--WKRYQIDTRTVEGIDSGFHEGIISRYG-LDSDVARIEILGQFPQQEV 293 FY++ L D WK +Q + + + +I G S+V + EI G+F Sbjct: 164 FYELCRKELSDKNWKHFQFSSYDNPFLKEEQIKELIEEVGGEGSEVVKQEIYGEFIDSSS 223 Query: 294 NNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 + IE AMS+ + + + I G D+A G DK+ + R+G +I I +S Sbjct: 224 AELFSLSEIENAMSKNSFSIEKMQGENIWGLDVARYGDDKSALAKRKGFVIYEIKKYSQL 283 Query: 352 LIQETNQEGC 361 E + Sbjct: 284 GTIELANKIL 293 >gi|310005828|gb|ADP00213.1| DNA maturase beta subunit [Cyanophage Syn26] Length = 577 Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats. Identities = 52/371 (14%), Positives = 87/371 (23%), Gaps = 81/371 (21%) Query: 27 SFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR 86 FK F+ W P P R Q A+ + S + I A R Sbjct: 11 DFKLFLQAL--WDQLDLP-----SPTRAQ----YAIADYLQSGPK-------RLQIQAFR 52 Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G+GK+ + +LW + I+ I+ S+ + N + +H Sbjct: 53 GVGKSWITGAFVLWTLFNNAEKKIMIISASKERADNMSIFLQKLIIETPWLKHLRPKSDD 112 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCR----------TYSEERPDTFVGPHNTHGMAVF 196 + + L K IT + E P + + Sbjct: 113 ARWSRISFDVLCSPHQAPSVKSVGITGQMTGSRADLMILDDIEVPGNSMTELMREKLLQL 172 Query: 197 NDEASGT--------------PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242 EA P W + + + I Sbjct: 173 CTEAESILTPKDDSRIMYLGTPQTTFTVYRKLAERNYRPFVWPARF-PKNITPYEGLIAP 231 Query: 243 IPLEDWKRYQID--TRTVEGIDSGFHEGIISRYGLDSDVARIE----------------- 283 ED + + D S G + + + Sbjct: 232 QLQEDIDNGAQPGESTDPDRFDDEDLLQRESSMGRSNFMLQFMLDTSLSDAEKFPLKMAD 291 Query: 284 --ILGQFPQQEVNNFI-----------------PHNYIEEAMSREAIDDLYAPLIMGCDI 324 + P + +N I P +Y M + Y I D Sbjct: 292 LVVTSVNPTEAPDNVIWCSDPRNVIKDLPTVGLPGDYFYSPMQLQGEWTPYQETICSVDP 351 Query: 325 AGEGGDKTVVV 335 +G G D+T Sbjct: 352 SGRGSDETAAC 362 >gi|294492319|gb|ADE91075.1| phage terminase, large subunit, PBSX family [Escherichia coli IHE3034] Length = 471 Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats. Identities = 37/277 (13%), Positives = 83/277 (29%), Gaps = 24/277 (8%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 +K A GRG GK+ A +++ + R + I+C + + +++ + + Sbjct: 13 EAHRYKVA-KGGRGSGKSWAIARLLV-EAARRQPVRILCARELQNSISDSVIRLLEDTIE 70 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + FE+Q + G AE + + + Sbjct: 71 REGYTAEFEIQRSMIRHLGTNAEFMFYGIKNNPT-----------------KIKSLEGID 113 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252 + +EA ++ + W+ N + + Y F P +D Sbjct: 114 ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNPPDDICLLT 171 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI- 311 ++ + + + R LG+ I ++E A Sbjct: 172 VNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKL 231 Query: 312 -DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347 ++ D + G D R G++++ I + Sbjct: 232 GWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAE 268 >gi|222032743|emb|CAP75482.1| Terminase large subunit [Escherichia coli LF82] Length = 470 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 37/277 (13%), Positives = 83/277 (29%), Gaps = 24/277 (8%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 +K A GRG GK+ A +++ + R + I+C + + +++ + + Sbjct: 13 EAHRYKVA-KGGRGSGKSWAIARLLV-EAARRQPVRILCARELQNSISDSVIRLLEDTIE 70 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + FE+Q + G AE + + + Sbjct: 71 REGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPT-----------------KIKSLEGID 113 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252 + +EA ++ + W+ N + + Y F P +D Sbjct: 114 ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNPPDDICLLT 171 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI- 311 ++ + + + R LG+ I ++E A Sbjct: 172 VNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKL 231 Query: 312 -DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347 ++ D + G D R G++++ I + Sbjct: 232 GWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAE 268 >gi|91211665|ref|YP_541651.1| terminase large subunit [Escherichia coli UTI89] gi|117624554|ref|YP_853467.1| phage terminase large subunit [Escherichia coli APEC O1] gi|218559279|ref|YP_002392192.1| Terminase large subunit [Escherichia coli S88] gi|91073239|gb|ABE08120.1| terminase large subunit [Escherichia coli UTI89] gi|115513678|gb|ABJ01753.1| phage terminase large subunit [Escherichia coli APEC O1] gi|148566126|gb|ABQ88401.1| phage terminase large subunit [Enterobacteria phage CUS-3] gi|218366048|emb|CAR03793.1| Terminase large subunit [Escherichia coli S88] gi|307626097|gb|ADN70401.1| terminase large subunit [Escherichia coli UM146] gi|323948780|gb|EGB44679.1| phage terminase large subunit [Escherichia coli H252] Length = 471 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 37/277 (13%), Positives = 83/277 (29%), Gaps = 24/277 (8%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 +K A GRG GK+ A +++ + R + I+C + + +++ + + Sbjct: 13 EAHRYKVA-KGGRGSGKSWAIARLLV-EAARRQPVRILCARELQNSISDSVIRLLEDTIE 70 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + FE+Q + G AE + + + Sbjct: 71 REGYTAEFEIQRSMIRHLGTNAEFMFYGIKNNPT-----------------KIKSLEGID 113 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252 + +EA ++ + W+ N + + Y F P +D Sbjct: 114 ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNPPDDICLLT 171 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI- 311 ++ + + + R LG+ I ++E A Sbjct: 172 VNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKL 231 Query: 312 -DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347 ++ D + G D R G++++ I + Sbjct: 232 GWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAE 268 >gi|13559866|ref|NP_112076.1| terminase large subunit [Enterobacteria phage HK620] gi|13517602|gb|AAK28891.1|AF335538_43 terminase large subunit [Salmonella phage HK620] Length = 470 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 37/277 (13%), Positives = 83/277 (29%), Gaps = 24/277 (8%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 +K A GRG GK+ A +++ + R + I+C + + +++ + + Sbjct: 13 EAHRYKVA-KGGRGSGKSWAIARLLV-EAARRQPVRILCARELQNSISDSVIRLLEDTIE 70 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + FE+Q + G AE + + + Sbjct: 71 REGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPT-----------------KIKSLEGID 113 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252 + +EA ++ + W+ N + + Y F P +D Sbjct: 114 ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNPPDDICLLT 171 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI- 311 ++ + + + R LG+ I ++E A Sbjct: 172 VNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKL 231 Query: 312 -DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347 ++ D + G D R G++++ I + Sbjct: 232 GWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAE 268 >gi|325497784|gb|EGC95643.1| gene 2 protein [Escherichia fergusonii ECD227] Length = 470 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 37/277 (13%), Positives = 83/277 (29%), Gaps = 24/277 (8%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 +K A GRG GK+ A +++ + R + I+C + + +++ + + Sbjct: 13 EAHRYKVA-KGGRGSGKSWAIARLLV-EAARRQPVRILCARELQNSISDSVIRLLEDTIE 70 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + FE+Q + G AE + + + Sbjct: 71 REGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPT-----------------KIKSLEGID 113 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252 + +EA ++ + W+ N + + Y F P +D Sbjct: 114 ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNPPDDICLLT 171 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI- 311 ++ + + + R LG+ I ++E A Sbjct: 172 VNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKL 231 Query: 312 -DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347 ++ D + G D R G++++ I + Sbjct: 232 GWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAE 268 >gi|300897414|ref|ZP_07115839.1| phage terminase, large subunit, PBSX family [Escherichia coli MS 198-1] gi|300358826|gb|EFJ74696.1| phage terminase, large subunit, PBSX family [Escherichia coli MS 198-1] Length = 470 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 37/277 (13%), Positives = 83/277 (29%), Gaps = 24/277 (8%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 +K A GRG GK+ A +++ + R + I+C + + +++ + + Sbjct: 13 EAHRYKVA-KGGRGSGKSWAIARLLV-EAARRQPVRILCARELQNSISDSVIRLLEDTIE 70 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + FE+Q + G AE + + + Sbjct: 71 REGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPT-----------------KIKSLEGID 113 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252 + +EA ++ + W+ N + + Y F P +D Sbjct: 114 ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNPPDDICLLT 171 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI- 311 ++ + + + R LG+ I ++E A Sbjct: 172 VNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKL 231 Query: 312 -DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347 ++ D + G D R G++++ I + Sbjct: 232 GWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAE 268 >gi|41057280|ref|NP_958178.1| gene 2 protein [Enterobacteria phage Sf6] gi|191165541|ref|ZP_03027382.1| phage terminase, large subunit, pbsx family [Escherichia coli B7A] gi|218695968|ref|YP_002403635.1| Terminase large subunit [Escherichia coli 55989] gi|331678314|ref|ZP_08378989.1| phage terminase, large subunit, PBSX family [Escherichia coli H591] gi|33334159|gb|AAQ12192.1| gene 2 protein [Shigella phage Sf6] gi|190904464|gb|EDV64172.1| phage terminase, large subunit, pbsx family [Escherichia coli B7A] gi|218352700|emb|CAU98482.1| Terminase large subunit [Escherichia coli 55989] gi|324114096|gb|EGC08069.1| phage terminase large subunit [Escherichia fergusonii B253] gi|331074774|gb|EGI46094.1| phage terminase, large subunit, PBSX family [Escherichia coli H591] Length = 470 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 37/277 (13%), Positives = 83/277 (29%), Gaps = 24/277 (8%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 +K A GRG GK+ A +++ + R + I+C + + +++ + + Sbjct: 13 EAHRYKVA-KGGRGSGKSWAIARLLV-EAARRQPVRILCARELQNSISDSVIRLLEDTIE 70 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + FE+Q + G AE + + + Sbjct: 71 REGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPT-----------------KIKSLEGID 113 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252 + +EA ++ + W+ N + + Y F P +D Sbjct: 114 ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNPPDDICLLT 171 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI- 311 ++ + + + R LG+ I ++E A Sbjct: 172 VNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKL 231 Query: 312 -DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347 ++ D + G D R G++++ I + Sbjct: 232 GWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAE 268 >gi|260856407|ref|YP_003230298.1| putative terminase large subunit [Escherichia coli O26:H11 str. 11368] gi|257755056|dbj|BAI26558.1| putative terminase large subunit [Escherichia coli O26:H11 str. 11368] Length = 470 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 37/277 (13%), Positives = 84/277 (30%), Gaps = 24/277 (8%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 +K A GRG GK+ A +++ + R + I+C + + +++ + + Sbjct: 13 EAHRYKVA-KGGRGSGKSWAIARLLV-EAARRQPVRILCARELQNSISDSVIRLLEDTIE 70 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + FE+Q + G AE + + + Sbjct: 71 REGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPT-----------------KIKSLEGID 113 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252 + +EA ++ + W+ N + + Y F P +D Sbjct: 114 ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNPPDDICLLT 171 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS--REA 310 ++ + + + R LG+ I ++E A + Sbjct: 172 VNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHTKL 231 Query: 311 IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347 ++ D + G D R G++++ I + Sbjct: 232 GWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAE 268 >gi|323936486|gb|EGB32774.1| phage terminase large [Escherichia coli E1520] Length = 470 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 37/277 (13%), Positives = 83/277 (29%), Gaps = 24/277 (8%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 +K A GRG GK+ A +++ + R + I+C + + +++ + + Sbjct: 13 EAHRYKVA-KGGRGSGKSWAIARLLV-EAARRQPVRILCARELQNSISDSVIRLLEDTIE 70 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + FE+Q + G AE + + + Sbjct: 71 REGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPT-----------------KIKSLEGID 113 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252 + +EA ++ + W+ N + + Y F P +D Sbjct: 114 ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNPPDDICLLT 171 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI- 311 ++ + + + R LG+ I ++E A Sbjct: 172 VNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKL 231 Query: 312 -DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347 ++ D + G D R G++++ I + Sbjct: 232 GWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAE 268 >gi|168260952|ref|ZP_02682925.1| phage terminase, large subunit, pbsx family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205349913|gb|EDZ36544.1| phage terminase, large subunit, pbsx family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 471 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 37/277 (13%), Positives = 83/277 (29%), Gaps = 24/277 (8%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 +K A GRG GK+ A +++ + R + I+C + + +++ + + Sbjct: 13 EAHRYKVA-KGGRGSGKSWAIARLLV-EAARRQPVRILCARELQNSISDSVIRLLEDTIE 70 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + FE+Q + G AE + + + Sbjct: 71 REGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPT-----------------KIKSLEGID 113 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252 + +EA ++ + W+ N + + Y F P +D Sbjct: 114 ICWVEEAEAVTKESWDILIPTIRKTFSE-IWVSF-NPKNILDDTYQRFVVNPPDDICLLT 171 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI- 311 ++ + + + R LG+ I ++E A Sbjct: 172 VNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKL 231 Query: 312 -DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347 ++ D + G D R G++++ I + Sbjct: 232 GWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAE 268 >gi|310005737|gb|ADP00124.1| DNA maturase beta subunit [Cyanophage NATL1A-7] Length = 577 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 49/374 (13%), Positives = 86/374 (22%), Gaps = 81/374 (21%) Query: 24 CVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS 83 FK F+ W P P R Q ++ + + I Sbjct: 8 LKDDFKLFLQAL--WEELDLP-----SPTRAQ----YSIADYLQHGPK-------RLQIQ 49 Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 A RG+GK+ + +LW + P I+ I+ S+ + N + +H Sbjct: 50 AFRGVGKSWITGAFVLWTLFKDPEKKIMIISASKERADNMSIFLQKLIIETAWLKHLRPK 109 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY----------SEERPDTFVGPHNTHGM 193 S + L K IT + E P + + Sbjct: 110 SEDSRWSRISFDVLCSPHQAPSVKSVGITGQLTGSRADLMILDDIEVPGNSMTELMREKL 169 Query: 194 AVFNDEASGT--------------PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239 EA P W + L + Sbjct: 170 LQLCTEAESILTPKDDSRIMYLGTPQTTFTVYRKLAERAYRPFVWPARY-PKSLANYEGL 228 Query: 240 IFNIPLEDWK--RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE-------------- 283 I ED + + + G + + + Sbjct: 229 IAPQLQEDIDIGAEAGACTDPDRFNDDDLIEREASMGRSNFMLQFMLDTSLSDAEKFPLK 288 Query: 284 -----ILGQFPQQEVNNFI-----------------PHNYIEEAMSREAIDDLYAPLIMG 321 + P + ++ + P +Y M + Y I Sbjct: 289 MADLVVTSVNPYEAPDSVVWCSDPRNVIKELPTVGLPGDYFYSPMQLQGEWSKYTETICS 348 Query: 322 CDIAGEGGDKTVVV 335 D +G G D+T Sbjct: 349 VDPSGRGSDETAAA 362 >gi|298381518|ref|ZP_06991117.1| phage terminase large subunit [Escherichia coli FVEC1302] gi|298278960|gb|EFI20474.1| phage terminase large subunit [Escherichia coli FVEC1302] Length = 470 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 36/277 (12%), Positives = 82/277 (29%), Gaps = 24/277 (8%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 +K A GRG GK+ A +++ + R + I+C + + +++ + + Sbjct: 13 EAHRYKVA-KGGRGSGKSWAIARLLV-EAARRQPVRILCARELQNSISDSVIRLLEDTIE 70 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + FE+Q + G AE + + + Sbjct: 71 REGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPT-----------------KIKSLEGID 113 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252 + +EA ++ + W+ N + + Y F P +D Sbjct: 114 ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNPPDDICLLT 171 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI- 311 ++ + + + R LG+ ++E A Sbjct: 172 VNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIFKREWLEAATDAHKKL 231 Query: 312 -DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347 ++ D + G D R G++++ I + Sbjct: 232 GWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAE 268 >gi|168239626|ref|ZP_02664684.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197287704|gb|EDY27095.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 470 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 37/277 (13%), Positives = 83/277 (29%), Gaps = 24/277 (8%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 +K A GRG GK+ A +++ + R + I+C + + +++ + + Sbjct: 13 EAHRYKVA-KGGRGSGKSWAIARLLV-EAARRQPVRILCARELQNSISDSVIRLLEDTIE 70 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + FE+Q + G AE + + + Sbjct: 71 REGYAAEFEIQRSMIRHLGTNAEFMFYGIKNNPT-----------------KIKSLEGID 113 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252 + +EA ++ + W+ N + + Y F P +D Sbjct: 114 ICWVEEAEAVTKESWDILVPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNPPDDICLLT 171 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI- 311 ++ + + + R LG+ I ++E A Sbjct: 172 VNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKL 231 Query: 312 -DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347 ++ D + G D R G++++ I + Sbjct: 232 GWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAE 268 >gi|294663744|gb|ADF29298.1| terminase [Pseudomonas phage JG024] Length = 460 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 81/278 (29%), Gaps = 24/278 (8%) Query: 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136 +K I GR K+ + + ++ + +C + ++ +++ + + Sbjct: 17 RYKV-IYGGRASSKSHDAGGIAV-FLAANYKLKFLCARQFQNRISESVYTLIKDKIENSE 74 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 + F S+ +E + + ++ Sbjct: 75 YNGEFIFTKNSIKHKSTGSE-----------------FLFYGIARNLSEIKSTEGIDILW 117 Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDT 255 +EA + I + N + + N + + Y F P +D I+ Sbjct: 118 LEEAHYLTQEQWEVIEPTIRKENSEIW--IIFNPNEVTDFVYQNFVVKPPKDSCVKMINW 175 Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DD 313 + + I Y D + A G + I +I A+ + Sbjct: 176 NENPFLSETMLKVIHEAYERDREQAEHIYGGIPKTGGDKSVINLKFILAAIDAHKKLGWE 235 Query: 314 LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 +G D+A +G D GN+I + +W Sbjct: 236 PAGSKRIGFDVADDGDDANATTLMHGNVIMEVDEWDGL 273 >gi|315122636|ref|YP_004063125.1| putative phage terminase, large subunit [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496038|gb|ADR52637.1| putative phage terminase, large subunit [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 301 Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 4/152 (2%) Query: 10 KLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSN 69 + + L + ++ + F + WG +G PL + P WQ E + N Sbjct: 10 EYDTALLQNVLSPAIAGNPLAFTKYMYRWGEEGTPLANCKGPRAWQTEVFLELAEFIEKN 69 Query: 70 VNNS----NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW 125 +FK AI++ RGIGKT L AW+ W +STR G +++ ANS+ Q K T + Sbjct: 70 KEAKRLGKPLQVFKLAIASARGIGKTALVAWITYWFLSTRIGCTVVISANSDDQCKTTSF 129 Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 AE+ +W S+ + H+FE +G + Sbjct: 130 AEIRRWHSLAKNAHFFEANIAEALLAGGCSPW 161 >gi|153951273|ref|YP_001397540.1| putative terminase B protein [Campylobacter jejuni subsp. doylei 269.97] gi|153951467|ref|YP_001398214.1| putative terminase B protein [Campylobacter jejuni subsp. doylei 269.97] gi|152938719|gb|ABS43460.1| putative terminase B protein [Campylobacter jejuni subsp. doylei 269.97] gi|152938913|gb|ABS43654.1| putative terminase B protein [Campylobacter jejuni subsp. doylei 269.97] Length = 430 Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 51/293 (17%), Positives = 93/293 (31%), Gaps = 35/293 (11%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 ++ GR +G T ++ + G +++ + +T+ A + + + Sbjct: 25 ITVAKGRRLGFTRGCVKYVIENLI--EGKNVLWV--------DTIQANLQNYYELY---- 70 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 P S + K I + V +E Sbjct: 71 --------FTPELKNLPKDFYSWSVQDKKLIINGAVLHMRSAERSENIEGFAYDLVILNE 122 Query: 200 ASGTPDI------INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED--WKRY 251 A SI + + + + FY++ L D WK + Sbjct: 123 AGIILKDSKGGYLWYNSIRPMLL--DNPKSRAIIGGVPKGKNLFYELCRKELSDKNWKHF 180 Query: 252 QIDTRTVEGIDSGFHEGIISRYG-LDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310 Q + + + +I G SDV R EI G+F + IE AMS+ + Sbjct: 181 QFSSYDNPFLKEEQIKELIEEVGGESSDVVRQEIYGEFIDSSSAELFSLSGIENAMSKNS 240 Query: 311 IDDLY--APLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC 361 I G D+A G DK+V+ R+G +I+ + +S E + Sbjct: 241 FSTQKMQGENIWGLDVARYGDDKSVLAKRKGFVIDELKKYSQLGTIELANKIL 293 >gi|261381054|ref|ZP_05985627.1| phage terminase, large subunit, PBSX family [Neisseria subflava NJ9703] gi|284796087|gb|EFC51434.1| phage terminase, large subunit, PBSX family [Neisseria subflava NJ9703] Length = 450 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 41/282 (14%), Positives = 95/282 (33%), Gaps = 23/282 (8%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 ++ GRG K+ A +++ L I+C + + +++ + +S + + Sbjct: 20 SLRGGRGGMKSWAVATVLVELARKGR-FRIMCARELQNSISDSVISLLSDTIDRAGYTQE 78 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 +E+Q + +E L + + + +EA Sbjct: 79 YEVQRNRIIHLSTGSEFLFYGIKNNPTKIKSI-----------------EAIDICWIEEA 121 Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVE 259 D ++ + W+ N + + Y F P +D ++ Sbjct: 122 ENVSDESWNILIPTIRKAGSE-IWLTW-NPKNILDPTYQRFVVNPPDDMVDIVVNYTDNI 179 Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAP 317 + S D D+ R LG+ + I +I+ A+ + Sbjct: 180 YLPEVLRLEAESCKARDYDLYRHIWLGEPVADSELSVIKPKWIDAAIDSHIKLGFEATGQ 239 Query: 318 LIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359 I+G D+A EG D + + R G+++ + +W + + + + Sbjct: 240 RILGFDVADEGDDASATILRHGSVVIDMDEWRGQDVIYSADK 281 >gi|218148543|ref|YP_002364311.1| terminase, large subunit [Pseudomonas phage 14-1] gi|218059739|emb|CAU13815.1| terminase, large subunit [Pseudomonas phage 14-1] Length = 460 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 81/278 (29%), Gaps = 24/278 (8%) Query: 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136 +K I GR K+ + + ++ + +C + ++ +++ + + Sbjct: 17 RYKV-IYGGRASSKSHDAGGIAV-FLAANYKLKFLCARQFQNRISESVYTLIKDKIENSE 74 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 + F S+ +E + + ++ Sbjct: 75 YNGEFIFTKNSIKHKITGSE-----------------FLFYGIARNLSEIKSTEGIDILW 117 Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDT 255 +EA + I + N + + N + + Y F P +D I+ Sbjct: 118 LEEAHYLTQEQWEVIEPTIRKENSEIW--IIFNPNEVTDFVYQNFVVKPPKDSCVKMINW 175 Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DD 313 + + I Y D + A G + I +I A+ + Sbjct: 176 NENPFLSETMLKVIHEAYERDREQAEHIYGGIPKTGGDKSVINLKFILAAIDAHKKLGWE 235 Query: 314 LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 +G D+A +G D GN+I + +W Sbjct: 236 PAGSKRIGFDVADDGEDANATTLMHGNVIMEVDEWDGL 273 >gi|218457805|ref|YP_002418810.1| terminase, large subunit [Pseudomonas phage SN] gi|218379073|emb|CAT99652.1| terminase, large subunit [Pseudomonas phage SN] Length = 460 Score = 120 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 81/278 (29%), Gaps = 24/278 (8%) Query: 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136 +K I GR K+ + + ++ + +C + ++ +++ + + Sbjct: 17 RYKV-IYGGRASSKSHDAGGIAV-FLAANYKLKFLCARQFQNRISESVYTLIKDKIENSE 74 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 + F S+ +E + + ++ Sbjct: 75 YNGEFIFTKNSIKHKSTGSE-----------------FLFYGIARNLSEIKSTEGIDILW 117 Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDT 255 +EA + I + N + + N + + Y F P +D I+ Sbjct: 118 LEEAHYLTQEQWEVIEPTIRKENSEIW--IIFNPNEVTDFVYQNFVVKPPKDSCVKMINW 175 Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DD 313 + + I Y D + A G + I +I A+ + Sbjct: 176 NENPFLSETMLKVIHEAYERDREQAEHIYGGIPKTGGDKSVINLKFILAAIDAHKKLGWE 235 Query: 314 LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 +G D+A +G D GN+I + +W Sbjct: 236 PAGSKRIGFDVADDGEDANATTLMHGNVIMEVDEWDGL 273 >gi|197261421|ref|YP_002154236.1| putative terminase, large subunit [Pseudomonas phage LMA2] gi|197244511|emb|CAR31245.1| putative terminase, large subunit [Pseudomonas phage LMA2] Length = 460 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 37/278 (13%), Positives = 81/278 (29%), Gaps = 24/278 (8%) Query: 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136 +K I GR K+ + + ++ + +C + ++ +++ + + Sbjct: 17 RYKV-IYGGRASSKSHDAGGIAV-FLAANYKLKFLCARQFQNRISESVYTLIKDKIENSE 74 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 + F S+ +E + + ++ Sbjct: 75 YNGEFIFTKNSIKHKITGSE-----------------FLFYGIARNLSEIKSTEGIDILW 117 Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDT 255 +EA + I + N + + N + + Y F P +D I+ Sbjct: 118 LEEAHYLTQEQWEVIEPTIRKENSEIW--IIFNPNEVTDFVYQNFVVKPPKDSCVKMINW 175 Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DD 313 + + I Y D + A G + I +I A+ + Sbjct: 176 NENPFLSETMLKVIHEAYERDREQAEHIYGGIPKTGGDKSVINLKFILAAIDAHKKLGWE 235 Query: 314 LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 +G D+A +G D GNII + +W Sbjct: 236 PAGSKRIGFDVADDGEDANATTLMHGNIIMEVDEWDGL 273 >gi|227113418|ref|ZP_03827074.1| Terminase large subunit [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 472 Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 36/274 (13%), Positives = 81/274 (29%), Gaps = 24/274 (8%) Query: 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136 +K A GRG K+ A +++ + R + I+C + + +++ + + Sbjct: 16 RYKVA-KGGRGSSKSWSIARLIV-EAARRQSIRILCARELQNSISDSVIRLLEDTIEREG 73 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 + FE+Q + G AE + + + + Sbjct: 74 YTAEFEIQRSMIRHLGTNAEFMFYGIKNNPT-----------------KIKSLEGVDICW 116 Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDT 255 +EA ++ + W+ N + + Y F P +D ++ Sbjct: 117 VEEAEAVTKESWDILIPTIRKPGSE-IWVSF-NPKNILDDTYQRFVVTPPDDICLLTVNY 174 Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DD 313 + + + R LG+ I ++E A Sbjct: 175 TDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASEMAIIKREWLEAATDAHIKLGWK 234 Query: 314 LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347 ++ D + G D R G++++ I Sbjct: 235 AKGAIVAAHDPSDTGPDDKGYAMRHGSVVKRIAS 268 >gi|317152051|ref|YP_004120099.1| hypothetical protein Daes_0328 [Desulfovibrio aespoeensis Aspo-2] gi|316942302|gb|ADU61353.1| protein of unknown function DUF264 [Desulfovibrio aespoeensis Aspo-2] Length = 428 Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 40/293 (13%), Positives = 75/293 (25%), Gaps = 39/293 (13%) Query: 79 KCAISAG-RGIGKTTLNAWMMLWLI--STRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 + ++ R GKT L+ ++ ++R IA Q K +W E+ ++ + Sbjct: 21 RFSVLVCHRRFGKTVLSVNRLIRAARTTSRTDWRGAYIAPLYKQAKTVVWDELKRYCGLG 80 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 + L + + Sbjct: 81 LDGCTVKFNETELRAD------------------FDNGARIRLFGAENPDSLRGMYLDGA 122 Query: 196 FNDEASGTPDIIN-KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254 DE + P + + I ++ W M T R Y ++ D + Sbjct: 123 VFDEVAQMPHRVWTEVIRPALSD---RMGWAMFIGTPRGKNALYRLWQDARRDPDWFAAM 179 Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE---AMSREAI 311 R + E + + + E F + E + Sbjct: 180 YRASQTGIIEPGELAAAAREMSPEEYEQEFECSFTAAIRGAYFSALIGEADKGGRITKVP 239 Query: 312 DDLYAPLIMGCDIAGEGGDKTVVVF---RRGNIIEHIFDWSAKLIQETNQEGC 361 D P+ D+ D T + F R GN + E + EG Sbjct: 240 HDPSLPVHTAWDLGM--SDSTAIWFVQARPGNAFAIV------DYYEASGEGL 284 >gi|197261331|ref|YP_002154147.1| putative terminase, large subunit [Pseudomonas phage LBL3] gi|197244421|emb|CAR31156.1| putative terminase, large subunit [Pseudomonas phage LBL3] Length = 460 Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 81/278 (29%), Gaps = 24/278 (8%) Query: 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136 +K I GR K+ + + ++ + +C + ++ +++ + + Sbjct: 17 RYKV-IYGGRASSKSHDAGGIAV-YLAANYRLKFLCARQFQNRISESVYTLIKDKIENSE 74 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 + F S+ +E + + ++ Sbjct: 75 YNGEFIFTKNSIKHKRTGSE-----------------FLFYGIARNLSEIKSTEGIDILW 117 Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDT 255 +EA + I + N + + N + + Y F P +D I+ Sbjct: 118 LEEAHYLTQEQWEVIEPTIRKENSEIW--IIFNPNEVTDFVYQNFVVKPPKDSCVKMINW 175 Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DD 313 + + I Y D + A G + I +I A+ + Sbjct: 176 NENPFLSETMLKVIHEAYERDREQAEHIYGGIPKTGGDKSVINLKFILAAIDAHKKLGWE 235 Query: 314 LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 +G D+A +G D GN+I + +W Sbjct: 236 PAGSKRIGFDVADDGEDANATTLMHGNVIMEVDEWDGL 273 >gi|157265379|ref|YP_001467938.1| terminase large subunit [Thermus phage P23-45] gi|156905274|gb|ABU96918.1| terminase large subunit [Thermus phage P23-45] Length = 485 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 47/310 (15%), Positives = 90/310 (29%), Gaps = 35/310 (11%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 E + H ++ S + A GR GK+ + ++ + RPG IA + Sbjct: 12 ELLGYKPHHVQLAIHRSTAKR-RVACL-GRQSGKSEAASVEAVFELFARPGSQGWIIAPT 69 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 Q + V K + E+Q + + Sbjct: 70 YDQAEIIFGRVVEKVERLAEVFPATEVQLQRRRLRLLVHHYDRPV--NAPGAKRVATSEF 127 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNPNRFWIMTSNTRRLNG 235 + D V DEA+ P + ++I + + W + +T + Sbjct: 128 RGKSADRPDNLRGATLDFVILDEAAMIPFSVWSEAIEPTLSVRDG---WALIISTPKGLN 184 Query: 236 WFYDIF-----------------NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278 WFY+ F N D++ + + V + R + Sbjct: 185 WFYEFFLMGWRGGLKEGIPNSGVNQTHPDFESFHAASWDV--WPERREWYMERRLYIPDL 242 Query: 279 VARIEILGQFPQQEVNNFIPHNYI-----EEAMSREAIDD--LYAPLIMGCDIAGEGGDK 331 R E +F + F + + E +R ++D +G D G+ D Sbjct: 243 EFRQEYGAEFVSHSNSVFSGLDMLILLPYERRGTRLVVEDYRPDHIYCIGADF-GKNQDY 301 Query: 332 TVVVFRRGNI 341 +V + Sbjct: 302 SVFSVLDLDT 311 >gi|157265496|ref|YP_001468054.1| phage terminase large subunit [Thermus phage P74-26] gi|156905391|gb|ABU97034.1| phage terminase large subunit [Thermus phage P74-26] Length = 485 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 47/310 (15%), Positives = 90/310 (29%), Gaps = 35/310 (11%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 E + H ++ S + A GR GK+ + ++ + RPG IA + Sbjct: 12 ELLGYKPHHVQLAIHRSTAKR-RVACL-GRQSGKSEAASVEAVFELFARPGSQGWIIAPT 69 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 Q + V K + E+Q + + Sbjct: 70 YDQAEIIFGRVVEKVERLAEVFPATEVQLQRRRLRLLVHHYDRPV--NAPGAKRVATSEF 127 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNPNRFWIMTSNTRRLNG 235 + D V DEA+ P + ++I + + W + +T + Sbjct: 128 RGKSADRPDNLRGATLDFVILDEAAMIPFSVWSEAIEPTLSVRDG---WALIISTPKGLN 184 Query: 236 WFYDIF-----------------NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278 WFY+ F N D++ + + V + R + Sbjct: 185 WFYEFFLMGWRGGLKEGIPNSGINQTHPDFESFHAASWDV--WPERREWYMERRLYIPDL 242 Query: 279 VARIEILGQFPQQEVNNFIPHNYI-----EEAMSREAIDD--LYAPLIMGCDIAGEGGDK 331 R E +F + F + + E +R ++D +G D G+ D Sbjct: 243 EFRQEYGAEFVSHSNSVFSGLDMLILLPYERRGTRLVVEDYRPDHIYCIGADF-GKNQDY 301 Query: 332 TVVVFRRGNI 341 +V + Sbjct: 302 SVFSVLDLDT 311 >gi|149408318|ref|YP_001294421.1| conserved hypothetical protein ORF004 [Pseudomonas phage F8] gi|219523873|ref|YP_002455934.1| terminase large subunit [Pseudomonas phage PB1] gi|190333469|gb|ACE73724.1| terminase large subunit [Pseudomonas phage PB1] Length = 460 Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 37/278 (13%), Positives = 81/278 (29%), Gaps = 24/278 (8%) Query: 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136 +K I GR K+ + + ++ + +C + ++ +++ + + Sbjct: 17 RYKV-IYGGRASSKSHDAGGIAV-YLAANYRLKFLCARQFQNRISESVYTLIKDKIENSE 74 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 + F S+ +E + + ++ Sbjct: 75 YNGEFIFTKNSIKHKRTGSE-----------------FLFYGIARNLSEIKSTEGIDILW 117 Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDT 255 +EA + I + N + + N + + Y F P +D I+ Sbjct: 118 LEEAHYLTQEQWEVIEPTIRKENSEIW--IIFNPNEVTDFVYQNFVVKPPKDAFVKMINW 175 Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DD 313 + + I Y D D A G + I +I A+ + Sbjct: 176 NENPFLSETMLKVIHEAYERDKDQAEHIYGGIPKTGGDKSVINLKFILAAIDAHKKLGWE 235 Query: 314 LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 +G D+A +G D GN+I + +W Sbjct: 236 PAGSKRIGFDVADDGEDANATTLMHGNVIMEVDEWDGL 273 >gi|66391670|ref|YP_239195.1| gp17 terminase subunit, nuclease and ATPase [Enterobacteria phage RB43] gi|62288758|gb|AAX78741.1| gp17 terminase subunit, nuclease and ATPase [Enterobacteria phage RB43] Length = 609 Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 48/376 (12%), Positives = 103/376 (27%), Gaps = 65/376 (17%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + R + ++ L E + +C F + +Q E + Sbjct: 91 LKRAYVQTKWTKEMLMEWV---KCRDDIVYFAETYCAITHIDYGTIKVQ-LRDYQKEML- 145 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 +++H + V + R +GKTT+ A + + + +A+ + Sbjct: 146 -IEMHKNRMVTCNLS----------RQLGKTTVVAIFLAHFVCFNEDKYVGVLAHKASMS 194 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 L + + +LP E + S+ +D+K Sbjct: 195 AEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNKCKIGAF------- 235 Query: 181 PDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 + ++ DE + P+ +I + ++ I+ + T FY Sbjct: 236 ASSPDAVRGNSFAMIYIDECAFIPNFTDAWLAIQPVISSGRKSK--ILITTTPNGLNHFY 293 Query: 239 DIFNIP---LEDWKRYQIDTR----------TVEGIDSGFHEGIISRYGLDSDVARIEIL 285 DI+N + Y D G+ G + E Sbjct: 294 DIWNAAVEGKSGFVPYTAIWTSVKERLYTDGDNGVFDDGYSWSAKMIAGSSKEAFLQEHC 353 Query: 286 GQFPQQEVN----------NFIPHNYIEEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVV 334 +F ++I + E + + + D A G G D + Sbjct: 354 AEFMGTNGTLISGWKLSKMSWIDIDETETNFYQYKKPEEGHKYVAVLDPAEGRGQDYHAM 413 Query: 335 VFRRGNII--EHIFDW 348 + E + + Sbjct: 414 HIIDITTLPFEQVAVY 429 >gi|186682890|ref|YP_001866086.1| hypothetical protein Npun_R2589 [Nostoc punctiforme PCC 73102] gi|186465342|gb|ACC81143.1| hypothetical protein Npun_R2589 [Nostoc punctiforme PCC 73102] Length = 543 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 54/391 (13%), Positives = 110/391 (28%), Gaps = 75/391 (19%) Query: 22 AECVLSFKNFVMRFFPWGIKGKPL-EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKC 80 A+ S + G + P ++ P + + + + + S Sbjct: 4 AKLKTSSSKYAALVHG-GSRPIPFPQYADDPVGFFKNELGIELTNEQTIIAESVRDRPIT 62 Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 + A G GK+ + + ++++ + G I A SE Q+K LWAE+ K + + Sbjct: 63 NVKAAHGTGKSFIASLLVIYFLFC-VGGVAITTAPSEDQVKWILWAELRKIHGLHKTKLG 121 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + L + S+ T + ++F G H + DEA Sbjct: 122 GRCDIMQL---------------LFSETVYAFGITSRDYSENSFQGQHRQKQ-LLIEDEA 165 Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 G I+ + T + N F + V Sbjct: 166 DGITPQIDNGFIACLTGSDNRGLR--IGNPVDPQSQFAKTCKLDKRCLTVSAFSHPNVSW 223 Query: 261 ---------------------------------------------IDSGFHEGIISRYGL 275 I + E + Sbjct: 224 AYELCADGVYRLKPEVAEHIINEDGEIKPQQEWPPEFPRDRIPGAISIDWIERVRREKFE 283 Query: 276 DSDVARIEILGQFPQQEVNNFIPHNYIEEAM-------SREAIDDLYAPLIMGCDIAGEG 328 S + ++G++ + + I +++A P +G D+ G+G Sbjct: 284 TSAYWKGRVMGEYAEDAADGIILLTLLKQARSLYDQNPQYWDAIAKRYPWRLGLDV-GDG 342 Query: 329 GDKTVVVFRRGNIIEHIFDWSAK-LIQETNQ 358 GD + RG ++ + K + +T + Sbjct: 343 GDPHALALLRGPVLYEVQIHPTKGDLLDTER 373 >gi|61806451|ref|YP_214228.1| DNA maturase beta subunit [Prochlorococcus phage P-SSP7] gi|61374376|gb|AAX44230.1| DNA maturase beta subunit [Prochlorococcus phage P-SSP7] gi|265525485|gb|ACY76251.1| DNA maturase beta subunit [Prochlorococcus phage P-SSP7] Length = 577 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 53/375 (14%), Positives = 86/375 (22%), Gaps = 89/375 (23%) Query: 27 SFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR 86 FK F+ W P P R Q A+ + S + I A R Sbjct: 11 DFKLFLQAL--WDQLDLP-----SPTRAQ----YAIADYLQSGPK-------RLQIQAFR 52 Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G+GK+ + +LW + I+ I+ S+ + N + +H Sbjct: 53 GVGKSWITGAFVLWTLFNDAEKKIMIISASKERADNMSIFLQKLIIETPWLKHLRPKSDD 112 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTY----------SEERPDTFVGPHNTHGMAVF 196 + + L K IT + E P + + Sbjct: 113 ARWSRISFDVLCSPHQAPSVKSVGITGQLTGSRADLMILDDIEVPGNSMTELMREKLLQL 172 Query: 197 NDEASGT--------------PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242 EA P W + + + I Sbjct: 173 CTEAESILTPKDDSRIMYLGTPQTTFTVYRKLAERAYRPFVWPARY-PKDITPYEGLIAP 231 Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF-------------- 288 ED + +S + R + QF Sbjct: 232 QLQEDIDN----GAESGTVTDPDRFDDDDLQQRESAMGRSNFMLQFMLDTTLSDAEKFPL 287 Query: 289 -----------PQQEVNNFI-----------------PHNYIEEAMSREAIDDLYAPLIM 320 P + +N I P +Y M + Y I Sbjct: 288 KMADLVITSVNPTEAPDNVIWCSDPQNIIKDAPTVGLPGDYFYSPMQLQGEWTPYQETIC 347 Query: 321 GCDIAGEGGDKTVVV 335 D +G G D+T Sbjct: 348 SVDPSGRGTDETAAC 362 >gi|294085818|ref|YP_003552578.1| hypothetical protein SAR116_2251 [Candidatus Puniceispirillum marinum IMCC1322] gi|292665393|gb|ADE40494.1| protein of unknown function DUF264 [Candidatus Puniceispirillum marinum IMCC1322] Length = 454 Score = 116 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 77/281 (27%), Gaps = 22/281 (7%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAI-SAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 Q+ + ++ + AGRG GKT A + WL + I + Sbjct: 52 QINLLLYEWQLWARPKQLPPAGDWRVWLLMAGRGFGKTRAGAEWIRWLAQSGRARRIALV 111 Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173 + + + S LS+ P+ ++ + Sbjct: 112 GETFDDARQVMVEGASGILSVCPNWARPAWRAGQRTL------------------IWPSG 153 Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233 D + DE + + + + T R Sbjct: 154 TIARCYSADDPEQLRGPEFDYGWADEIAKW-RYPSAWDNLMLALRIGKSPQCIATTTPRP 212 Query: 234 NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293 W D+ ED Q +R S + R DS +AR E+ G Sbjct: 213 VRWLADL--AAAEDTVLVQGASRENAANLSPAFMAAMHRRFGDSYLARQELEGIMMSNLP 270 Query: 294 NNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334 + N I + +++G D A GGD+T + Sbjct: 271 DALWCRNDILRLHRPMPKRHRFIRIVIGVDPAMGGGDETGI 311 >gi|310722477|ref|YP_003969300.1| terminase DNA packaging enzyme large subunit [Aeromonas phage phiAS5] gi|306021320|gb|ADM79854.1| terminase DNA packaging enzyme large subunit [Aeromonas phage phiAS5] Length = 633 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 47/375 (12%), Positives = 106/375 (28%), Gaps = 66/375 (17%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSF-KNFVMRFF-PWGIKGKPLEHFSQPHRWQLEF 58 + R + ++ + E + ++ F +N+ WG+ L +Q + Sbjct: 117 LKRANVPTKWTKEMVEEWKRCRDDIVYFAENYCSIVHIDWGVIKVQL------RDYQKDM 170 Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 + + ++ P R +GKTT A + + ++ +A+ Sbjct: 171 LRIMST--ERMSMHNLP----------RQLGKTTATAIFLTHFVVFNEAKAVGVLAHKGD 218 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 + L + + +LP E + ++ +++ Sbjct: 219 MSREVLER-TKQCIELLPD-----------FLQPGIVEWNKGNIELENGCSI-------G 259 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236 + ++ DE + + K+IL + +R I+ ++T Sbjct: 260 AYASSPDAVRGNSFALIYVDECAFIEGFEDTWKAILPVISSGRKSR--IILTSTPNGINH 317 Query: 237 FYDIFN---IPLEDWKRYQIDTRTVEGI--------DSGFHEGIISRYGLDSDVARIEIL 285 +YD++ + +K Y TV+ D GF + R E Sbjct: 318 WYDLWEVSLNSDKGFKPYTTTWITVKERLYNGADKYDDGFEWATKQINSSSIEAFRQEHC 377 Query: 286 GQFPQQEVNNFIPHNYI---------EEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVV 335 F E+ + I D A G G D + + Sbjct: 378 CVFMGTAGTLINGFKLTKMIWDEVNNEDGFYCLEKPEPDHKYIATVDPAEGRGQDYSTMQ 437 Query: 336 FRRGNI--IEHIFDW 348 + + + Sbjct: 438 IIDVTVYPYRQVAVY 452 >gi|329849103|ref|ZP_08264131.1| phage terminase, large subunit, PBSX family [Asticcacaulis biprosthecum C19] gi|328844166|gb|EGF93735.1| phage terminase, large subunit, PBSX family [Asticcacaulis biprosthecum C19] Length = 430 Score = 115 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 42/296 (14%), Positives = 87/296 (29%), Gaps = 26/296 (8%) Query: 53 RWQLE---FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +W E +E + + F+ A GRG K+ A ++ PG Sbjct: 16 KWGGEGKVILEPIPAYRFLTKKPLGSFRFRAAY-GGRGAAKSWEFANAAIYHSLNTPGAR 74 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ + + L ++ + V L F + H +++ Sbjct: 75 VVFVREIQGSLADSAFTLVRNRLEAYGLEGAFRQANGRFH-------------HVENGAE 121 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 + + +P+ +EAS ++ + W + N Sbjct: 122 ILFLGLWRGNKPEGIKSLEGA--TLTIWEEASEGRQRSLDVLIPTVLRTPQSELWCLW-N 178 Query: 230 TRRLNGWFYDIFNIPLE--DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287 F +E +++ + E + D A G Sbjct: 179 PMLPTDPVDRFFRGDVEPQKTICRRVNWDSNPHFPEALREQMALDRKKDPLRAAWIWDGA 238 Query: 288 FPQQEVNNFIPHNYIEEAM--SREAIDDLYAPLIMGCDIAGEGGDKTVVVF--RRG 339 + N ++ A R+ + + +++G D AG GGD+ +V R G Sbjct: 239 YMPSAQNALWTRELLDRAWVQGRDKVMEAVGRVVVGVDPAGGGGDEVGIVVAGRYG 294 >gi|241760933|ref|ZP_04759022.1| phage terminase, large subunit, PBSX family [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374552|gb|EER64013.1| phage terminase, large subunit, PBSX family [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 428 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 42/286 (14%), Positives = 81/286 (28%), Gaps = 27/286 (9%) Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 P +K A GRG GK+ A M++ PG+ +CI + LK++ + Sbjct: 20 PARYKGAY-GGRGSGKSHFFAEMLVEDCLRLPGLRAVCIREVQKSLKDSAKRLI------ 72 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 E + + H + + + I + + ++ Sbjct: 73 -------EAKLSAYHLGSNVGFRVFRDHIQTPGNGIIIFQGMQDHTAESIKSLEGFSR-- 123 Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF--NIPLEDWKRYQ 252 + +EA + + ++ W N R + P Q Sbjct: 124 AWVEEAQTLSQRSLELLRPTIRTIDSE-LWFSW-NPRFKTDPVDRMLRGETPPTGAVVVQ 181 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + S + D D R G + + + + + Sbjct: 182 ANWENNPWFPSPLDQERRDCLANDPDKYRHIWEGGYAEITEGAYYAQALAKARSEKRIAV 241 Query: 313 DLYAPLI---MGCDIAGEG--GDKTVVVFRR--GNIIEHIFDWSAK 351 PL+ DI G G D T + + G I + + A+ Sbjct: 242 VAADPLMTLRAVWDIGGTGAKADATAIWIVQYVGREIRFLDHYEAQ 287 >gi|260906962|ref|ZP_05915284.1| hypothetical protein BlinB_16637 [Brevibacterium linens BL2] Length = 249 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 42/263 (15%), Positives = 79/263 (30%), Gaps = 42/263 (15%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P WQ + + + R +GKTT A+ L PG + Sbjct: 24 PELWQERLLRT--------------QEARVLVLCARQVGKTTATAYKALHAAMFNPGRDV 69 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + ++ S+ Q L S + M + + MG+ + Sbjct: 70 LIVSPSQRQSDEMLRRVASLYRGM--------------KEAPKLSRSNTSEMGLSNGSRV 115 Query: 171 ITCRTYSEERPDTFVGPHNTHGM-AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 ++ P + G G+ + DEAS D + S+L + S Sbjct: 116 VS-------LPGSEGGIRGFAGVKLLILDEASRVDDDVFASVLPMVASDGQ---MVALST 165 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 GWF+++ W+R+++ + + + G S V + L +F Sbjct: 166 PWGRRGWFHELHQETRNGWERHKVTVYESDQYTPPRIAEVKASLG--SFVFSSDYLCEF- 222 Query: 290 QQEVNNFIPHNYIEEAMSREAID 312 + + A S Sbjct: 223 GDTDSQLFSTENVRAAFSPGIQP 245 >gi|307251380|ref|ZP_07533296.1| hypothetical protein appser4_21360 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306856621|gb|EFM88761.1| hypothetical protein appser4_21360 [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 384 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 30/211 (14%), Positives = 64/211 (30%), Gaps = 9/211 (4%) Query: 153 WYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212 + E+ + + + + + T V+ +E ++ Sbjct: 13 PFFEVQKTQIIGRNGSRFTFA----GLKTNITSIKSMTGIDVVWVEEGENVSKESWDVLI 68 Query: 213 GFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271 E I++ N + L Y F P E ++ + E + Sbjct: 69 PTIREDGSQI--IVSFNPKNLLDDTYQRFVINPPERCCSVLVNWQDNPYFPKELMEDMKQ 126 Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIMGCDIAGEGG 329 D ++ R GQ I +IE+A+ ++G D+A EG Sbjct: 127 MKERDFELYRHVYEGQPVADSDLAIIKPLWIEKAVDAHKKLGFTASGRKVVGFDVADEGI 186 Query: 330 DKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360 D F G+++ + +W + ++ Sbjct: 187 DANANCFAHGSVVLQVDEWRGDDVIQSAHRT 217 >gi|260753099|ref|YP_003225992.1| phage terminase, large subunit, PBSX family [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552462|gb|ACV75408.1| phage terminase, large subunit, PBSX family [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 428 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 42/286 (14%), Positives = 81/286 (28%), Gaps = 27/286 (9%) Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 P +K A GRG GK+ A M++ PG+ +CI + LK++ + Sbjct: 20 PARYKGAY-GGRGSGKSHFFAEMLVEDCLRLPGLRAVCIREVQKSLKDSAKRLI------ 72 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 E + + H + + + I + + ++ Sbjct: 73 -------EAKLSAYHLGSNVGFRVFRDHIQTPGNGVIIFQGMQDHTAESIKSLEGFSR-- 123 Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF--NIPLEDWKRYQ 252 + +EA + + ++ W N R + P Q Sbjct: 124 AWVEEAQTLSQRSLELLRPTIRTIDSE-LWFSW-NPRFKTDPVDRMLRGETPPTGAVVVQ 181 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + S + D D R G + + + + + Sbjct: 182 ANWENNPWFPSPLDQERRDCLANDPDKYRHIWEGGYAEITEGAYYAQALAKARSEKRIAV 241 Query: 313 DLYAPLI---MGCDIAGEG--GDKTVVVFRR--GNIIEHIFDWSAK 351 PL+ DI G G D T + + G I + + A+ Sbjct: 242 VAADPLMTLRAVWDIGGTGAKADATAIWIVQYVGREIRFLDHYEAQ 287 >gi|56551275|ref|YP_162114.1| PBSX family phage terminase large subunit [Zymomonas mobilis subsp. mobilis ZM4] gi|56542849|gb|AAV89003.1| phage terminase, large subunit, PBSX family [Zymomonas mobilis subsp. mobilis ZM4] Length = 428 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 42/286 (14%), Positives = 81/286 (28%), Gaps = 27/286 (9%) Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 P +K A GRG GK+ A M++ PG+ +CI + LK++ + Sbjct: 20 PARYKGAY-GGRGSGKSHFFAEMLVEDCLRLPGLRAVCIREVQKSLKDSAKRLI------ 72 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 E + + H + + + I + + ++ Sbjct: 73 -------EAKLSAYHLGRNVGFRVFRDHIQTPGNGVIIFQGMQDHTAESIKSLEGFSR-- 123 Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF--NIPLEDWKRYQ 252 + +EA + + ++ W N R + P Q Sbjct: 124 AWVEEAQTLSQRSLELLRPTIRTIDSE-LWFSW-NPRFKTDPVDRMLRGETPPTGAVVVQ 181 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + S + D D R G + + + + + Sbjct: 182 ANWENNPWFPSPLDQERRDCLTNDPDKYRHIWEGGYAEITEGAYYAQALAKARSEKRIAV 241 Query: 313 DLYAPLI---MGCDIAGEG--GDKTVVVFRR--GNIIEHIFDWSAK 351 PL+ DI G G D T + + G I + + A+ Sbjct: 242 VAADPLMTLRAVWDIGGTGAKADATAIWIVQYVGREIRFLDHYEAQ 287 >gi|328952976|ref|YP_004370310.1| hypothetical protein Desac_1270 [Desulfobacca acetoxidans DSM 11109] gi|328453300|gb|AEB09129.1| hypothetical protein Desac_1270 [Desulfobacca acetoxidans DSM 11109] Length = 466 Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats. Identities = 50/297 (16%), Positives = 88/297 (29%), Gaps = 50/297 (16%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P WQ +F+ + + R GK+T A + L PG I Sbjct: 27 PDPWQQDFLVSRPEQA--------------LLLCSRQSGKSTSAAALALHEALFHPGALI 72 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + ++ S Q + L+ + + LPH S + D Sbjct: 73 LLLSPSLRQSQE-LFRKAAGLYQRLPHAPAACRTSA-------------LRLEFDHGSRI 118 Query: 171 ITCRTYSEERPDTFVGPHNTHGM-AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 I+ P + + DEA+ PD + ++ S Sbjct: 119 IS-------LPGQEETIRGFSEVRLLVIDEAALVPDELYYAVRPMLAVSRGRL--TALST 169 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 GWFY + + W+RY I I + F + L + R E +F Sbjct: 170 PAGKRGWFYHCYTEGGDQWQRYTIPATQCPRISADFL--AAEQRSLPAAWFRAEYFCEFG 227 Query: 290 QQEVNNFIPHNYIEEAMSREAID--------DLYAPLIMGCDIAGEGGDKTVVVFRR 338 + N P + ++ A + +G D+ G+ D + + Sbjct: 228 EAA-NQLFPAHLLQTAQCSQVSPLFAEITPSPPTGTFFIGLDL-GQSQDYSALTIIH 282 >gi|304373761|ref|YP_003858506.1| gp17 terminase subunit, nuclease and ATPase [Enterobacteria phage RB16] gi|299829717|gb|ADJ55510.1| gp17 terminase subunit, nuclease and ATPase [Enterobacteria phage RB16] Length = 609 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 48/376 (12%), Positives = 102/376 (27%), Gaps = 65/376 (17%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + R + +Q L E + +C F + +Q E + Sbjct: 91 LKRAFVQTKWTQQMLIEWV---KCRDDIVYFAETYCAITHIDYGTIKVQ-LRDYQKEML- 145 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 +++H + V + R +GKTT+ A + + + +A+ + Sbjct: 146 -IEMHKNRMVACNLS----------RQLGKTTVVAIFLAHFVCFNEDKFVGVLAHKASMS 194 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 L + + +LP E + S+ +D+K Sbjct: 195 AEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNKCKIGAF------- 235 Query: 181 PDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 + ++ DE + P +I + ++ I+ + T FY Sbjct: 236 ASSPDAVRGNAFAMIYIDECAFIPNFQDAWLAIQPVISSGRKSK--ILITTTPNGLNHFY 293 Query: 239 DIFNIP---LEDWKRYQIDTRTVEGIDSGFH----------EGIISRYGLDSDVARIEIL 285 DI+N + Y +V+ G + E Sbjct: 294 DIWNAAVEGKSGFVPYTAIWTSVKERLYTDGDDGVFDDGYSWSAKMIAGSSKEAFLQEHC 353 Query: 286 GQFPQQEVN----------NFIPHNYIEEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVV 334 +F ++I + E + + D A G G D + Sbjct: 354 AEFMGTNGTLISGWKLSKMSWIDIDETETNFYQYKKPIEGHKYVAVLDPAEGRGQDYHAM 413 Query: 335 VFRRGNII--EHIFDW 348 + + E + + Sbjct: 414 HIIDISAMPFEQVAVY 429 >gi|159904490|ref|YP_001548152.1| hypothetical protein MmarC6_0096 [Methanococcus maripaludis C6] gi|159885983|gb|ABX00920.1| protein of unknown function DUF264 [Methanococcus maripaludis C6] Length = 505 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 49/372 (13%), Positives = 94/372 (25%), Gaps = 62/372 (16%) Query: 2 PRLISTDQKLEQELHE---MLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEF 58 P L+ ++ + E + H+ Q E Sbjct: 9 PNYAPQAPYGLGYLNTNPSIIHNPEIKDHLTYNFNHSLEKTACFVEFFMDRKLHQAQEEI 68 Query: 59 MEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 EA+ + ++ I+ GR GKT + + S G S++ +A Sbjct: 69 AEAI-----------DSEMYDVITINIGRRGGKTEVMGGVGPKFCSKYRGFSVLVVAPVY 117 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177 Q K S R + + S + T Sbjct: 118 NQAKTMYKKIKRGLESNKESRQLVKPKKEGFKESPFPL------------ITFYNGSTIE 165 Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNPNRFWIMTSNTRRLNGW 236 + +T + + DEA+ D I + + + S Sbjct: 166 FKSAETPDNLRSEGYDLIIVDEAAFVDDEIISAVLEPMLMDSGG--ILVKISTPWGTGNH 223 Query: 237 FYDIF----------------NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280 FYD + +K ++ + + F G G D+ V Sbjct: 224 FYDSYIKGELQAKMLEEGEGIPEDELRYKSFKFPSWVNPYLSKRFLMGKKKDLGEDNPVW 283 Query: 281 RIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL--------------YAPLIMGCDIAG 326 E +F + + +++ +S ++G D+A Sbjct: 284 LQEYCAEFIE-DDTTVFSTAHVQACLSDAFETHYKTENLIYLIDEGERNKEYVIGLDLAK 342 Query: 327 EGGDKTVVVFRR 338 D TV + Sbjct: 343 H-NDYTVFIVLD 353 >gi|323699495|ref|ZP_08111407.1| protein of unknown function DUF264 [Desulfovibrio sp. ND132] gi|323459427|gb|EGB15292.1| protein of unknown function DUF264 [Desulfovibrio desulfuricans ND132] Length = 428 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 75/302 (24%), Gaps = 33/302 (10%) Query: 67 HSNVNNSNPTIFKCAISAG-RGIGKTTLNAWMML--WLISTRPGMSIICIANSETQLKNT 123 + + + A+ R GKT L+ ++ + R IA Q K Sbjct: 9 REHQARIEAELGRFAVLVCHRRFGKTVLSVNRLINAARETRRDDWRGAYIAPLYRQAKTV 68 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 +W E+ ++ + L + Sbjct: 69 VWDELKRYCGFGLDGCTVKFNETELRAD------------------FDNGSRIRLFGANN 110 Query: 184 FVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242 + V DE + P + + I ++ + W M T R Y+I+ Sbjct: 111 PDSLRGMYLDGVVFDEVAQMPLRVWTEVIRPALSD---RKGWAMFIGTPRGKNALYEIWE 167 Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302 D R E E S + + E F + Sbjct: 168 KGKTDPDWLAAMYRASETGILPVEELEASAREMSPEEYEQEFECSFTAAIRGAYFGQLLA 227 Query: 303 EEAMS---REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359 + + D P+ D+ D T + F + ++ E E Sbjct: 228 DADREGRMTDVPADPSMPVHTAWDLGM--SDSTSIWFVQA---RPGGTFAVIDYYEACGE 282 Query: 360 GC 361 G Sbjct: 283 GL 284 >gi|294661596|ref|YP_003580049.1| gp17 large terminase protein [Klebsiella phage KP15] gi|292660757|gb|ADE35005.1| gp17 large terminase protein [Klebsiella phage KP15] Length = 609 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 48/378 (12%), Positives = 105/378 (27%), Gaps = 69/378 (18%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + R + +Q L E + +C F + +Q E + Sbjct: 91 LKRAYIQTKWTQQMLMEWV---KCRDDIVYFAETYCAITHIDYGTIKVQ-LRDYQREML- 145 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 +++H + V + R +GKTT+ A + + + +A+ + Sbjct: 146 -IEMHKNRMVACNLS----------RQLGKTTVVAIFLAHFVCFNEDKYVGVLAHKASMS 194 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 L + + +LP E + S+ +D+K Sbjct: 195 AEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNKCKIGAF------- 235 Query: 181 PDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 + ++ DE + P+ +I + ++ I+ + T FY Sbjct: 236 ASSPDAVRGNSFAMIYIDECAFIPNFIDAWLAIQPVISSGRKSK--ILITTTPNGLNHFY 293 Query: 239 DIFNIP---LEDWKRYQIDTRTVEGI------------DSGFHEGIISRYGLDSDVARIE 283 DI+N + Y +V+ + +I+ + E Sbjct: 294 DIWNAAIEGKSGFVPYTAIWTSVKERLYTDGDDGVFDDGYSWSSKMIASSSKE--AFLQE 351 Query: 284 ILGQFPQQEVN----------NFIPHNYIEEAMSREAIDDLYAPLIMGCDIA-GEGGDKT 332 +F +++ + E + I D A G G D Sbjct: 352 HCAEFMGTNGTLIAGWKLSKLSWVDTDETETNFYQYKAPVEGHKYIAVLDPAEGRGQDYH 411 Query: 333 VVVFRRGNII--EHIFDW 348 + + E + + Sbjct: 412 AMHIIDITSMPFEQVAVY 429 >gi|116326387|ref|YP_803107.1| terminase subunit nuclease and ATPase [Enterobacteria phage RB32] gi|115343980|gb|ABI94989.1| terminase subunit nuclease and ATPase [Enterobacteria phage RB32] Length = 610 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 44/363 (12%), Positives = 94/363 (25%), Gaps = 63/363 (17%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + R Q + + E +C F + + +Q + ++ Sbjct: 93 LKRANIKTQWTREMVEEWK---KCRDDIVYFAETYCAITHIDYGVIKVQ-LRDYQRDMLK 148 Query: 61 AVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119 + + + R +GKTT+ A + + ++ +A+ + Sbjct: 149 IMS-------------SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSM 195 Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 L + + +LP E + S+ +D+ Sbjct: 196 SAEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSI-------GA 236 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 + ++ DE + P+ +I + ++ I+ + T F Sbjct: 237 YASSPDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSK--IIITTTPNGLNHF 294 Query: 238 YDIFNIPLED----------WKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 YDI+ +E W + + D G+ I + G R E Sbjct: 295 YDIWTAAVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSTLAQFRQEHTA 354 Query: 287 QFPQQEVNNFIPHNYI----------EEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVV 335 F + R + I D + G G D + Sbjct: 355 AFEGTSGTLISGMKLAIMDFIEVTPDDHGFHRFKKPEPDRKYIATLDCSEGRGQDYHALH 414 Query: 336 FRR 338 Sbjct: 415 IID 417 >gi|300907068|ref|ZP_07124735.1| phage terminase, large subunit, PBSX family [Escherichia coli MS 84-1] gi|301304068|ref|ZP_07210185.1| phage terminase, large subunit, PBSX family [Escherichia coli MS 124-1] gi|300401186|gb|EFJ84724.1| phage terminase, large subunit, PBSX family [Escherichia coli MS 84-1] gi|300840675|gb|EFK68435.1| phage terminase, large subunit, PBSX family [Escherichia coli MS 124-1] gi|315257729|gb|EFU37697.1| phage terminase, large subunit, PBSX family [Escherichia coli MS 85-1] Length = 440 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 39/271 (14%), Positives = 91/271 (33%), Gaps = 23/271 (8%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GR K+ A + + +S + + C + +++ +++ + + RH F + Sbjct: 4 GGRSSSKSWDAAGIAI-FLSNKYSLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRI 62 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + + + + + ++ +EA Sbjct: 63 LNNKIINRV-------------TGSEFVFYGLWR----NIEEIKSLEGISVLWLEEAHAL 105 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262 + K + + ++I N + + + F P ED +I+ + Sbjct: 106 TEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEDTLIRKINYDENPFLS 163 Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIM 320 + I + D D + G + I ++IE A+ + + + Sbjct: 164 DTMLKVIEAAKRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAAVDAHKVLNFEPSGRKRI 223 Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 G D+A G DK V+R G+++ +W AK Sbjct: 224 GFDVADSGADKCANVYRHGSVVYWADEWKAK 254 >gi|38640149|ref|NP_944105.1| gp17 terminase DNA packaging enzyme large subunit [Aeromonas phage Aeh1] gi|33414835|gb|AAQ17878.1| gp17 terminase DNA packaging enzyme large subunit [Aeromonas phage Aeh1] Length = 633 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 47/366 (12%), Positives = 100/366 (27%), Gaps = 70/366 (19%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFV-----MRFFPWGIKGKPLEHFSQPHRWQ 55 + R + + + E C F + WG+ L +Q Sbjct: 117 LKRANVPTKWTREMVEEWK---RCRDDIVYFAETYCSIIHIDWGVIKVQL------RDYQ 167 Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 + + + ++ P R +GKTT A + + ++ +A+ Sbjct: 168 KDMLRIMA--SERMSMHNLP----------RQLGKTTATAIFLTHFVVFNEAKAVGVLAH 215 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 K L + + +LP E + ++ +++ Sbjct: 216 KGDMSKEVLER-TKQSIELLPD-----------FLQPGIVEWNKGNIELENGCSI----- 258 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRL 233 + ++ DE + + K+IL + +R I+ ++T Sbjct: 259 --GAYASSPDAVRGNSFALIYVDECAFIEGFEDTWKAILPVISSGRQSR--IILTSTPNG 314 Query: 234 NGWFYDIFN---IPLEDWKRYQIDTRTVEGI--------DSGFHEGIISRYGLDSDVARI 282 +YD++ + +K Y TV+ D GF + + Sbjct: 315 INHWYDLWEVSLKSDKGFKPYTTTWITVKERLYDGSDAYDDGFEWASKQINSSSVEAFQQ 374 Query: 283 EILGQFPQQEVNNFIPHNY---------IEEAMSREAIDDLYAPLIMGCDIA-GEGGDKT 332 E L +F ++ + I D A G G D + Sbjct: 375 EHLCRFMGTSGTLINGFKLSKMTWKEVIADDNFYQIEKPVEGNKYIATVDPAEGRGQDYS 434 Query: 333 VVVFRR 338 + Sbjct: 435 TIQIID 440 >gi|282599341|ref|YP_003358653.1| Gp17 terminase DNA packaging enzyme large subunit [Shigella phage phiSboM-AG3] gi|226973647|gb|ACO94400.1| Gp17 terminase DNA packaging enzyme large subunit [Shigella phage phiSboM-AG3] Length = 736 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 52/292 (17%), Positives = 87/292 (29%), Gaps = 47/292 (16%) Query: 91 TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150 TT+ A +LW I +AN E Q L R Q L Sbjct: 269 TTVVAAFLLWYAMFHSDKEIAVLANKEKQAIEIL------------DRIRKAYQDLPFFL 316 Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IIN 208 + + ++ T S ++ DE + + Sbjct: 317 QQGCEKFGSTLIEFENGSKIYAYATSS-------DSIRGRSVSLLYVDEVAFIENDFEFW 369 Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF------NIPLEDWKRYQIDTRTVEGID 262 +S + +R I+TS + G FYDI + D+K ++ V Sbjct: 370 ESTFPAIASADTSR-CILTSTPKGQRGLFYDIVTKANPEHPQYNDFKLTEVPWYRVPTYT 428 Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--------DL 314 + R L E +F + V + IP +++ S+ + Sbjct: 429 KDPNWESKQRAKLGDARFDQEFGIKF-RGSVGSLIPAKCLDKMTSKLYQEPNEFTKIYHD 487 Query: 315 YAPLIMGCDIAGEG----GDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGCP 362 Y P + IA G GD +V+ I I D+ K+ + P Sbjct: 488 YDPKRIYMGIADTGKGVEGDYSVL------TILDITDYPHKIAAKYRNNTIP 533 >gi|311993449|ref|YP_004010314.1| gp17 terminase DNA packaging enzyme large subunit [Acinetobacter phage Acj9] gi|295917406|gb|ADG60077.1| gp17 terminase DNA packaging enzyme large subunit [Acinetobacter phage Acj9] Length = 609 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 51/364 (14%), Positives = 102/364 (28%), Gaps = 64/364 (17%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + R Q + + E + C F + +Q + ++ Sbjct: 94 LKRANIKIQWNQDMISEWI---RCRDDIVYFAETYCAITHIDYGTIKVQ-LRDYQKDMLK 149 Query: 61 AVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119 + + + ++S R +GKTT+ A + W +I +A+ + Sbjct: 150 IMAEN-------------RMSVSKLSRQLGKTTVVAIFLAWFACFNKDKNIGILAHKGSM 196 Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 L + + +LP E + S+ +D+ Sbjct: 197 SAEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSAISA------- 237 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 + ++ DE + P + +I + I+ + T F Sbjct: 238 YAASPDAVRGNSFSLIYIDECAFIPNFNDAWLAIQPVISSG--RHSKIIITTTPNGMNHF 295 Query: 238 YDIFNIPLE----------DWKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 YDI+ +E +W + + D G+H + G + R E +G Sbjct: 296 YDIWTAAVEGISGFVPYESEWNAVKERLYDDKDVFDDGWHFSFTTIGGSSVEQFRQEHVG 355 Query: 287 QFPQQEVNNFI-----------PHNYIEEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVV 334 F + + P N + + D I D A G G D + Sbjct: 356 VFAGGQGTLSLRHETCNLKLETPINVGDSTFYKYKEPDPTRKYIATLDSAEGRGQDYHCM 415 Query: 335 VFRR 338 Sbjct: 416 NIID 419 >gi|228861099|ref|YP_002854122.1| gp17 terminase subunit [Enterobacteria phage RB51] gi|227438773|gb|ACP31085.1| gp17 terminase subunit [Enterobacteria phage RB51] Length = 610 Score = 110 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 44/363 (12%), Positives = 94/363 (25%), Gaps = 63/363 (17%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + R Q + + E +C F + + +Q + ++ Sbjct: 93 LKRANIKTQWTREMVEEWK---KCRDDIVYFAETYCAITHIDYGVIKVQ-LRDYQRDMLK 148 Query: 61 AVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119 + + + R +GKTT+ A + + ++ +A+ + Sbjct: 149 IMS-------------SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSM 195 Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 L + + +LP E + S+ +D+ Sbjct: 196 SAEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSI-------GA 236 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 + ++ DE + P+ +I + ++ I+ + T F Sbjct: 237 YASSPDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSK--IIITTTPNGLNHF 294 Query: 238 YDIFNIPLED----------WKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 YDI+ +E W + + D G+ I + G R E Sbjct: 295 YDIWTAAVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSTLAQFRQEHTA 354 Query: 287 QFPQQEVNNFIPHNYI----------EEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVV 335 F + R + I D + G G D + Sbjct: 355 AFEGTSGTLISGMKLAVMDFIEVTPDDHGFHRFKSPEPDRKYIATLDCSEGRGQDYHALH 414 Query: 336 FRR 338 Sbjct: 415 IID 417 >gi|330858684|ref|YP_004415059.1| putative terminase subunit nuclease and ATPase [Shigella phage Shfl2] gi|291290383|dbj|BAI83178.1| terminase subunit nuclease and ATPase [Enterobacteria phage AR1] gi|327397618|gb|AEA73120.1| putative terminase subunit nuclease and ATPase [Shigella phage Shfl2] Length = 610 Score = 110 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 44/363 (12%), Positives = 94/363 (25%), Gaps = 63/363 (17%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + R Q + + E +C F + + +Q + ++ Sbjct: 93 LKRANIKTQWTREMVEEWK---KCRDDIVYFAETYCAITHIDYGVIKVQ-LRDYQRDMLK 148 Query: 61 AVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119 + + + R +GKTT+ A + + ++ +A+ + Sbjct: 149 IMS-------------SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSM 195 Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 L + + +LP E + S+ +D+ Sbjct: 196 SAEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSI-------GA 236 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 + ++ DE + P+ +I + ++ I+ + T F Sbjct: 237 YASSPDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSK--IIITTTPNGLNHF 294 Query: 238 YDIFNIPLED----------WKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 YDI+ +E W + + D G+ I + G R E Sbjct: 295 YDIWTAAVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSTLAQFRQEHTA 354 Query: 287 QFPQQEVNNFIPHNYI----------EEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVV 335 F + R + I D + G G D + Sbjct: 355 AFEGTSGTLISGMKLAVMDFIEVTPDDHGFHRFKSPEPDRKYIATLDCSEGRGQDYHALH 414 Query: 336 FRR 338 Sbjct: 415 IID 417 >gi|228861479|ref|YP_002854500.1| gp17 terminase subunit [Enterobacteria phage RB14] gi|227438495|gb|ACP30808.1| gp17 terminase subunit [Enterobacteria phage RB14] Length = 610 Score = 110 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 44/363 (12%), Positives = 94/363 (25%), Gaps = 63/363 (17%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + R Q + + E +C F + + +Q + ++ Sbjct: 93 LKRANIKTQWTREMVEEWK---KCRDDIVYFAETYCAITHIDYGVIKVQ-LRDYQRDMLK 148 Query: 61 AVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119 + + + R +GKTT+ A + + ++ +A+ + Sbjct: 149 IMS-------------SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSM 195 Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 L + + +LP E + S+ +D+ Sbjct: 196 SAEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSI-------GA 236 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 + ++ DE + P+ +I + ++ I+ + T F Sbjct: 237 YASSPDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSK--IIITTTPNGLNHF 294 Query: 238 YDIFNIPLED----------WKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 YDI+ +E W + + D G+ I + G R E Sbjct: 295 YDIWTAAVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSSLAQFRQEHTA 354 Query: 287 QFPQQEVNNFIPHNYI----------EEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVV 335 F + R + I D + G G D + Sbjct: 355 AFEGTSGTLISGMKLAIMDFIEVTPDDHGFHRFKSPEPDRKYIATLDCSEGRGQDYHALH 414 Query: 336 FRR 338 Sbjct: 415 IID 417 >gi|262276634|ref|ZP_06054439.1| P-loop protein [alpha proteobacterium HIMB114] gi|262225214|gb|EEY75661.1| P-loop protein [alpha proteobacterium HIMB114] Length = 409 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 40/271 (14%), Positives = 79/271 (29%), Gaps = 34/271 (12%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 F+ I+ GR GKT L +L I ++ + K +W ++ K + L Sbjct: 15 KRFRVLIT-GRRFGKTHLCLVEILRQARHCDNGKIFYVSPTYRMSKEIMWKQIKKLVKEL 73 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 + L++ + S+ K + Sbjct: 74 RWDKYINETELTIVL----VNNCQISLKGADKSA---------------DNLRGVGLNFL 114 Query: 196 FNDEASGTPDIIN-KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL---EDWKRY 251 DE + P+ + + ++ N + + W YD+F +WK + Sbjct: 115 VLDEFADIPEEAWTEVLRPTISDKYANGKVLFVGTPKGYGNWSYDMFQRGQAGDPEWKSW 174 Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311 + T ++ E D+ R E F + N+ + Sbjct: 175 KYTTIEGGQVEPHEIEQAKKDL--DARSFRQEYEASFETYAGVVYY--NFDRAKNVKPVP 230 Query: 312 DDLYAPLIMGCDIAGEGGD---KTVVVFRRG 339 D A + +G D D + ++G Sbjct: 231 YDQNAVIHIGMD---FNIDPMSACLFYVKQG 258 >gi|194434997|ref|ZP_03067239.1| phage terminase, large subunit, pbsx family [Shigella dysenteriae 1012] gi|194416779|gb|EDX32906.1| phage terminase, large subunit, pbsx family [Shigella dysenteriae 1012] gi|323166781|gb|EFZ52535.1| phage terminase, large subunit, PBSX family [Shigella sonnei 53G] Length = 447 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 38/271 (14%), Positives = 89/271 (32%), Gaps = 23/271 (8%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GR K+ A + + +S + + C + +++ +++ + + RH F + Sbjct: 10 GGRSSSKSWDAAGIAI-FLSNKYTLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRI 68 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + + + + + ++ +EA Sbjct: 69 LNNKIINRV-------------TGSEFVFYGLWR----NIEEIKSLEGIDVLWLEEAHAL 111 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262 + K + + ++I N + + + F P E +I+ + Sbjct: 112 TEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEGTLIRKINYDENPFLS 169 Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIM 320 + I + D D + G + I ++IE A+ + + Sbjct: 170 DTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAAVDAHKTLNFEPSGRKRI 229 Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 G D+A G DK V+R G+++ +W AK Sbjct: 230 GFDVADSGTDKCANVYRHGSVVFWADEWKAK 260 >gi|326804661|ref|YP_004327532.1| Gp17 terminase subunit for DNA packaging, nuclease and ATPase [Salmonella phage Vi01] gi|301795311|emb|CBW38029.1| Gp17 terminase subunit for DNA packaging, nuclease and ATPase [Salmonella phage Vi01] Length = 736 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 49/292 (16%), Positives = 84/292 (28%), Gaps = 47/292 (16%) Query: 91 TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150 TT+ A +LW I +AN E Q L R Q L Sbjct: 269 TTVVAAFLLWYAMFHSDKEIAVLANKEKQAIEIL------------DRIRKAYQDLPFFL 316 Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IIN 208 + + ++ T S ++ DE + + Sbjct: 317 QQGCEKFGSTLIEFENGSKIYAYATSS-------DSIRGRSVSLLYVDEVAFIENDFEFW 369 Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF------NIPLEDWKRYQIDTRTVEGID 262 +S + +R I+TS + G FYDI + D+ ++ V Sbjct: 370 ESTFPAIASADTSR-CILTSTPKGQRGLFYDIVTKADPRHPQYNDFHLTEVPWYKVPAYT 428 Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD--------L 314 R L E +F + V + IP +++ S+ + Sbjct: 429 KDPDWETKQRARLGDARFDQEFGIKF-RGSVGSLIPAKCLDKMTSKLYREPNEFTKIYKE 487 Query: 315 YAPLIMGCDIAGEG----GDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGCP 362 Y P + IA G GD +V+ I I ++ + + P Sbjct: 488 YDPQRIYFGIADTGKGVEGDYSVL------TILDITEYPHVIAAKYRNNTIP 533 >gi|324012808|gb|EGB82027.1| phage terminase, large subunit, PBSX family [Escherichia coli MS 60-1] Length = 441 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 38/271 (14%), Positives = 89/271 (32%), Gaps = 23/271 (8%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GR K+ A + + +S + + C + +++ +++ + + RH F + Sbjct: 4 GGRSSSKSWDAAGIAI-FLSNKYTLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRI 62 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + + + + + ++ +EA Sbjct: 63 LNNKIINRV-------------TGSEFVFYGLWR----NIEEIKSLEGIDVLWLEEAHAL 105 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262 + K + + ++I N + + + F P E +I+ + Sbjct: 106 TEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEGTLIRKINYDENPFLS 163 Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIM 320 + I + D D + G + I ++IE A+ + + Sbjct: 164 DTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAAVDAHKTLNFEPSGRKRI 223 Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 G D+A G DK V+R G+++ +W AK Sbjct: 224 GFDVADSGTDKCANVYRHGSVVFWADEWKAK 254 >gi|16760783|ref|NP_456400.1| bacteriophage protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|25512494|pir||AE0735 probable bacteriophage protein STY2040 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503080|emb|CAD05583.1| putative bacteriophage protein [Salmonella enterica subsp. enterica serovar Typhi] Length = 467 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 38/271 (14%), Positives = 89/271 (32%), Gaps = 23/271 (8%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GR K+ A + + +S + + C + +++ +++ + + RH F + Sbjct: 30 GGRSSSKSWDAAGIAI-FLSNKYTLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRI 88 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + + + + + ++ +EA Sbjct: 89 LNNKIINRV-------------TGSEFVFYGLWR----NIEEIKSLEGIDVLWLEEAHAL 131 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262 + K + + ++I N + + + F P E +I+ + Sbjct: 132 TEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEGTLIRKINYDENPFLS 189 Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIM 320 + I + D D + G + I ++IE A+ + + Sbjct: 190 DTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAAVDAHKTLNFEPSGRKRI 249 Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 G D+A G DK V+R G+++ +W AK Sbjct: 250 GFDVADSGTDKCANVYRHGSVVFWADEWKAK 280 >gi|74311301|ref|YP_309720.1| putative bacteriophage protein [Shigella sonnei Ss046] gi|73854778|gb|AAZ87485.1| putative bacteriophage protein [Shigella sonnei Ss046] Length = 473 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 38/271 (14%), Positives = 89/271 (32%), Gaps = 23/271 (8%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GR K+ A + + +S + + C + +++ +++ + + RH F + Sbjct: 36 GGRSSSKSWDAAGIAI-FLSNKYTLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRI 94 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + + + + + ++ +EA Sbjct: 95 LNNKIINRV-------------TGSEFVFYGLWR----NIEEIKSLEGIDVLWLEEAHAL 137 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262 + K + + ++I N + + + F P E +I+ + Sbjct: 138 TEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEGTLIRKINYDENPFLS 195 Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIM 320 + I + D D + G + I ++IE A+ + + Sbjct: 196 DTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAAVDAHKTLNFEPSGRKRI 255 Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 G D+A G DK V+R G+++ +W AK Sbjct: 256 GFDVADSGTDKCANVYRHGSVVFWADEWKAK 286 >gi|188492395|ref|ZP_02999665.1| phage terminase large subunit [Escherichia coli 53638] gi|188487594|gb|EDU62697.1| phage terminase large subunit [Escherichia coli 53638] Length = 467 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 38/271 (14%), Positives = 89/271 (32%), Gaps = 23/271 (8%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GR K+ A + + +S + + C + +++ +++ + + RH F + Sbjct: 30 GGRSSSKSWDAAGIAI-FLSNKYTLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRI 88 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + + + + + ++ +EA Sbjct: 89 LNNKIINRV-------------TGSEFVFYGLWR----NIEEIKSLEGIDVLWLEEAHAL 131 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262 + K + + ++I N + + + F P E +I+ + Sbjct: 132 TEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEGTLIRKINYDENPFLS 189 Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIM 320 + I + D D + G + I ++IE A+ + + Sbjct: 190 DTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAAVDAHKTLNFEPSGRKRI 249 Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 G D+A G DK V+R G+++ +W AK Sbjct: 250 GFDVADSGTDKCANVYRHGSVVFWADEWKAK 280 >gi|9632853|ref|NP_049777.1| gp17'A unknown function [Enterobacteria phage T4] gi|5354477|gb|AAD42684.1|AF158101_271 gp17'A unknown function [Enterobacteria phage T4] gi|299780522|gb|ADJ39884.1| gp17'A [Enterobacteria phage T4T] Length = 523 Score = 109 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 43/363 (11%), Positives = 94/363 (25%), Gaps = 63/363 (17%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + R Q + + E +C F + + +Q + ++ Sbjct: 6 LKRANIKTQWTREMVEEWK---KCRDDIVYFAETYCAITHIDYGVIKVQ-LRDYQRDMLK 61 Query: 61 AVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119 + + + R +GKTT+ A + + ++ +A+ + Sbjct: 62 IMS-------------SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSM 108 Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 L + + +LP E + S+ +D+ Sbjct: 109 SAEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSI-------GA 149 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 + ++ DE + P+ +I + ++ I+ + T F Sbjct: 150 YASSPDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSK--IIITTTPNGLNHF 207 Query: 238 YDIFNIPLED----------WKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 YDI+ +E W + + D G+ I + G R E Sbjct: 208 YDIWTAAVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSSLAQFRQEHTA 267 Query: 287 QFPQQEVNNFIPHNYI----------EEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVV 335 F + + + I D + G G D + Sbjct: 268 AFEGTSGTLISGMKLAVMDFIEVTPDDHGFHQFKKPEPDRKYIATLDCSEGRGQDYHALH 327 Query: 336 FRR 338 Sbjct: 328 IID 330 >gi|103487487|ref|YP_617048.1| hypothetical protein Sala_2004 [Sphingopyxis alaskensis RB2256] gi|98977564|gb|ABF53715.1| protein of unknown function DUF264 [Sphingopyxis alaskensis RB2256] Length = 436 Score = 109 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 44/263 (16%), Positives = 74/263 (28%), Gaps = 25/263 (9%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + AGRG GKT A + T PG I +A S + + + S L++ P Sbjct: 54 LLAGRGFGKTRTGAEWVRAFAETTPGARIALVAASLLEARQVMVEGESGLLAIAPDHLRP 113 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 E +S + + A + DE + Sbjct: 114 EYESSLRRLT------------------WPNGAVATLYSAVEPDSLRGPEHDAAWCDEIA 155 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI 261 P T R ++ + T R + Sbjct: 156 KWPKGEAAWDNLMLTMRIGARPQVVATTTPRCV-PLVRRLIQERGVATTRGRTASNRRNL 214 Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMG 321 + + + YG + R E+ G+ + + IE +A +++G Sbjct: 215 SVQWLATMDAIYGGT-RLGRQELDGELLEDVEDALWTRALIERCRVDAGSIGKFARVVIG 273 Query: 322 CD-IAGEGGDKTVVVF----RRG 339 D A GGD +V R G Sbjct: 274 VDPPASAGGDACGIVVAALLRDG 296 >gi|218781804|ref|YP_002433122.1| hypothetical protein Dalk_3968 [Desulfatibacillum alkenivorans AK-01] gi|218763188|gb|ACL05654.1| protein of unknown function DUF264 [Desulfatibacillum alkenivorans AK-01] Length = 443 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 78/302 (25%), Gaps = 36/302 (11%) Query: 67 HSNVNNSNPTIFKCAISAG-RGIGKTTLNAWMMLWLISTRP--GMSIICIANSETQLKNT 123 + + + ++ R GKT ++ P IA Q K+ Sbjct: 25 RRHQWEIHQNKKRFSVLVCHRRFGKTVAAVNELIMKACQNPLPAPRYAYIAPLYKQAKSV 84 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 +W + K+ A + + + D Sbjct: 85 VWDYLKKF---------------------AGAINGTTFHETELRCDLPNGARITLLGADN 123 Query: 184 FVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242 + DE + P+ + + I ++ W M T R + FYD++ Sbjct: 124 PDRLRGIYLDGAVLDEMAQMPERVWGEIIRPALSD---RLGWAMFIGTPRGHNAFYDLYQ 180 Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302 D + R E G E ++ + + E F V + Sbjct: 181 FARSDPDWFCAMYRASETGIVGRDELDAAKKEMTPEQYEQEFECSFSAAIVGAYYGPLIA 240 Query: 303 EE---AMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359 + + P+ D+ D T V F + + + E + Sbjct: 241 QAEKEGRIVTLPVERALPVHTAWDLGM--SDSTAVWFFQ---VSPGGEIRVVDYLEDAGQ 295 Query: 360 GC 361 G Sbjct: 296 GL 297 >gi|85716479|ref|ZP_01047450.1| prophage MuMc02, terminase, ATPase subunit, putative [Nitrobacter sp. Nb-311A] gi|85696668|gb|EAQ34555.1| prophage MuMc02, terminase, ATPase subunit, putative [Nitrobacter sp. Nb-311A] Length = 250 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 44/263 (16%), Positives = 73/263 (27%), Gaps = 40/263 (15%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P WQ E + + + R GKTT+ A M L G + Sbjct: 24 PDPWQAELLR--------------LNPKRALLLCSRQSGKTTVTALMALHRAIYETGALV 69 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + ++ S Q L ++ K L + + + + Sbjct: 70 VIVSPSNRQSGEML-RQIKKLHGSLKGAPELVGDA-------------VLKVELANGSRI 115 Query: 171 ITCRTYSEERPDTFVGPHN-THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 I P T V DEAS D + ++ + I + Sbjct: 116 IA-------LPGTEKTIRGIAGVSLVIIDEASRVDDELLAAVRPMLATR-ADGSLIALTT 167 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 G+FY+ ++ + W R ++ I F + G E F Sbjct: 168 PAGKRGFFYEAWHSDDQTWHRVRVAASDCPRISKEFLADELRSLG--PARYSEEYELAFV 225 Query: 290 QQEVNNFIPHNYIEEAMSREAID 312 + F P IE A + E Sbjct: 226 DDAASAF-PTAVIERAFTTEVEP 247 >gi|9632591|ref|NP_049776.1| gp17 terminase DNA packaging enzyme, large subunit [Enterobacteria phage T4] gi|137951|sp|P17312|TERL_BPT4 RecName: Full=Large terminase protein; AltName: Full=DNA-packaging protein Gp17; AltName: Full=Terminase large subunit gi|5354215|gb|AAD42422.1|AF158101_9 gp17 terminase DNA packaging enzyme, large subunit [Enterobacteria phage T4] gi|15201|emb|CAA36641.1| unnamed protein product [Enterobacteria phage T4] gi|299780521|gb|ADJ39883.1| large terminase protein [Enterobacteria phage T4T] Length = 610 Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 43/363 (11%), Positives = 94/363 (25%), Gaps = 63/363 (17%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + R Q + + E +C F + + +Q + ++ Sbjct: 93 LKRANIKTQWTREMVEEWK---KCRDDIVYFAETYCAITHIDYGVIKVQ-LRDYQRDMLK 148 Query: 61 AVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119 + + + R +GKTT+ A + + ++ +A+ + Sbjct: 149 IMS-------------SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSM 195 Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 L + + +LP E + S+ +D+ Sbjct: 196 SAEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSI-------GA 236 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 + ++ DE + P+ +I + ++ I+ + T F Sbjct: 237 YASSPDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSK--IIITTTPNGLNHF 294 Query: 238 YDIFNIPLED----------WKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 YDI+ +E W + + D G+ I + G R E Sbjct: 295 YDIWTAAVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSSLAQFRQEHTA 354 Query: 287 QFPQQEVNNFIPHNYI----------EEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVV 335 F + + + I D + G G D + Sbjct: 355 AFEGTSGTLISGMKLAVMDFIEVTPDDHGFHQFKKPEPDRKYIATLDCSEGRGQDYHALH 414 Query: 336 FRR 338 Sbjct: 415 IID 417 >gi|212703351|ref|ZP_03311479.1| hypothetical protein DESPIG_01394 [Desulfovibrio piger ATCC 29098] gi|212673197|gb|EEB33680.1| hypothetical protein DESPIG_01394 [Desulfovibrio piger ATCC 29098] Length = 509 Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 33/307 (10%), Positives = 70/307 (22%), Gaps = 42/307 (13%) Query: 67 HSNVNNSNPTIFKCAISAG-RGIGKTTLNAWMMLWLIST--RPGMSIICIANSETQLKNT 123 + + + R GKT +L R A Q K Sbjct: 19 RPLQWRFHQQRTRFCVLLCHRRFGKTVAAVNDLLRAALRTSRTDWRAAYAAPYLGQAKAV 78 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 W + + ++P + + + D Sbjct: 79 AWDYLRHFAGVIP---------------------GTRFHEGELRCDLPNGARIRLYGTDN 117 Query: 184 FVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242 + + DE + P + + + + + + + +D++ Sbjct: 118 AQALRGLYLDDLVLDEPADIPREVWSQILRPALADRRGRALFC--GTPKGCDNLLHDVWQ 175 Query: 243 -----IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297 E W R++ + + S G+ + E F + Sbjct: 176 LAGSLGAAEGWSRFRFPASQTGYLPQAELDAARS--GMSEAEYQQEFECSFAAAVRGAYY 233 Query: 298 ---PHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354 P+ D+ D T + F + +E W Sbjct: 234 AAQLDAADLAGRICPLPVSPDLPVHTAWDLGM--DDATAIWFFQ---VEPSGTWRMLDYY 288 Query: 355 ETNQEGC 361 E + EG Sbjct: 289 EASGEGL 295 >gi|220702483|pdb|3EZK|A Chain A, Bacteriophage T4 Gp17 Motor Assembly Based On Crystal Structures And Cryo-Em Reconstructions gi|220702484|pdb|3EZK|B Chain B, Bacteriophage T4 Gp17 Motor Assembly Based On Crystal Structures And Cryo-Em Reconstructions gi|220702485|pdb|3EZK|C Chain C, Bacteriophage T4 Gp17 Motor Assembly Based On Crystal Structures And Cryo-Em Reconstructions gi|220702486|pdb|3EZK|D Chain D, Bacteriophage T4 Gp17 Motor Assembly Based On Crystal Structures And Cryo-Em Reconstructions gi|220702487|pdb|3EZK|E Chain E, Bacteriophage T4 Gp17 Motor Assembly Based On Crystal Structures And Cryo-Em Reconstructions Length = 577 Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 43/363 (11%), Positives = 94/363 (25%), Gaps = 63/363 (17%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + R Q + + E +C F + + +Q + ++ Sbjct: 93 LKRANIKTQWTREMVEEWK---KCRDDIVYFAETYCAITHIDYGVIKVQ-LRDYQRDMLK 148 Query: 61 AVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119 + + + R +GKTT+ A + + ++ +A+ + Sbjct: 149 IMS-------------SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSM 195 Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 L + + +LP E + S+ +D+ Sbjct: 196 SAEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSI-------GA 236 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 + ++ DE + P+ +I + ++ I+ + T F Sbjct: 237 YASSPDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSK--IIITTTPNGLNHF 294 Query: 238 YDIFNIPLED----------WKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 YDI+ +E W + + D G+ I + G R E Sbjct: 295 YDIWTAAVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSSLAQFRQEHTA 354 Query: 287 QFPQQEVNNFIPHNYI----------EEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVV 335 F + + + I D + G G D + Sbjct: 355 AFEGTSGTLISGMKLAVMDFIEVTPDDHGFHQFKKPEPDRKYIATLDCSEGRGQDYHALH 414 Query: 336 FRR 338 Sbjct: 415 IID 417 >gi|308814529|ref|YP_003934803.1| terminase DNA packaging enzyme large subunit [Shigella phage SP18] gi|308206121|gb|ADO19520.1| terminase DNA packaging enzyme large subunit [Shigella phage SP18] Length = 610 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 47/363 (12%), Positives = 99/363 (27%), Gaps = 63/363 (17%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + R + ++ + E +C F + +Q + +E Sbjct: 93 LKRANIKIKWTKEMVQEWK---KCRDDIVYFAETYCAITHIDYGTIKVQ-LRDYQRDMLE 148 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + H + R +GKTT+ A + + ++ +A+ + Sbjct: 149 IM--HKKRMTVCNLS----------RQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMS 196 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 L + + +LP +E + ++ +D+ Sbjct: 197 AEVL-DRTKQAIELLPD-----------FLQPGISEWNKGNITLDNGSTI-------GAY 237 Query: 181 PDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 + ++ DE + P+ +I + ++ I+ + T FY Sbjct: 238 ASSPDAVRGNSFAMIYIDECAFIPNFVDAWLAIQPVISSGRRSK--IIITTTPNGLNHFY 295 Query: 239 DIFNIPLED----------WKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287 DI+ +E W + + D G+ + + E Q Sbjct: 296 DIWTAAIEKKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSKQTISASTLEQFNQEHGAQ 355 Query: 288 FPQQEVNNFIP------HNYIEEA-----MSREAIDDLYAPLIMGCDIA-GEGGDKTVVV 335 F Q I ++IE R D I D + G G D + Sbjct: 356 F-QGTSGTLISGMKLAIMDWIEVMPENGYFYRYKKPDPERKYIASLDCSEGRGQDYHALH 414 Query: 336 FRR 338 Sbjct: 415 IID 417 >gi|238695317|ref|YP_002922510.1| gp17 terminase DNA packaging enzyme, large subunit [Enterobacteria phage JS10] gi|220029453|gb|ACL78387.1| gp17 terminase DNA packaging enzyme, large subunit [Enterobacteria phage JS10] Length = 611 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 46/372 (12%), Positives = 95/372 (25%), Gaps = 65/372 (17%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + R Q + + E +C F + +Q + ++ Sbjct: 93 LKRANIKTQWTREMVSEWK---KCRDDIVYFAETYCAITHIDYGTIKVQ-LRDYQRDMLK 148 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + + + N S R +GKTT+ A + + ++ +A+ + Sbjct: 149 IMSKNRMTTCNLS------------RQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMS 196 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 L + + +LP E + S+ +D+ Sbjct: 197 AEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSI-------GAY 237 Query: 181 PDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 + ++ DE + P+ +I + ++ I+ + T FY Sbjct: 238 ASSPDAVRGNSFAMIYIDECAFIPNFLDSWLAIQPVISSGRRSK--IIITTTPNGLNHFY 295 Query: 239 DIFNIPLED----------WKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287 DI+ +E W + + D G+ + R E + Sbjct: 296 DIWTAAVEGKSGFAPYTAIWNSVKERLYNDADIFDDGWEWSSQTISASSLAQFRQEHCAE 355 Query: 288 FPQQEVNNFIPHNYI----------EEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVVF 336 F R D I D + G G D + Sbjct: 356 FQGTSGTLISGMKLAIMDWKEVIPENGYFYRFHEPDPTHKYIASLDCSEGRGQDYHALHI 415 Query: 337 RRGNIIEHIFDW 348 +W Sbjct: 416 IDVTT----DEW 423 >gi|161622599|ref|YP_001595293.1| gp17 terminase DNA packaging enzyme large subunit [Enterobacteria phage JS98] gi|52139922|gb|AAU29292.1| gp17 terminase DNA packaging enzyme large subunit [Enterobacteria phage JS98] Length = 611 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 46/372 (12%), Positives = 95/372 (25%), Gaps = 65/372 (17%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + R Q + + E +C F + +Q + ++ Sbjct: 93 LKRANIKTQWTREMVSEWK---KCRDDIVYFAETYCAITHIDYGTIKVQ-LRDYQRDMLK 148 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + + + N S R +GKTT+ A + + ++ +A+ + Sbjct: 149 IMSKNRMTTCNLS------------RQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMS 196 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 L + + +LP E + S+ +D+ Sbjct: 197 AEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSI-------GAY 237 Query: 181 PDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 + ++ DE + P+ +I + ++ I+ + T FY Sbjct: 238 ASSPDAVRGNSFAMIYIDECAFIPNFLDSWLAIQPVISSGRRSK--IIITTTPNGLNHFY 295 Query: 239 DIFNIPLED----------WKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287 DI+ +E W + + D G+ + R E + Sbjct: 296 DIWTAAVEGKSGFAPYTAIWNSVKERLYNDADIFDDGWEWSSQTISASSLAQFRQEHCAE 355 Query: 288 FPQQEVNNFIPHNYI----------EEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVVF 336 F R D I D + G G D + Sbjct: 356 FQGTSGTLISGMKLAIMDWKEVIPENGYFYRFHEPDPTHKYIASLDCSEGRGQDYHALHI 415 Query: 337 RRGNIIEHIFDW 348 +W Sbjct: 416 IDVTT----DEW 423 >gi|314121742|ref|YP_004063861.1| large terminase protein [Enterobacteria phage vB_EcoM-VR7] gi|313151499|gb|ADR32555.1| large terminase protein [Enterobacteria phage vB_EcoM-VR7] Length = 610 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 46/363 (12%), Positives = 97/363 (26%), Gaps = 63/363 (17%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + R + ++ + E C F + +Q + +E Sbjct: 93 LKRANIKIKWTKEMVQEWK---RCRDDIVYFAETYCAITHIDYGTIKVQ-LRDYQRDMLE 148 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + H + R +GKTT+ A + + ++ +A+ + Sbjct: 149 IM--HKKRMTVCNLS----------RQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMS 196 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 L + + +LP +E + ++ +D+ Sbjct: 197 AEVL-DRTKQAIELLPD-----------FLQPGISEWNKGNITLDNGSTI-------GAY 237 Query: 181 PDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 + ++ DE + P+ +I + ++ I+ + T FY Sbjct: 238 ASSPDAVRGNSFAMIYIDECAFIPNFVDAWLAIQPVISSGRRSK--IIITTTPNGLNHFY 295 Query: 239 DIFNIPLED----------WKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287 DI+ +E W + + D G+ + + E Q Sbjct: 296 DIWTAAIEKKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSKQTISASTLEQFNQEHGAQ 355 Query: 288 FPQQEVNNFIP------HNYIEEA-----MSREAIDDLYAPLIMGCDIA-GEGGDKTVVV 335 F Q I ++I R D I D + G G D + Sbjct: 356 F-QGTSGTLISGMKLAIMDWIRSMPENGYFYRYKKPDPERKYIASLDCSEGRGQDYHALH 414 Query: 336 FRR 338 Sbjct: 415 IID 417 >gi|16759908|ref|NP_455525.1| prophage terminase large subunit [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142320|ref|NP_805662.1| prophage terminase large subunit [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213583175|ref|ZP_03365001.1| putative prophage terminase large subunit [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213647535|ref|ZP_03377588.1| putative prophage terminase large subunit [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855100|ref|ZP_03383340.1| putative prophage terminase large subunit [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|25512685|pir||AF0621 probable prophage terminase large chain STY1047 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502201|emb|CAD05440.1| putative prophage terminase large subunit [Salmonella enterica subsp. enterica serovar Typhi] gi|29137950|gb|AAO69511.1| putative prophage terminase large subunit [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 467 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 39/271 (14%), Positives = 89/271 (32%), Gaps = 23/271 (8%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GR K+ A + ++ + + C + +++ +++ + + RH F + Sbjct: 30 GGRSSSKSWDAAGFAI-FLANKYSLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRI 88 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + + + + + ++ +EA Sbjct: 89 LNNKIINRV-------------TGSEFVFYGLWR----NIEEIKSLEGIDVLWLEEAHAL 131 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262 + K + + ++I N + + + F P ED +I+ + Sbjct: 132 TEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEDTLIRKINYDENPFLS 189 Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD--LYAPLIM 320 + I + D + G + I ++IE A+ + D + Sbjct: 190 DTMLKVIDAARRRDPEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAHKVLDFGPEGRKRI 249 Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 G D+A G DK V+R G++I +W AK Sbjct: 250 GFDVADSGADKCANVYRYGSVIYWADEWKAK 280 >gi|326536310|ref|YP_004300751.1| gp17 terminase DNA packaging enzyme large subunit [Acinetobacter phage 133] gi|299483391|gb|ADJ19485.1| gp17 terminase DNA packaging enzyme large subunit [Acinetobacter phage 133] Length = 606 Score = 106 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 40/363 (11%), Positives = 88/363 (24%), Gaps = 63/363 (17%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + R + + E +C F + +Q + ++ Sbjct: 89 LKRSNVRTPYTREMIEEWK---KCRDDILYFAETYCAITHIDHGTIKVK-LRDYQRDMLQ 144 Query: 61 AVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119 +D + + R +GKT A + + S+ +A+ + Sbjct: 145 LMDSG-------------RLTCAKLSRQLGKTAAVAIFLAHYVCFNESKSVGILAHKGSM 191 Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 + L+ + + +LP E ++S+ +D+ Sbjct: 192 SEEVLFR-TKQAIELLPD-----------FLQPGIVEWNKRSIELDNGSSIGAF------ 233 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 + ++ DE + D +I + I+ + T F Sbjct: 234 -ASSPDAVRGNSFSLIYIDETAFVQNWDDCWLAIQPVISSG--RHSKIIMTTTPNGMNHF 290 Query: 238 YDIFNIPLEDWKRYQID-----------TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 YD++ + ++ + D G+ + + E LG Sbjct: 291 YDLWQGAINGTSGFRPYEATWVSVKDRLYNEADTFDDGWEFSARAIGSSSIEQFLQEHLG 350 Query: 287 QFPQQEVNNFIPHNYI----------EEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVV 335 F + I D A G G D + Sbjct: 351 NFAGGSNTLIDGTKLAVLFGQERIADQHEFIEFKPPVAGRKYIATLDSAEGRGQDYHALH 410 Query: 336 FRR 338 Sbjct: 411 IID 413 >gi|9632854|ref|NP_049778.1| gp17'B unknown function [Enterobacteria phage T4] gi|5354478|gb|AAD42685.1|AF158101_272 gp17'B unknown function [Enterobacteria phage T4] gi|299780523|gb|ADJ39885.1| gp17'B [Enterobacteria phage T4T] Length = 505 Score = 106 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 38/312 (12%), Positives = 83/312 (26%), Gaps = 59/312 (18%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSI 110 +Q + ++ + + + R +GKTT+ A + + ++ Sbjct: 35 RDYQRDMLKIMS-------------SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAV 81 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 +A+ + L + + +LP E + S+ +D+ Sbjct: 82 GILAHKGSMSAEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSI 129 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTS 228 + ++ DE + P+ +I + ++ I+ + Sbjct: 130 -------GAYASSPDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSK--IIIT 180 Query: 229 NTRRLNGWFYDIFNIPLED----------WKRYQID-TRTVEGIDSGFHEGIISRYGLDS 277 T FYDI+ +E W + + D G+ I + G Sbjct: 181 TTPNGLNHFYDIWTAAVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSSL 240 Query: 278 DVARIEILGQFPQQEVNNFIPHNYI----------EEAMSREAIDDLYAPLIMGCDIA-G 326 R E F + + + I D + G Sbjct: 241 AQFRQEHTAAFEGTSGTLISGMKLAVMDFIEVTPDDHGFHQFKKPEPDRKYIATLDCSEG 300 Query: 327 EGGDKTVVVFRR 338 G D + Sbjct: 301 RGQDYHALHIID 312 >gi|16273317|ref|NP_439561.1| terminase large subunit-like protein [Haemophilus influenzae Rd KW20] gi|1175785|sp|P44184|Y1410_HAEIN RecName: Full=Uncharacterized protein HI_1410 gi|1574247|gb|AAC23058.1| predicted coding region HI1410 [Haemophilus influenzae Rd KW20] Length = 394 Score = 106 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 32/240 (13%), Positives = 73/240 (30%), Gaps = 11/240 (4%) Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 ++ E+ K +S + + + + + ++ + + + + + Sbjct: 1 MFREIQKSISDSVIQMLAD--QIEMLSLQAFFDVQKTQIIGQNGSRFTFA----GLKTNI 54 Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN- 242 T V+ +E ++ E I++ N + + Y F Sbjct: 55 TSIKSMTGIDVVWVEEGENVSKESWDILIPTIREDGSQI--IVSFNPKNILDDTYQRFVI 112 Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302 P E K ++ + E + D ++ R G+ I +I Sbjct: 113 HPPERCKSVLVNWQDNPYFPKELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWI 172 Query: 303 EEAMSREAID--DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360 E A+ +G D+A EG D F G+++ I W + ++ Sbjct: 173 EYAVDAHLKLGFTAKGMKKVGFDVADEGADSNANAFVHGSVVLDIEVWKNGDVIDSANRT 232 >gi|213618708|ref|ZP_03372534.1| putative prophage terminase large subunit [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 282 Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats. Identities = 39/271 (14%), Positives = 89/271 (32%), Gaps = 23/271 (8%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GR K+ A + ++ + + C + +++ +++ + + RH F + Sbjct: 30 GGRSSSKSWDAAGFAI-FLANKYSLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRI 88 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + + + + + ++ +EA Sbjct: 89 LNNKIINRV-------------TGSEFVFYGLWR----NIEEIKSLEGIDVLWLEEAHAL 131 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262 + K + + ++I N + + + F P ED +I+ + Sbjct: 132 TEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEDTLIRKINYDENPFLS 189 Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD--LYAPLIM 320 + I + D + G + I ++IE A+ + D + Sbjct: 190 DTMLKVIDAARRRDPEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAHKVLDFGPEGRKRI 249 Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 G D+A G DK V+R G++I +W AK Sbjct: 250 GFDVADSGADKCANVYRYGSVIYWADEWKAK 280 >gi|299779112|ref|YP_003734306.1| gp17 terminase DNA packaging enzyme large subunit [Enterobacteria phage IME08] gi|298105841|gb|ADI55485.1| gp17 terminase DNA packaging enzyme large subunit [Enterobacteria phage IME08] Length = 611 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 46/372 (12%), Positives = 95/372 (25%), Gaps = 65/372 (17%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + R Q + + E +C F + +Q + ++ Sbjct: 93 LKRANIKTQWSREMVSEWK---KCRDDIVYFAETYCAITHIDYGTIKVQ-LRDYQRDMLK 148 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + + + N S R +GKTT+ A + + ++ +A+ + Sbjct: 149 IMSKNRMTTCNLS------------RQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMS 196 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 L + + +LP E + S+ +D+ Sbjct: 197 AEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSI-------GAY 237 Query: 181 PDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 + ++ DE + P+ +I + ++ I+ + T FY Sbjct: 238 ASSPDAVRGNSFAMIYIDECAFIPNFLDSWLAIQPVISSGRRSK--IIITTTPNGLNHFY 295 Query: 239 DIFNIPLED----------WKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287 DI+ +E W + + D G+ + R E + Sbjct: 296 DIWTAAVEGKSGFAPYTAIWNSVKERLYNDADIFDDGWEWSSQTISASSLAQFRQEHCAE 355 Query: 288 FPQQEVNNFIPHNYI----------EEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVVF 336 F R D I D + G G D + Sbjct: 356 FQGTSGTLISGMKLAIMDWKEVIPENGYFYRFHEPDPTHKYIASLDCSEGRGQDYHALHI 415 Query: 337 RRGNIIEHIFDW 348 +W Sbjct: 416 IDVTT----DEW 423 >gi|161614489|ref|YP_001588454.1| hypothetical protein SPAB_02238 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161363853|gb|ABX67621.1| hypothetical protein SPAB_02238 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 441 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 38/271 (14%), Positives = 88/271 (32%), Gaps = 23/271 (8%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GR K+ A + ++ + + C + +++ +++ + + RH F + Sbjct: 4 GGRSSSKSWDAAGFAI-FLANKYSLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRI 62 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + + + + + ++ +EA Sbjct: 63 LNNKIINRV-------------TGSEFVFYGLWR----NIEEIKSLEGIDVLWLEEAHAL 105 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262 + K + + ++I N + + + F P ED +I+ + Sbjct: 106 TEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEDTLIRKINYDENPFLS 163 Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD--LYAPLIM 320 + I + + G + I ++IE A+ + D + Sbjct: 164 DTMLKVIDAARRRYPEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAHKVLDFGPEGRKRI 223 Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 G D+A G DK V+R G++I +W AK Sbjct: 224 GFDVADSGADKCANVYRYGSVIYWADEWKAK 254 >gi|296117130|ref|ZP_06835723.1| phage terminase, large subunit [Gluconacetobacter hansenii ATCC 23769] gi|295976225|gb|EFG83010.1| phage terminase, large subunit [Gluconacetobacter hansenii ATCC 23769] Length = 404 Score = 105 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 36/264 (13%), Positives = 72/264 (27%), Gaps = 29/264 (10%) Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 P +K GRG GK+ A +++ + + RP + I+C + + +++ +S ++ Sbjct: 18 PARYKILY-GGRGSGKSWTVARVIVAMAAARP-LRILCCREYHSSMADSVRRLLSDQVAA 75 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 L WF ++ + + + Sbjct: 76 LGLGPWFRIR------------------ENLLTTACGSEILFRGLGRNVEAIKSTEKVDI 117 Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY--Q 252 + +EA +L + T N R + + + +D Sbjct: 118 CWVEEAQSLSRASLDILLPTIRAPGSEIW--FTYNPEREDAPMHQMMRALRDDPDAIVRH 175 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + R D D G+ + + + Sbjct: 176 VGWRDNPWFPPELDAERRRMLRHDPDSYDHVWEGECRTRSDAVVFGGHVEVAEFTT---- 231 Query: 313 DLYAPLIMGCDIAGEGGDKTVVVF 336 A L G D G D TV+V Sbjct: 232 PPDARLYFGVD-WGFARDPTVMVR 254 >gi|326536497|ref|YP_004300928.1| gp17 terminase DNA packaging enzyme large subunit [Aeromonas phage 65] gi|312262843|gb|ADQ53099.1| gp17 terminase DNA packaging enzyme large subunit [Aeromonas phage 65] Length = 642 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 44/370 (11%), Positives = 95/370 (25%), Gaps = 74/370 (20%) Query: 10 KLEQELHEMLMHAECVLSFKNFVMRF----FPWGIKGKPLEHFSQPHRWQLEFMEAVDVH 65 ++ + E +C F G+ G L +Q + + + Sbjct: 127 WSQEMVEEWK---KCRDDILYFAKYCAIIHLDHGVIGINL------RPYQKDMLRIMSE- 176 Query: 66 CHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124 + +I R +GKTT + ++ ++ +A+ + + L Sbjct: 177 ------------KRMSIHNLSRQLGKTTATSVYPCHYVTFNEAKNVGILAHKASMSREVL 224 Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184 + + +LP E + S+ +++ Sbjct: 225 ER-TKQIIELLPD-----------FLQPGIVEWNKGSIELENGCAISA-------YSSDP 265 Query: 185 VGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI-- 240 ++ DE + K+IL + N ++TS +N W+ Sbjct: 266 DAVRGNSFALIYVDECGFVEAWEDCWKAILPVISS-GRNSKIVLTSTPNGMNHWYDLWQS 324 Query: 241 -------FNIPLEDWKRYQI--DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291 F +W + + D G + E GQF Sbjct: 325 AINGKSGFEPYEANWSAVKERLYHSETDSFDDGISWTTNQIGSSSVEAFLQEHAGQFM-G 383 Query: 292 EVNNFIPHNYIEEAMSREAI----------DDLYAPLIMGCDIA-GEGGDKTVVVFRRGN 340 I + + + ++ D A G G D + + Sbjct: 384 SAGTLITGFKLSKMTWTDIEATENLYRFKQPEVGHKYFACVDPAEGRGQDYSTIQIIDVT 443 Query: 341 I--IEHIFDW 348 E + + Sbjct: 444 KYPYEQVAVY 453 >gi|310005651|gb|ADP00039.1| DNA maturase beta subunit [Cyanophage 9515-10a] Length = 577 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 49/395 (12%), Positives = 97/395 (24%), Gaps = 84/395 (21%) Query: 23 ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82 + F+ F+ W P P R QL + + + + I Sbjct: 6 QLKDDFRYFLTAV--WTHLALP-----APTRAQL----CIAEYLQNGPK-------RLQI 47 Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 A RG+GK+ + A +LW + I+ ++ S+ + + L + H Sbjct: 48 QAFRGVGKSWITAAFVLWTLYNNSDKKIMVVSASKDRADSFSIFCQRLILEVPWMSHLKP 107 Query: 143 MQSLSLHPS-----------GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191 + G + E P+ + Sbjct: 108 KNDDQRWSRVSFDVGPAAPHQAPSVKSVGITGQLTGSRADLMVLDDVEVPNNSMTELQRE 167 Query: 192 GMAVFNDEASGT--------------PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 + E P W R++ + Sbjct: 168 KLLQLVTECESILTPKKDSRIMFLGTPQTTFTVYNKLRERAYKPFVWPARY-PRKVAMYD 226 Query: 238 YDIFNIPLEDWKRYQIDTRTV--EGIDSGFHEGIISRYGLDSDVARIEILG------QFP 289 + +D T S G + + + + +FP Sbjct: 227 GLLAPQLEKDLNNDSELTWVPTDTRFREEDLLERESAMGRSNFMLQFMLDTSLSDAEKFP 286 Query: 290 QQEVNNFI------------------------------PHNYIEEAMSREAIDDLYAPLI 319 + + I P +Y M + Y+ I Sbjct: 287 LKFADLIINPVNPETAPENIIWCSSKDNILKDLPCVGLPGDYYYSPMQVQGEWKPYSETI 346 Query: 320 MGCDIAGEGGDKTVVVFR-RGNIIEHIFD-WSAKL 352 D +G G D+TV F + N I ++ + +++ Sbjct: 347 CSVDPSGRGSDETVACFISQLNGIMYLHEVYASTD 381 >gi|294508906|ref|YP_003566117.1| hypothetical protein PSR_11004 [Salinibacter ruber M8] gi|294342043|emb|CBH22709.1| conserved hypothetical protein [Salinibacter ruber M8] Length = 255 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 42/260 (16%), Positives = 79/260 (30%), Gaps = 40/260 (15%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P WQ + + + ++ R GKTT +A + L + Sbjct: 8 PDPWQEALLTSDWE--------------RALLNCARQSGKTTASAALALETALEATDSLV 53 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + +A + Q K L + S + P + L L +++ Sbjct: 54 LILAPARRQSKEFLRSVRSLYRDAAPDGGLDKQSELRLRL--------------ENESRI 99 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 I P V DEA+ PD + + S Sbjct: 100 IA-------LPGKEGTVRGYTADLVIADEAARVPDAAYVATRPMLAVTGGRF--VGLSTP 150 Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290 GWFY+ + P ++W++ ++ + + F E G R E + +F Sbjct: 151 AGQRGWFYEAWTDPGQEWEQVKVTGQDCPRMTEAFLEQERREMGD--WQFRSEYMCEF-T 207 Query: 291 QEVNNFIPHNYIEEAMSREA 310 + +IE +++ E Sbjct: 208 DTEDQLFATEHIESSLTSEV 227 >gi|291336835|gb|ADD96368.1| phage terminase large subunit [uncultured organism MedDCM-OCT-S09-C20] Length = 454 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 38/320 (11%), Positives = 91/320 (28%), Gaps = 24/320 (7%) Query: 40 IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMM 98 +P+E P + + + + + + G G GK+ A + Sbjct: 14 EPKRPVERAIDPGAADALRAKILADCLPAQREFLDDESHRILSYIGGFGSGKSFALAAKL 73 Query: 99 LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 ++L PG +++ + ++ L + L + + + + Sbjct: 74 IFLGLRNPGGTLMACEPTFPMIRTVLVPAIDMALDQWDIEYSYRASPQPEYSINLPTGPV 133 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF--T 216 T + + + + A DE +P + Sbjct: 134 ----------------TIYCQSAENYQRIRGQNICAAVWDECDTSPVDTAQKAGEMLLAR 177 Query: 217 ELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275 + ++T W Y F D + ++ T+ + + F + Y Sbjct: 178 MRTGELNQLAVASTPEGFRWAYRTFVENDGPDKRLIRVRTQDNPHLPADFIPSLERNY-- 235 Query: 276 DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335 S + + + G F + P + + + +G D+ G T + Sbjct: 236 PSQLIQAYLEGHFVNLASCSLYP-EFDRSLNYCDTQPTENDTIWIGVDL-NVGNCVTQHL 293 Query: 336 FRRGNIIEHIFDWSAKLIQE 355 RRG+ + + Q+ Sbjct: 294 VRRGDEFHFFAEKVYRDTQQ 313 >gi|85059367|ref|YP_455069.1| putative phage terminase large subunit [Sodalis glossinidius str. 'morsitans'] gi|84779887|dbj|BAE74664.1| putative phage terminase large subunit [Sodalis glossinidius str. 'morsitans'] Length = 264 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 36/269 (13%), Positives = 77/269 (28%), Gaps = 23/269 (8%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 P +K A GRG GK+ A +++ I+ R +C + + +++ ++ + Sbjct: 13 QPHRYKIA-KGGRGSGKSWAIARLLV-EIARRGTYRFLCAREFQASMADSVIQLIADTIQ 70 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + FE+Q + L ++ + Sbjct: 71 REGYLKEFEIQKAYIRHLAATDSLFMFYGIKNNVTKIKS----------------LEGID 114 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253 + +EA ++ + W+ ++ L+ + P +D + Sbjct: 115 IAWVEEAEAVTKESWDILIPTIRKPGSE-IWVSFNSKNILDDTYQRFVVNPPDDICLLTV 173 Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID- 312 + D D+ GQ I +I A+ Sbjct: 174 HYTDNPHFPEVLRLEMEECKCKDYDLYLHIWEGQPVADSDLAIIKPLWIAAAVDAHMTLG 233 Query: 313 -DLYAPLIMGCDIAGEGGDKT--VVVFRR 338 D +G D+A EG T + + Sbjct: 234 FDAVGEKRLGFDVADEGKTATPCALCRAQ 262 >gi|311993161|ref|YP_004010027.1| gp17 terminase DNA packaging enzyme, large subunit [Enterobacteria phage CC31] gi|284177999|gb|ADB81665.1| gp17 terminase DNA packaging enzyme, large subunit [Enterobacteria phage CC31] Length = 610 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 43/363 (11%), Positives = 95/363 (26%), Gaps = 63/363 (17%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + R ++ + E +C F ++ +Q + + Sbjct: 93 LKRANIKTNWTKEMVQEWK---KCRDDIVYFAEKYCAITHIDYGTIKVQ-LRDYQRDMLR 148 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + + T + R +GKTT+ A + + ++ +A+ + Sbjct: 149 IMS--------SKRMTCCNLS----RQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMS 196 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 L + + +LP E + S+ +D+ Sbjct: 197 AEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSI-------GAY 237 Query: 181 PDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 + ++ DE + P+ +I + ++ I+ + T FY Sbjct: 238 ASSPDAVRGNSFAMIYIDECAFIPNFIDAWLAIQPVISSGRRSK--IIITTTPNGLNHFY 295 Query: 239 DIFNIPLED----------WKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287 DI++ L W + + D G+ + + + E + Sbjct: 296 DIWDAALSGKSGFEPYTAIWNSVKERLYNDQDMFDDGWQWSSQTISASSLEQFKQEHCAE 355 Query: 288 FPQQEVNNFIPHNYIEEAMSREAIDD-----------LYAPLIMGCDIA-GEGGDKTVVV 335 F I + E D I D + G G D + Sbjct: 356 FHGTS-GTLISGMKLANMDWTEVTPDNHGFYKFKEAQPERKYIAALDCSEGRGQDYHALH 414 Query: 336 FRR 338 Sbjct: 415 IID 417 >gi|148257070|ref|YP_001241655.1| putative phage terminase large subunit [Bradyrhizobium sp. BTAi1] gi|146409243|gb|ABQ37749.1| putative phage Terminase large subunit [Bradyrhizobium sp. BTAi1] Length = 428 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 37/273 (13%), Positives = 70/273 (25%), Gaps = 27/273 (9%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GRG GK+ +++ G +CI ++ L + + ++ L F Sbjct: 26 GGRGSGKSHFFGELLVETCQAERGTLAVCIREAQRTLAQSSKRLIEGKIAALGLGQGFRP 85 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 S + I R + ++ + DEA Sbjct: 86 FSDRI---------------ATPGDGLIIFRGMQDHTAESIKSL--EGFRIAWIDEAQTL 128 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262 + W N RR + D + + + R + Sbjct: 129 SVRSLSLLRPTIRAPRSE-LWASW-NPRRKSDAVDDFLRSRKPDGAVVVKANWRDNPWLP 186 Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS---REAIDDLYAPLI 319 + E L D G + + + + + D PL Sbjct: 187 AVLDEERRLDLALYPDRYEHIWEGDYVRAFEGAYFADLLAQARREGRIGKVAADPLLPLR 246 Query: 320 MGCDIAGEG--GDKTVVVFRR--GNIIEHIFDW 348 DI G G D + + GN + + + Sbjct: 247 AFIDIGGAGASADAFTIWIVQWVGNEVRVLDYY 279 >gi|32453660|ref|NP_861869.1| large terminase protein [Enterobacteria phage RB69] gi|32350479|gb|AAP76078.1| gp17 terminase DNA packaging enzyme, large subunit [Enterobacteria phage RB69] Length = 611 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 45/367 (12%), Positives = 96/367 (26%), Gaps = 65/367 (17%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + R Q + + E +C F + +Q + ++ Sbjct: 93 LKRANIKTQWTYEMVAEWK---KCRDDIVYFAETYCAITHIDYGTIKVQ-LRDYQRDMLK 148 Query: 61 AVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119 + + + R +GKTT+ A + + ++ +A+ + Sbjct: 149 IMS-------------SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSM 195 Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 L + + +LP E + S+ +D+ Sbjct: 196 SAEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIQLDNGSSI-------GA 236 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 + ++ DE + P+ +I + ++ I+ + T F Sbjct: 237 YASSPDAVRGNSFAMIYIDECAFIPNFIDSWLAIQPVISSGRRSK--IIITTTPNGLNHF 294 Query: 238 YDIFNIPLED----------WKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 YDI+ +E W + + D G+ + R E Sbjct: 295 YDIWTAAVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSKQTISASSLTQFRQEHTA 354 Query: 287 QFPQQEVNNFIP------HNYIE-----EAMSREAIDDLYAPLIMGCDIA-GEGGDKTVV 334 F + I +YIE + + I D + G G D + Sbjct: 355 AF-EGTSGTLISGMKLAILDYIEVTPDSHGFHQFKKPEEGHKYIATLDCSEGRGQDYHAM 413 Query: 335 VFRRGNI 341 Sbjct: 414 HIIDVTT 420 >gi|237745726|ref|ZP_04576206.1| phage terminase [Oxalobacter formigenes HOxBLS] gi|229377077|gb|EEO27168.1| phage terminase [Oxalobacter formigenes HOxBLS] Length = 414 Score = 102 bits (253), Expect = 9e-20, Method: Composition-based stats. Identities = 40/266 (15%), Positives = 82/266 (30%), Gaps = 27/266 (10%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 P +K A GRG GK+ A + + +RP + ++C + +++++ + + Sbjct: 30 FRPYRYKSA-RGGRGSGKSVHFARALTVISYSRP-VRVLCCREVQNTIRDSVHKLIGDQI 87 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 S L WF + S+ S + + + D + T Sbjct: 88 SALGLAPWFRITDSSIKSSVGSEFIFKG-LKYDPQGIKST-----------------EGI 129 Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF--NIPLEDWKR 250 + +E + ++ + N WI N +G Y F P + + Sbjct: 130 DICWVEEGQTVSEESWSILIPTIRKENSE-IWISW-NPIDEDGPTYKRFVTAPPPDCYNA 187 Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310 +++ + + D LG+ Y E + Sbjct: 188 -EVNYYDNPWFPDVLRKEMEYLKATDYAAYEHVWLGKPLTVSDAVIFAGKYTVETF-PDD 245 Query: 311 IDDLYAPLIMGCDIAGEGGDKTVVVF 336 + + L G D G D + +V Sbjct: 246 LWEKADRLFFGADF-GFARDPSALVR 270 >gi|220702377|pdb|3CPE|A Chain A, Crystal Structure Of T4 Gp17 Length = 592 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 41/363 (11%), Positives = 94/363 (25%), Gaps = 63/363 (17%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + R Q + + E +C F + + +Q + ++ Sbjct: 118 LKRANIKTQWTREMVEEWK---KCRDDIVYFAETYCAITHIDYGVIKVQ-LRDYQRDMLK 173 Query: 61 AVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119 + + + R +GKTT+ A + + ++ +A+ + Sbjct: 174 IMS-------------SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSM 220 Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 L + + +LP E + S+ +D+ Sbjct: 221 SAEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSI-------GA 261 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 + ++ ++ + P+ +I + ++ I+ + T F Sbjct: 262 YASSPDAVRGNSFAMIYIEDCAFIPNFHDSWLAIQPVISSGRRSK--IIITTTPNGLNHF 319 Query: 238 YDIFNIPLED----------WKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 YDI+ +E W + + D G+ I + G R E Sbjct: 320 YDIWTAAVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSSLAQFRQEHTA 379 Query: 287 QFPQQEVNNFIPHNYI----------EEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVV 335 F + + + I D + G G D + Sbjct: 380 AFEGTSGTLISGMKLAVMDFIEVTPDDHGFHQFKKPEPDRKYIATLDCSEGRGQDYHALH 439 Query: 336 FRR 338 Sbjct: 440 IID 442 >gi|320091491|gb|ADW08983.1| terminase-like protein [Clavibacter phage CN77] Length = 414 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 66/207 (31%), Gaps = 30/207 (14%) Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222 G ++ R ++ TF G V DEA G P + T + Sbjct: 17 GSGNEAIAFGKRPTDQDIVSTFQGTR-KLRTFVALDEAGGVPPELFTGAEAVMTGQDSKI 75 Query: 223 FWIMTSNTRRLNGWFYDIFNIPL--EDWKRYQIDTRTVEGIDSG---------------- 264 + N F+ IF +P ++W + I + + Sbjct: 76 --VAIGNPDSRGTEFHRIFTVPALMDEWNTFTISAYDLPTVTGEVVYPDHPEKQERMLKG 133 Query: 265 -----FHEGIISRY---GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA 316 + + + G ++LG+FP + N F P I+ D Sbjct: 134 LTSLDWIQHKERVWKVGGKPDGRFLAKVLGEFPGETDNAFFPQEAIDRGNDTTI-DKPEK 192 Query: 317 PLIMGCDIAGEGGDKTVVVFRRGNIIE 343 +IMG D+A G D +VV +G + Sbjct: 193 GIIMGVDLARMGDDDSVVYTNQGGRVR 219 >gi|299531659|ref|ZP_07045064.1| putative phage associated protein [Comamonas testosteroni S44] gi|298720375|gb|EFI61327.1| putative phage associated protein [Comamonas testosteroni S44] Length = 436 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 85/286 (29%), Gaps = 26/286 (9%) Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 P +K + GRG GK+ A ++L + ++RP + ++C + +K ++ Sbjct: 23 EKLAGIWEPKRYKV-MHGGRGGGKSWTVAAVLLVMAASRP-LRVLCTREIQKSIKQSVHQ 80 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 + ++ L +F E+LE + + + S Sbjct: 81 LLKDVITRLNLHAFF--------------EVLETEVRGINGSLFLFSGLQS---HTVDSI 123 Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPL 245 V+ +EA G +++ + + + N Y F P Sbjct: 124 KSFEGCDIVWVEEAHGVSKKSWDTLIPTIRKEGSEIWLTL--NPDMETDETYQRFIATPS 181 Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYG-LDSDVARIEILGQFPQQEVNNFIPHNY--- 301 D +I+ R E + +D G+ + H Sbjct: 182 PDTWVVEINWRDNPWFPRVLDEERRKAKRTMLADDYAHIWEGKARRVAAGAIYRHEMESV 241 Query: 302 IEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347 + +R+ D P+ D+ +V R + I Sbjct: 242 YLDNRARDVPYDPTLPVHTVWDLGWNDAMSIALVQRGPQDVRIIGH 287 >gi|116625333|ref|YP_827489.1| hypothetical protein Acid_6278 [Candidatus Solibacter usitatus Ellin6076] gi|116228495|gb|ABJ87204.1| hypothetical protein Acid_6278 [Candidatus Solibacter usitatus Ellin6076] Length = 260 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 39/270 (14%), Positives = 76/270 (28%), Gaps = 31/270 (11%) Query: 46 EHFSQPH--RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS 103 E P W + + V N+ + ++ R GK+T+ A + Sbjct: 16 EIPQGPEIADWVRGTLGFEADATQARVLNTRSK--RVLLNCTRQWGKSTVTAARAVHEAV 73 Query: 104 TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163 T+ I ++ + Q + E + L E S+ Sbjct: 74 TKADSLTIAVSPTARQTGEFVRK--------------AEAFAGMLKMKVKGDGSNEMSLA 119 Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGM-AVFNDEASGTPDIINKSILGFFTELNPNR 222 + + P T + + DEAS D + ++ Sbjct: 120 FPNGSRIV-------GLPGTEATVRGFSAVALLLVDEASRVEDDLYMAMRPMLAVSGGTL 172 Query: 223 FWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI 282 + + S G+FY+ + W+R + + + E G + R Sbjct: 173 W--LMSTPWGKRGFFYEAWANGGPTWERVSVKAEDCPRFGAEYLEEERRVMGE--RIYRQ 228 Query: 283 EILGQFPQQEVNNFIPHNYIEEAMSREAID 312 E +F + + IE A S + Sbjct: 229 EYCCEFGESSS-AVFDRDLIEAAFSDDFGP 257 >gi|221067857|ref|ZP_03543962.1| phage terminase, large subunit, PBSX family [Comamonas testosteroni KF-1] gi|220712880|gb|EED68248.1| phage terminase, large subunit, PBSX family [Comamonas testosteroni KF-1] Length = 434 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 86/286 (30%), Gaps = 26/286 (9%) Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 +P +K + GRG GK+ A ++L + ++RP + ++C + +K ++ Sbjct: 23 EKLAGIWDPKRYKV-MHGGRGGGKSWTVAAVLLVMAASRP-LRVLCTREIQKSIKQSVHQ 80 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 + ++ L +F E+LE + + + S Sbjct: 81 LLKDVIARLNLHAFF--------------EVLETEVRGINGSLFLFSGLQS---HTVDSI 123 Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPL 245 V+ +EA G +++ + + + N Y F P Sbjct: 124 KSFEGCDIVWVEEAHGVSKKSWDTLIPTIRKEGSEIWLTL--NPDMETDETYQRFIATPC 181 Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYG-LDSDVARIEILGQFPQQEVNNFIPHNY--- 301 D +I+ R E + +D G+ + H Sbjct: 182 PDTWVVEINWRDNPWFPRVLDEERRKAKRTMLADDYAHIWEGKARRVAAGAIYRHEMESV 241 Query: 302 IEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347 + +R+ D P+ D+ +V R + I Sbjct: 242 YLDNRARDVPYDPTLPVHTVWDLGWNDAMSIALVQRGPQDVRIIGH 287 >gi|145638997|ref|ZP_01794605.1| terminase large subunit-like protein [Haemophilus influenzae PittII] gi|145271969|gb|EDK11878.1| terminase large subunit-like protein [Haemophilus influenzae PittII] Length = 379 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 28/210 (13%), Positives = 62/210 (29%), Gaps = 9/210 (4%) Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213 + ++ + + + + + T V+ +E ++ Sbjct: 14 FFDVQKTQIIGQNGSRFTFA----GLKTNITSIKSMTGIDVVWVEEGENVSKESWDILIP 69 Query: 214 FFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGIDSGFHEGIISR 272 E I++ N + + Y F P E K ++ + E + Sbjct: 70 TIREDGSQI--IVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFPKELMEDMEQM 127 Query: 273 YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIMGCDIAGEGGD 330 D ++ R G+ I +IE A+ +G D+A EG D Sbjct: 128 RERDYELYRHVYEGEPVADSDLAIIKPVWIESAVDAHLKLGFTTKGMKKVGFDVADEGAD 187 Query: 331 KTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360 F G+++ + W + ++ Sbjct: 188 ANANAFVHGSVVLGVEVWKNGDVIDSANRT 217 >gi|300922509|ref|ZP_07138621.1| phage terminase large subunit [Escherichia coli MS 182-1] gi|300421167|gb|EFK04478.1| phage terminase large subunit [Escherichia coli MS 182-1] Length = 240 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 69/235 (29%), Gaps = 22/235 (9%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 +K A GRG GK+ A +++ + R + I+C + + +++ + + Sbjct: 13 EAHRYKVA-KGGRGSGKSWAIARLLV-EAARRQPVRILCARELQNSISDSVIRLLEDTIE 70 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + FE+Q + G AE + + + Sbjct: 71 REGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPT-----------------KIKSLEGID 113 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252 + +EA ++ + W+ N + + Y F P +D Sbjct: 114 ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNPPDDICLLT 171 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307 ++ + + + R LG+ I ++E A Sbjct: 172 VNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATD 226 >gi|319404714|emb|CBI78316.1| phage-related protein [Bartonella rochalimae ATCC BAA-1498] Length = 442 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 41/292 (14%), Positives = 78/292 (26%), Gaps = 36/292 (12%) Query: 84 AGRGIGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAEVSKWLSMLP-HR 138 GRG GKT A M + I+C + L + E+ + + P Sbjct: 27 GGRGSGKTRSFALMTAVIGYHHGKAGERGIILCARQFQNSLAESSLEEIKRAIEAYPFLS 86 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 ++E+ + + + R + + D Sbjct: 87 DYYEIGDKYIRSKDGCIVYAFAGLDRNIASVKSMGR-----------------ILLCWVD 129 Query: 199 EASGTPDIINKSILGFFTELNPN---RFWIMTSNTRRLNGWFYDIFNIPLE-DWKRYQID 254 EA D + ++ E W+ N R N F + + K +I+ Sbjct: 130 EAEPVTDAAWQILIPTLREEGKEWHSELWVTW-NPCRENAAVEKRFRFTKDPNIKGVEIN 188 Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314 R + + + + + G++ Q + +E Sbjct: 189 WRDNPKFPAKLNRDRQADLEQRPEQYQHIWEGEYLQAMQGAYYQKLLLEAEQEGRITTVP 248 Query: 315 YAPLI---MGCDIAGEG--GDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC 361 PLI + DI G G D T + + + E + Sbjct: 249 RDPLIQVKIFWDIGGTGAKADATALWVAQ----FVGREIRVLDYYEAQGQPL 296 >gi|259418958|ref|ZP_05742875.1| phage DNA Packaging Protein [Silicibacter sp. TrichCH4B] gi|259345180|gb|EEW57034.1| phage DNA Packaging Protein [Silicibacter sp. TrichCH4B] Length = 478 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 43/296 (14%), Positives = 80/296 (27%), Gaps = 36/296 (12%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134 I GRG GKT A + + + + + Q+++ + S L+ Sbjct: 85 VILGGRGAGKTRAGAEWVRSEVEGAEPFGIGRARRMALVGETYDQVRDVMIHGDSGILAC 144 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 P E ++ T A Sbjct: 145 SPPDRRPEWRAGERRL------------------VWPNGATAQAFSASDPEALRGPQFDA 186 Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252 + DE + + R + T R + P + Sbjct: 187 AWVDELAKWRRAQDAWDMLQFALRLGAAPRVCVT--TTPRNVPLLKQLLESPST-VTTHA 243 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + GF + +RYG S +AR E+ G +E+ R+ Sbjct: 244 PTEANRANLAPGFLTEVRARYGG-SRLARQELDGVMLADVDGALWTSGMLEQLQRRDRPP 302 Query: 313 DLYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC-PVG 364 +++ D A +G D ++ I +W A ++ + +G P G Sbjct: 303 --LDRIVVAVDPSVSAHKGSDACGIIVAGAQTQGPISEWRAYVLADHTVQGLGPTG 356 >gi|148724503|ref|YP_001285469.1| DNA packaging protein [Cyanophage Syn5] gi|145588148|gb|ABP87967.1| DNA packaging protein [Synechococcus phage Syn5] Length = 574 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 55/382 (14%), Positives = 99/382 (25%), Gaps = 83/382 (21%) Query: 18 MLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTI 77 + A+ FK F+ W P +P R QL A+ + Sbjct: 4 EKLEAKMRGDFKFFLSLV--WRELDLP-----KPTRAQL----AIADYLQHGPK------ 46 Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + ISA RG+GK+ + A +LW++ P I+ I+ S+ + N L + Sbjct: 47 -RLQISAFRGVGKSWITAAFVLWVLFVDPDRKIMVISASKERADNFSIFCQKLILDIEWL 105 Query: 138 RHWFEMQSLSLHPSGWYAE-LLEQSMGIDSKHYTITCRTY----------SEERPDTFVG 186 H S + + K IT + E P Sbjct: 106 SHLRPRDSDQRWSRISFDVGPAKPHQAPSVKSVGITGQMTGSRAHLMVFDDVEVPANSAT 165 Query: 187 PHNTHGMAVFNDEASGT--------------PDIINKSILGFFTELNPNRFWIMTSNTRR 232 + E+ P W R Sbjct: 166 DMQREKLLQLVSESESILVPDDDARIMFLGTPQSTFTIYRKLAERSYRPFVWPARY-PRD 224 Query: 233 LNGWFYDIFNIPLEDWKR---YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG--- 286 L+ + + + D ++ + S G + + + + Sbjct: 225 LSKYEGLLAPQLVADLEKDPELTWKPTDT-RFNELNLMERESAMGRSNFMLQFMLDTSLS 283 Query: 287 ---QFPQQEVNNFI-----------------------------PHNYIEEAMSREAIDDL 314 +FP + + + P + M + Sbjct: 284 DAEKFPLKFQDLIVTPLGAECAEAYAWSADPRYMRKELNPVGLPGDRFYGPMYIDEGIVP 343 Query: 315 YAPLIMGCDIAGEGGDKTVVVF 336 Y+ I+ D +G G D+TV V Sbjct: 344 YSETIVSVDPSGRGTDETVAVV 365 >gi|311992670|ref|YP_004009538.1| gp17 terminase DNA packaging enzyme large subunit [Acinetobacter phage Ac42] gi|298684453|gb|ADI96414.1| gp17 terminase DNA packaging enzyme large subunit [Acinetobacter phage Ac42] Length = 619 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 42/362 (11%), Positives = 94/362 (25%), Gaps = 61/362 (16%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + R ++ L E +C F + +Q + ++ Sbjct: 104 LKRANIKTSWTKEMLSEWK---KCRDDIVYFAETYCAITHIDYGTIKVK-LRDYQRDMLQ 159 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + + T K + R +GKT A + + S +A+ + Sbjct: 160 LM--------DGGRLTCCKLS----RQLGKTAAVAIFLAHYVCFNKSKSAGILAHKGSMS 207 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 + L+ + + +LP E ++S+ +D+ Sbjct: 208 EEVLFR-AKQAIELLPD-----------FLQPGIVEWNKRSIELDNGSSI-------GAY 248 Query: 181 PDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 + ++ DE + + +I + I+ + T FY Sbjct: 249 ASSPDAVRGNSFALIYIDETAFIQNWEDCWLAIQPVISSG--RHSKIIMTTTPNGMNHFY 306 Query: 239 DIFNIP---LEDWKRYQIDT--------RTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287 D++ ++ Y+ D G+ + + E LG Sbjct: 307 DLWQGAIKGKSGFRPYEATWVSVKERLYTEAGDFDDGWEFSYRAIGSSSLEQFLQEHLGN 366 Query: 288 FPQQEVNNFIPHNYIE---EAMSREAI-------DDLYAPLIMGCDIA-GEGGDKTVVVF 336 F + + + ++ + I D A G G D + Sbjct: 367 FSGGSNTLIAGPKLVLLEGKKIIPDSYGFYQFETPNPERKYIATLDSAEGRGQDYHALNI 426 Query: 337 RR 338 Sbjct: 427 ID 428 >gi|291335709|gb|ADD95314.1| DNA packaging protein B [uncultured phage MedDCM-OCT-S05-C139] Length = 309 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 40/320 (12%), Positives = 71/320 (22%), Gaps = 47/320 (14%) Query: 27 SFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR 86 FK F+ W P P R Q A+ + S + I A R Sbjct: 11 DFKLFLQAL--WDQLDLP-----SPTRAQ----YAIADYLQSGPK-------RLQIQAFR 52 Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G+GK+ + +LW + P I+ I+ S+ + N + H Sbjct: 53 GVGKSWITGAFVLWTLFNDPEKKIMIISASKERADNMSIFLQKLIIETPWLNHLQPKSDD 112 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTY----------SEERPDTFVGPHNTHGMAVF 196 + K IT + E P + + Sbjct: 113 GRWSRISFDVACSPHQAPSVKSVGITGQLTGSRADLMILDDIEVPGNSMTELMREKLLQL 172 Query: 197 NDEASGT--------------PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242 EA P W R + I Sbjct: 173 CTEAESILTPKDDSRIMYLGTPQTTFTIYRKLAARNYRPFVWTARY-PRNNTPYEGLIAP 231 Query: 243 IPLEDWKRYQIDTR-TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301 ED T + + G + + + + P Sbjct: 232 QLQEDIDNGVTPWTPTDDRFTEDDLVEREASMGRSNFMLQFMLD---TSLSDAEKFPLKM 288 Query: 302 IEEAMSREAIDDLYAPLIMG 321 + ++ + ++ Sbjct: 289 ADLVITSVNPTEAPDNVVWC 308 >gi|238695035|ref|YP_002922229.1| terminase DNA packaging enzyme large subunit [Enterobacteria phage JSE] gi|220029171|gb|ACL78106.1| terminase DNA packaging enzyme large subunit [Enterobacteria phage JSE] Length = 607 Score = 100 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 41/385 (10%), Positives = 101/385 (26%), Gaps = 70/385 (18%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSF--KNFVMRFFPWGIKGKPLEHFSQPHRWQLEF 58 + R Q + + E + ++ F + +G L +Q + Sbjct: 91 LRRANIKTQYTPEMIAEWKRCRKDIVYFAETYCAITHIDYGTIKVQL------RDYQKDM 144 Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 ++ + H + + R +GKTT A + + ++ +A+ + Sbjct: 145 LKIM--HENRMSAHKLS----------RQLGKTTAVAIFLAHYVCFNKDKAVGILAHKGS 192 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 L + + +LP E ++S+ +++ Sbjct: 193 MAVEVLER-TKQAIELLPD-----------FLQPGIVEWNKKSIVLENGSSI-------G 233 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236 + ++ DEA+ +I + ++ + + T Sbjct: 234 AYASSPDAVRGNSFSFIYIDEAAFISAWQDAWLAIQPVISSGRESKL--IMTTTPNGLNH 291 Query: 237 FYDIFNIPLED----------WKRYQIDTRT-VEGIDSGFHEGIISRYGLDSDVARIEIL 285 FYDI+ ++ W + + D G+ + G + E Sbjct: 292 FYDIWQSAIDGKSGYVPYEAVWHSVKERLYNKADIFDDGYEWSSQAIAGSSLEQFLQEHN 351 Query: 286 GQFPQQEVNNFIPHNYI---------EEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVV 335 +F + + + D + G G D + Sbjct: 352 AEFFGSSGTLIRATTLSRLSFIDVVNDNGFYQFEKPKEGRKYVATLDCSEGRGQDYHALQ 411 Query: 336 FRRGNIIEHIFDWSAKLIQETNQEG 360 I ++ K + + Sbjct: 412 IID------ITEFPYKQVAVYHSNT 430 >gi|34419588|ref|NP_899601.1| terminase DNA packaging enzyme large subunit [Vibrio phage KVP40] gi|13661164|dbj|BAB41133.1| gp17v [Bacteriophage KVP40] gi|34333269|gb|AAQ64424.1| terminase DNA packaging enzyme large subunit [Vibrio phage KVP40] Length = 600 Score = 100 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 40/340 (11%), Positives = 81/340 (23%), Gaps = 59/340 (17%) Query: 23 ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82 +C F + P +Q E +E + +I Sbjct: 98 KCRDDIVYFAENYCSIVHIDLGNIKMV-PRPYQKEMLEV-------------ADRSRFSI 143 Query: 83 -SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 R +GKTT+ + + +A+ + L V + LP Sbjct: 144 FLLPRQLGKTTIMGIFLAHYLVFNEDKEAGILAHKGSMSMEVLER-VKNVIENLPD---- 198 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 E + ++ D+ ++ DE + Sbjct: 199 -------FLQPGIEEWNKGNITFDNGCKL-------GAYASGSDAVRGKSFSMIYVDECA 244 Query: 202 GTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY---QIDTR 256 P D K+ + ++TS ++D++N ++ + R Sbjct: 245 FVPGFDDFWKATFPVISS-GEESKVVLTSTPN-GLNHYHDMWNAAVQGISTFEPYTTTWR 302 Query: 257 TVEGIDSGFHE-------GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY-----IEE 304 V+ E + + E L F I+ Sbjct: 303 AVQNRLYKDGEFDDGEAFKRETIGNTSREAFSQEHLCNFLGTAGTLINGFKLSKMKGIDV 362 Query: 305 AMSREA-----IDDLYAPLIMGCDIA-GEGGDKTVVVFRR 338 + + I+ D + G G D + Sbjct: 363 VKDSDGWCVYKKPEEGHKYILTVDTSEGRGQDYHALHMID 402 >gi|116624478|ref|YP_826634.1| hypothetical protein Acid_5400 [Candidatus Solibacter usitatus Ellin6076] gi|116227640|gb|ABJ86349.1| hypothetical protein Acid_5400 [Candidatus Solibacter usitatus Ellin6076] Length = 260 Score = 100 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 37/261 (14%), Positives = 71/261 (27%), Gaps = 29/261 (11%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 W + + V ++ + ++ R GK+T+ A + G I Sbjct: 25 EWARRALGFEADAAQARVLDTRSK--RVLLNCTRQWGKSTVTAARAVHEAVKNAGSLTIA 82 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 + + Q + + L E S+ + + Sbjct: 83 VTPTARQTGEFVRK--------------AATFASGLEMRVKGDGHNEMSLAFPNGSRIV- 127 Query: 173 CRTYSEERPDTFVGPHNTH-GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 P T + DEAS D + ++ + + S Sbjct: 128 ------GLPGTEATVRGFSAVTLLLIDEASRVGDDLYMAMRPMLAVSAGTLW--LMSTPH 179 Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291 G+FY+ + E W+R + + + E G + R E +F + Sbjct: 180 GKRGFFYEAWANGGETWERVSVKAEDCPRFKAEYLEEERQVMGE--RIYRQEYCCEFGET 237 Query: 292 EVNNFIPHNYIEEAMSREAID 312 + IE A S E Sbjct: 238 S-GAVFDRDLIEAAFSDEVTP 257 >gi|21280309|dbj|BAB96804.1| gp17v [Bacteriophage KVP20] Length = 600 Score = 99.6 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 41/340 (12%), Positives = 81/340 (23%), Gaps = 59/340 (17%) Query: 23 ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82 +C F + P +Q E +E + +I Sbjct: 98 KCRDDIVYFAENYCSIVHIDLGNIKMV-PRPYQKEMLEV-------------ADRSRFSI 143 Query: 83 -SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 R +GKTT+ + + +A+ + L V + LP Sbjct: 144 FLLPRQLGKTTIMGIFLAHYLVFNEDKEAGILAHKGSMSMEVLER-VKNVIENLPD---- 198 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 E + ++ D+ ++ DE + Sbjct: 199 -------FLQPGIEEWNKGNITFDNGCKL-------GAYASGSDAVRGKSFSMIYVDECA 244 Query: 202 GTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP---LEDWKRYQIDTR 256 P D K+ + ++TS ++D++N + ++ Y R Sbjct: 245 FVPGFDDFWKATFPVISS-GEESKVVLTSTPN-GLNHYHDMWNAAVAGVSTFEPYTTTWR 302 Query: 257 TVEGIDSGFHE-------GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY-------I 302 V+ E + + E L F I Sbjct: 303 AVQNRLYKDGEFDDGEAFKSETIGNTSREAFSQEHLCNFLGTAGTLINGFKLSKMKGQDI 362 Query: 303 EEAMSREA---IDDLYAPLIMGCDIA-GEGGDKTVVVFRR 338 + + I+ D + G G D + Sbjct: 363 VKDHDGWYVYKQPEENHKYILTVDTSEGRGQDYHALHMID 402 >gi|212499721|ref|YP_002308529.1| terminase [Bacteriophage APSE-2] gi|238898754|ref|YP_002924436.1| APSE-2 prophage; terminase [Bacteriophage APSE-2] gi|211731690|gb|ACJ10178.1| terminase [Bacteriophage APSE-2] gi|229466514|gb|ACQ68288.1| APSE-2 prophage; terminase [Bacteriophage APSE-2] Length = 469 Score = 99.6 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 37/288 (12%), Positives = 81/288 (28%), Gaps = 35/288 (12%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GRG KT A + L S +C+ +++++ A + + L ++ F + Sbjct: 12 GGRGGMKTVSFAKIALITASMHK-RRFLCLREFMNSIEDSVHAVLQAEVETLGLQNRFRI 70 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + + + + H + +EA Sbjct: 71 LNT--------------YIEGINDSIFKYGQLAR--NIASIKSKH--DFDVAWVEEAETV 112 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL------------EDWKRY 251 + +++ + W N +G Y F P +D Sbjct: 113 SEKSLDTLIPTIRKPGSE-LWFSF-NPAEEDGAVYKRFVKPYKAIIDKQGYYEDDDLYVG 170 Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311 ++ + + + R G+ + I ++E A+ Sbjct: 171 KVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANYEDALIQPEWVEAAIDAHIK 230 Query: 312 D--DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETN 357 ++ D A G D+ + R G +IE WS + + Sbjct: 231 LGFKPSGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWSEGDVADAT 278 >gi|211731806|gb|ACJ10127.1| terminase [Bacteriophage APSE-3] Length = 469 Score = 99.6 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 37/288 (12%), Positives = 81/288 (28%), Gaps = 35/288 (12%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GRG KT A + L S +C+ +++++ A + + L ++ F + Sbjct: 12 GGRGGMKTVSFAKIALITASMHK-RRFLCLREFMNSIEDSVHAVLQAEVETLGLQNRFRI 70 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + + + + H + +EA Sbjct: 71 LNT--------------YIEGINDSIFKYGQLAR--NIASIKSKH--DFDVAWVEEAETV 112 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL------------EDWKRY 251 + +++ + W N +G Y F P +D Sbjct: 113 SEKSLDTLIPTIRKPGSE-LWFSF-NPAEEDGAVYKRFVKPYKAIIDKQGYYEDDDLYVG 170 Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311 ++ + + + R G+ + I ++E A+ Sbjct: 171 KVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANYEDALIQPEWVEAAIDAHIK 230 Query: 312 D--DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETN 357 ++ D A G D+ + R G +IE WS + + Sbjct: 231 LGFKPSGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWSEGDVADAT 278 >gi|211731737|gb|ACJ10086.1| terminase [Bacteriophage APSE-5] Length = 469 Score = 99.6 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 37/288 (12%), Positives = 81/288 (28%), Gaps = 35/288 (12%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GRG KT A + L S +C+ +++++ A + + L ++ F + Sbjct: 12 GGRGGMKTVSFAKIALITASMHK-RRFLCLREFMNSIEDSVHAVLQAEVETLGLQNRFRI 70 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + + + + H + +EA Sbjct: 71 LNT--------------YIEGINDSIFKYGQLAR--NIASIKSKH--DFDVAWVEEAETV 112 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL------------EDWKRY 251 + +++ + W N +G Y F P +D Sbjct: 113 SEKSLDTLIPTIRKPGSE-LWFSF-NPAEEDGAVYKRFVKPYKELIDTQGYYEDDDLYVG 170 Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311 ++ + + + R G+ + I ++E A+ Sbjct: 171 KVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANYEDALIQPEWVEAAIDAHIK 230 Query: 312 D--DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETN 357 ++ D A G D+ + R G +IE WS + + Sbjct: 231 LGFKPSGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWSEGDVADAT 278 >gi|291336431|gb|ADD95986.1| hypothetical protein Ddes_0719 [uncultured organism MedDCM-OCT-S04-C1073] Length = 311 Score = 99.2 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 34/269 (12%), Positives = 75/269 (27%), Gaps = 41/269 (15%) Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161 ++ + IA + Q K+ W + ++ + +P+ + E Sbjct: 1 MTKKKNPRYAYIAPTFKQAKSIAWDYMKQFTAKIPN-----------------TKFNETE 43 Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNP 220 + +D + + G + DE + + + I + + Sbjct: 44 LRVD----LPNGSRITLLGAENSDGLRGIYLDGCVIDEYANIDGKLFAEIIRPALS--DR 97 Query: 221 NRFWIMTSNTRRLNGWFYDIFNIP--LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278 + + +N FYD++ EDW Y+ + +D E G Sbjct: 98 KGYCVFIGTPAGMNNNFYDLYQHANGAEDWFNYKAKASDTKIVDPEELEKAKEVMGEKK- 156 Query: 279 VARIEILGQFPQQEVNNFIPHNYI---EEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335 E + ++ D P+ D+ D + ++ Sbjct: 157 -YLQEFECDWIANIEGAIYGEEIAKIEDKNQIARVPYDPTLPVSTAWDLGV--ADHSSII 213 Query: 336 FRR--GNIIEHIFDWSAKLIQETNQEGCP 362 F + G ++ I E G P Sbjct: 214 FFQQKGTGVQII------DYHEERGHGLP 236 >gi|29366753|ref|NP_813693.1| gp33 [Streptomyces phage phiBT1] gi|29243073|emb|CAD80101.1| gp33 [Streptomyces phage phiBT1] Length = 527 Score = 99.2 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 40/314 (12%), Positives = 80/314 (25%), Gaps = 28/314 (8%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG---MS 109 WQ + + R GK+T+ A +ML+ + G Sbjct: 54 PWQRTLLIDAYELTQDTFGRWRRKHRTVVVCVARKNGKSTIAAAIMLYHLIADRGDAQRQ 113 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWF-EMQSLSLHPSGWYAELLEQSMGIDSK- 167 +I AN Q + ++ + ++ P +Q + ++ G Sbjct: 114 VIAAANDRNQAR-MVFDSAKQMVNASPKLAAVCNVQRDVIRYKDNTYRVVSADAGRQQGL 172 Query: 168 -------HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220 ++ T M + A PD E Sbjct: 173 NPAAVSLDEYAFSKSSDLFDALTLGSAARNQPMFLIISTAGPDPDGPF----AALCEQGE 228 Query: 221 NRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT---VEGIDSGFHEGIISRYGLDS 277 + FY + L + + D + + + Sbjct: 229 RVNSGEADDPT----LFYRSWGPKLGETVDHLDPEVWARCNPSYDILNPDDFKAAAQRST 284 Query: 278 DV-ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVV-- 334 + RI L QF + + A + + ++ G D + +G D T + Sbjct: 285 EASFRIYRLSQFVRGASTWLPHGLWDSLAADDDDPLEPGDEVVCGFDGSWKG-DSTALVA 343 Query: 335 VFRRGNIIEHIFDW 348 R + + W Sbjct: 344 CRVRDLRVFVLGHW 357 >gi|240140465|ref|YP_002964944.1| Phage terminase, large subunit, PBSX [Methylobacterium extorquens AM1] gi|240010441|gb|ACS41667.1| Phage terminase, large subunit, PBSX [Methylobacterium extorquens AM1] Length = 422 Score = 99.2 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 80/303 (26%), Gaps = 32/303 (10%) Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 +K + GRG K+ A ++ +T+P M ++C + + + Sbjct: 4 EFPEKLAFLFESHRYKV-LHGGRGGSKSWGAARALIIQAATKP-MRVLCAREFQNSINES 61 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 + +S + L R FE+Q + + I +S R Sbjct: 62 VHQLLSNQIEELGLRSAFEIQDKRI--------------IGLNGSEFI----FSGLRHKI 103 Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN- 242 + +EA + ++ + + +T N Y F Sbjct: 104 DSLKSTEGIDVCWVEEAQTVSNASWSKLIPTIRKDGSEIW--VTFNPELDTDPTYQRFVV 161 Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302 P D K +++ D D G Q Sbjct: 162 NPPADAKVVRLNWSDNPWFPEVLRREKDELAARDPDAYLNVWEGATRQTLDGAVYAKEMR 221 Query: 303 EEAMS---REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359 E A D P+ D+ D T + F + ++ E +Q Sbjct: 222 EAAAEGRIGRVQYDRTKPVHTAWDLGW--ADCTSIWFAQAVG----GEFRVIDFLEVSQR 275 Query: 360 GCP 362 P Sbjct: 276 AIP 278 >gi|315426011|dbj|BAJ47659.1| prophage MuMc02, terminase, ATPase subunit [Candidatus Caldiarchaeum subterraneum] Length = 439 Score = 98.9 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 57/305 (18%), Positives = 98/305 (32%), Gaps = 36/305 (11%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 H WQ F++ P+ F+ I RG G T A T P +I+ Sbjct: 22 HPWQKRFIDD-------------PSRFRI-ILKHRGAGATFTIAAEACAEALTHPASTIL 67 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 I+ S Q + V LS L ++ + + I ++ + Sbjct: 68 LISYSLRQSLEI-FRHVRTILSRLENKRLKH-----------GHSIYRLAAKIGARTVEL 115 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 + P+ AV+ DEA+ N FT + N + S + Sbjct: 116 GNGSRIISLPNNPESLRGYRADAVYVDEAAFFRGDTNLKTAIMFTTVARNGRVTLVSTPK 175 Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291 GWF++ + W ++ + I E + R E++ +F + Sbjct: 176 GKRGWFHEAWTTD-NTWSKHLVKLGDSPHITMHDLEELRKTMS--PLEWRQEMMCEFLDE 232 Query: 292 EVNNFIPHNYIEEAMSREAI-DDLYAPLIMGCDIAGEGGDKTVV--VFRRGNIIEH--IF 346 N FIP+ I E + + + +G D D TV+ V G + Sbjct: 233 V-NAFIPYEKILECVEDYVPARVVGGRVYVGVDFGRF-RDSTVIIAVVEDGERFRVCYVE 290 Query: 347 DWSAK 351 + K Sbjct: 291 ELRQK 295 >gi|291335422|gb|ADD95035.1| phage terminase large subunit [uncultured phage MedDCM-OCT-S04-C26] Length = 446 Score = 98.9 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 52/320 (16%), Positives = 99/320 (30%), Gaps = 34/320 (10%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 E ++ + H + +SAG G GKT M + L + G + Sbjct: 25 ELLDRIRADLHPPQQQFFDNQNEIVGLSAGYGAGKTRALCSMAVKLAAQNIGFIGAVMEP 84 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 + +++ + +L + F L + +M + CR+ Sbjct: 85 TAPLIRDIWQTDFELFLEQYEIPYTFRASPLPEY-----------TMHFKEGDSKLLCRS 133 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTR 231 + + + + V DE D ILG N +F +T Sbjct: 134 F-----ENWSRIIGLNLSHVLVDEIDVVSPVIADKAFPKILGRLRAGNVRQFCAA--STP 186 Query: 232 RLNGWFYDIFNIP----LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287 W Y+ F D + ++ T+ + S F E + + Y D + + + G+ Sbjct: 187 EGFRWLYNTFGTDEAKERTDRELIKMRTQDNPHLPSDFIERMQANY--DPSMLQAYLNGE 244 Query: 288 FPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347 F E M+ D PL +G D G V+ + + + Sbjct: 245 FINLTTGQVYDRFTRENNMTNIKPDIGLEPLRVGLDF-NIGNMNAVIGIVQDQKLLIFDE 303 Query: 348 WSA----KLIQETNQEGCPV 363 S + +T + P+ Sbjct: 304 ISGSHDTDSLAQTIKSRYPM 323 >gi|319409256|emb|CBI82900.1| phage-related protein [Bartonella schoenbuchensis R1] Length = 441 Score = 98.5 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 75/291 (25%), Gaps = 34/291 (11%) Query: 84 AGRGIGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 GRG GKT A M + I+C + L + E+ + + Sbjct: 27 GGRGSGKTRSFALMSAVVGYRHGKAGERGIILCARQFQNSLNESSLEEIKRAIESY---- 82 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 +Y + D + + + + DE Sbjct: 83 --------SFLRDYYEIGDKYVRSKDGRIIYAFAGLDR----NIASIKSMGRILLCWVDE 130 Query: 200 ASGTPDIINKSILGFFTELNPN---RFWIMTSNTRRLNGWFYDIFNIPLEDW-KRYQIDT 255 A + ++++ E N W+ N R N F + K +I+ Sbjct: 131 AEPVTETAWQTLIPTLREEGENWHCELWVTW-NPLRENAPVEKRFRAVKDPHIKGVEINW 189 Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY 315 R + + + + G++ Q + +E Sbjct: 190 RDNPQFPDRLNRAREADFTQRPEQYNHIWEGEYLQAVQGAYYQKLLLEAEQEGRITHVPR 249 Query: 316 APLI---MGCDIAGEG--GDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC 361 PLI + DI G G D T + + + E + Sbjct: 250 DPLIQIKIFWDIGGTGAKADATALWVAQ----FIGREIRVLDYYEAQGQPL 296 >gi|33620526|ref|NP_891724.1| terminase DNA packaging enzyme large subunit [Enterobacteria phage RB49] gi|33347993|gb|AAQ15394.1| terminase DNA packaging enzyme large subunit [Enterobacteria phage RB49] Length = 607 Score = 98.5 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 42/385 (10%), Positives = 100/385 (25%), Gaps = 70/385 (18%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSF--KNFVMRFFPWGIKGKPLEHFSQPHRWQLEF 58 + R Q + + E + ++ F + +G L +Q + Sbjct: 91 LRRANIKTQYTPEMIAEWKRCRKDIVYFAETYCAITHIDYGTIKVQL------RDYQKDM 144 Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 ++ + H + + R +GKTT A + + ++ +A+ + Sbjct: 145 LKIM--HENRMSAHKLS----------RQLGKTTAVAIFLAHYVCFNKDKAVGILAHKGS 192 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 L + + +LP E ++S+ +++ Sbjct: 193 MAVEVLER-TKQAIELLPD-----------FLQPGIVEWNKKSIVLENGSSI-------G 233 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGW 236 + ++ DE + + +I + IMT+ Sbjct: 234 AYASSPDAVRGNSFSFIYIDECAFIQNWTDCFLAIQPVISS-GRESKMIMTTTPN-GLNH 291 Query: 237 FYDIFNIPLED----------WKRYQIDTRT-VEGIDSGFHEGIISRYGLDSDVARIEIL 285 FYDI+ ++ W + + D G+ + G + E Sbjct: 292 FYDIWQSAIDGKSGYVPYEAVWHSVKERLYNKADIFDDGYEWSSQAIAGSSLEQFLQEHN 351 Query: 286 GQFPQQEVNNFIPHNYI---------EEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVV 335 +F + + + D + G G D + Sbjct: 352 AEFFGSSGTLIRATTLSRLSFIDVVNDNGFYQFEKPKEGRKYVATLDCSEGRGQDYHALQ 411 Query: 336 FRRGNIIEHIFDWSAKLIQETNQEG 360 I ++ K + + Sbjct: 412 IID------ITEFPYKQVAVYHSNT 430 >gi|6685017|gb|AAF23757.1|AF203974_1 terminase large subunit [Enterobacteria phage RB49] Length = 607 Score = 98.5 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 42/385 (10%), Positives = 100/385 (25%), Gaps = 70/385 (18%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSF--KNFVMRFFPWGIKGKPLEHFSQPHRWQLEF 58 + R Q + + E + ++ F + +G L +Q + Sbjct: 91 LRRANIKTQYTPEMIAEWKRCRKDIVYFAETYCAITHIDYGTIKVQL------RDYQKDM 144 Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 ++ + H + + R +GKTT A + + ++ +A+ + Sbjct: 145 LKIM--HENRMSAHKLS----------RQLGKTTAVAIFLAHYVCFNKDKAVGILAHKGS 192 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 L + + +LP E ++S+ +++ Sbjct: 193 MAVEVLER-TKQAIELLPD-----------FLQPGIVEWNKKSIVLENGSSI-------G 233 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGW 236 + ++ DE + + +I + IMT+ Sbjct: 234 AYASSPDAVRGNSFSFIYIDECAFIQNWTDCFLAIQPVISS-GRESKMIMTTTPN-GLNH 291 Query: 237 FYDIFNIPLED----------WKRYQIDTRT-VEGIDSGFHEGIISRYGLDSDVARIEIL 285 FYDI+ ++ W + + D G+ + G + E Sbjct: 292 FYDIWQSAIDGKSGYVPYEAVWHSVKERLYNKADIFDDGYEWSSQAIAGSSLEQFLQEHN 351 Query: 286 GQFPQQEVNNFIPHNYI---------EEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVV 335 +F + + + D + G G D + Sbjct: 352 AEFFGSSGTLIRATTLSRLSFIDVVNDNGFYQFEKPKEGRKYVATLDCSEGRGQDYHALQ 411 Query: 336 FRRGNIIEHIFDWSAKLIQETNQEG 360 I ++ K + + Sbjct: 412 IID------ITEFPYKQVAVYHSNT 430 >gi|9633565|ref|NP_050979.1| P18 [Acyrthosiphon pisum bacteriophage APSE-1] gi|6118013|gb|AAF03961.1|AF157835_18 P18 [Endosymbiont phage APSE-1] Length = 469 Score = 98.1 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 38/288 (13%), Positives = 80/288 (27%), Gaps = 35/288 (12%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GRG KT A + L S +C+ ++++ A + + L ++ F + Sbjct: 12 GGRGGMKTVSFAKIALITASMHK-RRFLCLREFMNSIEDSGHAVLQAEVETLGLQNRFRI 70 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + + + + H + +EA Sbjct: 71 LNT--------------YIEGINDSIFKYGQLAR--NIASIKSKH--DFDVAWVEEAETV 112 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL------------EDWKRY 251 + S++ + W N +G Y F P +D Sbjct: 113 SEKSLDSLIPTIRKPGSE-LWFSF-NPAEEDGAVYKRFVKPYKELIDTQGYYEDDDLYVG 170 Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311 ++ + + + R G+ + I ++E A+ Sbjct: 171 KVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANYEDALIQPEWVEAAIDAHIK 230 Query: 312 D--DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETN 357 ++ D A G D+ + R G +IE WS + + Sbjct: 231 LGFKPSGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWSEGDVADAT 278 >gi|319406198|emb|CBI79835.1| phage-related protein [Bartonella sp. AR 15-3] Length = 442 Score = 98.1 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 75/291 (25%), Gaps = 34/291 (11%) Query: 84 AGRGIGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 GRG GKT A M + I+C + L + E+ + + Sbjct: 27 GGRGSGKTRSFALMTAVIGYRHGKTGERGIILCARQFQNSLAESSLEEIKRAIESY---- 82 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 S +Y + D + + + + DE Sbjct: 83 --------SFLSDYYEVGDKYIRSKDGRIVYAFAGLDR----NIASVKSMGRILLCWVDE 130 Query: 200 ASGTPDIINKSILGFFTELNPN---RFWIMTSNTRRLNGWFYDIFNIPLE-DWKRYQIDT 255 A D + ++ E W+ N R N F + + K +I+ Sbjct: 131 AEPVTDAAWQVLIPTLREEGKEWHSELWVTW-NPCRENAAVEKRFRFTKDPNIKGVEINW 189 Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY 315 R + + + + + G++ + +E Sbjct: 190 RDNPKFPAKLNRDRTADLEQRPEQYQHIWEGEYLLAMQGAYYQKLLLEAEQEGRITTVPR 249 Query: 316 APLI---MGCDIAGEG--GDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC 361 PLI + DI G G D T + + + E + Sbjct: 250 DPLIQVKIFWDIGGTGAKADATALWVAQ----FVGREIRVLDYYEAQGQPL 296 >gi|239502629|ref|ZP_04661939.1| hypothetical protein AbauAB_09982 [Acinetobacter baumannii AB900] Length = 414 Score = 98.1 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 39/271 (14%), Positives = 81/271 (29%), Gaps = 38/271 (14%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + +H + F+ + AGR GKT+L + ++ S +P I +A + Sbjct: 6 RLSLHPKQMEVYLSNARFRVVV-AGRRWGKTSL-SRTLIISKSRKPRQRIWYVAPTYRMA 63 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 K +W ++ + + P W ++ S+ I+ + + Sbjct: 64 KQIMWKDLIEAI-----------------PRKWVVKINHSSLSIE----LVNGTLIELKG 102 Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239 D + DE + + + + T + Y Sbjct: 103 ADDPDSLRGVGIDFLVLDEFQDISEEAWTQCLRPTLASTGG---HAIFIGTPKAYNQLYT 159 Query: 240 IFNIPLE-------DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292 ++ + W+ +Q T T I E + S + E L F Sbjct: 160 VYMQGQDPKKVKAGQWQSWQFPTITSPFIPESEIEAARADMDEKS--FKQEFLASFETMS 217 Query: 293 VNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323 + P + + + D P+ +G D Sbjct: 218 GRVYYPFD--RKEHVGKYPFDPKLPIWIGMD 246 >gi|319899324|ref|YP_004159421.1| hypothetical protein BARCL_1179 [Bartonella clarridgeiae 73] gi|319403292|emb|CBI76851.1| phage-related protein [Bartonella clarridgeiae 73] Length = 442 Score = 98.1 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 41/292 (14%), Positives = 79/292 (27%), Gaps = 36/292 (12%) Query: 84 AGRGIGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAEVSKWLSMLP-HR 138 GRG GKT A M + I+C + L + E+ + + P Sbjct: 27 GGRGSGKTRSFALMTAVIGYRHGKAGERGIILCARQFQNSLAESSLEEIKRAIESYPFLS 86 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 ++E+ + + + R + + D Sbjct: 87 DYYEVGDKYIRSKDGCIVYAFAGLDRNIASVKSMGR-----------------ILLCWVD 129 Query: 199 EASGTPDIINKSILGFFTELNP---NRFWIMTSNTRRLNGWFYDIFNIPLE-DWKRYQID 254 EA D + ++ E + W+ N R N F + + K +I+ Sbjct: 130 EAEPVTDAAWQILIPTLREEGKDWHSELWVTW-NPCRENAAVEKRFRFTKDPNVKGVEIN 188 Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314 R + + + + + G++ Q + +E Sbjct: 189 WRDNPKFPAKLNRDRKADLEQRPEQYQYIWEGEYLQAMQGAYYQKLLLEAEQEGRITKVP 248 Query: 315 YAPLI---MGCDIAGEG--GDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC 361 PLI + DI G G D T + + + E + Sbjct: 249 RDPLIQIKIFWDIGGTGAKADATALWVAQ----FVGREIRVLDYYEAQGQPL 296 >gi|37651634|ref|NP_932508.1| gp17 [Aeromonas phage 44RR2.8t] gi|34732934|gb|AAQ81472.1| terminase DNA packaging enzyme large subunit [Aeromonas phage 44RR2.8t] Length = 613 Score = 98.1 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 46/398 (11%), Positives = 101/398 (25%), Gaps = 82/398 (20%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + R + ++ L E C F + + +Q + + Sbjct: 84 LKRANIKIKWTKEMLAERK---RCKEDIVYFAENYCCIEHIDYGIIRVQ-LRDYQKDMLR 139 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + + N S R +GKTT+ A + + ++ +A+ + Sbjct: 140 IMAGNRLMAANLS------------RQLGKTTVVAIFLAHFVCFNSAKNVGILAHKASMS 187 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 L + L +LP E + S+ + + + Sbjct: 188 AEVLHR-TKQALELLPD-----------FLQPGIVEWNKGSITLGNGCAIGAFSS----- 230 Query: 181 PDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 + ++ DE + P+ +I + ++ I+ + T +Y Sbjct: 231 --SPDAVRGNSFALIYVDEVAFIPNFTDAWMAIQPVISSGRRSK--ILMTTTPNGLNHWY 286 Query: 239 DIFNIP----------LEDWKRYQIDTRTVEGIDSGFHEGI---------------ISRY 273 DI+ + Y +V+ + + + Sbjct: 287 DIWTAAITPNSSGDGSKSGFVPYTATWSSVKERLYSDGKELSGSDSYFDDGYSWSSKTIA 346 Query: 274 GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA----------IDDLYAPLIMGCD 323 G D + E F Q I + + + I D Sbjct: 347 GSALDAFQQEHNTAF-QGTSGTLINGTKLSKLNWIDIPPQDNFTMFEEPKEGRKYIATLD 405 Query: 324 IA-GEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360 A G G D + I ++ K + + Sbjct: 406 SAEGRGQDYHAMHIFD------ITEFPYKQVAVYHSNT 437 >gi|291334706|gb|ADD94352.1| hypothetical protein Ddes_0719 [uncultured phage MedDCM-OCT-S04-C890] Length = 311 Score = 97.7 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 35/269 (13%), Positives = 74/269 (27%), Gaps = 41/269 (15%) Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161 +S IA + Q K+ W + ++ + +P+ + E Sbjct: 1 MSKLKNPRFAYIAPTFKQAKSIAWDYMKQFTAKIPN-----------------TKFNETE 43 Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNP 220 + +D + + G + DE + + + I + + Sbjct: 44 LRVD----LPNGSRITLLGAENSDGLRGIYLDGCVIDEYANIDGKLFAEIIRPALS--DR 97 Query: 221 NRFWIMTSNTRRLNGWFYDIFNIP--LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278 + + +N FYD++ EDW Y+ + +D E G Sbjct: 98 KGYCVFIGTPAGMNNNFYDLYQHANGAEDWFNYKAKASDTKIVDPEELEKAKEVMGEKK- 156 Query: 279 VARIEILGQFPQQEVNNFIPHNYI---EEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335 E + ++ D P+ D+ D + ++ Sbjct: 157 -YLQEFECDWIANIEGAIYGEEIAKIEDKNQIARVPYDPTLPVSTAWDLGV--ADHSSII 213 Query: 336 FRR--GNIIEHIFDWSAKLIQETNQEGCP 362 F + G ++ I E G P Sbjct: 214 FFQQKGTGVQII------DYHEERGHGLP 236 >gi|157311455|ref|YP_001469498.1| large terminase protein [Enterobacteria phage Phi1] gi|149380659|gb|ABR24664.1| gp17 terminase DNA packaging enzyme large subunit [Enterobacteria phage Phi1] Length = 607 Score = 97.7 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 42/385 (10%), Positives = 100/385 (25%), Gaps = 70/385 (18%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSF--KNFVMRFFPWGIKGKPLEHFSQPHRWQLEF 58 + R Q + + E + ++ F + +G L +Q + Sbjct: 91 LRRANIKTQYTPEMIAEWKRCRKDIVYFAETYCAITHIDYGTIKVQL------RDYQKDM 144 Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 ++ + H + + R +GKTT A + + ++ +A+ + Sbjct: 145 LKIM--HENRMSAHKLS----------RQLGKTTAVAIFLAHYVCFNKDKAVGILAHKGS 192 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 L + + +LP E ++S+ +++ Sbjct: 193 MAVEVLER-TKQAIELLPD-----------FLQPGIVEWNKKSIVLENGSSI-------G 233 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGW 236 + ++ DE + + +I + IMT+ Sbjct: 234 AYASSPDAVRGNSFSFIYIDECAFIQNWTDCFLAIQPVISS-GRESKMIMTTTPN-GLNH 291 Query: 237 FYDIFNIPLED----------WKRYQIDTRT-VEGIDSGFHEGIISRYGLDSDVARIEIL 285 FYDI+ ++ W + + D G+ + G + E Sbjct: 292 FYDIWQSAIDGKSGYVPYEAVWHSVKERLYNKADIFDDGYEWSSQAIAGSSLEQFLQEHN 351 Query: 286 GQFPQQEVNNFIPHNYI---------EEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVV 335 +F + + + D + G G D + Sbjct: 352 AEFFGSSGTLIRATTLSRLSFIDVVNDNGFYQFEKPKEGRKYVATLDCSEGRGQDYHALQ 411 Query: 336 FRRGNIIEHIFDWSAKLIQETNQEG 360 I ++ K + + Sbjct: 412 IID------ITEFPYKPVAVYHSNT 430 >gi|66391955|ref|YP_238880.1| gp17 [Aeromonas phage 31] gi|62114792|gb|AAX63640.1| gp17 [Aeromonas phage 31] Length = 613 Score = 97.7 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 46/398 (11%), Positives = 101/398 (25%), Gaps = 82/398 (20%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + R + ++ L E C F + + +Q + + Sbjct: 84 LKRANIKIKWTKEMLAERK---RCKEDIVYFAENYCCIEHIDYGIIRVQ-LRDYQKDMLR 139 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + + N S R +GKTT+ A + + ++ +A+ + Sbjct: 140 IMAGNRLMAANLS------------RQLGKTTVVAIFLAHFVCFNSAKNVGILAHKASMS 187 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 L + L +LP E + S+ + + + Sbjct: 188 AEVLHR-TKQALELLPD-----------FLQPGIVEWNKGSITLGNGCAIGAFSS----- 230 Query: 181 PDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 + ++ DE + P+ +I + ++ I+ + T +Y Sbjct: 231 --SPDAVRGNSFALIYVDEVAFIPNFTDAWMAIQPVISSGRRSK--ILMTTTPNGLNHWY 286 Query: 239 DIFNIP----------LEDWKRYQIDTRTVEGIDSGFHEGI---------------ISRY 273 DI+ + Y +V+ + + + Sbjct: 287 DIWTAAITPNSSGDGSKSGFVPYTATWSSVKERLYSDGKELSGSDSYFDDGYSWSSKTIA 346 Query: 274 GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA----------IDDLYAPLIMGCD 323 G D + E F Q I + + + I D Sbjct: 347 GSALDAFQQEHNTAF-QGTSGTLINGTKLSKLNWIDIPPQDNFTMFEEPKEGRKYIATLD 405 Query: 324 IA-GEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360 A G G D + I ++ K + + Sbjct: 406 SAEGRGQDYHAMHIFD------ITEFPYKQVAVYHSNT 437 >gi|311992925|ref|YP_004009792.1| gp17 terminase DNA packaging enzyme large subunit [Acinetobacter phage Acj61] gi|295815214|gb|ADG36140.1| gp17 terminase DNA packaging enzyme large subunit [Acinetobacter phage Acj61] Length = 611 Score = 97.7 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 44/367 (11%), Positives = 96/367 (26%), Gaps = 69/367 (18%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSF--KNFVMRFFPWGIKGKPLEHFSQPHRWQLEF 58 + R ++ + E + V+ F + + +G+ L +Q + Sbjct: 94 LKRANIKIMWTQEMIDEWKRCRDDVVYFAERYCAITHIDYGVIKVQL------RDYQKDM 147 Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 + + + + ++S R +GKTT A + + S+ +A+ Sbjct: 148 LRIMSGN-------------RMSVSKLSRQLGKTTAVAIFLAHYVCFNKAKSVGILAHKG 194 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177 + L + + +LP E + ++ +D+ Sbjct: 195 SMSAEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGNITLDNGSSI------- 235 Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 + ++ DE + + +I + I+ + T Sbjct: 236 GAYASSPDAVRGNSFSLIYIDEVAFVQNWEDCWLAIQPVISSG--RHSKIVMTTTPNGMN 293 Query: 236 WFYDIFNIP----------LEDWKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 FY I+ +W + + D G+ + YG + R E Sbjct: 294 HFYTIWTAAVGKKSGFIPYESEWNAVKERLYDDNDEFDDGWSFSSKAIYGSSVEQFRQEH 353 Query: 285 LGQFPQQEVNNFIPHNY------------IEEAMSREAIDDLYAPLIMGCDIA-GEGGDK 331 G F + + I D A G G D Sbjct: 354 KGVFSGGSGTLISGMKLSVLDHSEPININDDNTFFKFKEPSPERKYIATLDSAEGRGQDY 413 Query: 332 TVVVFRR 338 + Sbjct: 414 HSLNIID 420 >gi|303257560|ref|ZP_07343572.1| putative terminase B protein [Burkholderiales bacterium 1_1_47] gi|302859530|gb|EFL82609.1| putative terminase B protein [Burkholderiales bacterium 1_1_47] Length = 330 Score = 97.7 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 56/174 (32%), Gaps = 15/174 (8%) Query: 191 HGMAVFNDEASGTPDIIN-KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE--- 246 + V DE + + + I + + W T + F +++ L Sbjct: 2 YFDGVVIDEVAQIKPTLWGEVIRPALAD---RKGWAAFIGTPKGINLFSQLYDQALNLMS 58 Query: 247 ----DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302 DW ID + + R E L F + N IP + I Sbjct: 59 KGDPDWIAMLYSVEQTHVIDEKELAALKVEMSE--NEFRQEFLCDFSAAQDNGLIPIDDI 116 Query: 303 EEAMSREAIDDLY--APLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354 A ++ + Y APLI G D+A G D +V+ RRG + Sbjct: 117 RAAANKFYRESEYMGAPLIYGIDVARFGSDASVIFKRRGLVAFEPIVIRKFDNM 170 >gi|224583103|ref|YP_002636901.1| terminase large subunit [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224467630|gb|ACN45460.1| terminase large subunit [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 492 Score = 97.3 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 44/334 (13%), Positives = 90/334 (26%), Gaps = 53/334 (15%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q EA + + P FK A GRG KT +L G +IC Sbjct: 4 QCSIPEAFEEYLQ-------PARFKVAY-GGRGSAKTRTF-ITILLNNVIYHGWKLICFR 54 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 +K + +AE+ + ++ + + + Sbjct: 55 EYMKSIKESCYAEIVEEINRRNLHSLVTINKTEIF----------------ANSGGRISF 98 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF-----TELNPNR----FWI 225 + + G + A +EA ++++ + W+ Sbjct: 99 DFLRLNVENIKGY--ANFDAALVEEAENVSKDSWETLIPTVRKEFYSAEYGRVVESEIWV 156 Query: 226 MTSNTRRL---------NGWFYDIFNIPLEDWKRYQ-IDTRTVEGIDSGFHEGIISRYGL 275 N + Y ++ + + I+ + Sbjct: 157 A-YNPKNRLSDTHQRFVTNRIYPDYDENGNRYCIVKQINYTANPWFPETLRRDMEIMKKA 215 Query: 276 DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTV 333 + ++ R LG+ I ++E A +I D + G D Sbjct: 216 NHELYRHVYLGEPVGASEMAIIKFAWLEAATDAHIKLGWKAKGAVIAAHDPSDTGPDAKG 275 Query: 334 VVFRRGNIIEHIFDWSAKLIQETNQEGCPVGSSI 367 R G++++ + + I EG SS+ Sbjct: 276 YAVRHGSVVKRVCEGLLMDI----NEGADWASSL 305 >gi|327191373|gb|EGE58399.1| prophage MuMc02, terminase, ATPase subunit, putative [Rhizobium etli CNPAF512] Length = 248 Score = 97.3 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 43/263 (16%), Positives = 85/263 (32%), Gaps = 40/263 (15%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +P WQ + A + + R GK+T+ A++++ P Sbjct: 22 EPDPWQANLLRA--------------NPRRSMLLCSRQSGKSTVAAFLVIQTALFVPAAQ 67 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I+ ++ ++ Q L+ + +LS LP +S +Q + + Sbjct: 68 IVVVSPTQRQSNE-LFRTIVGFLSRLPGAPRPTAES-------------KQGTELSNGAR 113 Query: 170 TITCRTYSEERPDTFVGPHN-THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 ++ P T V DEA+ D + ++ P+ + + Sbjct: 114 VLS-------LPGTEKTIRGIAGVDLVVMDEAARVEDALLTAVRPMMATK-PDARLVALT 165 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 GWFY+ + W+R ++ I F + + G + E +F Sbjct: 166 TPAGKRGWFYEAWVSDDPSWERVRVPASACPRITQQFLDEELKALG--AIKFSEEYGLEF 223 Query: 289 PQQEVNNFIPHNYIEEAMSREAI 311 P IE A ++E Sbjct: 224 HD-PEEAVFPLAIIEAAFTQEVR 245 >gi|319407675|emb|CBI81323.1| phage-related protein [Bartonella sp. 1-1C] Length = 442 Score = 97.3 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 41/292 (14%), Positives = 78/292 (26%), Gaps = 36/292 (12%) Query: 84 AGRGIGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAEVSKWLSMLP-HR 138 GRG GKT A M + I+C + L + E+ + + Sbjct: 27 GGRGSGKTRSFALMTAVIGYRYGKAGERGIILCARQFQNSLAESSLEEIKRAIESYSFLS 86 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 ++E+ + Y + + R + + D Sbjct: 87 DYYEIGDKYIRSKDGYIVYAFAGLDRNIASVKSMGR-----------------ILLCWVD 129 Query: 199 EASGTPDIINKSILGFFTELNPN---RFWIMTSNTRRLNGWFYDIFNIPLE-DWKRYQID 254 EA D + ++ E W+ N R N F + + K +I+ Sbjct: 130 EAEPVTDAAWQILIPTLREEGKEWHSELWVTW-NPCRENAAVEKRFRFTEDPNIKGVEIN 188 Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314 R + + + + + G++ Q + +E Sbjct: 189 WRDNPKFPAKLNRDRKADLEQRPEQYQHIWEGEYLQAMQGAYYQKLLLEAEQEGRITIVP 248 Query: 315 YAPLI---MGCDIAGEG--GDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC 361 PLI + DI G G D T + + + E + Sbjct: 249 RDPLIQVKIFWDIGGTGAKADATALWVAQ----FVGREIRVLDYYEAQGQPL 296 >gi|330004400|ref|ZP_08304921.1| phage terminase, large subunit, PBSX family [Klebsiella sp. MS 92-3] gi|328536646|gb|EGF62969.1| phage terminase, large subunit, PBSX family [Klebsiella sp. MS 92-3] Length = 418 Score = 96.9 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 44/273 (16%), Positives = 80/273 (29%), Gaps = 37/273 (13%) Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 + V +H +P FK + AGR GK+ L+ ++ + + +A + Sbjct: 7 LSLVQLHSGQMKVFKSPHRFKV-VCAGRRWGKSRLSISKIIKAAAADRKQRVWYVAPTYQ 65 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 + LW ++ + L P W A+ + +M I + Sbjct: 66 MARQILWDDLQEVL-----------------PRKWIAKKNDTTMTI----VLKNGSEIAL 104 Query: 179 ERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 + D V DE PD K + + ++ + F Sbjct: 105 KGADKPDTLRGVALNFVVLDEFQDMKPDTWYKVLRPTLSS--TRGGALIIGTP-KGFSEF 161 Query: 238 YDIFNIPLE-------DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290 + +F I WK +Q T + E + D E L F Sbjct: 162 HKLFMIGQNPEMQAKGLWKSWQFVTADSPFVPDSEIEAAKNDM--DPKSFAQEYLASFEN 219 Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323 + P + R + P+ +G D Sbjct: 220 MSGRVYYPFD--RNVHVRPLQFNPRLPIWVGQD 250 >gi|82776052|ref|YP_402399.1| putative bacteriophage protein [Shigella dysenteriae Sd197] gi|81240200|gb|ABB60910.1| putative bacteriophage protein [Shigella dysenteriae Sd197] Length = 272 Score = 96.9 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 32/253 (12%), Positives = 78/253 (30%), Gaps = 23/253 (9%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GR K+ A + + +S + + C + +++ +++ + + RH F + Sbjct: 39 GGRSSSKSWDAAGIAI-FLSNKYTLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRI 97 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + + + + + ++ +EA Sbjct: 98 LNNKIINRV-------------TGSEFVFYGLWR----NIEEIKSLEGIDVLWLEEAHAL 140 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGID 262 + K + + ++I N + + + F P E +I+ + Sbjct: 141 TEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEGTLIRKINYDENPFLS 198 Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIM 320 + I + D D + G + I ++IE A+ + + Sbjct: 199 DTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAAVDAHKTLNFEPSGRKRI 258 Query: 321 GCDIAGEGGDKTV 333 G D+A G DK Sbjct: 259 GFDVADSGTDKCA 271 >gi|319786769|ref|YP_004146244.1| phage terminase, large subunit, PBSX family [Pseudoxanthomonas suwonensis 11-1] gi|317465281|gb|ADV27013.1| phage terminase, large subunit, PBSX family [Pseudoxanthomonas suwonensis 11-1] Length = 439 Score = 96.6 bits (238), Expect = 5e-18, Method: Composition-based stats. Identities = 38/301 (12%), Positives = 70/301 (23%), Gaps = 28/301 (9%) Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 P +K A GRG GK+ A + + PG ++ L+ EV K L Sbjct: 18 PARYKGA-HGGRGSGKSHFFAGLAVEDAIAFPG-------DAGEGLRMVCIREVQKSLKH 69 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 + E + + + I + + D+ H Sbjct: 70 S-AKSLIEAKLAEFGMREADGFKVFNEVIKTPGDGVIIFQGMQDHTADSIKSLEGFHR-- 126 Query: 195 VFNDEASGTPDIINKSILGFFTELNP-----NRFWIMTSNTRRLNGWFYDIFNIPLE--D 247 + +EA + + + W N RR + P Sbjct: 127 AWVEEAQSLSSTSLGLLRPTIRWEDAGRGLTSEMWFGW-NPRRKTDPVDVLLRGPEPPTG 185 Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307 + + S + + D G + + + Sbjct: 186 AAVVRANWSDNPWFPSVLEQERLDCLRSMPDQYEHIWEGGYATAATGAYFAQALVTAKSE 245 Query: 308 REAIDDLYAPLI---MGCDIAGEG--GDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGCP 362 PL+ DI G G D + + + E + Sbjct: 246 GRIGRVAADPLMTTRAYWDIGGTGAKADACAIWIVQ----FVGREVRVLDYYEAQGQPLA 301 Query: 363 V 363 Sbjct: 302 T 302 >gi|299534276|ref|ZP_07047625.1| phage terminase, large subunit, PBSX family [Comamonas testosteroni S44] gi|298717734|gb|EFI58742.1| phage terminase, large subunit, PBSX family [Comamonas testosteroni S44] Length = 436 Score = 96.6 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 40/299 (13%), Positives = 73/299 (24%), Gaps = 27/299 (9%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 P +K A GRG GK+ M++ PG A+ L++ EV K LS Sbjct: 17 EPARYKGA-HGGRGSGKSHFFGEMLIEDCLYEPG------ASGGEGLRSVCIREVQKDLS 69 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + E + +L+ + + + I + ++ D+ Sbjct: 70 QS-SKALLEGKLSALNLGSADGFRVYKDVITTPGDGLIIFKGMNDYTADSVKSLEGFKR- 127 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL--EDWKRY 251 + +EA + W N R + Sbjct: 128 -AWWEEAQTATQRSLDLLRPTMRAPGSQ-LWFGW-NPRFAMDPVDRMLRAAELPTGALVV 184 Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311 Q + R + + + D G + + Sbjct: 185 QANWRDNPWFPAELEQERLDCLRQQPDKYDHIWEGGYETVNEGAYFAKQLTAAKAEGRLG 244 Query: 312 D---DLYAPLIMGCDIAGEGG--DKTVVVFRR--GNIIEHIFDWSAKLIQETNQEGCPV 363 D L DI G G D + + G + + E + Sbjct: 245 VVAADPSMRLRAYVDIGGTGRNADSFAMWIVQFVGLQVRVL------DYYEAQGQPMAT 297 >gi|9631142|ref|NP_047924.1| gp33 [Streptomyces phage phiC31] gi|3947452|emb|CAA07103.1| gp33 [Streptomyces phage phiC31] Length = 519 Score = 96.6 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 44/314 (14%), Positives = 85/314 (27%), Gaps = 29/314 (9%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG---MS 109 WQ E + V + R GK+T+ A +ML+ + G Sbjct: 51 PWQRELLIDAYVLTQDTFGRWRRKHRTVVVCVARKNGKSTIAAAIMLYHLIADRGDAQRQ 110 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWF-EMQSLSLHPSGWYAELLEQSMGIDSK- 167 II AN Q + ++ + ++ P ++Q + ++ G Sbjct: 111 IIAAANDRNQAR-MVFDSAKQMVNASPKLAAVCDVQRDVIRYKDNTYRVVSADAGRQQGL 169 Query: 168 -------HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220 + T M + A PD E Sbjct: 170 NPAAVSLDEYAFSKHSDLFDALTLGSAARNQPMFLIISTAGPDPDGPF----AALCEQGE 225 Query: 221 NRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT---VEGIDSGFHEGIISRYGLDS 277 + FY + L + + D + + + Sbjct: 226 RVNSGEADDPT----LFYRSWGPKLGETVDHLDPDVWRACNPSYDILNPDDFKAAAQRST 281 Query: 278 DV-ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVV-- 334 + RI L QF + PH + + + + +++G D + +G D T + Sbjct: 282 EASFRIYRLSQFVRGASTWL-PHGLWDSLAADDDPLEPGDEVVLGFDGSWKG-DSTALVA 339 Query: 335 VFRRGNIIEHIFDW 348 R + + W Sbjct: 340 CRIRDLKVFVLGHW 353 >gi|163851850|ref|YP_001639893.1| terminase large subunit [Methylobacterium extorquens PA1] gi|163663455|gb|ABY30822.1| terminase large subunit [Methylobacterium extorquens PA1] Length = 342 Score = 96.6 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 75/302 (24%), Gaps = 32/302 (10%) Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 P +K A GRG K+ +L ++ + + ++C + + + Sbjct: 4 EFPERLDFLFEPARYKIAY-GGRGGAKSWGFGRALL-IMGAQKKIRVLCAREFQNSIAES 61 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 A +S+ + +L ++E+Q + + I R + Sbjct: 62 AHALLSQQIDLLGLSGFYEIQEKRV--------------LGSNGTEFIFK----GLRHNV 103 Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-N 242 + +EA ++ + WI N Y F Sbjct: 104 ASVKSTEGIDVCWVEEARTVSKSSWDVLIPTIRKEGSE-IWISF-NPELEEDETYKRFVK 161 Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302 P K +I + + + D G + + Sbjct: 162 NPPTGAKVVKIGWQDNPWFPDVLKQEALDLKARDPAAYLTVWDGHCKVVLDGAIYANEIM 221 Query: 303 ---EEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359 E D P+ D+ D T + F + ++ + Sbjct: 222 AATEANRFIRVPYDGTKPVHTFWDLGR--ADMTAIWFAQVVGF----EFRIIDYYQNRGH 275 Query: 360 GC 361 Sbjct: 276 AL 277 >gi|83943173|ref|ZP_00955633.1| terminase, large subunit, putative [Sulfitobacter sp. EE-36] gi|83846181|gb|EAP84058.1| terminase, large subunit, putative [Sulfitobacter sp. EE-36] Length = 408 Score = 96.2 bits (237), Expect = 7e-18, Method: Composition-based stats. Identities = 44/296 (14%), Positives = 80/296 (27%), Gaps = 36/296 (12%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134 I GRG GKT A + + + + + Q++ + S L+ Sbjct: 15 VIMGGRGAGKTRAGAEWVRAQVEGSRPLDAGRCRRVALVGETIEQVREVMIFGDSGILAC 74 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 P + ++ + G A Sbjct: 75 SPADRRPDWEATRKRL------------------VWPNGAVATVHTAHDPEGLRGPQFDA 116 Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252 + DE + + + R + T R G ++ P + Sbjct: 117 AWVDELAKWKKAEETWDQLQFALRLGEDPRVCVT--TTPRNVGVLKNLLASPST-VTTHA 173 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + F E + +RY + R E+ G IE R+ Sbjct: 174 PTEANAANLAGSFLEEVRARYRGT-RLGRQELDGVLLADAEGALWTSERIEAGRVRDVPL 232 Query: 313 DLYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG-CPVG 364 +++G D AG G D+ +V DW A ++ + +G P G Sbjct: 233 --LDRIVVGLDPATTAGAGSDECGIVVVGAQTQGPPQDWRAVVMADCTVQGATPSG 286 >gi|293604595|ref|ZP_06686998.1| phage terminase large subunit [Achromobacter piechaudii ATCC 43553] gi|292817011|gb|EFF76089.1| phage terminase large subunit [Achromobacter piechaudii ATCC 43553] Length = 463 Score = 96.2 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 40/278 (14%), Positives = 86/278 (30%), Gaps = 24/278 (8%) Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 P +K + GR KT M ++ + +C+ + ++ ++++ V + + Sbjct: 33 PKPYKL-LKGGRFSSKTQDAGGMAA-FLARNYSVRFLCLRQLQNRIADSVYTVVKEKIEA 90 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 R F++ ++ +E + + Sbjct: 91 AGWRDEFDIGVSTIRHKLTGSE-----------------FLFYGLARNIEEIKGTEGVDV 133 Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-DWKRYQI 253 + +E G + I + W++ N + + L D I Sbjct: 134 CWIEEGEGLTEEQWSIIDPTIRKEGAEV-WVLW-NPHLITDFVQAKLPALLGADCIIRHI 191 Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI-- 311 + + + D D R LGQ + + I ++IE A+ Sbjct: 192 NYPDNPFLSATAKRKAERLKEADPDAYRHIYLGQPLSSDDASVIKFHWIEAAVDAHLKLG 251 Query: 312 DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS 349 +L +G D+A G DK G I + + +W+ Sbjct: 252 IELGGARTVGYDVADSGADKNACSVFDGAICDELDEWA 289 >gi|284008456|emb|CBA74928.1| phage terminase large subunit [Arsenophonus nasoniae] Length = 477 Score = 96.2 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 34/288 (11%), Positives = 77/288 (26%), Gaps = 35/288 (12%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GRG KT A + L S +C+ +++++ A + + L ++ F + Sbjct: 21 GGRGGMKTVSFAKIALITASINK-RRFLCLREFMNSIEDSVHAVLQAEIETLRLQNRFRI 79 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + + + H + +EA Sbjct: 80 LDNCI--------------KGINDSIFKYGQLAR--NIASIKSKH--DFDVAWVEEAETV 121 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW------------KRY 251 + ++ + W N +G Y F P +D Sbjct: 122 SEKSLDILIPTIRKPGSE-LWFSF-NPAEEDGAVYKRFVKPYKDIIDDKGYYEDDDLYVG 179 Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311 ++ + + G+ + I +++ A+ Sbjct: 180 KVSYLDNPWLPEELKNDAEKMKRDNYKKWLHVYGGECDANYDDAIIQPEWVDAAIDAHIK 239 Query: 312 D--DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETN 357 ++ D A G D+ + R G ++E WS + + Sbjct: 240 LGFKPKGIRVITFDPADSGQDEKALSKRYGVLVEDCVSWSEGDVADAT 287 >gi|82702592|ref|YP_412158.1| Phage terminase, large subunit, PBSX [Nitrosospira multiformis ATCC 25196] gi|82410657|gb|ABB74766.1| Phage terminase, large subunit, PBSX [Nitrosospira multiformis ATCC 25196] Length = 417 Score = 95.8 bits (236), Expect = 9e-18, Method: Composition-based stats. Identities = 37/293 (12%), Positives = 76/293 (25%), Gaps = 30/293 (10%) Query: 63 DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN 122 P +K GRG K+ A +L + P + I+C+ + + Sbjct: 6 AEFPIKLRFLFEPARYKILY-GGRGGAKSWGVARALLIQAAATP-LRILCVREFQNSIVE 63 Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182 ++ + + + ++E+ + + + I + Sbjct: 64 SVHHLLKAQIEAIGLNSFYEVHNNVI--------------RGINGSEFIFA----GLHSN 105 Query: 183 TFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242 V+ +EA +++ + + +T N + F Sbjct: 106 VTRIKSFEGVDRVWVEEAQTVSKTSWDTLIPTIRKEGSEIW--VTYNPELNTDETHQRFV 163 Query: 243 -IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301 P +I+ D D + G Sbjct: 164 VNPPAGAVVVKINWNDNPWFPEILRREKDGLKARDPDAYQNVWEGNCRVTLEGAVYAKEL 223 Query: 302 I---EEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR--GNIIEHIFDWS 349 EE R D P+ D+ D T + F + GN + I +S Sbjct: 224 RLAQEEGRIRSVPYDEAKPVHTFFDLGW--ADNTSIWFAQTVGNELRLIDYYS 274 >gi|126011061|ref|YP_001039811.1| TerL-like protein [Burkholderia ambifaria phage BcepF1] gi|119712637|gb|ABL96858.1| TerL-like protein [Burkholderia ambifaria phage BcepF1] Length = 459 Score = 95.8 bits (236), Expect = 9e-18, Method: Composition-based stats. Identities = 44/296 (14%), Positives = 85/296 (28%), Gaps = 29/296 (9%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 A+ GR K+ A + ++ + +C + ++ +++ + + Sbjct: 20 ALYGGRASSKSHDAAGFAV-YLARNYTVKFLCARQFQNKISESVYTLIKGKIDAAGWTKE 78 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 F++ S+ AE + + ++ +EA Sbjct: 79 FDVTISSIRHKKTGAE-----------------FLFYGIARNLNEIKSTEGVDILWLEEA 121 Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVE 259 + I W++ N + + Y F P D QI+ Sbjct: 122 QYLTEEQWNVINPTIRREGSQ-IWLIW-NPDQYTDFIYQNFVVNPPADCLSKQINWTENP 179 Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DDLYAP 317 + + I Y D +A G I Y+ A+ + Sbjct: 180 FLSDTMLKVIYDEYQRDPKLAEHVYGGAPKMGGDKAIIQLQYVLAAIDAHKKLGWKIEGS 239 Query: 318 LIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA------KLIQETNQEGCPVGSSI 367 G DIA +G D +V GN++ +W K + GSSI Sbjct: 240 KRTGFDIADDGDDANAIVDAIGNVVVWAEEWDGLEDELLKSSTKVFNHALEKGSSI 295 >gi|257455568|ref|ZP_05620798.1| phage terminase, large subunit, pbsx family [Enhydrobacter aerosaccus SK60] gi|257447034|gb|EEV22047.1| phage terminase, large subunit, pbsx family [Enhydrobacter aerosaccus SK60] Length = 428 Score = 95.8 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 43/284 (15%), Positives = 78/284 (27%), Gaps = 33/284 (11%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GRG GK+ A +L +I T I+C + +K ++ +S ++ + Sbjct: 28 GGRGGGKSWEIADFLL-IIGTTAKHRILCCREVQKSIKQSVHKLLSDRIAAMGL------ 80 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 G + E+LE + + + +EA Sbjct: 81 --------GGFYEILETEIRGRNGTEFSFAGLL---GHTVDSIKSFEGATITWIEEAQTV 129 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRYQIDTRTVEGID 262 ++ PN IM+ N R Y + + +D Q++ Sbjct: 130 SAFSLGILIPTVI-RTPNPMVIMSLNPRLPQDAVYAQYIAVERDDTAVVQVNYTDNPHCP 188 Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI---EEAMSREAIDDLYAPLI 319 D D LG+ + + + D P+ Sbjct: 189 PELIRLAEQMRDEDFDNYEHIYLGRPKEIADGAIYKAEFEAIRKSNRICNVPHDPNLPVY 248 Query: 320 MGCDIAGEGGDKTVVVFRR--GNIIEHIFDWSAKLIQETNQEGC 361 D+ D T + F + G + I E N E Sbjct: 249 TSWDLGIL--DPTAIWFFQIYGKEVRVI------DYYEANNEPL 284 >gi|18466735|ref|NP_569542.1| hypothetical protein HCM2.0070c [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16506051|emb|CAD09937.1| hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] Length = 418 Score = 95.8 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 39/273 (14%), Positives = 76/273 (27%), Gaps = 37/273 (13%) Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 + V +H +P FK + AGR GK+ L+ ++ + + +A + Sbjct: 7 LSLVQLHSGQMQVFQSPHRFKV-VCAGRRWGKSRLSISTIIRAAAKEKKQRVWYVAPTYQ 65 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 + LW ++ + L R + + + Sbjct: 66 MARQILWDDLQEVLPRKWVRKKNDTTMTIV---------------------LKNGSEIAL 104 Query: 179 ERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 + D V DE PD K + + ++ + F Sbjct: 105 KGADKPDTLRGVALHFVVLDEFQDMKPDTWYKVLRPTLSS--TRGGALIIGTP-KGFSEF 161 Query: 238 YDIFNIPLE-------DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290 + ++ I WK +Q T + S E + D E L F Sbjct: 162 HKLWTIGQNKDLQRKGQWKSWQFVTADSPFVPSAEIEAAKNDM--DPKSFAQEYLASFEN 219 Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323 + P + + + P+ +G D Sbjct: 220 MSGRVYYPFD--RNVHVKPLQFNPKLPIWVGQD 250 >gi|16082806|ref|NP_395360.1| hypothetical protein YPMT1.24c [Yersinia pestis CO92] gi|31795361|ref|NP_857813.1| hypothetical protein Y1030 [Yersinia pestis KIM] gi|40787951|ref|NP_857660.2| hypothetical protein YPKMT021 [Yersinia pestis KIM] gi|45478613|ref|NP_995469.1| hypothetical protein YP_pMT025 [Yersinia pestis biovar Microtus str. 91001] gi|52788073|ref|YP_093901.1| hypothetical protein pG8786_021 [Yersinia pestis] gi|108793557|ref|YP_636707.1| hypothetical protein YPA_MT0025 [Yersinia pestis Antiqua] gi|108793757|ref|YP_636595.1| hypothetical protein YPN_MT0025 [Yersinia pestis Nepal516] gi|145597216|ref|YP_001154679.1| hypothetical protein YPDSF_4052 [Yersinia pestis Pestoides F] gi|149192775|ref|YP_001294006.1| hypothetical protein YPE_4292 [Yersinia pestis CA88-4125] gi|162417876|ref|YP_001604588.1| hypothetical protein YpAngola_0076 [Yersinia pestis Angola] gi|165939469|ref|ZP_02228016.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. IP275] gi|166214433|ref|ZP_02240468.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167402343|ref|ZP_02307808.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422791|ref|ZP_02314544.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167466683|ref|ZP_02331387.1| hypothetical protein YpesF_02065 [Yersinia pestis FV-1] gi|229896952|ref|ZP_04512111.1| hypothetical protein YPS_4795 [Yersinia pestis Pestoides A] gi|229897756|ref|ZP_04512911.1| hypothetical protein YPH_4790 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229900293|ref|ZP_04515428.1| hypothetical protein YPF_4819 [Yersinia pestis biovar Orientalis str. India 195] gi|229904817|ref|ZP_04519927.1| hypothetical protein YP516_4657 [Yersinia pestis Nepal516] gi|270491004|ref|ZP_06208077.1| phage terminase, large subunit, PBSX family [Yersinia pestis KIM D27] gi|294502015|ref|YP_003565752.1| hypothetical protein YPZ3_pMT0023 [Yersinia pestis Z176003] gi|3883031|gb|AAC82691.1| unknown [Yersinia pestis KIM 10] gi|5834709|emb|CAB55206.1| hypothetical protein YPMT1.24c [Yersinia pestis CO92] gi|45357266|gb|AAS58660.1| hypothetical protein YP_pMT025 [Yersinia pestis biovar Microtus str. 91001] gi|52538002|emb|CAG27427.1| hypothetical protein [Yersinia pestis] gi|108777821|gb|ABG20339.1| hypothetical protein YPN_MT0025 [Yersinia pestis Nepal516] gi|108782104|gb|ABG16161.1| hypothetical protein YPA_MT0025 [Yersinia pestis Antiqua] gi|145212984|gb|ABP42389.1| hypothetical protein YPDSF_4052 [Yersinia pestis Pestoides F] gi|148872433|gb|ABR14922.1| hypothetical protein YPMT1.24c [Yersinia pestis CA88-4125] gi|162350848|gb|ABX84797.1| conserved hypothetical protein [Yersinia pestis Angola] gi|165912657|gb|EDR31287.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. IP275] gi|166204381|gb|EDR48861.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166958284|gb|EDR55305.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048235|gb|EDR59643.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|229678132|gb|EEO74238.1| hypothetical protein YP516_4657 [Yersinia pestis Nepal516] gi|229686652|gb|EEO78733.1| hypothetical protein YPF_4819 [Yersinia pestis biovar Orientalis str. India 195] gi|229693337|gb|EEO83387.1| hypothetical protein YPH_4790 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229699988|gb|EEO88028.1| hypothetical protein YPS_4795 [Yersinia pestis Pestoides A] gi|262363909|gb|ACY60628.1| hypothetical protein YPD4_pMT0023 [Yersinia pestis D106004] gi|262364065|gb|ACY64401.1| hypothetical protein YPD8_pMT0023 [Yersinia pestis D182038] gi|270334985|gb|EFA45763.1| phage terminase, large subunit, PBSX family [Yersinia pestis KIM D27] gi|294352486|gb|ADE66542.1| hypothetical protein YPZ3_pMT0023 [Yersinia pestis Z176003] gi|320017547|gb|ADW01117.1| hypothetical protein YPC_4788 [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 418 Score = 95.8 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 39/273 (14%), Positives = 76/273 (27%), Gaps = 37/273 (13%) Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 + V +H +P FK + AGR GK+ L+ ++ + + +A + Sbjct: 7 LSLVQLHSGQMQVFQSPHRFKV-VCAGRRWGKSRLSISTIIRAAAKEKKQRVWYVAPTYQ 65 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 + LW ++ + L R + + + Sbjct: 66 MARQILWDDLQEVLPRKWVRKKNDTTMTIV---------------------LKNGSEIAL 104 Query: 179 ERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 + D V DE PD K + + ++ + F Sbjct: 105 KGADKPDTLRGVALHFVVLDEFQDMKPDTWYKVLRPTLSS--TRGGALIIGTP-KGFSEF 161 Query: 238 YDIFNIPLE-------DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290 + ++ I WK +Q T + S E + D E L F Sbjct: 162 HKLWTIGQNKDLQRKGQWKSWQFVTADSPFVPSAEIEAAKNDM--DPKSFAQEYLASFEN 219 Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323 + P + + + P+ +G D Sbjct: 220 MSGRVYYPFD--RNVHVKPLQFNPKLPIWVGQD 250 >gi|293396491|ref|ZP_06640767.1| phage terminase large subunit [Serratia odorifera DSM 4582] gi|291420755|gb|EFE94008.1| phage terminase large subunit [Serratia odorifera DSM 4582] Length = 430 Score = 95.8 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 34/265 (12%), Positives = 85/265 (32%), Gaps = 24/265 (9%) Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 +S + + +C + +++ +++A + + RH F + + Sbjct: 4 FLSDKYRLRFLCTRQIQNKIEESVYALLKIQIERFGLRHRFRILDNKIINRF-------- 55 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220 + + + ++N+EA + + + + Sbjct: 56 -----TGSEFMFYGLWR----HVDEIKSLESIDVLWNEEAHAMTEAQWEVLEPTIRKEGS 106 Query: 221 NRFWIMTSNTRRLNGWFYDIFNI-PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279 W + N R + + F + P D +I+ + I + D+++ Sbjct: 107 E-CWFLF-NPRLTTDFVWRNFVVAPPPDTLVRKINYDENPFLSRTIMNVIEAAKARDAEM 164 Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSRE--AIDDLYAPLIMGCDIAGEGGDKTVVVFR 337 LG + I ++IE A+ + +G D+A G DK V+ Sbjct: 165 FEHVYLGMPRTDDDEAIIKLSWIEAAVDAHKALNIEPAGHRRVGFDVADSGADKCANVYA 224 Query: 338 RGNIIEHIFDWSA--KLIQETNQEG 360 G++ +W A + ++ + Sbjct: 225 HGSVALWADEWKAREDELMKSCKRT 249 >gi|239590013|ref|YP_002941860.1| gp2 [Mycobacterium phage Angel] gi|238890545|gb|ACR77534.1| gp2 [Mycobacterium phage Angel] Length = 478 Score = 95.8 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 43/334 (12%), Positives = 82/334 (24%), Gaps = 64/334 (19%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 RWQ + + + ++ ++ IS R +GKT L ++ L PG+++I Sbjct: 39 DRWQDGLGRLILALDGTGLYAADTSV----ISIPRQVGKTYLIGCIVFALALLTPGLTVI 94 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A+ K T + + + L + H D Y Sbjct: 95 WTAHRTKTAKETFGSMKAMCATPLVNAH----------------VRNVSDARGDEGIYLH 138 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 + G + DEA D ++ + ++T Sbjct: 139 NGSRILFGARENGFGLGFAGVGILVLDEAQRLTDKAMDDLIPTMNTVENPLI-LLTGTPP 197 Query: 232 RLNG------------------------WFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267 R + D P + + + + Sbjct: 198 RPTDSGEVFTMLRQDALDGESEGTLYVEFSADEGAHPDDRAQLRKANPSYPHRTSERAIR 257 Query: 268 GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE 327 + +S E G + + + + A R A G G Sbjct: 258 RMRKNLTEES--FLREAFGIW-----DKVVHRPVVTAARWRRLESTGPA---AGVKPNGF 307 Query: 328 GGDKT--------VVVFRRGNIIEHIFDWSAKLI 353 G D + V G+ W+ Sbjct: 308 GVDMSHSRMVSVNAVWL-DGDQAHTEEVWAGDDT 340 >gi|109392289|ref|YP_655519.1| gp2 [Mycobacterium phage Halo] gi|189043089|ref|YP_001936030.1| hypothetical protein BPs1_2 [Mycobacterium phage BPs] gi|91980539|gb|ABE67259.1| terminase [Mycobacterium phage Halo] gi|171909204|gb|ACB58161.1| hypothetical protein BPs1_2 [Mycobacterium phage BPs] gi|255927846|gb|ACU41466.1| gp2 [Mycobacterium phage Hope] Length = 478 Score = 95.8 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 43/334 (12%), Positives = 82/334 (24%), Gaps = 64/334 (19%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 RWQ + + + ++ ++ IS R +GKT L ++ L PG+++I Sbjct: 39 DRWQDGLGRLILALDGTGLYAADTSV----ISIPRQVGKTYLIGCIVFALALLTPGLTVI 94 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A+ K T + + + L + H D Y Sbjct: 95 WTAHRTKTAKETFGSMKAMCATPLVNAH----------------VRNVSDARGDEGIYLH 138 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 + G + DEA D ++ + ++T Sbjct: 139 NGSRILFGARENGFGLGFAGVGILVLDEAQRLTDKAMDDLIPTMNTVENPLI-LLTGTPP 197 Query: 232 RLNG------------------------WFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267 R + D P + + + + Sbjct: 198 RPTDSGEVFTMLRQDALDGESEGTLYVEFSADEGAHPDDRAQLRKANPSYPHRTSERAIR 257 Query: 268 GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE 327 + +S E G + + + + A R A G G Sbjct: 258 RMRKNLTEES--FLREAFGIW-----DKVVHRPVVTAARWRRLESTGPA---AGVKPNGF 307 Query: 328 GGDKT--------VVVFRRGNIIEHIFDWSAKLI 353 G D + V G+ W+ Sbjct: 308 GVDMSHSRMVSVNAVWL-DGDQAHTEEVWAGDDT 340 >gi|99080898|ref|YP_613052.1| hypothetical protein TM1040_1057 [Ruegeria sp. TM1040] gi|99037178|gb|ABF63790.1| DNA packaging protein Gp17 (Terminase) [Ruegeria sp. TM1040] Length = 425 Score = 95.4 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 40/296 (13%), Positives = 77/296 (26%), Gaps = 36/296 (12%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134 I GRG GKT A + + + + + Q+++ + S L+ Sbjct: 32 VILGGRGAGKTRAGAEWVRSQVEGAGPFGVGSARRVALVGETYDQVRDVMIHGDSGILAC 91 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 P E ++ + A Sbjct: 92 SPPDRRPEWRAGERRL------------------LWPNGASAQAFSASDPEVLRGPQFDA 133 Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252 + DE + + R + T R + P + Sbjct: 134 AWVDELAKWRRAQEAWDMLQFALRLGTAPRVCVT--TTPRNVPLLKGLLQSPST-VTTHA 190 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + F + +RY S +AR E+ G + + E R+ Sbjct: 191 PTEANSANLAPSFLSEVRARYAG-SRLARQELDGVLLADVDGALWSSDMLAEIQRRDTP- 248 Query: 313 DLYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC-PVG 364 +++ D A +G D ++ I W A ++ + +G P G Sbjct: 249 -RLDRIVVAVDPSVSAHKGSDACGIIVAGAQTQGPISSWRAYVLADHTVQGLGPTG 303 >gi|213161040|ref|ZP_03346750.1| putative prophage terminase large subunit [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 421 Score = 95.4 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 35/253 (13%), Positives = 83/253 (32%), Gaps = 22/253 (8%) Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161 ++ + + C + +++ +++ + + RH F + + + Sbjct: 1 MANKYSLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRILNNKIINRV--------- 51 Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221 + + + + ++ +EA + K + + Sbjct: 52 ----TGSEFVFYGLWR----NIEEIKSLEGIDVLWLEEAHALTEYQWKILEPTIRKEGSE 103 Query: 222 RFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280 ++I N + + + F P ED +I+ + + I + D + Sbjct: 104 CWFIF--NPGLVTDFVWRNFVVDPPEDTLIRKINYDENPFLSDTMLKVIDAARRRDPEGF 161 Query: 281 RIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD--LYAPLIMGCDIAGEGGDKTVVVFRR 338 G + I ++IE A+ + D +G D+A G DK V+R Sbjct: 162 VHVYEGVPESDDDAAIIKLSWIEAAVDAHKVLDFGPEGRKRIGFDVADSGADKCANVYRY 221 Query: 339 GNIIEHIFDWSAK 351 G++I +W AK Sbjct: 222 GSVIYWADEWKAK 234 >gi|158425199|ref|YP_001526491.1| phage-related DNA maturase [Azorhizobium caulinodans ORS 571] gi|158332088|dbj|BAF89573.1| phage-related DNA maturase [Azorhizobium caulinodans ORS 571] Length = 569 Score = 95.4 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 48/377 (12%), Positives = 89/377 (23%), Gaps = 85/377 (22%) Query: 24 CVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS 83 F+NF+ W G P P Q + V+ + I Sbjct: 20 LKADFRNFLYVV--WKHLGLP-----DPTPIQ----YDIAVYLQHGPK-------RSIIE 61 Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 A RG+GK+ + + + WL+ P I+ ++ S+ + + + M +H Sbjct: 62 AFRGVGKSWVTSAFVCWLLYCNPDHKILVVSASKIRADDFTTFTLRLIKEMPVLQHLIPK 121 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY----------SEERPDTFVGPHNTHGM 193 + + S K IT + E P+ + Sbjct: 122 PDQRESKVAFDVGPAKASHSPSVKSVGITGQLAGSRADTIIADDVEIPNNSQTQAMRDKL 181 Query: 194 AVFNDEASGT------------PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241 + E P R W Y Sbjct: 182 SELVKEFDAILKPGGRIIYLGTPQTEQSLYNELPNRGYQVRIWPARI-PDEKQRAIYGER 240 Query: 242 NIP------LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG------QFP 289 P + WK + + + YG + + ++P Sbjct: 241 LAPYIDDLIAKGWKA--GASTDPKRFSEEDLWEREASYGRAGFSLQFMLDTRLSDADRYP 298 Query: 290 QQEVNNF------------------------------IPHNYIEEAMSREAIDDLYAPLI 319 + + + + M + Y + Sbjct: 299 LKLSDLIVMSLNPTLAPLKVVWASSPELAHNELPNVGFAGDRLYRPMWVDKDWTEYTGSV 358 Query: 320 MGCDIAGEGGDKTVVVF 336 M D +G GGD+T Sbjct: 359 MAIDPSGRGGDETGFAV 375 >gi|323175059|gb|EFZ60673.1| phage terminase large subunit [Escherichia coli LT-68] Length = 399 Score = 95.4 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 31/215 (14%), Positives = 69/215 (32%), Gaps = 9/215 (4%) Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 ++Q + L + + + + + + ++ +E Sbjct: 4 LLKIQIDRFGLRHRFRILNNKIINRVTGSEFVFYGLWR----NIEEIKSLEGIDVLWLEE 59 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTV 258 A + K + + ++I N + + + F P E +I+ Sbjct: 60 AHALTEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEGTLIRKINYDEN 117 Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYA 316 + + I + D D + G + I ++IE A+ + Sbjct: 118 PFLSDTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAAVDAHKTLNFEPSG 177 Query: 317 PLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 +G D+A G DK V+R G+++ +W AK Sbjct: 178 RKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAK 212 >gi|163746673|ref|ZP_02154030.1| hypothetical protein OIHEL45_14759 [Oceanibulbus indolifex HEL-45] gi|161379787|gb|EDQ04199.1| hypothetical protein OIHEL45_14759 [Oceanibulbus indolifex HEL-45] Length = 414 Score = 95.4 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 40/309 (12%), Positives = 80/309 (25%), Gaps = 32/309 (10%) Query: 62 VDVHCHSNVNNSNPTIFKCAI-SAGRGIGKTTLNAWMMLWLISTRPG------MSIICIA 114 + N ++ + GRG GKT A + + + + Sbjct: 1 MFEFWALNHQLPPEGDWRTWVIMGGRGAGKTRAGAEWVRSKVEGSRPLDPGECSRVALVG 60 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 + Q++ + S L+ P + ++ Sbjct: 61 ETIEQVREVMIFGDSGILACSPPDRRPDWEATRKRL------------------VWPNGA 102 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 + G A + DE + F R + + T R Sbjct: 103 IATVHTAHDPEGLRGPQFDAAWVDELAKWKRGQEAWDQLQFALRLGERPQVCVTTTPRNV 162 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294 + P + + F E + +RY + R E+ G Sbjct: 163 DVLKALLQSPST-VTTHAPTEANAANLAGSFLEEVRARYRGT-RLGRQELDGVLLADAEG 220 Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIA---GEGGDKTVVVFRRGNIIEHIFDWSAK 351 +E R + +++G D A G G D+ +V +W A Sbjct: 221 ALWTSALLEAG--RVQVAPELDRIVVGLDPATTSGAGSDECGIVVVGAQTQGPPQEWRAV 278 Query: 352 LIQETNQEG 360 ++ + +G Sbjct: 279 VLADCTVQG 287 >gi|269941618|emb|CBI50024.1| phage protein [Staphylococcus aureus subsp. aureus TW20] Length = 599 Score = 95.0 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 60/414 (14%), Positives = 109/414 (26%), Gaps = 106/414 (25%) Query: 4 LISTDQKLEQELHEM-LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAV 62 +T + EQ + + + + + FV+ F +Q + A+ Sbjct: 24 KRNTKSRSEQTMENIAVWISFYRENPHRFVLDFMN-----------INLRPFQCVLLWAM 72 Query: 63 DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN 122 H +F A RG+GKT L+A L PG II A +++Q N Sbjct: 73 IHH--------QYFMF----LASRGLGKTFLSAVYCLTRCILYPGTKIIITAPTKSQGIN 120 Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182 L ++ LS L HR + + + P + + + Sbjct: 121 VLEKIENELLSPLIHREIESINTGNQKPMIAFH----------NGSWIRVVA-------- 162 Query: 183 TFVGPHNTHGMAVFNDEASGTPDIINK-SILGFFTELNPNRFW--IMTSNTRRLNG---- 235 + + DE + + T F N R Sbjct: 163 SNDNARGHRANLLLVDEFVKVDEDLIDTVFKKMLTSQREPAFLHKAKYKNYPREENTQMY 222 Query: 236 ---------WFYDIFNIPLED-----------------------------WKRYQIDTRT 257 W YD + K+ + + + Sbjct: 223 LSSAWMKSHWAYDSMRSFTKQMLKKKSEDDLKSFVCHIPYYTGVMEKLYSHKQMKAEAQA 282 Query: 258 VEGIDSGFHEGIISR-YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA 316 F + + +G F ++ F P + +A I + Sbjct: 283 EGFNKMKFAMEMEAVWWGETESAFFNFNTIDFNRKLSQAFYPKEVLVQADINNPIKEPKE 342 Query: 317 PLIMGCDIAGEGG---DKTVV------------VFRRGNIIEHIFDWSAKLIQE 355 ++ D+A GG D +V R+ N +E + Q Sbjct: 343 KRLLAVDVARMGGNSNDASVFSLIRLLPKGKQQYERQLNYMEDME---GIDFQT 393 >gi|240851102|ref|YP_002972504.1| phage terminase large subunit [Bartonella grahamii as4aup] gi|240268225|gb|ACS51813.1| phage terminase large subunit [Bartonella grahamii as4aup] Length = 453 Score = 95.0 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 72/291 (24%), Gaps = 34/291 (11%) Query: 84 AGRGIGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 GRG GKT A M + I+C + L + E+ + + P Sbjct: 39 GGRGSGKTRSFALMSAVVGYRHGMAGERGIILCARQFQNSLNESSLEEIKRAIESYP--- 95 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 +Y + D + + + + DE Sbjct: 96 ---------FLQDYYDIGDKYIKSKDGRIVYVFAGLDR----NIASIKSMGRVFLCWVDE 142 Query: 200 ASGTPDIINKSILGFFTELNPN---RFWIMTSNTRRLNGWFYDIFNIPLEDW-KRYQIDT 255 A + ++++ E + W+ N N F K +I+ Sbjct: 143 AEPVTETAWQTLIPTLREEGKDWNAELWVTW-NPCYENAPVEKRFRNVDNPHIKGAEINW 201 Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE---AMSREAID 312 R + + + G++ Q + +E Sbjct: 202 RDNPQFPEKLNRDRMDDLQQRPEQYNHIWEGEYLQAVQGAYYQKCLLEAEMEGRITTVPR 261 Query: 313 DLYAPLIMGCDIAGEG--GDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC 361 D + + DI G G D T + + + E + Sbjct: 262 DPLMQVRIFWDIGGTGAKADATALWVAQ----FIGREIRVLDYYEAQGQPL 308 >gi|83954308|ref|ZP_00963028.1| terminase, large subunit, putative [Sulfitobacter sp. NAS-14.1] gi|83841345|gb|EAP80515.1| terminase, large subunit, putative [Sulfitobacter sp. NAS-14.1] Length = 408 Score = 95.0 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 44/296 (14%), Positives = 80/296 (27%), Gaps = 36/296 (12%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134 I GRG GKT A + + + + + Q++ + S L+ Sbjct: 15 VIMGGRGAGKTRAGAEWVRAQVEGSRPLDAGRCRRVALVGETIEQVREVMIFGDSGILAC 74 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 P + ++ + G A Sbjct: 75 SPADRRPDWEATRKRL------------------VWPNGAVATVHTAHDPEGLRGPQFDA 116 Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252 + DE + + + R + T R G ++ P + Sbjct: 117 AWVDELAKWKKAEETWDQLQFALRLGEDPRACVT--TTPRNVGVLKNLLASPST-VTTHA 173 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + F E + +RY + R E+ G IE R+ Sbjct: 174 PTEANAANLAGSFLEEVRARYRGT-RLGRQELDGVLLADAEGALWTSERIEAGRVRDVPL 232 Query: 313 DLYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG-CPVG 364 +++G D AG G D+ +V DW A ++ + +G P G Sbjct: 233 --LDRIVVGLDPATTAGAGADECGIVVVGAQTQGPPQDWRAVVLADCTVQGATPSG 286 >gi|160897385|ref|YP_001562967.1| PBSX family phage terminase large subunit [Delftia acidovorans SPH-1] gi|160362969|gb|ABX34582.1| phage terminase, large subunit, PBSX family [Delftia acidovorans SPH-1] Length = 433 Score = 95.0 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 35/294 (11%), Positives = 71/294 (24%), Gaps = 34/294 (11%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSI----ICIANSETQLKNTLWAEVSKWLSMLP 136 A GRG GKT A M + +C L+++ E + + P Sbjct: 24 ACDGGRGSGKTRSFAKMAAVKGYQYGKAGVTGILLCARQFMNSLEDSSLEECKRAIEDEP 83 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 + +Y + D + G + + Sbjct: 84 ------------WLAAYYDVGDKYIKSRDGRITFAFAGLDRNIASIKSKG----RLLLCW 127 Query: 197 NDEASGTPDIINKSILGFFTELN---PNRFWIMTSNTRRLNGWFYDIFNIPLE-DWKRYQ 252 DEA D +++ E W+ N +R + F + K + Sbjct: 128 VDEAEPVTDEAWTTLIPTLREEGTDWNAELWVTW-NPKRKSAPVEKRFKGSSDPRMKYVR 186 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + + + + + G + + + ++ Sbjct: 187 CNWKDNPKFPALLERVRLRDLAERPEQYAHIWEGDYATVIEGAYFASHIVKARQDNRIGR 246 Query: 313 DLYAPLI---MGCDIAGEG--GDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC 361 PL+ DI G G D + + + E + Sbjct: 247 VPADPLMTLRAFVDIGGTGARADAFAMWIAQ----FVGKEIRVLDYYEQVGQPL 296 >gi|213029404|ref|ZP_03343851.1| putative prophage terminase large subunit [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 282 Score = 95.0 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 35/246 (14%), Positives = 79/246 (32%), Gaps = 22/246 (8%) Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 C + +++ +++ + + RH F + + + + Sbjct: 7 RFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRILNNKIINRV-------------TGS 53 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 + + + ++ +EA + K + + ++I Sbjct: 54 EFVFYGLWR----NIEEIKSLEGIDVLWLEEAHALTEYQWKILEPTIRKEGSECWFIF-- 107 Query: 229 NTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287 N + + + F P ED +I+ + + I + D + G Sbjct: 108 NPGLVTDFVWRNFVVDPPEDTLIRKINYDENPFLSDTMLKVIDAARRRDPEGFVHVYEGV 167 Query: 288 FPQQEVNNFIPHNYIEEAMSREAIDD--LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHI 345 + I ++IE A+ + D +G D+A G DK V+R G++I Sbjct: 168 PESDDDAAIIKLSWIEAAVDAHKVLDFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWA 227 Query: 346 FDWSAK 351 +W AK Sbjct: 228 DEWKAK 233 >gi|57867562|ref|YP_189190.1| prophage, terminase, ATPase subunit [Staphylococcus epidermidis RP62A] gi|57638220|gb|AAW55008.1| prophage, terminase, ATPase subunit, putative [Staphylococcus epidermidis RP62A phage SP-beta] Length = 599 Score = 94.6 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 60/414 (14%), Positives = 108/414 (26%), Gaps = 106/414 (25%) Query: 4 LISTDQKLEQELHEM-LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAV 62 +T + EQ + + + + + FV+ F +Q + A+ Sbjct: 24 KRNTKSRSEQTMENIAVWISFYRENPHRFVLDFMN-----------INLRPFQCVLLWAM 72 Query: 63 DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN 122 H +F A RG+GKT L+A L PG II A +++Q N Sbjct: 73 IHH--------QYFMF----LASRGLGKTFLSAVYCLTRCILYPGTKIIITAPTKSQGIN 120 Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182 L ++ LS L HR + + + P + + + Sbjct: 121 VLEKIENELLSPLIHREIESINTGNQKPMIAFH----------NGSWIRVVA-------- 162 Query: 183 TFVGPHNTHGMAVFNDEASGTPDIINK-SILGFFTELNPNRFW--IMTSNTRRLNG---- 235 + + DE + + T F N R Sbjct: 163 SNDNARGHRANLLLVDEFVKVDEDLIDTVFKKMLTSQREPAFLHKAKYKNYPREENTQMY 222 Query: 236 ---------WFYDIFNIPLED-----------------------------WKRYQIDTRT 257 W YD K+ + + + Sbjct: 223 LSSAWMKSHWAYDSMRSFTRQMLKKKSEDDLKSFVCHIPYYTGVMEKLYSHKQMKAEAQA 282 Query: 258 VEGIDSGFHEGIISR-YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA 316 F + + +G F ++ F P + +A I + Sbjct: 283 EGFNKMKFAMEMEAVWWGETESAFFNFNTIDFNRKLSQAFYPKEVLVQADINNPIKEPKE 342 Query: 317 PLIMGCDIAGEGG---DKTVV------------VFRRGNIIEHIFDWSAKLIQE 355 ++ D+A GG D +V R+ N +E + Q Sbjct: 343 KRLLAVDVARMGGNSNDASVFSLIRLLPKGKQQYERQLNYMEDME---GIDFQT 393 >gi|211731785|gb|ACJ10115.1| terminase [Bacteriophage APSE-7] Length = 469 Score = 94.6 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 35/288 (12%), Positives = 78/288 (27%), Gaps = 35/288 (12%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GRG KT A + L + +C+ +++++ A + + L F + Sbjct: 12 GGRGGMKTVSFAKIALITAAMHK-RRFLCLREFMNSIEDSVHAVLQAEVETLGLHARFRV 70 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + + + + H + +EA Sbjct: 71 LNSCI--------------EGINASIFKYGQLAR--NIASIKSKH--DFDVAWVEEAETV 112 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL------------EDWKRY 251 + +++ + W N +G Y F P +D Sbjct: 113 SEKSLDTLISTIRKPGSE-LWFSF-NPSEEDGAVYQRFVKPYKAIIDKKGYYEDDDLYVG 170 Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311 + + + + R G+ + I +++ A+ Sbjct: 171 NVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANYDDALIQPEWVDAAIDAHIK 230 Query: 312 D--DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETN 357 ++ D A G D+ + R G +IE WS + + Sbjct: 231 LGFPPRGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWSEGDVADAT 278 >gi|319408093|emb|CBI81746.1| phage related protein [Bartonella schoenbuchensis R1] gi|319408856|emb|CBI82513.1| phage related protein [Bartonella schoenbuchensis R1] Length = 444 Score = 94.6 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 36/291 (12%), Positives = 70/291 (24%), Gaps = 34/291 (11%) Query: 84 AGRGIGKTTLNAWMML----WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 GRG GKT A M I+C + L + E+ + + Sbjct: 30 GGRGSGKTRSFALMAALKGYEYGMGGISGIILCARQFQNSLAESSLQEIKRAIE------ 83 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 +Y D + +S + + + DE Sbjct: 84 ------TYDFLKDYYCVGESSIKSKDGR----ISFQFSGLDRNIASIKSMGRILLCWVDE 133 Query: 200 ASGTPDIINKSILGFFTELN---PNRFWIMTSNTRRLNGWFYDIFNIPLED-WKRYQIDT 255 A + ++++ E W+ N R N F + K +++ Sbjct: 134 AEPVTETAWQTLIPTLREEGEGWRAELWVTW-NPLRENAPVERRFRFTKDQNIKGVEVNW 192 Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI---EEAMSREAID 312 + + G + + + + +E Sbjct: 193 SDNPLFPQKLQRVRLDDLQNRPESYNHIWEGDYLKAVQGAYFQKEMLAAEQEGRVGRVAR 252 Query: 313 DLYAPLIMGCDIAGEG--GDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC 361 D P+ DI G G D T + + + E + Sbjct: 253 DPLMPIRAFWDIGGTGAKADATAIWIAQ----FVGREIRVLDYYEAQGQPL 299 >gi|310722310|ref|YP_003969134.1| terminase subunit [Aeromonas phage phiAS4] gi|306021153|gb|ADM79688.1| terminase subunit [Aeromonas phage phiAS4] Length = 612 Score = 94.2 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 46/376 (12%), Positives = 94/376 (25%), Gaps = 76/376 (20%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + R + ++ L E C F + + +Q + + Sbjct: 83 LKRANIKIKWTKEMLAERK---RCKEDIVYFAENYCCIEHIDYGIIRVQ-LRDYQKDMLR 138 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + + N S R +GKTT+ A + + ++ +A+ + Sbjct: 139 IMAGNRLMAANLS------------RQLGKTTVVAIFLAHFVCFNSAKNVGILAHKASMS 186 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 L + L +LP E + S+ + + + Sbjct: 187 AEVLHR-TKQALELLPD-----------FLQPGIVEWNKGSITLGNGCAIGAFSS----- 229 Query: 181 PDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 + ++ DE + P + +I + I+ + T +Y Sbjct: 230 --SPDAVRGNSFALIYIDEVAFIPNFNDAWLAIQPVISSG--RHSKILMTTTPNGLNHWY 285 Query: 239 DIFNIP----------LEDWKRYQIDTRTV---------------EGIDSGFHEGIISRY 273 DI+ + Y +V D G+ + Sbjct: 286 DIWTAAITPNSDGSGSKSGFVPYTATWSSVKERMYSDGSKTDGSDSYFDDGYSWSAKTIA 345 Query: 274 GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA----------IDDLYAPLIMGCD 323 G + + E F Q I + + +E I D Sbjct: 346 GSSLEAFQQEHNTAF-QGTSGTLINGFKLSKMTWKEVPASDNFTMFKEPIEGHKYIATLD 404 Query: 324 IA-GEGGDKTVVVFRR 338 A G G D + Sbjct: 405 SAEGRGQDYHAMHIYD 420 >gi|152982949|ref|YP_001353896.1| hypothetical protein mma_2206 [Janthinobacterium sp. Marseille] gi|151283026|gb|ABR91436.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 436 Score = 94.2 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 44/278 (15%), Positives = 74/278 (26%), Gaps = 37/278 (13%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRP--GMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + A R GKT ++ T +A Q K+ W V ++ +++P Sbjct: 28 VVVAHRRAGKTVACVNELIKAALTFHGNDGRFAYVAPFYRQAKSVAWDYVKRFSAVIP-- 85 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + E + ID D V D Sbjct: 86 ---------------GISINESELRID----YPNGSRIQLFGADNADALRGLFFDGVVAD 126 Query: 199 EASGTPDIIN-KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP--LEDWKRYQIDT 255 E + I + W + T + F++I+ EDW I Sbjct: 127 EYGDWKPSVWGYVIRPALADRGG---WAVIIGTPKGRNQFWEIYQHAGVNEDWLCLTIRA 183 Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY 315 + E + D R E+ F + DDLY Sbjct: 184 SESGLLPPKEIEALQLELTED--AWRQEMECDFDAALPGAIFGKEIWQAEQDGRVKDDLY 241 Query: 316 AP---LIMGCDIAGEGGDKTVVVFRR-GNIIEHIFDWS 349 P + D+ D T + + + G + I +S Sbjct: 242 DPELKVHAVLDLGFT--DDTAIWWFQVGKELRIIDCYS 277 >gi|163868971|ref|YP_001610200.1| hypothetical protein Btr_1983 [Bartonella tribocorum CIP 105476] gi|161018647|emb|CAK02205.1| phage-related protein [Bartonella tribocorum CIP 105476] Length = 453 Score = 94.2 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 38/291 (13%), Positives = 72/291 (24%), Gaps = 34/291 (11%) Query: 84 AGRGIGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 GRG GKT A M + I+C + L + E+ + + P Sbjct: 39 GGRGSGKTRSFALMSAVVGYRHGMAGERGIILCARQFQNSLNESSLEEIKRAIEAYP--- 95 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 +Y + D + + + + DE Sbjct: 96 ---------FLQDYYEIGDKYIKSKDGRIAYVFAGLDR----NIASIKSMGRVFLCWVDE 142 Query: 200 ASGTPDIINKSILGFFTELN---PNRFWIMTSNTRRLNGWFYDIFNIPLE-DWKRYQIDT 255 A + ++++ E W+ N N F + K +I+ Sbjct: 143 AEPVTETAWQTLIPTLREEGDDWNAELWVTW-NPYHENAPVEKRFRNVDNPNIKGVEINW 201 Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE---AMSREAID 312 R + +S + G + Q + +E Sbjct: 202 RDNPKFPEKLNRDRLSDLQQRPEQYNHIWEGGYLQAVQGAYYQKCLLEAEMEGRITTVPR 261 Query: 313 DLYAPLIMGCDIAGEG--GDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC 361 D + + DI G G D T + + + E + Sbjct: 262 DPLMQVRIFWDIGGTGAKADATALWVAQ----FVGREIRVLDYYEAQGQPL 308 >gi|254485756|ref|ZP_05098961.1| phage DNA Packaging Protein [Roseobacter sp. GAI101] gi|214042625|gb|EEB83263.1| phage DNA Packaging Protein [Roseobacter sp. GAI101] Length = 452 Score = 93.9 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 42/296 (14%), Positives = 79/296 (26%), Gaps = 36/296 (12%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134 I GRG GKT A + ++ + + + Q++ + S L+ Sbjct: 59 VIMGGRGAGKTRAGAEWVRSMVEGARPLDAGRCRRVALVGETIEQVREVMIFGDSGILAC 118 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 P + ++ S G A Sbjct: 119 SPADRRPDWEATRKRL------------------VWPNGAVASVHTAHDPEGLRGPQFDA 160 Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252 + DE + + + R + T R + P + Sbjct: 161 AWVDELAKWKKAEETWDQLQFALRLGEDPRVCVT--TTPRNVDVLKKLLASPST-VTTHA 217 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + F E + +RY + R E+ G +E R Sbjct: 218 PTEANAANLAGSFLEEVRARYRGT-RLGRQELDGVLLADAEGALWTSEMLERG--RIEKL 274 Query: 313 DLYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG-CPVG 364 + +++G D AG G D+ +V +W A ++ + +G P G Sbjct: 275 PTFDRIVVGVDPATTAGAGSDECGIVVVGAQTQGAPQNWRAVVLADCTAQGATPSG 330 >gi|211731761|gb|ACJ10100.1| terminase [Bacteriophage APSE-4] Length = 469 Score = 93.9 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 34/288 (11%), Positives = 80/288 (27%), Gaps = 35/288 (12%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GRG KT A + L + +C+ +++++ A + + L + F + Sbjct: 12 GGRGGMKTVSFAKIALLTAAMHK-RRFLCLREFINSIEDSVHAVLQAEVETLGLQVRFRV 70 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + + + + H + +EA Sbjct: 71 LNSCI--------------EGINDSIFKYGQLAR--NIASIKSKH--DFDVAWVEEAETV 112 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL------------EDWKRY 251 + +++ + W N +G Y F P ++ Sbjct: 113 SEKSLDTLIPTIRKPGSE-LWFSF-NPAEEDGAVYRRFVKPYKAIIDKQGYYEDDEVYVG 170 Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311 ++ + + + R G+ + I +++ A+ Sbjct: 171 KVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANYGDALIQPEWVDAAIDAHIK 230 Query: 312 D--DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETN 357 ++ D A G D+ + R G +IE WS + + Sbjct: 231 LGFKPSGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWSEGDVADAT 278 >gi|213423381|ref|ZP_03356369.1| putative prophage terminase large subunit [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 414 Score = 93.5 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 35/244 (14%), Positives = 79/244 (32%), Gaps = 22/244 (9%) Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 C + +++ +++ + + RH F + + + + Sbjct: 3 CCARQIQNKIEESVYTLLKIQIDRFGLRHRFRILNNKIINRV-------------TGSEF 49 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 + + + ++ +EA + K + + ++I N Sbjct: 50 VFYGLWR----NIEEIKSLEGIDVLWLEEAHALTEYQWKILEPTIRKEGSECWFIF--NP 103 Query: 231 RRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 + + + F P ED +I+ + + I + D + G Sbjct: 104 GLVTDFVWRNFVVDPPEDTLIRKINYDENPFLSDTMLKVIDAARRRDPEGFVHVYEGVPE 163 Query: 290 QQEVNNFIPHNYIEEAMSREAIDD--LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347 + I ++IE A+ + D +G D+A G DK V+R G++I + Sbjct: 164 SDDDAAIIKLSWIEAAVDAHKVLDFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADE 223 Query: 348 WSAK 351 W AK Sbjct: 224 WKAK 227 >gi|212703250|ref|ZP_03311378.1| hypothetical protein DESPIG_01292 [Desulfovibrio piger ATCC 29098] gi|212673294|gb|EEB33777.1| hypothetical protein DESPIG_01292 [Desulfovibrio piger ATCC 29098] Length = 330 Score = 93.5 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 60/173 (34%), Gaps = 15/173 (8%) Query: 197 NDE-ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-------IPLEDW 248 DE A P++ + + + + + T + F +++ W Sbjct: 1 MDEVAQMKPEVWGEVVQPALADRRGS---AVFIGTPKGANLFAELYQRGMAAQAQGDAAW 57 Query: 249 KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR 308 + + + + E + + R E+L F + IP + EA +R Sbjct: 58 CALSYPVTSTDVLPAEDVERLRRELSD--NAFRQEMLCDFTASSDDILIPLPDVLEAEAR 115 Query: 309 EAIDD--LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359 + D P+I+G D+A G D +V+V R+G ++ + Sbjct: 116 QLAWDDVGGMPVILGVDVARFGADSSVIVRRQGLKVDGPVVMRGLDNMQLADR 168 >gi|166012063|ref|ZP_02232961.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. E1979001] gi|167427125|ref|ZP_02318878.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|2996304|gb|AAC13184.1| P-loop protein [Yersinia pestis KIM 10] gi|165988997|gb|EDR41298.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. E1979001] gi|167053876|gb|EDR63708.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis str. K1973002] Length = 402 Score = 93.5 bits (230), Expect = 5e-17, Method: Composition-based stats. Identities = 37/257 (14%), Positives = 71/257 (27%), Gaps = 37/257 (14%) Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 P FK + AGR GK+ L+ ++ + + +A + + LW ++ + L Sbjct: 7 PHRFKV-VCAGRRWGKSRLSISTIIRAAAKEKKQRVWYVAPTYQMARQILWDDLQEVLPR 65 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 R + + + + D Sbjct: 66 KWVRKKNDTTMTIV---------------------LKNGSEIALKGADKPDTLRGVALHF 104 Query: 195 VFNDEAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE------- 246 V DE PD K + + ++ + F+ ++ I Sbjct: 105 VVLDEFQDMKPDTWYKVLRPTLSS--TRGGALIIGTP-KGFSEFHKLWTIGQNKDLQRKG 161 Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306 WK +Q T + S E + D E L F + P + Sbjct: 162 QWKSWQFVTADSPFVPSAEIEAAKNDM--DPKSFAQEYLASFENMSGRVYYPFD--RNVH 217 Query: 307 SREAIDDLYAPLIMGCD 323 + + P+ +G D Sbjct: 218 VKPLQFNPKLPIWVGQD 234 >gi|309797383|ref|ZP_07691776.1| phage terminase, large subunit, PBSX family [Escherichia coli MS 145-7] gi|308119007|gb|EFO56269.1| phage terminase, large subunit, PBSX family [Escherichia coli MS 145-7] Length = 418 Score = 93.1 bits (229), Expect = 6e-17, Method: Composition-based stats. Identities = 37/273 (13%), Positives = 75/273 (27%), Gaps = 37/273 (13%) Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 + V +H +P FK + AGR GK+ L+ ++ + + +A + Sbjct: 7 LSLVQLHSGQMKVFQSPHRFKV-VCAGRRWGKSRLSISTIIRAAAKEKKQRVWYVAPTYQ 65 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 + LW ++ + L R + + + Sbjct: 66 MARQILWDDLQEVLPRKWVRKKNDTTMTIV---------------------LKNGSEIAL 104 Query: 179 ERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 + D V DE D K + + ++ + F Sbjct: 105 KGADKPDTLRGVALHFVVLDEFQDMKADTWYKVLRPTLSS--TRGGALIIGTP-KGFSEF 161 Query: 238 YDIFNIPLE-------DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290 + ++ I WK +Q T + + E + D E L F Sbjct: 162 HKLWTIGQNVELQRKGQWKSWQFVTADSPFVPTAEIEAAKNDM--DPKSFAQEYLASFEN 219 Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323 + P + + + P+ +G D Sbjct: 220 MSGRVYYPFD--RNVHVKPLQFNPRLPIWVGQD 250 >gi|293411885|ref|ZP_06654610.1| predicted protein [Escherichia coli B354] gi|220980013|emb|CAP72205.1| Hypothetical protein [Escherichia coli LF82] gi|291469440|gb|EFF11929.1| predicted protein [Escherichia coli B354] gi|323934319|gb|EGB30739.1| PBSX family protein phage terminase [Escherichia coli E1520] Length = 418 Score = 93.1 bits (229), Expect = 6e-17, Method: Composition-based stats. Identities = 37/273 (13%), Positives = 75/273 (27%), Gaps = 37/273 (13%) Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 + V +H +P FK + AGR GK+ L+ ++ + + +A + Sbjct: 7 LSLVQLHSGQMKVFQSPHRFKV-VCAGRRWGKSRLSISTIIRAAAKEKKQRVWYVAPTYQ 65 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 + LW ++ + L R + + + Sbjct: 66 MARQILWDDLQEVLPRKWVRKKNDTTMTIV---------------------LKNGSEIAL 104 Query: 179 ERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 + D V DE D K + + ++ + F Sbjct: 105 KGADKPDTLRGVALHFVVLDEFQDMKADTWYKVLRPTLSS--TRGGALIIGTP-KGFSEF 161 Query: 238 YDIFNIPLE-------DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290 + ++ I WK +Q T + + E + D E L F Sbjct: 162 HKLWTIGQNVELQRKGQWKSWQFVTADSPFVPTAEIEAAKNDM--DPKSFAQEYLASFEN 219 Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323 + P + + + P+ +G D Sbjct: 220 MSGRVYYPFD--RNVHVKPLQFNPRLPIWVGQD 250 >gi|289805729|ref|ZP_06536358.1| putative prophage terminase large subunit [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 257 Score = 92.7 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 82/233 (35%), Gaps = 11/233 (4%) Query: 124 LWAEVSKWLSMLPHR--HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 ++A +++ + L +R ++++Q + L + + + + + Sbjct: 14 VFAALARSRTKLKNRFTRFYKIQIDRFGLRHRFRILNNKIINRVTGSEFVFYGLWR---- 69 Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241 + ++ +EA + K + + ++I N + + + F Sbjct: 70 NIEEIKSLEGIDVLWLEEAHALTEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNF 127 Query: 242 N-IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 P ED +I+ + + I + D + G + I + Sbjct: 128 VVDPPEDTLIRKINYDENPFLSDTMLKVIDAARRRDPEGFVHVYEGVPESDDDAAIIKLS 187 Query: 301 YIEEAMSREAIDD--LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 +IE A+ + D +G D+A G DK V+R G++I +W AK Sbjct: 188 WIEAAVDAHKVLDFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAK 240 >gi|170752064|ref|YP_001758324.1| PBSX family phage terminase large subunit [Methylobacterium radiotolerans JCM 2831] gi|170658586|gb|ACB27641.1| phage terminase, large subunit, PBSX family [Methylobacterium radiotolerans JCM 2831] Length = 440 Score = 92.7 bits (228), Expect = 8e-17, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 76/302 (25%), Gaps = 32/302 (10%) Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 P +K A GRG K+ ++ L + R + ++C + + + Sbjct: 4 EFPEKLDFLFEPHRYKIAY-GGRGGAKSWGFGRALVILGAQRK-LRVLCAREFQNSIAES 61 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 A +++ + +L H ++ Q + + + + R + Sbjct: 62 AHALLAQQIDLLGLSHLYDTQEKRILGTNGTEFIFK------------------GLRHNV 103 Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-N 242 + +EA ++ + WI NT Y F Sbjct: 104 ASVKSTEGVDVCWVEEARTVSKTSWDVLIPTIRKEGSE-IWISF-NTELAEDETYKRFVA 161 Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302 P + +I + + D G + + Sbjct: 162 KPPTGARVVKIGWEDNPWFPDVLRQEALDLKARDPIAYETVWGGNCKAVLDGAIYANEIL 221 Query: 303 ---EEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359 + D P+ D+ DKT + F + ++ E Sbjct: 222 AATTAKRFTKVPYDPTKPVHTFWDLGR--ADKTSIWFAQIVGF----EFRLIDFYENRGH 275 Query: 360 GC 361 Sbjct: 276 AL 277 >gi|121591052|gb|ABH10668.2| terminase subunit [Klebsiella phage KPP95] Length = 302 Score = 92.7 bits (228), Expect = 8e-17, Method: Composition-based stats. Identities = 35/282 (12%), Positives = 80/282 (28%), Gaps = 47/282 (16%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q + +E + T + R +GKTT+ A + + ++ Sbjct: 44 RDYQRDMLEIMAA--------KRMTCCNLS----RQLGKTTVVAIFLAHFVCFNKDKAVG 91 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 +A+ + L + + +LP E + S+ +D+ Sbjct: 92 ILAHKGSMSAEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSI- 138 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSN 229 + ++ DE + P+ +I + ++ I+ + Sbjct: 139 ------GAYASSPDAVRGNSFAMIYIDECAFIPNFIDAWLAIQPVISSGRRSK--IIITT 190 Query: 230 TRRLNGWFYDIFNIPLED----------WKRYQID-TRTVEGIDSGFHEGIISRYGLDSD 278 T FYDI+ +E W + + D G+ + + + Sbjct: 191 TPSGLNHFYDIWTAAVEGKSGFTPYTAIWNSVKERLYNDEDMFDDGWQWSLQTISASSLE 250 Query: 279 VARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIM 320 + E +F I + E D + + Sbjct: 251 QFKQEHCAEFHGTS-GTLISGMKLANMDWIEVTPDSHGFYNL 291 >gi|18496890|ref|NP_569740.1| putative terminase gp4 [Mycobacterium phage TM4] gi|4336041|gb|AAD17572.1| putative terminase gp4 [Mycobacterium phage TM4] Length = 474 Score = 92.3 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 42/354 (11%), Positives = 89/354 (25%), Gaps = 71/354 (20%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 WQ + + + + +F +I R GKT L ++ L P + Sbjct: 39 GFDLWQDDLGKLICA--KRDDGLYAADMFAMSI--PRQTGKTYLLGALVFALCIKTPNTT 94 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 +I A+ T + Q L+ L + Sbjct: 95 VIWTAHRTRTAAETFRSM----------------QGLAKRDKIAPHILNVHTGNGKEAVL 138 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 + G + DEA + ++ T PN ++ Sbjct: 139 FKNGSRILFGARERGFGRGFAGVDVLIFDEAQILTENAMDDMVPA-TNAAPNPLILLAGT 197 Query: 230 TRRLNGW------------------------FYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265 + D P + + +++ + Sbjct: 198 PPKPTDPGEVFTVMRLDALAGDVDDVGYVEISADEDADPDDRSQWRKMNPSYPHRTSARA 257 Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA----IDDLYAPLIMG 321 + G +S + E +G +P+ + ++ + +D AP + Sbjct: 258 ILRMRKALGDES--FKREAMGIWPKVS----VHQPVVKSGRWHDLFDLGPEDGEAPNALA 311 Query: 322 CDIAGE-----GGDKTVVVFRRGNIIEHIFDWSAKLI-------QETNQEGCPV 363 D++ G ++ G +E + W+ E PV Sbjct: 312 VDMSHGLAISVGACW--LMDDDGRHVEEV--WAGTDTAAAVDWIAERAGRRIPV 361 >gi|240850562|ref|YP_002971962.1| phage terminase, large subunit [Bartonella grahamii as4aup] gi|240267685|gb|ACS51273.1| phage terminase, large subunit [Bartonella grahamii as4aup] Length = 441 Score = 91.9 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 39/268 (14%), Positives = 74/268 (27%), Gaps = 30/268 (11%) Query: 84 AGRGIGKTTLNAWMMLW--LISTRPG--MSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 GRG GKT A M R G +I+C + L + E+ + + Sbjct: 27 GGRGSGKTRSFALMAALKGYQFGREGISGTILCARQFQNSLAESSLEEIKRAIE------ 80 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 L + + + I +S + + + DE Sbjct: 81 --AHDFLKDYYKVGESSIKSIDGRI--------AFQFSGLDRNIASIKSMGRILLCWVDE 130 Query: 200 ASGTPDIINKSILGFFTELN---PNRFWIMTSNTRRLNGWFYDIFNIPLED-WKRYQIDT 255 A + ++++ E W+ N R N F + KR +I+ Sbjct: 131 AEPVTETAWQTLIPTLREEGEGWRAELWVTW-NPLRENAPVEKRFRFSDNEAIKRVEINW 189 Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI---EEAMSREAID 312 +E + + + G + + + + +E Sbjct: 190 SDNPKFPKILNEARLDDLRNRPETYKHIWEGDYLKAVQGAYYQKEMLAAEQEGRIGRVAR 249 Query: 313 DLYAPLIMGCDIAGEG--GDKTVVVFRR 338 D + DI G G D T + + Sbjct: 250 DPLMQIRAFWDIGGTGAKADATAIWIAQ 277 >gi|291334416|gb|ADD94071.1| hypothetical protein GobsU_33659 [uncultured phage MedDCM-OCT-S04-C1035] gi|291334470|gb|ADD94124.1| hypothetical protein GobsU_33659 [uncultured phage MedDCM-OCT-S04-C1161] Length = 223 Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 30/243 (12%), Positives = 67/243 (27%), Gaps = 33/243 (13%) Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161 +S IA + Q K+ W + ++ + +P+ + E Sbjct: 1 MSKLKNPRFAYIAPTFKQAKSIAWDYMKQFTAKIPN-----------------TKFNETE 43 Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNP 220 + +D + + G + DE + + + I + + Sbjct: 44 LRVD----LPNGSRITLLGAENSDGLRGIYLDGCVIDEYANIDGKLFAEIIRPALS--DR 97 Query: 221 NRFWIMTSNTRRLNGWFYDIFNIP--LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278 + + +N FYD++ EDW Y+ + +D E G Sbjct: 98 KGYCVFIGTPAGMNNNFYDLYQHANGAEDWFNYKAKASDTKIVDPEELEKAKEVMGEKK- 156 Query: 279 VARIEILGQFPQQEVNNFIPHNYI---EEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335 E + ++ D P+ D+ D + ++ Sbjct: 157 -YLQEFECDWIANIEGAIYGEEIAKIEDKNQIARVPYDPTLPVSTAWDLGV--ADHSSII 213 Query: 336 FRR 338 F + Sbjct: 214 FFQ 216 >gi|87201130|ref|YP_498387.1| hypothetical protein Saro_3118 [Novosphingobium aromaticivorans DSM 12444] gi|87136811|gb|ABD27553.1| protein of unknown function DUF264 [Novosphingobium aromaticivorans DSM 12444] Length = 440 Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 47/277 (16%), Positives = 85/277 (30%), Gaps = 31/277 (11%) Query: 68 SNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 + P+ ++ + AGRG GKT L A + + P I + S + ++ + Sbjct: 42 RQSQQAPPSDWRVWLVMAGRGFGKTRLGAEWVRKIAEEDPEARIALVGASLHEARSVMVE 101 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 S LS + W + E S+ YS P++ Sbjct: 102 GESGLLS---------------IDAPWRRPVFESSVRRLVWPNGAQAFLYSAGEPES--- 143 Query: 187 PHNTHGMAVFNDEASGTPDI------INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240 + DE + + ++L R T R I Sbjct: 144 LRGPQHSHAWCDEIAKWDNGSNRAMATWDNLLMGLRLGRDPRLVAT--TTPRPVPLVARI 201 Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 + + + + F E + +G + + R E+LG+ + V Sbjct: 202 MDEGDDVVVTRGSTFENQDNLPRRFVEAMRRTFGGTT-LGRQELLGEMIEDLVGALWSRA 260 Query: 301 YIEEAMSREAIDDLYAPLIMGCD-IAGEGGDKTVVVF 336 IE A RE +++G D A GD ++ Sbjct: 261 LIENA--REDAAPAMTRVVVGVDPPASAHGDACGIIV 295 >gi|292905266|ref|YP_003541137.1| hypothetical protein Ava_D0014 [Anabaena variabilis ATCC 29413] gi|75705004|gb|ABA24679.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413] Length = 484 Score = 91.2 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 51/353 (14%), Positives = 89/353 (25%), Gaps = 49/353 (13%) Query: 26 LSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAG 85 F F W E + + V +I A Sbjct: 34 NDFAYFAEYV-------TGKTAAEHHLEWITELVTGISSQTLELVAGD-----NLSILAP 81 Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM----------L 135 RG K+T A + W+I P + II ++ SE+ + + + + L Sbjct: 82 RGSAKSTWIAMWVAWVIGHNPSIQIIYVSYSESVALSRS-RIIKRIIESPKYREVFPNVL 140 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 P + W + L + S+ + + Sbjct: 141 PGKRWSDTDWEIRKDFAGVDSLDSDYTFYATGITGSITSRRSDLVVYDDIIKSSESIENP 200 Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ--- 252 E ++ I R + F + Q Sbjct: 201 EVRE--KITTNYSEVIRPTLKPGGRQVN---IGTRFRADDIHCTDFIPAKGWKQIVQQAI 255 Query: 253 ---IDTRTVEGIDSGFHEGIISRYGLDSDV-ARIEILGQFPQQEVNNFIPHNYIEEAMSR 308 D + V F + DS V + + + + P +I+ Sbjct: 256 VDDDDGKEVSYWPERFTLEELQALREDSPVAFSFQYQNRVMRSSETSIDPL-WIKHG--- 311 Query: 309 EAIDDLYAPLIMGCDIA---GEGGDKTVVVF--RRGNIIEHIF----DWSAKL 352 D + L +G D++ E D TV V R GN + WS + Sbjct: 312 -EFPDHFDSLCIGGDLSASLRERADYTVFVLGGRVGNKFYILDIRRGRWSGNI 363 >gi|109290130|ref|YP_656379.1| gp17 terminase subunit [Aeromonas phage 25] gi|104345803|gb|ABF72703.1| gp17 terminase subunit [Aeromonas phage 25] Length = 612 Score = 91.2 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 44/376 (11%), Positives = 92/376 (24%), Gaps = 76/376 (20%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + R + ++ L E C F + + +Q + + Sbjct: 83 LKRANIKIKWTKEMLAERK---RCKEDIVYFAENYCCIEHIDYGIIRVQ-LRDYQKDMLR 138 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + + N S R +GKTT+ A + + ++ +A+ + Sbjct: 139 IMAGNRLMAANLS------------RQLGKTTVVAIFLAHFVCFNSAKNVGILAHKASMS 186 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 L + L +LP E + S+ + + + Sbjct: 187 AEVLHR-TKQALELLPD-----------FLQPGIVEWNKGSITLGNGCAIGAFSS----- 229 Query: 181 PDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 + ++ DE + P + +I + I+ + T +Y Sbjct: 230 --SPDAVRGNSFALIYIDEVAFIPNFNDAWLAIQPVISSG--RHSKILMTTTPNGLNHWY 285 Query: 239 DIFNIP----------LEDWKRYQIDTRTVEGIDSG-----------FHEGIISRYGLDS 277 DI+ + Y +V+ I+ + Sbjct: 286 DIWTAAITPNSDGSGSKSGFVPYTATWSSVKERMYSDGSKTDGAIHILTTDILGQPRQSP 345 Query: 278 ----DVARIEILGQFPQQEVNNFIPHNYIEEAMSREA----------IDDLYAPLIMGCD 323 + E F Q I + + +E I D Sbjct: 346 VLALRAFQQEHNTAF-QGTSGTLINGFKLSKMTWKEVPASDNFTMFKEPIEGHKYIATLD 404 Query: 324 IA-GEGGDKTVVVFRR 338 A G G D + Sbjct: 405 SAEGRGQDYHAMHIYD 420 >gi|294338167|emb|CBJ94203.1| Putative phage DNA packaging protein (terminase) [Campylobacter phage CPt10] Length = 731 Score = 91.2 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 43/307 (14%), Positives = 87/307 (28%), Gaps = 53/307 (17%) Query: 63 DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN 122 HC+ + + + + K+T + + L + ++I +A S + Sbjct: 259 YDHCYDLTLEHHHLYYTNGVLS-HNSSKSTTTSVKLAHLYCFKKDINIGIVAYSGNSARE 317 Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182 L + + + + S+ ++ +T S Sbjct: 318 FLDKTKKMLIGL------------PIWMQPGTVTWNKGSIECENNIKILTDVPSS----- 360 Query: 183 TFVGPHNTHGMAVFNDEASGTPDIINKSILGFF--TELNPNRFWIMTSNTRRLNGWFYDI 240 T + DE + ++ ++ +T + FYDI Sbjct: 361 --DAFRGTSTNIIVVDECAYLDPAGWIDFTDGVLPSQAGLAFKKLVILSTPKGKNHFYDI 418 Query: 241 FNIPLE-------DWKRYQIDTRTVEGI--------DSGFHEGIISRYGLDSDVARIEIL 285 + + + R+++D R V F + I GL V Sbjct: 419 WQGAGDTLETSINGFVRHRVDWRLVPRFKSDGTKYDPEEFKQQQIKTGGL--VVWNSAYE 476 Query: 286 GQF--------PQQEVNNFIPHNYIEEAMSRE------AIDDLYAPLIMGCDIAGEGGDK 331 +F P + ++ + P IE ++ +MG D A EG D Sbjct: 477 CKFEGSAMTLIPSEILDTYKPQEPIEVDNIKDSKILIYEEPIPGHKYVMGVDTAKEGADF 536 Query: 332 TVVVFRR 338 T V Sbjct: 537 TGVQIFD 543 >gi|294337972|emb|CBJ93810.1| putative phage DNA packaging protein (terminase) [Campylobacter phage CP220] Length = 744 Score = 91.2 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 43/307 (14%), Positives = 87/307 (28%), Gaps = 53/307 (17%) Query: 63 DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN 122 HC+ + + + + K+T + + L + ++I +A S + Sbjct: 259 YDHCYDLTLEHHHLYYTNGVLS-HNSSKSTTTSVKLAHLYCFKKDINIGIVAYSGNSARE 317 Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182 L + + + + S+ ++ +T S Sbjct: 318 FLDKTKKMLIGL------------PIWMQPGTVTWNKGSIECENNIKILTDVPSS----- 360 Query: 183 TFVGPHNTHGMAVFNDEASGTPDIINKSILGFF--TELNPNRFWIMTSNTRRLNGWFYDI 240 T + DE + ++ ++ +T + FYDI Sbjct: 361 --DAFRGTSTNIIVVDECAYLDPAGWIDFTDGVLPSQAGLAFKKLVILSTPKGKNHFYDI 418 Query: 241 FNIPLE-------DWKRYQIDTRTVEGI--------DSGFHEGIISRYGLDSDVARIEIL 285 + + + R+++D R V F + I GL V Sbjct: 419 WQGAGDTLETSINGFVRHRVDWRLVPRFKSDGTKYDPEEFKQQQIKTGGL--VVWNSAYE 476 Query: 286 GQF--------PQQEVNNFIPHNYIEEAMSRE------AIDDLYAPLIMGCDIAGEGGDK 331 +F P + ++ + P IE ++ +MG D A EG D Sbjct: 477 CKFEGSAMTLIPSEILDTYKPQEPIEVDNIKDSKILIYEEPIPGHKYVMGVDTAKEGADF 536 Query: 332 TVVVFRR 338 T V Sbjct: 537 TGVQIFD 543 >gi|49475696|ref|YP_033737.1| Phage related protein [Bartonella henselae str. Houston-1] gi|49238503|emb|CAF27734.1| Phage related protein [Bartonella henselae str. Houston-1] Length = 441 Score = 91.2 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 42/299 (14%), Positives = 78/299 (26%), Gaps = 37/299 (12%) Query: 79 KCAISA---GRGIGKTTLNAWMMLW----LISTRPGMSIICIANSETQLKNTLWAEVSKW 131 K A+ A GRG GKT A M +I+C + L + E+ + Sbjct: 19 KAAVRAAWGGRGSGKTRSFALMAALKGYQFGMGGISGTILCARQFQNSLAESSLEEIKRA 78 Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191 + +Y ID + +S + Sbjct: 79 IE------------GHDFLKDYYKVGESSIKSIDGR----IAFQFSGLDRNIASIKSMGR 122 Query: 192 GMAVFNDEASGTPDIINKSILGFFTELN---PNRFWIMTSNTRRLNGWFYDIFNIPLED- 247 + + DEA + ++++ E W+ N R N F + Sbjct: 123 ILLCWVDEAEPVTETAWQTLIPTLREEGEGWRAELWVTW-NPLRDNAPVERRFRFSNNEA 181 Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI---EE 304 KR +I+ +E + + + G + + + +E Sbjct: 182 IKRVEINWSDNPKFPKILNEARLDDLKNRPETYKHIWEGAYLTAVQGAYYQKEMLAAEQE 241 Query: 305 AMSREAIDDLYAPLIMGCDIAGEG--GDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC 361 D + DI G G D T + + + E + Sbjct: 242 GRIGRVARDPLMQMRAFWDIGGTGAKADATAIWIAQ----FVGREIRVLDYYEAQGQPL 296 >gi|80159854|ref|YP_398598.1| conserved phage-related protein [Clostridium phage c-st] gi|78675444|dbj|BAE47866.1| conserved phage-related protein [Clostridium phage c-st] Length = 580 Score = 91.2 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 47/388 (12%), Positives = 100/388 (25%), Gaps = 66/388 (17%) Query: 6 STDQKLEQE--LHEMLMHAECVLSFKNFVMRF--FPWGIKGKPLEHFSQPHRWQLEFMEA 61 S D +++ LH + F + G L F Q + A Sbjct: 27 SYDPIKDKKDGLHTEEWEKYI----SYYRKYIDKFCIEVLGLKLYLF------QRLILRA 76 Query: 62 VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121 + + + + RG+GK+ L+A + G+ + Q + Sbjct: 77 MARNQY------------VMLICCRGLGKSWLSAVFFVASCILYKGLKCGIASGQGQQAR 124 Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 N + +V L+ P + + + Sbjct: 125 NVIIQKVKGELAKNP-------SIAREIVFPIKTGADDCVVNFRNGSEIRAIVLGR---- 173 Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT----------ELNPNRFWIMTSNT- 230 + G + + DE D + +IL T I S+ Sbjct: 174 NQGDGARSWRFHYLLVDECRLVSDKVINTILIPMTKTKRAVAIHHNKREKGKVIFISSAY 233 Query: 231 ------RRLNGWFYDIFNIPLEDWKRYQIDTR---TVEGIDSGFHEGIISRYGLDSDVAR 281 + +F D + ++ +D R D + ++ + + + Sbjct: 234 LKTSDLYKRFKYFCDKMSSGANNYFVCSLDYRVGIEAGIFDQDDIDEERNKPDMTIEEFQ 293 Query: 282 IEILGQFPQQEVNNFIPHNYIEEAM-----SREAIDDLYAPLIMGCDIAGEG---GDKTV 333 E G F ++ P+ A + I+ D+A G D Sbjct: 294 YEYEGIFVGSSGESYFPYETTTPARVLGRGEITQPKKSKSEYIITHDVAISGASDSDNAC 353 Query: 334 VVFRRGNIIEHIFDWSAKLIQETNQEGC 361 + + + +++ G Sbjct: 354 THVIK-LKPKPNGTYVKEVVYTKTHNGI 380 >gi|163868206|ref|YP_001609414.1| phage related protein [Bartonella tribocorum CIP 105476] gi|163869068|ref|YP_001610302.1| hypothetical protein Btr_2286 [Bartonella tribocorum CIP 105476] gi|161017861|emb|CAK01419.1| phage related protein [Bartonella tribocorum CIP 105476] gi|161018749|emb|CAK02307.1| phage-related protein [Bartonella tribocorum CIP 105476] Length = 442 Score = 90.8 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 75/291 (25%), Gaps = 34/291 (11%) Query: 84 AGRGIGKTTLNAWMMLW----LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 GRG GKT A M +I+C + L + E+ + + Sbjct: 27 GGRGSGKTRSFALMAALKGYQFGMQGISGTILCARQFQNSLAESSLEEIKRAIE------ 80 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 LS + A + I +S + + + DE Sbjct: 81 --AHDFLSEYYKVGEASIKSNDGRI--------AFQFSGLDRNIASIKSMGRILLCWVDE 130 Query: 200 ASGTPDIINKSILGFFTELN---PNRFWIMTSNTRRLNGWFYDIFNIPLED-WKRYQIDT 255 A + ++++ E W+ N R N F + KR +I+ Sbjct: 131 AEPVTETAWQTLIPTLREEGDGWRAELWVTW-NPLRDNAPVESRFRFSDNEAIKRVEINW 189 Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI---EEAMSREAID 312 +E + + + G + + + +E Sbjct: 190 SDNPKFPKILNEARLDDLRNRPETYKHIWEGAYLTAVQGAYYQKEMLAAEQEGRIGRVAR 249 Query: 313 DLYAPLIMGCDIAGEG--GDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC 361 D + DI G G D T + + + E + Sbjct: 250 DPLMQIRAFWDIGGTGAKADATAIWIAQ----FVGREIRVLDYYEAQGQPL 296 >gi|161525001|ref|YP_001580013.1| hypothetical protein Bmul_1828 [Burkholderia multivorans ATCC 17616] gi|189350256|ref|YP_001945884.1| bacteriophage TerL protein [Burkholderia multivorans ATCC 17616] gi|160342430|gb|ABX15516.1| conserved hypothetical protein [Burkholderia multivorans ATCC 17616] gi|189334278|dbj|BAG43348.1| bacteriophage TerL protein [Burkholderia multivorans ATCC 17616] Length = 531 Score = 90.8 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 76/279 (27%), Gaps = 22/279 (7%) Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 R +G + L + + G++ + E E + W + Sbjct: 101 RDMGMSWLTVGLADTICLFHEGVAAGFGSRKE---------EYVDKIGSPKSLFWKAREF 151 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 L L P+ + + + + +G DE++ Sbjct: 152 LRLLPAEFRGSWDIGTHAPHMRIIFPDTGSVITGESGDGIG-RGDRASFYIVDESAFLER 210 Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265 T S + F + K + R D + Sbjct: 211 PQLVDASLSATTNCRQD----ISTPNGMGNSFAQRRH--SGKVKVFTFHWRDDPRKDDAW 264 Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCD 323 + LD V EI + IP +++ A+ + G D Sbjct: 265 Y--AKQCAELDPVVVAQEIDINYAASVEGVVIPSAWVQAAIGAHLKLGIEPSGTRRGGLD 322 Query: 324 IAGEGGDKTVVVFRRGNIIEHIFDWSAK--LIQETNQEG 360 +A EG DK R G ++ + WS K I ET ++ Sbjct: 323 VADEGKDKNAFAGRYGFLLNFLRSWSGKGGDIYETVEKT 361 >gi|221199508|ref|ZP_03572552.1| phage terminase, large subunit, pbsx family [Burkholderia multivorans CGD2M] gi|221205590|ref|ZP_03578605.1| phage terminase, large subunit, pbsx family [Burkholderia multivorans CGD2] gi|221174428|gb|EEE06860.1| phage terminase, large subunit, pbsx family [Burkholderia multivorans CGD2] gi|221180793|gb|EEE13196.1| phage terminase, large subunit, pbsx family [Burkholderia multivorans CGD2M] Length = 425 Score = 90.8 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 37/295 (12%), Positives = 80/295 (27%), Gaps = 34/295 (11%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 P ++ GRG GKT A +L + +P + ++C + +K +++A + + Sbjct: 11 FEPQWRFISVRGGRGSGKTVNFARALLIRATQKP-LRVLCTREVQDSIKESVYATLVSEM 69 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 + F++ S + P A R S+ D Sbjct: 70 KKMGLESHFDVLSNEIRPKLGGA---------------FIFRGLSDMTADNVKSL--ADI 112 Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF--NIPLEDWKR 250 + +EA + + + W+ N + Y Sbjct: 113 DIAWVEEAQTITENSFRKLTPSIRAPGSQ-IWLSW-NPELETDFIYQKVVIEGLPNCASL 170 Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE---EAMS 307 + ++ G D D+ R LG + + E Sbjct: 171 F-VNFDQNPWFPDELRLEEQDMKGKDPDMHRHVWLGMPLPAVAGAIYFNEISQMESEGRL 229 Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHI-FDWSAKLIQETNQEGC 361 D + D+ D T +++ + ++ E ++ Sbjct: 230 LNIPIDDGLNTYIIMDLGF--NDFTSC-----PVVQQVGGEFRIVDFFENRRKPL 277 >gi|211731828|gb|ACJ10140.1| terminase [Bacteriophage APSE-6] Length = 469 Score = 90.4 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 35/288 (12%), Positives = 77/288 (26%), Gaps = 35/288 (12%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GRG KT A + L S +C+ +++++ A + + L + F + Sbjct: 12 GGRGGMKTVSFAKIALITASMHK-RRFLCLREFMNSIEDSVHAVLQAEVETLGLQVRFRV 70 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + + + + H + +EA Sbjct: 71 LNSCI--------------EGINDSIFKYGQLAR--NIASIKSKH--DFDVAWVEEAETV 112 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL------------EDWKRY 251 + +++ + + N +G Y F P +D Sbjct: 113 SEKSLDTLIPTIRKPGSELRFSF--NPAEEDGAVYKRFVKPYKAIIDKQGYYEDDDLYVG 170 Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311 + + + R G+ + I ++ A+ Sbjct: 171 NVSYLDNPWLPVELKNDAQKMKRENYKKWRHVYGGECDANYEDALIQPEWVGAAIDAHIK 230 Query: 312 D--DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETN 357 ++ D AG G D+ + R G +IE W + + Sbjct: 231 LGFKPSGIRVVTFDPAGSGQDEKALSKRYGVLIEDCVSWLEGDVADAT 278 >gi|310815629|ref|YP_003963593.1| Putative large terminase [Ketogulonicigenium vulgare Y25] gi|308754364|gb|ADO42293.1| Putative large terminase [Ketogulonicigenium vulgare Y25] Length = 427 Score = 90.4 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 36/294 (12%), Positives = 75/294 (25%), Gaps = 36/294 (12%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAI-SAGRGIGKTTLNAWMMLWLIST-RPG----- 107 Q+ + + ++ + GRG GKT A + ++ RP Sbjct: 8 QIAALPWLFEFWALPHQLPPSGDWRTWVIMGGRGAGKTRAGAEWVRSMVEGPRPDTPGRA 67 Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 + IA + Q + + S ++ P E + Sbjct: 68 KRVGLIAQTMDQAREVMVFGDSGLMACCPPARRPEWIAGRAMLR---------------- 111 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWI 225 A++ DE + ++ + R + Sbjct: 112 --WPNGAEARLFSAHDPEALRGPQFDAIWADEVAKWRLAQEAWDMLVMGLRLGDDPRACL 169 Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285 T G F + + GF + S + R E+ Sbjct: 170 ---TTTPRGGPFLRKLLAQSGTVMTHAPTRANRANLAPGFV-AAVEAMFEGSHLGRQELD 225 Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVVVF 336 G + P + ++ A+ R+A +++ D G D ++ Sbjct: 226 GLLVDEAEGTLWPQHLLDAALQRQAPP--LDRIVVAVDPPVTGHAGSDACGIIV 277 >gi|319405798|emb|CBI79424.1| phage related protein [Bartonella sp. AR 15-3] Length = 441 Score = 90.4 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 40/299 (13%), Positives = 80/299 (26%), Gaps = 37/299 (12%) Query: 79 KCAISA---GRGIGKTTLNAWMMLW----LISTRPGMSIICIANSETQLKNTLWAEVSKW 131 + A+ A GRG GKT A M +I+C + L + E+ + Sbjct: 19 RAAVRAAWGGRGSGKTRSFALMAALKGYQFGMGGISGTILCARQFQNSLAESSLEEIKRA 78 Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191 + L + + + + I +S + Sbjct: 79 VE--------AHDFLKDYYKVGESTIKSKDGRI--------SFQFSGLDRNIASIKSMGR 122 Query: 192 GMAVFNDEASGTPDIINKSILGFFTELN---PNRFWIMTSNTRRLNGWFYDIFNIPLED- 247 + + DEA + ++++ E W+ N R N F + Sbjct: 123 ILLCWVDEAEPVTETAWQTLIPTLREEGDGWRAELWVTW-NPLRENAPVERRFRFSENEG 181 Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI---EE 304 K +I+ +E + ++ + G + + + + +E Sbjct: 182 IKGVEINWSDNPKFPQILNEARLDDLKNRAESYQHIWEGGYLKAVQGAYFQKEMLAAEQE 241 Query: 305 AMSREAIDDLYAPLIMGCDIAGEG--GDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC 361 D L DI G G D T + + + E + Sbjct: 242 GRIGRVARDPLMQLRAFWDIGGTGAKADATAIWIAQ----FVGREIRVLDYYEAQGQPL 296 >gi|332091158|gb|EGI96248.1| phage terminase large subunit [Shigella dysenteriae 155-74] Length = 346 Score = 90.4 bits (222), Expect = 5e-16, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 58/161 (36%), Gaps = 5/161 (3%) Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252 ++ +EA + K + + ++I N + + + F P E + Sbjct: 1 MLWLEEAHALTEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEGTLIRK 58 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 I+ + + I + D D + G + I ++IE A+ Sbjct: 59 INYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAAVDAHKTL 118 Query: 313 --DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 + +G D+A G DK V+R G+++ +W AK Sbjct: 119 NFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAK 159 >gi|240850378|ref|YP_002971772.1| phage terminase, large subunit [Bartonella grahamii as4aup] gi|240267501|gb|ACS51089.1| phage terminase, large subunit [Bartonella grahamii as4aup] Length = 444 Score = 90.0 bits (221), Expect = 5e-16, Method: Composition-based stats. Identities = 39/268 (14%), Positives = 73/268 (27%), Gaps = 30/268 (11%) Query: 84 AGRGIGKTTLNAWMMLW--LISTRPG--MSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 GRG GKT A M R G +I+C + L + E+ + + Sbjct: 29 GGRGSGKTRSFALMAALKGYQFGREGISGTILCARQFQNSLAESSLEEIKRAIE------ 82 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 L + + + I +S + + + DE Sbjct: 83 --AHDFLKDYYKVGESSIKSIDGRI--------AFQFSGLDRNIASIKSMGRILLCWVDE 132 Query: 200 ASGTPDIINKSILGFFTELN---PNRFWIMTSNTRRLNGWFYDIFNIPLED-WKRYQIDT 255 A + ++++ E W+ N R N F + KR +I+ Sbjct: 133 AEPVTETAWQTLIPTLREEGEGWRAELWVTW-NPLRENAPVEKRFRFSDNEAIKRVEINW 191 Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI---EEAMSREAID 312 +E + + + G + + + +E Sbjct: 192 SDNPKFPKILNEARLDDLRNRPETYKHIWEGAYLTAVQGAYYQKEMLAAEQEGRIGRVAR 251 Query: 313 DLYAPLIMGCDIAGEG--GDKTVVVFRR 338 D + DI G G D T + + Sbjct: 252 DPLMQIRAFWDIGGTGAKADATAIWIAQ 279 >gi|83950455|ref|ZP_00959188.1| Putative large terminase [Roseovarius nubinhibens ISM] gi|83838354|gb|EAP77650.1| Putative large terminase [Roseovarius nubinhibens ISM] Length = 434 Score = 90.0 bits (221), Expect = 5e-16, Method: Composition-based stats. Identities = 38/296 (12%), Positives = 80/296 (27%), Gaps = 36/296 (12%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134 AI GRG GKT A + + I + + Q++ + S L+ Sbjct: 41 AIMGGRGAGKTRAGAEWVRAAVEGATPGAPGRCRRIALVGETVDQVREVMIFGESGILAC 100 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 P E Q+ + Sbjct: 101 SPPDRRPEWQASRRRL------------------VWPNGAEAAVFSAHDPEALRGPQFDG 142 Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252 + DE + + + + + T R G D+ P Q Sbjct: 143 AWLDEMAKWKKARATWDMLQFALRLGDDPQICVT--TTPRNVGVLKDVLAAPS--TVVTQ 198 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 T + + + + + R E+ G ++ ++ A R + Sbjct: 199 APTEANRAHLAESFLAEVRARYVGTRLGRQELDGILLEEAEGALWSLAALDAA--RVSKL 256 Query: 313 DLYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC-PVG 364 + +++ D G D+ ++ + + +W A ++ + + G P G Sbjct: 257 PELSRIVVAVDPPVTGHAGSDECGIIVAGVDQSGPVQEWRAYVLADRSVSGMSPTG 312 >gi|218296139|ref|ZP_03496908.1| protein of unknown function DUF264 [Thermus aquaticus Y51MC23] gi|218243516|gb|EED10045.1| protein of unknown function DUF264 [Thermus aquaticus Y51MC23] Length = 426 Score = 90.0 bits (221), Expect = 5e-16, Method: Composition-based stats. Identities = 48/305 (15%), Positives = 91/305 (29%), Gaps = 40/305 (13%) Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124 H F + GR GKTTL + + R G ++ A + L Sbjct: 13 HPAQREVVGAAKRFNL-LRCGRRWGKTTLLLRLAAQAAAER-GQAVGWFAPIYSLLAPA- 69 Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184 + E+ + R Q + + SG E Sbjct: 70 YEELLRRTRPGVVRAAERPQPVIRYVSGGRIEFWSLDSKDVPG----------------- 112 Query: 185 VGPHNTHGMAVFNDEASGTP---DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241 DEA+ P + ++IL + + + ++T + FY+++ Sbjct: 113 ---RGRAYDLAIIDEAAFAPSLARVWEEAILPTLLDRLGSAW---IASTPKGRNAFYELW 166 Query: 242 NIPLED--WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299 N+ L+D W + + + + + + R EIL ++ Sbjct: 167 NLTLDDPAWAHFHEPSHRNPFLSQEELARMAATMTRE--RYRQEILAEWVD-AEGRVFSE 223 Query: 300 NYIEEAMSREAIDD--LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEH---IFDWSAKLIQ 354 + +E A+ + +D G D+A D T V R + W Sbjct: 224 DALEAALLLQGPEDPRPGERYAAGVDLARS-QDYTAVAVLRLGAQLELVRVERWRGLSYT 282 Query: 355 ETNQE 359 T ++ Sbjct: 283 LTARK 287 >gi|163792602|ref|ZP_02186579.1| hypothetical protein BAL199_17183 [alpha proteobacterium BAL199] gi|159182307|gb|EDP66816.1| hypothetical protein BAL199_17183 [alpha proteobacterium BAL199] Length = 422 Score = 90.0 bits (221), Expect = 6e-16, Method: Composition-based stats. Identities = 43/274 (15%), Positives = 79/274 (28%), Gaps = 27/274 (9%) Query: 68 SNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 ++ I AGRG GKT A + L + I +A + ++ + Sbjct: 30 RPKQLPPAGDWRVWLILAGRGFGKTRTGAEWVRGLAESGRARRIALVAETAADARDVMIE 89 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 S L+ + + + + D Sbjct: 90 GESGLLACCAPWGRPKYEPSKRRVT------------------WPNGAIATSFSADDPDQ 131 Query: 187 PHNTHGMAVFNDEASGTP-DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL 245 A + DE + + +++ R + + T + W + P Sbjct: 132 LRGPQFDAAWADEIAKWRYEAAWDNLMLGLRLGADPR--CVATTTPKPRAWLARLMADP- 188 Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA 305 + GF + I++RY + R EI G+F + IE A Sbjct: 189 GTVVTRGATRENAGNLAPGFLDQILARYAGT-RLGRQEIDGEFLTEIPGALWTRTLIEGA 247 Query: 306 MSREAIDDLYAPLIMGCDIAGEGG---DKTVVVF 336 + A +I+ D A G D+T +V Sbjct: 248 RALPGAVPGLARIIVAVDPAVTSGSDSDETGIVV 281 >gi|304360765|ref|YP_003856886.1| gp8 [Mycobacterium phage Angelica] gi|302858349|gb|ADL71097.1| gp8 [Mycobacterium phage Angelica] Length = 473 Score = 89.6 bits (220), Expect = 8e-16, Method: Composition-based stats. Identities = 42/351 (11%), Positives = 84/351 (23%), Gaps = 68/351 (19%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +WQ + + V + +F +I R GKT ++ PG ++I Sbjct: 43 DQWQDDLGKLVCA--KRSDGLYAADMFAMSI--PRQTGKTYFLGAIVFAFCKMNPGTTVI 98 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A+ T + Q+L+ L + Sbjct: 99 WTAHRTRTAAETFKSM----------------QALAKREQIAPHILNVHTGNGKEAVLFT 142 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 + G + DEA + ++ T +PN + Sbjct: 143 NGSRILFGAREKGFGRGFAKVDVLIFDEAQILSENAMDDMIPA-TNASPNGLILFAGTPP 201 Query: 232 RLNGW------------------------FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267 + D + P E+ +++ + Sbjct: 202 KPTDPGEVFTNLRMDALNGESDDVAYVEISADENDDPDEESTWRKMNPSYPHRTSARAIR 261 Query: 268 GIISRYGLDSDVARIEILGQFPQ-QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAG 326 + DS R E +G + + I + + P +G D++ Sbjct: 262 RMRKALSWDS--FRREAMGIWDKISVHAQVIKAGLWRDLADPLGPEPGAKPASLGVDMSH 319 Query: 327 EGGDKTVV-----VFRRGN--IIEHIFDWSAKLIQ-------ETNQEGCPV 363 G + +E + W+ E PV Sbjct: 320 GG----AISIGGCWLIDDELRHVEQV--WAGTDTAAAVEFIVERAGRRIPV 364 >gi|329888629|ref|ZP_08267227.1| phage DNA packaging protein [Brevundimonas diminuta ATCC 11568] gi|328847185|gb|EGF96747.1| phage DNA packaging protein [Brevundimonas diminuta ATCC 11568] Length = 411 Score = 89.2 bits (219), Expect = 8e-16, Method: Composition-based stats. Identities = 39/277 (14%), Positives = 74/277 (26%), Gaps = 21/277 (7%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 E + F+ A GRG K+ ++ T P + ++ + Sbjct: 2 IYEPIPAFRFLTAKPLGSYRFRAA-HGGRGSAKSWSVVDAAIFHTVTTPRLRVVFLREIM 60 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177 L + V K L G Y + + + + Sbjct: 61 ANLTESSLELVRKRLEHFG-------------LLGSYFREVNGTFQGLGGQKIMFIGLWK 107 Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 +P+ +EA +L + W + N R Sbjct: 108 GGKPEGIKSLEGAG--LTILEEAQEVRQASLDVLLPTILRTAISELWAIW-NPRLDTDPI 164 Query: 238 YDIFNIPL--EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN 295 F P+ + +I+ E + + D A LG + Sbjct: 165 DVFFRGPVKPKGAIVRKINYDQNPHFPDALRELMELDFSKDKLRAAWIWLGGYMPSVQGA 224 Query: 296 FIPHNYIEEAMS--REAIDDLYAPLIMGCDIAGEGGD 330 ++EA R A + + +++G D +G G D Sbjct: 225 IWNREGLDEAWREGRHAPEGSWGRVVVGVDPSGGGDD 261 >gi|312126991|ref|YP_003991865.1| hypothetical protein Calhy_0759 [Caldicellulosiruptor hydrothermalis 108] gi|311777010|gb|ADQ06496.1| conserved hypothetical protein [Caldicellulosiruptor hydrothermalis 108] Length = 444 Score = 89.2 bits (219), Expect = 8e-16, Method: Composition-based stats. Identities = 48/288 (16%), Positives = 84/288 (29%), Gaps = 35/288 (12%) Query: 79 KCAIS-AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 K I AGR GK+T+ ++ +T+ A S Q K + E + + Sbjct: 48 KVQIKVAGRRFGKSTVTLIDVVHECATKTKQVWYITAPSIDQAK-IYFQEFEQ--RAANN 104 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + + + + + T V V Sbjct: 105 SLLDALVKDFKWSPFP-------EITLINGSKILGRSTSR-----NGVYLRGKGADGVAI 152 Query: 198 DEASGTPDIIN-KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED----WKRYQ 252 EA+ D + I + N + T + Y +F L D +K + Sbjct: 153 TEAAFIKDKVYHDVIRAMVLDRNG---VLRLETTPNGMNYVYKLFQEGLNDSTGYYKSFH 209 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY---IEEAMSRE 309 E +D E I RIE L +F + + + P N + + + Sbjct: 210 ATVYDNERLDREELERIRREIPE--LAWRIEYLAEFVE-DDSFIFPWNLLCEVFDDYELK 266 Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVF----RRGNIIEHIFDWSAKLI 353 +G D+A D TV++ R I + +L Sbjct: 267 KEPQNGHRYSIGVDLAKY-QDYTVIIVLDITREPYQIVEYHRYQGRLY 313 >gi|315655961|ref|ZP_07908859.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333] gi|315490025|gb|EFU79652.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333] Length = 460 Score = 89.2 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 42/319 (13%), Positives = 88/319 (27%), Gaps = 43/319 (13%) Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124 H ++ + + + GRG GKT A ++ PG I +A E+ +++ Sbjct: 43 HARASQHPPTGAWTEWLLMTGRGWGKTRTAAELVRDWA-KNPGTQIAVVAKKESLVRSIC 101 Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184 + H + + + + T + Sbjct: 102 FE-----HKTSGLLHVIPKSDQARFNASGGSGRFFLQLK--------NGSTIYGFGAEVP 148 Query: 185 VGPHNTHGMAVFNDEASGT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240 + DE + + + E ++ S T + D+ Sbjct: 149 DNLRGFAFDKAWFDEFAAWNKQTAQEVYDMMWYDLRE--SPSPQMVISTTPKPLKHVRDL 206 Query: 241 FNIPLEDWKRYQIDTRTV-EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299 + P + T+ + + E + YG + R E+ G+ + Sbjct: 207 VSKP--GVVITRGHTKDNLPNLSAIALEKLERDYGKT-RLGRQELAGELIESIEGALWDV 263 Query: 300 NYIEEAMSREAIDDLYAPLIMGCDIAG---EGGDKTVV---------------VFRRGNI 341 ++ + R +++G D A EG D T G I Sbjct: 264 TMFQDPVFRPDTMPPLEDIVVGVDPAVRSSEGADMTAFTVAARAEDAPGMFPDHLNHGYI 323 Query: 342 IEHI-FDWSAKLIQETNQE 359 +E I ++ + E Sbjct: 324 LEAIQGHYTPRDAMAKAGE 342 >gi|294677220|ref|YP_003577835.1| terminase-like family protein [Rhodobacter capsulatus SB 1003] gi|294476040|gb|ADE85428.1| terminase-like family protein [Rhodobacter capsulatus SB 1003] Length = 455 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 45/292 (15%), Positives = 80/292 (27%), Gaps = 31/292 (10%) Query: 81 AISAGRGIGKTTLNAWMMLWL------ISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 I GRG GKT A + P + + + Q+++ + S L+ Sbjct: 61 VIMGGRGAGKTRAGAEWVRMQVEGAGPADAGPAHRVALVGETFDQVRDVMIFGESGILAC 120 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 P E ++ T A Sbjct: 121 SPPDRRPEWEATKRRL------------------VWANGATAQAYSAQEPEALRGPQFDA 162 Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254 + DE + + F + + T R G I N P + Sbjct: 163 AWVDELAKWRRAEETWDMLQFALRLGKHPQQVITTTPRNVGVLKAILNNPST-VVTHAPT 221 Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314 + F + +RY + R E+ G + +E R A Sbjct: 222 EANRAYLAESFLAEVQARYAGT-RLGRQELEGVLLEDVEGALWTTAQLEGL--RLASPPA 278 Query: 315 YAPLIMGCDIA---GEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGCPV 363 +++ D A G G D+ +V + DW A ++++ + G P Sbjct: 279 MDRVVVALDPAVTGGAGSDECGIVVAGAVTRGPVQDWRAFVLEDASVRGRPT 330 >gi|163716617|gb|ABY40529.1| putative TerL [Burkholderia phage Bups phi1] Length = 531 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 48/368 (13%), Positives = 93/368 (25%), Gaps = 49/368 (13%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGI------------KGKP 44 P + + + L + + + + + F WG+ P Sbjct: 12 PDYVQVFEWRAERLQRIRANPGVLPALRAFYRDNPAQFIIDWGMTFDPRNVERGLPATIP 71 Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 F + W + K R +G + L + + Sbjct: 72 FLLFPKQEDW-------IAWFMERWRAREPGITEKT-----RDMGMSWLTVGLADTVCLF 119 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 G++ + E E + W + L L P+ + + Sbjct: 120 HEGVAAGFGSRKE---------EYVDKIGSPKSLFWKAREFLRLLPAEFRGSWDIGTHAP 170 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224 + + +G DE++ T Sbjct: 171 HMRIIFPDTGSVITGESGDGIG-RGDRASFYVVDESAFLERPQLVDASLSATTNCRQD-- 227 Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 S + F + K + R D ++ ++ D V EI Sbjct: 228 --ISTPNGMGNSFAQRRH--SGKIKVFTFHWRDDPRKDDAWYAKQVAEL--DPVVVAQEI 281 Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNII 342 + IP +++ A+ + G D+A EG DK R G ++ Sbjct: 282 DINYAASVEGVVIPSAWVQAALGAHVKLGIEPSGTRRGGLDVADEGKDKNAFAGRYGFLL 341 Query: 343 EHIFDWSA 350 EH+ WS Sbjct: 342 EHLESWSG 349 >gi|205374899|ref|ZP_03227691.1| hypothetical protein Bcoam_17870 [Bacillus coahuilensis m4-4] Length = 500 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 45/384 (11%), Positives = 94/384 (24%), Gaps = 87/384 (22%) Query: 11 LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70 E+EL+E+ A ++ F N +F +G +Q +F+ + H + Sbjct: 6 TEEELNELEKCANDIVYFAN-TYIWFNDKKRGIVQFEAY---PFQADFLLDLCEHQKN-- 59 Query: 71 NNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK 130 + R +G + L + ++ ++ + L Sbjct: 60 ----------IVLKSRQMGLSWTALIWALHRCLFFFDQKGLILSMDKSAADDAL------ 103 Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190 +R L G + + + + + T + Sbjct: 104 ------NRIKVMYDYLPDFLKGDLGDNSKSIIE------FKDMNSMIKSVAMTESAGRSD 151 Query: 191 HGMAVFNDEASG-----TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL 245 DE + P + S+ +I S F+ + Sbjct: 152 TPTFAIWDEMAFPRKGVDPYKVWDSLKPAL---GETGKFIGISTPNGFGNLFHRFWTQGE 208 Query: 246 ED-WKRYQIDTRTVEGI--------------------DSGFHEGII--------SRYGLD 276 E +++ QI + + E + +D Sbjct: 209 ERGFRKTQIHWTSRPDRVGSIELFNELEERRKRRLQPTTEQVERVKAVSHWYEMECKDMD 268 Query: 277 SDVARIEILGQFPQQE-------------VNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323 D E F N N + + + + + I D Sbjct: 269 DDKFSQEYEMNFLNSGRPAFSISKVLKQFDNVLDKFNKLNDHIEQYKKPEAGVEYIAAFD 328 Query: 324 IA-GEGGDKTV--VVFRRGNIIEH 344 + G GGD + R G + Sbjct: 329 TSEGTGGDNNAFGIFTRDGEQVLE 352 >gi|213426918|ref|ZP_03359668.1| putative prophage terminase large subunit [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 374 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 59/171 (34%), Gaps = 5/171 (2%) Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN- 242 ++ +EA + K + + ++I N + + + F Sbjct: 19 EEIKSLEGIDVLWLEEAHALTEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVV 76 Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302 P ED +I+ + + I + D + G + I ++I Sbjct: 77 DPPEDTLIRKINYDENPFLSDTMLKVIDAARRRDPEGFVHVYEGVPESDDDAAIIKLSWI 136 Query: 303 EEAMSREAIDD--LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 E A+ + D +G D+A G DK V+R G++I +W AK Sbjct: 137 EAAVDAHKVLDFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAK 187 >gi|226940459|ref|YP_002795533.1| Terminase large subunit [Laribacter hongkongensis HLHK9] gi|226715386|gb|ACO74524.1| Terminase large subunit [Laribacter hongkongensis HLHK9] Length = 272 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 2/116 (1%) Query: 239 DIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIP 298 W QID+RTVEG + YG +SD ++ + G FP FI Sbjct: 5 KCGRRFRHRWVARQIDSRTVEGTNKEQIAKWAEDYGEESDFFKVRVRGMFPSMSARQFIS 64 Query: 299 HNYIEEAMSREAIDD--LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352 + A R + YAP I+ D A EG D+ V+ R+G + + Sbjct: 65 ETDVSAAYGRALRPEQYQYAPKILTVDPAWEGDDEFVIGLRQGLSFRVLHTMAKND 120 >gi|6467533|gb|AAF13179.1|AF181080_1 putative gene transfer agent large terminase [Rhodobacter capsulatus] Length = 393 Score = 88.5 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 43/292 (14%), Positives = 79/292 (27%), Gaps = 35/292 (11%) Query: 83 SAGRGIGKTTLNAWMMLWL------ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136 GRG GKT A + P + + + Q+++ + S L+ P Sbjct: 1 MGGRGAGKTRAGAEWVRMQVEGAGPADAGPAHRVALVGETFDQVRDVMIFGESGILACSP 60 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 E ++ T A + Sbjct: 61 PDRRPEWEATKRRL------------------VWANGATAQAYSAQEPEALRGPQFDAAW 102 Query: 197 NDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254 DE + + + + + T R G I N P + Sbjct: 103 VDELAKWRRAEETWDMLQFALRLG--KHPQQVITTTPRNVGVLKAILNNPST-VVTHAPT 159 Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314 + F + +RY + R E+ G + +E R A Sbjct: 160 EANRAYLAESFLAEVQARYAGT-RLGRQELEGVLLEDVEGALWTTAQLEGL--RLASPPA 216 Query: 315 YAPLIMGCDIA---GEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGCPV 363 +++ D A G G D+ +V + DW A ++++ + G P Sbjct: 217 MDRVVVALDPAVTGGAGSDECGIVVAGAVTRGPVQDWRAFVLEDASVRGRPT 268 >gi|94497317|ref|ZP_01303888.1| hypothetical protein SKA58_07183 [Sphingomonas sp. SKA58] gi|94423180|gb|EAT08210.1| hypothetical protein SKA58_07183 [Sphingomonas sp. SKA58] Length = 437 Score = 88.5 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 38/276 (13%), Positives = 74/276 (26%), Gaps = 23/276 (8%) Query: 64 VHCHSNVNNSNPTIFKCAIS-AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN 122 + ++ + AGRG GKT A + + P I + S + ++ Sbjct: 37 DFLARPGQRAPAGDWRIWLMMAGRGFGKTRAGAEWVRGIAEADPAARIALVGASLGEARS 96 Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182 + S L++ PH + Sbjct: 97 VMVEGESGLLAIAPHWARPAYAPALRRLT------------------WPNGAVAMLFGAA 138 Query: 183 TFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242 G + DE + ++ + T R + Sbjct: 139 DPEGLRGPQFSHGWADEIAKWASGEAAWHNLMMGMRLGRDPRVLVTTTPRPVPLVRSLVA 198 Query: 243 IPLEDWKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301 +D + T E + GF + + YG + R E+ G+ ++ Sbjct: 199 RDGDDVVVTRGRTADNEANLAPGFVAAMTAGYGGT-RLGRQELDGELIEEVEGALWTRAL 257 Query: 302 IEEAMSREAIDDLYAPLIMGCD-IAGEGGDKTVVVF 336 IE+ + +++ D A GGD +V Sbjct: 258 IEQCRVVHV-PGVLTRVVVAVDPPASVGGDACGIVV 292 >gi|326633035|ref|YP_004306624.1| terminase large subunit [Enterobacteria phage SPC35] gi|321272229|gb|ADW80121.1| terminase large subunit [Enterobacteria phage SPC35] Length = 438 Score = 88.5 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 80/278 (28%), Gaps = 41/278 (14%) Query: 69 NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128 N F A + R +GK+ + A+ + +L P + ++ +A + + L N W+++ Sbjct: 47 NALEDPRHRFVTACVS-RRVGKSFI-AYTLGFLKLLEPNVKVLVVAPNYS-LANIGWSQI 103 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188 + + E + + + + Sbjct: 104 RGLIKKYGLQTERENAKDK-------------EIELANGSLFKLASAAQADSAV------ 144 Query: 189 NTHGMAVFNDEASGTP---DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL 245 + DEA+ + D + + N +T R WF + + Sbjct: 145 GRSYDFIIFDEAAISDVGGDAFRVQLRPTLDKPNSKAL---FISTPRGGNWFKEFYAYGF 201 Query: 246 ED----WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301 +D W R D E + R E F E F N Sbjct: 202 DDTLPNWVSIHGTYRDNPRADLNDIEEARRTVSK--NYFRQEYEADFSVFEGQIFDTFNA 259 Query: 302 IE-----EAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334 I+ + M DD ++G D+ D T V Sbjct: 260 IDHVKDLKGMRHFFKDDEAFETLLGIDVGY--RDPTAV 295 >gi|289581321|ref|YP_003479787.1| hypothetical protein Nmag_1649 [Natrialba magadii ATCC 43099] gi|289530874|gb|ADD05225.1| hypothetical protein Nmag_1649 [Natrialba magadii ATCC 43099] Length = 602 Score = 88.5 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 41/374 (10%), Positives = 92/374 (24%), Gaps = 93/374 (24%) Query: 38 WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97 W Q + + + + + G+GK+ + A + Sbjct: 27 WLEDAIEDYLGITVTGAQAQICRGIAANE------------RLLVVTANGLGKSYILAAI 74 Query: 98 MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 + ++ R + +E ++K T V + P + + Sbjct: 75 TIVWLTVRYPACSFATSGTERKMKRTYCKPVENLHG----------DARVPLPGEYKSRP 124 Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG--TPDIINKSILGFF 215 + + +H+ S + G H + +EA + ++ Sbjct: 125 ERIEIDGEPEHFFEAA---SPQDAGELEGVHAAY-TLAIIEEADKKDVDAEVLDAMKSLV 180 Query: 216 TELNPNRFWIMTSNTRRLNG----WFYDIFNIPLEDWKRYQIDTRTVEGIDSGF------ 265 T+ I +N + D + P W+ + + + Sbjct: 181 TDEQDRI--IAIANPPKDETNSIYPILDEQDDPTSKWEVLEFSSFDSHNVQVELGNVDDE 238 Query: 266 ----------HEGIISRYGLDSD------------------------------------- 278 + Y + Sbjct: 239 KVDGLASLHKIQDDWEDYNKEPWPGAETARTLSAPKLDADGNPVFSHSDALEDNPEFRTD 298 Query: 279 ---VARIEILGQFPQQ--EVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTV 333 G P N + + A R+ P G D+A +GGD+T Sbjct: 299 LDQRWYRRRAGIIPPGGASKNRPFTIDDVNAAWGRDWQPV-GRPQATGIDVARDGGDRTP 357 Query: 334 VVFRRGNIIEHIFD 347 V+ G+++E ++ Sbjct: 358 VISVDGDVLEVRYE 371 >gi|46401884|ref|YP_006983.1| terminase, large subunit [Enterobacteria phage T5] gi|45775062|gb|AAS77194.1| terminase, large subunit [Enterobacteria phage T5] gi|59897286|gb|AAX12081.1| ORF144 [Enterobacteria phage T5] Length = 438 Score = 88.5 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 80/278 (28%), Gaps = 41/278 (14%) Query: 69 NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128 N F A + R +GK+ + A+ + +L P + ++ +A + + L N W+++ Sbjct: 47 NALEDPRHRFVTACVS-RRVGKSFI-AYTLGFLKLLEPNVKVLVVAPNYS-LANIGWSQI 103 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188 + + E + + + + Sbjct: 104 RGLIKKYGLQTERENAKDK-------------EIELANGSLFKLASAAQADSAV------ 144 Query: 189 NTHGMAVFNDEASGTP---DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL 245 + DEA+ + D + + N +T R WF + + Sbjct: 145 GRSYDFIIFDEAAISDVGGDAFRVQLRPTLDKPNSKAL---FISTPRGGNWFKEFYAYGF 201 Query: 246 ED----WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301 +D W R D E + R E F E F N Sbjct: 202 DDTLPNWVSIHGTYRDNPRADLNDIEEARRTVSK--NYFRQEYEADFSVFEGQIFDTFNA 259 Query: 302 IE-----EAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334 I+ + M DD ++G D+ D T V Sbjct: 260 IDHVKDLKGMRHFFKDDEAFETLLGIDVGY--RDPTAV 295 >gi|319789040|ref|YP_004150673.1| protein of unknown function DUF264 [Thermovibrio ammonificans HB-1] gi|317113542|gb|ADU96032.1| protein of unknown function DUF264 [Thermovibrio ammonificans HB-1] Length = 419 Score = 88.1 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 52/319 (16%), Positives = 109/319 (34%), Gaps = 51/319 (15%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 +Q+E ++ +D H S I R GK+ + ++ +T+P +I+ Sbjct: 6 PYQIEIVKGIDSHKFS------------VIKMARQTGKSFVVSYWATRRATTKPNHAIVV 53 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWY--AELLEQSMGIDSKHYT 170 ++ +E Q K + + ++++ L ++ EL + + + Sbjct: 54 VSPTERQSK------------LFVDKVKLHIKAMRLTGVKFFEDTELKKLEVNFPNGSQI 101 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTS 228 I P G G V DE + + +++ T + + S Sbjct: 102 IA-------LPANPDGIRGFSGD-VIMDEVAFFKNWQEVYRAVFPIIT-RKKDYKLVAIS 152 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYG--LDSDVARIEILG 286 N FY +++I + K ++ E + G + + D R E L Sbjct: 153 TPFGKNDLFYYLWSISENNPKWFRYSLNIFEAVAKGLKVDVEELRAGIKNEDAWRTEYLV 212 Query: 287 QFPQQEVNNFIPHNYIEEAMSREAID------DLYAPLIMGCDIAGEGGDKTVVVFR--- 337 +F + + +P+ I++ + +L L G D+ D TV+ Sbjct: 213 EFIDEA-DAVLPYELIQKCEMPKEELLVEDIKELKGELYCGVDVGRR-KDLTVITLLEKL 270 Query: 338 -RGNIIEHIFDWSAKLIQE 355 + I + S K +E Sbjct: 271 GDVLYVRRIEELSKKPFRE 289 >gi|167725769|ref|ZP_02409005.1| hypothetical protein BpseD_42528 [Burkholderia pseudomallei DM98] Length = 517 Score = 88.1 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 73/267 (27%), Gaps = 20/267 (7%) Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 R +G + L + + G++ + E E + W + Sbjct: 87 RDMGMSWLTVGLADTVCLFHEGVAAGFGSRKE---------EYVDKIGSPKSLFWKAREF 137 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 L L P+ + + + + +G DE++ Sbjct: 138 LRLLPAEFRGSWDIGTHAPHMRIIFPDTGSVITGESGDGIG-RGDRASFYVVDESAFLER 196 Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265 T S + F + K + R D + Sbjct: 197 PQLVDASLSATTNCRQD----ISTPNGMGNSFAQRRH--SGKIKVFTFHWRDDPRKDDAW 250 Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCD 323 + ++ D V EI + IP +++ A+ + G D Sbjct: 251 YAKQVAEL--DPVVVAQEIDINYAASVEGVVIPSAWVQAALGAHVKLGIEPSGTRRGGLD 308 Query: 324 IAGEGGDKTVVVFRRGNIIEHIFDWSA 350 +A EG DK R G ++EH+ WS Sbjct: 309 VADEGKDKNAFAGRYGFLLEHLESWSG 335 >gi|238027169|ref|YP_002911400.1| hypothetical protein bglu_1g15550 [Burkholderia glumae BGR1] gi|237876363|gb|ACR28696.1| Hypothetical protein bglu_1g15550 [Burkholderia glumae BGR1] Length = 531 Score = 88.1 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 48/368 (13%), Positives = 92/368 (25%), Gaps = 49/368 (13%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGI------------KGKP 44 P + + + L + + + + + F WG+ P Sbjct: 12 PDYVQVFEWRAERLQRIRANPGVLPALRAFYRDNPAQFIIDWGMTFDPRNVERGLPATIP 71 Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 F + W + K R +G + L + + Sbjct: 72 FLLFPKQEDW-------IAWFMERWRAREPGITEKT-----RDMGMSWLTVGLADTICLF 119 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 G++ + E E + W + L L P+ + + Sbjct: 120 HEGVAAGFGSRKE---------EYVDKIGSPKSLFWKAREFLRLLPAEFRGSWDIGTHAP 170 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224 + + +G DE++ T Sbjct: 171 HMRIIFPDTGSVITGESGDGIG-RGDRASFYVVDESAFLERPQLVDASLSATTNCRQD-- 227 Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 S + F + K + R D ++ ++ D V EI Sbjct: 228 --ISTPNGMGNSFAQRRH--SGKIKVFTFHWRDDPRKDDAWYAKQVAEL--DPVVVAQEI 281 Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNII 342 + IP +++ A+ G D+A EG DK R G ++ Sbjct: 282 DINYAASVEGVVIPSAWVQAALGAHVKLGISPSGARRGGLDVADEGKDKNAFAGRYGFLL 341 Query: 343 EHIFDWSA 350 EH+ WS Sbjct: 342 EHLESWSG 349 >gi|18640524|ref|NP_570365.1| DNA packaging protein B [Synechococcus phage P60] gi|18478754|gb|AAL73303.1| DNA packaging protein B [Synechococcus phage P60] Length = 258 Score = 88.1 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 43/271 (15%), Positives = 70/271 (25%), Gaps = 44/271 (16%) Query: 20 MHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFK 79 + + F+ F+ W P +P R QL + + + Sbjct: 6 LETQIKEDFRVFLTLV--WRELDLP-----KPTRAQL----HIADYLQHGPK-------R 47 Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 ISA RG+GK+ + A +LW++ P I+ I+ S+ + N L + H Sbjct: 48 LQISAFRGVGKSWITAAFVLWVLFNDPDKKIMVISASKERADNFSIFCQKLILDISWLNH 107 Query: 140 WFEMQSLSLHPSGWYAE-LLEQSMGIDSKHYTITCRTY----------SEERPDTFVGPH 188 S + + K IT + E P Sbjct: 108 LGPKDSDQRWSRISFDVGPAKPHQAPSVKSVGITGQMTGSRAHLMIFDDVEVPANSATDM 167 Query: 189 NTHGMAVFNDEASGT--------------PDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 + EA P W T+ + L Sbjct: 168 QREKLLQLVTEAESILTPDDDSRILFLGTPQSTFTIYRKLAERSYRPFVWPCTAYPKDLI 227 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265 P K + + R DS F Sbjct: 228 RLM-RALPSPQHWLKTSRKEWRKDPPTDSRF 257 >gi|304360860|ref|YP_003856980.1| gp8 [Mycobacterium phage CrimD] gi|302858609|gb|ADL71354.1| gp8 [Mycobacterium phage CrimD] Length = 473 Score = 87.7 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 43/351 (12%), Positives = 86/351 (24%), Gaps = 68/351 (19%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +WQ + + V + +F +I R GKT ++ L PG ++I Sbjct: 43 DQWQDDLGKLVCA--KRSDGLYAADMFAMSI--PRQTGKTYFLGAIVFALCKMTPGTTVI 98 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A+ T + Q+L+ L + Sbjct: 99 WTAHRTRTAAETFKSM----------------QALAKREQIAPHILNVHTGNGKEAVLFT 142 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 + G + DEA + ++ T +PN + Sbjct: 143 NGSRILFGAREKGFGRGFAKVDVLIFDEAQILSENAMDDMVPA-TNASPNGLILFAGTPP 201 Query: 232 RLNGW------------------------FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267 + D + P E+ +++ + Sbjct: 202 KPTDPGEVFTNLRLDAINGESDDVAYVEISADENDDPDEESTWRKMNPSYPHRTSARAIR 261 Query: 268 GIISRYGLDSDVARIEILGQFPQ-QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAG 326 + DS R E +G + + I + + + P +G D++ Sbjct: 262 RMRKALSWDS--FRREAMGIWDKISVHAQVIKPSLWRDLADPLGPEPGAKPASLGVDMSH 319 Query: 327 EGGDKTVV-----VFRRGN--IIEHIFDWSAKLIQ-------ETNQEGCPV 363 G + +E + W+ E PV Sbjct: 320 GG----AISIGGCWLIDDELRHVEQV--WAGTDTAAAVEFIVERAGRRIPV 364 >gi|291334530|gb|ADD94183.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C1201] gi|291334650|gb|ADD94297.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C695] Length = 223 Score = 87.7 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 28/242 (11%), Positives = 63/242 (26%), Gaps = 33/242 (13%) Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161 + IA + Q K+ W + ++ +P + E Sbjct: 1 MCPHKNPRFAYIAPTFKQAKSIAWDYMKQFTDKIP-----------------STKFNETE 43 Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNP 220 + +D + + G + DE + + + I + + Sbjct: 44 LRVD----LPNGARITLLGAENSDGLRGIYLDGCVIDEYANIDGKLFAEIIRPALS--DR 97 Query: 221 NRFWIMTSNTRRLNGWFYDIFNIP--LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278 + + +N FYD++ EDW Y+ + +D + G Sbjct: 98 KGYCVFIGTPAGMNNNFYDLYQHANGAEDWFNYKAKASETKIVDQEELDKAKEVMGEKK- 156 Query: 279 VARIEILGQFPQQEVNNFIPHN---YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335 E + ++ D P+ D+ D + ++ Sbjct: 157 -YLQEFECDWIANIEGAIYGEEIAKLDDKKQLARVPYDPTLPVSTAWDLGV--ADHSSII 213 Query: 336 FR 337 F Sbjct: 214 FF 215 >gi|260433583|ref|ZP_05787554.1| putative phage terminase, large subunit [Silicibacter lacuscaerulensis ITI-1157] gi|260417411|gb|EEX10670.1| putative phage terminase, large subunit [Silicibacter lacuscaerulensis ITI-1157] Length = 504 Score = 87.7 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 41/336 (12%), Positives = 98/336 (29%), Gaps = 46/336 (13%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMML---WLISTRPGMSIICIANS 116 + + + ++ + + + GRG GK+TL+A + L + I IA Sbjct: 27 KLAPYQNKFIDGAYGPGINVGVLSVGRGNGKSTLSAILALGELVGAWSDAKEREILIAAK 86 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 Q W V LP + E ++ + + + Sbjct: 87 TQQQAQICWHYVVSLSKTLPEDVQAAITIRRQ-------PRFEIQFDDENGPHILRAISA 139 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTRR 232 + T DE P D + ++L ++ + I TS + Sbjct: 140 DGKSAL------GTSPTLAILDERGHWPLAQGDELEAALLTGLSKRDGKALIISTSASND 193 Query: 233 LNGWFYDIFNIPLEDWKRYQIDTR--------------------TVEGIDSGFHEGIISR 272 ++ + + +++ + + ++ Sbjct: 194 MHPFSLWLDREAPGVYRQEHRPEPGLPADDVASLIIANPGTKYGIGPSLKRLKDDAALAI 253 Query: 273 YGLDSDVARIEILGQFPQQEVNN---FIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329 S ++R +L + + + +N I + + +A+ P ++G D+ G Sbjct: 254 ERGGSALSRFRLLSRNERVQEDNRDILISLDDWLKC-ETDALPPKSGPCVIGLDLGGSAS 312 Query: 330 DKTVVVFR-RGNIIEHIFDWSAKLIQETNQEGCPVG 364 + +E + +K + + VG Sbjct: 313 MSAAAYYWPETGRLECFGTFPSKPDLDARGQSDAVG 348 >gi|182682964|ref|YP_001837088.1| terminase, large subunit [Enterobacteria phage EPS7] gi|182630676|gb|ACB97608.1| terminase, large subunit [Enterobacteria phage EPS7] Length = 438 Score = 87.3 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 44/308 (14%), Positives = 86/308 (27%), Gaps = 49/308 (15%) Query: 69 NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128 N F A + R +GK+ + A+ + +L P + ++ +A + + L N W+++ Sbjct: 47 NALEDPRHRFVTACVS-RRVGKSFI-AYTLGFLKLLEPNVKVLVVAPNYS-LANIGWSQI 103 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188 + + E + + + + Sbjct: 104 RGLIKKYGLQTERENAKDK-------------EIELANGSLFKLASAAQADSAV------ 144 Query: 189 NTHGMAVFNDEASGTPD----IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244 + DEA+ D + + + N +T R WF + + Sbjct: 145 GRSYDFIIFDEAA-ISDVGGAAFDIQLRPTLDKPNSKAL---FISTPRGGNWFKEFYEKG 200 Query: 245 LED----WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 + W R D E + R E F E F N Sbjct: 201 FNETLPNWVSIHGTYRDNPRADLNDIEEARRTVSK--NYFRQEYEADFSVFEGQIFDTFN 258 Query: 301 YIE-----EAMSREAIDDLYAPLIMGCDIAGEGGDKTVV----VFRRGNIIEHIFDWSA- 350 IE + M DD ++G D+ D T V ++ + ++ Sbjct: 259 AIEHVKDLKGMRHFFKDDEAFETLLGIDVGY--RDPTAVLTIKYHYDTDVYYVLEEYQQA 316 Query: 351 -KLIQETN 357 K + Sbjct: 317 EKTTAQHA 324 >gi|159897910|ref|YP_001544157.1| hypothetical protein Haur_1384 [Herpetosiphon aurantiacus ATCC 23779] gi|159890949|gb|ABX04029.1| hypothetical protein Haur_1384 [Herpetosiphon aurantiacus ATCC 23779] Length = 477 Score = 87.3 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 47/366 (12%), Positives = 88/366 (24%), Gaps = 70/366 (19%) Query: 22 AECVLSFKNFVMRF--FPWGIKGKPLEHFSQPHRW--QLEFMEAVDVHCHSNVNNSNPTI 77 A+C F F W Q++ + + + Sbjct: 8 AKCHADPAYFTHHFGLIDDAQGLGDGSGAMPFTLWPAQVQVLWTLLIQ------------ 55 Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 I R +G + L LWL +PG ++ + + + L V + LP Sbjct: 56 RLVLILKARQLGISWLCCAYALWLCLFQPGKVVLIFSKGQGEADEMLQR-VKRLYERLPE 114 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 S + + + P T + V Sbjct: 115 WMREA--------SPALVTDNTTELEWANGSRVKS-------LPATKGAGRSFTASLVIL 159 Query: 198 DEASG--TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NIPLEDWKRYQ 252 DEA+ + ++ I+ S + F+ ++ + Sbjct: 160 DEAAFLLWATQLYTALKPTIDGGGQ---LIVLSTANGIGNLFHQLWLKAISAKNRFTTIF 216 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEI---------------------LGQFPQQ 291 + D+ ++ + Y D D+ R E L Q P Sbjct: 217 LPWWARPTRDAAWYHNQLEEY-TDPDMVRQEYPSTAQEAFLVSGRTRFKMPWLLKQNPSD 275 Query: 292 E---VNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEG---GDKTVVVFRRGNIIEHI 345 + ++ I+ D+A EG GD E + Sbjct: 276 GLALDELPASLSLLDGVTVYHL-PQQGRRYILAADVA-EGLEHGDFCAATLIDAVSWEEM 333 Query: 346 FDWSAK 351 K Sbjct: 334 ASVHGK 339 >gi|152990214|ref|YP_001355936.1| phage terminase, large subunit [Nitratiruptor sp. SB155-2] gi|151422075|dbj|BAF69579.1| phage terminase, large subunit [Nitratiruptor sp. SB155-2] Length = 398 Score = 87.3 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 33/255 (12%), Positives = 73/255 (28%), Gaps = 29/255 (11%) Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 P +K GRG K+ A +L L S +P + I+C + + +++ +S + Sbjct: 18 PYRYKV-YYGGRGSAKSYNFALTLLVLASKQP-LRILCAREFQNSISDSVHRLLSDLIDK 75 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 H FE+ + +E + + + + + T Sbjct: 76 Y-HLPNFEVTQREIRNKLTGSEFIFKGLRHNIQSIKST-----------------EGVDI 117 Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQI 253 + +EA + + ++ + W+ N + Y F P + ++ Sbjct: 118 CWVEEAQTVSEESWQILIPTIRKPGSE-IWVSF-NPYFVEDPTYQRFVVNPPSNAFVKKV 175 Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF----IPHNYIEEAMSRE 309 + E + D + G+ + I+ S+E Sbjct: 176 TYKDNPYFPDVLREEMEYDKKTDYERYMHVWEGECITYSDAQVFRDKFAIDTIDVGNSKE 235 Query: 310 AIDDLYAPLIMGCDI 324 D Sbjct: 236 VYYGADWGF--AVDP 248 >gi|289829424|ref|ZP_06547036.1| putative prophage terminase large subunit [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 346 Score = 86.9 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 59/161 (36%), Gaps = 5/161 (3%) Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252 ++ +EA + K + + ++I N + + + F P ED + Sbjct: 1 MLWLEEAHALTEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEDTLIRK 58 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 I+ + + I + D + G + I ++IE A+ + Sbjct: 59 INYDENPFLSDTMLKVIDAARRRDPEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAHKVL 118 Query: 313 D--LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 D +G D+A G DK V+R G++I +W AK Sbjct: 119 DFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAK 159 >gi|119385627|ref|YP_916682.1| hypothetical protein Pden_2902 [Paracoccus denitrificans PD1222] gi|119376222|gb|ABL70986.1| protein of unknown function DUF264 [Paracoccus denitrificans PD1222] Length = 463 Score = 86.9 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 35/294 (11%), Positives = 78/294 (26%), Gaps = 35/294 (11%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134 I GRG GKT A + + + ++ + Q ++ + S L+ Sbjct: 71 VIMGGRGAGKTRAGAEWVRAQVEGATPEAPGRARRVALVSETLDQARDVMVFGESGILAS 130 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 P ++ A Sbjct: 131 SPPDRRPVWEAGRRRL------------------VWPNGAVAQLYSAHEPEALRGPQFDA 172 Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252 + DE + + + + ++T+ + + + Sbjct: 173 AWVDELAKWKKAEECWDMLQFALRLGEHPQ-QVVTTTPKNVA--VLKRLLRQSSTVTTHA 229 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + F + +RYG + R E+ G + +E R Sbjct: 230 PTDANRAYLAESFLAEVQARYGGT-RLGRQELEGLLLEDVEGALWSAGLLERC--RVEAA 286 Query: 313 DLYAPLIMGCDIAGEGG---DKTVVVFRRGNIIEHIFDWSAKLIQETNQEGCPV 363 + +++ D A GG D+ +V + W A ++++ + G P+ Sbjct: 287 PALSRIVVAVDPAVTGGAAADECGIVVAGVVSEGPVTQWRAYVLEDASVRGGPL 340 >gi|221316961|ref|YP_002533105.1| putative terminase large subunit - phage associated [Bacillus cereus Q1] gi|221243293|gb|ACM16001.1| putative terminase large subunit - phage associated [Bacillus cereus Q1] Length = 425 Score = 86.9 bits (213), Expect = 5e-15, Method: Composition-based stats. Identities = 36/268 (13%), Positives = 76/268 (28%), Gaps = 25/268 (9%) Query: 72 NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131 +I K GRG GK+T + ++ + P ++++CI + ++ + + ++ + Sbjct: 21 RKCESILKIVCKGGRGSGKSTDISICIVMDLIQFP-ITVLCIRKVKDTIRESCYEQIKEA 79 Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191 + +L H F + + + + I R + + Sbjct: 80 IEILGVEHLFRFKESPM------------EIIYKPRGNKIIFRGADDPAKIKSIKIAKYP 127 Query: 192 GMAVFNDE-ASGTPDIINKSILGFFTE----LNPNRFWIMTSNTR-RLNGWFYDIFNIPL 245 + +E A + +I + N R W F Sbjct: 128 VAIAWFEELAEFKLEEDVSTIEKSILRKELPNGLRYKMYYSYNPPKRKQSWVNKKFETQF 187 Query: 246 EDWKRY--QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303 + + I F E L E G+ P +P + + Sbjct: 188 KPKNTFVHHSTYHDNPHISKQFVEEAEETKRLKPQQYEHEYEGK-PTGSG--VVPFSNLT 244 Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDK 331 + + + G D G G D Sbjct: 245 FRRITDEEIKTFDNIRQGID-WGYGNDA 271 >gi|72384687|gb|AAZ67635.1| phage terminase large subunit-like protein [Haemophilus parasuis 29755] Length = 405 Score = 86.5 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 38/275 (13%), Positives = 71/275 (25%), Gaps = 38/275 (13%) Query: 84 AGRGIGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 GRG KT A M + R I+C L+++ E+ + + Sbjct: 27 GGRGSAKTRTFAKMTAVVAYQRAMQGESGVILCGREFMNSLEDSSLEEIKQAIQ------ 80 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 W + E ++ R + + + DE Sbjct: 81 ----------SEPWLTDFFEVGEKYVRTKCGRISYIFTGLRHNLDSIKSKARILLAWIDE 130 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY-QIDTRTV 258 A ++ + +L E W+ N + F ++ +++ Sbjct: 131 AESVSEMAWRKLLPTVRENGSE-IWLTW-NPEKKGSATDLRFRQHQDESMAIVEMNYSDN 188 Query: 259 EGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317 + + D R G + ++ Y E + + + D P Sbjct: 189 PWFPDVLEQERLRDKARLDDATYRWIWEGDYLEESEAQVFRGKYQE--LEFKPLPDFEGP 246 Query: 318 LIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352 G D G D T I W K Sbjct: 247 YH-GLDF-GFAQDPTAA----------IKCWVFKD 269 >gi|154247076|ref|YP_001418034.1| hypothetical protein Xaut_3147 [Xanthobacter autotrophicus Py2] gi|154161161|gb|ABS68377.1| protein of unknown function DUF264 [Xanthobacter autotrophicus Py2] Length = 416 Score = 86.5 bits (212), Expect = 6e-15, Method: Composition-based stats. Identities = 35/264 (13%), Positives = 67/264 (25%), Gaps = 35/264 (13%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSML 135 + GRG GKT A + L RP I +A + ++ + VS L++ Sbjct: 31 VLGGRGAGKTRAGAEWVRGLALGRPPFAGRPVGRIALVAETMADVREVMVEGVSGLLAVH 90 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 P + + A Sbjct: 91 PRAERPRWEPTRRRLE------------------WANGAVAQGFSAEDPESLRGPQFAAA 132 Query: 196 FNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253 + DE + + + R + T R + P + Sbjct: 133 WLDELAKWKRAEATFDMLQFGLRLGAQPRQMVT--TTPRPTALLRRLLADPS--TAVTRA 188 Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 T + G + + + R E+ G+ + + +E REA Sbjct: 189 RTADNAFHLAPSFLGQVLTRYGGTRLGRQELDGELIEDRADALFSRPALEAL--REAQVP 246 Query: 314 LYAPLIMGCDI---AGEGGDKTVV 334 +++ D + G D + Sbjct: 247 PLTRIVVAVDPPASSRAGADACGI 270 >gi|330810733|ref|YP_004355195.1| phage terminase protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378841|gb|AEA70191.1| Putative phage terminase protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 439 Score = 86.5 bits (212), Expect = 6e-15, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 70/293 (23%), Gaps = 47/293 (16%) Query: 77 IFKCAISAGRGIGKTTL-------NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129 F+ A+ GR GKT L A + + I A ++ Q + W + Sbjct: 31 RFRDAVC-GRRFGKTFLGKAEMRRAAKLAAAWNVSVEDE-IWYAAPTQKQARRVFWRRLK 88 Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189 + + + E M I K + + Sbjct: 89 QAIPKSWL----------------VTKPNETDMLITLKS----GHLLRCVGLENYDDLRG 128 Query: 190 THGMAVFNDEASGTPDIIN-KSILGFFT--------ELNPNRFWIMTSNTRRLNGWFYDI 240 + + DE + + I + + T + YD Sbjct: 129 SGLFFILVDEWADCKYAAWEEVIRPMLSTCTYTLPNGEVRKGGHALRIGTPKGFNHCYDT 188 Query: 241 FNIPLEDWKRYQIDT----RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 F + + E + D R E F + + Sbjct: 189 FQDGKPGHEPDHRSWLYTSLDGGNVPPEEIEAARRKM--DPRTFRQEYEASFENYQGVVY 246 Query: 297 IPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS 349 N EA L +G D VV R ++ + ++S Sbjct: 247 YTFN--REANRTSETIKRGEALHIGMDFNVM-KMAAVVHVIRDDLPLALSEFS 296 >gi|51512091|gb|AAU05290.1| terminase large subunit [Enterobacteria phage T5] Length = 438 Score = 86.5 bits (212), Expect = 6e-15, Method: Composition-based stats. Identities = 42/278 (15%), Positives = 79/278 (28%), Gaps = 41/278 (14%) Query: 69 NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128 N F A + R +GK+ + A+ + +L P + ++ +A + + L N W+++ Sbjct: 47 NALEDPRHRFVTACVS-RRVGKSFI-AYTLGFLKLLEPNVKVLVVAPNYS-LANIGWSQI 103 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188 + + E + + + + Sbjct: 104 RGLIKKYGLQTERENAKDK-------------EIELANGSLFKLASAAQADSAV------ 144 Query: 189 NTHGMAVFNDEASGTP---DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL 245 + DEA+ + D + + N +T R WF + + Sbjct: 145 GRSYDFIIFDEAAISDVGGDAFRVQLRPTLDKPNSKAL---FISTPRGGNWFKEFYAYGF 201 Query: 246 ED----WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301 +D W R D E + R E F E F N Sbjct: 202 DDTLPNWVSIHGTYRDNPRADLNDIEEARRTVSK--NYFRQEYEADFSVFEGQIFDTFNA 259 Query: 302 IE-----EAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334 + + M DD ++G D+ D T V Sbjct: 260 TDHVKDLKGMRHFFKDDEAFETLLGIDVGY--RDPTAV 295 >gi|332185581|ref|ZP_08387329.1| terminase-like family protein [Sphingomonas sp. S17] gi|332014559|gb|EGI56616.1| terminase-like family protein [Sphingomonas sp. S17] Length = 436 Score = 86.5 bits (212), Expect = 6e-15, Method: Composition-based stats. Identities = 40/280 (14%), Positives = 80/280 (28%), Gaps = 25/280 (8%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 E +E ++ H I AGRG GKT A + L PG I + Sbjct: 34 RELVERWELWAHDGQVAPPGDWRVWLIRAGRGFGKTRAGAEWVSALARDNPGARIALMGA 93 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 + ++ + S L++ + +G + + + Sbjct: 94 TLRDVERVMVRGESGLLAVARKGEAPKW------------------IGSLGQVHFTSGAI 135 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 A + DE T ++ + T R Sbjct: 136 GFAYSAAAPEALRGPQHHAAWCDELGKWKGEA-GWDNLMMTLRLGEHPRVLVTTTPRATP 194 Query: 236 WFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN 295 + +P + + + + F + ++S+YG D+ + R E+ G+ Sbjct: 195 LMRKVMALP-DCVETIGRTS-DNAHLPDSFQDAMLSQYG-DTRLGRQELDGEMVDDREGA 251 Query: 296 FIPHNYIEEAMSREAIDDLYAPLIMGCD-IAGEGGDKTVV 334 ++ R +++G D A GD + Sbjct: 252 LWTRALLDR--QRVKTVPALDRVVVGVDPPATSSGDACGI 289 >gi|260433350|ref|ZP_05787321.1| phage DNA Packaging Protein [Silicibacter lacuscaerulensis ITI-1157] gi|260417178|gb|EEX10437.1| phage DNA Packaging Protein [Silicibacter lacuscaerulensis ITI-1157] Length = 427 Score = 86.5 bits (212), Expect = 7e-15, Method: Composition-based stats. Identities = 40/296 (13%), Positives = 78/296 (26%), Gaps = 36/296 (12%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134 I GRG GKT A + ++ + + + Q+++ + S + Sbjct: 34 VIMGGRGAGKTRAGAEWVRSMVEGAKPFDEGEARRVALVGETFDQVRDVMIFGDSGIMQC 93 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 P + ++ G A Sbjct: 94 SPPDRRPQWKASERKL------------------VWPNGAEAQAFSAHDPEGLRGPQFDA 135 Query: 195 VFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252 + DE + + R + T R D+ P + Sbjct: 136 AWVDELAKWKKAGETWDMLQFALRLGERPRVCVT--TTPRNVKVLKDLLAAPST-VMTHA 192 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + F + + +RY + R E+ G + ++ A R Sbjct: 193 PTEANRANLAESFLQEVRARYAGT-RLGRQELDGVLLADAEGALWTGSMLDGA--RVGAV 249 Query: 313 DLYAPLIMGCDIA---GEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC-PVG 364 +++ D A G G D +V + DW A ++ + +G P G Sbjct: 250 PELDRVVVALDPAVTGGSGADACGIVVVGAQLQGPPEDWRAYVLADRTVQGVGPAG 305 >gi|121602586|ref|YP_988560.1| PBSX family phage terminase large subunit [Bartonella bacilliformis KC583] gi|120614763|gb|ABM45364.1| putative phage terminase, large subunit, PBSX family [Bartonella bacilliformis KC583] Length = 402 Score = 86.2 bits (211), Expect = 8e-15, Method: Composition-based stats. Identities = 32/261 (12%), Positives = 69/261 (26%), Gaps = 30/261 (11%) Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I+C + L + E+ + + P +Y + D + Sbjct: 18 ILCARQFQNSLNESSLEEIKRAIEAYP------------FLRDYYDVGDKYVKSKDGRIL 65 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP---NRFWIM 226 +G + + DEA + ++++ E + W+ Sbjct: 66 YTFAGLDRNISSIKSMG----RILLCWVDEAEPVTETAWQTLIPTLREEGQDWHSELWVT 121 Query: 227 TSNTRRLNGWFYDIFNIPLE-DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285 N R N F + + + K +I+ R + ++ + Sbjct: 122 W-NPLRENAPVEKRFRLTKDPNIKGVEINWRDNPQFPDKLNRDRLADLHQRPEQYGHIWE 180 Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI---MGCDIAGEG--GDKTVVVFRRGN 340 G + Q + ++ PLI + DI G G D T + + Sbjct: 181 GDYLQAVQGAYYQKLLLDAEQEGRIAHVSRDPLIQIKIFWDIGGTGAKADATALWVAQ-- 238 Query: 341 IIEHIFDWSAKLIQETNQEGC 361 + E + Sbjct: 239 --FIGREIRILDYYEAQGQPL 257 >gi|46143644|ref|ZP_00204538.1| COG1783: Phage terminase large subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 407 Score = 85.8 bits (210), Expect = 9e-15, Method: Composition-based stats. Identities = 41/273 (15%), Positives = 73/273 (26%), Gaps = 32/273 (11%) Query: 77 IFKCAISAGRGIGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAEVSKWL 132 ++CA GRG KT A M R I+C L+ + EV + + Sbjct: 21 RYRCAY-GGRGSAKTRTFALMTAVWALRRDQAGDSGVILCAREYMNSLEESSLEEVKQAI 79 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 + W ++ R + Sbjct: 80 R----------------STSWLEPHFVIGEKFIKTKSGRISYVFAGLRHNLDSIKSKARI 123 Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL-EDWKRY 251 + + +EA ++ + + E N W+ N + F + E+ K Sbjct: 124 LLAWVEEAETVSEVAWQKLEPTVREHNSE-IWVTW-NPEKRGSATDLRFRQHVPENAKII 181 Query: 252 QIDTRTVEGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310 +++ + ++ D R G + +Q Y E + E Sbjct: 182 EMNYSDNPWFPKELEQTRLADKARLDDATYRWIWEGAYLEQSEAQIFRDKYQE--LEFEP 239 Query: 311 IDDLYAPLIMGCDIAGEGGDKTVV---VFRRGN 340 D P G D G D T G+ Sbjct: 240 NPDFDGPYH-GLDF-GFANDPTAAIKCWVFDGD 270 >gi|86750583|ref|YP_487079.1| hypothetical protein RPB_3472 [Rhodopseudomonas palustris HaA2] gi|86573611|gb|ABD08168.1| Protein of unknown function DUF264 [Rhodopseudomonas palustris HaA2] Length = 431 Score = 85.8 bits (210), Expect = 9e-15, Method: Composition-based stats. Identities = 44/292 (15%), Positives = 73/292 (25%), Gaps = 36/292 (12%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAIS-AGRGIGKTTLNAWMMLWLIS------TRPG 107 Q +F H +N + + GRG GKT A + L RP Sbjct: 18 QHDFATFAHPHQEHGEAGNNGGPWTTWLLLGGRGAGKTRTGAEWVRALAHGTPPYAERPH 77 Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 I I S + + S L P E + Sbjct: 78 RRIALIGESWQDAREVMVEGESGLLRCSPRAERPEWIASRRRLE---------------- 121 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWI 225 D A + DE + + ++ R + Sbjct: 122 --WRNGAVGQVFSADDPESLRGPQFDAAWCDELAKWRYAEACFDTLQFGLRLGLQPRQLV 179 Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285 T R + P + + F + ++ RY + R E+ Sbjct: 180 T--TTPRPLPLIKRLLADPRTR-VTRAPTKANADHLSPAFLDAVVGRYAGT-RMGRQELD 235 Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE---GGDKTVV 334 G+ + + IE R A A +++ D G G D + Sbjct: 236 GEMIEDRADALWSRALIESC--RVAQPPGLARVVVAIDPPGTSKVGADACGI 285 >gi|49476071|ref|YP_034112.1| phage related protein [Bartonella henselae str. Houston-1] gi|49238879|emb|CAF28172.1| phage related protein [Bartonella henselae str. Houston-1] Length = 402 Score = 85.8 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 31/261 (11%), Positives = 65/261 (24%), Gaps = 30/261 (11%) Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I+C + L + E+ + + P +Y + D + Sbjct: 18 ILCARQFQNSLNESSLEEIKRAIESYP------------FLQDYYEIGDKYIKSKDGRIV 65 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN---RFWIM 226 + + + DEA + ++++ E + W+ Sbjct: 66 YVFAGLDR----NIASIKSMGRVFLCWVDEAEPVTETAWQTLIPTLREEGNDWNAELWVT 121 Query: 227 TSNTRRLNGWFYDIFNIPLEDW-KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285 N R N F K +I R + + + Sbjct: 122 W-NPCRENAPVEKRFRNVNNPHIKGAEITWRDNPQFPEKLNRDRKADLEQRPEHYNHIWE 180 Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI---MGCDIAGEG--GDKTVVVFRRGN 340 G++ Q + +E + PL+ + DI G G D T + + Sbjct: 181 GEYLQTVEGAYYQKALLEASREGRITTVPRDPLMQIRIFWDIGGTGAKADATALWVAQ-- 238 Query: 341 IIEHIFDWSAKLIQETNQEGC 361 + E + Sbjct: 239 --FVGREIRVLDYYEAQGQPL 257 >gi|254362872|ref|ZP_04978947.1| bacteriophage terminase large subunit [Mannheimia haemolytica PHL213] gi|153094509|gb|EDN75343.1| bacteriophage terminase large subunit [Mannheimia haemolytica PHL213] Length = 410 Score = 85.4 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 40/256 (15%), Positives = 71/256 (27%), Gaps = 28/256 (10%) Query: 84 AGRGIGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 GRG GKT A M R I+C L+ + EV + + P Sbjct: 26 GGRGSGKTRAFAKMSAVSAYKRAMRGESGVILCGREFMNSLEESSLEEVKQAIKSEP--- 82 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + ++ + D + + +S R + + + DE Sbjct: 83 ---------FLANFFDVGEKYVRTKDGRISYV----FSGLRHNLDSIKSKARILIAWIDE 129 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-PLEDWKRYQIDTRTV 258 A + + ++ E N W+ N F P E+ ++ + Sbjct: 130 AETVSETAWRKLIPTVRENNSE-IWVTW-NPENRGSATDTRFRQNPPENSCIIEMSYQDN 187 Query: 259 EGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317 + ++ D R G + + Y E + + D P Sbjct: 188 PWFPDVLEQERLNDKQRLDDATYRWIWEGDYLESSDAQIFRDKYQE--LEFKPNPDFNGP 245 Query: 318 LIMGCDIAGEGGDKTV 333 G D G D T Sbjct: 246 YY-GLDF-GFANDPTA 259 >gi|171914351|ref|ZP_02929821.1| hypothetical protein VspiD_24270 [Verrucomicrobium spinosum DSM 4136] Length = 450 Score = 85.4 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 82/282 (29%), Gaps = 32/282 (11%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 + + FK + + R GK +A ++ R + + A SE Q TL S+W Sbjct: 17 DDESRFKYGLWS-RQTGKDFSSAAEIVRDCKLRDKTTWMIAAPSERQSLETLAKC-SEWS 74 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 + + G A L + + + I P Sbjct: 75 EAF----DLASEGIREERDGPEALLKQGEIKFANGSRVIA-------VPGRPDTVRGFSA 123 Query: 193 MAVFNDEASG--TPDIINKSILGFFTEL--NPNRFWIMTSNTRRLNGWFYDIF---NIPL 245 V E + PD ++IL T + + + +D++ N Sbjct: 124 N-VLMTEFAFFEDPDATWRAILPSITNPLRGGEKKVRLITTPNGQGNKAHDLWTKENSTK 182 Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI--- 302 W ++++ + D + E +F + + I Sbjct: 183 HKWSKHKVTIHDAVAAGLPVDPEELRAMLDDPEGWAQEYECEFLDAA-GVLLSYELIGSC 241 Query: 303 EEAMSREAIDDLYA------PLIMGCDIAGEGGDKTVVVFRR 338 E + D + PL G D A + D +V+ + Sbjct: 242 EAPEATTTQPDAFWAARPQFPLYAGWDFARK-KDLSVLWTAQ 282 >gi|49474625|ref|YP_032667.1| phage related protein [Bartonella quintana str. Toulouse] gi|49240129|emb|CAF26575.1| phage related protein [Bartonella quintana str. Toulouse] Length = 402 Score = 85.4 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 30/261 (11%), Positives = 66/261 (25%), Gaps = 30/261 (11%) Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I+C + L + E+ + + + P +Y + D + Sbjct: 18 ILCARQFQNSLNESSLEEIKRAIEVYP------------FLQDYYEIGDKYIKSKDGRII 65 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN---RFWIM 226 + + + DEA + ++++ E + W+ Sbjct: 66 YVFAGLDR----NIASIKSMGRVFLCWVDEAEPVTETAWQTLIPTLREEGKDWNAELWVT 121 Query: 227 TSNTRRLNGWFYDIFNIPLE-DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285 N R N F + K +I+ R + + + Sbjct: 122 W-NPCRENAPVEKRFRNVENPNIKGAEINWRDNPLFPQKLNRDRKADLQQRPENYNHIWE 180 Query: 286 GQFPQQEVNNFIPHNYIEE---AMSREAIDDLYAPLIMGCDIAGEG--GDKTVVVFRRGN 340 G++ Q + +E D + + DI G G D T + + Sbjct: 181 GEYLQSVQGAYYQKALLEAELEGRITNVPRDPLMQIKIFWDIGGTGAKADATALWVAQ-- 238 Query: 341 IIEHIFDWSAKLIQETNQEGC 361 + E + Sbjct: 239 --FIGREIRVLDYYEAQGQPL 257 >gi|89071120|ref|ZP_01158320.1| Putative large terminase [Oceanicola granulosus HTCC2516] gi|89043331|gb|EAR49553.1| Putative large terminase [Oceanicola granulosus HTCC2516] Length = 444 Score = 85.4 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 38/264 (14%), Positives = 70/264 (26%), Gaps = 32/264 (12%) Query: 81 AISAGRGIGKTTLNAWMMLWLIS----TRPGM--SIICIANSETQLKNTLWAEVSKWLSM 134 I GRG GKT A + + T PG + + + Q + + S L+ Sbjct: 57 VILGGRGAGKTRAGAEWVRAQVEGPRATDPGRARRVALVGETIDQAREVMVFGDSGLLAC 116 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 P E + A Sbjct: 117 APPDRRPEWIAGRRLL------------------VWPNGAQAQLFSAHDPEALRGPQFDA 158 Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252 + DE + + + + R + T R + + + Sbjct: 159 AWVDELAKWKKAEEAWDMLQLALRLGDDPRCCVT--TTPRPTALMRALLERD-GTARTHA 215 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + F + RY S + R E+ G + I A + + + Sbjct: 216 PTEANAANLARAFLAEVRRRYAG-SPLGRQELDGVMLSEIEGALWSAGAI-AAANCDVVP 273 Query: 313 DLYAPLIMGCDIAGEGGDKTVVVF 336 DL+ +++ D + GGD +V Sbjct: 274 DLH-RVVVAVDPSAGGGDVCGIVV 296 >gi|171915351|ref|ZP_02930821.1| hypothetical protein VspiD_29290 [Verrucomicrobium spinosum DSM 4136] Length = 451 Score = 85.4 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 44/282 (15%), Positives = 83/282 (29%), Gaps = 32/282 (11%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 + + FK + + R GK +A ++ R + + A SE Q TL +W Sbjct: 18 DDESRFKYGLWS-RQTGKDFSSAAEIVRDCKLRDKTTWMIAAPSERQSLETLAKC-GEWS 75 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 + + G A L + + + I P Sbjct: 76 EAF----DLASEGIREERDGPEALLKQGEIKFANGSRVIA-------VPGRPDTVRGFSA 124 Query: 193 MAVFNDEASG--TPDIINKSILGFFTEL--NPNRFWIMTSNTRRLNGWFYDIF---NIPL 245 V E + PD ++IL T + + + +D++ N Sbjct: 125 N-VLMTEFAFFEDPDATWRAILPSITNPLRGGEKKVRLITTPNGQGNKAHDLWTKENSTK 183 Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI--- 302 W ++++ + D + E +F +P+ I Sbjct: 184 HKWSKHKVTIHDAVAAGLPVDPEELRAMLDDPEGWAQEYECEFLDSA-GVLLPYELIATC 242 Query: 303 EEAMSREAIDDLYA------PLIMGCDIAGEGGDKTVVVFRR 338 E A + D + PL G D A + D +V+ + Sbjct: 243 EAAEATTTQADAFWNARQQFPLYAGWDFARK-KDLSVLWTAQ 283 >gi|37527280|ref|NP_930624.1| hypothetical protein plu3406 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786714|emb|CAE15780.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 418 Score = 85.4 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 77/266 (28%), Gaps = 30/266 (11%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GRG GK+ A ++ L+ M+I+C + + +++ A + + L H++++ Sbjct: 28 GGRGGGKSVEIARALV-LLGAIEPMTILCAREFQNSINDSVLALLEAQIIDLGLSHFYKV 86 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 ++ + + + H + +EA Sbjct: 87 KNN--------------EIEGQNGTRFTFKGL--RNNIQSIKSMHG--IKICWVEEAQTV 128 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW-----KRYQIDTRTV 258 + N + W+ N R Y + ED +++ Sbjct: 129 SQDSWDILGPTVR-ANKSEVWVSF-NPREEEDPTYKLMTRHQEDPSDGGVIIRKVNYCDN 186 Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318 + + +D + LG Y EA S + + L Sbjct: 187 AFFPDVLRQEMEYCKRIDYEAYEHIWLGLPKALSEAVIFSGKYRVEAFS-DELWLEADRL 245 Query: 319 IMGCDIAGEGGDKTVV--VFRRGNII 342 G D G D + + F G + Sbjct: 246 FYGADF-GFANDPSTLVRCFIIGTKL 270 >gi|261495269|ref|ZP_05991723.1| bacteriophage terminase large subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309094|gb|EEY10343.1| bacteriophage terminase large subunit [Mannheimia haemolytica serotype A2 str. OVINE] Length = 406 Score = 85.0 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 44/292 (15%), Positives = 77/292 (26%), Gaps = 35/292 (11%) Query: 84 AGRGIGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 GRG GKT A M R I+C L+ + EV + + P Sbjct: 26 GGRGSGKTRAFAKMSAVSAYKRAMQGESGVILCGREFMNSLEESSLEEVKQAIKSEP--- 82 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + ++ + D + + +S R + + + DE Sbjct: 83 ---------FLANFFDVGEKYVRTKDGRISYV----FSGLRHNLDSIKSKARILIAWIDE 129 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-PLEDWKRYQIDTRTV 258 A + + ++ E N W+ N F P E+ ++ + Sbjct: 130 AETVSETAWRKLIPTVRENNSE-IWVTW-NPENRGSATDTRFRQNPPENSCIIEMSYQDN 187 Query: 259 EGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317 + ++ D R G + + Y E M D P Sbjct: 188 PWFPDVLEQERLNDKQRLDDATYRWIWEGAYLEASEAQIFRGKYQE--MEFVPNPDFDGP 245 Query: 318 LIMGCDIAGEGGDKTVV---VFRRGNIIEHIFDWS----AKLIQETNQEGCP 362 G D G D T G++ + +G P Sbjct: 246 YY-GLDF-GFAQDPTAAVKCWVFNGDLYIEFEAGKVGLELDDTADFIAKGVP 295 >gi|317120885|ref|YP_004100888.1| hypothetical protein Tmar_0036 [Thermaerobacter marianensis DSM 12885] gi|315590865|gb|ADU50161.1| hypothetical protein Tmar_0036 [Thermaerobacter marianensis DSM 12885] Length = 410 Score = 84.6 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 48/287 (16%), Positives = 84/287 (29%), Gaps = 31/287 (10%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 E + ++ I AGRG GKT A + + I + Sbjct: 9 AEALLYDWRFWARPKQLPPEGPWRIWLILAGRGFGKTRTGAEWVREQVERHGRRRIAIVG 68 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 + +++ + S LS+ P + + Sbjct: 69 RTAADVRDVMVEGESGILSISPPWFRPVYEPSKRRLT------------------WPNGA 110 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRR 232 + D A + DE + P+ + + G +P ++ + T R Sbjct: 111 IATLYSADEPDLLRGPQHDAAWADELAAWRRPEAWDNLMFGLRLGPDPR---VVVTTTPR 167 Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292 D+ N P + F E IISRY + + R E+ G+ Sbjct: 168 PVKLIRDLLNDPT-CVVTRGSTYENAANLAPAFLEQIISRY-EGTRLGRQELYGEVLDDV 225 Query: 293 VNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE---GGDKTVVVF 336 I+E REA +++ D A G D+T +V Sbjct: 226 PGALWQRKRIDELRVREAP--ELVRVVVAIDPAVTSEEGSDETGIVV 270 >gi|149203834|ref|ZP_01880803.1| Putative large terminase [Roseovarius sp. TM1035] gi|149142951|gb|EDM30993.1| Putative large terminase [Roseovarius sp. TM1035] Length = 419 Score = 84.6 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 39/312 (12%), Positives = 78/312 (25%), Gaps = 36/312 (11%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAI-SAGRGIGKTTLNAWMMLWLISTRPG------MSI 110 + + ++ + GRG GKT A + + I Sbjct: 2 ALPYLFEFWALPHQLPPSGDWRTWVIMGGRGAGKTRAGAEWVRSEVEGARPMDSGRCKRI 61 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + + Q++ + S L+ P E Q+ Sbjct: 62 ALVGETIDQVREVMIFGESGILACSPPDRRPEWQATRKRL------------------IW 103 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTS 228 G + DE + + R + Sbjct: 104 PNGAVAQAFSAHDPEGLRGPQFDGAWVDELAKWKRARETWDMLQFGLRLGEAPRVCVT-- 161 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 T R G DI P + F + + +RY + R E+ G Sbjct: 162 TTPRNVGVLKDILATPST-VTSSAPTEANRAHLAESFLDEVRARYAGT-RLGRQELDGLL 219 Query: 289 PQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEG---GDKTVVVFRRGNIIEHI 345 + + +E A R + +++ D G D+ ++ + Sbjct: 220 IDEAEDALWSPAMLEAA--RVDTLPEFDRVVVAVDPPVSGHAASDECGIIVVGAITRGPV 277 Query: 346 FDWSAKLIQETN 357 DW A ++ + + Sbjct: 278 QDWRAYVLADAS 289 >gi|85702762|ref|ZP_01033866.1| Putative large terminase [Roseovarius sp. 217] gi|85671690|gb|EAQ26547.1| Putative large terminase [Roseovarius sp. 217] Length = 419 Score = 84.6 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 36/280 (12%), Positives = 70/280 (25%), Gaps = 35/280 (12%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134 I GRG GKT A + + I + + Q++ + S ++ Sbjct: 26 VIMGGRGAGKTRAGAEWVRAQVEGSRPLDEGRCKRIALVGETIDQVREVMVFGESGIMAC 85 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 P + Q+ Sbjct: 86 SPPDRRPDWQATRKRL------------------IWPNGAVAQAYSAHDPEALRGPQFDG 127 Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252 + DE + + + R + T R G DI +P Sbjct: 128 AWVDELAKWKRARETWDMLQFGLRLGDAPRVCVT--TTPRNVGVLKDIVAVPST-VVTSA 184 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + F + + +RY + R E+ G + + +E A R Sbjct: 185 PTEANRAYLAESFLDEVRARYAGT-RLGRQELDGLLIDEAEDALWTPAMLEAA--RVESL 241 Query: 313 DLYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWS 349 + +++ D G D+ ++ + DW Sbjct: 242 PEFDRVVVAVDPPVTGHAGSDECGIIMAGAITRGPVQDWR 281 >gi|307263070|ref|ZP_07544692.1| Phage terminase, large subunit, PBSX family [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306871696|gb|EFN03418.1| Phage terminase, large subunit, PBSX family [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 407 Score = 84.6 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 39/266 (14%), Positives = 69/266 (25%), Gaps = 31/266 (11%) Query: 84 AGRGIGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 GRG KT A M R I+C L+ + EV + + Sbjct: 27 GGRGSAKTRTFALMTAVWALRRDQAGDSGVILCAREYMNSLEESSLEEVKQAIR------ 80 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + W ++ R + + + +E Sbjct: 81 ----------STSWLEPHFVIGEKFIKTKSGRISYVFAGLRHNLDSIKSKARILLAWVEE 130 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL-EDWKRYQIDTRTV 258 A ++ + + E N W+ N + F + E+ K +++ Sbjct: 131 AETVSEVAWQKLEPTVREHNSE-IWVTW-NPEKRGSATDLRFRRHVPENAKIIEMNYSDN 188 Query: 259 EGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317 + ++ D R G + +Q Y E + E D P Sbjct: 189 PWFPKELEQTRLADKARLDDATYRWIWEGAYLEQSEAQIFRDKYQE--LEFEPNPDFDGP 246 Query: 318 LIMGCDIAGEGGDKTVV---VFRRGN 340 G D G D T G+ Sbjct: 247 YH-GLDF-GFANDPTAAIKCWVFDGD 270 >gi|84687436|ref|ZP_01015314.1| Putative large terminase [Maritimibacter alkaliphilus HTCC2654] gi|84664594|gb|EAQ11080.1| Putative large terminase [Rhodobacterales bacterium HTCC2654] Length = 426 Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 38/291 (13%), Positives = 77/291 (26%), Gaps = 36/291 (12%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAI-SAGRGIGKTTLNAWMMLWLISTRPG------MSI 110 + V + ++ + GRG GKT A + + + Sbjct: 8 ALPYVFEFWALDHQLPPEGDWRTWVILGGRGAGKTRAGAEWVRAQVEGPAPLSPGRAGRV 67 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 I + Q+++ + S ++ P ++ Sbjct: 68 ALIGETFDQVRDVMVFGDSGIVACAPPDRRPAWEATKRRL------------------VW 109 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTS 228 T + G A + DE + D + + R ++T+ Sbjct: 110 PNGATATSFSASEPEGLRGPQFDAAWADELAKWKKVDDAWDMLQFALRLGDHPR-QVVTT 168 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 R + + T + F E I +RYG + R E+ G Sbjct: 169 TPRDV--PILRRLLTLSSTVTTHAPTTANRANLAKSFLEEIEARYGGT-RLGRQELEGVL 225 Query: 289 PQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVVVF 336 F +E+ R + +++ D G D+ +V Sbjct: 226 LDDREGAFWSTAMLEDC--RIDGPPPLSRIVVAVDPPVTGHAGSDECGIVV 274 >gi|307252059|ref|ZP_07533958.1| Phage terminase, large subunit, PBSX family [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860359|gb|EFM92373.1| Phage terminase, large subunit, PBSX family [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 407 Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 39/266 (14%), Positives = 69/266 (25%), Gaps = 31/266 (11%) Query: 84 AGRGIGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 GRG KT A M R I+C L+ + EV + + Sbjct: 27 GGRGSAKTRTFALMTAVWALRRDQAGDSGVILCAREYMNSLEESSLEEVKQAIR------ 80 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + W ++ R + + + +E Sbjct: 81 ----------STSWLEPHFVIGEKFIKTKSGRISYVFAGLRHNLDSIKSKARILLAWVEE 130 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL-EDWKRYQIDTRTV 258 A ++ + + E N W+ N + F + E+ K +++ Sbjct: 131 AETVSEVAWQKLEPTVREHNSE-IWVTW-NPEKRGSATDLRFRRHVPENAKIIEMNYSDN 188 Query: 259 EGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317 + ++ D R G + +Q Y E + E D P Sbjct: 189 PWFPKELEQTRLADKARLDDATYRWIWEGAYLEQSEAQIFRDKYQE--LEFEPNPDFDGP 246 Query: 318 LIMGCDIAGEGGDKTVV---VFRRGN 340 G D G D T G+ Sbjct: 247 YY-GLDF-GFANDPTAAIKCWVFDGD 270 >gi|303251622|ref|ZP_07337796.1| hypothetical protein APP6_0825 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302649620|gb|EFL79802.1| hypothetical protein APP6_0825 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 409 Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 39/266 (14%), Positives = 69/266 (25%), Gaps = 31/266 (11%) Query: 84 AGRGIGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 GRG KT A M R I+C L+ + EV + + Sbjct: 29 GGRGSAKTRTFALMTAVWALRRDQAGDSGVILCAREYMNSLEESSLEEVKQAIR------ 82 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + W ++ R + + + +E Sbjct: 83 ----------STSWLEPHFVIGEKFIKTKSGRISYVFAGLRHNLDSIKSKARILLAWVEE 132 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL-EDWKRYQIDTRTV 258 A ++ + + E N W+ N + F + E+ K +++ Sbjct: 133 AETVSEVAWQKLEPTVREHNSE-IWVTW-NPEKRGSATDLRFRRHVPENAKIIEMNYSDN 190 Query: 259 EGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317 + ++ D R G + +Q Y E + E D P Sbjct: 191 PWFPKELEQTRLADKARLDDATYRWIWEGAYLEQSEAQIFRDKYQE--LEFEPNPDFDGP 248 Query: 318 LIMGCDIAGEGGDKTVV---VFRRGN 340 G D G D T G+ Sbjct: 249 YY-GLDF-GFANDPTAAIKCWVFDGD 272 >gi|83943081|ref|ZP_00955541.1| hypothetical protein EE36_12908 [Sulfitobacter sp. EE-36] gi|83846089|gb|EAP83966.1| hypothetical protein EE36_12908 [Sulfitobacter sp. EE-36] Length = 259 Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 34/264 (12%), Positives = 70/264 (26%), Gaps = 38/264 (14%) Query: 48 FSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107 +P WQ++ + + SN +GR GK+T + G Sbjct: 29 IGEPDAWQVDLLRS--------DPRSNEADRMILALSGRQSGKSTTAGGLG--YDDFSRG 78 Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 ++I A S Q L+ + ++ + P + + + Sbjct: 79 KTVILTAPSLRQSTE-LFRRILEYKNTDPFC-------------PPIVRQTQTELEAHPR 124 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227 H + DEA D + E + Sbjct: 125 H------GGRIIVVPATDQARGMTADTIIADEACFLDDDALTAFFPMRKETGR---IFLL 175 Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287 S G+FY+ + + +R + + + + + R E L + Sbjct: 176 STPNMRQGYFYETWTSA-KRVRRITARSIDIPRRKAQVEFD---KATMSEATFRREHLCE 231 Query: 288 FPQQEVNNFIPHNYIEEAMSREAI 311 F + +E+A + Sbjct: 232 FI-GAGTPLVSWEALEKASNPNVK 254 >gi|145579924|pdb|2O0H|A Chain A, T4 Gp17 Atpase Domain Mutant Complexed With Atp gi|145579925|pdb|2O0J|A Chain A, T4 Gp17 Atpase Domain Mutant Complexed With Adp gi|145579926|pdb|2O0K|A Chain A, T4 Gp17 Atpase Domain Mutant Length = 385 Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 36/306 (11%), Positives = 84/306 (27%), Gaps = 52/306 (16%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + R Q + + E +C F + + +Q + ++ Sbjct: 118 LKRANIKTQWTREMVEEWK---KCRDDIVYFAETYCAITHIDYGVIKVQ-LRDYQRDMLK 173 Query: 61 AVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119 + + + R +GKTT+ A + + ++ +A+ + Sbjct: 174 IMS-------------SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSM 220 Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 L + + +LP E + S+ +D+ Sbjct: 221 SAEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSI-------GA 261 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 + ++ ++ + P+ +I + ++ I+ + T F Sbjct: 262 YASSPDAVRGNSFAMIYIEDCAFIPNFHDSWLAIQPVISSGRRSK--IIITTTPNGLNHF 319 Query: 238 YDIFNIPLED----------WKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 YDI+ +E W + + D G+ I + G R E Sbjct: 320 YDIWTAAVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSSLAQFRQEHTA 379 Query: 287 QFPQQE 292 F Sbjct: 380 AFEGTS 385 >gi|260427953|ref|ZP_05781932.1| phage DNA Packaging Protein [Citreicella sp. SE45] gi|260422445|gb|EEX15696.1| phage DNA Packaging Protein [Citreicella sp. SE45] Length = 409 Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 47/297 (15%), Positives = 87/297 (29%), Gaps = 37/297 (12%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134 I GRG GKT A + + + I + Q++ + S ++ Sbjct: 15 VIMGGRGAGKTRAGAEWVRACVEGAMPLSPGRCKRVALIGETMDQVREVMVFGESGIMNC 74 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 P E Q+ G A Sbjct: 75 SPPDRRPEWQATRRCL------------------VWPNGAEAMVFSAHDPEGLRGPQFDA 116 Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252 + DE + + + + T R G ++ +P Sbjct: 117 AWVDELAKWKKARETWDMLQFALRLGEHPQVCVT--TTPRNVGILKELLELPST-VVTRA 173 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + F E + +RYG +S +AR E+ G ++ A + A Sbjct: 174 KTEANRANLAESFLEEVRARYG-NSRLARQELDGILVTDVDGALWTGEMLDRAQAL-APP 231 Query: 313 DLYAPLIMGCD-IAGEG--GDKTVVVFRRGNIIE-HIFDWSAKLIQETNQEG-CPVG 364 + +++ D AG+G D +V G + E W A ++++ + +G P G Sbjct: 232 ATFDRIVVAVDPPAGDGKASDACGIVVA-GVVCEGPPQAWRAWVLEDASVQGVSPTG 287 >gi|307544683|ref|YP_003897162.1| hypothetical protein HELO_2093 [Halomonas elongata DSM 2581] gi|307216707|emb|CBV41977.1| K06909 [Halomonas elongata DSM 2581] Length = 531 Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 34/269 (12%), Positives = 72/269 (26%), Gaps = 22/269 (8%) Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 R +G + L + + PGM++ + E + + FE Sbjct: 101 RDMGMSWLTIGLGCTVCLHHPGMAVGFGSRKEEYVDKIGSP-----------KSLFEKAR 149 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP-HNTHGMAVFNDEASGTP 204 + + + T S ++ G DE++ Sbjct: 150 SFMSMLPREFRGGWERKRHAPHMRIMFPETESVMTGESGDGIGRGDRTGFYIVDESAFLE 209 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264 T S + F + + R D Sbjct: 210 RPHLVDASLSATTNCRQD----VSTPNGMGNPFAQRRH--SGKISVFTFHWRDDPRKDDA 263 Query: 265 FHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGC 322 ++ + D EI + IP +++ A+ ++ + Sbjct: 264 WYAKQVDEL--DPVTVAQEIDINYSASVEGVLIPSAWVQAAVDAHKKLGIEITGERLGAL 321 Query: 323 DIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 D+A EG D+ R G +++ + +W+ K Sbjct: 322 DVADEGKDQNAYAGRHGILLDLVDEWTGK 350 >gi|149913871|ref|ZP_01902403.1| hypothetical protein RAZWK3B_17748 [Roseobacter sp. AzwK-3b] gi|149812155|gb|EDM71986.1| hypothetical protein RAZWK3B_17748 [Roseobacter sp. AzwK-3b] Length = 419 Score = 83.8 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 36/297 (12%), Positives = 71/297 (23%), Gaps = 35/297 (11%) Query: 70 VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNT 123 I GRG GKT A + + + + + Q++ Sbjct: 15 QVPPEGDWRNWVILGGRGAGKTRAGAEWVRAQVEGARPLSEGLCRRMALVGETIDQVREV 74 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 + S ++ P + Q+ Sbjct: 75 MIFGESGIMACSPPDRRPDWQATRKRL------------------VWPNGAVAQAFSAHE 116 Query: 184 FVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241 + DE + + + + I T R G D+ Sbjct: 117 PEALRGPQFDGAWVDEMAKWKKARDTWDMLQFGLRLGDHPQVCIT--TTPRNVGVLKDLL 174 Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301 + F E + +RY + R E+ G + ++ Sbjct: 175 EQKST-VVTSAPTEANRAFLAQSFLEEVRARYAGT-RLGRQELDGVLLSEAEGALWTNSG 232 Query: 302 IEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355 IE R +++ D G D+ +V + DW A ++ + Sbjct: 233 IEAC--RVDNLPELDRIVVAIDPPVTGRAGSDECGIVVAGAVTRGPVQDWRAYVLAD 287 >gi|84517307|ref|ZP_01004661.1| putative large terminase [Loktanella vestfoldensis SKA53] gi|84508787|gb|EAQ05250.1| putative large terminase [Loktanella vestfoldensis SKA53] Length = 426 Score = 83.5 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 33/285 (11%), Positives = 73/285 (25%), Gaps = 30/285 (10%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 I GRG GKT A + + I + + Q + + S +++ P Sbjct: 40 VILGGRGAGKTRAGAEWVR-RMVASGARRIAVVGETYHQAREVMVFGDSGIMAVCPPDAR 98 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + + + A + DE Sbjct: 99 PKWIATRQML------------------VWPNGAQATLFSAQDPEALRGPQFDAAWVDEL 140 Query: 201 SGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 + + + R + T R + + P + + Sbjct: 141 AKWRKAAATWDMLQFGLRLGDAPRVCVT--TTPRRQALLRKLLDRPST-VVTHAPTSANR 197 Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318 + F + + Y + R E+ G + A + Sbjct: 198 ANLADSFLAEMTAEYAGT-ALGRQELEGVMLDDVDGALWQMGALAACQVDRAPP--LTRI 254 Query: 319 IMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360 ++ D A G D ++ + + DW A ++++ + +G Sbjct: 255 VVAIDPPTTAHAGSDACGIIVAGVVMAGPVQDWRAYVLEDASLQG 299 >gi|78043214|ref|YP_360500.1| prophage LambdaCh01, PBSX family terminase large subunit [Carboxydothermus hydrogenoformans Z-2901] gi|77995329|gb|ABB14228.1| prophage LambdaCh01, terminase, large subunit, PBSX family [Carboxydothermus hydrogenoformans Z-2901] Length = 420 Score = 83.5 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 33/249 (13%), Positives = 71/249 (28%), Gaps = 23/249 (9%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 + GRG GK++ + ++ + P + + + + LK++++ ++ + L + Sbjct: 30 WLKGGRGSGKSSFASIEIILGMMKDPNANAVVLRKVKETLKDSVFEQLIWAIEKLKVSDY 89 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF---N 197 W + M I R + + + ++ Sbjct: 90 ------------WDIKHNPMEMTYIPTGQKILFRGADKPKKIRSTKVSKGYIKFIWYEEV 137 Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG-WFYDIFNIPLEDWKRYQIDTR 256 DE +G + I T N W + I D K + Sbjct: 138 DEFNGM--EEIRIINQSLMRGGEQFVVFYTYNPPNRVNAWVNEEILIERPDRKVHHSTYL 195 Query: 257 TVE--GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314 TV + F ++ R E LG+ + I + + Sbjct: 196 TVPREWLGEQFLIEAEHLKRINERAYRHEYLGE-ITGTGGEIFSNITIRK--ITDDEIKA 252 Query: 315 YAPLIMGCD 323 + + G D Sbjct: 253 FDRIRRGID 261 >gi|254474412|ref|ZP_05087798.1| phage DNA Packaging Protein [Ruegeria sp. R11] gi|214028655|gb|EEB69490.1| phage DNA Packaging Protein [Ruegeria sp. R11] Length = 417 Score = 83.5 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 44/295 (14%), Positives = 80/295 (27%), Gaps = 43/295 (14%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134 I GRG GKT A + L I + + Q+++ + S L+ Sbjct: 24 VILGGRGAGKTRAGAEWVRALAEGSTPLSAGRARRIALLGETYDQVRDVMVQGDSGILAC 83 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 P + ++ T A Sbjct: 84 TPPDRRPQWKATERRL------------------IWPNGATAQAFSAHDPEALRGPQFDA 125 Query: 195 VFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252 + DE + + R + T R D+ P + + Sbjct: 126 AWADELAKWKRGQDSWDMLQFALRLGTDPRVCVT--TTPRNVSVLRDLLASPST-VQTHA 182 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + + F E + +RY S + R E+ G Q + + A R A Sbjct: 183 ATEANRANLATSFIEEVRNRYAG-SRLGRQELDGVLLQDVEGALWCNAGLVGAQVRSAPP 241 Query: 313 DLYAPLIMGCDI---AGEGGDKTVV----VFRRGNIIEHIFDWSAKLIQETNQEG 360 +++ D AG+ D + +G DW A ++ + +G Sbjct: 242 --LDRVVVAVDPAVSAGKSSDACGILVVGAVLQGPP----QDWRAYVLADCTVQG 290 >gi|168820654|ref|ZP_02832654.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205342611|gb|EDZ29375.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 539 Score = 83.1 bits (203), Expect = 7e-14, Method: Composition-based stats. Identities = 50/367 (13%), Positives = 107/367 (29%), Gaps = 44/367 (11%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIKGKP--LEHFSQ---- 50 P I + + L + E + + + F WG+ P L++ Sbjct: 12 PDYIQVFEWRMERLQRIRKAPETLPALRQFYRTNPAQFIIDWGMTTDPRNLDYGLPVTIP 71 Query: 51 ----PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 P Q E+++ + ++ N R +G + + + L Sbjct: 72 FLLFPR--QEEWIDWIMERSRNHENGLTEKS--------REMGLSWTSVGLASALCLFNR 121 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 M I + E + +T+ + ++ F + GW + M ++ Sbjct: 122 EMVIGFGSRKEEYVDSTVDPK-----ALFWKVRKFIATLPAEFRGGWDERKHSRFMSVEF 176 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226 + + + F DEA+ + T I Sbjct: 177 PDTGAVIKGEAGDNIG-----RGDRTTLYFVDEAAFLQRPLLIDAALSQTTRCR----ID 227 Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 S+ +N F + + R+ D ++ + + + E+ Sbjct: 228 LSSVNGMNNPFAQKRH--SGKISVFTFHWRSDPRKDDEWYRKECEKI-DNPIIVAQELDL 284 Query: 287 QFPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEH 344 + IP +++ A+ + D+A EG DK R G ++ Sbjct: 285 NYQASAEGILIPSEWVQAAVDAHIKLGIQPSGQRLGAMDVADEGRDKNACSLRYGFLLSD 344 Query: 345 IFDWSAK 351 + +WS K Sbjct: 345 VQEWSGK 351 >gi|312262635|gb|ADQ52930.1| gp17 terminase DNA packaging enzyme large subunit [Aeromonas phage PX29] Length = 406 Score = 82.7 bits (202), Expect = 8e-14, Method: Composition-based stats. Identities = 37/271 (13%), Positives = 81/271 (29%), Gaps = 52/271 (19%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFV-----MRFFPWGIKGKPLEHFSQPHRWQ 55 + R + + + E C F + WG+ L +Q Sbjct: 114 LKRANVPTKWTREMVEEWK---RCRDDIVYFAETYCSIIHIDWGVIKVQL------RDYQ 164 Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 + + + ++ P R +GKTT A + + ++ +A+ Sbjct: 165 KDMLRIMAT--ERMSIHNLP----------RQLGKTTATAIFLTHFVVFNEAKAVGVLAH 212 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 K L + + +LP E + ++ +++ Sbjct: 213 KGDMSKEVLER-TKQSIELLPD-----------FLQPGIVEWNKGNIELENGCSI----- 255 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRL 233 + ++ DEA+ D K+IL + +R I+ ++T Sbjct: 256 --GAYASSPDAVRGNSFALIYLDEAAFIENFDDTWKAILPVISSGRKSR--IILTSTPNG 311 Query: 234 NGWFYDIFN---IPLEDWKRYQIDTRTVEGI 261 +YD++ + +K Y TV+ Sbjct: 312 INHWYDLWEVSINSDKGFKPYTTTWITVKER 342 >gi|315518961|dbj|BAJ51838.1| putative packaging maturation protein B [Ralstonia phage RSB2] Length = 593 Score = 82.7 bits (202), Expect = 9e-14, Method: Composition-based stats. Identities = 53/415 (12%), Positives = 101/415 (24%), Gaps = 87/415 (20%) Query: 5 ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64 +S +KL+++ E L+H F+ FV W + P P Q + + Sbjct: 1 MSDLKKLQRDTKEALLHKRMQEDFRVFVWFV--WKVINLP-----NPTEIQNDMSHTLQ- 52 Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124 NP + I RG+ K+ + ++W + P + I+ ++ S+ + Sbjct: 53 ---------NPPSRRFIIQGFRGVAKSFITCAYVVWRLWKDPQLKIMIVSASKERADANS 103 Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY-------- 176 + H + K IT + Sbjct: 104 AFIKKIISEIHFLNHLKAKTGQVDTMIKFDVGPKLPDHSPSVKSVGITGQLTGSRADIII 163 Query: 177 --SEERPDTFVGPHNTHGMAVFNDEASGT------------PDIINKSILGFFTELNPNR 222 E P + E P Sbjct: 164 ADDVEVPGNSSTQGARDKLFELVKEFDAILKPGGSVIYLGTPQNEMSLYNELLNRGYTTL 223 Query: 223 FWIMTSNTRR---LNGWFYDIFNIPLEDWKR----YQIDTRTVEGIDSGFHEGIISRYGL 275 W R + + E + E D YG Sbjct: 224 IWPARY-PRDDKQRANYGSRLAPYLAEKYDADPQGLAWKPTDPERFDEQDLLEREVSYGK 282 Query: 276 DSDVARIEILG------QFPQQEVNNFIPHNYIEEA-MSREAIDDL-------------- 314 + + + ++P + + + E A MS + + Sbjct: 283 AGFMLQFMLDTSLSDAEKYPLRLRDLIVAQFGRERAPMSHDWLPGPALEASALPQIGLKG 342 Query: 315 ---YAPL------------IMGCDIAGEGGDKT---VVVFRRG-NIIEHIFDWSA 350 Y P ++ D +G G D+T V+ F G + + + Sbjct: 343 DRYYNPYASAKEMSNYFGKVLAIDPSGRGKDETGYAVMYFLNGYLYLMEVGGFRG 397 >gi|294650848|ref|ZP_06728195.1| bacteriophage terminase large subunit TerL [Acinetobacter haemolyticus ATCC 19194] gi|292823266|gb|EFF82122.1| bacteriophage terminase large subunit TerL [Acinetobacter haemolyticus ATCC 19194] Length = 552 Score = 82.7 bits (202), Expect = 9e-14, Method: Composition-based stats. Identities = 56/385 (14%), Positives = 110/385 (28%), Gaps = 53/385 (13%) Query: 1 MPRLISTDQKLEQ-ELHEMLMHAECVLSFKNFVMRFFPWGIK------GKPLEHFSQPHR 53 M R EQ EL +C ++ + W G P Sbjct: 28 MSRRYYYKAVTEQSELSIQAEIYKCKNDPIHWFNH-WIWTYDPRGMSFGLPANIPFVLRP 86 Query: 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 Q+E +E + ++ + I R G + + L G + Sbjct: 87 KQVELVEWLSERENTQTHG--------LIEKSRDEGMSYVVLGYFLHRWLFVDGFAGGVG 138 Query: 114 ANSETQLKN-----TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 + E + TL+ + S +P + P+G+ ++ + M I + Sbjct: 139 SRKEELVDKKGDPKTLFHKFRDMFSKMPDW---------MKPTGFVEKVHDNYMRIINPD 189 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 T + + F DE + +++ ++ I S Sbjct: 190 NGATITGEAGDNIG-----RGGRTTMYFLDEWAFVERQ--EAVDAAISQNTN--VHIKGS 240 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE--GIDSGFHEGIISRYGLDSDVA------ 280 + F+ + + + R ++ I + Sbjct: 241 TPNGIGDRFHQD--RFSGRYAVFSMPWRANPDKNWTVEYNGKQIHPWYEKQLATLDDVVL 298 Query: 281 RIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRR 338 E+ + IP +++ A+ + I G D+A EG DK R Sbjct: 299 AQEVDINYAASVEGVLIPSTWVQLAIDAHIKLGIEPTGDRIAGLDVADEGKDKNSFASRH 358 Query: 339 GNIIEHIFDWSAK--LIQETNQEGC 361 G ++ ++ WS K I T Q+ Sbjct: 359 GIVMTYLDTWSGKGDDIFGTTQKAM 383 >gi|119869106|ref|YP_939058.1| phage terminase [Mycobacterium sp. KMS] gi|119695195|gb|ABL92268.1| phage Terminase [Mycobacterium sp. KMS] Length = 489 Score = 82.7 bits (202), Expect = 9e-14, Method: Composition-based stats. Identities = 52/336 (15%), Positives = 90/336 (26%), Gaps = 61/336 (18%) Query: 29 KNFVMRF--FPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR 86 + FV F KG +P WQ++ + V V P R Sbjct: 27 ERFVKFCEKFLRTPKGTGAREVFRPREWQMDIVRDVLDSGARTVGLMMP----------R 76 Query: 87 GIGKTTLNAWMMLWLISTR-PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 G GKTTL+A ++L++ TR G +++ A E Q + ++ + + Sbjct: 77 GQGKTTLSAAILLYIFFTRGEGANVVLFAVDERQAS-LAFRVAARMVQLSED-------- 127 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 L + DS + + + E +A DEA Sbjct: 128 --LSSRCYVYADKLVLPLTDSTYQVMPASAAAAE---------GLDYVACLCDEAGVINR 176 Query: 206 IINKSILGFFTELNPNRFWIMTSNT-------------------RRLNGWFYDIFNIPL- 245 + + I + F+ Sbjct: 177 DVFEVAQ-LAQGKRERSVLIAIGTPGPDPNDQVLADLRAYAAEHPDDKSLVWREFSAAGF 235 Query: 246 EDWKRYQIDTRT--VEGIDSGFHEGIIS---RYGLDSDVARIEILGQFPQQEVNNFIPHN 300 ED +D H + R L QF F+P Sbjct: 236 EDHGADCPHCWELANPALDDFLHRDALHALLPPKTREATFRRARLCQFSTDTDGAFLPAG 295 Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 E +S + +++ D + G D T ++ Sbjct: 296 VWE-GLSTSSPVPPGVDVVLALDGSYNG-DTTALLV 329 >gi|254240165|ref|ZP_04933487.1| hypothetical protein PA2G_00806 [Pseudomonas aeruginosa 2192] gi|126193543|gb|EAZ57606.1| hypothetical protein PA2G_00806 [Pseudomonas aeruginosa 2192] Length = 342 Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 26/254 (10%), Positives = 71/254 (27%), Gaps = 27/254 (10%) Query: 90 KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLH 149 K+ A ++L + R + I+C + +++++ + ++ L ++E+ Sbjct: 39 KSHGVAQVLL-DMGARNPLRILCAREIQKSMRDSVHRLLRDYIVKLGLTEFYEVLDT--- 94 Query: 150 PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209 + + + + V+ +EA G Sbjct: 95 -----------EIRGRNGTLFLFSGL---QGHTVDSIKSFEGVDIVWVEEAQGVCKKSWD 140 Query: 210 SILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTVEGIDSGFHEG 268 ++ + + + N Y P +D +I+ R ++ Sbjct: 141 VLIPTIRKDGSEIWLTL--NPAMDTDDTYVRFCAAPDDDVWLCEINWRDNPWFPDVLNQE 198 Query: 269 I-ISRYGLDSDVARIEILGQFPQQEVNNFIP---HNYIEEAMSREAIDDLYAPLIMGCDI 324 ++ + + G+ + +E R D P+ D+ Sbjct: 199 RLRAKRSMSQEDYEHIWEGKPRTVAEGAIYRHEILDLMESGRVRPVPYDPLLPVHTVWDL 258 Query: 325 AGEGGDKTVVVFRR 338 D + F + Sbjct: 259 GW--NDAMTIGFVQ 270 >gi|238790716|ref|ZP_04634478.1| Gp33 TerL [Yersinia frederiksenii ATCC 33641] gi|238721211|gb|EEQ12889.1| Gp33 TerL [Yersinia frederiksenii ATCC 33641] Length = 538 Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 49/366 (13%), Positives = 89/366 (24%), Gaps = 43/366 (11%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNF-----VMRFFPWG--------IKGKPLEHF 48 P + + + L + E + + F WG +G P Sbjct: 12 PDYMQVFEWRMERLQRIRQQPEILPIMRAFYKDNPAQFIIDWGMTVDPRNVERGLPARIP 71 Query: 49 SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108 Q E++E + R +G + L M L G+ Sbjct: 72 FLLFPKQEEWIEWFVDRWRNAEPGITEKT--------RDMGMSWLTVGMASSLCLFNRGV 123 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 + E + + F+ + Sbjct: 124 FAGFGSRKEEYVDKIGSP-----------KSLFDKARNFISLLPTEFRGGWSLKQHAPHM 172 Query: 169 YTITCRTYSEERPDTFVGP-HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227 + T S + G DE++ T Sbjct: 173 RILFPETESAMTGEAGDGIGRGDRTSFYIVDESAFLERPYLVDASLSATTNCRQD----V 228 Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287 S + F + + K + R D +++ + D EI Sbjct: 229 STPNGMANSFAERRH--SGKIKVFTFHWRDDPRKDDAWYQKQVENL--DPVTVAQEIDIN 284 Query: 288 FPQQEVNNFIPHNYIEEAMSRE--AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHI 345 + IP +++ A++ + DIA EG D R G ++E I Sbjct: 285 YSASVEGVLIPSAWVQAAINAHEVLGIVPTGQRLGALDIADEGKDTNSFAGRHGFLLESI 344 Query: 346 FDWSAK 351 +WS K Sbjct: 345 EEWSGK 350 >gi|197105675|ref|YP_002131052.1| hypothetical protein PHZ_c2212 [Phenylobacterium zucineum HLK1] gi|196479095|gb|ACG78623.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1] Length = 446 Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 47/337 (13%), Positives = 83/337 (24%), Gaps = 49/337 (14%) Query: 39 GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98 KG PL +P Q+E E + C ++A R GK + Sbjct: 7 REKGLPLTW--EPRPHQVELWETLVDGCRRAD-----------VAAHRRWGKDEVALQWA 53 Query: 99 LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 +PG + Q + +W V+ + + + Sbjct: 54 AVEALEKPG-VYWHLLPEAAQGRKAIWDAVN------------PHTGVRRINEAFPIHVR 100 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218 ++++ + K + D + + V E S + I E Sbjct: 101 KRTLDQEMKVELNNGSVWQVVGSDNYDSLVGSSPRGVVFSEWSLSKPQAWGFIRPILAEN 160 Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLED--WKRYQIDTRTVEGIDSGFHEGIISR---- 272 W + T R F + W + E + + Sbjct: 161 GG---WALFLWTPRGRNHATRAFESRQREAGWFCLKSPATDTEVFTKAQLDQERAELIAE 217 Query: 273 ---YGLDSDVARIEILGQFPQQEVNNFIPHNYIE---EAMSREAIDDLYAPLIMGCDIAG 326 E L F + E D A + D+ Sbjct: 218 LGSREEGEARFASEYLVDFDAAAPGAYYATLLGEAERAGRIGRVPWDPAARVDTAWDLG- 276 Query: 327 EGGDKTVVVFRRGNIIEHIF-DWSAKLIQETNQEGCP 362 D T + F + + + A ET+ EG P Sbjct: 277 -IDDYTAIWFFQ-----QVGREVRAIDYFETSGEGLP 307 >gi|159044721|ref|YP_001533515.1| hypothetical protein Dshi_2178 [Dinoroseobacter shibae DFL 12] gi|157912481|gb|ABV93914.1| hypothetical protein Dshi_2178 [Dinoroseobacter shibae DFL 12] Length = 452 Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 37/267 (13%), Positives = 64/267 (23%), Gaps = 35/267 (13%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134 I GRG GKT A + + + + + Q+++ + S L+ Sbjct: 59 VILGGRGAGKTRAGAEWVRAEVEGARPLDAGRSRRVALVGETYDQVRDVMIFGESGILAC 118 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 P E Q + A Sbjct: 119 SPADRKPEWQGTRRQL------------------VWPNGAIAKCHSANDPEALRGPQFDA 160 Query: 195 VFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252 + DE + P + + R + T R + I K Sbjct: 161 AWVDELAKWPNAEETWDMLQFALRLGVNPRQVVT--TTPRPSTILKQILATGST-VKTTA 217 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + + F E I +RY + R E+ G IE Sbjct: 218 PTEANRAYLAASFLEEIRARYAGT-RLGRQELDGVLLDDVEGALWTSAGIEANRVETVPP 276 Query: 313 DLYAPLIMGCDI---AGEGGDKTVVVF 336 +++ D +G D +V Sbjct: 277 --LDRIVVAVDPPVTGHKGSDACGIVV 301 >gi|71065561|ref|YP_264288.1| PBSX family phage terminase large subunit [Psychrobacter arcticus 273-4] gi|71038546|gb|AAZ18854.1| phage terminase, large subunit, PBSX family [Psychrobacter arcticus 273-4] Length = 421 Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 35/254 (13%), Positives = 65/254 (25%), Gaps = 28/254 (11%) Query: 84 AGRGIGKTTLNAWMMLW----LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 GRG GKT A M L I+C L + E+ + Sbjct: 34 GGRGSGKTRTFALMTAVEGYRLAEAGASGIILCGREFMNSLNESSLEEIKQ--------- 84 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 ++ W + E ++ R + + + + DE Sbjct: 85 -------AIKSVSWLNDYYEIGEKYIRTKNRRVAYAFTGLRHNLDSIKGKSRILLAWVDE 137 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 A + + +L E + WI N F ++ +++ Sbjct: 138 AENVSEAAWRKLLPTVREDDSEV-WITW-NPENKGSATDKRFRQVEHEF-IVEMNHNDNP 194 Query: 260 GIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318 + ++ D R G + + ++ R + P Sbjct: 195 FFPDVLEQERLNDQENLDDATYRWIWEGAYLEASDAQIFNGKFVVREFERHPTWN--GPY 252 Query: 319 IMGCDIAGEGGDKT 332 G D G D T Sbjct: 253 N-GLDF-GFSTDPT 264 >gi|260556808|ref|ZP_05829026.1| P-loop protein [Acinetobacter baumannii ATCC 19606] gi|260410067|gb|EEX03367.1| P-loop protein [Acinetobacter baumannii ATCC 19606] Length = 437 Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 36/298 (12%), Positives = 73/298 (24%), Gaps = 46/298 (15%) Query: 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI------ICIANSETQLKNTLWAEVSK 130 F+ A+ GR GKT L M ++ A + Q K W + + Sbjct: 30 RFRDAVC-GRRFGKTFLAKAEMRRAARLAQKWNVSVEDEIWYAAPTFKQAKRVFWKRLKQ 88 Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190 + ++ T D + + Sbjct: 89 AIPPSWRFGKPNETECTITLK--------------------TGHVIRVVGLDNYDDLRGS 128 Query: 191 HGMAVFNDEASGTPDIIN-KSILGFFT-------ELNPNRFWIMTSNTRRLNGWFYDIFN 242 + DE + + + + + ++ T + YD + Sbjct: 129 GLFFLIIDEWADCKWAAWEEVLRPMLSTCKYTVNGVQRVGGNVLRIGTPKGYNHCYDTWM 188 Query: 243 IPLE----DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIP 298 D K + + I + + D R E F + + Sbjct: 189 DGQNGREPDHKSWIYTSLQGGNIPESEIDVARRKM--DPKTFRQEYEASFETYQGVIYYC 246 Query: 299 HNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQET 356 + L +G D + VV R G + + ++ K + +T Sbjct: 247 FERTFNCTEKVVK--EGDVLHIGMDFNVQ-KMAAVVYVRDGEELYAVGEF--KDLFDT 299 >gi|168467237|ref|ZP_02701079.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195630466|gb|EDX49092.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 539 Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 49/367 (13%), Positives = 106/367 (28%), Gaps = 44/367 (11%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIKGKP--LEHFSQ---- 50 P + + + L + E + + + F WG+ P L++ Sbjct: 12 PDYVQVFEWRMERLQRIRKAPETLPALRQFYRTNPAQFIIDWGMTTDPRNLDYGLPVTIP 71 Query: 51 ----PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 P Q E+++ + + N R +G + + + L Sbjct: 72 FLLFPR--QEEWIDWIIERSRNQENGLTEKS--------REMGLSWTSVGLASALCLFNR 121 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 M I + E + +T+ + ++ F + GW + M ++ Sbjct: 122 EMVIGFGSRKEEYVDSTVDPK-----ALFWKVRKFIATLPAEFRGGWDERKHSRFMSVEF 176 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226 + + + F DEA+ + T I Sbjct: 177 PDTGAVIKGEAGDNIG-----RGDRTTLYFVDEAAFLQRPLLIDAALSQTTRCR----ID 227 Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 S+ +N F + + R+ D ++ + + + E+ Sbjct: 228 LSSVNGMNNPFAQKRH--SGKIPVFTFHWRSDPRKDDEWYRKECEKI-DNPIIVAQELDL 284 Query: 287 QFPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEH 344 + IP +++ A+ + D+A EG DK R G ++ Sbjct: 285 NYQASAEGILIPSEWVQAAVDAHIKLGIQPSGQRLGAMDVADEGRDKNACSLRYGFLLSD 344 Query: 345 IFDWSAK 351 + +WS K Sbjct: 345 VQEWSGK 351 >gi|56697127|ref|YP_167490.1| terminase, large subunit, putative [Ruegeria pomeroyi DSS-3] gi|56678864|gb|AAV95530.1| terminase, large subunit, putative [Ruegeria pomeroyi DSS-3] Length = 408 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 38/291 (13%), Positives = 76/291 (26%), Gaps = 35/291 (12%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134 I GRG GKT A + + + + + Q+++ + S L+ Sbjct: 15 VILGGRGAGKTRAGAEWVRARVEGSRPLDAGRARRVALVGETYDQVRDVMVFGESGILAC 74 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 P ++ G A Sbjct: 75 SPPDRRPNWKASERKL------------------IWPNGAEAQAFSAQDPEGLRGPQFDA 116 Query: 195 VFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252 + DE + + + + T R D+ P + + Sbjct: 117 AWVDELAKWKKAGETWDMLQFALRLGERPQVCVT--TTPRNVKLLKDLLAAPST-VQTHA 173 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + F E + +RY + R E+ G ++ A R + Sbjct: 174 PTEANRANLAESFLEEVRARYAGT-RLGRQELDGVLLADAEGALWTAEMLDRA--RTSSV 230 Query: 313 DLYAPLIMGCDIAGEG---GDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360 +++ D + G GD +V + DW A ++ + +G Sbjct: 231 PELDRVVVALDPSVSGGASGDACGMVVVGAQMQGPPQDWRAWVLADRTVQG 281 >gi|167553969|ref|ZP_02347711.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205321713|gb|EDZ09552.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 539 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 49/367 (13%), Positives = 107/367 (29%), Gaps = 44/367 (11%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIKGKP--LEHFSQ---- 50 P + + + L + E + + + F WG+ P L++ Sbjct: 12 PDYVQVFEWRMERLQRIRKAPETLPALRQFYRTNPAQFIIDWGMTTDPRNLDYGLPVTIP 71 Query: 51 ----PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 P Q E+++ + ++ N R +G + + + L Sbjct: 72 FLLFPR--QEEWIDWIMERSRNHENGLTEKS--------REMGLSWTSVGLASALCLFNR 121 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 M I + E + +T+ + ++ F + GW + M ++ Sbjct: 122 EMVIGFGSRKEEYVDSTVDPK-----ALFWKVRKFIATLPAEFRGGWDERKHSRFMSVEF 176 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226 + + + F DEA+ + T I Sbjct: 177 PDTGAVIKGEAGDNIG-----RGDRTTLYFVDEAAFLQRPLLIDAALSQTTRCR----ID 227 Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 S+ +N F + + R+ D ++ + + + E+ Sbjct: 228 LSSVNGMNNPFAQKRH--SGKIPVFTFHWRSDPRKDDEWYHKECEKI-DNPIIVAQELDL 284 Query: 287 QFPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEH 344 + IP +++ A+ + D+A EG DK R G ++ Sbjct: 285 NYQASTEGILIPSEWVQAAVDAHIKLGIQPSGQRLGAMDVADEGRDKNACSLRYGFLLSD 344 Query: 345 IFDWSAK 351 + +WS K Sbjct: 345 VQEWSGK 351 >gi|291335343|gb|ADD94958.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C148] Length = 234 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 62/178 (34%), Gaps = 11/178 (6%) Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP-DIINK 209 ++ D K + T + + + V DEA+ ++ + Sbjct: 12 KLVPKPWIKTKNETDLKLELVNGSTIELKGTENAMALRGRSLSGVVLDEAAFMDAEVWFE 71 Query: 210 SILGFFTELNPNRFWIMTSNTRRLNGWFYDIF----NIPLEDWKRYQIDTRTVEGIDSGF 265 I + + + S WFYD++ + P +WKR+ T + Sbjct: 72 VIRPALA--DKQGWALFISTPDGTASWFYDLWCYCEDDPTNEWKRWCYTTIEGGNVPQEE 129 Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323 E ++ D R E F + + + ++ ++ +S +A D PL++G D Sbjct: 130 VEAARAQL--DPRTFRQEFEASF--ENLTGLVAISFSDDNISTDAKDISIQPLLLGVD 183 >gi|291337121|gb|ADD96636.1| hypothetical protein Syncc9605_0456 [uncultured organism MedDCM-OCT-S12-C92] Length = 354 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 31/208 (14%), Positives = 69/208 (33%), Gaps = 16/208 (7%) Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP-D 205 + + D + I T + + + V DEA+ + Sbjct: 8 RVLKKLVPKVWIRTKNETDLRIELINGSTIELKGTENAMALRGRSLSGVVLDEAAFMDAE 67 Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF----NIPLEDWKRYQIDTRTVEGI 261 + + I + + + S WFYD++ + +W+R+ T + Sbjct: 68 VWFEVIRPALA--DKEGWALFISTPDGTASWFYDLWCYVPDDETNEWQRWSYTTIDGGNV 125 Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMG 321 E ++ D+ R E F + + + ++ ++ +S EA D PL++G Sbjct: 126 SKHEVEAARAQL--DTRTFRQEFEASF--ENLTGLVAISFSDDNISTEAKDISIQPLLLG 181 Query: 322 CDIAGEGGD-KTVVV-FRRGNIIEHIFD 347 D D + + + G + + Sbjct: 182 VD---FNVDPMSGICAVKNGETLYVFDE 206 >gi|191172603|ref|ZP_03034142.1| gp33 TerL [Escherichia coli F11] gi|190907076|gb|EDV66676.1| gp33 TerL [Escherichia coli F11] gi|324014340|gb|EGB83559.1| hypothetical protein HMPREF9533_01599 [Escherichia coli MS 60-1] Length = 540 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 44/364 (12%), Positives = 93/364 (25%), Gaps = 40/364 (10%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIK--------GKPLEHF 48 P + + L + + E + + K F WG+ G P+ Sbjct: 12 PDYQMVFEWRMERLQRIRQNPEILPALKQFYRTNPAQFIIDWGMTTDPRNIDYGLPVTIP 71 Query: 49 SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108 Q E++ + + N R +G + + L M Sbjct: 72 FLLFPKQEEWIYWIMERWGNRENGITEKS--------REMGLSWTAIGLACSLCLFNKEM 123 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 I + E + ++ + + ++ +A + Sbjct: 124 VIGFGSRKEEYV-DSTGDPKALFWKARKFVETLPVEFRGSWSEKKHAPYMRVEFP----- 177 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 + DEA+ + T I S Sbjct: 178 ----ETGAVIKGEAGDNIGRGDRTTLYLVDEAAFLQRPLLIDAALSQTTRCR----IDLS 229 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 + + F + + R D ++ + + V E+ + Sbjct: 230 SVNGMANPFAQKRHGGK--IPVFTFHWRDDPRKDEEWYRRECEKI-DNPVVVAQELDLNY 286 Query: 289 PQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346 IP +++ A+ + D+A EG DK R G ++E++ Sbjct: 287 SASAEGVLIPSEWVQAAVDAHIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVR 346 Query: 347 DWSA 350 +WS Sbjct: 347 EWSG 350 >gi|330910791|gb|EGH39301.1| phage terminase, large subunit [Escherichia coli AA86] Length = 540 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 40/356 (11%), Positives = 86/356 (24%), Gaps = 24/356 (6%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIKGKPLEHFSQPHRWQL 56 P + + L + + E + + K F WG+ P Sbjct: 12 PDYQMVFEWRMERLQRIRQNPEILPALKQFYRTNPAQFIIDWGMTTDPRNIDYGLPVTIP 71 Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 + + R +G + + L M I + Sbjct: 72 FLLFPKQEEWIHWIMERWGNRENGITEKSREMGLSWTAIGLACSLCLFNKEMVIGFGSRK 131 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 E + ++ + + ++ +A + Sbjct: 132 EEYV-DSTGDPKALFWKARKFVETLPVEFRGSWSEKKHAPYMRVEFP---------ETGA 181 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236 + DEA+ + T I S+ + Sbjct: 182 VIKGEAGDNIGRGDRTTLYLVDEAAFLQRPLLIDAALSQTTRCR----IDLSSVNGMANP 237 Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 F + + R D ++ + + V E+ + Sbjct: 238 FAQKRHGGK--IPVFTFHWRDDPRKDEEWYRRECEKI-DNPVVVAQELDLNYSASAEGVL 294 Query: 297 IPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350 IP +++ A+ + D+A EG DK R G ++E++ +WS Sbjct: 295 IPSEWVQAAVDAHIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSG 350 >gi|49475449|ref|YP_033490.1| terminase large subunit protein [Bartonella henselae str. Houston-1] gi|49475495|ref|YP_033536.1| terminase large subunit protein [Bartonella henselae str. Houston-1] gi|49238255|emb|CAF27468.1| Terminase large subunit protein [Bartonella henselae str. Houston-1] gi|49238301|emb|CAF27516.1| Terminase large subunit protein [Bartonella henselae str. Houston-1] Length = 340 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 31/263 (11%), Positives = 66/263 (25%), Gaps = 30/263 (11%) Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 +I+C + L + E+ + + +Y ID + Sbjct: 16 GTILCARQFQNSLAESSLEEIKRAIE------------GHDFLKDYYKVGESSIKSIDGR 63 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN---PNRFW 224 +S + + + DEA + ++++ E W Sbjct: 64 ----IAFQFSGLDRNIASIKSMGRILLCWVDEAEPVTETAWQTLIPTLREEGEGWRAELW 119 Query: 225 IMTSNTRRLNGWFYDIFNIPLED-WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283 + N R N F + KR +I+ +E + + + Sbjct: 120 VTW-NPLRDNAPVERRFRFSNNEAIKRVEINWSDNPKFPKILNEARLDDLKNRPETYKHI 178 Query: 284 ILGQFPQQEVNNFIPHNYI---EEAMSREAIDDLYAPLIMGCDIAGEG--GDKTVVVFRR 338 G + + + +E D + DI G G D T + + Sbjct: 179 WEGAYLTAIQGAYYQKEMLAAEQEGRIGRVARDPLMQMRAFWDIGGTGAKADATAIWIAQ 238 Query: 339 GNIIEHIFDWSAKLIQETNQEGC 361 + E + Sbjct: 239 ----FVGREIRVLDYYEAQGQPL 257 >gi|85709622|ref|ZP_01040687.1| Phage DNA Packaging Protein [Erythrobacter sp. NAP1] gi|85688332|gb|EAQ28336.1| Phage DNA Packaging Protein [Erythrobacter sp. NAP1] Length = 441 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 38/281 (13%), Positives = 74/281 (26%), Gaps = 32/281 (11%) Query: 66 CHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124 + ++ I AGRG GKT A + + + I +++S + + + Sbjct: 38 IARSAQLPPDGEWRVWLIMAGRGFGKTRAGAEWVRSIAESHSEARIALVSSSLAEARAVM 97 Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184 S L+ P E + Sbjct: 98 VEGESGLLACSPPDRRPEFEPSLRRVR------------------FPNGAEAHLYSAGEP 139 Query: 185 VGPHNTHGMAVFNDEASGTP------DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 + DE P ++L + R I + T R Sbjct: 140 EALRGPQFSHAWCDEVGKWPISHSRATRAWDNLLMGLRLGDDPR--IAVTTTPRAVPLVQ 197 Query: 239 DIFNIPLEDWKRY-QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297 + + T I+ S + R EI G+ + Sbjct: 198 RLLKQETSQATAVTRGSTYDNSANLPARFLEAIADEFAGSQLGRQEIEGELIEDIEGALW 257 Query: 298 PHNYIEEAMSREAIDDLYAPLIMGCDI--AGEGGDKTVVVF 336 + +E++ EA + +++G D + G D+ +V Sbjct: 258 SRSLLEQSKE-EAGPPGFRRIVIGVDPPTSSTG-DECGIVV 296 >gi|300824951|ref|ZP_07105051.1| conserved hypothetical protein [Escherichia coli MS 119-7] gi|300522580|gb|EFK43649.1| conserved hypothetical protein [Escherichia coli MS 119-7] Length = 540 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 44/364 (12%), Positives = 93/364 (25%), Gaps = 40/364 (10%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIK--------GKPLEHF 48 P + + L + + E + + K F WG+ G P+ Sbjct: 12 PDYQMVFEWRMERLQRIRQNPEILPALKQFYRTNPAQFIIDWGMTTDPRNIDYGLPVTIP 71 Query: 49 SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108 Q E++ + + N R +G + + L M Sbjct: 72 FLLFPKQEEWIHWIMERWSNRENGITEKS--------REMGLSWTAIGLACSLCLFNKEM 123 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 I + E + ++ + + ++ +A + Sbjct: 124 VIGFGSRKEEYV-DSTGDPKALFWKARKFVETLPVEFRGSWSEKKHAPYMRVEFP----- 177 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 + DEA+ + T I S Sbjct: 178 ----ETGAVIKGEAGDNIGRGDRTTLYLVDEAAFLQRPLLIDAALSQTTRCR----IDLS 229 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 + + F + + R D ++ + + V E+ + Sbjct: 230 SVNGMANPFAQKRHGGK--IPVFTFHWRDDPRKDEEWYRRECEKI-DNPVVVAQELDLNY 286 Query: 289 PQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346 IP +++ A+ + D+A EG DK R G ++E++ Sbjct: 287 SASAEGVLIPSEWVQAAVDAHIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVR 346 Query: 347 DWSA 350 +WS Sbjct: 347 EWSG 350 >gi|169633984|ref|YP_001707720.1| putative bacteriophage protein; putative prophage terminase large subunit [Acinetobacter baumannii SDF] gi|169152776|emb|CAP01795.1| putative bacteriophage protein; putative prophage terminase large subunit [Acinetobacter baumannii] Length = 552 Score = 81.1 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 46/299 (15%), Positives = 92/299 (30%), Gaps = 41/299 (13%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN-----TLWAEVSKWLSMLP 136 I R G + + L G + + E + TL+ + S +P Sbjct: 107 IEKSRDEGMSYVVLGFFLHRWLFVEGFAGGVGSRKEELVDKKGDPKTLFHKFRDMFSKMP 166 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 L P G+ ++ + M I + T + + F Sbjct: 167 QW---------LKPKGFVEKVHDNYMRIINPDNGATITGEAGDNIG-----RGGRTTMYF 212 Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256 DE + +++ ++ I S + F+ + + + R Sbjct: 213 LDEWAFV--EQQEAVDAAISQNTN--VHIKGSTPNGIGDRFHQD--RFSGRYAVFTMPWR 266 Query: 257 TVEG----------IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306 + ++E ++ D V E+ + IP +++ A+ Sbjct: 267 DNPDKNWTVTYNGKVIYPWYEKQLATL--DDVVLAQEVDINYAASVEGVLIPSTWVQAAI 324 Query: 307 S--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK--LIQETNQEGC 361 ++ + I G D+A EG DK R G ++ ++ WS K I T Q+ Sbjct: 325 DAHKKLQIEPTGDRIGGLDVADEGKDKNSFAARHGVVMTYLATWSGKGDDIFGTTQKAM 383 >gi|318064508|gb|ADV36483.1| phage terminase large subunit [Edwardsiella phage eiDWF] gi|318064606|gb|ADV36532.1| phage terminase large subunit [Edwardsiella phage eiMSLS] Length = 460 Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 41/318 (12%), Positives = 96/318 (30%), Gaps = 36/318 (11%) Query: 43 KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102 P++ + W+++ + H +N++ I + +G G GKT A + L Sbjct: 26 APVKKERKSRTWRIKTL----PHQRGLINDTTTKI--LGLCSGFGGGKTWSAARKAVQLA 79 Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162 PG I + L ++ E+ K L+ + F Q H Sbjct: 80 ILNPGCDGIITEPTIPLLVKIMYPELEKALNEAGIKWKFNKQDKIYHCRIAG-------- 131 Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG----TPDIINKSILGFFTEL 218 + + + + DE + +LG Sbjct: 132 ---------QMTRIICDSMENYTRLIGVNAAWCVCDEFDTTKPDIAMEAYRKLLGRLRTG 182 Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278 N + ++ S + + + + + T + + + + ++Y + Sbjct: 183 NVRQ-MVIVSTPEGFRAMYQIFISEADDQKRLIKARTTDNHYLPQDYIDTLRAQY--PPE 239 Query: 279 VARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF-R 337 + + G+F N+ + + + + L++G D G V R Sbjct: 240 LIEAYLNGEFVNLTGGAVY-RNFSRTLNNCDTVAEDDDTLMIGMDF-NVGQMAGAVYVQR 297 Query: 338 RGNIIEH---IFDWSAKL 352 + +E + ++ L Sbjct: 298 IADGVEEMHLVDEFCGLL 315 >gi|318064394|gb|ADV36428.1| phage terminase large subunit [Edwardsiella phage eiAU] Length = 460 Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 41/318 (12%), Positives = 96/318 (30%), Gaps = 36/318 (11%) Query: 43 KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102 P++ + W+++ + H +N++ I + +G G GKT A + L Sbjct: 26 APVKKERKSRTWRIKTL----PHQRGLINDTTTKI--LGLCSGFGGGKTWSAARKAVQLA 79 Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162 PG I + L ++ E+ K L+ + F Q H Sbjct: 80 ILNPGCDGIITEPTIPLLVKIMYPELEKALNEAGIKWKFNKQDKIYHCRIAG-------- 131 Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG----TPDIINKSILGFFTEL 218 + + + + DE + +LG Sbjct: 132 ---------QMTRIICDSMENYTRLIGVNAAWCVCDEFDTTKPDIAMEAYRKLLGRLRTG 182 Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278 N + ++ S + + + + + T + + + + ++Y + Sbjct: 183 NVRQ-MVIVSTPEGFRAMYQIFISEADDQKRLIKARTTDNHYLPQDYIDTLRAQY--PPE 239 Query: 279 VARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF-R 337 + + G+F N+ + + + + L++G D G V R Sbjct: 240 LIEAYLNGEFVNLTGGAVY-RNFSRTLNNCDTVAEDDDTLMIGMDF-NVGQMAGAVYVQR 297 Query: 338 RGNIIEH---IFDWSAKL 352 + +E + ++ L Sbjct: 298 IADGVEEMHLVDEFCGLL 315 >gi|163736656|ref|ZP_02144075.1| hypothetical protein RGBS107_16031 [Phaeobacter gallaeciensis BS107] gi|161390526|gb|EDQ14876.1| hypothetical protein RGBS107_16031 [Phaeobacter gallaeciensis BS107] Length = 430 Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 43/292 (14%), Positives = 79/292 (27%), Gaps = 35/292 (11%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134 I GRG GKT A + L I + + Q+++ + S L+ Sbjct: 37 VILGGRGAGKTRAGAEWVRTLAEGATPLSAGRARRIALLGETYDQVRDVMVQGDSGLLAC 96 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 P ++ T A Sbjct: 97 TPRDRRPTWKATERRL------------------IWPNGATAQAFSAHDPEALRGPQFDA 138 Query: 195 VFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252 + DE + + + R + T R G D+ P + + Sbjct: 139 AWADELAKWKRGQDSWDMLQFALRLGDDPRVCVT--TTPRNVGVLRDLLASPST-VQTHA 195 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + + F + +RY S + R E+ G Q + + A A Sbjct: 196 ATEANRANLAASFIAEVRNRYAG-SRLGRQELDGILLQDVEGALWTNAGLVAAQI--AKA 252 Query: 313 DLYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC 361 +++ D AG+ D +V + DW A ++ + +G Sbjct: 253 PTLDRVVVAVDPAVSAGKRSDACGIVVVGATLQGPPQDWCAYVLADCTVQGV 304 >gi|254160843|ref|YP_003043951.1| hypothetical protein ECB_00733 [Escherichia coli B str. REL606] gi|253972744|gb|ACT38415.1| conserved hypothetical protein [Escherichia coli B str. REL606] Length = 540 Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 40/356 (11%), Positives = 86/356 (24%), Gaps = 24/356 (6%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIKGKPLEHFSQPHRWQL 56 P + + L + + E + + K F WG+ P Sbjct: 12 PDYQMVFEWRMERLQRIRQNPEILPALKQFYRTNPAQFIIDWGMTTDPRNIDYGLPVTIP 71 Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 + + R +G + + L M I + Sbjct: 72 FLLFPKQEEWIHWIMERWGNRENGITEKSREMGLSWTAIGLACSLCLFNKEMVIGFGSRK 131 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 E + ++ + + ++ +A + Sbjct: 132 EEYV-DSTGDPKALFWKARKFVETLPVEFRGSWSEKKHAPYMRVEFP---------ETGA 181 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236 + DEA+ + T I S+ + Sbjct: 182 VIKGEAGDNIGRGDRTTLYLVDEAAFLQRPLLIDAALSQTTRCR----IDLSSVNGMANP 237 Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 F + + R D ++ + + V E+ + Sbjct: 238 FAQKRHGGK--IPVFTFHWRDDPRKDEEWYRRECEKI-DNPVVVAQELDLNYSASAEGVL 294 Query: 297 IPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350 IP +++ A+ + D+A EG DK R G ++E++ +WS Sbjct: 295 IPSEWVQAAVDAHIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSG 350 >gi|159897093|ref|YP_001543340.1| hypothetical protein Haur_0564 [Herpetosiphon aurantiacus ATCC 23779] gi|159890132|gb|ABX03212.1| hypothetical protein Haur_0564 [Herpetosiphon aurantiacus ATCC 23779] Length = 477 Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 39/301 (12%), Positives = 76/301 (25%), Gaps = 60/301 (19%) Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 R +G + L LWL +PG ++ + + + L V + LP Sbjct: 64 RQLGISWLCCAYALWLCLFQPGKVVLIFSKGQGEADEMLHR-VKRLYERLPDWMREA--- 119 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG--T 203 S + + + P T + V DEA Sbjct: 120 -----SPALVTDNTTELEWANGSRVKS-------LPATKGAGRSFTASLVILDEAGFLIW 167 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI---PLEDWKRYQIDTRTVEG 260 + ++ I+ S + F+ ++ +K + Sbjct: 168 AKQLYTALKPTIDGGGQ---LIVLSTANGIGNLFHQLWVKALSAKNRFKTIFLPWWARPT 224 Query: 261 IDSGFHEGIISRYGLDSDVARIEI---------------------------LGQFPQQEV 293 D+ +++ + Y D D+ R E G + Sbjct: 225 RDAQWYQEQLEEY-TDLDMVRQEYPSTAQEAFLVSGRTRFKMPWLLQQTPSDGLAAESLP 283 Query: 294 NNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEG---GDKTVVVFRRGNIIEHIFDWSA 350 + + + + I+ D+A EG GD E + Sbjct: 284 DALDKLDGVTM----YQLPQQGRRYILAADVA-EGLEHGDFCAATLIDAVSWEEMVSVHG 338 Query: 351 K 351 K Sbjct: 339 K 339 >gi|296160121|ref|ZP_06842940.1| phage terminase, large subunit, PBSX family [Burkholderia sp. Ch1-1] gi|295889595|gb|EFG69394.1| phage terminase, large subunit, PBSX family [Burkholderia sp. Ch1-1] Length = 494 Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 87/301 (28%), Gaps = 42/301 (13%) Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 P K + GRG KT ++ S R ++C+ + ++ + AE+S+ + Sbjct: 68 PKRLKI-VYGGRGSAKTRSVVSILTAQASARRE-RVLCLREIQNSIEESSHAELSEEIER 125 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 F + + T + ++ + T Sbjct: 126 RDLSGSFVVGKKIIRV-----------------PATRSSFSFRGLYRNQRGIKGFTKASK 168 Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL--------- 245 + DEA G + ++ E + +T N + + + P Sbjct: 169 AWVDEADGVSRDSWEILMPTIREKGSEVW--VTFNPNKAHDPTWTDLIGPYEHLLDDGGC 226 Query: 246 ---EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302 +D + + +D D LGQF ++ + Sbjct: 227 YEDDDVLIIRANYTDNPWFTEELELERAKMERVDKDRYNWIWLGQFNKRSNELIFAGKWR 286 Query: 303 EEAMSREAIDDLYAPLIMGCDIAGEGGDKTVV--VFRRGNIIEHIFDWSAKLIQETNQEG 360 EA A + G D T + F +GN + D+ A +++ +G Sbjct: 287 TEAFETPANVRFFFGADWG-----FAQDPTTLNRSFVKGNTLFV--DYEANSLRQNAGKG 339 Query: 361 C 361 Sbjct: 340 V 340 >gi|291283815|ref|YP_003500633.1| hypothetical protein G2583_3121 [Escherichia coli O55:H7 str. CB9615] gi|290763688|gb|ADD57649.1| hypothetical protein G2583_3121 [Escherichia coli O55:H7 str. CB9615] Length = 540 Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 40/356 (11%), Positives = 86/356 (24%), Gaps = 24/356 (6%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIKGKPLEHFSQPHRWQL 56 P + + L + + E + + K F WG+ P Sbjct: 12 PDYQMVFEWRMERLQRIRQNPEILPALKQFYRTNPAQFIIDWGMTTDPRNIDYGLPVTIP 71 Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 + + R +G + + L M I + Sbjct: 72 FLLFPKQEEWIHWIMERWGNRENGITEKSREMGLSWTAIGLACSLCLFNKEMVIGFGSRK 131 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 E + ++ + + ++ +A + Sbjct: 132 EEYV-DSTGDPKALFWKARKFVETLPVEFRGSWSEKKHAPYMRVEFP---------ETGA 181 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236 + DEA+ + T I S+ + Sbjct: 182 VIKGEAGDNIGRGDRTTLYLVDEAAFLQRPLLIDAALSQTTRCR----IDLSSVNGMANP 237 Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 F + + R D ++ + + V E+ + Sbjct: 238 FAQKRHGGK--IPVFTFHWRDDPRKDEEWYRRECEKI-DNPVVVAQELDLNYSASAEGVL 294 Query: 297 IPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350 IP +++ A+ + D+A EG DK R G ++E++ +WS Sbjct: 295 IPSEWVQAAVDAHIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSG 350 >gi|78212008|ref|YP_380787.1| hypothetical protein Syncc9605_0456 [Synechococcus sp. CC9605] gi|78196467|gb|ABB34232.1| conserved hypothetical protein [Synechococcus sp. CC9605] Length = 414 Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 34/250 (13%), Positives = 70/250 (28%), Gaps = 31/250 (12%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 +++GR GKT + +L G + +A + Q K W ++ + + Sbjct: 24 VVNSGRRFGKTRMALTWLLEGALLTSGSRMWFLAPTRVQAKQIAWRDLKEMVPGSWASQV 83 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 E + + + + D DE Sbjct: 84 RESTLT---------------IELRNGSHIQLA------GADYADSLRGQRADRFAIDEY 122 Query: 201 SGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP--LEDWKRYQIDTR 256 D + ++ L + + I +S + +++ E W R+ + Sbjct: 123 CYIRDLQEMWQAALLPMLGTSDDGSVIFSSTPAGGGTFSAELWERAETAEGWARWNFPSV 182 Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA 316 + + E D + R E G + + P + D Sbjct: 183 AGGWVKPEYVEQARQTM--DPSLWRQEFFGS-IESLLGAVYPAF---NQQNISDTVDNGG 236 Query: 317 PLIMGCDIAG 326 PL++GCD Sbjct: 237 PLLVGCDFNR 246 >gi|84503393|ref|ZP_01001462.1| Putative large terminase [Oceanicola batsensis HTCC2597] gi|84388303|gb|EAQ01254.1| Putative large terminase [Oceanicola batsensis HTCC2597] Length = 460 Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 33/267 (12%), Positives = 62/267 (23%), Gaps = 35/267 (13%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134 I GRG GKT A + + I + + Q++ + S ++ Sbjct: 67 VILGGRGAGKTRAGAEWVRAQVEGDRPLDKGRCKRIALVGETIDQVREVMIFGDSGIMAC 126 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 P E ++ G Sbjct: 127 SPPDRRPEWEATRKRL------------------VWPNGAVAYAFSAHEPEGLRGPQFDG 168 Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252 + DE + + R + T R G D+ + + Sbjct: 169 AWADELGKWRRGRDSWDMLQFALRLGDAPRVCVT--TTPRNVGVLKDLLEMDST-VTTHA 225 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + F + +RY + R E+ G +E R Sbjct: 226 PTEANRANLADSFLAEVRARYAGTG-LGRQELDGVMLDAAEGALWTPAMLEAG--RVEAP 282 Query: 313 DLYAPLIMGCDI---AGEGGDKTVVVF 336 +++ D G D+ +V Sbjct: 283 PDLDRIVVAVDPPVTGHAGSDECGIVV 309 >gi|218555117|ref|YP_002388030.1| hypothetical protein ECIAI1_2647 [Escherichia coli IAI1] gi|218361885|emb|CAQ99485.1| conserved hypothetical protein from bacteriophage origin [Escherichia coli IAI1] Length = 540 Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 32/267 (11%), Positives = 69/267 (25%), Gaps = 19/267 (7%) Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 R +G + + L M I + E + ++ + + ++ Sbjct: 101 REMGLSWTAIGLACSLCLFNKEMVIGFGSRKEEYV-DSTGDPKALFWKARKFVETLPVEF 159 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 +A + + DEA+ Sbjct: 160 RGSWSEKKHAPYMRVEFP---------ETGAVIKGEAGDNIGRGDRTTLYLVDEAAFLQR 210 Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265 + T I S+ + F + + R D + Sbjct: 211 PLLIDAALSQTTRCR----IDLSSVNGMANPFAQKRHGGK--IPVFTFHWRDDPRKDEEW 264 Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCD 323 + + + V E+ + IP +++ A+ + D Sbjct: 265 YRRECEKI-DNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDAHIKLGIQPTGKRLGAMD 323 Query: 324 IAGEGGDKTVVVFRRGNIIEHIFDWSA 350 +A EG DK R G ++E++ +WS Sbjct: 324 VADEGRDKNAFSTRHGFLMENVREWSG 350 >gi|302339289|ref|YP_003804495.1| hypothetical protein Spirs_2798 [Spirochaeta smaragdinae DSM 11293] gi|301636474|gb|ADK81901.1| conserved hypothetical protein [Spirochaeta smaragdinae DSM 11293] Length = 295 Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 39/292 (13%), Positives = 88/292 (30%), Gaps = 61/292 (20%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P WQ ++ ++ + ++ R GK+T+ A G I Sbjct: 33 PFLWQDWALDQ--------------SLRRLLLNCCRQAGKSTVIAAKAAHKAKFFSGSLI 78 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 I ++ + Q K + +V ++++ E + + ++ Sbjct: 79 ILVSPALRQSKELM-RKVEDFIALDKSFP------------PASEEDNQLTKEFKNRSRI 125 Query: 171 ITCRTYSEERPDTFVGPHN-THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 + P + + + DEAS PD + K+I + ++ + Sbjct: 126 VA-------LPGSEKTIRGLSGPTLIIIDEASRIPDELYKAIRPMMAGADTEL--VLMTT 176 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTV-EGIDSGFHEGIISRYGL------------- 275 G FYD ++ + W + ++ R + + + R Sbjct: 177 PFGKRGVFYDAWSR-SKRWTKIEVVGRDILGRFPNEQVYAQLRRKDGIKACYSPRHSVEF 235 Query: 276 --------DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319 R E G+F ++ + A+ + +AP+I Sbjct: 236 LGEELEEMGEWWYRQEYGGEFMDPI-DSVFNMEDVRAAIINDTPAISFAPII 286 >gi|281416211|ref|YP_003347946.1| DNA packaging/maturation protein B [Vibrio phage N4] gi|237701518|gb|ACR16511.1| DNA packaging/maturation protein B [Vibrio phage N4] Length = 572 Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 47/382 (12%), Positives = 88/382 (23%), Gaps = 91/382 (23%) Query: 24 CVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS 83 F F+M W P +P R Q + + + + Sbjct: 1 MKNDFVLFLMVL--WRALNLP-----EPTRCQKDMARKLAAGDER----------RFILQ 43 Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 A RGIGK+ + ++W + P + + ++ S+ + + + + +LP H + Sbjct: 44 AFRGIGKSFITCAFVVWKLWNNPQLKFMIVSASKERADANSIF-IKRIIDLLPFLHELKP 102 Query: 144 QSLSLHPSGWYAELL-EQSMGIDSKHYTITCRTY----------SEERPDTFVGPHNTHG 192 + + L + K IT + E P+ Sbjct: 103 RPEQRDSVISFDVGLAKPDHSPSVKSVGITGQLTGSRADILIADDVEVPNNSATQAARDR 162 Query: 193 MAVFNDEASGT------------PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240 + E P W + +N Sbjct: 163 LGELVKEFDAILKPNGTIIYLGTPQCEMTLYRELENRGYKTTIWPARY-PKDMNDLETYG 221 Query: 241 FNIPL-------EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293 + E+ + Y D YG + + P Sbjct: 222 NRLAPMLKDELMENPEAYWWQPTDPVRFDDEDLRERELSYGKAGFALQFML---NPNLSD 278 Query: 294 NNFIP---HNYIEEAMSREAID------------------------------------DL 314 P ++I A+ + Sbjct: 279 AEKYPLKLRDFIVAALEVDKAPLTYGWLPNPQNLLQNVPQVGLKGDTYHRYDVADKRQAS 338 Query: 315 YAPLIMGCDIAGEGGDKTVVVF 336 Y IM D +G G D+T Sbjct: 339 YTSKIMAIDPSGRGKDETGYCV 360 >gi|68299748|ref|YP_249597.1| DNA packaging protein B [Vibriophage VP4] gi|66473287|gb|AAY46296.1| DNA packaging protein B [Vibriophage VP4] Length = 586 Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 47/382 (12%), Positives = 88/382 (23%), Gaps = 91/382 (23%) Query: 24 CVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS 83 F F+M W P +P R Q + + + + Sbjct: 15 MKNDFVLFLMVL--WRALNLP-----EPTRCQKDMARKLAAGDER----------RFILQ 57 Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 A RGIGK+ + ++W + P + + ++ S+ + + + + +LP H + Sbjct: 58 AFRGIGKSFITCAFVVWKLWNNPQLKFMIVSASKERADANSIF-IKRIIDLLPFLHELKP 116 Query: 144 QSLSLHPSGWYAELL-EQSMGIDSKHYTITCRTY----------SEERPDTFVGPHNTHG 192 + + L + K IT + E P+ Sbjct: 117 RPEQRDSVISFDVGLAKPDHSPSVKSVGITGQLTGSRADILIADDVEVPNNSATQAARDR 176 Query: 193 MAVFNDEASGT------------PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240 + E P W + +N Sbjct: 177 LGELVKEFDAILKPNGTIIYLGTPQCEMTLYRELENRGYKTTIWPARY-PKDMNDLETYG 235 Query: 241 FNIPL-------EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293 + E+ + Y D YG + + P Sbjct: 236 NRLAPMLKDELMENPEAYWWQPTDPVRFDDEDLRERELSYGKAGFALQFML---NPNLSD 292 Query: 294 NNFIP---HNYIEEAMSREAID------------------------------------DL 314 P ++I A+ + Sbjct: 293 AEKYPLKLRDFIVAALEVDKAPLTYGWLPNPQNLLQNVPQVGLKGDTYHRYDVADKRQAS 352 Query: 315 YAPLIMGCDIAGEGGDKTVVVF 336 Y IM D +G G D+T Sbjct: 353 YTSKIMAIDPSGRGKDETGYCV 374 >gi|291334534|gb|ADD94186.1| hypothetical protein Syncc9605_0456 [uncultured phage MedDCM-OCT-S04-C1220] gi|291335526|gb|ADD95137.1| hypothetical protein Syncc9605_0456 [uncultured phage MedDCM-OCT-S04-C491] gi|291335665|gb|ADD95272.1| hypothetical protein Syncc9605_0456 [uncultured phage MedDCM-OCT-S04-C846] Length = 354 Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 70/208 (33%), Gaps = 16/208 (7%) Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP-D 205 + + D + I T + + + V DEA+ + Sbjct: 8 RVLKKLVPKVWIRTKNETDLRIELINGSTIELKGTENAMALRGRSLSGVVLDEAAFMDAE 67 Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF----NIPLEDWKRYQIDTRTVEGI 261 + + I + + + S WFYD++ + +W+R+ T + Sbjct: 68 VWFEVIRPALA--DKEGWALFISTPDGTASWFYDLWCYVPDDETNEWQRWSYTTIDGGNV 125 Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMG 321 E ++ D+ R E F + + + ++ +E +S+EA D PL++G Sbjct: 126 SKHEVEAARAQL--DTRTFRQEFEASF--ENLTGLVAISFSDENISQEAKDISIQPLLLG 181 Query: 322 CDIAGEGGD-KTVVV-FRRGNIIEHIFD 347 D D + + + G + + Sbjct: 182 VD---FNVDPMSGICAVKNGETLYVFDE 206 >gi|254776419|ref|ZP_05217935.1| phage terminase [Mycobacterium avium subsp. avium ATCC 25291] Length = 491 Score = 80.8 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 41/329 (12%), Positives = 86/329 (26%), Gaps = 53/329 (16%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 WQ+ + + AI RG+GKT + A + L+ + P + I Sbjct: 51 RPWQMGMLRPFLDPDPRPLVG--------AIMGPRGLGKTGIFAALGLYELFCGPDGNEI 102 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 I + ++ L ++ + + A + + + K T+ Sbjct: 103 PIVAVDERMAGRLLKPAAQMVELN-------------DELAARAVVYRDRIEVPGKRSTL 149 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI------------LGFFTELN 219 T +R + DE ++ LG T N Sbjct: 150 TALPAEAKRIEGLGTW-----TLALADELGEIDPDTWSTLLLGAGKLDGAMALGIGTPPN 204 Query: 220 PNRFWIM------TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISR- 272 + +N FY+ E + + Sbjct: 205 RETSVLTDLREACRANPDDRTMAFYEFSADGFEHHPVSCVHCLELANPQLDDLLSRDRAT 264 Query: 273 ---YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329 R + L Q + F+ + + + + D A +++ D + + Sbjct: 265 ALLKQTTEGEYRRKRLCQVVTTNESPFVDADTWDGLKAPHPVPD-GADVVIALDGSLK-D 322 Query: 330 DKTVVVFRRGNIIEHIFDWSAKLIQETNQ 358 D T +V + + + E Sbjct: 323 DSTALVV---GTVGKVPHFDRLDAWENPG 348 >gi|218296727|ref|ZP_03497433.1| protein of unknown function DUF264 [Thermus aquaticus Y51MC23] gi|218242816|gb|EED09350.1| protein of unknown function DUF264 [Thermus aquaticus Y51MC23] Length = 425 Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 45/273 (16%), Positives = 88/273 (32%), Gaps = 25/273 (9%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 + FK + + R GK+ G + + ++ E Q + AE +K Sbjct: 17 SRFKIGLWS-RQTGKSFALTLEAALHAVEHRGSTWVLLSAGERQSREL--AEKAKAHLDA 73 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 + M+S + + + + + I P + V Sbjct: 74 MKQVGTLMESRFF---EGGESVTQLEIRLPNLSRLIF-------LPANPRTARG-YTGNV 122 Query: 196 FNDEASG--TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253 DE + + I ++ T P+ + S G F++++ W R+++ Sbjct: 123 VLDEFAFHQDSEAIWAAMYPIIT-RRPDLKIRVMSTPNGPRGKFWELWEKGGPAWSRHKV 181 Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA--- 310 + D + + E L +F F+P + I EA +RE Sbjct: 182 TIYDAVAQGLPVDPEELRAGLADDFIWQQEYLCEFL-SAEEAFLPWSLILEAEAREDPRG 240 Query: 311 IDDLYAPLIMGCDIAGEGGDKTVVVF--RRGNI 341 + +G D+ D TV V R G++ Sbjct: 241 PWNPDQAY-LGVDVGRH-RDLTVFVVLERVGDV 271 >gi|89054122|ref|YP_509573.1| hypothetical protein Jann_1631 [Jannaschia sp. CCS1] gi|88863671|gb|ABD54548.1| protein of unknown function DUF264 [Jannaschia sp. CCS1] Length = 483 Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 32/267 (11%), Positives = 61/267 (22%), Gaps = 35/267 (13%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134 + GRG GKT A + ++ + I + Q + S ++ Sbjct: 90 VVLGGRGAGKTRAGAEWVRSMVEGATPEAPGRAKRVALIGETYDQAMAVMVKGESGLIAC 149 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 P + + Sbjct: 150 SPPDRVPRWIAGERKL------------------VWPNGAEAQVFSANDPEALRGPQFDL 191 Query: 195 VFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252 + DE + P + + + T R D+ + + Sbjct: 192 AWADELAKWPKAQETWDMLQFGLRLGQHP--QQIVTTTPRNVNVLKDL--LARDGVAHTH 247 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 T + + D+ + R E+ G N I+E +A D Sbjct: 248 APTEANSAYLADSFLTEVRSRYGDTRLGRQELDGVLLDDVDNALWVRGAIDEGRLTDAPD 307 Query: 313 DLYAPLIMGCDI---AGEGGDKTVVVF 336 +I+ D G D +V Sbjct: 308 V--TRVIVAVDPPVTGHAGSDACGIVV 332 >gi|313499430|gb|ADR60796.1| P-loop protein [Pseudomonas putida BIRD-1] Length = 374 Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 35/293 (11%), Positives = 68/293 (23%), Gaps = 48/293 (16%) Query: 77 IFKCAISAGRGIGKTTL-------NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129 F+ A+ GR GKT L A + + I A + Q K W + Sbjct: 33 RFRDAVC-GRRFGKTFLGKAEMRRAARLAAEWGVSVEDE-IWYGAPTFKQAKRVFWRRLK 90 Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189 + + S+ + D + Sbjct: 91 QAIPEAWRAARPNETECSITLK--------------------SGHIMRVVGLDNYDNLRG 130 Query: 190 THGMAVFNDEASGTPDIIN-KSILGFF---------TELNPNRFWIMTSNTRRLNGWFYD 239 + V DE + + + T + + T + YD Sbjct: 131 SGLFFVLVDEWADCSWAAWEEVLRPMLSTCQYTIPQTGESRKGGHALRIGTPKGFNHCYD 190 Query: 240 IFNIPL----EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN 295 + D K +Q + + + + + D R E F + Sbjct: 191 TYRDGQPGGEPDHKSWQYTSLQGGNVPAVELDAARRKM--DPRTFRQEYEAGF-ENYAGV 247 Query: 296 FIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348 + + +G D VV R + + ++ Sbjct: 248 VYS-TFDRAECHTSERIKPGEAIHIGMDFNVM-KMAAVVYVVRDGLPLALDEF 298 >gi|323512078|gb|ADX87539.1| DNA packaging protein B [Vibrio phage ICP3_2009_B] gi|323512127|gb|ADX87587.1| DNA packaging protein B [Vibrio phage ICP3_2009_A] gi|323512176|gb|ADX87635.1| DNA packaging protein B [Vibrio phage ICP3_2008_A] gi|323512224|gb|ADX87682.1| DNA packaging protein B [Vibrio phage ICP3_2007_A] Length = 572 Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 47/382 (12%), Positives = 88/382 (23%), Gaps = 91/382 (23%) Query: 24 CVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS 83 F F+M W P +P R Q + + + + Sbjct: 1 MKNDFVLFLMVL--WRALNLP-----EPTRCQKDMARKLAAGDER----------RFILQ 43 Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 A RGIGK+ + ++W + P + + ++ S+ + + + + +LP H + Sbjct: 44 AFRGIGKSFITCAFVVWKLWNNPQLKFMIVSASKERADANSIF-IKRIIDLLPFLHELKP 102 Query: 144 QSLSLHPSGWYAELL-EQSMGIDSKHYTITCRTY----------SEERPDTFVGPHNTHG 192 + + L + K IT + E P+ Sbjct: 103 RPEQRDSVISFDVGLAKPDHSPSVKSVGITGQLTGSRADILIADDVEVPNNSATQAARDR 162 Query: 193 MAVFNDEASGT------------PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240 + E P W + +N Sbjct: 163 LGELVKEFDAILKPNGTIIYLGTPQCEMTLYRELENRGYKTTIWPARY-PKDMNDLESYG 221 Query: 241 FNIPL-------EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293 + E+ + Y D YG + + P Sbjct: 222 NRLAPMLKDELMENPEAYWWQPTDPVRFDDEDLRERELSYGKAGFALQFML---NPNLSD 278 Query: 294 NNFIP---HNYIEEAMSREAID------------------------------------DL 314 P ++I A+ + Sbjct: 279 AEKYPLKLRDFIVAALEVDKAPLTYGWLPNPQNLLQNVPQVGLKGDTYHRYDVADKRQSS 338 Query: 315 YAPLIMGCDIAGEGGDKTVVVF 336 Y IM D +G G D+T Sbjct: 339 YTSKIMTIDPSGRGKDETGYCV 360 >gi|325171325|ref|YP_004251296.1| DNA packaging protein B [Vibrio phage ICP3] gi|323512031|gb|ADX87493.1| DNA packaging protein B [Vibrio phage ICP3] Length = 586 Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 47/382 (12%), Positives = 88/382 (23%), Gaps = 91/382 (23%) Query: 24 CVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS 83 F F+M W P +P R Q + + + + Sbjct: 15 MKNDFVLFLMVL--WRALNLP-----EPTRCQKDMARKLAAGDER----------RFILQ 57 Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 A RGIGK+ + ++W + P + + ++ S+ + + + + +LP H + Sbjct: 58 AFRGIGKSFITCAFVVWKLWNNPQLKFMIVSASKERADANSIF-IKRIIDLLPFLHELKP 116 Query: 144 QSLSLHPSGWYAELL-EQSMGIDSKHYTITCRTY----------SEERPDTFVGPHNTHG 192 + + L + K IT + E P+ Sbjct: 117 RPEQRDSVISFDVGLAKPDHSPSVKSVGITGQLTGSRADILIADDVEVPNNSATQAARDR 176 Query: 193 MAVFNDEASGT------------PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240 + E P W + +N Sbjct: 177 LGELVKEFDAILKPNGTIIYLGTPQCEMTLYRELENRGYKTTIWPARY-PKDMNDLESYG 235 Query: 241 FNIPL-------EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293 + E+ + Y D YG + + P Sbjct: 236 NRLAPMLKDELMENPEAYWWQPTDPVRFDDEDLRERELSYGKAGFALQFML---NPNLSD 292 Query: 294 NNFIP---HNYIEEAMSREAID------------------------------------DL 314 P ++I A+ + Sbjct: 293 AEKYPLKLRDFIVAALEVDKAPLTYGWLPNPQNLLQNVPQVGLKGDTYHRYDVADKRQSS 352 Query: 315 YAPLIMGCDIAGEGGDKTVVVF 336 Y IM D +G G D+T Sbjct: 353 YTSKIMTIDPSGRGKDETGYCV 374 >gi|297569231|ref|YP_003690575.1| hypothetical protein DaAHT2_1260 [Desulfurivibrio alkaliphilus AHT2] gi|296925146|gb|ADH85956.1| conserved hypothetical protein [Desulfurivibrio alkaliphilus AHT2] Length = 465 Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 47/345 (13%), Positives = 83/345 (24%), Gaps = 49/345 (14%) Query: 23 ECVLSFKNFVMRFF--PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKC 80 + F F W L Q + + C + + Sbjct: 5 QAAQDPALFARWFKQGDWSAWFAFLSAVFGLEMNQEQ--RRIFETCTGRQKAPESPVKEA 62 Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGM---------SIICIANSETQLKNTLWAEVSKW 131 + GR GK+ A + ++L + +++ +A Q + Sbjct: 63 WLVVGRRGGKSFTTALIAVYLAAFHDYRQFLQPGERGTVLILAADRKQARTIF------- 115 Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191 + L + E +I T S + Sbjct: 116 -------RYARAMVLEIPMLAGLLERETADGLELKNSVSIEIATAS------YRATRGYT 162 Query: 192 GMAVFNDEASGT-------PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-- 242 +A DE + I +I PN ++ S+ G Y + Sbjct: 163 VVAALLDEIAFWFTDGANPDHEIVNAIQPGMAT-IPNAMMLVLSSPYAKQGELYRAYRES 221 Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302 +D + T S I Y D A E GQF F+ + Sbjct: 222 FGADDPEVLVWQADTKTMNPSVPDRIIQRAYDRDPAAAAAEYGGQFRDDLE-QFVSREVV 280 Query: 303 EEAMS---REAIDDLYAPLIMGCDIAGEGGDKTVVVF--RRGNII 342 + E D +G D + R G+ + Sbjct: 281 DSCTREEPTELPPISSNRYYGFTDPSGGSADSMTLAISHREGDRV 325 >gi|158337379|ref|YP_001518554.1| hypothetical protein AM1_4258 [Acaryochloris marina MBIC11017] gi|158307620|gb|ABW29237.1| conserved domain protein [Acaryochloris marina MBIC11017] Length = 476 Score = 80.4 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 48/345 (13%), Positives = 98/345 (28%), Gaps = 61/345 (17%) Query: 38 WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS-AGRGIGKTTLNAW 96 W G L+ F WQ + ++ ++ S K ++ GR +G + L Sbjct: 41 WIKSGGSLKQFILWD-WQKDVVDWIEEPQ------SLSDSPKLSVIIKGRQLGLSQLCCS 93 Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156 L+ + I+ +++ S L EM S + Sbjct: 94 WFLYKAWQNSAWVGVIISRTQSD-------------SSLLASRMREMASTAGLVDFSTDS 140 Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN-THGMAVFNDEASGTPDI--INKSILG 213 LL+ + + + + DEA+ ++ + Sbjct: 141 LLKLEISGGGTLHFRSA---------AVDAVRGIDSVSGILFDEAAFQTNLKLSLSAATP 191 Query: 214 FFTELNPNRFWIMTSNTRRLNGWFYDIFN-----------------IPLEDWK------R 250 +++ + I+ S +G F+D N P+ W+ Sbjct: 192 AMSQVGSDARIILCSTPNGASGHFFDTLNGFDNCVSDIERIRSGELPPVNKWQREDGNIA 251 Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310 I ++V G + + E + L E + + + A + E Sbjct: 252 IAIHWKSVYGDNPSYLEDLEKSLSLPKAQIAQEYDLS-LTESSSVVFSFAVVRAAATGEY 310 Query: 311 ID--DLYAPLIMGCDIAGEGGDK--TVVVFRRGNIIEHIFDWSAK 351 +G D AG G D +V + + G + + Sbjct: 311 EPQFTEDELYYVGVDPAGSGADYFCSVFLKKTGETFTVSKLYRKR 355 >gi|209548746|ref|YP_002280663.1| phage terminase, large subunit, PBSX family [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534502|gb|ACI54437.1| phage terminase, large subunit, PBSX family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 424 Score = 80.4 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 36/320 (11%), Positives = 86/320 (26%), Gaps = 45/320 (14%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q++ E P +K A GRG K+ +++ + + +P I+C Sbjct: 3 QIQIPEKFAPFLE-------PHRYKTAY-GGRGGAKSHTIGGLLVHIAARQPEF-IVCGR 53 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 + ++++++ + ++ + + S+ + Sbjct: 54 EFQNSIEDSVYRLL---------------ENTIKKDGLTDYKFTKTSIENTRTGSEFVFK 98 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 S+ + ++ +E + +++ W N + Sbjct: 99 GLSKLDGVSIKSLEGATK--LWIEEGQNITNGTLNNVIPTIRTEGSE-IWTSF-NPSVIE 154 Query: 235 GWFYDI-FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRY-GLDSDVARIEILGQFPQQE 292 + P D +++ E + +D G Sbjct: 155 APVWQRLVVKPPPDSVVVKVNHNDNPWFPKVLEEERRHHFVTMDRATYDNIWEGVPMAFT 214 Query: 293 VNNFIPHNYI---EEAMSREAIDDLYAPLIMGCDI--AGEG-GDKTVVVFRR---GNIIE 343 ++ + D P+I D+ A G GD + F + G + Sbjct: 215 AGAIFREEMAAMEKQGRIGKVPHDPTKPVIAVFDMGHAASGKGDPHAITFVQQGNGTAVN 274 Query: 344 HIFDWSAKLIQETNQEGCPV 363 I W N + P Sbjct: 275 AIGYWEG------NNKPLPT 288 >gi|194430118|ref|ZP_03062621.1| gp33 TerL [Escherichia coli B171] gi|215487586|ref|YP_002330017.1| predicted terminase, large subunit [Escherichia coli O127:H6 str. E2348/69] gi|260845222|ref|YP_003223000.1| putative terminase large subunit [Escherichia coli O103:H2 str. 12009] gi|194411828|gb|EDX28147.1| gp33 TerL [Escherichia coli B171] gi|215265658|emb|CAS10061.1| predicted terminase, large subunit [Escherichia coli O127:H6 str. E2348/69] gi|257760369|dbj|BAI31866.1| predicted terminase large subunit [Escherichia coli O103:H2 str. 12009] gi|309702924|emb|CBJ02255.1| putative phage gp33 TerL [Escherichia coli ETEC H10407] gi|323159191|gb|EFZ45181.1| gp33 TerL [Escherichia coli E128010] Length = 540 Score = 80.4 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 32/267 (11%), Positives = 69/267 (25%), Gaps = 19/267 (7%) Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 R +G + + L M I + E + ++ + + ++ Sbjct: 101 REMGLSWTAIGLACSLCLFNKEMVIGFGSRKEEYV-DSTGDPKALFWKARKFVETLPVEF 159 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 +A + + DEA+ Sbjct: 160 RGSWSEKKHAPYMRVEFP---------ETGAVIKGEAGDNIGRGDRTTLYLVDEAAFLQR 210 Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265 + T I S+ + F + + R D + Sbjct: 211 PLLIDAALSQTTRCR----IDLSSVNGMANPFAQKRHGGK--IPVFTFHWRDDPRKDEEW 264 Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCD 323 + + + V E+ + IP +++ A+ + D Sbjct: 265 YRRECEKI-DNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDAHIKLGIQPTGKRLGAMD 323 Query: 324 IAGEGGDKTVVVFRRGNIIEHIFDWSA 350 +A EG DK R G ++E++ +WS Sbjct: 324 VADEGRDKNAFSTRHGFLLENVREWSG 350 >gi|324114526|gb|EGC08494.1| hypothetical protein ERIG_00518 [Escherichia fergusonii B253] Length = 540 Score = 80.0 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 40/356 (11%), Positives = 87/356 (24%), Gaps = 24/356 (6%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIKGKPLEHFSQPHRWQL 56 P + + L + + E + + K F WG+ P Sbjct: 12 PDYQMVFEWRMERLQRIRQNPEILPALKQFYRTNPAQFIIDWGMTTDPRNIDYGLPVTIP 71 Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 + + R +G + + L + M I + Sbjct: 72 FLLFPKQEEWIHWIMERWGNRENGITEKSREMGLSWTAIGLACSLCLFKKEMVIGFGSRK 131 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 E + ++ + + ++ +A + Sbjct: 132 EEYV-DSTGDPKALFWKARKFVETLPVEFRGSWSEKKHAPYMRVEFP---------ETGA 181 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236 + DEA+ + T I S+ + Sbjct: 182 VIKGEAGDNIGRGDRTTLYLVDEAAFLQRPLLIDAALSQTTRCR----IDLSSVNGMANP 237 Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 F + + R D ++ + + V E+ + Sbjct: 238 FAQKRHGGK--IPVFTFHWRDDPRKDEEWYRRECEKI-DNPVVVAQELDLNYSASAEGVL 294 Query: 297 IPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350 IP +++ A+ + D+A EG DK R G ++E++ +WS Sbjct: 295 IPSEWVQAAVDAHIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSG 350 >gi|83308162|emb|CAJ29395.1| gp19 protein [Enterobacteria phage K1F] Length = 586 Score = 80.0 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 46/387 (11%), Positives = 92/387 (23%), Gaps = 91/387 (23%) Query: 19 LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78 LM A F F+ F W P+ P R Q++ + + + Sbjct: 11 LMTARMKADFVFFL--FVLWKALSLPV-----PTRCQIDMAKKLSAGDNR---------- 53 Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + A RGIGK+ + ++W + P + + ++ S+ + + + + ++P Sbjct: 54 RFILQAFRGIGKSFITCAFVVWKLWNNPDLKFMIVSASKERADANSIF-IKRIIDLMPQL 112 Query: 139 HWFEMQSLSLHPSGWYAE-LLEQSMGIDSKHYTITCRTY----------SEERPDTFVGP 187 + + + + K IT + E P+ Sbjct: 113 KELKPKQGQRDAVISFDVGPAKPDHSPSVKSVGITGQLTGSRADILIADDVEVPNNSATQ 172 Query: 188 HNTHGMAVFNDEASGT------------PDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 ++ E P W R Sbjct: 173 AARDRLSELVKEFDAILKPGGTIIYLGTPQNEMTLYRELEGRGYTTTIWPARY-PRDRKD 231 Query: 236 WFYDIFNIP-------LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 W + ED + + D + YG + + Sbjct: 232 WQSYGDRLAPMLQAELEEDPESFYWRPTDEVRFDDTDLKERELSYGKAGFALQFML---N 288 Query: 289 PQQEVNNFIPHNYIE----------EAMSREAIDDL------------------------ 314 P P + M + + + Sbjct: 289 PNLSDAEKYPLKLRDLIVADLDPASSPMVYQWLPNPQNKREDVPNVGLMGDSYHTYQTVG 348 Query: 315 -----YAPLIMGCDIAGEGGDKTVVVF 336 Y I+ D +G G D+T Sbjct: 349 SAFSSYTQKILVIDPSGRGKDETGYAV 375 >gi|39934961|ref|NP_947237.1| terminase GTA [Rhodopseudomonas palustris CGA009] gi|39648812|emb|CAE27333.1| probable large terminase, Rhodobacter capsulatus GTA orfg2 homologue [Rhodopseudomonas palustris CGA009] Length = 386 Score = 80.0 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 40/264 (15%), Positives = 72/264 (27%), Gaps = 35/264 (13%) Query: 82 ISAGRGIGKTTLNAWMMLWLI------STRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 + GRG GKT A + ++ +TRP I + S + + S L + Sbjct: 1 MLGGRGAGKTRAGAEWVRAMVAGTPPYATRPHGRIALVGESWHDAREVMVEGESGLLRIT 60 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 P R E + D A Sbjct: 61 PRRERPEWIATRKRLE------------------WPNGAVGEVFSADDPDSLRGPQFEAA 102 Query: 196 FNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253 + DE + + + + R + + T R + P Sbjct: 103 WCDELAKWRYAEASFDMLQFGLRLGSRPRQ--LITTTPRPLPLIKRLLGDPHTR-VTRAP 159 Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 + F E +++RY R E+ G+ + + + IE A R A Sbjct: 160 TRANAAHLSPAFLETVVARYAGT-RQGRQELDGELIEDRPDALWSRDRIERA--RVAAAP 216 Query: 314 LYAPLIMGCDI---AGEGGDKTVV 334 +++ D + G D + Sbjct: 217 PLVRIVVAIDPPGSSRPGADACGI 240 >gi|262279834|ref|ZP_06057619.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262260185|gb|EEY78918.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 416 Score = 80.0 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 42/288 (14%), Positives = 80/288 (27%), Gaps = 40/288 (13%) Query: 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI------ICIANSETQLKNTLWAEVSK 130 F+ A+ GR GKT L M ++ A + Q K W + + Sbjct: 9 RFRDAVC-GRRFGKTFLAKAEMRRAARLAAKWNVSVEDEIWYAAPTFKQAKRVFWKRLKQ 67 Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190 + E S+ + S H D + + Sbjct: 68 AIPASW--------------RAGKPNETECSITLRSGHVIRVVGL------DNYDDLRGS 107 Query: 191 HGMAVFNDEASGTPDIIN-KSILGFFT-------ELNPNRFWIMTSNTRRLNGWFYDIFN 242 + DE + + + + + ++ T + YD F Sbjct: 108 GLFFLIIDEWADCKWAAWEEVLRPMLSTCKYVVNGVQRVGGHVLRIGTPKGFNHCYDTFM 167 Query: 243 --IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 P + +++G + E I+++ +D E F + F N Sbjct: 168 DGQPGHEPDCKSFSYTSLQGGNIPESEIIVAKRKMDPKTFSQEYEASFESYQGVIFYCFN 227 Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348 + A + L +G D VV RRG + + ++ Sbjct: 228 RLLSASTETVQ--ANDVLHVGMDFNVT-KMAAVVYVRRGEQMHAVDEF 272 >gi|110680226|ref|YP_683233.1| hypothetical protein RD1_3034 [Roseobacter denitrificans OCh 114] gi|109456342|gb|ABG32547.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114] Length = 456 Score = 80.0 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 75/291 (25%), Gaps = 35/291 (12%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134 I GRG GKT A + + + + + Q++ + S L+ Sbjct: 63 VIMGGRGAGKTRAGAEWVRAQVEGARPLDEGRSRRVALVGETIEQVREVMIFGDSGILAC 122 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 P ++ + G A Sbjct: 123 SPPDRRPVWEAGRKRL------------------VWPNGAIATIHSAFDPEGLRGPQFDA 164 Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252 + DE + + + + + T R G + P + Sbjct: 165 AWVDELAKWKKAQDTWDMLQFALRLGDKPQVCVT--TTPRNVGVLKTLMKSPST-VSSHA 221 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + F E + +RY + R E+ G + IE R Sbjct: 222 PTEANAANLARSFLEEVRARYAGT-RLGRQELDGVLLEDAEGALWTTAGIEG--IRCEQA 278 Query: 313 DLYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360 +++ D +G D+ ++ + DW A ++ + +G Sbjct: 279 PELDRIVVAVDPSTTSGANSDECGIIVAGVKMAGAPQDWRAYVLADCTVQG 329 >gi|254465926|ref|ZP_05079337.1| phage DNA Packaging Protein [Rhodobacterales bacterium Y4I] gi|206686834|gb|EDZ47316.1| phage DNA Packaging Protein [Rhodobacterales bacterium Y4I] Length = 428 Score = 80.0 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 76/303 (25%), Gaps = 35/303 (11%) Query: 70 VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNT 123 + I GRG GKT A + L I +A + Q+++ Sbjct: 24 QRPPDGDWRAWVILGGRGAGKTRAGAEWVRSLAEGARPHDPGTARRIALVAETYDQVRDV 83 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 + S L+ P + ++ Sbjct: 84 MIHGDSGILACSPPDRRPKWKASERKL------------------IWPNGAEAQAFSAHD 125 Query: 184 FVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241 A + DE + + R + T R + Sbjct: 126 PEALRGPQFDAAWADELAKWRKGQESWDMLQFALRLGQDPRVCVT--TTPRNAPVLKRLL 183 Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301 P + + + F E + SRY + R E+ G Sbjct: 184 ASPST-VQTHAATEANRANLAPSFLEEVRSRYAGT-RLGRQELDGVMLSDIQGALWTTAA 241 Query: 302 IEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQ 358 + EA EA +++ D AG+ D +V DW A ++ + Sbjct: 242 LVEAQVAEAPP--LDRVVVAVDPAVSAGKDSDACGIVVAGAVTRGKPQDWQAYVLADCTV 299 Query: 359 EGC 361 +G Sbjct: 300 QGV 302 >gi|114569469|ref|YP_756149.1| hypothetical protein Mmar10_0918 [Maricaulis maris MCS10] gi|114339931|gb|ABI65211.1| protein of unknown function DUF264 [Maricaulis maris MCS10] Length = 450 Score = 79.6 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 43/315 (13%), Positives = 85/315 (26%), Gaps = 31/315 (9%) Query: 31 FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI-SAGRGIG 89 FV F+ ++ + + R + + + H + P + + GRG G Sbjct: 13 FVDTFWMQTMRERERAWHKEADRQERDAIHTDFRHRATGPQLPPPGEWLTWLFLGGRGAG 72 Query: 90 KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLH 149 KT A + R I + + ++ + +H + Sbjct: 73 KTRAGAEWVRHRAL-RTVSRIALVGPTFNDVREVMIE------GPSGLKHLGSAMERPRY 125 Query: 150 PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII-- 207 + + + + G + DE + PD Sbjct: 126 EA------------SRKRLVFPSGSQAYAFSAEDADGLRGPQFDYAWGDEFAAWPDPQRV 173 Query: 208 NKSILGFFTELNPNRFWIMTSNTRRLNGWF---YDIFNIPLEDWKRYQIDTRTVEGIDSG 264 ++ R I+ + T R ++ +Q + G Sbjct: 174 LDTLRMGVRLGGAPR--ILLTTTPRPIPALKALVKAWDPRGPIRVTHQPTAANAANLAPG 231 Query: 265 FHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI 324 F E + + YG S + R E+ G IE A +++ D Sbjct: 232 FVEALNAAYGG-SMLGRQEVEGLLIDDPDGALWTRPKIEAARLAAGQMPELDRIVVALDP 290 Query: 325 AGEGG---DKTVVVF 336 GG D+ +V Sbjct: 291 PATGGPRSDECGIVV 305 >gi|255262025|ref|ZP_05341367.1| conserved hypothetical protein [Thalassiobium sp. R2A62] gi|255104360|gb|EET47034.1| conserved hypothetical protein [Thalassiobium sp. R2A62] Length = 510 Score = 79.6 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 28/267 (10%), Positives = 56/267 (20%), Gaps = 35/267 (13%) Query: 81 AISAGRGIGKTTLNAWMMLWL------ISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 I GRG GKT A + + P + + + Q + + S L+ Sbjct: 11 VILGGRGAGKTRAGAEWVRAQVEGSGPLDVGPATRVALVGETIEQAREVMVFGESGILAC 70 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 P + A Sbjct: 71 SPDDRRPVWSTTRRQL------------------CWPNGAVAQLFSASDPERLRGPQFDA 112 Query: 195 VFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252 + DE + + + R + T R G + + Sbjct: 113 AWVDELAKWKKGQEAWDMLQFGMRLGDDPRVCVT--TTPRNVGVLRSL--LARSSTVTAH 168 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 T + + + + R E+ G +E + Sbjct: 169 GTTEANAAHLADAFLDEVRTRYAGTRLGRQELDGVLLADAEGALWTSKGLEASHVEVVP- 227 Query: 313 DLYAPLIMGCDI---AGEGGDKTVVVF 336 +++ D G D ++ Sbjct: 228 -QCDRVLVSVDPPVTGHMGSDDCGIIV 253 >gi|83945577|ref|ZP_00957923.1| Phage DNA Packaging Protein [Oceanicaulis alexandrii HTCC2633] gi|83850943|gb|EAP88802.1| Phage DNA Packaging Protein [Oceanicaulis alexandrii HTCC2633] Length = 410 Score = 79.6 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 38/274 (13%), Positives = 76/274 (27%), Gaps = 31/274 (11%) Query: 68 SNVNNSNPTIFKCAI-SAGRGIGKTTLNAWMMLWLISTRPGMS-IICIANSETQLKNTLW 125 + P ++ + GRG GKT A + + G I +A + + ++ + Sbjct: 21 RDAQKPPPGDWRIWLFLGGRGAGKTRAGAEWI--RAQVKAGCRRIALVAPTFSDVREVMV 78 Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185 + S +L++ ++ + Sbjct: 79 SGPSGFLNIGEEDERPRYEASRHRL------------------IWPNGAEAHGFSSEDPD 120 Query: 186 GPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243 G + DE + P + R I T R Sbjct: 121 GLRGPQFDCAWVDEFAAWTRPQETLDMLGLGLRLGEDPRLMIT--TTPRPI-PALKALLK 177 Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303 + + GF + RYG S +AR E+ G + I+ Sbjct: 178 QAGVVMTHAATEANAANLAPGFVAAMTDRYG-ASRLARQELEGVLIDDPDGALWTRDLID 236 Query: 304 EAMSREAIDDLYAPLIMGCD-IAGEGGDKTVVVF 336 +A+ A + +++ D A GD+ ++ Sbjct: 237 QALGLPAFEPE--RVVVAVDPPASATGDECGIIV 268 >gi|163742707|ref|ZP_02150092.1| terminase, large subunit, putative [Phaeobacter gallaeciensis 2.10] gi|161383962|gb|EDQ08346.1| terminase, large subunit, putative [Phaeobacter gallaeciensis 2.10] Length = 417 Score = 79.6 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 42/292 (14%), Positives = 79/292 (27%), Gaps = 35/292 (11%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134 I GRG GKT A + L I + + Q+++ + S L+ Sbjct: 24 VILGGRGAGKTRAGAEWVRTLAEGATPLSAGRARRIALLGETYDQVRDVMVQGDSGLLAC 83 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 P ++ T A Sbjct: 84 TPRDRRPTWKATERRL------------------IWPNGATAQAFSAHDPEALRGPQFDA 125 Query: 195 VFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252 + DE + + + R + T R G ++ P + + Sbjct: 126 AWADELAKWKRGQDSWDMLQFALRLGDDPRVCVT--TTPRNVGVLRELLASPST-VQTHA 182 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + + F + +RY S + R E+ G Q + + A A Sbjct: 183 ATEANRANLAASFLAEVRNRYAG-SRLGRQELDGILLQDIEGALWTNAGLVAAQI--AKA 239 Query: 313 DLYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC 361 +++ D AG+ D +V + DW A ++ + +G Sbjct: 240 PTLDRVVVAVDPAVSAGKHSDACGIVVVGATLQGPPQDWCAYVLADCTVQGV 291 >gi|194100357|ref|YP_002003787.1| gp19 [Enterobacteria phage EcoDS1] gi|193201352|gb|ACF15831.1| gp19 [Enterobacteria phage EcoDS1] Length = 587 Score = 79.6 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 46/387 (11%), Positives = 92/387 (23%), Gaps = 91/387 (23%) Query: 19 LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78 LM A F F+ F W P+ P R Q++ + + + Sbjct: 11 LMTARMKADFVFFL--FVLWKALSLPV-----PTRCQIDMAKKLSAGDNR---------- 53 Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + A RGIGK+ + ++W + P + + ++ S+ + + + + ++P Sbjct: 54 RFILQAFRGIGKSFITCAFVVWKLWNNPDLKFMIVSASKERADANSIF-IKRIIDLMPQL 112 Query: 139 HWFEMQSLSLHPSGWYAE-LLEQSMGIDSKHYTITCRTY----------SEERPDTFVGP 187 + + + + K IT + E P+ Sbjct: 113 QELKPKQGQRDAVISFDVGPAKPDHSPSVKSVGITGQLTGSRADILIADDVEVPNNSATQ 172 Query: 188 HNTHGMAVFNDEASGT------------PDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 ++ E P W R Sbjct: 173 AARDRLSELVKEFDAILKPGGTIIYLGTPQNEMTLYRELEGRGYTTTIWPARY-PRDKKD 231 Query: 236 WFYDIFNIP-------LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 W + ED + + D + YG + + Sbjct: 232 WQSYGDRLAPMLQAELEEDPESFYWRPTDEVRFDDTDLKERELSYGKAGFALQFML---N 288 Query: 289 PQQEVNNFIPHNYIE----------EAMSREAIDDL------------------------ 314 P P + M + + + Sbjct: 289 PNLSDAEKYPLKLRDLIVADLDPSSSPMVYQWLPNPQNKREDVPNVGLMGDSYHTYQTVG 348 Query: 315 -----YAPLIMGCDIAGEGGDKTVVVF 336 Y I+ D +G G D+T Sbjct: 349 SAFSSYTQKILVIDPSGRGKDETGYAV 375 >gi|307294267|ref|ZP_07574111.1| hypothetical protein SphchDRAFT_1737 [Sphingobium chlorophenolicum L-1] gi|306880418|gb|EFN11635.1| hypothetical protein SphchDRAFT_1737 [Sphingobium chlorophenolicum L-1] Length = 438 Score = 79.6 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 32/257 (12%), Positives = 65/257 (25%), Gaps = 22/257 (8%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + AGRG GKT A + + P I + + + + + S L++ P + Sbjct: 57 MMAGRGFGKTRAGAEWVRSVAEGDPAARIALVGATLGEARAVMVEGASGVLAVSPWWNRP 116 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + + DE + Sbjct: 117 AFLPALRKL------------------VWRNGAVATLFGAAEAESLRGPQFSHGWADEIA 158 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV-EG 260 ++ + T R + D + + Sbjct: 159 KWAGGQAAWDNLMMGMRLGIAPRVLATTTPRPVALVRGLVERNGSDVVVTRGRSADNASH 218 Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIM 320 + GF + YG + R E+ G+ ++ + +E A +++ Sbjct: 219 LADGFLAAMERNYGGT-RLGRQELDGELIEEVEGALWSRDLLERCRVAHVRGT-LARVVV 276 Query: 321 GCD-IAGEGGDKTVVVF 336 D A GD +V Sbjct: 277 AVDPPASVHGDACGIVV 293 >gi|294011207|ref|YP_003544667.1| hypothetical protein SJA_C1-12210 [Sphingobium japonicum UT26S] gi|292674537|dbj|BAI96055.1| conserved hypothetical protein [Sphingobium japonicum UT26S] Length = 437 Score = 79.6 bits (194), Expect = 8e-13, Method: Composition-based stats. Identities = 32/256 (12%), Positives = 66/256 (25%), Gaps = 20/256 (7%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + AGRG GKT A + + + P I + + + + + S L++ P Sbjct: 56 MLAGRGFGKTRAGAEWVRSVAESDPKARIALVGATLGEARAVMVEGASGILAVAP----- 110 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 +A L K + + DE + Sbjct: 111 ------WWNRPVFAPALR-------KLVWPNGAVATLYGAAEAESLRGPQFSHGWADEIA 157 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI 261 ++ + T R + D + T Sbjct: 158 KWAGGQAAWDNLMMGMRLGGAPRVLATTTPRPVPLVRGLVARAGGDVVVTRGRTADNVAH 217 Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMG 321 + + R + + R E+ G+ ++ + +E +++ Sbjct: 218 LADGFLAAMERSYGGTRLGRQELDGELIEEVEGALWSRDLLERCRVAHVR-GGLTRVVVA 276 Query: 322 CD-IAGEGGDKTVVVF 336 D A GD +V Sbjct: 277 VDPPASAHGDACGIVV 292 >gi|239828154|ref|YP_002950778.1| hypothetical protein GWCH70_2829 [Geobacillus sp. WCH70] gi|239808447|gb|ACS25512.1| conserved hypothetical protein [Geobacillus sp. WCH70] Length = 534 Score = 79.6 bits (194), Expect = 8e-13, Method: Composition-based stats. Identities = 64/436 (14%), Positives = 120/436 (27%), Gaps = 124/436 (28%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 M + ++ ++KL+ +++ + A+ NF+ G + P Q +FM Sbjct: 1 MAKRLTKEEKLKIIMNDFKLFAK------NFIKIV---DNNGDTVPFVLNPE--QEQFMG 49 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + + I GR IG TTL+ ML+ T+P + I + + + Sbjct: 50 QMGKYN--------------IILKGRQIGFTTLSLAYMLYSACTKPDTNYIIMTH-HASV 94 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 +L+ ++ K LPH + + L P E + S+ T + Sbjct: 95 SKSLFVKLKKMYRSLPHEKYPD-----LFPKALLNNRDELYLQNGSRVIIATAQGEDVIS 149 Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF--TELNPNRFWIMTSNTRRLNGWFY 238 +TF H E + P + I+ I+ +T + Sbjct: 150 GNTFQLIH--------LSEMAKYPQDVQDEIIATCIPALAKNESSSIIIESTAYGYNTYQ 201 Query: 239 DIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG------------ 286 ++F D + + + + + R G Sbjct: 202 EMFMKAYRDKESVWKAHFYS-WLAKAYEKQFKHTFDEAEAWFRANNQGRRMTYEDLDHDE 260 Query: 287 -------------------------------QFPQQEVNNF------------------I 297 +FP F Sbjct: 261 KILKDKYGATYRQLMFRRYYIATNSLDKFKREFPTTPDEAFAESNKSIFDTNKIIERLQY 320 Query: 298 PHNYIEEAMSREAIDDLYAPLI-----------------MGCDIA-GEGG--DKTVVVFR 337 IE + + D+ P I G D+A G GG D T + Sbjct: 321 VIQPIETKEIYDILPDVLKPYINKNLFIYHLPKPKVRHYAGVDVASGTGGNNDYTAISIL 380 Query: 338 RGNIIEHIFDWSAKLI 353 + + + W + I Sbjct: 381 DADG-QQVASWYSNDI 395 >gi|325292327|ref|YP_004278191.1| large terminase phage packaging protein [Agrobacterium sp. H13-3] gi|325060180|gb|ADY63871.1| large terminase phage packaging protein [Agrobacterium sp. H13-3] Length = 419 Score = 79.6 bits (194), Expect = 8e-13, Method: Composition-based stats. Identities = 37/288 (12%), Positives = 73/288 (25%), Gaps = 35/288 (12%) Query: 55 QLEFMEAVDV--HCHSNVNNSNPTIFKCAIS-AGRGIGKTTLNAWMM--LWLISTRPGMS 109 Q + + + ++ + GRG GKT A + + + + Sbjct: 11 QKQVFTLLRDWRFIGNLPQQPPEGDWRTWLLIGGRGSGKTRAGAEWVHRIASAGKQSDLR 70 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLP-HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 I +A + + + +S + R FE+ L Sbjct: 71 IALVAETLGDAREVMIDGISGICRIARRCRPAFEVSRRRL-------------------- 110 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIM 226 + + DE P + R + Sbjct: 111 IWPNGAMAQVFSSEDPESLRGPQFHMAWADELGKWKYPQETWDMLQFGLRLGEAPRQLVT 170 Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 T R + P + + GF + + RYG + R EI G Sbjct: 171 --TTPRPIPLLKALLADPSSR-VAKMPTAMNAQNLSPGFLKAMHDRYGGT-RLGRQEIGG 226 Query: 287 QFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD-IAGEGGDKTV 333 + + +E + + A +++ D AG G + Sbjct: 227 ELIDEREGALWKRADLEAIVETDHEP--LARIVVAVDPPAGIGENSCC 272 >gi|251778523|ref|ZP_04821443.1| phage terminase, large subunit, pbsx family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082838|gb|EES48728.1| phage terminase, large subunit, pbsx family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 448 Score = 79.2 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 35/278 (12%), Positives = 79/278 (28%), Gaps = 22/278 (7%) Query: 60 EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119 +++ + + T F G G GK+ M+ P + I Sbjct: 25 KSIFNDAYLPQLQNYQTRFNI-YYGGAGSGKSHFVVQKMILKYLEYPNRKCLVIRKVGNS 83 Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 L+++++ ++L H E + S+ + + I E Sbjct: 84 LRDSIFELFK---TVLSDWHLLERCEIRDSL---------LSITLPNGSTFIFKGLDDSE 131 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239 + + + + +E + + N + N + W Y+ Sbjct: 132 KIKSI-----ANIDDIVVEECTEIDKQEFSQLGLRLRSKNGYNQIHVMFNPISKSNWVYE 186 Query: 240 IF---NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 ++ D + + + + + +I D RI LG+F + + Sbjct: 187 MWFQNGYDESDTMVLKTTYKDNKFLPYDYINALIKMKETDPVYYRIYALGEFASLDKLIY 246 Query: 297 IPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334 ++ + YA G D G D + Sbjct: 247 TNWEELDFDWRKLMQQRPYAKACFGLDF-GYVNDPSAF 283 >gi|86138748|ref|ZP_01057320.1| terminase, large subunit, putative [Roseobacter sp. MED193] gi|85824395|gb|EAQ44598.1| terminase, large subunit, putative [Roseobacter sp. MED193] Length = 417 Score = 79.2 bits (193), Expect = 9e-13, Method: Composition-based stats. Identities = 35/313 (11%), Positives = 77/313 (24%), Gaps = 38/313 (12%) Query: 62 VDVHCHSNVNNSNPTIFKCAI-SAGRGIGKTTLNAWMMLWLIST------RPGMSIICIA 114 + ++ + GRG GKT A + + G + I Sbjct: 4 LFEFWAHAHQLPPSGEWRTWVILGGRGAGKTRAGAEWIRTQVEGATPLGPGRGRRLALIG 63 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 + Q+++ + S L+ P + ++ Sbjct: 64 ETYDQVRDVMILGDSGILACSPSDRRPQWKAGERKL------------------IWANGA 105 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRR 232 + DE + + + R + T R Sbjct: 106 MAQAFSAHDPEALRGPQFDTAWADELAKWRRAREAWDMLQFSLRLGDDPRVCVT--TTPR 163 Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292 + P K + + F + +RY S + R E+ G Sbjct: 164 NAALLRQLLASPST-VKSHAATEANRANLAPSFLSEVRARYAG-SRLGRQELDGILLSDV 221 Query: 293 VNNFIPHNYIEEAMSREAIDDLY-APLIMGCDIA---GEGGDKTVVVFRRGNIIEHIFDW 348 + + +++ D A G+G D ++ + + W Sbjct: 222 EGAIWRAAQL---AELQVPTAPALDRIVVAVDPAVSSGKGSDACGIIVAGACLQGPVETW 278 Query: 349 SAKLIQETNQEGC 361 A ++ + +G Sbjct: 279 RAYVLADRTVQGV 291 >gi|316934938|ref|YP_004109920.1| hypothetical protein Rpdx1_3618 [Rhodopseudomonas palustris DX-1] gi|315602652|gb|ADU45187.1| hypothetical protein Rpdx1_3618 [Rhodopseudomonas palustris DX-1] Length = 431 Score = 79.2 bits (193), Expect = 9e-13, Method: Composition-based stats. Identities = 39/264 (14%), Positives = 71/264 (26%), Gaps = 35/264 (13%) Query: 82 ISAGRGIGKTTLNAWMMLWLI------STRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 + GRG GKT A + ++ +TRP I + S + + S L + Sbjct: 46 MLGGRGAGKTRAGAEWVRAMVAGTPPYATRPHGRIALVGESWHDAREVMVEGESGLLRIT 105 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 P R E + D A Sbjct: 106 PRRERPEWIATRKRLE------------------WPNGAVGEVFSADDPDSLRGPQFEAA 147 Query: 196 FNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253 + DE + + + + R + + T R + P Sbjct: 148 WCDELAKWRYAEASFDMLQFGLRLGSRPRQ--LITTTPRPLPLIKRLLADPHTR-VTRAP 204 Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 + F E +++RY R E+ G+ + + + IE A R Sbjct: 205 TRANAAHLSPAFLETVVARYAGT-RQGRQELDGELIEDRPDALWSRDRIERA--RVGAAP 261 Query: 314 LYAPLIMGCDI---AGEGGDKTVV 334 +++ D + G D + Sbjct: 262 PMVRIVVAIDPPGSSRPGADACGI 285 >gi|163731339|ref|ZP_02138786.1| hypothetical protein RLO149_18584 [Roseobacter litoralis Och 149] gi|161394793|gb|EDQ19115.1| hypothetical protein RLO149_18584 [Roseobacter litoralis Och 149] Length = 286 Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 38/296 (12%), Positives = 76/296 (25%), Gaps = 36/296 (12%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134 I GRG GKT A + + + + + Q++ + S L+ Sbjct: 15 VIMGGRGAGKTRAGAEWVRAQVEGARPLDEGRSRRVALVGETIEQVREVMIFGDSGILAC 74 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 P ++ + A Sbjct: 75 SPPDRRPVWEAGRKRL------------------VWPNGAIATIHSAFDPEELRGPQFDA 116 Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252 + DE + + + + + T R G + P + Sbjct: 117 AWVDELAKWKKAQDTWDMLQFALRLGDKPQVCVT--TTPRNVGVLKTLMKSPST-VSSHA 173 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + F E + +RY + R E+ G + IE R Sbjct: 174 PTEANAANLARSFLEEVRARYAGT-RLGRQELDGVLLEDAEGALWTTAGIEG--IRCEKA 230 Query: 313 DLYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG-CPVG 364 +++ D +G D+ ++ + DW A ++ + +G P G Sbjct: 231 PELDRIVVAVDPSTTSGANSDECGIIVAGVKMAGAPQDWRAYVLADCTVQGASPAG 286 >gi|224796473|ref|YP_002641230.1| phage terminase, large subunit, pbsx family [Borrelia spielmanii A14S] gi|224497687|gb|ACN53304.1| phage terminase, large subunit, pbsx family [Borrelia spielmanii A14S] Length = 450 Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 45/289 (15%), Positives = 85/289 (29%), Gaps = 45/289 (15%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMS 109 Q E + ++ H K S G GKT L +++++ + + Sbjct: 49 QKEVLFDIESH----------KYSKVIFSGGIASGKTFLASYLLIKKLIENKSFYEQDTN 98 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I NS + L ++ K +L + + +S EL Sbjct: 99 NFIIGNSISLLMTNTIKQIEKICRLLGI-DYQKKKSGQSFCKIAGFELN----------- 146 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 Y + D F + ++ +EA+ +L + I +N Sbjct: 147 -----IYGGKNRDAFSKIRGGNSAIIYVNEATVIHKETLLEVLKRLRKG--KSIIIFDTN 199 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL-GQF 288 +F + + +K Y T + F E + S + +L G++ Sbjct: 200 PESPAHFFKTDYIENTDVFKTYNFTTYDNPLNSADFIETQ-EKLYKHSPAYKARVLYGEW 258 Query: 289 PQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336 ++ D + IM D A GGD T + Sbjct: 259 I-VNESSLFNEMIFN-------QDYEFKSPIMYIDPAFSVGGDNTAICV 299 >gi|219872451|ref|YP_002476937.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr] gi|219694305|gb|ACL34832.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr] Length = 450 Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 46/288 (15%), Positives = 84/288 (29%), Gaps = 43/288 (14%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMS 109 Q E + ++ H K S G GKT L +++++ + + Sbjct: 49 QKEVLFDIESH----------DYSKVIFSGGIASGKTFLASYLLIKKLIENKSFYEKDTN 98 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I NS L ++ K L + + +S EL Sbjct: 99 NFIIGNSIGLLMTNTIKQIEKICGFLGI-DYQKKKSGESFCKIAGLELN----------- 146 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 Y + D+F + ++ +EA+ ++ + I +N Sbjct: 147 -----IYGGKNRDSFSKIRGGNSAIIYVNEATVIHKETLLEVIKRLRKG--KAIIIFDTN 199 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 +F F + +K Y T + F E Y + G++ Sbjct: 200 PEGPTHFFKTDFIENKDVFKTYNFTTYDNPLNSADFIETQKKLYKHLPAYKARVLYGEWI 259 Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336 E F E +++ + IM D A GGD T + Sbjct: 260 LNESTLFN-----EMIFNQDYE---FKSPIMYIDPAFSVGGDNTAICV 299 >gi|297566322|ref|YP_003685294.1| hypothetical protein Mesil_1911 [Meiothermus silvanus DSM 9946] gi|296850771|gb|ADH63786.1| protein of unknown function DUF264 [Meiothermus silvanus DSM 9946] Length = 427 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 91/277 (32%), Gaps = 28/277 (10%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 + + FK + + R +GK+ + + P + ++ E Q K Sbjct: 19 DQSRFKIGLWS-RQVGKSFAASLEAVLDCVAHPRSLWVFLSRGERQSKE--------LAE 69 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 ++ + AE + + + + I+ P G Sbjct: 70 KAQRHLEAIQVVAEMYDEPFDAESTQTVIRLPNGSRIIS-------LPANPDTARGYSGN 122 Query: 194 AVFNDEAS--GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF--NIPLEDWK 249 V DE + I ++ T + + S + G FY+I+ + W Sbjct: 123 -VLLDEFALHKDSREIWGALYPTIT-RSKRYRLRVLSTPKGQQGKFYEIWQPEPGGDLWS 180 Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309 R+++D + + D + + E L +F + ++P+ I S + Sbjct: 181 RHRVDIYDAVQQGLEVDPEELRKGLKDPVLWQQEYLLEFVDEAS-AWLPYELITSCESSQ 239 Query: 310 AIDDL--YAPLIMGCDIAGEGGDKTVVVF--RRGNII 342 A D L +G DI D +V+ R G+++ Sbjct: 240 ARTDGALEGDLYLGMDIGRH-RDLSVIWVAERVGDVL 275 >gi|291334627|gb|ADD94276.1| hypothetical protein Syncc9605_0456 [uncultured phage MedDCM-OCT-S04-C231] Length = 320 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 38/236 (16%), Positives = 77/236 (32%), Gaps = 37/236 (15%) Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 K+ W + K + P W E + I+ I T Sbjct: 1 MAKDIAWRALKKLV-----------------PKVWIHSKNETDLRIE----LINGSTIEL 39 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTP-DIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 + + + V DEA+ ++ + I + + + S WF Sbjct: 40 KGTENAMALRGRSLSGVVLDEAAFMDAEVWFEVIRPALA--DKEGWALFISTPDGTASWF 97 Query: 238 YDIF----NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293 YD++ +W+R+ T + E ++ D+ R E F + + Sbjct: 98 YDLWCYVPEDETGEWQRWSYTTIEGGNVSKHEVEAARAQL--DNRTFRQEFEASF--ENL 153 Query: 294 NNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGD-KTVVV-FRRGNIIEHIFD 347 + ++ +E +S+EA D PL++G D D + + + G + + Sbjct: 154 TGLVAISFSDENISQEAKDISIQPLLLGVD---FNVDPMSGICAVKNGETLYVFDE 206 >gi|77118209|ref|YP_338131.1| maturation protein [Enterobacteria phage K1F] gi|72527953|gb|AAZ73005.1| maturation protein [Enterobacteria phage K1F] Length = 575 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 45/386 (11%), Positives = 91/386 (23%), Gaps = 91/386 (23%) Query: 20 MHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFK 79 M A F F+ F W P+ P R Q++ + + + + Sbjct: 1 MTARMKADFVFFL--FVLWKALSLPV-----PTRCQIDMAKKLSAGDNR----------R 43 Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 + A RGIGK+ + ++W + P + + ++ S+ + + + + ++P Sbjct: 44 FILQAFRGIGKSFITCAFVVWKLWNNPDLKFMIVSASKERADANSIF-IKRIIDLMPQLK 102 Query: 140 WFEMQSLSLHPSGWYAE-LLEQSMGIDSKHYTITCRTY----------SEERPDTFVGPH 188 + + + + K IT + E P+ Sbjct: 103 ELKPKQGQRDAVISFDVGPAKPDHSPSVKSVGITGQLTGSRADILIADDVEVPNNSATQA 162 Query: 189 NTHGMAVFNDEASGT------------PDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236 ++ E P W R W Sbjct: 163 ARDRLSELVKEFDAILKPGGTIIYLGTPQNEMTLYRELEGRGYTTTIWPARY-PRDRKDW 221 Query: 237 FYDIFNIP-------LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 + ED + + D + YG + + P Sbjct: 222 QSYGDRLAPMLQAELEEDPESFYWRPTDEVRFDDTDLKERELSYGKAGFALQFML---NP 278 Query: 290 QQEVNNFIPHNYIE----------EAMSREAIDDL------------------------- 314 P + M + + + Sbjct: 279 NLSDAEKYPLKLRDLIVADLDPASSPMVYQWLPNPQNKREDVPNVGLMGDSYHTYQTVGS 338 Query: 315 ----YAPLIMGCDIAGEGGDKTVVVF 336 Y I+ D +G G D+T Sbjct: 339 AFSSYTQKILVIDPSGRGKDETGYAV 364 >gi|255321082|ref|ZP_05362250.1| gp33 TerL [Acinetobacter radioresistens SK82] gi|262379515|ref|ZP_06072671.1| bacteriophage TerL protein [Acinetobacter radioresistens SH164] gi|255301852|gb|EET81101.1| gp33 TerL [Acinetobacter radioresistens SK82] gi|262298972|gb|EEY86885.1| bacteriophage TerL protein [Acinetobacter radioresistens SH164] Length = 558 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 33/241 (13%), Positives = 64/241 (26%), Gaps = 21/241 (8%) Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 L H+ L + + T + E D Sbjct: 152 KTLLHKFRDMYSKLPAWMKPKG-FIEKVHDNYMRIINPDNGATVTGEAGDNIG--RGGRT 208 Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252 F DE + +++ ++ I S + F+ + + Sbjct: 209 TMYFLDEWAFVERQ--EAVDAAISQNTN--VHIKGSTPNGIGDKFHQD--RFSGRYAVFT 262 Query: 253 IDTRTVE--GIDSGFHEGIISRYGL------DSDVARIEILGQFPQQEVNNFIPHNYIEE 304 + R +I + D V E+ + IP +++ Sbjct: 263 MAWRDNPDKNWQVELDGKLIYPWYEKQLATLDDIVLAQEVDIDYAASVEGVLIPSAWVQA 322 Query: 305 AMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS--AKLIQETNQEG 360 A+ + D+A EG DK R G +++++ WS I T Q+ Sbjct: 323 AVDAHIKLGIEPSGERNGALDVADEGKDKNSFAARHGIVLQYLDTWSGIGDDIFGTTQKA 382 Query: 361 C 361 Sbjct: 383 I 383 >gi|291296347|ref|YP_003507745.1| hypothetical protein Mrub_1969 [Meiothermus ruber DSM 1279] gi|290471306|gb|ADD28725.1| protein of unknown function DUF264 [Meiothermus ruber DSM 1279] Length = 426 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 39/270 (14%), Positives = 81/270 (30%), Gaps = 27/270 (10%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 + FK + + R GK+ + + G I ++ E Q Sbjct: 20 SRFKIGLWS-RQTGKSFAASLEAVLDCLEHRGQLWIFLSRGERQSLE--------LAEKA 70 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 LH + + + + I+ P G V Sbjct: 71 KRHCEAIRAVAELHQEQFDVATKQYVIQFPNGSRIIS-------LPANPDTARGYSGS-V 122 Query: 196 FNDEASG--TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQ 252 DE I +I T N + S +G F++++ P + W R++ Sbjct: 123 LLDEFGFHQDSREIWGAIYPTIT-RNERYRIRVISTPNGQSGKFWELWQGGPGDVWSRHR 181 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA----MSR 308 +D ++ + D + E L +F ++ ++P++ + Sbjct: 182 VDIYDAVKEGLAIDPEVLRQGIRDPLKWQQEYLLEFVEEN-TAWLPYDLLATCESELART 240 Query: 309 EAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338 + + L +G DI + D +V+ Sbjct: 241 DGELEREGELYLGMDIGRQ-RDLSVIWVIE 269 >gi|326536951|ref|YP_004306358.1| DNA packaging protein B [Pseudomonas phage phiIBB-PF7A] gi|318054527|gb|ADV35703.1| DNA packaging protein B [Pseudomonas phage phiIBB-PF7A] Length = 588 Score = 78.4 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 47/399 (11%), Positives = 95/399 (23%), Gaps = 91/399 (22%) Query: 24 CVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS 83 SF F+ F W P+ P + Q+ + + + + Sbjct: 14 LKGSFVAFL--FVLWAALNLPV-----PTKQQISMSKKLAAGDSR----------RFILQ 56 Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 A RGIGK+ + ++W + P + I+ ++ ++ + + + + +LP H + Sbjct: 57 AFRGIGKSFITCAFVVWKLWNNPDLKIMIVSANKDRADANSVF-IKRIIDLLPFLHELKP 115 Query: 144 QS-----------LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 ++ P + G + E P Sbjct: 116 RAGQRDSSLSFDVGPARPDHSPSVKSVGVTGGMTGSRADILIADDVEVPGNSGTQSARDH 175 Query: 193 MAVFNDEASGT------------PDIINKSILGFFTELNPNRFWIMTSNTRRLNG---WF 237 + E P W R + +F Sbjct: 176 LGELVKEFDAILKPDGTIIYLGTPQTEMTLYRELEDRGYSTTIWPARY-PRDVADLESYF 234 Query: 238 YDIFNIPLEDWKRYQ---------IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ- 287 + N D D YG + + Sbjct: 235 HAKGNRSRLDPTMLAELEADSRLFWKPTDPVRFDDEDLRERELSYGKGGFALQFMLNPNL 294 Query: 288 -----FPQQEVNNFIPHNYIEEA--MSREAIDD--------------------------- 313 +P + + + +E A + +D Sbjct: 295 SDIEKYPLKLRDWIVAALDMESAPTTWQWLPNDRNEAKGLPLVGLKGDRFHRYESCGTTT 354 Query: 314 -LYAPLIMGCDIAGEGGDKTVVVF-RRGNIIEHIFDWSA 350 Y I+ D +G G D+T + N + +W Sbjct: 355 AKYDQKILVIDPSGRGKDETGYCVLYQLNGYIFLMEWGG 393 >gi|90419122|ref|ZP_01227033.1| phage terminase large subunit [Aurantimonas manganoxydans SI85-9A1] gi|90337202|gb|EAS50907.1| phage terminase large subunit [Aurantimonas manganoxydans SI85-9A1] Length = 411 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 37/279 (13%), Positives = 70/279 (25%), Gaps = 36/279 (12%) Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI------STRPGMSIICIANSETQL 120 + + + GRG GKT A + + + RP I IA + Sbjct: 14 RRSQLPPPGHWRQWLLIGGRGSGKTRAGAEWVRAMAAGAPPIAARPHGRIALIAETLGDA 73 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 + + A S ++ E + Sbjct: 74 REVMIAGESGIVAAS-------------------VEGRPVYEVSRRRLVFPNGAIAQVFS 114 Query: 181 PDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 + A + DE + + ++ R + + T R Sbjct: 115 SEDPDALRGYQFDAAWGDEFAKWVHGEACFDNLQFGLRLGVRPR--ALFTTTPRPI-PLL 171 Query: 239 DIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIP 298 + + GF + +RYG S + R E+ G + + Sbjct: 172 KQLMADAGTASTHMRTAENAANLAPGFLAAMEARYGG-SRLGRQELEGLMLEAREDALFD 230 Query: 299 HNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVV 334 I+ A R A +++ D A D + Sbjct: 231 VAAIDAARVRVAP--ELRRVVVAVDPPATATTRSDACGI 267 >gi|317153313|ref|YP_004121361.1| hypothetical protein Daes_1602 [Desulfovibrio aespoeensis Aspo-2] gi|316943564|gb|ADU62615.1| hypothetical protein Daes_1602 [Desulfovibrio aespoeensis Aspo-2] Length = 507 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 35/253 (13%), Positives = 67/253 (26%), Gaps = 29/253 (11%) Query: 38 WGIKGKPLEHFSQPHRW--QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95 WG S W Q+E + + + GR +GK+ + + Sbjct: 20 WGQAYLYNRDGSGRDYWPHQVEDLRCLARNIIHLD--------------GRDVGKSIVLS 65 Query: 96 WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 L T G + A + L +++ E+ L P + P Sbjct: 66 TDALHYAFTTRGGQGLIAAPHQGHL-DSIIEEIEYQLDTNPDLMNSIAVTKYGKPKIHRK 124 Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 S Y Y + H V+ DE + + K++ Sbjct: 125 PYFRLEFTNGSVLYFRPAGAY-------GDSFRSLHVGRVWVDEGAWLTERAWKALRQCL 177 Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS-RYG 274 + S L Y + + ++ + ++ G Sbjct: 178 KTGG---ILRIYSTPNGLRDTTYYRLTS-SDQFHVFRWPSWLNPLWTEDRESELLEFYGG 233 Query: 275 LDSDVARIEILGQ 287 DS + E+ G+ Sbjct: 234 RDSSGWQHEVAGE 246 >gi|85375635|ref|YP_459697.1| Phage DNA packaging protein [Erythrobacter litoralis HTCC2594] gi|84788718|gb|ABC64900.1| Phage DNA Packaging Protein [Erythrobacter litoralis HTCC2594] Length = 450 Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 39/278 (14%), Positives = 80/278 (28%), Gaps = 30/278 (10%) Query: 68 SNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 + ++ I AGRG GKT A + + I + S ++++ + Sbjct: 49 RDEQQPPEGPWRVWLICAGRGFGKTRAGAEWVRNVARHDGEARIALVGASLVEVRSVMVE 108 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 S L+ P G A E S+ YS P++ Sbjct: 109 GESGVLAASP---------------GALAPEFEPSLRRLQWPNGAQAFLYSAGEPES--- 150 Query: 187 PHNTHGMAVFNDEASGTPD------IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240 + DE + + ++ + R ++ + T R + Sbjct: 151 LRGPQHTHAWCDEIAKWDNAGLRALAAWDNLQMGMRLGDHPR--VLATTTPRTVALMQRL 208 Query: 241 FNIPLEDWKRY-QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299 + Q T G+ + + + + R E+ G+ ++ Sbjct: 209 YAEVESGAVVLAQGKTEDNAGVLPTAYFEAMLDQYGATSLGRQELEGEMLEEVDGALWSR 268 Query: 300 NYIEEAMSREAIDDLYAPLIMGCD-IAGEGGDKTVVVF 336 +E+ +++G D A GD +V Sbjct: 269 ALLEQCR-TAGTGAERIRVVVGVDPPASSSGDACGIVV 305 >gi|297247965|ref|ZP_06931683.1| phage DNA packaging protein [Brucella abortus bv. 5 str. B3196] gi|297175134|gb|EFH34481.1| phage DNA packaging protein [Brucella abortus bv. 5 str. B3196] Length = 415 Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 38/295 (12%), Positives = 78/295 (26%), Gaps = 39/295 (13%) Query: 56 LEFMEAVDVHCHSNVNNSNPTI--FKCA-ISAGRGIGKTTLNAWMMLWLISTRPG----- 107 + + A D + P ++ I GRG GKT A + + P Sbjct: 6 RQILAAQDEWLIRARDAQLPPDGDWRVWLIMGGRGSGKTRAGAEWVSGMALGLPPFAGKP 65 Query: 108 -MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 I + + + + S LS+ ++ Sbjct: 66 SGHIALVGETFNDAREVMVDGPSGILSVSRL-VRPRYEASRRRL---------------- 108 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFW 224 + + A + DE + P + + R Sbjct: 109 --IWDNGAVATLFSSEDPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPR-Q 165 Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 ++T+ R + + + GF + I RY + R E+ Sbjct: 166 VVTTTPRAV--PLLKALLTDRTVSMTHMRTAENAGNLAEGFMQTIARRYAGT-RLGRQEL 222 Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVVVF 336 G+ ++ + IE+ A +++ D +G+ D +V Sbjct: 223 DGELVEERPGALWSRDRIEQCFEEN--PPPLARIVVAVDPPASSGKASDACGIVV 275 >gi|183600815|ref|ZP_02962308.1| hypothetical protein PROSTU_04416 [Providencia stuartii ATCC 25827] gi|188019600|gb|EDU57640.1| hypothetical protein PROSTU_04416 [Providencia stuartii ATCC 25827] Length = 413 Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 38/274 (13%), Positives = 77/274 (28%), Gaps = 27/274 (9%) Query: 69 NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL----ISTRPGMSIICIANSETQLKNTL 124 V + ++ A GRG KT A M I+C L+ + Sbjct: 14 PVFENEGVRYRGAY-GGRGSAKTRTFALMTAIRGYMAAMNGQSGVILCAREYMNSLEESS 72 Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184 EV + + +P W ++ E ++ R + Sbjct: 73 MEEVKQAIRSVP----------------WLSDFYELGEKYIRTKCRSVSYVFAGLRHNLD 116 Query: 185 VGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-I 243 + + DEA +I + E W+ N + F Sbjct: 117 SIKSKARILIAWVDEAESVSEIAWTKLAPTVREAGSE-IWVTW-NPEKDGSATDKRFRKE 174 Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYI 302 P ++ +++ S E +S D + G + + + + Y+ Sbjct: 175 PPDNAIIVEMNYDDNPWFPSVLEEERLSDQSRLDPNTYAWIWEGAYLENSDKQVLANKYV 234 Query: 303 EEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 ++ + + L+ G D G D ++ Sbjct: 235 VQSF-PDDLWKQADRLLFGADF-GFAKDPNTLIR 266 >gi|322835667|ref|YP_004215693.1| terminase large subunit [Rahnella sp. Y9602] gi|321170868|gb|ADW76566.1| terminase large subunit [Rahnella sp. Y9602] Length = 539 Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 51/369 (13%), Positives = 97/369 (26%), Gaps = 50/369 (13%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIKGKPL-EHFSQPH--- 52 P + + L + E + + F WG+ P F P Sbjct: 12 PDYGQVFEWRMERLQRIRQQPEMLPALNAFYRDNPAQFIIDWGMTTDPRNLDFGMPVSVP 71 Query: 53 ----RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108 Q E++ + N R +G + + + L M Sbjct: 72 FLLFPKQEEWINWIMDRRSQQENGITEKS--------REMGLSWTSIGLACALCLFNKEM 123 Query: 109 SIICIANSETQLKNT-----LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163 I + E + +T L+ + K++ MLP + P Sbjct: 124 VIGFGSRKEEYVDSTGDPKALFWKARKFVEMLPVEFRGGWSAKKHAPYMRVEFP------ 177 Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223 + F DEA+ + T Sbjct: 178 ---------TTGAVLKGEAGDNIGRGDRTTLYFVDEAAFLQRPLLIEASLSQTTRCR--- 225 Query: 224 WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283 I S+ + F + + R+ D ++ ++ + V E Sbjct: 226 -IDLSSVNGMANPFAQKRHG--GRIPVFTFHWRSDPRKDEAWYAKECAKI-DNPVVVAQE 281 Query: 284 ILGQFPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNI 341 + + IP+ +I A++ + D+A EG DK R G + Sbjct: 282 LDLNYSASAEGVLIPNEWIRAAINAHIKLGIQPTGKRLGAMDVADEGRDKNAFSARYGFL 341 Query: 342 IEHIFDWSA 350 + + +WS Sbjct: 342 LTEVEEWSG 350 >gi|261315193|ref|ZP_05954390.1| phage DNA Packaging protein [Brucella pinnipedialis M163/99/10] gi|261304219|gb|EEY07716.1| phage DNA Packaging protein [Brucella pinnipedialis M163/99/10] Length = 329 Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 38/295 (12%), Positives = 78/295 (26%), Gaps = 39/295 (13%) Query: 56 LEFMEAVDVHCHSNVNNSNPTI--FKCA-ISAGRGIGKTTLNAWMMLWLISTRPG----- 107 + + A D + P ++ I GRG GKT A + + P Sbjct: 6 RQILAAQDEWLIRARDAQLPPDGDWRVWLIMGGRGSGKTRAGAEWVSGMALGLPPFAGKP 65 Query: 108 -MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 I + + + + S LS+ ++ Sbjct: 66 SGHIALVGETFNDAREVMVDGPSGILSVSRL-VRPRYEASRRRL---------------- 108 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFW 224 + + A + DE + P + + R Sbjct: 109 --IWDNGAVATLFSSEDPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPR-Q 165 Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 ++T+ R + + + GF + I RY + R E+ Sbjct: 166 VVTTTPRAV--PLLKALLTDRTVSMTHMRTAENAGNLAEGFMQTIARRYAGT-RLGRQEL 222 Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVVVF 336 G+ ++ + IE+ A +++ D +G+ D +V Sbjct: 223 DGELVEERPGALWSRDRIEQCFEEN--PPPLARIVVAVDPPASSGKASDACGIVV 275 >gi|256369024|ref|YP_003106532.1| phage terminase large subunit, putative [Brucella microti CCM 4915] gi|255999184|gb|ACU47583.1| phage terminase large subunit, putative [Brucella microti CCM 4915] Length = 384 Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 34/265 (12%), Positives = 69/265 (26%), Gaps = 36/265 (13%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSMLP 136 GRG GKT A + + P I + + + + S LS+ Sbjct: 1 MGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVSR 60 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 ++ + + A + Sbjct: 61 L-VRPRYEASRRRL------------------IWDNGAVATLFSSEDPDSLRGPQFDAAW 101 Query: 197 NDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254 DE + P + + R ++T+ R + + Sbjct: 102 CDELAKWKNPQETWDMLQFGLRLGDNPR-QVVTTTPRAV--PLLKALLTDRTVSMTHMRT 158 Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314 + GF + I RY + R E+ G+ ++ + IE+ Sbjct: 159 AENAGNLAEGFMQTIARRYAGT-RLGRQELDGELVEERPGALWSRDRIEQCFEEN--PPP 215 Query: 315 YAPLIMGCDI---AGEGGDKTVVVF 336 A +++ D +G+ D +V Sbjct: 216 LARIVVAVDPPASSGKASDACGIVV 240 >gi|17987633|ref|NP_540267.1| Phage DNA packaging protein [Brucella melitensis bv. 1 str. 16M] gi|260563648|ref|ZP_05834134.1| ATP/GTP-binding site-containing protein A [Brucella melitensis bv. 1 str. 16M] gi|260566826|ref|ZP_05837296.1| ATP/GTP-binding site-containing protein A [Brucella suis bv. 4 str. 40] gi|261219037|ref|ZP_05933318.1| phage DNA Packaging protein [Brucella ceti M13/05/1] gi|261221792|ref|ZP_05936073.1| phage DNA Packaging protein [Brucella ceti B1/94] gi|261321463|ref|ZP_05960660.1| phage DNA Packaging protein [Brucella ceti M644/93/1] gi|261324708|ref|ZP_05963905.1| phage DNA Packaging protein [Brucella neotomae 5K33] gi|261751918|ref|ZP_05995627.1| phage DNA Packaging protein [Brucella suis bv. 5 str. 513] gi|261754576|ref|ZP_05998285.1| phage DNA Packaging protein [Brucella suis bv. 3 str. 686] gi|265990705|ref|ZP_06103262.1| phage DNA Packaging protein [Brucella melitensis bv. 1 str. Rev.1] gi|265994537|ref|ZP_06107094.1| phage DNA Packaging protein [Brucella melitensis bv. 3 str. Ether] gi|265997756|ref|ZP_06110313.1| phage DNA Packaging protein [Brucella ceti M490/95/1] gi|265999560|ref|ZP_05466908.2| ATP/GTP-binding site domain-containing protein A [Brucella melitensis bv. 2 str. 63/9] gi|17983344|gb|AAL52531.1| phage DNA packaging protein [Brucella melitensis bv. 1 str. 16M] gi|260153664|gb|EEW88756.1| ATP/GTP-binding site-containing protein A [Brucella melitensis bv. 1 str. 16M] gi|260156344|gb|EEW91424.1| ATP/GTP-binding site-containing protein A [Brucella suis bv. 4 str. 40] gi|260920376|gb|EEX87029.1| phage DNA Packaging protein [Brucella ceti B1/94] gi|260924126|gb|EEX90694.1| phage DNA Packaging protein [Brucella ceti M13/05/1] gi|261294153|gb|EEX97649.1| phage DNA Packaging protein [Brucella ceti M644/93/1] gi|261300688|gb|EEY04185.1| phage DNA Packaging protein [Brucella neotomae 5K33] gi|261741671|gb|EEY29597.1| phage DNA Packaging protein [Brucella suis bv. 5 str. 513] gi|261744329|gb|EEY32255.1| phage DNA Packaging protein [Brucella suis bv. 3 str. 686] gi|262552224|gb|EEZ08214.1| phage DNA Packaging protein [Brucella ceti M490/95/1] gi|262765650|gb|EEZ11439.1| phage DNA Packaging protein [Brucella melitensis bv. 3 str. Ether] gi|263001489|gb|EEZ14064.1| phage DNA Packaging protein [Brucella melitensis bv. 1 str. Rev.1] gi|263094670|gb|EEZ18449.1| ATP/GTP-binding site domain-containing protein A [Brucella melitensis bv. 2 str. 63/9] Length = 430 Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 38/295 (12%), Positives = 78/295 (26%), Gaps = 39/295 (13%) Query: 56 LEFMEAVDVHCHSNVNNSNPTI--FKCA-ISAGRGIGKTTLNAWMMLWLISTRPG----- 107 + + A D + P ++ I GRG GKT A + + P Sbjct: 17 RQILAAQDEWLIRARDAQLPPDGDWRVWLIMGGRGSGKTRAGAEWVSGMALGLPPFAGKP 76 Query: 108 -MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 I + + + + S LS+ ++ Sbjct: 77 SGHIALVGETFNDAREVMVDGPSGILSVSRL-VRPRYEASRRRL---------------- 119 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFW 224 + + A + DE + P + + R Sbjct: 120 --IWDNGAVATLFSSEDPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPR-Q 176 Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 ++T+ R + + + GF + I RY + R E+ Sbjct: 177 VVTTTPRAV--PLLKALLTDRTVSMTHMRTAENAGNLAEGFMQTIARRYAGT-RLGRQEL 233 Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVVVF 336 G+ ++ + IE+ A +++ D +G+ D +V Sbjct: 234 DGELVEERPGALWSRDRIEQCFEEN--PPPLARIVVAVDPPASSGKASDACGIVV 286 >gi|254471818|ref|ZP_05085219.1| phage DNA Packaging Protein [Pseudovibrio sp. JE062] gi|211959020|gb|EEA94219.1| phage DNA Packaging Protein [Pseudovibrio sp. JE062] Length = 428 Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 29/265 (10%), Positives = 65/265 (24%), Gaps = 38/265 (14%) Query: 82 ISAGRGIGKTTLNAWMML-------WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 + GRG GKT + W + P +I + + ++ + +S L++ Sbjct: 45 LMGGRGAGKTRAGVEWVRGKTAGEPW--AGPPAGNIALVGQTYADVREVMIEGISGLLAV 102 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 P + + A Sbjct: 103 HPPNQKPQWNPSRRRLE------------------WPNGAIARAFSSEDPEALRGPQFDA 144 Query: 195 VFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252 + DEA + + + + T + + Sbjct: 145 AWCDEAGKWSNATETFDMLQFGLRLGTQPQQLV---TTTPKSTPLLKMLLQDQRVVVTKA 201 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + F + + RYG + R E+ G+ + + + E R Sbjct: 202 GTKSNAAFLAEAFLQQMAERYGGT-RLGRQELDGELIEDREDALFARKWFEMNRVRHVP- 259 Query: 313 DLYAPLIMGCDI---AGEGGDKTVV 334 +++ D +G+ D + Sbjct: 260 -ELKRIVVAIDPPATSGKSADACGI 283 >gi|62181180|ref|YP_217597.1| hypothetical protein SC2610 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62128813|gb|AAX66516.1| orf, partial conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715669|gb|EFZ07240.1| hypothetical protein SCA50_2790 [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 540 Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 42/356 (11%), Positives = 88/356 (24%), Gaps = 24/356 (6%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIKGKPLEHFSQPHRWQL 56 P + + L + H E + + K F WG+ P Sbjct: 12 PDYQMVFEWRMERLQRIRQHPEMLPALKQFYRTNPAQFIIDWGMTTDPRNIDYGLPVTIP 71 Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 + + R +G + M L M I + Sbjct: 72 FLLFPKQEEWVHWIMERWGKRENGITEKSREMGLSWTAIGMACSLCLFNKEMVIGFGSRK 131 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 E + ++ + + ++ +A + Sbjct: 132 EEYV-DSTGDPKALFWKARKFVETLPVEFRGSWNEKKHAPYMRVEFP---------ETGA 181 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236 + DEA+ + T I S+ + Sbjct: 182 VIKGEAGDNIGRGDRTTLYLVDEAAFLQRPLLIDAALSQTTRCR----IDLSSVNGMANP 237 Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 F + + R+ D ++ + + V E+ + Sbjct: 238 FAQKRHGGK--IPVFTFHWRSDPRKDDEWYRRECEKI-DNPVVVAQELDLNYSASAEGVL 294 Query: 297 IPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350 IP ++++ A+ + D+A EG DK R G ++E++ +WS Sbjct: 295 IPSDWVQAAVDAHIRLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSG 350 >gi|192291432|ref|YP_001992037.1| phage terminase, large subunit, PBSX family [Rhodopseudomonas palustris TIE-1] gi|192285181|gb|ACF01562.1| phage terminase, large subunit, PBSX family [Rhodopseudomonas palustris TIE-1] Length = 421 Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 36/249 (14%), Positives = 61/249 (24%), Gaps = 26/249 (10%) Query: 84 AGRGIGKTTLNAWMM----LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 GRG GKT A M + I+C L ++ +AEV Sbjct: 7 GGRGSGKTRTFAKMSAVRGIDFAQAGMDGVIVCGREFMNSLADSSFAEVK---------- 56 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 ++ + W AE + + R + ++ DE Sbjct: 57 ------AAILSTPWLAERYDVGDTYIRTKCRRIIFVFVGLRHNLDSIKSKARIRLLWVDE 110 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRYQIDTRTV 258 A D + E W+ N R F P K +++ R Sbjct: 111 AEPVSDEAWNITIPTVREEGSE-IWLTW-NPDRKASATNKRFRENPPAGAKIVELNWRDN 168 Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI---EEAMSREAIDDLY 315 + + D G++ + E+ D Sbjct: 169 PYFPEILNRTRLDDKANRPDQYGWVWEGEYRSVVAGAYYAKALTQAKEQGRITFVPLDPL 228 Query: 316 APLIMGCDI 324 + DI Sbjct: 229 MQVRAYLDI 237 >gi|9632855|ref|NP_049779.1| gp17'' unknown function [Enterobacteria phage T4] gi|5354479|gb|AAD42686.1|AF158101_273 gp17'' unknown function [Enterobacteria phage T4] gi|299780524|gb|ADJ39886.1| gp17'' [Enterobacteria phage T4T] Length = 416 Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 29/226 (12%), Positives = 57/226 (25%), Gaps = 33/226 (14%) Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 R ++ L E + S+ +D+ + ++ Sbjct: 7 DRTKQAIELLPDFLQPGIVEWNKGSIELDNGSSI-------GAYASSPDAVRGNSFAMIY 59 Query: 197 NDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED------- 247 DE + P+ +I + ++ I+ + T FYDI+ +E Sbjct: 60 IDECAFIPNFHDSWLAIQPVISSGRRSK--IIITTTPNGLNHFYDIWTAAVEGKSGFEPY 117 Query: 248 ---WKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI- 302 W + + D G+ I + G R E F Sbjct: 118 TAIWNSVKERLYNDEDIFDDGWQWSIQTINGSSLAQFRQEHTAAFEGTSGTLISGMKLAV 177 Query: 303 ---------EEAMSREAIDDLYAPLIMGCDIA-GEGGDKTVVVFRR 338 + + + I D + G G D + Sbjct: 178 MDFIEVTPDDHGFHQFKKPEPDRKYIATLDCSEGRGQDYHALHIID 223 >gi|261317250|ref|ZP_05956447.1| phage DNA Packaging protein [Brucella pinnipedialis B2/94] gi|265988289|ref|ZP_06100846.1| phage DNA Packaging protein [Brucella pinnipedialis M292/94/1] gi|261296473|gb|EEX99969.1| phage DNA Packaging protein [Brucella pinnipedialis B2/94] gi|264660486|gb|EEZ30747.1| phage DNA Packaging protein [Brucella pinnipedialis M292/94/1] Length = 430 Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 70/266 (26%), Gaps = 36/266 (13%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSML 135 I GRG GKT A + + P I + + + + S LS+ Sbjct: 46 IMGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVS 105 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 ++ + + A Sbjct: 106 RL-VRPRYEASRRRL------------------IWDNGAVATLFSSEDPDSLRGPQFDAA 146 Query: 196 FNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253 + DE + P + + R ++T+ R + + Sbjct: 147 WCDELAKWKNPQETWDMLQFGLRLGDNPR-QVVTTTPRAV--PLLKALLTDRTVSMTHMR 203 Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 + GF + I RY + R E+ G+ ++ + IE+ Sbjct: 204 TAENAGNLAEGFMQTIARRYAGT-RLGRQELDGELVEERPGALWSRDRIEQCFEEN--PP 260 Query: 314 LYAPLIMGCDI---AGEGGDKTVVVF 336 A +++ D +G+ D +V Sbjct: 261 PLARIVVAVDPPASSGKASDACGIVV 286 >gi|254709718|ref|ZP_05171529.1| Phage DNA packaging protein [Brucella pinnipedialis B2/94] gi|256031209|ref|ZP_05444823.1| Phage DNA packaging protein [Brucella pinnipedialis M292/94/1] Length = 411 Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 70/266 (26%), Gaps = 36/266 (13%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSML 135 I GRG GKT A + + P I + + + + S LS+ Sbjct: 27 IMGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVS 86 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 ++ + + A Sbjct: 87 RL-VRPRYEASRRRL------------------IWDNGAVATLFSSEDPDSLRGPQFDAA 127 Query: 196 FNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253 + DE + P + + R ++T+ R + + Sbjct: 128 WCDELAKWKNPQETWDMLQFGLRLGDNPR-QVVTTTPRAV--PLLKALLTDRTVSMTHMR 184 Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 + GF + I RY + R E+ G+ ++ + IE+ Sbjct: 185 TAENAGNLAEGFMQTIARRYAGT-RLGRQELDGELVEERPGALWSRDRIEQCFEEN--PP 241 Query: 314 LYAPLIMGCDI---AGEGGDKTVVVF 336 A +++ D +G+ D +V Sbjct: 242 PLARIVVAVDPPASSGKASDACGIVV 267 >gi|194445851|ref|YP_002040314.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404514|gb|ACF64736.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 540 Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 42/356 (11%), Positives = 88/356 (24%), Gaps = 24/356 (6%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIKGKPLEHFSQPHRWQL 56 P + + L + H E + + K F WG+ P Sbjct: 12 PDYQMVFEWRMERLQRIRQHPEMLPALKQFYRTNPAQFIIDWGMTTDPRNIDYGLPVTIP 71 Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 + + R +G + M L M I + Sbjct: 72 FLLFPKQEEWIHWIMERWGKRENGITEKSREMGLSWTAIGMACSLCLFNKEMVIGFGSRK 131 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 E + ++ + + ++ +A + Sbjct: 132 EEYV-DSTGDPKALFWKARKFVETLPVEFRGSWNEKKHAPYMRVEFP---------ETGA 181 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236 + DEA+ + T I S+ + Sbjct: 182 VIKGEAGDNIGRGDRTTLYLVDEAAFLQRPLLIDAALSQTTRCR----IDLSSVNGMANP 237 Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 F + + R+ D ++ + + V E+ + Sbjct: 238 FAQKRHGGK--IPVFTFHWRSDPRKDDEWYRRECEKI-DNPVVVAQELDLNYSASAEGVL 294 Query: 297 IPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350 IP ++++ A+ + D+A EG DK R G ++E++ +WS Sbjct: 295 IPSDWVQAAVDAHIRLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSG 350 >gi|261213600|ref|ZP_05927881.1| phage DNA Packaging protein [Brucella abortus bv. 3 str. Tulya] gi|260915207|gb|EEX82068.1| phage DNA Packaging protein [Brucella abortus bv. 3 str. Tulya] Length = 426 Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 37/295 (12%), Positives = 74/295 (25%), Gaps = 39/295 (13%) Query: 56 LEFMEAVDVHCHSNVNNSNPTI--FKCA-ISAGRGIGKTTLNAWMMLWLISTRPG----- 107 + + A D + P ++ I GRG GKT A + + P Sbjct: 17 RQILAAQDEWLIRARDAQLPPDGDWRVWLIMGGRGSGKTRAGAEWVSGMALGLPPFAGKP 76 Query: 108 -MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 I + + + + S LS+ ++ Sbjct: 77 SGHIALVGETFNDAREMMVDGPSGILSVSRL-VRPRYEASRRRL---------------- 119 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFW 224 + + A + DE + P + + R Sbjct: 120 --IWDNGAVATLFSSEDPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQV 177 Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 + T + + GF + I RY + R E+ Sbjct: 178 V---TTTPRAVPLLKALLTDRTVSMTHMRTAENAGNLAEGFMQTIARRYAGT-RLGRQEL 233 Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVVVF 336 G+ ++ + IE+ A +++ D +G+ D +V Sbjct: 234 DGELVEERPGALWSRDRIEQCFEEN--PPPLARIVVAVDPPASSGKASDACGIVV 286 >gi|192290494|ref|YP_001991099.1| hypothetical protein Rpal_2102 [Rhodopseudomonas palustris TIE-1] gi|192284243|gb|ACF00624.1| protein of unknown function DUF264 [Rhodopseudomonas palustris TIE-1] Length = 386 Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 40/264 (15%), Positives = 71/264 (26%), Gaps = 35/264 (13%) Query: 82 ISAGRGIGKTTLNAWMMLWLI------STRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 + GRG GKT A + ++ +TRP I + S + + S L + Sbjct: 1 MLGGRGAGKTRAGAEWVRAMVAGTPPYATRPHGRIALVGESWHDAREVMVEGESGLLRIT 60 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 P R E + D A Sbjct: 61 PRRERPEWIASRRRLQ------------------WPNGAVGEVFSADDPDSLRGPQFEAA 102 Query: 196 FNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253 + DE + + + R + + T R + P Sbjct: 103 WCDELAKWRYAEASFDMLQFGLRLGARPRQ--LITTTPRPLPLIKRLLADPHTR-VTRAP 159 Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 + F E +++RY R E+ G+ + + + IE A R A Sbjct: 160 TRANAAHLSPAFLETVVARYAGT-RQGRQELDGELIEDRPDALWSRDRIERA--RVAAAP 216 Query: 314 LYAPLIMGCDI---AGEGGDKTVV 334 +++ D + G D + Sbjct: 217 PLVRIVVAIDPPGSSRPGADACGI 240 >gi|226940437|ref|YP_002795511.1| Terminase large subunit [Laribacter hongkongensis HLHK9] gi|226715364|gb|ACO74502.1| Terminase large subunit [Laribacter hongkongensis HLHK9] Length = 133 Score = 77.7 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 54/143 (37%), Gaps = 11/143 (7%) Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + AN++TQL+ EV KW + HWF+ QS S+ +K + Sbjct: 1 MITANTDTQLRTKTSPEVGKWQRLSITSHWFDPQSASIAARD----------KEHAKTWR 50 Query: 171 ITCRTYSEERPDTFVGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 +SE + F G HN + + DEAS D + + G T+ WI N Sbjct: 51 ADFVPWSEHNTEAFAGLHNKGKRIVLIFDEASAIADKVWEVAEGALTDEETEIIWIAFGN 110 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQ 252 R G F + F Q Sbjct: 111 PTRNIGRFRECFRRFRHSGWIIQ 133 >gi|260754354|ref|ZP_05866702.1| phage DNA Packaging protein [Brucella abortus bv. 6 str. 870] gi|260674462|gb|EEX61283.1| phage DNA Packaging protein [Brucella abortus bv. 6 str. 870] Length = 426 Score = 77.7 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 37/295 (12%), Positives = 74/295 (25%), Gaps = 39/295 (13%) Query: 56 LEFMEAVDVHCHSNVNNSNPTI--FKCA-ISAGRGIGKTTLNAWMMLWLISTRPG----- 107 + + A D + P ++ I GRG GKT A + + P Sbjct: 17 RQILAAQDEWLIRARDAQLPPDGDWRVWLIMGGRGSGKTRAGAEWVSGMALGLPPFAGKP 76 Query: 108 -MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 I + + + + S LS+ ++ Sbjct: 77 SGHIALVGETFNDAREVMVDGPSGILSVSRL-VRPRYEASRRRL---------------- 119 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFW 224 + + A + DE + P + + R Sbjct: 120 --IWDNGAVATLFSSEDPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQV 177 Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 + T + + GF + I RY + R E+ Sbjct: 178 V---TTTPRAVPLLKALLTDRTVSMTHMRTAENAGNLAEGFMQTIARRYAGT-RLGRQEL 233 Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVVVF 336 G+ ++ + IE+ A +++ D +G+ D +V Sbjct: 234 DGELVEERPGALWSRDRIEQCFEEN--PPPLARIVVAVDPPASSGKASDACGIVV 286 >gi|260545691|ref|ZP_05821432.1| ATP/GTP-binding site-containing protein A [Brucella abortus NCTC 8038] gi|260757573|ref|ZP_05869921.1| phage DNA Packaging protein [Brucella abortus bv. 4 str. 292] gi|260761398|ref|ZP_05873741.1| phage DNA Packaging protein [Brucella abortus bv. 2 str. 86/8/59] gi|260883379|ref|ZP_05894993.1| phage DNA Packaging protein [Brucella abortus bv. 9 str. C68] gi|260097098|gb|EEW80973.1| ATP/GTP-binding site-containing protein A [Brucella abortus NCTC 8038] gi|260667891|gb|EEX54831.1| phage DNA Packaging protein [Brucella abortus bv. 4 str. 292] gi|260671830|gb|EEX58651.1| phage DNA Packaging protein [Brucella abortus bv. 2 str. 86/8/59] gi|260872907|gb|EEX79976.1| phage DNA Packaging protein [Brucella abortus bv. 9 str. C68] Length = 426 Score = 77.7 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 37/295 (12%), Positives = 74/295 (25%), Gaps = 39/295 (13%) Query: 56 LEFMEAVDVHCHSNVNNSNPTI--FKCA-ISAGRGIGKTTLNAWMMLWLISTRPG----- 107 + + A D + P ++ I GRG GKT A + + P Sbjct: 17 RQILAAQDEWLIRARDAQLPPDGDWRVWLIMGGRGSGKTRAGAEWVSGMALGLPPFAGKP 76 Query: 108 -MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 I + + + + S LS+ ++ Sbjct: 77 SGHIALVGETFNDAREVMVDGPSGILSVSRL-VRPRYEASRRRL---------------- 119 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFW 224 + + A + DE + P + + R Sbjct: 120 --IWDNGAVATLFSSEDPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQV 177 Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 + T + + GF + I RY + R E+ Sbjct: 178 V---TTTPRAVPLLKALLTDRTVSMTHMRTAENAGNLAEGFMQTIARRYAGT-RLGRQEL 233 Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVVVF 336 G+ ++ + IE+ A +++ D +G+ D +V Sbjct: 234 DGELVEERPGALWSRDRIEQCFEEN--PPPLARIVVAVDPPASSGKASDACGIVV 286 >gi|306838714|ref|ZP_07471549.1| Phage DNA packaging protein [Brucella sp. NF 2653] gi|306406201|gb|EFM62445.1| Phage DNA packaging protein [Brucella sp. NF 2653] Length = 430 Score = 77.7 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 38/295 (12%), Positives = 78/295 (26%), Gaps = 39/295 (13%) Query: 56 LEFMEAVDVHCHSNVNNSNPTI--FKCA-ISAGRGIGKTTLNAWMMLWLISTRPG----- 107 + + A D + P ++ I GRG GKT A + + P Sbjct: 17 RQILAAQDEWLIRARDAQLPPDGDWRVWLIMGGRGSGKTRAGAEWVSGMALGLPPFAGKP 76 Query: 108 -MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 I + + + + S LS+ ++ Sbjct: 77 SGHIALVGETFNDAREVMVDGPSGILSVSRL-VRPRYEASRRRL---------------- 119 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFW 224 + + A + DE + P + + R Sbjct: 120 --IWDNGAVATLFSSEDPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPR-Q 176 Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 ++T+ R + + + GF + I RY + R E+ Sbjct: 177 VVTTTPRAV--PLLKALLTDRTVSMTHMRTVENAGNLAEGFMQTIARRYAGT-RLGRQEL 233 Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVVVF 336 G+ ++ + IE+ A +++ D +G+ D +V Sbjct: 234 DGELVEERPGALWSRDRIEQCFEEN--PPPLARIVVAVDPPASSGKASDACGIVV 286 >gi|167993618|ref|ZP_02574712.1| gp33 TerL [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205328294|gb|EDZ15058.1| gp33 TerL [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] Length = 539 Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 42/356 (11%), Positives = 88/356 (24%), Gaps = 24/356 (6%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIKGKPLEHFSQPHRWQL 56 P + + L + H E + + K F WG+ P Sbjct: 12 PDYQMVFEWRMERLQRIRQHPEMLPALKQFYRTNPAQFIIDWGMTTDPRNIDYGLPVTIP 71 Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 + + R +G + M L M I + Sbjct: 72 FLLFPKQEEWIHWIMERWGKRENGITEKSREMGLSWTAIGMACSLCLFNKEMVIGFGSRK 131 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 E + ++ + + ++ +A + Sbjct: 132 EEYV-DSTGDPKALFWKARKFVETLPVEFRGSWNEKKHAPYMRVEFP---------ETGA 181 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236 + DEA+ + T I S+ + Sbjct: 182 VIKGEAGDNIGRGDRTTLYLVDEAAFLQRPLLIDAALSQTTRCR----IDLSSVNGMANP 237 Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 F + + R+ D ++ + + V E+ + Sbjct: 238 FAQKRHGGK--IPVFTFHWRSDPRKDDEWYRRECEKI-DNPVVVAQELDLNYSASAEGVL 294 Query: 297 IPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350 IP ++++ A+ + D+A EG DK R G ++E++ +WS Sbjct: 295 IPSDWVQAAVDAHIRLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSG 350 >gi|161618560|ref|YP_001592447.1| hypothetical protein BCAN_A0599 [Brucella canis ATCC 23365] gi|225852113|ref|YP_002732346.1| hypothetical protein BMEA_A0624 [Brucella melitensis ATCC 23457] gi|254701380|ref|ZP_05163208.1| Phage DNA packaging protein [Brucella suis bv. 5 str. 513] gi|254703925|ref|ZP_05165753.1| Phage DNA packaging protein [Brucella suis bv. 3 str. 686] gi|254713724|ref|ZP_05175535.1| Phage DNA packaging protein [Brucella ceti M644/93/1] gi|254717218|ref|ZP_05179029.1| Phage DNA packaging protein [Brucella ceti M13/05/1] gi|256044294|ref|ZP_05447198.1| Phage DNA packaging protein [Brucella melitensis bv. 1 str. Rev.1] gi|256060717|ref|ZP_05450881.1| Phage DNA packaging protein [Brucella neotomae 5K33] gi|256113127|ref|ZP_05454004.1| Phage DNA packaging protein [Brucella melitensis bv. 3 str. Ether] gi|256159312|ref|ZP_05457102.1| Phage DNA packaging protein [Brucella ceti M490/95/1] gi|256254617|ref|ZP_05460153.1| Phage DNA packaging protein [Brucella ceti B1/94] gi|161335371|gb|ABX61676.1| protein of unknown function DUF264 [Brucella canis ATCC 23365] gi|225640478|gb|ACO00392.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457] gi|326408609|gb|ADZ65674.1| Phage DNA packaging protein [Brucella melitensis M28] gi|326538330|gb|ADZ86545.1| conserved hypothetical protein [Brucella melitensis M5-90] Length = 411 Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 34/266 (12%), Positives = 66/266 (24%), Gaps = 36/266 (13%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSML 135 I GRG GKT A + + P I + + + + S LS+ Sbjct: 27 IMGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVS 86 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 ++ + + A Sbjct: 87 RL-VRPRYEASRRRL------------------IWDNGAVATLFSSEDPDSLRGPQFDAA 127 Query: 196 FNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253 + DE + P + + R + T + Sbjct: 128 WCDELAKWKNPQETWDMLQFGLRLGDNPRQVV---TTTPRAVPLLKALLTDRTVSMTHMR 184 Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 + GF + I RY + R E+ G+ ++ + IE+ Sbjct: 185 TAENAGNLAEGFMQTIARRYAGT-RLGRQELDGELVEERPGALWSRDRIEQCFEEN--PP 241 Query: 314 LYAPLIMGCDI---AGEGGDKTVVVF 336 A +++ D +G+ D +V Sbjct: 242 PLARIVVAVDPPASSGKASDACGIVV 267 >gi|331650684|ref|ZP_08351739.1| conserved hypothetical protein [Escherichia coli M605] gi|331040472|gb|EGI12647.1| conserved hypothetical protein [Escherichia coli M605] Length = 414 Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 31/267 (11%), Positives = 68/267 (25%), Gaps = 19/267 (7%) Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 R +G + + L M I + E + ++ + + ++ Sbjct: 47 REMGLSWTAIGLACSLCLFNKEMVIGFGSRKEEYV-DSTGDPKALFWKARKFVETLPVEF 105 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 +A + + DEA+ Sbjct: 106 RGSWSEKKHAPYMRVEFP---------ETGAVIKGEAGDNIGRGDRTTLYLVDEAAFLQR 156 Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265 + T I S+ + F + + R D + Sbjct: 157 PLLIDAALSQTTRCR----IDLSSVNGMANPFAQKRHGGK--IPVFTFHWRDDPRKDEEW 210 Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCD 323 + + + V E+ + IP +++ + + D Sbjct: 211 YRRECEKI-DNPVVVAQELDLNYSASAEGVLIPSEWVQATVDAHIKLGIQPTGKRLGAMD 269 Query: 324 IAGEGGDKTVVVFRRGNIIEHIFDWSA 350 +A EG DK R G ++E++ +WS Sbjct: 270 VADEGRDKNAFSTRHGFLLENVREWSG 296 >gi|265983712|ref|ZP_06096447.1| terminase large subunit [Brucella sp. 83/13] gi|264662304|gb|EEZ32565.1| terminase large subunit [Brucella sp. 83/13] Length = 384 Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 34/265 (12%), Positives = 69/265 (26%), Gaps = 36/265 (13%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSMLP 136 GRG GKT A + + P I + + + + S LS+ Sbjct: 1 MGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVSR 60 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 ++ + + A + Sbjct: 61 L-VRPRYEASRRRL------------------IWDNGAVATLFSSEDPDSLRGPQFDAAW 101 Query: 197 NDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254 DE + P + + R ++T+ R + + Sbjct: 102 CDELAKWKNPQETWDMLQFGLRLGDNPR-QVVTTTPRAV--PLLKALLTDRTVSMTHMRT 158 Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314 + GF + I RY + R E+ G+ ++ + IE+ Sbjct: 159 VENAGNLAEGFMQTIARRYAGT-RLGRQELDGELVEERPGALWSRDRIEQCFEEN--PPP 215 Query: 315 YAPLIMGCDI---AGEGGDKTVVVF 336 A +++ D +G+ D +V Sbjct: 216 LARIVVAVDPPASSGKASDACGIVV 240 >gi|126739361|ref|ZP_01755054.1| terminase, large subunit, putative [Roseobacter sp. SK209-2-6] gi|126719461|gb|EBA16170.1| terminase, large subunit, putative [Roseobacter sp. SK209-2-6] Length = 433 Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 36/291 (12%), Positives = 70/291 (24%), Gaps = 35/291 (12%) Query: 81 AISAGRGIGKTTLNAWMML------WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 I GRG GKT A + +ST P + + + Q+++ + S L+ Sbjct: 40 VILGGRGAGKTRAGAEWVRCQIEGATPLSTGPSRRLALVGETYDQVRDVMIQGDSGILAC 99 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 P + ++ Sbjct: 100 SPKDRRPQWKAGERKL------------------LWANGAQAQAFSAHDPEALRGPQFDL 141 Query: 195 VFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252 + DE + + R I T N + + Sbjct: 142 AWLDELAKWKRGREAWDMLQFALRLGKDPRACI---TTTPRNSQILRDVLAQSSTVQTHA 198 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + F E + RY + R E+ G E A + Sbjct: 199 PTDANRANLAPSFLEEMKQRYAGT-RLGRQELEGCLLSDVEGALWSSA--ELAGQQCKEA 255 Query: 313 DLYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG 360 +++ D AG+ D ++ +W ++ + +G Sbjct: 256 PELDRIVVAVDPAVSAGKASDACGILVAGARHAGTPSEWETYVLADRTVQG 306 >gi|82699481|ref|YP_414055.1| ATP/GTP-binding domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|189023809|ref|YP_001934577.1| ATP/GTP-binding site motif A (P-loop) [Brucella abortus S19] gi|82615582|emb|CAJ10565.1| ATP/GTP-binding site motif A (P-loop) [Brucella melitensis biovar Abortus 2308] gi|189019381|gb|ACD72103.1| ATP/GTP-binding site motif A (P-loop) [Brucella abortus S19] Length = 380 Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 34/265 (12%), Positives = 69/265 (26%), Gaps = 36/265 (13%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSMLP 136 GRG GKT A + + P I + + + + S LS+ Sbjct: 1 MGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVSR 60 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 ++ + + A + Sbjct: 61 L-VRPRYEASRRRL------------------IWDNGAVATLFSSEDPDSLRGPQFDAAW 101 Query: 197 NDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254 DE + P + + R ++T+ R + + Sbjct: 102 CDELAKWKNPQETWDMLQFGLRLGDNPR-QVVTTTPRAV--PLLKALLTDRTVSMTHMRT 158 Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314 + GF + I RY + R E+ G+ ++ + IE+ Sbjct: 159 AENAGNLAEGFMQTIARRYAGT-RLGRQELDGELVEERPGALWSRDRIEQCFEEN--PPP 215 Query: 315 YAPLIMGCDI---AGEGGDKTVVVF 336 A +++ D +G+ D +V Sbjct: 216 LARIVVAVDPPASSGKASDACGIVV 240 >gi|254693351|ref|ZP_05155179.1| Phage DNA packaging protein [Brucella abortus bv. 3 str. Tulya] Length = 407 Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 34/266 (12%), Positives = 66/266 (24%), Gaps = 36/266 (13%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSML 135 I GRG GKT A + + P I + + + + S LS+ Sbjct: 27 IMGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREMMVDGPSGILSVS 86 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 ++ + + A Sbjct: 87 RL-VRPRYEASRRRL------------------IWDNGAVATLFSSEDPDSLRGPQFDAA 127 Query: 196 FNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253 + DE + P + + R + T + Sbjct: 128 WCDELAKWKNPQETWDMLQFGLRLGDNPRQVV---TTTPRAVPLLKALLTDRTVSMTHMR 184 Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 + GF + I RY + R E+ G+ ++ + IE+ Sbjct: 185 TAENAGNLAEGFMQTIARRYAGT-RLGRQELDGELVEERPGALWSRDRIEQCFEEN--PP 241 Query: 314 LYAPLIMGCDI---AGEGGDKTVVVF 336 A +++ D +G+ D +V Sbjct: 242 PLARIVVAVDPPASSGKASDACGIVV 267 >gi|149185407|ref|ZP_01863723.1| hypothetical protein ED21_20319 [Erythrobacter sp. SD-21] gi|148830627|gb|EDL49062.1| hypothetical protein ED21_20319 [Erythrobacter sp. SD-21] Length = 444 Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 42/303 (13%), Positives = 81/303 (26%), Gaps = 39/303 (12%) Query: 43 KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102 E P+ W+ + + + AGRG GKT A +L Sbjct: 27 TAEERAEWPYHWRRQA--------RESQRAPEGDWQTWLVMAGRGFGKTRAGAEWVLETA 78 Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162 P I + S +++ + S L+ P W A + S+ Sbjct: 79 EADPFARIALVGASLGEVRAVMVEGESGILACSP---------------PWRAPDYQPSL 123 Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII------NKSILGFFT 216 + + DE + + ++L Sbjct: 124 RT---VHFPNGAQAFLYSAAESESLRGPQHSHAWCDEVAKWSNSHERASRSWDNLLLGLR 180 Query: 217 ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR--TVEGIDSGFHEGIISRYG 274 R T R + + + + F + + +G Sbjct: 181 LGKDQRIMAT--TTPRSVPLLRRLLDAERTHGLVLTGGATRDNAANLPTKFLAAMDAEFG 238 Query: 275 LDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD-IAGEGGDKTV 333 +S + E+ G ++ +E+ A DD +++G D A GD+ Sbjct: 239 -NSALGLQELDGLLLEEIEGALWSRALLEQRRGACAEDD-LRRVVVGVDPPASAHGDECG 296 Query: 334 VVF 336 +V Sbjct: 297 IVV 299 >gi|254437946|ref|ZP_05051440.1| conserved hypothetical protein [Octadecabacter antarcticus 307] gi|198253392|gb|EDY77706.1| conserved hypothetical protein [Octadecabacter antarcticus 307] Length = 441 Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 37/319 (11%), Positives = 77/319 (24%), Gaps = 36/319 (11%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAI-SAGRGIGKTTLNAWMMLWLISTRPG------ 107 QL+ + + + + ++ + GRG GKT A + ++ Sbjct: 21 QLKALPYLFEFWALDHQLAPEGDWRTWVILGGRGAGKTRAGAEWVRSMVEGSRPRDPGIA 80 Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 + I + Q + + S L+ P + S Sbjct: 81 KHVGLIGETMEQAREVMVFGTSGILACSPPDRRPQWISGRNLL----------------- 123 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWI 225 AV+ DE + P + R + Sbjct: 124 -IWPNGAEARLYSAFDPERLRGPQFDAVWADELAKWPKAQSTWDMMQFGLRLGANPRACV 182 Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285 T + + F + + F + + RY + R E+ Sbjct: 183 TT-TPKNVE--ILKDFMARKSTVHTHATTQANRAYLADSFLQEVQERYCGT-RLGRQELD 238 Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVVVFRRGNII 342 G +E +++ D A D +V Sbjct: 239 GVLLADVDGALWSSARLEAGHVT--KLPQMDRIVVAVDPPAGANATSDACGIVVAGIVSQ 296 Query: 343 EHIFDWSAKLIQETNQEGC 361 + W +I++ + +G Sbjct: 297 GPVSGWKIYVIEDASVQGV 315 >gi|183598507|ref|ZP_02960000.1| hypothetical protein PROSTU_01901 [Providencia stuartii ATCC 25827] gi|188020684|gb|EDU58724.1| hypothetical protein PROSTU_01901 [Providencia stuartii ATCC 25827] Length = 411 Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 37/285 (12%), Positives = 78/285 (27%), Gaps = 28/285 (9%) Query: 69 NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL----ISTRPGMSIICIANSETQLKNTL 124 V + ++ A GRG KT A M I+C L+ + Sbjct: 14 PVFENEGVRYRGAY-GGRGSAKTRTFALMTAIRGYMAAKNGQSGVILCAREYMNSLEESS 72 Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184 EV + + +P W + E ++ R + Sbjct: 73 MEEVKQAIRSVP----------------WLNDFYELGEKYIRTKCRSVSYVFAGLRHNLD 116 Query: 185 VGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244 + + DEA + + E W+ N + F Sbjct: 117 SIKSKARILIAWVDEAESVSETAWTKLTPTVREAGSE-IWVTW-NPEKDGSATDKRFRKK 174 Query: 245 L-EDWKRYQIDTRTVEGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYI 302 ++ +++ S E ++ D+ G + + + + Y+ Sbjct: 175 QPDNAIVVEMNYDDNPWFPSVLEEERLNDQARLDAATYAWIWEGAYLENSDKQVLANKYV 234 Query: 303 EEAMSREAIDDLYAPLIMGCDIAGEGGD-KTVVVFRRGNIIEHIF 346 ++ + + L+ G D G D T++ + +I Sbjct: 235 VQSF-PDDLWKKADRLLFGADF-GFAKDLNTLIRMFILDDCLYIE 277 >gi|114319955|ref|YP_741638.1| hypothetical protein Mlg_0794 [Alkalilimnicola ehrlichii MLHE-1] gi|114226349|gb|ABI56148.1| hypothetical protein Mlg_0794 [Alkalilimnicola ehrlichii MLHE-1] Length = 509 Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 34/294 (11%), Positives = 72/294 (24%), Gaps = 30/294 (10%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 A+ + + AGR KT A + ++L + A + L Sbjct: 44 ALFKRLSGDREPPQRQARELWAIAGRRSDKTHTAAGIAVYLAT--------IGAELDGTL 95 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 E + R ++ + + ++ + ++ + S E Sbjct: 96 ARLTAGERGVVQLLAVDRQQAKVALGYVRGLFADSPVMSSLVEKENTEGVLLRNGVSIEV 155 Query: 181 PDTFVG-PHNTHGMAVFNDEASGTPD--------IINKSILGFFTELNPNRFWIMTSNTR 231 +A DE + D + ++++ + S+ Sbjct: 156 ATNSHRAVRGRTLLAAILDECAFFKDEATATPDVEVYRALVPSLATTGG--MLVGISSPY 213 Query: 232 RLNGWFYDIFN----IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287 G Y + P + +D D + A+ E GQ Sbjct: 214 ARRGLLYSKWRKHYGKPGDVLVVQGGTLDFNPTLDPRVIAEAE---QDDPEAAKAEWHGQ 270 Query: 288 FPQQEVNNFIPHNYIEEAM---SREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338 F F+ ++ E D +G D + Sbjct: 271 FRADVEG-FVTREAVDACTAPGRIELPPVAGERYTAFVDPSGGSKDAFTLAIAH 323 >gi|114319804|ref|YP_741487.1| hypothetical protein Mlg_0643 [Alkalilimnicola ehrlichii MLHE-1] gi|114226198|gb|ABI55997.1| hypothetical protein Mlg_0643 [Alkalilimnicola ehrlichii MLHE-1] Length = 509 Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 34/294 (11%), Positives = 72/294 (24%), Gaps = 30/294 (10%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 A+ + + AGR KT A + ++L + A + L Sbjct: 44 ALFKRLSGDREPPQRQARELWAIAGRRSDKTHTAAGIAVYLAT--------IGAELDGTL 95 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 E + R ++ + + ++ + ++ + S E Sbjct: 96 ARLTAGERGVVQLLAVDRQQAKVALGYVRGLFADSPVMSSLVEKENTEGVLLRNGVSIEV 155 Query: 181 PDTFVG-PHNTHGMAVFNDEASGTPD--------IINKSILGFFTELNPNRFWIMTSNTR 231 +A DE + D + ++++ + S+ Sbjct: 156 ATNSHRAVRGRTLLAAILDECAFFKDEATATPDVEVYRALVPSLATTGG--MLVGISSPY 213 Query: 232 RLNGWFYDIFN----IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287 G Y + P + +D D + A+ E GQ Sbjct: 214 ARRGLLYSKWRKHYGKPGDVLVVQGGTLDFNPTLDPRVIAEAE---QDDPEAAKAEWHGQ 270 Query: 288 FPQQEVNNFIPHNYIEEAM---SREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338 F F+ ++ E D +G D + Sbjct: 271 FRADVEG-FVTREAVDACTVPARIELPPVAGERYTAFVDPSGGSKDAFTLAIAH 323 >gi|237815048|ref|ZP_04594046.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A] gi|254697001|ref|ZP_05158829.1| Phage DNA packaging protein [Brucella abortus bv. 2 str. 86/8/59] gi|254729902|ref|ZP_05188480.1| Phage DNA packaging protein [Brucella abortus bv. 4 str. 292] gi|256257118|ref|ZP_05462654.1| Phage DNA packaging protein [Brucella abortus bv. 9 str. C68] gi|237789885|gb|EEP64095.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A] Length = 407 Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 34/266 (12%), Positives = 66/266 (24%), Gaps = 36/266 (13%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSML 135 I GRG GKT A + + P I + + + + S LS+ Sbjct: 27 IMGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVS 86 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 ++ + + A Sbjct: 87 RL-VRPRYEASRRRL------------------IWDNGAVATLFSSEDPDSLRGPQFDAA 127 Query: 196 FNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253 + DE + P + + R + T + Sbjct: 128 WCDELAKWKNPQETWDMLQFGLRLGDNPRQVV---TTTPRAVPLLKALLTDRTVSMTHMR 184 Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 + GF + I RY + R E+ G+ ++ + IE+ Sbjct: 185 TAENAGNLAEGFMQTIARRYAGT-RLGRQELDGELVEERPGALWSRDRIEQCFEEN--PP 241 Query: 314 LYAPLIMGCDI---AGEGGDKTVVVF 336 A +++ D +G+ D +V Sbjct: 242 PLARIVVAVDPPASSGKASDACGIVV 267 >gi|273810556|ref|YP_003344937.1| gp2 [Sodalis phage SO-1] gi|258619841|gb|ACV84094.1| gp2 [Sodalis phage SO-1] Length = 461 Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 44/298 (14%), Positives = 84/298 (28%), Gaps = 30/298 (10%) Query: 44 PLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS 103 P +Q + + + +G G GK+ + A ++ L++ Sbjct: 24 PTRVAQAVRLYQPDCLPHQVELLRDTKTKILG------LCSGFGGGKSWVAARKVIQLLT 77 Query: 104 TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163 PG I + L ++ E+ K R F Q ++ + Sbjct: 78 LNPGHDGIVTEPTIPLLVKIMYPELEKAFDEAGFRWKFNKQ-DKIYSVLVKGKWTRV--- 133 Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223 E + + + + DE T + + F Sbjct: 134 -------------ICESMENYTRLIGVNAAWIVADEFDTTKQDVALAAYHKLLGRLRAGF 180 Query: 224 --WIMTSNTRRLNGWFYDIFNIPLE-DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280 + +T Y IF + + + + T + + F + + S+Y +++ Sbjct: 181 VRQFVIVSTPEGYRAMYQIFEVEKDSQKRLIRAKTTDNHHLPADFIDTLRSQY--PANLI 238 Query: 281 RIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338 + G F EE S E LI+G D VV RR Sbjct: 239 DAYLNGLFVNLTSGAVYKMFNREENASTE-EVQPEDTLIIGMDFNVT-KMAAVVYVRR 294 >gi|282857748|ref|ZP_06266957.1| DNA maturase B [Pyramidobacter piscolens W5455] gi|282584418|gb|EFB89777.1| DNA maturase B [Pyramidobacter piscolens W5455] Length = 591 Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 39/373 (10%), Positives = 86/373 (23%), Gaps = 83/373 (22%) Query: 27 SFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR 86 F+ F+ W P +P Q + + + + I A R Sbjct: 14 DFRAFLYVV--WKHLNLP-----EPTPLQ----YDIANYLQTGPK-------RKIIEAFR 55 Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQL---KNTLWAEVSKWLSMLPHRHWFEM 143 G+GK+ + + LW + P ++I+ ++ S+ + + + + P + F Sbjct: 56 GVGKSWITSAYALWRLYWNPQLNILVVSASKERADSFSTFTLRLIDEMGILSPLKPDFNK 115 Query: 144 QSLSLHPSGWYAELLEQSM---------GIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 + + G + E + ++ Sbjct: 116 GQRNSKIAFDVGPARASHAPSVKSVGIYGQLTGSRADVIIADDIEISNNSYTQMMRDKLS 175 Query: 195 VFNDEASGT--------------PDIINKSILGFFTELNPNRFWIM-TSNTRRLNGWFYD 239 E P + R W + + G+ Sbjct: 176 EAVKEFDAILKPADDAEITYLGTPQVEMSLYNALRDRGYSTRIWPARVPSAEKRIGYGDR 235 Query: 240 IFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG------QFPQQEV 293 + + + + YG + + +FP + Sbjct: 236 LAPYVAKMEDVGRTT--DPARFSDNDLREREASYGRSGFALQFMLDTTLSDAERFPLRLN 293 Query: 294 NNFI------------------------------PHNYIEEAMSREAIDDLYAPLIMGCD 323 + I + M + Y +M D Sbjct: 294 DLIILPLDKDMAPEKVVWSSGPELLIKDLASTGFAGDSFHRPMGIQGEFREYTGSVMFVD 353 Query: 324 IAGEGGDKTVVVF 336 +G G D+T Sbjct: 354 PSGRGMDETAYAV 366 >gi|254688870|ref|ZP_05152124.1| Phage DNA packaging protein [Brucella abortus bv. 6 str. 870] Length = 407 Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 34/266 (12%), Positives = 66/266 (24%), Gaps = 36/266 (13%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSML 135 I GRG GKT A + + P I + + + + S LS+ Sbjct: 27 IMGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVS 86 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 ++ + + A Sbjct: 87 RL-VRPRYEASRRRL------------------IWDNGAVATLFSSEDPDSLRGPQFDAA 127 Query: 196 FNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253 + DE + P + + R + T + Sbjct: 128 WCDELAKWKNPQETWDMLQFGLRLGDNPRQVV---TTTPRAVPLLKALLTDRTVSMTHMR 184 Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 + GF + I RY + R E+ G+ ++ + IE+ Sbjct: 185 TAENAGNLAEGFMQTIARRYAGT-RLGRQELDGELVEERPGALWSRDRIEQCFEEN--PP 241 Query: 314 LYAPLIMGCDI---AGEGGDKTVVVF 336 A +++ D +G+ D +V Sbjct: 242 PLARIVVAVDPPASSGKASDACGIVV 267 >gi|261757806|ref|ZP_06001515.1| ATP/GTP-binding site domain-containing protein A [Brucella sp. F5/99] gi|261737790|gb|EEY25786.1| ATP/GTP-binding site domain-containing protein A [Brucella sp. F5/99] Length = 430 Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 37/295 (12%), Positives = 78/295 (26%), Gaps = 39/295 (13%) Query: 56 LEFMEAVDVHCHSNVNNSNPTI--FKCA-ISAGRGIGKTTLNAWMMLWLISTRPG----- 107 + + A D + P ++ I GRG GKT A + + P Sbjct: 17 RQILAAQDEWLIRARDAQLPPDGDWRVWLIMGGRGSGKTRAGAEWVSGMALGLPPFAGKP 76 Query: 108 -MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 I + + + + S LS+ ++ Sbjct: 77 SGHIALVGETFNDAREVMVDGPSGILSVSRL-VRPRYEASRRRL---------------- 119 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFW 224 + + A + DE + P + + R Sbjct: 120 --IWDNGAVATLFSSEDPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPR-Q 176 Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 ++T+ R + + + GF + I RY + R ++ Sbjct: 177 VVTTTPRAV--PLLKALLTDRTVSMTHMRTAENAGNLAEGFMQTIARRYAGT-RLGRQKL 233 Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVVVF 336 G+ ++ + IE+ A +++ D +G+ D +V Sbjct: 234 DGELVEERPGALWSRDRIEQCFEEN--PPPLARIVVAVDPPASSGKASDACGIVV 286 >gi|254718736|ref|ZP_05180547.1| Phage DNA packaging protein [Brucella sp. 83/13] Length = 411 Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 70/266 (26%), Gaps = 36/266 (13%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSML 135 I GRG GKT A + + P I + + + + S LS+ Sbjct: 27 IMGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVS 86 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 ++ + + A Sbjct: 87 RL-VRPRYEASRRRL------------------IWDNGAVATLFSSEDPDSLRGPQFDAA 127 Query: 196 FNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253 + DE + P + + R ++T+ R + + Sbjct: 128 WCDELAKWKNPQETWDMLQFGLRLGDNPR-QVVTTTPRAV--PLLKALLTDRTVSMTHMR 184 Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 + GF + I RY + R E+ G+ ++ + IE+ Sbjct: 185 TVENAGNLAEGFMQTIARRYAGT-RLGRQELDGELVEERPGALWSRDRIEQCFEEN--PP 241 Query: 314 LYAPLIMGCDI---AGEGGDKTVVVF 336 A +++ D +G+ D +V Sbjct: 242 PLARIVVAVDPPASSGKASDACGIVV 267 >gi|238027682|ref|YP_002911913.1| gp2 [Burkholderia glumae BGR1] gi|237876876|gb|ACR29209.1| gp2 [Burkholderia glumae BGR1] Length = 489 Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 40/290 (13%), Positives = 75/290 (25%), Gaps = 40/290 (13%) Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 P K + GRG KT ++ ST+ I+C+ + ++ + A Sbjct: 60 QKLERLIYPKRLKI-VWGGRGSAKTRTIVSILTAQASTQRE-RILCLREVQNSIEESSHA 117 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 E+++ + F + + T + ++ + Sbjct: 118 ELAEEIERRDLGGSFVVGRKVIRV-----------------PATRSSFSFRGLYRNVTGV 160 Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL- 245 + DEA +L E I++ N R N + P Sbjct: 161 KGFAKATKAWVDEAENVSRESWDVLLPTIREPGSEI--IVSFNPNRENDPTWADLVGPYV 218 Query: 246 -----------EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294 D + + D D R LG+F ++ Sbjct: 219 DRLDEDGCYEDADTLIIRANYTDNPWFTEELELERAKMERTDLDRYRWIWLGKFNRRSDE 278 Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVV--VFRRGNII 342 + + G D G D T + + RGN + Sbjct: 279 LIFAGKW----RVEDIEAPPNTRFFFGAD-WGFAVDPTTLNRCWVRGNDL 323 >gi|254707699|ref|ZP_05169527.1| Phage DNA packaging protein [Brucella pinnipedialis M163/99/10] Length = 321 Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 34/266 (12%), Positives = 66/266 (24%), Gaps = 36/266 (13%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSML 135 I GRG GKT A + + P I + + + + S LS+ Sbjct: 27 IMGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVS 86 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 ++ + + A Sbjct: 87 RL-VRPRYEASRRRL------------------IWDNGAVATLFSSEDPDSLRGPQFDAA 127 Query: 196 FNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253 + DE + P + + R + T + Sbjct: 128 WCDELAKWKNPQETWDMLQFGLRLGDNPRQVV---TTTPRAVPLLKALLTDRTVSMTHMR 184 Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 + GF + I RY + R E+ G+ ++ + IE+ Sbjct: 185 TAENAGNLAEGFMQTIARRYAGT-RLGRQELDGELVEERPGALWSRDRIEQCFEEN--PP 241 Query: 314 LYAPLIMGCDI---AGEGGDKTVVVF 336 A +++ D +G+ D +V Sbjct: 242 PLARIVVAVDPPASSGKASDACGIVV 267 >gi|114766464|ref|ZP_01445429.1| terminase, large subunit, putative [Pelagibaca bermudensis HTCC2601] gi|114541321|gb|EAU44370.1| terminase, large subunit, putative [Roseovarius sp. HTCC2601] Length = 434 Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 39/296 (13%), Positives = 82/296 (27%), Gaps = 35/296 (11%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134 I GRG GKT A + + + + + Q++ + S L+ Sbjct: 40 VIMGGRGAGKTRAGAEWVRTCVEGALPLSPGRCRRVALVGETLDQVREVMVFGESGILAC 99 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 P + + G A Sbjct: 100 SPPDRRPDWHAGRRCL------------------VWPNGAEAMVFSAHDPEGLRGPQFDA 141 Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252 + DE + + + + T R G ++ + + Sbjct: 142 AWVDELAKWKKARETWDMLQFALRLGERPQVCVT--TTPRNVGVLKELLELDST-VVTHA 198 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + + F + +RYG ++ +AR E+ G +E A E Sbjct: 199 KTEANRANLAASFLREVRARYG-NTRLARQELDGVLVTDVDGTLWTQAVLERARGAEM-P 256 Query: 313 DLYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEG-CPVG 364 + + +++ D G+G D ++ W A ++++ + +G P G Sbjct: 257 ERFDRIVVAVDPPAGEGQGADACGILVAGAVCAGPPQAWRAWVLEDASVQGASPTG 312 >gi|188025504|ref|ZP_02997527.1| hypothetical protein PROSTU_00661 [Providencia stuartii ATCC 25827] gi|188023287|gb|EDU61327.1| hypothetical protein PROSTU_00661 [Providencia stuartii ATCC 25827] Length = 285 Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 37/285 (12%), Positives = 78/285 (27%), Gaps = 28/285 (9%) Query: 69 NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL----ISTRPGMSIICIANSETQLKNTL 124 V + ++ A GRG KT A M I+C L+ + Sbjct: 14 PVFENEGVRYRGAY-GGRGSAKTRTFALMTAIRGYMAAKNGQSGVILCAREYMNSLEESS 72 Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184 EV + + +P W + E ++ R + Sbjct: 73 MEEVKQAIRSVP----------------WLNDFYELGEKYIRTKCRSVSYVFAGLRHNLD 116 Query: 185 VGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244 + + DEA + + E W+ N + F Sbjct: 117 SIKSKARILIAWVDEAESVSETAWTKLTPTVREAGSE-IWVTW-NPEKDGSATDKRFRKK 174 Query: 245 L-EDWKRYQIDTRTVEGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYI 302 ++ +++ S E ++ D+ G + + + + Y+ Sbjct: 175 QPDNAIVVEMNYDDNPWFPSVLEEERLNDQARLDAATYAWIWEGAYLENSDKQVLANKYV 234 Query: 303 EEAMSREAIDDLYAPLIMGCDIAGEGGD-KTVVVFRRGNIIEHIF 346 ++ + + L+ G D G D T++ + +I Sbjct: 235 VQSF-PDDLWKKADRLLFGADF-GFAKDLNTLIRMFILDDCLYIE 277 >gi|319762771|ref|YP_004126708.1| prophage mumc02, terminase, atpase subunit, putative [Alicycliphilus denitrificans BC] gi|317117332|gb|ADU99820.1| prophage MuMc02, terminase, ATPase subunit, putative [Alicycliphilus denitrificans BC] Length = 454 Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 41/292 (14%), Positives = 78/292 (26%), Gaps = 33/292 (11%) Query: 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRP----GMSIICIANSETQLKNTLWAEVSKWL 132 FK A+ A R GKT + + + + ++ E Q + + V L Sbjct: 23 RFKIAMFA-RQCGKTFTSTLELALDCARAEALGQRRRWVILSRGERQAREAMNEGVKLHL 81 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 + L + W + + + P Sbjct: 82 AALSAGF-------KAYDYDWEPGIKALEVELPGGSKITA-------LPANPDTARGFSA 127 Query: 193 MAVFNDEASG--TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250 V DE + I K++ ++ + S FYD+ + W R Sbjct: 128 N-VLLDEFAFHQDSRAIWKALFPVISKPGLKLR--VISTPNGKGNKFYDLMTGADDGWSR 184 Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR-- 308 + D + + + D D+ E ++ + ++P I Sbjct: 185 HTTDIYQAVADGLPRNIEELRKGAGDDDLWAQEFELKWLDEAS-AWLPFELITACEHEAA 243 Query: 309 -EAIDDLYAPLIMGCDIAGEGGDKTVVVFR----RGNIIEHIFDWSAKLIQE 355 + P +G DIA D V+ + I + E Sbjct: 244 GKPEHYQGGPCFVGVDIA-SRNDLFVIWVFELVGDVLWVREIIERRRITFAE 294 >gi|116751218|ref|YP_847905.1| hypothetical protein Sfum_3801 [Syntrophobacter fumaroxidans MPOB] gi|116700282|gb|ABK19470.1| conserved hypothetical protein [Syntrophobacter fumaroxidans MPOB] Length = 507 Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 37/253 (14%), Positives = 66/253 (26%), Gaps = 29/253 (11%) Query: 38 WGIKGKPLEHFSQPHRW--QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95 WG S W Q+E + + GR +GK+ + + Sbjct: 20 WGQAYLYNRDGSGRDYWPHQVEDLRCPAKNIIHLD--------------GRDVGKSIVLS 65 Query: 96 WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 L T G + A + L +T+ E+ L P + P Sbjct: 66 TDALHYAFTTRGGQGLIAAPHQGHL-DTIIEEIEFQLDSNPDLMNSIALTKYGKPKIHRK 124 Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 S Y Y + H V+ DE + + K++ Sbjct: 125 PYFRLEFTNGSVLYFRPAGAY-------GDAFRSLHVGRVWVDEGAWLTERAWKALRQCL 177 Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS-RYG 274 R S L Y + + ++ + ++ G Sbjct: 178 KAGGTLRI---YSTPNGLRDTTYYRLTS-SDQFHVFRWPSWLNPLWTEDREAELLEFYGG 233 Query: 275 LDSDVARIEILGQ 287 DS + E+ G+ Sbjct: 234 RDSSGWQHEVAGE 246 >gi|302343251|ref|YP_003807780.1| hypothetical protein Deba_1821 [Desulfarculus baarsii DSM 2075] gi|301639864|gb|ADK85186.1| conserved hypothetical protein [Desulfarculus baarsii DSM 2075] Length = 507 Score = 77.3 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 37/253 (14%), Positives = 66/253 (26%), Gaps = 29/253 (11%) Query: 38 WGIKGKPLEHFSQPHRW--QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95 WG S W Q+E + + GR +GK+ + + Sbjct: 20 WGQAYLYNRDGSGRDYWPHQVEDLRCPAKNIIHLD--------------GRDVGKSIVLS 65 Query: 96 WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 L T G + A + L +T+ E+ L P + P Sbjct: 66 TDALHYAFTTRGGQGLIAAPHQGHL-DTIIEEIEFQLDTNPDLMNSIALTKYGKPKIHRK 124 Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 S Y Y + H V+ DE + + K++ Sbjct: 125 PYFRLEFTNGSVLYFRPAGAY-------GDAFRSLHVGRVWVDEGAWLTERAWKALRQCL 177 Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS-RYG 274 R S L Y + + ++ + ++ G Sbjct: 178 KAGGTLRI---YSTPNGLRDTTYYRLTS-SDQFHVFRWPSWLNPLWTEDREAELLEFYGG 233 Query: 275 LDSDVARIEILGQ 287 DS + E+ G+ Sbjct: 234 RDSSGWQHEVAGE 246 >gi|225220117|ref|YP_002720084.1| phage terminase large subunit [Enterobacteria phage SSL-2009a] gi|224986058|gb|ACN74622.1| phage terminase large subunit [Enterobacteria phage SSL-2009a] Length = 461 Score = 77.3 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 45/309 (14%), Positives = 85/309 (27%), Gaps = 31/309 (10%) Query: 44 PLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS 103 P +Q + + + +G G GK+ + A ++ L++ Sbjct: 24 PTRVAQAVRLYQPDCLPHQVELLRDTKTKILG------LCSGFGGGKSWVAARKVIQLLT 77 Query: 104 TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163 PG I + L ++ E+ K R F Q + Sbjct: 78 LNPGYDGIVTEPTIPLLVKIMYPELEKAFDEAGFRWKFNKQ-------------DKIYNV 124 Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223 + +T E + + + + DE T + + F Sbjct: 125 LVKGKWTRVI----CESMENYTRLIGVNAAWIVADEFDTTKQDVAMAAYHKLLGRLRAGF 180 Query: 224 --WIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280 + +T Y IF + + T + + F + + S+Y +++ Sbjct: 181 VRQFVIVSTPEGYRAMYQIFEVEKGSQKRLIRAKTTDNHHLPADFIDTLRSQY--PANLI 238 Query: 281 RIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGN 340 + G F E S E LI+G D VV RR Sbjct: 239 DAYLNGLFVNLTSGAVYKMFNREGNASTE-EVHPDDTLIIGMDFNVT-KMAAVVYVRR-Q 295 Query: 341 IIEHIFDWS 349 I ++ Sbjct: 296 RITENKEFR 304 >gi|163842863|ref|YP_001627267.1| hypothetical protein BSUIS_A0614 [Brucella suis ATCC 23445] gi|163673586|gb|ABY37697.1| protein of unknown function DUF264 [Brucella suis ATCC 23445] Length = 411 Score = 77.3 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 34/266 (12%), Positives = 66/266 (24%), Gaps = 36/266 (13%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSML 135 I GRG GKT A + + P I + + + + S LS+ Sbjct: 27 IMGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVS 86 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 ++ + + A Sbjct: 87 RL-VRPRYEASRRRL------------------IWDNGAVATLFSSEDPDSLRGPQFDAA 127 Query: 196 FNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253 + DE + P + + R + T + Sbjct: 128 WCDELAKWKNPQETWDMLQFGLRLGDNPRQVV---TTTPRAVPLLKALLTDRTVSMTHMR 184 Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 + GF + I RY + R E+ G+ ++ + IE+ Sbjct: 185 TAENAGNLAEGFMQTIARRYAGT-RLGRQELDGELVEERPGALWSRDRIEQCFEEN--PP 241 Query: 314 LYAPLIMGCDI---AGEGGDKTVVVF 336 A +++ D +G+ D +V Sbjct: 242 PLARIVVAVDPPASSGKASDACSIVV 267 >gi|260168345|ref|ZP_05755156.1| Phage DNA packaging protein [Brucella sp. F5/99] Length = 411 Score = 77.3 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 34/266 (12%), Positives = 70/266 (26%), Gaps = 36/266 (13%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSML 135 I GRG GKT A + + P I + + + + S LS+ Sbjct: 27 IMGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVS 86 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 ++ + + A Sbjct: 87 RL-VRPRYEASRRRL------------------IWDNGAVATLFSSEDPDSLRGPQFDAA 127 Query: 196 FNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253 + DE + P + + R ++T+ R + + Sbjct: 128 WCDELAKWKNPQETWDMLQFGLRLGDNPR-QVVTTTPRAV--PLLKALLTDRTVSMTHMR 184 Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 + GF + I RY + R ++ G+ ++ + IE+ Sbjct: 185 TAENAGNLAEGFMQTIARRYAGT-RLGRQKLDGELVEERPGALWSRDRIEQCFEEN--PP 241 Query: 314 LYAPLIMGCDI---AGEGGDKTVVVF 336 A +++ D +G+ D +V Sbjct: 242 PLARIVVAVDPPASSGKASDACGIVV 267 >gi|62289552|ref|YP_221345.1| terminase large subunit [Brucella abortus bv. 1 str. 9-941] gi|62195684|gb|AAX73984.1| hypothetical terminase large subunit [Brucella abortus bv. 1 str. 9-941] Length = 380 Score = 76.9 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 34/265 (12%), Positives = 69/265 (26%), Gaps = 36/265 (13%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSMLP 136 GRG GKT A + + P I + + + + S LS+ Sbjct: 1 MGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVSR 60 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 ++ + + A + Sbjct: 61 L-VRPRYEASRRRL------------------IWDNGAVATLFSSEDPDSLRGPQFDAAW 101 Query: 197 NDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254 DE + P + + R ++T+ R + + Sbjct: 102 CDELAKWKNPQETWDMLQFGLRLGDNPR-QVVTTTPRAV--PLLKALLTDRTVSMTHMRT 158 Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314 + GF + I RY + R E+ G+ ++ + IE+ Sbjct: 159 AENAGNLAEGFMQTIARRYAGT-RLGRQELNGELVEERPGALWSRDRIEQCFEEN--PPP 215 Query: 315 YAPLIMGCDI---AGEGGDKTVVVF 336 A +++ D +G+ D +V Sbjct: 216 LARIVVAVDPPASSGKASDACGIVV 240 >gi|126735952|ref|ZP_01751696.1| Putative large terminase [Roseobacter sp. CCS2] gi|126714509|gb|EBA11376.1| Putative large terminase [Roseobacter sp. CCS2] Length = 408 Score = 76.9 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 38/267 (14%), Positives = 66/267 (24%), Gaps = 35/267 (13%) Query: 81 AISAGRGIGKTTLNAWM---MLWLISTRPG---MSIICIANSETQLKNTLWAEVSKWLSM 134 I GRG GKT A M+ + + + Q + + S LS+ Sbjct: 15 VILGGRGAGKTRAGAEWVRRMVEGALPHAPGAARRVALVGETMDQAREVMVFGDSGILSV 74 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 P E + A Sbjct: 75 CPPDRRPEWIAGRRLL------------------VWPNGAEAQVFSAHDPDSLRGPQFDA 116 Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252 V+ DE + D + + R + T R + D+ + Sbjct: 117 VWADELAKWRRGDEAWDMLQFALRLGDSPRACVT--TTPRKSQMLSDLLERDTT-VVTHA 173 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + F + I RYG S + R E+ G + + E Sbjct: 174 ATQANRANLADSFLKEIEGRYGGTS-LGRQEMEGVMLTEVEGALWSSADLAGCQVGEV-- 230 Query: 313 DLYAPLIMGCDI---AGEGGDKTVVVF 336 +++ D + G D+ +V Sbjct: 231 SALDRIVVAIDPPGTSHAGSDQCGIVV 257 >gi|224582844|ref|YP_002636642.1| hypothetical protein SPC_1035 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224467371|gb|ACN45201.1| hypothetical protein SPC_1035 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 540 Score = 76.9 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 42/356 (11%), Positives = 88/356 (24%), Gaps = 24/356 (6%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIKGKPLEHFSQPHRWQL 56 P + + L + H E + + K F WG+ P Sbjct: 12 PDYQMVFEWRMERLQRIRQHPEMLPALKQFYRTNPAQFIIDWGMTTDPRNIDYGLPVTIP 71 Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 + + R +G + M L M I + Sbjct: 72 FLLFPKQEEWIHWIMERWGKRENGITEKSREMGLSWTAIGMACSLCLFNKEMVIGFGSRK 131 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 E + ++ + + ++ +A + Sbjct: 132 EEYV-DSTGDPKALFWKARKFVETLPVEFRGSWNEKKHAPYMRVEFP---------ETGA 181 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236 + DEA+ + T I S+ + Sbjct: 182 VIKGEAGDNIGRGDRTTLYLVDEAAFLQRPLLIDAALSQTTRCR----IDLSSVNGMANP 237 Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 F + + R+ D ++ + + V E+ + Sbjct: 238 FAQKRHGGK--IPVFTFHWRSDPRKDDEWYRRECEKI-DNPVVVAQELDLNYSASAEGIL 294 Query: 297 IPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350 IP ++++ A+ + D+A EG DK R G ++E++ +WS Sbjct: 295 IPSDWVQAAVDAHIRLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSG 350 >gi|159184549|ref|NP_353972.2| large terminase phage packaging protein [Agrobacterium tumefaciens str. C58] gi|159139855|gb|AAK86757.2| large terminase phage packaging protein [Agrobacterium tumefaciens str. C58] Length = 402 Score = 76.9 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 37/264 (14%), Positives = 70/264 (26%), Gaps = 30/264 (11%) Query: 84 AGRGIGKTTLNAWMMLWLISTRP--GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 GRG GKT A + + S + I +A + + + +S + RH Sbjct: 26 GGRGSGKTRAGAEWVHAVASAGKQSDLRIALVAETLGDAREVMIDGISGICRIAR-RHRP 84 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + + ++DE Sbjct: 85 AFEVSRRRL------------------LWPNGAMAQVFSSEDPESLRGPQFHLAWSDELG 126 Query: 202 GT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 P + R + T R + + P + Sbjct: 127 KWKYPQETWDMLQFGLRLGEMPRQLVT--TTPRPIPLLKALLSDPTSR-VARMPTAMNAQ 183 Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319 + GF + + RYG + R EI G+ + +E EA + + ++ Sbjct: 184 NLSPGFLKAMQERYGGT-RLGRQEIGGELIDEREGALWKRADLEA--IIEAAHEPLSRIV 240 Query: 320 MGCD-IAGEGGDKTVVVFRRGNII 342 + D AG G + + G + Sbjct: 241 VAVDPPAGVGENSCCGIVVAGLGM 264 >gi|322513476|ref|ZP_08066587.1| phage terminase [Actinobacillus ureae ATCC 25976] gi|322120735|gb|EFX92618.1| phage terminase [Actinobacillus ureae ATCC 25976] Length = 406 Score = 76.9 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 38/266 (14%), Positives = 70/266 (26%), Gaps = 31/266 (11%) Query: 84 AGRGIGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 GRG KT A M + R I+ L+++ EV + + Sbjct: 26 GGRGSAKTRTFAKMTAVIAYKRAMAGDSGVILRGREFMNSLEDSSLEEVKQAIRA----- 80 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + E +S R + + + DE Sbjct: 81 -----------ESFLNDFFEICEKYIRTKCGRVSYIFSGLRHNLDSIKSKARILFAWVDE 129 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-PLEDWKRYQIDTRTV 258 A ++ ++ E N W+ N + + F P ++ +++ Sbjct: 130 AESVSEMAWSKLIPTVREHNSE-IWLTW-NPEKRDSATDKRFRQFPPDNSVIVEMNYTYN 187 Query: 259 EGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317 + ++ D R G + +Q Y E + E D Sbjct: 188 PWFPDVLEQERLNDKKRLDDATYRWIWEGAYLEQSEAQIFRDKYQE--LEFEPNPDFDGS 245 Query: 318 LIMGCDIAGEGGDKTVV---VFRRGN 340 G D G D T G+ Sbjct: 246 YH-GLDF-GFANDPTAAIKCWVFDGD 269 >gi|148560043|ref|YP_001258583.1| putative terminase large subunit [Brucella ovis ATCC 25840] gi|148371300|gb|ABQ61279.1| putative terminase large subunit [Brucella ovis ATCC 25840] Length = 380 Score = 76.9 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 34/265 (12%), Positives = 69/265 (26%), Gaps = 36/265 (13%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSMLP 136 GRG GKT A + + P I + + + + S LS+ Sbjct: 1 MGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVSR 60 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 ++ + + A + Sbjct: 61 L-VRPRYEASRRRL------------------IWDNGAVATLFSSEDADSLRGPQFDAAW 101 Query: 197 NDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254 DE + P + + R ++T+ R + + Sbjct: 102 CDELAKWKNPQETWDMLQFGLRLGDNPR-QVVTTTPRAV--PLLKALLTDRTVSMTHMRT 158 Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314 + GF + I RY + R E+ G+ ++ + IE+ Sbjct: 159 AENAGNLAEGFMQTIARRYAGT-RLGRQELDGELVEERPGALWSRDRIEQCFEEN--PPP 215 Query: 315 YAPLIMGCDI---AGEGGDKTVVVF 336 A +++ D +G+ D +V Sbjct: 216 LARIVVAVDPPASSGKASDACGIVV 240 >gi|322420465|ref|YP_004199688.1| hypothetical protein GM18_2968 [Geobacter sp. M18] gi|320126852|gb|ADW14412.1| hypothetical protein GM18_2968 [Geobacter sp. M18] Length = 507 Score = 76.9 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 37/253 (14%), Positives = 67/253 (26%), Gaps = 29/253 (11%) Query: 38 WGIKGKPLEHFSQPHRW--QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95 WG S W Q+E + + GR +GK+ + + Sbjct: 20 WGQAYLYNRDGSGRDYWPHQVEDLRCPAKNIIHLD--------------GRDVGKSIVLS 65 Query: 96 WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 L T G + A + L +T+ E+ L P + P+ Sbjct: 66 TDALHYAFTTRGGQGLIAAPHQGHL-DTIIEEIEFQLDTNPDLMNSIALTKYGKPNIHRK 124 Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 S Y Y + H V+ DE + + K++ Sbjct: 125 PYFRLEFTNGSVLYFRPAGAY-------GDAFRSLHVGRVWVDEGAWLTERAWKALRQCL 177 Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS-RYG 274 R S L Y + + ++ + ++ G Sbjct: 178 KAGGTLRI---YSTPNGLRDTTYYRLTS-SDQFHVFRWPSWLNPLWTEDREAELLEFYGG 233 Query: 275 LDSDVARIEILGQ 287 DS + E+ G+ Sbjct: 234 RDSSGWQHEVAGE 246 >gi|23501474|ref|NP_697601.1| terminase large subunit [Brucella suis 1330] gi|23347378|gb|AAN29516.1| terminase large subunit, putative [Brucella suis 1330] Length = 384 Score = 76.9 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 34/265 (12%), Positives = 70/265 (26%), Gaps = 36/265 (13%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSMLP 136 GRG GKT A + + P I + + + + S LS+ Sbjct: 1 MGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVSR 60 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 ++ + + A + Sbjct: 61 L-VRPRYEASRRRL------------------IWDNGAVATLFSSEDPDSLRGPQFDAAW 101 Query: 197 NDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254 DE + P + + R ++T+ R + + Sbjct: 102 CDELAKWKNPQETWDMLQFGLRLGDNPR-QVVTTTPRAV--PLLKALLTDRTVSMTHMRT 158 Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314 + GF + I RY + R E+ G+ ++ + + IE+ Sbjct: 159 AENAGNLAEGFMQTIARRYAGT-RLGRQELDGELVEERLGALWSRDRIEQCFEEN--PPP 215 Query: 315 YAPLIMGCDI---AGEGGDKTVVVF 336 A +++ D +G+ D +V Sbjct: 216 LARIVVAVDPPASSGKASDACGIVV 240 >gi|225873954|ref|YP_002755413.1| hypothetical protein ACP_2370 [Acidobacterium capsulatum ATCC 51196] gi|225791299|gb|ACO31389.1| conserved hypothetical protein [Acidobacterium capsulatum ATCC 51196] Length = 492 Score = 76.5 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 35/315 (11%), Positives = 72/315 (22%), Gaps = 61/315 (19%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 + R +G +T A + PG + +A++ + +L+ V ++ LP Sbjct: 69 IVLKARQLGISTWIAARFFLKTALIPGTLTVQVAHT-QEAAESLFQMVHRFYRQLPEDTL 127 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 +++ + ++ Y E + E Sbjct: 128 VPLRTARANARQLVFPAIDSE--------------YRVETAGDRNAGRGLTITNLHCTEV 173 Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI-DTR--- 256 + P + + G L+P ++ S G F++ + E Sbjct: 174 ARWPGDAEEVLQGMRAALSPKGELVLESTPMGAAGCFWNTWQSAAETGMVQHFFPWWMEA 233 Query: 257 --------------------TVEGIDSGFHEGIISRYGLDSDVARIEI-----LGQFPQQ 291 + ++AR E F Sbjct: 234 AYAAEPVDETSLTTEERALMEAHSLSPEQIGYRRQIRANYRELARQEYAETAHDC-FLAS 292 Query: 292 EVNNFIPHNYIEE--------------AMSREAIDDLYAPLIMGCDIAGEG--GDKTVVV 335 F + + I+ D AG G GD +V Sbjct: 293 GECYFDAAAIDRRLSAVEAPLRMRLGGRLQIWYPPEGQRRYIVAVDPAGGGSEGDYSVAQ 352 Query: 336 FRRGNIIEHIFDWSA 350 + Sbjct: 353 VIDEKTGLQCAELQM 367 >gi|86750600|ref|YP_487096.1| hypothetical protein RPB_3490 [Rhodopseudomonas palustris HaA2] gi|86573628|gb|ABD08185.1| Protein of unknown function DUF264 [Rhodopseudomonas palustris HaA2] Length = 423 Score = 76.5 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 38/262 (14%), Positives = 73/262 (27%), Gaps = 35/262 (13%) Query: 84 AGRGIGKTTLNAWMM------LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 GRG GKT A + L ++ P I + +E ++ + VS L++ P Sbjct: 40 GGRGAGKTRAGAEWIRCQALGLAPFASEPVARIALVGETEHDVREVMIEGVSGLLAVHPP 99 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + Q D ++ Sbjct: 100 DQRPQWQPSRKRLE------------------WSNGAVAQAFSADDPQSLRGPQFSCAWS 141 Query: 198 DEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255 DE + + + R + + T R + P + Sbjct: 142 DEMAKWRYAQDAFDMLQFGLRLGSQPRQ--VITTTPRPTALLKRLLADPS-AVTTHAPTR 198 Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY 315 + F EG+++RY + R E+ G+ + + IE +A Sbjct: 199 ANALNLAPTFLEGVMARYAGT-RLGRQELDGELIEDRPDALWSRALIESCRVVDAPPLQ- 256 Query: 316 APLIMGCDI---AGEGGDKTVV 334 L++ D +G+ D + Sbjct: 257 -RLVVAVDPPASSGKRADSCGI 277 >gi|300088757|ref|YP_003759279.1| hypothetical protein Dehly_1680 [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528490|gb|ADJ26958.1| conserved hypothetical protein [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 507 Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 38/253 (15%), Positives = 66/253 (26%), Gaps = 29/253 (11%) Query: 38 WGIKGKPLEHFSQPHRW--QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95 WG S W Q+E + + GR +GK+ + + Sbjct: 20 WGQAYLYNRDGSGRDYWPHQVEDLRCPAKNIIHLD--------------GRDVGKSIVLS 65 Query: 96 WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 L T G + A + L +T+ E+ L P + P Sbjct: 66 TDALHYAFTTRGGQGLIAAPHQGHL-DTIIEEIEFQLDSNPDLMNSIALTKYGKPKIHRK 124 Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 S Y Y + H V+ DE + + K++ Sbjct: 125 PYFRLEFTNGSVLYFRPAGAY-------GDAFRSLHVGRVWVDEGAWLTERAWKALRQCL 177 Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS-RYG 274 R S L Y E + ++ + ++ G Sbjct: 178 KAGGTLRI---YSTPNGLRDTTYYRLTS-SEQFHVFRWPSWLNPLWTEDREAELLEFYGG 233 Query: 275 LDSDVARIEILGQ 287 DS + E+ G+ Sbjct: 234 RDSSGWQHEVAGE 246 >gi|170751343|ref|YP_001757603.1| hypothetical protein Mrad2831_4961 [Methylobacterium radiotolerans JCM 2831] gi|170657865|gb|ACB26920.1| protein of unknown function DUF264 [Methylobacterium radiotolerans JCM 2831] Length = 432 Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 71/280 (25%), Gaps = 36/280 (12%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134 A+ GRG GKT A + L P I + + +++ + S L Sbjct: 47 AVIGGRGSGKTRTGAEWVDALARGDPAFAAAPVGRIALVGETHLDVRDVMVEGPSGLLG- 105 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 LP R + A Sbjct: 106 LPARGRARPTWSPSRRR----------------VDWSNGAVALAFSAEEPDALRGPQFGA 149 Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252 + DEA+ P+ + R + T R + P Sbjct: 150 AWCDEAAKWRRPEAAFDMLQFGLRLGARPRNLVT--TTPRPVPLIRRLLADPRT-VVSRA 206 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + F + ++ RY + R E+ G+ + +E R A Sbjct: 207 RTHDNAAHLAPDFLQQVVGRYAGT-RLGRQELDGELIADRDDALWTRAALEA--DRIAAA 263 Query: 313 DLYAPLIMGCDI---AGEGGDKTVVVF--RRGNIIEHIFD 347 +++ D +G D +V R G + D Sbjct: 264 PDLGRIVVAVDPPAASGARSDACGIVAAGRAGGHAYVLAD 303 >gi|158422729|ref|YP_001524021.1| hypothetical protein AZC_1105 [Azorhizobium caulinodans ORS 571] gi|158329618|dbj|BAF87103.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571] Length = 436 Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 35/264 (13%), Positives = 69/264 (26%), Gaps = 35/264 (13%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSML 135 + GRG GKT A + L RP I +A + L+ + VS L++ Sbjct: 51 VLGGRGAGKTRAGAEWVRGLALGRPPFAPAPVGRIALVAETMGDLREVMVEGVSGLLAVH 110 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 P + + A Sbjct: 111 PAAERPRWEPTRRRL------------------VWPNGAVAQGFSAEDPESLRGPQFEAA 152 Query: 196 FNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253 + DE + + + + R + T R + + P + Sbjct: 153 WLDELAKWRRAEAVFDMLQFGLRLGAQPRQMVT--TTPRPSALLRRLMADPS--TVLSRA 208 Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 T + + + + R E+ G+ + + + +REA Sbjct: 209 TTAQNAFHLAPAFLDTVLARYGGTRLGRQELEGEIIEDRPDALWTRSA--LEAAREAAAP 266 Query: 314 LYAPLIMGCDI---AGEGGDKTVV 334 A +++ D + G D + Sbjct: 267 PLARVVVALDPPASSRAGADACGI 290 >gi|330996205|ref|ZP_08320095.1| phage terminase, large subunit, PBSX family [Paraprevotella xylaniphila YIT 11841] gi|329573709|gb|EGG55300.1| phage terminase, large subunit, PBSX family [Paraprevotella xylaniphila YIT 11841] Length = 430 Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 34/284 (11%), Positives = 77/284 (27%), Gaps = 42/284 (14%) Query: 76 TIFKCAISAGRGIGKTTLNAWMM--LWLISTRPGM---SIICIANSETQLKNTLWAEVSK 130 F I+ GRG GK+ A + L +R SI+ + ++ E+ + Sbjct: 22 EHFIILITGGRGSGKSFNAATFIERLTFEQSRDRTFAHSILYCRYTMVSANLSIIPEIQE 81 Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190 + + +F+ +M + +T S + H Sbjct: 82 KIDIDGGSKYFKTT-----------RSDIVNMFSGGRIMFRGIKTSSGNQTAKLKSIHG- 129 Query: 191 HGMAVFNDEASGTPDII-NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249 DEA + I+ + I+ N N + Y + Sbjct: 130 -ITTFVCDEAEEWTNEQDFDKIMLSIRQKGIQNRIIIIMNPTDSNHFIYKKYIENTHKLV 188 Query: 250 ----------------RYQIDTRTV-EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292 + + F + + + + ++G++ Sbjct: 189 EIDGVPVQISTHPNVLHIHTTYFDNIDNLSPQFIKEVEQMKAENPEKYAHTVIGRWADVA 248 Query: 293 VNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 + +++ + + +G D G D+T +V Sbjct: 249 EGAIYKKWGVVKSIPQWCK-----KIALGLDF-GFTHDETAIVM 286 >gi|225621691|ref|YP_002724049.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1] gi|225547649|gb|ACN93626.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1] Length = 450 Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 44/288 (15%), Positives = 85/288 (29%), Gaps = 43/288 (14%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMS 109 Q E + ++ H K S G GKT L +++++ + + Sbjct: 49 QKEVLFDIESH----------DYSKVIFSGGIASGKTFLASYLLVKKLIENKSFYEQDTN 98 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I NS L ++ K S+L + + +S +L Sbjct: 99 NFIIGNSIGLLMTNTVKQIEKICSLLGI-DYEKKKSGQSFCKIAGLKLN----------- 146 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 Y + D F + ++ +EA+ ++ + I +N Sbjct: 147 -----IYGGKNRDAFSKIRGGNSAIIYVNEATVIHKETLLEVIKRLRKG--KEIIIFDTN 199 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 +F + + +K Y T + F + Y + G++ Sbjct: 200 PESPAHYFKTDYIENTDVFKTYTFTTYDNPLNSADFIQTQEKLYRRFPAYRARVLYGEWI 259 Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336 E F E +++ + IM D A GGD T + Sbjct: 260 LNESTLFN-----EMIFNQDYE---FKSPIMYIDPAFSVGGDNTAICV 299 >gi|306845199|ref|ZP_07477775.1| Phage DNA packaging protein [Brucella sp. BO1] gi|306274358|gb|EFM56165.1| Phage DNA packaging protein [Brucella sp. BO1] Length = 430 Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 37/295 (12%), Positives = 74/295 (25%), Gaps = 39/295 (13%) Query: 56 LEFMEAVDVHCHSNVNNSNPTI--FKCA-ISAGRGIGKTTLNAWMMLWLISTRPG----- 107 + + A D + P ++ I GRG GKT A + + P Sbjct: 17 RQILAAQDEWLIRARDAQLPPDGDWRVWLIMGGRGSGKTRAGAEWVSGMALGLPPFAGKP 76 Query: 108 -MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 I + + + + S LS+ ++ Sbjct: 77 SGHIALVGETFNDAREVMVDGPSGILSVSRL-VRPRYEASRRRL---------------- 119 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFW 224 + + A + DE + P + + R Sbjct: 120 --IWDNGAVATLFSSEDPDSLRGPQFDAAWYDELAKWKNPQETWDMLQFGLRLGDNPRQV 177 Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 + T + + GF + I RY + R E+ Sbjct: 178 V---TTTPRAVPLLKALLTDRTVSMTHMRTAENAGNLAEGFMQTIARRYAGT-RLGRQEL 233 Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVVVF 336 G+ ++ + IE+ A +++ D +G+ D +V Sbjct: 234 DGELVEERPGALWSRDRIEQCFEEN--PPPLARIVVAVDPPASSGKASDACGIVV 286 >gi|78356952|ref|YP_388401.1| hypothetical protein Dde_1909 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219357|gb|ABB38706.1| hypothetical protein Dde_1909 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 507 Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 38/253 (15%), Positives = 66/253 (26%), Gaps = 29/253 (11%) Query: 38 WGIKGKPLEHFSQPHRW--QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95 WG S W Q+E + + GR +GK+ + + Sbjct: 20 WGQAYLYNRDGSGRDYWPHQVEDLRCPAKNIIHLD--------------GRDVGKSIVLS 65 Query: 96 WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 L T G + A + L +T+ E+ L P + P Sbjct: 66 TDALHYAFTTRGGQGLIAAPHQGHL-DTIIEEIEFQLDTNPDLMNSIALTKYGKPKIHRK 124 Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 S Y Y + H V+ DE + + K++ Sbjct: 125 PYFRLEFTNGSVLYFRPAGAY-------GDAFRSLHVGRVWVDEGAWLTERAWKALRQCL 177 Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS-RYG 274 R S L Y E + ++ + ++ G Sbjct: 178 KAGGTLRI---YSTPNGLRDTTYYRLTS-SEQFHVFRWPSWLNPLWTEDREAELLEFYGG 233 Query: 275 LDSDVARIEILGQ 287 DS + E+ G+ Sbjct: 234 RDSSGWQHEVAGE 246 >gi|94990333|ref|YP_598433.1| terminase large subunit [Streptococcus phage 10270.2] gi|94994256|ref|YP_602354.1| Terminase large subunit [Streptococcus phage 10750.2] gi|94543841|gb|ABF33889.1| Terminase large subunit [Streptococcus phage 10270.2] gi|94547764|gb|ABF37810.1| Terminase large subunit [Streptococcus phage 10750.2] Length = 432 Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 41/290 (14%), Positives = 84/290 (28%), Gaps = 29/290 (10%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 NP I A GRG GK++ A ++ + + ++ +CI ++ L+ +++ ++ +S Sbjct: 30 NPQILNIACKGGRGSGKSSNIA-FIISRLIIQYPVNAVCIRKTDNTLEQSVYEQIKWAIS 88 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 +F+ L + + I R + Sbjct: 89 EQGLERYFKFNKSPLR------------ITYIPRGNYIVFRGAQNPERIKSLKDSRFPFA 136 Query: 194 AVFNDE-ASGTPDIINKSILGFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFNIPLED 247 + +E A + K+I + T N R W + + Sbjct: 137 IGWIEELAEFKTEDEVKTITNSLLRGELGDGLFYKFFYTYNPPKRKQSWVNKKYESQFQP 196 Query: 248 WKRY--QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA 305 + + I F + R E LG+ +P + + Sbjct: 197 SNTFVHASTYKDNPFIAKEFIAEAEATRERSERRYRWEYLGEAIGSG---VVPFDNLRFE 253 Query: 306 MSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR----GNIIEHIFDWSAK 351 + + + G D G D V N I I ++ + Sbjct: 254 RITDEQVADFDNIRNGID-YGYATDPLAFVRWHYDKKKNGIYAIDEYYGQ 302 >gi|323139470|ref|ZP_08074518.1| hypothetical protein Met49242DRAFT_3906 [Methylocystis sp. ATCC 49242] gi|322395272|gb|EFX97825.1| hypothetical protein Met49242DRAFT_3906 [Methylocystis sp. ATCC 49242] Length = 439 Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 39/256 (15%), Positives = 73/256 (28%), Gaps = 33/256 (12%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSML 135 I GRG GKT A + L RP I I + ++ + VS L++ Sbjct: 54 ILGGRGAGKTRAGAEWVKGLALGRPHFCTRPVSRIALIGETAADVREVMIEGVSGLLAIH 113 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 R +S + + A Sbjct: 114 GKRDRPRWESSRRRL------------------VWDSGVVAQAFSAEDPESLRGPQFHAA 155 Query: 196 FNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253 + DE + + + R + T R D+ P + Sbjct: 156 WCDELAKWRYARETWDMLQFGLRLGDWPRQLVT--TTPRPTPLLKDLIAHPAT-VLTRAL 212 Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 + F E ++++Y + R E+ G+ ++ + + IE + +A Sbjct: 213 TRENAANLAPSFLESVVAQYAGT-RLGRQELDGEIVEERKDALWTRDLIEASRVADAP-- 269 Query: 314 LYAPLIMGCD-IAGEG 328 A +++ D A G Sbjct: 270 RLARIVVAVDPPASFG 285 >gi|156564098|ref|YP_001429607.1| terminase large subunit [Bacillus phage 0305phi8-36] gi|154622795|gb|ABS83675.1| terminase large subunit [Bacillus phage 0305phi8-36] Length = 635 Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 32/223 (14%), Positives = 67/223 (30%), Gaps = 22/223 (9%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L +P W E ++ + + + GR +GKT M+LW T Sbjct: 50 LAILDKPKFWAAETLKWFCRDYQEPMLQEMADSKRTVLRLGRRLGKTETMCIMILWHAFT 109 Query: 105 RPGM------SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 +P I+ IA E Q+ + ++ +S+ + M + + + Sbjct: 110 QPNKGPNNQYDILIIAPYEEQV-DLIFKRLSQLIDMSGDVN--------------PSRDI 154 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218 ++ + + + T + + DE + +I+ E Sbjct: 155 DKHIELPNGTVIH-GITAGSKSGSGAANTRGQRADLIVLDEMDYMGESEITNIMNIRNEA 213 Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI 261 I+ S +Y + + + TR G Sbjct: 214 PERIKMIVASTPSGRRDSYYKWCVGATKTYAQDDELTRQNGGR 256 >gi|67920466|ref|ZP_00513986.1| conserved hypothetical protein [Crocosphaera watsonii WH 8501] gi|67857950|gb|EAM53189.1| conserved hypothetical protein [Crocosphaera watsonii WH 8501] Length = 244 Score = 76.5 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 38/243 (15%), Positives = 72/243 (29%), Gaps = 37/243 (15%) Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-------------GMSII 111 H ++P F+ + GR GK+ L + P +++ Sbjct: 9 HKSQLEVFNDPQKFQVLVC-GRRFGKSHLQVTKHVIDCLMFPKLMPGYNVKQQTMETAVL 67 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + Q + LW + K L P+ ++ G +++ Sbjct: 68 VGMPTLKQARKILWKPLVKTLENCPYVDKISRSDYTIRFKGNRPDII------------- 114 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNT 230 + + V DE P +I+ I+ + P+ + T Sbjct: 115 ----LAGLNDNAGDRARGLKLWRVCIDEVQDVRPSVIDAVIIPAMAD-TPHSRALFTGTP 169 Query: 231 RRLNGWFYDIFNIPL--EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 + N Y++F + +DWK Y T T I E R + E Q+ Sbjct: 170 KGKNNHLYNLFTMERDNDDWKSYNFPTWTNPLISKDEVERARKRLS--PRLFSQEFEAQW 227 Query: 289 PQQ 291 + Sbjct: 228 KES 230 >gi|332557899|ref|ZP_08412221.1| hypothetical protein RSWS8N_02570 [Rhodobacter sphaeroides WS8N] gi|332275611|gb|EGJ20926.1| hypothetical protein RSWS8N_02570 [Rhodobacter sphaeroides WS8N] Length = 432 Score = 76.5 bits (186), Expect = 7e-12, Method: Composition-based stats. Identities = 38/288 (13%), Positives = 76/288 (26%), Gaps = 35/288 (12%) Query: 81 AISAGRGIGKTTLNAWMMLWLIS-TRPG-----MSIICIANSETQLKNTLWAEVSKWLSM 134 + GRG GKT A + + RPG + +A + Q + + S L+ Sbjct: 39 VVMGGRGAGKTRAGAEWVRAEVEGARPGDPGRSRHVALVAETIDQAREVMVFGESGILAC 98 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 P E ++ A Sbjct: 99 SPPDRRPEWEAGRKRL------------------VWPNGAVAQIFSAHDPESLRGPQFDA 140 Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252 + DE + + + + R ++T+ R + + Sbjct: 141 AWADELAKWGRAEEAWDMLQFSLRLGDQPR-QVVTTTPRNV--PVLRHILDNPSTVVTHA 197 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + F + +RY + R E+ G + IE SR Sbjct: 198 PTEANRAYLARSFLAEVHARYDGT-RLGRQELEGLLLEDVEGALWTTARIEA--SRLEEP 254 Query: 313 DLYAPLIMGCDIAGEG---GDKTVVVFRRGNIIEHIFDWSAKLIQETN 357 +++ D G D+ ++ DW A ++++ + Sbjct: 255 GPLDRIVVAVDPPVTGTEASDECGILVVGARTAGPPQDWRAVVLEDAS 302 >gi|78355964|ref|YP_387413.1| hypothetical protein Dde_0917 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218369|gb|ABB37718.1| hypothetical protein Dde_0917 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 507 Score = 76.5 bits (186), Expect = 7e-12, Method: Composition-based stats. Identities = 38/253 (15%), Positives = 66/253 (26%), Gaps = 29/253 (11%) Query: 38 WGIKGKPLEHFSQPHRW--QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95 WG S W Q+E + + GR +GK+ + + Sbjct: 20 WGQAYLYNRDGSGRDYWPHQVEDLRCPAKNIIHLD--------------GRDVGKSIVLS 65 Query: 96 WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 L T G + A + L +T+ E+ L P + P Sbjct: 66 TDALHYAFTTRGGQGLVAAPHQGHL-DTIIEEIEFQLDTNPDLMNSIALTKYGKPKIHRK 124 Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 S Y Y + H V+ DE + + K++ Sbjct: 125 PYFRLEFTNGSVLYFRPAGAY-------GDAFRSLHVGRVWVDEGAWLTERAWKALRQCL 177 Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS-RYG 274 R S L Y E + ++ + ++ G Sbjct: 178 KAGGTLRI---YSTPNGLRDTTYYRLTS-SEQFHVFRWPSWLNPLWTEDREAELLEFYGG 233 Query: 275 LDSDVARIEILGQ 287 DS + E+ G+ Sbjct: 234 RDSSGWQHEVAGE 246 >gi|307591253|ref|YP_003900462.1| hypothetical protein Cyan7822_6211 [Cyanothece sp. PCC 7822] gi|306986818|gb|ADN18693.1| conserved hypothetical protein [Cyanothece sp. PCC 7822] Length = 474 Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 47/343 (13%), Positives = 94/343 (27%), Gaps = 69/343 (20%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P+ +Q + + H I+ R +G T L A L+ G Sbjct: 50 PYDYQKTLIALIKTHHT------------IVIAKTRQLGITELIANYFLFKACHNEGYLG 97 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + + +++ N + + + L + + D + Sbjct: 98 VIFSKTQSDTSNIA-KRIRRQIDSL-----------------YEYIETKTDSLTDIELVN 139 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTS 228 + P+ G + DE++ + I KS + T + I+ S Sbjct: 140 GGRLLFRNSTPNGARGL--ESVSDILYDESAFVDEIEEIYKSSIPCTTVVGSEARIIILS 197 Query: 229 NTRRLNGWFYD--------------------------IFNIPLEDWKRYQIDTRTVEGID 262 +GW++D + I W ++ + Sbjct: 198 TPNGQSGWYWDKLSSNNGDRDILEICEQIRTEKIEPIQYWIDNNQWCKFIVHWLGHPKFS 257 Query: 263 SG---FHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319 + I +++ L D+ E F + + + +D + I Sbjct: 258 QQKETYLRDIKAQFDLPEDIIEQEYNLSF-THSEVIVFSSEIVRKNAIGQWENDPKSNCI 316 Query: 320 M--GCDIAGEGGDKTVVVFRR--GNIIEHIFDW-SAKLIQETN 357 G D + G D TV R N + + K E N Sbjct: 317 YYFGIDTSLLGNDYTVCTILREIDNRYHLVKMYRQRKKTHEYN 359 >gi|125974959|ref|YP_001038869.1| PBSX family phage terminase large subunit [Clostridium thermocellum ATCC 27405] gi|125715184|gb|ABN53676.1| phage terminase, large subunit, PBSX family [Clostridium thermocellum ATCC 27405] Length = 418 Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 31/260 (11%), Positives = 72/260 (27%), Gaps = 20/260 (7%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 + GRG K++ + ++ + P + + + + +K++++ ++ + L + Sbjct: 33 WLKGGRGSTKSSFVSIEIILGVMKDPNANAVALRKVKETIKDSVFEQLVWAIEKLKVTEY 92 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 W + + I R + R + + ++ +E Sbjct: 93 ------------WEIKHNPMELTYLPTGQKILFRGADKPRKIKSIKVSRGYVKFIWYEEV 140 Query: 201 -SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG-WFYDIFNIPLEDWKRYQIDTRTV 258 + I T N W + I D K + TV Sbjct: 141 DEFLGMEEIRIINQSLMRGGEQFVVFYTYNPPNRVNAWVNEEILIDRPDRKVHHSTYLTV 200 Query: 259 E--GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA 316 + F ++ R E LG+ F ++ + + Sbjct: 201 PRDWLGEQFFIEAEHLKKVNEKAYRHEYLGEVTGTGGEVF---TNVKARKINDEEIKAFD 257 Query: 317 PLIMGCDIAGEGGDKTVVVF 336 + G D G D + Sbjct: 258 RIKRGLDF-GYAVDPAAYIV 276 >gi|188494674|ref|ZP_03001944.1| gp33 TerL [Escherichia coli 53638] gi|188489873|gb|EDU64976.1| gp33 TerL [Escherichia coli 53638] Length = 539 Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 44/365 (12%), Positives = 94/365 (25%), Gaps = 40/365 (10%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIK--------GKPLEHF 48 P + + L + + E + + K F WG+ G P+ Sbjct: 12 PDYQMVFEWRMERLQRIRQNPEILPALKQFYRTNPAQFIIDWGMTTDPRNIDYGLPVTIP 71 Query: 49 SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108 Q E++ + + N R +G + + L M Sbjct: 72 FLLFPKQEEWIHWIMERWSNRENGITDKS--------REMGLSWTAIGLACSLCLFNKEM 123 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 I + E + ++ + + ++ +A + Sbjct: 124 VIGFGSRKEEYV-DSTGDPKALFWKARKFVETLPVEFRGSWSEKKHAPYMRVEFP----- 177 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 + DEA+ + T I S Sbjct: 178 ----ETGAVIKGEAGDNIGRGDRTTLYLVDEAAFLQRPLLIDAALSQTTRCR----IDLS 229 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 + +N F + + R+ D ++ + + + E+ + Sbjct: 230 SVNGMNNPFAQKRH--SGKIPVFTFHWRSDPRKDDEWYHKECEKI-DNPVIVAQELDLNY 286 Query: 289 PQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346 IP +++ A+ + D+A EG DK R G ++ + Sbjct: 287 QASAEGILIPSEWVQAAVDAHIRLGIQPGGQRLGAMDVADEGRDKNACSLRYGILLNDVQ 346 Query: 347 DWSAK 351 +WS K Sbjct: 347 EWSGK 351 >gi|56808979|ref|ZP_00366686.1| COG1783: Phage terminase large subunit [Streptococcus pyogenes M49 591] gi|71910836|ref|YP_282386.1| terminase large subunit [Streptococcus pyogenes MGAS5005] gi|71853618|gb|AAZ51641.1| terminase large subunit [Streptococcus pyogenes MGAS5005] Length = 424 Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 41/290 (14%), Positives = 84/290 (28%), Gaps = 29/290 (10%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 NP I A GRG GK++ A ++ + + ++ +CI ++ L+ +++ ++ +S Sbjct: 22 NPQILNIACKGGRGSGKSSNIA-FIISRLIIQYPVNAVCIRKTDNTLEQSVYEQIKWAIS 80 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 +F+ L + + I R + Sbjct: 81 EQGLERYFKFNKSPLR------------ITYIPRGNYIVFRGAQNPERIKSLKDSRFPFA 128 Query: 194 AVFNDE-ASGTPDIINKSILGFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFNIPLED 247 + +E A + K+I + T N R W + + Sbjct: 129 IGWIEELAEFKTEDEVKTITNSLLRGELGDGLFYKFFYTYNPPKRKQSWVNKKYESQFQP 188 Query: 248 WKRY--QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA 305 + + I F + R E LG+ +P + + Sbjct: 189 SNTFVHASTYKDNPFIAKEFIAEAEATRERSERRYRWEYLGEAIGSG---VVPFDNLRFE 245 Query: 306 MSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR----GNIIEHIFDWSAK 351 + + + G D G D V N I I ++ + Sbjct: 246 RITDEQVADFDNIRNGID-YGYATDPLAFVRWHYDKKKNGIYAIDEYYGQ 294 >gi|238765385|ref|ZP_04626308.1| Gp33 TerL [Yersinia kristensenii ATCC 33638] gi|238696377|gb|EEP89171.1| Gp33 TerL [Yersinia kristensenii ATCC 33638] Length = 501 Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 37/267 (13%), Positives = 78/267 (29%), Gaps = 19/267 (7%) Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 R +G + + + L M I + E + +T + ++ F Sbjct: 64 REMGLSWTSIGLACSLCLFNKEMVIGFGSRKEEYVDSTGDPK-----ALFWKARKFVETL 118 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 S W + M ++ + + + F DE++ Sbjct: 119 PSEFRGSWSEKKHAPYMRVEFPDTGAVIKGEAGDNIG-----RGDRTTLYFVDESAFLQR 173 Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265 + T I S+ +N F + + R+ D + Sbjct: 174 PLLIDAALSQTTRCR----IDLSSVNGMNNPFAQKRHGGK--IPVFTFHWRSDPRKDDEW 227 Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD--LYAPLIMGCD 323 + + + V E+ + IP +++ A+ D + D Sbjct: 228 YRKECEKI-DNPVVVAQELDLNYQASAEGILIPSEWVQAAIDAHIHLDIQPSGARLGAMD 286 Query: 324 IAGEGGDKTVVVFRRGNIIEHIFDWSA 350 +A EG DK R G +++ + +WS Sbjct: 287 VADEGRDKNGFAIRYGFLLQDVKEWSG 313 >gi|254504019|ref|ZP_05116170.1| conserved hypothetical protein [Labrenzia alexandrii DFL-11] gi|222440090|gb|EEE46769.1| conserved hypothetical protein [Labrenzia alexandrii DFL-11] Length = 438 Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 27/251 (10%), Positives = 61/251 (24%), Gaps = 31/251 (12%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTR----PG--MSIICIANSETQLKNTLWAEVSKWLSML 135 + GRG GKT A + PG I + + ++ + VS L++ Sbjct: 53 LMGGRGAGKTRAGAEWIRARALGHGWCEPGFAGRIALVGETYADVREVMVEGVSGLLAVH 112 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 P + + Sbjct: 113 PGGERPQWTPSRRRLE------------------WPNGAVAQTFSAEDPEALRGPQFDIA 154 Query: 196 FNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253 + DE + + + + R + + T R + Sbjct: 155 WCDELAKWTYAEETFDMLQFGLRLGSKPRQ--LITTTPRPVPLLKRLMKQAGTAIT--HA 210 Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 T+ + + + + R E+ G+ + + + +E A A + Sbjct: 211 PTKANALFLAPGFLEAVVGRYGGTRLGRQELDGELIEDRPDALWSRDGLEAARV-AAAPE 269 Query: 314 LYAPLIMGCDI 324 +++ D Sbjct: 270 DLTRIVIAIDP 280 >gi|126725398|ref|ZP_01741240.1| Putative large terminase [Rhodobacterales bacterium HTCC2150] gi|126704602|gb|EBA03693.1| Putative large terminase [Rhodobacterales bacterium HTCC2150] Length = 420 Score = 76.1 bits (185), Expect = 8e-12, Method: Composition-based stats. Identities = 38/305 (12%), Positives = 79/305 (25%), Gaps = 36/305 (11%) Query: 70 VNNSNPTIFKCAIS-AGRGIGKTTLNAWMMLWLI------STRPGMSIICIANSETQLKN 122 ++ + GRG GKT A + + + + + Q + Sbjct: 16 QVAPLGEDWRTWVCLGGRGAGKTRAGAEWVRSEVEGATATCEGRSKRVALVGETIDQARE 75 Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182 + S L+ P E Q+ T Sbjct: 76 VMVFGESGILACCPPDRRPEWQAGRKRL------------------VWPNGATAQIFSAH 117 Query: 183 TFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240 A + DE + + + + R I+T+ R + Sbjct: 118 DPESLRGPQFDAAWVDELAKWKRAEEAWDQLQFGLRLRDAPR-QIVTTTPRNVA--VLKD 174 Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 + + F E I ++ + R E+ G+ + + Sbjct: 175 LMKQETTVVTSAPTKANRAYLAASFLEDIHRKFAGT-RLGRQELEGELVEDAEGAMWTSS 233 Query: 301 YIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETN 357 +E E + +++ D A D +V + W A +I++ + Sbjct: 234 MLEAGRIDEFP--EFDRIVVAVDPPVTATSNSDLCGIVVVGACLQGPPQSWQAYVIEDCS 291 Query: 358 QEGCP 362 +G P Sbjct: 292 IKGTP 296 >gi|268597147|ref|ZP_06131314.1| phage terminase [Neisseria gonorrhoeae FA19] gi|268550935|gb|EEZ45954.1| phage terminase [Neisseria gonorrhoeae FA19] Length = 426 Score = 76.1 bits (185), Expect = 9e-12, Method: Composition-based stats. Identities = 33/279 (11%), Positives = 74/279 (26%), Gaps = 26/279 (9%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 P +K G K+ A +L L + RP + I+C + +++++ + + Sbjct: 20 FKPCRYKVMYGGRGGG-KSHGAASALLALGAQRP-LRILCAREIQKSMRDSVHRLLKDKV 77 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 + L H++E+ + + + S Sbjct: 78 AQLGLGHFYEITD--------------FEIRGANGTLFVFSGLQS---HTVDSIKSFEGI 120 Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRY 251 V+ +E G + + + + N Y F +P ED Sbjct: 121 DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITL--NPDMETDETYRRFIAMPSEDTWLC 178 Query: 252 QIDTRTVEGIDSGFHEGI-ISRYGLDSDVARIEILGQFPQQEVNNFIP---HNYIEEAMS 307 +I+ R + ++ + + G+ + Sbjct: 179 EINWRDNPWFPEALNRERLKAQRSMSKEDYGHIWEGRPRMVSEGAVYRHEIQDAFHSGRV 238 Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346 D P+ D+ +V R + I Sbjct: 239 TLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLTSVRIIG 277 >gi|240081035|ref|ZP_04725578.1| putative phage associated protein [Neisseria gonorrhoeae FA19] gi|240117647|ref|ZP_04731709.1| putative phage associated protein [Neisseria gonorrhoeae PID1] gi|240123201|ref|ZP_04736157.1| putative phage associated protein [Neisseria gonorrhoeae PID332] gi|268603349|ref|ZP_06137516.1| phage terminase [Neisseria gonorrhoeae PID1] gi|268681827|ref|ZP_06148689.1| phage terminase [Neisseria gonorrhoeae PID332] gi|268587480|gb|EEZ52156.1| phage terminase [Neisseria gonorrhoeae PID1] gi|268622111|gb|EEZ54511.1| phage terminase [Neisseria gonorrhoeae PID332] Length = 424 Score = 76.1 bits (185), Expect = 9e-12, Method: Composition-based stats. Identities = 33/279 (11%), Positives = 74/279 (26%), Gaps = 26/279 (9%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 P +K G K+ A +L L + RP + I+C + +++++ + + Sbjct: 18 FKPCRYKVMYGGRGGG-KSHGAASALLALGAQRP-LRILCAREIQKSMRDSVHRLLKDKV 75 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 + L H++E+ + + + S Sbjct: 76 AQLGLGHFYEITD--------------FEIRGANGTLFVFSGLQS---HTVDSIKSFEGI 118 Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRY 251 V+ +E G + + + + N Y F +P ED Sbjct: 119 DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITL--NPDMETDETYRRFIAMPSEDTWLC 176 Query: 252 QIDTRTVEGIDSGFHEGI-ISRYGLDSDVARIEILGQFPQQEVNNFIP---HNYIEEAMS 307 +I+ R + ++ + + G+ + Sbjct: 177 EINWRDNPWFPEALNRERLKAQRSMSKEDYGHIWEGRPRMVSEGAVYRHEIQDAFHSGRV 236 Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346 D P+ D+ +V R + I Sbjct: 237 TLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLTSVRIIG 275 >gi|240115343|ref|ZP_04729405.1| putative phage associated protein [Neisseria gonorrhoeae PID18] Length = 424 Score = 75.8 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 33/279 (11%), Positives = 74/279 (26%), Gaps = 26/279 (9%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 P +K G K+ A +L L + RP + I+C + +++++ + + Sbjct: 18 FKPCRYKVMYGGRGGG-KSHGAASALLALGAQRP-LRILCAREIQKSMRDSVHRLLKDKV 75 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 + L H++E+ + + + S Sbjct: 76 AQLGLGHFYEITD--------------FEIRGANGTLFVFSGLQS---HTVDSIKSFEGI 118 Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRY 251 V+ +E G + + + + N Y F +P ED Sbjct: 119 DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITL--NPDMETDETYRRFIAMPSEDTWLC 176 Query: 252 QIDTRTVEGIDSGFHEGI-ISRYGLDSDVARIEILGQFPQQEVNNFIP---HNYIEEAMS 307 +I+ R + ++ + + G+ + Sbjct: 177 EINWRDNPWFPEALNRERLKAQRSMSKEDYGHIWEGRPRMVSEGAVYRHEIQDAFHSGRV 236 Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346 D P+ D+ +V R + I Sbjct: 237 TLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLTSVRIIG 275 >gi|323173153|gb|EFZ58784.1| gp33 TerL protein [Escherichia coli LT-68] Length = 539 Score = 75.8 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 45/365 (12%), Positives = 95/365 (26%), Gaps = 40/365 (10%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIK--------GKPLEHF 48 P + + L + + E + + K F WG+ G P+ Sbjct: 12 PDYQMVFEWRMERLQRIRQNPEILPALKQFYRTNPAQFIIDWGMTTDPRNIDYGLPVTIP 71 Query: 49 SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108 Q E++ + + N R +G + + L M Sbjct: 72 FLLFPKQEEWIHWIMERWSNRENGITEKS--------REMGLSWTAIGLACSLCLFNKEM 123 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 I + E + ++ + + ++ +A + Sbjct: 124 VIGFGSRKEEYV-DSTGDPKALFWKARKFVETLPVEFRGSWSEKKHAPYMRVEFP----- 177 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 + F DEA+ + T I S Sbjct: 178 ----ETGAVIKGEAGDNIGRGDRTTLYFVDEAAFLQRPLLIDAALSQTTRCR----IDLS 229 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 + +N F + + R+ D ++ + + + E+ + Sbjct: 230 SVNGMNNPFAQKRH--SGKIPVFTFHWRSDPRKDDEWYHKECEKI-DNPVIVAQELDLNY 286 Query: 289 PQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346 IP +++ A+ + D+A EG DK R G ++ + Sbjct: 287 QASAEGILIPSEWVQAAVDAHIRLGIQPGGQRLGAMDVADEGRDKNACSLRYGILLNDVQ 346 Query: 347 DWSAK 351 +WS K Sbjct: 347 EWSGK 351 >gi|325529303|gb|EGD06247.1| phage terminase, large subunit [Burkholderia sp. TJI49] Length = 411 Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 38/273 (13%), Positives = 72/273 (26%), Gaps = 33/273 (12%) Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-SIICIANSETQLKNTLWAEVSKWLS 133 P +K A GRG GK+ LWL +C+ + L+ ++ + + Sbjct: 18 PARYKGA-HGGRGSGKSHFFGE--LWLEENVSDKFDFVCLRETLKSLEFSVKKLLEAKIE 74 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 +FE+Q + + E + Sbjct: 75 AFNAGDYFEVQDRRILSRHGGVTIFEG-----------------MQNHTADSIKSLEGFD 117 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN--IPLEDWKRY 251 + +EA + + + W N + + P D Sbjct: 118 RAWFEEAQNATEKSLTLLRPTLRKPGSQ-LWFGW-NPGKPTDPIDVLLRGDEPPPDSIVV 175 Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311 + + + E + D D LG + Q+ + +E E Sbjct: 176 EANFMDNPWLPRELQEEMEYDKRRDPDKYAHVWLGGYQQRSEARVFKNWRVE-----EFE 230 Query: 312 DDLYAPLIMGCDIAGEGGDKTVV--VFRRGNII 342 +G D G D +V+ GN + Sbjct: 231 RPEGTVFRLGAD-WGFASDPSVLIRCDIDGNRL 262 >gi|62362371|ref|YP_224236.1| putative terminase large subunit [Listonella phage phiHSIC] gi|58219993|gb|AAW67505.1| putative terminase large subunit [Listonella phage phiHSIC] Length = 408 Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 35/268 (13%), Positives = 73/268 (27%), Gaps = 31/268 (11%) Query: 70 VNNSNPTIFKCAISAGRGIGKTTLNA-WMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128 F+ A + RG GK+ A +W M I+C + +K + AE+ Sbjct: 17 EQPRGAVRFRGAYGS-RGSGKSFNFAKMAAIWGAI--EKMRILCTRELQVSIKESFHAEL 73 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188 ++ W + + + + + T + R Sbjct: 74 KN----------------AIKSDEWLSSIYDVGIDYIRNNNNGTEFLFKGLRHGMGSVKS 117 Query: 189 NTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI-PLED 247 +EA P+ +L + W++ N R+ F +D Sbjct: 118 TAQIDLTIVEEAEDVPENAWVELLPTIFRTDKAECWVIW-NPRKKGSPVDKRFRQFKPDD 176 Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYG-LDSDVARIEILGQFPQQEVNNFIPHNYIEE-A 305 +++ G + + ++ LG + + + +E+ Sbjct: 177 AVVVEMNYYDNPFFPKGLEDLRRHDEDTMPPELYAHVWLGAYYEHTEAQVFKNWKVEQVN 236 Query: 306 MSREAIDDLYAPLIMGCDIAGEGGDKTV 333 + G D G D T Sbjct: 237 TNGWEGPYY------GLDF-GFSQDPTA 257 >gi|333006277|gb|EGK25786.1| gp33 TerL [Shigella flexneri K-218] Length = 540 Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 39/356 (10%), Positives = 86/356 (24%), Gaps = 24/356 (6%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIKGKPLEHFSQPHRWQL 56 P + + L + + E + + K F WG+ P Sbjct: 12 PDYQMVFEWRMERLQRIRQNPEILPALKQFYRTNPAQFIIDWGMTTDPRNIDYGLPVTIP 71 Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 + + R +G + + L M I + Sbjct: 72 FLLFPKQEEWIHWIMERWGNRENGITEKSREMGLSWTAIGLACSLCLFNKEMVIGFGSRK 131 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 E + ++ + + ++ +A + Sbjct: 132 EEYV-DSTGDPKALFWKARKFVETLPVEFRGSWDEKKHAPYMRVEFP---------ETGA 181 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236 + DE++ + T I S+ + Sbjct: 182 VIKGEAGDNIGRGDRTTLYLVDESAFLQRPLLIDAALSQTTRCR----IDLSSVNGMANP 237 Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 F + + R D ++ + + V E+ + Sbjct: 238 FAQKRHGGK--IPVFTFHWRDDPRKDEEWYRRECEKI-DNPVVVAQELDLNYSASAEGVL 294 Query: 297 IPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350 IP +++ A+ + D+A EG DK R G ++E++ +WS Sbjct: 295 IPSEWVQAAVDAHIKLGIQPTGKRLGAMDVADEGRDKNSFSTRHGFLLENVREWSG 350 >gi|22855048|ref|NP_690654.1| hypothetical protein SPP1p003 [Bacillus phage SPP1] gi|1729903|sp|P54308|TERL_BPSPP RecName: Full=Large terminase protein; AltName: Full=DNA-packaging protein G2P; AltName: Full=Terminase large subunit gi|15466|emb|CAA39537.1| terminase [Bacillus phage SPP1] gi|2764840|emb|CAA66573.1| unnamed protein product [Bacillus phage SPP1] Length = 422 Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 41/284 (14%), Positives = 80/284 (28%), Gaps = 27/284 (9%) Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124 K + GRG K+T A ++ L+ P ++ + I ++ ++ Sbjct: 14 FLEVWRTVKAAQHLKYVLKGGRGSAKSTHIAMWIILLMMMMP-ITFLVIRRVYNTVEQSV 72 Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184 + ++ + + ML H +++ L + + I S+ Sbjct: 73 FEQLKEAIDMLEVGHLWKVSKSPLRLT-YIPRGNSIIFRGGDDVQKIKSIKASKFPVAGM 131 Query: 185 VGPHNTHGMAVFNDE-ASGTPDIINKSILGFFTE----LNPNRFWIMTSNTR-RLNGWFY 238 + +E A + I + + N R W Sbjct: 132 -----------WIEELAEFKTEEEVSVIEKSVLRAELPPGCRYIFFYSYNPPKRKQSWVN 180 Query: 239 DIFNIPLEDWKRY--QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 +FN + + F E + R E LG+ + Sbjct: 181 KVFNSSFLPANTFVDHSTYLQNPFLSKAFIEEAEEVKRRNELKYRHEYLGE---ALGSGV 237 Query: 297 IPHN--YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338 +P IEE + +A + + G D G G D V Sbjct: 238 VPFENLQIEEGIITDAEVARFDNIRQGLDF-GYGPDPLAFVRWH 280 >gi|268601026|ref|ZP_06135193.1| phage terminase [Neisseria gonorrhoeae PID18] gi|268585157|gb|EEZ49833.1| phage terminase [Neisseria gonorrhoeae PID18] Length = 417 Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 33/279 (11%), Positives = 74/279 (26%), Gaps = 26/279 (9%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 P +K G K+ A +L L + RP + I+C + +++++ + + Sbjct: 11 FKPCRYKVMYGGRGGG-KSHGAASALLALGAQRP-LRILCAREIQKSMRDSVHRLLKDKV 68 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 + L H++E+ + + + S Sbjct: 69 AQLGLGHFYEITD--------------FEIRGANGTLFVFSGLQS---HTVDSIKSFEGI 111 Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRY 251 V+ +E G + + + + N Y F +P ED Sbjct: 112 DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITL--NPDMETDETYRRFIAMPSEDTWLC 169 Query: 252 QIDTRTVEGIDSGFHEGI-ISRYGLDSDVARIEILGQFPQQEVNNFIP---HNYIEEAMS 307 +I+ R + ++ + + G+ + Sbjct: 170 EINWRDNPWFPEALNRERLKAQRSMSKEDYGHIWEGRPRMVSEGAVYRHEIQDAFHSGRV 229 Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346 D P+ D+ +V R + I Sbjct: 230 TLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLTSVRIIG 268 >gi|332088044|gb|EGI93169.1| gp33 TerL [Shigella boydii 5216-82] Length = 539 Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 45/365 (12%), Positives = 95/365 (26%), Gaps = 40/365 (10%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIK--------GKPLEHF 48 P + + L + + E + + K F WG+ G P+ Sbjct: 12 PDYQMVFEWRMERLQRIRQNPEILPALKQFYRTNPAQFIIDWGMTTDPRNIDYGLPVTIP 71 Query: 49 SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108 Q E++ + + N R +G + + L M Sbjct: 72 FLLFPKQEEWIHWIMERWSNRENGITDKS--------REMGLSWTAIGLACSLCLFNKEM 123 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 I + E + ++ + + ++ +A + Sbjct: 124 VIGFGSRKEEYV-DSTGDPKALFWKARKFVETLPVEFRGSWSEKKHAPYMRVEFP----- 177 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 + F DEA+ + T I S Sbjct: 178 ----ETGAVIKGEAGDNIGRGDRTTLYFVDEAAFLQRPLLIDAALSQTTRCR----IDLS 229 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 + +N F + + R+ D ++ + + + E+ + Sbjct: 230 SVNGMNNPFAQKRH--SGKIPVFTFHWRSDPRKDDEWYHKECEKI-DNPVIVAQELDLNY 286 Query: 289 PQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346 IP +++ A+ + D+A EG DK R G ++ + Sbjct: 287 QASAEGILIPSEWVQAAVDAHIRLGIQPGGQRLGAMDVADEGRDKNACSLRYGILLNDVQ 346 Query: 347 DWSAK 351 +WS K Sbjct: 347 EWSGK 351 >gi|217979215|ref|YP_002363362.1| hypothetical protein Msil_3091 [Methylocella silvestris BL2] gi|217504591|gb|ACK52000.1| conserved hypothetical protein [Methylocella silvestris BL2] Length = 490 Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 41/296 (13%), Positives = 68/296 (22%), Gaps = 50/296 (16%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM-------LWLISTRPGMS--II 111 + C + GR GKT A + W PG ++ Sbjct: 44 ELFRQCTGRAEAQGAAFGFLWLVIGRRGGKTFAMALLACFLGLFRDWTSRLAPGERAVVL 103 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 +A Q K L +S L E I Sbjct: 104 LVAADREQAK-ILRRYISGILEAP--------------MLAKMVEAETADTIELKGRVVI 148 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--------PDIINKSILGFFTELNPNRF 223 T S + DE + + +I + Sbjct: 149 EVATCS------YRTVRGRSVCVALLDEVAFWRRDDSVSPDTEVFVAIRASMATFGDDAM 202 Query: 224 WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT-----RTVEGIDSGFHEGIISRYGLDSD 278 ++ S+ +G + + + + F + I D Sbjct: 203 MVVASSPYSKSGLLWTNYRKYFGKPDAQNLVWQAATRTMNPSVPQSFIDAEIE---RDPV 259 Query: 279 VARIEILGQFPQQEVNNFIPHNYIEEAM---SREAIDDLYAPLIMGCDIAGEGGDK 331 A E QF + +V F+ IE + RE + D +G D Sbjct: 260 SAAAEYGAQF-RTDVAAFVDREAIEACVASGRRELPPAPGVRYVAFADPSGGSSDS 314 >gi|323186590|gb|EFZ71927.1| gp33 TerL protein [Escherichia coli 1357] Length = 503 Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 45/365 (12%), Positives = 94/365 (25%), Gaps = 40/365 (10%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIK--------GKPLEHF 48 P + + L + + E + K F WG+ G P+ Sbjct: 12 PDYQMVFEWRMERLQRIRQNPEILPVLKQFYRTNPAQFIIDWGMTTDPRNIDYGLPVTIP 71 Query: 49 SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108 Q E++ + + N R +G + + L M Sbjct: 72 FLLFPKQEEWIHWIMERWSNRENGITEKS--------REMGLSWTAIGLACSLCLFNKEM 123 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 I + E + ++ + + ++ +A + Sbjct: 124 VIGFGSRKEEYV-DSTGDPKALFWKARKFVETLPVEFRGSWSEKKHAPYMRVEFP----- 177 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 + F DEA+ + T I S Sbjct: 178 ----ETGAVIKGEAGDNIGRGDRTTLYFVDEAAFLQRPLLIDAALSQTTRCR----IDLS 229 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 + +N F + + R+ D ++ + + + E+ + Sbjct: 230 SVNGMNNPFAQKRH--SGKIPVFTFHWRSDPRKDDEWYHKECEKI-DNPVIVAQELDLNY 286 Query: 289 PQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346 IP +++ A+ + D+A EG DK R G ++ + Sbjct: 287 QASAEGILIPSEWVQAAVDAHIRLGIQPGGQRLGAMDVADEGRDKNACSLRYGILLNDVQ 346 Query: 347 DWSAK 351 +WS K Sbjct: 347 EWSGK 351 >gi|328472888|gb|EGF43736.1| terminase large subunit [Vibrio parahaemolyticus 10329] Length = 431 Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 36/284 (12%), Positives = 68/284 (23%), Gaps = 42/284 (14%) Query: 80 CAISAGRGIGKTTLNAWMMLW--LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + GRG GKT ML + + +T +++++ + VS + Sbjct: 27 IVLKGGRGSGKTFAIICYMLEQSFEEKYRDSLFLVLREIQTSIEDSVHSVVSDLIKQAGL 86 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 +F++ + E + S + + G H VF Sbjct: 87 EQYFKITHSKIINKLTNVEFAFTGLRSTGG-------KTSFSQVNKIKGKH--KVRMVFM 137 Query: 198 DEASGTPDIINKSILGFF--------TELNPNRFWIMTS---------------NTRRLN 234 DEA + T + N Sbjct: 138 DEAQDASQDSLDVLFPTVNRSGNVSFTSEYERLLRLAFGAEEVDLTEARFFFAMNPNFAE 197 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGI--DSGFHEGIISRYGLDSDVARIEILGQFPQQE 292 + I+ + D+ E G LG+ + Sbjct: 198 DPVITKVRSFGDRAVIKHINIFDLPKRYQDTQLLEQAERERGE--VTWPHVWLGEPSPKI 255 Query: 293 VNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 E + D+ + D + +G D T + F Sbjct: 256 SGYPFA----ETPVVTAEEDEELLQCVAFLDPSYKGDDFTALSF 295 >gi|282878109|ref|ZP_06286910.1| phage terminase, large subunit, PBSX family [Prevotella buccalis ATCC 35310] gi|281299767|gb|EFA92135.1| phage terminase, large subunit, PBSX family [Prevotella buccalis ATCC 35310] Length = 423 Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 32/295 (10%), Positives = 75/295 (25%), Gaps = 42/295 (14%) Query: 62 VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM--LWLISTRPGM---SIICIANS 116 + H +N F I+ GR GK+ + + L T I+ + Sbjct: 2 IKTHKVYYPIYANKDKFIILITGGRASGKSHFVSSFLERLTFEMTPVDKIVHQILYTRYT 61 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 ++ E + + + +F + + ++ + + T Sbjct: 62 MVSANISIIPEFLEKAELDGTQKYFRSTRSDVTNRMTGSTVMFRGLK-----------TS 110 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 S + H DEA + ++I+ + + N N Sbjct: 111 SGNQTAKLKSIHG--ITTFVVDEAEEWVSEKEFETIMLSIRQKGIQNRIFIIMNPTDNNH 168 Query: 236 WFYDIFNIPLED---WKRYQIDTRTVEGI--------------DSGFHEGIISRYGLDSD 278 W Y F + + T + F + + + Sbjct: 169 WVYKRFIENTHKEVMYDGIPVQISTHPNVLHIHTTYLDNLENLSQEFINEVEDMKANNPE 228 Query: 279 VARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTV 333 ++G++ H + + + + +G D D + Sbjct: 229 KYAHTVMGRWADVAEGAVFKHIGVVKEFPKWCK-----KVAIGLDFGYT-NDVSA 277 >gi|16127022|ref|NP_421586.1| hypothetical protein CC_2790 [Caulobacter crescentus CB15] gi|221235816|ref|YP_002518253.1| phage DNA packaging protein [Caulobacter crescentus NA1000] gi|13424390|gb|AAK24754.1| conserved hypothetical protein [Caulobacter crescentus CB15] gi|220964989|gb|ACL96345.1| phage DNA packaging protein [Caulobacter crescentus NA1000] Length = 567 Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 79/301 (26%), Gaps = 28/301 (9%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +P Q A+ + + + GRG GKT A + W P Sbjct: 165 EPEDQQRLLSAALAEPLIHQLASPFSPWSTWLMLGGRGAGKTFAGARWITWNALAYPSQ- 223 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I + ++ + S +M + ++ Sbjct: 224 -ALIGPTLHDVREVMIEGPSGLKAMGGPAYRPRWEASRRRL------------------V 264 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 + A + DE P + F ++ + Sbjct: 265 WPNGAVAYAFSAEDPESLRGPQFHAAWADEFCAWPKPAETLAMLRFGLRLGEDPRLVVTT 324 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 T + + + P + + F + S YG +A E+ G Sbjct: 325 TPKPHRALKTLMAEP-GVALTRAGTSANAGNLAPAFLRTLASLYGGT-RLAAQELDGVVV 382 Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD-IAGEGGDKTVVVF--RRGNIIEHIF 346 + + F + +R A D +++ D A GD +V RR + + Sbjct: 383 ETDGGLFRAEDLARCRAARPARLD---RVVVAVDPPATATGDACGIVVVGRRDDRAFVLA 439 Query: 347 D 347 D Sbjct: 440 D 440 >gi|332759085|gb|EGJ89395.1| gp33 TerL [Shigella flexneri 4343-70] Length = 519 Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 31/267 (11%), Positives = 69/267 (25%), Gaps = 19/267 (7%) Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 R +G + + L M I + E + ++ + + ++ Sbjct: 80 REMGLSWTAIGLACSLCLFNKEMVIGFGSRKEEYV-DSTGDPKALFWKARKFVETLPVEF 138 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 +A + + DE++ Sbjct: 139 RGSWDEKKHAPYMRVEFP---------ETGAVIKGEAGDNIGRGDRTTLYLVDESAFLQR 189 Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265 + T I S+ + F + + R D + Sbjct: 190 PLLIDAALSQTTRCR----IDLSSVNGMANPFAQKRHGGK--IPVFTFHWRDDPRKDEEW 243 Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCD 323 + + + V E+ + IP +++ A+ + D Sbjct: 244 YRRECEKI-DNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDAHIKLGIQPTGKRLGAMD 302 Query: 324 IAGEGGDKTVVVFRRGNIIEHIFDWSA 350 +A EG DK R G ++E++ +WS Sbjct: 303 VADEGRDKNSFSTRHGFLLENVREWSG 329 >gi|194098237|ref|YP_002001293.1| putative phage associated protein [Neisseria gonorrhoeae NCCP11945] gi|240125445|ref|ZP_04738331.1| putative phage associated protein [Neisseria gonorrhoeae SK-92-679] gi|268684040|ref|ZP_06150902.1| phage terminase [Neisseria gonorrhoeae SK-92-679] gi|193933527|gb|ACF29351.1| putative phage associated protein [Neisseria gonorrhoeae NCCP11945] gi|268624324|gb|EEZ56724.1| phage terminase [Neisseria gonorrhoeae SK-92-679] Length = 424 Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 34/279 (12%), Positives = 76/279 (27%), Gaps = 26/279 (9%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 P +K G K+ A +L L + RP + I+C+ + +++T+ + + Sbjct: 18 FKPCRYKVMYGGRGGG-KSHGAASALLALGAQRP-LRILCVREIQKSMRDTVHRLLKDKV 75 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 + L H++E+ + + + S Sbjct: 76 AQLGLGHFYEITD--------------FEIRGANGTLFVFSGLQS---HTVDSIKSFEGI 118 Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRY 251 V+ +E G + + + + N Y F +P ED Sbjct: 119 DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITL--NPDMETDETYRRFIAMPSEDTWLC 176 Query: 252 QIDTRTVEGIDSGFHEGI-ISRYGLDSDVARIEILGQFPQQEVNNFIP---HNYIEEAMS 307 +I+ R + ++ ++ + G+ + Sbjct: 177 EINWRDNPWFPEALNRERLKAQRSMNKEDYGNIWEGRPRMVSEGAVYRHEIQDAFHSGRV 236 Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346 D P+ D+ +V R + I Sbjct: 237 TLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLTSVRIIG 275 >gi|169344384|ref|ZP_02865357.1| phage terminase, large subunit, pbsx family [Clostridium perfringens C str. JGS1495] gi|169297509|gb|EDS79616.1| phage terminase, large subunit, pbsx family [Clostridium perfringens C str. JGS1495] Length = 415 Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 40/303 (13%), Positives = 84/303 (27%), Gaps = 32/303 (10%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 +++ + V + + F G G GK+ M++ PG + + Sbjct: 3 RIKINKRVFNEVYLPQLQNYEKRFNVFYGGG-GSGKSHFVVQKMIYKYLKYPGRKCLVVR 61 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 + LK +++A LS ++ L L D + Sbjct: 62 KVNSTLKESIFALFRSVLSDWQIYDECKINKTDLTIELPNKSLFIFKGIDDPEKIKSIAG 121 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 + +E + + + NP + N + Sbjct: 122 IDD-----------------IVVEECTEIDEFDFDQLNLRLRSKNPYNQIHVMFNPVSKS 164 Query: 235 GWFYDIF---NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291 W Y + +D + + + + + ++ + RI LG+F Sbjct: 165 NWVYKRWFKNGYDTKDTIVLHTTYKNNKFLPKDYIDSLLKLEKDNPVYFRIYALGEFATL 224 Query: 292 EVNNFIPHNYIEEAMSRE--AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS 349 + I N+ EE+ + ++ I D D T + I + Sbjct: 225 --DKLIYTNWKEESFDYKEILKNNRNTKAIFSLDFGYT-NDPTAF------VCSIIDKIN 275 Query: 350 AKL 352 KL Sbjct: 276 KKL 278 >gi|77463023|ref|YP_352527.1| putative large terminase [Rhodobacter sphaeroides 2.4.1] gi|126461897|ref|YP_001043011.1| hypothetical protein Rsph17029_1129 [Rhodobacter sphaeroides ATCC 17029] gi|77387441|gb|ABA78626.1| Putative large terminase [Rhodobacter sphaeroides 2.4.1] gi|126103561|gb|ABN76239.1| protein of unknown function DUF264 [Rhodobacter sphaeroides ATCC 17029] Length = 414 Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 37/288 (12%), Positives = 75/288 (26%), Gaps = 35/288 (12%) Query: 81 AISAGRGIGKTTLNAWMMLWLIS-TRPG-----MSIICIANSETQLKNTLWAEVSKWLSM 134 + GRG GKT A + + RPG + + + Q + + S L+ Sbjct: 21 VVMGGRGAGKTRAGAEWVRAEVEGARPGDPGRSRHVALVGETIDQAREVMVFGESGILAC 80 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 P E ++ A Sbjct: 81 SPPDRRPEWEAGRRRL------------------VWPNGAVAQIFSAHDPESLRGPQFDA 122 Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252 + DE + + + + R ++T+ R + + Sbjct: 123 AWADELAKWGRAEEAWDMLQFSLRLGDQPR-QVVTTTPRNV--PVLRHILDNPSTVMTHA 179 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + F + +RY + R E+ G + IE SR Sbjct: 180 PTEANRAYLARSFLAEVHARYDGT-RLGRQELEGLLLEDVEGALWTTARIEA--SRLEEP 236 Query: 313 DLYAPLIMGCDIAGEG---GDKTVVVFRRGNIIEHIFDWSAKLIQETN 357 +++ D G D+ ++ DW A ++++ + Sbjct: 237 GPLDRIVVAVDPPVTGTEASDECGILVVGARTAGPPQDWRAVVLEDAS 284 >gi|298290710|ref|YP_003692649.1| hypothetical protein Snov_0699 [Starkeya novella DSM 506] gi|296927221|gb|ADH88030.1| protein of unknown function DUF264 [Starkeya novella DSM 506] Length = 428 Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 46/297 (15%), Positives = 79/297 (26%), Gaps = 37/297 (12%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTR---PGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + GRG GKT A + L R P I +A S L+ + VS L++ P Sbjct: 42 VLGGRGAGKTRAGAEWVRALAFGRAGPPAGRIALVAESLGDLREVMVEGVSGLLAVHPRG 101 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + D A + D Sbjct: 102 ERPTWEPTRKRLE------------------WPNGAVAQGFSADDPESLRGPQFDAAWCD 143 Query: 199 EASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256 E + ++ R + T+ Sbjct: 144 ELAKWRYAQAAFDNLQFGLRLGARPRQMVTTT---PRPTTLLRALLADPRTAVTRMGTAE 200 Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DL 314 + F E ++ RY + R E+ G+ + + IE A + Sbjct: 201 NAAHLAPHFLETVVGRYAGT-RLGRQELDGELIEDRPDALWSRALIEAGREAAAPEMVRQ 259 Query: 315 YAPLIMGCDI---AGEGGDKTVVVF----RRGNIIEHIFDWSAKLIQETNQEGCPVG 364 +++ D + + D +V R G + + D SA+ + T G VG Sbjct: 260 MERIVVAVDPPASSRKHADACGLVAAGIDRDGL-VHVLADESAQGLTPTGWGGRAVG 315 >gi|221638881|ref|YP_002525143.1| hypothetical protein RSKD131_0782 [Rhodobacter sphaeroides KD131] gi|221159662|gb|ACM00642.1| Hypothetical Protein RSKD131_0782 [Rhodobacter sphaeroides KD131] Length = 432 Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 37/288 (12%), Positives = 75/288 (26%), Gaps = 35/288 (12%) Query: 81 AISAGRGIGKTTLNAWMMLWLIS-TRPG-----MSIICIANSETQLKNTLWAEVSKWLSM 134 + GRG GKT A + + RPG + + + Q + + S L+ Sbjct: 39 VVMGGRGAGKTRAGAEWVRAEVEGARPGDPGRSRHVALVGETIDQAREVMVFGESGILAC 98 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 P E ++ A Sbjct: 99 SPPDRRPEWEAGRKRL------------------VWPNGAVAQIFSAHDPESLRGPQFDA 140 Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252 + DE + + + + R ++T+ R + + Sbjct: 141 AWADELAKWGRAEEAWDMLQFSLRLGDQPR-QVVTTTPRNV--PVLRHILDNPSTVVTHA 197 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + F + +RY + R E+ G + IE SR Sbjct: 198 PTEANRAYLARSFLAEVHARYDGT-RLGRQELEGLLLEDVEGALWTTARIEA--SRLEEP 254 Query: 313 DLYAPLIMGCDIAGEG---GDKTVVVFRRGNIIEHIFDWSAKLIQETN 357 +++ D G D+ ++ DW A ++++ + Sbjct: 255 GPLDRIVVAVDPPVTGTEASDECGILVVGARTAGPPQDWRAVVLEDAS 302 >gi|94971392|ref|YP_593440.1| hypothetical protein Acid345_4366 [Candidatus Koribacter versatilis Ellin345] gi|94553442|gb|ABF43366.1| hypothetical protein Acid345_4366 [Candidatus Koribacter versatilis Ellin345] Length = 496 Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 39/316 (12%), Positives = 82/316 (25%), Gaps = 57/316 (18%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + + R +G TT A RPG + +A+ + ++ V +++ LP Sbjct: 76 RRNIVLKARQLGITTYVASRFFLSTIMRPGTVTVQVAH-DQTAAEEIFRIVHRFVENLPE 134 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + + L + + + ++ + HN H Sbjct: 135 EM--------RKGALTTSRLNTRQIVFPKLDSAYLVESAADVNAGRGLTIHNLH-----C 181 Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP------LEDWKRY 251 E + P + + + + ++ S G FYD + + + Sbjct: 182 SEVARWPGDAAEVLASLRAAVPKHGEIVLESTPNGAGGCFYDEWQHAEEKGYTQHFFPWW 241 Query: 252 QIDTRTVEGIDSGFHEGIISRYG-----LDSDVARIEILGQF-----------PQQ---- 291 + T+ S G + R E+ F P++ Sbjct: 242 WEKSYTIGHRAEELSPEEESLVGRYGLSREQIAFRRELQFNFGKLARQEYAETPEECFLA 301 Query: 292 EVNNFIPHNYIEE---------------AMSREAIDDLYAPLIMGCDIAGEG--GDKTVV 334 + IE+ + ++G D AG G GD Sbjct: 302 SGECVFEVDVIEKRLAELRGPVETRENGRIETYYPPVRGREYVIGVDPAGGGSEGDYAAA 361 Query: 335 VFRRGNIIEHIFDWSA 350 + + Sbjct: 362 QVIERSTGLQCAELRG 377 >gi|268594527|ref|ZP_06128694.1| phage terminase [Neisseria gonorrhoeae 35/02] gi|268547916|gb|EEZ43334.1| phage terminase [Neisseria gonorrhoeae 35/02] Length = 426 Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 34/279 (12%), Positives = 76/279 (27%), Gaps = 26/279 (9%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 P +K G K+ A +L L + RP + I+C+ + +++T+ + + Sbjct: 20 FKPCRYKVMYGGRGGG-KSHGAASALLALGAQRP-LRILCVREIQKSMRDTVHRLLKDKV 77 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 + L H++E+ + + + S Sbjct: 78 AQLGLGHFYEITD--------------FEIRGANGTLFVFSGLQS---HTVDSIKSFEGI 120 Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRY 251 V+ +E G + + + + N Y F +P ED Sbjct: 121 DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITL--NPDMETDETYRRFIAMPSEDTWLC 178 Query: 252 QIDTRTVEGIDSGFHEGI-ISRYGLDSDVARIEILGQFPQQEVNNFIP---HNYIEEAMS 307 +I+ R + ++ ++ + G+ + Sbjct: 179 EINWRDNPWFPEALNRERLKAQRSMNKEDYGNIWEGRPRMVSEGAVYRHEIQDAFHSGRV 238 Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346 D P+ D+ +V R + I Sbjct: 239 TLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLMSVRIIG 277 >gi|224984406|ref|YP_002641809.1| phage terminase, large subunit, pbsx family [Borrelia valaisiana VS116] gi|224497005|gb|ACN52640.1| phage terminase, large subunit, pbsx family [Borrelia valaisiana VS116] Length = 450 Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 43/288 (14%), Positives = 78/288 (27%), Gaps = 43/288 (14%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMS 109 Q E + ++ H K S G GKT L +++++ + + Sbjct: 49 QKEVLFDIESH----------DYSKVIFSGGIASGKTFLASYLLIKKLIENKSLYERDTN 98 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I NS L ++ K L + + +S EL Sbjct: 99 NFIIGNSIGLLMTNTIKQIEKICGFLGI-DYQKKKSGESFCKIAGLELN----------- 146 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 Y D F + ++ +EA+ ++ + I +N Sbjct: 147 -----IYGGRNRDAFSKIRGGNSAIIYVNEATVIHKETLLEVIKRLRKG--KSIIIFDTN 199 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 +F + + +K Y T + F E Y + G++ Sbjct: 200 PESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIETQEKLYKHFPAYKARVLYGEWI 259 Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336 + D + IM D A GGD T + Sbjct: 260 L-NESALFNEMIFN-------QDYEFKSPIMYIDPAFSVGGDNTAICV 299 >gi|26989017|ref|NP_744442.1| DNA maturase B [Pseudomonas putida KT2440] gi|24983840|gb|AAN67906.1|AE016423_1 DNA maturase B [Pseudomonas putida KT2440] Length = 562 Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 44/375 (11%), Positives = 81/375 (21%), Gaps = 84/375 (22%) Query: 27 SFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR 86 F+ F+ W P +P Q + + +C I A R Sbjct: 13 DFRKFIYLV--WKHLNLP-----EPTPVQYDIARYLQHGPR-----------RCVIEAFR 54 Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G+GK+ + A + WL+ P + I+ ++ S + M +H Sbjct: 55 GVGKSWVTAAFVCWLLWRNPQLRILVVSASSARADAFSSFVKRLIHEMPLLQHLKPGPDQ 114 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSE----------ERPDTFVGPHNTHGMAVF 196 + K I + E P+ ++ Sbjct: 115 IDKMVAFEVAPALPDQSPSVKSVGIMGQITGSRADIIIADDIEIPNNSATQMMRDKLSEA 174 Query: 197 NDEASGT-------------PDIINKSILGFFTELNPNR-FWIMTSNTRRLNGWFYD--- 239 E S+ E W Y Sbjct: 175 VKEFDAILKPLQSARIIYLGTPQCEMSLYNRLPERGYEIRVWPALY-PTLQKVPHYKGSL 233 Query: 240 --IFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG------QFPQQ 291 +E D ++ YG + + +FP + Sbjct: 234 APFITQAMEADPTLSGKPTDPRRFDEKDLMERMASYGRAGFALQFMLDTSLSDGDKFPLK 293 Query: 292 EVNNFI------------------------------PHNYIEEAMSREAIDDLYAPLIMG 321 + + + M + Y +M Sbjct: 294 VQDLMVMNLNPIMAHVKLAWAASPELCINDMPTVALTGDRFYRPMWHASEMSEYTGCVMA 353 Query: 322 CDIAGEGGDKTVVVF 336 D +G G D+T Sbjct: 354 IDPSGRGQDETGYAV 368 >gi|239998675|ref|ZP_04718599.1| putative phage associated protein [Neisseria gonorrhoeae 35/02] gi|317163958|gb|ADV07499.1| putative phage associated protein [Neisseria gonorrhoeae TCDC-NG08107] Length = 424 Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 34/279 (12%), Positives = 76/279 (27%), Gaps = 26/279 (9%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 P +K G K+ A +L L + RP + I+C+ + +++T+ + + Sbjct: 18 FKPCRYKVMYGGRGGG-KSHGAASALLALGAQRP-LRILCVREIQKSMRDTVHRLLKDKV 75 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 + L H++E+ + + + S Sbjct: 76 AQLGLGHFYEITD--------------FEIRGANGTLFVFSGLQS---HTVDSIKSFEGI 118 Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRY 251 V+ +E G + + + + N Y F +P ED Sbjct: 119 DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITL--NPDMETDETYRRFIAMPSEDTWLC 176 Query: 252 QIDTRTVEGIDSGFHEGI-ISRYGLDSDVARIEILGQFPQQEVNNFIP---HNYIEEAMS 307 +I+ R + ++ ++ + G+ + Sbjct: 177 EINWRDNPWFPEALNRERLKAQRSMNKEDYGNIWEGRPRMVSEGAVYRHEIQDAFHSGRV 236 Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346 D P+ D+ +V R + I Sbjct: 237 TLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLMSVRIIG 275 >gi|293399332|ref|ZP_06643497.1| PBSX family phage terminase, large subunit [Neisseria gonorrhoeae F62] gi|291610746|gb|EFF39856.1| PBSX family phage terminase, large subunit [Neisseria gonorrhoeae F62] Length = 426 Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 33/279 (11%), Positives = 75/279 (26%), Gaps = 26/279 (9%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 P +K G K+ A +L L + RP + I+C + +++++ + + Sbjct: 20 FKPCRYKVMYGGRGGG-KSHGAASALLALGAQRP-LRILCAREIQKSMRDSVHRLLKDKV 77 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 + L H++E+ + + + S Sbjct: 78 AQLGLGHFYEITD--------------FEIRGANGTLFVFSGLQS---HTVDSIKSFEGI 120 Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRY 251 V+ +E G + + + + N Y F +P ED Sbjct: 121 DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITL--NPDMETDETYRRFIAMPSEDTWLC 178 Query: 252 QIDTRTVEGIDSGFHEGI-ISRYGLDSDVARIEILGQFPQQEVNNFIP---HNYIEEAMS 307 +I+ R + ++ ++ + G+ + Sbjct: 179 EINWRDNPWFPEALNRERLKAQRSMNKEDYGNIWEGRPRMVSEGAVYRHEIQDAFHSGRV 238 Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346 D P+ D+ +V R + I Sbjct: 239 TLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLTSVRIIG 277 >gi|291044162|ref|ZP_06569878.1| phage terminase [Neisseria gonorrhoeae DGI2] gi|291012625|gb|EFE04614.1| phage terminase [Neisseria gonorrhoeae DGI2] Length = 426 Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 33/279 (11%), Positives = 75/279 (26%), Gaps = 26/279 (9%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 P +K G K+ A +L L + RP + I+C + +++++ + + Sbjct: 20 FKPCRYKVMYGGRGGG-KSHGAASALLALGAQRP-LRILCAREIQKSMRDSVHRLLKDKV 77 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 + L H++E+ + + + S Sbjct: 78 AQLGLGHFYEITD--------------FEIRGANGTLFVFSGLQS---HTVDSIKSFEGI 120 Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRY 251 V+ +E G + + + + N Y F +P ED Sbjct: 121 DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITL--NPDMETDETYRRFIAMPSEDTWLC 178 Query: 252 QIDTRTVEGIDSGFHEGI-ISRYGLDSDVARIEILGQFPQQEVNNFIP---HNYIEEAMS 307 +I+ R + ++ ++ + G+ + Sbjct: 179 EINWRDNPWFPEALNRERLKAQRSMNKEDYGNIWEGRPRMVSEGAVYRHEIQDAFHSGRV 238 Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346 D P+ D+ +V R + I Sbjct: 239 TLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLTSVRIIG 277 >gi|240014419|ref|ZP_04721332.1| putative phage associated protein [Neisseria gonorrhoeae DGI18] gi|240016852|ref|ZP_04723392.1| putative phage associated protein [Neisseria gonorrhoeae FA6140] gi|240120865|ref|ZP_04733827.1| putative phage associated protein [Neisseria gonorrhoeae PID24-1] gi|254493400|ref|ZP_05106571.1| phage terminase [Neisseria gonorrhoeae 1291] gi|226512440|gb|EEH61785.1| phage terminase [Neisseria gonorrhoeae 1291] Length = 424 Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 33/279 (11%), Positives = 75/279 (26%), Gaps = 26/279 (9%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 P +K G K+ A +L L + RP + I+C + +++++ + + Sbjct: 18 FKPCRYKVMYGGRGGG-KSHGAASALLALGAQRP-LRILCAREIQKSMRDSVHRLLKDKV 75 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 + L H++E+ + + + S Sbjct: 76 AQLGLGHFYEITD--------------FEIRGANGTLFVFSGLQS---HTVDSIKSFEGI 118 Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRY 251 V+ +E G + + + + N Y F +P ED Sbjct: 119 DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITL--NPDMETDETYRRFIAMPSEDTWLC 176 Query: 252 QIDTRTVEGIDSGFHEGI-ISRYGLDSDVARIEILGQFPQQEVNNFIP---HNYIEEAMS 307 +I+ R + ++ ++ + G+ + Sbjct: 177 EINWRDNPWFPEALNRERLKAQRSMNKEDYGNIWEGRPRMVSEGAVYRHEIQDAFHSGRV 236 Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346 D P+ D+ +V R + I Sbjct: 237 TLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLTSVRIIG 275 >gi|59801465|ref|YP_208177.1| putative phage associated protein [Neisseria gonorrhoeae FA 1090] gi|260440843|ref|ZP_05794659.1| putative phage associated protein [Neisseria gonorrhoeae DGI2] gi|59718360|gb|AAW89765.1| hypothetical protein, putative phage associated protein [Neisseria gonorrhoeae FA 1090] Length = 424 Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 33/279 (11%), Positives = 75/279 (26%), Gaps = 26/279 (9%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 P +K G K+ A +L L + RP + I+C + +++++ + + Sbjct: 18 FKPCRYKVMYGGRGGG-KSHGAASALLALGAQRP-LRILCAREIQKSMRDSVHRLLKDKV 75 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 + L H++E+ + + + S Sbjct: 76 AQLGLGHFYEITD--------------FEIRGANGTLFVFSGLQS---HTVDSIKSFEGI 118 Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRY 251 V+ +E G + + + + N Y F +P ED Sbjct: 119 DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITL--NPDMETDETYRRFIAMPSEDTWLC 176 Query: 252 QIDTRTVEGIDSGFHEGI-ISRYGLDSDVARIEILGQFPQQEVNNFIP---HNYIEEAMS 307 +I+ R + ++ ++ + G+ + Sbjct: 177 EINWRDNPWFPEALNRERLKAQRSMNKEDYGNIWEGRPRMVSEGAVYRHEIQDAFHSGRV 236 Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346 D P+ D+ +V R + I Sbjct: 237 TLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLTSVRIIG 275 >gi|17570838|ref|NP_523347.1| DNA packaging protein B [Enterobacteria phage T3] gi|17384322|emb|CAC86310.1| DNA packaging protein B [Enterobacteria phage T3] Length = 586 Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 46/386 (11%), Positives = 98/386 (25%), Gaps = 86/386 (22%) Query: 19 LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78 L+ A+ F F+ F W P+ P + Q++ + + + Sbjct: 10 LVVAQLKGDFVAFL--FVLWKALNLPV-----PTKCQIDMAKVLANGDNK---------- 52 Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 K + A RGIGK+ + ++W + P + I+ ++ S+ + + + +LP Sbjct: 53 KFILQAFRGIGKSFITCAFVVWTLWRDPQLKILIVSASKERADANSIF-IKNIIDLLPFL 111 Query: 139 HWFEMQSLSLHPSGWYAE-LLEQSMGIDSKHYTITCRTY----------SEERPDTFVGP 187 + + + + K IT + E P Sbjct: 112 AELKPRPGQRDSVISFDVGPAKPDHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATQ 171 Query: 188 HNTHGMAVFNDEASGT-------------PDIINKSILGFFTE--LNPNRFWIMTSNTRR 232 + E + ++ + W R Sbjct: 172 GAREKLWTLVQEFAALLKPLPTSRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRSR 231 Query: 233 LNGWFY------DIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-- 284 +Y + + ++ Q D YG + + Sbjct: 232 EEDLYYGERLAPMLREEFNDGFEMLQGQPTDPVRFDMEDLRERELEYGKAGFTLQFMLNP 291 Query: 285 ---LGQ-FPQQEVNNFIPHNYIEEA----------MSREAIDD----------------- 313 + +P + + + E+A +R Sbjct: 292 NLSDAEKYPLRLRDAIVCGLDFEKAPMHYQWLPNRQNRNEELPNVGLKGDDIHSYHSCSQ 351 Query: 314 ---LYAPLIMGCDIAGEGGDKTVVVF 336 Y I+ D +G G D+T Sbjct: 352 NTGQYQQRILVIDPSGRGKDETGYAV 377 >gi|165928475|ref|ZP_02224307.1| P-loop protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165919510|gb|EDR36843.1| P-loop protein [Yersinia pestis biovar Orientalis str. F1991016] Length = 397 Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 35/272 (12%), Positives = 73/272 (26%), Gaps = 56/272 (20%) Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 + V +H +P FK + AGR GK+ L+ ++ + + +A + Sbjct: 7 LSLVQLHSGQMQVFQSPHRFKV-VCAGRRWGKSRLSISTIIRAAAKEKKQRVWYVAPTYQ 65 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 + LW ++ + L R + + + + Sbjct: 66 MARQILWDDLQEVLPRKWVRKKNDTTMT---------------IVLKNGSEIALKG---- 106 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 + PD K + + ++ + F+ Sbjct: 107 ----------------------ADKPDTWYKVLRPTLSS--TRGGALIIGTP-KGFSEFH 141 Query: 239 DIFNIPLE-------DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291 ++ I WK +Q T + S E + D E L F Sbjct: 142 KLWTIGQNKDLQRKGQWKSWQFVTADSPFVPSAEIEAAKNDM--DPKSFAQEYLASFENM 199 Query: 292 EVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323 + P + + + P+ +G D Sbjct: 200 SGRVYYPFD--RNVHVKPLQFNPKLPIWVGQD 229 >gi|189427245|ref|YP_001949795.1| gp19 [Salmonella phage phiSG-JL2] gi|189085898|gb|ACD75713.1| gp19 [Salmonella phage phiSG-JL2] Length = 587 Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 46/386 (11%), Positives = 96/386 (24%), Gaps = 86/386 (22%) Query: 19 LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78 L+ A+ F F+ F W P P + Q++ + + Sbjct: 11 LIIAQLKGDFVAFL--FVLWKALALP-----PPTKCQIDMARCLANGDNK---------- 53 Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 K + A RGIGK+ + ++W + P + I+ ++ S+ + + + +LP Sbjct: 54 KFILQAFRGIGKSFITCAFVVWTLWRDPQLKILIVSASKERADANSIF-IKNIIDLLPFL 112 Query: 139 HWFEMQSLSLHPSGWYAE-LLEQSMGIDSKHYTITCRTY----------SEERPDTFVGP 187 + + + + K IT + E P Sbjct: 113 AELKPRPGQRDSVISFDVGPAKPDHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATQ 172 Query: 188 HNTHGMAVFNDEASGT-------------PDIINKSILGFFTE--LNPNRFWIMTSNTRR 232 + E + ++ + W R Sbjct: 173 GAREKLWTLVQEFAALLKPLPTSRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRSR 232 Query: 233 LNGWFY------DIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-- 284 +Y + + ++ Q D YG + + Sbjct: 233 EEDLYYGDRLAPMLREEFNDGFEMLQGQPTDPVRFDMEDLRERELEYGKAGFTLQFMLNP 292 Query: 285 ---LGQ-FPQQEVNNFIPHNYIEEA----------MSREAIDD----------------- 313 + +P + + + E+A +R Sbjct: 293 NLSDAEKYPLRLRDAIVCGLDFEKAPMHYQWLPNRQNRNEELPNVGLKGDDIHSYHSCSQ 352 Query: 314 ---LYAPLIMGCDIAGEGGDKTVVVF 336 Y I+ D +G G D+T Sbjct: 353 NTGQYQQRILVIDPSGRGKDETGYAV 378 >gi|240112597|ref|ZP_04727087.1| putative phage associated protein [Neisseria gonorrhoeae MS11] gi|268598667|ref|ZP_06132834.1| phage terminase [Neisseria gonorrhoeae MS11] gi|268582798|gb|EEZ47474.1| phage terminase [Neisseria gonorrhoeae MS11] Length = 424 Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 33/279 (11%), Positives = 74/279 (26%), Gaps = 26/279 (9%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 P +K G K+ A +L L + RP + I+C + +++++ + + Sbjct: 18 FKPCRYKVMYGGRGGG-KSHGAASALLALGAQRP-LRILCAREIQKSMRDSVHRLLKDKV 75 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 + L H++E+ + + + S Sbjct: 76 AQLGLGHFYEITD--------------FEIRGANGTLFVFSGLQS---HTVDSIKSFEGI 118 Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRY 251 V+ +E G + + + + N Y F +P ED Sbjct: 119 DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITL--NPDMETDETYRRFIAMPSEDTWLC 176 Query: 252 QIDTRTVEGIDSGFHEGI-ISRYGLDSDVARIEILGQFPQQEVNNFIP---HNYIEEAMS 307 +I+ R + ++ + + G+ + Sbjct: 177 EINWRDNPWFPEALNRERLKAQRSMSKEDYGNIWEGRPRMVSEGAVYRHEIQDAFHSGRV 236 Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346 D P+ D+ +V R + I Sbjct: 237 TLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLTSVRIIG 275 >gi|170676278|ref|YP_001742039.1| large terminase subunit [Salmonella phage E1] gi|170321588|emb|CAM33107.1| phage large terminase subunit [Salmonella phage Vi II-E1] Length = 474 Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 31/271 (11%), Positives = 71/271 (26%), Gaps = 36/271 (13%) Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 P FK GRG K+ ++ R + C + +K + +AE+ ++ Sbjct: 76 PRRFKVFY-GGRGSAKSRSCISYLIEKARFR-NSRVGCFREIQNSIKESSYAELVDEINR 133 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 H + + ++ + + Sbjct: 134 KGHTQEYRCVDGEI-------------THHSTRSKFVFRGLWRNITAIKG----MAGLTD 176 Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL--------- 245 VF +E+ + +++ I+ N + + F P Sbjct: 177 VFCEESENISQVSWDTLIPTVRAAGSEI--IIVFNPNKETDPTWTNFVEPYINKMVDGIY 234 Query: 246 --EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303 +D ++ + + +D D G+F ++ + Sbjct: 235 QDDDIVVVNVNYVHNPWFTEELKQHMNQMKTVDYDRYLWVYEGKFNKRSDEQVFGGKWRI 294 Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334 + + + P G D G D T + Sbjct: 295 DNFEVKPEW--HGPY-FGMDF-GFSTDPTAM 321 >gi|53793591|ref|YP_112491.1| terminase large subunit [Flavobacterium phage 11b] gi|53748181|emb|CAH56642.1| terminase large subunit [Flavobacterium phage 11b] Length = 432 Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 41/277 (14%), Positives = 80/277 (28%), Gaps = 30/277 (10%) Query: 90 KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLH 149 K+ L ++ PG + + LK T + S+L + + Sbjct: 32 KSALGILWLIEQCQAYPGTRWLMGRSKLKALKETTLNTFFEQASILKITEQYNYNAQ--- 88 Query: 150 PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209 + ++ + Y+ F + F DE + + Sbjct: 89 ---------SGVIYWNNGSEILLKDLYAYPSDQNFDSLGSLEISGAFIDECNQITYKAWQ 139 Query: 210 S----ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL------EDWKRYQIDTRTVE 259 I + + T N + W Y F + D K Q Sbjct: 140 IVKSRIRYKLNQYGIEPKMLGTCNPAK--NWVYAQFYLKDKNGTLDNDKKFIQALPTDNP 197 Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFP-QQEVNNFIPHNYIEEAMSREAIDDLYAPL 318 + + + ++S D + + G + + I + I+ + I + + Sbjct: 198 HLPASYLTSLLSL---DENSKQRLYYGNWEYDNDPAKLIDYEKIQNCFTNTFIP--FGEM 252 Query: 319 IMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355 + DIA G DK V+ G + IF + I E Sbjct: 253 YISADIARFGSDKMVICVWSGFRVVEIFSMAKSSITE 289 >gi|9634048|ref|NP_052122.1| DNA packaging protein B [Yersinia phage phiYeO3-12] gi|6599039|emb|CAB63643.1| DNA packaging protein B [Yersinia phage phiYeO3-12] Length = 587 Score = 74.6 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 46/386 (11%), Positives = 96/386 (24%), Gaps = 86/386 (22%) Query: 19 LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78 L+ A+ F F+ F W P P + Q++ + + Sbjct: 11 LIIAQLKGDFVAFL--FVLWKALALP-----PPTKCQIDMARCLANGDNK---------- 53 Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 K + A RGIGK+ + ++W + P + I+ ++ S+ + + + +LP Sbjct: 54 KFILQAFRGIGKSFITCAFVVWTLWRDPQLKILIVSASKERADANSIF-IKNIIDLLPFL 112 Query: 139 HWFEMQSLSLHPSGWYAE-LLEQSMGIDSKHYTITCRTY----------SEERPDTFVGP 187 + + + + K IT + E P Sbjct: 113 AELKPRPGQRDSVISFDVGPAKPDHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATQ 172 Query: 188 HNTHGMAVFNDEASGT-------------PDIINKSILGFFTE--LNPNRFWIMTSNTRR 232 + E + ++ + W R Sbjct: 173 GAREKLWTLVQEFAALLKPLPTSRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRSR 232 Query: 233 LNGWFY------DIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-- 284 +Y + + ++ Q D YG + + Sbjct: 233 EEDLYYGDRLAPMLREEFNDGFEMLQGQPTDPVRFDMEDLRERELEYGKAGFTLQFMLNP 292 Query: 285 ---LGQ-FPQQEVNNFIPHNYIEEA----------MSREAIDD----------------- 313 + +P + + + E+A +R Sbjct: 293 NLSDAEKYPLRLRDAIVCGLDFEKAPMHYQWLPNRQNRNEELPNVGLKGDDIHSYHSCSQ 352 Query: 314 ---LYAPLIMGCDIAGEGGDKTVVVF 336 Y I+ D +G G D+T Sbjct: 353 NTGQYQQRILVIDPSGRGKDETGYAV 378 >gi|320179507|gb|EFW54461.1| Phage terminase, large subunit [Shigella boydii ATCC 9905] Length = 539 Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 45/365 (12%), Positives = 94/365 (25%), Gaps = 40/365 (10%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIK--------GKPLEHF 48 P + + L + + E + K F WG+ G P+ Sbjct: 12 PDYQMVFEWRMERLQRIRQNPEILPVLKQFYRTNPAQFIIDWGMTTDPRNIDYGLPVTIP 71 Query: 49 SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108 Q E++ + + N R +G + + L M Sbjct: 72 FLLFPKQEEWIHWIMERWSNRENGITEKS--------REMGLSWTAIGLACSLCLFNKEM 123 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 I + E + ++ + + ++ +A + Sbjct: 124 VIGFGSRKEEYV-DSTGDPKALFWKARKFVETLPVEFRGSWSEKKHAPYMRVEFP----- 177 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 + F DEA+ + T I S Sbjct: 178 ----ETGAVIKGEAGDNIGRGDRTTLYFVDEAAFLQRPLLIDAALSQTTRCR----IDLS 229 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 + +N F + + R+ D ++ + + + E+ + Sbjct: 230 SVNGMNNPFAQKRH--SGKIPVFTFHWRSDPRKDDEWYHKECDKI-DNPVIVAQELDLNY 286 Query: 289 PQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346 IP +++ A+ + D+A EG DK R G ++ + Sbjct: 287 QASAEGILIPSEWVQAAVDAHIRLGIQPGGQRLGAMDVADEGRDKNACSLRYGILLNDVQ 346 Query: 347 DWSAK 351 +WS K Sbjct: 347 EWSGK 351 >gi|261881105|ref|ZP_06007532.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270332111|gb|EFA42897.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 423 Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 34/295 (11%), Positives = 74/295 (25%), Gaps = 42/295 (14%) Query: 62 VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM--LWLISTRPGM---SIICIANS 116 + H SN F I+ GR GK+ + + L T I+ + Sbjct: 2 IKTHKVYYPIYSNKDKFIILITGGRASGKSHFVSSFLERLTFEMTPIDKIVHQILYTRYT 61 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 ++ E + + + +F + + ++ + + T Sbjct: 62 MVSANISIIPEFLEKAELDGTQKYFRSTRSDVTNRMTGSTVMFRGLK-----------TS 110 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 S + H DEA + ++I+ + I+ N N Sbjct: 111 SGNQTAKLKSIHG--ITTFVVDEAEEWVSEKEFETIMLSIRQKGIQNRIIIVMNPTDNNH 168 Query: 236 WFYDIFNIPLEDWK----------------RYQIDTRTV-EGIDSGFHEGIISRYGLDSD 278 W Y F E + F + + + Sbjct: 169 WVYKRFIENTHKEVMYDGVPVQISTHPNVLHIHTTYLDNLENLSQEFINEVEDMKANNPE 228 Query: 279 VARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTV 333 ++G++ H + + + + +G D D + Sbjct: 229 KYAHTVMGRWADVAEGAVFKHIGVVKEFPKWCK-----KVAIGLDFGYT-NDVSA 277 >gi|30387500|ref|NP_848309.1| DNA maturase B [Yersinia pestis phage phiA1122] gi|30314137|gb|AAP20545.1| DNA maturase B [Yersinia pestis phage phiA1122] Length = 586 Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 47/386 (12%), Positives = 100/386 (25%), Gaps = 86/386 (22%) Query: 19 LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78 L+ A+ F F+ F W P+ P + Q++ + + + Sbjct: 10 LVVAQLKGDFVAFL--FVLWKALNLPV-----PTKCQIDMAKVLANGDNK---------- 52 Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 K + A RGIGK+ + ++W + P + I+ ++ S+ + + + +LP Sbjct: 53 KFILQAFRGIGKSFITCAFVVWSLWRDPQLKILIVSASKERADANSIF-IKNIIDLLPFL 111 Query: 139 HWFEMQSLSLHPSGWYAE-LLEQSMGIDSKHYTITCRTY----------SEERPDTFVGP 187 + + + + K IT + E P Sbjct: 112 AELKPRPGQRDSVISFDVGPAKPDHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATM 171 Query: 188 HNTHGMAVFNDEASGT-------------PDIINKSILGFFTE--LNPNRFWIMTSNTRR 232 + E + ++ + W R Sbjct: 172 GAREKLWTLVQEFAALLKPLTSSRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRTR 231 Query: 233 LNGWFYDIFNIP------LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-- 284 +Y P E+ + D YG + + Sbjct: 232 EENLYYSQRLAPMLRAEYDENPEALAGTPTDPVRFDRDDLRERELEYGKAGFTLQFMLNP 291 Query: 285 ---LGQ-FPQQEVNNFIPHNYIEEA-MSREAIDD-------------------------- 313 + +P + + + +E+A M + + + Sbjct: 292 NLSDAEKYPLRLRDAIVAALDLEKAPMHYQWLPNRQNIIEDLPNVGLKGDDLHTYHDCSN 351 Query: 314 ---LYAPLIMGCDIAGEGGDKTVVVF 336 Y I+ D +G G D+T Sbjct: 352 NSGQYQQKILVIDPSGRGKDETGYAV 377 >gi|219499179|ref|YP_002455350.1| putative phage terminase, pbsx family protein [Borrelia burgdorferi ZS7] gi|218164189|gb|ACK74256.1| putative phage terminase, pbsx family protein [Borrelia burgdorferi ZS7] Length = 450 Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 43/288 (14%), Positives = 85/288 (29%), Gaps = 43/288 (14%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMS 109 Q E + ++ + K S G GKT L +++++ + + Sbjct: 49 QKEVLFDIESN----------NYSKVIFSGGIASGKTFLASYLLVKKLIENKSFYEQDTN 98 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I NS L ++ K S+L + + +S +L Sbjct: 99 NFIIGNSIGLLMTNTVKQIEKICSLLGI-DYEKKKSGQSFCKIAGLKLN----------- 146 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 Y + D F + ++ +EA+ ++ + I +N Sbjct: 147 -----IYGGKNRDAFSKIRGGNSAIIYVNEATVIHRETLLEVIKRLRKG--KEIIIFDTN 199 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 +F + + +K Y T + F + Y + G++ Sbjct: 200 PESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIQAQEKLYRRFPAYRARVLYGEWI 259 Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336 E F E +++ + IM D A GGD T + Sbjct: 260 LNESTLFN-----EMIFNQDYE---FKSPIMYIDPAFSVGGDNTAICV 299 >gi|317487266|ref|ZP_07946061.1| hypothetical protein HMPREF0179_03424 [Bilophila wadsworthia 3_1_6] gi|316921456|gb|EFV42747.1| hypothetical protein HMPREF0179_03424 [Bilophila wadsworthia 3_1_6] Length = 601 Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 42/379 (11%), Positives = 90/379 (23%), Gaps = 82/379 (21%) Query: 22 AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81 E + F+ F+ W P P QL+ + ++ + Sbjct: 2 PEKLTDFRVFLTLV--WRHLNLP-----DPTPIQLD----IALYLQHGP-------RRKI 43 Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 I A RG+GK+ + A ++W + P + + ++ S+ + N + + + Sbjct: 44 IEAFRGVGKSWITAAYVVWRLRQNPNLKFMVLSASKDRADNFTTFCLRLINEIPILQCLI 103 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE----------ERPDTFVGPHNTH 191 + I + E P+ Sbjct: 104 PRADQRCSKLSFDVGPARADHAPSVTSKGIFSQITGGRADEIISDDVEVPNNSFTQAMRD 163 Query: 192 GMAVFNDEASGT-----------PDIINKSILGFFTELN-PNRFWIMTS-NTRRLNGWFY 238 ++ E +S+ + R W + +L + Sbjct: 164 KLSEAVKEFDAILKPGGTITYLGTPQTEQSLYNQLPDRGYAIRIWPARYPSEDQLINYGN 223 Query: 239 DIFNIPLEDW----KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ------F 288 + + W T YG + + + + Sbjct: 224 ERLAPFILRWLEGEPTLVGRTTDPRRFSDDDLLERELSYGRSGFQLQFMLDTRLSDMEKY 283 Query: 289 PQQEVNNFI----PHNYIEEAMS---------------------------REAIDDLYAP 317 P + + + + E+ + Y Sbjct: 284 PLKLGDLIVMSCSATDAPEKPIWAAGTTNILNDVPCVGLNGDSRYYGPAFLHGTWLPYTG 343 Query: 318 LIMGCDIAGEGGDKTVVVF 336 +M D AG G D+T V Sbjct: 344 SVMAIDPAGRGKDETAVCV 362 >gi|240127880|ref|ZP_04740541.1| putative phage associated protein [Neisseria gonorrhoeae SK-93-1035] Length = 424 Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 33/279 (11%), Positives = 75/279 (26%), Gaps = 26/279 (9%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 P +K G K+ A +L L + RP + I+C + +++++ + + Sbjct: 18 FKPCRYKVMYGGRGGG-KSHGAASALLALGAQRP-LRILCAREIQKSMRDSVHRLLKDKV 75 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 + L H++E+ + + + S Sbjct: 76 AQLGLAHFYEITD--------------FEIRGANGTLFVFSGLQS---HTVDSIKSFEGI 118 Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRY 251 V+ +E G + + + + N Y F +P ED Sbjct: 119 DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITL--NPDMETDETYRRFIAMPSEDTWLC 176 Query: 252 QIDTRTVEGIDSGFHEGI-ISRYGLDSDVARIEILGQFPQQEVNNFIP---HNYIEEAMS 307 +I+ R + ++ ++ + G+ + Sbjct: 177 EINWRDNPWFPEALNRERLKAQRSMNKEDYGNIWEGRPRMVSEGAVYRHEIQDAFHSGRV 236 Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346 D P+ D+ +V R + I Sbjct: 237 TLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLTSVRIIG 275 >gi|126728773|ref|ZP_01744588.1| terminase, large subunit, putative [Sagittula stellata E-37] gi|126710703|gb|EBA09754.1| terminase, large subunit, putative [Sagittula stellata E-37] Length = 432 Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 68/291 (23%), Gaps = 36/291 (12%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAI-SAGRGIGKTTLNAWMMLWLISTRPG------MSI 110 + + ++ + GRG GKT A + + + Sbjct: 16 ALPYLFDFWAHPHQLPPEGDWRTWVILGGRGAGKTRAGAEWVRAQVEGARPMKPGRCKRM 75 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 I + Q + + S L+ P Q+ Sbjct: 76 AIIGETFDQAREVMVFGDSGILACSPPDRRPLWQASRKCL------------------VW 117 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTS 228 + DE + + + + + Sbjct: 118 PNGAEAMIYSASEPEALRGPQFDGAWVDELAKWKRGQDTWDMLQFGLRLGDHPQVCVT-- 175 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 T R G + + F + + SRY +S + E+ G Sbjct: 176 TTPRNVG-VLKALLALESTVTTHAPTEVNAAHLARSFLDEVRSRYA-NSSLGMQELDGLL 233 Query: 289 PQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD-IAGEG--GDKTVVVF 336 + + ++ R + +++ D AG+G D +V Sbjct: 234 LDEVDGAMWTRDLLDA--QRCGMLPALDRIVVAVDPPAGDGKRSDACGIVV 282 >gi|332560992|ref|ZP_08415310.1| hypothetical protein RSWS8N_18139 [Rhodobacter sphaeroides WS8N] gi|332274790|gb|EGJ20106.1| hypothetical protein RSWS8N_18139 [Rhodobacter sphaeroides WS8N] Length = 468 Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 35/282 (12%), Positives = 73/282 (25%), Gaps = 32/282 (11%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLIST--RPGMSI--ICIANSETQLKNTLWAEVS 129 + + FK + + R GKT + T + + ++ E Q + + Sbjct: 23 DDSRFKIGMFS-RQTGKTFSTCGECVDACFTAWKDDRRTRWVILSRGERQAAEAMTEVIK 81 Query: 130 -------KWLSMLPHRHWFEMQSLSLH---PSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 + + L + G A + + Sbjct: 82 PFTRAFYEVYNTLVKGGEPRFEEGEFRAPQEKGPDAVYKALEVAFPNGSRITA------- 134 Query: 180 RPDTFVGPHNTHGMAVFNDEASG--TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 P V DE + I ++ ++ + S F Sbjct: 135 LPANPDTARGFSAN-VILDEFAFHAKSREIWAALFPVISKGGQKLR--VISTPNGKGNKF 191 Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297 Y++ W R+ +D ++ D D E ++ + N ++ Sbjct: 192 YELMTAEGSVWSRHVVDIHEAVRQGLDRDIDMLRAGMADEDAWAQEYELKWLDEA-NAWL 250 Query: 298 PHNYIEEAMS---REAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 ++ I + P +G DIA D V+ Sbjct: 251 DYDLISACEHPAAGMPGLYMGGPCFVGVDIAAR-NDLFVIWV 291 >gi|194100409|ref|YP_002003984.1| gp19 [Enterobacteria phage 13a] gi|193201456|gb|ACF15933.1| gp19 [Enterobacteria phage 13a] Length = 586 Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 47/386 (12%), Positives = 100/386 (25%), Gaps = 86/386 (22%) Query: 19 LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78 L+ A+ F F+ F W P+ P + Q++ + + + Sbjct: 10 LVVAQLKGDFVAFL--FVLWKALNLPV-----PTKCQIDMAKVLANGDNK---------- 52 Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 K + A RGIGK+ + ++W + P + I+ ++ S+ + + + +LP Sbjct: 53 KFILQAFRGIGKSFITCAFVVWSLWRDPQLKILIVSASKERADANSIF-IKNIIDLLPFL 111 Query: 139 HWFEMQSLSLHPSGWYAE-LLEQSMGIDSKHYTITCRTY----------SEERPDTFVGP 187 + + + + K IT + E P Sbjct: 112 SELKPRPGQRDSVISFDVGPAKPDHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATM 171 Query: 188 HNTHGMAVFNDEASGT-------------PDIINKSILGFFTE--LNPNRFWIMTSNTRR 232 + E + ++ + W R Sbjct: 172 GAREKLWTLVQEFAALLKPLPSSRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRTR 231 Query: 233 LNGWFYDIFNIP------LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-- 284 +Y P E+ + D YG + + Sbjct: 232 EENLYYSQRLAPMLRAEYDENPEALAGTPTDPVRFDRDDLRERELEYGKAGFTLQFMLNP 291 Query: 285 ---LGQ-FPQQEVNNFIPHNYIEEA-MSREAIDD-------------------------- 313 + +P + + + +E+A M + + + Sbjct: 292 NLSDAEKYPLRLRDAIVAALDLEKAPMHYQWLPNRQNIIEDLPNVGLKGDDLHTYHDCSN 351 Query: 314 ---LYAPLIMGCDIAGEGGDKTVVVF 336 Y I+ D +G G D+T Sbjct: 352 NSGQYQQKILVIDPSGRGKDETGYAV 377 >gi|313892516|ref|ZP_07826105.1| DNA maturase B [Dialister microaerophilus UPII 345-E] gi|313119095|gb|EFR42298.1| DNA maturase B [Dialister microaerophilus UPII 345-E] Length = 567 Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 44/395 (11%), Positives = 95/395 (24%), Gaps = 87/395 (22%) Query: 8 DQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCH 67 EQ++ + F+ FV W G P +P Q + E + + Sbjct: 1 MYWTEQQI------TKAKEDFRIFVFIV--WRSIGLP-----EPTEIQYDIAETLMNTPN 47 Query: 68 SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127 + I RG+ K+ L ++W + P + ++ ++ S+ + Sbjct: 48 D----------RFIIEGFRGVAKSFLTCAYVVWKLWKDPQLKVLVVSASKDRADANAIFI 97 Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY----------S 177 L + + + + L + K IT + Sbjct: 98 KRIILLIDFLDILRPQKGQRDTQNLFDVGLAIPDISPSVKSVGITGQITGSRADLLIADD 157 Query: 178 EERPDTFVGPHNTHGMAVFNDEASGT------------PDIINKSILGFFTELNPNRFWI 225 E P+ + E P R W Sbjct: 158 VEIPNNSSTQTQRMQLQERVKEFDAVLKPKGQIIYLGTPQNEMSLYNELTKRGYKKRIWT 217 Query: 226 MT--SNTRRLNGWFYDIFNIPLEDWKR----YQIDTRTVEGIDSGFHEGIISRYGLDSDV 279 + S + + ++ + E + Y ++ YG Sbjct: 218 VQYPSTKKERENYGDELAPLIAERYDNAPQAYAGQPTDPTRFNTEEIAKRKLSYGKAGFA 277 Query: 280 ARIEILGQ------FPQQEVNNFIP------------------------------HNYIE 303 + + +P + + + +Y Sbjct: 278 LQFMLNTNLSDAEKYPLKIKDLIVTDIDNTKGSLKYSWCSERSHRLIDIPCVALKGDYFY 337 Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338 + + Y +M D +G G D+T + Sbjct: 338 SPLGMAEETEEYTGCVMAIDPSGRGKDETAYAIIK 372 >gi|226246423|ref|YP_002775825.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi 29805] gi|226201818|gb|ACO38403.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi 29805] Length = 450 Score = 73.8 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 43/288 (14%), Positives = 85/288 (29%), Gaps = 43/288 (14%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMS 109 Q E + ++ + K S G GKT L +++++ + + Sbjct: 49 QKEVLFDIESN----------NYSKVIFSGGIASGKTFLASYLLVKKLIENKSFYEQDTN 98 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I NS L ++ K S+L + + +S +L Sbjct: 99 NFIIGNSIGLLMTNTVKQIEKICSLLGI-DYEKKKSGQSFCKIAGLKLN----------- 146 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 Y + D F + ++ +EA+ ++ + I +N Sbjct: 147 -----IYGGKNRDAFSKIRGGNSAIIYVNEATVIHRETLLEVIKRLRKG--KEIIIFDTN 199 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 +F + + +K Y T + F + Y + G++ Sbjct: 200 PESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSTDFIQTQEKLYRRFPAYRARVLYGEWI 259 Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336 E F E +++ + IM D A GGD T + Sbjct: 260 LNESTLFN-----EMIFNQDYE---FKSPIMYIDPAFSVGGDNTAICV 299 >gi|317483571|ref|ZP_07942553.1| phage terminase [Bifidobacterium sp. 12_1_47BFAA] gi|316914997|gb|EFV36437.1| phage terminase [Bifidobacterium sp. 12_1_47BFAA] Length = 487 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 33/281 (11%), Positives = 71/281 (25%), Gaps = 39/281 (13%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 RWQ + + ++ +S R GKT + +++ L + P +++I Sbjct: 42 DRWQQGLLTLI--LGRRADGTFAASVGGVVLSICRQTGKTFTVSSLVVILCTLIPNLTVI 99 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A+ N + V + + + + G Q + + + Sbjct: 100 WTAHHNRTNSN-TFDHVRTLVRNPALIGYLDHSGRTDGVRGGNG---MQEITFANGSKIL 155 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 + DEA + ++ T +PN + Sbjct: 156 FGARAQGFARGN------DAVDIIVFDEAQILTEQAISDMVPA-TNTSPNALVLYIGTPP 208 Query: 232 RLNGWFYDIFNIPLE-----------------------DWKRYQIDTRTVEGIDSGFHEG 268 R + + + + Sbjct: 209 RPADPGEAFTERRRQALAGEDDMLYVEFSADRDADSDDRAQWRKANPSFPRRTSETSMLR 268 Query: 269 IISRYGLDSDVARIEILGQFPQQEVN-NFIPHNYIEEAMSR 308 + + G DS R E LG + + N P + + A Sbjct: 269 MQRQLGKDS--FRREALGIWDETATNRAINPEQWTKAATGT 307 >gi|268686275|ref|ZP_06153137.1| phage terminase [Neisseria gonorrhoeae SK-93-1035] gi|268626559|gb|EEZ58959.1| phage terminase [Neisseria gonorrhoeae SK-93-1035] Length = 417 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 33/279 (11%), Positives = 75/279 (26%), Gaps = 26/279 (9%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 P +K G K+ A +L L + RP + I+C + +++++ + + Sbjct: 11 FKPCRYKVMYGGRGGG-KSHGAASALLALGAQRP-LRILCAREIQKSMRDSVHRLLKDKV 68 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 + L H++E+ + + + S Sbjct: 69 AQLGLAHFYEITD--------------FEIRGANGTLFVFSGLQS---HTVDSIKSFEGI 111 Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRY 251 V+ +E G + + + + N Y F +P ED Sbjct: 112 DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITL--NPDMETDETYRRFIAMPSEDTWLC 169 Query: 252 QIDTRTVEGIDSGFHEGI-ISRYGLDSDVARIEILGQFPQQEVNNFIP---HNYIEEAMS 307 +I+ R + ++ ++ + G+ + Sbjct: 170 EINWRDNPWFPEALNRERLKAQRSMNKEDYGNIWEGRPRMVSEGAVYRHEIQDAFHSGRV 229 Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346 D P+ D+ +V R + I Sbjct: 230 TLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLTSVRIIG 268 >gi|203288609|ref|YP_002223516.1| bsr protein [Borrelia duttonii Ly] gi|201084316|gb|ACH93904.1| bsr protein [Borrelia duttonii Ly] Length = 450 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 42/290 (14%), Positives = 85/290 (29%), Gaps = 43/290 (14%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST-----RPGMS 109 Q E + + N K + G GKT L +++++ L+ + Sbjct: 49 QKEVLRDI----------DNNFCSKIIFNGGISSGKTFLASYLLIKLLIINRDHYHKDTN 98 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 + +S L ++ K S+L + + S + Sbjct: 99 NFIVGSSIGTLLANTLKQIEKICSLLNIEYLL-----------------KDSRQVTCTIA 141 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 +T Y + D+F ++ V+ +EA+ I+ + I +N Sbjct: 142 GLTLNIYGGKNIDSFTKIRGSNSALVYVNEATLMHKETLLEIMKRLRQ--KPGIIIFDTN 199 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 +F + + ++ Y + F + + Y S +LG++ Sbjct: 200 PDHPAHYFKVDYIDNRDVYRTYNFNIYDNPLNSKDFIKTQEAIYKNLSAYKARVLLGEWT 259 Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVFRR 338 + F + I IM D A G D T + Sbjct: 260 ASIDSCF--NEVILNCEYTFKSP------IMYIDPAFSVGMDNTAICVFE 301 >gi|209885731|ref|YP_002289588.1| phage DNA Packaging Protein [Oligotropha carboxidovorans OM5] gi|209873927|gb|ACI93723.1| phage DNA Packaging Protein [Oligotropha carboxidovorans OM5] Length = 434 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 34/262 (12%), Positives = 70/262 (26%), Gaps = 35/262 (13%) Query: 84 AGRGIGKTTLNAWMM------LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 GRG GKT A + L ++ +P I + +E ++ + VS L++ Sbjct: 52 GGRGAGKTRAGAEWIRAQALGLAPLAQQPAGRIALVGETEHDVREVMIEGVSGLLAVHRR 111 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 Q + + Sbjct: 112 DERPMWQPSRRRLE------------------WKNGAVAHAFSAEDPESLRGPQFACAWA 153 Query: 198 DEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255 DE + + + R + + T R + N Sbjct: 154 DELAKWRYAEAAFDMLQFGLRLGAQPRQ--LITTTPRPTALIKRLLN-DESCVTTRAATR 210 Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY 315 + F + +++RY + R E+ G+ ++ + IE EA Sbjct: 211 SNALHLAPTFLQSVMARYAGT-RLGRQELDGELIEERPDALWSRGLIETCRISEAPPLQ- 268 Query: 316 APLIMGCDI---AGEGGDKTVV 334 +++ D +G+ D + Sbjct: 269 -RIVVAVDPPATSGKRADACGI 289 >gi|247553170|gb|ACS94899.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi 297] Length = 450 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 43/288 (14%), Positives = 85/288 (29%), Gaps = 43/288 (14%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMS 109 Q E + ++ + K S G GKT L +++++ + + Sbjct: 49 QKEVLFDIESN----------NYSKVIFSGGIASGKTFLASYLLVKKLIENKSFYEQDTN 98 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I NS L ++ K S+L + + +S +L Sbjct: 99 NFIIGNSIGLLMTNTVKQIEKICSLLGI-DYEKKKSGQSFCKIAGLKLN----------- 146 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 Y + D F + ++ +EA+ ++ + I +N Sbjct: 147 -----IYGGKNRDAFSKIRGGNSAIIYVNEATVIHRETLLEVIKRLRKG--KEIIIFDTN 199 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 +F + + +K Y T + F + Y + G++ Sbjct: 200 PESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIQTQEKLYRRFPAYRARVLYGEWI 259 Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336 E F E +++ + IM D A GGD T + Sbjct: 260 LNESTLFN-----EMIFNQDYE---FKSPIMYIDPAFSVGGDNTAICV 299 >gi|11496928|ref|NP_045704.1| hypothetical protein BBA31 [Borrelia burgdorferi B31] gi|195942693|ref|ZP_03088075.1| hypothetical protein Bbur8_07694 [Borrelia burgdorferi 80a] gi|224796822|ref|YP_002642504.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi 72a] gi|224796893|ref|YP_002642572.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi CA-11.2a] gi|225573840|ref|YP_002724449.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi 94a] gi|226234883|ref|YP_002775758.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi Bol26] gi|2690260|gb|AAC66261.1| conserved hypothetical protein [Borrelia burgdorferi B31] gi|221237191|gb|ACM10059.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi 72a] gi|224554443|gb|ACN55827.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi CA-11.2a] gi|225546432|gb|ACN92439.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi 94a] gi|226202357|gb|ACO38016.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi Bol26] gi|247552767|gb|ACS94776.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi N40] Length = 450 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 43/288 (14%), Positives = 85/288 (29%), Gaps = 43/288 (14%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMS 109 Q E + ++ + K S G GKT L +++++ + + Sbjct: 49 QKEVLFDIESN----------NYSKVIFSGGIASGKTFLASYLLVKKLIENKSFYEQDTN 98 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I NS L ++ K S+L + + +S +L Sbjct: 99 NFIIGNSIGLLMTNTVKQIEKICSLLGI-DYEKKKSGQSFCKIAGLKLN----------- 146 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 Y + D F + ++ +EA+ ++ + I +N Sbjct: 147 -----IYGGKNRDAFSKIRGGNSAIIYVNEATVIHRETLLEVIKRLRKG--KEIIIFDTN 199 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 +F + + +K Y T + F + Y + G++ Sbjct: 200 PESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIQTQEKLYRRFPAYRARVLYGEWI 259 Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336 E F E +++ + IM D A GGD T + Sbjct: 260 LNESTLFN-----EMIFNQDYE---FKSPIMYIDPAFSVGGDNTAICV 299 >gi|254560550|ref|YP_003067645.1| hypothetical protein METDI2093 [Methylobacterium extorquens DM4] gi|254267828|emb|CAX23679.1| conserved hypothetical protein [Methylobacterium extorquens DM4] Length = 421 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 42/290 (14%), Positives = 80/290 (27%), Gaps = 35/290 (12%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTR------PGMS 109 +EA +H + P + A+ GRG GKT A + L P Sbjct: 10 RLLEADWLHLARHDQLPPPGNWTTWAVIGGRGSGKTRTGAEWVRGLAYGDPVFSPEPVER 69 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I + + +++ + S L++ G + + S + Sbjct: 70 IALVGETFADVRDVMIEGPSGLLALPRL--------------GGAPPVWQPSRR---RVV 112 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMT 227 + AV++DE + + I R + Sbjct: 113 FGNGAVALAFSAEEPDSLRGPQFGAVWSDEVAKWREAEATYDMIQFGLRLGTHPRGLVT- 171 Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287 T R + P + + F E ++ RY + R E+ G+ Sbjct: 172 -TTPRPVPLIRRLLADPRT-VVTRSRTADNAQNLAPSFLEEVVGRYAGT-RLGRQELDGE 228 Query: 288 FPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVV 334 + + + IE A E + + D + G D + Sbjct: 229 LIEDRPDALWTRDSIERARVSEVPPLQ--RIAVAIDPPASSRVGADACGI 276 >gi|119637788|ref|YP_919024.1| DNA packaging protein B [Yersinia phage Berlin] gi|119391819|emb|CAJ70692.1| hypothetical protein [Yersinia phage Berlin] gi|312436388|gb|ADQ83197.1| DNA maturase B [Yersinia phage Yep-phi] Length = 585 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 45/387 (11%), Positives = 99/387 (25%), Gaps = 88/387 (22%) Query: 19 LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78 L+ A+ F F+ F W P +P + Q++ + H Sbjct: 10 LIVAQLKGDFVAFL--FVLWKALNLP-----KPTKCQIDMARTLADGDHK---------- 52 Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 K + A RGIGK+ + ++W++ P + ++ ++ S+ + + + +LP Sbjct: 53 KFILQAFRGIGKSFITCAFVVWVLWRDPQLKVLIVSASKERADANSIF-IKNIIDLLPFL 111 Query: 139 HWFEMQSLSLHPSGWYAELL-EQSMGIDSKHYTITCRTY----------SEERPDTFVGP 187 + + + L + K IT + E P Sbjct: 112 AELKPRPGQRDSVISFDVGLAKPDHSPSVKSVGITGQLTGSRADIIIADDVEVPGNSSTS 171 Query: 188 HNTHGMAVFNDEASGT-------------PDIINKSILGFFTE--LNPNRFWIMTSNTRR 232 + E + ++ + W R Sbjct: 172 SAREKLWTLVTEFAALLKPLPTSRVIYLGTPQTEMTLYKELEDNKGYSTVIWPAQY-PRN 230 Query: 233 LNGWFYDIFNIP-------LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI- 284 Y + E ++ + D+ YG + + Sbjct: 231 DAEALYYGDRLAPMLKAEYDEGFELLRGQPTDPVRFDTDDLRERELEYGKAGYTLQFMLN 290 Query: 285 ----LGQ-FPQQEVNNFI----------PHNYIEEAMSREAIDD---------------- 313 + +P + + + + ++ +R Sbjct: 291 PNLSDAEKYPLRLRDAIVCAVDPERAPLSYQWLPNRQNRNEELPNVGLKGDDIHSFHTCS 350 Query: 314 ----LYAPLIMGCDIAGEGGDKTVVVF 336 Y I+ D +G G D+T Sbjct: 351 SRTAEYQSKILVIDPSGRGKDETGYAV 377 >gi|94263678|ref|ZP_01287487.1| hypothetical protein MldDRAFT_1386 [delta proteobacterium MLMS-1] gi|93455983|gb|EAT06138.1| hypothetical protein MldDRAFT_1386 [delta proteobacterium MLMS-1] Length = 457 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 43/321 (13%), Positives = 84/321 (26%), Gaps = 47/321 (14%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + + + + AGR GKT A + ++L + I + L Sbjct: 41 ELFTRLAGGRSAPTERVRELWAIAGRRSGKTNATAGIAVYLAT---------IGAAVDGL 91 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLH--PSGWYAELLEQSMGIDSKHYTITCRTYSE 178 + L +++L +L L + + D++ + R E Sbjct: 92 LDKLAPGERGVVALLAVDRQQAKVALRYIAGMFEASPVLAQMVVKRDAEALHLDNRISIE 151 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPD--------IINKSILGFFTELNPNRFWIMTSNT 230 + + +A DE + D ++IL + S+ Sbjct: 152 VSTNNYRSVRGRTLLAAVLDEVAFFRDDQSANPDVETYRAILPGLATTGG--LLVGISSP 209 Query: 231 RRLNGWFYDIFNI---PLEDWKRYQIDTRT-VEGIDSGFHEGIISRYGLDSDVARIEILG 286 G Y + D Q T I + + + G Sbjct: 210 YAKRGLLYQKWRKHYGQDGDILVIQGATPDFNPTIPTSVITDAEADDPAAARAEWF---G 266 Query: 287 QFPQQEVNNFIPHNYIEEAMSREAIDDLYAP---LIMGCDIAGEGGDKTVVVF------- 336 F F+ +E + Y D AG G D+ + Sbjct: 267 LFRDDVEG-FLTREVVEACTRPSPLVIPYNRENIYTAFADPAGGGRDEFCLAIGHQEGEV 325 Query: 337 --------RRGNIIEHIFDWS 349 RRG + + +++ Sbjct: 326 VVVDNLQARRGAPAKIVAEYA 346 >gi|247553003|gb|ACS94840.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi JD1] Length = 450 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 43/288 (14%), Positives = 85/288 (29%), Gaps = 43/288 (14%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMS 109 Q E + ++ + K S G GKT L +++++ + + Sbjct: 49 QKEVLFDIESN----------NYSKVIFSGGIASGKTFLASYLLVKKLIENKSFYEQDTN 98 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I NS L ++ K S+L + + +S +L Sbjct: 99 NFIIGNSIGLLMTNTVKQIEKICSLLGI-DYEKKKSGQSFCKIAGLKLN----------- 146 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 Y + D F + ++ +EA+ ++ + I +N Sbjct: 147 -----IYGGKNRDAFSKIRGGNSAIIYVNEATVIHKETLLEVIKRLRKG--KEIIIFDTN 199 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 +F + + +K Y T + F + Y + G++ Sbjct: 200 PESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIQTQEKLYRRFPAYRARVLYGEWI 259 Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336 E F E +++ + IM D A GGD T + Sbjct: 260 LNESTLFN-----EMIFNQDYE---FKSPIMYIDPAFSVGGDNTAICV 299 >gi|219807285|ref|YP_002477581.1| phage terminase, pbsx family protein [Borrelia burgdorferi 156a] gi|224797061|ref|YP_002642778.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi 64b] gi|225571759|ref|YP_002724342.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi 118a] gi|219692550|gb|ACL33771.1| phage terminase, pbsx family protein [Borrelia burgdorferi 156a] gi|223929616|gb|ACN24327.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi 64b] gi|225547179|gb|ACN93166.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi 118a] Length = 450 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 43/288 (14%), Positives = 85/288 (29%), Gaps = 43/288 (14%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMS 109 Q E + ++ + K S G GKT L +++++ + + Sbjct: 49 QKEVLFDIESN----------NYSKVIFSGGIASGKTFLASYLLVKKLIENKSFYEQDTN 98 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I NS L ++ K S+L + + +S +L Sbjct: 99 NFIIGNSIGLLMTNTVKQIEKICSLLGI-DYEKKKSGQSFCKIAGLKLN----------- 146 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 Y + D F + ++ +EA+ ++ + I +N Sbjct: 147 -----IYGGKNRDAFSKIRGGNSAIIYVNEATVIHKETLLEVIKRLRKG--KEIIIFDTN 199 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 +F + + +K Y T + F + Y + G++ Sbjct: 200 PESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIQTQEKLYRRFPAYRARVLYGEWI 259 Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336 E F E +++ + IM D A GGD T + Sbjct: 260 LNESTLFN-----EMIFNQDYE---FKSPIMYIDPAFSVGGDNTAICV 299 >gi|137614|sp|P10310|VDMB_BPT3 RecName: Full=DNA maturase B; AltName: Full=DNA-packaging protein B; AltName: Full=GP19 gi|215814|gb|AAA92528.1| DNA-packaging protein B [Enterobacteria phage T3] Length = 586 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 47/387 (12%), Positives = 100/387 (25%), Gaps = 88/387 (22%) Query: 19 LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78 L+ A+ F F+ F W P+ P + Q++ + + + Sbjct: 10 LVVAQLKGDFVAFL--FVLWKALNLPV-----PTKCQIDMAKVLANGDNK---------- 52 Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK-NTLWAEVSKWLSMLPH 137 K + A RGIGK+ + ++W + P + I+ ++ S+ + N+++ + + +LP Sbjct: 53 KFILQAFRGIGKSFITCAFVVWTLWRDPQLKILIVSASKERADLNSIF--IKNIIDLLPF 110 Query: 138 RHWFEMQSLSLHPSGWYAE-LLEQSMGIDSKHYTITCRTY----------SEERPDTFVG 186 + + + K IT + E P Sbjct: 111 LDELKPSPGQRDSVISFDVGPAKPDHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSAT 170 Query: 187 PHNTHGMAVFNDEASGT-------------PDIINKSILGFFTE--LNPNRFWIMTSNTR 231 + E ++ + W Sbjct: 171 QGAREKLWTLVQEFRALLKPLPTSRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRS 230 Query: 232 RLNGWFY------DIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI- 284 R +Y + + ++ Q D YG + + Sbjct: 231 REEDLYYGERLAPMLREEFNDGFEMLQGQPTDPVRFDMEDLRERELEYGKAGFTLQFMLN 290 Query: 285 ----LGQ-FPQQEVNNFIPHNYIEEA----------MSREAIDD---------------- 313 + +P + + + E+A +R Sbjct: 291 PNLSDAEKYPLRLRDAIVCGLDFEKAPMHYQWLPNRQNRNEELPNVGLKGDDIHSYHSCS 350 Query: 314 ----LYAPLIMGCDIAGEGGDKTVVVF 336 Y I+ D +G G D+T Sbjct: 351 QNTGQYQQRILVIDPSGRGKDETGYAV 377 >gi|203288341|ref|YP_002223391.1| bsr protein [Borrelia recurrentis A1] gi|201085561|gb|ACH95134.1| bsr protein [Borrelia recurrentis A1] Length = 412 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 42/290 (14%), Positives = 83/290 (28%), Gaps = 43/290 (14%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST-----RPGMS 109 Q E + + N K + G GKT L +++++ L+ + Sbjct: 11 QKEVLRDI----------DNNFCSKIIFNGGISSGKTFLASYLLIKLLIINRDNYHKDTN 60 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 +S L ++ K S+L + + S + Sbjct: 61 NFIFGSSIGTLLANTLKQIEKICSLLNIEYLL-----------------KDSRQVTCTIA 103 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 +T Y + D+F ++ V+ +EA+ I+ + I +N Sbjct: 104 GLTLNIYGGKNIDSFTKIRGSNSALVYVNEATLMHKETLLEIMKRLRQ--KPGIIIFDTN 161 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 +F + + ++ Y F + + Y S +LG++ Sbjct: 162 PDHPAHYFKVDYIDNRDVYRTYNFSIYDNPLNSKDFIKTQEAIYKNLSAYKARVLLGEWT 221 Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVFRR 338 + F + I IM D A G D T + Sbjct: 222 ASIDSCF--NEVILNCEYTFKSP------IMYIDPAFSVGMDNTAICVFE 263 >gi|325272814|ref|ZP_08139151.1| DNA maturase B [Pseudomonas sp. TJI-51] gi|324102019|gb|EGB99528.1| DNA maturase B [Pseudomonas sp. TJI-51] Length = 562 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 44/375 (11%), Positives = 81/375 (21%), Gaps = 84/375 (22%) Query: 27 SFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR 86 F+ F+ W P +P Q + + +C I A R Sbjct: 13 DFRKFIYLV--WKHLNLP-----EPTPVQYDIARYLQHGPR-----------RCVIEAFR 54 Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G+GK+ + A + WL+ P + I+ ++ S + M +H Sbjct: 55 GVGKSWVTAAFVCWLLWRNPQLRILVVSASSARADAFSTFVKRLIHEMPLLQHLKPGPDQ 114 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSE----------ERPDTFVGPHNTHGMAVF 196 + K I + E P+ ++ Sbjct: 115 IDKMVAFEVAPALPDQSPSVKSVGIMGQITGSRADIIIADDIEIPNNSATQMMRDKLSEA 174 Query: 197 NDEASGT-------------PDIINKSILGFFTELNPNR-FWIMTSNTRRLNGWFYD--- 239 E S+ E W Y Sbjct: 175 VKEFDAILKPLQSARIIYLGTPQCEMSLYNRLPERGYEIRVWPALY-PTLQKVPHYKGSL 233 Query: 240 --IFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG------QFPQQ 291 +E D ++ YG + + +FP + Sbjct: 234 APFITQAMEADPSLSGKPTDPRRFDDKDLMERMASYGRAGFALQFMLDTSLSDGDKFPLK 293 Query: 292 EVNNFI------------------------------PHNYIEEAMSREAIDDLYAPLIMG 321 + + + M + Y +M Sbjct: 294 VQDLMVMNLNPIMAHVKLAWAASPELCINDMPTVALTGDRFYRPMWHASEMSEYTGCVMA 353 Query: 322 CDIAGEGGDKTVVVF 336 D +G G D+T Sbjct: 354 IDPSGRGQDETGYAV 368 >gi|212712338|ref|ZP_03320466.1| hypothetical protein PROVALCAL_03426 [Providencia alcalifaciens DSM 30120] gi|212685084|gb|EEB44612.1| hypothetical protein PROVALCAL_03426 [Providencia alcalifaciens DSM 30120] Length = 411 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 40/269 (14%), Positives = 74/269 (27%), Gaps = 28/269 (10%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLIST----RPGMSIICIANSETQLKNTLWAEVSKW 131 ++C+ GRG KT A M I+C L+ + EV + Sbjct: 22 KRYRCSY-GGRGSAKTRTFALMSAVRAYQASNNGESGVILCAREFMNSLEESSMEEVKQA 80 Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191 + +P + + + +D K + C R + Sbjct: 81 IRAVP------------WLAAHFDIGEKYIRTVDRKVSYVFC----GLRHNLDSIKSKAR 124 Query: 192 GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKR 250 + + DEA + + + E N W+ N + F +D Sbjct: 125 ILLCWVDEAETVSETAWQKLDPTVREDNSE-IWVTW-NPEKDGSATDKRFRKNASDDCIT 182 Query: 251 YQIDTRTVEGIDSGFH-EGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309 +++ S R LD G + + + Y E + Sbjct: 183 VEMNYSDNPWFPSVLEGVRQKDRERLDDATYAWVWEGAYLENSEKQVLAGKY-EIRSFSD 241 Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338 + L+ G D G D + R+ Sbjct: 242 DLWKKADRLLFGADF-GFAKDPNTL-LRQ 268 >gi|251810445|ref|ZP_04824918.1| large terminase subunit [Staphylococcus epidermidis BCM-HMP0060] gi|251806049|gb|EES58706.1| large terminase subunit [Staphylococcus epidermidis BCM-HMP0060] Length = 420 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 34/291 (11%), Positives = 85/291 (29%), Gaps = 29/291 (9%) Query: 72 NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131 + GRG GK++ + ++ + R M+ + + ++ L +++ ++ Sbjct: 21 TKDREKLNIVAKGGRGSGKSSDISIIIT-QLIMRYPMNAVVVRKTDNTLATSVFEQIKWA 79 Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191 + H F+++ + + + I R + Sbjct: 80 IEEQKVSHLFKVKVSPM------------EITYVPRGNRIIFRGAQNPERLKSLKDSRFP 127 Query: 192 GMAVFNDE-ASGTPDIINKSILGFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--I 243 ++ +E A + +I + + N R W + Sbjct: 128 FSIMWIEELAEFKTEDEVTTITNSMLRGELDDGLFYKFFFSYNPPKRKQSWVNKKYETSF 187 Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303 ++ + I F + S + R E +G+ +P N ++ Sbjct: 188 QPDNTFVHHSTYLDNPFISKQFIQEAESAKERNEQRYRWEYMGEAIGSG---VVPFNNLQ 244 Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGN----IIEHIFDWSA 350 + + D + + G D G D V + +I I ++ Sbjct: 245 IETIPQEMIDGFDNIRNGLDF-GYADDPLAFVRWHYDKKKRVIYAIDEYYG 294 >gi|323940932|gb|EGB37119.1| hypothetical protein ERDG_02336 [Escherichia coli E482] Length = 443 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 53/288 (18%), Positives = 82/288 (28%), Gaps = 38/288 (13%) Query: 81 AISAGRGIGKTTLNAWMMLWLI---STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 A+ GR GKT + + + RPGM I AE ++ + Sbjct: 27 AVRCGRRWGKTFMLSSAAVTYATSQFRRPGMDIELGGRVG-----IFTAEYRQYQEIYDK 81 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + LL+ ID D + + Sbjct: 82 LEEILLPLKKSFSRQEKRLLLKNGGKIDFWVTN-----------DNKLAGRGREYEIILI 130 Query: 198 DEASG------TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY 251 DEA+ +I KSI + T + +FY I + + + Sbjct: 131 DEAAFTKSPEMLKEIWPKSIKPTLLTTKGRAYVFSTPDGVDEENFFYAICHNKDLGFHEH 190 Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311 T + + E R D V R E L +F + E +++ Sbjct: 191 HAPTSSNPFVPPEELEK--ERQNNDPRVFRQEFLAEFVDWSAASLFDVRKWFEGENQDQP 248 Query: 312 DDLYA---PLIMGCDIAGEGG---DKTVVVF-----RRGNIIEHIFDW 348 D + D A +GG D T VV+ R G I DW Sbjct: 249 VDYPEMCQAVFAVMDTAVKGGTDHDGTAVVYYAVDTRPGIQRLTILDW 296 >gi|218964078|ref|YP_002455438.1| putative phage terminase, pbsx family protein [Borrelia afzelii ACA-1] gi|216752969|gb|ACJ73583.1| putative phage terminase, pbsx family protein [Borrelia afzelii ACA-1] Length = 450 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 47/288 (16%), Positives = 84/288 (29%), Gaps = 43/288 (14%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMS 109 Q E + ++ H T K S G GKT L +++++ + + Sbjct: 49 QKEVLFDIESH----------TYSKVIFSGGIASGKTFLASYLLIKKLIENKSFYEQDTN 98 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I NS L ++ K +L + + +S EL Sbjct: 99 NFIIGNSIGLLMTNTIKQIEKICGLLGI-DYQKKKSGQSFCKIAGLELN----------- 146 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 Y + D F + ++ +EA+ + I +N Sbjct: 147 -----IYGGKNRDAFSKIRGGNSAIIYVNEATVIHKETL--LEVMKRLRKGKSIIIFDTN 199 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 +F + + +K Y T + F E Y + G++ Sbjct: 200 PESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIETQEKLYKHFPAYKARVLYGEWV 259 Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336 E + F E +++ + IM D A GGD T V Sbjct: 260 LNESSLFN-----EMIFNQDYE---FKSPIMYIDPAFSVGGDNTAVCV 299 >gi|117621599|ref|YP_853855.1| hypothetical protein BAPKO_2028 [Borrelia afzelii PKo] gi|110890985|gb|ABH02150.1| hypothetical protein BAPKO_2028 [Borrelia afzelii PKo] Length = 450 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 47/288 (16%), Positives = 84/288 (29%), Gaps = 43/288 (14%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMS 109 Q E + ++ H T K S G GKT L +++++ + + Sbjct: 49 QKEVLFDIESH----------TYSKVIFSGGIASGKTFLASYLLIKKLIENKSFYEQDTN 98 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I NS L ++ K +L + + +S EL Sbjct: 99 NFIIGNSIGLLMTNTIKQIEKICGLLGI-DYQKKKSGQSFCKIAGLELN----------- 146 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 Y + D F + ++ +EA+ + I +N Sbjct: 147 -----IYGGKNRDAFSKIRGGNSAIIYVNEATVIHKETL--LEVMKRLRKGKSIIIFDTN 199 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 +F + + +K Y T + F E Y + G++ Sbjct: 200 PESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIETQEKLYKHFPAYKARVLYGEWV 259 Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336 E + F E +++ + IM D A GGD T V Sbjct: 260 LNESSLFN-----EMIFNQDYE---FKSPIMYIDPAFSVGGDNTAVCV 299 >gi|222147998|ref|YP_002548955.1| large terminase [Agrobacterium vitis S4] gi|221734986|gb|ACM35949.1| large terminase [Agrobacterium vitis S4] Length = 459 Score = 73.4 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 34/277 (12%), Positives = 73/277 (26%), Gaps = 30/277 (10%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM--SIICIA 114 + + H + GRG GKT A + + S I + Sbjct: 56 RLARSWALLRHPLQAPPEGAWRNWLLMGGRGSGKTRAGAEWVHEIASAGEKSAVRIALVG 115 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 + + + +S + H+ E++ Sbjct: 116 ETLGDAREVMVDGLSGIARIARHK-RPEVEISRRRL------------------VWPNGA 156 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRR 232 + + DE + + + + R + + T R Sbjct: 157 MAQMFSAEDPESLRGPQFHYAWCDEIAKWKHAEETFDMLQFSLRLGDDPRQ--VITTTPR 214 Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292 + P + GF E + +RYG + R E+ G+ + Sbjct: 215 PVPILKRLLADPGTR-LTRLSTFGNACNLAPGFIEALQARYGGT-RLGRQELDGELIEDR 272 Query: 293 VNNFIPHNYIEEAMSREAIDDLYAPLIMGCD-IAGEG 328 + + +E+ R + +++G D +G G Sbjct: 273 EDALWRRDRLEQLTVRLSEP--LHRIVVGVDPPSGAG 307 >gi|329735579|gb|EGG71866.1| phage terminase, large subunit, PBSX family [Staphylococcus epidermidis VCU028] Length = 420 Score = 73.4 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 34/291 (11%), Positives = 85/291 (29%), Gaps = 29/291 (9%) Query: 72 NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131 + GRG GK++ + ++ + R M+ + + ++ L +++ ++ Sbjct: 21 TKDRKKLNVVAKGGRGSGKSSDISIIIT-QLIMRYPMNAVVVRKTDNTLATSVFEQIKWA 79 Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191 + H F+++ + + + I R + Sbjct: 80 IEEQKVSHLFKVKVSPM------------EITYVPRGNRIIFRGAQNPERLKSLKDSRFP 127 Query: 192 GMAVFNDE-ASGTPDIINKSILGFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--I 243 ++ +E A + +I + + N R W + Sbjct: 128 FSIMWIEELAEFKTEDEVTTITNSMLRGELDDGLFYKFFFSYNPPKRKQSWVNKKYETSF 187 Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303 ++ + I F + S + R E +G+ +P N ++ Sbjct: 188 QPDNTFVHHSTYLDNPFISKQFIQEAESTKERNELRYRWEYMGEAIGSG---VVPFNNLQ 244 Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGN----IIEHIFDWSA 350 + + D + + G D G D V + +I I ++ Sbjct: 245 IETIPQEMIDGFDNIRNGLDF-GYADDPLAFVRWHYDKKKRVIYAIDEYYG 294 >gi|296445591|ref|ZP_06887546.1| protein of unknown function DUF264 [Methylosinus trichosporium OB3b] gi|296256836|gb|EFH03908.1| protein of unknown function DUF264 [Methylosinus trichosporium OB3b] Length = 442 Score = 73.4 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 37/264 (14%), Positives = 74/264 (28%), Gaps = 35/264 (13%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSML 135 I +GRG GKT A + + RP I I + +++ + VS L+ Sbjct: 58 ILSGRGAGKTRAGAEWVKGIARGRPQFATRPLSPIALIGETAADVRDVMIEGVSGILAAH 117 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 +S + + A Sbjct: 118 SRSERPLWESSRRRLT------------------FDNGVVAQAFSAEDPESLRGPQFAAA 159 Query: 196 FNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253 + DE + + + + R + T R + Sbjct: 160 WCDELAKWRYAEETWDMLQFGLRLGDWPRQLVT--TTPRPMPLIKRLLTEN-GVAVTRAK 216 Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 + F E ++S+YG + R E+ G+ +Q + + +E A R Sbjct: 217 TRANAANLAPSFLETVLSQYGGT-RLGRQELDGEIVEQRADALWTRDMLERA--RILAPP 273 Query: 314 LYAPLIMGCDI---AGEGGDKTVV 334 +++ D +G+ D+ + Sbjct: 274 PLERIVVAIDPPASSGKRADRCGI 297 >gi|115523910|ref|YP_780821.1| hypothetical protein RPE_1893 [Rhodopseudomonas palustris BisA53] gi|115517857|gb|ABJ05841.1| protein of unknown function DUF264 [Rhodopseudomonas palustris BisA53] Length = 423 Score = 73.4 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 35/278 (12%), Positives = 72/278 (25%), Gaps = 38/278 (13%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSMLPH 137 GRG GKT A + P I + +E ++ + VS L++ P Sbjct: 40 GGRGSGKTRAGAEWIRAQALGLPPFADRPMSRIALVGETEHDVREVMIEGVSGLLAVHPR 99 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 Q + ++ Sbjct: 100 HERPNWQPSRKRLE------------------WKNGAVAQAFSAEDPESLRGPQFSCAWS 141 Query: 198 DEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255 DE + + + R + + T R + PL + T Sbjct: 142 DEMAKWRYAEATFDMLQFGLRLGPQPRQ--LITTTPRPIALLKRLIADPLS--VVTRAPT 197 Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY 315 R + + + + + R E+ G+ + + IE+ R Sbjct: 198 RANAFNLAPTFLQSVMKRYDGTRLGRQELDGEIIEDRPDALWSRALIEQC--RVEAAPPL 255 Query: 316 APLIMGCDI---AGEGGDKTVVV---FRRGNIIEHIFD 347 +++ D + + D +V N++ + D Sbjct: 256 RRIVVAVDPPVSSTKRSDACGIVAAGLADNNVVHVLAD 293 >gi|37526791|ref|NP_930135.1| hypothetical protein plu2901 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786223|emb|CAE15275.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 409 Score = 73.4 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 35/257 (13%), Positives = 65/257 (25%), Gaps = 26/257 (10%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGM----SIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 GRG KT A M I+C L+ + EV + + +P Sbjct: 29 GGRGSAKTRTFAMMSAVRAYQAAESGTSGVILCAREFMNSLEESSMEEVKQAIRSIP--- 85 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 W + E + + R + + + DE Sbjct: 86 -------------WLDDYFEIGEKYIRTKNRLVNYVFCGLRHNLDSIKSKARILLAWIDE 132 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTV 258 A + K + E W+ N + P + +++ Sbjct: 133 AESVSETAWKKLRPTVRESGSE-IWVTW-NPEKDGSATDKRLRKKPPKSSIIVEMNYSDN 190 Query: 259 EGIDSGFHEGIISR-YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317 E LD G + + + + Y E+ + + Sbjct: 191 PWFPDVLEEERQEDLESLDHSDYAWIWEGAYLENSEKQVLANKYKIESF-PDDLWMQADR 249 Query: 318 LIMGCDIAGEGGDKTVV 334 L+ G D G D + + Sbjct: 250 LLFGADF-GFARDPSTL 265 >gi|37956903|gb|AAP34169.1| gene 19 [Enterobacteria phage T7] Length = 586 Score = 73.4 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 45/386 (11%), Positives = 97/386 (25%), Gaps = 86/386 (22%) Query: 19 LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78 L+ A+ F F+ F W P+ P + Q++ + + + Sbjct: 10 LVVAQLKGDFLAFL--FVLWKALNLPV-----PTKCQIDMAKVLANGDNK---------- 52 Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 K + A RGIGK+ + ++W + P + I+ ++ S+ + + + +LP Sbjct: 53 KFILQAFRGIGKSFITCAFVVWSLWRDPQLKILIVSASKERADANSIF-IKNIIDLLPFL 111 Query: 139 HWFEMQSLSLHPSGWYAEL-----------LEQSMGIDSKHYTITCRTYSEERPDTFVGP 187 + + + G + E P Sbjct: 112 SELKPRPGQRDSVISFDVGPANPDHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATM 171 Query: 188 HNTHGMAVFNDEASGT-------------PDIINKSILGFFTE--LNPNRFWIMTSNTRR 232 + E + ++ + W R Sbjct: 172 GAREKLWTLVQEFAALLKPLSSSRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRTR 231 Query: 233 LNGWFYDIFNIP------LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-- 284 +Y P E+ + D YG + + Sbjct: 232 EENLYYSQRLAPMLRAEYDENPEALAGTPTDPVRFDRDDLRERELEYGKAGFTLQFMLNP 291 Query: 285 ---LGQ-FPQQEVNNFIPHNYIEEA-MSREAIDD-------------------------- 313 + +P + + + +E+A M + + + Sbjct: 292 NLSDAEKYPLRLRDAIVAALDLEKAPMHYQWLPNRQNIIEDLPNVGLKGDDLHTYHDCSN 351 Query: 314 ---LYAPLIMGCDIAGEGGDKTVVVF 336 Y I+ D +G G D+T Sbjct: 352 NSGQYQQKILVIDPSGRGKDETGYAV 377 >gi|295688413|ref|YP_003592106.1| hypothetical protein Cseg_0983 [Caulobacter segnis ATCC 21756] gi|295430316|gb|ADG09488.1| protein of unknown function DUF264 [Caulobacter segnis ATCC 21756] Length = 445 Score = 73.1 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 39/296 (13%), Positives = 78/296 (26%), Gaps = 36/296 (12%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 + + H + +F GRG GKT A ++ + G + + + Sbjct: 54 RTLRIREDHQLPPPDPWVTWLF----LGGRGAGKTYAGAAWLIEQATA--GARLALVGPT 107 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 ++ + S ++ ++ T Sbjct: 108 FHDVREVMIEGPSGLKALSLPDEHPRWEASRRRL------------------VWPNGATA 149 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLN 234 + A + DE P + R + T + + Sbjct: 150 YAFSAEDPDSLRGPQFHAAWADEFCAWPKPGDTLAMLRFGLRLGADPRLVVT--TTPKPH 207 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294 + P + + F + S YG +A E+ G + + Sbjct: 208 RALKVLMAEP-GVSLTRAGTSANAGNLAPAFLRTLESLYGGT-RLAAQELDGVIVETDGG 265 Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCD-IAGEGGDKTVVVF--RRGNIIEHIFD 347 F + +R A D +++ D A GGD +V RR + + D Sbjct: 266 LFRAEDLARCRAARPARLD---RVVVAVDPPATAGGDACGIVVVGRRDDRAFVLAD 318 >gi|296141561|ref|YP_003648804.1| terminase [Tsukamurella paurometabola DSM 20162] gi|296029695|gb|ADG80465.1| Terminase [Tsukamurella paurometabola DSM 20162] Length = 489 Score = 73.1 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 51/353 (14%), Positives = 87/353 (24%), Gaps = 64/353 (18%) Query: 29 KNFVMRF--FPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR 86 + F+ F KG + WQ++ V V P R Sbjct: 25 ERFLAFADKFLRVPKGTGAKGKLHLRDWQVDVARDVLDSGARTVGIMFP----------R 74 Query: 87 GIGKTTLNAWMMLW-LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 G GKTTLNA + L+ + G ++ +A E Q S Sbjct: 75 GQGKTTLNAAIALYRFFTGGEGANVCVVAVDERQA--------------------GLAFS 114 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 + EL + + Y T + + P + + DEA Sbjct: 115 AARRMVELNEELSARCQIFKDRLYLPTTDSVFQCLPASPTALEGLDYVLALVDEAGVVNR 174 Query: 206 IINKSILGFFTELNPNRFWIMTSNT-------------------RRLNGWFYDIFNIPL- 245 + + + + + F+ Sbjct: 175 DVFEVVQ-LAQGKREKSVLVAIGTPGPNLDDQVLLSLRDYHLEHPDDASLRWREFSAAGF 233 Query: 246 EDWKRYQIDTRT--VEGIDSGFHEGIIS---RYGLDSDVARIEILGQFPQQEVNNFIPHN 300 ED +D H + R L QF +F+P Sbjct: 234 EDHPVDCTHCWELANPALDDFLHRDALVALLPPKTRESTFRRARLCQFAADTEGSFLPAG 293 Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVV---VFRRGNIIEHIFDWSA 350 E + E + L A +++ D + D T + + W Sbjct: 294 VWEGLSTGEPVP-LGAEVVIALDGS-FSDDTTALLLGTVAAAPHFHPLRVWER 344 >gi|87307615|ref|ZP_01089759.1| hypothetical protein DSM3645_28877 [Blastopirellula marina DSM 3645] gi|87289785|gb|EAQ81675.1| hypothetical protein DSM3645_28877 [Blastopirellula marina DSM 3645] Length = 429 Score = 73.1 bits (177), Expect = 6e-11, Method: Composition-based stats. Identities = 34/287 (11%), Positives = 68/287 (23%), Gaps = 37/287 (12%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P Q E + H + GR GKT A ++ ++ Sbjct: 26 PLPHQREILRDRHRHKR--------------VICGRRWGKT--GAGLIAAILGHGDPS-- 67 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLH-PSGWYAELLEQSMGIDSKHY 169 W + ++ F +A + + + Sbjct: 68 ---GPGH-------WKGMVDGGTLYWVAPTFAQSKKIERDIMLAFANSGLVYVKSEGRIE 117 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNPNRFWIMTS 228 + + + + V + DE + + ++ ++ R W M Sbjct: 118 HPSGGSITIKTAAAPVSLRGEGLDGMIGDEFAFVRKEVWSDALRPALSD---RRGWSMFL 174 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 T W D ++ D T + E + L E QF Sbjct: 175 TTPNGPNWMKDQHDLDGVDPTYKSWQCPTSDNCLIDQAELDSALLDLGQASFDQEYRAQF 234 Query: 289 PQQEVNNFIPHNYIEEA---MSREAIDDLYAPLIMGCDIAGEGGDKT 332 Y + + ++G D + DK+ Sbjct: 235 VDVS-GAEFSGLYFQTPKFWFDDWPPESEIRFRVIGLDPSKGKNDKS 280 >gi|114320225|ref|YP_741908.1| hypothetical protein Mlg_1066 [Alkalilimnicola ehrlichii MLHE-1] gi|114226619|gb|ABI56418.1| hypothetical protein Mlg_1066 [Alkalilimnicola ehrlichii MLHE-1] Length = 463 Score = 73.1 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 44/294 (14%), Positives = 86/294 (29%), Gaps = 34/294 (11%) Query: 66 CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC---IANSETQLKN 122 + + + GR GK+ A + ++ + + +A + + Sbjct: 50 LTDRESAPQSAHDELWLVVGRRGGKSNAAALLAVYEACFKDHRDALAPGEVATTRVMAAD 109 Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182 A R F S +H + L+ + D + ++ R E Sbjct: 110 RAQA-----------RSVFRYISGLMHANPMLERLIVRE---DRESIELSNRAVIEVGTA 155 Query: 183 TFVGPHNTHGMAVFNDEASGT--------PDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 +F AV DE + I ++ LN I S+ Sbjct: 156 SFRTTRGYTFAAVIADEVAFWRSDDSANPDSEIIAAVRPGLATLNGKL--IALSSPYARR 213 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGII-SRYGLDSDVARIEILGQFPQQEV 293 G ++ + + ++ E ++ D A E L +F + +V Sbjct: 214 GELWENYRRHYGKASPILVAQAPSRTMNPSLPERVVTEAMERDPASAAAEYLAEF-RTDV 272 Query: 294 NNFIPHNYIEEAMSREAIDDLYA---PLIMGCDIAGEGGDK--TVVVFRRGNII 342 F+ +E A ++ Y D AG G D+ + R G + Sbjct: 273 ETFLQREVVEAATRPTPLELPYNKRVTYTAFVDPAGGGADEFTAAIGHREGERV 326 >gi|194100512|ref|YP_002003357.1| gp19 [Yersinia phage Yepe2] gi|193201245|gb|ACF15726.1| gp19 [Yersinia phage Yepe2] Length = 585 Score = 73.1 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 44/384 (11%), Positives = 97/384 (25%), Gaps = 88/384 (22%) Query: 22 AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81 A+ F F+ F W P +P + Q++ + H K Sbjct: 13 AQLKGDFVAFL--FVLWKALNLP-----KPTKCQIDMARTLADGDHK----------KFI 55 Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + A RGIGK+ + ++W++ P + ++ ++ S+ + + + +LP Sbjct: 56 LQAFRGIGKSFITCAFVVWVLWRDPQLKVLIVSASKERADANSIF-IKNIIDLLPFLAEL 114 Query: 142 EMQSLSLHPSGWYAELL-EQSMGIDSKHYTITCRTY----------SEERPDTFVGPHNT 190 + + + L + K IT + E P Sbjct: 115 KPRPGQRDSVISFDVGLAKPDHSPSVKSVGITGQLTGSRADIIIADDVEVPGNSSTSSAR 174 Query: 191 HGMAVFNDEASGT-------------PDIINKSILGFFTE--LNPNRFWIMTSNTRRLNG 235 + E + ++ + W R Sbjct: 175 EKLWTLVTEFAALLKPLPTSRVIYLGTPQTEMTLYKELEDNKGYSTVIWPAQY-PRNDAE 233 Query: 236 WFYDIFNIP-------LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI---- 284 Y + E ++ + D+ YG + + Sbjct: 234 ALYYGDRLAPMLKAEYDEGFEILRGQPTDPVRFDTDDLRERELEYGKAGYTLQFMLNPNL 293 Query: 285 -LGQ-FPQQEVNNFI----------PHNYIEEAMSREAIDD------------------- 313 + +P + + + + ++ +R Sbjct: 294 SDAEKYPLRLRDAIVCAVDPERAPLSYQWLPNRQNRNEELPNVGLKGDDIHSFHTCSSRT 353 Query: 314 -LYAPLIMGCDIAGEGGDKTVVVF 336 Y I+ D +G G D+T Sbjct: 354 AEYQSKILVIDPSGRGKDETGYAV 377 >gi|308451045|ref|XP_003088525.1| hypothetical protein CRE_30323 [Caenorhabditis remanei] gi|308247019|gb|EFO90971.1| hypothetical protein CRE_30323 [Caenorhabditis remanei] Length = 490 Score = 73.1 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 29/298 (9%), Positives = 73/298 (24%), Gaps = 49/298 (16%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 +S R +GKT L +++ L P ++++ A+ T H Sbjct: 54 VQLSIPRQVGKTFLVGMIIIALCILTPRLTVLWTAHRTKTATKTFQTMQGMVKKKKIRGH 113 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 ++ + EQ + + + + G DE Sbjct: 114 LAPGRNDGIR-----TANGEQEIRFRNGSVIMFGA------REGGFGRGFDEVDIEVFDE 162 Query: 200 ASGTPDIINKSILGFFTELNPN--RFWIMTSNTRRLNGWFYDIFNI-------------- 243 A + + ++ + R + Sbjct: 163 AQILTEKALEDMVAATNQSRQKSGALLFFMGTPPRATDPGEEWLERRNDALEIKPMDQVV 222 Query: 244 ------------------PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285 P + + + + + + D + E + Sbjct: 223 GLSEDTVYVEFSADKDADPDDMEQLAKANPSFPHRTPLESVMRMRKNL-KNEDSFKREAM 281 Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTV-VVFRRGNII 342 G + + I + + + + L + D+A + +V + RR + + Sbjct: 282 GIYDALDSGQVI--DDVSWSRVADPASMPIERLTLAIDVAPDRSMASVSLAGRRADGL 337 >gi|150016242|ref|YP_001308496.1| hypothetical protein Cbei_1360 [Clostridium beijerinckii NCIMB 8052] gi|149902707|gb|ABR33540.1| conserved hypothetical protein [Clostridium beijerinckii NCIMB 8052] Length = 521 Score = 73.1 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 31/343 (9%), Positives = 98/343 (28%), Gaps = 49/343 (14%) Query: 15 LHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSN 74 +++ + F F K L F ++ Q +FME + Sbjct: 1 MNDEEKFLKVWNDPALFSYNFMEIQDKNDELVPFK-FNKLQRDFMENMS----------- 48 Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 + + + R +G + + +WL T P + + ++ ++ K ++ ++ + Sbjct: 49 --RYNIILKS-RQLGFSVMICAYAIWLAITTPNSNCLMLSYNDES-KRAIFNKLKQIYKS 104 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 +P + +++ S Sbjct: 105 IPEE-----------VKPKLLRNNRSELQMENGSII------SCSPMGNVDKGRGNTCSL 147 Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NIPLEDWKRY 251 ++ E + + + + + ++ ++ T +F+ ++ +K + Sbjct: 148 IWISEFAFVKSDVAEKQILSLEQALNSKGKLIIETTANGLNFFHGMYIKSKRKENFYKSF 207 Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARI----------EILGQFPQQEVNNFIPHNY 301 + + + +E + + E+L +P ++ + Sbjct: 208 FYNYLDGKEMFLEQYEEARDTWKNLHNNVPFSEKDLKDDEKELLKNYPNMTLDVL---CW 264 Query: 302 IEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEH 344 + + D + D+A +V +R + + Sbjct: 265 RRLKIENSSEDKFNQEYPISDDVAFISTGASVFDNKRVSTVLQ 307 >gi|227500282|ref|ZP_03930349.1| terminase [Anaerococcus tetradius ATCC 35098] gi|227217568|gb|EEI82880.1| terminase [Anaerococcus tetradius ATCC 35098] Length = 466 Score = 73.1 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 38/315 (12%), Positives = 89/315 (28%), Gaps = 49/315 (15%) Query: 39 GIKGKPLEHFSQ--PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96 G + + + P+ WQ + ++ + + + + R GKT + Sbjct: 22 GQEAIDIYKKTGLSPYPWQEKLIKDIFAVNDDGLWTHSKFGYAV----PRRNGKTEIVYM 77 Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156 LW + G +II A+ + + + ++ K+L + + +S+ Sbjct: 78 AELWFLM--DGKNIIHTAHRISTSH-SSFKKLKKYLEKMGLVDKVDFKSIKAKGQ----- 129 Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT 216 + RT + + DEA + ++ T Sbjct: 130 -EMIELIKTGGVIQFRTRTETGGL--------GEGFDLLVIDEAQEYTEGQESALKYTVT 180 Query: 217 ELNPNRFWIMTSNTRR--LNGWFYDIFNIPL-------EDWKRYQIDTRTVEGIDSGFHE 267 + + +M G + + + W + + T +++ Sbjct: 181 DSDNPMI-LMCGTPPTLVSGGTVFSKYRDLILSGGKNHNGWAEWSVSEMTNPYDIDAWYK 239 Query: 268 ------------GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY 315 + G D I+ LG + + + I + + + L Sbjct: 240 TNPSMGYKLRERAVEEEIGPDETDFNIQRLGYWVKYNQKSVISKLDWDR-LKLTRLPSLV 298 Query: 316 APLIMGCDIAGEGGD 330 L +G G D Sbjct: 299 GKLHVGI---KYGND 310 >gi|212671426|ref|YP_002308426.1| DNA packaging protein B [Kluyvera phage Kvp1] gi|211997270|gb|ACJ14587.1| DNA packaging protein B [Kluyvera phage Kvp1] Length = 585 Score = 73.1 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 45/387 (11%), Positives = 98/387 (25%), Gaps = 88/387 (22%) Query: 19 LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78 L+ A+ F F+ F W P +P + Q++ + H Sbjct: 10 LIVAQLKGDFVAFL--FVLWKALNLP-----KPTKCQIDMARTLANGDHK---------- 52 Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 K + A RGIGK+ + ++W++ P + ++ ++ S+ + + + +LP Sbjct: 53 KFILQAFRGIGKSFITCAFVVWVLWRDPQLKVLIVSASKERADANSIF-IKNIIDLLPFL 111 Query: 139 HWFEMQSLSLHPSGWYAELL-EQSMGIDSKHYTITCRTY----------SEERPDTFVGP 187 + + + L + K IT + E P Sbjct: 112 AELKPRPGQRDSVISFDVGLAKPDHSPSVKSVGITGQLTGSRADIIIADDVEVPGNSSTS 171 Query: 188 HNTHGMAVFNDEASGT-------------PDIINKSILGFFTE--LNPNRFWIMTSNTRR 232 + E + ++ + W R Sbjct: 172 SAREKLWTLVTEFAALLKPLPTSRVIYLGTPQTEMTLYKELEDNKGYSTVIWPAQY-PRN 230 Query: 233 LNGWFYDIFNIP-------LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI- 284 Y + E ++ + D YG + + Sbjct: 231 DAEALYYGDRLAPMLKAEYDEGFELLRGQPTDPVRFDMDDLRERELEYGKAGYTLQFMLN 290 Query: 285 ----LGQ-FPQQEVNNFI----------PHNYIEEAMSREAIDD---------------- 313 + +P + + + + ++ +R Sbjct: 291 PNLSDAEKYPLRLRDAIVCAVDTERAPLSYQWLPNRQNRNEELPNVGLKGDDIHSFHVCS 350 Query: 314 ----LYAPLIMGCDIAGEGGDKTVVVF 336 Y I+ D +G G D+T Sbjct: 351 SKTAEYQQKILVIDPSGRGKDETGYAV 377 >gi|330507947|ref|YP_004384375.1| phage terminase, large subunit, PBSx family [Methanosaeta concilii GP-6] gi|328928755|gb|AEB68557.1| phage terminase, large subunit, PBSx family [Methanosaeta concilii GP-6] Length = 422 Score = 73.1 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 35/267 (13%), Positives = 74/267 (27%), Gaps = 30/267 (11%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + V + P + R KT +L I T P +I+ + N+ T L Sbjct: 5 ELPVGKQRDFILEEPARINLLYGSVRST-KTWSVNIKILKDILTLPTGNILFVGNTGTSL 63 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 + + + + ++ I + I + Sbjct: 64 YRNVLTPIKDLVG----------------EKNFELRAGKKECEIFGRTVWIEG----ADN 103 Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240 ++ + + DE + P+ +L ++ + +T N + Y Sbjct: 104 TSSYKKIEGESLLRAYVDEGTTIPENFTNMLLSRLSDKGACLY--LTCNPETPRNYIYRN 161 Query: 241 FNIPLED--WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIP 298 + ++ K ++ + + + Y + ILG + E F Sbjct: 162 WIARQDELNIKVWKFTLDDNPYLPLEYKRDLEKEYPKGTVFYDRFILGNWVAAEGRVF-- 219 Query: 299 HNYIEEAMSREAIDDLYAP--LIMGCD 323 M E P L +G D Sbjct: 220 -GLFARGMHCEVPPATLRPKELRIGAD 245 >gi|37956745|gb|AAP34014.1| gene 19 [Enterobacteria phage T7] Length = 586 Score = 73.1 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 45/386 (11%), Positives = 97/386 (25%), Gaps = 86/386 (22%) Query: 19 LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78 L+ A+ F F+ F W P+ P + Q++ + + + Sbjct: 10 LVVAQLKGDFVAFL--FVLWKALNLPV-----PTKCQIDMAKVLANGDNK---------- 52 Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 K + A RGIGK+ + ++W + P + I+ ++ S+ + + + +LP Sbjct: 53 KFILQAFRGIGKSFITCAFVVWSLWRDPQLKILIVSASKERADANSIF-IKNIIDLLPFL 111 Query: 139 HWFEMQSLSLHPSGWYAEL-----------LEQSMGIDSKHYTITCRTYSEERPDTFVGP 187 + + + G + E P Sbjct: 112 SELKPRPGQRDSVISFDVGPANPDHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATM 171 Query: 188 HNTHGMAVFNDEASGT-------------PDIINKSILGFFTE--LNPNRFWIMTSNTRR 232 + E + ++ + W R Sbjct: 172 GAREKLWTLVQEFAALLKPLPSSRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRTR 231 Query: 233 LNGWFYDIFNIP------LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-- 284 +Y P E+ + D YG + + Sbjct: 232 EENLYYSQRLAPMLRAEYDENPEALAGTPTDPVRFDRDDLRERELEYGKAGFTLQFMLNP 291 Query: 285 ---LGQ-FPQQEVNNFIPHNYIEEA-MSREAIDD-------------------------- 313 + +P + + + +E+A M + + + Sbjct: 292 NLSDAEKYPLRLRDAIVAALDLEKAPMHYQWLPNRQNIIEDLPNVGLKGDDLHTYHDCSN 351 Query: 314 ---LYAPLIMGCDIAGEGGDKTVVVF 336 Y I+ D +G G D+T Sbjct: 352 NLGQYQQKILVIDPSGRGKDETGYAV 377 >gi|37956850|gb|AAP34117.1| gene 19 [Enterobacteria phage T7] Length = 586 Score = 73.1 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 45/386 (11%), Positives = 97/386 (25%), Gaps = 86/386 (22%) Query: 19 LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78 L+ A+ F F+ F W P+ P + Q++ + + + Sbjct: 10 LVVAQLKGDFVAFL--FVLWKALNLPV-----PTKCQIDMAKVLANGDNK---------- 52 Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 K + A RGIGK+ + ++W + P + I+ ++ S+ + + + +LP Sbjct: 53 KFILQAFRGIGKSFITCAFVVWSLWRDPQLKILIVSASKERADANSIF-IKNIIDLLPFL 111 Query: 139 HWFEMQSLSLHPSGWYAEL-----------LEQSMGIDSKHYTITCRTYSEERPDTFVGP 187 + + + G + E P Sbjct: 112 SELKPRPGQRDSVISFDVGPANPDHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATM 171 Query: 188 HNTHGMAVFNDEASGT-------------PDIINKSILGFFTE--LNPNRFWIMTSNTRR 232 + E + ++ + W R Sbjct: 172 GAREKLWTLVQEFAALLKPLSSSRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRTR 231 Query: 233 LNGWFYDIFNIP------LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-- 284 +Y P E+ + D YG + + Sbjct: 232 EENLYYSQRLAPMLRAEYDENPEALAGTPTDPVRFDRDDLRERELEYGKAGFTLQFMLNP 291 Query: 285 ---LGQ-FPQQEVNNFIPHNYIEEA-MSREAIDD-------------------------- 313 + +P + + + +E+A M + + + Sbjct: 292 NLSDAEKYPLRLRDAIVAALDLEKAPMHYQWLPNRQNIIEDLPNVGLKGDDLHTYHDCSN 351 Query: 314 ---LYAPLIMGCDIAGEGGDKTVVVF 336 Y I+ D +G G D+T Sbjct: 352 NSGQYQQKILVIDPSGRGKDETGYAV 377 >gi|9627482|ref|NP_042010.1| DNA maturation protein [Enterobacteria phage T7] gi|137615|sp|P03694|VDMB_BPT7 RecName: Full=DNA maturase B; AltName: Full=DNA-packaging protein B; AltName: Full=GP19 gi|579206|emb|CAA24440.1| unnamed protein product [Enterobacteria phage T7] gi|37956692|gb|AAP33962.1| gene 19 [Enterobacteria phage T7] gi|265525013|gb|ACY75876.1| DNA maturation protein [Enterobacteria phage T7] Length = 586 Score = 73.1 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 45/386 (11%), Positives = 97/386 (25%), Gaps = 86/386 (22%) Query: 19 LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78 L+ A+ F F+ F W P+ P + Q++ + + + Sbjct: 10 LVVAQLKGDFVAFL--FVLWKALNLPV-----PTKCQIDMAKVLANGDNK---------- 52 Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 K + A RGIGK+ + ++W + P + I+ ++ S+ + + + +LP Sbjct: 53 KFILQAFRGIGKSFITCAFVVWSLWRDPQLKILIVSASKERADANSIF-IKNIIDLLPFL 111 Query: 139 HWFEMQSLSLHPSGWYAEL-----------LEQSMGIDSKHYTITCRTYSEERPDTFVGP 187 + + + G + E P Sbjct: 112 SELKPRPGQRDSVISFDVGPANPDHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATM 171 Query: 188 HNTHGMAVFNDEASGT-------------PDIINKSILGFFTE--LNPNRFWIMTSNTRR 232 + E + ++ + W R Sbjct: 172 GAREKLWTLVQEFAALLKPLPSSRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRTR 231 Query: 233 LNGWFYDIFNIP------LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-- 284 +Y P E+ + D YG + + Sbjct: 232 EENLYYSQRLAPMLRAEYDENPEALAGTPTDPVRFDRDDLRERELEYGKAGFTLQFMLNP 291 Query: 285 ---LGQ-FPQQEVNNFIPHNYIEEA-MSREAIDD-------------------------- 313 + +P + + + +E+A M + + + Sbjct: 292 NLSDAEKYPLRLRDAIVAALDLEKAPMHYQWLPNRQNIIEDLPNVGLKGDDLHTYHDCSN 351 Query: 314 ---LYAPLIMGCDIAGEGGDKTVVVF 336 Y I+ D +G G D+T Sbjct: 352 NSGQYQQKILVIDPSGRGKDETGYAV 377 >gi|163850863|ref|YP_001638906.1| hypothetical protein Mext_1434 [Methylobacterium extorquens PA1] gi|163662468|gb|ABY29835.1| protein of unknown function DUF264 [Methylobacterium extorquens PA1] Length = 458 Score = 72.7 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 43/290 (14%), Positives = 81/290 (27%), Gaps = 35/290 (12%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTR------PGMS 109 +EA +H + P + A+ GRG GKT A + L P Sbjct: 47 RLLEADWLHLARHDQLPPPGNWTTWAVIGGRGSGKTRTGAEWVRGLAHGDPVFTPEPVER 106 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I + + +++ + S L++ G + + S + Sbjct: 107 IALVGETFADVRDVMIEGPSGLLALPRL--------------GGAPPVWQPSRR---RVV 149 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMT 227 + AV++DE + + I R + Sbjct: 150 FGNGAVALAFSAEEPDSLRGPQFGAVWSDEVAKWREAEATYDMIQFGLRLGTHPRGLVT- 208 Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287 T R + P + + F E ++ RY + R E+ G+ Sbjct: 209 -TTPRPVPLIRRLLADPRT-VVTRSRTADNAQNLAPSFLEEVVGRYAGT-RLRRQELDGE 265 Query: 288 FPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVV 334 + + + IE A EA + + D + G D + Sbjct: 266 LIEDRPDALWTRDAIERARVSEAPPLQ--RIAVAIDPPASSRVGADACGI 313 >gi|187476925|ref|YP_784949.1| phage terminase large subunit [Bordetella avium 197N] gi|115421511|emb|CAJ48020.1| Putative phage terminase large subunit [Bordetella avium 197N] Length = 512 Score = 72.7 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 33/222 (14%), Positives = 58/222 (26%), Gaps = 47/222 (21%) Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDII--NKSILGFFTELNPNRFWIMTSNTRRLN-- 234 + P + DEA+ + T+ +MT N Sbjct: 129 DNPGDENRWRGRPHDLIVLDEATELREHQARFVLGWNRTTKAGQRCRVLMTFNPPTTVEG 188 Query: 235 --------GWFYDIFNIPLEDWKRYQIDTRTVEGIDSG------------------FHEG 268 W P + + + ++ F Sbjct: 189 RWVVEYFAPWLDPKHPHPAKPGELRWFAVIDGKEVEVEGGAPFAHNGETIVPRSRTFIPS 248 Query: 269 IISR-------------YGLDSDVARIEILGQFPQQEVN---NFIPHNYIEEAMSREAID 312 I+ L + + G F + IP ++E A +R Sbjct: 249 RIADNPFLMGTGYESVLQSLPEPLRSQMLYGDFNAGIEDDPWQVIPTAWVEAAQARWKRP 308 Query: 313 DLYAPLI-MGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353 D AP+ +G D+A G DKT++ R G + + K Sbjct: 309 DRLAPMDSLGLDVARGGRDKTILARRHGWWFDEPLVYPGKDT 350 >gi|326536146|ref|YP_004300581.1| gp19 [Enterobacteria phage 285P] gi|256861535|gb|ACV32491.1| gp19 [Enterobacteria phage 285P] Length = 585 Score = 72.7 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 45/387 (11%), Positives = 98/387 (25%), Gaps = 88/387 (22%) Query: 19 LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78 L+ A+ F F+ F W P +P + Q++ + H Sbjct: 10 LIVAQLKGDFVAFL--FVLWKALNLP-----KPTKCQIDMARTLANGDHK---------- 52 Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 K + A RGIGK+ + ++W++ P + ++ ++ S+ + + + +LP Sbjct: 53 KFILQAFRGIGKSFITCAFVVWVLWRDPQLKVLIVSASKERADANSIF-IKNIIDLLPFL 111 Query: 139 HWFEMQSLSLHPSGWYAELL-EQSMGIDSKHYTITCRTY----------SEERPDTFVGP 187 + + + L + K IT + E P Sbjct: 112 SELKPRPGQRDSVISFDVGLAKPDHSPSVKSVGITGQLTGSRADIIIADDVEVPGNSSTS 171 Query: 188 HNTHGMAVFNDEASGT-------------PDIINKSILGFFTE--LNPNRFWIMTSNTRR 232 + E + ++ + W R Sbjct: 172 SAREKLWTLVTEFAALLKPLPTSRVIYLGTPQTEMTLYKELEDNKGYSTVIWPAQY-PRN 230 Query: 233 LNGWFYDIFNIP-------LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI- 284 Y + E ++ + D YG + + Sbjct: 231 DAEALYYGDRLAPMLKTEYDEGFELLRGQPTDPVRFDMDDLRERELEYGKAGYTLQFMLN 290 Query: 285 ----LGQ-FPQQEVNNFI----------PHNYIEEAMSREAIDD---------------- 313 + +P + + + + ++ +R Sbjct: 291 PNLSDAEKYPLRLRDAIVCAVDPERAPLSYQWLPNRQNRNEELPNVGLKGDDIHAFHTCS 350 Query: 314 ----LYAPLIMGCDIAGEGGDKTVVVF 336 Y I+ D +G G D+T Sbjct: 351 SRTAEYQSKILVIDPSGRGKDETGYAV 377 >gi|99080642|ref|YP_612796.1| hypothetical protein TM1040_0801 [Ruegeria sp. TM1040] gi|99036922|gb|ABF63534.1| hypothetical protein TM1040_0801 [Ruegeria sp. TM1040] Length = 416 Score = 72.7 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 79/283 (27%), Gaps = 29/283 (10%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 A G G GKT + + P A + +++T W V + L Sbjct: 24 AYVGGFGSGKTYVGCLDLGLFAGQHPKTVQGYFAPTYRDIRDTFWPTVDEAAHSLGF--- 80 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + + + E + Y T S + P DE Sbjct: 81 ----TTKVKSADKEVE------FYRGRSYYGTTICRSMDDPGG---IVGFKIARALVDEI 127 Query: 201 SGTPDIINKSILGFFTELNPNRF-----WIMTSNTRRLNGWFYDIF-NIPLEDWKRYQID 254 ++ I + T + YD F P ++ Q Sbjct: 128 DILSKDKAQAAWRKIIARMRLVLPGVVNGIGVTTTPEGFRFVYDSFKREPKSNYSMVQAS 187 Query: 255 TRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 T E + + ++ Y + + + ++G+F +Y Sbjct: 188 TYENEAFLPPDYISTLLEDYPEE--LIKAYLMGEFVNLTSGTVY-RSYDRLRHRSTQSIQ 244 Query: 314 LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQET 356 PL +G D G +VV +RG + + +Q+T Sbjct: 245 PREPLHIGQDF-NVGNMASVVFVQRGEDWHAVDELQG--LQDT 284 >gi|310286612|ref|YP_003937870.1| phage terminase [Bifidobacterium bifidum S17] gi|309250548|gb|ADO52296.1| phage terminase [Bifidobacterium bifidum S17] Length = 483 Score = 72.7 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 35/295 (11%), Positives = 74/295 (25%), Gaps = 46/295 (15%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 RWQ + + + A+S R +GKT + +P +++ Sbjct: 45 DRWQDDLCRLMLA--KRADGEYAASAGGVAMSLCRQVGKTFTVGTNAAIMCLLQPDFTVL 102 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A+ + AE K + + + ++ + ++S+ + + Sbjct: 103 WTAH-----RTRTSAETFKSMQAIVRQPGLTRHVKAIRRANG-----QESIEFANGSRIL 152 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 DEA + ++ T N + Sbjct: 153 FGAREQGFGRG------FAGIDMEIFDEAQILTEKALDDMVPA-TNAAKNPLIVFMGTPP 205 Query: 232 RLNGWFY-----------------------DIFNIPLEDWKRYQIDTRTVEGIDSGFHEG 268 R N D P + + + + Sbjct: 206 RPNDPGDVFKLKRSQGLANEDGMTYVEFSADRDADPHDRNQWAKANPSYPTRTKPAAMLR 265 Query: 269 IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323 ++ G DS R E LG + + I + ++A + G D Sbjct: 266 MLKNLGEDS--FRREALGIWDETTDRRAIDPDQWQQA--ETGERRPGGWVAFGVD 316 >gi|21241826|ref|NP_641408.1| phage-related DNA maturase [Xanthomonas axonopodis pv. citri str. 306] gi|21107205|gb|AAM35944.1| phage-related DNA maturase [Xanthomonas axonopodis pv. citri str. 306] Length = 526 Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 44/373 (11%), Positives = 78/373 (20%), Gaps = 81/373 (21%) Query: 27 SFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR 86 F+NF W P P Q + + + + A R Sbjct: 17 DFRNFAFDL--WTHLALP-----SPTPVQYDICSYLQHGPRRRM-----------VQAFR 58 Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G+GK+ L A + WL+ P I+ ++ S+ + + P H Sbjct: 59 GVGKSFLTAGYVCWLLWKDPQHKIMVVSASKERADAFSVFVKQIIETFEPLSHLRPRSDQ 118 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTY----------SEERPDTFVGPHNTHGMAVF 196 + K IT + E +A Sbjct: 119 RNSNLAFDVGPALPDQSPSVKSVGITGQLTGSRANTIIPDDIEVVKNSQTIVQREKLAEL 178 Query: 197 NDEASGT------------PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF--- 241 E P R W Y Sbjct: 179 IKEFDAVLKPGGQVIYLGTPQTEESLYNKLPERGYDIRIWPARFPKNMKQRVAYGAMLAP 238 Query: 242 --NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG------QFPQQEV 293 +D + D + YG + + ++P + Sbjct: 239 VIAAAFDDNQALAWTPTDSRRFDEKDLMEREASYGRAGFALQFMLDTTLSDAEKYPLKLS 298 Query: 294 NNF------------------------------IPHNYIEEAMSREAIDDLYAPLIMGCD 323 + + + M + + +M D Sbjct: 299 DFIVMDVDREVAPIRVVWSSGKQHVVEELPSVGFSGDRWHQPMYVAPEMEEFTGSLMTVD 358 Query: 324 IAGEGGDKTVVVF 336 +G GGD+T Sbjct: 359 PSGRGGDETGFCV 371 >gi|146310462|ref|YP_001175536.1| hypothetical protein Ent638_0800 [Enterobacter sp. 638] gi|145317338|gb|ABP59485.1| conserved hypothetical protein [Enterobacter sp. 638] Length = 445 Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 45/366 (12%), Positives = 100/366 (27%), Gaps = 44/366 (12%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIKGKP--LEHFSQ---- 50 P + + L + ++E + + K F WG+ P L++ Sbjct: 12 PDYQLVFEWRMERLQRIRQNSEMLPALKQFYRTNPAQFIIDWGMTTDPRNLDYGLPATIP 71 Query: 51 ----PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 P Q E++ + S + R +G + + + L Sbjct: 72 FLLFPR--QEEWINWIMDRRSSLEHGLTEKS--------REMGLSWTSIGLACSLCLFNK 121 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 M I + E + ++ + + ++ +A + Sbjct: 122 EMVIGFGSRKEEYV-DSTGDPKALFWKARKFVETLPVEFRGSWDEKKHAPYMRVEFPD-- 178 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226 + F DEA+ + T I Sbjct: 179 -------TGAVIKGEAGDNIGRGDRTTLYFVDEAAFLQRPLLIDAALSQTTRCR----ID 227 Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 S+ ++ F + + R+ D+ ++ + + + E+ Sbjct: 228 LSSVNGMSNPFAQKRH--SGKIPVFTFHWRSDPRKDNEWYRKECEKI-DNPVIVAQELDL 284 Query: 287 QFPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEH 344 + IP +++ A+ + DIA EG DK R G +++ Sbjct: 285 NYQASAEGILIPSEWVQAAVDAHIKLGIQPSGQRLGSMDIADEGKDKNGFSSRYGFLLQS 344 Query: 345 IFDWSA 350 + +WS Sbjct: 345 VHEWSG 350 >gi|283780022|ref|YP_003370777.1| hypothetical protein Psta_2246 [Pirellula staleyi DSM 6068] gi|283438475|gb|ADB16917.1| conserved hypothetical protein [Pirellula staleyi DSM 6068] Length = 465 Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 39/297 (13%), Positives = 86/297 (28%), Gaps = 51/297 (17%) Query: 68 SNVNNSNPTIFKCAI-SAGRGIGKTTLNAWMMLW---------LISTRPGMSIICIANSE 117 N + F A+ GR GK+ + A + + +ST + A ++ Sbjct: 53 RNPHKLPDDGFNTALFLTGRRSGKSRIAAVIASYEAALAGRESRLSTGERGVVAVCAPTK 112 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177 Q + V ++ + + +L + +++ Sbjct: 113 YQAR-----VVKDYIRGC-----------------FTSPMLSGEVTQETQEGFTLANGVR 150 Query: 178 EER-PDTFVGPHNTHGMAVFNDEASGT----------PDIINKSILGFFTELNPNRFWIM 226 + +A DEA+ + ++I + I Sbjct: 151 IAVLAGDWRTIRGYTLLAAIVDEAAFFGYDAESKVKSDTELIRAIKPGLATVGGKL--IA 208 Query: 227 TSNTRRLNGWFYDIF--NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 S+ GW + + N + K + + I D A+ E Sbjct: 209 ISSPYARKGWCFKTYQRNFGNNEGKTLVWNCPSKTMNPKLPQSVIDEALAEDLASAKAEY 268 Query: 285 LGQFPQQEVNNFIPHNYIEEAM---SREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338 LG+F + +V+ F+P + + + E + + D++G D + Sbjct: 269 LGEF-RDDVSLFLPREVVAKLVVPGRYELLPNQKHRYFGFADLSGGRSDDAALAIAH 324 >gi|152969966|ref|YP_001335075.1| hypothetical protein KPN_01413 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150954815|gb|ABR76845.1| hypothetical protein KPN_01413 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 434 Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 46/301 (15%), Positives = 87/301 (28%), Gaps = 34/301 (11%) Query: 61 AVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119 A+ + +K A AG G GKT + + + P ++ A + Q Sbjct: 2 AIAPTLNIPQAKFLAMQYKFKAYVAGFGSGKTWVGCGGICKGMWEHPKINQGYFAPTYPQ 61 Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 +++ + V + + E ++ + Y T S E Sbjct: 62 IRDIFYPTVEEVAHDWG-------------LNVKINEGNKEVHFYAGRQYRGTTICRSME 108 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFT-ELNPNRFWIMTSNTRRLN 234 +P DE P + + I+ + R I + T Sbjct: 109 KP---QTIVGFKIGNALIDELDVMPAKKAQLAWRKIIARMRYNVAGLRNGIDVTTTPEGF 165 Query: 235 GWFYDIFNIPLED-------WKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILG 286 + Y F + D + Q T E + + ++ Y ++ + + G Sbjct: 166 KFVYQQFAKAVRDKPSLSTLYGLVQASTFDNEKNLPPDYIPSLMESY--PPELIKAYLRG 223 Query: 287 QFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346 QF + RE + PL +G D G VV R + + Sbjct: 224 QFTNLTSGTIYHQFDRKLNNCRE-EEQPGEPLYIGMDF-NVGKMAGVVHVLRLGLPFAVT 281 Query: 347 D 347 + Sbjct: 282 E 282 >gi|170748408|ref|YP_001754668.1| hypothetical protein Mrad2831_1990 [Methylobacterium radiotolerans JCM 2831] gi|170654930|gb|ACB23985.1| conserved hypothetical protein [Methylobacterium radiotolerans JCM 2831] Length = 478 Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 41/304 (13%), Positives = 74/304 (24%), Gaps = 45/304 (14%) Query: 60 EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN-------AWMMLWLISTRPGMSI-- 110 A+ + + GR GK+ A ++ + PG I Sbjct: 50 RAIFTALTGREREPERPVDELWGIVGRRGGKSRAFSVLGAYLAGLVDYSAVQAPGERIKL 109 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 +A++ Q + + R + S +E Sbjct: 110 PIMASTTVQAAKIFSYMLGVFEHSAELRDMVDGDPTSETIRLLSGVDIEV---------- 159 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-------PDI-INKSILGFFTELNPNR 222 RP + DE + PD I ++ Sbjct: 160 ---------RPANYKTIRGETLAGCLADEVAFWHLENSANPDTLILDAVRPGLATTGGPL 210 Query: 223 FWIMTSNTRRLNGWFYDIFNI---PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279 + S+ G Y P D + + S + Y D Sbjct: 211 --CVLSSPYARKGELYRTHQRDFGPSGDPAVLVLRAPSQTMNPSLDPAVVKRAYTRDPAA 268 Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREAI---DDLYAPLIMGCDIAGEGGDKTVVVF 336 A E +F + +V FI ++ M+ + + CD +G G D + Sbjct: 269 ASAEYGAEF-RADVEAFISLEAVQACMAGDLLERAPAPGLTYQAFCDPSGGGADSMTLAI 327 Query: 337 RRGN 340 Sbjct: 328 GHAE 331 >gi|160899533|ref|YP_001565115.1| PBSX family phage terminase large subunit [Delftia acidovorans SPH-1] gi|160365117|gb|ABX36730.1| phage terminase, large subunit, PBSX family [Delftia acidovorans SPH-1] Length = 414 Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 35/268 (13%), Positives = 64/268 (23%), Gaps = 31/268 (11%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM----SIICIANSETQLKNTLWAEV 128 S ++CA GRG KT A M I+ L + E+ Sbjct: 17 SGEARYRCA-HGGRGSAKTRSFAMMTAVRAYMFAEAGVSGVILGAREYMNSLSESSMEEI 75 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188 + + +P W E ++ R + Sbjct: 76 KQAIRSVP----------------WLDAYFEIGEQYIRTKNRRVSYVFAGLRHNLDSIKS 119 Query: 189 NTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLED 247 + + DEA ++ + + E W+ N + F P + Sbjct: 120 KARILIAWVDEAESVSEVAWQKLAPTVREQGSE-IWVTW-NPEKDGSPTDKRFRKEPPPN 177 Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306 K +++ + + D G + + + Y Sbjct: 178 SKVVELNYSDNPWFPEVLDQERQADRDRLDDQTYAWVWDGAYRENSDAQILSGKYRVAEF 237 Query: 307 SREAIDD-LYAPLIMGCDIAGEGGDKTV 333 + D Y L G D T Sbjct: 238 EPQPGWDGPYFGLDWG-----FSQDPTA 260 >gi|126443353|ref|YP_001063348.1| hypothetical protein BURPS668_A2354 [Burkholderia pseudomallei 668] gi|126222844|gb|ABN86349.1| conserved hypothetical protein [Burkholderia pseudomallei 668] Length = 490 Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 37/322 (11%), Positives = 77/322 (23%), Gaps = 46/322 (14%) Query: 43 KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102 L H P R+Q + ++ A R GK + M+ W Sbjct: 8 IELPHNWTPRRYQGRLWNYLIGGGKRAIDI-----------AHRRWGKDEV---MLHWTA 53 Query: 103 STRPGM--SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 + + TQ + +W V+ + + ++ Sbjct: 54 VAAHDRVANYWHMLPKATQARKAIWTAVN------------PHTGKRRIDEAFPEAIRKR 101 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220 + D T+ D + + + E + + + E Sbjct: 102 TRDQDMFIEFNNGSTWQVLGSDNYDNYVGSPPAGIVLSEWALCNPAVWAYLKPILDENGG 161 Query: 221 NRFWIMTSNTRRLNGWFYDI--FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRY----- 273 W T R + + + W + E + Y Sbjct: 162 ---WAAFITTPRGKNHAHKMLQMALANPKWFAEVSNVLKTGRFSLAELEEQRAEYRALYG 218 Query: 274 -GLDSDVARIEILGQFPQQEVNNFIPHNYI---EEAMSREAIDDLYAPLIMGCDIAGEGG 329 + E++ F + + + D P+I D+ Sbjct: 219 EEQGDAMFEQELMCSFEAAILGAYYGKEMAAAERDGRIGRVPHDPNLPVITVWDLGH--S 276 Query: 330 DKTVVVFRRGNI--IEHIFDWS 349 D T + F + + I I + Sbjct: 277 DDTSIWFAQVHWGEIRLIDHYR 298 >gi|114707517|ref|ZP_01440413.1| Phage DNA Packaging Protein [Fulvimarina pelagi HTCC2506] gi|114537076|gb|EAU40204.1| Phage DNA Packaging Protein [Fulvimarina pelagi HTCC2506] Length = 448 Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 38/250 (15%), Positives = 68/250 (27%), Gaps = 35/250 (14%) Query: 84 AGRGIGKTTLNAWMMLWLIS------TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 GRG GKT A + L + P I +A + + + S +++ + Sbjct: 68 GGRGSGKTRAGAEWITGLALGLSPFASLPHRRIALVAETLADAREVMIEGESGLKAIVGN 127 Query: 138 -RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 R FE+ L T + A + Sbjct: 128 ERPVFEVTRRRL--------------------VFANGATAQIFSSEDPDSIRGYQFDAAW 167 Query: 197 NDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254 DE P+ +++ R + + T R + P Sbjct: 168 GDELGKWVKPEESFDNLMLALRLGERPR--ALFTTTPRNVPILKRLMADPQTA-VTRMRT 224 Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314 VE + GF E + RY R E+ G+ + +E + A Sbjct: 225 AENVENLAPGFLEAMARRYDGT-RFGRQELDGELLDDRKDGLFERALVERSRVTNAPP-- 281 Query: 315 YAPLIMGCDI 324 +++ D Sbjct: 282 LKRIVVAVDP 291 >gi|253991059|ref|YP_003042415.1| phage terminase large subunit [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782509|emb|CAQ85673.1| similar to phage terminase large subunit [Photorhabdus asymbiotica] Length = 411 Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 34/257 (13%), Positives = 64/257 (24%), Gaps = 26/257 (10%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGM----SIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 GRG KT A M I+C L+ + EV + + +P Sbjct: 29 GGRGSAKTRTFAMMSAVRAYQAAESGTSGVILCAREFMNSLEESSMEEVKQAIRSIP--- 85 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 W + + + + R + + + DE Sbjct: 86 -------------WLDDYFDIGEKYIRTKNRLVNYVFCGLRHNLDSIKSKARILLAWVDE 132 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY-QIDTRTV 258 A +I K + E W+ N + F +++ Sbjct: 133 AESVSEIAWKKLRPTVRESGSE-IWVTW-NPEKDGSATDKRFRKKPPRSSIIVEMNYSDN 190 Query: 259 EGIDSGFHEGIISR-YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317 E L+ G + + + + Y E+ + + Sbjct: 191 PWFPDVLEEERQEDLESLEHSDYAWIWEGAYLENSEKQVLANKYKIESF-PDDLWMKADR 249 Query: 318 LIMGCDIAGEGGDKTVV 334 L+ G D G D + Sbjct: 250 LLFGADF-GFAKDPNTL 265 >gi|194100300|ref|YP_002003498.1| gp19 [Enterobacteria phage BA14] gi|193201295|gb|ACF15775.1| gp19 [Enterobacteria phage BA14] Length = 585 Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 44/386 (11%), Positives = 98/386 (25%), Gaps = 86/386 (22%) Query: 19 LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78 L+ A+ F F+ F W P +P + Q++ + H Sbjct: 10 LIVAQLKGDFVAFL--FVLWKALNLP-----KPTKCQIDMARTLANGDHK---------- 52 Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 K + A RGIGK+ + ++W++ P + ++ ++ S+ + + + +LP Sbjct: 53 KFILQAFRGIGKSFITCAFVVWVLWRDPQLKVLIVSASKERADANSIF-IKNIIDLLPFL 111 Query: 139 HWFEMQSLSLHPSGWYAELL-EQSMGIDSKHYTITCRTY----------SEERPDTFVGP 187 + + + L + K IT + E P Sbjct: 112 AELKPRPGQRDSVISFDVGLAKPDHSPSVKSVGITGQLTGSRADIIIADDVEVPGNSSTS 171 Query: 188 HNTHGMAVFNDEASGT-------------PDIINKSILGFFTE--LNPNRFWIMTSNTRR 232 + E + ++ + W Sbjct: 172 SAREKLWTLVTEFAALLKPLPTSRVIYLGTPQTEMTLYKELEDNKGYSTVIWPAQYPRND 231 Query: 233 LNGWFY------DIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-- 284 +Y + E ++ + D YG + + Sbjct: 232 AEALYYGDRLAPMLKQEYDEGYEILRGQPTDPIRFDMDDLRERELEYGKAGYTLQFMLNP 291 Query: 285 ---LGQ-FPQQEVNNFI----------PHNYIEEAMSREAIDD----------------- 313 + +P + + + + ++ +R Sbjct: 292 NLSDAEKYPLRLRDAIVCAVDTERAPLSYQWLPNRQNRNEELPNVGLKGDDIHSFHVCSS 351 Query: 314 ---LYAPLIMGCDIAGEGGDKTVVVF 336 Y I+ D +G G D+T Sbjct: 352 KTAEYQQKILVIDPSGRGKDETGYAV 377 >gi|253990592|ref|YP_003041948.1| Phage terminase, large subunit [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782042|emb|CAQ85206.1| Phage terminase, large subunit [Photorhabdus asymbiotica] Length = 405 Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 34/257 (13%), Positives = 64/257 (24%), Gaps = 26/257 (10%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGM----SIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 GRG KT A M I+C L+ + EV + + +P Sbjct: 23 GGRGSAKTRTFAMMSAVRAYQAAESGTSGVILCAREFMNSLEESSMEEVKQAIRSIP--- 79 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 W + + + + R + + + DE Sbjct: 80 -------------WLDDYFDIGEKYIRTKNRLVNYVFCGLRHNLDSIKSKARILLAWVDE 126 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY-QIDTRTV 258 A +I K + E W+ N + F +++ Sbjct: 127 AESVSEIAWKKLRPTVRESGSE-IWVTW-NPEKDGSATDKRFRKKPPRSSIIVEMNYSDN 184 Query: 259 EGIDSGFHEGIISR-YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317 E L+ G + + + + Y E+ + + Sbjct: 185 PWFPDVLEEERQEDLESLEHSDYAWIWEGAYLENSEKQVLANKYKIESF-PDDLWMKADR 243 Query: 318 LIMGCDIAGEGGDKTVV 334 L+ G D G D + Sbjct: 244 LLFGADF-GFAKDPNTL 259 >gi|85059645|ref|YP_455347.1| hypothetical protein SG1667 [Sodalis glossinidius str. 'morsitans'] gi|84780165|dbj|BAE74942.1| hypothetical phage protein [Sodalis glossinidius str. 'morsitans'] Length = 413 Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 74/267 (27%), Gaps = 27/267 (10%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLIST----RPGMSIICIANSETQLKNTLWAEVSKW 131 ++CA GRG KT + A M I+C L+ + EV Sbjct: 21 KRYRCAY-GGRGSAKTRIFALMTAVKAYQAARNSESGVILCAREFMNSLEESSMQEVKLA 79 Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191 + +P + + + +D + + +S R + Sbjct: 80 IQSVP------------WLAAHFDIGEKYIRTLDRRVSYV----FSGLRHNLDSIKSKAR 123 Query: 192 GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED-WKR 250 + + DEA +I + + E W+ N F +D Sbjct: 124 ILLCWVDEAETVSEIAWQKLDPTVREPGSEV-WVTW-NPETEGSATDKRFRKDSDDAIIA 181 Query: 251 YQIDTRTVEGIDSGFHE-GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309 +++ S + LDS G + + + Y+ E + Sbjct: 182 VEMNYMDNPWFHSVLEQVRQRDLRMLDSATYAWIWEGAYLENANKQVMSGKYVFETF-PD 240 Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVF 336 + L G D G D ++ Sbjct: 241 DLWKQADRLFFGADF-GFAQDPNTLIR 266 >gi|167647445|ref|YP_001685108.1| hypothetical protein Caul_3483 [Caulobacter sp. K31] gi|167349875|gb|ABZ72610.1| protein of unknown function DUF264 [Caulobacter sp. K31] Length = 453 Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 39/304 (12%), Positives = 80/304 (26%), Gaps = 33/304 (10%) Query: 38 WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA-W 96 W + + + + + + A+ GRG GKT + Sbjct: 28 WHSLDEETFELV------EQALSDPGFGLNPHQIMPDGEWRIWALFMGRGGGKTYAASKG 81 Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156 + PG + I + + +++T+ S ++ Sbjct: 82 SNVLAEEVFPGGTGILVGATVKDVRDTMIEGESGIIATARPGFVPHYN------------ 129 Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFF 215 D+ D + DE + ++ Sbjct: 130 ------KHDNVLIWPNGSKALIRTADNPEDIRGPTVNWAWADELVKWRSEKSWDNLNRCV 183 Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275 L+ N I+ + T + + + + +D+ + EGI Sbjct: 184 RNLHENGTKIIVTTTPKKAKQWIKDIESLPGTIVS-RASSLDNPHMDAAYLEGIRREAET 242 Query: 276 DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR-----EAIDDLYAPLIMGCDIAGEGGD 330 S AR EI G++ + IEE R E + + D + D Sbjct: 243 GSARAREEIFGEWIEG-DGELWTEKSIEEMRQRPSVSLEVMAKSMDRRYISVDPSSGKHD 301 Query: 331 KTVV 334 +T + Sbjct: 302 ETGI 305 >gi|332884414|gb|EGK04674.1| hypothetical protein HMPREF9456_03377 [Dysgonomonas mossii DSM 22836] Length = 450 Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 36/263 (13%), Positives = 70/263 (26%), Gaps = 18/263 (6%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GK+ L ++ + P + LK T + K SM + Sbjct: 29 GGGKSILESYWLTKNSLKYPDTKWLLGRAKMKTLKETTLKSLFKVFSMQG------ITPN 82 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 +G + ++ + I + F + DE S + Sbjct: 83 YYKYNGANDKENPNTIQFYNGSLIILKDLFYYPSDPEFDELGSLEITGAAIDENSQITEK 142 Query: 207 INKSILGFFTELNPN----RFWIMTSNTRRL--NGWFYDIFNIP--LEDWKRYQIDTRTV 258 ++ N + FY +D Q Sbjct: 143 CWNIVMSRIRHDVAKNGLIPKMFGACNPTKNFVYNRFYKPHRDGILPDDKAFIQALVTDN 202 Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318 +D + E + + D + G++ + + + ++ Y + P Sbjct: 203 PFVDKFYIENLKNL---DPISRARLLDGEW-EYDDDPYVLMQYEKIVDLFTNSHVSGGPR 258 Query: 319 IMGCDIAGEGGDKTVVVFRRGNI 341 M D+A G D T + G I Sbjct: 259 YMTIDVARLGKDDTTIRIWEGLI 281 >gi|224796679|ref|YP_002641707.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi WI91-23] gi|224553883|gb|ACN55283.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi WI91-23] Length = 450 Score = 71.9 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 43/288 (14%), Positives = 85/288 (29%), Gaps = 43/288 (14%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMS 109 Q E + ++ + K S G GKT L +++++ + + Sbjct: 49 QKEVLFDIESN----------NYSKVIFSGGIASGKTFLASYLLVKKLIENKSFYEQDTN 98 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I NS L ++ K S+L + + +S +L Sbjct: 99 NFIIGNSIGLLMTNTVKQIEKICSLLGI-DYEKKKSGQSFCKIAGLKLN----------- 146 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 Y + D F + ++ +EA+ ++ + I +N Sbjct: 147 -----IYGGKNRDAFSKIRGGNSAIIYVNEATVIHRETLLEVIKRLRKG--KEIIIFDTN 199 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 +F + + +K Y T + F + Y + G++ Sbjct: 200 PESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIQTQEKLYRRFPAYRARVLYGEWI 259 Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336 E F E +++ + IM D A GGD T + Sbjct: 260 LNESMLFN-----EMIFNQDYE---FKSPIMYIDPAFSVGGDNTAICV 299 >gi|298346517|ref|YP_003719204.1| phage terminase protein [Mobiluncus curtisii ATCC 43063] gi|298236578|gb|ADI67710.1| phage terminase protein [Mobiluncus curtisii ATCC 43063] Length = 470 Score = 71.9 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 75/306 (24%), Gaps = 45/306 (14%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ + + ++ R GKTTL +M + PG + Sbjct: 32 PWQKLVADVAGE--RQAEHPERARYQTVVVTVPRQSGKTTLIKALMAAVAQANPGCQVYY 89 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 A + W E++K L + E+ + ++ + Sbjct: 90 TAQTRKDAVEK-WGELAKQLR----KDMGIAPDGKPRVKVLEGTGNERIVFRGTESMIMP 144 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTP----DIINKSILGF-FTELNPNRFWIMT 227 T G H V DEA D + + T + + I T Sbjct: 145 FAP-------TVEGIHGKTSPLVVVDEAWAFDQARGDDLMAAFNPVGLTIPHSQVWIIST 197 Query: 228 -------------------SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG 268 N F++ + D GF + Sbjct: 198 AGDTRSEWLRSLVDKGRQAINDPGTTTAFFEWSADEEMAAANLRSDEALAFHPAIGFTQE 257 Query: 269 IISRYG----LDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI 324 + + R L +P + + E+ E + +G D+ Sbjct: 258 LWKIQSLAQTEPDHLYRRSYLNLWPTAAETSIVDLEAWEKLAEPEPASMPPD-VAIGFDV 316 Query: 325 --AGEG 328 A G Sbjct: 317 ATARTG 322 >gi|146277344|ref|YP_001167503.1| hypothetical protein Rsph17025_1297 [Rhodobacter sphaeroides ATCC 17025] gi|146278140|ref|YP_001168299.1| hypothetical protein Rsph17025_2103 [Rhodobacter sphaeroides ATCC 17025] gi|145555585|gb|ABP70198.1| protein of unknown function DUF264 [Rhodobacter sphaeroides ATCC 17025] gi|145556381|gb|ABP70994.1| protein of unknown function DUF264 [Rhodobacter sphaeroides ATCC 17025] Length = 476 Score = 71.9 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 34/284 (11%), Positives = 71/284 (25%), Gaps = 32/284 (11%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLIS----TRPGMSIICIANSETQLKNTLWAEVS 129 + + FK + + R GKT + + ++ E Q + + Sbjct: 23 DDSRFKIGMFS-RQTGKTFSTCGECVDDCFTAWKDDRKTRWVILSRGERQAAEAMTEVIK 81 Query: 130 -------KWLSMLPHRHWFEMQSLSLH---PSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 + + L + G A + + Sbjct: 82 PFTRAFYEVYNTLVKGGEPRFEEGEFRAPQEKGPDAVYKALEVAFPNGSRITA------- 134 Query: 180 RPDTFVGPHNTHGMAVFNDEASG--TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 P V DE + I ++ ++ + S F Sbjct: 135 LPANPDTARGFSAN-VILDEFAFHAKSREIWAALFPVISKGRQKLR--VISTPNGKGNKF 191 Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297 Y++ W R+ +D ++ D D E ++ + ++ Sbjct: 192 YELMTAEGSVWSRHVVDIYEAVRQGLDRDVDMLRAGMADEDAWAQEYELKWLDEAS-AWL 250 Query: 298 PHNYIEEAMSR---EAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338 ++ I S + P +G DIA D V+ Sbjct: 251 DYDLISSCESELAGKPEGYQGGPCFVGVDIAAR-NDLFVIWVME 293 >gi|288934973|ref|YP_003439032.1| hypothetical protein Kvar_2101 [Klebsiella variicola At-22] gi|288889682|gb|ADC58000.1| protein of unknown function DUF264 [Klebsiella variicola At-22] Length = 434 Score = 71.9 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 46/304 (15%), Positives = 87/304 (28%), Gaps = 34/304 (11%) Query: 61 AVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119 A+ + +K A AG G GKT + + + P ++ A + Q Sbjct: 2 AIAPTLNIPQAKFLAMQYKFKAYVAGFGSGKTWVGCGGICKGMWEHPKINQGYFAPTYPQ 61 Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 +++ + V + + E ++ + Y T S E Sbjct: 62 IRDIFYPTVEEVAHDWG-------------LNVKINEGNKEVHFYAGRQYRGTTICRSME 108 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFT-ELNPNRFWIMTSNTRRLN 234 +P DE P + + I+ + R I + T Sbjct: 109 KP---QTIVGFKIGNALIDELDVMPAKKAQLAWRKIIARMRYNVAGLRNGIDVTTTPEGF 165 Query: 235 GWFYDIFNIPLED-------WKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILG 286 + Y F + D + Q T E + + ++ Y ++ + + G Sbjct: 166 KFVYQQFAKAVRDKPSLSTLYGLVQASTFDNEKNLPPDYIPSLMESY--PPELIKAYLRG 223 Query: 287 QFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346 QF + RE + PL +G D G VV R + + Sbjct: 224 QFTNLTSGTIYHQFDRKLNNCRE-EEQPGEPLYIGMDF-NVGKMAGVVHVLRLGLPFAVN 281 Query: 347 DWSA 350 + Sbjct: 282 EIVK 285 >gi|62362215|ref|YP_224140.1| gp2 [Enterobacteria phage ES18] gi|58339058|gb|AAW70473.1| gp2 [Enterobacteria phage ES18] Length = 439 Score = 71.9 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 32/259 (12%), Positives = 66/259 (25%), Gaps = 26/259 (10%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSI----ICIANSETQLKNTLWAEVSKWLSMLPHRH 139 GRG KT A M +I +C L+ + EV + + Sbjct: 29 GGRGSAKTRTFALMTAVKAYQAAEANISGVILCAREYMNSLEESSMEEVKQAIR------ 82 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 W + + + R + + + DE Sbjct: 83 ----------SVAWLDDYFDIGEKYIRTKNRKVSYVFCGLRHNLDSIKSKARILVAWVDE 132 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTV 258 A K + E W+ N + +F P + +++ Sbjct: 133 AESVSSTAWKKLRPTVREEGSE-IWVTW-NPEKDGSATDKLFRKNPPKSSMIVEMNYVDN 190 Query: 259 EGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317 + E D G + + + + Y+ ++ + + Sbjct: 191 PWFPAVLEEERQEDLANLDYADYAWIWEGAYLENSDKQVLANKYVVQSFE-DNLWRKSER 249 Query: 318 LIMGCDIAGEGGDKTVVVF 336 L+ G D G D + ++ Sbjct: 250 LLFGADF-GFAKDPSTLIR 267 >gi|251783038|ref|YP_002997341.1| terminase large subunit [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391668|dbj|BAH82127.1| terminase large subunit [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 424 Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 37/273 (13%), Positives = 78/273 (28%), Gaps = 25/273 (9%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 NP I A GRG GK++ A ++ + + ++ +CI ++ L+ +++ ++ +S Sbjct: 22 NPKILNIACKGGRGSGKSSNIA-FIISRLIIQYPVNAVCIRKTDNTLEQSVYEQIKWAIS 80 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 +F+ L + + I R + Sbjct: 81 EQGLERYFKFNKSPLR------------ITYIPRGNYIVFRGAQNPERIKSLKDSRFPFA 128 Query: 194 AVFNDE-ASGTPDIINKSILGFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFNIPLED 247 + +E A + K+I + T N R W + + Sbjct: 129 IGWIEELAEFKTEDEVKTITNSLLRGELGDGLFYKFFYTYNPPKRKQSWVNKKYESQFQP 188 Query: 248 WKRY--QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA 305 + + I F + R E LG+ +P + + Sbjct: 189 KNTFVHASTYKDNPFIAKEFIAEAEATRERSERRYRWEYLGEAIGSG---VVPFDNLRFE 245 Query: 306 MSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338 + + + + D G D V Sbjct: 246 TIPDELYRSFDNIRNAVDF-GYATDPLAFVRWH 277 >gi|75675353|ref|YP_317774.1| hypothetical protein Nwi_1160 [Nitrobacter winogradskyi Nb-255] gi|74420223|gb|ABA04422.1| Protein of unknown function DUF264 [Nitrobacter winogradskyi Nb-255] Length = 422 Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 34/269 (12%), Positives = 66/269 (24%), Gaps = 33/269 (12%) Query: 65 HCHSNVNNSNPTIFKCAIS-AGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSE 117 H N + + GRG GKT A + P I + +E Sbjct: 20 HQRPPELAPNGAPWLIWLMIGGRGAGKTRAGAEWVRAQALGLPPFAGEAVSRIALVGETE 79 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177 + + VS L++ Sbjct: 80 HDAREVMIEGVSGLLAVHAAHERPSWSPSRKRLE------------------WSNGAVAQ 121 Query: 178 EERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 D ++DE + + + + R + + T R Sbjct: 122 AFSADDPESLRGPQFGCAWSDEMAKWRYAEAAFDMLQFGLRLGSQPRQ--LITTTPRPTA 179 Query: 236 WFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN 295 + N P + F +G+++RY + R E+ G+ + + Sbjct: 180 LLKRLMNDPAS-VVTRAPTQANAFNLAPTFLQGVMARYAGT-RLGRQELDGEIIEDRPDA 237 Query: 296 FIPHNYIEEAMSREAIDDLYAPLIMGCDI 324 +E EA +++ D Sbjct: 238 LWSRALLERCRVSEAPPLQ--RIVVAVDP 264 >gi|240137990|ref|YP_002962462.1| hypothetical protein MexAM1_META1p1321 [Methylobacterium extorquens AM1] gi|240007959|gb|ACS39185.1| conserved hypothetical protein [Methylobacterium extorquens AM1] Length = 421 Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 44/290 (15%), Positives = 83/290 (28%), Gaps = 35/290 (12%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTR------PGMS 109 +EA +H + P + A+ GRG GKT A + L P Sbjct: 10 RLLEADWLHLARHDQLPPPGNWTTWAVIGGRGSGKTRTGAEWVRGLAQGDPVFTPEPVER 69 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I + + +++ + S L++ G + + S + Sbjct: 70 IALVGETFADVRDVMIEGPSGLLALPRL--------------GGAPPVWQPSRR---RVM 112 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMT 227 + AV++DE + + I R + Sbjct: 113 FGNGAVALAFSAEEPDSLRGPQFGAVWSDEVAKWREAETTYDMIQFGLRLGTHPRGLVT- 171 Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287 T R + P + + F E ++ RY + R E+ G+ Sbjct: 172 -TTPRPVPLIQRLLADPRT-VVTRSRTADNAQNLAPSFLEEVVGRYAGT-RLGRQELDGE 228 Query: 288 FPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVV 334 + + + IE A EA + + + D +G G D + Sbjct: 229 LIEDRPDALWTRDSIERARVFEAPPLQH--IAVAIDPPASSGVGADACGI 276 >gi|254418881|ref|ZP_05032605.1| conserved hypothetical protein [Brevundimonas sp. BAL3] gi|196185058|gb|EDX80034.1| conserved hypothetical protein [Brevundimonas sp. BAL3] Length = 356 Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 30/258 (11%), Positives = 64/258 (24%), Gaps = 29/258 (11%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + GRG GKT + + L +++ + + ++ + S ++ Sbjct: 1 MLGGRGSGKTFAGSVWIDTLARKSK-VNLALVGPALHDVREVMVEGASGIKALAEPGDRP 59 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 ++ + A + DE Sbjct: 60 RWEAGRRRL------------------LWKNGSAAYAFSAEDPDSLRGPQFHAAWADEFC 101 Query: 202 GT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 P+ + ++ R + T R + + Sbjct: 102 VWRKPEAVLSNLRFGLRLGAAPRL--AVTTTPRPIPALRRLMAEAGTR-VDRAATALNAK 158 Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319 + GF + YG +A E+ GQ + ++ A +I Sbjct: 159 NLSPGFLAHLSDVYGGT-RLAAQELEGQVVEG-EGALFGVEDLKRARGS--RPAELDRVI 214 Query: 320 MGCD-IAGEGGDKTVVVF 336 + D A GD +V Sbjct: 215 VAVDPPASAHGDACGIVV 232 >gi|237745263|ref|ZP_04575744.1| conserved hypothetical protein [Fusobacterium sp. 7_1] gi|229432492|gb|EEO42704.1| conserved hypothetical protein [Fusobacterium sp. 7_1] Length = 425 Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 40/268 (14%), Positives = 79/268 (29%), Gaps = 23/268 (8%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 K GRG K++ A M+ + P ++I+CI LK +++ ++ + L Sbjct: 35 KIVCKGGRGSAKSSNIALMLTLDLIRNP-INIVCIRKVGETLKKSVYEQIKWAIKQLGVE 93 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDS----KHYTITCRTYSEERPDTFVGPHNTHGMA 194 +FE + L MG+D K + +E + N + Sbjct: 94 DYFEYKLSPLEIRYTERGNKFIFMGVDDPQKSKSIVDSSFPITEYWFEELAEFKNEDEVE 153 Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI---PLEDWKRY 251 + D G + + + + + + W + ++ + Sbjct: 154 MVLD----------SIYRGKLKDNLRYKGFFSYNPPKMKHNWVNKKYEYTFKEDDEIFVH 203 Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311 I F + + + + LG+ N +P + +E Sbjct: 204 HSTYLDNPFISDDFVKRAEAVKLNNPMKYKHTYLGEPI---GNGIVPFDNLEIRTISNEE 260 Query: 312 DDLYAPLIMGCDIAGEGGDKTVVVFRRG 339 G D G G D R G Sbjct: 261 IKGLDRFRNGVD-WGYGVDPMAF-VRWG 286 >gi|159044464|ref|YP_001533258.1| hypothetical protein Dshi_1915 [Dinoroseobacter shibae DFL 12] gi|157912224|gb|ABV93657.1| hypothetical protein Dshi_1915 [Dinoroseobacter shibae DFL 12] Length = 260 Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 45/269 (16%), Positives = 81/269 (30%), Gaps = 53/269 (19%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P WQ+E + A+ GR GKT++ A + + P Sbjct: 31 PDPWQVEAFTTRAT--------------EVALRVGRQSGKTSVLAARAVEELHV-PESLT 75 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 +C+A +E Q K + E+ + L S + + I + Sbjct: 76 LCVAPAERQAK-IIAREIGRQLQ---------------RTSLVINRPTQTELEIANGARV 119 Query: 171 ITCRTYSEERPDTFVGPHN-THGMAVFNDEASGT-----PDIINKSILGFFTELNPNRFW 224 I P T + DE + + + S+L TE Sbjct: 120 IA-------LPSTSDTIRGFPAVSCLIIDECAFLQGDGGGEDLISSVLPMLTEDGQ---V 169 Query: 225 IMTSNTRRLNGWFYDIF--NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI 282 +S N +F +F P + R + + + + E + R Sbjct: 170 FFSSTPAGKNNYFARLFLDAKPGDGIHRIVVRGTDIPRL-ADKVERMRRTLSATK--FRQ 226 Query: 283 EILGQFPQQEVNNFIPHNYIEEAMSREAI 311 EIL + + + + IE+A S+ Sbjct: 227 EILVE-MLADGQAYFDLSIIEQATSKTEK 254 >gi|66396341|ref|YP_240671.1| ORF008 [Staphylococcus phage 88] gi|66396415|ref|YP_240743.1| ORF009 [Staphylococcus phage 92] gi|62636756|gb|AAX91867.1| ORF008 [Staphylococcus phage 88] gi|62636829|gb|AAX91940.1| ORF009 [Staphylococcus phage 92] Length = 421 Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 32/277 (11%), Positives = 77/277 (27%), Gaps = 25/277 (9%) Query: 70 VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129 + + GRG GK++ + ++ + R M+ + I ++ L +++ ++ Sbjct: 20 KVTKDKEVLNVVAKGGRGSGKSSDISIIIT-QLIMRYPMNAVVIRKTDNTLATSVFEQIK 78 Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189 + H F+++ + + + I R + Sbjct: 79 WAIEEQKVSHLFKVKVSPM------------EITYIPRGNRIIFRGAQNPERLKSLKDSR 126 Query: 190 THGMAVFNDE-ASGTPDIINKSILGFF----TELNPNRFWIMTSNTR-RLNGWFYDIFN- 242 + +E A + +I + + + N R W + Sbjct: 127 FPFSIAWIEELAEFKTEDEVTTITNSLLRGELDEGLFYKFFFSYNPPKRKQSWVNKKYES 186 Query: 243 -IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301 ++ + I F + S + R E +G+ +P N Sbjct: 187 SFQADNTYVHHSTYLNNPFISKQFIQEAESAKKRNEQRYRWEYMGEAIGSG---VVPFNN 243 Query: 302 IEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338 + + D + + D G D V Sbjct: 244 LRIEEIPQRQYDTFDNIRNAVDF-GYATDPLAFVRWH 279 >gi|322617167|gb|EFY14073.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617525|gb|EFY14424.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624846|gb|EFY21675.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630396|gb|EFY27166.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634576|gb|EFY31309.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639287|gb|EFY35979.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641951|gb|EFY38570.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646142|gb|EFY42657.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651994|gb|EFY48357.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656167|gb|EFY52464.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659319|gb|EFY55566.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665779|gb|EFY61962.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669983|gb|EFY66124.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673970|gb|EFY70067.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678727|gb|EFY74783.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683477|gb|EFY79491.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687552|gb|EFY83522.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193612|gb|EFZ78817.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198519|gb|EFZ83621.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203541|gb|EFZ88564.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208431|gb|EFZ93370.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213567|gb|EFZ98357.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218397|gb|EGA03107.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219724|gb|EGA04205.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224576|gb|EGA08856.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232391|gb|EGA16494.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235576|gb|EGA19660.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241265|gb|EGA25301.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245007|gb|EGA29009.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250125|gb|EGA34019.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253910|gb|EGA37735.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258780|gb|EGA42436.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262838|gb|EGA46389.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264213|gb|EGA47720.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270910|gb|EGA54348.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 439 Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 33/259 (12%), Positives = 66/259 (25%), Gaps = 26/259 (10%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSI----ICIANSETQLKNTLWAEVSKWLSMLPHRH 139 GRG KT A M +I +C L+ + EV + + Sbjct: 29 GGRGSAKTRTFALMTAVKAYQAAEANISGVILCAREYMNSLEESSMEEVKQAIR------ 82 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 W + + + R + + + DE Sbjct: 83 ----------SVAWLDDYFDIGEKYIRTKNRKVSYVFCGLRHNLDSIKSKARILVAWVDE 132 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTV 258 A K + E W+ N + +F P + +++ Sbjct: 133 AESVSSTAWKKLRPTVREEGSE-IWVTW-NPEKDGSATDKLFRKNPPKSSIIVEMNYVDN 190 Query: 259 EGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317 + E D G + + + + YI ++ + + Sbjct: 191 PWFPAVLEEERQEDLANLDYADYAWIWEGAYLENSDKQVLANKYIVQSFE-DNLWRKSER 249 Query: 318 LIMGCDIAGEGGDKTVVVF 336 L+ G D G D + ++ Sbjct: 250 LLFGADF-GFAKDPSTLIR 267 >gi|238912006|ref|ZP_04655843.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 439 Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 33/259 (12%), Positives = 66/259 (25%), Gaps = 26/259 (10%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSI----ICIANSETQLKNTLWAEVSKWLSMLPHRH 139 GRG KT A M +I +C L+ + EV + + Sbjct: 29 GGRGSAKTRTFALMTAVKAYQAAEANISGVILCAREYMNSLEESSMEEVKQAIR------ 82 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 W + + + R + + + DE Sbjct: 83 ----------SVAWLDDYFDIGEKYIRTKNRKVSYVFCGLRHNLDSIKSKARILVAWVDE 132 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTV 258 A K + E W+ N + +F P + +++ Sbjct: 133 AESVSSTAWKKLRPTVREEGSE-IWVTW-NPEKDGSATDKLFRKNPPKSSIIVEMNYVDN 190 Query: 259 EGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317 + E D G + + + + YI ++ + + Sbjct: 191 PWFPAVLEEERQEDLANLDYADYAWIWEGAYLENSDKQVLANKYIVQSFE-DNLWRKSER 249 Query: 318 LIMGCDIAGEGGDKTVVVF 336 L+ G D G D + ++ Sbjct: 250 LLFGADF-GFAKDPSTLIR 267 >gi|167907351|ref|ZP_02494556.1| hypothetical protein BpseN_34295 [Burkholderia pseudomallei NCTC 13177] Length = 490 Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 36/322 (11%), Positives = 77/322 (23%), Gaps = 46/322 (14%) Query: 43 KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102 L H P R+Q + ++ A R GK + M+ W Sbjct: 8 IELPHNWTPRRYQGRLWNYLIGGGKRAIDI-----------AHRRWGKDEV---MLHWTA 53 Query: 103 STRPGM--SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 + + TQ + +W V+ + + ++ Sbjct: 54 VAAHDRVANYWHMLPKATQARKAIWTAVN------------PHTGKRRIDEAFPEAIRKR 101 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220 + + T+ D + + + E + + + E Sbjct: 102 TRDQEMFIEFNNGSTWQVLGSDNYDNYVGSPPAGIVLSEWALCNPAVWAYLKPILDENGG 161 Query: 221 NRFWIMTSNTRRLNGWFYDI--FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRY----- 273 W T R + + + W + E + Y Sbjct: 162 ---WAAFITTPRGKNHAHKMLQMALANPKWFAEVSNVLKTGRFSLAELEEQRAEYRALYG 218 Query: 274 -GLDSDVARIEILGQFPQQEVNNFIPHNYI---EEAMSREAIDDLYAPLIMGCDIAGEGG 329 + E++ F + + + D P+I D+ Sbjct: 219 EEQGDAMFEQELMCSFEAAILGAYYGKEMAAAERDGRIGRVPHDPNLPVITVWDLGH--S 276 Query: 330 DKTVVVFRRGNI--IEHIFDWS 349 D T + F + + I I + Sbjct: 277 DDTSIWFAQVHWGEIRLIDHYR 298 >gi|313760829|gb|ADR79391.1| terminase [APSE phage Eptesicus fuscus/P5/IT/USA/2009] Length = 394 Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 27/205 (13%), Positives = 57/205 (27%), Gaps = 24/205 (11%) Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221 + + + + H + +EA + +++ + Sbjct: 14 IEGINDSIFKYGQLAR--NIASIKSKH--DFDVAWVEEAETVSEKSLDTLIPTIRKPGSE 69 Query: 222 RFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT-------VEGIDSGFHEGIISRYG 274 W N +G Y F P + Q V +D+ + + Sbjct: 70 -LWFSF-NPAEEDGAVYRRFVKPYKAIIDKQGYYEDDEVYVGKVSYLDNPWLPAELK--- 124 Query: 275 LDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID--DLYAPLIMGCDIAGEGGDKT 332 +D + E + + I ++E A ++ D A G D+ Sbjct: 125 --NDAQKGECDANY----EDALIQPEWVEAATDAHIKLGFKPSGIRVVTFDPADSGQDEK 178 Query: 333 VVVFRRGNIIEHIFDWSAKLIQETN 357 + R G +IE WS + + Sbjct: 179 ALSKRYGVLIEDCVSWSEGDVADAT 203 >gi|167647878|ref|YP_001685541.1| hypothetical protein Caul_3918 [Caulobacter sp. K31] gi|167350308|gb|ABZ73043.1| protein of unknown function DUF264 [Caulobacter sp. K31] Length = 439 Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 46/316 (14%), Positives = 82/316 (25%), Gaps = 41/316 (12%) Query: 37 PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96 PW W + H V+ +F GRG GKT A Sbjct: 33 PWTELAPWPVVQDGLKTW-----RVTEAHQKPPVDPWITWLF----LGGRGAGKTFAGAS 83 Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156 + +PG ++ + + ++ + S S+ + Q+ Sbjct: 84 WI--ANQAKPGRNLALVGPTFHDVREVMIEGPSGIKSLYLPGDRPKWQASRRRLE----- 136 Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGF 214 + A + DE P + Sbjct: 137 -------------FRNGAIAQAFSAEDPDALRGPQFHAAWADEFCAWPKPAETLAMLRFG 183 Query: 215 FTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYG 274 R + T R ++ P + + + + F + YG Sbjct: 184 LRLGTDPRLVVT--TTPRPIRALRNLIAEP-GAVQTRAPTSANADHLAPAFLSTLRGLYG 240 Query: 275 LDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD-IAGEGGDKT- 332 +A E+ G + E F + A R A + +++ D A GD Sbjct: 241 GT-RLAAQELDGLIVEGEGGLFRAEDL---ARCRGAPPAAFDRVVVAIDPPATATGDACG 296 Query: 333 -VVVFRRGNIIEHIFD 347 VV R G+ + D Sbjct: 297 IVVCGRFGDRAFVLAD 312 >gi|328544550|ref|YP_004304659.1| phage DNA Packaging Protein [polymorphum gilvum SL003B-26A1] gi|326414292|gb|ADZ71355.1| Phage DNA Packaging Protein [Polymorphum gilvum SL003B-26A1] Length = 413 Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 27/251 (10%), Positives = 59/251 (23%), Gaps = 31/251 (12%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRP------GMSIICIANSETQLKNTLWAEVSKWLSML 135 + GRG GKT A + I + + ++ + VS L++ Sbjct: 28 LMGGRGAGKTRAGAEWIRARALGHRWCEAAVAGRIALVGETFADVREVMIEGVSGLLAVH 87 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 P + Sbjct: 88 PRHERPAWNPSRRRLE------------------WPNGAVAQAFSAEDPEALRGPQFDIA 129 Query: 196 FNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253 ++DE + + + R + T R + ++P Sbjct: 130 WSDELAKWRHAEETFDMLQFGLRLGARPRQLVT--TTPRPVPLLKRLIDLP--GTALTHA 185 Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 TR + I + + R E+ G+ + + + +E + D Sbjct: 186 PTRANALFLAPGFLERIVARYQGTRLGRQELDGELIEDRPDALWRRDALEACRV-DRAPD 244 Query: 314 LYAPLIMGCDI 324 +++ D Sbjct: 245 ALVRIVVAVDP 255 >gi|161613293|ref|YP_001587258.1| hypothetical protein SPAB_01003 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161362657|gb|ABX66425.1| hypothetical protein SPAB_01003 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 443 Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 52/288 (18%), Positives = 81/288 (28%), Gaps = 38/288 (13%) Query: 81 AISAGRGIGKTTLNAWMMLWLI---STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 A+ GR GKT + + + RPGM I AE ++ + Sbjct: 27 AVRCGRRWGKTFMLSSAAVTYATAPFKRPGMDIELGGRVG-----IFTAEYRQYQEIYDK 81 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + LL+ ID D + + Sbjct: 82 LEEILLPLKKSFSRQEKRLLLKNGGKIDFWVTN-----------DNKLAGRGREYEIILI 130 Query: 198 DEASG------TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY 251 DEA+ +I KSI + T + +FY I + + + Sbjct: 131 DEAAFTKSPEMLREIWPKSIKPTLLTTKGRAYVFSTPDGVDEENFFYAICHDKNLGFIEH 190 Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311 T + + E D V R E L +F + E +++ Sbjct: 191 HAPTSSNPFVPPEELEK--EEANNDPRVFRQEFLAEFVDWSAASLFDIRKWFEGENQDQP 248 Query: 312 DDLYA---PLIMGCDIAGEGG---DKTVVVF-----RRGNIIEHIFDW 348 D + D A +GG D T VV+ R G I DW Sbjct: 249 VDYPEMCQAVFAVMDTAVKGGSEHDGTAVVYYAVDTRPGIQRLTILDW 296 >gi|200389400|ref|ZP_03216011.1| phage terminase, large subunit, pbsx family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199601845|gb|EDZ00391.1| phage terminase, large subunit, pbsx family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 439 Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 32/259 (12%), Positives = 66/259 (25%), Gaps = 26/259 (10%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSI----ICIANSETQLKNTLWAEVSKWLSMLPHRH 139 GRG KT A M +I +C L+ + EV + + Sbjct: 29 GGRGSAKTRTFALMTAVKAYQAAEANISGVILCAREYMNSLEESSMEEVKQAIR------ 82 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 W + + + R + + + DE Sbjct: 83 ----------SVAWLDDYFDIGEKYIRTKNRKVSYVFCGLRHNLDSIKSKARILVAWVDE 132 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTV 258 A K + E W+ N + +F P + +++ Sbjct: 133 AESVSSTAWKKLRPTVREEGSE-IWVTW-NPEKDGSATDKLFRKNPPKSSIIVEMNYVDN 190 Query: 259 EGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317 + E D G + + + + Y+ ++ + + Sbjct: 191 PWFPAVLEEERQEDLANLDYADYAWIWEGAYLENSDKQVLANKYVVQSFE-DNLWRKSER 249 Query: 318 LIMGCDIAGEGGDKTVVVF 336 L+ G D G D + ++ Sbjct: 250 LLFGADF-GFAKDPSTLIR 267 >gi|326425005|ref|YP_004286227.1| putative DNA packaging protein B [Pseudomonas phage phi15] gi|325048409|emb|CBZ42022.1| putative DNA packaging protein B [Pseudomonas phage phi15] Length = 586 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 43/400 (10%), Positives = 89/400 (22%), Gaps = 93/400 (23%) Query: 24 CVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS 83 +F F+ F W P+ P + Q + + + + + Sbjct: 13 LKGNFIAFL--FVLWAALNLPI-----PTKQQQDMAKKLAQGDDR----------RFILQ 55 Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 A RGIGK+ + ++W + P + I+ ++ ++ + + + + +LP H + Sbjct: 56 AFRGIGKSFITCAFVVWKLWNDPDLKIMIVSANKDRADANSVF-IKRIIDLLPFLHDLKP 114 Query: 144 -----------QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 P + G + E P Sbjct: 115 RQGQRDSSLSFDVGPARPDHSPSVKSVGVTGGMTGSRADILIADDVEVPGNSGTQSARDH 174 Query: 193 MAVFNDEASGT------------PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240 + E P W R Sbjct: 175 LGELVKEFDAILKPGGTIIYLGTPQTEMTLYRELEERGYTTTIWPARY--PRDQADLESY 232 Query: 241 FNIPLEDWKRYQI-------------DTRTVEGIDSGFHEGIISRYGLDSDVARIEIL-- 285 F + D YG + + Sbjct: 233 FQPKQNRSRLAPKMLEELEADPRLFGMPSDPVRFDEEDLRERELSYGKGGFALQFMLNPN 292 Query: 286 ----GQFPQQEVNNFIPHNYIEEAMSRE-AIDDL-------------------------- 314 ++P + + + + A + + + Sbjct: 293 LSDIAKYPLKLRDFIVAALDMATAPTTWQWLPNPRNETQGLPVVGLKGDRFHRYEQCSSN 352 Query: 315 ---YAPLIMGCDIAGEGGDKTVVVF-RRGNIIEHIFDWSA 350 Y I+ D +G G D+T + N + DW Sbjct: 353 TASYEGKILVIDPSGRGKDETGYAVLYQLNGYIFLMDWGG 392 >gi|300022629|ref|YP_003755240.1| hypothetical protein Hden_1105 [Hyphomicrobium denitrificans ATCC 51888] gi|299524450|gb|ADJ22919.1| protein of unknown function DUF264 [Hyphomicrobium denitrificans ATCC 51888] Length = 500 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 40/263 (15%), Positives = 70/263 (26%), Gaps = 15/263 (5%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPG--MSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 + GRG GKT A + L S N+ + ++ L Sbjct: 102 LLGGRGSGKTRAGAEWIRGLACGEEPGPRSAAGSRNASRRAPTKESPRIALVGKTLADVR 161 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 ++ S + A + D A + DE Sbjct: 162 NVMIEGQSGLLAVHPARERPVFEPSKRRLIWPNGAVAELFSADEAEALRGPQFTAAWCDE 221 Query: 200 ASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257 + + + + R + T R I E + T Sbjct: 222 LAKWRNAEKAWDMLQFALRLGDAPRACVT--TTPRATKLL--KSIIADEATVTVNLATAD 277 Query: 258 VE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA 316 + F + RY S + R E+LG+ + + ++IEEA R Sbjct: 278 NALNLAPTFLAEMTRRYAG-SAIGRQELLGEIVEDASDGLWRRHWIEEA--RVDAAPEMQ 334 Query: 317 PLIMGCDI---AGEGGDKTVVVF 336 +++ D A D +V Sbjct: 335 RVVVAVDPPVTATAASDACGIVV 357 >gi|91976441|ref|YP_569100.1| hypothetical protein RPD_1964 [Rhodopseudomonas palustris BisB5] gi|91682897|gb|ABE39199.1| protein of unknown function DUF264 [Rhodopseudomonas palustris BisB5] Length = 386 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 32/249 (12%), Positives = 63/249 (25%), Gaps = 32/249 (12%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSMLPH 137 GRG GKT A + P I + +E ++ + VS L++ P Sbjct: 3 GGRGAGKTRGGAEWVRCQALGLPPFASVPAARIALVGETEHDVREVMIEGVSGLLAVHPP 62 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 D ++ Sbjct: 63 DQRPNWLPSRKRLE------------------WSNGAVAQAFSADDPESLRGPQFSCAWS 104 Query: 198 DEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255 DE + + + R + + T R + + P Sbjct: 105 DEMAKWRYAEAAFDMLQFGLRLGAQPRQ--LITTTPRPSTLLKRLLGDPS-AVTTRAPTR 161 Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY 315 + F + +++RY + R E+ G+ ++ + IE +A Sbjct: 162 ANALNLAPTFLQAVMARYAGT-RLGRQELDGELIEERPDALWSRALIETCRVADAPPLQ- 219 Query: 316 APLIMGCDI 324 L++ D Sbjct: 220 -RLVVAVDP 227 >gi|219723105|ref|YP_002474527.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr] gi|219694031|gb|ACL34563.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr] Length = 450 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 43/336 (12%), Positives = 92/336 (27%), Gaps = 55/336 (16%) Query: 9 QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68 Q Q ++ + + S NF Q + ++++ + Sbjct: 15 QYKNQFGVDISQFVKPINSLINFAHF------------EEKHLTVKQNKVIKSIQKNNEK 62 Query: 69 NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMSIICIANSETQLKNT 123 K +S G GKT L ++ + + + I NS+ ++ Sbjct: 63 ----------KIILSGGIASGKTYLACYLFIKSLIANKKLYSSDTNNFIIGNSQRSVEVN 112 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 + + K +L + + S Y ++ Sbjct: 113 VLGQFEKLCKLLNISYIPRHTNNSYIMIDSLRIN-----------------LYGGDKASD 155 Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243 F ++ +F +EA+ + +L I +N +F + Sbjct: 156 FERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCAQETIIFDTNPDHPEHYFKTDYID 213 Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303 + + Y+ T + F + Y +LG++ + F N + Sbjct: 214 NVATFNTYKFTTYDNVLLSKEFIKTQEKLYKDIPAYKARVLLGEWIASTDSIFTQINITQ 273 Query: 304 EAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVFRR 338 + + I D A GGD T + Sbjct: 274 DYVFTSP--------IAYLDPAFSIGGDNTALCVMD 301 >gi|168236450|ref|ZP_02661508.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194735659|ref|YP_002113600.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194711161|gb|ACF90382.1| phage terminase, large subunit, pbsx family [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197290245|gb|EDY29601.1| phage terminase, large subunit, pbsx family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 439 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 32/259 (12%), Positives = 66/259 (25%), Gaps = 26/259 (10%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSI----ICIANSETQLKNTLWAEVSKWLSMLPHRH 139 GRG KT A M +I +C L+ + EV + + Sbjct: 29 GGRGSAKTRTFALMTAVKAYQAAEANISGVILCAREYMNSLEESSMEEVKQAIR------ 82 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 W + + + R + + + DE Sbjct: 83 ----------SVAWLDDYFDIGEKYIRTKNRKVSYVFCGLRHNLDSIKSKARILVAWVDE 132 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTV 258 A K + E W+ N + +F P + +++ Sbjct: 133 AESVSSTAWKKLRPTVREEGSE-IWVTW-NPEKDGSATDKLFRKNPPKSSIIVEMNYVDN 190 Query: 259 EGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317 + E D G + + + + Y+ ++ + + Sbjct: 191 PWFPAVLEEERQEDLANLDYADYAWIWEGAYLENSDKQVLANKYVVQSFE-DNLWRKSER 249 Query: 318 LIMGCDIAGEGGDKTVVVF 336 L+ G D G D + ++ Sbjct: 250 LLFGADF-GFAKDPSTLIR 267 >gi|119953680|ref|YP_950600.1| putative large terminase subunit [Staphylococcus phage CNPH82] gi|112361306|gb|ABI15678.1| putative large terminase subunit [Staphylococcus phage CNPH82] gi|329736010|gb|EGG72285.1| phage terminase, large subunit, PBSX family [Staphylococcus epidermidis VCU045] Length = 421 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 30/275 (10%), Positives = 77/275 (28%), Gaps = 25/275 (9%) Query: 72 NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131 + GRG GK++ + ++ + R M+ + + ++ L +++ ++ Sbjct: 22 TKDREKLNIVAKGGRGSGKSSDISIIIT-QLIMRYPMNAVVVRKTDNTLATSVFEQIKWA 80 Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191 + H F+++ + + + I R + Sbjct: 81 IEEQKVSHLFKVKVSPM------------EITYVPRGNRIIFRGAQNPERLKSLKDSRFP 128 Query: 192 GMAVFNDE-ASGTPDIINKSILGFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--I 243 ++ +E A + +I + + N R W + Sbjct: 129 FSIMWIEELAEFKTEDEVTTITNSMLRGELDDGLFYKFFFSYNPPKRKQSWVNKKYETSF 188 Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303 ++ + I F + S + R E +G+ +P N ++ Sbjct: 189 QPDNTFVHHSTYLDNPFISKQFIQEAESAKERNEQRYRWEYMGEAIGSG---VVPFNNLQ 245 Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338 + + + + D G D V Sbjct: 246 IEKIPDDLYKTFDNIRNAVDF-GYATDPLAFVRWH 279 >gi|226305996|ref|YP_002765956.1| hypothetical protein RER_25090 [Rhodococcus erythropolis PR4] gi|226185113|dbj|BAH33217.1| hypothetical protein RER_25090 [Rhodococcus erythropolis PR4] Length = 402 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 28/282 (9%), Positives = 69/282 (24%), Gaps = 39/282 (13%) Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124 H + + FK + GR GKTT M PG + A + Q ++ + Sbjct: 5 HQSQRKIAESSSRFKV-LRCGRRFGKTTYAVEEMKGACLFEPGP-VAYFATTRDQARDIV 62 Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184 WAE+ + +++ ++ L + + + + + Sbjct: 63 WAELLE--NVIGTTNYVSHNEQRLEVTLRRPDGSLNRIRLFGW--------------ENI 106 Query: 185 VGPHNTHGMAVFNDEASGT---PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241 V DE + I + + + Sbjct: 107 ETARGKKYSLVVLDELDSMRAFEKQWREIIRATLADYRGRAL--FMGTPKGYKSLYRLEK 164 Query: 242 NIPLE-DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 +++ + + + + + + E+L ++ + Sbjct: 165 LSKTNANYEVFHFTSFDNPFLSVEELDEMRGEMTVTQ--YAQEMLAEYHKM-EGLIY--E 219 Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGE----------GGDKT 332 +A+ + D G D + Sbjct: 220 EFNRDQHIKALPFTPERWALSIDFGYNHPFAAGIFAIGSDNS 261 >gi|163759067|ref|ZP_02166153.1| Phage DNA Packaging Protein [Hoeflea phototrophica DFL-43] gi|162283471|gb|EDQ33756.1| Phage DNA Packaging Protein [Hoeflea phototrophica DFL-43] Length = 492 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 70/280 (25%), Gaps = 42/280 (15%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM---- 108 WQL + + + + GRG GKT A + L S Sbjct: 89 DWQL-----IARPEQLPPDGDWRSW---LLMGGRGSGKTRAGAEWVHGLASGAVPGLGRQ 140 Query: 109 -SIICIANSETQLKNTLWAEVSKWLSMLPH-RHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 I +A + + + VS + + R FE L Sbjct: 141 GRIALVAETFGDAREVMIDGVSGIMGVARDQRPAFEATRRRL------------------ 182 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFW 224 + + + DE + R Sbjct: 183 --VWPSGAVAQMFSSEDPESLRGPQFDLAWCDELGKWRHARETWDMLQFALRLGQHPRQ- 239 Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 + + T R + R + + +GF + + +RYG + R E+ Sbjct: 240 -LITTTPRATPLMLALVKDIGTRVTRIR-TEDNAGNLAAGFLDTVRARYGGT-RLGRQEL 296 Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI 324 G+ + +E + R +++ D Sbjct: 297 DGELIADREDGLWRREQLEALVVR--KPGPLGRIVVAVDP 334 >gi|219723512|ref|YP_002476767.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr] gi|219694406|gb|ACL34930.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr] Length = 396 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 78/235 (33%), Gaps = 24/235 (10%) Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 + + ++ ++ N IF + RG GKT A + L + G + I + Sbjct: 3 LRRLPIYVNAYKEKPNAEIF--IYYSSRGTGKTYDIATVNLERKFSADGGDTLAIRKKKN 60 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 + ++ E+ + LS R +F + + S+ K + E Sbjct: 61 KTTQSIHKEILELLSRYNLRKFFNISKAKIESK---------SLIFGKKRAFVF-----E 106 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 DT H ++ +EA+ + ++ E + SN + W Y Sbjct: 107 GGHDTRDLKSYAHFKDLWLEEANQFSSDDIEMLIPTMREQGGRIYMS--SNPVPKSHWLY 164 Query: 239 DIFNIPLEDW--KRYQIDTRTVEGID----SGFHEGIISRYGLDSDVARIEILGQ 287 + ++ + R ++ + E Y + RIE+LG+ Sbjct: 165 KRYLANQDNPAVCIIKSTYRDNPFLNGGDVEAWLEKQKLAYHGNDIGFRIEVLGE 219 >gi|293368016|ref|ZP_06614649.1| large terminase subunit [Staphylococcus epidermidis M23864:W2(grey)] gi|291317838|gb|EFE58251.1| large terminase subunit [Staphylococcus epidermidis M23864:W2(grey)] Length = 421 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 30/275 (10%), Positives = 77/275 (28%), Gaps = 25/275 (9%) Query: 72 NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131 + GRG GK++ + ++ + R M+ + + ++ L +++ ++ Sbjct: 22 TKDRKKLNVVAKGGRGSGKSSDISIIIT-QLIMRYPMNAVVVRKTDNTLATSVFEQIKWA 80 Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191 + H F+++ + + + I R + Sbjct: 81 IEEQKVSHLFKVKVSPM------------EITYVPRGNRIIFRGAQNPERLKSLKDSRFP 128 Query: 192 GMAVFNDE-ASGTPDIINKSILGFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--I 243 ++ +E A + +I + + N R W + Sbjct: 129 FSIMWIEELAEFKTEDEVTTITNSMLRGELDDGLFYKFFFSYNPPKRKQSWVNKKYETSF 188 Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303 ++ + I F + S + R E +G+ +P N ++ Sbjct: 189 QPDNTFVHHSTYLDNPFISKQFIQEAESTKERNELRYRWEYMGEAIGSG---VVPFNNLQ 245 Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338 + + + + D G D V Sbjct: 246 IEKIPDELYKSFDNIRNAVDF-GYATDPLAFVRWH 279 >gi|254293613|ref|YP_003059636.1| hypothetical protein Hbal_1247 [Hirschia baltica ATCC 49814] gi|254042144|gb|ACT58939.1| protein of unknown function DUF264 [Hirschia baltica ATCC 49814] Length = 397 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 26/244 (10%), Positives = 57/244 (23%), Gaps = 25/244 (10%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 GRG GKT A + I + + + + ++ + S ++ P Sbjct: 20 MGGRGAGKTRAGAEWIRSQIWEHGKQRVALVGPTLSDVREVMIEGPSGLRNIGPAEERPI 79 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 + A + DE Sbjct: 80 YSPSRRRLE------------------WPNGAEGFVFSAEDPDSLRGPQFDAAWGDEIGA 121 Query: 203 TP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 ++ + R T R + L++ + + T Sbjct: 122 WHRGQTCWDMLMFGLRLGDNPRICAT--TTPRPTPLIRKLV--KLDNIEITRASTLENAH 177 Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIM 320 + + + + R EI G+ + IE + A + +++ Sbjct: 178 NLAPSFLEAVQANYGGTRLGRQEIDGELIDDPKGALWLRSQIETNRTINAK-HEFQRIVV 236 Query: 321 GCDI 324 D Sbjct: 237 AIDP 240 >gi|119024600|gb|AAP34063.2| gene 19 [Enterobacteria phage T7] Length = 586 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 45/386 (11%), Positives = 97/386 (25%), Gaps = 86/386 (22%) Query: 19 LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78 L+ A+ F F+ F W P+ P + Q++ + + + Sbjct: 10 LVVAQLKGDFVAFL--FVLWKALNLPV-----PTKCQIDMAKVLANGDNK---------- 52 Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 K + A RGIGK+ + ++W + P + I+ ++ S+ + + + +LP Sbjct: 53 KFILQAFRGIGKSFITCAFVVWSLWRDPQLKILIVSASKERADANSIF-IKNIIDLLPFL 111 Query: 139 HWFEMQSLSLHPSGWYAEL-----------LEQSMGIDSKHYTITCRTYSEERPDTFVGP 187 + + + G + E P Sbjct: 112 SELKPRPGQRDSVISFDVGPANPDHSPSVKSVGITGQLTGSRADIIIADDVEIPSBSATM 171 Query: 188 HNTHGMAVFNDEASGT-------------PDIINKSILGFFTE--LNPNRFWIMTSNTRR 232 + E + ++ + W R Sbjct: 172 GAREKLWTLVQEFAAXLKPLPSSRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRTR 231 Query: 233 LNGWFYDIFNIP------LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-- 284 +Y P E+ + D YG + + Sbjct: 232 EENLYYSQRLAPMLRAEYDENPEALAGTPTDPVRFDRDDLRERELEYGKAGFTLQFMLNP 291 Query: 285 ---LGQ-FPQQEVNNFIPHNYIEEA-MSREAIDD-------------------------- 313 + +P + + + +E+A M + + + Sbjct: 292 NLSDAEKYPLRLRDAIVAALDLEKAPMHYQWLPNRQNIIEDLPNVGLKGDDLHTYHDCSN 351 Query: 314 ---LYAPLIMGCDIAGEGGDKTVVVF 336 Y I+ D +G G D+T Sbjct: 352 NLGQYQQKILVIDPSGRGKDETGYAV 377 >gi|218529683|ref|YP_002420499.1| hypothetical protein Mchl_1708 [Methylobacterium chloromethanicum CM4] gi|218521986|gb|ACK82571.1| protein of unknown function DUF264 [Methylobacterium chloromethanicum CM4] Length = 421 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 40/290 (13%), Positives = 79/290 (27%), Gaps = 35/290 (12%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTR------PGMS 109 +EA +H + P + A+ GRG GKT A + L P Sbjct: 10 RLLEADWLHLARHDQLPPPGNWTTWAVIGGRGSGKTRTGAEWVRGLAYGDPVFSPEPVER 69 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I + + +++ + S L++ +L + + Sbjct: 70 IALVGETFADVRDVMIEGPSGLLALPRLGG-----ALPVW------------QPSRRRVV 112 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMT 227 + AV++DE + + I R + Sbjct: 113 FGNGAVALAFSAEEPDSLRGPQFGAVWSDEVAKWREAEATYDMIQFGLRLGTHPRGLVT- 171 Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287 T R + P + + F E ++ RY + R E+ G+ Sbjct: 172 -TTPRPVPLIRRLLADPRT-VVTRSRTADNAQNLAPSFLEEVVGRYAGT-RLGRQELDGE 228 Query: 288 FPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVV 334 + + + IE +R + + D + G D + Sbjct: 229 LIEDRPDALWTRDSIER--TRVFEAPPLQRIAVAIDPPASSRVGADACGI 276 >gi|62327097|ref|YP_223885.1| putative large subunit terminase [Lactobacillus phage phiJL-1] gi|37930114|gb|AAP74512.1| putative large subunit terminase [Lactobacillus phage phiJL-1] Length = 440 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 36/288 (12%), Positives = 87/288 (30%), Gaps = 27/288 (9%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 RG GK+ A ++ I P ++ + T K++ +A + K + Sbjct: 38 LVYKGSRGSGKSYATAAKVIIDIMMYPYVNWLVTRQYATTQKDSTFATIRKVAHSMGVLD 97 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 F+ L + G+D + + + + +E Sbjct: 98 LFKFTKSPLEITYKQTGQKVFFRGMDDPLKITSIQPVTGFICRR------------WCEE 145 Query: 200 A-SGTPDIINKSILGFFTELNPNRFW---IMTSNTRRLNGWFYDIF---NIPLEDWKRYQ 252 A ++ P + ++T N W F + Sbjct: 146 AYELKSLDAFDTVEESMRGELPPGGFYQTVITFNPWSDRHWLKHEFFDDKTKRNHSRAIT 205 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + + +++ + + + + + AR+ +LG++ + + S + + Sbjct: 206 TTYKDNDHLNADYVDSLKEMLVRNPNRARVAVLGEW-GIAEGLVFDGLFEQRDFSYD--E 262 Query: 313 DLYAPLIMGCDIAGEGGDKTV---VVFRRGNIIEHI-FDWSAKLIQET 356 P +G D G D T + + N I +I ++ + + Sbjct: 263 IANLPKSVGLDF-GFKHDPTAGEFIAVDQDNRIVYIYDEFYKQHLLTN 309 >gi|237743779|ref|ZP_04574260.1| phage terminase [Fusobacterium sp. 7_1] gi|229432810|gb|EEO43022.1| phage terminase [Fusobacterium sp. 7_1] Length = 426 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 30/245 (12%), Positives = 67/245 (27%), Gaps = 36/245 (14%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 I G G K+ A ++ I+ + +K + ++ + +S F Sbjct: 25 IVGGYGSSKSYHTALKLILKAIQ-EKRRILVVRAVYRTIKESCFSLLKGIISNYNLNGLF 83 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + + + I + P+ + ++ +E Sbjct: 84 SYT------------VNPLHIRGRNGSEFIF---MGLDDPEKLKSI--DNVDMIWIEECP 126 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL---------------E 246 + G L + +T+N +N W Y+ F + Sbjct: 127 EISYNAFNELNGRLRALEKDLHIFLTNNPVSVNNWTYERFIKKAGIDEEELYQNRIMTTD 186 Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306 D + + + + + + D + RI G+F F I++A Sbjct: 187 DTYYHHSVVEDNAFVTDEYIKQLKNFETYDIERYRIAYQGRFGIVGERVF---TNIQKAS 243 Query: 307 SREAI 311 E Sbjct: 244 DTEVQ 248 >gi|304393573|ref|ZP_07375501.1| large terminase [Ahrensia sp. R2A130] gi|303294580|gb|EFL88952.1| large terminase [Ahrensia sp. R2A130] Length = 503 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 28/265 (10%), Positives = 61/265 (23%), Gaps = 24/265 (9%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + GRG GKT A + + + L+ ++ Sbjct: 119 LMGGRGSGKTRTGAEWV----------KGMVLGQDWCTLRAV--GSIALVGETYADIREV 166 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + S + + + + + G + DE + Sbjct: 167 MVDGESGLLAIHASNERPIFVSSRRRLEWQNGAVAQLFSSEDPDGLRGPQFEIAWCDELA 226 Query: 202 GT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 + ++ N R + T Sbjct: 227 KWKNAEATWDTLQLGLRLGNCPRQVV---TTTPKAVPLLKRIINDQATVISRMRTVENEA 283 Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319 + F + + YG S + R E+ G+ + + ++ R +I Sbjct: 284 HLAPNFLDRVTKLYGGTS-LGRQELDGELIEDREDGLWSRPMLQRCRVR--KHPPLQRII 340 Query: 320 MGCDIAGEG---GDKTVV-VFRRGN 340 + D G D + +G Sbjct: 341 VAVDPPVTGHAHSDACGLVAVGQGE 365 >gi|170023468|ref|YP_001719973.1| hypothetical protein YPK_1222 [Yersinia pseudotuberculosis YPIII] gi|169750002|gb|ACA67520.1| conserved hypothetical protein [Yersinia pseudotuberculosis YPIII] Length = 534 Score = 70.7 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 52/386 (13%), Positives = 105/386 (27%), Gaps = 60/386 (15%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVM-----RFFPWGIK------------GKP 44 P + + L + E + + + F WG+ P Sbjct: 12 PDYTQVFEWRMERLQRIRQQPELLPAMRAFYRNNPAQFIIDWGMTTDPRNLDYGLPVSIP 71 Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 F + W M+ + + S R +G + ++ + L Sbjct: 72 FLLFPKQEEWVHWIMDRRRNMENGLTDKS------------REMGLSWVSVGLSSTLCLF 119 Query: 105 RPGMSIICIANSETQLKNT-----LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159 M I + E + +T L+ + K++ LP + P Sbjct: 120 NKEMVIGFGSRKEEYVDSTGDPKALFWKARKFIETLPAEFRGSWDNKKHAPYMRIEFPDS 179 Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219 S+ + F DE++ + T Sbjct: 180 GSII---------------KGEAGDNIGRGDRTTMYFVDESAFLQRPLLIDAALSQTTRC 224 Query: 220 PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279 I S+ +N F + + R+ D +++ + + + Sbjct: 225 R----IDLSSVNGMNNPFAQKRHGGK--IPVFTFHWRSDPRKDDAWYKKECEKI-DNPVI 277 Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAM--SREAIDDLYAPLIMGCDIAGEGGDKTVVVFR 337 E+ + IP +++ A+ + I D+A EG D R Sbjct: 278 VAQELDLNYNAAAEGILIPSEWVQAAIGAHTKLGITPSGARIGALDVADEGIDLNAFSSR 337 Query: 338 RGNIIEHIFDWSAK--LIQETNQEGC 361 G +++ + WS K I T Q+ Sbjct: 338 TGVLLDRLKAWSGKGSDIYATTQDAM 363 >gi|56560881|ref|YP_161301.1| hypothetical protein BGP016 [Borrelia garinii PBi] gi|52696522|gb|AAU85866.1| hypothetical protein BGP016 [Borrelia garinii PBi] Length = 396 Score = 70.4 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 79/235 (33%), Gaps = 24/235 (10%) Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 + + ++ ++ N IF + RG GKT A + L + G + I + Sbjct: 3 LRRLPIYVNAYKEKPNAEIF--IYYSSRGTGKTYDIATVNLERKFSVDGGDTLAIRKKKN 60 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 + ++ E+ + LS+ R +F + + S+ K + E Sbjct: 61 KTTQSIHKEILELLSIYGLRKFFNISKAKIESK---------SLIFGKKRAFVF-----E 106 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 DT H ++ +EA+ + ++ E + SN + W Y Sbjct: 107 GGHDTRDLKSYAHFKDLWLEEANQFSSDDIEMLIPTMREQGGRIYMS--SNPVPKSHWLY 164 Query: 239 DIFNIPLEDW--KRYQIDTRTVEGID----SGFHEGIISRYGLDSDVARIEILGQ 287 + ++ + R ++ + E Y + RIE+LG+ Sbjct: 165 KRYLANQDNPAVCIIKSTYRDNPFLNGGDVEAWLEKQKLAYHGNDIGFRIEVLGE 219 >gi|219872329|ref|YP_002476730.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr] gi|219694371|gb|ACL34896.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr] Length = 396 Score = 70.4 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 77/235 (32%), Gaps = 24/235 (10%) Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 + + + ++ N IF + RG GKT A + L G + I + Sbjct: 3 LRRLPTYVNAYKEKPNAEIF--IYYSSRGTGKTYDIATVNLERKFNPDGGDTLAIRKKKN 60 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 + ++ E+ + L++ R +F + + S+ K + E Sbjct: 61 KTTQSIHKEICELLNIYNLRKFFNISKSKIESK---------SLIFGKKRAFVF-----E 106 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 DT H ++ +EA+ + ++ E + SN + W Y Sbjct: 107 GGHDTRDLKSYAHFKDLWLEEANQFTSEDIEMLIPTMREQGGRVYMS--SNPVPKSHWLY 164 Query: 239 DIFNIPLEDW--KRYQIDTRTVEGID----SGFHEGIISRYGLDSDVARIEILGQ 287 + ++ + R ++ + E Y + RIE+LG+ Sbjct: 165 KRYLSNEDNPAVCIIKSTYRDNPFLNGGNVQAWLEKQKLAYHGNDIGFRIEVLGE 219 >gi|92116961|ref|YP_576690.1| hypothetical protein Nham_1408 [Nitrobacter hamburgensis X14] gi|91799855|gb|ABE62230.1| protein of unknown function DUF264 [Nitrobacter hamburgensis X14] Length = 422 Score = 70.4 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 31/275 (11%), Positives = 62/275 (22%), Gaps = 35/275 (12%) Query: 61 AVDVHCHSNVNNSNPTIFKCAI---SAGRGIGKTTLNAWMMLWLISTRPG------MSII 111 + H H P I GRG GKT A + I Sbjct: 14 DIFAHPHQRPPELAPNGAPWLIWLMVGGRGAGKTRAGAEWIRAQALGLAPFAVEAVSRIA 73 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + +E + + VS L++ Sbjct: 74 LVGETEHDAREVMIEGVSGLLAVHAAHERPAWSPSRKRLE------------------WS 115 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSN 229 D ++DE + + + + R + + Sbjct: 116 NGAVAQAFSADDPESLRGPQFGCAWSDEMAKWRYAEAAFDMLQFGLRLGSQPRQ--LITT 173 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 T R + P + T+ + + + + R E+ G+ Sbjct: 174 TPRPTALLKRLMADPAS--VVSRAPTQANAFNLAPTFLQGVMARYAGTRLGRQELDGEII 231 Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI 324 + + +E EA +++ D Sbjct: 232 EDRPDALWSRALLERCRVHEAPPLQ--RIVVAVDP 264 >gi|306818204|ref|ZP_07451935.1| possible phage terminase protein [Mobiluncus mulieris ATCC 35239] gi|304649168|gb|EFM46462.1| possible phage terminase protein [Mobiluncus mulieris ATCC 35239] Length = 470 Score = 70.4 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 47/336 (13%), Positives = 81/336 (24%), Gaps = 59/336 (17%) Query: 39 GIKGKPLEHFSQP-HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97 G P WQ E +N + ++ R GKTTL + Sbjct: 18 GQVELVARFLQTPLMPWQKLVAEVACERQAANPER--ARYQRVIVTVPRQSGKTTLIKAL 75 Query: 98 MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 M + PG + A + W E++K L +G + Sbjct: 76 MAAVAQANPGCKVYYTAQTRKDAVEK-WGELAKQLRK-------------EMGTGPDGKP 121 Query: 158 LEQSMGIDSKHYTITCRTYSEERP--DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 + + + T S +P T G H DEA ++ Sbjct: 122 RVKVLEGTGNEKIVFQGTESVIQPFAPTPGGLHGATSPLAIVDEAWAFDQAQGDDLMAAL 181 Query: 216 ----------------TELNPNRFWI---------MTSNTRRLNGWFYDIFNIPLEDWKR 250 T + W+ TS+ +F + D Sbjct: 182 NPVGLTIPHSQVWIISTAGDTRSQWLKSLVDDGRAATSDPGATTAFFEWSADEETADADL 241 Query: 251 YQIDT-RTVE--GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307 G + + R L +P + I + ++ Sbjct: 242 RGDAALSFHPALGYTQELWKLKALGKDEKDHLYRRAYLNLWPTNAQTSIIDLETWD-GLA 300 Query: 308 REAIDDLYAPLIMGCDIA--GEGG--------DKTV 333 E + + D+A G D +V Sbjct: 301 TEISETPTGAT-IAFDVADGRTGATIYAAWQQDNSV 335 >gi|66395973|ref|YP_240307.1| ORF008 [Staphylococcus phage ROSA] gi|62636393|gb|AAX91504.1| ORF008 [Staphylococcus phage ROSA] Length = 421 Score = 70.4 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 32/275 (11%), Positives = 77/275 (28%), Gaps = 25/275 (9%) Query: 72 NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131 + + GRG GK++ + ++ + R M+ + I ++ L +++ ++ Sbjct: 22 TKDKDLLNIIAKGGRGSGKSSDISIIIT-QLIMRYPMNAVVIRKTDNTLATSVFEQIKWA 80 Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191 + H F+++ + + + I R + Sbjct: 81 IEEQKVTHLFKVKVSPM------------EITYIPRGNRIIFRGAQNPERLKSLKDSRFP 128 Query: 192 GMAVFNDE-ASGTPDIINKSILGFF----TELNPNRFWIMTSNTR-RLNGWFYDIFN--I 243 + +E A + +I + + + N R W + Sbjct: 129 FSIAWIEELAEFKTEDEVTTITNSLLRGELDEGLFYKFFFSYNPPKRKQSWVNKKYESSF 188 Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303 ++ + I F + S + R E +G+ +P N + Sbjct: 189 QADNTFVHHSTYLNNPFISKQFIQEAESAKKRNEQRYRWEYMGEAIGSG---VVPFNNLR 245 Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338 + D + + D G D V Sbjct: 246 IEEIPQGQYDTFDNIRNAVDF-GYATDPLAFVRWH 279 >gi|307270085|ref|ZP_07551405.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis TX4248] gi|306513580|gb|EFM82192.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis TX4248] Length = 425 Score = 70.4 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 33/267 (12%), Positives = 82/267 (30%), Gaps = 11/267 (4%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 N I GRG GK++ A ++ + R ++ + I + L+ +++ ++ + Sbjct: 25 NSDILNIVCKGGRGSGKSSDIA-HIITQLLMRYAVNAVGIRYVDNTLEQSIYEQMKWAIE 83 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 H F+ L + G + + + ++ Sbjct: 84 QQGVTHLFKFNKSPLRITYIPRGNYMIFRGAQNPERIKSLKDSRFPFAIGWIEELGEFKT 143 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN--IPLEDWKRY 251 DE + + + + G + +F+ + +R W + ++ + Sbjct: 144 ---EDEVTTITNSL---LRGELGDGLFYKFFFSYNPPKRRQSWVNKKYESSFQPDNTFVH 197 Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311 + I F + + + + AR E G+ + +E+ + + Sbjct: 198 HSTYKDNPFISREFLKEVEAARDRNPLRARWEYDGE-AIGSGVVPFSNLKVEKGCITDEM 256 Query: 312 DDLYAPLIMGCDIAGEGGDKTVVVFRR 338 + + G D G D V Sbjct: 257 VANFDNIRNGLDF-GYATDPLAFVRWH 282 >gi|260596962|ref|YP_003209533.1| hypothetical protein CTU_11700 [Cronobacter turicensis z3032] gi|260216139|emb|CBA28942.1| hypothetical protein CTU_11700 [Cronobacter turicensis z3032] Length = 409 Score = 70.4 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 36/267 (13%), Positives = 71/267 (26%), Gaps = 27/267 (10%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLIST----RPGMSIICIANSETQLKNTLWAEVSKW 131 ++C+ GRG KT A M I+C L+ + EV + Sbjct: 22 KRYRCS-HGGRGSAKTRTFALMTAVKAYQAANNGESGVILCAREFMNSLEESSMEEVKQA 80 Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191 + +P + + + +D + + C R + Sbjct: 81 IRAVP------------WLAANFDIGEKYIRTLDKRVSYVFC----GLRHNLDSIKSKAR 124 Query: 192 GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKR 250 + + DEA ++ + + E + W+ N R + P +D Sbjct: 125 ILLCWVDEAETVSEVAWQKLDPTVREDDSE-IWVTW-NPERDGSATDRRYRKEPGDDCIT 182 Query: 251 YQIDTRTVEGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309 +++ D G + + + Y A + Sbjct: 183 VEMNYIDNPWFPRVLEGVRRKDQKRLDPATYAWVWEGAYLENSNKQVLAGKY-RVAEFSD 241 Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVF 336 + L G D G D +V Sbjct: 242 ELWKEAERLFFGADF-GFAKDPNTLVR 267 >gi|323137496|ref|ZP_08072573.1| hypothetical protein Met49242DRAFT_1961 [Methylocystis sp. ATCC 49242] gi|322397122|gb|EFX99646.1| hypothetical protein Met49242DRAFT_1961 [Methylocystis sp. ATCC 49242] Length = 323 Score = 70.4 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 47/333 (14%), Positives = 91/333 (27%), Gaps = 61/333 (18%) Query: 18 MLMHAECVLSFKNFVMRFF-----PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNN 72 ML E + F F PW + H + +F +V + Sbjct: 1 MLNIVEAMDDPALFGRWFPGASWDPWRVV-LKAAHGLPMTEAEADFFRSVAD-----RDP 54 Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS---------IICIANSETQLKNT 123 + + GR GK ++ + ++ W + G +C+A + Q + Sbjct: 55 PSRRARELWAVCGRRAGKDSIASAIVTWSAAMFDGADRLRPGERALCLCLACDKDQARIV 114 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 L + + + P + + + + + Sbjct: 115 LSYVRAYFAELEP-------------LRAMVTRETKDGLELSNGVDIYVG-------VND 154 Query: 184 FVGPHNTHGMAVFNDEASGTPDII--------NKSILGFFTELNPNRFWIMTSNTRRLNG 235 F + DE + D +++ L P I S+ R G Sbjct: 155 FRAVRGRTILCAVLDEIAYWRDENSASPDLELYRALKPGMATL-PEAMLIGISSPYRRAG 213 Query: 236 WFYDIFNIPLED----WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291 + +D + D AR E L +F + Sbjct: 214 LLHAKHRQAYGRDGDTLVIRAPSAVMNPTLDQAEIDQA---MAEDPAAARAEWLAEF-RD 269 Query: 292 EVNNFIPHNYIEEAMSREAIDDL----YAPLIM 320 +++ F+ + IE A+ + YAP IM Sbjct: 270 DISGFLGLDLIEAAVDPTIVTRPPRGCYAPWIM 302 >gi|154247629|ref|YP_001418587.1| hypothetical protein Xaut_3704 [Xanthobacter autotrophicus Py2] gi|154161714|gb|ABS68930.1| protein of unknown function DUF264 [Xanthobacter autotrophicus Py2] Length = 446 Score = 70.4 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 32/269 (11%), Positives = 64/269 (23%), Gaps = 32/269 (11%) Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQL 120 N I AGRG GKT A + ++ I +A + Sbjct: 46 RPNQLPPPGDWLTWLILAGRGYGKTRTGAEWVRSVVCGATPLSRGILGRIALVAETAADA 105 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 ++ + S LS+ P + + + Sbjct: 106 RDVMVEGESGILSVHPKAFRPLYEPSKRRLT------------------WPNGAVATLYN 147 Query: 181 PDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 + DE + + + R + T R Sbjct: 148 AVEPDQLRGPQHDGAWCDELAKWRYAGETWDQLQFGLRLGDKPRQVVT--TTPRPIPVLK 205 Query: 239 DIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIP 298 I + S F ++ +Y + + R E+ + Sbjct: 206 QIIAAGTSR-VTRGSTHENRANLASTFLAEVVKKY-EGTRLGRQELNAEILDDVPGALWT 263 Query: 299 HNYIEEAMSREAIDDLYAPLIMGCDIAGE 327 + ++ MSR +++ D +G Sbjct: 264 RDMLD--MSRVGFPPDLVRVVVAVDPSGT 290 >gi|188580687|ref|YP_001924132.1| hypothetical protein Mpop_1430 [Methylobacterium populi BJ001] gi|179344185|gb|ACB79597.1| protein of unknown function DUF264 [Methylobacterium populi BJ001] Length = 421 Score = 70.0 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 36/279 (12%), Positives = 71/279 (25%), Gaps = 34/279 (12%) Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP------GMSIICIANSETQL 120 + A+ GRG GKT A + L P I + + + Sbjct: 21 RHDQLPPPGDWTTWAVIGGRGSGKTRTGAEWVRGLAHGDPVFTAEAVGRIALVGETFADV 80 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 ++ + S L++ G + + S + Sbjct: 81 RDVMIEGPSGLLALPRL--------------GGPPPVWQPSRR---RVMFGNGAVALAFS 123 Query: 181 PDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 + A ++DE + + I R + T R Sbjct: 124 AEEPDSLRGPQFGAAWSDEVAKWREAEAAYDMIQFGLRLGAHPRGLVT--TTPRPVPLIR 181 Query: 239 DIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIP 298 + P + + F E ++ RY + R E+ G+ + + Sbjct: 182 RLLADPRT-VVTRSRTADNAQNLAPRFLEEVVGRYAGT-RIGRQELDGELIEDRPDALWT 239 Query: 299 HNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVV 334 + IE A + + D + G D + Sbjct: 240 RDGIERTRIHAAPPLQ--RIAVAVDPPASSRAGADACGI 276 >gi|221196218|ref|ZP_03569265.1| conserved hypothetical protein [Burkholderia multivorans CGD2M] gi|221202891|ref|ZP_03575910.1| conserved hypothetical protein [Burkholderia multivorans CGD2] gi|221176825|gb|EEE09253.1| conserved hypothetical protein [Burkholderia multivorans CGD2] gi|221182772|gb|EEE15172.1| conserved hypothetical protein [Burkholderia multivorans CGD2M] Length = 424 Score = 70.0 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 32/265 (12%), Positives = 67/265 (25%), Gaps = 35/265 (13%) Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 + + + + I GR GKTTL G+ + + Sbjct: 14 QAEIGRAFNESRRVVIRCGRRFGKTTLLERCASKWAYN--GLKVGWFGPTYK-------- 63 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 + ++ ++ P + ++Q + ++S E Sbjct: 64 ---------LNLPTYKRILRTVQPVVYSKSKIDQVIELNSGGCIEFWTLQDE------DA 108 Query: 187 PHNTHGMAVFNDEASGTPDI----INKSILGFFTELNPNRFWIMTSNTRR--LNGWFYDI 240 + V DE S P ++I + + + +FY+ Sbjct: 109 GRSRFYDRVIIDEGSLVPKGLRSIWEQAIAPTLLDRKGHAIMA--GTPKGIDPENFFYEA 166 Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 W+ + T + +D + Y + V + E L F F Sbjct: 167 CTDKTLGWREFHAPTASNPMLDPEAVARLKDEY--PALVYQQEYLADFVDWNGAAFFSEE 224 Query: 301 YIEEAMSREAIDDLYAPLIMGCDIA 325 + + D A Sbjct: 225 SLLVDGEPVDYPTRCDQVFAVVDTA 249 >gi|30062205|ref|NP_836376.1| putative bacteriophage protein [Shigella flexneri 2a str. 2457T] gi|56479715|ref|NP_706602.2| putative bacteriophage protein [Shigella flexneri 2a str. 301] gi|30040450|gb|AAP16182.1| putative bacteriophage protein [Shigella flexneri 2a str. 2457T] gi|56383266|gb|AAN42309.2| putative bacteriophage protein [Shigella flexneri 2a str. 301] gi|332763396|gb|EGJ93636.1| hypothetical protein SFK671_0791 [Shigella flexneri K-671] gi|332768294|gb|EGJ98479.1| hypothetical protein SF293071_0838 [Shigella flexneri 2930-71] gi|333021628|gb|EGK40878.1| hypothetical protein SFK304_0897 [Shigella flexneri K-304] Length = 207 Score = 70.0 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 24/215 (11%), Positives = 66/215 (30%), Gaps = 22/215 (10%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GR K+ A + + +S + + C + +++ +++ + + RH F + Sbjct: 10 GGRSSSKSWDAAGIAI-FLSNKYTLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRI 68 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + + + + + ++ +EA Sbjct: 69 LNNKIINRV-------------TGSEFVFYGLWR----NIEEIKSLEGIDMLWLEEAHAL 111 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRYQIDTRTVEGID 262 + K + + ++I N + + + F P E +I+ + Sbjct: 112 TEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEGTLIRKINYDENPFLS 169 Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297 + I + D D + G P+ + + I Sbjct: 170 DTMLKVIDAARRRDPDGFKHVYEGV-PESDDDAAI 203 >gi|331652431|ref|ZP_08353450.1| putative phage terminase [Escherichia coli M718] gi|331050709|gb|EGI22767.1| putative phage terminase [Escherichia coli M718] Length = 283 Score = 70.0 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 42/288 (14%), Positives = 87/288 (30%), Gaps = 35/288 (12%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 M+ + + K A AG G GKT + + I PG++ A + Sbjct: 1 MMKMISPTLNVPQARFLSMPHKFKAYIAGFGSGKTWVGCGGICKGIWEHPGINQGYFAPT 60 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 Q+++ + V + + + E ++ + Y T Sbjct: 61 YPQIRDIFYPTVEEVAADWG-------------LNVKINEGNKEVHFYYGRQYRGTTICR 107 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL-----NPNRFWIMTSNTR 231 S E+P DE P ++ + R I + T Sbjct: 108 SMEKP---QTIVGFKIGNALVDELDILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTP 164 Query: 232 RLNGWFYDIFNIPLED-------WKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIE 283 + Y+ F + + + Q T E + + + ++ Y ++ + Sbjct: 165 EGFKFVYEQFVKAVREKTELASLYGLVQASTFDNEKNLPADYIPSLLESY--PPELIKAY 222 Query: 284 ILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD--IAGEGG 329 + GQF + + + E ++ P+ +G D + GG Sbjct: 223 LRGQFTNLTSGTVYHQ-FDRKLNNCEEVEQPGEPIYIGMDFNVGKMGG 269 >gi|66396048|ref|YP_240381.1| ORF008 [Staphylococcus phage 71] gi|62636467|gb|AAX91578.1| ORF008 [Staphylococcus phage 71] Length = 421 Score = 70.0 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 33/270 (12%), Positives = 76/270 (28%), Gaps = 25/270 (9%) Query: 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136 I GRG GK++ + ++ + R M+ + I ++ L +++ ++ + Sbjct: 27 ILNIIAKGGRGSGKSSDISIIIT-QLIMRYPMNAVVIRKTDNTLATSVFEQIKWAIEEQK 85 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 H F+++ + + + I R + + Sbjct: 86 VSHLFKVKVSPM------------EITYIPRGNRIIFRGAQNPERLKSLKDSRFPFSVAW 133 Query: 197 NDE-ASGTPDIINKSILGFF----TELNPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDW 248 +E A + +I + + + N R W + ++ Sbjct: 134 IEELAEFKTEDEVTTITNSLLRGELDEGLFYKFFFSYNPPKRKQSWVNKKYESSFQADNT 193 Query: 249 KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR 308 + I F + S + R E +G+ +P N + Sbjct: 194 FVHHSTYLNNPFISKQFIQEAESAKKRNEQRYRWEYMGEAIGSG---VVPFNNLRIEEIP 250 Query: 309 EAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338 + D + + D G D V Sbjct: 251 QGQYDTFDNIRNAVDF-GYATDPLAFVRWH 279 >gi|85059534|ref|YP_455236.1| putative phage terminase large subunit [Sodalis glossinidius str. 'morsitans'] gi|84780054|dbj|BAE74831.1| putative phage terminase large subunit [Sodalis glossinidius str. 'morsitans'] Length = 240 Score = 70.0 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 64/214 (29%), Gaps = 22/214 (10%) Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 P +K A GRG GK+ A + + + R I+C + + +++ + + + Sbjct: 12 PAPYKVAY-GGRGRGKSYFFAELAIEVA-RRTKTVILCARELQESISDSVHKLLRETIDR 69 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 L + FE+Q ++ T T + + + Sbjct: 70 LGYNAEFEVQKNTII-----------------HLATGTTFIFLGVKNNVTKVKSAQGVGI 112 Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRYQI 253 + +EA +L WI N + + Y F P + + Sbjct: 113 CWVEEAEAVTKDSWDVLLPSIRGDKNAEVWISF-NPKNILDDTYQRFIVNPPKGAIILKA 171 Query: 254 DTRTVEGI-DSGFHEGIISRYGLDSDVARIEILG 286 + DS + + + D R G Sbjct: 172 NYSDNPYFHDSPLPQQMEECKERNVDRCRCRREG 205 >gi|219053375|ref|YP_002455734.1| phage terminase, large subunit, pbsx family protein [Borrelia afzelii ACA-1] gi|226234324|ref|YP_002775459.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi Bol26] gi|216752668|gb|ACJ73353.1| phage terminase, large subunit, pbsx family protein [Borrelia afzelii ACA-1] gi|226202138|gb|ACO37810.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi Bol26] Length = 396 Score = 70.0 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 78/235 (33%), Gaps = 24/235 (10%) Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 + + ++ ++ N IF + RG GKT A + L + G + I + Sbjct: 3 LRRLPIYVNAYKEKPNAEIF--IYYSSRGTGKTYDIATVNLERKFSVDGGDTLAIRKKKN 60 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 + ++ E+ + LS R +F + + S+ K + E Sbjct: 61 KTTQSIHKEILELLSRYNLRKFFNISKAKIESK---------SLIFGKKRAFVF-----E 106 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 DT H ++ +EA+ + ++ E + SN + W Y Sbjct: 107 GGHDTRDLKSYAHFKDLWLEEANQFSADDIEMLIPTMREQGGRIYMS--SNPVPKSHWLY 164 Query: 239 DIFNIPLEDW--KRYQIDTRTVEGID----SGFHEGIISRYGLDSDVARIEILGQ 287 + ++ + R ++ + E Y + RIE+LG+ Sbjct: 165 KRYLANEDNPAVCIIKSTYRDNPFLNGGDVEAWLEKQKLAYHGNDIGFRIEVLGE 219 >gi|198242430|ref|YP_002214959.1| hypothetical protein SeD_A1100 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|193876434|gb|ACF24836.1| ORF11 [Salmonella enterica subsp. enterica serovar Dublin] gi|197936946|gb|ACH74279.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326622711|gb|EGE29056.1| hypothetical protein SD3246_1075 [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 423 Score = 70.0 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 47/278 (16%), Positives = 78/278 (28%), Gaps = 41/278 (14%) Query: 70 VNNSNPTIFKCAISAGRGIGKTT-LNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128 + I AGR GKTT L W Q++ +A Sbjct: 17 KKIYRSPAKRKVIRAGRRFGKTTMLEQAGGNWAA---------------RQMRVGWFAPS 61 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188 K L LP + S + + + +G + D Sbjct: 62 YKIL--LPSFKTIRDLLKPITISSSKTDSIIELIGGGLVEFWTL---------DNPDAGR 110 Query: 189 NTHGMAVFNDEAS----GTPDIINKSILGFFTELNPNRFWIMTSNTRR--LNGWFYDIFN 242 + V DE S G DI ++I + + + + +FY N Sbjct: 111 SRKYHKVIIDEGSLVKKGMRDIWEQAIEPTLLDFDGDAVMA--GTPKGVDDENFFYQACN 168 Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302 W+ + T I+ II G V + E +F NF +++ Sbjct: 169 DKSMGWEEHHAPTAANPTINPAALARIID--GRPPLVVQQEYNAEFVDWRGQNFFKLDWL 226 Query: 303 EEAMSREAIDDLYAPLIMGCDIAGEG---GDKTV-VVF 336 E + + D A +G D + + F Sbjct: 227 LENGAPVDYPFSCDTVYGVVDCAQKGKLQNDGSACIWF 264 >gi|225851344|ref|YP_002731578.1| hypothetical protein PERMA_1815 [Persephonella marina EX-H1] gi|225646641|gb|ACO04827.1| conserved hypothetical protein [Persephonella marina EX-H1] Length = 518 Score = 70.0 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 49/367 (13%), Positives = 100/367 (27%), Gaps = 48/367 (13%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + ++ S + + E + + F F + + FS+P +Q ++ Sbjct: 12 LEKVKSRSPQQDPEKQARV--EKAKNDFWYFCSYY-------LSHKFFSEPAPYQKLLIQ 62 Query: 61 ------AVDVHCHSNVNNSNPTIFKCAISA----------GRGIGKTTLNAWMMLWLIST 104 A + P +K I RG GKTT +LW Sbjct: 63 LFNTRNATPEIVEKLKEWTEPETWKYLIPKKNIKGIINIEPRGHGKTTRAEAFLLWNAIF 122 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 +I+ IA S+ + L + F S + + S+ Sbjct: 123 EKHKNIMVIAASKEAAEEILENIKLEVEENEKLLEDFGELEGSPWKANYIKFKNGVSISA 182 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224 I S + + E+ + I + + Sbjct: 183 RGIDGRIRG---SRKGATRPDLILCDDLIKDQAAESPTLREKIYNRFKRAVLPMADRDAF 239 Query: 225 IMTSNT-----RRLNGWFYDIFNIPLEDWKR-------YQIDTRTVEGIDSGFHEGIISR 272 I+ +NT + + ++W + DS + + + Sbjct: 240 IIFTNTILHYDDLPSRLLKEYEQGKHKEWFAVFFATPFIDKNGEEKALWDSYWDLESLRK 299 Query: 273 YGLD--SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEG-- 328 S E + P+ E + ++ + + ++MG D A G Sbjct: 300 KEEQIGSTAFAQEYRNR-PRSEKDMIFKPDWFQY-YDITEVWGKKLDVVMGVDPA-TGKK 356 Query: 329 -GDKTVV 334 GD + + Sbjct: 357 DGDYSAI 363 >gi|219048282|ref|YP_002455497.1| PbsX family phage terminase large subunit [Borrelia afzelii ACA-1] gi|216752464|gb|ACJ73223.1| phage terminase, large subunit, pbsx family protein [Borrelia afzelii ACA-1] Length = 396 Score = 70.0 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 79/235 (33%), Gaps = 24/235 (10%) Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 + + ++ ++ N IF + RG GKT A + L + G + I + Sbjct: 3 LRRLPIYVNAYKEKPNAEIF--IYYSSRGTGKTYDIATVNLERKFSVDGGDTLAIRKKKN 60 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 + ++ E+ + LS+ R +F + + S+ K + E Sbjct: 61 KTTQSIHKEILELLSIYGLRKFFNISKAKIESK---------SLIFGKKRAFVF-----E 106 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 DT H ++ +EA+ + ++ E + SN + W Y Sbjct: 107 GGHDTRDLKSYAHFKDLWLEEANQFSSDDIEMLIPTMREQGGRIYMS--SNPVPKSHWLY 164 Query: 239 DIFNIPLEDW--KRYQIDTRTVEGID----SGFHEGIISRYGLDSDVARIEILGQ 287 + ++ + R ++ + E Y + RIE+LG+ Sbjct: 165 KRYLANEDNPAVCIIKSTYRDNPFLNGGDVEAWLEKQKLAYHGNDIGFRIEVLGE 219 >gi|332761025|gb|EGJ91313.1| hypothetical protein SF434370_0892 [Shigella flexneri 4343-70] Length = 235 Score = 70.0 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 24/215 (11%), Positives = 66/215 (30%), Gaps = 22/215 (10%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GR K+ A + + +S + + C + +++ +++ + + RH F + Sbjct: 38 GGRSSSKSWDAAGIAI-FLSNKYTLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRI 96 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + + + + + ++ +EA Sbjct: 97 LNNKIINRV-------------TGSEFVFYGLWR----NIEEIKSLEGIDMLWLEEAHAL 139 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRYQIDTRTVEGID 262 + K + + ++I N + + + F P E +I+ + Sbjct: 140 TEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEGTLIRKINYDENPFLS 197 Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297 + I + D D + G P+ + + I Sbjct: 198 DTMLKVIDAARRRDPDGFKHVYEGV-PESDDDAAI 231 >gi|281600057|gb|ADA73041.1| putative bacteriophage protein [Shigella flexneri 2002017] Length = 233 Score = 70.0 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 24/215 (11%), Positives = 66/215 (30%), Gaps = 22/215 (10%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GR K+ A + + +S + + C + +++ +++ + + RH F + Sbjct: 36 GGRSSSKSWDAAGIAI-FLSNKYTLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRI 94 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + + + + + ++ +EA Sbjct: 95 LNNKIINRV-------------TGSEFVFYGLWR----NIEEIKSLEGIDMLWLEEAHAL 137 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRYQIDTRTVEGID 262 + K + + ++I N + + + F P E +I+ + Sbjct: 138 TEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEGTLIRKINYDENPFLS 195 Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297 + I + D D + G P+ + + I Sbjct: 196 DTMLKVIDAARRRDPDGFKHVYEGV-PESDDDAAI 229 >gi|313649580|gb|EFS14005.1| hypothetical protein SF2457T_1962 [Shigella flexneri 2a str. 2457T] gi|332761193|gb|EGJ91479.1| hypothetical protein SF274771_0829 [Shigella flexneri 2747-71] gi|333008085|gb|EGK27561.1| hypothetical protein SFK218_0991 [Shigella flexneri K-218] Length = 227 Score = 70.0 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 24/215 (11%), Positives = 66/215 (30%), Gaps = 22/215 (10%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GR K+ A + + +S + + C + +++ +++ + + RH F + Sbjct: 30 GGRSSSKSWDAAGIAI-FLSNKYTLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRI 88 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + + + + + ++ +EA Sbjct: 89 LNNKIINRV-------------TGSEFVFYGLWR----NIEEIKSLEGIDMLWLEEAHAL 131 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRYQIDTRTVEGID 262 + K + + ++I N + + + F P E +I+ + Sbjct: 132 TEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEGTLIRKINYDENPFLS 189 Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297 + I + D D + G P+ + + I Sbjct: 190 DTMLKVIDAARRRDPDGFKHVYEGV-PESDDDAAI 223 >gi|331028117|ref|YP_004421831.1| phage terminase large subunit [Roseobacter phage RDJL Phi 1] gi|301341580|gb|ADK73464.1| phage terminase large subunit [Roseobacter phage RDJL Phi 1] Length = 452 Score = 69.6 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 73/278 (26%), Gaps = 25/278 (8%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGM----SIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 GRG K+ A +++ R + + LK+++ + + Sbjct: 24 GGRGGAKSHSFAEVLVDKGYERGRGDGTFRWLFAREIQGSLKDSVKKLLEDKIRSQGLGP 83 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 E +G+Y G D + + R + + +E Sbjct: 84 KEEGG------NGFYRITERTITGGDGRTEFLFA----GLRTNPDSVKSMEGLDGAWVEE 133 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF--NIPLEDWKRYQIDTRT 257 A+ + + +W N + + F P ++ Sbjct: 134 ANKVSQRSIDLLTPTVRKPGSELWWSF--NRGSVKDPVDNRFLGGTPPPRSLIRKVGWED 191 Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317 +E ++ D D G + + +E + Sbjct: 192 NPWFPQDLYEEMMWDKARDHDKWLHVWEGHPVTMSESRVFQNWTVE---DIDDQVPEGCI 248 Query: 318 LIMGCDIAGEGGDKTVVVFRR--GNIIEHIFD-WSAKL 352 MG D G D +V+V G + + W KL Sbjct: 249 PRMGAD-WGFANDPSVLVLVYIFGRTMYIRAERWKLKL 285 >gi|56560985|ref|YP_161401.1| hypothetical protein BGP116 [Borrelia garinii PBi] gi|52696625|gb|AAU85966.1| hypothetical protein BGP116 [Borrelia garinii PBi] Length = 336 Score = 69.6 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 80/235 (34%), Gaps = 24/235 (10%) Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 + + ++ ++ N IF + RG GKT A + L + G + I + Sbjct: 3 LRRLPIYVNAYKEKPNAEIF--IYYSSRGTGKTYDIATVNLERKFSVDGGDTLAIRKKKN 60 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 + ++ E+ + LS+ R +F + + S+ K + E Sbjct: 61 KTTQSIHKEILELLSIYSLRKFFNISKAKIESK---------SLIFGKKRAFVF-----E 106 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 DT TH ++ +EA+ + ++ E + SN + W Y Sbjct: 107 GGHDTRDLKSYTHFKDLWLEEANQFSSDDIEMLIPTMREQGGRIYMS--SNPVPKSHWLY 164 Query: 239 DIFNIPLEDW--KRYQIDTRTVEGID----SGFHEGIISRYGLDSDVARIEILGQ 287 + ++ + R ++ + E Y + RIE+LG+ Sbjct: 165 KRYLANQDNPAVCIIKSTYRDNPFLNGGDVEAWLEKQKLAYHGNDIGFRIEVLGE 219 >gi|108760232|ref|YP_629471.1| hypothetical protein MXAN_1212 [Myxococcus xanthus DK 1622] gi|108464112|gb|ABF89297.1| conserved hypothetical protein [Myxococcus xanthus DK 1622] Length = 471 Score = 69.6 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 34/306 (11%), Positives = 73/306 (23%), Gaps = 41/306 (13%) Query: 48 FSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107 F ++E + + C + AGRG GKT A ++ Sbjct: 41 FGGLDDKEVELLVYDLDFWARREQSPPDKFSTCFVMAGRGFGKTWCGARWVIKKAWQAK- 99 Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 I + +++T+ S L++ P + + + Sbjct: 100 SVGALIGPTAADVRDTMIRGASGILALSPPWFTPKYEPSKRRVT---------------- 143 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT----ELNPNRF 223 D + + DE + + Sbjct: 144 --WPNGVYAICYSADKPDRLRGPNAGWGWGDEPASWKHDMAAVDQLPLVLRIGSREDPPQ 201 Query: 224 WIMTSNTRRLNGWFYDIFNIPL----EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279 ++T R L +F + + + + R ++ Sbjct: 202 LLLTGTPRPLKKIEELLFANAETQELKPGVVLRTGSSLSNFANLAPSAVANMRALANTRW 261 Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY------APLIMGCDI---AGEGGD 330 + E+LG+ A D + I+ D + G D Sbjct: 262 GQQEVLGRLLFDVPGAIFG-----SAKWGRVEADAHEYAQQLDRRIVSVDPSPTSETGSD 316 Query: 331 KTVVVF 336 +T ++ Sbjct: 317 ETGIIV 322 >gi|66394679|ref|YP_240816.1| ORF009 [Staphylococcus phage X2] gi|62636903|gb|AAX92014.1| ORF009 [Staphylococcus phage X2] Length = 421 Score = 69.6 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 33/275 (12%), Positives = 77/275 (28%), Gaps = 25/275 (9%) Query: 72 NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131 + I GRG GK++ + ++ + R M+ + I ++ L +++ ++ Sbjct: 22 TKDKEILNIVAKGGRGSGKSSDISIIIT-QLIMRYPMNAVVIRKTDNTLATSVFEQIKWA 80 Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191 + H F+++ + + + I R + Sbjct: 81 IEEQKVSHLFKVKVSPM------------EITYIPRGNRIIFRGAQNPERLKSLKDSRFP 128 Query: 192 GMAVFNDE-ASGTPDIINKSILGFF----TELNPNRFWIMTSNTR-RLNGWFYDIFN--I 243 + +E A + +I + + + N R W + Sbjct: 129 FSISWIEELAEFKTEDEVTTITNSLLRGELDEGLFYKFFFSYNPPKRKQSWVNKKYESSF 188 Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303 ++ + I F + S + R E +G+ +P N + Sbjct: 189 QADNTYVHHSTYLNNPFISKQFIQEAESAKKRNEQRYRWEYMGEAIGSG---VVPFNNLR 245 Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338 + D + + D G D V Sbjct: 246 IEEIPQRQYDTFDNIRNAVDF-GYATDPLAFVRWH 279 >gi|257468179|ref|ZP_05632275.1| putative terminase large subunit - phage associated protein [Fusobacterium ulcerans ATCC 49185] gi|317062464|ref|ZP_07926949.1| terminase large subunit G2p [Fusobacterium ulcerans ATCC 49185] gi|313688140|gb|EFS24975.1| terminase large subunit G2p [Fusobacterium ulcerans ATCC 49185] Length = 429 Score = 69.6 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 45/293 (15%), Positives = 90/293 (30%), Gaps = 14/293 (4%) Query: 62 VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121 + V N + + GRG K+T A M++ + + P ++IIC + L+ Sbjct: 3 IPKFWEVWVAWKNFDYLRYVLKGGRGSAKSTHIALMLVLTLISEP-INIICFRKIKDNLE 61 Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 +++ ++ K + +L +F ++ L G+D T + T + Sbjct: 62 TSVYEQIKKAIQLLGIEEFFVFKTSPLEIIYKERGNQFIFRGLDKAEKTKSIVTANFPIG 121 Query: 182 DTFVGPHNTHGMAVFNDEA------SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 + + A + ++LG + N R Sbjct: 122 AWWFEELAEFKNEKEVETAIKSILRENLKEYEYTNMLGEKKIKKMKYRGFFSYNPPREKQ 181 Query: 236 WFYDI---FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292 + + F+ ++ + I + F E + D R E LG+ Q Sbjct: 182 HWVNQKYSFSTKPQNTFVHHSTYLDNPYISTEFKEDAQATKEKDPTTYRGEFLGEVVGQG 241 Query: 293 VNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHI 345 IP + + + G D G G D + + I Sbjct: 242 ---IIPFPNLILRKITDQEIRSFDNFRNGID-WGYGVDPVAFGRWHWDSMRRI 290 >gi|203288763|ref|YP_002223713.1| hypothetical protein BDU_2013 [Borrelia duttonii Ly] gi|201084613|gb|ACH94190.1| uncharacterized conserved protein [Borrelia duttonii Ly] Length = 398 Score = 69.6 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 70/210 (33%), Gaps = 22/210 (10%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 + RG GKT A + L + G + + + + ++ E+ + LS R F + Sbjct: 27 SSRGTGKTYDIATVNLERKFAKDGGDTLAVRKKKNKTTQSIHKEILELLSRYNLRREFTI 86 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + + K + E DT H ++ +EA+ Sbjct: 87 SKAKI---------ETKKLIYGRKRAFVF-----EGGHDTTDLKSYAHFKDLWLEEANQF 132 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW--KRYQIDTRTVEGI 261 + + ++ E + SN + W Y + ++ + R + Sbjct: 133 TESDIEKLIPTMRERGGRIYMS--SNPVPRSHWLYKRYIANEDNPSVCVIKSTYRDNPFL 190 Query: 262 D----SGFHEGIISRYGLDSDVARIEILGQ 287 + + + E Y + RIE+LG+ Sbjct: 191 NGGDVNAWLEKQKLAYHGNDIGFRIEVLGE 220 >gi|56560912|ref|YP_161331.1| hypothetical protein BGP046 [Borrelia garinii PBi] gi|52696553|gb|AAU85896.1| hypothetical protein BGP046 [Borrelia garinii PBi] Length = 450 Score = 69.6 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 89/302 (29%), Gaps = 35/302 (11%) Query: 43 KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102 KP +++ E + ++ +N K +S G GKT L ++ + + Sbjct: 29 KPTNSSIHFDQFEKEHLTVKQNRVIKSIQKNNEK--KIILSGGIASGKTYLACYLFIKSL 86 Query: 103 STRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 + + I NS+ ++ + + K +L + + S Sbjct: 87 LSNKKLYSSDTNNFIIGNSQRSVEVNVLGQFEKLCKLLDISYIPRHTNNSYIMIDSLRIN 146 Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217 Y ++ F ++ +F +EA+ + +L Sbjct: 147 -----------------LYGGDKASDFERFRGSNSTLIFVNEATTLHKQTLEEVLKRL-- 187 Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277 I +N +F + + +K Y T + GF E Y Sbjct: 188 RCGQETIIFDTNPDHPEHYFKTDYIDNVATFKTYNFTTYDNVLLSKGFIETQEKLYKEIP 247 Query: 278 DVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336 +LG++ + F N ++ + I D A GGD T + Sbjct: 248 TYKARVLLGEWIASTDSIFTQINITQDYVFTSP--------IAYLDPAFSIGGDNTALCV 299 Query: 337 RR 338 Sbjct: 300 MD 301 >gi|195942183|ref|ZP_03087565.1| hypothetical protein Bbur8_04905 [Borrelia burgdorferi 80a] gi|219786709|ref|YP_002477434.1| phage terminase, large subunit, pbsx family protein [Borrelia burgdorferi 156a] gi|219692709|gb|ACL33925.1| phage terminase, large subunit, pbsx family protein [Borrelia burgdorferi 156a] gi|312148688|gb|ADQ31340.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi JD1] gi|312148897|gb|ADQ31544.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi JD1] gi|312201269|gb|ADQ44578.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi 297] Length = 396 Score = 69.2 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 78/235 (33%), Gaps = 24/235 (10%) Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 + + V+ + N IF + RG GKT A + L + G + I + Sbjct: 3 LRRLPVYVDAYKEKPNAEIF--IYYSSRGTGKTYDIATVNLERKFSADGGDTLAIRKKKN 60 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 + ++ E+ + LS+ R +F + + S+ K + E Sbjct: 61 KTTQSIHKEILELLSIYNLRKFFNISKAKIESK---------SLIFGKKRAFVF-----E 106 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 DT H ++ +EA+ + ++ E + SN + W Y Sbjct: 107 GGHDTRDLKSYAHFKDLWLEEANQFSADDIEMLIPTMREQGGRIYMS--SNPVPKSHWLY 164 Query: 239 DIFNIPLEDW--KRYQIDTRTVEGID----SGFHEGIISRYGLDSDVARIEILGQ 287 + ++ + R ++ + E Y + RIE+LG+ Sbjct: 165 KRYLSNQDNPAVCIIKSTYRDNPFLNGGDVQAWLEKQRLAYHGNDIGFRIEVLGE 219 >gi|333007271|gb|EGK26754.1| hypothetical protein SFVA6_1126 [Shigella flexneri VA-6] Length = 235 Score = 69.2 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 24/215 (11%), Positives = 66/215 (30%), Gaps = 22/215 (10%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GR K+ A + + +S + + C + +++ +++ + + RH F + Sbjct: 38 GGRSSSKSWDAAGIAI-FLSNKYTLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRI 96 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + + + + + ++ +EA Sbjct: 97 LNNKIINRV-------------TGSEFVFYGLWR----NIEEIKSLEGIDVLWLEEAHAL 139 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRYQIDTRTVEGID 262 + K + + ++I N + + + F P E +I+ + Sbjct: 140 TEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEGTLIRKINYDENPFLS 197 Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297 + I + D D + G P+ + + I Sbjct: 198 DTMLKVIDAARRRDPDGFKHVYEGV-PESDDDAAI 231 >gi|110804741|ref|YP_688261.1| putative bacteriophage protein [Shigella flexneri 5 str. 8401] gi|110614289|gb|ABF02956.1| putative bacteriophage protein [Shigella flexneri 5 str. 8401] Length = 233 Score = 69.2 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 24/215 (11%), Positives = 66/215 (30%), Gaps = 22/215 (10%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GR K+ A + + +S + + C + +++ +++ + + RH F + Sbjct: 36 GGRSSSKSWDAAGIAI-FLSNKYTLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRI 94 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + + + + + ++ +EA Sbjct: 95 LNNKIINRV-------------TGSEFVFYGLWR----NIEEIKSLEGIDVLWLEEAHAL 137 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRYQIDTRTVEGID 262 + K + + ++I N + + + F P E +I+ + Sbjct: 138 TEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEGTLIRKINYDENPFLS 195 Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297 + I + D D + G P+ + + I Sbjct: 196 DTMLKVIDAARRRDPDGFKHVYEGV-PESDDDAAI 229 >gi|224797098|ref|YP_002642985.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi CA-11.2a] gi|224554508|gb|ACN55891.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi CA-11.2a] Length = 396 Score = 69.2 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 78/235 (33%), Gaps = 24/235 (10%) Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 + + V+ + N IF + RG GKT A + L + G + I + Sbjct: 3 LRRLPVYVDAYKEKPNAEIF--IYYSSRGTGKTYDIATVNLERKFSADGGDTLAIRKKKN 60 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 + ++ E+ + LS+ R +F + + S+ K + E Sbjct: 61 KTTQSIHKEILELLSIYNLRKFFNISKAKIESK---------SLIFGKKRAFVF-----E 106 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 DT H ++ +EA+ + ++ E + SN + W Y Sbjct: 107 GGHDTRDLKSYAHFKDLWLEEANQFSSDDIEMLIPTMREQGGRIYMS--SNPVPKSHWLY 164 Query: 239 DIFNIPLEDW--KRYQIDTRTVEGID----SGFHEGIISRYGLDSDVARIEILGQ 287 + ++ + R ++ + E Y + RIE+LG+ Sbjct: 165 KRYLSNQDNPAVCIIKSTYRDNPFLNGGDVQAWLEKQKLAYHGNDIGFRIEVLGE 219 >gi|333010102|gb|EGK29537.1| hypothetical protein SFK272_0968 [Shigella flexneri K-272] Length = 227 Score = 69.2 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 24/215 (11%), Positives = 66/215 (30%), Gaps = 22/215 (10%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GR K+ A + + +S + + C + +++ +++ + + RH F + Sbjct: 30 GGRSSSKSWDAAGIAI-FLSNKYTLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRI 88 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + + + + + ++ +EA Sbjct: 89 LNNKIINRV-------------TGSEFVFYGLWR----NIEEIKSLEGIDVLWLEEAHAL 131 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRYQIDTRTVEGID 262 + K + + ++I N + + + F P E +I+ + Sbjct: 132 TEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEGTLIRKINYDENPFLS 189 Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297 + I + D D + G P+ + + I Sbjct: 190 DTMLKVIDAARRRDPDGFKHVYEGV-PESDDDAAI 223 >gi|194100463|ref|YP_002003836.1| gp19 [Klebsiella phage K11] gi|193201402|gb|ACF15880.1| gp19 [Klebsiella phage K11] Length = 585 Score = 69.2 bits (167), Expect = 9e-10, Method: Composition-based stats. Identities = 49/392 (12%), Positives = 102/392 (26%), Gaps = 86/392 (21%) Query: 13 QELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNN 72 Q+ L+ A+ F F+ F W P +P + Q++ + + Sbjct: 5 QQAKNALIIAQLKGDFVAFL--FVLWKALNLP-----EPTKCQIDMAKCLA--------- 48 Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 NP K + A RGIGK+ + ++W + P + I+ ++ S+ + + + Sbjct: 49 -NPKNKKFILQAFRGIGKSFITCAFVVWTLWRDPQLKILIVSASKERADANSIF-IKNII 106 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAE-LLEQSMGIDSKHYTITCRTY----------SEERP 181 +LP + + + + K IT + E P Sbjct: 107 DLLPFLSELKPRPGQRDSVISFDVGPAKPDHSPSVKSVGITGQLTGSRADIIIADDVEIP 166 Query: 182 DTFVGPHNTHGMAVFNDEASGT-------------PDIINKSILGFFTE--LNPNRFWIM 226 + E + ++ + W Sbjct: 167 GNSATQGAREKLWTLVQEFAALLKPLPTSRVIYLGTPQTEMTLYKELEDNRGYSTIIWPA 226 Query: 227 TSNTRRLNGWFYDIFNIP------LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280 + +Y P ED + DS + YG Sbjct: 227 QYPRSKEEDLYYGDRLAPMLRSEYDEDKEGLSSQPTDPVRFDSMDLQEREVEYGKAGYTL 286 Query: 281 RIEI-----LGQ-FPQQEVNNFI-PHNYIEEAMSREAIDD-------------------- 313 + + + +P + + + + M + + + Sbjct: 287 QFMLNPNLSDAEKYPLRLRDAIVCGLQMDKAPMHYQWLPNRQNRNEELPNVGMKGDEIYS 346 Query: 314 ---------LYAPLIMGCDIAGEGGDKTVVVF 336 Y I+ D +G G D+T Sbjct: 347 FHTASSNTGAYQGKILVIDPSGRGKDETGWCV 378 >gi|66395738|ref|YP_240074.1| ORF009 [Staphylococcus phage 37] gi|62636161|gb|AAX91272.1| ORF009 [Staphylococcus phage 37] Length = 419 Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 38/293 (12%), Positives = 88/293 (30%), Gaps = 30/293 (10%) Query: 57 EFMEAVDVHCHSN-VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 + E + H HS + GRG GK++ A +++ L+ R ++ + + Sbjct: 4 KLSELIPEHFHSLWHAAKDKGKLNIVAKGGRGSGKSSDIAIIIV-LLIMRYPVNALILRK 62 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 + L +++ ++ ++++ H F+++ + + + + R Sbjct: 63 IDNTLALSVFEQIKWAINVMGVSHLFKIKVSPM------------EITYVPRGNKMVFRG 110 Query: 176 YSEERPDTFVGPHNTHG--MAVFNDE-ASGTPDIINKSILGFFTEL----NPNRFWIMTS 228 P+ + + +E A + +I + T Sbjct: 111 AQ--NPERIKSLKDAQFPYAIAWIEELAEFKTEDEVTTITNSLLRGELDNGLFYKFFYTY 168 Query: 229 NTR-RLNGWFYDIFN--IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285 N R W + ++ + I F E + ++ R E L Sbjct: 169 NPPKRKQSWVNKKYESSFQPDNTFVHHSTYLNNPFIAKEFIEEAKAAKAINELRYRWEYL 228 Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338 G+ +P N + + D + + D G D V Sbjct: 229 GEAIGSG---VVPFNNLRIETIPKEQFDTFDNIRNAVDF-GYATDPLAFVRWH 277 >gi|256956800|ref|ZP_05560971.1| terminase large subunit [Enterococcus faecalis DS5] gi|256947296|gb|EEU63928.1| terminase large subunit [Enterococcus faecalis DS5] Length = 424 Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 34/267 (12%), Positives = 81/267 (30%), Gaps = 11/267 (4%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 N I GRG GK++ A ++ + R ++ + I + L+ +++ ++ + Sbjct: 24 NSDILNIVCKGGRGSGKSSDIA-HIITQLLMRYAVNAVGIRYVDNTLEQSIYEQMKWAIE 82 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 H F+ L + G + + + ++ Sbjct: 83 QQGVTHLFKFNKSPLRITYIPRGNYMIFRGAQNPERIKSLKDSRFPFAIGWIEELGEFKT 142 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN--IPLEDWKRY 251 DE + + + + G +F+ + +R W + E+ + Sbjct: 143 ---EDEVTTITNSL---LRGELGNGLFYKFFFSYNPPKRRQSWVNKKYESSFQPENTFVH 196 Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311 + I F + + + + AR E G+ + +E+ + + Sbjct: 197 HSTYKDNPFISREFLKEVEAARDRNPLRARWEYDGE-AIGSGVVPFSNLKVEKGCITDEM 255 Query: 312 DDLYAPLIMGCDIAGEGGDKTVVVFRR 338 + + G D G D V Sbjct: 256 VANFDNIRNGLDF-GYATDPLAFVRWH 281 >gi|295113782|emb|CBL32419.1| phage terminase, large subunit, PBSX family [Enterococcus sp. 7L76] gi|315035888|gb|EFT47820.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis TX0027] Length = 425 Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 34/267 (12%), Positives = 81/267 (30%), Gaps = 11/267 (4%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 N I GRG GK++ A ++ + R ++ + I + L+ +++ ++ + Sbjct: 25 NSDILNIVCKGGRGSGKSSDIA-HIITQLLMRYAVNAVGIRYVDNTLEQSIYEQMKWAIE 83 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 H F+ L + G + + + ++ Sbjct: 84 QQGVTHLFKFNKSPLRITYIPRGNYMIFRGAQNPERIKSLKDSRFPFAIGWIEELGEFKT 143 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN--IPLEDWKRY 251 DE + + + + G +F+ + +R W + E+ + Sbjct: 144 ---EDEVTTITNSL---LRGELGNGLFYKFFFSYNPPKRRQSWVNKKYESSFQPENTFVH 197 Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311 + I F + + + + AR E G+ + +E+ + + Sbjct: 198 HSTYKDNPFISREFLKEVEAARDRNPLRARWEYDGE-AIGSGVVPFSNLKVEKGCITDEM 256 Query: 312 DDLYAPLIMGCDIAGEGGDKTVVVFRR 338 + + G D G D V Sbjct: 257 VANFDNIRNGLDF-GYATDPLAFVRWH 282 >gi|169334313|ref|ZP_02861506.1| hypothetical protein ANASTE_00711 [Anaerofustis stercorihominis DSM 17244] gi|169259030|gb|EDS72996.1| hypothetical protein ANASTE_00711 [Anaerofustis stercorihominis DSM 17244] Length = 488 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 33/302 (10%), Positives = 81/302 (26%), Gaps = 48/302 (15%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 G G GK+ ++ I +++ + + + +A + + +F + Sbjct: 35 GGAGSGKSVFVVQRYVYKILNSDLCNVLVARKTGNTNRTSTFALFKQVIYKWNLGEYFLI 94 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + + G+D + + E D V+ +EAS Sbjct: 95 NKSDMSITCKLNKNQIIFKGLDDVEKIKSTTFETGELTD------------VWIEEASEI 142 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + K + + +M+ N + + + I + + ID Sbjct: 143 EEDDYKQLNVRLRGGKSKKQIVMSLNPIDI-NHWIKLKLINEDKATYLHTTYKDNRFIDE 201 Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA------- 316 + + S D + LG + ++ + ++++ Sbjct: 202 DYKRELESYKDTDIYYYNVYCLGMW-GVLGDSVFDVGVVNNQLAKDIRPVKRGYFLYDYD 260 Query: 317 ---------------------------PLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS 349 P ++G D AG+G D + + Sbjct: 261 GKDITNIRWIEDAGGYINIYEDVKGRYPYVIGGDTAGDGSDNFTAHVINNVTGQQVCTMK 320 Query: 350 AK 351 K Sbjct: 321 NK 322 >gi|224796986|ref|YP_002642738.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi WI91-23] gi|224553700|gb|ACN55104.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi WI91-23] gi|312149848|gb|ADQ29915.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi N40] Length = 396 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 78/235 (33%), Gaps = 24/235 (10%) Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 + + V+ + N IF + RG GKT A + L + G + I + Sbjct: 3 LRRLPVYVDAYKEKPNAEIF--IYYSSRGTGKTYDIATVNLERKFSADGGDTLAIRKKKN 60 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 + ++ E+ + LS+ R +F + + S+ K + E Sbjct: 61 KTTQSIHKEILELLSIYNLRKFFNISKAKIESK---------SLIFGKKRAFVF-----E 106 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 DT H ++ +EA+ + ++ E + SN + W Y Sbjct: 107 GGHDTRDLKSYAHFKDLWLEEANQFSADDIEMLVPTMREQGGRIYMS--SNPVPKSHWLY 164 Query: 239 DIFNIPLEDW--KRYQIDTRTVEGID----SGFHEGIISRYGLDSDVARIEILGQ 287 + ++ + R ++ + E Y + RIE+LG+ Sbjct: 165 KRYLSNQDNPAVCIIKSTYRDNPFLNGGDVQAWLEKQRLAYHGNDIGFRIEVLGE 219 >gi|226234361|ref|YP_002775493.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi 29805] gi|226201889|gb|ACO38473.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi 29805] Length = 396 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 78/235 (33%), Gaps = 24/235 (10%) Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 + + V+ + N IF + RG GKT A + L + G + I + Sbjct: 3 LRRLPVYVDAYKEKPNAEIF--IYYSSRGTGKTYDIATVNLERKFSADGGDTLAIRKKKN 60 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 + ++ E+ + LS+ R +F + + S+ K + E Sbjct: 61 KTTQSIHKEILELLSIYNLRKFFNISKAKIESK---------SLIFGKKRAFVF-----E 106 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 DT H ++ +EA+ + ++ E + SN + W Y Sbjct: 107 GGHDTRDLKSYAHFKDLWLEEANQFSADDIEMLVPTMREQGGRIYMS--SNPVPKSHWLY 164 Query: 239 DIFNIPLEDW--KRYQIDTRTVEGID----SGFHEGIISRYGLDSDVARIEILGQ 287 + ++ + R ++ + E Y + RIE+LG+ Sbjct: 165 KRYLSNQDNPAVCIIKSTYRDNPFLNGGDVQAWLEKQRLAYHGNDIGFRIEVLGE 219 >gi|11496682|ref|NP_045481.1| hypothetical protein BBG21 [Borrelia burgdorferi B31] gi|218868779|ref|YP_002455248.1| phage terminase, large subunit, pbsx family protein [Borrelia burgdorferi ZS7] gi|224796961|ref|YP_002642637.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi WI91-23] gi|224985496|ref|YP_002642672.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi 64b] gi|225548803|ref|YP_002724009.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi 118a] gi|2690026|gb|AAC66069.1| predicted coding region BBG21 [Borrelia burgdorferi B31] gi|218165273|gb|ACK75330.1| phage terminase, large subunit, pbsx family protein [Borrelia burgdorferi ZS7] gi|223929545|gb|ACN24257.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi 64b] gi|224554186|gb|ACN55578.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi WI91-23] gi|225546810|gb|ACN92808.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi 118a] Length = 396 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 78/235 (33%), Gaps = 24/235 (10%) Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 + + V+ + N IF + RG GKT A + L + G + I + Sbjct: 3 LRRLPVYVDAYKEKPNAEIF--IYYSSRGTGKTYDIATVNLERKFSADGGDTLAIRKKKN 60 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 + ++ E+ + LS+ R +F + + S+ K + E Sbjct: 61 KTTQSIHKEILELLSIYNLRKFFNISKAKIESK---------SLIFGKKRAFVF-----E 106 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 DT H ++ +EA+ + ++ E + SN + W Y Sbjct: 107 GGHDTRDLKSYAHFKDLWLEEANQFSADDIEMLVPTMREQGGRIYMS--SNPVPKSHWLY 164 Query: 239 DIFNIPLEDW--KRYQIDTRTVEGID----SGFHEGIISRYGLDSDVARIEILGQ 287 + ++ + R ++ + E Y + RIE+LG+ Sbjct: 165 KRYLSNQDNPAVCIIKSTYRDNPFLNGGDVQAWLEKQRLAYHGNDIGFRIEVLGE 219 >gi|315034678|gb|EFT46610.1| conserved hypothetical protein [Enterococcus faecalis TX0027] Length = 519 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 32/262 (12%), Positives = 61/262 (23%), Gaps = 21/262 (8%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS--KWLSMLP 136 + GK+ L++ + +WL + + + + Sbjct: 82 NIIVVTPSQYGKSWLSSRIAVWLADHN--RRCYVAGGKKDTTDIIMQHVTDTLQTVDESI 139 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 R E ++ G S + + Sbjct: 140 ARKLLEPVDKLERLQTGLSKRKISFSGGGSIEGISLGEHFKGNKSGNQAIGRGGD---YI 196 Query: 197 NDEASGTPDIINKSI--LGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254 DE++ + + F N SN G FYD K + Sbjct: 197 IDESAFVSNETYAELGRRNFANVDGKNYLSFEISNP-HNKGRFYDKLTQ-ENIPKGMLVV 254 Query: 255 TRTVEGIDSGFHEGIISR-----YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309 V I + + + + L + P + + E E Sbjct: 255 WADVRTAFEEDRVKSIEQVISSEFFQNKSTCQRYFLCELPDENEDGMFGTPQTE-----E 309 Query: 310 AIDDLYAPLIMGCDIAGEGGDK 331 + +G D A +G DK Sbjct: 310 EHTEKDWEYFLGVDSAYKGKDK 331 >gi|48697520|ref|YP_024878.1| gp33 TerL [Burkholderia phage BcepB1A] gi|47717490|gb|AAT37736.1| gp33 TerL [Burkholderia phage BcepB1A] Length = 532 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 58/198 (29%), Gaps = 11/198 (5%) Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGP-HNTHGMAVFNDEASGTPDIINKSILGFF 215 S I T + R + F DEA+ + Sbjct: 163 WNPHDHTHSSHMRVIIPDTGAVIRGEAGKNIGRGGRVSIQFVDEAAHLENAQAVDTALAA 222 Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275 T I S+ LN F + K + R D +++ ++ Sbjct: 223 TTNCR----IDISSVNGLNNPFAEK--RFSGRVKVKTMHWRDDPRKDDEWYKKQKQKF-- 274 Query: 276 DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTV 333 ++ V EI + IP +I+ A+ + + D+A EG D Sbjct: 275 NALVVAQEIDIDYSASAEGVLIPLEWIDAAIDADVKLGLTVTGQRFSSLDVADEGKDMNA 334 Query: 334 VVFRRGNIIEHIFDWSAK 351 R G +++ WS K Sbjct: 335 FGSRLGIRMDYAESWSGK 352 >gi|169825333|ref|YP_001691226.1| hypothetical protein M446_6968 [Methylobacterium sp. 4-46] gi|168199255|gb|ACA21201.1| hypothetical protein M446_6968 [Methylobacterium sp. 4-46] Length = 466 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 36/304 (11%), Positives = 82/304 (26%), Gaps = 44/304 (14%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-------- 108 E + C + + + GR GK+ + A + ++L + R Sbjct: 40 EAELEIFRACTGREVPPTTPMAEAHLPTGRRAGKSFVLALIAVYLAAFREYRGYLAPGER 99 Query: 109 -SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 +++ +A Q + ++ L+ P + + +E Sbjct: 100 ATVMVLAADRRQAR-VIFRYCKGLLAGSPLLANLIERETAEALDLANGVTIEI------- 151 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--------PD-IINKSILGFFTEL 218 + AV DE + PD I ++ + Sbjct: 152 ------------GTASVKTTRGYSLAAVLCDEIAFWETSEDSASPDYEILNALRPGMATI 199 Query: 219 NPNRFWIMTSNTRRLNGWFYDIF--NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLD 276 + S+ G +D F + ++ T + I Y D Sbjct: 200 PGSVLLCA-SSPYARKGALWDAFSRHFGQDNSDVLVWRAATRVMNPTVPERTIDEAYQRD 258 Query: 277 SDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAPLIMGCDIAGEGGDKTVV 334 A E +F + ++ +F+ + ++ + + D +G D + Sbjct: 259 PAAAAAEYGAEF-RSDIESFVSLDVVKACIDSGVMERLRHAGRHVAFVDPSGGSADSMTL 317 Query: 335 VFRR 338 Sbjct: 318 AIAH 321 >gi|262039737|ref|ZP_06013017.1| phage terminase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259042904|gb|EEW43895.1| phage terminase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 432 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 35/259 (13%), Positives = 69/259 (26%), Gaps = 26/259 (10%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGM----SIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 GRG KT A M I+C L+ + EV + + +P Sbjct: 29 GGRGSAKTRTFALMSAVKAYQAAESGLSGVILCAREFMNSLEESSMEEVKQAIRSVP--- 85 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 W + + + R + + + DE Sbjct: 86 -------------WLDDYFDIGEKYIRTKNRNVSYVFCGLRHNLDSIKSKARILVAWVDE 132 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTV 258 A K + E W+ N + +F P + +++ Sbjct: 133 AESVSATAWKKLRPTVRENGSE-IWVTW-NPEKDGSATDKLFRKNPPKSSMIVEMNYSDN 190 Query: 259 EGI-DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317 D E + LD G + + + + Y+ ++ + + Sbjct: 191 PWFPDVLEEERLEDLENLDYADYAWIWEGAYLENSDKQVLANKYVVQSFE-DDLWKKSER 249 Query: 318 LIMGCDIAGEGGDKTVVVF 336 L+ G D G D + ++ Sbjct: 250 LLFGADF-GFAKDPSTLIR 267 >gi|312116003|ref|YP_004013599.1| hypothetical protein Rvan_3315 [Rhodomicrobium vannielii ATCC 17100] gi|311221132|gb|ADP72500.1| hypothetical protein Rvan_3315 [Rhodomicrobium vannielii ATCC 17100] Length = 466 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 33/263 (12%), Positives = 67/263 (25%), Gaps = 32/263 (12%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSML 135 I AGRG GKT A + + +A + ++ + S L++ Sbjct: 61 ILAGRGAGKTRTGAEWVRACVCGPTPLSAGRYSRFALVAETAADARDVIVEGPSGLLAIH 120 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 P + + + A Sbjct: 121 PRGFRPKFEPSKRRLT------------------WPNGAVAMLYNATEPDQLRGPQHDAA 162 Query: 196 FNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253 + DE + + + R + T R + + Sbjct: 163 WCDELAKWRYARETWDMLQFGLRLGHDPRQIVT--TTPRPIAIIREFLGKEGHGVVLTRG 220 Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE-AMSREAID 312 T + + I R + + R EI + + +++ ++R Sbjct: 221 STYDNRANLAQNYFNTIVRSYEGTRLGRQEINAELLDDVAGALWTRSLLDQHRIARGTPL 280 Query: 313 DLYAPLIMGCDIAG---EGGDKT 332 + +++G D A GDKT Sbjct: 281 PRFDRVVVGIDPAARPSGAGDKT 303 >gi|119967835|ref|YP_950664.1| putative large terminase subunit [Staphylococcus phage PH15] gi|112790059|gb|ABI21779.1| putative large terminase subunit [Staphylococcus phage PH15] Length = 446 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 27/262 (10%), Positives = 74/262 (28%), Gaps = 24/262 (9%) Query: 72 NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131 + GRG GK++ + ++ + R M+ + + ++ L +++ ++ Sbjct: 21 TKDREKLNIVAKGGRGSGKSSDISIIIT-QLIMRYPMNAVVVRKADNTLATSVFEQIKWA 79 Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191 + H F+++ + + + I R + Sbjct: 80 IEEQKVSHLFKVKVSPM------------EITYVPRGNRIIFRGAQNPERLKSLKDSRFP 127 Query: 192 GMAVFNDE-ASGTPDIINKSILGFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--I 243 ++ +E A + +I + + N R W + Sbjct: 128 FSIMWIEELAEFKTEDEVTTITNSMLRGELDDGLFYKFFFSYNPPKRKQSWVNKKYETSF 187 Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303 ++ + I F + S + R E +G+ +P N ++ Sbjct: 188 QPDNTFVHHSTYLDNPFISKQFIQEAESAKERNEQRYRWEYMGEAIGSG---VVPFNNLQ 244 Query: 304 EAMSREAIDDLYAPLIMGCDIA 325 + + + + D Sbjct: 245 IEKIPDELYKSFDNIRNAVDFG 266 >gi|226315677|ref|YP_002775693.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi 29805] gi|226202054|gb|ACO38634.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi 29805] Length = 396 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 78/235 (33%), Gaps = 24/235 (10%) Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 + + V+ + N IF + RG GKT A + L + G + I + Sbjct: 3 LRRLPVYVDAYKEKPNAEIF--IYYSSRGTGKTYDIATVNLERKFSVDGGDTLAIRKKKN 60 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 + ++ E+ + LS+ R +F + + S+ K + E Sbjct: 61 KTTQSIHKEILELLSIHNLRKFFNISKAKIESK---------SLIFGKKRAFVF-----E 106 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 DT H ++ +EA+ + ++ E + SN + W Y Sbjct: 107 GGHDTRDLKSYAHFKDLWLEEANQFSADDIEMLIPTMREQGGRIYMS--SNPVPKSHWLY 164 Query: 239 DIFNIPLEDW--KRYQIDTRTVEGID----SGFHEGIISRYGLDSDVARIEILGQ 287 + ++ + R ++ + E Y + RIE+LG+ Sbjct: 165 KRYLSNQDNPAVCIIKSTYRDNPFLNGGDVQAWLEKQRLAYHGNDIGFRIEVLGE 219 >gi|300772208|ref|ZP_07082078.1| PBSX family phage terminase [Sphingobacterium spiritivorum ATCC 33861] gi|300760511|gb|EFK57337.1| PBSX family phage terminase [Sphingobacterium spiritivorum ATCC 33861] Length = 445 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 32/268 (11%), Positives = 75/268 (27%), Gaps = 40/268 (14%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 F ++ GRG GK+ + + ++ G ++ + ++ E+ + + Sbjct: 18 FIILVTGGRGSGKSFEVSTFVT-RLTFEAGHKVLYSRYTMKSADISVIPEIKGKIDLDGV 76 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 F ++S + +E++ + + S + T ++ Sbjct: 77 SQHFTVKSEDIVNEYSKSEIMFRGIKTSSGNQTANLKSI-------------EGLTTFVG 123 Query: 198 DEASGT-PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR------ 250 DE + ++ + I+ N + Y + + Sbjct: 124 DEMEEWQSEDDYDKLILSIRKKGIQNRVILIMNPSDDEHFVYKKYIQDTHRVEVIDGVEV 183 Query: 251 ----------YQIDTRTV-EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299 E + F I A + +FP+ + Sbjct: 184 QISTHPNVLHIHTSYLDNIENVSETFLAEIAEIKRKSEKQAHQAAIAEFPE------VHS 237 Query: 300 NYIEEAMSREAIDDLYAPLIMG--CDIA 325 + A R YA +++G DIA Sbjct: 238 EEYKRAYHRAFQRTKYAYVVIGRWADIA 265 >gi|315576663|gb|EFU88854.1| conserved hypothetical protein [Enterococcus faecalis TX0630] Length = 519 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 32/262 (12%), Positives = 61/262 (23%), Gaps = 21/262 (8%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS--KWLSMLP 136 + GK+ L++ + +WL + + + + Sbjct: 82 NIIVVTPSQYGKSWLSSRIAVWLADHN--RRCYVAGGKKDTTDIIMQHVTDTLQTVDESI 139 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 R E ++ G S + + Sbjct: 140 ARKLLEPVDKLERLQTGLSKRKISFSGGGSIEGISLGEHFKGNKSGNQAIGRGGD---YI 196 Query: 197 NDEASGTPDIINKSI--LGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254 DE++ + + F N SN G FYD K + Sbjct: 197 IDESAFVSNETYAELGRRNFANVDGKNYLSFEISNP-HNKGRFYDKLTQ-ENIPKGMLVV 254 Query: 255 TRTVEGIDSGFHEGIISR-----YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309 V I + + + + L + P + + E E Sbjct: 255 WADVRTAFEEDRVKSIEQVISSEFFQNKSTCQRYFLCELPDENEDGMFGTPQTE-----E 309 Query: 310 AIDDLYAPLIMGCDIAGEGGDK 331 + +G D A +G DK Sbjct: 310 EHTEKNWEYFLGVDSAYKGKDK 331 >gi|255975409|ref|ZP_05425995.1| predicted protein [Enterococcus faecalis T2] gi|255968281|gb|EET98903.1| predicted protein [Enterococcus faecalis T2] Length = 519 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 32/262 (12%), Positives = 61/262 (23%), Gaps = 21/262 (8%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS--KWLSMLP 136 + GK+ L++ + +WL + + + + Sbjct: 82 NIIVVTPSQYGKSWLSSRIAVWLADHN--RRCYVAGGKKDTTDIIMQHVTDTLQTVDESI 139 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 R E ++ G S + + Sbjct: 140 ARKLLEPVDKLERLQTGLSKRKISFSGGGSIEGISLGEHFKGNKSGNQAIGRGGD---YI 196 Query: 197 NDEASGTPDIINKSI--LGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254 DE++ + + F N SN G FYD K + Sbjct: 197 IDESAFVSNETYAELGRRNFANVDGKNYLSFEISNP-HNKGRFYDKLTQ-ENIPKGMLVV 254 Query: 255 TRTVEGIDSGFHEGIISR-----YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309 V I + + + + L + P + + E E Sbjct: 255 WADVRTAFEEDRVKSIEQVISSEFFQNKSTCQRYFLCELPDENEDGMFGTPQTE-----E 309 Query: 310 AIDDLYAPLIMGCDIAGEGGDK 331 + +G D A +G DK Sbjct: 310 EHTEKNWEYFLGVDSAYKGKDK 331 >gi|29376621|ref|NP_815775.1| hypothetical protein EF2112 [Enterococcus faecalis V583] gi|257090386|ref|ZP_05584747.1| predicted protein [Enterococcus faecalis CH188] gi|307276045|ref|ZP_07557178.1| hypothetical protein HMPREF9521_01673 [Enterococcus faecalis TX2134] gi|29344085|gb|AAO81845.1| hypothetical protein EF_2112 [Enterococcus faecalis V583] gi|256999198|gb|EEU85718.1| predicted protein [Enterococcus faecalis CH188] gi|306507375|gb|EFM76512.1| hypothetical protein HMPREF9521_01673 [Enterococcus faecalis TX2134] Length = 519 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 32/262 (12%), Positives = 61/262 (23%), Gaps = 21/262 (8%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS--KWLSMLP 136 + GK+ L++ + +WL + + + + Sbjct: 82 NIIVVTPSQYGKSWLSSRIAVWLADHN--RRCYVAGGKKDTTDIIMQHVTDTLQTVDESI 139 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 R E ++ G S + + Sbjct: 140 ARKLLEPVDKLERLQTGLSKRKISFSGGGSIEGISLGEHFKGNKSGNQAIGRGGD---YI 196 Query: 197 NDEASGTPDIINKSI--LGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254 DE++ + + F N SN G FYD K + Sbjct: 197 IDESAFVSNETYAELGRRNFANVDGKNYLSFEISNP-HNKGRFYDKLTQ-ENIPKGMLVV 254 Query: 255 TRTVEGIDSGFHEGIISR-----YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309 V I + + + + L + P + + E E Sbjct: 255 WADVRTAFEEDRVKSIEQVISSEFFQNKSTCQRYFLCELPDENEDGMFGTPQTE-----E 309 Query: 310 AIDDLYAPLIMGCDIAGEGGDK 331 + +G D A +G DK Sbjct: 310 EHTEKNWEYFLGVDSAYKGKDK 331 >gi|262040826|ref|ZP_06014054.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041848|gb|EEW42891.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 434 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 40/277 (14%), Positives = 82/277 (29%), Gaps = 33/277 (11%) Query: 61 AVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119 A+ + +K A AG G GKT + + + P ++ A + Q Sbjct: 2 AIAPTLNIPQAKFLAMQYKFKAYVAGFGSGKTWVGCGGICKGMWEHPKINQGYFAPTYPQ 61 Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 +++ + V + + E ++ + Y T S E Sbjct: 62 IRDIFYPTVEEVAHDWG-------------LNVKINEGNKEVHFYAGRQYRGTTICRSME 108 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFT-ELNPNRFWIMTSNTRRLN 234 +P DE P + + I+ ++ R I + T Sbjct: 109 KP---QTIVGFKIGNALIDELDVMPAKKAQLAWRKIIARMRYKVPGLRNGIDVTTTPEGF 165 Query: 235 GWFYDIFNIPLED-------WKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILG 286 + Y F + D + Q T E + + + ++ Y ++ + + G Sbjct: 166 KFVYQQFAKAVRDKPSLSTLYGLVQASTFDNEKNLPADYIPSLMESY--PPELIKAYLRG 223 Query: 287 QFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323 QF + + + + PL +G D Sbjct: 224 QFTNLTSGTIYHQ-FDRQLNNCHEEEQPGEPLYIGMD 259 >gi|297520464|ref|ZP_06938850.1| hypothetical protein EcolOP_22727 [Escherichia coli OP50] Length = 313 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 39/122 (31%), Gaps = 5/122 (4%) Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290 + F + + R D ++ + + V E+ + Sbjct: 5 NGMANPFAQKRHGGK--IPVFTFHWRDDPRKDEEWYRRECEKI-DNPVVVAQELDLNYSA 61 Query: 291 QEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348 IP +++ A+ + D+A EG DK R G ++E++ +W Sbjct: 62 SAEGVLIPSEWVQAAVDAHIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREW 121 Query: 349 SA 350 S Sbjct: 122 SG 123 >gi|228904911|ref|ZP_04068965.1| hypothetical protein bthur0014_60350 [Bacillus thuringiensis IBL 4222] gi|228854925|gb|EEM99529.1| hypothetical protein bthur0014_60350 [Bacillus thuringiensis IBL 4222] Length = 954 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 32/267 (11%), Positives = 62/267 (23%), Gaps = 49/267 (18%) Query: 91 TTLNAWMMLWLISTRPGMS-------IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 T MLW+ T G + + + Q + ++ ++ ++ P Sbjct: 440 TWTMCAHMLWVAFTCNGGTRMAKGAACVVATPYDNQAR-LIFDQLKTFIDNNPVLQESIK 498 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + T ++ DE Sbjct: 499 SITK----------NPYVIEFKNGSVIRL-FTAGTRSGSEGGSLRGQRADWLYMDEVDYM 547 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL------------------ 245 D +SI E ++ S G FY Sbjct: 548 GDKDFESIFAIVNEAPDRIGCMIASTPTGRRGMFYKTCTQMKLNQDVKMNKNNVYDMRSY 607 Query: 246 -----EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 E W + T + + E+L +F + V + Sbjct: 608 NRTLSEGWAEFYFPTMVNPEWGPKMERELRKLFSE--AAYEHEVLAEFGTEMVG-VFNKD 664 Query: 301 YIEEA----MSREAIDDLYAPLIMGCD 323 Y++EA + P+ +G D Sbjct: 665 YVDEASSIGYNYTTSPTHDGPIAIGID 691 >gi|307280628|ref|ZP_07561676.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis TX0860] gi|306503994|gb|EFM73211.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis TX0860] Length = 425 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 33/267 (12%), Positives = 81/267 (30%), Gaps = 11/267 (4%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 N I GRG GK++ A ++ + R ++ + I + L+ +++ ++ + Sbjct: 25 NSDILNIICKGGRGSGKSSDIA-HIITQLLMRYAVNAVGIRYVDNTLEQSIYEQMKWAIE 83 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 H F+ L + G + + + ++ Sbjct: 84 QQGVTHLFKFNKSPLRITYIPRGNYMIFRGAQNPERIKSLKDSRFPFAIGWIEELGEFKT 143 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN--IPLEDWKRY 251 DE + + + + G +F+ + +R W + ++ + Sbjct: 144 ---EDEVTTITNSL---LRGELGNGLFYKFFFSYNPPKRRQSWVNKKYESSFQPDNTFVH 197 Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311 + I F + + + + AR E G+ + +E+ + + Sbjct: 198 HSTYKDNPFISREFLKEVEAARDRNLLRARWEYDGE-AIGSGVVPFSNLKVEKGCITDEM 256 Query: 312 DDLYAPLIMGCDIAGEGGDKTVVVFRR 338 + + G D G D V Sbjct: 257 VANFDNIRNGLDF-GYATDPLAFVRWH 282 >gi|209918626|ref|YP_002292710.1| hypothetical protein ECSE_1435 [Escherichia coli SE11] gi|209911885|dbj|BAG76959.1| conserved hypothetical protein [Escherichia coli SE11] Length = 436 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 40/280 (14%), Positives = 84/280 (30%), Gaps = 33/280 (11%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 M+ + + K A AG G GKT + + I PG++ A + Sbjct: 1 MMKMISPTLNVPQARFLSMPHKFKAYIAGFGSGKTWVGCGGICKGIWEHPGINQGYFAPT 60 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 Q+++ + V + + + E ++ + Y T Sbjct: 61 YPQIRDIFYPTVEEVAADWG-------------LNVKINEGNKEVHFYYGRQYRGTTICR 107 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL-----NPNRFWIMTSNTR 231 S E+P DE P ++ + R I + T Sbjct: 108 SMEKP---QTIVGFKIGNALVDELDILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTP 164 Query: 232 RLNGWFYDIFNIPLED-------WKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIE 283 + Y+ F + + + Q T E + + + ++ Y ++ + Sbjct: 165 EGFKFVYEQFVKAVREKTELASLYGLVQASTFDNEKNLPADYIPSLLESY--PPELIKAY 222 Query: 284 ILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323 + GQF + + + E ++ P+ +G D Sbjct: 223 LRGQFTNLTSGTVYHQ-FDRKLNNCEEVEQPGEPIYIGMD 261 >gi|117623621|ref|YP_852534.1| putative phage terminase [Escherichia coli APEC O1] gi|331672908|ref|ZP_08373694.1| putative phage terminase [Escherichia coli TA280] gi|115512745|gb|ABJ00820.1| putative phage terminase [Escherichia coli APEC O1] gi|309701027|emb|CBJ00325.1| phage protein [Escherichia coli ETEC H10407] gi|331070129|gb|EGI41498.1| putative phage terminase [Escherichia coli TA280] Length = 436 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 40/280 (14%), Positives = 84/280 (30%), Gaps = 33/280 (11%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 M+ + + K A AG G GKT + + I PG++ A + Sbjct: 1 MMKMISPTLNVPQARFLSMPHKFKAYIAGFGSGKTWVGCGGICKGIWEHPGINQGYFAPT 60 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 Q+++ + V + + + E ++ + Y T Sbjct: 61 YPQIRDIFYPTVEEVAADWG-------------LNVKINEGNKEVHFYYGRQYRGTTICR 107 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL-----NPNRFWIMTSNTR 231 S E+P DE P ++ + R I + T Sbjct: 108 SMEKP---QTIVGFKIGNALVDELDILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTP 164 Query: 232 RLNGWFYDIFNIPLED-------WKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIE 283 + Y+ F + + + Q T E + + + ++ Y ++ + Sbjct: 165 EGFKFVYEQFVKAVREKTELASLYGLVQASTFDNEKNLPADYIPSLLESY--PPELIKAY 222 Query: 284 ILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323 + GQF + + + E ++ P+ +G D Sbjct: 223 LRGQFTNLTSGTVYHQ-FDRKLNNCEEVEQPGEPIYIGMD 261 >gi|116623201|ref|YP_825357.1| hypothetical protein Acid_4108 [Candidatus Solibacter usitatus Ellin6076] gi|116226363|gb|ABJ85072.1| conserved hypothetical protein [Candidatus Solibacter usitatus Ellin6076] Length = 436 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 35/265 (13%), Positives = 71/265 (26%), Gaps = 27/265 (10%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GK+ + L G + A + L++ A + + L Sbjct: 40 GSGKSQALCQEAIRLSYMNQGRLGLLGAPTYPMLRDATQAALLEILQK------------ 87 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + E + + + T D F T+ DE + T Sbjct: 88 ----NEIPYEHNKAENLL---VFKDTGSRILFRPVDEFERLRGTNLAWFGLDELTYTQQE 140 Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRYQIDTRTVEGIDSGF 265 + G + + T + W Y F P+ + Q + + Sbjct: 141 AWLRLEGRLRDPKATQLCGFAVWTPKGFDWVYRKFITDPVPGYGAIQARPFENRHLLAKV 200 Query: 266 HEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI 324 + D + E+LG + + + + + Y PL+ D Sbjct: 201 GDFYDRLKDSYDERFYQQEVLGNYLSMQGGRVY-GAFDRTTHIQSVRPNPYLPLLWALD- 258 Query: 325 AGEGGD--KTVVVFRRGNIIEHIFD 347 D +V+V + + + Sbjct: 259 --FNVDPMSSVIVQVVKGEVRVLDE 281 >gi|331677171|ref|ZP_08377867.1| putative phage terminase [Escherichia coli H591] gi|331075860|gb|EGI47158.1| putative phage terminase [Escherichia coli H591] Length = 436 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 40/280 (14%), Positives = 85/280 (30%), Gaps = 33/280 (11%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 M+ + + K A AG G GKT + + I PG++ A + Sbjct: 1 MMKMISPTLNVPQARFLSMPHKFKAYIAGFGSGKTWVGCGGICKGIWEHPGINQGYFAPT 60 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 Q+++ + V + + + E ++ + Y T Sbjct: 61 YPQIRDIFYPTVEEVAADWG-------------LNVKINEGNKEVHFYYGRQYRGTTICR 107 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL-----NPNRFWIMTSNTR 231 S E+P DE P ++ + R I + T Sbjct: 108 SMEKP---QTIVGFKIGNALVDELDILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTP 164 Query: 232 RLNGWFYDIFNIPLED-------WKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIE 283 + Y+ F + + + Q T E + + + ++ Y ++ + Sbjct: 165 EGFKFVYEQFVKAVREKTELASLYGLVQASTFDNEKNLPADYIPSLLESY--PPELIKAY 222 Query: 284 ILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323 +LG+F + + + E ++ P+ +G D Sbjct: 223 LLGRFTNLTSGTVYHQ-FDRKLNNCEEVEQPGEPIYIGMD 261 >gi|309812665|ref|ZP_07706409.1| putative phage terminase, large subunit [Dermacoccus sp. Ellin185] gi|308433360|gb|EFP57248.1| putative phage terminase, large subunit [Dermacoccus sp. Ellin185] Length = 488 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 42/320 (13%), Positives = 86/320 (26%), Gaps = 55/320 (17%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 WQ E ++ I +S R GKT L A + + + P + + Sbjct: 54 RPWQREIVD----------GAFAAGIRTALVSLPRANGKTALAAALAVAELFAGPPSAEV 103 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + S+ + N + + + P EL E++ + Sbjct: 104 LVVASDQRQANIALRMAKRMIELSP-------------------ELAERAQIYADRIAVP 144 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 P H + DE + + +++ + P + S Sbjct: 145 ENDATMIALPADPGALHGWDPSLLVVDELHVVSEAVWEAVT-SMSGKRPESLTLAISTPS 203 Query: 232 RLNG-----------------WFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG---IIS 271 +F F P + F + Sbjct: 204 TSPDCVMWSLVEHGRAGTDPAFFLREFAAPDGCATDDEAAWAAANPALGDFLSADGLAAA 263 Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDK 331 R L V R LGQ+ + ++P + + + + + +++ D + G D Sbjct: 264 RRTLREPVFRQLRLGQWVTGS-DAWLPWGAWDALAAPDVAVERGSRVVLAFDGSASG-DS 321 Query: 332 TVVV---FRRGNIIEHIFDW 348 T +V + + W Sbjct: 322 TALVGCTVSEQPHVFVVGLW 341 >gi|70727357|ref|YP_254273.1| putative phage terminase large subunit [Staphylococcus haemolyticus JCSC1435] gi|68448083|dbj|BAE05667.1| putative phage terminase large subunit [Staphylococcus haemolyticus JCSC1435] Length = 421 Score = 67.7 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 32/275 (11%), Positives = 78/275 (28%), Gaps = 25/275 (9%) Query: 72 NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131 NP I GRG GK++ + ++ + R M+ + + ++ L +++ ++ Sbjct: 22 TKNPDILNVVAKGGRGSGKSSDISIIIT-QLIMRYPMNAVVVRKTDNTLATSVFEQIKWA 80 Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191 + H F+++ + + + I R + Sbjct: 81 IEEQKVSHLFKIKVSPM------------EITFIPRGNRIIFRGAQNPERLKSLKDSRFP 128 Query: 192 GMAVFNDEAS--GTPDIINKSILGFFTELNPNRFWIMT---SNTRRLNGWFYDI---FNI 243 ++ +E T D + + N + + + + Sbjct: 129 FSIMWIEELGEFKTEDEVTTITNSMLRGELDEGLFYKFYFSYNPAKRKQHWANKKYETSF 188 Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303 ++ + I F + S + R E LG+ +P N + Sbjct: 189 QPDNTFVHHSTYLNNPFISKQFIQEAESAKQRNELRYRWEYLGEAIGSG---VVPFNNLR 245 Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338 + + + + + D G D V Sbjct: 246 IEKIPDDLYNSFDNIRNAVDF-GYATDPLAFVRWH 279 >gi|146277121|ref|YP_001167280.1| hypothetical protein Rsph17025_1074 [Rhodobacter sphaeroides ATCC 17025] gi|145555362|gb|ABP69975.1| protein of unknown function DUF264 [Rhodobacter sphaeroides ATCC 17025] Length = 414 Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 33/267 (12%), Positives = 64/267 (23%), Gaps = 35/267 (13%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPG------MSIICIANSETQLKNTLWAEVSKWLSM 134 + GRG GKT A + + + + + Q + + S L+ Sbjct: 21 VVMGGRGAGKTRAGAEWVRSEVEGPRPGDPGRSRHVALVGETVDQTREVMVFGESGLLAC 80 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 P E ++ A Sbjct: 81 SPPDRRPEWEAGRKRL------------------VWPNGAVAQVFSAHDPESLRGPQFDA 122 Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252 + DE + + + + R + T R I + P + Sbjct: 123 AWADELAKWARAEEAWDMLQFSLRLGDQPRQVVT--TTPRNVPVLRQILDNPST-VVTHA 179 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + F + + +RY + R E+ G + IE R Sbjct: 180 PTEANRAYLAKSFLDEVHARYDGT-RLGRQELEGLLLEDVEGALWTTVRIEAL--RAEEA 236 Query: 313 DLYAPLIMGCDIAGEG---GDKTVVVF 336 +++ D G D+ +V Sbjct: 237 GPLDRIVVAVDPPVTGHEASDECGIVV 263 >gi|284007216|emb|CBA72504.1| phage terminase large subunit [Arsenophonus nasoniae] Length = 441 Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 45/267 (16%), Positives = 72/267 (26%), Gaps = 30/267 (11%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 GR GKT L + + + + I N L EV + + F+ Sbjct: 30 KCGRRFGKTALIQILTASVTTQFFYRHGMKIPN--AGLVGIFTPEVKQQIE------IFD 81 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 L+P + + +++ + + DEA+ Sbjct: 82 TVEEYLYPLITRKARNQGLIRLENGAKIDFWALNDNKLAG-----RGREYNRILIDEAAF 136 Query: 203 TPDIIN------KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256 T + K+I T N +FY I N P + T Sbjct: 137 TKNKEMLEEVWPKAIKPTLLTTKGGADVFSTPNGIDDENFFYAICNDPSLGFNVLHAPTA 196 Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN--YIEEAMSREAIDDL 314 I + D V + E +F + N +E Sbjct: 197 KNPFIPQSELDKEKED--NDPRVYQQEFEAEFIDWSDAALLDVNKMLVE---GEPVEPPT 251 Query: 315 YAPLIMGC-DIAGEGG---DKTVVVFR 337 L+ D A +GG D T VVF Sbjct: 252 TCDLVFAVMDTALKGGTENDGTGVVFF 278 >gi|75758280|ref|ZP_00738405.1| Hypothetical protein RBTH_06375 [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74494334|gb|EAO57425.1| Hypothetical protein RBTH_06375 [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 660 Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 32/267 (11%), Positives = 62/267 (23%), Gaps = 49/267 (18%) Query: 91 TTLNAWMMLWLISTRPGMS-------IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 T MLW+ T G + + + Q + ++ ++ ++ P Sbjct: 146 TWTMCAHMLWVAFTCNGGTRMAKGAACVVATPYDNQAR-LIFDQLKTFIDNNPVLQESIK 204 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + T ++ DE Sbjct: 205 SITK----------NPYVIEFKNGSVIRL-FTAGTRSGSEGGSLRGQRADWLYMDEVDYM 253 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL------------------ 245 D +SI E ++ S G FY Sbjct: 254 GDKDFESIFAIVNEAPDRIGCMIASTPTGRRGMFYKTCTQMKLNQDVKMNKNNVYDMRSY 313 Query: 246 -----EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 E W + T + + E+L +F + V + Sbjct: 314 NRTLSEGWAEFYFPTMVNPEWGPKMERELRKLFSE--AAYEHEVLAEFGTEMVG-VFNKD 370 Query: 301 YIEEA----MSREAIDDLYAPLIMGCD 323 Y++EA + P+ +G D Sbjct: 371 YVDEASSIGYNYTTSPTHDGPIAIGID 397 >gi|90423308|ref|YP_531678.1| hypothetical protein RPC_1800 [Rhodopseudomonas palustris BisB18] gi|90105322|gb|ABD87359.1| protein of unknown function DUF264 [Rhodopseudomonas palustris BisB18] Length = 423 Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 36/294 (12%), Positives = 73/294 (24%), Gaps = 41/294 (13%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCA------ISAGRGIGKTTLNAWMMLWLISTRPG---- 107 F+ A + P A + GRG GKT A + Sbjct: 8 FLNAQWDVFAHDHQRPPPLAPNGAPWLSWLLIGGRGAGKTRAGAEWIRAQALGLAPFAER 67 Query: 108 --MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 I + +E ++ + VS L++ P Sbjct: 68 AVSRIALVGETEHDVREVMIEGVSGLLAVHPRHERPSWMPSRKRLE-------------- 113 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRF 223 D ++DE + + + R Sbjct: 114 ----WSNGAVAQAFSADDPESLRGPQFACAWSDEMAKWRYAEAAFDMLQFGLRLGPQPRQ 169 Query: 224 WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283 + + T R + P + F +G+++RY + R E Sbjct: 170 --LITTTPRPTALLKRLLGDPA-CVTTRAPTRANAFNLAPTFLQGVMARYQGT-RLGRQE 225 Query: 284 ILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVV 334 + G+ + + +E +A +++ D +G+ D + Sbjct: 226 LDGEIIEDRADALWSRALLESCRVDDAP--ALTRIVVAIDPPASSGKRADACGI 277 >gi|293414703|ref|ZP_06657352.1| hypothetical protein ECDG_01266 [Escherichia coli B185] gi|291434761|gb|EFF07734.1| hypothetical protein ECDG_01266 [Escherichia coli B185] Length = 442 Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 33/229 (14%), Positives = 68/229 (29%), Gaps = 27/229 (11%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL---KNTLWAEVSKWLSMLPH 137 A+ GR GKT + + + R + QL + ++ + + Sbjct: 28 AVCCGRRWGKTVMLVNIATSYATRR------FAVPTTGQLIAGRVGIFTAQYRQYQEIWD 81 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 +Q L E+ + + + T + + AV Sbjct: 82 EICAALQPL-----ILSQSKNEKRIILRNGGRIDFWVTD-----NNKLAGRGRKYHAVLI 131 Query: 198 DEASG------TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY 251 DEA+ +I ++I + + T N + +FY I + + + Sbjct: 132 DEAAFTKSPEMLEEIWPRAIRPTLVDYRGCAWVFSTPNGIDESNFFYAICHDESLGFVMH 191 Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 T + I E + D V + E L +F + + + Sbjct: 192 HAPTSSNPYIPKEELEETEKKS--DPRVWQQEYLAEFVDWSKDALLDVD 238 >gi|229162517|ref|ZP_04290478.1| DNA packaging protein Gp17 [Bacillus cereus R309803] gi|228620996|gb|EEK77861.1| DNA packaging protein Gp17 [Bacillus cereus R309803] Length = 525 Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 59/227 (25%), Gaps = 19/227 (8%) Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 F I+ R IG +T++ + LW+ RP + + ++ + +L+ Sbjct: 43 QQKQFIEEMERFNV-IAKARQIGFSTMSLALCLWMSMNRPRTNYMIVSYKQES-STSLFD 100 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 ++ LPH + M D+ Sbjct: 101 KLKMMYDDLPHDK---------FKFPKDVQNNRGQMKFDNGSSITLAT------AGGKDV 145 Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246 T + E + + + + ++ T + +F + Sbjct: 146 GRGTTYEYILLSEFAFYENQESILLSAEQALAKSKTSKLVIETTSNGFNPYQKLFMNAYK 205 Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293 + S + + Y +++ G+ ++ Sbjct: 206 G--NSKYKAFFFPFYSSSYAKQFKDDYDEAEAWYKLDNKGKRLTKDD 250 >gi|304321166|ref|YP_003854809.1| Phage DNA Packaging Protein [Parvularcula bermudensis HTCC2503] gi|303300068|gb|ADM09667.1| Phage DNA Packaging Protein [Parvularcula bermudensis HTCC2503] Length = 425 Score = 67.3 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 37/286 (12%), Positives = 72/286 (25%), Gaps = 30/286 (10%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 + + + N + GRG GKT A + I+ I + Sbjct: 20 KRALHEWKFYARQDQWNPPGDWTTWLVLGGRGAGKTRTGAEWIAAQIAAGR-RRIALVGE 78 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 + + + S ++ +S Sbjct: 79 TYEDAREVMIDGPSGLCAIGTADSRPHYESSRHRL------------------LWPCGAE 120 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRL 233 D G A ++DE + P+ ++ + R + T R Sbjct: 121 AHIFSADDPDGLRGHQFEAAWSDELAKWRQPEAAWANLQLGLRLGDRPRQIVT--TTPRP 178 Query: 234 NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293 + N + T + F + Y + R E+ G+ Sbjct: 179 FPLLRLLMNDDRT-VVTHAATTANRAALAETFLTEVTRTYQGT-RLGRQELEGEVLDDRE 236 Query: 294 NNFIPHNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVVVF 336 + IE SR A +++ D AG D+ ++ Sbjct: 237 GALWSWSMIEA--SRLAGAPRCDRVVVAVDPPVTAGPDADECGIIV 280 >gi|262194129|ref|YP_003265338.1| hypothetical protein Hoch_0830 [Haliangium ochraceum DSM 14365] gi|262077476|gb|ACY13445.1| protein of unknown function DUF264 [Haliangium ochraceum DSM 14365] Length = 503 Score = 67.3 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 40/367 (10%), Positives = 92/367 (25%), Gaps = 86/367 (23%) Query: 9 QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQP---HRWQLEFMEAVDVH 65 +K EQEL + A WG + +P R+Q+ F+ Sbjct: 32 KKNEQELSD--WLAN-------------EWGFLAGLAKFDDEPVTLERYQMAFLRN---- 72 Query: 66 CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW 125 + F+ ++ R +G + + A L R + + ++ + K + Sbjct: 73 ---------RSRFR-WVTKSRQVGFSFVFALEALARCHLRDKHTAVFVSYNLEDAKEKVL 122 Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185 + LP + + + + +S Sbjct: 123 -IARQIHEELPLAYQKRL-----------VVDSKTELAFESNSSNKRLSRIISAPSKAPR 170 Query: 186 GPHNTHGMAVFNDEASG--TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243 G V+ DE + + + S G F++I Sbjct: 171 GKKGD----VYLDELAHYVLDREVYTGSTALILRSHGQLSSC--STPLGRRGIFWEISTE 224 Query: 244 PLEDWKRYQID---TRTVEGIDSGFHEGIISRYGLDSDV--------------------- 279 L + + D + + ++ Sbjct: 225 ELRKYPHHTRDEVPWWRCRFFCLDIDRAMREAPHMPTEERVAAFGTQAIVQQLDSLPLED 284 Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREA--------IDDLYAPLIMGCDIAGEGGDK 331 + E F + ++ P+ I S + + + ++ G D+ D+ Sbjct: 285 FQQEFECSFVDESY-SYYPYELILPCTSEDLVPAGDFTDLPEPEGRIVAGFDVGRT-RDR 342 Query: 332 TVVVFRR 338 + + Sbjct: 343 SELAVFE 349 >gi|315144732|gb|EFT88748.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis TX2141] Length = 425 Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 34/267 (12%), Positives = 81/267 (30%), Gaps = 11/267 (4%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 N I GRG GK++ A ++ + R ++ + I + L+ +++ ++ + Sbjct: 25 NSDILNIVCKGGRGSGKSSDIA-HIITQLLMRYAVNAVGIRYVDNTLEQSIYEQMKWAIE 83 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 H F+ L + G + + + ++ Sbjct: 84 QQGVTHLFKFNKSPLRITYIPRGNYMIFRGAQNPERIKSLKDSRFPFAIGWIEELGEFKT 143 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN--IPLEDWKRY 251 DE + + + + G +F+ + +R W + E+ + Sbjct: 144 ---EDEVTTITNSL---LRGELGNGLFYKFFFSYNPPKRRQSWVNKKYESSFQPENTFVH 197 Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311 + I F + + + + AR E G+ + +E+ + + Sbjct: 198 HSTYKDNPFISREFLKEVEAARDRNLLRARWEYDGE-AIGSGVVPFSNLKVEKGCITDEM 256 Query: 312 DDLYAPLIMGCDIAGEGGDKTVVVFRR 338 + + G D G D V Sbjct: 257 VANFDNIRNGLDF-GYATDPLAFVRWH 282 >gi|167856075|ref|ZP_02478817.1| phage terminase, large subunit, PBSX family: protein [Haemophilus parasuis 29755] gi|167852772|gb|EDS24044.1| phage terminase, large subunit, PBSX family: protein [Haemophilus parasuis 29755] Length = 321 Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 23/192 (11%), Positives = 48/192 (25%), Gaps = 18/192 (9%) Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222 ++ R + + + DEA ++ + +L E Sbjct: 10 KYVRTKCGRISYIFTGLRHNLDSIKSKARILLAWIDEAESVSEMAWRKLLPTVRESGSE- 68 Query: 223 FWIMTSNTRRLNGWFYDIFNIPLEDWKRY-QIDTRTVEGIDSGFHEGIISRYGL-DSDVA 280 W+ N + F ++ +++ + + D Sbjct: 69 IWLTW-NPEKKGSATDLRFRQYQDESMAIVEMNYSDNPWFPDVLEQERLRDKARLDDATY 127 Query: 281 RIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGN 340 R G + ++ Y E + + + D P G D G D T Sbjct: 128 RWIWEGDYLEESEAQVFRGKYQE--LEFKPLPDFEGPYH-GLDF-GFAQDPTAA------ 177 Query: 341 IIEHIFDWSAKL 352 + W K Sbjct: 178 ----VKCWVFKD 185 >gi|194473846|ref|YP_002048670.1| DNA maturase B [Morganella phage MmP1] gi|194307067|gb|ACF42049.1| DNA maturase B [Morganella phage MmP1] Length = 586 Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 39/275 (14%), Positives = 72/275 (26%), Gaps = 37/275 (13%) Query: 24 CVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS 83 F F+ F W P P R Q++ V NP K + Sbjct: 15 LKADFIAFL--FVLWKALNLP-----PPTRCQIDMARTVA----------NPKNKKFILQ 57 Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 A RGIGK+ + ++WL+ P + ++ ++ S+ + + + +LP + Sbjct: 58 AFRGIGKSFILCAYVVWLLWNNPQLKVLIVSASKERADANSIF-IKNIIELLPFLSEMKP 116 Query: 144 QSLSLHPSGWYAELL-EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 + + L K IT + N G Sbjct: 117 RQGQRDSVISFDVGLATPDHSPSVKSVGITGQLTG----SRADIILADDVEIPSNSATQG 172 Query: 203 TPDIINKSIL--GFFTELNPNRFWIMTSNT------------RRLNGWFYDIFNIPLEDW 248 T + + + + I R P Sbjct: 173 TREKLWTQVQEFAALLKPLDTSRVIYLGTPQTEMTLYKELEDNRGYSTIIWPAYYPRNKE 232 Query: 249 KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283 + R + + + E G +D R + Sbjct: 233 EAMHYGDRLAPMLKAEYDETPELLAGTPTDPVRFD 267 >gi|331662794|ref|ZP_08363717.1| putative phage terminase [Escherichia coli TA143] gi|331061216|gb|EGI33180.1| putative phage terminase [Escherichia coli TA143] Length = 407 Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 41/295 (13%), Positives = 87/295 (29%), Gaps = 34/295 (11%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 M+ + + K A AG G GKT + + PG++ A + Sbjct: 1 MMKMISPTLNVPQARFLSMPHKFKAYIAGFGSGKTWVGCGGICKGTWEHPGINQGYFAPT 60 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 Q+++ + V + + + E ++ + Y T Sbjct: 61 YPQIRDIFYPTVEEVAADWG-------------LNVKINEGNKEVHFYYGRQYRGTTICR 107 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL-----NPNRFWIMTSNTR 231 S E+P DE P ++ + R I + T Sbjct: 108 SMEKP---QTIVGFKIGNALVDELDILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTP 164 Query: 232 RLNGWFYDIFNIPLED-------WKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIE 283 + Y+ F + + + Q T E + + + ++ Y ++ + Sbjct: 165 EGFKFVYEQFVKAVREKTELASLYGLVQASTFDNEKNLPADYIPSLLESY--PPELIKAY 222 Query: 284 ILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338 + GQF + + + E ++ P+ +G D G ++ R Sbjct: 223 LRGQFTNLTSGTVYHQ-FDRKLNNCEEVEQPGEPIYIGMDF-NVGKMAGIIHVLR 275 >gi|282601251|ref|ZP_05981204.2| phage terminase, large subunit, PBSX family [Subdoligranulum variabile DSM 15176] gi|282569696|gb|EFB75231.1| phage terminase, large subunit, PBSX family [Subdoligranulum variabile DSM 15176] Length = 414 Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 27/253 (10%), Positives = 63/253 (24%), Gaps = 19/253 (7%) Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 T+ + GRG GK++ + +++ + P + + L+N++++++ + Sbjct: 23 GTVQEVVAKGGRGSGKSSYLSLELVYQLLRHPNCHAVVLRKVAGTLRNSVYSQIVWAIGA 82 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 L +F + I + + Sbjct: 83 LGCSGYFRCTVSPM------------ECTYLPTGQKILFFGLDDAGKLKSLKVPFGAVGL 130 Query: 195 VFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252 + +E P+ + + + W P + Sbjct: 131 CWFEELDQFDGPEEVRSVEQSILRGGDWTLTLKSFNPPAMARSWVNRYVLEPRPGKLVHH 190 Query: 253 IDTRTVEG--IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310 R + + F + D R E G+ F E + Sbjct: 191 STYRDLPRQFLGERFWADAEHLRKTNPDAYRHEYGGEVVGSGAAVFDNLTLREVP---DE 247 Query: 311 IDDLYAPLIMGCD 323 + L G D Sbjct: 248 EIASFDRLYHGVD 260 >gi|323937704|gb|EGB33972.1| terminase [Escherichia coli E1520] Length = 433 Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 83/264 (31%), Gaps = 33/264 (12%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 S P FK A AG G GKT + + I PG++ A + Q+++ + V + Sbjct: 15 SMPHKFK-AYIAGFGSGKTWVGCGGICKGIWEHPGINQGYFAPTYPQIRDIFYPTVEEVA 73 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 + + E ++ + Y T S E+P Sbjct: 74 ADWG-------------LNVKINEGNKEVHFYYGRQYRGTTICRSMEKP---QTIVGFKI 117 Query: 193 MAVFNDEASGTPDIINKSILGFFTEL-----NPNRFWIMTSNTRRLNGWFYDIFNIPLED 247 DE P ++ + R I + T + Y+ F + + Sbjct: 118 GNALVDELDILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTPEGFKFVYEQFVKAVRE 177 Query: 248 -------WKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299 + Q T E + + + ++ Y ++ + + GQF Sbjct: 178 KTELASLYGLVQASTFDNEKNLPADYIPSLLESY--PPELIKAYLRGQFTNLTSGTVYHQ 235 Query: 300 NYIEEAMSREAIDDLYAPLIMGCD 323 + + + E ++ P+ +G D Sbjct: 236 -FDRKLNNCEEVEQPGEPIYIGMD 258 >gi|301025610|ref|ZP_07189133.1| phage terminase, large subunit, PBSX family [Escherichia coli MS 69-1] gi|300395930|gb|EFJ79468.1| phage terminase, large subunit, PBSX family [Escherichia coli MS 69-1] Length = 435 Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 83/264 (31%), Gaps = 33/264 (12%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 S P FK A AG G GKT + + I PG++ A + Q+++ + V + Sbjct: 17 SMPHKFK-AYIAGFGSGKTWVGCGGICKGIWEHPGINQGYFAPTYPQIRDIFYPTVEEVA 75 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 + + E ++ + Y T S E+P Sbjct: 76 ADWG-------------LNVKINEGNKEVHFYYGRQYRGTTICRSMEKP---QTIVGFKI 119 Query: 193 MAVFNDEASGTPDIINKSILGFFTEL-----NPNRFWIMTSNTRRLNGWFYDIFNIPLED 247 DE P ++ + R I + T + Y+ F + + Sbjct: 120 GNALVDELDILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTPEGFKFVYEQFVKAVRE 179 Query: 248 -------WKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299 + Q T E + + + ++ Y ++ + + GQF Sbjct: 180 KTELASLYGLVQASTFDNEKNLPADYIPSLLESY--PPELIKAYLRGQFTNLTSGTVYHQ 237 Query: 300 NYIEEAMSREAIDDLYAPLIMGCD 323 + + + E ++ P+ +G D Sbjct: 238 -FDRKLNNCEEVEQPGEPIYIGMD 260 >gi|284921252|emb|CBG34318.1| phage protein [Escherichia coli 042] gi|323942326|gb|EGB38497.1| terminase [Escherichia coli E482] Length = 433 Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 83/264 (31%), Gaps = 33/264 (12%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 S P FK A AG G GKT + + I PG++ A + Q+++ + V + Sbjct: 15 SMPHKFK-AYIAGFGSGKTWVGCGGICKGIWEHPGINQGYFAPTYPQIRDIFYPTVEEVA 73 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 + + E ++ + Y T S E+P Sbjct: 74 ADWG-------------LNVKINEGNKEVHFYYGRQYRGTTICRSMEKP---QTIVGFKI 117 Query: 193 MAVFNDEASGTPDIINKSILGFFTEL-----NPNRFWIMTSNTRRLNGWFYDIFNIPLED 247 DE P ++ + R I + T + Y+ F + + Sbjct: 118 GNALVDELDILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTPEGFKFVYEQFVKAVRE 177 Query: 248 -------WKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299 + Q T E + + + ++ Y ++ + + GQF Sbjct: 178 KTELASLYGLVQASTFDNEKNLPADYIPSLLESY--PPELIKAYLRGQFTNLTSGTVYHQ 235 Query: 300 NYIEEAMSREAIDDLYAPLIMGCD 323 + + + E ++ P+ +G D Sbjct: 236 -FDRKLNNCEEVEQPGEPIYIGMD 258 >gi|300825021|ref|ZP_07105118.1| phage terminase, large subunit, PBSX family [Escherichia coli MS 119-7] gi|300522485|gb|EFK43554.1| phage terminase, large subunit, PBSX family [Escherichia coli MS 119-7] Length = 435 Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 84/264 (31%), Gaps = 33/264 (12%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 S P FK A AG G GKT + + I PG++ A + Q+++ + V + Sbjct: 17 SMPHKFK-AYIAGFGSGKTWVGCGGICKGIWEHPGINQGYFAPTYPQIRDIFYPTVEEVA 75 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 + + E ++ + Y T S E+P Sbjct: 76 ADWG-------------LNVKINEGNKEVHFYYGRQYRGTTICRSMEKP---QTIVGFKI 119 Query: 193 MAVFNDEASGTPDIINKSILGFFTEL-----NPNRFWIMTSNTRRLNGWFYDIFNIPLED 247 DE P ++ + R I + T + Y+ F + + Sbjct: 120 GNALVDELDILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTPEGFKFVYEQFVKAVRE 179 Query: 248 -------WKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299 + Q T E + + + ++ Y ++ + +LG+F Sbjct: 180 KTELASLYGLVQASTFDNEKNLPADYIPSLLESY--PPELIKAYLLGRFTNLTSGTVYHQ 237 Query: 300 NYIEEAMSREAIDDLYAPLIMGCD 323 + + + E ++ P+ +G D Sbjct: 238 -FDRKLNNCEEVEQPGEPIYIGMD 260 >gi|193062487|ref|ZP_03043581.1| terminase [Escherichia coli E22] gi|192931609|gb|EDV84209.1| terminase [Escherichia coli E22] Length = 433 Score = 67.3 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 84/264 (31%), Gaps = 33/264 (12%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 S P FK A AG G GKT + + I PG++ A + Q+++ + V + Sbjct: 15 SMPHKFK-AYIAGFGSGKTWVGCGGICKGIWEHPGINQGYFAPTYPQIRDIFYPTVEEVA 73 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 + + E ++ + Y T S E+P Sbjct: 74 ADWG-------------LNVKINEGNKEVHFYYGRQYRGTTICRSMEKP---QTIVGFKI 117 Query: 193 MAVFNDEASGTPDIINKSILGFFTEL-----NPNRFWIMTSNTRRLNGWFYDIFNIPLED 247 DE P ++ + R I + T + Y+ F + + Sbjct: 118 GNALVDELDILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTPEGFKFVYEQFVKAVRE 177 Query: 248 -------WKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299 + Q T E + + + ++ Y ++ + +LG+F Sbjct: 178 KTELASLYGLVQASTFDNEKNLPADYIPSLLESY--PPELIKAYLLGRFTNLTSGTVYHQ 235 Query: 300 NYIEEAMSREAIDDLYAPLIMGCD 323 + + + E ++ P+ +G D Sbjct: 236 -FDRKLNNCEEVEQPGEPIYIGMD 258 >gi|148256282|ref|YP_001240867.1| hypothetical protein BBta_4946 [Bradyrhizobium sp. BTAi1] gi|146408455|gb|ABQ36961.1| hypothetical protein BBta_4946 [Bradyrhizobium sp. BTAi1] Length = 482 Score = 66.9 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 48/287 (16%), Positives = 93/287 (32%), Gaps = 37/287 (12%) Query: 68 SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST-------RPGMS--IICIANSET 118 + + + GR GK + + + + RPG ++C+A Sbjct: 70 GDRAPPPDRVREMWCVVGRRGGKDAVASLIAASAAALFDQENRLRPGERALVMCLACDRA 129 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 Q + L + + + LP +G + + + Sbjct: 130 QARIIL-NYIRSYFTDLPL------------LAGMVTRETAEGFELSNGVDVAVATNSFR 176 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDII-NKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 + +A + DE + PD ++I L+ + I S+ R +G Sbjct: 177 AVRGRPILLAVLDEVAFWRDENTAKPDEELYRAITPAMATLSNSMI-IGISSPYRKSGLL 235 Query: 238 YDIFNI---PLEDWKRYQIDTRT-VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293 Y F D Q TRT I + ++ D A E +G+F + ++ Sbjct: 236 YKKFKSHFGKDGDVLVIQAPTRTLNPTIPQEIIDRALA---EDPAAASAEWMGEF-RDDI 291 Query: 294 NNFIPHNYIEEAMSREAIDDLYAPLIMG---CDIAGEGGDK--TVVV 335 ++P IE A+ + + P+ + CD +G GD + Sbjct: 292 GGWLPLEVIESAVDQGVMVRPPQPIHIYRSFCDPSGARGDSFTCAIA 338 >gi|115374293|ref|ZP_01461578.1| ATP/GTP-binding site motif A [Stigmatella aurantiaca DW4/3-1] gi|310818178|ref|YP_003950536.1| large terminase [Stigmatella aurantiaca DW4/3-1] gi|115368714|gb|EAU67664.1| ATP/GTP-binding site motif A [Stigmatella aurantiaca DW4/3-1] gi|309391250|gb|ADO68709.1| large terminase [Stigmatella aurantiaca DW4/3-1] Length = 472 Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 30/285 (10%), Positives = 64/285 (22%), Gaps = 31/285 (10%) Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 C + AGRG GKT A ++ I + +++T Sbjct: 58 DFWARREQVPPDKFSTCFVMAGRGFGKTWCGARWVIKKAWQAK-SVGALIGPTAADVRDT 116 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 + S L++ P + + D Sbjct: 117 MIRGASGILALSPPGFTPRYEPSKRRVT------------------WPNGVYAICYSADK 158 Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFT----ELNPNRFWIMTSNTRRLNGWFYD 239 + + DE + + ++T R L Sbjct: 159 PDRLRGPNAGWGWGDEPASWKHDMAAVDQLPLVLRIGTREHPPQLLLTGTPRPLKKIEDL 218 Query: 240 IFNIPL----EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN 295 +F + + + + R ++ + E+LG+ Sbjct: 219 LFTNAETQQLKPGVVLRTGSSLSNAANLAPSAIANMRALANTRWGQQEVLGRLLFDVPGA 278 Query: 296 FI-PHNYIEEAMSREAIDDLYAPLIMGCDI---AGEGGDKTVVVF 336 + I+ D + G D+T ++ Sbjct: 279 IFGSARWGRVHAEPHEYAQQLDRRIVSVDPSPTSETGSDETGIIV 323 >gi|225626397|ref|YP_002727892.1| terminase large subunit [Enterococcus phage EFAP-1] gi|225346568|gb|ACN86334.1| terminase large subunit [Enterococcus phage EFAP-1] Length = 574 Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 43/324 (13%), Positives = 94/324 (29%), Gaps = 60/324 (18%) Query: 68 SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW--LISTRPG--MSIICIANSETQLKNT 123 N K IS R GK+ L A + L+ L+ P I+ AN++ Q Sbjct: 89 RKKKNKMRRFRKVYISLARKNGKSILVAGISLYEFLLGQYPNASRQIVAAANTKDQA-GI 147 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 ++ + L L + ++ E ++ Sbjct: 148 VFNMLKSQLKALRAVSDGTRKVTKVNKKDIEHLEDESTVKP---------------LSSD 192 Query: 184 FVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD--- 239 + DE + + + ++ I+++ T+ LNG + Sbjct: 193 VDSLDGLDVLCGVLDEYGEAKSTAMIEVLESSQSQQLQGLILIISTTTKNLNGPMHSIEY 252 Query: 240 -------IFNIPLEDWKRYQIDTRTVEGIDSG--FHEG--IISRYGLDSDVARIEI---- 284 + + + + ++ +D + + + L + ++ Sbjct: 253 PFITKLLNEEVEADAYLALCWEMDSLSEVDDEANWIKSNPLFENAQLHETMYEHKVNSLA 312 Query: 285 ---------------LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329 + + Q ++FI E + D P+ +G D+A G Sbjct: 313 EYKAKGDMSGWLTKEMNFWVQSSQDSFIDKESWEAVKQTKPYDIKGRPVYIGLDLARTG- 371 Query: 330 DKTVVVFRRGNIIEHIFDWSAKLI 353 D T V + + I + L+ Sbjct: 372 DMTAV-----SWVIPIAEERKLLL 390 >gi|163735142|ref|ZP_02142578.1| hypothetical protein RLO149_23000 [Roseobacter litoralis Och 149] gi|161391600|gb|EDQ15933.1| hypothetical protein RLO149_23000 [Roseobacter litoralis Och 149] Length = 267 Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 33/275 (12%), Positives = 75/275 (27%), Gaps = 42/275 (15%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 P WQ M + + A R GK+T M ++ P Sbjct: 29 PPDPWQRSLMNSTSDV--------------IMVLASRRSGKSTTVGVMAGQELAK-PDHQ 73 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 +I ++ + Q + W M LH + + Sbjct: 74 VIILSPTLAQSQLLFAKIAFTWEKMALPIETRRRTMTELHLKNGSSVVCVP--------- 124 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 + + + DEA+ PD + + + N + + Sbjct: 125 --------AGQDGEGARGYGVKNGILAFDEAAFIPDKVFGA---TLSIAEDNAKTVFITT 173 Query: 230 TRRLNGWFYDIF--NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287 +G Y+++ + + +R + + + + + ++ +E Q Sbjct: 174 PGGKSGKAYEMWTNHDLYPEVERIRACSLDLPRMAKLVARQRKTLSKME---FDVEHGLQ 230 Query: 288 FPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGC 322 + + F + I A + + + L G Sbjct: 231 WMGRG-TPFFDPDTIRAAY-TDTPELKFGDLYAGI 263 >gi|29366741|ref|NP_813786.1| DNA packaging protein B [Pseudomonas phage gh-1] gi|29243600|gb|AAO73179.1|AF493143_40 DNA packaging protein B [Pseudomonas phage gh-1] Length = 582 Score = 66.9 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 47/379 (12%), Positives = 93/379 (24%), Gaps = 86/379 (22%) Query: 24 CVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS 83 SF F+ F W P +P + Q++ + + + + Sbjct: 14 IKRSFVAFL--FVLWRALNLP-----KPTKCQIDMAKKLSAGDER----------RFILQ 56 Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 A RGIGK+ + ++W + P + + ++ S+ + + + + +LP H + Sbjct: 57 AFRGIGKSFITCAFVVWKLWNNPDLKFMIVSASKERADANSVF-IKRIIDLLPFLHELKP 115 Query: 144 QS-LSLHPSGWYAELLEQSMGIDSKHYTITCRTY----------SEERPDTFVGPHNTHG 192 + + K IT + E P+ Sbjct: 116 GPGQRDSSLAFDVGPAKPDHSPSVKSVGITGQLTGSRADILIADDVEVPNNSATQTARDH 175 Query: 193 MAVFNDEASGT------------PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-- 238 + E P W + W Sbjct: 176 LGELVKEFDAILKPGGTIIYLGTPQTEMTLYRELEGRGYVTTIWPARY-PKDQADWDSYG 234 Query: 239 -----DIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI------LGQ 287 + D + T V D YG + + + + Sbjct: 235 PRLAPMLAAELQADGSLFWAPTDEV-RFDDKDLRERELSYGKGGFALQFMLNPNLSDMEK 293 Query: 288 FPQQEVNNFI--------PHNYI---EEAMSREAID-------------------DLYAP 317 +P + + + P I A + + YA Sbjct: 294 YPLKLRDFIVGTFAQDKGPTTLIWMPNAANECKGVPVVGLKGDRFHRYESVGQATASYAQ 353 Query: 318 LIMGCDIAGEGGDKTVVVF 336 I+ D +G G D+T Sbjct: 354 KILVIDPSGRGKDETGYAV 372 >gi|300173892|ref|YP_003773058.1| phage terminase large subunit [Leuconostoc gasicomitatum LMG 18811] gi|299888271|emb|CBL92239.1| phage terminase, large subunit, pbsx family [Leuconostoc gasicomitatum LMG 18811] Length = 427 Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 38/295 (12%), Positives = 91/295 (30%), Gaps = 28/295 (9%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 N A RG GK+ A ++ I T+P ++ + + + + + + K Sbjct: 20 FNSKARYIAYKGSRGSGKSEGVATKVILDIVTKPYVNWLVLRRYANTNRQSTFTLLQKVA 79 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 + + F+ + I R + T + + Sbjct: 80 NRMGVGSLFQFN------------GSLPEITFKPTGQKILFRGADKPLSITSISVETGNL 127 Query: 193 MAVFNDEASGTP-----DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247 ++ +EA + +++S+ G + + ++T N W F Sbjct: 128 CRLWVEEAYQMELEESFETVDESMRGVIDDPDGFYQTVLTFNPWNERHWLKKRFFDEDTR 187 Query: 248 WKR---YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE 304 + +D + ++ + AR+ + G++ + +E+ Sbjct: 188 VNNSLAITTTYKDNPFLDVDYVNRLLEMKKRNPRRARVAVDGEW-GVAEGLIYENTIVEK 246 Query: 305 AMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNI----IEHIFDWSAKLIQE 355 RE + + ++ G D G G D T + N I + + + + Sbjct: 247 FDIREVL--KGSHIVRGMD-WGYGPDPTTFIEYAINTKTKDIYILKEMYKQHMLT 298 >gi|154488071|ref|ZP_02029188.1| hypothetical protein BIFADO_01641 [Bifidobacterium adolescentis L2-32] gi|154083544|gb|EDN82589.1| hypothetical protein BIFADO_01641 [Bifidobacterium adolescentis L2-32] Length = 477 Score = 66.5 bits (160), Expect = 7e-09, Method: Composition-based stats. Identities = 40/289 (13%), Positives = 72/289 (24%), Gaps = 46/289 (15%) Query: 49 SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPG 107 + WQ + V + + A+ + R GKT W+ + + PG Sbjct: 34 DRFDPWQRQINRIVLA-----KSADGFWSARNAVLSIPRQTGKTYDIGWVAIHRAARTPG 88 Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 M I+ A + +K+T + S+ EM L G ++ + + Sbjct: 89 MRIVWTAQHFSVIKDT-------FESLCAIVLRPEMSGLVDPDHGISLAAGKEEIRFRNG 141 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227 + DEA D S+L + I Sbjct: 142 SRIFFRARERGALRGV------KKIALLVIDEAQHLSDSAMASMLPTQNRAYNPQT-IYM 194 Query: 228 SNTRRLNG------------------------WFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + D PL+ + + + Sbjct: 195 GTPPGPRDNGEAFTRLRDKARAGRTHSTLYVEFAADRDADPLDREQWRKANPSYPAHTSD 254 Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + D R E LG + + ++ I EEA Sbjct: 255 ESIANLWENLTGDD--FRREALGIWDEHALSRAIDRRQWEEATIDARRP 301 >gi|324117425|gb|EGC11331.1| hypothetical protein ERBG_02498 [Escherichia coli E1167] Length = 442 Score = 66.5 bits (160), Expect = 7e-09, Method: Composition-based stats. Identities = 35/259 (13%), Positives = 71/259 (27%), Gaps = 29/259 (11%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL---KNTLWAEVSKWLSMLPH 137 A+ GR GKT + + + + + QL + ++ + + Sbjct: 28 AVCCGRRWGKTVMLVNIATSFATRK------FAVPTTGQLIAGRVGIFTAQYRQYQEIWD 81 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP-HNTHGMAVF 196 S L+ + + D AV Sbjct: 82 E-----------ISAVLQPLILSQSKNEKRIILRNGGRIDFWVTDNNKLAGRGRKYHAVL 130 Query: 197 NDEASG------TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250 DEA+ +I ++I + + T N + +FY I + + Sbjct: 131 IDEAAFTKSPEMLEEIWPRAIRPTLVDYRGCAWVFSTPNGIDESNFFYAICHDESLGFVM 190 Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310 + T + I E + D V + E L +F + + + + Sbjct: 191 HHAPTSSNPYIPKEELEETEKKS--DPRVWQQEYLAEFVDWSKDALLDVDKLLVDGQPIE 248 Query: 311 IDDLYAPLIMGCDIAGEGG 329 + + D A +GG Sbjct: 249 MPPYCDMIFAVMDTALKGG 267 >gi|282533135|gb|ADA82244.1| putative terminase [Escherichia phage K1G] Length = 416 Score = 66.5 bits (160), Expect = 7e-09, Method: Composition-based stats. Identities = 32/284 (11%), Positives = 67/284 (23%), Gaps = 28/284 (9%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 A G G GKT + +L + PG + + +++ + + ++L Sbjct: 21 AYVGGFGSGKTFVGCLDLLTFMLKHPGTRLGYFGPTYPAIRDIFYPTFEEAANLLGLDVL 80 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 E++ D A DE Sbjct: 81 V---------KSGDKEVVVTRGKTVLGTVICRSM-------DNPGSIVGFKIAAAVVDEL 124 Query: 201 SGTPDIINKSILGFFTELNPNRF-----WIMTSNTRRLNGWFYDIF-NIPLEDWKRYQID 254 + I + T + Y F P + Q Sbjct: 125 DVLSREKAELAWNKIVARMRLVIPGVINHISVTTTPEGFKFVYAKFKENPTPSYSMVQAS 184 Query: 255 TRTVEGI-DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 T + + Y + + + G+F + + Y + + Sbjct: 185 THENARFLPPDYISSLTETY--PAQLINAYLNGEFVNLTSGSVY-YAYDRRKHRSKEVIQ 241 Query: 314 LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK-LIQET 356 L +G D + V +R + + + +T Sbjct: 242 PGDTLYIGQDFNVTKN-ASAVYVQRKDGWHAVAELKGLFDTPDT 284 >gi|118445162|ref|YP_879274.1| PBSX family phage terminase large subunit [Clostridium novyi NT] gi|118135618|gb|ABK62662.1| phage terminase, large subunit, PBSX family [Clostridium novyi NT] Length = 434 Score = 66.5 bits (160), Expect = 7e-09, Method: Composition-based stats. Identities = 26/244 (10%), Positives = 71/244 (29%), Gaps = 24/244 (9%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 G G GK+ ML+ + + + ++ +++ E + L + + Sbjct: 34 GGAGSGKSKFVVQKMLYKLL-NEKRKCLVTRKVGSTIRESIFQEFKTLIGDLGIYNQCNI 92 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + ++ + + I E+ + + + +EA+ Sbjct: 93 NKTDM------------TIELPNGSTFIFKGLDDSEKIKSISDISD-----IVIEEATEL 135 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD-IFNIPLEDWKRYQIDTRTVEGID 262 + + N+ + N W Y F + + + + Sbjct: 136 TLLDFTQLNLRMRTKQKNQQIHLMFNPVNKVNWVYKTFFEQKYDGALIVKTTYKNNPYLP 195 Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEV---NNFIPHNYIEEAMSREAIDDLYAPLI 319 + + I + + +I G+F + N+ P ++ + + + Sbjct: 196 KDYVKEIKQLKETNYTLYKIYAEGEFSSLDKRIFTNWQPLDF--DILDIKYEKVKNKLKE 253 Query: 320 MGCD 323 MG D Sbjct: 254 MGID 257 >gi|261368738|ref|ZP_05981621.1| phage terminase, large subunit, PBSX family [Subdoligranulum variabile DSM 15176] gi|282569160|gb|EFB74695.1| phage terminase, large subunit, PBSX family [Subdoligranulum variabile DSM 15176] Length = 417 Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 26/250 (10%), Positives = 61/250 (24%), Gaps = 20/250 (8%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 GR K++ + ++ + P + L+++++A++ + L F Sbjct: 37 KGGRASLKSSYVSVEVILQLIHHPDCHALVCRQVADTLRDSVYAQILWAIDKLGLTAKFR 96 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 L I R + + + + ++ +EA Sbjct: 97 CTQSPL------------QCTYLPTGQRILFRGLDDTQKIKSIKLPFGYIGVLWFEEADQ 144 Query: 203 TP--DIINKSILGFFTELNPNRFWIMTSNTRRLN-GWFYDIFNIPLEDWKRYQIDTRTVE 259 + +++ ++ N W + + + Sbjct: 145 IKGGEDAVRNVQQSALRGGEFGLTFISFNPPSAARNWANKYALVQRPGKRVHHSSYLEAP 204 Query: 260 --GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE-EAMSREAIDDLYA 316 + F R E LG+ F E A + D Sbjct: 205 PEWLGPKFLAQAEYIKETKPTKYRHEYLGEAVGNGTQVFDNIRLEELSAKRIRSFGDALN 264 Query: 317 PLIMGC--DI 324 + G D Sbjct: 265 GVDWGWYPDP 274 >gi|307309864|ref|ZP_07589514.1| conserved hypothetical protein [Escherichia coli W] gi|306909582|gb|EFN40076.1| conserved hypothetical protein [Escherichia coli W] gi|315060632|gb|ADT74959.1| phage terminase large subunit [Escherichia coli W] gi|323378804|gb|ADX51072.1| hypothetical protein EKO11_2468 [Escherichia coli KO11] Length = 442 Score = 66.1 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 35/259 (13%), Positives = 71/259 (27%), Gaps = 29/259 (11%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL---KNTLWAEVSKWLSMLPH 137 A+ GR GKT + + + + + QL + ++ + + Sbjct: 28 AVCCGRRWGKTVMLVNIATSFATRK------FAVPTTGQLIAGRVGIFTAQYRQYQEIWD 81 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP-HNTHGMAVF 196 S L+ + + D AV Sbjct: 82 E-----------ISAVLQPLILSQSKNEKRIILRNGGRIDFWVTDNNKLAGRGRKYHAVL 130 Query: 197 NDEASG------TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250 DEA+ +I ++I + + T N + +FY I + + Sbjct: 131 IDEAAFTKSPEMLEEIWPRAIRPTLVDYRGCAWVFSTPNGIDESNFFYAICHDESLGFVM 190 Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310 + T + I E + D V + E L +F + + + + Sbjct: 191 HHAPTSSNPYIPKEELEETEKKS--DPRVWQQEYLAEFVDWSKDALLDVDKLLVDGQPVE 248 Query: 311 IDDLYAPLIMGCDIAGEGG 329 + + D A +GG Sbjct: 249 MPPHCDMIFAVMDTALKGG 267 >gi|227498429|ref|ZP_03928575.1| phage terminase large subunit [Acidaminococcus sp. D21] gi|226903887|gb|EEH89805.1| phage terminase large subunit [Acidaminococcus sp. D21] Length = 418 Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 33/262 (12%), Positives = 74/262 (28%), Gaps = 20/262 (7%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 ++ GRG K++ + L+ P + + +KN+++ ++ L L Sbjct: 29 WLAGGRGSTKSSFVGMEIPLLMLQHPDCHAVVLRKVGGTIKNSVYPQIQWGLEQLQVLDR 88 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 F+ + + +G D + + + V+ +E Sbjct: 89 FKYKMTPPEMTLERTGQKILFLGCDDPMKVKSIKLPFG------------YVGIVWLEEL 136 Query: 201 SGTP-DIINKSILGFFTELNPNRFWIMTSNTRR-LNGWFYDIFNIPLEDWKRYQIDTRTV 258 +++ P + T N + + W + + D ++ V Sbjct: 137 DQFSGMEEIRNLCQSLLRGGPQYWVFCTYNPPKSRSSWVNEEILVDDPDRMVHRSTYLQV 196 Query: 259 E--GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA 316 + F + + R E LG+ +E+ E + Sbjct: 197 PQKWLGEQFLQEAEKLKERNEMAYRHEYLGE-VTGTGGAVF--ENVEDLPLTEEALGQFD 253 Query: 317 PLIMGCDIAGEGGDKTVVVFRR 338 + G D G D V Sbjct: 254 HRLFGLDF-GFAVDPLAFVAMH 274 >gi|320458831|dbj|BAJ69452.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 478 Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 40/327 (12%), Positives = 82/327 (25%), Gaps = 54/327 (16%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 WQ + + IS R +GKT + L + +P + ++ Sbjct: 39 DLWQQGLLYLM--LGKREDGLYACGEGGTVISICRQVGKTFTIGSAVFLLCAMQPNLKVL 96 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A+ T + + L H + +Q + + + Sbjct: 97 WTAHRTRTSDETFQSMCGFAKNKLMAGHVEHI----------RRANGQQEIAFRNGSRVM 146 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 DEA ++ T ++PN + Sbjct: 147 FGAREQGFGRG------FDAVDVEIFDEAQILTVKALNDMIPA-TNVSPNPLIVFMGTPP 199 Query: 232 RLNGW------------------FYDIFN-----IPLEDWKRYQIDTRTVEGIDSGFHEG 268 + Y F+ P + + + + + Sbjct: 200 QPGDPSETFADKRRDGLKHTDGMLYVEFSADPDCDPDDREQWAKANPSFPKRTSETAILR 259 Query: 269 IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEG 328 + G D + R E LG + + + I E DL L G D Sbjct: 260 MRKLLGDDDN-FRREGLGIWDGENSISAIDPQQWEAGNI--DQPDLDGRLAFGLD---MP 313 Query: 329 GDKTVV----VFRR--GNIIEHIFDWS 349 D++ + R G + ++ ++ Sbjct: 314 PDRSALAIGMAVRHDDGTALINLQEYR 340 >gi|282534188|gb|ADA82296.1| putative terminase [Escherichia phage K1H] gi|282535239|gb|ADA82445.1| putative terminase [Escherichia phage K1ind3] Length = 416 Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 32/284 (11%), Positives = 66/284 (23%), Gaps = 28/284 (9%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 A G G GKT + +L + PG + + +++ + + ++L Sbjct: 21 AYVGGFGSGKTFVGCLDLLTFMLKHPGTRLGYFGPTYPAIRDIFYPTFEEAANLLGLDVL 80 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 E++ D A DE Sbjct: 81 V---------KSGDKEVVVTRGKTVLGTVICRSM-------DNPGSIVGFKIAAAVVDEL 124 Query: 201 SGTPDIINKSILGFFTELNPNRF-----WIMTSNTRRLNGWFYDIF-NIPLEDWKRYQID 254 + I + T + Y F P + Q Sbjct: 125 DVLSREKAELAWNKIVARMRLVIPGVTNHISVTTTPEGFKFVYAKFKENPTPSYSMVQAS 184 Query: 255 TRTVEGI-DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 T + + Y + + + G+F + + Y + Sbjct: 185 THENARFLPPDYISSLTETY--PAQLINAYLNGEFVNLTSGSVY-YAYDRRKHRSKETIQ 241 Query: 314 LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK-LIQET 356 L +G D + V +R + + + +T Sbjct: 242 PGDTLYIGQDFNVTKN-ASAVYVQRKDGWHAVAELKGLFDTPDT 284 >gi|288818194|ref|YP_003432542.1| phage uncharacterized protein [Hydrogenobacter thermophilus TK-6] gi|288787594|dbj|BAI69341.1| phage uncharacterized protein [Hydrogenobacter thermophilus TK-6] gi|308751795|gb|ADO45278.1| phage uncharacterized protein [Hydrogenobacter thermophilus TK-6] Length = 470 Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 82/281 (29%), Gaps = 35/281 (12%) Query: 74 NPTIFKCAISAGRGIGKTTLN-AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 NP + + ++A R GKT+L +LW I I+CI SE + K Sbjct: 61 NPQMKRVVVAAPREHGKTSLIYLGYVLWSILYGKHKFIVCIGASEQRAK----------- 109 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 L + ++ ID+ H T+ R ++ Sbjct: 110 EQLEDIRLELENNTAILQDFGEVIKRATVERIDTVHTTVISRGAGQKLRGLVK--RGERP 167 Query: 193 MAVFNDEAS--------GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244 V D+ D + K L+ N + + ++ Sbjct: 168 DLVILDDIESEEHANSKSLRDKLKKWFYRVVMGLSQNAKIFVIGTILHYDSLLNELITRG 227 Query: 245 LE-DWKRYQIDTRT---VEGIDSGFHEGIISRYGLD--SDVARIEILGQFPQQEVNNFIP 298 E W + T + + + + S E + + P + + Sbjct: 228 QELGWFAKKYKAITDEGKPLHPHLWTLEALEKKKQEIGSYAFASEYMNE-PLSDEDRIFR 286 Query: 299 HNYIEEAMSREAIDDLYAPLIMGCDIAGEG---GDKTVVVF 336 +I+ E +D ++ G D + G GD T + Sbjct: 287 QEWIK--YYEEKLDLSKLDIVAGVDPS-TGKEKGDYTAIAV 324 >gi|291334408|gb|ADD94064.1| hypothetical protein [uncultured phage MedDCM-OCT-S01-C1] Length = 173 Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 22/170 (12%), Positives = 53/170 (31%), Gaps = 24/170 (14%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 + ++ A+ GRG GK+ A + + G I+C + ++ ++ A ++ + + Sbjct: 17 SRYRIAV-GGRGSGKSMTVAMLCILEAIQ--GKKILCCREYQNSIQESVHALIASLIDSM 73 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 + + S I ++ + TH Sbjct: 74 GV---------------AGFTVTRDKISHTSGGEFIFKGLAR--NAESIKSLYGTHV--A 114 Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL 245 + +EA + + E ++ +T+N R + F Sbjct: 115 WVEEAQTVSEESLSLLTPTIREAGS--YFFITANPRSEADPLTERFLKGR 162 >gi|213692678|ref|YP_002323264.1| phage Terminase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524139|gb|ACJ52886.1| phage Terminase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 467 Score = 66.1 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 40/327 (12%), Positives = 82/327 (25%), Gaps = 54/327 (16%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 WQ + + IS R +GKT + L + +P + ++ Sbjct: 28 DLWQQGLLYLM--LGKREDGLYACGEGGTVISICRQVGKTFTIGSAVFLLCAMQPNLKVL 85 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A+ T + + L H + +Q + + + Sbjct: 86 WTAHRTRTSDETFQSMCGFAKNKLMAGHVEHI----------RRANGQQEIAFRNGSRVM 135 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 DEA ++ T ++PN + Sbjct: 136 FGAREQGFGRG------FDAVDVEIFDEAQILTVKALNDMIPA-TNVSPNPLIVFMGTPP 188 Query: 232 RLNGW------------------FYDIFN-----IPLEDWKRYQIDTRTVEGIDSGFHEG 268 + Y F+ P + + + + + Sbjct: 189 QPGDPSETFADKRRDGLKHTDGMLYVEFSADPDCDPDDREQWAKANPSFPKRTSETAILR 248 Query: 269 IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEG 328 + G D + R E LG + + + I E DL L G D Sbjct: 249 MRKLLGDDDN-FRREGLGIWDGENSISAIDPQQWEAGNI--DQPDLDGRLAFGLD---MP 302 Query: 329 GDKTVV----VFRR--GNIIEHIFDWS 349 D++ + R G + ++ ++ Sbjct: 303 PDRSALAIGMAVRHDDGTALINLQEYR 329 >gi|323976986|gb|EGB72073.1| hypothetical protein ERFG_01987 [Escherichia coli TW10509] Length = 442 Score = 66.1 bits (159), Expect = 9e-09, Method: Composition-based stats. Identities = 31/230 (13%), Positives = 63/230 (27%), Gaps = 29/230 (12%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL---KNTLWAEVSKWLSMLPH 137 A+ GR GKT + + + + + QL + ++ + + Sbjct: 28 AVCCGRRWGKTVMLVNIATSFATRK------FAVPTTGQLIAGRVGIFTAQYRQYQEIWD 81 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP-HNTHGMAVF 196 S L+ + + D AV Sbjct: 82 E-----------ISAVLQPLILSQSKNEKRIILRNGGRIDFWVTDNNKLAGRGRKYHAVL 130 Query: 197 NDEASG------TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250 DEA+ +I ++I + + T N + +FY I + + Sbjct: 131 IDEAAFTKSPEMLEEIWPRAIRPTLVDYRGCAWVFSTPNGIDESNFFYAICHDESLGFVM 190 Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 + T + I E + D V + E L +F + + + Sbjct: 191 HHAPTSSNPYIPKEELEETEKKS--DPRVWQQEYLAEFVDWSKDALLDVD 238 >gi|219873383|ref|YP_002477648.1| phage terminase, large subunit, pbsx family [Borrelia garinii Far04] gi|219694616|gb|ACL35135.1| phage terminase, large subunit, pbsx family [Borrelia garinii Far04] Length = 267 Score = 66.1 bits (159), Expect = 9e-09, Method: Composition-based stats. Identities = 37/247 (14%), Positives = 69/247 (27%), Gaps = 34/247 (13%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMS 109 Q E + ++ H K S G GKT L +++++ + + Sbjct: 49 QKEVLFDIESH----------DYSKVIFSGGIASGKTFLASYLLIKKLIENKSFYEKDTN 98 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I NS L ++ K L + + +S EL Sbjct: 99 NFIIGNSIGLLMTNTIKQIEKICGFLGI-DYQKKKSGESFCKIAGLELN----------- 146 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 Y + D+F + ++ +EA+ + + I +N Sbjct: 147 -----IYGGKNRDSFSKIRGGNSAIIYVNEATVIHKETLLEAIKRLRKG--KAIIIFDTN 199 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 +F F + +K Y T + F E Y + G++ Sbjct: 200 PESPTHFFKTDFIENKDVFKTYNFTTYDNPLNSADFIETQKKLYKHLPAYKARVLYGEWI 259 Query: 290 QQEVNNF 296 E F Sbjct: 260 LNESTLF 266 >gi|291517493|emb|CBK71109.1| Phage terminase large subunit [Bifidobacterium longum subsp. longum F8] Length = 477 Score = 66.1 bits (159), Expect = 9e-09, Method: Composition-based stats. Identities = 39/288 (13%), Positives = 70/288 (24%), Gaps = 44/288 (15%) Query: 49 SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108 + WQ + + + +S R GKT W+ + + PGM Sbjct: 34 DRFDVWQRQINRIILAKSADG----FWSARNTVLSIPRQTGKTYDIGWVAIHRAARTPGM 89 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 I+ A + +K+T + S+ EM L G ++ + + Sbjct: 90 RIVWTAQHFSVIKDT-------FESLCAIVLRPEMSGLVDPDHGISLAAGKEEIRFRNGS 142 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 + DEA D S+L + I Sbjct: 143 RIFFRARERGALRGV------KKIALLVIDEAQHLSDSAMASMLPTQNRAYNPQT-IYMG 195 Query: 229 NTRRLNG------------------------WFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264 + D PL+ + + + Sbjct: 196 TPPGPRDNGEAFTRLRDKTRAGRTHSTLYVEFAADRDADPLDREQWRKANPSYPAHTSDE 255 Query: 265 FHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + D R E LG + + ++ I EEA Sbjct: 256 SIANLWENLTGDD--FRREALGIWDEHALSRAIDRRQWEEATIDARRP 301 >gi|282547341|gb|ADA82397.1| putative terminase [Escherichia phage K1ind2] Length = 416 Score = 65.7 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 32/284 (11%), Positives = 66/284 (23%), Gaps = 28/284 (9%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 A G G GKT + +L + PG + + +++ + + ++L Sbjct: 21 AYVGGFGSGKTFVGCLDLLTFMLKHPGTRLGYFGPTYPAIRDIFYPTFEEAANLLGLDVL 80 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 E++ D A DE Sbjct: 81 V---------KSGDKEVVVTRGKTVIGTVICRSM-------DNPGSIVGFKIAAAVVDEL 124 Query: 201 SGTPDIINKSILGFFTELNPNRF-----WIMTSNTRRLNGWFYDIF-NIPLEDWKRYQID 254 + I + T + Y F P + Q Sbjct: 125 DVLSREKAELAWNKIVARMRLVIPGVINHISVTTTPEGFKFVYAKFKENPTPSYSMVQAS 184 Query: 255 TRTVEGI-DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 T + + Y + + + G+F + + Y + Sbjct: 185 THENARFLPPDYISSLTETY--PAQLINAYLNGEFVNLTSGSVY-YAYDRRKHRSKETIQ 241 Query: 314 LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK-LIQET 356 L +G D + V +R + + + +T Sbjct: 242 PGDTLYIGQDFNVTKN-ASAVYVQRKDGWHAVAELKGLFDTPDT 284 >gi|293374297|ref|ZP_06620625.1| phage terminase, large subunit, PBSX family [Turicibacter sanguinis PC909] gi|292647130|gb|EFF65112.1| phage terminase, large subunit, PBSX family [Turicibacter sanguinis PC909] Length = 418 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 34/260 (13%), Positives = 66/260 (25%), Gaps = 27/260 (10%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 G G GK+ ++ + T + N++W + L L Sbjct: 31 MGGAGSGKSHFVIQKLIIKACQSK-RKVCMCRRYGTTINNSIWDLTKQMLRQLKLLDQCS 89 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 + E+S+ + + I EE F +E Sbjct: 90 VNKS------------ERSITLPNGSMIIMLGLDDEE-----KLLSINGVTDFFIEEIFE 132 Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY--QIDTRTVEG 260 P I I P N + W + + + + + + Sbjct: 133 VPQEIVDQIDLRLRAKAPYLQIYGCFNPISPHHWLHGFCEGDKQPADLFYDRSNYKDNPF 192 Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI-PHNYIEEAMSREAI---DDLYA 316 + + + + S + + RI G + N+I + D Sbjct: 193 LPQSYVDSLESLKTRNPNKYRIFAEGNWGTDLDGLVFKHINFINS-HDIDVNAMLKDKSW 251 Query: 317 PLIMGCDIAGEGGDKTVVVF 336 + G DI D T + Sbjct: 252 QVRCGMDIGEL--DPTAIAV 269 >gi|327198111|ref|YP_004306641.1| terminase large subunit [Enterococcus phage EFRM31] gi|297179206|gb|ADI23907.1| terminase large subunit [Enterococcus phage EFRM31] Length = 574 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 41/324 (12%), Positives = 93/324 (28%), Gaps = 60/324 (18%) Query: 68 SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW-LISTRPGM---SIICIANSETQLKNT 123 N K IS R GK+ L A + L+ + + I+ AN++ Q Sbjct: 89 RKKKNGMRRFRKVYISLARKNGKSILVAGISLYEFLLGQYPQASRQIVAAANTKDQA-GI 147 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 ++ + L L + ++ E ++ Sbjct: 148 VFNMLKSQLKALRAVSDGTRKVTKVNKKDIEHLEDESTVKP---------------LSSD 192 Query: 184 FVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD--- 239 + DE + + + ++ I+++ T+ LNG + Sbjct: 193 ADSLDGLDVLCGVLDEYGEAKSTAMIEVLESSQSQQLQGLILIISTTTKNLNGPMHSIEY 252 Query: 240 -------IFNIPLEDWKRYQIDTRTVEGIDSG--FHEG--IISRYGLDSDVARIEI---- 284 + + + + ++ +D + + + L + ++ Sbjct: 253 PFITKLLNEEVEADAYLALCWEMDSLSEVDDEANWIKSNPLFENAQLHETMYEHKVNSLA 312 Query: 285 ---------------LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329 + + Q ++FI E + D P+ +G D+A G Sbjct: 313 EYKAKGDMSGWLTKEMNFWVQSSQDSFIDKESWEAVKQTQPYDIKGRPVYIGLDLARTG- 371 Query: 330 DKTVVVFRRGNIIEHIFDWSAKLI 353 D T V + + I + L+ Sbjct: 372 DMTAV-----SWVIPIAEERKLLL 390 >gi|293433738|ref|ZP_06662166.1| hypothetical protein ECCG_01867 [Escherichia coli B088] gi|291324557|gb|EFE63979.1| hypothetical protein ECCG_01867 [Escherichia coli B088] Length = 442 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 35/259 (13%), Positives = 71/259 (27%), Gaps = 29/259 (11%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL---KNTLWAEVSKWLSMLPH 137 A+ GR GKT + + + + + QL + ++ + + Sbjct: 28 AVCCGRRWGKTVMLVNIATSFATRK------FAVPTTGQLIAGRVGIFTAQYRQYQEIWD 81 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP-HNTHGMAVF 196 S L+ + + D AV Sbjct: 82 E-----------ISAVLQPLILSQSKNEKRIILRNGGRIDFWVTDNNKLAGRGRKYHAVL 130 Query: 197 NDEASG------TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250 DEA+ +I ++I + + T N + +FY I + + Sbjct: 131 IDEAAFTKSPEMLEEIWPRAIRPTLVDYRGCAWVFSTPNGIDESNFFYAICHDESLGFVM 190 Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310 + T + I E + D V + E L +F + + + + Sbjct: 191 HHAPTSSNPYIPKEELEETEKKS--DPRVWQQEYLAEFVDWSKDALLDVDKLLVDGQPVD 248 Query: 311 IDDLYAPLIMGCDIAGEGG 329 + + D A +GG Sbjct: 249 MPPHCDMIFAVMDTALKGG 267 >gi|167770494|ref|ZP_02442547.1| hypothetical protein ANACOL_01839 [Anaerotruncus colihominis DSM 17241] gi|167667089|gb|EDS11219.1| hypothetical protein ANACOL_01839 [Anaerotruncus colihominis DSM 17241] Length = 418 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 31/252 (12%), Positives = 71/252 (28%), Gaps = 19/252 (7%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 + GRG K++ + + + + IC L+++++A++ + L + Sbjct: 28 WLKGGRGSTKSSFISVEIPLGMVQDKQANAICYRKFGNTLESSVYAQLIWAIEQLGIAEY 87 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + + + + + R + + + + ++ +EA Sbjct: 88 WTINKSPMRLT------------YRPTGQVVLFRGLDDPNKSKSIKLPHGYFKYIWFEEA 135 Query: 201 SGTPD-IINKSILGFFTELNPNRFWIMTSNTRRLN-GWFYDIFNIPLEDWKRYQIDTRTV 258 D + + + + N + W + IP +D + V Sbjct: 136 DQYDDMEEIRKVTQSVIRSSGKPKVFYSYNPPKSVQSWINNEILIPRKDQIVHHSTYLDV 195 Query: 259 E--GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH---NYIEEAMSREAIDD 313 + F + D R E LG+ F EE + R Sbjct: 196 PKAWLGDQFLTEAEHLKNVKPDAYRHEYLGEVTGTGGEVFDNIRLEEITEEQIFRFDNIR 255 Query: 314 LYAPLIMGCDIA 325 D A Sbjct: 256 QGNDWGYAADPA 267 >gi|149174861|ref|ZP_01853485.1| hypothetical protein PM8797T_10814 [Planctomyces maris DSM 8797] gi|148846198|gb|EDL60537.1| hypothetical protein PM8797T_10814 [Planctomyces maris DSM 8797] Length = 568 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 52/393 (13%), Positives = 101/393 (25%), Gaps = 114/393 (29%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 WQ + +E++ TI + + G GK II Sbjct: 57 DDWQWDILESLFDL----------TIRRVFVKGNTGCGKGAAAGIACCTYFHIWNDAKII 106 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 +S + + EV KW + + ++ + + + Sbjct: 107 ITRDSVRTAQKIAFGEVDKWWRKMRFKPPGKLLTSGVFDN-----------------NQH 149 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 + + + + F G H+ H + + DEA+ + SN Sbjct: 150 SISLANPQHIEGFRGAHSPH-VFFWFDEATA---PNLEDKYKLANTQAKKFL--ALSNPS 203 Query: 232 RLNGWFYDIFN-----------IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL----- 275 L+G F D F + + + + E ++ G Sbjct: 204 TLSGTFRDSFPVVNPDKTQTIIDQYGNTRCITVSGWECTNVKEKCLEQPVAPIGGIKISD 263 Query: 276 -------------------------------------DSDVARIEILGQFPQQEVN-NFI 297 D + + LG+FP Q+ + I Sbjct: 264 NYYPHGSPIAADDFEKVQPRIPGQTCYDEFMALLNDADPLIRNVYALGKFPDQDPDKQVI 323 Query: 298 PHNYIEEAMSREAIDD-----LYAPLIM---------------GCDIA--GEGGDKTVVV 335 +++ E + + + G D+A G D +V+ Sbjct: 324 LPDWLIEPVKFWTRWNRLCLRAREQFHILALKLLEQILPVEGFGLDVAASRFG-DASVLA 382 Query: 336 F--RRGNIIEHIFDWSAKLIQETNQEGCPVGSS 366 R G I I + Q+T +S Sbjct: 383 VGGRYG--IRAIHECQFSDTQQTMSWVLETANS 413 >gi|108799880|ref|YP_640077.1| phage terminase [Mycobacterium sp. MCS] gi|119868990|ref|YP_938942.1| phage terminase [Mycobacterium sp. KMS] gi|108770299|gb|ABG09021.1| phage Terminase [Mycobacterium sp. MCS] gi|119695079|gb|ABL92152.1| phage Terminase [Mycobacterium sp. KMS] Length = 489 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 37/308 (12%), Positives = 67/308 (21%), Gaps = 55/308 (17%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 WQ E +V RG GK+TL A L+ T +++ Sbjct: 49 REWQQELAGSVLDADPRPRTAGWML--------PRGQGKSTLLAAYGLYDFFTGDEGAVV 100 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 C+ + + ++ + + + L+ + L Sbjct: 101 CVVAVDERQAGIIFGIARRMVELS--------DELASRCQVFKERLYIPERDAHFHCL-- 150 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT- 230 P DEA + + I Sbjct: 151 ---------PAEPKRLEGLDYTTALLDEAGVASRDSYEVLT-LAQGKRAQSTLIAIGTPG 200 Query: 231 ------------------RRLNGWFYDIFNIPL-EDWKRYQIDTRT--VEGIDSGFHEGI 269 + F+ ED +D H Sbjct: 201 PDPNNQVLADLRNYAADHPEDASLVWREFSAAGFEDHPVDCTHCWELANPALDDFLHRDA 260 Query: 270 IS---RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAG 326 + R L QF F+P + + I D +++ D + Sbjct: 261 LYALLPPKTREATFRRARLCQFASDTDGAFLPQGVWDGLSTGRPIPD-GTEVVVALDGS- 318 Query: 327 EGGDKTVV 334 D T + Sbjct: 319 FSDDTTAL 326 >gi|327198525|ref|YP_004327112.1| phage terminase large subunit [Pseudoalteromonas phage H105/1] gi|304367920|gb|ADM26679.1| phage terminase large subunit [Pseudoalteromonas phage H105/1] Length = 414 Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 41/284 (14%), Positives = 74/284 (26%), Gaps = 30/284 (10%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 A G G GKT + +L P S +++ + Sbjct: 21 AYVGGFGSGKTFVGCMDLLNFFGKHPRTRQGYFGTSYPSIRDIFYP-------------T 67 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 FE +L + + E ++ + Y T S +RP+T DE Sbjct: 68 FEEAALMMGFTVDIKESNKEVHVYRNGFYYGTVICRSMDRPNT---IVGFKVSRALVDEI 124 Query: 201 SGTPDI----INKSILGFFTEL-NPNRFWIMTSNTRRLNGWFYDIF--NIPLEDWKRYQI 253 P I+ + I + T + Y F Sbjct: 125 DTLPKDKATNAWNKIVARLRLKIDGVENGIGVTTTPEGFLFVYSKFKDEPTKSYSMVQAS 184 Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 E + + + + Y + ++G+F + P Y + Sbjct: 185 TYENAEFLPDDYIDTLKETYPEG--LIDAYLMGKFVNLTAGSVYPQ-YGRNKNNSFESIQ 241 Query: 314 LYAPLIMGCDIAGEGGDKTVVVF-RRG--NIIEHIFDWSAKLIQ 354 PLI+G D + R G + +E + Sbjct: 242 PQDPLIVGMDF-NVNDMAACIFVERDGIYHCVEELTKGRDTDYM 284 >gi|92117273|ref|YP_577002.1| phage terminase [Nitrobacter hamburgensis X14] gi|91800167|gb|ABE62542.1| phage Terminase [Nitrobacter hamburgensis X14] Length = 540 Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 43/327 (13%), Positives = 92/327 (28%), Gaps = 58/327 (17%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI-SAGRGIGKTTLNAWMMLWLISTR---PG 107 WQ + + N + K + RG K++L+A + L PG Sbjct: 47 DPWQERIVRRIY----GPRNPDGSRVVKTVVLLIPRGNRKSSLSAAISLLHAIGPEKIPG 102 Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 + A Q + E + M + + ++ + K Sbjct: 103 GECVLAAADRKQAS-IAFKEAVDVVRM----DKRLVSATRIYDAF----------NSAKK 147 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIM 226 ++ E H + DE + + ++ ++ + + Sbjct: 148 IVLKKGGSFIETISSDAGTAHGKSIALLVADELAQWRGTDLWIALKSSLPKVKDSLLVVA 207 Query: 227 TSNTRRLNGWFYDIFNIPLE----------------------DWKRYQIDTRTVEGIDSG 264 T++ R + ++I + + DWK + R G+ G Sbjct: 208 TTSGRGQDNLAWEIVDRARKVATGEINDPSMLPILFETDAGADWKDEALLYRANPGLTLG 267 Query: 265 F--------HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE-AMSREAIDDLY 315 + D+ + L + F+ +E A + Sbjct: 268 YQDISGLRQLVREAETSMTARDMVQNLHLNVWLDSSAAPFVDMTVYDEGAGEIDLAALEG 327 Query: 316 APLIMGCDIAGEGGDKTVV--VFRRGN 340 P +G D++ D +V+ FR G+ Sbjct: 328 EPCWLGVDLS-SSIDLSVIVAAFRDGD 353 >gi|304440418|ref|ZP_07400307.1| PBSX family phage terminase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371170|gb|EFM24787.1| PBSX family phage terminase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 388 Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 33/264 (12%), Positives = 72/264 (27%), Gaps = 25/264 (9%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 GR GK++ A ++ I P ++++C+ L+ + + ++ + + L +F+ Sbjct: 4 RGGRASGKSSFIAQEIILDIIKYP-ITVLCVRKVGNTLQESCYEQIKEAIDQLNLGEYFK 62 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-AS 201 + L + + +I R + + ++ +E A Sbjct: 63 LNISPLK------------ITYTPRGNSIIFRGADDPAKIKSIKMAKYPIARLWIEELAE 110 Query: 202 GTPDIINKSILGFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDWKRYQID 254 + I + T N R W + E+ + Sbjct: 111 FKTEDEVSMIENSILRGELEDGLEYKFYYTYNPPKRKQSWVNKRYETTFLAENTFVHHST 170 Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314 I F R E LG+ +P + + Sbjct: 171 YLDNPYISQAFKNEAEHIKNTKPLKYRWEYLGEPIGSG---VVPFDNLVFREISTKELLN 227 Query: 315 YAPLIMGCDIAGEGGDKTVVVFRR 338 + + G D G D + Sbjct: 228 FDNIRQGID-WGYANDPFAFIRLH 250 >gi|282547289|gb|ADA82346.1| putative terminase [Escherichia phage K1ind1] Length = 416 Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 32/284 (11%), Positives = 67/284 (23%), Gaps = 28/284 (9%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 A G G GKT + +L + PG + + +++ + + ++L Sbjct: 21 AYVGGFGSGKTFVGCLDLLTFMLKHPGTRLGYFGPTYPAIRDIFYPTFEEAANLLGLDVL 80 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 E++ D A DE Sbjct: 81 V---------KSGDKEVVVTCGKTVLGTVICRSM-------DNPGSIVGFKIAAAVVDEL 124 Query: 201 SGTPDIINKSILGFFTELNPNRF-----WIMTSNTRRLNGWFYDIF-NIPLEDWKRYQID 254 + I + T + Y F P + Q Sbjct: 125 DVLSREKAELAWNKIVARMRLVIPGVTNHISVTTTPEGFKFVYAKFKENPTPSYSMVQAS 184 Query: 255 TRTVEGI-DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 T + + Y + + + G+F + + Y + + Sbjct: 185 THENARFLPPDYISSLTETY--PAQLINAYLNGEFVNLTSGSVY-YAYDRRKHRSKEVIQ 241 Query: 314 LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK-LIQET 356 L +G D + V +R + + + +T Sbjct: 242 PGDTLYIGQDFNVTKN-ASAVYVQRKDGWHAVAELKGLFDTPDT 284 >gi|291460129|ref|ZP_06599519.1| phage terminase, large subunit, PBSX family [Oribacterium sp. oral taxon 078 str. F0262] gi|291417470|gb|EFE91189.1| phage terminase, large subunit, PBSX family [Oribacterium sp. oral taxon 078 str. F0262] Length = 408 Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 32/249 (12%), Positives = 76/249 (30%), Gaps = 18/249 (7%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISAG-RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119 ++ N + T + + G RG K+ A M++ + P S +C+ Sbjct: 4 SLQEVVGKNYVDFWNTKKRYRVCKGSRGSKKSKTTALNMIYRLYRYPESSGLCVRRYANT 63 Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 L++++++++ + L +F+ L + + + Sbjct: 64 LRDSVFSDLKWAIHRLQLDAYFDCLVSPLQI-----------VRRSTGQKILFRGLDESL 112 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF---WIMTSNTRRLNGW 236 + + V+ +EA + + P + +T N W Sbjct: 113 KITSISVERGC-LCFVWIEEAYEVAEDDFNKLDMSIRGEVPEGYFKQLTLTFNPWSATSW 171 Query: 237 F-YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN 295 F+ P + + E +D + RIE G++ Sbjct: 172 LKARFFDAPDDTIFTKTTTWQCNEWLDDADRHIFEMMRRQNPRRYRIEGDGEW-GIAEGL 230 Query: 296 FIPHNYIEE 304 P++ +E+ Sbjct: 231 IYPNHRMED 239 >gi|332654528|ref|ZP_08420271.1| phage terminase, large subunit, PBSX family [Ruminococcaceae bacterium D16] gi|332516492|gb|EGJ46098.1| phage terminase, large subunit, PBSX family [Ruminococcaceae bacterium D16] Length = 418 Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 32/240 (13%), Positives = 63/240 (26%), Gaps = 24/240 (10%) Query: 87 GIGKTTLNA-WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 GKT W +S + S ++ L +E+ L L Sbjct: 36 RSGKTLCTGLSFFCWAMSCYQDKTFALCGKSIPSVRRNLLSELLPILRQLGFSCR----- 90 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 + + H + T + + DE + P Sbjct: 91 ---------ERASRNQLTVTMGHRSNTFYLFGGLDERSAALVQGITLAGALLDEVALMPR 141 Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT--RTVEGIDS 263 + + + W N WFY + E+ K ++ + Sbjct: 142 SFVEQVCARCSVEGSR-LWFS-CNPESPAHWFYQEWIQKAEEKKVLRLSFAMTDNPSLSP 199 Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323 E + + R +LG++ ++ + + RE D+ P + CD Sbjct: 200 AMLERYRTMFQG--AFYRRFVLGEWVN-AEGLVY--DFFSQDLVREPPLDVSGPFYVSCD 254 >gi|110005055|emb|CAK99386.1| putative prophage terminase large subunit protein [Spiroplasma citri] Length = 568 Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 38/323 (11%), Positives = 80/323 (24%), Gaps = 64/323 (19%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI- 110 WQ F+EA+ N + GRG GKT L + + L + + Sbjct: 81 ELWQKAFLEALYGFYDKKTNLRRFKEALLIV--GRGNGKTALASAIALKSLILDNEANAE 138 Query: 111 -ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 IA Q K + + + D + Sbjct: 139 LYSIATKRDQAKRV-------------------YEEMRRMIFINPNLNKILKVKRDKIEF 179 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMTS 228 + +T + V DE + I + + ++T+ Sbjct: 180 IHNNSFFQPLSSET-KTLDGLNPYFVVLDEVAMMEKRDIYDVMRTATAKRKDYLMLLITT 238 Query: 229 NTRRLNGWFYDIFNIP----------------------LEDWKRYQIDTRTVE------- 259 N F + ++ +WK + + Sbjct: 239 NGSIRENIFDERYSYAEKVLENTIKDNKFLPWIYELDERNEWKNFNNLYKANPNLGISKY 298 Query: 260 --GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA----MSREAIDD 313 + + E +I+ + + + + +E ++ + Sbjct: 299 IDNFKAEWQEALITPTQQPNFLIKH---CNLKSNLDSALFSRLDLETKNNKIINTDEYLI 355 Query: 314 LYAPLIMGCDIAGEGGDKTVVVF 336 +G D++ D + VVF Sbjct: 356 KNRICTIGIDLSKT-NDLSAVVF 377 >gi|298480040|ref|ZP_06998239.1| PBSX family phage terminase [Bacteroides sp. D22] gi|298273849|gb|EFI15411.1| PBSX family phage terminase [Bacteroides sp. D22] Length = 476 Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 37/275 (13%), Positives = 70/275 (25%), Gaps = 28/275 (10%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G K+ A +L++ PG ++ + K + Sbjct: 61 GGAKSWTGAVWLLFMCLCYPGSKWFIGRAELKRITQSTLITFYKVCNQYGVDDTL----- 115 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + + + + + + + +E Sbjct: 116 ------YKYNGQYNYIEFFNGSRIDLLDLQYKPGDPLYERYGSIEYTGGWIEEGGEVNFG 169 Query: 207 INKSILGFF-----TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR----- 256 ++ EL R +T N ++ W YD F P + + + Sbjct: 170 AYDTLKTRIGRHLNNELGLRRKLFITCNPKK--NWMYDTFYKPDKKGELPEYMYYLACLV 227 Query: 257 -TVEGIDSGFHEGIISRYGLDSDVARIEILGQFP-QQEVNNFIPHNYIEEAMSREAIDDL 314 ID + EG+ D + G + N H+ I E + Sbjct: 228 QENPFIDPDYIEGLK--TTKDKVKRERLLKGNWEYDDNPNALCSHDAICEIFGNKISIKT 285 Query: 315 YAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS 349 I G DIA G D + G I + + Sbjct: 286 GTNYITG-DIARFGADYARLAVWDGWHIIELQCFP 319 >gi|139473519|ref|YP_001128235.1| phage terminase [Streptococcus pyogenes str. Manfredo] gi|134271766|emb|CAM29999.1| putative phage terminase [Streptococcus pyogenes str. Manfredo] Length = 471 Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 40/298 (13%), Positives = 77/298 (25%), Gaps = 44/298 (14%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ + + + + R GKT + + LW + G+ I+ Sbjct: 43 PWQENMLIPIMAVDEDGLWVHQKYGYAI----PRRNGKTEVVYIVELWAL--HKGLKILH 96 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 A+ + + +V K+L M + + + + + Sbjct: 97 TAHRISTSH-ASFEKVKKYLEMSGYVD--------------GEDFISNKAKGQERIEFKS 141 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR- 231 + R T G + DEA ++ T+ + IM Sbjct: 142 SGAVIQFRTRTSNGGLGEGFDLLIIDEAQEYTSEQESALKYTVTDSDNPMT-IMCGTPPT 200 Query: 232 --------------------RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271 R +GW + I + Sbjct: 201 MVSTGTVFEAYRKDCLKGNKRYSGWAEWSVDEMQPIHDVKSWYIANPSMGFHLNERKIEA 260 Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329 G D I+ LG +P + I + E + +L + L +G +G Sbjct: 261 ELGEDEIDHNIQRLGYWPSFNQKSVISEKEW-AKLKVEQVPELKSKLFVGIKFGQDGN 317 >gi|258543723|ref|YP_003189156.1| hypothetical protein APA01_26850 [Acetobacter pasteurianus IFO 3283-01] gi|256634801|dbj|BAI00777.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01] gi|256637857|dbj|BAI03826.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-03] gi|256640911|dbj|BAI06873.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-07] gi|256643966|dbj|BAI09921.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-22] gi|256647021|dbj|BAI12969.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-26] gi|256650074|dbj|BAI16015.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-32] gi|256653064|dbj|BAI18998.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656118|dbj|BAI22045.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-12] Length = 469 Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 38/294 (12%), Positives = 80/294 (27%), Gaps = 43/294 (14%) Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWM--MLWLISTRPG-------MSIICIANSE 117 + + A+ GR GK+ + A + L + ++ IA Sbjct: 51 TGRTDLPLEAFRRAALICGRRAGKSRVLALLGTCLATLKDYRPYLSAGEVATVGVIAADR 110 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177 Q + + V +S++P ++ + + + I T S Sbjct: 111 KQARTI-FRYVRGLISLVPE------------MEAEVTRETDEIIEMAGRRVVIEIGTAS 157 Query: 178 EERPDTFVGPHNTHGMAVFNDEASGT--------PDIINKSILGFFTELNPNRFWIMTSN 229 F AV DE + + I +++ + + + S+ Sbjct: 158 ------FRATRGYTYAAVLCDEIAFWRDDSSANPDEEILRALRPGLATIPGSMLLLA-SS 210 Query: 230 TRRLNGWFYDIF--NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287 G + F + T E + Y D A E + Sbjct: 211 PYARRGVLWKTFKRYYGQDGATTLVWKAATREMNPEFDVQEEQEAYEEDPAAAAAEYGAE 270 Query: 288 FPQQEVNNFIPHNYIEEAM---SREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338 F + ++ +F+ +E E + + D +G D + Sbjct: 271 F-RSDIASFVAPEVVEACTTVGRYELPRNSQHRYVAFVDPSGGSSDSMTLAIAH 323 >gi|289167314|ref|YP_003445583.1| terminase large subunit [Streptococcus mitis B6] gi|288906881|emb|CBJ21715.1| terminase large subunit [Streptococcus mitis B6] Length = 418 Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 37/273 (13%), Positives = 76/273 (27%), Gaps = 25/273 (9%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 +P I GRG GK++ ++ + R ++ +CI ++ L+ +++ ++ +S Sbjct: 22 DPKILHVVEKGGRGSGKSSDLGHTII-QLIMRYPVNAVCIRKTDNTLEQSVYEQLKWAIS 80 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 H F++ L + + I R + + Sbjct: 81 EQGVSHLFKINKSPLK------------ITYIPRGNYIIFRGAQDPERIKSLKDSRFPFA 128 Query: 194 AVFNDE-ASGTPDIINKSILGFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFNI--PL 245 + +E A + K+I + + N R W + Sbjct: 129 IGWIEELAEFKTEDEVKTITNSLLRGELDDGLFYKFFYSYNPPKRKQSWVNKKYESVIQP 188 Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA 305 + + I F E + R E LG+ P + Sbjct: 189 PNTHVHHSTYLDNPYISQAFIEEAEATRERSEKRYRWEYLGEAIGSG---VAPFENLVFR 245 Query: 306 MSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338 + + + G D G D V Sbjct: 246 KITDEEIARFDNIRQGNDF-GYANDPLAFVRWH 277 >gi|167763812|ref|ZP_02435939.1| hypothetical protein BACSTE_02192 [Bacteroides stercoris ATCC 43183] gi|167697928|gb|EDS14507.1| hypothetical protein BACSTE_02192 [Bacteroides stercoris ATCC 43183] Length = 476 Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 37/275 (13%), Positives = 70/275 (25%), Gaps = 28/275 (10%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G K+ A +L++ PG ++ + K + Sbjct: 61 GGAKSWTGAVWLLFMCLCYPGSKWFIGRAELKRITQSTLITFYKVCNQYGVDDTL----- 115 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + + + + + + + +E Sbjct: 116 ------YKYNGQYNYIEFFNGSRIDLLDLQYKPGDPLYERYGSIEYTGGWIEEGGEVNFG 169 Query: 207 INKSILGFF-----TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR----- 256 ++ EL R +T N ++ W YD F P + + + Sbjct: 170 AYDTLKTRIGRHLNNELGLRRKLFITCNPKK--NWMYDTFYKPDKKGELPEYMYYLACLV 227 Query: 257 -TVEGIDSGFHEGIISRYGLDSDVARIEILGQFP-QQEVNNFIPHNYIEEAMSREAIDDL 314 ID + EG+ D + G + N H+ I E + Sbjct: 228 QENPFIDPDYIEGLK--TTKDKVKRERLLKGNWEYDDNPNALCSHDAICEIFGNKISIKT 285 Query: 315 YAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS 349 I G DIA G D + G I + + Sbjct: 286 GTNYITG-DIARFGADYARLAVWDGWHIIELQCFP 319 >gi|23335598|ref|ZP_00120832.1| hypothetical protein Blon03000707 [Bifidobacterium longum DJO10A] gi|189440021|ref|YP_001955102.1| phage terminase large subunit [Bifidobacterium longum DJO10A] gi|189428456|gb|ACD98604.1| Phage terminase large subunit [Bifidobacterium longum DJO10A] Length = 477 Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 39/288 (13%), Positives = 70/288 (24%), Gaps = 44/288 (15%) Query: 49 SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108 + WQ + + + +S R GKT W+ + + PGM Sbjct: 34 DRFDVWQRQINRIILAKSADG----FWSARNTVLSIPRQTGKTYDIGWVAIHRAARTPGM 89 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 I+ A + +K+T + S+ EM L G ++ + + Sbjct: 90 RIVWTAQHFSVIKDT-------FESLCAIVLRPEMSGLVDPDHGISLAAGKEEIRFRNGS 142 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 + DEA D S+L + I Sbjct: 143 RIFFRARERGALRGV------KKIALLVIDEAQHLSDSAMASMLPTQNRAWNPQT-IYMG 195 Query: 229 NTRRLNG------------------------WFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264 + D PL+ + + + Sbjct: 196 TPPGPRDNGEAFTRLRDKARAGRTHSTLYVEFTADRDADPLDRQQWRKANPSYPSHTSDE 255 Query: 265 FHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + D R E LG + + ++ I EEA Sbjct: 256 SIANLWENLTGDD--FRREALGIWDEHALSRAIDRRQWEEATIERRRP 301 >gi|320535714|ref|ZP_08035802.1| hypothetical protein HMPREF9554_00523 [Treponema phagedenis F0421] gi|320147420|gb|EFW38948.1| hypothetical protein HMPREF9554_00523 [Treponema phagedenis F0421] Length = 487 Score = 65.4 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 33/251 (13%), Positives = 63/251 (25%), Gaps = 28/251 (11%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + GRG GKT + + + + ++++ + S P Sbjct: 65 LRCGRGWGKTRTAGQTFIEAVKAGY-KRLSLCGATAEEVRDIMINGESGIAQYCPPELGM 123 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + + K + S ++ DE Sbjct: 124 DYKP------------------SQKKIFFKNGAVVSIFYGSEPEKSRGAQSDFIWCDEIH 165 Query: 202 GT--PDIINKSILGFFTELNPNRFWIMTSNT-RRLNGWFYDIFNIPLEDWKRYQI---DT 255 P+ +++ N I+TS + + Sbjct: 166 KWQYPEETFDNLILGLRLGNNP-LCIVTSTPKPTAFAKKLEKMTDEKGNPCVTTTVGSTY 224 Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY 315 V+ + F IIS+Y +A E+ Q N +IE E + Sbjct: 225 SNVDNLSKKFFSTIISKYKGT-RLALQELFAQILDDNPNALFKKEWIEYNRVDELPLSVN 283 Query: 316 A-PLIMGCDIA 325 +I D A Sbjct: 284 RYRVITSVDPA 294 >gi|269119880|ref|YP_003308057.1| phage terminase, large subunit, PBSX family [Sebaldella termitidis ATCC 33386] gi|268613758|gb|ACZ08126.1| phage terminase, large subunit, PBSX family [Sebaldella termitidis ATCC 33386] Length = 416 Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 34/261 (13%), Positives = 74/261 (28%), Gaps = 26/261 (9%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 ++ + RG K+ A +++ + + + I L+++ ++++ + L Sbjct: 21 KRYRV-LKGSRGSKKSKTTALWIIYNMMKHKESNTLVIRKVFNSLRDSCYSDLLWAIERL 79 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 H ++ L + I R + T + + V Sbjct: 80 GVSHLWKSTKSPL------------ELVYKPTGQKILFRGLDDPLKLTSITVEKGYLCWV 127 Query: 196 FNDEA-SGTPDIINKSILGFFTELNPNRFW---IMTSNTRRLNGWF-YDIFNIPLEDWKR 250 + +EA + + P W T N W F++ ED Sbjct: 128 WIEEAYELMSEDAFNKLDLSIRGKLPEHLWKQITFTFNPWNEKHWLKARFFDVEDEDILA 187 Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310 + E +D + + R+E ++ I I E + Sbjct: 188 LTTTYKINEFLDDDDRKVFEKMKRDNPKRYRVEGEAEWG-------IAEGLIFENWEEKE 240 Query: 311 IDDLYAPLIMGCDIAGEGGDK 331 D G ++ G D Sbjct: 241 FDYREISKRKGV-VSRFGLDF 260 >gi|256819733|ref|YP_003141012.1| hypothetical protein Coch_0896 [Capnocytophaga ochracea DSM 7271] gi|256581316|gb|ACU92451.1| hypothetical protein Coch_0896 [Capnocytophaga ochracea DSM 7271] Length = 450 Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 26/274 (9%), Positives = 74/274 (27%), Gaps = 30/274 (10%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GK+ + ++L G L+ + + L+ Sbjct: 38 GGGKSFIGCSLILADALMYAGTQYFIARKQLNDLRRFTIPSIHEVLNGWG---------- 87 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + W + + + + + + + +E Sbjct: 88 -IPQEAWKYNGQDNYFELYNSSRVLLLDCKYLPSDPQYQRLGSMQFTRGWIEEGGEFDYD 146 Query: 207 INKSILGFF-----TELNPNRFWIMTSNTRRLNGWFYDIFNIPLE------DWKRYQIDT 255 ++ E N ++T+N + + Y F P + Q Sbjct: 147 SYSNLKISIGRWKNREYNLKGKLLITANPSK--NFLYKEFYTPYKEGTLNKRRAFIQALP 204 Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN--NFIPHNYIEEAMSREAIDD 313 + + + + + + + +L + + + + ++ I + + + Sbjct: 205 YDNKMLPKEYIQNLENTLRGAE---KQRLLNGLWEYDDDPNSLCDYDKILAIFNNDQLPK 261 Query: 314 LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347 + DIA G D V+ +G + ++ Sbjct: 262 ESTTYLTA-DIARFGSDLCVIGVWQGWELIEVYT 294 >gi|308173233|ref|YP_003919938.1| PBSX terminase large subunit [Bacillus amyloliquefaciens DSM 7] gi|307606097|emb|CBI42468.1| PBSX terminase (large subunit)) [Bacillus amyloliquefaciens DSM 7] gi|328553846|gb|AEB24338.1| PBSX terminase (large subunit) [Bacillus amyloliquefaciens TA208] gi|328911299|gb|AEB62895.1| PBSX terminase (large subunit) [Bacillus amyloliquefaciens LL3] Length = 432 Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 35/280 (12%), Positives = 73/280 (26%), Gaps = 55/280 (19%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + G G K+ A ++ + + + + +++ +A + L H Sbjct: 24 LVGGYGSSKSYHTALKIILKLLC-EKRTALVVREVFDTHRDSTFALFEDIIEELELGHAV 82 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + S + + + + + P H H ++ +E S Sbjct: 83 KAVSSPM------------QLRFANGSRIMFKGM---DNPAKLKSIH--HISLIWIEECS 125 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-------------------- 241 K ++G + I T+N + W Y F Sbjct: 126 EVKYEGFKELIGRLRHPELSLHMICTTNPVGTSNWTYRHFFRDEQKKRFVLDDHTLYEKG 185 Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF----- 296 + D + + + + + S D D+ RI GQF + F Sbjct: 186 TVVKGDTYYHHSTACDNLFLLKSYIKQLDSLRQYDPDLYRIARKGQFGVNGIRVFPQFQV 245 Query: 297 ------------IPHNYIEEAMSREAIDDLYAPLIMGCDI 324 I M + A + + D Sbjct: 246 MEHTEVTERIAAIRRPLFRTGMDFGFEESYNAVIRLAVDP 285 >gi|300775654|ref|ZP_07085515.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] gi|300505681|gb|EFK36818.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] Length = 475 Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 28/275 (10%), Positives = 70/275 (25%), Gaps = 30/275 (10%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G K+ A ++ P S +L+ + K Sbjct: 55 GGAKSWTGAAWLMLSALAYPDTKWFIGRESLKRLRESTLITFFKVAKAY----------- 103 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + + + + + + + + + +E Sbjct: 104 KIPKNIFKYNGQDHYIQFTNGSRIDLLDLRYLPSDQLYERYGSLEYTGGWIEEGGEINFG 163 Query: 207 INKSILGFF-----TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW------KRYQIDT 255 ++ E +T N ++ W Y F P+++ K Q Sbjct: 164 AYDTLKTRIGRHMNEEYGLKPKIFVTCNPKK--NWMYSYFYKPMKEGLLKLKQKFIQAFV 221 Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE--AMSREAIDD 313 + I + + E + S D + G + + +N + + + + Sbjct: 222 QENPFITTDYIEQLESTT--DKAKRERLLKGNW--EYDDNPYKLTIYDRILDLWKNDHIE 277 Query: 314 LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348 + D+A G D V + + ++ Sbjct: 278 KKGRKYITADVARFGSDLATVGVWEDWDLIEVHEF 312 >gi|94317773|gb|ABF15050.1| putative prophage terminase large subunit [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 214 Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 21/204 (10%), Positives = 60/204 (29%), Gaps = 21/204 (10%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GR K+ A + ++ + + C + +++ +++ + + RH F + Sbjct: 30 GGRSSSKSWDAAGFAI-FLANKYSLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRI 88 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + + + + + ++ +EA Sbjct: 89 LNNKIINRV-------------TGSEFVFYGLWR----NIEEIKSLEGIDVLWLEEAHAL 131 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRYQIDTRTVEGID 262 + K + + ++I N + + + F P ED +I+ + Sbjct: 132 TEYQWKILEPTIRKEGSECWFIF--NPGLVTDFVWRNFVVDPPEDTLIRKINYDENPFLS 189 Query: 263 SGFHEGIISRYGLDSDVARIEILG 286 + I + D + G Sbjct: 190 DTMLKVIDAARHRDPEGFVHVYEG 213 >gi|163758712|ref|ZP_02165799.1| prophage MuMc02, terminase, ATPase subunit, putative [Hoeflea phototrophica DFL-43] gi|162284002|gb|EDQ34286.1| prophage MuMc02, terminase, ATPase subunit, putative [Hoeflea phototrophica DFL-43] Length = 460 Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 47/278 (16%), Positives = 84/278 (30%), Gaps = 35/278 (12%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMML----WLISTRPGMSIICIANSETQLKNTLWAEVS 129 +P FK + A R GKT ++ + ++ E Q + + V Sbjct: 18 DPARFKIGMFA-RQTGKTFTTTLEVVDDCFAAALASRRQRWVILSRGERQAREAMNEGVK 76 Query: 130 ---KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 K + H ++ Q +L S T R +S Sbjct: 77 LHAKAYDLAIEAHEYDWQGQEGSYRAMEVDLPHGSKITALPANPDTARGFSAN------- 129 Query: 187 PHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244 VF DE + D I K++ + R TS FY++ Sbjct: 130 --------VFLDEFAFHKDSGAIWKALFPVISAGWKLRI---TSTPNGKGNKFYELMTAE 178 Query: 245 LEDWKRYQID-TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI- 302 + W ++++D R V E + D D E ++ + ++ + I Sbjct: 179 GDRWSKHEVDIYRAVADGLPRDIEELREGLA-DEDAWAQEYELKWLDEAS-AWLSYELIS 236 Query: 303 --EEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338 E+ + + P +G DI D V+ Sbjct: 237 SVEDERAGDPYLYQGGPCYVGRDIGRR-NDLHVIWVWE 273 >gi|210632155|ref|ZP_03297229.1| hypothetical protein COLSTE_01123 [Collinsella stercoris DSM 13279] gi|210159703|gb|EEA90674.1| hypothetical protein COLSTE_01123 [Collinsella stercoris DSM 13279] Length = 561 Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 35/291 (12%), Positives = 77/291 (26%), Gaps = 21/291 (7%) Query: 43 KPLEHFSQPHRWQLEFMEAVD-VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101 P E Q + +F + ++ + + GRG K++ + ++ Sbjct: 122 LPEERAEQRGEFTRDFALLIGRDFFRPHMLMATGAQTEFWCKGGRGSLKSSWASIELVRH 181 Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161 I PG + + L++ ++A+V + L +EM +L Sbjct: 182 IEDNPGEHAAAVMKRKNSLRDAVYAQVVWAIHQLELDDEYEMPVSTLKIR---------- 231 Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNP 220 + + P ++ +E +++ Sbjct: 232 -KKSTGQVIFFAGCDDPHKSKGLKPPFGF-IGFLWFEECDQFKGMSELRTVRQSAARGGE 289 Query: 221 NRFWIMTSNTRRLNGWFYDIFNIPLEDW--KRYQIDTRTVE--GIDSGFHEGIISRYGLD 276 + T N R + + D + + + + F D Sbjct: 290 RAIVVYTYNPPRTRDNWANKEADRRRDAGQEVFDSCYTDAPPEWLGAQFIADAEDLRQTD 349 Query: 277 SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE 327 R E LG+ P +E +A + + G D Sbjct: 350 EQAYRHEYLGE-PVGYGGQIFDR--VEFREVTDAEIASFERVHAGQDFGWF 397 >gi|225419807|ref|ZP_03762110.1| hypothetical protein CLOSTASPAR_06147 [Clostridium asparagiforme DSM 15981] gi|225041548|gb|EEG51794.1| hypothetical protein CLOSTASPAR_06147 [Clostridium asparagiforme DSM 15981] Length = 686 Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 30/245 (12%), Positives = 70/245 (28%), Gaps = 19/245 (7%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 GRG K++ + ++ LI + M + + L+++++ ++ + L F Sbjct: 306 PGGRGSTKSSFISMEVIDLIMSHEDMHAVVMRQVADTLRSSVYQQILWAIEALNLTDEFR 365 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-S 201 + + S I R + V + ++ +E Sbjct: 366 ATVSPM------------EITRISTGQKIYFRGADDPGKVKSVKVPFGYIGILWLEELDQ 413 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRL-NGWFYDIFNIPLEDWKRYQIDTRTVE- 259 + I + + N + + W IP + + V Sbjct: 414 FVGPESVRKIEQSVIRGGDVAYIFKSFNPPKSASNWANKYIKIPKDSRLVTESTYLDVPQ 473 Query: 260 -GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318 + F + +SD E +G + + I E + + + Sbjct: 474 KWLGKPFLDEAEFLKETNSDAYENEYMGV-ANGSGGSVFDNVKIRE--ITDDEIAQFDHV 530 Query: 319 IMGCD 323 + G D Sbjct: 531 LNGVD 535 >gi|262193957|ref|YP_003265166.1| hypothetical protein Hoch_0641 [Haliangium ochraceum DSM 14365] gi|262077304|gb|ACY13273.1| protein of unknown function DUF264 [Haliangium ochraceum DSM 14365] Length = 478 Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 41/367 (11%), Positives = 95/367 (25%), Gaps = 86/367 (23%) Query: 9 QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQP---HRWQLEFMEAVDVH 65 +K EQEL + A WG + +P R+Q+ F+ Sbjct: 7 KKNEQELSD--WLAN-------------EWGFLAGLAKFDDEPVTLERYQMAFLRN---- 47 Query: 66 CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW 125 + F+ ++ R +G + + A L R + + ++ + K + Sbjct: 48 ---------RSRFR-WVTKSRQVGFSFVFALEALARCHLRDKHTAVFVSYNLEDAKEKVL 97 Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185 + LP + + +++ + + R + Sbjct: 98 -IARQIHEELPLAYQKRL-------------VVDSKTELAFESNAANKRLSRIISAPS-K 142 Query: 186 GPHNTHGMAVFNDEASG--TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243 P G V+ DE + + + S G F++I Sbjct: 143 APRGKKGD-VYLDELAHYVLDREVYTGSTALILRSHGQLSSC--STPLGRRGIFWEISTE 199 Query: 244 PLEDWKRYQID---TRTVEGIDSGFHEGIISRYGLDSDV--------------------- 279 L + + D + + ++ Sbjct: 200 ELRKYPHHTRDEVPWWRCRFFCIDIDRAMREAPHMPTEERVAAFGTQAIAQQLDSLALED 259 Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREA--------IDDLYAPLIMGCDIAGEGGDK 331 + E F + ++ P+ I S + + + ++ G D+ D Sbjct: 260 FQQEFECSFVDESY-SYYPYELILPCTSEDLVLAGDFTDLPEPEGRIVAGFDVGRT-RDH 317 Query: 332 TVVVFRR 338 + + Sbjct: 318 SELAVFE 324 >gi|291335056|gb|ADD94686.1| hypothetical protein [uncultured phage MedDCM-OCT-S08-C620] Length = 233 Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 53/172 (30%), Gaps = 7/172 (4%) Query: 183 TFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTE-LNPNRFWIMTSNTRRLNGWFYDI 240 T+ + AV DEA +++ + N + T + W +D Sbjct: 7 TYQRLRGQNLCAVGFDEADTVNKRDAEQAMNMALARLRSGNVQQFYATTTPEGHSWAFDT 66 Query: 241 FN-IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299 F ED + + T + GF + ++ Y + + + G F Sbjct: 67 FEKNAKEDTRLIKARTADNPYLPDGFIDSLLENY--PPQLIQAYLNGNFCNLTTGQVYDK 124 Query: 300 NYIEEAM-SREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350 + + D PL +G D G V+ GN I + + Sbjct: 125 FNRNTHVLQNDPYVDDNEPLRIGIDF-NIGNMNAVIGVAVGNKFMVIDEIAK 175 >gi|217961103|ref|YP_002339671.1| hypothetical protein BCAH187_A3729 [Bacillus cereus AH187] gi|229140322|ref|ZP_04268877.1| DNA packaging protein Gp17 [Bacillus cereus BDRD-ST26] gi|217067223|gb|ACJ81473.1| conserved hypothetical protein [Bacillus cereus AH187] gi|228642883|gb|EEK99159.1| DNA packaging protein Gp17 [Bacillus cereus BDRD-ST26] Length = 525 Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 40/293 (13%), Positives = 86/293 (29%), Gaps = 43/293 (14%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 M + ++T +KLE L++ + VL KNFV G P Q Q +F+ Sbjct: 1 MSKKLTTKEKLE------LINNDPVLWLKNFVKITTNTGDY-IPFVVNDQ----QKKFIN 49 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + F I+ R IG +T++ + LW+ RP + + ++ + Sbjct: 50 EMG-------------RFNV-IAKARQIGFSTMSLALCLWMAMNRPRTNYMIVSYKQES- 94 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 +L+ ++ LPH + + D+ Sbjct: 95 STSLFDKLKMMYDDLPHDK---------FKFPKDTQNNRNQLKFDNGSSITLAT------ 139 Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240 T + E + + + + ++ T + + Sbjct: 140 AGGKDVGRGTTYEYILLSEFAFYENQDSILLSAEQALAKSKTSKLVIETTSNGFNSYQTL 199 Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293 F + +Y+ S + + Y + G+ ++ Sbjct: 200 FMNAYKGESKYKAFFF--PFYSSSYAKQFKDDYDEAEIWYKENNKGKRLTKDD 250 >gi|294789839|ref|ZP_06755067.1| phage terminase, large subunit, PBSX family [Simonsiella muelleri ATCC 29453] gi|294482221|gb|EFG29920.1| phage terminase, large subunit, PBSX family [Simonsiella muelleri ATCC 29453] Length = 413 Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 27/247 (10%), Positives = 66/247 (26%), Gaps = 28/247 (11%) Query: 90 KTTLNA-WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148 K+ A + +W + + I+C + +K + AE+ ++ S + Sbjct: 42 KSFNVAKMLAIWGYAET--LRILCTREFQNSIKESFHAELKAAIA-----------SEAF 88 Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208 + + + ++ + R +T + +EA + Sbjct: 89 LENAYDVGVDFIRGKNGTE------FLFKGLRNNTQSIKSLANIDICVIEEAEDISESAW 142 Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL-EDWKRYQIDTRTVEGIDSGFHE 267 + + W++ N ++ F +I+ E Sbjct: 143 EVLEPTIRAPKSE-IWVIW-NPKQRGSATDTRFRQNTPPRSCIVEINHSDNPFFPDVLDE 200 Query: 268 GIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAG 326 + + D G + +Q Y + ++ + G D G Sbjct: 201 QRKYQQKVLDPARYAWIWEGAYYEQSDAQVFAGKYAVREFTPQSDWNGA---YFGLDF-G 256 Query: 327 EGGDKTV 333 D T Sbjct: 257 FSQDPTA 263 >gi|169796738|ref|YP_001714531.1| putative phage terminase [Acinetobacter baumannii AYE] gi|169149665|emb|CAM87555.1| conserved hypothetical protein; putative phage terminase [Acinetobacter baumannii AYE] Length = 437 Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 38/263 (14%), Positives = 74/263 (28%), Gaps = 33/263 (12%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 F+ + AG G GKT + + P + + A + Q+++ + + + Sbjct: 25 MEKKFRAFV-AGFGSGKTWVGCSSLCNKAWEFPKVPLGYFAPTYPQIRDIFFPTIEEV-- 81 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 F+ E ++ + Y T S E+P T Sbjct: 82 ------AFDWG-----LKTKVYETNKEVDIYYGRQYRTTIICRSMEKPAT---IVGFKIG 127 Query: 194 AVFNDE----ASGTPDIINKSILGFFTELNPNRF-WIMTSNTRRLNGWFYDIF------- 241 DE A + I+ + I + T + Y+ F Sbjct: 128 HALIDELDVMAKVKAQQAWRKIIARMRYKQASLLNGIDVATTPEGFKFTYEQFVKEANKS 187 Query: 242 NIPLEDWKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 + + Q T E + + + Y + + GQF P + Sbjct: 188 EAKRKLYGMIQASTYDNEANLPDDYISSLYESY--PPQLISAYLRGQFVNLTSGAVYP-D 244 Query: 301 YIEEAMSREAIDDLYAPLIMGCD 323 + + PL++G D Sbjct: 245 FDRVLNHTDEEIKQGEPLLIGMD 267 >gi|194434522|ref|ZP_03066781.1| conserved hypothetical protein [Shigella dysenteriae 1012] gi|194417234|gb|EDX33344.1| conserved hypothetical protein [Shigella dysenteriae 1012] gi|332093143|gb|EGI98204.1| hypothetical protein SD15574_1959 [Shigella dysenteriae 155-74] Length = 442 Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 35/259 (13%), Positives = 71/259 (27%), Gaps = 29/259 (11%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL---KNTLWAEVSKWLSMLPH 137 A+ GR GKT + + + + + QL + ++ + + Sbjct: 28 AVCCGRRWGKTVMLVNIATSFATRK------FAVPTTGQLIAGRVGIFTAQYRQYQEIWD 81 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH-NTHGMAVF 196 S L+ + + D AV Sbjct: 82 E-----------ISAVLQPLILSQSKNEKRIILRNGGRIDFWVTDNNKLAGCGRKYHAVL 130 Query: 197 NDEASG------TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250 DEA+ +I ++I + + T N + +FY I + + Sbjct: 131 IDEAAFTKSPEMLEEIWPRAIRPTLVDYRGCAWVFSTPNGIDESNFFYAICHDESLGFVM 190 Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310 + T + I E + D V + E L +F + + + + Sbjct: 191 HHAPTSSNPYIPKEELEETEKKS--DPRVWQQEYLAEFVDWSKDALLDVDKLLVDGQPIE 248 Query: 311 IDDLYAPLIMGCDIAGEGG 329 + + D A +GG Sbjct: 249 MPPYCDMIFAVMDTALKGG 267 >gi|295096346|emb|CBK85436.1| Terminase-like family [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 435 Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 39/280 (13%), Positives = 89/280 (31%), Gaps = 33/280 (11%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 A AG G GKT + + + P ++ A + Q+++ + + + Sbjct: 23 AYVAGFGSGKTWVGCGGICKGMWEHPKINQGYFAPTYPQIRDIFYPTIEEV--------A 74 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE- 199 F+ + E ++ + + Y T S E+P + DE Sbjct: 75 FDWGLSVI-----INEGNKEVHFYEGRRYRGTTICRSMEKPGS---IVGFKIGNAMVDEL 126 Query: 200 ---ASGTPDIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIFNIPLED-------W 248 A+ + I+ +++ R I + T + Y F + + + Sbjct: 127 DVMAAAKAQQAWRKIIARMRYKVDGLRNGIDVTTTPEGFKFVYQQFVKAVREKPELSALY 186 Query: 249 KRYQIDTRTV-EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307 Q T + + + ++S Y ++ + + G+F + + + Sbjct: 187 GLIQASTFDNAKNLPPDYISSLLSSY--PDELIQAYLRGKFTNLNSGTIYH-TFNRKLNN 243 Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347 PL +G D G +V +R + + + Sbjct: 244 CSDEIQDGDPLFIGMDF-NVGKMAAIVHVKRNGLPRAVRE 282 >gi|212712878|ref|ZP_03321006.1| hypothetical protein PROVALCAL_03975 [Providencia alcalifaciens DSM 30120] gi|212684570|gb|EEB44098.1| hypothetical protein PROVALCAL_03975 [Providencia alcalifaciens DSM 30120] Length = 436 Score = 64.6 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 46/287 (16%), Positives = 90/287 (31%), Gaps = 34/287 (11%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 P FK A AG G GKT + + + P ++ A + Q+++ + + + Sbjct: 17 MPHKFK-AYVAGFGSGKTWVGCGGICKGMWEFPKINQGYFAPTYPQIRDIFYPTIEEV-- 73 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 +L E ++ + + Y T S E+P+T Sbjct: 74 -----------ALDWGLKVNIVESNKEVHFYEGRRYRGTVICRSMEKPET---IVGFKIG 119 Query: 194 AVFNDEA----SGTPDIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIFNIPLED- 247 DE S + I+ + R I + T + Y F + D Sbjct: 120 NALIDELDVMKSDKAQKAWRKIIARMRYNVAGLRNGIDVTTTPEGFKFVYQQFVKAVRDK 179 Query: 248 ------WKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 + Q T E + + + ++S Y ++ + + GQF Sbjct: 180 PELSTLYGIVQASTFDNEKNLPADYIPSLMSSY--PPELIKAYLKGQFTNLTSGTIYH-T 236 Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347 + + + E + L +G D G +V R + + + Sbjct: 237 FDRKLNNSEEEEQPGETLYIGMDF-NVGKMAGIVHVLRLGLPHAVTE 282 >gi|239504148|ref|ZP_04663458.1| putative phage terminase [Acinetobacter baumannii AB900] Length = 413 Score = 64.6 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 38/263 (14%), Positives = 74/263 (28%), Gaps = 33/263 (12%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 F+ + AG G GKT + + P + + A + Q+++ + + + Sbjct: 1 MEKKFRAFV-AGFGSGKTWVGCSSLCNKAWEFPKVPLGYFAPTYPQIRDIFFPTIEEV-- 57 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 F+ E ++ + Y T S E+P T Sbjct: 58 ------AFDWG-----LKTKVYETNKEVDIYYGRQYRTTIICRSMEKPAT---IVGFKIG 103 Query: 194 AVFNDE----ASGTPDIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIF------- 241 DE A + I+ + I + T + Y+ F Sbjct: 104 HALIDELDVMAMTKAQQAWRKIIARMRFKQAGLLNGIDVATTPEGFKFTYEQFVKEANKS 163 Query: 242 NIPLEDWKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 + + Q T E + + + Y + + GQF P + Sbjct: 164 EAKRKLYGMIQASTYDNEANLPDDYISSLYESY--PPQLISAYLRGQFVNLTSGAVYP-D 220 Query: 301 YIEEAMSREAIDDLYAPLIMGCD 323 + + PL++G D Sbjct: 221 FDRVLNHTDEEIKKGEPLLIGMD 243 >gi|238765410|ref|ZP_04626332.1| hypothetical protein ykris0001_46080 [Yersinia kristensenii ATCC 33638] gi|238696351|gb|EEP89146.1| hypothetical protein ykris0001_46080 [Yersinia kristensenii ATCC 33638] Length = 381 Score = 64.6 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 52/182 (28%), Gaps = 9/182 (4%) Query: 155 AELLEQSMGIDSKHYTITCRTYSEERPDTFVGP-HNTHGMAVFNDEASG------TPDII 207 L+ + + D AV DEA+ +I Sbjct: 28 HPLIASQSKNEKRIILRNGGRIDFWVTDNNKLAGRGRKYHAVLIDEAAFTKSPEMLEEIW 87 Query: 208 NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267 ++I + + T N + +FY I + + ++ T + I E Sbjct: 88 PRAIRPTLVDYRGRAWVFSTPNGIDESNFFYAICHDESLGFVKHHAPTSSNPFIPKDELE 147 Query: 268 GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE 327 + D V + E L +F + + + + + + D A + Sbjct: 148 ETERKS--DPRVWQQEYLAEFVDWSKDALLDIDKLLVDGQPVGVPKHCDVVFAVMDTALK 205 Query: 328 GG 329 GG Sbjct: 206 GG 207 >gi|319949764|ref|ZP_08023789.1| phage terminase [Dietzia cinnamea P4] gi|319436564|gb|EFV91659.1| phage terminase [Dietzia cinnamea P4] Length = 478 Score = 64.6 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 41/311 (13%), Positives = 77/311 (24%), Gaps = 58/311 (18%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 +WQ + + + V P RG GK+T+ A + L + G Sbjct: 39 RQWQRDLVGTLLDEERPLVVWCLP----------RGQGKSTITAALALHHVFMSGIEGAR 88 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 + +A E L S + EL ++ + Sbjct: 89 AVIVAQDERSATRML--------------------STAARMVALNEELDSRAWVYKDRIT 128 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL-GFFTELNPNRFWIMTS 228 ++ P DE +S+L I T Sbjct: 129 IPGTDSHIVALPGEAARIEGEAASLAICDEVGIVRRDAFESLLHSTGKVEGSKLLAIGTP 188 Query: 229 NTR--RLNGWFYDIFNIPLEDWK--RYQIDTRTVEGIDSGFHEGIIS------------- 271 + R D+ + ++ + + E + Sbjct: 189 SPPSWRETSPLLDLVLDGRSNPDNPNLRVVEYSAPVGCAVDDEEAWAVANPGLDDLVQRS 248 Query: 272 ------RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325 R LGQ+ +Q+ F+P +S +++ D + Sbjct: 249 ALRAALPPRSRESEFRRARLGQWVEQDDAAFLPPGLW-PKLSTGVGIPDGQRVVLALDGS 307 Query: 326 GEGGDKTVVVF 336 GD T +V Sbjct: 308 -FNGDATALVV 317 >gi|153953117|ref|YP_001393882.1| hypothetical protein CKL_0480 [Clostridium kluyveri DSM 555] gi|219853766|ref|YP_002470888.1| hypothetical protein CKR_0423 [Clostridium kluyveri NBRC 12016] gi|146345998|gb|EDK32534.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555] gi|219567490|dbj|BAH05474.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 521 Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 34/321 (10%), Positives = 93/321 (28%), Gaps = 52/321 (16%) Query: 8 DQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCH 67 ++ Q+L + + + F+ K L F Q +F+E + + Sbjct: 4 SKETAQKLKYLWEDGHEIEWIETFIKIV----NKDTKLVPFI-LTPEQKKFVEELVKYG- 57 Query: 68 SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127 + R +G + + + + P + + +++ + + N ++ + Sbjct: 58 -------------IVLKSRQLGISVIIIALSIRQCIVYPNSNCLLVSH-DQKSCNAIFDK 103 Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187 + + + LP + Q + + + S Sbjct: 104 LKQQFNSLP-----------MWLKPKENANNRQEIKMANGSKI------SAVCAGNKDVG 146 Query: 188 HNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL 245 V E + P+ SI ++ +T +FY+++ Sbjct: 147 RGDTLHLVHLSEFAFWKMPEKQLNSITQALAPDGK----LIIESTANGLNYFYNLYFQAK 202 Query: 246 ED---WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302 + +K + + + +E + Y ++ +++ + +E + Sbjct: 203 NNENSYKSFFFNWIDGSTLFEKDYENSVEIYKAKNNNELLKVE-ELNDEEKELVNLGATM 261 Query: 303 EEAMSREAIDDLYAPLIMGCD 323 E+ M R G D Sbjct: 262 EQLMWRRLKVASG-----GLD 277 >gi|332799002|ref|YP_004460501.1| phage terminase, large subunit, PBSX family [Tepidanaerobacter sp. Re1] gi|332696737|gb|AEE91194.1| phage terminase, large subunit, PBSX family [Tepidanaerobacter sp. Re1] Length = 417 Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 33/261 (12%), Positives = 69/261 (26%), Gaps = 16/261 (6%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + GRG K++ + ++ + A + ++K+TL V + L+ Sbjct: 30 LKGGRGSTKSSFASLEIILGMMRDAEQREFTNAVALRKVKDTLKDSVFEQLAWAIEILGV 89 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA- 200 W+ + + I R + + + ++ +E Sbjct: 90 GH--------LWHIPQSKLEITYIPTGQKILFRGADKPKKIKSTKVKKGYIKYIWFEELD 141 Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN-GWFYDIFNIPLEDWKRYQIDTRTVE 259 + I T N + + W P K + D R+V Sbjct: 142 EFYGPEELRIINQSLMRGGEIFVVFYTYNPPKSSRSWVNQEAKTPKPGRKVHHSDYRSVP 201 Query: 260 --GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317 + + F + R E +G+ + F E + + Sbjct: 202 EHWLGNVFIADAEHLKKTNEIAYRHEYMGEEVGTGLEVFTNVTLRE---ITDEEIKTFDR 258 Query: 318 LIMGCDIAGEGGDKTVVVFRR 338 + G D G D Sbjct: 259 IKQGLDF-GYAVDPVAFEKMH 278 >gi|293608730|ref|ZP_06691033.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292829303|gb|EFF87665.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 430 Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 38/263 (14%), Positives = 74/263 (28%), Gaps = 33/263 (12%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 F+ + AG G GKT + + P + + A + Q+++ + + + Sbjct: 18 MEKKFRAFV-AGFGSGKTWVGCSSLCNKAWEFPKVPLGYFAPTYPQIRDIFFPTIEEV-- 74 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 F+ E ++ + Y T S E+P T Sbjct: 75 ------AFDWG-----LKTKVYETNKEVDIYYGRQYRTTIICRSMEKPAT---IVGFKIG 120 Query: 194 AVFNDE----ASGTPDIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIF------- 241 DE A + I+ + I + T + Y+ F Sbjct: 121 HALIDELDVMAKVKAQQAWRKIIARMRYKQAGLLNGIDVATTPEGFKFTYEQFVKEANKS 180 Query: 242 NIPLEDWKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 + + Q T E + + + Y + + GQF P + Sbjct: 181 EAKRKLYGMIQASTYDNEANLPDDYISSLYESY--PPQLISAYLRGQFVNLTSGAVYP-D 237 Query: 301 YIEEAMSREAIDDLYAPLIMGCD 323 + + PL++G D Sbjct: 238 FDRVLNHTDEEIKKGEPLLIGMD 260 >gi|260556008|ref|ZP_05828228.1| PBSX family phage terminase, large subunit [Acinetobacter baumannii ATCC 19606] gi|260410919|gb|EEX04217.1| PBSX family phage terminase, large subunit [Acinetobacter baumannii ATCC 19606] Length = 435 Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 38/263 (14%), Positives = 74/263 (28%), Gaps = 33/263 (12%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 F+ + AG G GKT + + P + + A + Q+++ + + + Sbjct: 23 MEKKFRAFV-AGFGSGKTWVGCSSLCNKAWEFPKVPLGYFAPTYPQIRDIFFPTIEEV-- 79 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 F+ E ++ + Y T S E+P T Sbjct: 80 ------AFDWG-----LKTKVYETNKEVDIYYGRQYRTTIICRSMEKPAT---IVGFKIG 125 Query: 194 AVFNDE----ASGTPDIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIF------- 241 DE A + I+ + I + T + Y+ F Sbjct: 126 HALIDELDVMAKVKAQQAWRKIIARMRYKQAGLLNGIDVATTPEGFKFTYEQFVKEANKS 185 Query: 242 NIPLEDWKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 + + Q T E + + + Y + + GQF P + Sbjct: 186 EAKRKLYGMIQASTYDNEANLPDDYISSLYESY--PPQLISAYLRGQFVNLTSGAVYP-D 242 Query: 301 YIEEAMSREAIDDLYAPLIMGCD 323 + + PL++G D Sbjct: 243 FDRVLNHTDEEIKKGEPLLIGMD 265 >gi|215484220|ref|YP_002326447.1| Terminase-like family protein [Acinetobacter baumannii AB307-0294] gi|213985731|gb|ACJ56030.1| Terminase-like family protein [Acinetobacter baumannii AB307-0294] Length = 413 Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 38/263 (14%), Positives = 74/263 (28%), Gaps = 33/263 (12%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 F+ + AG G GKT + + P + + A + Q+++ + + + Sbjct: 1 MEKKFRAFV-AGFGSGKTWVGCSSLCNKAWEFPKVPLGYFAPTYPQIRDIFFPTIEEV-- 57 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 F+ E ++ + Y T S E+P T Sbjct: 58 ------AFDWG-----LKTKVYETNKEVDIYYGRQYRTTIICRSMEKPAT---IVGFKIG 103 Query: 194 AVFNDE----ASGTPDIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIF------- 241 DE A + I+ + I + T + Y+ F Sbjct: 104 HALIDELDVMAKVKAQQAWRKIIARMRYKQAGLLNGIDVATTPEGFKFTYEQFVKEANKS 163 Query: 242 NIPLEDWKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 + + Q T E + + + Y + + GQF P + Sbjct: 164 EAKRKLYGMIQASTYDNEANLPDDYISSLYESY--PPQLISAYLRGQFVNLTSGAVYP-D 220 Query: 301 YIEEAMSREAIDDLYAPLIMGCD 323 + + PL++G D Sbjct: 221 FDRVLNHTDEEIKKGEPLLIGMD 243 >gi|184157353|ref|YP_001845692.1| putative phage terminase [Acinetobacter baumannii ACICU] gi|301345227|ref|ZP_07225968.1| putative phage terminase [Acinetobacter baumannii AB056] gi|301595737|ref|ZP_07240745.1| putative phage terminase [Acinetobacter baumannii AB059] gi|332851175|ref|ZP_08433263.1| phage terminase, large subunit, PBSX family [Acinetobacter baumannii 6013150] gi|332869110|ref|ZP_08438600.1| phage terminase, large subunit, PBSX family [Acinetobacter baumannii 6013113] gi|332875310|ref|ZP_08443140.1| phage terminase, large subunit, PBSX family [Acinetobacter baumannii 6014059] gi|183208947|gb|ACC56345.1| putative phage terminase [Acinetobacter baumannii ACICU] gi|332730195|gb|EGJ61521.1| phage terminase, large subunit, PBSX family [Acinetobacter baumannii 6013150] gi|332732895|gb|EGJ64103.1| phage terminase, large subunit, PBSX family [Acinetobacter baumannii 6013113] gi|332736478|gb|EGJ67475.1| phage terminase, large subunit, PBSX family [Acinetobacter baumannii 6014059] Length = 413 Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 38/263 (14%), Positives = 74/263 (28%), Gaps = 33/263 (12%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 F+ + AG G GKT + + P + + A + Q+++ + + + Sbjct: 1 MEKKFRAFV-AGFGSGKTWVGCSSLCNKAWEFPKVPLGYFAPTYPQIRDIFFPTIEEV-- 57 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 F+ E ++ + Y T S E+P T Sbjct: 58 ------AFDWG-----LKTKVYETNKEVDIYYGRQYRTTIICRSMEKPAT---IVGFKIG 103 Query: 194 AVFNDE----ASGTPDIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIF------- 241 DE A + I+ + I + T + Y+ F Sbjct: 104 HALIDELDVMAKVKAQQAWRKIIARMRYKQAGLLNGIDVATTPEGFKFTYEQFVKEANKS 163 Query: 242 NIPLEDWKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 + + Q T E + + + Y + + GQF P + Sbjct: 164 EAKRKLYGMIQASTYDNEANLPDDYISSLYESY--PPQLISAYLRGQFVNLTSGAVYP-D 220 Query: 301 YIEEAMSREAIDDLYAPLIMGCD 323 + + PL++G D Sbjct: 221 FDRVLNHTDEEIKKGEPLLIGMD 243 >gi|255103207|ref|ZP_05332184.1| hypothetical protein CdifQCD-6_20513 [Clostridium difficile QCD-63q42] Length = 582 Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 24/253 (9%), Positives = 56/253 (22%), Gaps = 45/253 (17%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 A RG+GK+ L + +PG ++ A + Q K ++ + Sbjct: 68 ASRGLGKSWLLGVFCCVIAVLKPGTCVLIAAKRKKQAK--------LLITSKILGDLYLK 119 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 ++ + E + + DE Sbjct: 120 SDT-------LKREIKSFQVNAQEVSIDFWNGSRIEAVVSNDDARGYRANVLIVDEYRMV 172 Query: 204 PDII-NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR------ 256 + N ++ F T + N + + W + Sbjct: 173 DEGTVNDVLVPFLTNPRQPGY---LQNPKYRYMQEENKEIYLSSGWYSQHWSYKKFMETV 229 Query: 257 --------------------TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 + + + + +E G F + + F Sbjct: 230 KGMLSGEDMFACSIPFTCSLEHGLLTKKRILKEMKKESMSDASFMMEYCGVFYNESDDAF 289 Query: 297 IPHNYIEEAMSRE 309 +++ E Sbjct: 290 FKSSWVNPCRVLE 302 >gi|23455748|ref|NP_695057.1| putative terminase [Lactococcus phage r1t] gi|1353546|gb|AAB18704.1| ORF29 [Lactococcus phage r1t] Length = 469 Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 44/325 (13%), Positives = 84/325 (25%), Gaps = 52/325 (16%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ ++ V + + R GKT + + LW + G+SI+ Sbjct: 41 PWQKNLLKEVMAIDEDGLWTHQKFGYSI----PRRNGKTEIVYILELWSLVQ--GLSILH 94 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 A+ + + + ++ K+L + + +S+ + Sbjct: 95 TAHRISTSH-SSYEKLKKYLEDSGYVEGEDFKSIKAKGQ------ERLELIESGGVIQFR 147 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232 RT S + DEA ++ T+ + IM Sbjct: 148 TRTSSGGL--------GEGFDILVIDEAQEYTTEQESALKYTVTDSDNPMT-IMCGTPPT 198 Query: 233 L---------------------NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271 +GW + I + Sbjct: 199 PVSSGTVFTNYRDNTIAGKAKYSGWAEWSVEDVKDIHDVEAWYNSNPSMGYHLNERKIEA 258 Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDK 331 G D ++ LG +P+ + I A+ + + L +G G D Sbjct: 259 ELGEDKLDHNVQRLGYWPKYNQKSVISEQEWN-ALKVNRLPVIKGKLFVGI---KYGNDG 314 Query: 332 TVVVFRRGNIIEHIFDWSAKLIQET 356 V + S K+ ET Sbjct: 315 ANVAM-----SIAVKTLSGKVFVET 334 >gi|256811476|ref|YP_003128845.1| hypothetical protein Mefer_1542 [Methanocaldococcus fervens AG86] gi|256794676|gb|ACV25345.1| hypothetical protein Mefer_1542 [Methanocaldococcus fervens AG86] Length = 531 Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 33/277 (11%), Positives = 71/277 (25%), Gaps = 44/277 (15%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST-------RPG 107 Q E ++ + + S I AG+G GK + + + +++ Sbjct: 74 QKEILKGMAEYPTS------------IILAGKGSGKDFMVSLLFNYMLMKATLKENLYSR 121 Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 ++ + IA + + E W + L + S+ I Sbjct: 122 VNFVNIAPNMELANKVFFKEFKHWFKKCLLWQAVGFEEEKNTGKAP-IRLTKTSVSIGDN 180 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL----------GFFTE 217 ++ ++S + + DE D + Sbjct: 181 IELVSGHSHST-------SFEGMNVLCAVIDE---ISDENFYNAEKLFYQLLSSIKTRFG 230 Query: 218 LNPNRFWIMTS---NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYG 274 + I + L+ Y +F + +T E E Y Sbjct: 231 TDGKLIVITWTRFPTPNPLDDVGYKLFIENQNIDNVFTFKGKTWEINPFRKKEDFADDYE 290 Query: 275 LDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311 + +A+ + P FI ++ M Sbjct: 291 RNPILAKKMYECE-PPDLDAYFIDVAKLDACMVELVP 326 >gi|160898677|ref|YP_001564259.1| hypothetical protein Daci_3236 [Delftia acidovorans SPH-1] gi|160364261|gb|ABX35874.1| protein of unknown function DUF264 [Delftia acidovorans SPH-1] Length = 428 Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 39/280 (13%), Positives = 84/280 (30%), Gaps = 33/280 (11%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 S P F+ + AG G GKT + + P ++ A S Q+++ + + + Sbjct: 17 SLPHKFRAFV-AGFGSGKTWVGCSGLSAHAWEFPRINAGYFAPSYPQIRDIFFPTIEEVA 75 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 R E ++ + Y T S +RP++ Sbjct: 76 HDWGLRTEIR-------------ESNKEVHLYSGRQYRTTVICRSMDRPES---IVGFKI 119 Query: 193 MAVFNDE----ASGTPDIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247 DE A + + I+ ++ + + + T + + F ++D Sbjct: 120 GQALVDELDVMAKQKAEQAWRKIIARMRYNVDGLKNGVDVTTTPEGFKFTHQQFVKAVQD 179 Query: 248 -------WKRYQIDTRTV-EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299 + Q T + + + + + Y + + G F + P Sbjct: 180 KPELAKLYGLIQASTFENAKNLPADYIPSLFDSYPKQ--LIDAYLRGLFVNLTSGSVYP- 236 Query: 300 NYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRG 339 ++ + P+++G D V R G Sbjct: 237 DFDRKLNHSFESLQEGEPVMLGMDFNRLHMAAVAYVLRDG 276 >gi|41179386|ref|NP_958694.1| Bbp25 [Bordetella phage BPP-1] gi|45569518|ref|NP_996587.1| hypothetical protein BMP-1p24 [Bordetella phage BMP-1] gi|45580769|ref|NP_996635.1| hypothetical protein BIP-1p24 [Bordetella phage BIP-1] gi|40950125|gb|AAR97691.1| Bbp25 [Bordetella phage BPP-1] Length = 533 Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 4/82 (4%) Query: 276 DSDVARIEILGQFPQQEVN---NFIPHNYIEEAMSREAIDDLYAPLI-MGCDIAGEGGDK 331 + + G F + IP ++E A +R D AP+ +G D+A G D Sbjct: 290 PEPLRSQMLYGDFNAGIEDDPWQVIPTAWVEAAQARWKRPDRLAPMDSLGVDVARGGRDN 349 Query: 332 TVVVFRRGNIIEHIFDWSAKLI 353 T++ R + + K Sbjct: 350 TILARRHAMWFDVPLTYPGKDT 371 >gi|152975091|ref|YP_001374608.1| hypothetical protein Bcer98_1291 [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023843|gb|ABS21613.1| conserved hypothetical protein [Bacillus cytotoxicus NVH 391-98] Length = 525 Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 35/289 (12%), Positives = 82/289 (28%), Gaps = 39/289 (13%) Query: 5 ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64 ++ ++L L++ + VL +NFV G P Q Q +F+ + Sbjct: 1 MARKPTTAEKLK--LINEDPVLWLQNFVKITTNTGEY-VPFVVNDQ----QKKFINEMG- 52 Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124 F I+ R IG +T++ + LW+ RP + + ++ + +L Sbjct: 53 ------------RFNV-IAKARQIGFSTMSLALCLWMAMNRPRTNYMIVSYKQES-STSL 98 Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184 + ++ LPH + + D+ Sbjct: 99 FDKLKMMYDDLPHDK---------FKFPKDTQNNRNQLKFDNGSSITLAT------AGGK 143 Query: 185 VGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244 T + E + + + + ++ T + +F Sbjct: 144 DVGRGTTYEYILLSEFAFYENQDSILLSAEQALAKSKTSKLVIETTSNGFNSYQKLFMNA 203 Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293 + +Y+ S + + Y + G+ ++ Sbjct: 204 YKGESKYKAFFF--PFYSSSYAKQFKDDYDEAEIWYKANNKGKRLTKDD 250 >gi|76788305|ref|YP_329267.1| prophage LambdaSa03, terminase, large subunit [Streptococcus agalactiae A909] gi|76563362|gb|ABA45946.1| prophage LambdaSa03, terminase, large subunit, putative [Streptococcus agalactiae A909] Length = 471 Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 41/297 (13%), Positives = 80/297 (26%), Gaps = 44/297 (14%) Query: 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 WQ + + N+ + R GKT + + LW + G+ I+ Sbjct: 44 WQENMLIPMMAINEDNLWVHQKYGYAI----PRRNGKTEVVYILELWAL--HKGLKILHT 97 Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173 A+ + + + +V K+L M + + + + + Sbjct: 98 AHRISTSH-SSFEKVKKYLEMSGYVD--------------GEDFISNKAKGQERIEFKSS 142 Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR-- 231 + + R T G + DEA ++ T+ + IM Sbjct: 143 GSVIQFRTRTSNGGLGEGFDLLIIDEAQEYTSEQESALKYTVTDSDNPMT-IMCGTPPTM 201 Query: 232 -------------------RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISR 272 R +GW + I + Sbjct: 202 VSTGTVFESYRKECLKGDRRYSGWAEWSVDEMQPIHDVKSWYVANPSMGYHLNERKIEAE 261 Query: 273 YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329 G D I+ LG +P + I + E + +L + L +G +G Sbjct: 262 LGEDEIDHNIQRLGYWPSFNQKSVISEKEW-AKLKVEQVPELKSKLFVGIKFGQDGN 317 >gi|332089985|gb|EGI95085.1| hypothetical protein SB521682_2096 [Shigella boydii 5216-82] Length = 442 Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 35/259 (13%), Positives = 71/259 (27%), Gaps = 29/259 (11%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL---KNTLWAEVSKWLSMLPH 137 A+ GR GKT + + + + + QL + ++ + + Sbjct: 28 AVCCGRRWGKTVMLVNIATSFATRK------FAVPTTGQLIAGRVGIFTAQYRQYQEIWD 81 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH-NTHGMAVF 196 S L+ + + D AV Sbjct: 82 E-----------ISAVLQPLILSQSKNEKRIILRNGGRIDFWVTDNNKLAGCGRKYHAVL 130 Query: 197 NDEASG------TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250 DEA+ +I ++I + + T N + +FY I + + Sbjct: 131 IDEAAFTKSPEMLEEIWPRAIRPTLVDYRGCAWVFSTPNGIDESNFFYAICHDESLGFVM 190 Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310 + T + I E + D V + E L +F + + + + Sbjct: 191 HHAPTSSNPYIPKEELEETEKKS--DPRVWQQEYLAEFVDWSKDALLDVDKLLVDGQPIE 248 Query: 311 IDDLYAPLIMGCDIAGEGG 329 + + D A +GG Sbjct: 249 MPPYCDMIFAVMDTALKGG 267 >gi|16078323|ref|NP_389140.1| PBSX defective prophage terminase large subunit [Bacillus subtilis subsp. subtilis str. 168] gi|221309110|ref|ZP_03590957.1| PBSX defective prophage terminase (large subunit) [Bacillus subtilis subsp. subtilis str. 168] gi|221313437|ref|ZP_03595242.1| PBSX defective prophage terminase (large subunit) [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318360|ref|ZP_03599654.1| PBSX defective prophage terminase (large subunit) [Bacillus subtilis subsp. subtilis str. JH642] gi|221322633|ref|ZP_03603927.1| PBSX defective prophage terminase (large subunit) [Bacillus subtilis subsp. subtilis str. SMY] gi|1722887|sp|P39786|XTMB_BACSU RecName: Full=PBSX phage terminase large subunit gi|1225943|emb|CAA94059.1| PBSX terminase [Bacillus subtilis subsp. subtilis str. 168] gi|2633612|emb|CAB13115.1| PBSX defective prophage terminase (large subunit) [Bacillus subtilis subsp. subtilis str. 168] Length = 433 Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 35/304 (11%), Positives = 79/304 (25%), Gaps = 57/304 (18%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 ++ ++ H + + ++ + G G K+ A ++ + + + I Sbjct: 2 IVKEINPHFE-DYVFNWEQTYQFLV-GGYGSSKSYHTALKIVLKLLK-EKRTALVIREVF 58 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177 +++ +A + + L S L + + + Sbjct: 59 DTHRDSTFALFQEVIEELGLTKAVASLSSPL------------QLRFHNGSRIMFKGM-- 104 Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 + P H + ++ +E S K ++G I T+N + W Sbjct: 105 -DNPAKLKSVH--NISLIWIEECSEVKYEGFKELIGRLRHPELKLHMICTTNPVGTSNWT 161 Query: 238 YDIF--------------------NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277 Y F I D + + + + + D Sbjct: 162 YRHFFRDERKKRFVLDDSELYEKRTIVKGDTYYHHSTANDNLFLPESYVKQLDGLKEYDP 221 Query: 278 DVAR-----------IEILGQFPQQEVNNF------IPHNYIEEAMSREAIDDLYAPLIM 320 D+ R I +L QF + I M + A + + Sbjct: 222 DLYRIARKGRFGVNGIRVLPQFEVLPHDQVKKCIAAISKPIFRTGMDFGFEESYNAVVRL 281 Query: 321 GCDI 324 D Sbjct: 282 AVDP 285 >gi|187251258|ref|YP_001875740.1| phage terminase large subunit [Elusimicrobium minutum Pei191] gi|186971418|gb|ACC98403.1| Phage terminase, large subunit [Elusimicrobium minutum Pei191] Length = 397 Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 27/245 (11%), Positives = 70/245 (28%), Gaps = 30/245 (12%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 G GK+ A +++ G+++ + LK T V+ L Sbjct: 30 GGARSGKSHAVAQLLIMRALNLQGINVGITRKTMPALKMTAARLVTDLLKEYGLYSEKNH 89 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + + + + S+ D + ++ +EA+ Sbjct: 90 NKMEHYYNLGKSRIQFFSL-------------------DNPEKIKSAEFNYIWMEEATEF 130 Query: 204 PDIINKSILGFFTELNPNRF---WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 ++L + + +T N N W + + + Sbjct: 131 TYEDYVTLLTRLSAPIKEPYKNQIFLTLNPSDSNSWIAKKLLSAQN-TQIIKSSYKDNPF 189 Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIM 320 + + ++ +D + R+ LGQ+ + + + +++ +I Sbjct: 190 LSKDYINTLLGLKDIDENYYRVFALGQWGANKNIVYDNYTFVD-------EIKNTDNVIW 242 Query: 321 GCDIA 325 G D Sbjct: 243 GLDFG 247 >gi|146310689|ref|YP_001175763.1| hypothetical protein Ent638_1030 [Enterobacter sp. 638] gi|145317565|gb|ABP59712.1| hypothetical protein Ent638_1030 [Enterobacter sp. 638] Length = 402 Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 66/231 (28%), Gaps = 25/231 (10%) Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP-HNTHGMAV 195 + + Q + + L++ S + + + V Sbjct: 31 TAEYRQYQEIFDKLVEYLEPLIKSSSRSEKRILLKNGGKIDFWVTNDNKLAGRGREYDLV 90 Query: 196 FNDEASG------TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249 DEA+ +I KSI + T + + +FY I + Sbjct: 91 LIDEAAFTKSPEMLAEIWAKSIKPTLLTTKGRAYIFSTPDGVDEDNFFYAICRKKELGFF 150 Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309 + T + + E R + V R E L +F + + E + Sbjct: 151 EHYAPTSSNPFVPPEELEK--ERLSCEPRVFRQEFLAEFVDWSADALFDVSKWLE----D 204 Query: 310 AIDDLYAPLIMGC----DIAGEGG---DKTVVVF-----RRGNIIEHIFDW 348 + + M D A +GG D T VV+ R G I DW Sbjct: 205 GKPVEFPEMCMAVFAVMDTAVKGGIEHDGTAVVYYAIDTRPGRERLTILDW 255 >gi|92118001|ref|YP_577730.1| phage terminase [Nitrobacter hamburgensis X14] gi|91800895|gb|ABE63270.1| phage Terminase [Nitrobacter hamburgensis X14] Length = 545 Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 50/336 (14%), Positives = 95/336 (28%), Gaps = 63/336 (18%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS---TRPGM 108 RW + + H + T+F RG KT+L A + L PG Sbjct: 47 DRWMERVIRRIYGPRHPDGTRIVKTVFAMI---PRGNRKTSLGAALTLLHSIGPEKTPGG 103 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 ++C A + Q + + E + + + ID ++ Sbjct: 104 QVVCAAADQKQAR-IAFEEAVGIIRS-------------------HKTINRVVDIIDHRN 143 Query: 169 YTITCRTYS--EERPDTFVGPHNTHGMAVFNDEASGTP-DIINKSILGFFTELNPNRFWI 225 R+ S E H DE P + +++ + + I Sbjct: 144 RFRDQRSGSLVEAISADAKTQHGRTPSFTLMDEIHAWPKRDLWEALKTGLVKTAGSLNVI 203 Query: 226 MTSNTRRLNGWFYDIFNIPLE----------------------DWKRYQIDTRTVEGIDS 263 +T+ R ++ ++ + DW+ I R G+ Sbjct: 204 ITTAGRGQENIAFEQYSYARKVALGEIDDPATLPVIFEAPADCDWQDETIWHRVNPGLKH 263 Query: 264 GF--------HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDL 314 G+ D D + L + + F+ + +E Sbjct: 264 GYPDLDGLRQLAREGRERPGDRDSFKQLNLNIWSDSSSSPFVGMDIYDEGADPINLDALA 323 Query: 315 YAPLIMGCDIAGEGGDKTVV--VFRRGNIIEHIFDW 348 P +G D++ D TV+ +R G + W Sbjct: 324 GQPCWLGVDLS-SNTDLTVIVAAWRDGTGGYIVHPW 358 >gi|226363443|ref|YP_002781225.1| hypothetical protein ROP_40330 [Rhodococcus opacus B4] gi|226241932|dbj|BAH52280.1| hypothetical protein [Rhodococcus opacus B4] Length = 441 Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 34/297 (11%), Positives = 79/297 (26%), Gaps = 35/297 (11%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 WQ + + +S + F+ A+ R GK + L + +++ Sbjct: 4 DEWQQHVL----IQSLGRRKDSKWSSFEVALLVPRQNGKGAVIEARELAGLFLIGEQTLL 59 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A+ K + + + P + + + S+ + K Sbjct: 60 HSAHEFKTAKEAYLR-IKQLIEQTPELNDLT--------KQFRFSNEDVSVELHPKKGRS 110 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 G G DEA PD +++ + + + W +S Sbjct: 111 VGARLKFVARSKGSG-RGFSGDLNILDEAYELPDEALAALMPTMSARDNPQLWYTSSAPL 169 Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291 + + + +R + + L + I I +F + Sbjct: 170 PHSAVLRRVQERGRQGGRRLAYFEWSAPD---DADLDDHEAWRLANPGYGIRIDDEFIES 226 Query: 292 EVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDK---TVVVFRRGNIIEHI 345 E ++ E + D+ D V+ G+++ + Sbjct: 227 EREAMTDGDFARERLGI-------------ADVGR--RDAPIGAVLWKDCGDVMSTV 268 >gi|22536761|ref|NP_687612.1| hypothetical protein SAG0585 [Streptococcus agalactiae 2603V/R] gi|22533605|gb|AAM99484.1|AE014218_1 conserved hypothetical protein [Streptococcus agalactiae 2603V/R] Length = 471 Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 41/297 (13%), Positives = 80/297 (26%), Gaps = 44/297 (14%) Query: 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 WQ + + N+ + R GKT + + LW + G+ I+ Sbjct: 44 WQENMLIPMMAINEDNLWVHQKYGYAI----PRRNGKTEVVYILELWAL--HKGLKILHT 97 Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173 A+ + + + +V K+L M + + + + + Sbjct: 98 AHRISTSH-SSFEKVKKYLEMSGYVD--------------GEDFISNKAKGQERIEFKSS 142 Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR-- 231 + + R T G + DEA ++ T+ + IM Sbjct: 143 GSVIQFRTRTSNGGLGEGFDLLIIDEAQEYTAEQESALKYTVTDSDNPMT-IMCGTPPTM 201 Query: 232 -------------------RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISR 272 R +GW + I + Sbjct: 202 VSTGTVFESYRKECLKGDRRYSGWAEWSVDEMQPIHDVKSWYVANPSMGYHLNERKIEAE 261 Query: 273 YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329 G D I+ LG +P + I + E + +L + L +G +G Sbjct: 262 LGEDEIDHNIQRLGYWPSFNQKSVISEKEW-AKLKVEQVPELKSKLFVGIKFGQDGN 317 >gi|321315003|ref|YP_004207290.1| PBSX defective prophage terminase large subunit [Bacillus subtilis BSn5] gi|291483777|dbj|BAI84852.1| PBSX defective prophage terminase large subunit [Bacillus subtilis subsp. natto BEST195] gi|320021277|gb|ADV96263.1| PBSX defective prophage terminase (large subunit) [Bacillus subtilis BSn5] Length = 433 Score = 63.8 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 34/304 (11%), Positives = 78/304 (25%), Gaps = 57/304 (18%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 ++ ++ H + + ++ + G G K+ A ++ + + + I Sbjct: 2 IVKEINPHFE-DYVFNWEQTYQFLV-GGYGSSKSYHTALKIVLKLLK-EKRTALVIREVF 58 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177 +++ +A + + L S L + + + Sbjct: 59 DTHRDSTFALFQEVIEELGLTKAVASLSSPL------------QLRFHNGSRIMFKGM-- 104 Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 + P H + ++ +E S K ++G I T+N + W Sbjct: 105 -DNPAKLKSVH--NISLIWIEECSEVKYEGFKELIGRLRHPELKLHMICTTNPVGTSNWT 161 Query: 238 YDIF--------------------NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277 Y F I D + + + + + D Sbjct: 162 YRHFFRDERKKRFVLDDSELYEKRTIVKGDTYYHHSTANDNLFLPESYLKQLDGLKEYDP 221 Query: 278 DVARIEILGQFPQQEVNNF-----------------IPHNYIEEAMSREAIDDLYAPLIM 320 D+ RI G+F + I M + A + + Sbjct: 222 DLYRIARKGRFGVNGIRVLPQFEVLPHNQMKKCIAAISKPIFRTGMDFGFEESYNAVVRL 281 Query: 321 GCDI 324 D Sbjct: 282 AVDP 285 >gi|313891712|ref|ZP_07825317.1| putative phage terminase, large subunit [Dialister microaerophilus UPII 345-E] gi|313119706|gb|EFR42893.1| putative phage terminase, large subunit [Dialister microaerophilus UPII 345-E] Length = 574 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 46/295 (15%), Positives = 87/295 (29%), Gaps = 31/295 (10%) Query: 69 NVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLIST--RPGMSIICIANSETQLKNTLW 125 SN F+ A + GR GK+ A + + I C A Q K +W Sbjct: 85 RKKRSNEKRFREAYVQMGRQNGKSFFAAELCNDFATFSGYREGRIFCTATKMEQAK-IVW 143 Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185 EV+K++ + FE+ + + S +++ + + T S Sbjct: 144 QEVAKFIRA--DKDLFELYEIKEYNSTILSKITNTVIKAIGRDTTSADGFRSVLAIIDEY 201 Query: 186 GPHNTHGMAVFNDEASGTPDIINKSILGF----FTELNPNRFWI---MTSNTRRLNGWFY 238 HNT M + D + ++ + + + F Sbjct: 202 HAHNTDQMYQLMRKGQIKVDNALTVAITTAGFNLNSPCYQQYQFCKKIIEGVLKKDSLFI 261 Query: 239 DIFNIPLED--WKRYQID-------TRTVEGIDSGFHEGI-------ISRYGLDSDVARI 282 I + +D WK + ++ + + G D R Sbjct: 262 YIAEMDKDDDIWKPANWAKANPLILWKDDITLNKEMLARMAETAIDAREKGGKDLVDFRT 321 Query: 283 EILGQFPQQEVNNFIPHNYIEEA-MSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 + L + FI + ++ D +G D++ GGD T + Sbjct: 322 KHLNTWVTYTGGAFIDLAKWKLCETNKTIDDMKGKTAYLGIDLS-SGGDLTSIAL 375 >gi|251778259|ref|ZP_04821179.1| phage terminase, large subunit, pbsx family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082574|gb|EES48464.1| phage terminase, large subunit, pbsx family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 416 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 32/285 (11%), Positives = 76/285 (26%), Gaps = 27/285 (9%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 + + + + T F G G GK+ M+ + + I Sbjct: 5 ISKKMFNETYLPQLENYDTRFNV-YYGGAGSGKSVFVFQKMVLKYLKYENRTCLVIRKIN 63 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177 LK++ +A V LS ++ L ++ + + + Sbjct: 64 NTLKDSCFALVKSILSDWQLYDQCKINKTDL------------TIELPNGSLFLFKGL-- 109 Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 + P+ + + +E + D + P + N + W Sbjct: 110 -DDPERIKSING--IDDIIVEECTEIDDFTFDQLCLRLRSKKPYNQVHVMFNPVSKSNWV 166 Query: 238 YDIF--------NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 + + L + + R + + + + ++ + RI LG+F Sbjct: 167 FSRWFNPMNSNPRTDLNNTMVLKTTYRDNKFLPQDYIDNLLEMKATNRVYYRIYALGEFA 226 Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334 + E + ++ + D D T Sbjct: 227 TLSKLVYTNWEVKEFDYKQILKENYNRQAVFNLDFGYT-NDPTAF 270 >gi|118462814|ref|YP_880086.1| phage terminase, large subunit, putative [Mycobacterium avium 104] gi|118164101|gb|ABK64998.1| phage terminase, large subunit, putative [Mycobacterium avium 104] Length = 485 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 36/307 (11%), Positives = 74/307 (24%), Gaps = 56/307 (18%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ + + F+ + R GK + L + PG+SI+ Sbjct: 16 PWQELVVREGMATDDAGRW----LAFEVGVLVARQNGKNGGIEVVELGWMINEPGVSILH 71 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 A+ ++ L L H ++ G E + + T T Sbjct: 72 TAHEFQTAMESM-----DKLEALILSHPLLENEVAQIRRGNGRESIRLKNESIIRFRTRT 126 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232 + DEA +I+ T + W + S Sbjct: 127 KSG-----------GRGFSVDRLVIDEAMIWSPASQAAIMPLLTTAKNPQIWYLGSAADE 175 Query: 233 LNGWFYDIFNIPLED----------------------------WKRYQIDTRTVE----- 259 + + W+ + + Sbjct: 176 ETHEYCGKWASLRARALAGDDPKLLWLEWSAPEPPEDPAARRVWREDRANWAAANPSMDY 235 Query: 260 GIDSGFHEGIISRYGLDSDVARIEIL--GQFPQQEVNN-FIPHNYIEEAMSREAIDDLYA 316 + + E ++ + D +E L G++P+ + P + Sbjct: 236 LVTEEYIEDELAAFRRDLAKWEVERLSVGRWPKDITDVHIFPIEKWDALGDGSPDLVNIY 295 Query: 317 PLIMGCD 323 P ++ D Sbjct: 296 PQVIAVD 302 >gi|53802921|ref|YP_115325.1| prophage MuMc02, terminase, ATPase subunit [Methylococcus capsulatus str. Bath] gi|53756682|gb|AAU90973.1| putative prophage MuMc02, terminase, ATPase subunit [Methylococcus capsulatus str. Bath] Length = 443 Score = 63.4 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 37/275 (13%), Positives = 66/275 (24%), Gaps = 29/275 (10%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM----SIICIANSETQLKNTLWAEVS 129 + + FK + A R GKT ++ + ++ E Q + + V Sbjct: 16 DASRFKVGMFA-RQCGKTFTTTLELVMDCLQAEAQGGRRRWVILSRGERQAREAMEEGVK 74 Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189 + L L + P Sbjct: 75 RHLHAFQTGFKALEYDFEASVKALEVVLP--------------GGSRISALPANPDTARG 120 Query: 190 THGMAVFNDEASG--TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247 V DE + I +++ + + + S FYD+ Sbjct: 121 FTAS-VLLDEFAFHADSRKIWQALFPVVSRSDLKLR--VISTPNGKGNKFYDLITGDHPV 177 Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI---EE 304 W R+ D + D D E Q+ + ++ I E Sbjct: 178 WSRHVTDIYQAVADGLPRDIEELKAGVGDDDAWAQEYELQWLDEAS-AWLSFELINSVEH 236 Query: 305 AMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRG 339 + P +G DIA D V+ Sbjct: 237 DHAGIPEHYAGGPCFLGVDIAAR-NDLFVIWVLEA 270 >gi|238021116|ref|ZP_04601542.1| hypothetical protein GCWU000324_01014 [Kingella oralis ATCC 51147] gi|237868096|gb|EEP69102.1| hypothetical protein GCWU000324_01014 [Kingella oralis ATCC 51147] Length = 408 Score = 63.4 bits (152), Expect = 6e-08, Method: Composition-based stats. Identities = 25/246 (10%), Positives = 60/246 (24%), Gaps = 36/246 (14%) Query: 90 KTTLNA-WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148 K+ A +W + + +C + +K + +AE+ ++ W E+ Sbjct: 36 KSFNFAKMAAIWGLV--EPLRFLCTREFQNSIKESFYAELKAAIAS---EPWLEV----- 85 Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN-THGMAVFNDEASGTPDII 207 ++ + + + + + + +EA + Sbjct: 86 -----AYDVGVDYIRGRNGTEFLF-----KGLRNNIQSVKSLAKIDVCIVEEAEDISEAA 135 Query: 208 NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGIDSGFH 266 + + W++ N ++ N F P +++ Sbjct: 136 WEVLEPTIRAPKSE-IWVIW-NPKQENSATDRRFRKNPPPRSCIMEMNYGDNPFFPPELE 193 Query: 267 EGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325 E + D G + +Q A D A Sbjct: 194 ELRRHQQQTLDPARYAWIWEGAYYEQSEAQVF------RGKYEIAEFVPGEN----WDGA 243 Query: 326 GEGGDK 331 G D Sbjct: 244 YFGLDF 249 >gi|222147665|ref|YP_002548622.1| Phage terminase-like protein [Agrobacterium vitis S4] gi|221734653|gb|ACM35616.1| Phage terminase-like protein [Agrobacterium vitis S4] Length = 530 Score = 63.4 bits (152), Expect = 6e-08, Method: Composition-based stats. Identities = 38/318 (11%), Positives = 88/318 (27%), Gaps = 57/318 (17%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR---PGM 108 WQ + + H N + A+ RG KT+L A + L PG Sbjct: 43 DPWQERIVRRIYGPRHPNGRR---IVRTVAMLLPRGNRKTSLGAALALLHTIGPENLPGG 99 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 + A+ +Q + + + + +++ D++ Sbjct: 100 ECMVAASDRSQARIAYQEAYNIIGAEPRMDGRLHLTDSKNRIRNPKTGAFFEAISADART 159 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP-DIINKSILGFFTELNPNRFWIMT 227 H + DE P + ++I ++ + +++ Sbjct: 160 ------------------AHGHTPVFALVDELHAWPKRDLWEAIRSGLVKVAGSLLMVIS 201 Query: 228 SNTRRLNGWFYDIFNIPLE----------------------DWKRYQIDTRTVEG--IDS 263 + R ++ ++ + DW+ + + G Sbjct: 202 TAGRGQENVAWEFYDYARKVQRGEIIDESWLPILFETPRDADWQDETVWYASNPGLAFGY 261 Query: 264 GFHEGIISRYGL------DSDVARIEILGQFPQQEVNNFIPHNYIEE-AMSREAIDDLYA 316 G+ + + + L + ++ F+ +E A + D Sbjct: 262 PDIAGMRQLARESAEIPAEREAFKQLNLNIWLDHSLDPFVDMMVYDEGAYPVDLDDLEGK 321 Query: 317 PLIMGCDIAGEGGDKTVV 334 P +G D++ D T V Sbjct: 322 PCWLGVDLS-SNNDLTAV 338 >gi|262194298|ref|YP_003265507.1| hypothetical protein Hoch_1017 [Haliangium ochraceum DSM 14365] gi|262077645|gb|ACY13614.1| protein of unknown function DUF264 [Haliangium ochraceum DSM 14365] Length = 478 Score = 63.4 bits (152), Expect = 6e-08, Method: Composition-based stats. Identities = 34/342 (9%), Positives = 83/342 (24%), Gaps = 71/342 (20%) Query: 34 RFFPWGIKGKPLEHFSQP---HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90 WG + +P R+Q+ F+ + F+ ++ R +G Sbjct: 17 LANEWGFLAGLAKFDDEPVTLERYQMVFLRN-------------RSRFR-WVTKSRQVGF 62 Query: 91 TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150 + + A L R + + ++ + K + + LP + + Sbjct: 63 SFVFALEALARCHLRDKHTAVFVSYNLEDAKEKVL-IARQIHEELPLAYQKRL------- 114 Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG--TPDIIN 208 + + +S G V+ DE + + Sbjct: 115 ----VVDSKTELAFESNSSNKRLSRIISAPSKAPRGKKGD----VYLDELAHYVLDREVY 166 Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID---TRTVEGIDSGF 265 + S G F++I L + + D Sbjct: 167 TGSTALILRSHGQLSSC--STPLGRRGIFWEISTEELRKYPHHTRDEVPWWRCRFFCLDI 224 Query: 266 HEGIISRYGLDSDV---------------------ARIEILGQFPQQEVNNFIPHNYIEE 304 + + ++ + E F + ++ P+ I Sbjct: 225 DRAVREAPHMPTEERVAAFGTQAIVQQLDSLALEDFQQEFECSFVDESY-SYYPYELILP 283 Query: 305 AMSREA--------IDDLYAPLIMGCDIAGEGGDKTVVVFRR 338 S + + + ++ G D+ D + + Sbjct: 284 CTSEDLVLAGDFTDLPEPEGRIVAGFDVGRT-RDHSELAVFE 324 >gi|134288591|ref|YP_001110830.1| hypothetical protein SPSV3_gp30 [Salmonella phage SETP3] gi|125631956|gb|ABN47359.1| hypothetical protein [Salmonella phage SETP3] gi|126015316|gb|ABN70689.1| terminase [Salmonella phage SETP5] gi|126015318|gb|ABN70690.1| terminase [Salmonella phage SETP12] Length = 423 Score = 63.4 bits (152), Expect = 6e-08, Method: Composition-based stats. Identities = 39/283 (13%), Positives = 87/283 (30%), Gaps = 15/283 (5%) Query: 81 AISAGRGIGKTTLNAW-MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 A AG G GK+ + +L + I + ++ L + + LS R+ Sbjct: 23 AFVAGFGTGKSEVMCNSALLDSMEGGSDSLIAMYEPTYDLVRLILAPRMEEKLSDWGIRY 82 Query: 140 WFEMQSLSLH-PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + ++ SG + + + +++ ++ + DT H H Sbjct: 83 KYNKSDNIIYTSSGQFGDFVLRTLDNPARIVGYESFRAKIDELDTLNKDHAEHAWNKVIA 142 Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-DWKRYQIDTRT 257 P + I + T + +D + + ++ Q T + Sbjct: 143 RNRQLP-RTYRPITP------KPANTVSVFTTPEGFRFVHDRWVVKKNPGYEMIQAPTTS 195 Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317 + + + + Y + I G+F ++ + Y + S Sbjct: 196 NPFLPEDYVQSLRDTY--PGRLIDAYIDGEFVNLTSDSVY-YAYDQRKNSSRETIQPGET 252 Query: 318 LIMGCDIAGEGGDKTVVVFRRGNIIEHIFDW-SAKLIQETNQE 359 L +G D G + V +RG + + + E +E Sbjct: 253 LYIGQDF-NVGHMASTVYVQRGYVWHAVAELVDMLDTPEVVRE 294 >gi|190890121|ref|YP_001976663.1| hypothetical protein RHECIAT_CH0000492 [Rhizobium etli CIAT 652] gi|190695400|gb|ACE89485.1| hypothetical conserved protein [Rhizobium etli CIAT 652] Length = 465 Score = 63.0 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 33/300 (11%), Positives = 74/300 (24%), Gaps = 49/300 (16%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM---------SII 111 + + + GR GK+ A + ++L +++ Sbjct: 44 ELYQKHTGRTEAPTEAQREGWLVIGRRGGKSFTMALIAVFLACFFDYRQYLAPGERATVL 103 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 IA Q + L +++ + + + + ++ + Sbjct: 104 VIATDRRQARVIL-----RYVRAMLDNIPLLQAMVERDTADSFDLDNSTTIEVG------ 152 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI--------INKSILGFFTELNPNRF 223 +F AV DE + I +I + + Sbjct: 153 ---------TASFRSTRGYTYAAVLCDELAFWRTDDAAEPDYAILDAIRPGMASIPNSML 203 Query: 224 WIMTSNTRRLNGWFYD----IFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279 S+ G +D + I + + D Sbjct: 204 LCA-SSPHARRGALWDAFKRFWGKDDAPLVWRAATREMNPTISQSVVDRALE---RDHAS 259 Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSR---EAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 A E +F + ++ F+ +E+ +SR E D +G D + Sbjct: 260 AMAEYGAEF-RSDIEQFVNIEVVEDCVSRGVYERAPLPNIRYRAFVDPSGGSNDSMTLAI 318 >gi|18138498|ref|NP_542602.1| probable terminase [Halorubrum phage HF2] gi|32453919|ref|NP_861683.1| hypothetical protein HalHV1gp095 [Halovirus HF1] gi|18000439|gb|AAL55022.1| probable terminase [Halorubrum phage HF2] gi|32346487|gb|AAO61393.1| hypothetical protein [Halovirus HF1] Length = 563 Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 43/336 (12%), Positives = 85/336 (25%), Gaps = 73/336 (21%) Query: 51 PHRWQLEFMEA--VDVHCHSNVNNSNPTIFKCA------------ISAGRGIGKTTLNAW 96 P + + A ++ + P + I GR IG + + Sbjct: 27 PDLLAEDILRAKNLETDEIEPLTLFRPYQPRIMHAYFYGDAKILNIYKGRRIGVSYIIGI 86 Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156 +L +P ++ ++ Q + + +++ + + Sbjct: 87 CILIEALLKPDTFYPILSKTKGQSNSRI-SDIKTLIKNA-------------KIDIPLEK 132 Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-MAVFNDEASGTPDI--INKSILG 213 + + + + VF DE + D + L Sbjct: 133 DNQDEIVLPNGSRIKA-------YTGDPDSARGEDPPKTVFIDEMAFLEDQSATLDAYLP 185 Query: 214 FFTELNPNRFWIMT--------------SNTRRLNG--------WFYDIFNIPLEDWKRY 251 + + + T N + + D + Sbjct: 186 TISLGSSQMVQVSTPKAQNDEFMDANERGTPDGRNDFGILALKQPTFKNADEIQTDVSLF 245 Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311 + D ++ D + E L + P + F IE+AM R A Sbjct: 246 EQDVE--PVRGDFDLMAAETQRASDPNGFAQEYLCR-PVSDEYRFFSMPTIEDAMGRGAA 302 Query: 312 DDLY---------APLIMGCDIAGEGGDKTVVVFRR 338 DD L+MG DI G D T +V Sbjct: 303 DDYSYGLRRYDTPNTLVMGVDI-GFNSDDTAIVVFE 337 >gi|330718718|ref|ZP_08313318.1| PBSX family phage terminase large subunit [Leuconostoc fallax KCTC 3537] Length = 422 Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 35/252 (13%), Positives = 78/252 (30%), Gaps = 21/252 (8%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 GRG K++ A M++ ++ S + L++++ A++ ++ L ++ Sbjct: 38 GGRGSTKSSFIAVMLMLMLEEDSNASAAVLRRVADTLRDSVVAQLKWAINKLGLSANWKA 97 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS-G 202 + L Y G D + + H ++ +E S Sbjct: 98 TTSPLEIKNIYTGQKIIFRGADDPEKIKSVKVDKG------------HIKFIWFEELSEF 145 Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP--LEDWKRYQIDTRTVE- 259 ++I F + + W + +D ++ TV Sbjct: 146 KAAAGIRNIKQSLGRGGEQMFIFSFNPPKSQRNWTNEFVEQEKVRDDVLVHRSTYLTVPK 205 Query: 260 -GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318 + + F + ++ E LG+ F N I + + + + + + Sbjct: 206 TWLGNVFISEAKALKEVNPTAYEHEYLGKVVGTGAEVF--TNIINQRI-PDELAATFDTI 262 Query: 319 IMGCDIAGEGGD 330 G D G G D Sbjct: 263 YRGLDF-GFGAD 273 >gi|84687555|ref|ZP_01015431.1| hypothetical protein 1099457000249_RB2654_04994 [Maritimibacter alkaliphilus HTCC2654] gi|84664464|gb|EAQ10952.1| hypothetical protein RB2654_04994 [Rhodobacterales bacterium HTCC2654] Length = 260 Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 22/257 (8%), Positives = 64/257 (24%), Gaps = 39/257 (15%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 P WQ F+ R IGK+ A + PG + Sbjct: 29 PPDNWQRRFLTTASPF--------------VMALCSRRIGKSQTTAILAA-QTIGAPGRT 73 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ ++ + Q + + W +M + ++ + Sbjct: 74 VLVLSPTLGQSQLLFKRILEAWAAMSLPIEKTRLTQTTMELANGSVVACVP--------A 125 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 + + +E + D + + + + ++ + Sbjct: 126 GQDGSSARGYGVKDGG--------LLIYEEGAFLADAVYDATIPIREDGGR---ILLITT 174 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 + G+ + + ++ ++ + +E + + E ++ Sbjct: 175 PGNVGGFAHTAWTEN-DEIEKITARSTEIERMAEKVAFDRR---YMPPRQFATEHELRW- 229 Query: 290 QQEVNNFIPHNYIEEAM 306 + IE A Sbjct: 230 SSGGDPLFASETIENAF 246 >gi|168699883|ref|ZP_02732160.1| hypothetical protein GobsU_10183 [Gemmata obscuriglobus UQM 2246] Length = 205 Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 56/221 (25%), Gaps = 35/221 (15%) Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161 P + + Q L +V + L + S Sbjct: 4 ALLYPRADCLVFCPTMRQSMEML-RKVRDFYRALG-------------SPVAELADTKTS 49 Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221 + + + S+E F P V DE S D + KS+ Sbjct: 50 LELANGSRV-ISLPDSQEGVVGFSAPR-----LVVIDEGSRVSDELYKSVRPMLAVSKGQ 103 Query: 222 RFWIMTSNTRRLNGWFYDIFNIPLED----------WKRYQIDTRTVEGIDSGFHEGIIS 271 S GWF+DI++ E W+R + + I F E + Sbjct: 104 LL--TLSTPFGNQGWFFDIWDDSAEGLKRRSKLHEPWQRTAVPASQIPRITPEFLEDERA 161 Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 G + E +F + I A S Sbjct: 162 ELGE--RWFQQEYFLRFLDSI-DAVFSQAVIHGARSEGIEP 199 >gi|94994695|ref|YP_602793.1| phage terminase [Streptococcus pyogenes MGAS10750] gi|94548203|gb|ABF38249.1| phage terminase [Streptococcus pyogenes MGAS10750] Length = 476 Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 40/298 (13%), Positives = 77/298 (25%), Gaps = 44/298 (14%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ + + + + R GKT + + LW + G+ I+ Sbjct: 48 PWQENMLIPIMAVDEDGLWVHQKYGYAI----PRRNGKTEVVYIVELWAL--HKGLKILH 101 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 A+ + + +V K+L M + + + + Sbjct: 102 TAHRISTSH-ASFEKVKKYLEMSGYVD--------------GEDFISNKAKGQERIEFKA 146 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR- 231 + R T G + DEA ++ T+ + IM Sbjct: 147 SGAVIQFRTRTSNGGLGEGFDLLIIDEAQEYTSEQESALKYTVTDSDNPMT-IMCGTPPT 205 Query: 232 --------------------RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271 R +GW ++ I + Sbjct: 206 MVSTGTVFEAYRKDCLKGNKRYSGWAEWSVPEMVKINDVSSWYISNPSMGFHLNERKIEA 265 Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329 G D I+ LG +P + I + E + +L + L +G +G Sbjct: 266 ELGEDEIDHNIQRLGYWPSFNQKSVISEKEW-AKLKVEQVPELKSKLFVGIKFGQDGN 322 >gi|169633422|ref|YP_001707158.1| putative phage terminase [Acinetobacter baumannii SDF] gi|169152214|emb|CAP01118.1| conserved hypothetical protein; Putative phage terminase [Acinetobacter baumannii] Length = 432 Score = 63.0 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 36/287 (12%), Positives = 75/287 (26%), Gaps = 34/287 (11%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 P F+ + AG G GKT + + + P + + A + Q+++ + + Sbjct: 23 LPNKFRAFV-AGFGSGKTWVGCSSLCDKSWSFPKVPLGYFAPTYPQIRDIFFPTI----- 76 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 F+ E ++ + Y T S E+P+T Sbjct: 77 ---DEVAFDWG-----LKTKIYESNKEVDLYYGRQYRSTIICRSMEKPNT---IVGFKIG 125 Query: 194 AVFNDEASGTP----DIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW 248 DE + I+ + I + T + ++ F Sbjct: 126 HALIDELDVMTKVKAQQAWRKIIARMRYKQAGLLNGIDVATTPEGFKFTHEQFVKEANQS 185 Query: 249 KRYQ--------IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 + + + + Y + + GQF P + Sbjct: 186 DAKRALYGMIQASTYDNEANLPDDYIASLFESY--PPQLISAYLKGQFVNLTSGAVYP-D 242 Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347 + + L++G D VV R + + Sbjct: 243 FDRTLNHTDEEIRPNEALLIGMDFNVL-KMAAVVYVIRDGKPRALDE 288 >gi|320105341|ref|YP_004180931.1| hypothetical protein AciPR4_0096 [Terriglobus saanensis SP1PR4] gi|319923862|gb|ADV80937.1| hypothetical protein AciPR4_0096 [Terriglobus saanensis SP1PR4] Length = 484 Score = 62.7 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 38/316 (12%), Positives = 70/316 (22%), Gaps = 58/316 (18%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 + R +G +T A PG + +A++ + ++ V + LP Sbjct: 59 IVLKARQMGMSTWIAGQFFLKTIQTPGTMTVLVAHT-REATEQMFRIVQRMWENLPDDLR 117 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + M + + E+ + N H E Sbjct: 118 EGP--------AKRSRANVGQMAFPALDSEFRVVSAGEQNAGRSMSIQNLH-----CSEL 164 Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI-DTRTVE 259 S P ++ G L P ++ S G FY + Sbjct: 165 SRWPGDAASTLAGLKAALAPGGEMVLESTPNGAYGCFYQEWMEAEAQRMARHFLPWWMEP 224 Query: 260 GIDSGFHE-------------------GIISRYGLDSDVARIEILGQFPQQ-------EV 293 E I R +F + Sbjct: 225 TYLGARVEASDWTEEERALVSREGLRPEQIGYRRELQRTYRGMARQEFAEDAVSCFRASG 284 Query: 294 NNFIPHNYIEEAMSR---------------EAIDDLYAPLIMGCDIAGEG--GDKTVVVF 336 F + IE ++ ++ D AG G GD Sbjct: 285 ECFFELDAIEARLAELTPPLASRRSGSLLLWMPPVKGRRYLIASDPAGGGSEGDFAAAQV 344 Query: 337 RRGNIIEHIFDWSAKL 352 ++ + +L Sbjct: 345 VDIDLGLQCAELRQRL 360 >gi|208429857|ref|YP_002265410.1| large terminase [Clostridium phage 39-O] gi|190683340|gb|ACE81984.1| large terminase [Clostridium phage 39-O] Length = 425 Score = 62.7 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 39/272 (14%), Positives = 80/272 (29%), Gaps = 22/272 (8%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + GRG K++ + ++ LI + + LK +++ ++ ++ L +F Sbjct: 36 LKGGRGSTKSSFVSKVIPLLIMANNDCHAVIVRKVGQTLKGSVYNQMIWSINDLGLNGYF 95 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 ++ L + + I + + V+ +E Sbjct: 96 KVYKSPLK------------IVYTPTNQEIIFLGCDDPMKAKGITVPFGRIGIVWYEELD 143 Query: 202 GTP-DIINKSILGFFTELNPNRFWIMTSNTRR-LNGWFYDIFNIPLEDWKRYQIDTRTVE 259 +S+ F N + + T N + N W + I ED + TV Sbjct: 144 QFNGMEEIRSMTQSFIRKNGDNWVFYTFNPPKSKNNWVNEEQLIDREDRLIHHSTYLTVP 203 Query: 260 --GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317 + F + + + E LG+ N + I E + + Sbjct: 204 SDWLGQQFIIEAEHLKNVKEEAYKHEYLGE-VTGTGGNVFDNVIIRE--ITKEEINNMEE 260 Query: 318 LIMGCDIAGEGGDKTVVVFRR--GNIIEHIFD 347 G D G D N + I + Sbjct: 261 FEYGVDF-GFSIDPATWCKIHYKNNKLYIIDE 291 >gi|257885123|ref|ZP_05664776.1| terminase large subunit [Enterococcus faecium 1,231,501] gi|257820975|gb|EEV48109.1| terminase large subunit [Enterococcus faecium 1,231,501] Length = 432 Score = 62.7 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 30/273 (10%), Positives = 77/273 (28%), Gaps = 27/273 (9%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 I GRG GK++ A ++ + R ++ + I + L+ +++ ++ + Sbjct: 24 DILNIVCKGGRGSGKSSDIA-HIVTQLLMRYAVNAVGIRYVDNTLEQSIYEQMKWAIEKQ 82 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 F+ L + + + R + Sbjct: 83 GVSRLFKFNKSPLK------------ITYLPRGNYMIFRGAQNPERIKSLKDSKFPFAIG 130 Query: 196 FNDE-ASGTPDIINKSILGFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLED 247 + +E A + +I + + N R W + ++ Sbjct: 131 WIEELAEFKTEDEVTTITNSLLRGELDDGLFYKFFYSYNPPKRKQSWVNKKYETSFQPDN 190 Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN--YIEEA 305 + + I F + + + + A E G + + +P + +++ Sbjct: 191 TFIHHSTYQDNPFISKEFLKEVEATRERNPRRAEWEYDG---KAVGSGVVPFDNLQVKKG 247 Query: 306 MSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338 + + + + G D G D V Sbjct: 248 SISDEMVSNFDNIRNGLDF-GYATDPLAFVRWH 279 >gi|251782540|ref|YP_002996842.1| phage terminase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391169|dbj|BAH81628.1| phage terminase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 476 Score = 62.7 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 40/298 (13%), Positives = 77/298 (25%), Gaps = 44/298 (14%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ + + + + R GKT + + LW + G+ I+ Sbjct: 48 PWQENMLIPIMAVDEDGLWVHQKYGYAI----PRRNGKTEVVYIVELWAL--HKGLKILH 101 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 A+ + + +V K+L M + + + + Sbjct: 102 TAHRISTSH-ASFEKVKKYLEMSGYVD--------------GEDFISNKAKGQERIEFKA 146 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR- 231 + R T G + DEA ++ T+ + IM Sbjct: 147 SGAVIQFRTRTSNGGLGEGFDLLIIDEAQEYTSEQESALKYTVTDSDNPMT-IMCGTPPT 205 Query: 232 --------------------RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271 R +GW ++ I + Sbjct: 206 MVSTGTVFEAYRKDCLKGNKRYSGWAEWSVPEMVKINDVSSWYIANPSMGFHLNERKIEA 265 Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329 G D I+ LG +P + I + E + +L + L +G +G Sbjct: 266 ELGEDEIDHNIQRLGYWPSFNQKSVISEKEW-AKLKVEQVPELKSKLFVGIKFGQDGN 322 >gi|33601198|ref|NP_888758.1| putative phage terminase [Bordetella bronchiseptica RB50] gi|33602480|ref|NP_890040.1| putative phage terminase [Bordetella bronchiseptica RB50] gi|33575633|emb|CAE32711.1| putative phage terminase [Bordetella bronchiseptica RB50] gi|33576919|emb|CAE33999.1| putative phage terminase [Bordetella bronchiseptica RB50] Length = 425 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 33/263 (12%), Positives = 72/263 (27%), Gaps = 33/263 (12%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 P F+ + AG G GKT + + P ++ A + Q+++ + + + Sbjct: 14 LPHKFRAFV-AGFGSGKTWVGGAGLCRHAWEFPRVNSGYFAPTYGQIRDIFYPTIEEVAH 72 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + E ++ + Y T S E+P Sbjct: 73 DWG-------------LAAKINESNKEVHLFAGRKYRGTVICRSMEKPGD---IVGFKIG 116 Query: 194 AVFNDEASGTPDI----INKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW 248 DE + I+ + + T + Y F + + Sbjct: 117 KGLIDELDVMKTDKAALAWRKIIARLRHTAPGLINGVDVTTTPEGFKFVYQQFVKQVRER 176 Query: 249 K--------RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 + + + + + Y + + GQF + P N Sbjct: 177 PDLVALYGLVQASTYENGKNLPEDYIPSLRASY--PPQLIAAYLRGQFTNLTSGSVYP-N 233 Query: 301 YIEEAMSREAIDDLYAPLIMGCD 323 + +A ++ + L +G D Sbjct: 234 FDRRLHHTDAAEEPHEELHIGMD 256 >gi|297620908|ref|YP_003709045.1| hypothetical protein wcw_0671 [Waddlia chondrophila WSU 86-1044] gi|297376209|gb|ADI38039.1| conserved hypothetical protein [Waddlia chondrophila WSU 86-1044] Length = 499 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 40/331 (12%), Positives = 77/331 (23%), Gaps = 79/331 (23%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 I R +G +T + L IA++ L+ V LP Sbjct: 55 ILKARQLGISTFIGLLFLDRCLFNSNQHAGIIAHTREDA-EILFRRVKFAYDHLPP---- 109 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + + + + + + T H E Sbjct: 110 -----EIKSLRRANTDNARELQLSNGSTLRVGTSMR---SSTLQYLH--------ISEFG 153 Query: 202 GT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE----------- 246 P+ + I G + P ++ + S G+FY++ Sbjct: 154 KICAKYPEKAREIITGSLNAIAPGQYIFIESTAEGREGYFYEMCKEAQAAQDSGKKLTSL 213 Query: 247 -------DWKRYQIDTRTVEGIDSGFHEGI----------ISRYGLDSDVA--RIEILGQ 287 W +Q + ++ H S R E G+ Sbjct: 214 DFRFHFFPWHGHQAYKIDSQTLELPSHMQRYFSRLEGILGRSLSPEQKAWYIKRSETQGE 273 Query: 288 -------------FPQQEVNNFIPHNYIEEAMS---REAIDDLYAPLIMGCDIAGEGGDK 331 F + +E R D P+ D+ D Sbjct: 274 DMKREFPSTPEEAFEVSNEGLYYGRQIVEARQHGRIRNVYYDANVPVHTAWDLGY--NDS 331 Query: 332 TVVVFRRG-NIIEHIFDWSAKLIQETNQEGC 361 T + + + H+ ++ E + E Sbjct: 332 TAIWWYQVCGQEIHLLEY-----YENSGEPL 357 >gi|314938435|ref|ZP_07845725.1| phage terminase, large subunit, PBSX family [Enterococcus faecium TX0133a04] gi|314940850|ref|ZP_07847760.1| phage terminase, large subunit, PBSX family [Enterococcus faecium TX0133C] gi|314953782|ref|ZP_07856647.1| phage terminase, large subunit, PBSX family [Enterococcus faecium TX0133A] gi|314994570|ref|ZP_07859832.1| phage terminase, large subunit, PBSX family [Enterococcus faecium TX0133B] gi|314997239|ref|ZP_07862219.1| phage terminase, large subunit, PBSX family [Enterococcus faecium TX0133a01] gi|313588686|gb|EFR67531.1| phage terminase, large subunit, PBSX family [Enterococcus faecium TX0133a01] gi|313591038|gb|EFR69883.1| phage terminase, large subunit, PBSX family [Enterococcus faecium TX0133B] gi|313594222|gb|EFR73067.1| phage terminase, large subunit, PBSX family [Enterococcus faecium TX0133A] gi|313600298|gb|EFR79141.1| phage terminase, large subunit, PBSX family [Enterococcus faecium TX0133C] gi|313642244|gb|EFS06824.1| phage terminase, large subunit, PBSX family [Enterococcus faecium TX0133a04] Length = 434 Score = 62.7 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 32/275 (11%), Positives = 78/275 (28%), Gaps = 27/275 (9%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 N I GRG GK++ A ++ + R ++ + I + L+ +++ ++ + Sbjct: 24 NQDILNIVCKGGRGSGKSSDIA-HIVTQLLMRYAVNAVGIRYVDNTLEQSIYEQMKWAIE 82 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 F+ L + + + R + Sbjct: 83 KQGVSRLFKFNKSPLK------------ITYLPRGNYMIFRGAQNPERIKSLKDSKFPFA 130 Query: 194 AVFNDE-ASGTPDIINKSILGFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPL 245 + +E A + +I + + N R W + Sbjct: 131 IGWIEELAEFKTEDEVTTITNSLLRGELDDGLFYKFFYSYNPPKRKQSWVNKKYETSFQP 190 Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN--YIE 303 ++ + R I F + + + + A E G + + +P + ++ Sbjct: 191 DNTFIHHSTYRDNPFISKEFLKEVEATRASNPRRAEWEYDG---KAVGSGVVPFDNLQVK 247 Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338 + + + + + G D G D V Sbjct: 248 KGSITDEMISNFDNIRNGLD-YGYATDPLAFVRWH 281 >gi|190893406|ref|YP_001979948.1| hypothetical protein RHECIAT_CH0003832 [Rhizobium etli CIAT 652] gi|190698685|gb|ACE92770.1| hypothetical protein RHECIAT_CH0003832 [Rhizobium etli CIAT 652] Length = 443 Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 52/307 (16%), Positives = 80/307 (26%), Gaps = 47/307 (15%) Query: 60 EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN---AWMML------WLISTRPGMSI 110 A+ + + AGR GKT A + ++T +I Sbjct: 10 RAIYHQFTGRPHEPGFIPAEFFAVAGRRSGKTRAAGTLAGYVATLVDHSAYLATSERATI 69 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 +A S Q + A + S L + S ++ Sbjct: 70 PVMAASTVQAQKAFQACMVLEESSLLSKQIESSNSETIKLK------------------- 110 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-------PDIINKSILGFFTELNPNRF 223 R E RP DE + I ++ N Sbjct: 111 --TRCDIEVRPANHRTIRGITSPLAIADEVAFYFTDGQNTDSQILDAVRPSLQSGNHAGP 168 Query: 224 WIMTSNTRRLNGWFYDIF---NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280 + S+ G YD F + P D ++E + I Y + VA Sbjct: 169 LVCISSPYAKRGELYDAFKNHHGPNGDAHVIVAKGASLEFNSTIDPATIARAYKRNPTVA 228 Query: 281 RIEILGQFPQQEVNNFIPHNYIEEAMS---REAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336 E G F + +V N +E A E D AG G D + Sbjct: 229 DAEYGGNF-RSDVTNLFTLEAVEAATDLGVTERAPREGVQYFAHADPAGGSGADGFTLAI 287 Query: 337 --RRGNI 341 R N+ Sbjct: 288 GHRENNV 294 >gi|49823279|gb|AAT68704.1| hypothetical protein [Borrelia hermsii] Length = 397 Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 39/266 (14%), Positives = 82/266 (30%), Gaps = 40/266 (15%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 + RGIG+T A + L T G + + + + ++ E+ + L R F + Sbjct: 26 SSRGIGQTYDIATVYLERKFTPGGGDTLAVRKKKNKTVQSIHKEILELLHRYNLRREFTV 85 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + +++ K + E DT H ++ +EA+ Sbjct: 86 SKAKI---------ETKNLIYGRKRAFVF-----EGGHDTTDLKSYAHFKDLWLEEANQF 131 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW--KRYQIDTRTVEGI 261 + + ++ E + SN + W Y + ++ + R + Sbjct: 132 TESDIERLIPTMRERGGRIYMS--SNPVPRSHWLYKRYIANEDNPAVCVIKSTYRDNPFL 189 Query: 262 D----SGFHEGIISRYGLDSDVARIEILG-QFPQQEVNNFIPHNYIEEAMSREAIDDLYA 316 + + E Y + RIE+LG +F + + + + Sbjct: 190 NGGDVDSWLEKQRLAYHGNDIGFRIEVLGEEFDFGTAKVYQNFDVCDSDLISRVQ----- 244 Query: 317 PLIMGCDIAGEGGDKTVVVFRRGNII 342 G T + R GN + Sbjct: 245 -----------GSFYTGIHIR-GNRV 258 >gi|206563738|ref|YP_002234501.1| putative phage terminase large subunit [Burkholderia cenocepacia J2315] gi|198039778|emb|CAR55749.1| putative phage terminase large subunit [Burkholderia cenocepacia J2315] Length = 436 Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 35/274 (12%), Positives = 68/274 (24%), Gaps = 54/274 (19%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 + GR GK+ + ++ + G + A L Sbjct: 26 VVRCGRRYGKSYILRYLAGDALL--KGQLVGVYAPQFATL-------------------- 63 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 G ++ S +T ++ + + DE Sbjct: 64 ---TKTYNEIYGDIEPVVTGSNKGHLIESKVTGGGIDFWSLESGLFGRGREYDLLLFDET 120 Query: 201 SGTPDIINKSILGFFT---ELNPNRFWIMTSNT--RRLNGWFYDIFNIP----------- 244 + T D + + P S L+ +FY + Sbjct: 121 AFTKDGTLEIYRDAISPVVATRPGFRMFSFSTPLVMDLSNFFYALHEHKDYKWNPKIGAD 180 Query: 245 -LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303 E +K + + +D + G + R EI G+F + P Sbjct: 181 NYERFKVHHRPSWCNPLVDDKWLRG--EYRKRSALSWRQEIEGEFVDWSGISLFP----- 233 Query: 304 EAMSREAIDDL-YAPLIMGCDIAGEGG---DKTV 333 +++ Y + D A + G D T Sbjct: 234 -NLNKPVDPHPRYDAVFAVIDTAMKSGIEHDGTA 266 >gi|308449036|ref|XP_003087834.1| hypothetical protein CRE_16583 [Caenorhabditis remanei] gi|308252534|gb|EFO96486.1| hypothetical protein CRE_16583 [Caenorhabditis remanei] Length = 411 Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 37/271 (13%), Positives = 70/271 (25%), Gaps = 22/271 (8%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 WQ A+ I IS R +GKT ++ L P +++I Sbjct: 47 DEWQAGLGRAMLA--KRASGLYAAGIGGIIISICRQVGKTFTIGSIIFALCIIFPKLTVI 104 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A+ T + + + + + ++ H +Q + + + Sbjct: 105 WTAHHSRTSNETFES----------LQGFAQKRKVAPHIRQIRRVNGQQQITFKNGSRIM 154 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 S V DEA + + ++ T + N I+ Sbjct: 155 FGARESGFGRG------FAGVDVVVADEAQILGNKALEDMVPA-TNASKNPLIILMGTPP 207 Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291 R + F + + E +S + ++ P Sbjct: 208 RPVDP-GEAFRTRRNEAIELKKLAAAGEDTESDMLYVELGADPDADLDDWDQVAKANPSY 266 Query: 292 EVNNFIPHNYIEEAMSREAIDDLYAPLIMGC 322 P I A DD Y +G Sbjct: 267 PHRT--PREAILRNRKNLADDDSYRREGLGI 295 >gi|281491541|ref|YP_003353521.1| phage terminase [Lactococcus lactis subsp. lactis KF147] gi|281375259|gb|ADA64772.1| Phage protein, terminase [Lactococcus lactis subsp. lactis KF147] Length = 469 Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 43/325 (13%), Positives = 80/325 (24%), Gaps = 52/325 (16%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ ++ V + + R GKT + + LW + G+SI+ Sbjct: 41 PWQKNLLKEVMAIDEDGLWTHQKFGYSI----PRRNGKTEIVYILELWSLEQ--GLSILH 94 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 A+ + + + ++ K+L + + +S+ + Sbjct: 95 TAHRISTSH-SSYEKLKKYLEDSGYVEGEDFKSIKAKGQ------ERLELIESGGVIQFR 147 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232 RT S + DEA ++ T+ + IM Sbjct: 148 TRTSSGGL--------GEGFDILVIDEAQEYTTEQESALKYTVTDSDNPMT-IMCGTPPT 198 Query: 233 L---------------------NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271 +GW + I + Sbjct: 199 PISSGTVFTNYRDNTLAGKAKYSGWAEWSVEDVKDIHDVEAWYNSNPSMGYHLNERKIEA 258 Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDK 331 G D ++ LG +P+ + I L +G G D Sbjct: 259 ELGEDKLDHNVQRLGYWPKYNQKSVISEQEWNVLKVNRLPVIKGK-LFVGI---KYGNDG 314 Query: 332 TVVVFRRGNIIEHIFDWSAKLIQET 356 V + S K+ ET Sbjct: 315 ANVAM-----SIAVKTLSGKVFVET 334 >gi|239502405|ref|ZP_04661715.1| putative phage terminase [Acinetobacter baumannii AB900] Length = 427 Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 39/287 (13%), Positives = 77/287 (26%), Gaps = 34/287 (11%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 P F+ + AG G GKT + + + P + + A + Q+++ + + Sbjct: 18 LPNKFRAFV-AGFGSGKTWVGCSSLCDKSWSFPKVPLGYFAPTYPQIRDIFFPTI----- 71 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 F+ E ++ + Y T S E+P+T Sbjct: 72 ---DEVAFDWG-----LKTKIYESNKEVDLYYGRQYRSTIICRSMEKPNT---IVGFKIG 120 Query: 194 AVFNDEASGTP----DIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW 248 DE + I+ + I + T + ++ F Sbjct: 121 HALIDELDVMTKVKAQQAWRKIIARMRYKQAGLLNGIDVATTPEGFKFTHEQFVKEANLS 180 Query: 249 KR-------YQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 Q T E + + + Y + + GQF P + Sbjct: 181 DAKRALYGMIQASTYDNEVNLPDDYIASLFESY--PPQLISAYLKGQFVNLTSGAVYP-D 237 Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347 + + L++G D VV R + + Sbjct: 238 FDRTLNHTDEEIRPNEALLIGMDFNVL-KMAAVVYVIRDGKPRALDE 283 >gi|168704532|ref|ZP_02736809.1| hypothetical protein GobsU_33659 [Gemmata obscuriglobus UQM 2246] Length = 209 Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 59/226 (26%), Gaps = 40/226 (17%) Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156 +LW P + + Q L +V + L Sbjct: 4 ALLW-----PKADCLVFCPTMRQSMEML-RKVRDFYRALG-------------SPVAELA 44 Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT 216 + S+ + + S+E F P V DE S D + KS+ Sbjct: 45 DTKTSLELANGSRV-ISLPDSQEGVVGFSAPR-----LVVIDEGSRVSDELYKSVRPMLA 98 Query: 217 ELNPNRFWIMTSNTRRLNGWFYDIFNIPLED----------WKRYQIDTRTVEGIDSGFH 266 S GWF+DI++ E W+R + + I F Sbjct: 99 VSKGQLL--TLSTPFGNQGWFFDIWDDSAEGLKRRAKLHEPWQRTAVPASQIPRITPEFL 156 Query: 267 EGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 E + G + E +F + I A S Sbjct: 157 EDERAELGE--RWFQQEYFLRFLDSI-DAVFSQAVIHGARSEGIEP 199 >gi|227549612|ref|ZP_03979661.1| gp2, terminase [Corynebacterium lipophiloflavum DSM 44291] gi|227078304|gb|EEI16267.1| gp2, terminase [Corynebacterium lipophiloflavum DSM 44291] Length = 540 Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 45/321 (14%), Positives = 82/321 (25%), Gaps = 50/321 (15%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ + +H + N + + R GKT L + LW I ++ Sbjct: 42 PWQKWVL----IHGLELLPNGEFRFKRVIVEVARQNGKTLLMVILGLWRIFQFGASRVLS 97 Query: 113 IANSETQLKNTL--------WAEVSKWLSMLPHRHWFEMQSL----SLHPSGWYAELLEQ 160 A S ++TL W V ++ LP E + + +E Sbjct: 98 AAQSLGDAEDTLDEAFALAAWNPVLRYF--LPDNPRAEEEDDEYNGAYRSRANGKAAMEL 155 Query: 161 SMGIDSKHYTITCR-TYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTEL 218 ++ + + + + G + DE +I+ Sbjct: 156 AIAPRPEVLDLAGKMPIWSLAVTSRKGGRSKSVDLALLDELREHLDWDAWNAIVPTSRNR 215 Query: 219 NPNRFW-----------------------IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255 ++ W I T F+ P D Sbjct: 216 PRSQVWGFSNAGDLRSVVFRSLRESALKQIDDGTTAATQTAFFSYSAHPDADVLDPAAHA 275 Query: 256 RTVEGIDSGFH-------EGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR 308 + + E + G + R E L Q+ I E Sbjct: 276 QANPSMGYSNLTADSIMAEAKDAIAGDNEPGFRAECLCQWQDVLTPGKISLKLWESLTDT 335 Query: 309 EAIDDLYAPLIMGCDIAGEGG 329 + A + +G D+A +G Sbjct: 336 TSARAPGAEVFVGIDVALDGR 356 >gi|15675368|ref|NP_269542.1| hypothetical protein SPy_1460 [Streptococcus pyogenes M1 GAS] gi|13622552|gb|AAK34263.1| conserved hypothetical protein - phage associated [Streptococcus pyogenes M1 GAS] Length = 471 Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 40/298 (13%), Positives = 79/298 (26%), Gaps = 44/298 (14%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ+ + + + + + R GKT + + LW + G+ I+ Sbjct: 43 PWQVNMLIPIMAIDENGLWVHQKYGYAI----PRRNGKTEVVYIVQLWAL--HKGLKILH 96 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 A+ + + +V K+L M + + + + Sbjct: 97 TAHRISTSH-ASFEKVKKYLEMSGYVD--------------GEDFISNKAKGQERIEFKA 141 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR- 231 + R T G + DEA ++ T+ + IM Sbjct: 142 SGAVIQFRTRTSNGGLGEGFDLLIIDEAQEYTSEQESALKYTVTDSDNPMT-IMCGTPPT 200 Query: 232 --------------------RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271 R +GW ++ I + Sbjct: 201 MVSTGTVFEAYRKDCLKGNKRYSGWAEWSVPEMVKINDVSSWYISNPSMGFHLNERKIEA 260 Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329 G D I+ LG +P + I + E + +L + L +G +G Sbjct: 261 ELGEDEIDHNIQRLGYWPSFNQKSVISEKEW-AKLKVEQVPELKSKLFVGIKFGQDGN 317 >gi|308186468|ref|YP_003930599.1| PBSX phage terminase large subunit [Pantoea vagans C9-1] gi|308056978|gb|ADO09150.1| PBSX phage terminase large subunit [Pantoea vagans C9-1] Length = 267 Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 60/235 (25%), Gaps = 22/235 (9%) Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161 + R I+C L+ + EV + + +P + + + Sbjct: 1 MMNRESGVILCAREFMNSLEESSMQEVKQAILSVP------------WLASNFDIGDKYI 48 Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221 ID + +S R + + + DEA +I + + E Sbjct: 49 RTIDKTVTYV----FSGLRHNLDSIKSKARILLCWVDEAESVSEIAWQKLSPTVREEGSE 104 Query: 222 RFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL-DSDV 279 W+ N R F +D +++ + D Sbjct: 105 -IWVTW-NPERDGSATDKRFRKEAGDDCITVEMNYTDNPWFPDVLEGERQNDERRLDPAT 162 Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334 G + + + Y A + + L G D G D + Sbjct: 163 YAWVWEGAYLENSDKQVLAGKY-RVAEFSDNLWKEAERLFFGADF-GFAKDPNTL 215 >gi|225017299|ref|ZP_03706491.1| hypothetical protein CLOSTMETH_01225 [Clostridium methylpentosum DSM 5476] gi|224949916|gb|EEG31125.1| hypothetical protein CLOSTMETH_01225 [Clostridium methylpentosum DSM 5476] Length = 424 Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 32/248 (12%), Positives = 61/248 (24%), Gaps = 24/248 (9%) Query: 87 GIGKTTLNA-WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 GKT+ + +LW + G + L+ + A + L L + ++ Sbjct: 37 RSGKTSCMSLSFVLWAFTRFDGEVFGLCGKTILSLRRNVVAPLLPVLRSLGYSCEEKISG 96 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 L + + + V DE + P Sbjct: 97 NYLDLRLRGKRNR--------------FYLFGGKDEGSAALIQGVTLAGVLCDEVALMPR 142 Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265 + + + ++ N WFY + E+ + R + Sbjct: 143 SFVEQAIARCSVAGSKLWFNC--NPEHPFHWFYLEWIQKAEEKNALHLHFRMEDNPSLSP 200 Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD-- 323 +LG + Q P + RE D + + CD Sbjct: 201 ALRRRYETLYSGAFYERFVLGHWTAQS-GQVYPMFDPARHVVREL-PDRFDSYYISCDYG 258 Query: 324 ---IAGEG 328 A G Sbjct: 259 ITNPASFG 266 >gi|169827506|ref|YP_001697664.1| DNA packaging protein Gp17 [Lysinibacillus sphaericus C3-41] gi|168991994|gb|ACA39534.1| DNA packaging protein Gp17 (Terminase) [Lysinibacillus sphaericus C3-41] Length = 529 Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 60/235 (25%), Gaps = 20/235 (8%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 ++ N F I R G +T LW T+P +I+ ++ Sbjct: 36 EINEAQQEIENLMLENRF-VVIGKARQAGISTFVLARALWRALTKPNENILIVSYKGDSA 94 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 K E K ++ R F H + + S Sbjct: 95 KALF--EKLKQMNDAVPRDKFP------HVFPNVRRDNRSELLFTNGSRI------SSVT 140 Query: 181 PDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 + V E + + S+ + ++ I T + + FY Sbjct: 141 AGNKDIGRGSTYTYVHLSEFAFYASQETQLLSVEQSLAKGAESQLTIET-TSNGTSNHFY 199 Query: 239 DIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293 ++ L+ + + + + + Y + G+ + Sbjct: 200 RLYMQALK--NKSKYVPYFIPFYHKLYKKQFAHDYDEAERWYKATNGGKRLVSDD 252 >gi|296392503|ref|YP_003657387.1| terminase [Segniliparus rotundus DSM 44985] gi|296179650|gb|ADG96556.1| Terminase [Segniliparus rotundus DSM 44985] Length = 471 Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 36/346 (10%), Positives = 79/346 (22%), Gaps = 54/346 (15%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 WQ + + + +S R +GKT + + L R G++ Sbjct: 35 GFDEWQDGLGRLMFSKREDGLYACDT----VVVSIPRQVGKTHVMMSALFALCLLRAGLT 90 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ A+ K T + + A+++ D Sbjct: 91 VLWTAHRVKTAKETFGSMAALAARDSV--------------RPLVAQVVRG--RGDEAVL 134 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 + + G + DEA + +L M Sbjct: 135 FVNGSRILFGAREAGFGRGFADVGVLAFDEAQILGESALDDMLASQNVAENPLTLFM-GT 193 Query: 230 TRRLNGWFYDIFNIPL------------------------EDWKRYQIDTRTVEGIDSGF 265 R + + + + Sbjct: 194 PPRPKDPGEAFTMFRQEALDGESEGTLYVELSADRGCDVEDREQWRKANPSYPHRTSERA 253 Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325 + DS R E LG + + + + + + A+ + + P + D++ Sbjct: 254 MLRLRKNLLEDS--FRREALGVWDEVSTHQAVVKDSVWRALRADGPESSVRPHALVVDMS 311 Query: 326 GEGGDKTVVVFRRGNIIEHIFDWSAKL-------IQETNQEGCPVG 364 + G+ W+ + PVG Sbjct: 312 HSREVSVGACWLDGDCAHVEEVWAGVSGSECVEWVAANVGRRVPVG 357 >gi|291484314|dbj|BAI85389.1| hypothetical protein BSNT_02825 [Bacillus subtilis subsp. natto BEST195] Length = 577 Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 44/336 (13%), Positives = 94/336 (27%), Gaps = 60/336 (17%) Query: 43 KPLEHFSQPHR---WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99 P +P + +Q + + N K IS R GK+ L A + L Sbjct: 65 LPDISTGKPTKLALFQKFIVYMLYAW--RNKETGFRRFTKAYISMARKGGKSVLVAGLSL 122 Query: 100 WLISTRP----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 + + I ANS Q K + +S L + + F + + Sbjct: 123 YELIYGEAPKFDRQIYATANSRGQAKTV-FKMISMQLKKIRSKSKFMRKWTKI------- 174 Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 ++ + I + + D+ + + DE + +L Sbjct: 175 --IQNEIRYLKDDCVIMPLSRDTDNLDSL------NVLIGILDEYHTASNTKMMEVLESS 226 Query: 216 TELNPNRFWIMTSNT-----------------------RRLNGWFYDIFNIPLEDWKRYQ 252 ++ S + +F ++ E+ + Sbjct: 227 QGQQDQGLILIISTAGFKLNGPMYSQEYPYVDDILSGRKENENYFAIVYEQDDEEEIYDE 286 Query: 253 IDT------RTVEGIDSGFHEGIISRYGL-----DSDVARIEILGQFPQQEVNNFIPHNY 301 VEG+ + + + D + ++ + +FI N Sbjct: 287 STWIKSNPLLEVEGLQKKILKNLRKKLKEALDKDDLNGTLVKNFNIWQSASSESFINGND 346 Query: 302 IEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFR 337 ++ A D P+ +G D++ D + + F Sbjct: 347 WKKRGVDVAPDITGKPVYIGIDLSRT-DDLSALGFI 381 >gi|118475162|ref|YP_891824.1| hypothetical protein CFF8240_0649 [Campylobacter fetus subsp. fetus 82-40] gi|261886523|ref|ZP_06010562.1| hypothetical protein CfetvA_16765 [Campylobacter fetus subsp. venerealis str. Azul-94] gi|118414388|gb|ABK82808.1| hypothetical protein CFF8240_0649 [Campylobacter fetus subsp. fetus 82-40] Length = 523 Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 41/343 (11%), Positives = 99/343 (28%), Gaps = 45/343 (13%) Query: 4 LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63 +S + + Q + + + +N V + K +P+ + P E + + Sbjct: 62 ELSKNDQTPQGVVMLSELVSALAKLENGVKKVKSIKDKSRPIINMDSPTA--NELKKRIL 119 Query: 64 VHCH----SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119 H + + F+ + R IG + +++ L + ++ SE Q Sbjct: 120 EHGNLYAYQKEFLQSNDTFRI-VLKSRQIGFSYVSSADALIGAVAGRDQ--LFLSASEEQ 176 Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 + + W E + Y + Sbjct: 177 ALILM-----------------------RYMRHWAKEYGISFKKDSEHEVVLENGAYIKS 213 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 + F G ++ DE + P+ I + + + S F Sbjct: 214 FANNFRTVQGFAGD-IWMDEFAWYPNPKRIWHAFVPSI--GAIKGRLTILSTPFEERSLF 270 Query: 238 YDIFNIPLED--WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN 295 + I++ + +KR+ + F + D+D QF + ++ Sbjct: 271 HQIYSDKTKFHMFKRFCVSIYKAIEDGLDFDLETMRDLF-DTDTWASAYECQFVD-DESS 328 Query: 296 FIPHNYIEEAMSREAI---DDLYAPLIMGCDIAGEGGDKTVVV 335 + + I+ + +A + G D+ D++ + Sbjct: 329 LLSISLIKSCVDNKAHYFTPKSSECIYAGYDVGRV-SDRSTLA 370 >gi|296330713|ref|ZP_06873190.1| PBSX defective prophage terminase (large subunit) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673970|ref|YP_003865642.1| phage terminase large subunit; PBSZ phage [Bacillus subtilis subsp. spizizenii str. W23] gi|296152177|gb|EFG93049.1| PBSX defective prophage terminase (large subunit) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412214|gb|ADM37333.1| phage terminase (large subunit); PBSZ phage [Bacillus subtilis subsp. spizizenii str. W23] Length = 433 Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 34/304 (11%), Positives = 78/304 (25%), Gaps = 57/304 (18%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 ++ ++ H + + ++ + G G K+ A ++ + + + I Sbjct: 2 IVKEINPHFE-DYVFNWEQTYQFLV-GGYGSSKSYHTALKIVLKLLK-EKRTALVIREVF 58 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177 +++ +A + + L S L + + + Sbjct: 59 DTHRDSTFALFQEVIEELGLTKAVASLSSPL------------QLRFQNGSRIMFKGM-- 104 Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 + P H + ++ +E S K ++G I T+N + W Sbjct: 105 -DNPAKLKSVH--NISLIWIEECSEVKYEGFKELIGRLRHPELKLHMICTTNPVGTSNWT 161 Query: 238 YDIF--------------------NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277 Y F I D + + + + + D Sbjct: 162 YRHFFRDERKKRFVLDDRELYEKRTIVKGDTYYHHSTANDNLFLPKSYVKQLDGLKVYDP 221 Query: 278 DVARIEILGQFPQQEVNNF-----------------IPHNYIEEAMSREAIDDLYAPLIM 320 D+ RI G+F + I M + A + + Sbjct: 222 DLYRIARKGRFGVNGIRVLPQFEVLPHGQVKERIAAISKPIFRTGMDFGFEESYNAVVRL 281 Query: 321 GCDI 324 D Sbjct: 282 AVDP 285 >gi|296101689|ref|YP_003611835.1| hypothetical protein ECL_01325 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|296103539|ref|YP_003613685.1| hypothetical protein ECL_03201 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056148|gb|ADF60886.1| hypothetical protein ECL_01325 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057998|gb|ADF62736.1| hypothetical protein ECL_03201 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 365 Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 59/237 (24%), Gaps = 22/237 (9%) Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161 + ++C L+ + EV + + +P + + + Sbjct: 1 MMNGESGVVLCAREFMNSLEESSMQEVKQAILSVP------------WLASNFDIGEKYI 48 Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221 ID + C R + + + DEA +I + + E Sbjct: 49 RTIDKSVNYVFC----GLRHNLDSIKSKARILLCWVDEAESVSEIAWQKLSPTVREEGSE 104 Query: 222 RFWIMTSNTRRLNGWFYDIFN-IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL-DSDV 279 W+ N R F +D +++ + D Sbjct: 105 -IWVTW-NPERDGSATDKRFRKEAGDDCITVEMNYTDNPWFPDVLEGERQNDQRRLDPAT 162 Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 G + + + Y A + + L G D G D +V Sbjct: 163 YAWVWEGAYLENSDKQVLAGKY-RIAEFSDQLWKEADRLFFGADF-GFAKDPNTLVR 217 >gi|50914563|ref|YP_060535.1| Phage terminase [Streptococcus pyogenes MGAS10394] gi|50903637|gb|AAT87352.1| Phage terminase [Streptococcus pyogenes MGAS10394] Length = 476 Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 40/298 (13%), Positives = 79/298 (26%), Gaps = 44/298 (14%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ+ + + + + + R GKT + + LW + G+ I+ Sbjct: 48 PWQVNMLIPIMAIDENGLWVHQKYGYAI----PRRNGKTEVVYIVELWAL--HKGLKILH 101 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 A+ + + +V K+L M + + + + Sbjct: 102 TAHRISTSH-ASFEKVKKYLEMSGYVD--------------GEDFISNKAKGQERIEFKA 146 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR- 231 + R T G + DEA ++ T+ + IM Sbjct: 147 SGAVIQFRTRTSNGGLGEGFDLLIIDEAQEYTSEQESALKYTVTDSDNPMT-IMCGTPPT 205 Query: 232 --------------------RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271 R +GW ++ I + Sbjct: 206 MVSTGTVFEAYRKDCLKGNKRYSGWAEWSVPEMVKINDVSSWYISNPSMGFHLNERKIEA 265 Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329 G D I+ LG +P + I + E + +L + L +G +G Sbjct: 266 ELGEDEIDHNIQRLGYWPSFNQKSVISEKEW-AKLKVEQVPELKSKLFVGIKFGQDGN 322 >gi|71911002|ref|YP_282552.1| phage terminase [Streptococcus pyogenes MGAS5005] gi|71853784|gb|AAZ51807.1| phage terminase [Streptococcus pyogenes MGAS5005] Length = 471 Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 40/298 (13%), Positives = 79/298 (26%), Gaps = 44/298 (14%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ+ + + + + + R GKT + + LW + G+ I+ Sbjct: 43 PWQVNMLIPIMAIDENGLWVHQKYGYAI----PRRNGKTEVVYIVELWAL--HKGLKILH 96 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 A+ + + +V K+L M + + + + Sbjct: 97 TAHRISTSH-ASFEKVKKYLEMSGYVD--------------GEDFISNKAKGQERIEFKA 141 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR- 231 + R T G + DEA ++ T+ + IM Sbjct: 142 SGAVIQFRTRTSNGGLGEGFDLLIIDEAQEYTSEQESALKYTVTDSDNPMT-IMCGTPPT 200 Query: 232 --------------------RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271 R +GW ++ I + Sbjct: 201 MVSTGTVFEAYRKDCLKGNKRYSGWAEWSVPEMVKINDVSSWYISNPSMGFHLNERKIEA 260 Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329 G D I+ LG +P + I + E + +L + L +G +G Sbjct: 261 ELGEDEIDHNIQRLGYWPSFNQKSVISEKEW-AKLKVEQVPELKSKLFVGIKFGQDGN 317 >gi|19746414|ref|NP_607550.1| hypothetical protein spyM18_1474 [Streptococcus pyogenes MGAS8232] gi|19748615|gb|AAL98049.1| conserved hypothetical phage protein [Streptococcus pyogenes MGAS8232] Length = 471 Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 40/298 (13%), Positives = 79/298 (26%), Gaps = 44/298 (14%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ+ + + + + + R GKT + + LW + G+ I+ Sbjct: 43 PWQVNMLIPIMAIDENGLWVHQKYGYAI----PRRNGKTEVVYIVELWAL--HKGLKILH 96 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 A+ + + +V K+L M + + + + Sbjct: 97 TAHRISTSH-ASFEKVKKYLEMSGYVD--------------GEDFISNKAKGQERIEFKA 141 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR- 231 + R T G + DEA ++ T+ + IM Sbjct: 142 SGAVIQFRTRTSNGGLGEGFDLLIIDEAQEYTSEQESALKYTVTDSDNPMT-IMCGTPPT 200 Query: 232 --------------------RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271 R +GW ++ I + Sbjct: 201 MVSTGTVFEAYRKDCLKGNKRYSGWAEWSVPEMVKINDVSSWYISNPSMGFHLNERKIEA 260 Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329 G D I+ LG +P + I + E + +L + L +G +G Sbjct: 261 ELGEDEIDHNIQRLGYWPSFNQKSVISEKEW-AKLKVEQVPELKSKLFVGIKFGQDGN 317 >gi|21910651|ref|NP_664919.1| putative terminase - phage associated [Streptococcus pyogenes MGAS315] gi|28876285|ref|NP_795519.1| putative terminase [Streptococcus pyogenes phage 315.3] gi|28895661|ref|NP_802011.1| hypothetical protein SPs0749 [Streptococcus pyogenes SSI-1] gi|21904853|gb|AAM79722.1| putative terminase - phage-associated [Streptococcus pyogenes MGAS315] gi|28810910|dbj|BAC63844.1| conserved hypothetical protein (phage associated) [Streptococcus pyogenes SSI-1] Length = 471 Score = 61.9 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 40/298 (13%), Positives = 79/298 (26%), Gaps = 44/298 (14%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ+ + + + + + R GKT + + LW + G+ I+ Sbjct: 43 PWQVNMLIPIMAIDENGLWVHQKYGYAI----PRRNGKTEVVYIVELWAL--HKGLKILH 96 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 A+ + + +V K+L M + + + + Sbjct: 97 TAHRISTSH-ASFEKVKKYLEMSGYVD--------------GEDFISNKAKGQERIEFKA 141 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR- 231 + R T G + DEA ++ T+ + IM Sbjct: 142 SGAVIQFRTRTSNGGLGEGFDLLIIDEAQEYTSEQESALKYTVTDSDNPMT-IMCGTPPT 200 Query: 232 --------------------RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271 R +GW ++ I + Sbjct: 201 MVSTGTVFEAYRKDCLKGNKRYSGWAEWSVPEMVKINDVSSWYISNPSMGFHLNERKIEA 260 Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329 G D I+ LG +P + I + E + +L + L +G +G Sbjct: 261 ELGEDEIDHNIQRLGYWPSFNQKSVISEKEW-AKLKVEQVPELKSKLFVGIKFGQDGN 317 >gi|307308946|ref|ZP_07588629.1| hypothetical protein SinmeBDRAFT_4513 [Sinorhizobium meliloti BL225C] gi|306900580|gb|EFN31193.1| hypothetical protein SinmeBDRAFT_4513 [Sinorhizobium meliloti BL225C] Length = 408 Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 65/199 (32%), Gaps = 22/199 (11%) Query: 89 GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH--RHWFEMQSL 146 GKT + A + W + + + SE+ +KN +W+ + + + + F++ + Sbjct: 209 GKTYVAAIAVWWSLVCFDDVKVTIFGPSESLIKNGMWSNLQALHARMASSFKDLFDVSAT 268 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + S + R S + G H + VF D+A G ++ Sbjct: 269 RV------------SRKTAAPSCFAEYRLVSADNASAARGIHAVN-NFVFVDDADGVSEV 315 Query: 207 INKSILGFFTELNPNRF----WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262 + ++ + NP + ++FN L + D Sbjct: 316 VIAYLMNIMIDPNPKLCLLSTMFANETPKLETVTEAELFNEALSSLRAMVSGEV---RTD 372 Query: 263 SGFHEGIISRYGLDSDVAR 281 + E I + +AR Sbjct: 373 PVWLEAIRYQLENAEYLAR 391 >gi|253999341|ref|YP_003051404.1| hypothetical protein Msip34_1632 [Methylovorus sp. SIP3-4] gi|253986020|gb|ACT50877.1| protein of unknown function DUF264 [Methylovorus sp. SIP3-4] Length = 428 Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 32/290 (11%), Positives = 82/290 (28%), Gaps = 34/290 (11%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 P +K A+ +G G GK+ + P + A + Q+++ + + + Sbjct: 15 MPQKYK-AMVSGFGTGKSWGGCADLCKHAWEFPRIHSGYFAPTFGQIRDIFYPTIEEV-- 71 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 F+ ++ + Y T S + P Sbjct: 72 ------AFDWG-----MRSKVNSSNKEVHLFAGRVYRGTIICRSMDDPS---QIVGFKIG 117 Query: 194 AVFNDE----ASGTPDIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW 248 DE A + + I+ +++ + + + T + YD F + + Sbjct: 118 KALIDELDILAKEKAQLAWRKIIARMRYKVDNLQNGVGVTTTPEGFKFVYDQFVKQVREK 177 Query: 249 K--------RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 + + + + + + Y + + G+F + N Sbjct: 178 PELASLYGLIHASTYDNAKNLPEDYIPSLRASY--PPQLIEAYLRGKFVNLNSGSVYA-N 234 Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350 + + +A+ L +G D + R + + + + Sbjct: 235 FDRKKNHTDAVMKPGEALHIGMDFNVM-NMTATINVMRDGLPLQVAELTG 283 >gi|171779706|ref|ZP_02920662.1| hypothetical protein STRINF_01543 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281808|gb|EDT47242.1| hypothetical protein STRINF_01543 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 470 Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 38/301 (12%), Positives = 80/301 (26%), Gaps = 47/301 (15%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ +++V + + R GKT + + LW + G++I+ Sbjct: 42 PWQQNLLKSVMGIEEDGLWTHQKFGYSI----PRRNGKTEIIYMLELWGLYH--GLNILH 95 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 A+ + + + +V ++L + + Sbjct: 96 TAHRISTSH-SSFEKVKRYLEKMGLED--------------GKSFNSIRAKGQERIELYE 140 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232 + R T G + DEA ++ T+ + IM Sbjct: 141 TGGVVQYRTRTSNGGLGEGFDLLVIDEAQEYTTEQESALKYTVTDSDNPMT-IMCGTPPT 199 Query: 233 LNGW--------------------FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE-GIIS 271 + + ++ + + +E I + Sbjct: 200 PVSSGTVFTKYRETCLFGRGKYLGWAEWSVSEEKEIDDIDAWYNSNPSMGFHLNERKIEA 259 Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDK 331 G D ++ LG +P + I A+ + + L L +G G D Sbjct: 260 ELGEDKLDHNVQRLGYWPTYNQKSAISETEWN-ALKIDDLPQLQGQLFVGI---KYGQDG 315 Query: 332 T 332 T Sbjct: 316 T 316 >gi|157168375|ref|YP_001456732.1| gp2, terminase [Corynebacterium phage BFK20] gi|74268807|emb|CAB93907.2| gp2, terminase [Corynebacterium phage BFK20] Length = 542 Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 47/372 (12%), Positives = 89/372 (23%), Gaps = 52/372 (13%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 M R E + + + F + F I G L WQ F Sbjct: 1 MERDGKLYGDTEPRIFTPPLAELTRENSLGFEVIDFAREILGIEL------RPWQEWFF- 53 Query: 61 AVDVHCHSNVNNSNPTIFK-CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119 + N F+ + GR GKT + + LW + G S I A + Sbjct: 54 -IHALELDPEKNYEDFRFRQLVLLVGRQNGKTLVMVILGLWKLFI-DGCSEIVTAAQDLS 111 Query: 120 LKNTLWAEVSKWLSMLPH-RHWFEMQSLSLHPSGWYAEL---LEQSMGIDSKHYTITCRT 175 + + P W + + + + + Sbjct: 112 VAEATLSNAFMLAKANPDLNQWLPWRMERGEMVPFMRTANGSNQIELAYAPVPEALDVFG 171 Query: 176 YSEE---RPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTEL------------- 218 + G + DE D +I E Sbjct: 172 AMPKWFVVATNRGGGRSHSAELAMLDELREHTDFQSWGAITPAVAERPRNQVYGFSNAGD 231 Query: 219 ------NPNRFWIMTSNTRRLNGWFY---DIFNIPLEDWKRYQIDT-RTVEGIDSGFHEG 268 R + + + ++ P E + + G + Sbjct: 232 EKSVVLRKQRNICLKEISDGITDQSQLAIFEWSAPEECSIFDRDGWAAANPSLGYGNRDE 291 Query: 269 II-----------SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317 D ++ RIE L Q+ + + + + ++ D AP Sbjct: 292 KTMLSLARAALDPEDDEADENLFRIEYLCQWVKTLEQGKVKRDTWDALKDSDSRRDEDAP 351 Query: 318 LIMGCDIAGEGG 329 + + D+ +G Sbjct: 352 IEVAVDVDVDGR 363 >gi|326385269|ref|ZP_08206932.1| putative phage terminase protein [Gordonia neofelifaecis NRRL B-59395] gi|326196012|gb|EGD53223.1| putative phage terminase protein [Gordonia neofelifaecis NRRL B-59395] Length = 439 Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 55/201 (27%), Gaps = 30/201 (14%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST-RPGMSII 111 WQ+ + + S ++ R GKT L A +ML + G + Sbjct: 11 PWQILAADLIGECDASGRLIHPL----VVVTVPRQSGKTALLAAVMLHRLIMLGEGGRVW 66 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A + + + +W + L++ G + Sbjct: 67 YTAQTGIKAREQMWEMMDAI------------------DRSALGPLIKSKRGAGDTSMEL 108 Query: 172 TCRTYSEE-RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF-----TELNPNRFWI 225 + P T H DEA + ++G T N I Sbjct: 109 LGTGARAKMHPPTPDSLHGNQSDLNVIDEAWFFDEPQAHGLMGAITPTQSTRPNAQTIII 168 Query: 226 MTSNTRRLNGWFYDIFNIPLE 246 T+ T WF+D+ + Sbjct: 169 STAGTAESV-WFHDLVARGHD 188 >gi|254240379|ref|ZP_04933701.1| hypothetical protein PA2G_01026 [Pseudomonas aeruginosa 2192] gi|126193757|gb|EAZ57820.1| hypothetical protein PA2G_01026 [Pseudomonas aeruginosa 2192] Length = 433 Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 32/277 (11%), Positives = 74/277 (26%), Gaps = 33/277 (11%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 AG G GKT + + P ++ A + Q+++ + + + Sbjct: 28 AGFGSGKTWVGCSGLAQHAWEWPRINAGYFAPTYAQIRDIFYPTMEEVA----------- 76 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 G + + + + + T + DE Sbjct: 77 -----FDWGLRTRINQANHEVHLFSGSAYRTTIICRSMEKPQTIVGFKVGRSLVDELDVL 131 Query: 204 P----DIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIF-------NIPLEDWKRY 251 + I+ +++ R + + T + + F + + Sbjct: 132 SLVKAQQAWRKIIARMRYKVDGLRNRVDVTTTPEGFKFVFQQFVKQLREKPHLQDLYGLV 191 Query: 252 QIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310 Q T E + + + ++ Y + + GQF Y + Sbjct: 192 QASTYDNEANLPDDYIDSLMESY--PPQLIAAYLRGQFVNLTSGTIYT-AYDRTLNASPE 248 Query: 311 IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347 P+ +G D G VV +R + + + Sbjct: 249 TVQPGEPIYVGMDF-NVGKMAAVVHVKRLGLPHAVDE 284 >gi|212715964|ref|ZP_03324092.1| hypothetical protein BIFCAT_00876 [Bifidobacterium catenulatum DSM 16992] gi|212661331|gb|EEB21906.1| hypothetical protein BIFCAT_00876 [Bifidobacterium catenulatum DSM 16992] Length = 477 Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 32/293 (10%), Positives = 65/293 (22%), Gaps = 48/293 (16%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 WQ F+ + +S+ R IGKT + L + R Sbjct: 37 HFDLWQKGFLYLL--FGKRADGKYACGSGGAVLSSCRQIGKTFTVGNAIFILCAGRANTL 94 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 +I A+ T + L+ + +Q + + Sbjct: 95 VIWTAHHTRTSDETFADMCDMTHNP----------KLARYVENVRRANGQQEIRFTNGSR 144 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 + + G DEA +++ M N Sbjct: 145 IMFGA------RENGFGRGLHSADIEVFDEAQILTVKALDNLIPIVNTSPNPLVVFM-GN 197 Query: 230 TRRLNGWFYDIFNIPLE-------------------------DWKRYQIDTRTVEGIDSG 264 + + F + + + + Sbjct: 198 PPKPGDQS-EAFGEKRDLALGGDAEGMLYVELAADRDADSDDREAWAKANPSYPKRTSEQ 256 Query: 265 FHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317 + + DS R E LG + + I +++ + D P Sbjct: 257 AIMRMRNLLAEDS--FRREALGIWDEHVAVRAIDPKLWKQS-ETMQVPDGGIP 306 >gi|187939660|gb|ACD38803.1| phage terminase large subunit [Pseudomonas aeruginosa] gi|187939739|gb|ACD38880.1| hypothetical phage protein [Pseudomonas aeruginosa] Length = 431 Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 32/277 (11%), Positives = 77/277 (27%), Gaps = 33/277 (11%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 AG G GKT + + P ++ A + Q+++ + + + Sbjct: 23 AGFGSGKTWVGCSGLAQHAWEWPRINAGYFAPTYAQIRDIFYPTMEEVA----------- 71 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 G ++ + + + + T + DE Sbjct: 72 -----FDWGLRTKINQANHEVHLYSGSAYRTTIICRSMEKPQTIVGFKVGRSLVDELDVL 126 Query: 204 P----DIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIF-------NIPLEDWKRY 251 + I+ +++ R + + T + + F + + Sbjct: 127 SLIKAQQAWRKIIARMRYKVDGLRNRVDVTTTPEGFKFVFQQFVKQLREKPHLQDLYGLV 186 Query: 252 QIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310 Q T E + + + ++ Y + + GQF Y + + + Sbjct: 187 QASTYDNEANLPDDYIDSLMDSY--PPQLIAAYLRGQFVNLTSGTIYT-AYDRKLNASQE 243 Query: 311 IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347 P+ +G D G VV +R + + + Sbjct: 244 TVQPGEPIYVGMDF-NVGKMAAVVHVKRLGLPHAVDE 279 >gi|160915221|ref|ZP_02077434.1| hypothetical protein EUBDOL_01229 [Eubacterium dolichum DSM 3991] gi|158433020|gb|EDP11309.1| hypothetical protein EUBDOL_01229 [Eubacterium dolichum DSM 3991] Length = 444 Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 33/256 (12%), Positives = 72/256 (28%), Gaps = 27/256 (10%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH-RH 139 +++GR K++ A M +LI + + + + +L+ T++ E + + L + Sbjct: 31 ILTSGRAGTKSSAMAIMADFLIVSEDDSAAVIMRKHHNKLRKTVYQECVRAIGRLGLSKK 90 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 F + + + TI + H V DE Sbjct: 91 HFTITRSPM------------QITYKKNGNTIYFTGSDSIDDTKGMIDEKNHIRLVVLDE 138 Query: 200 ASGT------PDIINKSILGFFTELNPNRFWIMTSNTRR----LNGWFYDIFNIPLEDWK 249 + D I + F + + + N + + + Sbjct: 139 LTEFFDKGEGEDEILNIVATFVRGNDEDFRMMYLYNPPKNPKAPVNEWCRKMEQRADCIH 198 Query: 250 RYQIDTRTVE--GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307 D R V + + + D + R LG+ + E + Sbjct: 199 -IHTDYRDVPMKWLGRKLIDEAEAMKLADFKMYRWIWLGE-AVGLDDLIYYMFDEEHHVR 256 Query: 308 REAIDDLYAPLIMGCD 323 + +D +G D Sbjct: 257 KTNSEDNITLYGVGVD 272 >gi|290513013|ref|ZP_06552377.1| hypothetical protein HMPREF0485_04781 [Klebsiella sp. 1_1_55] gi|289774626|gb|EFD82630.1| hypothetical protein HMPREF0485_04781 [Klebsiella sp. 1_1_55] Length = 435 Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 85/301 (28%), Gaps = 34/301 (11%) Query: 61 AVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119 A+ + K A AG G GKT + + P ++ A + Q Sbjct: 2 AIAPTLNVPQARFLAMQQKFKAYVAGFGSGKTWVGCGGICKGFWEFPKINQGYFAPTYPQ 61 Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 +++ + V + E ++ + Y T S E Sbjct: 62 IRDIFYPTVEEVAHDWG-------------LKVKIVESNKEVHFYSGRQYRGTTICRSME 108 Query: 180 RPDTFVGPHNTHGMAVFNDEA----SGTPDIINKSILGFFT-ELNPNRFWIMTSNTRRLN 234 +PDT DE + + I+ +++ R I + T Sbjct: 109 KPDT---IVGFKIGNALVDELDVLKADKARQAWRKIIARMRYKVDGLRNGIDVTTTPEGF 165 Query: 235 GWFYDIFNIP-------LEDWKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILG 286 + Y+ F + Q T E + + +++ Y ++ + + G Sbjct: 166 KFVYNQFVKAVREKPELRSMYGLVQASTFDNEKNLPDDYIPSLLASY--PPELIKAYLNG 223 Query: 287 QFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346 QF + + + L +G D G +V R + + Sbjct: 224 QFTNLTSGTIYHQ-FDRVLNNSSEEEQPGEALYIGMDF-NVGKMAGIVHVLRLGLPHAVT 281 Query: 347 D 347 + Sbjct: 282 E 282 >gi|166031465|ref|ZP_02234294.1| hypothetical protein DORFOR_01162 [Dorea formicigenerans ATCC 27755] gi|166028870|gb|EDR47627.1| hypothetical protein DORFOR_01162 [Dorea formicigenerans ATCC 27755] Length = 670 Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 30/245 (12%), Positives = 66/245 (26%), Gaps = 19/245 (7%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 GRG K++ + ++ LI M + + ++ +++ +V + L F+ Sbjct: 290 PGGRGSTKSSFVSLNIIDLIMKNSEMHAVVMRQVADTMRGSIYQQVKWAIDALGLSEEFD 349 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 L + S I R + + + ++ +E Sbjct: 350 ATVSPL------------EITRKSTGQKIYFRGADDPGKVKSIKVPFGYIGILWLEELDQ 397 Query: 203 TP-DIINKSILGFFTELNPNRFWIMTSNTRRL-NGWFYDIFNIPLEDWKRYQIDTRTVE- 259 + I + T N + + W IP + + Sbjct: 398 FTGPESVRKIEQSVIRGGDVAYIFKTFNPPKSASNWANKYIKIPKATRLVTESTYLDIPQ 457 Query: 260 -GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318 + F + + D E LG P + + I + + + Sbjct: 458 KWLGKPFIDEAQFLKETNPDAYENEYLGV-PNGSGGSVFDNLVIRA--ITDEEIAQFDNI 514 Query: 319 IMGCD 323 G D Sbjct: 515 KNGVD 519 >gi|281417138|ref|ZP_06248158.1| conserved hypothetical protein [Clostridium thermocellum JW20] gi|281408540|gb|EFB38798.1| conserved hypothetical protein [Clostridium thermocellum JW20] Length = 526 Score = 61.1 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 35/252 (13%), Positives = 74/252 (29%), Gaps = 37/252 (14%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 N + I R IG +TL ++L+ +++ +A++E L+ + Sbjct: 47 DNMDRYNI-ILKPRQIGFSTLLLGLILYYCFQFENYNVLLLAHTEDTT-QYLFTRLKLMY 104 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 +P ++ + + E + +++ RT S + Sbjct: 105 ESIPDKY-----------RIGFRKNNEMELFLENNSRIAV-RTASASKGQGIG--RGYSL 150 Query: 193 MAVFNDEASGTPDIINKSILGFFTEL--NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250 + E + + I IL I +T + FYD+F Sbjct: 151 NLIHLSEFAYYDEKIQDVILSSIENSLVKNENSRIFIESTAKGLNHFYDLFK------DS 204 Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310 ++R + F E + +Y QF + + I+ E Sbjct: 205 MAGNSRYKPFFYNWFCESMKKQY-------------QFEYELAKQWYKKGIIKHLTDDEM 251 Query: 311 IDDLYAPLIMGC 322 + +G Sbjct: 252 DETEKKLYALGA 263 >gi|317499861|ref|ZP_07958099.1| pbsx family Phage terminase [Lachnospiraceae bacterium 8_1_57FAA] gi|316898763|gb|EFV20796.1| pbsx family Phage terminase [Lachnospiraceae bacterium 8_1_57FAA] Length = 428 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 28/253 (11%), Positives = 64/253 (25%), Gaps = 39/253 (15%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + G G K+ A ++ + + + ++++ + + + + + Sbjct: 27 LVGGYGSSKSYHVAVKLIKKLLE-EKRKALVVREVFDTIRDSCYDLLQEVAEAMGVDGYL 85 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 S + + + I V+ +E S Sbjct: 86 TFTSSPM------------QVKFSNGSRIIFKGMDKPA-----KLKSLNGVSIVWIEECS 128 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE--------------- 246 K ILG + I+++N W Y F + Sbjct: 129 EVKYAGFKEILGRLRHPTLSNHIILSTNPVSKGNWCYKYFFQDKKKKVFVLDDEKLYKER 188 Query: 247 -----DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301 + + + + E + D D+ R+ G+F + P Sbjct: 189 TVVVGNTYYHHSTVDDNFFVPKEYVEQLDDLQTHDPDLYRVARQGRF-GVNGSLVFPQFV 247 Query: 302 IEEAMSREAIDDL 314 +E A E Sbjct: 248 VEPANQVEKEIKA 260 >gi|33594269|ref|NP_881913.1| putative phage terminase [Bordetella pertussis Tohama I] gi|33564344|emb|CAE43647.1| putative phage terminase [Bordetella pertussis Tohama I] gi|332383682|gb|AEE68529.1| putative phage terminase [Bordetella pertussis CS] Length = 425 Score = 60.7 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 28/259 (10%), Positives = 65/259 (25%), Gaps = 25/259 (9%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 P F+ + AG G GKT + + P ++ A + Q+++ + + + Sbjct: 14 LPHKFRAFV-AGFGSGKTWVGGAGLCRHAWEFPRVNSGYFAPTYGQIRDIFYPTIEEVAH 72 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + +H K I + D Sbjct: 73 DWGLAAKINESNKEVHLFAGRKYRGTVICRSMEKPGDIVGFKIGKGLIDELDVMKADKAA 132 Query: 194 AVFNDEASGTPDIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK--- 249 + I+ + + T + Y F + + Sbjct: 133 LA------------WRKIIARLRHTAPGLLNGVDVTTTPEGFKFVYQQFVKQVRERPELA 180 Query: 250 -----RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE 304 + + + + + Y + + GQF + N+ Sbjct: 181 ALYGLVQASTYENGKNLPEDYIPSLRASY--PPQLIAAYLRGQFTNLTSGSVYA-NFDRR 237 Query: 305 AMSREAIDDLYAPLIMGCD 323 +A ++ + L +G D Sbjct: 238 LHHTDAAEEPHEELHIGMD 256 >gi|308172469|ref|YP_003919174.1| phage terminase, large subunit, pbsx family [Bacillus amyloliquefaciens DSM 7] gi|307605333|emb|CBI41704.1| phage terminase, large subunit, pbsx family [Bacillus amyloliquefaciens DSM 7] Length = 424 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 32/270 (11%), Positives = 80/270 (29%), Gaps = 27/270 (10%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + GRG K+T ++ + P + + + L +++ ++ + + +L Sbjct: 29 RYVLKGGRGSSKSTHIGTRIVNDMMKYPVST-LVVRKVANTLGESVFEQLKEAIDLLGVG 87 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 ++ + + + + +I R + + ++ + Sbjct: 88 EYWHVNKSPMRLT------------YKPRGNSIIFRGADDPAKIKSLKIAKFPVAFLWVE 135 Query: 199 EAS------GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP--LEDWKR 250 E + I N + + F+ + +R W + ++ Sbjct: 136 ELAEFKLEEEISMIENSVLRAELPDGLFYAFYYSYNPPKRKQSWVNKKYESSFVPKNTYI 195 Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN--YIEEAMSR 308 + I F E + R E LG+ + +P + IE Sbjct: 196 HHSTYLENPYISKAFKEEAEIVKERNPLKYRWEYLGE---ALGSGVVPFDNLKIENGCIT 252 Query: 309 EAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338 + + + + G D G G D V Sbjct: 253 DEMVRSFDNIRQGVDF-GYGPDPLAYVRWH 281 >gi|227534164|ref|ZP_03964213.1| large subunit terminase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188204|gb|EEI68271.1| large subunit terminase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 432 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 33/257 (12%), Positives = 72/257 (28%), Gaps = 14/257 (5%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 RG K+ A ++ I P ++ I + K++ ++ + + + L Sbjct: 28 LTYKGSRGSRKSFSVAEDVIMQIILHPYVNWIVLRQYAYTNKDSTYSTIQQAANRLGVYE 87 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 F+ L + G+D + + + + D Sbjct: 88 LFKFTLSPLEITFKPTGQKVFFRGMDKPLAVTSLQPTTGVLARAWWE---EAYELKSLDA 144 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NIPLEDWKRYQIDTR 256 + ++ G + + I+T N W F + K + Sbjct: 145 FKTVEE----TMRGEIDDPDGYYQSIITFNPWSDQHWLKREFFDQDTKNPRSKSFTTTYE 200 Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA 316 +D + + + + AR+ + G + + + S D Sbjct: 201 DNPYLDDDYIASLKDMVKRNPNRARVAVYGDW-GIAEGLVFDGLFEQRDFS--MEDIAAL 257 Query: 317 PLIMGCDIAGEGGDKTV 333 P +G D G D T Sbjct: 258 PKAVGLDF-GFKHDPTA 273 >gi|323703887|ref|ZP_08115520.1| hypothetical protein DesniDRAFT_2732 [Desulfotomaculum nigrificans DSM 574] gi|323531136|gb|EGB21042.1| hypothetical protein DesniDRAFT_2732 [Desulfotomaculum nigrificans DSM 574] Length = 525 Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 38/365 (10%), Positives = 84/365 (23%), Gaps = 104/365 (28%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 + + + N++ N IS R +G TT + LWL TRP + + ++ + Sbjct: 40 ILNEQQEYFYQNMDKFN------IISKSRQLGFTTYSLAYCLWLACTRPNTNCLIVSYNV 93 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177 +++ + + + +P ++ + +++ I Sbjct: 94 EST-QSIFERLKQMFASIPDKY-----------KPAERRNNRMELYLENNSRIIV----- 136 Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF--TELNPNRFWIMTSNTRRLNG 235 + + E + PD K L I+ T Sbjct: 137 -KTAGVKSLGRGMTLQYILLSEFAFYPDDQQKDSLVSLEQALAKNEDSKIVIETTSNGYN 195 Query: 236 WFYDIFNIPLE---DWKRYQIDTR----------------------TVEGIDSGFHEGII 270 ++ +F + +K + Sbjct: 196 YYQKLFMSAYKGNSKYKAFFFPWYSSATSNQFKHEIDLAEKWFRLNNHGHRMRPEDLERD 255 Query: 271 SRYGLDSD-----VARIEIL----------GQFPQQEVNNF-------IPHNYIEEAMSR 308 + + +FP +F I E ++ Sbjct: 256 EIPLREKGISFKLLMWRRWKLEDISIEDFNQEFPSTPEESFKATSRSVFDTQKITERLNY 315 Query: 309 EAID----------------------------DLYAPLIMGCDIA-GEGGDKTVVVFR-- 337 +G D A G GGD + + Sbjct: 316 ILPPLSRADIKKELPFSLDQYLGKGFFIYQNVKANERYYIGVDTASGNGGDYSAISVFDS 375 Query: 338 RGNII 342 +G + Sbjct: 376 QGEQV 380 >gi|296444753|ref|ZP_06886716.1| Terminase [Methylosinus trichosporium OB3b] gi|296257701|gb|EFH04765.1| Terminase [Methylosinus trichosporium OB3b] Length = 531 Score = 60.3 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 47/318 (14%), Positives = 86/318 (27%), Gaps = 57/318 (17%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR---PGM 108 WQ + V CH + + + RG KT+L A + L PG Sbjct: 47 TPWQERIVRRVYGPCHPDGRR---IVRNVVMLLPRGNRKTSLGAGLGLLHAIGPERIPGG 103 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 + A+ Q + + E + E +L + + G + Sbjct: 104 LALFAASDGEQAR-IAFEEAAAICR------EDERIEKALRFIDYRHRIEHPKSGASLRA 156 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP-DIINKSILGFFTELNPNRFWIMT 227 + H + DE P + + + + ++T Sbjct: 157 ISCDAA-----------RQHGSTPTFALVDELHAWPKRDLWDVLRTGLVKTPGSLLVVIT 205 Query: 228 SNTRRLNGWFYDIFNIPLE----------------------DWKRYQIDTRTVEGIDSGF 265 + R Y+I + + DW+ I R G+ GF Sbjct: 206 TAGRGQQNVAYEIVDYARKVARGEIEDPGTLPILFETAADADWRDEGIWRRANPGLAQGF 265 Query: 266 --------HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYA 316 D + + L + V+ F+ +E + Sbjct: 266 PDIEGLRQLAREAEARPADREAFKQLHLNVWLDHSVDPFVDMQIYDEGAEPLDLEALADE 325 Query: 317 PLIMGCDIAGEGGDKTVV 334 P +G D++ D TVV Sbjct: 326 PCYLGVDLS-SNSDLTVV 342 >gi|295111846|emb|CBL28596.1| Mu-like prophage FluMu protein gp28 [Synergistetes bacterium SGP1] Length = 532 Score = 60.0 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 40/293 (13%), Positives = 89/293 (30%), Gaps = 40/293 (13%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 + ++ + + S + + + F+ + + R IG + L +L R I+ A+ Sbjct: 123 EKALDKLYAYQRSFLLDD--SRFRVCLKS-RQIGFSFLLGLEVLLGAIERGDNQIVISAS 179 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 + + + KW L + D + Sbjct: 180 QDQS--DIVRNYAVKWCKDL-----------------------DVDYLEDGGNIIFPGGA 214 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEAS--GTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233 + P G V+ DE + ++ ++ + T +TS Sbjct: 215 IAYFLPCNPRTVQGYTGD-VYLDEFAWHMRGRLMWQAAVPAATTKGKRL--TVTSTPYTE 271 Query: 234 NGWFYDIFNIPLE--DWKRYQIDTRT-VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290 F +I P + + R+ + V+ E + + D+ +F Sbjct: 272 TDMFGEIVTNPDKYPRFSRHTVTIYDAVKDGHQVDIEELRGLF--DAITFAQAYECRFFA 329 Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIE 343 E+ P + + + + + + A + G DI D T +V +E Sbjct: 330 DELCLLQP-DEVRAVLDDDCLRHVSAWVNGGVDIGRT-KDVTAIVLAEQLQVE 380 >gi|327197586|ref|YP_004301277.1| gp2 [Brochothrix phage NF5] gi|296245409|gb|ADH03023.1| gp2 [Brochothrix phage NF5] Length = 425 Score = 60.0 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 35/291 (12%), Positives = 80/291 (27%), Gaps = 31/291 (10%) Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 I GRG GK++ A ++ + R ++ + I + L+ +L+ ++ + Sbjct: 23 EQILNIVCKGGRGSGKSSDIA-HVITQLLMRYAVNAVGIRYVDNTLEQSLYEQMKWAIEQ 81 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 H F+ L + + + R + Sbjct: 82 QGVTHLFKFNKSPLR------------ITYIPRGNYMIFRGAQNPERIKSLKDSKFPFAI 129 Query: 195 VFNDE-ASGTPDIINKSILGFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLE 246 + +E A + +I + + N R W + E Sbjct: 130 GWIEELAEFKNEEEVTTITNSLLRGELGNGLFYKFFYSYNPPKRKQSWVNKKYETSFQPE 189 Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN--YIEE 304 + + + I F + + + + A E G+ +P + + Sbjct: 190 NTFVHHSTYKDNPFIAKEFLKEVEAARERNPRRAEWEYDGKAIGSG---VVPFDNLKVVA 246 Query: 305 AMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR----GNIIEHIFDWSAK 351 + + + + D G D V N I I ++ + Sbjct: 247 GSITDDMTANFDNVRNAVDF-GYATDPLAFVRWHYDKKHNCIYAIEEYFGQ 296 >gi|284164527|ref|YP_003402806.1| hypothetical protein Htur_1243 [Haloterrigena turkmenica DSM 5511] gi|284014182|gb|ADB60133.1| hypothetical protein Htur_1243 [Haloterrigena turkmenica DSM 5511] Length = 514 Score = 60.0 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 36/259 (13%), Positives = 71/259 (27%), Gaps = 31/259 (11%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 A AG G GK+ L A +L P + + T+ +++ + + LP Sbjct: 79 VAFLAGYGSGKSILGARWLLAQALAHPDSRFLAMGVDFTKARDSTFRIL---CEQLPGAR 135 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 P + D++ A++ DE Sbjct: 136 TALRTGTINGPESSPIVADF--NRGAHRLTLTNGSVIVLGAADSWNRYAGDEFGAIWLDE 193 Query: 200 ASGTP---DIINKSILGFFTELNPNRF--WIMTSNTRRLNGWFYDIFNIPLED------- 247 S + + + G + + W +T N ++I + Sbjct: 194 PSHYETDLHDLLEMLGGRLRGVAGPKVQCWTLTGN---GYNDAWEILEQRQDSTGDPIGL 250 Query: 248 -WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE---------VNNFI 297 + + T +D+G R D+D + G F + + I Sbjct: 251 AIELVRASTLDNPYLDAG-TRERYERQFGDTDREAQALRGGFAAAQGLVYTKFSRDTHVI 309 Query: 298 PHNYIEEAMSREAIDDLYA 316 PH + + + Y Sbjct: 310 PHAAATDRVIADWRVYGYD 328 >gi|257891069|ref|ZP_05670722.1| terminase large subunit [Enterococcus faecium 1,231,410] gi|257893878|ref|ZP_05673531.1| terminase large subunit [Enterococcus faecium 1,231,408] gi|260558861|ref|ZP_05831050.1| terminase large subunit [Enterococcus faecium C68] gi|257827429|gb|EEV54055.1| terminase large subunit [Enterococcus faecium 1,231,410] gi|257830257|gb|EEV56864.1| terminase large subunit [Enterococcus faecium 1,231,408] gi|260075320|gb|EEW63633.1| terminase large subunit [Enterococcus faecium C68] Length = 432 Score = 60.0 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 35/275 (12%), Positives = 75/275 (27%), Gaps = 27/275 (9%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 N I GRG GK++ A ++ + R ++ + I + L+ +L+ ++ + Sbjct: 22 NQDILNIVCKGGRGSGKSSDIA-HIVTQLLMRYAVNAVGIRYVDNTLEQSLYEQMKWAIE 80 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 H F+ L + + + R + Sbjct: 81 QQGVSHLFKFNKSPLK------------ITYLPRGNYMIFRGAQNPERIKSLKDSKFPFA 128 Query: 194 AVFNDE-ASGTPDIINKSILGFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFNIPLED 247 + +E A + +I + + N R W + + Sbjct: 129 IGWIEELAEFKTEDEVTTITNSLLRGELDDGLFYKFFYSYNPPKRKQSWVNKKYETSFQP 188 Query: 248 WKRY--QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN--YIE 303 + + I F + + + A E G+ +P + IE Sbjct: 189 KNTFIHHSTYKDNPFISKEFLSEVEAARARNPRRAEWEYDGKAIGSG---VVPFDNLRIE 245 Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338 + + + + G D G D V Sbjct: 246 AGSITDEMVANFDNIRQGLD-YGYATDPLAFVRWH 279 >gi|224541923|ref|ZP_03682462.1| hypothetical protein CATMIT_01096 [Catenibacterium mitsuokai DSM 15897] gi|224525157|gb|EEF94262.1| hypothetical protein CATMIT_01096 [Catenibacterium mitsuokai DSM 15897] Length = 419 Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 37/278 (13%), Positives = 69/278 (24%), Gaps = 25/278 (8%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 V H +N + GRG K++ + I ++ A Sbjct: 15 AFYEVHKHVKNNDYTHY------WLKGGRGSLKSSFIGVEIPLGIMRDAQRGVMSNAVIM 68 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177 ++K+TL V + + ++ + W + M I + Sbjct: 69 RRVKDTLRDSVYEQIKWGIYKLGAQ--------DDWLIPESKLKMTYMPTGQQIIFKGAD 120 Query: 178 EERPDTFVGPHNTHGMAVF---NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 E + H + V+ DE I N I + N Sbjct: 121 EPKKMKSTKVHIGYVKYVWYEECDEFETYDKITN--INQSLLRGGHEYCVFYSFNPPESQ 178 Query: 235 -GWFYDIFNIPLEDWKRYQIDTRTVE--GIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291 W + +D + F + + + LG+ Sbjct: 179 RNWCNRQVLVKRDDTYVSHTTYLQAPPEWLGEQFLIEAEHTKKTNIEKYNHDYLGEVTGT 238 Query: 292 EVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329 F + E + D++ L G D G Sbjct: 239 GSEVFTNLDIRE---ITKEEIDVFDRLKFGLDFGYAGD 273 >gi|152989642|ref|YP_001347771.1| hypothetical protein PSPA7_2404 [Pseudomonas aeruginosa PA7] gi|150964800|gb|ABR86825.1| hypothetical protein PSPA7_2404 [Pseudomonas aeruginosa PA7] Length = 436 Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 32/277 (11%), Positives = 77/277 (27%), Gaps = 33/277 (11%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 AG G GKT + + P ++ A + Q+++ + + + Sbjct: 28 AGFGSGKTWVGCSGLAQHAWEWPRINAGYFAPTYAQIRDIFYPTMEEVA----------- 76 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 G ++ + + + + T + DE Sbjct: 77 -----FDWGLRTKINQANHEVHLYSGSAYRTTIICRSMEKPQTIVGFKVGRSLVDELDVL 131 Query: 204 P----DIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIF-------NIPLEDWKRY 251 + I+ +++ R + + T + + F + + Sbjct: 132 SLVKAQQAWRKIIARMRYKVDGLRNRVDVTTTPEGFKFVFQQFVKQLREKPHLQDLYGLV 191 Query: 252 QIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310 Q T E + + + ++ Y + + GQF Y + + Sbjct: 192 QASTYDNEANLPDDYIDSLMESY--PPQLIAAYLRGQFVNLTSGTIYT-AYDRTLNASQE 248 Query: 311 IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347 + P+ +G D G VV +R + + + Sbjct: 249 MVQPGEPIFVGMDF-NVGKMAAVVHVKRMGLPHAVDE 284 >gi|327331008|gb|EGE72751.1| hypothetical protein HMPREF9338_01045 [Propionibacterium acnes HL096PA2] Length = 503 Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 46/343 (13%), Positives = 97/343 (28%), Gaps = 45/343 (13%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 + P WQ + ++ + S C + R GK + + L+ + + Sbjct: 32 AYGLTPDPWQQQVLDDWLAVGSNGRLASGV----CGVFVPRQNGKNAILEVVELFKATIQ 87 Query: 106 PGMSIICIANSETQLKNTLWAE--VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163 G I+ A+ + + P + ++S+ L Sbjct: 88 -GRRILHTAHELKSARKAFMRLRSFFENERQFPDLYR-MVKSIRATNGQEAIVLHHPDCA 145 Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT-ELNPNR 222 K E + + DEA D +++L + + + Sbjct: 146 TFEKKCGCPGWGSVEFVARSRGSARGFTVDDLVCDEAQELSDEQLEALLPTVSAAPSGDP 205 Query: 223 FWIMTSNTR------------------RLNGWFYDIFNIPLE--------DWKRYQIDTR 256 I + + F+IP E W++ DT Sbjct: 206 QQIFLGTPPGPLADGSVVLRLRGQALGGGKRFAWTEFSIPDESDPDDVSRQWRKLAGDTN 265 Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ-EVNNFIPHN-YIEEAMSREAIDDL 314 G F + + E LG + + ++ IP + +++ A+ A+ Sbjct: 266 PALGRRLNFGTVSDEHESMSAAGFARERLGWWDRGQSASSVIPADKWVQSAVGEAALV-- 323 Query: 315 YAPLIMGCDIAGEGGDKTVVV----FRRGNIIEHIFDWSAKLI 353 + G + G D+ + G +E I S ++ Sbjct: 324 -GGKVFGVSFSRSG-DRVALAGAGRTDAGVHVEVIDGLSGTIV 364 >gi|77463780|ref|YP_353284.1| Phage terminase-like protein large subunit [Rhodobacter sphaeroides 2.4.1] gi|77388198|gb|ABA79383.1| Phage terminase-like protein large subunit [Rhodobacter sphaeroides 2.4.1] Length = 551 Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 36/308 (11%), Positives = 74/308 (24%), Gaps = 50/308 (16%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLIST------RPGMSIICI 113 + V S + + GRG KT L+A + L + +P I+ Sbjct: 71 KLAEFQCRFVRGSMAPGVMVGVLSIGRGNAKTALSAGLALAELVGALHPKPQPKREILFA 130 Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173 A + Q K V ++ LP E Sbjct: 131 ARNRDQAKTAFQFLVG-YIDGLPEEDRAGFTIRRGSKLEVEFEGN--------------G 175 Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSN 229 + DE + D + +IL + + I TS Sbjct: 176 GGLARVIAADGKSILGGAPTLALMDERAAWEREKGDNLENAILSGLGKRDGRALIISTSA 235 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVE------------------GIDSGFH--EGI 269 N + + P + + + G + + Sbjct: 236 PDDANTFSRWLDEPPPGTYVQEHRPAFGLPADDLPSLLEANPGAAEGIGSTPEWLVAQAR 295 Query: 270 ISRYGLDSDVARIEILGQFPQQEVN----NFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325 + S ++ L + + ++ ++ + + P ++G D+ Sbjct: 296 RAIARGGSALSSFRNLNRNERVSTEDRSVLVTVDEWLSAEVAPDELPPRSGPCVLGVDLG 355 Query: 326 GEGGDKTV 333 G Sbjct: 356 GSRSMSAA 363 >gi|293396801|ref|ZP_06641076.1| prophage LambdaSa04 protein [Serratia odorifera DSM 4582] gi|291420708|gb|EFE93962.1| prophage LambdaSa04 protein [Serratia odorifera DSM 4582] Length = 669 Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 39/318 (12%), Positives = 89/318 (27%), Gaps = 59/318 (18%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ + ++ +N + F+ A + +G+G GK+ L+A + L+ + P Sbjct: 178 PWQAFVVGSIFGWKRANGSR----RFRTAYVESGKGSGKSPLSAGIGLYCLMADKEPRAE 233 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 + A + Q L+ + ++ P ++ ++ S G + Sbjct: 234 VYAAATKKDQAM-ILFRDAVAMVNQSP----------------ALSQRIDPSGGAGKEWN 276 Query: 170 TITCRTYSEERP-DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 +T S RP + G DE D ++ T+ M + Sbjct: 277 LAFLQTGSFFRPISSDDGQSGPRPHCALIDEVHEHKDNKAVEMMRAGTKGRRQALIFMIT 336 Query: 229 NTR-RLNGWFYDIFNIP---------------------------LEDWKRYQIDTRTVEG 260 N+ Y+ ++ + + Sbjct: 337 NSGHDKTSVCYEYHQYGKQLAAGQKTNDAFFAFICSLDEGDDPFKDESCWAKANPSMGHT 396 Query: 261 IDSGFHEGIISRYGL---DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR-EAIDDLYA 316 + + + R ++ N +I + + + Sbjct: 397 FQPEYLREQVEDARGMPSKESLVRRLNFCEWVD-AENPWIGGDVWMACEKTFDIAELQGR 455 Query: 317 PLIMGCDIAGEGGDKTVV 334 G D++G+ D T + Sbjct: 456 MCYGGLDLSGK-RDLTAL 472 >gi|146328895|ref|YP_001209648.1| phage terminase, large subunit [Dichelobacter nodosus VCS1703A] gi|146232365|gb|ABQ13343.1| phage terminase, large subunit [Dichelobacter nodosus VCS1703A] Length = 424 Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 28/272 (10%), Positives = 64/272 (23%), Gaps = 38/272 (13%) Query: 91 TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150 + A ++ P +CI + L++++ A V + L F++Q + Sbjct: 34 SHFFAERIVEEHIINPNRKTVCIREIQKSLRHSVKALVESKIEALGVSSAFDIQRDLILN 93 Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS 210 G + + + + D+ + +EA Sbjct: 94 RG--------------GNGLMIFQGMQDHTADSIKSL--EDFDCAWIEEAQSISKRSLSL 137 Query: 211 ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP-LEDWKRYQIDTRTVEGIDSGFHEGI 269 + + N W N + + E+ ++ R Sbjct: 138 LRPTIRKQNSE-IWASW-NPQLKTDPIDQFLRVDCPENSITVAVNLRDNPFASEEIWREY 195 Query: 270 ISRYGLDSD-----------VARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318 G + + Y + E +Y + Sbjct: 196 RDDRERAKRKAAAGDKNAWGEFEHIWHGAYRSHSAAQVLAGCYRVADFAIEPHWSIYHGV 255 Query: 319 IMGCDIAGEGGDKTVV---VFRRGNIIEHIFD 347 G D TV+ + +I + Sbjct: 256 DWG-----FASDPTVLVRCYLDEAARVLYIAE 282 >gi|119385360|ref|YP_916416.1| phage terminase [Paracoccus denitrificans PD1222] gi|119375127|gb|ABL70720.1| phage Terminase [Paracoccus denitrificans PD1222] Length = 544 Score = 60.0 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 39/308 (12%), Positives = 80/308 (25%), Gaps = 50/308 (16%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLIST------RPGMSIICI 113 + V + + + GRG KT L+A + L + +P II Sbjct: 64 KLANFQKKFVKGAFGKGVTVGVLSIGRGNAKTALSAGLALAELVGALQEDPQPNREIIFA 123 Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173 A + Q + + V +++ LP + + + Sbjct: 124 ARNRDQAR-IAFNFVLGYINGLPESDQAQFTIRR---------GSKLEIEFGG-----NG 168 Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSN 229 + DE + D + +IL + + I TS Sbjct: 169 GGLARCIAADGKSILGGAPTLAIMDERAAWEREKGDNLENAILSGLGKRDGRALIISTSA 228 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVE------------------GIDSGFH----E 267 N + + P + + + G + + Sbjct: 229 PDDTNTFSRWLDEPPPGSYVQEHRPPFGLPADDLESLLLANPGAAEGIGSTPEWLLSAAK 288 Query: 268 GIISRYGLDSDVARIEILGQFPQQEVNNFIPH--NYIEEAMSREAIDDLYAPLIMGCDIA 325 I+R G R + E + + ++ ++ E + P I+G D+ Sbjct: 289 TAIARGGAALSSFRNLNRNERVSIENRSVLVTVDEWLSAEVAPEDLPPREGPCILGVDLG 348 Query: 326 GEGGDKTV 333 G Sbjct: 349 GSRSMSAA 356 >gi|253699636|ref|YP_003020825.1| DNA packaging protein GP17 (terminase) [Geobacter sp. M21] gi|251774486|gb|ACT17067.1| putative DNA packaging protein GP17 (terminase) [Geobacter sp. M21] Length = 504 Score = 60.0 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 47/384 (12%), Positives = 94/384 (24%), Gaps = 88/384 (22%) Query: 41 KGKPLEHFSQPHRWQL----EFMEAVDVHCHSNVNNSNPTIFKC-----AISAGRGIGKT 91 K LE W+L + ++ +N+ + K I R G T Sbjct: 2 KATELEEKLGSRLWRLNNLYKVIDKDGNLIQFRLNHVQKELLKNLWYLNVILKSRQQGIT 61 Query: 92 TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151 T + L L + +A+ + ++ LP + Sbjct: 62 TFICILFLDLALFSENIHCGIVAHRLPDAQTFFDDKIRFAYDNLPE---------EIRER 112 Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211 + + + + T+ H + + + P + Sbjct: 113 ITLVKDTSMRLVFSNGSKITVGVSLR---SGTYQYLHISELGKI----CAQFPKKALEIK 165 Query: 212 LGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-----------DWKRYQIDTRTVE- 259 G + + + S +G FY + DW+ + Sbjct: 166 SGALNTIKAGNYIFIESTAEGRSGDFYSYCQLAENGLREGKELTLLDWRFHFFGWTLDPA 225 Query: 260 -----------GIDSGFHEGIISRYGLDSDVARIEILG-------------QFPQQEVNN 295 + + ++GL +D + ++P Sbjct: 226 ARLNPEGVTITQELHEYFRELEVKHGLVTDDWQRAWYAKKLLQQGVDMMYREYPATSEEA 285 Query: 296 FIPHNYIEEAMSRE---------------AIDDLYAPLIMGCDIAGEGGDKTVVVFRR-- 338 F I A ++ + P+ D+ D T +VFR+ Sbjct: 286 FFAA--IHGAYYKQQMLKLRQQVPPRFATVPWEPKLPVDTAWDLGM--DDTTCIVFRQRY 341 Query: 339 GNIIEHIFDWSAKLIQETNQEGCP 362 G I E + EG P Sbjct: 342 GTQNRLI------DYHENSGEGLP 359 >gi|332522503|ref|ZP_08398755.1| putative phage terminase, large subunit [Streptococcus porcinus str. Jelinkova 176] gi|332313767|gb|EGJ26752.1| putative phage terminase, large subunit [Streptococcus porcinus str. Jelinkova 176] Length = 470 Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 37/297 (12%), Positives = 78/297 (26%), Gaps = 44/297 (14%) Query: 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 WQ + + + + R GKT + + LW + G+ I+ Sbjct: 43 WQKNMLSPIMAIDEDGLWVHQKYGYAI----PRRNGKTEIVYILELWGL--HKGLKILHT 96 Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173 A+ + + + ++ K+L M + + + + + Sbjct: 97 AHRISTSH-SSFEKLKKYLEMSGYVD--------------GEDFISNKAKGQERIEFKSS 141 Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233 + + R T G + DEA ++ T+ + +M + Sbjct: 142 GSVIQWRTRTSNGGLGEGFDLLVIDEAQEYTSEQESALKYTVTDSDNPMT-VMCGTPPTM 200 Query: 234 ---------------------NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISR 272 +GW + + I + Sbjct: 201 VSTGTVFESYRKEVLKGAKKYSGWAEWSVSEMTKIDDVQSWYIANPSMGFHLNERKIEAE 260 Query: 273 YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329 G D I+ LG +P + I + E +L L +G +G Sbjct: 261 LGDDEIDHNIQRLGYWPTFNQKSVISEKEW-GKLKVEQTPELSGKLFVGIKFGQDGN 316 >gi|192292355|ref|YP_001992960.1| Terminase [Rhodopseudomonas palustris TIE-1] gi|192286104|gb|ACF02485.1| Terminase [Rhodopseudomonas palustris TIE-1] Length = 540 Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 43/336 (12%), Positives = 93/336 (27%), Gaps = 64/336 (19%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS---TRPGM 108 WQ + + N + + + RG KT+L A + L RPG Sbjct: 49 DEWQDRIVRRIYGPRDQNGHR---IVKTVVLLLPRGNRKTSLAAALSLLHTIGPERRPGG 105 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 I A Q + E + + +++ ++ + +++ + Sbjct: 106 EAIFAAGDRPQAS-LGFKEAAGIIR----EDKRLVKATRIYDA---HNSVKKIVFNKDGS 157 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMT 227 + E H F DE + + +I + + I T Sbjct: 158 FL-------EAISGEGAPAHGRTPAFAFVDELHIWKNADLWTAIKSGLPKTQGSLLIIAT 210 Query: 228 SNTRRLNGWFYDIFNIPLE----------------------DWKRYQIDTRTVEGID--S 263 + R + ++I + + DW+ + R G+ Sbjct: 211 TAGRGQDNIAHEIVDRARKVARGDIDDPSLLPILFETPDDADWRDEALWHRANPGLALGY 270 Query: 264 GFHEGIISRYGLDS------DVARIEILGQFPQQEVNNFIPHNYIEEAMSR-EAIDDLYA 316 EG+ + R L + + + F+ ++ + Sbjct: 271 QDIEGLRQLAREGETSITARETFRQYNLNVWLDRSTDPFVEMAVYDQGADPVDLEALKGR 330 Query: 317 PLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352 P +G D++ + D TV+ + W Sbjct: 331 PCWLGVDLSSQ-TDLTVI----------VAAWRDDD 355 >gi|317473130|ref|ZP_07932428.1| phage terminase [Anaerostipes sp. 3_2_56FAA] gi|316899354|gb|EFV21370.1| phage terminase [Anaerostipes sp. 3_2_56FAA] Length = 499 Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 28/245 (11%), Positives = 64/245 (26%), Gaps = 19/245 (7%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 GRG K++ + +L LI M + + L+ +++ ++ + L F Sbjct: 119 PGGRGSTKSSFISLNVLDLIMKNDDMHAVVMRQVADTLRGSVYQQMLWAIEALGLSEDFH 178 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 + + S I R + + + ++ +E Sbjct: 179 ATVSPM------------EITRISTGQKIYFRGADDPGKVKSIKVPFGYIGILWLEELDQ 226 Query: 203 TP-DIINKSILGFFTELNPNRFWIMTSNTRR-LNGWFYDIFNIPLEDWKRYQIDTRTVE- 259 + I + + N + W IP E + Sbjct: 227 FTGPESVRKIEQSVIRGGEYAYIFKSFNPPKSKGNWANKYIKIPKETRLVTHSTYMDIPK 286 Query: 260 -GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318 + F + ++ E +G+ + I E + + + Sbjct: 287 KWLGKPFLDEAEFLKEVNPAAYDNEYMGE-ANGNGGQVFDNVTIRE--ITDEEIAQFDRI 343 Query: 319 IMGCD 323 G D Sbjct: 344 YNGVD 348 >gi|167754216|ref|ZP_02426343.1| hypothetical protein ALIPUT_02509 [Alistipes putredinis DSM 17216] gi|237711925|ref|ZP_04542406.1| predicted protein [Bacteroides sp. 9_1_42FAA] gi|167658841|gb|EDS02971.1| hypothetical protein ALIPUT_02509 [Alistipes putredinis DSM 17216] gi|229454620|gb|EEO60341.1| predicted protein [Bacteroides sp. 9_1_42FAA] Length = 529 Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 27/253 (10%), Positives = 57/253 (22%), Gaps = 33/253 (13%) Query: 90 KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLH 149 K+ + + ++ + + + LK + W + + W + + Sbjct: 82 KSYIGSVWLVSSCIRFENIRAVVARKTLKSLKESTWNTI-----KSILKDWGLKEDTN-- 134 Query: 150 PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209 + LE ++ + I F ++ DE S + + Sbjct: 135 ---YKINNLEGTLTFWNDSVIIMKEMADIPSDPNFERFGSSEYTIAMVDEVSEISERAVE 191 Query: 210 SILGFFTELNPNRF----WIMTSNTRRLNGWFYDIFNIP--------LEDWKRYQIDTRT 257 + F ++T+N W F E Sbjct: 192 VLFSRLRWRTHETFKTPRMLLTTNPT--INWVRSRFVQDENGDKVICREGEAYIPFSVFD 249 Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILG--QFPQQEVNNFI-----PHNYIEEAMSREA 310 I D + G F + + + + Sbjct: 250 NPNIAFRQVYEAALNKIRDQATKERLLYGNWDFVEANDMAIYNSFDGSRHLVTGLKEKAY 309 Query: 311 IDDLYAPLIMGCD 323 D PLI D Sbjct: 310 --DPTKPLITVWD 320 >gi|322412171|gb|EFY03079.1| phage terminase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 471 Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 39/298 (13%), Positives = 76/298 (25%), Gaps = 44/298 (14%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ + + + + R GKT + + LW + G+ I+ Sbjct: 43 PWQENMLIPIMAIDEDGLWVHQKYGYAI----PRRNGKTEVVYIVELWAL--HKGLKILH 96 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 A+ + + +V K+L M + + + + Sbjct: 97 TAHRISTSH-ASFEKVKKYLEMSGYVD--------------GEDFISNKAKGQERIEFKA 141 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR- 231 + R T G + DEA ++ T+ + IM Sbjct: 142 SGAVIQFRTRTSNGGLGEGFDLLIIDEAQEYTSEQESALKYTVTDSDNPMT-IMCGTPPT 200 Query: 232 --------------------RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271 R +GW ++ I + Sbjct: 201 IVSTGTVFEAYRKDCLKGNKRYSGWAEWSVPEMVKINDVSSWYISNPSMGFHLNERKIEA 260 Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329 G D I+ LG + + I + E + +L + L +G +G Sbjct: 261 ELGEDEIDHNIQRLGYWSSFNQKSVISEKEW-AKLKVEQVPELKSKLFVGIKFGQDGN 317 >gi|262380916|ref|ZP_06074065.1| terminase [Acinetobacter radioresistens SH164] gi|262297448|gb|EEY85368.1| terminase [Acinetobacter radioresistens SH164] Length = 517 Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 41/305 (13%), Positives = 79/305 (25%), Gaps = 55/305 (18%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW--LISTRPGMSI 110 WQ++++ + +N + A+ R GKT L A + L+ P Sbjct: 44 DWQIKYLREL--FGWRRKDNHKRRYRQSALFISRKQGKTELAAAIALYCLHCENEPAAQC 101 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 +A Q + + + EL +S Sbjct: 102 YNVAADTDQA--------------------ALCFNAAKAMTENEHELDSRSEIYKRSILV 141 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 + + H + DE D + T N + TS Sbjct: 142 PNSGSVYRVLSSSASTKHGLNVHYCGIDELHCIDDRELVDVFTTGTLARNNSLILYTSTA 201 Query: 231 RRLNGW-FYDIFNIPLE----------------------DWK----RYQIDTRTVEGIDS 263 Y+I++ + DWK +D Sbjct: 202 GFNKNSICYEIWDYAQKVRDGIIDDPTFLPCIYEAPADADWKDPATWQAACPSMGHTVDL 261 Query: 264 GFHEGI---ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIM 320 F+E + +V R L Q+ + + ++ ++ + D P Sbjct: 262 SFYEQECLKAQQVPAYENVFRRLYLNQW-TESDSRWLSSTIWDDCKNLNYPDLAGQPCYA 320 Query: 321 GCDIA 325 G D++ Sbjct: 321 GLDLS 325 >gi|292496028|gb|ADE29129.1| terminase [uncultured virus] Length = 509 Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 43/304 (14%), Positives = 93/304 (30%), Gaps = 35/304 (11%) Query: 37 PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96 P G+ P + RW+ + A++ + + A AG G GKT L A Sbjct: 42 PDGMDWDPESNILTYDRWEAQ-RRAIETTNQEHTDI-------AAFLAGYGSGKTLLGAR 93 Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156 ++ + + + ++T + + + L S + + Sbjct: 94 WLIKQALQYDSSRFLALGIDFQKARDTTFRVLFEQLP-----GDRTGIVTSSYNGPEESP 148 Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD---IINKSILG 213 ++ D + + D + V+ DE D + + + Sbjct: 149 IVVDYNRKDHRLTLVNDTVIKLGSADRWNRYAGDSYGGVWADEVGHYGDDLHDLLEMLGS 208 Query: 214 FFTELNPN--RFWIMTSNTRRLNGWFYDIFNIPLE--------DWKRYQIDTRTVEGIDS 263 + + W +T N +DI L+ + + + T + Sbjct: 209 RLRGVGGPQTQLWTLTGN---GKNAAFDIIERGLDANGDKIGLNIETVKASTLENPYLSD 265 Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI--MG 321 E +YG S + + G F N + + + + ++ D L+ +G Sbjct: 266 SEKERFKRQYGNTSREGQA-LHGGF-SAGEGNLLNRD--QLSFIDKSNYDGGENLVFYIG 321 Query: 322 CDIA 325 D+A Sbjct: 322 VDLA 325 >gi|13186147|emb|CAC33458.1| hypothetical protein [Legionella pneumophila] Length = 453 Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 29/266 (10%), Positives = 69/266 (25%), Gaps = 33/266 (12%) Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA----EVSKWLSMLPHRHWF 141 R GK + + WL+++ + + Q KN +W E +W+ ++P +H Sbjct: 40 RRFGKDAMFFNLA-WLVASMTRGNYLYTLPKIGQAKNVIWEGTDLEGRRWIDLIP-KHLL 97 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + ++ S S +F E Sbjct: 98 AREPNQSERKIYFT----------SGSMLHITGADSILGAHLGSNLRG-----LFMSEFQ 142 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI 261 T + + + ++ + + I N+ W ++ Sbjct: 143 RTAPKVWDYLRP-IINRSQGFACFNYTSFGQCHAHRLRIANLHNPAWHCRKLTVNDTRDN 201 Query: 262 DSGFHE-----GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD--- 313 + + G+D D+ + E + + + + Sbjct: 202 QGNYIFSPEQIEDERKSGMDEDLIQQEYYCDDSVAVKGTYFAEHIQKARAEGRIVPTLEI 261 Query: 314 -LYAPLIMGCDIAGEGGDKTVVVFRR 338 P+ D+ D + F + Sbjct: 262 YPSKPVHTSWDLG--SKDTNSIWFFQ 285 >gi|315650013|ref|ZP_07903093.1| PBSX family prophage LambdaCh01 protein [Eubacterium saburreum DSM 3986] gi|315487783|gb|EFU78086.1| PBSX family prophage LambdaCh01 protein [Eubacterium saburreum DSM 3986] Length = 425 Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 39/284 (13%), Positives = 87/284 (30%), Gaps = 24/284 (8%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISAG-RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119 + + + G R K+ A +W I P +++ + Sbjct: 12 QLPEVVGRGYGTYWRYKGRYRVCKGSRASKKSKTTALWYIWAIMKYPQANLLVVRKVFRT 71 Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 LK++ + E+ + L + +E + L + + + IT T + Sbjct: 72 LKDSCFTELKWAIRRLKVENHWEEKESPLEMT-YIPTGQKIYFRGLDDPLKITSITVEQG 130 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDII-----NKSILGFFTELNPNRFWIMTS-NTRRL 233 + ++ +EA + ++SI G + I + N Sbjct: 131 -----------YLCWMWLEEAYEISNENDFNMLDESIRGAIPKDVKLFKQITITLNPWNE 179 Query: 234 NGWF-YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292 + W F+ P ++ + E +D + S + ++ LG++ Sbjct: 180 HHWIKKRFFDTPDDEVLAMTTNYLCNEWLDKADLKVFESMKKNNPRRYQVAGLGEW--GI 237 Query: 293 VNNFIPHNYIEEAMSR-EAIDDLYAPLIMGCDIAGEGGDKTVVV 335 V + N+ E+A E + G D D + + Sbjct: 238 VEGLVYENWEEKAFDIGEVKKISTIQSVFGLDFGYT-NDPSALF 280 >gi|224542959|ref|ZP_03683498.1| hypothetical protein CATMIT_02153 [Catenibacterium mitsuokai DSM 15897] gi|224524097|gb|EEF93202.1| hypothetical protein CATMIT_02153 [Catenibacterium mitsuokai DSM 15897] Length = 479 Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 39/298 (13%), Positives = 75/298 (25%), Gaps = 33/298 (11%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ M + + R GK+ + LW + G I+ Sbjct: 39 EWQEIQMMDIMAVDDDGQWVHIKYGYSI----PRRNGKSEILVMRELWGLLH--GEKILH 92 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 A+ T W ++ + L + + + A G+++ Sbjct: 93 TAHRTTTSH-ASWEKLKQMLDENDYTEVKRADKEKTYEKSYTATA---QFGLETIKILDD 148 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR- 231 + R + G + DEA + ++ T + +M Sbjct: 149 GGGSASFRTRSSKGGLGEGFDLLIVDEAQEYTEDQQSALQYVVTSSENPQT-LMCGTPPT 207 Query: 232 --------------------RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271 +GW + R + + + Sbjct: 208 AVSSGTVFVNLRKECLSGGSDTSGWAEWSVEHMSDVKDRDIWYETNPSLGQTLKERSVAA 267 Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329 D I+ G + Q + I N A+ E I + PL +G +G Sbjct: 268 EDSSDEIDFNIQRFGLWLQYNQKSAISENEWN-ALKVETIPEFKGPLFVGIKYGHDGS 324 >gi|311067750|ref|YP_003972673.1| PBSX defective prophage terminase large subunit [Bacillus atrophaeus 1942] gi|310868267|gb|ADP31742.1| PBSX defective prophage terminase (large subunit) [Bacillus atrophaeus 1942] Length = 432 Score = 59.6 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 36/280 (12%), Positives = 71/280 (25%), Gaps = 55/280 (19%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + G G K+ A +L L + + + I +++ +A + + L Sbjct: 24 LVGGYGSSKSYHTALKIL-LKLLKEKRTALVIREVFDTHRDSTFALFEEIIEELSLNRAV 82 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 S L + + + + P H + ++ +E S Sbjct: 83 TPLSSPL------------QLRFANGSRIMFKGM---DNPAKLKSVH--NISLIWIEECS 125 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-------------------- 241 K ++G + I T+N + W Y F Sbjct: 126 EVKYEGFKELIGRLRHPKLDLHMICTTNPVGTSNWTYRHFFRDERNKRYILDDQELYKKR 185 Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF----- 296 I D + + + + + D D+ RI G+F V Sbjct: 186 TIVSGDTYYHHSTALDNLFLPESYVKQLDGLKRYDPDLYRIARQGRFGVNGVRVLPQFEV 245 Query: 297 ------------IPHNYIEEAMSREAIDDLYAPLIMGCDI 324 I M + A + + D Sbjct: 246 LPHEQAEECIANISRPIFRTGMDFGFEESYNAVIRLAVDP 285 >gi|327409392|ref|YP_004301534.1| gp2 [Brochothrix phage BL3] gi|296245468|gb|ADH03081.1| gp2 [Brochothrix phage BL3] Length = 524 Score = 59.6 bits (142), Expect = 9e-07, Method: Composition-based stats. Identities = 34/264 (12%), Positives = 77/264 (29%), Gaps = 26/264 (9%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + GRG K+T A M+L L+ + +S + + L ++ ++ + + +L Sbjct: 30 RYVEKGGRGSAKSTHIA-MILILLMKKYAISALVVRKVGNTLSESVVEQLKEAVDILGME 88 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + L + + +I R + + ++ + Sbjct: 89 DEWHFSKSPLKAT------------YKPRGNSIYFRGADDPGKIKSIKIAKFPLTILWIE 136 Query: 199 E-ASGTPDIINKSILGFFTE----LNPNRFWIMTSNTRRLNGWF----YDIFNIPLEDWK 249 E A + I + ++ + N + + Y+ + + Sbjct: 137 ELAEFKLEEEIGVIEKSVLRAKLPPGLSYYFFNSYNPPKRKQSWVNKKYETKVALAPNTR 196 Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309 + + I F E Y + A E G+ N +P N + Sbjct: 197 VHHTTYKDNPHISDEFIEEAEHMYQTNPQKAAWEYGGEPI---GNGVVPFNNLVFRTITN 253 Query: 310 AIDDLYAPLIMGCDIAGEGGDKTV 333 ++ + G D G D Sbjct: 254 DEFKSFSNIRQGLDF-GYATDPVA 276 >gi|134298252|ref|YP_001111748.1| hypothetical protein Dred_0375 [Desulfotomaculum reducens MI-1] gi|134050952|gb|ABO48923.1| conserved hypothetical protein [Desulfotomaculum reducens MI-1] Length = 526 Score = 59.6 bits (142), Expect = 9e-07, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 65/235 (27%), Gaps = 28/235 (11%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 + + + N++ N IS R +G TT + LWL TR + + ++ + Sbjct: 40 ILNEQQDYFYQNMDKFN------IISKSRQLGFTTYSLAYCLWLACTRANTNCLIVSYNV 93 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177 +++ + + + +P ++ + +++ I Sbjct: 94 EST-QSIFERLKQMYASIPDKY-----------KPAEKRNNRIELLLENNSRIIV----- 136 Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF--TELNPNRFWIMTSNTRRLNG 235 + V E + PD + L N I+ T Sbjct: 137 -KTAGNKSLGRGMTLQYVLLSEFAFYPDDQQRDSLVSLEQALAKNNDSKIVIETTSNGYN 195 Query: 236 WFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290 ++ +F + + + S + L R G + Sbjct: 196 YYQKLFMSAYKG--NSKYKSFFFPWFSSAISKQFKHEIELAEKWFRANNKGHRME 248 >gi|268608995|ref|ZP_06142722.1| Phage terminase large subunit [Ruminococcus flavefaciens FD-1] Length = 421 Score = 59.2 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 30/276 (10%), Positives = 67/276 (24%), Gaps = 37/276 (13%) Query: 72 NSNPTIFKCAISAGRGIGKTT-LNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK 130 P + GKT ++ +LW + G + N+ + Sbjct: 17 CYAPDSYALICDGSVRSGKTAAMSCSFILWAMKCFNGENFGICGNT------------VQ 64 Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190 + +M ++ + Y + + + + ++ Sbjct: 65 AVERNIIAPLTQMTDITYYFRLKYVGGGRHRLTVTGAGRENYFYVFGGKDEASYKLVQGI 124 Query: 191 HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250 V DE + P+ + ++ + W N WFY + + ++ Sbjct: 125 TLAGVLFDEVALMPESFVNQAIARTLSVSGAKLWFS-CNPDSPAHWFYTNWILKAQEKNA 183 Query: 251 YQIDTR--TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH----NYIEE 304 +I R + S + + +LG + +I Sbjct: 184 LRIHFRMEDNPVMTPEKIRRTESTFSG--VFYQRYVLGDWV-VAEGLVYTMFDRAEHIFN 240 Query: 305 AMSREAIDDLYAPLI--------------MGCDIAG 326 A I DI+G Sbjct: 241 AGDLTVDPVAGDMFISIDYGTKNPTSMGLWYVDISG 276 >gi|290474254|ref|YP_003467131.1| Gp48 [Xenorhabdus bovienii SS-2004] gi|289173564|emb|CBJ80344.1| Gp48 [Xenorhabdus bovienii SS-2004] Length = 489 Score = 59.2 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 41/338 (12%), Positives = 81/338 (23%), Gaps = 88/338 (26%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + I R +G TT + L + IA++ K +V LP Sbjct: 48 RNIILKARQLGFTTEVCIIQL-DAALFESAKCALIAHTLNDAKRLFREKVKYAYDQLPD- 105 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + + + + ++ T H Sbjct: 106 --------EIKAANPASNDAAGELVFRKGGSLYVSTSFRG---GTLRYLH--------VS 146 Query: 199 EASGT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-------- 246 E P + + G F ++ + F + S G+F+D + Sbjct: 147 EFGKICAKFPHKAREIVTGAFEAVSTDCFTTIESTAEGRAGYFFDYCQTAEKAQLQGKQL 206 Query: 247 ---DWKRYQIDTRTVEGIDSGFHEGI---------------------------------- 269 DWK + E Sbjct: 207 SNLDWKFFFFSWWKNPQYAIDPVEAWPQRLVDYFAELSGKHGIQLNERQKAWYLAKEKTL 266 Query: 270 -----ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI 324 + S+ + + G + ++ E + D+ + P+ DI Sbjct: 267 GDDMKREYPSIPSEAFQQSVEGAYYAKQFRWLY-----ENKRIGKLPDNSHLPVHTFWDI 321 Query: 325 AGEGGDKTVVVFRRGNIIEHIF-DWSAKLIQETNQEGC 361 GD T + F + + ++ E + EG Sbjct: 322 GV--GDSTAIWF-----VREVGEEFHVIDYYENSGEGL 352 >gi|148727084|ref|YP_001285578.1| gp2 [Propionibacterium phage PA6] gi|91982908|gb|ABE68571.1| gp2 [Propionibacterium phage PA6] Length = 503 Score = 59.2 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 44/343 (12%), Positives = 96/343 (27%), Gaps = 45/343 (13%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 + P WQ + ++ + S C + R GK + + L+ + + Sbjct: 32 AYGLTPDPWQQQVLDDWLAVGSNGRLASGV----CGVFVPRQNGKNAILEIVELFKATIQ 87 Query: 106 PGMSIICIANSETQLKNTLWAE--VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163 G I+ A+ + + P + ++S+ L Sbjct: 88 -GRRILHTAHELKSARKAFMRLRSFFENERQFPDLYR-MVKSIRATNGQEAIVLHHPDCA 145 Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT-ELNPNR 222 K + E + + DEA D +++L + + + Sbjct: 146 TFEKKCGCSGWGSVEFVARSRGSARGFTVDDLVCDEAQELSDEQLEALLPTVSAAPSGDP 205 Query: 223 FWIMTSNTR------------------RLNGWFYDIFNIPLE--------DWKRYQIDTR 256 I + + F+IP E W++ DT Sbjct: 206 QQIFLGTPPGPLADGSVVLRLRGQALGGGKRFAWTEFSIPDESDPDDVSRQWRKLAGDTN 265 Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ-EVNNFIPHN-YIEEAMSREAIDDL 314 G F + + E LG + + + +P + + + A+ ++ Sbjct: 266 PALGRRLNFGTVSDEHESMSAAGFARERLGWWDRGQSAASVVPADKWAQSAVDEASLV-- 323 Query: 315 YAPLIMGCDIAGEGGDKTVVV----FRRGNIIEHIFDWSAKLI 353 + G + G D+ + G +E I S ++ Sbjct: 324 -GGKVFGVSFSRSG-DRVALAGAGKTDAGVHVEVIDGLSGTIV 364 >gi|308071887|emb|CBW54808.1| putative DNA maturase B [Pantoea phage LIMElight] Length = 614 Score = 59.2 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 39/289 (13%), Positives = 82/289 (28%), Gaps = 46/289 (15%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEA 61 PR I +D++ E + + E F++F G L Sbjct: 25 PRTIPSDKRTELAMMLAITFKE----FRDFAYVGM--RFLGFELTDMQA----------D 68 Query: 62 VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121 + + ++A RG K+TL A +W + ++ ++ E Q Sbjct: 69 IADYMQYGPRKKM-------VAAQRGEAKSTLAALYSVWRLIQDQRCRVLILSGGEQQAS 121 Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 V + + P W + S + + A + + K ++ C + Sbjct: 122 EVA-TLVIRLIETWPLLCWLKADSTRGDRTSYTAYDVHCDLKPLDKSPSVACIGVTA--- 177 Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS------NTRRLNG 235 + D+ T + + ++ ++ + I T T + Sbjct: 178 ----SLQGKRADLLIPDDIETTKNGMTQTEREKLLTVSKDFAAICTHGDTLYLGTPQTKD 233 Query: 236 WFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 Y +P ++ R + RYG E+ Sbjct: 234 SIYK--TLPARGFEVRVWPGRIPS-------LEMEERYGETLAPYIHEL 273 >gi|330858400|ref|YP_004414753.1| Gp2 [Propionibacterium phage PAD20] gi|260066518|gb|ACX30797.1| Gp2 [Propionibacterium phage PAD20] Length = 503 Score = 59.2 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 43/343 (12%), Positives = 93/343 (27%), Gaps = 45/343 (13%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 + P WQ + ++ + + R GK + + L+ + + Sbjct: 32 AYGLTPDPWQQQVLDDWLAV--GGNGRLASGVCGVFV--PRQNGKNAILEVVELFKATIQ 87 Query: 106 PGMSIICIANSETQLKNTLWAE--VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163 G I+ A+ + + P + ++S+ L Sbjct: 88 -GRRILHTAHELKSARKAFMRLRSFFENERQFPDLYR-MVKSIRATNGQEAIVLHHPDCA 145 Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT-ELNPNR 222 K E + + DEA D +++L + + + Sbjct: 146 TFEKKCGCPGWGSVEFVARSRGSARGFTVDDLVCDEAQELSDEQLEALLPTVSAAPSGDP 205 Query: 223 FWIMTSNTR------------------RLNGWFYDIFNIPLE--------DWKRYQIDTR 256 I + + F+IP E W++ DT Sbjct: 206 QQIFLGTPPGPLADGSVVLRLRGQALSGGKRFAWTEFSIPDESDPDDVSRQWRKLAGDTN 265 Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ-EVNNFIPHN-YIEEAMSREAIDDL 314 G F + + E LG + + + IP + + + A+ ++ Sbjct: 266 PALGRRLNFGTVSDEHESMSAAGFARERLGWWDRGQSATSVIPADKWAQSAVDEASLV-- 323 Query: 315 YAPLIMGCDIAGEGGDKTVVV----FRRGNIIEHIFDWSAKLI 353 + G + G D+ + G +E I S ++ Sbjct: 324 -GGKVFGVSFSRSG-DRVALAGAGRTDAGVHVEVIDGLSGTIV 364 >gi|226366383|ref|YP_002784166.1| phage terminase family protein [Rhodococcus opacus B4] gi|226244873|dbj|BAH55221.1| phage terminase family protein [Rhodococcus opacus B4] Length = 511 Score = 59.2 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 37/346 (10%), Positives = 95/346 (27%), Gaps = 35/346 (10%) Query: 4 LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63 T+ E L + + + + + + +Q+ ++++ Sbjct: 16 FDGTEPYCPLEWTPPLSPDAPSDGPRARALACKLFKQEN---GKYLELDDYQIRLIDSIL 72 Query: 64 VHCHSNVNNSNPT---IFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119 + + ++ AI + R GK+TL + ++ + + +I +A+++ Q Sbjct: 73 ELYPDDYEVEHLRGCLRYRQAIVSIPRRNGKSTLASVLVTYSMLLSVAPNIGVLASTKEQ 132 Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 K + + + F+ + S + + + + T+ Sbjct: 133 AKEVFDNTKYNFENNEALKKRFKTTNSKGLESRRTDKPAHFKIHAGNGDG-LQGITFVGN 191 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP----------NRFWIMT-- 227 P H T A D A +++ T Sbjct: 192 VPVVVDELHITKTEAY--DAAVKGASTCLSAVVIGITTAGTEDSELLKRLYKTGQAAIAG 249 Query: 228 ---SNTRRLNGWFYDIFNIPLEDWKRYQ------IDTRTVEGID-SGFHEGIISRYGLDS 277 +N R G+++ E + R ID + D Sbjct: 250 GEDANPR--FGFWHWTVAEGTELFDREALLRANPASQTNPPRIDIDQEILEGKANPAGDY 307 Query: 278 DVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323 R +F + ++ + +A + + ++ D Sbjct: 308 AEFRRYRRNEFI-HSEDIWLSLDVWAKANGKGIPEHYTGNVVYSID 352 >gi|182415227|ref|YP_001820293.1| hypothetical protein Oter_3416 [Opitutus terrae PB90-1] gi|177842441|gb|ACB76693.1| protein of unknown function DUF264 [Opitutus terrae PB90-1] Length = 521 Score = 59.2 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 38/300 (12%), Positives = 76/300 (25%), Gaps = 37/300 (12%) Query: 86 RGIGKTTLNAWM----MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 R IGK+T A +L + T + ++NS + V + L Sbjct: 54 RQIGKSTTLAGWAVDRLLKQLQTHDTWLVTVLSNSRANGGEFVLK-VHEVCRKLGQAFVE 112 Query: 142 EMQSLSLHPSGWYAELLEQSM-GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + +L +E + + + + G DE Sbjct: 113 DGNREALADDKTMSEDAKLELMRFEVRLQVGQKLGRIIVLAANPRTARGFSGDL-ILDEF 171 Query: 201 SG--TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID--TR 256 + I ++ + NP ++S FY + + R + + Sbjct: 172 AFHQDSRAIWEAAEPIIS-ANPEFLCRISSTGNGRRNMFYQLIAEGRIPYYRMRRSDAWK 230 Query: 257 TVEGIDSGFHE------GIISRYGLDSDVARIEILGQFPQQEVN---------------N 295 E D G+F + Sbjct: 231 RGEIRIYSVVTGEEITPDQARAEASDKRAYDQNYEGEFNDEASALLTQELISAAEREGIA 290 Query: 296 FIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTV--VVFRRGNIIEHIFDWSAKLI 353 + E + R L +G D+ + D +V V+ R G+ + + + Sbjct: 291 IEHQEWSEATIER-LRTKTIGDLFLGQDVGRK-RDFSVQTVIERIGSGYRVVAMLRMENM 348 >gi|282174047|ref|YP_003358149.1| ORF10 [Anguillid herpesvirus 1] gi|281314116|gb|ADA57773.1| ORF10 [Anguillid herpesvirus 1] Length = 787 Score = 59.2 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 49/163 (30%), Gaps = 9/163 (5%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GKTT+ A +L + + + I+ A S + K + ++ + WF Q Sbjct: 227 PRRCGKTTVVAI-VLAAMLSFLPIDIMVQAQSLSMSKEIHVK-MEGLMNKYKAKPWFPEQ 284 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + G T S + DEA+ Sbjct: 285 FKYIARKGCDKAYTYIFPPGAKPGKTTAHFLSSSHNA-----ARGQNPDICVVDEAAFVS 339 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247 + S+L T + S+ N W + ++ ED Sbjct: 340 PGMLVSVLPLMTVKGTKQIH--ISSPGAPNSWISQVGDVKRED 380 >gi|203288734|ref|YP_002223670.1| bsr protein [Borrelia duttonii Ly] gi|201084584|gb|ACH94162.1| bsr protein [Borrelia duttonii Ly] Length = 330 Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 50/163 (30%), Gaps = 11/163 (6%) Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 Y ++ F ++ ++ +EA+ K +L F I +N Sbjct: 25 LYGGDKVRDFERFRGSNSAVIYVNEATTLHKETLKEVLKRLRM--KPEFIIFDTNPDHPE 82 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294 +F + + Y T E I F + Y +LG++ Sbjct: 83 HYFKTDYIDNNTVYSTYNFTTYDNETISKEFIKTQEEIYKDLPTYKASVLLGEWVANNDA 142 Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE-GGDKTVVVF 336 F N IE+ + I D A GGD TV+ Sbjct: 143 IFRNINIIED--------YEFKSPIAYLDPAYSSGGDNTVLCV 177 >gi|302385792|ref|YP_003821614.1| phage terminase, large subunit, PBSX family [Clostridium saccharolyticum WM1] gi|302196420|gb|ADL03991.1| phage terminase, large subunit, PBSX family [Clostridium saccharolyticum WM1] Length = 428 Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 24/225 (10%), Positives = 58/225 (25%), Gaps = 38/225 (16%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 G G K+ A ++ + ++ + ++++ + + + + + Sbjct: 31 GGYGSSKSYHVAVKLIKKLLE-EKRKVLVVREVFDTIRDSCFDLLMEVSEAMGVSDYITF 89 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + + + I V+ +E S Sbjct: 90 TTSPM------------QVRFSNGSKIIFKGMDKPA-----KLKSLNGVSIVWIEECSEV 132 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE----------------- 246 K ILG + I+++N + W Y F Sbjct: 133 KYAGFKEILGRLRHPELSNHIILSTNPVSKSNWVYKHFFQDKSTGYKILNDEELYTRRIV 192 Query: 247 ---DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 + + + + E + D D+ RI G+F Sbjct: 193 VIGNTYYHHSTVDDNYFVPQEYVEQLDELQQHDPDLYRIARKGRF 237 >gi|148998991|ref|ZP_01826425.1| hypothetical protein CGSSp11BS70_06735 [Streptococcus pneumoniae SP11-BS70] gi|147755199|gb|EDK62252.1| hypothetical protein CGSSp11BS70_06735 [Streptococcus pneumoniae SP11-BS70] Length = 470 Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 38/299 (12%), Positives = 86/299 (28%), Gaps = 49/299 (16%) Query: 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 WQ+ + ++ + + + R GK+ L LW + G++I+ Sbjct: 43 WQVNLLTSIMAVDKNGLWVHQKFGYSI----PRRNGKSELLYLFELWGL--HNGLNILHT 96 Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173 A+ + + + +V ++L + + + S+ + Sbjct: 97 AHRISTSH-SSFEKVKRYLEKMGYVDGEDFSSIRAKGQ------ERIELFDGGGIVQFRT 149 Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR-- 231 RT + + DEA ++ T+ + IM Sbjct: 150 RTSNGGL--------GEGFDLLVIDEAQEYTTEQESALKYTVTDSSNPIT-IMCGTPPTP 200 Query: 232 ------------------RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE-GIISR 272 + + ++ + + +E I + Sbjct: 201 VSNGTVFTNYRKNCLFGKGKYSGWAEWSVSEEKEIDDVDAWYNSNPSMGYHLNERKIEAE 260 Query: 273 YGLDSDVARIEILGQFPQQEVNNFIP-HNYIEEAMSREAIDDLYAPLIMGCDIAGEGGD 330 G D ++ LG +P+ + I + E + ++I DL L +G G D Sbjct: 261 LGDDKLDHNVQRLGYWPEYNQKSAISETEWNELCV--DSIPDLSGKLFVGV---KYGQD 314 >gi|93007440|ref|YP_579204.1| terminase large subunit [Streptomyces phage mu1/6] gi|90568518|gb|ABD94197.1| terminase large subunit [Streptomyces phage mu1/6] Length = 448 Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 32/258 (12%), Positives = 70/258 (27%), Gaps = 18/258 (6%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 GRG GKT A M+ ++ P I + + + + + Sbjct: 57 LGGRGTGKTDGCARFMVSHVNGPPCDDRIPGGHRMS----IIAPTQGDAVESAVNGPSGL 112 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH-NTHGMAVFNDEAS 201 + + PD + V+ +EA+ Sbjct: 113 RAHDPR-----VVLRTTVGGTYARWPSGAEAKVFGAHTPDDVERLRSGGNRCLVWLEEAA 167 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI 261 + R + S T + ++ + D + TR + Sbjct: 168 AMRYLGPALAHSAMGLRIGPRPHYIASTTPKPRKEIVEL--LARPDVITTRGRTRDAHHL 225 Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMG 321 + ++++Y + R E+ G+ Q ++ R + +++ Sbjct: 226 PQMMRDKLVAQYAGT-RLERQELDGEVLQDVDGALWSWPLLDRL--RVGAPMPMSRIVVA 282 Query: 322 CDIAGEG---GDKTVVVF 336 D A D+T +V Sbjct: 283 IDPAVSNTAESDETGIVV 300 >gi|296535576|ref|ZP_06897757.1| terminase large subunit [Roseomonas cervicalis ATCC 49957] gi|296264092|gb|EFH10536.1| terminase large subunit [Roseomonas cervicalis ATCC 49957] Length = 571 Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 40/330 (12%), Positives = 79/330 (23%), Gaps = 43/330 (13%) Query: 40 IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS-AGRGIGKTTLNAWMM 98 IKG H + WQ + F+ A+ RG GKTT A + Sbjct: 75 IKGPEAGHPLRLMSWQRFVFANLFGFVERGTTTR---RFRQAVVYVPRGNGKTTFAAPIA 131 Query: 99 LW--LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF-----EMQSLSLHPS 151 L+ I G A + Q + L+ + + P ++ + Sbjct: 132 LYLTFIEGEGGAEGYAAAVTRDQAR-ILFDAAQQMVRRSPKFRQAFGVAERANAIYQEQT 190 Query: 152 GWYAELLEQSMGIDSKHYTITC--------RTYSEERPDTFVGPHNTHGMAVFNDEA--- 200 + RT H + + A Sbjct: 191 ASRFVPVSSDAKSLDGLNVAVAVCDELASHRTAQVYDVLLTAMGKRRHPLLLSISTATGN 250 Query: 201 -SGTPDIINKSILGFFTE-LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 SG + + R + + + + ++ + + Sbjct: 251 TSGIGRQMWDYAVRVLIGLKQDERLFALVYTVDDEDDPW--------DEASWIKANPSWG 302 Query: 259 EGIDSGFHEGIISRYGLDS---DVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD-- 313 + + I+ + + A+ L + + + D Sbjct: 303 QAVQPDAIRAIMRQARNNPAQEAAAKTRHLNVWV-GADEALFSTRAWKACVDPGLTLDAL 361 Query: 314 LYAPLIMGCDIAGEGGDKTVVVF---RRGN 340 + D+A D T + RRG Sbjct: 362 AGQECHVAVDLAAT-TDLTALALVFPRRGP 390 >gi|302389564|ref|YP_003825385.1| hypothetical protein Toce_1000 [Thermosediminibacter oceani DSM 16646] gi|302200192|gb|ADL07762.1| conserved hypothetical protein [Thermosediminibacter oceani DSM 16646] Length = 527 Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 26/253 (10%), Positives = 70/253 (27%), Gaps = 34/253 (13%) Query: 49 SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKC--------AISAGRGIGKTTLNAWMMLW 100 + W F++ VD N + + R +G TT + LW Sbjct: 15 NDFRLWCKNFVKMVDNKGQEVPFILNEQQLRLLEGLEKYNIVLKSRQLGITTFSIAYCLW 74 Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 L+ +P ++ + ++ + ++ + + S+ + Sbjct: 75 LVCNKPNITTMILSYNLESTQHIFERLKAMYY------------SIPDQYKPKIKRDNKM 122 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF--TEL 218 + +++ I + + + E + D + L + Sbjct: 123 ELFLENGSRVIV------KIAGNKELGRSFTCEYIHCSEFAFWTDYAQEKGLLGLENSLA 176 Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLE---DWKRYQIDTRTVE---GIDSGFHEGIISR 272 I+ +T FY+I+ + +K + + + + E Sbjct: 177 KNPDSKIILESTANGLNEFYNIYRKASKGESKYKAFFFNWFENKELFREEYKLAEEWWKA 236 Query: 273 YGLDSDVARIEIL 285 +R ++ Sbjct: 237 QNHGQRFSRKDLE 249 >gi|266623782|ref|ZP_06116717.1| terminase, large subunit [Clostridium hathewayi DSM 13479] gi|288864419|gb|EFC96717.1| terminase, large subunit [Clostridium hathewayi DSM 13479] Length = 440 Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 26/245 (10%), Positives = 67/245 (27%), Gaps = 19/245 (7%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 GRG K++ + ++ LI M + + L+ +++ ++ + L F Sbjct: 167 PGGRGSTKSSFISLEVIDLIMNNDQMHAVVMRQVADTLRGSVYQQILWAIEALELSEEFH 226 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-S 201 + + S I R + + + ++ +E Sbjct: 227 ATVSPM------------EITRISTGQKIYFRGADDPGKVKSIKVPFGYIGILWLEELDQ 274 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRL-NGWFYDIFNIPLEDWKRYQIDTRTVE- 259 + I + + N + + W +P + V Sbjct: 275 FVGPESVRKIEQSVIRGGEVAYIFKSFNPPKTASNWANKYIKVPKASRLVTESTYLDVPP 334 Query: 260 -GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318 + F + ++ D E +G + + I + + + + Sbjct: 335 KWLGKPFLDEAEFLKEVNPDAYDNEYMGV-ANGSGGSVFDNVTIRK--ITDEEIAQFDHV 391 Query: 319 IMGCD 323 + G D Sbjct: 392 LNGVD 396 >gi|319646329|ref|ZP_08000559.1| phage terminase [Bacillus sp. BT1B_CT2] gi|317392079|gb|EFV72876.1| phage terminase [Bacillus sp. BT1B_CT2] Length = 425 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 28/227 (12%), Positives = 64/227 (28%), Gaps = 38/227 (16%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + G G K+ A ++ + + + + +++ ++ + + ++ L H Sbjct: 24 LVGGYGSSKSYHVALKLILKMLQ-EKRTALVVREVYDTHRDSTFSLLEEIITDLGLDHKI 82 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 S + + + I ++P + V+ +E S Sbjct: 83 RCVSSPM------------QIRFPNGSKIIFKGM---DKPAKLKSI--NNVSIVWVEECS 125 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-------------------- 241 K +LG I+++N W Y F Sbjct: 126 EVKYDGFKELLGRLRHPTLKLHMILSTNPVSKGNWSYKHFFKDEANQFFVLDDDELYKKK 185 Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 I + + + + E + D D+ RI G+F Sbjct: 186 TIIKNNTYYHHSTADDNLFLPESYIEQLEDLKSHDPDLYRIARKGRF 232 >gi|52785229|ref|YP_091058.1| hypothetical protein BLi01464 [Bacillus licheniformis ATCC 14580] gi|52347731|gb|AAU40365.1| putative protein [Bacillus licheniformis ATCC 14580] Length = 425 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 28/227 (12%), Positives = 64/227 (28%), Gaps = 38/227 (16%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + G G K+ A ++ + + + + +++ ++ + + ++ L H Sbjct: 24 LVGGYGSSKSYHVALKLILKMLQ-EKRTALVVREVYDTHRDSTFSLLEEIITDLGLDHKI 82 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 S + + + I ++P + V+ +E S Sbjct: 83 RCVSSPM------------QIRFPNGSKIIFKGM---DKPAKLKSI--NNVSIVWVEECS 125 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-------------------- 241 K +LG I+++N W Y F Sbjct: 126 EVKYDGFKELLGRLRHPTLKLHMILSTNPVSKGNWSYKHFFKDEANQFFVLDDDELYKKK 185 Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 I + + + + E + D D+ RI G+F Sbjct: 186 TIIKNNTYYHHSTADDNLFLPESYIEQLEDLKSHDPDLYRIARKGRF 232 >gi|52079856|ref|YP_078647.1| Phage terminase, large subunit [Bacillus licheniformis ATCC 14580] gi|52003067|gb|AAU23009.1| Phage terminase, large subunit [Bacillus licheniformis ATCC 14580] Length = 424 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 28/227 (12%), Positives = 64/227 (28%), Gaps = 38/227 (16%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + G G K+ A ++ + + + + +++ ++ + + ++ L H Sbjct: 23 LVGGYGSSKSYHVALKLILKMLQ-EKRTALVVREVYDTHRDSTFSLLEEIITDLGLDHKI 81 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 S + + + I ++P + V+ +E S Sbjct: 82 RCVSSPM------------QIRFPNGSKIIFKGM---DKPAKLKSI--NNVSIVWVEECS 124 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-------------------- 241 K +LG I+++N W Y F Sbjct: 125 EVKYDGFKELLGRLRHPTLKLHMILSTNPVSKGNWSYKHFFKDEANQFFVLDDDELYKKK 184 Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 I + + + + E + D D+ RI G+F Sbjct: 185 TIIKNNTYYHHSTADDNLFLPESYIEQLEDLKSHDPDLYRIARKGRF 231 >gi|225857863|ref|YP_002739373.1| putative phage terminase, large subunit [Streptococcus pneumoniae 70585] gi|303255462|ref|ZP_07341526.1| Phage terminase [Streptococcus pneumoniae BS455] gi|303259344|ref|ZP_07345322.1| Phage terminase [Streptococcus pneumoniae SP-BS293] gi|303261101|ref|ZP_07347050.1| Phage terminase [Streptococcus pneumoniae SP14-BS292] gi|303263429|ref|ZP_07349352.1| Phage terminase [Streptococcus pneumoniae BS397] gi|303265593|ref|ZP_07351493.1| Phage terminase [Streptococcus pneumoniae BS457] gi|303267848|ref|ZP_07353650.1| Phage terminase [Streptococcus pneumoniae BS458] gi|225721021|gb|ACO16875.1| putative phage terminase, large subunit [Streptococcus pneumoniae 70585] gi|302597602|gb|EFL64684.1| Phage terminase [Streptococcus pneumoniae BS455] gi|302637938|gb|EFL68424.1| Phage terminase [Streptococcus pneumoniae SP14-BS292] gi|302639762|gb|EFL70219.1| Phage terminase [Streptococcus pneumoniae SP-BS293] gi|302642544|gb|EFL72889.1| Phage terminase [Streptococcus pneumoniae BS458] gi|302645033|gb|EFL75280.1| Phage terminase [Streptococcus pneumoniae BS457] gi|302647202|gb|EFL77426.1| Phage terminase [Streptococcus pneumoniae BS397] Length = 470 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 37/299 (12%), Positives = 86/299 (28%), Gaps = 49/299 (16%) Query: 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 WQ+ + ++ + + + R GK+ L LW + G++I+ Sbjct: 43 WQVNLLTSIMAVDKNGLWVHQKFGYSI----PRRNGKSELLYLFELWGL--HNGLNILHT 96 Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173 A+ + + + +V ++L + + + S+ + Sbjct: 97 AHRISTSH-SSFEKVKRYLEKMGYVDGEDFSSIRAKGQ------ERIELFDGGGIVQFRT 149 Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR-- 231 RT + + DEA ++ T+ + IM Sbjct: 150 RTSNGGL--------GEGFDLLVIDEAQEYTTEQESALKYTVTDSSNPIT-IMCGTPPTP 200 Query: 232 ------------------RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE-GIISR 272 + + ++ + + +E I + Sbjct: 201 VSNGTVFTNYRKNCLFGKGKYSGWAEWSVSEEKEIDDVDAWYNSNPSMGYHLNERKIEAE 260 Query: 273 YGLDSDVARIEILGQFPQQEVNNFIP-HNYIEEAMSREAIDDLYAPLIMGCDIAGEGGD 330 G D ++ LG +P+ + I + E + +++ DL L +G G D Sbjct: 261 LGDDKLDHNVQRLGYWPEYNQKSAISETEWNELCV--DSMPDLSGKLFVGV---KYGQD 314 >gi|21910482|ref|NP_664750.1| hypothetical protein SpyM3_0946 [Streptococcus pyogenes MGAS315] gi|28876230|ref|NP_795461.1| hypothetical protein SpyM3_0946 [Streptococcus pyogenes phage 315.2] gi|28895821|ref|NP_802171.1| hypothetical protein SPs0909 [Streptococcus pyogenes SSI-1] gi|21904681|gb|AAM79553.1| conserved hypothetical protein - phage-associated [Streptococcus pyogenes MGAS315] gi|28811070|dbj|BAC64004.1| hypothetical protein [Streptococcus pyogenes SSI-1] Length = 584 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 52/357 (14%), Positives = 101/357 (28%), Gaps = 36/357 (10%) Query: 3 RLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAV 62 R ++ ++++ E + + E NF+ P GKP +Q + + Sbjct: 42 RHLNDLKRIDDEDFKFVYLPEKAADPINFIE-ILPDVKTGKPYPLAM----FQKFIIGNL 96 Query: 63 DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW-LISTRPGM---SIICIANSET 118 ++S K IS R GKT L A ++L+ + + C AN T Sbjct: 97 Y-GWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEFLFGHNPSMSRQLFCTANDRT 155 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 Q K W K LS L + ++ + E + S+ Sbjct: 156 QAK-IAWDMAKKQLSSLRAKDVDVRKATKIVRDELKNLHDESYIRALSRDTGAVDGFEPY 214 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR------- 231 T+ M + G D I+ ++ N Sbjct: 215 VGVLDEFAASKTNEMLELLESGQGQLDNPFILIIST-AGMDLNVPMHTIEYPYITKILDG 273 Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI--------- 282 + Y + ++ + + ++ ++ E + + R Sbjct: 274 EITDEGYFGYVAEQDNEEEIKDESNWIKSNPILEVEALHDKLMDYLRTRRRVSLETGEIN 333 Query: 283 ----EILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIM-GCDIAGEGGDKTVV 334 + + Q ++I E A D Y + G D+ D + Sbjct: 334 KVLIKNFNMWRQSSEESYIDKQSWELAQI--DKPDTYKRRVWLGVDVGRV-SDLFAI 387 >gi|326564856|gb|EGE15062.1| phage terminase large subunit [Moraxella catarrhalis 103P14B1] Length = 490 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 44/332 (13%), Positives = 84/332 (25%), Gaps = 77/332 (23%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + I R +G TT M L IA++ K +V LP Sbjct: 44 RNIILKARQLGFTTQVCIMQLDSAL-FESQKCALIAHTLHDAKRLFREKVKFAYEHLPDL 102 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + + ++ M ++ ++ T H Sbjct: 103 ---------IKLANPIKIETKEEMVFENGGSVTVSTSFRG---GTLQRLH--------VS 142 Query: 199 EASGT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-------- 246 E PD + + G F ++ + S G+FY+ I + Sbjct: 143 EFGKICAKYPDKAREIVTGAFEAVSLGGIVTLESTAEGRQGYFYEFSQIAEKLHLSKKTL 202 Query: 247 ---DWKRYQIDTRTVEG--IDSGFHEGIISRY------------GLDSDVARI---EILG 286 DW+ + + + + + Y + LG Sbjct: 203 TAQDWRFFFFAWWQNKEYAMTTEPISERLQAYFDSLKAKHGIQLSDEQKAWYQAKERTLG 262 Query: 287 Q-------------FPQQEVNNFIP--HNYIEEAMSREAIDD-LYAPLIMGCDIAGEGGD 330 F Q + Y+ + + D + P+ D+ D Sbjct: 263 DDMKREYPSLPSEAFEQSIEGAYYAKQFAYLYANSRIDKLPDNEHLPIDTYWDLGV--SD 320 Query: 331 KTVVVFRRGNIIEHI-FDWSAKLIQETNQEGC 361 T + F I + ++ E + EG Sbjct: 321 STTIWF-----IRQVGDEFHIVDYYENSGEGL 347 >gi|169343347|ref|ZP_02864353.1| phage terminase, large subunit, pbsx family [Clostridium perfringens C str. JGS1495] gi|169298524|gb|EDS80608.1| phage terminase, large subunit, pbsx family [Clostridium perfringens C str. JGS1495] Length = 415 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 34/264 (12%), Positives = 80/264 (30%), Gaps = 22/264 (8%) Query: 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136 ++ + GRG K+T A +++ + P + + + K++ + ++ + L Sbjct: 28 RYRV-VKGGRGSKKSTTTAMWIIYNMMKYPLANTLVLRRVFNTHKDSTYTQLKWAANNLG 86 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 H + L + I R + T + + + Sbjct: 87 VSHLWHFSKSPL------------EITYKPTGQKILFRGLDDPMSITSITVEIGYLCWAW 134 Query: 197 NDEASGTPDI-----INKSILGFFTELNPNRFWIMTSNTRRLNGWF-YDIFNIPLEDWKR 250 +EA + ++ SI G + + N W F+ ++ Sbjct: 135 FEEAFQVMNEDDFNKVDMSIRGELPMGYFKQITLSF-NPWSEKHWLKKRFFDTKDDNILA 193 Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310 + + E + + S + +IE LG++ + + +E + +E Sbjct: 194 LTTNYKCNEFLGDDDRKLFESMKENNPRRYKIEGLGEWGIADGLVYENFTELEFDV-KEI 252 Query: 311 IDDLYAPLIMGCDIAGEGGDKTVV 334 + G D D T Sbjct: 253 SKRKGIISVFGLDFGYT-NDPTAF 275 >gi|326775607|ref|ZP_08234872.1| phage terminase, large subunit, PBSX family [Streptomyces cf. griseus XylebKG-1] gi|326655940|gb|EGE40786.1| phage terminase, large subunit, PBSX family [Streptomyces cf. griseus XylebKG-1] Length = 416 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 27/249 (10%), Positives = 70/249 (28%), Gaps = 26/249 (10%) Query: 79 KCAISAGR-GIGKT-TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136 + I++G GKT + ++++ + G + IA + + ++ + P Sbjct: 23 RINIASGSIRAGKTISTLLRWIMYVATAPSGGELAVIAKTTNTAASNVFIPLQDPNLFGP 82 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 + + ++ R Sbjct: 83 LAQHVHYTRGAPTATILGRQV----------------RVIGANDSRAEERLRGMTCAGAL 126 Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED--WKRYQID 254 DEA+ P +LG + ++N W F ++ + + Sbjct: 127 VDEATLVPQEFWTQLLGRMSVPGAKL--FASTNPGSPAHWLKRDFIDRRDELGIRYWHYV 184 Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314 + + I + + R +LG++ + + EE + + ++ Sbjct: 185 LDDNPSLGDDYKNSIKNEFVG--LWYRRFVLGEWI-AAEGSIFDM-WDEEKHVVDTLPEI 240 Query: 315 YAPLIMGCD 323 + +G D Sbjct: 241 AKWISVGVD 249 >gi|110634235|ref|YP_674443.1| phage terminase [Mesorhizobium sp. BNC1] gi|110285219|gb|ABG63278.1| phage Terminase [Chelativorans sp. BNC1] Length = 561 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 41/328 (12%), Positives = 83/328 (25%), Gaps = 44/328 (13%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR---PGM 108 WQ E + + C + N I GRG KT+L A + L PG Sbjct: 60 DPWQEEIVRVIYGPCDEHGNRIVSD---VVILIGRGNRKTSLGAALSLLHTHGPEAVPGG 116 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 I A + Q + ++ ++ + + Sbjct: 117 EAIFAAGDKKQAR------IAYQEALGILHAGDADLWKKGQANRATDPTKTIRIQDYRNT 170 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP-DIINKSILGFFTELNPNRFWIMT 227 ++ E + H DE + I T+ + +T Sbjct: 171 IQFPNGSFLEAISNDHGTQHGRTPAFALCDELHAWARRDLWDVIDTGLTKTANSLRVTIT 230 Query: 228 SNTRRLNGWFYDIFNIPLE----------------------DWKRYQIDTRTVEGIDSGF 265 + R + +++ + DW+ + GI G+ Sbjct: 231 TAGRGQDTIGHEVIERARKIARGKIIEPSTLAFLFEVPAEADWRDESLWPLANPGIPHGY 290 Query: 266 --------HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYA 316 + D ++ L + + + F+ + + Sbjct: 291 PPLDKLRQKARVAEDSPGARDAFKMLHLNMWLDRSTSPFVEMSIYDRGNKPINVEALAGL 350 Query: 317 PLIMGCDIAGEGGDKTVVVFRRGNIIEH 344 P +G D+ VV R ++ Sbjct: 351 PCWIGVDLGMTDDLSAVVAAFRDPDLDE 378 >gi|134295281|ref|YP_001119016.1| hypothetical protein Bcep1808_1170 [Burkholderia vietnamiensis G4] gi|134138438|gb|ABO54181.1| protein of unknown function DUF264 [Burkholderia vietnamiensis G4] Length = 458 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 34/304 (11%), Positives = 72/304 (23%), Gaps = 39/304 (12%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + + G GKT L + PG + Sbjct: 4 KLTPRQEQAQQVLAGPAKNLMLFGGSRSGKTFLLCRNIAMRAIKAPGSRHGIFRFRALHV 63 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 ++ + W M+ G +ER Sbjct: 64 HESIV--LDTWPKMMKLAF-----PGVRWTMHKGDGYASIHTGGAEDSEVWFGGLDDKER 116 Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKS-----ILGFFTELNPNRFWIMT------SN 229 + ++ +E+S P + T + + N Sbjct: 117 VEK---ILGKEFATLYFNESSQIPMASVDTALTRLAQKVMTNIEGREPAPLKVRALFDCN 173 Query: 230 TRRLNGWFYDIFNIPLE-----------DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278 W Y F + ++ D+ +QI+ S + + G+ Sbjct: 174 PPSKAHWTYKRFVLKVDPETGDPLPNPGDYAHFQINPGDNAQNLSADYLDTLK--GMSPR 231 Query: 279 VARIEILGQFPQQEVNNFIPHNYIEE-AMSREAIDDLYAPLIMGCDIAGEGG----DKTV 333 + + + G+F N IE+ + + +++ D +G G D Sbjct: 232 LQKRFLRGEFSDATPNQLFAEETIEKWRHGTDQPLPDFVRVVVAVDPSGSGDVDNADNDA 291 Query: 334 VVFR 337 + Sbjct: 292 IGII 295 >gi|256422889|ref|YP_003123542.1| hypothetical protein Cpin_3879 [Chitinophaga pinensis DSM 2588] gi|256037797|gb|ACU61341.1| hypothetical protein Cpin_3879 [Chitinophaga pinensis DSM 2588] Length = 471 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 35/280 (12%), Positives = 79/280 (28%), Gaps = 24/280 (8%) Query: 90 KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLH 149 K+ ++ PG +L+ + + K Sbjct: 62 KSWTGCVWLVMACLAYPGTRWFIGREELKRLRASTYQTFLKVCKAYGVN----------K 111 Query: 150 PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209 + W + + + R + + + +E Sbjct: 112 DNHWDYNGQDHFIQFHNGSRIDMLDLKFVPRDPYYERYGSVEYTGGWIEEGGEVNFGAYD 171 Query: 210 SILGFFTELNPNRF-----WIMTSNTRRL--NGWFYDIFNIPL--EDWKRYQIDTRTVEG 260 ++ +++ +T N ++ + F+ F + K Q + Sbjct: 172 TLKSRVGRHLNDKYGLLGRIFVTLNPKKNWCHTVFWKPFKAGQLPDKVKFLQALVQDNPF 231 Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQF-PQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319 ID G+ + ++S D + + G F + N + ++ I + + I Sbjct: 232 IDPGYIDNLMSIT--DKVKKQRLLYGNFDYDDDDNALMEYDSIND-IFTNEFVVEGKKYI 288 Query: 320 MGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359 DIA G DK+VV+ G + I + + E Sbjct: 289 TA-DIARFGSDKSVVMVWNGLRVVEIRKFEKMRTTKVADE 327 >gi|307126229|ref|YP_003878260.1| phage terminase large subunit [Streptococcus pneumoniae 670-6B] gi|306483291|gb|ADM90160.1| phage terminase, large subunit, putative [Streptococcus pneumoniae 670-6B] gi|321157162|emb|CBW39147.1| Phage terminase [Streptococcus phage 11865] Length = 470 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 37/299 (12%), Positives = 85/299 (28%), Gaps = 49/299 (16%) Query: 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 WQ+ + ++ + + R GK+ L LW + G++I+ Sbjct: 43 WQINLLTSIMAVDKDGLWVHQKFGYSI----PRRNGKSELLYLFELWGL--HNGLNILHT 96 Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173 A+ + + + +V ++L + + S+ + Sbjct: 97 AHRISTSH-SSFEKVKRYLEKMGYVDGEHFSSIRAKGQ------ERIELFDGGGIVQFRT 149 Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR-- 231 RT + + DEA ++ T+ + IM Sbjct: 150 RTSNGGL--------GEGFDLLVIDEAQEYTTEQESALKYTVTDSSNPIT-IMCGTPPTP 200 Query: 232 ------------------RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE-GIISR 272 + + ++ + + + +E I + Sbjct: 201 VSNGTVFTNYRKTCLFGKGKYSGWAEWSVSEEKEIDDVEAWYNSNPSMGYHLNERKIEAE 260 Query: 273 YGLDSDVARIEILGQFPQQEVNNFIP-HNYIEEAMSREAIDDLYAPLIMGCDIAGEGGD 330 G D ++ LG +P+ + I + E + +++ DL L +G G D Sbjct: 261 LGDDKLDHNVQRLGYWPEYNQKSAISETEWNELCV--DSMPDLSGKLFVGV---KYGQD 314 >gi|134299975|ref|YP_001113471.1| hypothetical protein Dred_2129 [Desulfotomaculum reducens MI-1] gi|134052675|gb|ABO50646.1| conserved hypothetical protein [Desulfotomaculum reducens MI-1] Length = 527 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 65/235 (27%), Gaps = 28/235 (11%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 + + + N++ N IS R +G TT + LWL TR + + ++ + Sbjct: 41 ILNEQQDYFYQNMDKFN------IISKSRQLGFTTYSLAYCLWLACTRANTNCLIVSYNV 94 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177 +++ + + + +P ++ + +++ I Sbjct: 95 EST-QSIFERLKQMYASIPDKY-----------KPAEKRNNRMELLLENNSRIIV----- 137 Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF--TELNPNRFWIMTSNTRRLNG 235 + V E + PD + L N I+ T Sbjct: 138 -KTAGNKSLGRGMTLQYVLLSEFAFYPDDQQRDSLVSLEQALAKNNDSKIVIETTSNGYN 196 Query: 236 WFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290 ++ +F + + + S + L R G + Sbjct: 197 YYQKLFMSAYKG--NSKYKSFFFPWFSSATSKQFKHEIELAEKWFRANNKGHRME 249 >gi|308097723|gb|ADO14402.1| AB1gp31 [Acinetobacter phage AB1] Length = 313 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 3/122 (2%) Query: 233 LNGWFYDIFN-IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291 ++ + + F P + I+ + + I + D + G Sbjct: 1 MSDFVWQNFVVDPPANTLIRHINYNENPFLSQTALDVIADKKRRDPEGFAHIYDGMPRAD 60 Query: 292 EVNNFIPHNYIEEAMSRE--AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS 349 + + I +++E A+ D +G D+A G DK +V R+G + +W Sbjct: 61 DDMSIIKASWVEAALDAHKLLNLDDTGRSYLGFDVADAGKDKCALVHRKGIVAYWSDEWK 120 Query: 350 AK 351 A+ Sbjct: 121 AR 122 >gi|294010834|ref|YP_003544294.1| hypothetical protein SJA_C1-08480 [Sphingobium japonicum UT26S] gi|292674164|dbj|BAI95682.1| phage-related protein [Sphingobium japonicum UT26S] Length = 419 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 34/274 (12%), Positives = 74/274 (27%), Gaps = 29/274 (10%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 I R GK+ + + G + + + + T +++LW + W+ H Sbjct: 8 LLIYGNRRGGKSIAILYYIFMRCLLYAGSTHLIVRRTRTACESSLWRQTLNWM----LDH 63 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + L + D+ Y + + + T ++ +E Sbjct: 64 MADPSGAPLREKVKLNSSDLIAY-FDNGSYIM----FDGLDENRLDKVLGTEYQTIWMNE 118 Query: 200 ASGTPDIINKSILGFFTELNPN--------RFWIMTSNTRRLNGWFYDIFNIPLEDWKRY 251 S + + G + R + N R + W +F Sbjct: 119 VSEFDWSDVQQLAGCLNGSPTHNDNGLPIVRKMVFDCNPRFESDWDCKVFRDGQNPVNNQ 178 Query: 252 ------QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA 305 + V+ +D + D + G + Q N + E Sbjct: 179 PLNDVQKYGKVKVQNVDEEYL---AIYANADPRTRARYLDGDWSAQNDNAIFDLDNFERN 235 Query: 306 MSREAIDDLYAPLIMGCDIAGEG---GDKTVVVF 336 +++G D A + D T ++ Sbjct: 236 RRFGIFAKDLERIVIGVDPASKSKKESDLTGIIV 269 >gi|187935777|ref|YP_001886932.1| phage terminase, large subunit, pbsx family [Clostridium botulinum B str. Eklund 17B] gi|187723930|gb|ACD25151.1| phage terminase, large subunit, pbsx family [Clostridium botulinum B str. Eklund 17B] Length = 450 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 26/261 (9%), Positives = 75/261 (28%), Gaps = 40/261 (15%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 ++ ++ H + N + + G G K+ A+ ++ + + + + Sbjct: 1 MDIEREINPHFEDYIFNWDYKFYFLV--GGYGSSKSYNTAFKLILKLLE-EKRTALVVRE 57 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 ++++ ++ + + ++ + + ++ + + + I Sbjct: 58 VYDTMRDSCYSLLEEIITEMELDDTIQCKTSPM------------QIRFPNGSKIIFKGM 105 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 ++P + V+ +E S K +LG I+T+N + Sbjct: 106 ---DKPAKLKSI--NNVSIVWIEECSEVKYEGFKELLGRLRHPTLKLHMILTTNPVSKSN 160 Query: 236 WFYDIF--------------------NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275 W Y F + + + + + + Sbjct: 161 WCYKYFFIDKKKKLFVLDDKDLYKKRIVIKNNTYYHHSLADDNYFLPKSYILQLDDLKTH 220 Query: 276 DSDVARIEILGQFPQQEVNNF 296 D D+ R+ GQF Sbjct: 221 DKDLWRVARKGQFGTNGKKVL 241 >gi|313885555|ref|ZP_07819305.1| putative phage terminase, large subunit [Eremococcus coleocola ACS-139-V-Col8] gi|312619285|gb|EFR30724.1| putative phage terminase, large subunit [Eremococcus coleocola ACS-139-V-Col8] Length = 470 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 29/273 (10%), Positives = 66/273 (24%), Gaps = 43/273 (15%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ + ++ + + + R GKT + + +W + G++I+ Sbjct: 42 EWQEQLLKPIMAIDEEGLWQHQKFGYSI----PRRNGKTEIVYILEIWALEH--GLNILH 95 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 A+ + + + ++ K+ + S + Sbjct: 96 TAHRISTSH-SSFEKMKKYFESMG------YVEGEDFASIKAKGQERIELLKTDGIIQFR 148 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232 RT S + DEA ++ ++ + +M Sbjct: 149 TRTSSGGL--------GEGFDLLVIDEAQEYTIEQESALKYTVSDSSNPMT-VMCGTPPT 199 Query: 233 L---------------------NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271 +GW + I + Sbjct: 200 PVSSGTVFTDYRKKVLFGQSKYSGWAEWSVTEMTDIHDVEAWYECNPSMGYHLNERKIEA 259 Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE 304 G D ++ LG +P + I +E Sbjct: 260 ELGEDKLDHNVQRLGYWPTYNQKSAISETEWKE 292 >gi|307710012|ref|ZP_07646457.1| phage Terminase family protein [Streptococcus mitis SK564] gi|307619197|gb|EFN98328.1| phage Terminase family protein [Streptococcus mitis SK564] Length = 470 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 37/300 (12%), Positives = 83/300 (27%), Gaps = 47/300 (15%) Query: 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 WQ + + + + + R GK+ + + +W + G++I+ Sbjct: 43 WQKNLLLPMMAVDKNGLWVHQKFGYSI----PRRNGKSEILYILEIWGL--HKGLNILHT 96 Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173 A+ + + + +V ++L + + + S+ + Sbjct: 97 AHRISTSH-SSFEKVKRYLEKMGYVDGEDFNSIRAKGQ------ERIELYSTGGVIQFRT 149 Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233 RT + + DEA ++ T+ IM Sbjct: 150 RTSNGGL--------GEGFDMLIIDEAQEYTTEQESALKYTVTDSENPIT-IMCGTPPTP 200 Query: 234 NGW--------------------FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE-GIISR 272 + + ++ + + + +E I + Sbjct: 201 VSSGTVFTKYRETCLFGKGKYSGWAEWSVSDEKEIDDVEAWYNSNPSMGYHLNERKIEAE 260 Query: 273 YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKT 332 G D I+ LG +P + I E + + I +L L +G G D T Sbjct: 261 LGEDKLDHNIQRLGFWPTYNQKSAISETEWNE-LKVDDIPELSGKLSVGI---KYGQDGT 316 >gi|282933181|ref|ZP_06338568.1| putative phage terminase, large subunit [Lactobacillus jensenii 208-1] gi|281302685|gb|EFA94900.1| putative phage terminase, large subunit [Lactobacillus jensenii 208-1] Length = 571 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 47/307 (15%), Positives = 97/307 (31%), Gaps = 61/307 (19%) Query: 69 NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP----GMSIICIANSETQLKNTL 124 ++ + K IS R GKT L A + L+++ + G I C AN Q K Sbjct: 89 RKSDPHRKFKKMFISMARKNGKTILVAGIALYILLYQKYPVRGKQIYCAANKRDQAK-VA 147 Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP--D 182 + ++ +L L + F + + + +T S +P + Sbjct: 148 FNYINNFLVPLRNDSPFVKRKTQMK-----------------RDEITDAKTGSFIKPLSN 190 Query: 183 TFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN-TRRLNGWFYD-- 239 G + DE + + DI + + + + ++ S + +NGWF++ Sbjct: 191 DKNGIQGLNTTLAIFDEQADSNDITVYDAVEKSSRMQKDPLMLLISTVSPNINGWFHEMI 250 Query: 240 --------------------IFNIPLEDWKRYQIDT-RTVEGIDSGFHEGII-------- 270 + ED + ++ + + Sbjct: 251 YQYVEQMVKGDVVDDETMVLWYEQESEDEIADTANWIKSNPILYDKDIRETLLPTLIQDW 310 Query: 271 --SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD-LYAPLIMGCDIAGE 327 ++ A+I + Q N++I + + D + +G D+A Sbjct: 311 KTAQAMGRETKAKIYNFNMWQQANENSYIKVQDW-ANIKVDKTPDLYGREVYIGMDLART 369 Query: 328 GGDKTVV 334 G D + V Sbjct: 370 G-DLSAV 375 >gi|265756326|ref|ZP_06090655.1| PBSX family phage terminase, large subunit [Bacteroides sp. 3_1_33FAA] gi|263233917|gb|EEZ19526.1| PBSX family phage terminase, large subunit [Bacteroides sp. 3_1_33FAA] Length = 422 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 23/240 (9%), Positives = 58/240 (24%), Gaps = 26/240 (10%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 F I+ GRG GK+ + + + E + L+ + + + Sbjct: 16 EKFIILITGGRGSGKSFNASTFI--------ERLTFEMTPVEKIVHQILYTRYTMVSAGM 67 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 + + ++ + +K + + T Sbjct: 68 SIIPEMMEKIDLDGTTKYFKTTKTDIVNKMTKSRIMFRGIKTSSGNQTAKLKSIQGITTF 127 Query: 196 FNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE---DWKRY 251 DEA + I+ + I+ N N + Y + + Sbjct: 128 VCDEAEEWTSEDEFDKIMLSIRKKGIQNRIIIIMNPCDSNHFIYKKYIEKTHKLVEIDGV 187 Query: 252 QIDTRTVEGI--------------DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297 Q+ T + F + + + + ++G++ Sbjct: 188 QVQISTHPNVLHIHTTYFDNLDNLSPEFLKEVEDMKVGNPEKYAHVVIGRWADVAEGAVF 247 >gi|256751050|ref|ZP_05491933.1| conserved hypothetical protein [Thermoanaerobacter ethanolicus CCSD1] gi|256750160|gb|EEU63181.1| conserved hypothetical protein [Thermoanaerobacter ethanolicus CCSD1] Length = 259 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 88/286 (30%), Gaps = 44/286 (15%) Query: 11 LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70 E++L +++++ +L KNFV G P + H N+ Sbjct: 8 TEEKLQ--IINSDPILWLKNFVKIVNNQGEL-VPF------------IVNEEQEHFIKNM 52 Query: 71 NNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK 130 N I R IG TTL+ +ML+ T+P + ++ +N + + Sbjct: 53 GKYN------IILKARQIGFTTLSLGLMLYYACTKPNTHYLMLSYDTVSTQNI-FNRLKD 105 Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190 +P ++ + + + + + S + + Sbjct: 106 MYETIPDKY-----------KVPQKRMNKLELLLQNGSRI------SVKTASVKELGRSF 148 Query: 191 HGMAVFNDEASGTPDIINKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLED 247 + E + P + L + N + I+ S + FY IF + Sbjct: 149 SLQMIHCSEFAFWPAEQQERGLIALEQALLKNEDSKIIIESTANGIGNNFYKIFTDAQKG 208 Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293 + + + G + S Y + + R + G+ + Sbjct: 209 --KSKYKAFFYSWLGEGAKKQFKSEYKIAEEWYRSQNHGRRQSSDD 252 >gi|290959240|ref|YP_003490422.1| phage terminase [Streptomyces scabiei 87.22] gi|260648766|emb|CBG71879.1| putative phage terminase [Streptomyces scabiei 87.22] Length = 504 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 31/298 (10%), Positives = 66/298 (22%), Gaps = 32/298 (10%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 WQ + F+ A++ R GK + LW + I+ Sbjct: 36 DPWQQHVLRVGMAEKADGSWA----AFEVAVNVPRQNGKGGIIEARELWGLFIGGEELIL 91 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A+ KN + + + + P H Q W + ++ Sbjct: 92 HSAHEFKTAKNA-FRRIERLIRGCPDLHKRVKQYRQTVGEEWIELHDGAMLRFIARSKGS 150 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF--------FTELNPNRF 223 + M + D + L Sbjct: 151 GRGFSGHSNMLDEDMILGDNEMDALLPTMAAIDDPQIWYLGSAGIGAPSVQLARLRRRAL 210 Query: 224 WIMTSNTRRLNGWFYDI---------------FNIPLEDWKRYQIDTRTVEGIDSGFHEG 268 + + + + + D + + + Sbjct: 211 KAIEGGVPDPSLAYMEWSADLHVKECPKDCTAHDDAGSDAAVLKSNPAVGYRLSLAKVAN 270 Query: 269 IISRYGLDSDVARIEILGQFPQQEVNN--FIPHNYIEEAMSREAIDDLYAPLIMGCDI 324 + D +G++P E + I + E E+ D P+ D+ Sbjct: 271 ERATLSADGYARERLGVGEYPSDEEDAWQVIGRDVWEALADEESQPD--DPVAFAVDV 326 >gi|308174980|ref|YP_003921685.1| terminase large subunit [Bacillus amyloliquefaciens DSM 7] gi|307607844|emb|CBI44215.1| putative terminase large subunit [Bacillus amyloliquefaciens DSM 7] Length = 577 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 39/336 (11%), Positives = 91/336 (27%), Gaps = 60/336 (17%) Query: 43 KPLEHFSQPHR---WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99 P +P + +Q + + N K IS R GK+ L A + L Sbjct: 65 LPDISTGKPTKLALFQKFIVYMLYAW--RNKETGFRRFTKAYISMARKGGKSVLVAGLAL 122 Query: 100 WLISTRP----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 + + I ANS Q + + +S L + + + + Sbjct: 123 YELIYGESPKFDRQIYATANSRGQARTV-FKMISMQLKKIRSQSKAIRKWTKI------- 174 Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 ++ + I + + D+ + + DE + +L Sbjct: 175 --IQNEIRYLKDDCVIMPLSRDTDNLDSL------NVLIGILDEYHTASNTKMMEVLESS 226 Query: 216 TELNPNRFWIMTSNT-----------------------RRLNGWFYDIFNIPLEDWKRYQ 252 ++ S + +F ++ E+ + Sbjct: 227 QGQQDQGLILIISTAGFKLNGPMYSQEYPYVDDILSGRKENENYFAIVYEQDDEEEIYDE 286 Query: 253 IDT------RTVEGIDSGFHEGIISRYGL-----DSDVARIEILGQFPQQEVNNFIPHNY 301 VEG+ + + D + ++ + +F+ Sbjct: 287 STWIKSNPLLEVEGLQKKLLTNLRKKLKEALDKDDLNGTLVKNFNLWQSASSESFVNGRD 346 Query: 302 IEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFR 337 + A + + P+ +G D++ D + + F Sbjct: 347 WKSCGVDTAPEIMGKPVYIGVDLSRT-EDLSALSFI 381 >gi|302382339|ref|YP_003818162.1| phage DNA packaging protein [Brevundimonas subvibrioides ATCC 15264] gi|302192967|gb|ADL00539.1| phage DNA packaging protein [Brevundimonas subvibrioides ATCC 15264] Length = 447 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 31/289 (10%), Positives = 68/289 (23%), Gaps = 41/289 (14%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI--------------SAGRGIGKTTLNAWM 97 WQ + + K A+ GRG GKT A+ Sbjct: 24 RSWQERLAFIATYAPENGWKTIMMAMSKLALHQNPPEEPWRTWVMLGGRGSGKTFAGAFW 83 Query: 98 MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 L ++ R + + + ++ + S +M ++ Sbjct: 84 -LHSLAIRNNFTFALVGPALHDVREVMVEGPSGLKAMAEGADRPRWEAGRKRL------- 135 Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFF 215 + + + A + DE P+ + ++ Sbjct: 136 ----------VWPYSGAVAYAFSAEDPDSLRGPQFHAAWADEFCAWRAPERVLSNLRFGL 185 Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275 ++ + T R + P + TR + + Sbjct: 186 RRG--PDPQLVVTTTPRPIAALRTLLAEPGTR--TTRGATRDNAANLPPIYLDHLRDLYA 241 Query: 276 DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI 324 + + E+ G + I A R + +I+ D Sbjct: 242 GTRLEAQEMEGLVVEG-EGALFRAEDIAAA--RGERPERLEKIIVAVDP 287 >gi|281416387|ref|YP_003347411.1| terminase large subunit [Streptococcus phage Abc2] gi|226823038|gb|ACO83165.1| terminase large subunit [Streptococcus phage Abc2] Length = 623 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 42/331 (12%), Positives = 95/331 (28%), Gaps = 48/331 (14%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 +Q WQ + + ++N + +S GRG GKT L A + + Sbjct: 88 PNVDTGEPTQLMPWQKFILCMLFGWRNANGGKRFS---RAIVSVGRGQGKTYLMAILTAY 144 Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 + ++N + + + + + +K L + +Q+ E Sbjct: 145 SYFIE----SLGLSNQDYLVTSINFKQTNKLLGYIKSMMKQIIQNEPFKSLANETE---L 197 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTEL 218 + D ++ + H DE D ++K + G Sbjct: 198 GLHSDQVIMKANNNVLRAISAESGQYD-SFHFTTAIFDEIGEIETRDAVSKIVSGQVKVP 256 Query: 219 NPNRFWIMTSNTR----------------------RLNGWFYDIFNIPLEDWKRYQIDT- 255 N I T+ + + +++ D Sbjct: 257 NRQFIQISTAYPNPSVPFREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPETWA 316 Query: 256 RTVEGIDSGFHEGIISRYGLDS----------DVARIEILGQFPQQEVNNFIPHNYIEEA 305 ++ +D + + +D +++ + + + N+F+ IE A Sbjct: 317 KSNPLLDLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADSNSFLDLKDIENA 376 Query: 306 MSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 + E + +G D + D T + F Sbjct: 377 VIPEFDI-RGKRVYVGLDASMF-SDNTAIGF 405 >gi|312062887|gb|ADQ12749.1| putative DNA maturase B [Acinetobacter phage phiAB1] Length = 645 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 30/266 (11%), Positives = 71/266 (26%), Gaps = 37/266 (13%) Query: 6 STDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVH 65 E LM A LSF++F G F E E + + Sbjct: 24 PELIPKEDREMFALMFAGLFLSFRDFA-------ELGMAYLGFKM-----SEIQEDIADY 71 Query: 66 CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW 125 ++ + A RG K+TL A +W + RP + ++ Q +++ Sbjct: 72 MQHG------YKYRM-VQAQRGQAKSTLAALYCIWRLIQRPKDRCLIVSAGGDQA-DSIA 123 Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185 +++ ++ W + + + K +++ S + Sbjct: 124 LIITRIINQWDILCWMRPDTTRGDRDSAKNYDIHCDLKGIDKSASVSSVGISAQLA---- 179 Query: 186 GPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT-------SNTRRLNGWFY 238 + D+ + + ++ I + + + Sbjct: 180 ---GKRADFLLADDIEVMRNSMTQTEREKLALQTREFSAICIHGDIMYLGTPQTKDSIYR 236 Query: 239 DIFNIPLEDWKRYQIDTRTVEGIDSG 264 + +P + R + Sbjct: 237 E---LPRRGFSVRVWTGRYPTNEELE 259 >gi|154248423|ref|YP_001419381.1| hypothetical protein Xaut_4503 [Xanthobacter autotrophicus Py2] gi|154162508|gb|ABS69724.1| protein of unknown function DUF264 [Xanthobacter autotrophicus Py2] Length = 457 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 37/287 (12%), Positives = 77/287 (26%), Gaps = 26/287 (9%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST----RPGMSIICIANS 116 AV +H + + + FK + + R GKT ++ + ++ Sbjct: 4 AVPLHAYQRKWLLDGSRFKAGMFS-RQSGKTFTTTLEIVDDCFKAAVKTRRERWVILSRG 62 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 E Q + + + + + + + + IT Sbjct: 63 ERQAREAMEEGIKRHAAAYQLGF-----KTAEYDWQGDEGSHKALEVTLPHGSRITA--- 114 Query: 177 SEERPDTFVGPHNTHGMAVFNDEAS--GTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 P VF DE + I ++ ++ +TS Sbjct: 115 ---LPANPDTARGFSAN-VFLDEFAIHKDSKAIWGALFPVISKNGLRLR--VTSTPNGKG 168 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294 FY+I E W R+ +D + D D+ E ++ + Sbjct: 169 NKFYEIMTAADEVWSRHVVDIYQAVADGLPRDIDELRAGLADDDLWAQEYELKWLDEAS- 227 Query: 295 NFIPHNYIEEAMSR---EAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338 ++ ++ I + +G DI D V+ Sbjct: 228 AWLSYDLISSCEDERAGDPALYQGGVCFVGRDIGRR-QDLHVIWVWE 273 >gi|168211354|ref|ZP_02636979.1| putative phage terminase, large subunit [Clostridium perfringens B str. ATCC 3626] gi|170710621|gb|EDT22803.1| putative phage terminase, large subunit [Clostridium perfringens B str. ATCC 3626] Length = 566 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 40/341 (11%), Positives = 90/341 (26%), Gaps = 60/341 (17%) Query: 28 FKNF----VMRFFPWGIK-----GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78 F V+ F+ W G + WQL + N Sbjct: 48 PYYFDLDEVLDFYEWARLFKHRTGIVKGQRIEIIPWQLFIAGNL--FGWKNKKTDFRRFK 105 Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 K IS GR K+ L + + + S I + + ++ E++ LS + Sbjct: 106 KAFISVGRKNAKSELLSLIATYECFITDDNSEIYLTGWNKDGSDIVYREINYHLSHPYEK 165 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 +F+ + + + + + + + + D Sbjct: 166 DFFKGKYKTAYGKI---------------THLKSGSFIQPLSREAKNTDNANNPSLAIVD 210 Query: 199 EA-SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN--------------- 242 E I ++ T N I T+ T ++ Sbjct: 211 EYKDHVTSEIYDNLNTGMTRPNALIVIISTAGTNINCPMMFEYKYVSKVLNPDIKDVEND 270 Query: 243 ---------IPLEDWKRYQIDTRTVEGID-SGFHEGIIS-------RYGLDSDVARIEIL 285 +D K ++ + + + F + + + + + Sbjct: 271 EYFIMICELEKDDDIKDEKVWPKANPIVTLTEFGMEKLRGDLKVALDAPEKMRIFKTKNM 330 Query: 286 GQFPQQEVNNFIPHNYIEEA-MSREAIDDLYAPLIMGCDIA 325 + + ++ E+A + D P I+G D++ Sbjct: 331 NIWCDDREDGYMNMEKWEKAETEKNLEDFTGEPCILGVDLS 371 >gi|330858353|ref|YP_004414707.1| Gp2 [Propionibacterium phage PAS50] gi|260066564|gb|ACX30842.1| Gp2 [Propionibacterium phage PAS50] Length = 503 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 43/352 (12%), Positives = 94/352 (26%), Gaps = 47/352 (13%) Query: 39 GIKGKPLEHFSQ--PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96 G L P WQ + ++ + + R GK + Sbjct: 23 GNDAGELGRAYGLTPDPWQQQVLDDWLAV--GGNGRLASGVCGVFV--PRQNGKNAILEI 78 Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAE--VSKWLSMLPHRHWFEMQSLSLHPSGWY 154 + L+ + + G I+ A+ + + P + ++S+ Sbjct: 79 VELFKATIQ-GRRILHTAHELKSARKAFMRLRSFFENERQFPDLYR-MVKSIRATNGQEA 136 Query: 155 AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF 214 L + E + + DEA D +++L Sbjct: 137 IVLHHPDCATFERKCGCPGWGSVEFVARSRGSARGFTVDDLVCDEAQELSDEQLEALLPT 196 Query: 215 FT-ELNPNRFWIMTSNTR------------------RLNGWFYDIFNIPLE--------D 247 + + + I + + F+IP E Sbjct: 197 VSAAPSGDPQQIFLGTPPGPLADGSVVLRLRGQALSGGKRFAWTEFSIPDESDPDDVSRQ 256 Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ-EVNNFIPHN-YIEEA 305 W++ DT G F + + E LG + + + +P + + + A Sbjct: 257 WRKLAGDTNPALGRRLNFGTVSDEHESMSAAGFARERLGWWDRGQSAASVVPADKWAQSA 316 Query: 306 MSREAIDDLYAPLIMGCDIAGEGGDKTVVV----FRRGNIIEHIFDWSAKLI 353 + ++ + G + G D+ + G +E I S ++ Sbjct: 317 VDEASLV---GGKVFGVSFSRSG-DRVALAGAGRTDAGVHVEVIDGLSGTIV 364 >gi|221314872|ref|ZP_03596677.1| hypothetical protein BsubsN3_14247 [Bacillus subtilis subsp. subtilis str. NCIB 3610] Length = 433 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 29/227 (12%), Positives = 64/227 (28%), Gaps = 38/227 (16%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + G G K+ A ++ + R + + I +++ ++ + +S L H Sbjct: 25 LVGGYGSSKSYHVALKIVLKLL-REKRTALVIREVYDTHRDSTFSLFDELVSDLKLDHIV 83 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 S + + + I ++P + ++ +E S Sbjct: 84 RCVSSPM------------QIRFSNGSRIIFKGM---DKPAKLKSI--NNISLIWIEECS 126 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-------------------- 241 K +LG I+++N + W + F Sbjct: 127 EVKYEGFKELLGRLRHPTLPLHMILSTNPVGEDNWTFKHFFKDDREKRFVLDDKELYEKR 186 Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 I D + + + + + D D+ RI G F Sbjct: 187 IIVSNDTYYHHSTADDNLFLPESYVQQLEELKEYDPDLYRIARKGHF 233 >gi|16079672|ref|NP_390496.1| phage-related terminase large subunit; skin element [Bacillus subtilis subsp. subtilis str. 168] gi|221310548|ref|ZP_03592395.1| hypothetical protein Bsubs1_14326 [Bacillus subtilis subsp. subtilis str. 168] gi|221319794|ref|ZP_03601088.1| hypothetical protein BsubsJ_14163 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324073|ref|ZP_03605367.1| hypothetical protein BsubsS_14297 [Bacillus subtilis subsp. subtilis str. SMY] gi|1176739|sp|P45916|YQAT_BACSU RecName: Full=Uncharacterized protein yqaT; AltName: Full=ORF50 gi|1217848|dbj|BAA06933.1| ORF50 [Bacillus subtilis] gi|1303739|dbj|BAA12395.1| YqaT [Bacillus subtilis] gi|2635064|emb|CAB14560.1| putative phage-related terminase large subunit; skin element [Bacillus subtilis subsp. subtilis str. 168] Length = 431 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 29/227 (12%), Positives = 64/227 (28%), Gaps = 38/227 (16%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + G G K+ A ++ + R + + I +++ ++ + +S L H Sbjct: 23 LVGGYGSSKSYHVALKIVLKLL-REKRTALVIREVYDTHRDSTFSLFDELVSDLKLDHIV 81 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 S + + + I ++P + ++ +E S Sbjct: 82 RCVSSPM------------QIRFSNGSRIIFKGM---DKPAKLKSI--NNISLIWIEECS 124 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-------------------- 241 K +LG I+++N + W + F Sbjct: 125 EVKYEGFKELLGRLRHPTLPLHMILSTNPVGEDNWTFKHFFKDDREKRFVLDDKELYEKR 184 Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 I D + + + + + D D+ RI G F Sbjct: 185 IIVSNDTYYHHSTADDNLFLPESYVQQLEELKEYDPDLYRIARKGHF 231 >gi|294778788|ref|ZP_06744207.1| phage terminase, large subunit, PBSX family [Bacteroides vulgatus PC510] gi|294447444|gb|EFG16025.1| phage terminase, large subunit, PBSX family [Bacteroides vulgatus PC510] Length = 422 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 23/240 (9%), Positives = 58/240 (24%), Gaps = 26/240 (10%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 F I+ GRG GK+ + + + E + L+ + + + Sbjct: 16 EKFIILITGGRGSGKSFNASTFI--------ERLTFEMTPVEKIVHQILYTRYTMVSAGM 67 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 + + ++ + +K + + T Sbjct: 68 SIIPEMMEKIDLDGTTKYFKTTKTDIVNKMTKSRIMFRGIKTSSGNQTAKLKSIQGITTF 127 Query: 196 FNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE---DWKRY 251 DEA + I+ + I+ N N + Y + + Sbjct: 128 VCDEAEEWTSEDEFDKIMLSIRKKGIQNRIIIIMNPCDSNHFIYKKYIEKTHKLVEIDGV 187 Query: 252 QIDTRTVEGI--------------DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297 Q+ T + F + + + + ++G++ Sbjct: 188 QVQISTHPNVLHIHTTYFDNLDNLSPEFLKEVEDMKVSNPEKYAHVVIGRWADVAEGAVF 247 >gi|256851371|ref|ZP_05556760.1| phage terminase [Lactobacillus jensenii 27-2-CHN] gi|260660794|ref|ZP_05861709.1| terminase-large subunit [Lactobacillus jensenii 115-3-CHN] gi|256616433|gb|EEU21621.1| phage terminase [Lactobacillus jensenii 27-2-CHN] gi|260548516|gb|EEX24491.1| terminase-large subunit [Lactobacillus jensenii 115-3-CHN] Length = 571 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 48/307 (15%), Positives = 98/307 (31%), Gaps = 61/307 (19%) Query: 69 NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP----GMSIICIANSETQLKNTL 124 ++S+ K IS R GKT L A + L+++ + G I C AN Q K Sbjct: 89 RKSDSHRKFKKMFISMARKNGKTILVAGIALYILLYQKYPVRGKQIYCAANKRDQAK-VA 147 Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP--D 182 + ++ +L L + F + + + +T S +P + Sbjct: 148 FNYINNFLVPLRNDSPFVKRKTQMK-----------------RDEITDAKTGSFIKPLSN 190 Query: 183 TFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN-TRRLNGWFYD-- 239 G + DE + + DI + + + + ++ S + +NGWF++ Sbjct: 191 DKNGIQGLNTTLAIFDEQADSNDITVYDAVEKSSRMQKDPLMLLISTVSPNINGWFHEMI 250 Query: 240 --------------------IFNIPLEDWKRYQIDT-RTVEGIDSGFHEGII-------- 270 + ED + ++ + + Sbjct: 251 YQYVEQMVKGDVVDDETMVLWYEQESEDEIADTANWIKSNPILYDKDIRETLLPTLIQDW 310 Query: 271 --SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD-LYAPLIMGCDIAGE 327 ++ A+I + Q N++I + + D + +G D+A Sbjct: 311 KTAQAMGRETKAKIYNFNMWQQANENSYIKVQDW-ANIKVDKTPDLYGREVYIGMDLART 369 Query: 328 GGDKTVV 334 G D + V Sbjct: 370 G-DLSAV 375 >gi|261340356|ref|ZP_05968214.1| putative terminase large subunit protein [Enterobacter cancerogenus ATCC 35316] gi|288317447|gb|EFC56385.1| putative terminase large subunit protein [Enterobacter cancerogenus ATCC 35316] Length = 490 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 44/339 (12%), Positives = 80/339 (23%), Gaps = 90/339 (26%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + I R +G TT + L + IA++ K +V LP Sbjct: 48 RNIILKARQLGFTTEVCIIQL-DAALFESAKCALIAHTLNDAKRLFREKVKYAYDKLPA- 105 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + + + + ++ T H Sbjct: 106 --------EIKAANPASNDSSGELVFKKGGSLYVSTSFRG---GTLRYLH--------VS 146 Query: 199 EASGT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-------- 246 E PD + + G F ++ F + S G+F+D + Sbjct: 147 EFGKICAKYPDKAREIVTGAFEAVSTGCFATIESTAEGRAGYFFDYCQTAEKALLQGKPL 206 Query: 247 ---DWKRYQIDTRTVEGIDSGFHE------------------------------------ 267 DWK + E Sbjct: 207 SALDWKFFFFSWWKNPQYAIDPVEPLPQRLVDYFAEMEAKHGVVVNDRQKAWYYAKEKTL 266 Query: 268 ---GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI 324 + ++ + + G + ++ + D+ + P+ DI Sbjct: 267 GDDMKREYPTIPAEAFQQSVEGAYYAKQFRWLYT-----NKRIGQIPDNSHLPVHTFWDI 321 Query: 325 AGEGGDKTVVVFRR--GNIIEHIFDWSAKLIQETNQEGC 361 GD T + F R GN I E + EG Sbjct: 322 GV--GDSTAIWFVREVGNEFHII------DYYENSGEGL 352 >gi|270296849|ref|ZP_06203048.1| PBSX family phage terminase, large subunit [Bacteroides sp. D20] gi|270272836|gb|EFA18699.1| PBSX family phage terminase, large subunit [Bacteroides sp. D20] Length = 422 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 23/240 (9%), Positives = 58/240 (24%), Gaps = 26/240 (10%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 F I+ GRG GK+ + + + E + L+ + + + Sbjct: 16 EKFIILITGGRGSGKSFNASTFI--------ERLTFEMTPVEKIVHQILYTRYTMVSAGM 67 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 + + ++ + +K + + T Sbjct: 68 SIIPEMMEKIDLDGTTKYFKTTKTDIVNKMTKSRIMFRGIKTSSGNQTAKLKSIQGITTF 127 Query: 196 FNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE---DWKRY 251 DEA + I+ + I+ N N + Y + + Sbjct: 128 VCDEAEEWTSEDEFDKIMLSIRKKGIQNRIIIIMNPCDSNHFIYKKYIEKTHKLVEIDGV 187 Query: 252 QIDTRTVEGI--------------DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297 Q+ T + F + + + + ++G++ Sbjct: 188 QVQISTHPNVLHIHTTYFDNLDNLSPEFLKEVEDMKVSNPEKYAHVVIGRWADVAEGAVF 247 >gi|254884635|ref|ZP_05257345.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|254837428|gb|EET17737.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] Length = 422 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 23/240 (9%), Positives = 58/240 (24%), Gaps = 26/240 (10%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 F I+ GRG GK+ + + + E + L+ + + + Sbjct: 16 EKFIILITGGRGSGKSFNASTFI--------ERLTFEMTPVEKIVHQILYTRYTMVSAGM 67 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 + + ++ + +K + + T Sbjct: 68 SIIPEMMEKIDLDGTTKYFKTTKTDIVNKMTKSRIMFRGIKTSSGNQTAKLKSIQGITTF 127 Query: 196 FNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE---DWKRY 251 DEA + I+ + I+ N N + Y + + Sbjct: 128 VCDEAEEWTSEDEFDKIMLSIRKKGIQNRIIIIMNPCDSNHFIYKKYIEKTHKLVEIDGV 187 Query: 252 QIDTRTVEGI--------------DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297 Q+ T + F + + + + ++G++ Sbjct: 188 QVQISTHPNVLHIHTTYFDNLDNLSPEFLKEVEDMKVSNPEKYAHVVIGRWADVAEGAVF 247 >gi|223933566|ref|ZP_03625547.1| Terminase [Streptococcus suis 89/1591] gi|223897762|gb|EEF64142.1| Terminase [Streptococcus suis 89/1591] Length = 471 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 42/300 (14%), Positives = 85/300 (28%), Gaps = 48/300 (16%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ+ +E + ++ + + R GKT + LW + G+ I+ Sbjct: 43 PWQVNLLENIMGIDNNGLWVHQKYGYAI----PRRNGKTEDVYILELWAL--HHGLRILH 96 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 A+ + + + + K L + G+ ++ S + Sbjct: 97 TAHRISTSH-SSFEALKKLLEDM----------------GYVEDVDFVSNKAKGQERIEF 139 Query: 173 CRTYS--EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 T S + R T G + DEA ++ T+ + +M Sbjct: 140 KSTGSVIQYRTRTSNGGLGEGFDLLIIDEAQEYTVEQESALKYTVTDSDNPMT-VMCGTP 198 Query: 231 RRLNGW--------------------FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE-GI 269 + + + ++D T + E I Sbjct: 199 PTMVSTGTVFTNFRTKVLAGKSEYSGWSEWSVEDIKDVNDIDSWYLTNPSLGYHLTERKI 258 Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329 + G D I+ LG +P + I N + + +L L +G +G Sbjct: 259 KAEIGDDELDHNIQRLGYWPSFNQKSAISENEWKRLKVDDV-PELSGKLFVGIKYGQDGS 317 >gi|328912284|gb|AEB63880.1| SPBc2 prophage-derived uncharacterized protein yonF [Bacillus amyloliquefaciens LL3] Length = 589 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 78/302 (25%), Gaps = 63/302 (20%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 A RG GKT L + PG I+ + ++ Q + + + P+ Sbjct: 83 LASRGQGKTWLTSVYCCVQAILFPGTKIVIASGTKGQAREVIEK-IDDLRKESPN----- 136 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 L + + + + + + + DE Sbjct: 137 ---LRREIEDLKTSTNDAKVEFHNGSWIKIVASNDG--------ARSKRANLLIVDEFRM 185 Query: 203 TP-DIINKSILGFFTELNPNRFW--------------IMTSNTRRLNGWFYDIF------ 241 +II+K + F T ++ I S+ W ++ F Sbjct: 186 VDFEIISKVLRKFLTAPRSPKYLEKEEYAHLKERNKEIYLSSCWYKVHWSFNRFITYYNA 245 Query: 242 NIPLEDWKRYQIDTRTV---EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIP 298 + + + + +D ++ D +E+ + + + Sbjct: 246 MMKGSKYFVCGLPYQIAIKEGLLDKDQVRDEMAEEDFDPIGWSMEMEALWFGESEKAYFK 305 Query: 299 HNYIEEAMSREAID-------------------DLYAPLIMGCDIAGEGG---DKTVVVF 336 IE+ + ++ DIAG G D +V Sbjct: 306 FEDIEKNRKLASPLFPPDYYSLIKDSNFKYESKKPGEIRLVSNDIAGMAGKDNDASVYTV 365 Query: 337 RR 338 R Sbjct: 366 FR 367 >gi|9630181|ref|NP_046608.1| hypothetical protein SPBc2p056 [Bacillus phage SPBc2] gi|16079170|ref|NP_389994.1| prophage terminase, ATP subunit; phage SPbeta [Bacillus subtilis subsp. subtilis str. 168] gi|221310018|ref|ZP_03591865.1| hypothetical protein Bsubs1_11626 [Bacillus subtilis subsp. subtilis str. 168] gi|221314340|ref|ZP_03596145.1| hypothetical protein BsubsN3_11547 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319262|ref|ZP_03600556.1| hypothetical protein BsubsJ_11473 [Bacillus subtilis subsp. subtilis str. JH642] gi|221323538|ref|ZP_03604832.1| hypothetical protein BsubsS_11602 [Bacillus subtilis subsp. subtilis str. SMY] gi|81342066|sp|O31952|YONF_BACSU RecName: Full=SPBc2 prophage-derived uncharacterized protein yonF gi|2634531|emb|CAB14029.1| putative prophage terminase, ATP subunit; phage SPbeta [Bacillus subtilis subsp. subtilis str. 168] gi|3025534|gb|AAC13029.1| unknown [Bacillus phage SPbeta] Length = 589 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 78/302 (25%), Gaps = 63/302 (20%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 A RG GKT L + PG I+ + ++ Q + + + P+ Sbjct: 83 LASRGQGKTWLTSVYCCVQAILFPGTKIVIASGTKGQAREVIEK-IDDLRKESPN----- 136 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 L + + + + + + + DE Sbjct: 137 ---LRREIEDLKTSTNDAKVEFHNGSWIKIVASNDG--------ARSKRANLLIVDEFRM 185 Query: 203 TP-DIINKSILGFFTELNPNRFW--------------IMTSNTRRLNGWFYDIF------ 241 +II+K + F T ++ I S+ W ++ F Sbjct: 186 VDFEIISKVLRKFLTAPRSPKYLEKEEYAHLKERNKEIYLSSCWYKVHWSFNRFITYYNA 245 Query: 242 NIPLEDWKRYQIDTRTV---EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIP 298 + + + + +D ++ D +E+ + + + Sbjct: 246 MMKGSKYFVCGLPYQIAIKEGLLDKDQVRDEMAEEDFDPIGWSMEMEALWFGESEKAYFK 305 Query: 299 HNYIEEAMSREAID-------------------DLYAPLIMGCDIAGEGG---DKTVVVF 336 IE+ + ++ DIAG G D +V Sbjct: 306 FEDIEKNRKLASPLFPPDYYSLIKDSNFKYEGKKPGEIRLVSNDIAGMAGKDNDASVYTV 365 Query: 337 RR 338 R Sbjct: 366 FR 367 >gi|114566835|ref|YP_753989.1| hypothetical protein Swol_1310 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337770|gb|ABI68618.1| hypothetical protein Swol_1310 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 522 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 28/248 (11%), Positives = 70/248 (28%), Gaps = 39/248 (15%) Query: 22 AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81 + F + F L F P+ Q++F +D Sbjct: 8 EKINNDFFLWAKNFIKIIDNNGNLVKFV-PNEQQVDFFNNMDKFN--------------I 52 Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 I+ R +G ++L LW+ T+P + + ++ + L+ ++ + S +P ++ Sbjct: 53 IAKSRQLGFSSLAIIYSLWIACTKPNTNCLMVSYNVEST-QALFEKMKQIYSDIPDKY-- 109 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + +++ + + + + E + Sbjct: 110 ---------KPAEKRNNRMELYLENGSRIMV------KTAGVKSLGRGMNLQYIHLSEFA 154 Query: 202 GTPDIINKSILGFFTELNPNRF--WIMTSNTRRLNGWFYDIFNIP----LEDWKRYQIDT 255 PD K L + I+ T ++ +F +K + Sbjct: 155 FYPDDQQKDALVSLEQALAKNMDSKIVIETTSNGYNYYQKLFTNAYKSKQSKYKAFFYPW 214 Query: 256 RTVEGIDS 263 + + Sbjct: 215 TSSATANQ 222 >gi|150390597|ref|YP_001320646.1| hypothetical protein Amet_2837 [Alkaliphilus metalliredigens QYMF] gi|149950459|gb|ABR48987.1| conserved hypothetical protein [Alkaliphilus metalliredigens QYMF] Length = 519 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 26/252 (10%), Positives = 75/252 (29%), Gaps = 28/252 (11%) Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 + + + + R +G +TL + ++ T+P + + ++ S N ++ Sbjct: 48 QQLKFVEEKSKYNVILKS-RQLGFSTLACGLSVYTACTKPNTTSLLLSYSIDSA-NGIFD 105 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 ++ + +P ++ + ++ + Sbjct: 106 KLKQIYYDMPD-----------VLKPALHNNNKKELKFENGSKIVISTC------GNKDV 148 Query: 187 PHNTHGMAVF-NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN--GWFYDIFNI 243 + E + + I K +L ++ + I+ S LN F++ Sbjct: 149 ARGLTLNGIVHISEMAFMKETIEKQLLAIEQAVSTDGIIIVESTANGLNFFNQFWEKAEN 208 Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI--EILGQFPQQEVNNFIPHNY 301 + +K + + E + + E+ G+ E++ + Sbjct: 209 QVNMYKPFFFSWIEDRVMFVEEIEQFVEVWKDRHGTLPSVDELEGE----ELDLYEQGAT 264 Query: 302 IEEAMSREAIDD 313 IE+ + R Sbjct: 265 IEQLVWRRLKIS 276 >gi|262039284|ref|ZP_06012601.1| phage terminase, large subunit, pbsx family [Leptotrichia goodfellowii F0264] gi|261746674|gb|EEY34196.1| phage terminase, large subunit, pbsx family [Leptotrichia goodfellowii F0264] Length = 438 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 27/257 (10%), Positives = 68/257 (26%), Gaps = 28/257 (10%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 ++ + H ++ I+ G GK+ A ++ R ++ I Sbjct: 1 MKVELDISEHFQKFIDEETSDIYFLI--GSYGSGKSYNIATKLIVNSF-REKRKVLGIRK 57 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 ++++++ ++ +S L +F++ + + I +K Sbjct: 58 VYRDVRDSVFTDLVDVISELELEGYFKIITGR--------------LEIVNKITGSKFIF 103 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 + ++ +EA+ K + N +++N + Sbjct: 104 RGLDEVGRLKSIKG--ITDIWIEEANQCDRNDFKQLRYRLRTPNIKMHMYISTNPAEPDS 161 Query: 236 WFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN 295 + D V + I I + N Sbjct: 162 --------ASNWTYWFLTDYMNVTEETLYDVKEFIKSIEDKETGYIQRIYVNHSTYKENK 213 Query: 296 FIP-HNYIEEAMSREAI 311 F+P E M + Sbjct: 214 FLPESAVAELNMETDPY 230 >gi|16800336|ref|NP_470604.1| hypothetical protein lin1267 [Listeria innocua Clip11262] gi|16413741|emb|CAC96498.1| lin1267 [Listeria innocua Clip11262] Length = 444 Score = 57.3 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 62/225 (27%), Gaps = 34/225 (15%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 G K+ A ++ + + + + K++ +A +++ L + + Sbjct: 31 GAYGSSKSYATAEKIIIKLFE-EKRKCLVVRDVHESHKDSTFALLTEILEEMGVVGRGK- 88 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + I ++P + ++ +E S Sbjct: 89 -------RKVVITQSPMKIKFPNGSSIIFKGL---DKPSKLKSI--ANISIIWVEECSEI 136 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF--------------------NI 243 K +LG I+TSN ++ W Y F I Sbjct: 137 SYAAYKELLGRLRHPFLKTHIILTSNPVSIDNWVYLHFFEDFINKRFILSDSLLYEKRII 196 Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 + + + + + + D D+ R+ G+F Sbjct: 197 KKNNTYYHHSVAEDNYFLTQDYIDDLEDMKNYDPDLYRVARQGRF 241 >gi|296445235|ref|ZP_06887194.1| conserved hypothetical protein [Methylosinus trichosporium OB3b] gi|296257190|gb|EFH04258.1| conserved hypothetical protein [Methylosinus trichosporium OB3b] Length = 482 Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 82/302 (27%), Gaps = 47/302 (15%) Query: 60 EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN-------AWMMLWLISTRPGMSII- 111 + + + GR GK+ A + W PG ++ Sbjct: 40 RPIFETLSGRAAEPQQRVEELWAIIGRRGGKSRAAAVLGAYVAGLCDWSEFRAPGERLLL 99 Query: 112 -CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 ++ + Q + + L + + + A L+ + I Sbjct: 100 PIMSATVWQA--------VRIKNYLDGVFALPAFAEMVESNAAEAISLKSYVDI------ 145 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--------PDIINKSILGFFTELNPNR 222 E RP +F + DE + I ++ Sbjct: 146 -------ECRPASFRTSRGATLIGAIVDEVAFLRQEGTANPDREILNALRPGLAT--TAG 196 Query: 223 FWIMTSNTRRLNGWFYDIF---NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279 + S+ G Y F + P D ++ + + I + D+ V Sbjct: 197 MLVCISSPHARRGELYRAFRDHHGPAGDPAILVARASSLVMNPTLSPQVIRRAFERDAAV 256 Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSRE---AIDDLYAPLIMGCDIAGEGGDKTVVVF 336 A E GQF + +V +F+ +E A+ + + D +G D + Sbjct: 257 AAAEYGGQF-RVDVESFVSREVVEAAVVADRFELPPCAGVKYVAFTDPSGGSSDAMTLAI 315 Query: 337 RR 338 Sbjct: 316 AH 317 >gi|148548588|ref|YP_001268690.1| hypothetical protein Pput_3380 [Pseudomonas putida F1] gi|148512646|gb|ABQ79506.1| protein of unknown function DUF264 [Pseudomonas putida F1] Length = 433 Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 31/270 (11%), Positives = 70/270 (25%), Gaps = 37/270 (13%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 AG G GKT + + + P + A + Q+++ + + Sbjct: 23 AGFGSGKTWVGCAALCKHVWEWPRIDSGYFAPTYPQIRDIFFPTIE-------------- 68 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + ++ + S + + DE Sbjct: 69 EVAFDWGLKVKTKESDKEVEFYSGGQYRSTTICRSM--EKPQTIVGFKIGHALVDELDVL 126 Query: 204 P----DIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIF-------NIPLEDWKRY 251 P + + I+ + + + + T + Y F + Sbjct: 127 PALKAEHAWRKIIARMRYNVPGLKNGVDVTTTPEGFKFVYQQFVKQLREKPALQGMYGLV 186 Query: 252 QIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY--IEEAMSR 308 Q T E + + ++ Y + + + GQF + + Sbjct: 187 QASTFDNELNLPPDYIPSLMESY--PAQLILAYLNGQFVNLNAGSIYHAYDRKLNSCFDT 244 Query: 309 EAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338 + PL +G D G +V +R Sbjct: 245 ---VEPGEPLFIGMDF-NVGKMAAIVHVKR 270 >gi|83941208|ref|ZP_00953670.1| Phage terminase-like protein large subunit [Sulfitobacter sp. EE-36] gi|83847028|gb|EAP84903.1| Phage terminase-like protein large subunit [Sulfitobacter sp. EE-36] Length = 567 Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 32/289 (11%), Positives = 75/289 (25%), Gaps = 44/289 (15%) Query: 75 PTIFKCAISAGRGIGKTTLNAWMM---LWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131 P +S GRG GK+ + A + L + R I A +W V+ + Sbjct: 106 PETANAILSIGRGNGKSAITAGLALGGLIGVWDRQPRREIIAAARTRDQGRIIWDFVAGF 165 Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191 ++ LP + ++ ++ ++ Sbjct: 166 IASLP-------------LEIQRHFIFRRAPRLEIEYQGDGGGHILRVIAADGKSALGGA 212 Query: 192 GMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247 DE D + ++L + F I TS + + + I + Sbjct: 213 PTMAILDERGHWALDRGDELEHALLSGLGKREGRAFLISTSASDDTHPFSRWIDDPSTGS 272 Query: 248 WKRYQIDTRTVE------------------GIDSGFHE--GIISRYGLDSDVARIEILGQ 287 + + + G + + E + S + + + Sbjct: 273 YIQEHRPAPGLPADDVESLLIANPGAPHGIGGNIEWLEGQAKRAIARGGSSLTSFRLYNR 332 Query: 288 FPQ---QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTV 333 + + I + + + +++G D+ G Sbjct: 333 NERVAGDSRDLLITLDEWLGC-ETDDLPPRQGGVVIGIDLGGSASMTAA 380 >gi|270265272|ref|ZP_06193533.1| phage terminase, large subunit [Serratia odorifera 4Rx13] gi|270040676|gb|EFA13779.1| phage terminase, large subunit [Serratia odorifera 4Rx13] Length = 516 Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 39/318 (12%), Positives = 89/318 (27%), Gaps = 59/318 (18%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ + ++ +N + F+ A + +G+G GK+ L+A + L+ + P Sbjct: 25 PWQAFVVGSIFGWKRANGSR----RFRTAYVESGKGSGKSPLSAGIGLYCLMADKEPRAE 80 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 + A + Q L+ + ++ P ++ ++ S G + Sbjct: 81 VYAAATKKDQAM-ILFRDAVAMVNQSP----------------ALSQRIDPSGGAGKEWN 123 Query: 170 TITCRTYSEERP-DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 +T S RP + G DE D ++ T+ M + Sbjct: 124 LAFLQTGSFFRPISSDDGQSGPRPHCALIDEVHEHKDNKAVEMMRAGTKGRRQALIFMIT 183 Query: 229 NTR-RLNGWFYDIFNIP---------------------------LEDWKRYQIDTRTVEG 260 N+ Y+ ++ + + Sbjct: 184 NSGHDKTSVCYEYHQYGKQLAAGQKTNDAFFAFICSLDDGDDPFKDESCWPKANPSMGHT 243 Query: 261 IDSGFHEGIISRYGL---DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR-EAIDDLYA 316 + + + R ++ N +I + + + Sbjct: 244 FQPEYLREQVEDARGMPSKESLVRRLNFCEWVD-AENPWIGGDVWMACEKTFDIAELQGR 302 Query: 317 PLIMGCDIAGEGGDKTVV 334 G D++G+ D T + Sbjct: 303 MCYGGLDLSGK-RDLTAL 319 >gi|168465704|ref|ZP_02699586.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195631716|gb|EDX50236.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 490 Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 44/333 (13%), Positives = 82/333 (24%), Gaps = 78/333 (23%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + I R +G TT + L + IA++ K +V LP Sbjct: 48 RNIILKARQLGFTTEVCIIQL-DAALFESAKCALIAHTLNDAKRLFREKVKYAYDKLPE- 105 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + + + + ++ T H Sbjct: 106 --------EIKAANPASNDSSGELVFKKGGSLYVSTSFRG---GTLRYLH--------VS 146 Query: 199 EASGT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-------- 246 E PD + + G F ++ F + S G+F+D + Sbjct: 147 EFGKICAKYPDKAREIVTGAFEAVSTGCFATIESTAEGRAGYFFDYCQTAEKALLQGKPL 206 Query: 247 ---DWKRYQIDTRTVEGIDSGFHE-----------GIISRYG----LDSDVARI---EIL 285 DWK + E + +++G + L Sbjct: 207 SALDWKFFFFSWWKNPQYAIDPVESLPVRLVDYFAEMEAKHGVVVNERQKAWYYAKEKTL 266 Query: 286 GQ-------------FPQQEVNNFIPHN---YIEEAMSREAIDDLYAPLIMGCDIAGEGG 329 G F Q + + D+ + P+ DI G Sbjct: 267 GDDMKREYPTIPAEAFQQSVEGAYYAKQFRWLYTNKRIGKIPDNSHLPVHTFWDIGV--G 324 Query: 330 DKTVVVFRRGNIIEHIF-DWSAKLIQETNQEGC 361 D T + F + + ++ E + EG Sbjct: 325 DSTAIWF-----VREVGEEFHIIDYYENSGEGL 352 >gi|319645791|ref|ZP_08000021.1| YonF protein [Bacillus sp. BT1B_CT2] gi|317391541|gb|EFV72338.1| YonF protein [Bacillus sp. BT1B_CT2] Length = 589 Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 80/302 (26%), Gaps = 63/302 (20%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 A RG GKT L + PG I+ + ++ Q + + + P+ Sbjct: 83 LASRGQGKTWLTSVYCCVQAILFPGTKIVIASGTKGQAREVIEK-IDDLRKESPN----- 136 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 L + + + + + + + DE Sbjct: 137 ---LKREIEDLKTSTNDARVEFHNGSWIKIVASNDG--------ARSKRANLLIVDEFRM 185 Query: 203 TP-DIINKSILGFFTELNPNRFW--------------IMTSNTRRLNGWFYDIF------ 241 +II+K + F T ++ I S+ W Y F Sbjct: 186 VDFEIISKVLRKFLTAPRSPKYLEKEEYAHLKERNKEIYLSSCWYKVHWSYGRFVTYFNA 245 Query: 242 NIPLEDWKRYQIDTRTV---EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIP 298 + + + + +D + +S D +E+ + + + Sbjct: 246 MMKGSKYFVCGLPYQIAIREGLLDKDQVKDEMSEEDFDPIGWSMEMEALWFGESEKAYFK 305 Query: 299 HNYIEEAMSRE---AIDDLYAPL----------------IMGCDIAGEGG---DKTVVVF 336 +E+ D Y + ++ DIAG G D +V Sbjct: 306 FEDLEKNRKLASPLFPPDYYDLIKDSNFKFENKKPGELRLISNDIAGMAGKDNDASVYTV 365 Query: 337 RR 338 R Sbjct: 366 FR 367 >gi|241763591|ref|ZP_04761642.1| phage terminase large subunit [Acidovorax delafieldii 2AN] gi|241367184|gb|EER61538.1| phage terminase large subunit [Acidovorax delafieldii 2AN] Length = 521 Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 30/210 (14%), Positives = 51/210 (24%), Gaps = 48/210 (22%) Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW--IMTSNTRRL- 233 S + P +V A DE ++ ++++G+ P + N Sbjct: 125 SVKEPGDWVKYQGRPHDAKLFDEICHFTELQFRTLIGWLRTDRPEIRQRVVCAGNPPTTA 184 Query: 234 ----NGWFYDIFNIPLE---------DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280 F+ + P W +E S Sbjct: 185 EGEWVKRFWAAWLDPQHPNRAKPGELRWYVTDEKGEDMEVPGPEMVLVGTELMKPKSRTF 244 Query: 281 ----------------------------RIEILGQFPQQEVN---NFIPHNYIEEAMSRE 309 + G F + IP +++ A +R Sbjct: 245 IPSSVDDNLFLASTGYKGTLQSLPEPLRSQMLRGDFSAGAADPAWQLIPTEWVKAAQARW 304 Query: 310 AIDDLYAP-LIMGCDIAGEGGDKTVVVFRR 338 P ++G D A G DKT V R Sbjct: 305 QPRQDKGPMTVLGLDPARGGTDKTSVARRH 334 >gi|9632939|ref|NP_049967.1| putative large subunit terminase [Streptococcus phage Sfi21] gi|5230827|gb|AAD41029.1|AF112470_4 terminase large subunit [Streptococcus phage Sfi21] gi|5524034|gb|AAD44086.1|AF115103_2 orf623 gp [Streptococcus phage Sfi21] Length = 623 Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 44/347 (12%), Positives = 94/347 (27%), Gaps = 53/347 (15%) Query: 25 VLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISA 84 F +Q WQ + + ++N + +S Sbjct: 77 ADKLLRFARIC-----PNVDTGEPTQLMPWQKFILCMLFGWRNANGGKRFS---RAIVSV 128 Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 GRG GKT L A + + ++N + + + + + +K L + +Q Sbjct: 129 GRGQGKTYLMAILTAYSYFIE----SFGLSNQDYLVTSIKFKQTNKLLGYIKSMMKQIIQ 184 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 E + D ++ + H DE Sbjct: 185 KEPFKSLANETE---LGLHSDQVIMKANNNILRAISAESGQYD-SFHFTTAIFDEMGEIE 240 Query: 205 --DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL----------------- 245 + ++K + G N I T+ + D + Sbjct: 241 TRNAVSKIVSGQVKVPNRQFIQISTAYPNPSVPFREDQMIMQQAMEDDDNREADTYLCLV 300 Query: 246 ----EDWKRYQIDTRTVEGIDSGFHEGIISRY-----GLDSDV-------ARIEILGQFP 289 + +Q +T + + DSD+ +++ + + Sbjct: 301 WSQDNLEEVFQPETWMKSNPLLDLEQERDNLMKGLLDKRDSDLLSGNLSDFQVKNMNCWL 360 Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 + N+F+ IE A+ + + +G D + D T + F Sbjct: 361 LADSNSFLDLKDIENAVIDDFDI-KGKRVYVGLDASMF-SDNTALGF 405 >gi|319649911|ref|ZP_08004061.1| hypothetical protein HMPREF1013_00666 [Bacillus sp. 2_A_57_CT2] gi|317398349|gb|EFV79037.1| hypothetical protein HMPREF1013_00666 [Bacillus sp. 2_A_57_CT2] Length = 536 Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 15/215 (6%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 I GR IG TT + ML+ T+ S + + + ++ +L ++K LPH Sbjct: 56 IILKGRQIGFTTWSLSYMLYSAITKSDTSYLMMTH-HNKVTQSLLRRINKMYQSLPHD-- 112 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 H + ++ V E Sbjct: 113 ---NPKYSHLFPKKIISNRDEIYFENGSRIQVAT------AGGEDSISGNTFELVHLSEM 163 Query: 201 SGTPDIINKSILGFF--TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 + P+ + I+ I+ +T + ++F + Sbjct: 164 AKYPNEAQEEIIATSIPALAKNPNSKIIIESTAMGFNTYQEMFMKAFRGKESVWKAHFYS 223 Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293 + + + + R+ G + Sbjct: 224 -WLAKAYSNQFKHSFDEAEEWFRLHNKGSRMTSKD 257 >gi|150397098|ref|YP_001327565.1| hypothetical protein Smed_1896 [Sinorhizobium medicae WSM419] gi|150028613|gb|ABR60730.1| protein of unknown function DUF264 [Sinorhizobium medicae WSM419] Length = 443 Score = 56.9 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 31/305 (10%), Positives = 75/305 (24%), Gaps = 52/305 (17%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + + G GKT + ++ PG + Sbjct: 5 RLTEKQREANRLLAGPARNIMLRGGSRSGKTFVLCRALIQRAINAPGSRHVIFRFRFNHA 64 Query: 121 KNTLWAE-VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 K ++W++ + K L++ + + + +E Sbjct: 65 KTSVWSDTLPKVLALCFPSVRVRFDKTDFYVALP------------NGSQIWIAGLDDKE 112 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS----------- 228 R + ++ +E+S P + + + I + Sbjct: 113 RVEK---ILGQEYATLYFNESSQIPWASVEMAMSRLAQKCELAPAIAAATGRRYLALKAY 169 Query: 229 ---NTRRLNGWFYDIFN-----------IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYG 274 N W + +F ED+ Q++ + +++ Sbjct: 170 FDCNPPSKLHWSFQMFRAKMKPGTKEKLAKPEDYAEMQVNPADNSENLPPEYFEVLASMS 229 Query: 275 LDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS---------REAIDDLYAPLIMGCDIA 325 + R E G++ + + R A +++ D + Sbjct: 230 APKRL-RFEA-GEWASEVSGALWALEDRKAPDGKLMPGIDSLRVASAPEMRRIVVSVDPS 287 Query: 326 GEGGD 330 G GD Sbjct: 288 GTRGD 292 >gi|323340493|ref|ZP_08080748.1| terminase [Lactobacillus ruminis ATCC 25644] gi|323092037|gb|EFZ34654.1| terminase [Lactobacillus ruminis ATCC 25644] Length = 488 Score = 56.9 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 34/299 (11%), Positives = 78/299 (26%), Gaps = 47/299 (15%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ ++ + + + R GKT + + LW + G++++ Sbjct: 60 PWQKNLVKDIMAVDEDGLWVHQKFGYSI----PRRNGKTEIIYILELWGL--HHGLNMLH 113 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 A+ + + + +V K+L + + S+ + Sbjct: 114 TAHRISTSH-SSFEKVKKYLEKMGLTDGEDFNSIRAKGQ------ERIELYETGGVVQFR 166 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232 RT + + DEA ++ T+ +M Sbjct: 167 TRTSNGGL--------GEGFDLLIIDEAQEYTTEQESALKYTVTDSENPMT-VMCGTPPT 217 Query: 233 LNGW--------------------FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE-GIIS 271 + + ++ + + E I + Sbjct: 218 PVSSGTVFTKYRETCLFGKAKYSGWAEWSVSEEKEIDDIDAWYNSNPSLGFHLTERKIEA 277 Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGD 330 G D ++ LG +P + I + A+ +++ L G G D Sbjct: 278 ELGEDKLDHNVQRLGFWPLYNQKSAIAATEWD-ALKVDSLPAFQGKLFAGV---KYGQD 332 >gi|160934785|ref|ZP_02082171.1| hypothetical protein CLOLEP_03660 [Clostridium leptum DSM 753] gi|156866238|gb|EDO59610.1| hypothetical protein CLOLEP_03660 [Clostridium leptum DSM 753] Length = 420 Score = 56.9 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 37/318 (11%), Positives = 78/318 (24%), Gaps = 37/318 (11%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW-MMLWLISTRPGMSII 111 ++Q + + N+ GKT W S Sbjct: 2 KFQEFSIRQLQALSWWCRNSPYAGCDAVICDGAVRSGKTVCMGVSFFAWCFYRFDQQSFA 61 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + L+ L P + ++H L G ++ Y Sbjct: 62 LCGKTIRSLRRNLVT---------PLLPILKELGFTVHGRAGENMLEVTQRGRTNRFY-- 110 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 + + + DE + P + L + ++ N Sbjct: 111 ---LFGGKDEGASAMIQGITLAGILLDEVALMPRSFVEQALARCSVEGSKFWFNC--NPE 165 Query: 232 RLNGWFYDIFNIPLEDWKRY--QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 WFY+ + ++ Y + E Y + I G++ Sbjct: 166 HPRHWFYEEWIQKRDEKNAYYLHFRMEDNPSLSEKMIERYRGLYSGS--FYQRFIEGRWV 223 Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD-----IAGEGGDKTVVVFRRGNIIEH 344 P E + + I+ CD A G + R+ + Sbjct: 224 -AAEGLVYPF-MEEPDRFLPPPEGPFEEFIVSCDYGTVNPASFG-----LWGRKEGVWYR 276 Query: 345 IFDWSAKLIQETNQEGCP 362 + ++ ++ ++G P Sbjct: 277 LKEY----YYDSKRDGGP 290 >gi|302186554|ref|ZP_07263227.1| hypothetical protein Psyrps6_09413 [Pseudomonas syringae pv. syringae 642] Length = 433 Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 32/265 (12%), Positives = 68/265 (25%), Gaps = 37/265 (13%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 P F+ + AG G GKT + + PG++ A + Q+++ + + + Sbjct: 14 LPHKFRAFV-AGFGSGKTWVGCSALSKHFMEWPGVNAGYFAPTYPQIRDIFYPTMEEVA- 71 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + G ++ + + + T + Sbjct: 72 ---------------YEWGLKTKINQANHEVHIYSGRQYRGTVICRSMEKPQTIVGFKVG 116 Query: 194 AVFNDEA----SGTPDIINKSILGFFT--ELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247 DE S + I+ +T+ F + Sbjct: 117 HALVDELDVLTSIKAQQAWRKIIARMRYNLPGLKNGVDVTTTPEGFKFVFLQFVKQMRDK 176 Query: 248 ------WKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 + Q T E + + ++ Y + R + GQF + Sbjct: 177 PALKEMYGLIQASTFDNELNLPDDYIPSLMESYPEQ--LIRAYLNGQFVNLTSGSIYHAY 234 Query: 301 Y--IEEAMSREAIDDLYAPLIMGCD 323 + + PL +G D Sbjct: 235 DRKLNQCFDT---VQAGEPLFIGMD 256 >gi|62327323|ref|YP_224036.1| hypothetical protein BPKS7gp16 [Salmonella phage SS3e] gi|57472357|gb|AAW51219.1| hypothetical protein [Salmonella phage SS3e] Length = 423 Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 36/270 (13%), Positives = 82/270 (30%), Gaps = 14/270 (5%) Query: 81 AISAGRGIGKTTLNAW-MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 A AG G GK+ + +L + I + ++ L + + LS R+ Sbjct: 23 AFVAGFGTGKSEVMCNSALLDSMEGGSDSLIAMYEPTYDLVRLILAPRMEEKLSDWGIRY 82 Query: 140 WFEMQSLSLH-PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + ++ SG + + + +++ ++ + DT H H Sbjct: 83 KYNKSDNIIYTSSGQFGDFVLRTLDNPARIVGYESFRAKIDELDTLNKDHAEHAWNKVIA 142 Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-DWKRYQIDTRT 257 P + I + T + +D + + + ++ Q T + Sbjct: 143 RNRQLP-RTYRPITP------KPANTVSVFTTPEGFRFVHDRWAVKKKPGYEMIQASTTS 195 Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317 + + + + Y + I G+F + + Y S Sbjct: 196 NPFLPEDYVQSLRDTY--PGQLIDAYIDGEFVNLTSGSVY-YAYDRRKNSSRETIQPGET 252 Query: 318 LIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347 L +G D G + V +R + + + Sbjct: 253 LYIGQDF-NVGHMASTVYVQREYVWHAVAE 281 >gi|237737490|ref|ZP_04567971.1| phage terminase [Fusobacterium mortiferum ATCC 9817] gi|229421352|gb|EEO36399.1| phage terminase [Fusobacterium mortiferum ATCC 9817] Length = 447 Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 36/282 (12%), Positives = 75/282 (26%), Gaps = 37/282 (13%) Query: 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136 ++ + GRG K+ A + + P +++ + + + +A++ + L Sbjct: 31 RYRI-VKGGRGSKKSYTTALWYITKLMELPESNLLVVRKVFDTHRGSTFAQLKTAMKRLK 89 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 H ++ + + + + + IT T + + Sbjct: 90 VYHLWKCTTSPMEMT-YIPTGQKIIFRGLDDPLKITSITVDVG-----------YLCWAW 137 Query: 197 NDEASGT-PDIINKSILGFFTELNPNRF---WIMTSNTRRLNGWFYDIF----------- 241 +E + I PN T N W D F Sbjct: 138 FEEMYQIENEDDFNKIDVSIRGAVPNHLFKQITCTFNPWSETHWLNDRFFKGGKEDKDNL 197 Query: 242 -------NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294 + +D + R E +D + IE G + E Sbjct: 198 LTKGLAIHKNTKDILAITTNFRANEFLDEADLNVFNLMKEENPRRFEIEGNGNWGICEGT 257 Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 F + ++ Y +G D G D T ++ Sbjct: 258 VFYRWEVLNFDINTLIKTGKYLTC-IGLD-YGFTNDPTALIV 297 >gi|52079727|ref|YP_078518.1| putative phage terminase (large subunit) [Bacillus licheniformis ATCC 14580] gi|52785096|ref|YP_090925.1| XtmB [Bacillus licheniformis ATCC 14580] gi|319646468|ref|ZP_08000697.1| XtmB protein [Bacillus sp. BT1B_CT2] gi|52002938|gb|AAU22880.1| putative phage terminase (large subunit) [Bacillus licheniformis ATCC 14580] gi|52347598|gb|AAU40232.1| XtmB [Bacillus licheniformis ATCC 14580] gi|317391056|gb|EFV71854.1| XtmB protein [Bacillus sp. BT1B_CT2] Length = 432 Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 28/280 (10%), Positives = 68/280 (24%), Gaps = 55/280 (19%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + G G K+ A ++ + + + + +++ ++ + + L + Sbjct: 24 LVGGYGSSKSYHTALKVVLKLLQ-EKRTALVVREVFETHRDSTFSLFASIIDELGVQ--- 79 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 A + + I + P + ++ +E S Sbjct: 80 ---------KAAQAVSSPMHIRFANGSRIIFKGM---DNPAKLKSV--NNISLIWIEECS 125 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL---------------- 245 K ++G + ++T+N + W Y F Sbjct: 126 EVKYEGFKELIGRLRHPYHRLYMMLTTNPVSQSNWTYRHFFKDERNKRFILDDEVLYKKR 185 Query: 246 ----EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF----- 296 D + + + + + D D+ RI G+F Sbjct: 186 VAVVGDTYYHHSTADDNLFLPKSYLKQLDDMKAYDPDLYRIARKGRFGVNGTRVLPQFEV 245 Query: 297 ------------IPHNYIEEAMSREAIDDLYAPLIMGCDI 324 I + M + A + D Sbjct: 246 MEHEEVMRQISAISNPLKRTGMDFGFEESYNAVVRAAVDP 285 >gi|92117679|ref|YP_577408.1| phage terminase [Nitrobacter hamburgensis X14] gi|91800573|gb|ABE62948.1| phage Terminase [Nitrobacter hamburgensis X14] Length = 504 Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 31/309 (10%), Positives = 69/309 (22%), Gaps = 46/309 (14%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLIS---TRPGMSIICIANS 116 + V + A + GRG KT L+A + L + + I A Sbjct: 26 KLGEFQKRFVRGALDPANMVACLSIGRGNAKTALSAGISLAALMGIVDKQPKREILFAAR 85 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 + + ++ LP R + + Sbjct: 86 NRDQSKLAFTFLVGFIESLPKREREKFTIRR---------GQRLEVEYSG-----NGGGL 131 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL----NPNRFWIMTSNTRR 232 + + DE + S+ I TS Sbjct: 132 ARCIAADGKSILGGAPVLAVLDERAAWEKEKGDSLENSILSGLGKRAGKAILISTSAPDD 191 Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFH--------------------EGIISR 272 N + + + P + + + D + + Sbjct: 192 SNTFSRWMDDPPPGTYVQEHRPPPGLPVDDLESLLIANPGASEGIGASADWLVSQARRAL 251 Query: 273 YGLDSDVARIEILGQFPQQEVN----NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEG 328 S ++ L + + + ++ +S + + I+G D+ G Sbjct: 252 ARGGSALSSFRNLNRNERVASDDRSVLLTTDEWLSAEVSLDDLPPRQGACILGVDLGGSR 311 Query: 329 GDKTVVVFR 337 + Sbjct: 312 SMSAAAFYF 320 >gi|160932962|ref|ZP_02080351.1| hypothetical protein CLOLEP_01804 [Clostridium leptum DSM 753] gi|156868036|gb|EDO61408.1| hypothetical protein CLOLEP_01804 [Clostridium leptum DSM 753] Length = 428 Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 41/284 (14%), Positives = 84/284 (29%), Gaps = 35/284 (12%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + + A HC + GKTT++ W + P ++ + +A Sbjct: 11 QQKILNAPYSHCLEVNEGTP------------RSGKTTVSVSRFAWYLWNTPDLNHMVLA 58 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 ++ Q ++ F + + S + + I++ Sbjct: 59 YNQEQA-----------FKLVMDCDGFGLLHIFNGISRMKHDDFGDHLEIETMKGIKRVY 107 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP-DIINKSILGFFTELNPNRFWIMTSNTRRL 233 + D+ +V+ E + D I ++ + I N Sbjct: 108 YKGAGKADSHKSFTGMSLGSVYFCEINLLHIDAIQEAFRRTCASRIR--WHIADLNPPAP 165 Query: 234 NGW-FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292 + ++FNI W I E I + + + + LG+ + Sbjct: 166 SHPVISEVFNIQDTQWT--HWTIDDNPIITPERKEEIRKTCLKNPYLYKRDWLGE--RCI 221 Query: 293 VNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG--DKTVV 334 I + + I D + + M AG+GG D T + Sbjct: 222 PQGVIYSMFDPQRHILSYIPDSESKIEMY--FAGDGGLSDATSI 263 >gi|126652757|ref|ZP_01724909.1| hypothetical protein BB14905_21478 [Bacillus sp. B14905] gi|126590446|gb|EAZ84565.1| hypothetical protein BB14905_21478 [Bacillus sp. B14905] Length = 420 Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 28/227 (12%), Positives = 66/227 (29%), Gaps = 38/227 (16%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + G G K+ A +L + + + + +++ ++ + + L Sbjct: 23 LVGGYGSSKSYHVALKILLKLLQ-EKRTALVVREVYDTHRDSTFSLFCEIIEDLGLGGKI 81 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + S + ++ + I ++P+ + ++ +E S Sbjct: 82 KTSSSPM------------TVKFPNGSKIIF---RGMDKPEKLKSI--NNISLIWLEECS 124 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-------------------- 241 K +LG F I+++N W Y F Sbjct: 125 EIKYAGFKELLGRLRHPTLKLFIILSTNPVSKGNWVYKHFFKNELEEYFVLDDEELYKQQ 184 Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 I + + + + + E + D D+ RI G+F Sbjct: 185 TIIVNNTYYHHSTADDNLFLPVSYIEQLDEMELYDPDLYRIARKGRF 231 >gi|329996786|ref|ZP_08302582.1| hypothetical protein HMPREF9538_00218 [Klebsiella sp. MS 92-3] gi|328539287|gb|EGF65313.1| hypothetical protein HMPREF9538_00218 [Klebsiella sp. MS 92-3] Length = 490 Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 44/333 (13%), Positives = 82/333 (24%), Gaps = 78/333 (23%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + I R +G TT + L + IA++ K +V LP Sbjct: 48 RNIILKARQLGFTTEVCIIQL-DAALFESAKCALIAHTLNDAKRLFREKVKYAYDKLPA- 105 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + + + + ++ T H Sbjct: 106 --------EIKAANPASNDSAGELVFKKGGSLYVSTSFRG---GTLRYLH--------VS 146 Query: 199 EASGT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-------- 246 E PD + + G F ++ F + S G+F+D + Sbjct: 147 EFGKICAKYPDKAREIVTGAFEAVSTGCFATIESTAEGRAGYFFDYCQTAEKALLQGKPL 206 Query: 247 ---DWKRYQIDTRTVEGIDSGFHE-----------GIISRYG----LDSDVARI---EIL 285 DWK + E + +++G + L Sbjct: 207 SALDWKFFFFSWWKNPQYAIDPVETLPARLLEYFAEMEAKHGVVVNERQKAWYYAKEKTL 266 Query: 286 GQ-------------FPQQEVNNFIPHN---YIEEAMSREAIDDLYAPLIMGCDIAGEGG 329 G F Q + + D+ + P+ DI G Sbjct: 267 GDDMKREYPTIPAEAFQQSVEGAYYAKQFRWLYTNKRIGQIPDNSHLPVHTFWDIGV--G 324 Query: 330 DKTVVVFRRGNIIEHIF-DWSAKLIQETNQEGC 361 D T + F + + ++ E + EG Sbjct: 325 DSTAIWF-----VREVGEEFHVIDYYENSGEGL 352 >gi|251795567|ref|YP_003010298.1| terminase [Paenibacillus sp. JDR-2] gi|247543193|gb|ACT00212.1| Terminase [Paenibacillus sp. JDR-2] Length = 570 Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 43/293 (14%), Positives = 79/293 (26%), Gaps = 42/293 (14%) Query: 3 RLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFP-----WGIKGKPLEHFSQPHRWQLE 57 R ++ D ++ E F+ + WG K LE WQ Sbjct: 38 RKLAADVYDQK--SEYEYSPRHANHAIEFIENYCKHSKGKWGGKSIELE------LWQQA 89 Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL--ISTRPGMSIICIAN 115 F+ A H ++ R GK+T+ + + L+L PG + A Sbjct: 90 FIAATFGFIHKIDGTRKYREVLLVVA--RKNGKSTIASGIGLYLQIADGEPGAEVYACAT 147 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 + Q K +W E + ++ P SL +EL+ ++ K T Sbjct: 148 KKDQAK-LVWLEAKRMVNKSP--------SLRKRIKPLVSELVGKTNDSSFKPLGSDSET 198 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTSNTRRLN 234 H DE D + I+ + + ++T+ Sbjct: 199 LDGLN------VHG-----ALMDEIHAWKDRNLYDVIVDGTSSRDQPLIMMITTAGTIRE 247 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSG----FHEGIISRYGLDSDVARIE 283 F + + E + +R + Sbjct: 248 AVFDLKYEEAEQKLNSLNDVLEEGEADPYEHFLPIIYELDNRSEWTDPECWQK 300 >gi|227494268|ref|ZP_03924584.1| phage terminase protein [Actinomyces coleocanis DSM 15436] gi|226832002|gb|EEH64385.1| phage terminase protein [Actinomyces coleocanis DSM 15436] Length = 468 Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 37/321 (11%), Positives = 72/321 (22%), Gaps = 55/321 (17%) Query: 39 GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98 G PL WQ + V +S R GKT L + Sbjct: 26 EYLGTPLM------PWQQQVANVVT--QIDPNTPGAWKYPTVIVSVPRQAGKTALLRALA 77 Query: 99 LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 + + I+ A + + + +L + Sbjct: 78 VDRMLAYNSHEILMTAQTGKDARKRWKQII-----------------TALDVEKKHDSFK 120 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF---- 214 + + + +Y T H V DEA + ++ Sbjct: 121 VREAQGSERIEYLRRGSYISPFAPTPKSVHGDSLHMVTIDEAWAFDEASGLALEAAINPT 180 Query: 215 -FTELNPNRFWIMT--------------------SNTRRLNGWFYDIFNIPLEDWKRYQI 253 T L+ + T ++ +F + Y Sbjct: 181 QLTILDSQMIVVSTKGTGNSAYLNRLIQQGRQAVTDPMASVAYFEWSADPDAVRENPYSP 240 Query: 254 DT-RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN---NFIPHNYIEEAMSRE 309 + E I + S +A + +E IP E Sbjct: 241 QAISFHPALGHTQDEKKILKLAESSTLASWKRGILNLDEETTGGIAVIPLEIWERLNDGH 300 Query: 310 AIDDLY-APLIMGCDIAGEGG 329 + + + D++ +G Sbjct: 301 PAPPASPSTVEIAFDVSKDGD 321 >gi|126015320|gb|ABN70691.1| terminase [Salmonella phage SETP7] gi|126015322|gb|ABN70692.1| terminase [Salmonella phage SETP11] Length = 423 Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 36/270 (13%), Positives = 81/270 (30%), Gaps = 14/270 (5%) Query: 81 AISAGRGIGKTTLNAW-MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 A AG G GK+ + +L + I + ++ L + + LS R+ Sbjct: 23 AFVAGFGTGKSEVMCNSALLDSMEGGSDSLIAMYEPTYDLVRLILAPRMEEKLSDWGIRY 82 Query: 140 WFEMQSLSLH-PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + ++ SG + + + +++ ++ + DT H H Sbjct: 83 KYNKSDNIIYTSSGQFGDFVLRTLDNPARIVGYESFRAKIDELDTLNKDHAEHAWNKVIA 142 Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-DWKRYQIDTRT 257 P + I + T + +D + + ++ Q T + Sbjct: 143 RNRQLP-RTYRPITP------KPANTVSVFTTPEGFRFVHDRWVVKKNPGYEMIQAPTTS 195 Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317 + + + + Y + I G+F + + Y S Sbjct: 196 NPFLPEDYVQSLRDTY--PGQLIDAYIDGEFVNLTSGSVY-YAYDRRKNSSRETIQPGET 252 Query: 318 LIMGCDIAGEGGDKTVVVFRRGNIIEHIFD 347 L +G D G + V +R + + + Sbjct: 253 LYIGQDF-NVGHMASTVYVQREYVWHAVAE 281 >gi|294340239|emb|CAZ88611.1| putative Phage terminase large subunit [Thiomonas sp. 3As] Length = 581 Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 35/332 (10%), Positives = 84/332 (25%), Gaps = 68/332 (20%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP--GMSI 110 WQ+ + V ++ + I RG GK+ L++ + L++++ G + Sbjct: 104 PWQVFILTTVFGWVNAAGRRRFRRAY---IEVPRGNGKSALSSALALYMLAVDGEMGAEV 160 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 +A + Q + F + S + +G + H Sbjct: 161 YSLATTRDQARIV-----------------FGVAQTMARRSPGFCRRFGVGIGAHNLHVL 203 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNRFWIMTSN 229 + + + + DE + + + + + + W++T+ Sbjct: 204 SSASRFEPLSAE-GSTLDGLNIHFGCVDELHAHKTRTVYDVVETATGKRDNSLLWVITTA 262 Query: 230 TRRLNGWFYDIFN----------------------IPLEDWKRYQIDTRTVEGIDSGFHE 267 G Y++ +DW + Sbjct: 263 GSDRAGICYEVRTGVTRILDGVMEDERQFGIIHGLDEGDDWTHENALIKANPNWGVSIDA 322 Query: 268 GIISRYGLD-------SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD--LYAPL 318 + + + + L + + ++ + D P Sbjct: 323 DAVLSLQAKALQLPSAAAAFQTKHLNVWV-SADSPWMDMRAWDACADTGLDLDAFEGQPC 381 Query: 319 IMGCDIA------------GEGGDKTVVVFRR 338 +G D+A G D V R Sbjct: 382 WIGLDLASKVDIAALVLVFRHGADGFAVFSRH 413 >gi|330977766|gb|EGH77669.1| hypothetical protein PSYAP_13460 [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 384 Score = 56.5 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 32/265 (12%), Positives = 68/265 (25%), Gaps = 37/265 (13%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 P F+ + AG G GKT + + PG++ A + Q+++ + + + Sbjct: 14 LPHKFRAFV-AGFGSGKTWVGCSALSKHFMEWPGVNAGYFAPTYPQIRDIFYPTMEEVA- 71 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + G ++ + + + T + Sbjct: 72 ---------------YEWGLKTKINQANHEVHIYSGRQYRGTVICRSMEKPQTIVGFKVG 116 Query: 194 AVFNDEA----SGTPDIINKSILGFFT--ELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247 DE S + I+ +T+ F + Sbjct: 117 HALVDELDVLTSIKAQQAWRKIIARMRYNLPGLKNGVDVTTTPEGFKFVFLQFVKQLRDK 176 Query: 248 ------WKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 + Q T E + + ++ Y + R + GQF + Sbjct: 177 PALKEMYGLIQASTFDNELNLPDDYIPSLMESYPEQ--LIRAYLNGQFVNLTSGSIYHAY 234 Query: 301 Y--IEEAMSREAIDDLYAPLIMGCD 323 + + PL +G D Sbjct: 235 DRKLNQCFDT---VQAGEPLFIGMD 256 >gi|301382086|ref|ZP_07230504.1| hypothetical protein PsyrptM_05618 [Pseudomonas syringae pv. tomato Max13] gi|302061639|ref|ZP_07253180.1| hypothetical protein PsyrptK_16760 [Pseudomonas syringae pv. tomato K40] gi|302131811|ref|ZP_07257801.1| hypothetical protein PsyrptN_10492 [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 433 Score = 56.5 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 32/265 (12%), Positives = 68/265 (25%), Gaps = 37/265 (13%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 P F+ + AG G GKT + + PG++ A + Q+++ + + + Sbjct: 14 LPHKFRAFV-AGFGSGKTWVGCSALSKHFMEWPGVNAGYFAPTYPQIRDIFYPTMEEVA- 71 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + G ++ + + + T + Sbjct: 72 ---------------YEWGLKTKINQANHEVHIYSGRQYRGTVICRSMEKPQTIVGFKVG 116 Query: 194 AVFNDEA----SGTPDIINKSILGFFT--ELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247 DE S + I+ +T+ F + Sbjct: 117 HALVDELDVLTSIKAQQAWRKIIARMRYNLPGLKNGVDVTTTPEGFKFVFLQFVKQLRDK 176 Query: 248 ------WKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 + Q T E + + ++ Y + R + GQF + Sbjct: 177 PALKEMYGLIQASTFDNELNLPDDYIPSLMESYPEQ--LIRAYLNGQFVNLTSGSIYHAY 234 Query: 301 Y--IEEAMSREAIDDLYAPLIMGCD 323 + + PL +G D Sbjct: 235 DRKLNQCFDT---VQAGEPLFIGMD 256 >gi|268608029|ref|ZP_06141759.1| phage terminase large subunit [Ruminococcus flavefaciens FD-1] Length = 415 Score = 56.5 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 29/240 (12%), Positives = 59/240 (24%), Gaps = 24/240 (10%) Query: 87 GIGKTTLNA-WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 GKT + +LW ++ G + + T L+ + + L ++ Sbjct: 35 RSGKTLSMSLGFVLWASASFDGGAFAICGKTVTSLRRNVITPLLPMLRDYGFTCIEKVSR 94 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 + + + + VF DEA+ P Sbjct: 95 SYIDLTFLGHTNR--------------FYLFGGRDEGSAALIQGMTLSGVFLDEAALMPR 140 Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR--YQIDTRTVEGIDS 263 + L + ++ N WFY + E+ + Sbjct: 141 SFVEQALARCSVSGSKMWFNC--NPDNPAHWFYTEWIKKAEEKHALYIHFTMDDNPSLSD 198 Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323 + Y +LG++ P E + D ++ CD Sbjct: 199 ALKQRYKRLYSG--AFYDRFVLGKW-TASQGVVYP--MFSEKKHVYSGDVECERFVISCD 253 >gi|9632897|ref|NP_049926.1| putative terminase large subunit [Streptococcus phage Sfi19] gi|5524003|gb|AAD44056.1|AF115102_4 orf623 gp [Streptococcus phage Sfi19] Length = 623 Score = 56.5 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 42/331 (12%), Positives = 97/331 (29%), Gaps = 51/331 (15%) Query: 44 PLEHFSQPHR---WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 P +P + WQ + + ++N + +S GRG GKT L A + + Sbjct: 88 PNVDTGEPTKLMAWQKFILCMLFGWRNANGGKRFS---RAIVSVGRGQGKTYLMAILTAY 144 Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 + ++N + + + + + +K L + +Q+ E Sbjct: 145 SYFIE----SLGLSNQDYLVTSINFKQTNKLLGYIKSMMKQIIQNEPFKSLANETE---L 197 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTEL 218 + D ++ + H DE D ++K + G Sbjct: 198 GLHSDQVIMKANNNVLRAISAESGQYD-SFHFTTAIFDEIGEIETRDAVSKIVSGQVKVP 256 Query: 219 NPNRFWIMTSNTR----------------------RLNGWFYDIFNIPLEDWKRYQIDT- 255 N I T+ + + +++ + Sbjct: 257 NRQFIQISTAYPNPSVPFREDQRIMQQAMEDDDSRDADTYLCLVWSQDNLEEVFKPETWA 316 Query: 256 RTVEGIDSGFHEGIISRYGLDS----------DVARIEILGQFPQQEVNNFIPHNYIEEA 305 ++ +D + + +D +++ + + + N+F+ IE A Sbjct: 317 KSNPLLDLEQERENLMKGLMDKRDSDLLSGNIADFQVKNMNCWLLADSNSFLDLKDIENA 376 Query: 306 MSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 + E + +G D + D T + F Sbjct: 377 VIPEFDR-RGKRVYVGLDASMF-SDNTAIGF 405 >gi|66046030|ref|YP_235871.1| hypothetical protein Psyr_2794 [Pseudomonas syringae pv. syringae B728a] gi|63256737|gb|AAY37833.1| Protein of unknown function DUF264 [Pseudomonas syringae pv. syringae B728a] Length = 433 Score = 56.5 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 32/265 (12%), Positives = 68/265 (25%), Gaps = 37/265 (13%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 P F+ + AG G GKT + + PG++ A + Q+++ + + + Sbjct: 14 LPHKFRAFV-AGFGSGKTWVGCSALSKHFMEWPGVNAGYFAPTYPQIRDIFYPTMEEVA- 71 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + G ++ + + + T + Sbjct: 72 ---------------YEWGLKTKINQANHEVHIYSGRQYRGTVICRSMEKPQTIVGFKVG 116 Query: 194 AVFNDEA----SGTPDIINKSILGFFT--ELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247 DE S + I+ +T+ F + Sbjct: 117 HALVDELDVLTSIKAQQAWRKIIARMRYNLPGLKNGVDVTTTPEGFKFVFLQFVKQLRDK 176 Query: 248 ------WKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 + Q T E + + ++ Y + R + GQF + Sbjct: 177 PALKEMYGLIQASTFDNELNLPDDYIPSLMESYPEQ--LIRAYLNGQFVNLTSGSIYHAY 234 Query: 301 Y--IEEAMSREAIDDLYAPLIMGCD 323 + + PL +G D Sbjct: 235 DRKLNQCFDT---VQAGEPLFIGMD 256 >gi|321312115|ref|YP_004204402.1| putative phage-related terminase large subunit [Bacillus subtilis BSn5] gi|320018389|gb|ADV93375.1| putative phage-related terminase large subunit; skin element [Bacillus subtilis BSn5] Length = 431 Score = 56.5 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 28/227 (12%), Positives = 63/227 (27%), Gaps = 38/227 (16%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + G G K+ A ++ + + + I +++ ++ + +S L H Sbjct: 23 LVGGYGSSKSYHVALKIILKLLK-EKRTALVIREVYDTHRDSTFSLFDELVSDLKLDHIV 81 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 S + + + I ++P + ++ +E S Sbjct: 82 RCVSSPM------------QIRFSNGSRIIFKGM---DKPAKLKSI--NNISLIWIEECS 124 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-------------------- 241 K +LG I+++N + W + F Sbjct: 125 EVKYEGFKELLGRLRHPTLPLHMILSTNPVGEDNWTFKHFFKDDREKRFVLDDKELYEKR 184 Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 I D + + + + + D D+ RI G F Sbjct: 185 IIVSNDTYYHHSTADDNLFLPESYVQQLEELKEYDPDLYRIARKGHF 231 >gi|14251081|ref|NP_116438.1| T89 [Tupaiid herpesvirus 1] gi|12656019|gb|AAK00707.1| viral terminase [Tupaiid herpesvirus 1] gi|14210775|gb|AAK57138.1| T89 [Tupaiid herpesvirus 1] Length = 673 Score = 56.5 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 70/237 (29%), Gaps = 19/237 (8%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GKT ++ +L+ G+SI +A+ + + L + + H E + Sbjct: 215 PRRHGKTWFTVPIICFLLKNVQGISIGYVAHQKHVSQFVLKEVEFRCRRLFGRTHTVENK 274 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + I T + + DEA Sbjct: 275 DNVISI-----------------DHPIAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK 317 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTVEGIDS 263 +ILGF + +I ++NT F + N P + + S Sbjct: 318 KDAFNTILGFLAQNTTKIIFISSTNTTTDATCFLTKLNNSPFDMLNVISYVCEEHIQVFS 377 Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIM 320 + I I + +Q N F+ ++++E M PLI Sbjct: 378 EKPDATACPCYRLHKPTFITINSE-VRQTANMFLAGSFMDEIMGGTNKIVEDTPLIT 433 >gi|260664072|ref|ZP_05864925.1| terminase-large subunit [Lactobacillus jensenii SJ-7A-US] gi|260561958|gb|EEX27927.1| terminase-large subunit [Lactobacillus jensenii SJ-7A-US] Length = 571 Score = 56.5 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 48/307 (15%), Positives = 97/307 (31%), Gaps = 61/307 (19%) Query: 69 NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP----GMSIICIANSETQLKNTL 124 ++S+ K IS R GKT L A + L+++ + G I C AN Q K Sbjct: 89 RKSDSHRKFKKMFISMARKNGKTILVAGIALYILLYQKYPVRGKQIYCAANKRDQAK-VA 147 Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP--D 182 + ++ +L L F + + + +T S +P + Sbjct: 148 FNYINNFLVPLRSDSPFVKRKTQMK-----------------RDEITDAKTGSFIKPLSN 190 Query: 183 TFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN-TRRLNGWFYD-- 239 G + DE + + DI + + + + ++ S + +NGWF++ Sbjct: 191 DKNGIQGLNTTLAIFDEQADSNDITVYDAVEKSSRMQKDPLMLLISTVSPNINGWFHEMI 250 Query: 240 --------------------IFNIPLEDWKRYQIDT-RTVEGIDSGFHEGII-------- 270 + ED + ++ + + Sbjct: 251 YQYVEQMVKGDVVDDETMVLWYEQESEDEIADTANWIKSNPILYDKDIRETLLPTLIQDW 310 Query: 271 --SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD-LYAPLIMGCDIAGE 327 ++ A+I + Q N++I + + D + +G D+A Sbjct: 311 KTAQAMGRETKAKIYNFNMWQQANENSYIKVQDW-ANIKVDKTPDLYGREVYIGMDLART 369 Query: 328 GGDKTVV 334 G D + V Sbjct: 370 G-DLSAV 375 >gi|216905967|ref|YP_002333563.1| gp2 [Bacillus phage TP21-L] gi|215809694|gb|ACJ70528.1| gp2 [Bacillus phage TP21-L] Length = 439 Score = 56.5 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 29/279 (10%), Positives = 75/279 (26%), Gaps = 38/279 (13%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + GR GK+ + +L + +S + + + + +++ ++ + + +L + Sbjct: 31 RYVLKGGRASGKSYFIPFRIL-MDIMEYPISWLVLRKVQNTIVRSVFEQLKEAMVILGIK 89 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG--MAVF 196 H F L + + E P+ + M ++ Sbjct: 90 HLFRCIPSRLIME-YKPRGNKIYF-------------LGCEEPERIKSIKDAEFPIMGMW 135 Query: 197 NDEASGT-PDIINKSILGFFTELNPNRF-------------WIMTSNTRRLNGWFYDIFN 242 +E + I + + N + + + Sbjct: 136 VEEIGEFRKEEEISIIEKSVLRGEFEIKPEHRPELPNYEYTFFYSYNPPKRRAHWLNKKY 195 Query: 243 IPL---EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299 ++ + + F+E ++ R E LG+ +P Sbjct: 196 NSSFIPDNTHVNHSTYLDNDYLTKAFYEEAEIEKKMNPLKYRWEYLGEAIGSG---VVPF 252 Query: 300 NYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338 + I A + + + G D G D Sbjct: 253 DNIVSAEITDEQISQFDNIRQGIDF-GYATDPLAFGRMH 290 >gi|282554628|ref|YP_003347645.1| putative DNA maturase B [Klebsiella phage KP34] gi|262410461|gb|ACY66725.1| putative DNA maturase B [Klebsiella phage KP34] Length = 618 Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 24/197 (12%), Positives = 55/197 (27%), Gaps = 31/197 (15%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEA 61 PR I +++ + L A + F+ F F + Sbjct: 24 PRSIPKEEREDIALM----MAAALSDFREFAYIGM----------RFLGFTL--TDMQAD 67 Query: 62 VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121 + + ++A RG K+TL A +W + I+ ++ +E Q Sbjct: 68 IAEYMQKGPRKRM-------VAAQRGEAKSTLAALYAVWRLIQDQSCRILIVSGAEKQAS 120 Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 + + + L P + + + + + + K ++ C + Sbjct: 121 DVA-NLIIRMLETWPLLCYLKADPTRGDRTSFEGYDVHCDLKPLDKSASVACVGITA--- 176 Query: 182 DTFVGPHNTHGMAVFND 198 + D Sbjct: 177 ----SLQGKRADLLIPD 189 >gi|168236907|ref|ZP_02661965.1| putative phage terminase, large subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194737485|ref|YP_002117149.1| putative phage terminase, large subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194712987|gb|ACF92208.1| putative phage terminase, large subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289995|gb|EDY29354.1| putative phage terminase, large subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 558 Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 41/344 (11%), Positives = 91/344 (26%), Gaps = 58/344 (16%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSI 110 WQ + +V +S+ ++ + +G+G GK+ L A + L+ + P + Sbjct: 67 PWQCFIVGSVFGWKNSDGYRRFRMVY---VESGKGSGKSPLAAGIALYCLVADKEPRAEV 123 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 A + Q L+ + + P A+ + +S G + Sbjct: 124 YAAATKKDQAM-ILFRDAVAMVDQSP----------------ALAQRINKSGGAGKEWNL 166 Query: 171 ITCRTYSEERP-DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 +T S RP + G DE + ++ T+ M +N Sbjct: 167 AFLQTGSFFRPISSDDGQSGPRPHCALIDEIHEHKNNQVVEMMRAGTKGRRQALIFMITN 226 Query: 230 TR-RLNGWFYDIFNIPL---------------------------EDWKRYQIDTRTVEGI 261 + YD ++ + + Sbjct: 227 SGHDKTSVCYDYHEYGRKVAEGSVDDDSFFSFICSLDEGEDPFKDETCWKKANPSLGHTF 286 Query: 262 DSGFHEG---IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR-EAIDDLYAP 317 + + R Q+ N ++ + + + Sbjct: 287 TERYLREQVTQARGMPSKESIVRRLNFCQWVD-ADNPWMSSDVWMGCEEDFDLQELRGEE 345 Query: 318 LIMGCDIAGEGGDKTVVVFRRGNIIEHIFD-WSAKLIQETNQEG 360 G D++G D T + + + + W+ K + Sbjct: 346 CYGGLDLSGS-RDLTALALFFPKKRKLVVEFWTPKDTLTDRAKT 388 >gi|313114059|ref|ZP_07799612.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623629|gb|EFQ07031.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 443 Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 44/315 (13%), Positives = 78/315 (24%), Gaps = 63/315 (20%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN-----AWMMLWLISTRP 106 WQ + ++ S + R GK+ L A M+L+ Sbjct: 12 DPWQSDILDDWMSRTVSGKWAAPTAGGSV----PRQNGKSLLVQGRSEAGMLLF------ 61 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 ++I A+ + + E+ R +FE L H + L + + + S Sbjct: 62 NETVIYTAHLQKTATE-TFEEM---------RAFFESPKLRRHVAEIKTALGREQIILKS 111 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226 G HG + DEA + S L + + I Sbjct: 112 GARIKFLARTR-------NGGRGQHGDLLIFDEAQELDETAQGSFLPAISASLNPQT-IY 163 Query: 227 TSNTRRLN--GWFYDIFNIPLEDWKRYQIDTRT--VEGIDSGFHEGII------------ 270 + G + D + + V I Sbjct: 164 VGTPPGPDAVGTVFRALRKRALDGEAKKAAWFEFSVPEIGDVKDPARWAATNPALGRRIQ 223 Query: 271 ------SRYGLDSDVARIEILGQF---PQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMG 321 LD D E LG + + ++ I E S + + + Sbjct: 224 LSTIEGEAEQLDPDTFARERLGWWSPEITEHLDYAIDRTAWEACASEDEKPEGKTAYGI- 282 Query: 322 CDIAGEGGDKTVVVF 336 D + V Sbjct: 283 ----KFSADGSAVCL 293 >gi|50954217|ref|YP_061505.1| phage-related terminase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950699|gb|AAT88400.1| phage-related terminase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 361 Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 32/311 (10%), Positives = 75/311 (24%), Gaps = 50/311 (16%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM-MLWLIST 104 + + WQ + + + TI +S R + KT + + + ++ L + Sbjct: 41 DFGDEFDVWQQGASKLILA--KRANGDYAATIGGITLSIPRQVAKTYMVSRINIVALCTI 98 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 P ++++ A+ T R + +S++ A EQ + Sbjct: 99 FPNLTVLWTAHRTRTSTKTF----------ASLRGFVGRKSVAPFVRNVRAVNGEQEIEF 148 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN--R 222 + + DEA + + ++ + Sbjct: 149 TNGSVIMFGAREQGFGRG------FDEVDIEVFDEAQILTEKALEDMVAATNQSRFPAGA 202 Query: 223 FWIMTSNTRRLNGWFYDIFNIPL-------EDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275 R +D + T D I + Sbjct: 203 LLFFMGTPPRPVDPGEAFKQRRREALLGGSDDAVYIECSADTDADPDDREQWEIANPSYP 262 Query: 276 D----------------SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI--DDLYAP 317 + + E LG + + + +I + + D Sbjct: 263 HRTPLKSMLRLRKNLPSDESWKREALGIW---DTDQVGSR-FISASRWADLEGIPDPDES 318 Query: 318 LIMGCDIAGEG 328 G + +G Sbjct: 319 PAYGVAFSQDG 329 >gi|326336497|ref|ZP_08202667.1| terminase large subunit protein [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691370|gb|EGD33339.1| terminase large subunit protein [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 390 Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 31/255 (12%), Positives = 70/255 (27%), Gaps = 31/255 (12%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 + KT ++ T P + + + LK +++ + + L L Sbjct: 23 VSAQGSSRSSKTFNILIWLIIYCLTYPKTRLSIVRATLPALKGSVFVDFKEILYKLNVFD 82 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + + + T D+ ++ +E Sbjct: 83 EDSINKSEMIYTFP------------NGSWVEFFST------DSEQKLRGRKRDVLYVNE 124 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 A+ I + + T+ F I+ N + + + + Sbjct: 125 ANELKFIEFQQLKMRTTQ-----FTIVDYNPSF-SNDHWLCELNKDPRTYHFISTYKDNP 178 Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319 ++ + I S + + ++ LGQ I E+ E I Sbjct: 179 FLEQTVIDEIESLQHKNRSLWQVYGLGQ------QAMIEGLIFEKVTIVEEIPIWAKKRY 232 Query: 320 MGCDIAGEGGDKTVV 334 +G D G D T + Sbjct: 233 LGLDF-GFTHDPTAI 246 >gi|291457608|ref|ZP_06596998.1| putative phage terminase, large subunit [Bifidobacterium breve DSM 20213] gi|291380661|gb|EFE88179.1| putative phage terminase, large subunit [Bifidobacterium breve DSM 20213] Length = 537 Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 36/323 (11%), Positives = 74/323 (22%), Gaps = 62/323 (19%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR------- 105 WQ + K + R GKTTL + W + Sbjct: 56 PWQQWLLVHALELLEDGSYRF----RKVIVLVARQNGKTTLMGVLAAWWLFVDSNKHPDR 111 Query: 106 -PGMSIICI-ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163 P + + + A + +V +W + P + Q Sbjct: 112 VPPVKFLVVGAAQTLDNAKGPYNQVKEWCNPQPS------TDEEADLVIPDLAAMTQKFV 165 Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNR 222 + I R+ + V DE D ++ + ++ Sbjct: 166 NTNGEEAIITRSKARYIVRADKNIRAKSAARVVFDELREQHNDDGWNAVSQTTKAVWSSQ 225 Query: 223 FWIMT-------------------------------SNT---------RRLNGWFYDIFN 242 W ++ N G+F Sbjct: 226 LWGISNAGDYRSVALRKQVDKGRKLVDEWTRLSADGGNPADVFTSGEQDGSFGYFEWSAP 285 Query: 243 --IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 P++D + ++ G+ R E+L Q+ ++ FI Sbjct: 286 DKCPVDDADAIRHANPSLGYGPMTVMSVRSDIDGMTEAAFRTEVLCQWVTADIIPFIGPK 345 Query: 301 YIEEAMSREAIDDLYAPLIMGCD 323 + + +++ D Sbjct: 346 MWASGIDSRSTIPDGNRVVLSVD 368 >gi|288934668|ref|YP_003438727.1| phage terminase large subunit [Klebsiella variicola At-22] gi|288889377|gb|ADC57695.1| phage terminase large subunit [Klebsiella variicola At-22] Length = 490 Score = 56.1 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 44/333 (13%), Positives = 82/333 (24%), Gaps = 78/333 (23%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + I R +G TT + L + IA++ K +V LP Sbjct: 48 RNIILKARQLGFTTEVCIIQL-DAALFESAKCALIAHTLNDAKRLFREKVKYAYDKLPA- 105 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + + + + ++ T H Sbjct: 106 --------EIKAANPASNDSAGELVFKKGGSLYVSTSFRG---GTLRYLH--------VS 146 Query: 199 EASGT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-------- 246 E PD + + G F ++ F + S G+F+D + Sbjct: 147 EFGKICAKYPDKAREIVTGAFEAVSTGCFATIESTAEGRAGYFFDYCQTAEKALLQGKPL 206 Query: 247 ---DWKRYQIDTRTVEGIDSGFHE-----------GIISRYG----LDSDVARI---EIL 285 DWK + E + +++G + L Sbjct: 207 SALDWKFFFFSWWKNPQYAINPVEPLPARLLEYFAEMEAKHGIVVNERQKAWYYAKEKTL 266 Query: 286 GQ-------------FPQQEVNNFIPHN---YIEEAMSREAIDDLYAPLIMGCDIAGEGG 329 G F Q + + D+ + P+ DI G Sbjct: 267 GDDMKREYPTIPAEAFQQSVEGAYYAKQFRWLYTNKRIGQIPDNSHLPVHTFWDIGV--G 324 Query: 330 DKTVVVFRRGNIIEHIF-DWSAKLIQETNQEGC 361 D T + F + + ++ E + EG Sbjct: 325 DSTAIWF-----VREVGEEFHVIDYYENSGEGL 352 >gi|254500214|ref|ZP_05112365.1| hypothetical protein SADFL11_250 [Labrenzia alexandrii DFL-11] gi|254505306|ref|ZP_05117454.1| hypothetical protein SADFL11_PLAS4 [Labrenzia alexandrii DFL-11] gi|222436150|gb|EEE42832.1| hypothetical protein SADFL11_PLAS4 [Labrenzia alexandrii DFL-11] gi|222436285|gb|EEE42964.1| hypothetical protein SADFL11_250 [Labrenzia alexandrii DFL-11] Length = 627 Score = 56.1 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 18/128 (14%) Query: 24 CVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKC--- 80 SF F+ R W G P +P R Q E + S + Sbjct: 28 LYESFTAFLDRV--WEHLGLP-----EPTRAQYEIAHRLQYGADSLEWEKLSEEERQVRH 80 Query: 81 ------AISAGRGIGKTTLNAWMMLWLISTRP-GMSIICIANSETQLKNTLWAEVSKWLS 133 I A RG+GK+ + A ++WL+ P ++ ++ S + K + + + Sbjct: 81 KGLREDIIRAFRGLGKSYITAAFVIWLLMRNPKDEKVMVVSASSGKAKQFV-DQTKGIIQ 139 Query: 134 MLPHRHWF 141 +P W Sbjct: 140 SMPEIRWL 147 >gi|148912857|ref|YP_001293436.1| hypothetical protein ORF029 [Pseudomonas phage 73] Length = 551 Score = 56.1 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 23/186 (12%), Positives = 55/186 (29%), Gaps = 17/186 (9%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P +Q E ++ + + ++ G GK+ + A + + P I Sbjct: 7 PRWYQDEAEYSIFDYFQRGGVGNP------VVAMPTGTGKSVVIANFIRRIFGYWPNQRI 60 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + + + + ++ +S W + + + S + + + + I Sbjct: 61 MMLTHVKELIEQNAEKLMSIWPTAPMGIYSAGLNSRDMIMPIVFGGVQSVAPAIKRGLEE 120 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI---INKSILGFFTELNPNRFWIMT 227 R H + DE D + I+ ++NP+ I Sbjct: 121 DDGRPA--------HLRHFGWRDLLLIDECHLLSDKEDSHYQYIIAELRKINPHLKVIGF 172 Query: 228 SNTRRL 233 + T Sbjct: 173 TATPYR 178 >gi|254820336|ref|ZP_05225337.1| hypothetical protein MintA_10426 [Mycobacterium intracellulare ATCC 13950] Length = 478 Score = 56.1 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 41/311 (13%), Positives = 77/311 (24%), Gaps = 54/311 (17%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 WQ + + + + + ++ R GK + + L+ + I+ Sbjct: 44 DDWQGRIVRGI---LRESGGTWSCSQAGVVVA--RQSGKGQILLALELFGLYEL-DEQIL 97 Query: 112 CIAN---SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 A+ + + LW + + H AE +E G Sbjct: 98 HTAHAVKTSSDAFRRLWDVIQ--------SDADLAGRVRRHSQMIGAEYVELDTGA---- 145 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF-TELNPNRFWIMT 227 T + DEA P ++ + + + T Sbjct: 146 --RIAFTTRSASAG-----RGLSIDRLIVDEAEDLPAAEVGALQPTVYSRPHAQSLFFGT 198 Query: 228 S---------------------NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFH 266 S N R + + ++D + V Sbjct: 199 SPGPMHDSEAFATMRKSAHDGLNPRLGWAEWCAEWGDDIDDHDVWIRTNPAVATGRVPLQ 258 Query: 267 EGIISRYGLDSDVARIEILGQF-PQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325 R L D R E L + P + E +++ + +G D A Sbjct: 259 AIADDRAVLPPDTFRAERLSMWVPHASGDQVFDPAVWEALTDPDSVPIAD--VAIGVD-A 315 Query: 326 GEGGDKTVVVF 336 G DK V Sbjct: 316 GPSRDKATVCV 326 >gi|170739523|ref|YP_001768178.1| hypothetical protein M446_1219 [Methylobacterium sp. 4-46] gi|168193797|gb|ACA15744.1| conserved hypothetical protein [Methylobacterium sp. 4-46] Length = 491 Score = 56.1 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 41/294 (13%), Positives = 70/294 (23%), Gaps = 30/294 (10%) Query: 60 EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119 A+ N + + GR GKT A + + ++ A E Sbjct: 46 RAIYAALTGRENEPGAPVEEVWAIIGRRGGKTRAMAVLAAYFAVLCDWDDVL--APGERG 103 Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 + A + L + + E + + E Sbjct: 104 SLPLIAASTYQAGKAL----------SYIRGIFDHVEGFAGHVTGQTADTLSLDTGVDIE 153 Query: 180 -RPDTFVGPHNTHGMAVFNDEASGT--------PDIINKSILGFFTELNPNRFWIMTSNT 230 RP +F +A DE + I ++ + S+ Sbjct: 154 VRPASFRTSRGGTLVAALCDEVAFWRVEGSANPDREILAALRPGLATTGGPL--CIISSP 211 Query: 231 RRLNGWFYDIFNI---PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287 G Y F P D + + + Y D+ AR E + Sbjct: 212 YAKRGELYGAFRRDFGPEGDPAVLVAKAPSRTMNPTLAESVVARAYARDAAAARAEYGAE 271 Query: 288 FPQQEVNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGE-GGDKTVVVFRR 338 F + FI +E + D AG G D + Sbjct: 272 FRDDVED-FISIETVEACTVPASENLPVERVRYHAFVDPAGGSGKDSMTLAIAH 324 >gi|229815293|ref|ZP_04445628.1| hypothetical protein COLINT_02339 [Collinsella intestinalis DSM 13280] gi|229809073|gb|EEP44840.1| hypothetical protein COLINT_02339 [Collinsella intestinalis DSM 13280] Length = 474 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 41/327 (12%), Positives = 77/327 (23%), Gaps = 51/327 (15%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 +F P WQ ++ + + ++ IS R GK+ + + Sbjct: 31 YFGAPMPWQPHLLDVMLATDGDGMYVNSE----VGISVPRQNGKSWVVRSRCFDGLMR-- 84 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 G I+ + P E + L + + + Sbjct: 85 GEKILYTCHHGDTSDEMFQEL------KAPFEDDEEEELRDLLKYVRKTNGKQAIVLNNG 138 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW-I 225 T RT S + DEA D+ ++L + + I Sbjct: 139 GTIRFTTRTDSGG--------RGKSFDVLIIDEAQELTDMQQAALLPAISAGKMHNPQTI 190 Query: 226 MTSNTRR----LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI------------ 269 + +I D + ++ E D Sbjct: 191 YLGTPPGPKCLGTVFANLRKSILKGDSQMAWMEWGATEIGDKNDRARWYECNPSLGIVLE 250 Query: 270 -----ISRYGLDSDVARIEILGQFPQQEV--NNFIPHNYIEEAMSREAIDDLYAPLIMGC 322 + D E LG + N +P + R+A L G Sbjct: 251 LKAVESECNQMAPDTFARERLGWWADDAEVANPALPPGLWAKREVRKA--MAGGKLAFGV 308 Query: 323 DIAGEGGDKTVV----VFRRGNIIEHI 345 + +G + R G + Sbjct: 309 KFSTDGR-TAAISWARAVRGGPSYVEL 334 >gi|239631909|ref|ZP_04674940.1| terminase large subunit [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526374|gb|EEQ65375.1| terminase large subunit [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 630 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 50/369 (13%), Positives = 103/369 (27%), Gaps = 62/369 (16%) Query: 15 LHEMLMHAECVLSF------------KNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAV 62 L ++ E SF NF ++ WQ + + Sbjct: 58 LQDLKRSLEGSHSFPFNYDLNKVSNILNFAAIC-----PDVDTGEPTKLMPWQAFILSQL 112 Query: 63 DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN 122 + + + +S RG GKT + + + + + ++N + + + Sbjct: 113 IGWRNQDGGKRFS---RAIVSVARGQGKTYMMSIIACYSYLVE----SLGLSNQDFLVAS 165 Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182 + + K + + + L S+ D + Sbjct: 166 INYKQTGKIYGYIKGMMKKVIANEPFRSLAAEVGLDTHSIQSDQILMRNNNNVLRPISHE 225 Query: 183 TFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240 + + H DE D I+K I G N I T+ + + D Sbjct: 226 SGQYD-SYHFTTAIFDEIGEVESRDKISKIISGQVKVKNRQFVQISTAYPKPGVPFHEDQ 284 Query: 241 FNIPLEDWKRYQIDTRT-----------------------VEGIDSGFHEGIISRY---G 274 I + Y+ D T +D ++ + Sbjct: 285 KMIQQAMEQDYKRDADTYLGLIWAQDSLDETFKPETWVKSNPLLDLPDQREVLMQGLVDK 344 Query: 275 LDSDV-------ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE 327 DSD+ + + L + Q+ ++++ IE A+ D + +G D + Sbjct: 345 RDSDMLSNNIGDFQNKNLNMWLQESSDSYLKLADIERAIIPSFDID-GRDVYIGFDYSMF 403 Query: 328 GGDKTVVVF 336 D T + F Sbjct: 404 -SDNTALAF 411 >gi|118443517|ref|YP_878252.1| PBSX family phage terminase large subunit [Clostridium novyi NT] gi|118133973|gb|ABK61017.1| phage terminase, large subunit, PBSX family [Clostridium novyi NT] Length = 419 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 30/263 (11%), Positives = 71/263 (26%), Gaps = 25/263 (9%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGM----SIICIANSETQLKNTLWAEVSKWLSMLP 136 + GRG K++ + +++ + + + + L+ +++ ++ + L Sbjct: 32 WLKGGRGSTKSSFISIEIIFNMMKDSKQGKVTNAVIFRRVKDTLRGSVFEQMLWAIEKLK 91 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 +E+ L + + G D+ + + + Sbjct: 92 CESEWEVNYSPLKLTYKPLGTVILFKGADNPLKMKSIKVAKGYI---------KYIWYEE 142 Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN-GWFYDIFNIPLEDWKRYQIDT 255 DE G I ++I P + N W +D + + Sbjct: 143 VDEFEGYDKI--RNINQSLMRGGPKFCVFYSFNPPESQRNWANMEVLETRKDKLVHHSNY 200 Query: 256 RTVE--GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 V + F ++ + LG + I + + Sbjct: 201 LGVPREWLGKQFILEAEHLKKVNHLKYEHDYLGA-VTGTGGEVFTNVTIRK--ITDEEIA 257 Query: 314 LYAPLIMGCDIAGEGGD---KTV 333 + + G D G D TV Sbjct: 258 SFDRVHRGLDF-GYASDPLHYTV 279 >gi|167034415|ref|YP_001669646.1| hypothetical protein PputGB1_3419 [Pseudomonas putida GB-1] gi|166860903|gb|ABY99310.1| protein of unknown function DUF264 [Pseudomonas putida GB-1] Length = 433 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 30/272 (11%), Positives = 70/272 (25%), Gaps = 37/272 (13%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 AG G GKT + + + P + A + Q+++ + + Sbjct: 23 AGFGSGKTWVGCAALCKHVWEWPRIDSGYFAPTYPQIRDIFFPTIE-------------- 68 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + ++ + S + + DE Sbjct: 69 EVAFDWGLKVKTKESDKEVEFYSGGQYRSTTICRSM--EKPQTIVGFKIGHALVDELDVL 126 Query: 204 P----DIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIF-------NIPLEDWKRY 251 P + + I+ + + + + T + Y F + Sbjct: 127 PALKAEHAWRKIIARMRYNVPGLKNGVDVTTTPEGFKFVYQQFVKQLREKPALQGMYGLV 186 Query: 252 QIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY--IEEAMSR 308 Q T E + + ++ Y + + + GQF + + Sbjct: 187 QASTFDNELNLPPDYIPSLMESY--PAQLILAYLNGQFVNLNAGSIYHAYDRKLNSCFDT 244 Query: 309 EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGN 340 + PL +G D G + +R + Sbjct: 245 ---VEPGEPLFIGMDF-NVGKMAAITHVKRAD 272 >gi|296112059|ref|YP_003622441.1| putative terminase large subunit phage [Leuconostoc kimchii IMSNU 11154] gi|295833591|gb|ADG41472.1| putative terminase large subunit phage [Leuconostoc kimchii IMSNU 11154] Length = 432 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 31/258 (12%), Positives = 76/258 (29%), Gaps = 23/258 (8%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 GR K++ + + + + P +++C LK +++ ++ L L Sbjct: 22 NIIEKGGRASTKSSGISIYLAMGMMSDPDANVVCYRKVAGNLKRSVYEQIKWALDELHVS 81 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 F ++ + + + + +F + ++ + Sbjct: 82 WLFRFKTSPMEI-----------IDRRNGSGFYFSGVDDPSKQKSFKIAKG-YVRWLWFE 129 Query: 199 EASGTPD-IINKSILGFFTELNPNRFW----IMTSNTRR-LNGWFYDIFNIPLE--DWKR 250 EA+ + ++ +T + I + N R W + + D+ Sbjct: 130 EATEFSNFTEIHTVQLSYTRQKLPKGMQVVTIFSYNPPRNPYDWINEWVESVSDDADFLV 189 Query: 251 YQIDTRT--VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR 308 + + + I D D R + LG+ P N + + Sbjct: 190 VHTTYLDDELHFLSEQYLHDIEKYKHNDYDYYRWQFLGE-PVGLGTNVYKMDLFQRLEHL 248 Query: 309 EAIDDLYAPLIMGCDIAG 326 E ++D L D+ Sbjct: 249 EDLNDSVVDLYFSADVGH 266 >gi|261885730|ref|ZP_06009769.1| hypothetical protein CfetvA_11664 [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 560 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 49/349 (14%), Positives = 116/349 (33%), Gaps = 44/349 (12%) Query: 6 STDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQP--HRWQLEFMEAVD 63 S+D + + L+ A L +N V + K +P+ + S P + +E + Sbjct: 89 SSDNSDDVVMLSELISALAKL--ENGVKKIKSIKDKPRPMLNLSSPVASELKKRILEKGN 146 Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 ++ + + F+ + R IG + +++ L G + + ++ SE Q Sbjct: 147 LYGYQKEFLQSDDSFRI-VLKSRQIGFSYVSSADALIGAVA--GRNQLFLSASEEQAL-I 202 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 L + KW S +A+ E + + + ++ Sbjct: 203 LMRYLRKWASEFGVE---------------FAKDSEHEIALPNGAII-------KDLAHN 240 Query: 184 FVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241 F G ++ DE + P+ I + + + S F++++ Sbjct: 241 FRTVQEFTGD-IWMDEFAWYPNPKKIWHAFVPSI--GAIKGRLTILSTPFEERSLFHELY 297 Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNNFIPHN 300 + + + + I+ G + + L D+D QF + ++ + Sbjct: 298 SDESKYYMFKRFCVSIYSAIEDGLDFDLETMRNLFDADTWASAYECQFVD-DESSLLSIA 356 Query: 301 YIEEAMSRE---AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346 I+ + + + G DI D++ + G ++E + Sbjct: 357 LIKSCVYDKASYYTPKSNQVIYAGYDIGRV-SDRSTLA---GVVLEDVT 401 >gi|167041080|gb|ABZ05841.1| hypothetical protein ALOHA_HF400048F7ctg1g8 [uncultured marine microorganism HF4000_48F7] Length = 504 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 51/370 (13%), Positives = 97/370 (26%), Gaps = 47/370 (12%) Query: 1 MPRLISTDQKLEQELHEMLMHA-ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFM 59 M DQ E++ + L + ++ ++ F +P+ +QL F Sbjct: 1 MTTRQQADQWAEEQYLDGLDEVLKLRDEYE---------ELRRTNQMDFYEPYPYQLTFH 51 Query: 60 EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML---------WLISTRPGMSI 110 EA D + AG +GKT A + W R +I Sbjct: 52 EAKDDAGQRARQR--------CLMAGNKVGKTFSGAMELAYHLTGKYPDWWTGHRFDRAI 103 Query: 111 ICIAN--SETQLKNTLWAEVSKWLSMLPHRHW-FEMQSLSLHPSGWYAELLEQSMGIDSK 167 A S ++ + +E+ + L + + Sbjct: 104 HAWAAGKSHYATRDIVQSELIGEPGDPESFGTGAIPKDLIVKTERNPGVPNALGFVLVKH 163 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227 R + V+ DE +I ++++ P T Sbjct: 164 VSGRNSRLQFKSYDAGPASWMGVAVDYVWLDEEPPQ-EIYSQALRATLKSGGPVSL---T 219 Query: 228 SNTRRLNGWFYDIFNIPLEDWKR-YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 +F + + Q + E I++ + R + Sbjct: 220 FTPEAGVTGVVAMFLNERKGGQALVQATWDDAPHLSLEVREEILAALPPHERLMRSKG-- 277 Query: 287 QFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF-----RRGNI 341 P P + +S AI D ++ I G D G D R ++ Sbjct: 278 -IPTLGSGQVFPVPEDQIMVSAFAIPDHFSR-IAGID---FGFDHPTACVWMAHDRDTDV 332 Query: 342 IEHIFDWSAK 351 + + K Sbjct: 333 VYLYDAYREK 342 >gi|148750837|ref|YP_001285878.1| putative terminase large subunit [Lactobacillus phage LL-H] gi|134105522|gb|ABO60921.1| putative terminase large subunit [Lactobacillus phage LL-H] Length = 433 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 40/324 (12%), Positives = 101/324 (31%), Gaps = 43/324 (13%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST----RPGMSIIC 112 + ++ H N P GRG K+++ + +++ + +++C Sbjct: 4 RLTDQINPHFRKLWNTRRPY---VIAKGGRGSFKSSVISIKLVFDMIKAINAGHKANVVC 60 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 I + + L+++++ ++ + +L F ++ L + + Sbjct: 61 IRENASYLRDSVYNQILWAMDILKVSDQFRTRASPLKI-----------------EHIQS 103 Query: 173 CRTYSEERPDTFVGPHNTH---GMAVFNDEASGTPD-IINKSILGFFTELN----PNRFW 224 T+ + + + + +AV+ +E + + + + F Sbjct: 104 GSTFYFYGANDPMKLKSNNVGDIIAVWFEEFANLKNIDVFDQAVPTFIRQKPAWLGQAKV 163 Query: 225 IMTSNTRR-LNGWFYDIFNIPLEDWKRYQIDTRTVEG----IDSGFHEGIISRYGLDSDV 279 + N + W + D + + ++ + I S D D Sbjct: 164 YCSYNPPKNPYLWINEWITQKENDPNFFIDHSTYLDDKLGFTTKQQLDMIDSYKENDFDY 223 Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF--- 336 R LG+ N + + D + G D E TVV Sbjct: 224 YRWLYLGE-VVGLGTNVYNMDLF-HPVDSIPDGDYITDVYYGMDAGHEVSATTVVAVGLT 281 Query: 337 RRGNIIEHIFDWSAKLIQETNQEG 360 R+G++ + + +TN++ Sbjct: 282 RKGDVYL-LDTYYYSPAGKTNKKP 304 >gi|319400037|gb|EFV88278.1| phage Terminase family protein [Staphylococcus epidermidis FRI909] Length = 571 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 35/293 (11%), Positives = 81/293 (27%), Gaps = 31/293 (10%) Query: 19 LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78 + E L F+ F IKGK + WQ + + + Sbjct: 57 IYSPEHALHPIEFIE-SFCKHIKGKYAGTPIELELWQKAGIATIFGFINKKTKERKYQEI 115 Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLP 136 ++ R GK+T+++ + L+L+ G + +A + Q K +W + K ++ P Sbjct: 116 FWVVA--RKNGKSTISSGIALYLLGADGEGGPEVYTVATKKDQAK-IVWNDAKKMVNKSP 172 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 + ++ + + L + + H Sbjct: 173 LLKLDFVTKVAEILTPFNDGQLIP--------------LGRDSDTTDGLNVHG-----AI 213 Query: 197 NDEASGT-PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255 DE + + + + +T+ N + + Sbjct: 214 MDEVHAWKTMQMYDVVFDGISARDNPLILAITTAGTIRNSVYDIKYEESE---NIINGLW 270 Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR 308 + F I + + L P + + + I+ ++R Sbjct: 271 EDEGYKNERFLPLIYELDSREEWIDESCWLKANP--GLGSIKKIDAIKTKVNR 321 >gi|166031069|ref|ZP_02233898.1| hypothetical protein DORFOR_00750 [Dorea formicigenerans ATCC 27755] gi|166029336|gb|EDR48093.1| hypothetical protein DORFOR_00750 [Dorea formicigenerans ATCC 27755] Length = 454 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 36/263 (13%), Positives = 80/263 (30%), Gaps = 26/263 (9%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 +N + +++GR K++ A + I + P S + + +L+ T++ E+ + + Sbjct: 10 NNRKVKHIILTSGRAGTKSSYAAIRTDYQIVSDPHGSAVVLRKHHNKLRKTVYKEMIRGI 69 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 + L + + + + Y + + Sbjct: 70 NRLGIS--------KKKFAITKSPMEITYKKYGTTIYFSGSDGIDDTKGIIDEDK---PI 118 Query: 193 MAVFNDEAS-----GTPDIINKSILGFFTELNPNRF-WIMTSNTRR----LNGWFYDIFN 242 V DE + G + +I F N + F I N + + Sbjct: 119 KLVVLDELTEFFDDGEGEDELSNIEATFVRGNSSGFQMIYLYNPPKNPNAPINQWCKKME 178 Query: 243 IPLEDWKRYQIDTRTVE--GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 + D R V + + + D + R LGQ V+ I + Sbjct: 179 KREDCIH-IHTDYRDVPVSWLGQALVDSAEAMKRADEKMYRWVWLGQ--AVGVDELIYYM 235 Query: 301 YIEEAMSREAIDDLYAPLIMGCD 323 + + + + Y + +G D Sbjct: 236 FGDRHRQKPDPNRRYDRIYIGGD 258 >gi|213967396|ref|ZP_03395544.1| hypothetical protein PSPTOT1_3739 [Pseudomonas syringae pv. tomato T1] gi|213927697|gb|EEB61244.1| hypothetical protein PSPTOT1_3739 [Pseudomonas syringae pv. tomato T1] Length = 496 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 42/346 (12%), Positives = 90/346 (26%), Gaps = 79/346 (22%) Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 ++ + I R +G TTL + L + IA++ K Sbjct: 36 QEQIDYFQGMHTRNIILKARQLGFTTLVCIVQL-DAALFESAKCALIAHTLNDAKRLFRE 94 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 ++ LP + + + + ++ T Sbjct: 95 KIKYAYDNLPK---------EIRAANPASNDAAGELVFSKGGSLYVSTSFRG---GTLRY 142 Query: 187 PHNTHGMAVFNDEASGT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242 H E P + + G F + + F + S G+F+D Sbjct: 143 LH--------VSEFGKICAKFPHKAREIVTGAFEAVAADCFVTIESTAEGRAGYFFDYSQ 194 Query: 243 IPLE-----------DWKRYQIDTRTV------------EGIDSGFHEGIISRYGLDSDV 279 + DWK + + + + +++G+ ++ Sbjct: 195 SAEKQQLSGVPLGKLDWKFFFFSWWRNGLYWLDPAEVVIPQRLTDYFNELQAKHGIVTNP 254 Query: 280 ARIEI-------LGQ-------------FPQQEVNNFIPHNYIEEAMSREAIDDL---YA 316 + LG F Q + + + ++ + Sbjct: 255 GQRAWYSAKEKSLGDDMKREYPSLPAEAFQQSVEGAYYAKQFAKLYANKRIGVIPNNSHQ 314 Query: 317 PLIMGCDIAGEGGDKTVVVFRRGNIIEHIF-DWSAKLIQETNQEGC 361 P++ DI GD T + F + I ++ E + EG Sbjct: 315 PVMTFWDIGV--GDSTAIWF-----VRQIGTEYHVIDYYENSGEGL 353 >gi|323691285|ref|ZP_08105560.1| phage terminase [Clostridium symbiosum WAL-14673] gi|323504625|gb|EGB20412.1| phage terminase [Clostridium symbiosum WAL-14673] Length = 591 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 41/317 (12%), Positives = 85/317 (26%), Gaps = 56/317 (17%) Query: 69 NVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWL--ISTRPGMSIICIANSETQLKNTLW 125 F+ + + GR GK+ +N + + I C A + Q N ++ Sbjct: 89 RTKEKGHRRFRTSYVQLGRQNGKSFINGILACYYGNFDGYKYGKIFCTATKQDQA-NIVF 147 Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185 E+ K+++ +E + + T DT Sbjct: 148 DEIVKFIN----------------SDEDLSEWFKVHEHNHTIDCLCTHSEIKALSGDT-K 190 Query: 186 GPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-- 242 DE + + + K + G +L ++T+ L Y ++ Sbjct: 191 SLDGHRAYLGIVDEYHAHKTNQMYKLLEGGIKKLKSALISVITTAGFDLKSPCYKLYEYC 250 Query: 243 --------------------------IPLEDW---KRYQIDTRTVEGIDSGFHEGIISRY 273 E+W Sbjct: 251 CNLLKGVFENDSQFVYIAQLDTADDLYKKENWIKANPILEYDEDALENLVPVANTARDMG 310 Query: 274 GLDSDVARIEILGQFPQQEVNNFIP--HNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDK 331 G D ++ L + Q +I ++ A R D + +G D++ GGD Sbjct: 311 GEDLRDFLVKQLNMWMQWSNALYIKDIKDWKRCAALRTLKDFRGSKCYVGVDLS-SGGDL 369 Query: 332 TVVVFRRGNIIEHIFDW 348 T + +++ + + Sbjct: 370 TSIAIVIPYMVDGVKKY 386 >gi|149012736|ref|ZP_01833712.1| terminase large subunit [Streptococcus pneumoniae SP19-BS75] gi|147763336|gb|EDK70274.1| terminase large subunit [Streptococcus pneumoniae SP19-BS75] Length = 432 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 41/291 (14%), Positives = 86/291 (29%), Gaps = 25/291 (8%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTI--FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 Q + + + + + ++ + RG K+ A + + P +++ Sbjct: 9 QSDIVIDLPKTVGAGYGQFWRSRNLYRV-VKGSRGSKKSKTTALNYVIRLLKYPWANLLV 67 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 I K + + + ++L H F+ + I + I Sbjct: 68 IRRYSNTNKQSTYTDFKWACNVLGVTHLFKFNES------------LPEITIKATGQKIL 115 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI-----INKSILGFFTELNPNRFWIMT 227 R +E T + + +EA + +SI G + + +T Sbjct: 116 FRGLDDELKITSITVDVGSLCWAWFEEAYQIETEDKFSTVVESIRGSLDVPDFFKQITVT 175 Query: 228 SNTRRLNGWFYDIF---NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 N W +F D + E +D + Y + ARI Sbjct: 176 FNPWNERHWLKRVFFDEETRRADTFATTTTYKCNEWLDEVDIKRYEDLYHTNPRRARIVC 235 Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335 G++ + +++ E + D L +G D G D T + Sbjct: 236 DGEW-GVAEGLIYENVTVKDFNKDELLQDSANKLCIGLDF-GFTHDPTALC 284 >gi|284800945|ref|YP_003412810.1| terminase large subunit [Listeria monocytogenes 08-5578] gi|284056507|gb|ADB67448.1| terminase large subunit [Listeria monocytogenes 08-5578] Length = 583 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 37/301 (12%), Positives = 90/301 (29%), Gaps = 37/301 (12%) Query: 65 HCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTRPG---MSIICIANSETQL 120 H N FK A + R GK+ L A +ML+ + A ++ + Sbjct: 102 HGWYKKGKKNVRRFKTALVMMARKNGKSILIAGLMLYEFLFFKNPQMSRQMFCAGNDKKQ 161 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH------YTITCR 174 + ++ V+K+L L + ++ + + + S+ + Sbjct: 162 ASLVFKMVAKFLRALSLQDKQVRKATKKVREEIRNLIDDSFIIPLSRDTSSLDGFEPQFT 221 Query: 175 TYSEERPDTFVGP---------HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225 + E T + A + T + P I Sbjct: 222 SMDEAHEYTDDEIFELIESGQGQLESPLTFIISTAGFKLNGWLY------TTMYPYAKSI 275 Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI--------DSGFHEGIISRYGLDS 277 + N + + ++W+ ++ + + + I + Sbjct: 276 LAGNVIDDEMFVFIAEQDFADEWQDETTWIKSNPILEIKAKYEDNMEYLRKRIKTGIEQN 335 Query: 278 DVARIEILG--QFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335 + R + + Q +++ + A + +A + +G D++ +GGD + + Sbjct: 336 KIFRRLVKNFNYWMQASEESYMDSKDWKAAGTSDADI-YGKDVYIGVDLS-KGGDISALG 393 Query: 336 F 336 F Sbjct: 394 F 394 >gi|206600184|ref|YP_002241790.1| gp3 [Mycobacterium phage Ramsey] gi|206287272|gb|ACI12615.1| gp3 [Mycobacterium phage Ramsey] Length = 495 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 35/328 (10%), Positives = 81/328 (24%), Gaps = 43/328 (13%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 + RWQ + A + +I+ R GKT ++ + +RPG Sbjct: 46 EFDRWQEDIWYAALGLREDGTLACDVMGVTLSIA--RQAGKTWGIMVGLIAICLSRPGTL 103 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ ++ + TL +++ + R + + + Sbjct: 104 VVWSSHHDRTSSETL-TKIAGIVEKPAIRPKMRP------MHPVVQSDDNRGVHFANGSR 156 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 + + DE + +L ++ Sbjct: 157 ILFGARAQGFGRG------FSEVDIQVYDECQNLKESALTDMLAAM-NVSEIGLAFFMGT 209 Query: 230 TRRLNGW---FYDIFNIPLEDW------KRYQIDTRT-VEGIDSGFHEGIISRYGLD--- 276 R +D F + + ++ I + D Sbjct: 210 PPRPQEVALGVHDAFKRRRDRALEQKKRRPFKGVYVEFAPESPDDVVADIDAPGFWDRLA 269 Query: 277 --SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI-------MGCDIAGE 327 + + ++ V N P + E + + ++ + CD+ Sbjct: 270 EANPSFGHRVGKSAIERLVENMSPEDVRREVFGIWDKTNEVSSVVPGDQWRSLCCDVDDL 329 Query: 328 GGDKTVVVF---RRGNIIEHIFDWSAKL 352 G D + R G + WS Sbjct: 330 G-DVSAFGVSATRSG-WFWIVACWSGVD 355 >gi|321157116|emb|CBW39102.1| Phage terminase [Streptococcus phage 23782] Length = 470 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 37/299 (12%), Positives = 85/299 (28%), Gaps = 49/299 (16%) Query: 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 WQ+ + ++ + + + R GK+ L LW + G++I+ Sbjct: 43 WQVNLLTSIMAVDKNGLWVHQKFGYSI----PRRNGKSELLYLFELWGL--HNGLNILHT 96 Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173 A+ + + + +V +L + + + S+ + Sbjct: 97 AHRISTSH-SSFEKVKCYLEKMGYVDGEDFSSIRAKGQ------ERIELFDGGGIVQFRT 149 Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR-- 231 RT + + DEA ++ T+ + IM Sbjct: 150 RTSNGGL--------GEGFDLLVIDEAQEYTTEQESALKYTVTDSSNPIT-IMCGTPPTP 200 Query: 232 ------------------RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE-GIISR 272 + + ++ + + +E I + Sbjct: 201 VSNGTVFTNYRKNCLFGKGKYSGWAEWSVSEEKEIDDVDAWYNSNPSMGYHLNERKIEAE 260 Query: 273 YGLDSDVARIEILGQFPQQEVNNFIP-HNYIEEAMSREAIDDLYAPLIMGCDIAGEGGD 330 G D ++ LG +P+ + I + E + +++ DL L +G G D Sbjct: 261 LGDDKLDHNVQRLGYWPEYNQKSAISETEWNELCV--DSMPDLSGKLFVGV---KYGQD 314 >gi|148543902|ref|YP_001271272.1| phage terminase [Lactobacillus reuteri DSM 20016] gi|184153299|ref|YP_001841640.1| phage large terminase subunit [Lactobacillus reuteri JCM 1112] gi|227364811|ref|ZP_03848859.1| bacteriophage terminase large subunit [Lactobacillus reuteri MM2-3] gi|325682564|ref|ZP_08162081.1| prophage Lp3 protein 15 [Lactobacillus reuteri MM4-1A] gi|148530936|gb|ABQ82935.1| phage Terminase [Lactobacillus reuteri DSM 20016] gi|183224643|dbj|BAG25160.1| phage large terminase subunit [Lactobacillus reuteri JCM 1112] gi|227070155|gb|EEI08530.1| bacteriophage terminase large subunit [Lactobacillus reuteri MM2-3] gi|324978403|gb|EGC15353.1| prophage Lp3 protein 15 [Lactobacillus reuteri MM4-1A] Length = 569 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 41/304 (13%), Positives = 85/304 (27%), Gaps = 55/304 (18%) Query: 69 NVNNSNPTIF-KCAISAGRGIGKTTLNAWMMLWLISTRP----GMSIICIANSETQLKNT 123 + N F + +S R GK+ L A + + + I+ ANS Q Sbjct: 85 RQVDDNSLRFNRILLSEARKNGKSFLLAAIGVVSLLMEKQPARNRQILFTANSSQQAH-L 143 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 + +S L L + + + K S + T Sbjct: 144 AFDIMSDQLENL-----------RRNSKYLRQRVKINKQRVTDKKTGSFAIPLSTDTHST 192 Query: 184 FVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNPNRFWIM---------------- 226 + DE D ++ + + I+ Sbjct: 193 D----GYNPTLGVVDEYHQAKDNTILNALNSGMAQQDNGILAIISTAGFNLNSPFKNEWD 248 Query: 227 ----TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT--VEGIDSGFHEG-IISRYGLDSDV 279 N++ N ++ + + + + + + + + D DV Sbjct: 249 YAADILNSKIKNDRYFAVMYCLDKKEEIFNPEMWIKANPLMSNPKIAKTMREHIQNDLDV 308 Query: 280 A---------RIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGD 330 A ++ + F QQ N++I E + +A D + +G D++ D Sbjct: 309 ATKQNNINNVLVKNMNMFVQQNENSYISTQDWEHGLIEKAPDISNRDVYIGADLSKS-RD 367 Query: 331 KTVV 334 T + Sbjct: 368 LTAI 371 >gi|302132892|ref|ZP_07258882.1| putative phage terminase large subunit [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 496 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 42/346 (12%), Positives = 90/346 (26%), Gaps = 79/346 (22%) Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 ++ + I R +G TTL + L + IA++ K Sbjct: 36 QEQIDYFQGMHTRNIILKARQLGFTTLVCIVQL-DAALFESAKCALIAHTLNDAKRLFRE 94 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 ++ LP + + + + ++ T Sbjct: 95 KIKYAYDNLPK---------EIRAANPASNDAAGELVFSKGGSLYVSTSFRG---GTLRY 142 Query: 187 PHNTHGMAVFNDEASGT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242 H E P + + G F + + F + S G+F+D Sbjct: 143 LH--------VSEFGKICAKFPHKAREIVTGAFEAVAADCFVTIESTAEGRAGYFFDYSQ 194 Query: 243 IPLE-----------DWKRYQIDTRTV------------EGIDSGFHEGIISRYGLDSDV 279 + DWK + + + + +++G+ ++ Sbjct: 195 SAEKQQLSGVPLGKLDWKFFFFSWWRNGLYWLDPAEVVIPQRLTDYFNELQAKHGIVTNP 254 Query: 280 ARIEI-------LGQ-------------FPQQEVNNFIPHNYIEEAMSREAIDDL---YA 316 + LG F Q + + + ++ + Sbjct: 255 GQRAWYSAKEKSLGDDMKREYPSLPAEAFQQSVEGAYYAKQFAKLYANKRIGVIPNNSHQ 314 Query: 317 PLIMGCDIAGEGGDKTVVVFRRGNIIEHIF-DWSAKLIQETNQEGC 361 P++ DI GD T + F + I ++ E + EG Sbjct: 315 PVMTFWDIGV--GDSTAIWF-----VRQIGTEYHVIDYYENSGEGL 353 >gi|154496017|ref|ZP_02034713.1| hypothetical protein BACCAP_00300 [Bacteroides capillosus ATCC 29799] gi|150274900|gb|EDN01956.1| hypothetical protein BACCAP_00300 [Bacteroides capillosus ATCC 29799] Length = 415 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 33/250 (13%), Positives = 64/250 (25%), Gaps = 30/250 (12%) Query: 87 GIGKTTLNA-WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 GKT + W ++ + + L+ L + L L R ++ Sbjct: 34 RSGKTFCMGLSFVCWAMARFQNTAFGLCGKTTVSLRRNLVRGLIPVLEELGFRCEEKVSR 93 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 L E T + + V DE + P Sbjct: 94 NLLTVRRGGQEN--------------TFYLFGGRDEGSAALIQGVTLAGVLLDEVALMPR 139 Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR--YQIDTRTVEGIDS 263 + + ++ N WFY + E+ + G+ Sbjct: 140 SFVEQACARCSVAGSRLWFNC--NPEGPEHWFYKEWIQKAEERRALYLHFTMEDNPGLRP 197 Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323 + R +LG++ E + ++ +E+ E D + + CD Sbjct: 198 EVKARYGRMFSG--AFYRRFVLGEWVAAEGRVY---DFFDESY-LEEPPDGLSRWCISCD 251 Query: 324 -----IAGEG 328 A G Sbjct: 252 YGTVNPASFG 261 >gi|32469469|ref|NP_862877.1| gp38 [Streptococcus phage SM1] gi|32441621|gb|AAP81920.1| gp38 [Streptococcus phage SM1] Length = 459 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 37/300 (12%), Positives = 79/300 (26%), Gaps = 47/300 (15%) Query: 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 WQ + + + + + R GK+ L +W + G++I+ Sbjct: 43 WQKNLLLPMMAVDKNGLWVHQKFGYSI----PRRNGKSELLYIGEIWGL--HEGLNILHT 96 Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173 A+ + + +V ++L + + + S+ + Sbjct: 97 AHRISTSH-ASFEKVKRYLEKMGYVDGEDFNSIRAKGQ------ERIELYSTGGVIQFRT 149 Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233 RT + + DEA ++ T+ IM Sbjct: 150 RTSNGGL--------GEGFDMLIIDEAQEYTTEQESALKYTVTDSENPIT-IMCGTPPTP 200 Query: 234 NGW--------------------FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE-GIISR 272 + + ++ + + + +E I + Sbjct: 201 VSSGTVFTKYRETCLFGKGKYSGWAEWSVSDEKEIDDVEAWYNSNPSMGYHLNERKIEAE 260 Query: 273 YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKT 332 G D I+ LG +P + I E + +L L +G G D T Sbjct: 261 LGEDKLDHNIQRLGFWPTYNQKSAISETEWNELKMDDI-PELSGKLSVGI---KYGQDGT 316 >gi|320160638|ref|YP_004173862.1| hypothetical protein ANT_12280 [Anaerolinea thermophila UNI-1] gi|319994491|dbj|BAJ63262.1| hypothetical protein ANT_12280 [Anaerolinea thermophila UNI-1] Length = 1068 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 34/244 (13%), Positives = 68/244 (27%), Gaps = 30/244 (12%) Query: 15 LHEMLMHAECVLSF---KNFVMRFFPWGI----------KGKPLEHFSQPHRWQLEFMEA 61 L M+ A F + F+ P G L+ F P Sbjct: 498 LTRMIYSALVDADFQETEIFMKGVKPRGEYDDIPTLQRKLDTYLKQFENPTSDINRKRNE 557 Query: 62 VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121 + C N P F + G GKT + L +T II + T ++ Sbjct: 558 ILHACIEKGENEKPGFFSLTV--PTGGGKTLASIAFALHHAATHGLKRIIYVIPFTTIIE 615 Query: 122 N--TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY---------T 170 ++ E+ ++L H F+ + + + + ++++ Sbjct: 616 QNAQVFKEIFGEENVLEHHSNFDWNDGKREDADNRTNSILAKLKLAAENWDIPIVVTTNV 675 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII----NKSILGFFTELNPNRFWIM 226 + + + HN + DEA P ++ T + + Sbjct: 676 QFFESLFDNKSSRCRKLHNIAKSVIIFDEAQMLPKEYIRPAMAAVWELVTNYGASAVFCT 735 Query: 227 TSNT 230 + Sbjct: 736 ATQP 739 >gi|251777966|ref|ZP_04820886.1| phage terminase, large subunit, pbsx family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082281|gb|EES48171.1| phage terminase, large subunit, pbsx family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 417 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 34/251 (13%), Positives = 65/251 (25%), Gaps = 19/251 (7%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 GRG K++ + ++ I I+ A ++K+TL V + Sbjct: 32 KGGRGSTKSSFISIEIVLGIMKDAQEGIMSNALILRRVKDTLSESVRDQIKWAIDILGV- 90 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF---NDE 199 W + ++ S I + + + ++ DE Sbjct: 91 -------SDDWIIPEAKLTITYKSTGQVIRFKGADNPKKVKSTKVPKGYIKYIWYEEVDE 143 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN-GWFYDIFNIPLEDWKRYQIDTRTV 258 G I ++I P F + N W ED + TV Sbjct: 144 FEGYDKI--RNINQSLMRGGPKFFVFYSFNPPESQRNWANLEVLDKREDKLIHHSTYLTV 201 Query: 259 E--GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA 316 + F ++ + LG+ + I + + + Sbjct: 202 PRDWLGEPFITEAEDLKEKNTTKYEHDYLGK-VTGTGAEIFDNVVIRK--ISDEEVRSFD 258 Query: 317 PLIMGCDIAGE 327 L G D Sbjct: 259 RLYRGVDFGWF 269 >gi|139472824|ref|YP_001129382.1| ORF29 [Human herpesvirus 8] gi|2246552|gb|AAB62677.1| ORF 29 [Human herpesvirus 8] gi|87196854|gb|ABD28880.1| ORF29 [Human herpesvirus 8] gi|261853505|gb|ACY00427.1| ORF29 [Human herpesvirus 8] gi|312275173|gb|ADQ57910.1| core gene UL15 family protein [Human herpesvirus 8] Length = 687 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 15/163 (9%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GKT + ++ L+++ ++I +A+ + N+++AE+ K L WF + Sbjct: 222 PRRHGKTWIVVAIISMLLASVENINIGYVAHQKHVA-NSVFAEIIKTL-----CRWFPPK 275 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 +L++ S ++ DEA+ Sbjct: 276 NLNIKKENGTIIYTRPGGRSSSLMCATCF---------NKNSIRGQTFNLLYVDEANFIK 326 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247 +ILGF + + +I + N+ + F E Sbjct: 327 KDALPAILGFMLQKDAKLIFISSVNSSDRSTSFLLNLRNAQEK 369 >gi|1136808|gb|AAB08384.1| gene 29 protein [Human herpesvirus 8] Length = 687 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 15/163 (9%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GKT + ++ L+++ ++I +A+ + N+++AE+ K L WF + Sbjct: 222 PRRHGKTWIVVAIISMLLASVENINIGYVAHQKHVA-NSVFAEIIKTL-----CRWFPPK 275 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 +L++ S ++ DEA+ Sbjct: 276 NLNIKKENGTIIYTRPGGRSSSLMCATCF---------NKNSIRGQTFNLLYVDEANFIK 326 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247 +ILGF + + +I + N+ + F E Sbjct: 327 KDALPAILGFMLQKDAKLIFISSVNSSDRSTSFLLNLRNAQEK 369 >gi|330989588|gb|EGH87691.1| hypothetical protein PLA107_31509 [Pseudomonas syringae pv. lachrymans str. M301315] Length = 433 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 31/270 (11%), Positives = 69/270 (25%), Gaps = 33/270 (12%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 AG G GKT + + + P ++ A + Q+++ + + Sbjct: 23 AGFGSGKTWVGCAGICKHVWEWPRINSGYFAPTYPQIRDIFFPTIE-------------- 68 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + ++ + S + + DE Sbjct: 69 EVAFDWGLKVKTKESDKEVEFYSGGQYRSTTICRSM--EKPQTIVGFKIGHALVDELDVL 126 Query: 204 P----DIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIF-------NIPLEDWKRY 251 P + + I+ + + + T + Y F + Sbjct: 127 PALKAEHAWRKIIARMRYNAPGLKNGVDVTTTPEGFKFVYQQFVKQLREKPGMQGMYGLV 186 Query: 252 QIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310 Q T E + + ++ Y + + GQF + Y + Sbjct: 187 QASTFDNELNLPPDYIPSLMESY--PPQLILAYLNGQFVNLNAGSIYH-AYDRKLNGCFD 243 Query: 311 IDDLYAPLIMGCDIAGEGGDKTVVVFRRGN 340 PL +G D G + +R + Sbjct: 244 SVQDGEPLFIGMDF-NVGKMAAITHVKRAD 272 >gi|149196474|ref|ZP_01873529.1| hypothetical protein LNTAR_14992 [Lentisphaera araneosa HTCC2155] gi|149140735|gb|EDM29133.1| hypothetical protein LNTAR_14992 [Lentisphaera araneosa HTCC2155] Length = 609 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 24/202 (11%), Positives = 50/202 (24%), Gaps = 11/202 (5%) Query: 68 SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127 + N N + R +GKT + ++ R + + +A Q A+ Sbjct: 70 RPLFNLNLEAQQVTYQCCRQVGKTESLSSLVCLKARVRDNYNSLVVAPRHEQATRISAAK 129 Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187 +L + SL E ++ +K Y I C + Sbjct: 130 TIPFLKESLAAKLPKFYVDSLR----DVHKQEITLKNQNKIYFIGCYL-------SPDAA 178 Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247 V+ DE + + +G + F + Sbjct: 179 RGLSTECVYYDEYQDINPEHTPVVNACKDGSMLYGEEYYFGTPKSTSGPLTEKFMEGSQG 238 Query: 248 WKRYQIDTRTVEGIDSGFHEGI 269 + + E + + Sbjct: 239 YWCVSCPSCDKEVWANDDIDDA 260 >gi|300717758|ref|YP_003742561.1| phage terminase large subunit [Erwinia billingiae Eb661] gi|299063594|emb|CAX60714.1| putative phage terminase large subunit [Erwinia billingiae Eb661] Length = 494 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 44/333 (13%), Positives = 81/333 (24%), Gaps = 78/333 (23%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + I R +G TT + L + IA++ K +V LP Sbjct: 48 RNIILKARQLGFTTEVCIIQL-DAALFESAKCALIAHTLNDAKRLFREKVKYAYDNLPD- 105 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + + + + ++ T H Sbjct: 106 --------EIKAANPASNDSAGELVFKKGGSLYVSTSFRG---GTLRYLH--------VS 146 Query: 199 EASGT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-------- 246 E PD + + G F ++ F + S G+F+D + Sbjct: 147 EFGKICAKYPDKAREIVTGAFEAVSTGCFATIESTAEGRAGYFFDYCQTAEKALLQGKKL 206 Query: 247 ---DWKRYQIDTRTVEGIDSGFHE-----------GIISRYG----LDSDVARI---EIL 285 DWK + E + +++G + L Sbjct: 207 SPLDWKFFFFSWWKNPQYAIDPVEALPQRLVDYFDEMEAKHGVILNERQKAWYFAKEKTL 266 Query: 286 GQ-------------FPQQEVNNFIPHN---YIEEAMSREAIDDLYAPLIMGCDIAGEGG 329 G F Q + D+ + P+ DI G Sbjct: 267 GDDMKREYPTIPAEAFQQSVEGAYYAKQFRWLYTNKRIGTLPDNSHLPVHTFWDIGV--G 324 Query: 330 DKTVVVFRRGNIIEHIF-DWSAKLIQETNQEGC 361 D T + F + + ++ E + EG Sbjct: 325 DSTAIWF-----VREVGEEFHVIDYYENSGEGL 352 >gi|162452343|ref|YP_001614710.1| hypothetical protein sce4067 [Sorangium cellulosum 'So ce 56'] gi|161162925|emb|CAN94230.1| hypothetical protein predicted by Glimmer/Critica [Sorangium cellulosum 'So ce 56'] Length = 414 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 29/273 (10%), Positives = 64/273 (23%), Gaps = 26/273 (9%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG-------MSIICIANSETQLKNTLW 125 + GR GK++ + + ++ ++ S + L Sbjct: 39 YMSGRRTLVLRVGRRGGKSSTLCRLAVVEALFGEHDIPPGDVGTVPIVSTSRDEAAARL- 97 Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185 + L L +++ L + + T + + Sbjct: 98 RTIEAILRALGVDFRKAGEAIELQRDDGAPVAFKVFAASIAGVSGFTAIAAICDEVAKWQ 157 Query: 186 GPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL 245 D A+ + I S+ P ++S+ YD F Sbjct: 158 DR----------DTAANPAEEILTSLRPTMATQ-PQARLFLSSSPLSTLDAHYDAFERGE 206 Query: 246 EDWKR--YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303 + + I E D+ V E PQ ++ + ++ Sbjct: 207 TPTQCVAHAPTWTANPSIS----EQDTRALEADARVWAREYRAI-PQAAISAAFDPDAVD 261 Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 A ++ D + D Sbjct: 262 RAFRDPGCSYHAGERVLVLDPSSGRNDSFTYAV 294 >gi|109521463|ref|YP_655891.1| gp26 [Mycobacterium phage Wildcat] gi|91980915|gb|ABE67631.1| gp26 [Mycobacterium phage Wildcat] Length = 537 Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 24/272 (8%), Positives = 58/272 (21%), Gaps = 33/272 (12%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 WQ + + ++ + R GKT + L + I Sbjct: 62 DPWQEFVLRNMLNLDAQGHWAASEALLLV----PRQNGKTAIIEARELVGLYVVCDKLCI 117 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A + + + ++ + + + + + + Sbjct: 118 HTAVLFNAARESFYRLKARIENN--------ETLNKITRFRSGNDNMSIEVKPKKESRHP 169 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN-- 229 + DEA + +I + +S Sbjct: 170 NAGGRVIYMARGTAVARGFSADVIVLDEAFALDEASIAAIDYATSARANPFIIYASSTGL 229 Query: 230 -----------------TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISR 272 L + ++ Y+ + I +R Sbjct: 230 EDSTELEKLHDRGMRQDPDMLFMEWCATTRDLDDEENYYRSNPALGYRISIERIRKERNR 289 Query: 273 YGLDSDVARIEILGQFPQQEVNNFIPHNYIEE 304 + + E LG + N IP + + Sbjct: 290 HSDKT--FGRERLGLWNDNAFNAVIPADQWKS 319 >gi|148379681|ref|YP_001254222.1| terminase large subunit [Clostridium botulinum A str. ATCC 3502] gi|237795044|ref|YP_002862596.1| phage terminase, large subunit, PBSX family [Clostridium botulinum Ba4 str. 657] gi|148289165|emb|CAL83259.1| terminase large subunit [Clostridium botulinum A str. ATCC 3502] gi|229261270|gb|ACQ52303.1| phage terminase, large subunit, PBSX family [Clostridium botulinum Ba4 str. 657] Length = 419 Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 36/262 (13%), Positives = 66/262 (25%), Gaps = 20/262 (7%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 GRG K++ + ++ I + A ++K+TL V + Sbjct: 32 KGGRGSTKSSFISIEIVLGIMRDAQEGKLTNALILRRVKDTLSESVRDQIKWAIDILGV- 90 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF---NDE 199 W+ + ++ I + + + ++ DE Sbjct: 91 -------SDEWHIPEAKLTITYKPTGQVIRFKGADNPKKVKSTKVPKGYIKYIWYEEVDE 143 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN-GWFYDIFNIPLEDWKRYQIDTRTV 258 G I +I P F + N W +D + D R V Sbjct: 144 FEGKNKI--DTINQSLMRGGPKFFVFYSFNPPESQRNWCNQEVVETRKDKYVHHSDYRLV 201 Query: 259 E--GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA 316 + F ++ + LG F E + ++ Sbjct: 202 PIEWLGEQFIIEAEHMKKVNPAKYEHDYLGAVTGTGGEVFRNLTIREL---TDEEIKVFD 258 Query: 317 PLIMGCDIAGEGGDKTVVVFRR 338 L G D G D V Sbjct: 259 RLKNGLDF-GYAADPLAYVLMH 279 >gi|148993445|ref|ZP_01822962.1| terminase large subunit [Streptococcus pneumoniae SP9-BS68] gi|147928000|gb|EDK79020.1| terminase large subunit [Streptococcus pneumoniae SP9-BS68] Length = 432 Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 41/291 (14%), Positives = 86/291 (29%), Gaps = 25/291 (8%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTI--FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 Q + + + + + ++ + RG K+ A + + P +++ Sbjct: 9 QNDIVVDLPKTVGAGYGQFWRSRSLYRV-VKGSRGSKKSKTTALNYVIRLLKYPWANLLV 67 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 I K + + + ++L H F+ + I + I Sbjct: 68 IRRYSNTNKQSTYTDFKWACNVLGVTHLFKFNES------------LPEITIKATGQKIL 115 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI-----INKSILGFFTELNPNRFWIMT 227 R +E T + + +EA + +SI G + + +T Sbjct: 116 FRGLDDELKITSITVDVGSLCWAWFEEAYQIETEDKFSTVVESIRGSLDVPDFFKQITVT 175 Query: 228 SNTRRLNGWFYDIF---NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 N W +F D + E +D + Y + ARI Sbjct: 176 FNPWNERHWLKRVFFDEETSRADTFATTTTYKCNEWLDEVDIKRYEDLYHTNPRRARIVC 235 Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335 G++ + +++ E + D L +G D G D T + Sbjct: 236 DGEW-GVAEGLIYENVTVKDFDKDELLRDSANKLCIGLDF-GFTHDPTALC 284 >gi|183603148|ref|ZP_02712947.2| phage terminase large subunit [Streptococcus pneumoniae SP195] gi|183572674|gb|EDT93202.1| phage terminase large subunit [Streptococcus pneumoniae SP195] Length = 434 Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 41/291 (14%), Positives = 86/291 (29%), Gaps = 25/291 (8%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTI--FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 Q + + + + + ++ + RG K+ A + + P +++ Sbjct: 11 QNDIVVDLPKTVGAGYGQFWRSRSLYRV-VKGSRGSKKSKTTALNYVIRLLKYPWANLLV 69 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 I K + + + ++L H F+ + I + I Sbjct: 70 IRRYSNTNKQSTYTDFKWACNVLGVTHLFKFNES------------LPEITIKATGQKIL 117 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI-----INKSILGFFTELNPNRFWIMT 227 R +E T + + +EA + +SI G + + +T Sbjct: 118 FRGLDDELKITSITVDVGSLCWAWFEEAYQIETEDKFSTVVESIRGSLDVPDFFKQITVT 177 Query: 228 SNTRRLNGWFYDIF---NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 N W +F D + E +D + Y + ARI Sbjct: 178 FNPWNERHWLKRVFFDEETSRADTFATTTTYKCNEWLDEVDIKRYEDLYHTNPRRARIVC 237 Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335 G++ + +++ E + D L +G D G D T + Sbjct: 238 DGEW-GVAEGLIYENVTVKDFDKDELLRDSANKLCIGLDF-GFTHDPTALC 286 >gi|321156947|emb|CBW38936.1| Phage terminase large subunit [Streptococcus phage V22] Length = 432 Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 41/291 (14%), Positives = 86/291 (29%), Gaps = 25/291 (8%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTI--FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 Q + + + + + ++ + RG K+ A + + P +++ Sbjct: 9 QSDIVIDLPKTVGAGYGQFWRSRNLYRV-VKGSRGSKKSKTTALNYVIRLLKYPWANLLV 67 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 I K + + + ++L H F+ + I + I Sbjct: 68 IRRYSNTNKQSTYTDFKWACNVLGVTHLFKFNES------------LPEITIKATGQKIL 115 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI-----INKSILGFFTELNPNRFWIMT 227 R +E T + + +EA + +SI G + + +T Sbjct: 116 FRGLDDELKITSITVDIGSLCWAWFEEAYQIETEDKFSTVVESIRGSLDVPDFFKQITVT 175 Query: 228 SNTRRLNGWFYDIF---NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 N W +F D + E +D + Y + ARI Sbjct: 176 FNPWNERHWLKRVFFDEETSRADTFATTTTYKCNEWLDEVDIKRYEDLYHTNPRRARIVC 235 Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335 G++ + +++ E + D L +G D G D T + Sbjct: 236 DGEW-GVAEGLIYENVTVKDFDKDELLRDSANKLCIGLDF-GFTHDPTALC 284 >gi|229021160|ref|ZP_04177803.1| phage terminase, large subunit [Bacillus cereus AH1273] gi|229022065|ref|ZP_04178619.1| phage terminase, large subunit [Bacillus cereus AH1272] gi|228739217|gb|EEL89659.1| phage terminase, large subunit [Bacillus cereus AH1272] gi|228740120|gb|EEL90474.1| phage terminase, large subunit [Bacillus cereus AH1273] Length = 562 Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 29/278 (10%), Positives = 71/278 (25%), Gaps = 28/278 (10%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML--- 135 KC + R GK+ L A ++L L+ T P S + +L + + E+ K L Sbjct: 104 KCVLLIARKSGKSFLVALVILLLMLTEPEFSEFFSVAPDRELSSIIKKEIEKMLEKSHPS 163 Query: 136 ------PHRHWFEMQSLSLHPSGWYAELLEQSMGID----SKHYTITCRTYSEERPDTFV 185 + + + +Y E ++ Sbjct: 164 ISSRFKTVQKETRCTLTKSKFVPLATSDNRMDGRLASAFVADEVGALKTSYPIEAMESSQ 223 Query: 186 GPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP----NRFWIMTSNTRRLNGWFYDIF 241 + + + + I ++ + M + W D Sbjct: 224 LNILNRLGILISTAYDTMHNPMVDQIEYAQKVMDGHITDETLFAMLYKPDNMKDWTSDEA 283 Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV--ARIEILGQFPQQE-VNNFIP 298 + + + + S + + L F + ++ Sbjct: 284 LLQAN------PLAIELPENLDELKKKRAKAMEMPSSQTNFKTKHLNIFVDGDIAEVYVS 337 Query: 299 HNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 + + + + +G D++ + D T + Sbjct: 338 TDDLRKGKISNYNW-KGRKVHIGVDLS-QSNDNTAIAM 373 >gi|38234395|ref|NP_940162.1| putative phage terminase protein [Corynebacterium diphtheriae NCTC 13129] gi|38200658|emb|CAE50354.1| Putative phage terminase protein [Corynebacterium diphtheriae] Length = 485 Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 38/277 (13%), Positives = 68/277 (24%), Gaps = 42/277 (15%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +P WQ+ F V P +S R GKT + T P Sbjct: 48 EPMPWQVLFHTIVGARNADGR----PRWPFIIVSVPRQSGKTDGVGAQAIHRTLTSPNGK 103 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I A + + ++ W E+ ++ P + + + + + Q Sbjct: 104 IWYTAQTGQKARDR-WLEMVASVNRSPFAAFARTLKTNGSEALKFEAINSQFRPH----- 157 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD----IINKSILGFFTELNPNRFWI 225 P T H+ F DEA D + ++I + I Sbjct: 158 -----------PPTADSLHSEQSDLNFIDEAWVFDDATAADLMQAITPTQATRPNRQTVI 206 Query: 226 MTSNTRRLNGWFYDIFNIPLE----------------DWKRYQIDTRTVEGIDSGFHEGI 269 +++ + WF+ + D + Sbjct: 207 VSTMGDAGSTWFHGLVEKGRAGDPGIFLLEFGIADDVDPDDLEAVAAAHPAFGYTQDMEA 266 Query: 270 ISRYGLD-SDVARIEILGQFPQQEVNNFIPHNYIEEA 305 + G N IP E+A Sbjct: 267 LRAARASLGAAGFARGYGNRATGARNQLIPSRAYEQA 303 >gi|139439135|ref|ZP_01772587.1| Hypothetical protein COLAER_01597 [Collinsella aerofaciens ATCC 25986] gi|133775482|gb|EBA39302.1| Hypothetical protein COLAER_01597 [Collinsella aerofaciens ATCC 25986] Length = 455 Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 42/311 (13%), Positives = 70/311 (22%), Gaps = 51/311 (16%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +P WQ + R GK + ++ ++ G Sbjct: 2 EPIEWQSLVLSDWCACDAEGRPAYVTCGLDV----PRQNGKNAVIEIYEVFRLAVC-GWH 56 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I+ A+ K V + + HP + + Y Sbjct: 57 ILHTAHRVKTAKKAFNRLVRYF-------------TDKEHPELSCLVERIRRTNGEEAIY 103 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF-TELNPNRFWIMTS 228 + V DEA D +I+ R I T Sbjct: 104 LTNGGSIKFSARTNGSARGFDDIQLVVFDEAQELTDSQYDAIMYTLAASATGERQIIYTG 163 Query: 229 NTRRLN--GWFYDIFN-------IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279 + G + IP +W T D+ F + + Y + + Sbjct: 164 TPPNEDCPGTVFARTRAAILAGDIPSTEWCS--WATDECPRQDATFDDVVDLIYESNPSM 221 Query: 280 --------------------ARIEILGQF-PQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318 E LG F P + IP A+ D Sbjct: 222 GIILSLDFTRTEFAGGSITGFAHERLGWFSPAAMLTRAIPRESWGAALIDAIGDRYRGKK 281 Query: 319 IMGCDIAGEGG 329 G + +G Sbjct: 282 AFGVKFSRDGS 292 >gi|229828943|ref|ZP_04455012.1| hypothetical protein GCWU000342_01028 [Shuttleworthia satelles DSM 14600] gi|229792106|gb|EEP28220.1| hypothetical protein GCWU000342_01028 [Shuttleworthia satelles DSM 14600] Length = 549 Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 26/281 (9%), Positives = 74/281 (26%), Gaps = 36/281 (12%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 HF + +Q ++A N + + GR GKTTL + + L+++ Sbjct: 65 GHFLKLELYQKAMLQAAYGFLDDNDHRRYQEVLNIV---GRKNGKTTLLSAIQLYMLIA- 120 Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 ++ ++ ++M+ + Sbjct: 121 -DKEGAPECYQIATARDQAMKGFTECVNMVRQSKTIAKHVRKRQSDLY------------ 167 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFW 224 + + +G + DE + + + + + + W Sbjct: 168 ----CDVNMGFIKPLASNTNSLDGLNGHCIVIDELAAIKNRDVYDLMKQSMSSRSQPMLW 223 Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 +T++ F + + + + + + Sbjct: 224 CITTSGFVRESIFDSQYEYAKG---VIEGTIKDERFLPIIYELDKRDEWNQP-------- 272 Query: 285 LGQFPQQEV--NNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323 G++ + ++E + + DD + P ++ D Sbjct: 273 -GKWVKANPGLGTIKSKEFLEGCVGKGKSDDTFLPTVLVKD 312 >gi|149021996|ref|ZP_01835958.1| terminase large subunit [Streptococcus pneumoniae SP23-BS72] gi|147929840|gb|EDK80829.1| terminase large subunit [Streptococcus pneumoniae SP23-BS72] Length = 432 Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 86/291 (29%), Gaps = 25/291 (8%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTI--FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 Q + + + + + ++ + RG K+ A + + P +++ Sbjct: 9 QSDIVIDLPKTVGAGYGQFWRSRNLYRV-VKGSRGSKKSKTTALNYVIRLLKYPWGNLLV 67 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 I K + + + ++L H F+ + + + I Sbjct: 68 IRRYSNTNKQSTYTDFKWACNVLGVTHLFKFNES------------LPEITVKATGQKIL 115 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI-----INKSILGFFTELNPNRFWIMT 227 R +E T + + +EA + +SI G + + +T Sbjct: 116 FRGLDDELKITSITVDIGSLCWAWFEEAYQIETEDKFSTVVESIRGSLDVPDFFKQITVT 175 Query: 228 SNTRRLNGWFYDIF---NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 N W +F D + E +D + Y + ARI Sbjct: 176 FNPWNERHWLKRVFFDEETRRADTFATTTTYKCNEWLDEVDIKRYEDLYHTNPRRARIVC 235 Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335 G++ + +++ E + D L +G D G D T + Sbjct: 236 DGEW-GVAEGLIYENVTVKDFNKDELLRDSANKLCIGLDF-GFTHDPTALC 284 >gi|319762383|ref|YP_004126320.1| terminase large subunit protein [Alicycliphilus denitrificans BC] gi|317116944|gb|ADU99432.1| putative terminase large subunit protein [Alicycliphilus denitrificans BC] Length = 535 Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 43/331 (12%), Positives = 83/331 (25%), Gaps = 43/331 (12%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + RL + Q+LE+ L + +K V G +G+ P+R Q F++ Sbjct: 10 LNRLPDSAQELERCLTDPEWRLFSGCLYKIMVKGDSKDGQEGEAFSMPFVPNRAQRRFIK 69 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + + I R +G TTL A + L IA Sbjct: 70 RLWH--------------RNIILKARQLGFTTLIAILWLDHALFNADQRCGIIAQDREAA 115 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 + +V LP + + + + + Sbjct: 116 EAIFRDKVKYAYQNLPEEIRERF--------PLARDSASELLFAHNNSSVRVATSMRSGT 167 Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240 + PD + + G + ++ S NG FYD+ Sbjct: 168 IHRLHISEFGKI-------CAKFPDKAKEVMTGSIPAVPTTGILVIESTAEGANGEFYDL 220 Query: 241 FNIPL-----------EDWKRYQIDTRTVEGIDSGFHE-GIISRYGLDSDVARIEILGQF 288 D++ + + I D E+ Q Sbjct: 221 SKRSQALHYSHQKLTPRDYRFHFYAWWQEPNYRMDATQVSISREMHDYFDGIEQEMECQI 280 Query: 289 PQQEVNNFIPHNYIE--EAMSREAIDDLYAP 317 ++ ++ + R + P Sbjct: 281 DPEQRAWYVATQQADFPGREERMWQEYPSTP 311 >gi|225855376|ref|YP_002736888.1| phage terminase, large subunit, pbsx family [Streptococcus pneumoniae JJA] gi|225724280|gb|ACO20133.1| phage terminase, large subunit, pbsx family [Streptococcus pneumoniae JJA] Length = 432 Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 86/291 (29%), Gaps = 25/291 (8%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTI--FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 Q + + + + + ++ + RG K+ A + + P +++ Sbjct: 9 QSDIVIDLPKTVGAGYGQFWRSRNLYRV-VKGSRGSKKSKTTALNYVIRLLKYPWGNLLV 67 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 I K + + + ++L H F+ + + + I Sbjct: 68 IRRYSNTNKQSTYTDFKWACNVLGVTHLFKFNES------------LPEITVKATGQKIL 115 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI-----INKSILGFFTELNPNRFWIMT 227 R +E T + + +EA + +SI G + + +T Sbjct: 116 FRGLDDELKITSITVDIGSLCWAWFEEAYQIETEDKFSTVVESIRGSLDVPDFFKQITVT 175 Query: 228 SNTRRLNGWFYDIF---NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 N W +F D + E +D + Y + ARI Sbjct: 176 FNPWNERHWLKRVFFDEETRRADTFATTTTYKCNEWLDEVDIKRYEDLYHTNPRRARIVC 235 Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335 G++ + +++ E + D L +G D G D T + Sbjct: 236 DGEW-GVAEGLIYENVTVKDFNKDELLQDSANKLCIGLDF-GFTHDPTALC 284 >gi|283478675|emb|CAY74591.1| putative terminase large subunit [Erwinia pyrifoliae DSM 12163] Length = 581 Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 29/318 (9%), Positives = 77/318 (24%), Gaps = 55/318 (17%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ + ++ F+ + I +G+G GK+ L + L+L+ P Sbjct: 89 PWQCFIVGSLF----GWKAEDGTRRFRMSYIESGKGSGKSPLAGGVGLYLLMADKEPRAE 144 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 + A + Q L+ + + P + + G++ + Sbjct: 145 VYAAATKKDQAM-ILFRDAVTMVDQSP---------------ALAKRITKSGTGLNVWNL 188 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 + + G DE ++ T+ + +N Sbjct: 189 AFLQTGSFFKPISSDDGQSGPRPHGALIDEVHEHKTNAVVEMMRAGTKGRRQALMFLITN 248 Query: 230 TR-RLNGWFYDIFNIPL---------------------------EDWKRYQIDTRTVEGI 261 + ++ ++ + + + Sbjct: 249 SGHDKTSVCFEYHEYGRKVAAGDLEDDSFFSFICSLDEGDDPFKDETCWGKANPSLGQTF 308 Query: 262 DSGFHEG---IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318 + + + R Q+ + ++ + + Sbjct: 309 TAKYLREQVTQARGMPSKESIVRRLNFCQWVESADPWIDSDTWMNCEQDFDPDELAGEEC 368 Query: 319 IMGCDIAGEGGDKTVVVF 336 G D++G D T + Sbjct: 369 YGGLDLSGS-RDLTALAL 385 >gi|194302950|ref|YP_002014219.1| gp3 [Mycobacterium phage Boomer] gi|194152998|gb|ACF34065.1| gp3 [Mycobacterium phage Boomer] Length = 453 Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 35/326 (10%), Positives = 80/326 (24%), Gaps = 43/326 (13%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 RWQ + A + +I+ R GKT ++ + +RPG ++ Sbjct: 6 DRWQEDIWYAALGLREDGTLACDVMGVTLSIA--RQAGKTWGIMVGLIAICLSRPGTLVV 63 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 ++ + TL +++ + R + + + + Sbjct: 64 WSSHHDRTSSETL-TKIAGIVEKPAIRPKMRP------MHPVVQSDDNRGVHFANGSRIL 116 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 + DE + +L ++ Sbjct: 117 FGARAQGFGRG------FSEVDIQVYDECQNLKESALTDMLAAM-NVSEIGLAFFMGTPP 169 Query: 232 RLNGW---FYDIFNIPLEDW------KRYQIDTRT-VEGIDSGFHEGIISRYGLD----- 276 R +D F + + ++ I + D Sbjct: 170 RPQEVALGVHDAFKRRRDRALEQKKRRPFKGVYVEFAPESPDDVVADIDAPGFWDRLAEA 229 Query: 277 SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI-------MGCDIAGEGG 329 + + ++ V N P + E + + ++ + CD+ G Sbjct: 230 NPSFGHRVGKSAIERLVENMSPEDVRREVFGIWDKTNEVSSVVPGDQWRSLCCDVDDLG- 288 Query: 330 DKTVVVF---RRGNIIEHIFDWSAKL 352 D + R G + WS Sbjct: 289 DVSAFGVSATRSG-WFWIVACWSGVD 313 >gi|167759141|ref|ZP_02431268.1| hypothetical protein CLOSCI_01488 [Clostridium scindens ATCC 35704] gi|167663259|gb|EDS07389.1| hypothetical protein CLOSCI_01488 [Clostridium scindens ATCC 35704] Length = 597 Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 41/317 (12%), Positives = 84/317 (26%), Gaps = 56/317 (17%) Query: 69 NVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWL--ISTRPGMSIICIANSETQLKNTLW 125 F+ + + GR GK+ +N + + I C A + Q N ++ Sbjct: 95 RTKEKGHRRFRTSYVQLGRQNGKSFINGILACYYGNFDGYKYGKIFCTATKQDQA-NIVF 153 Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185 E+ K+++ +E + + T DT Sbjct: 154 DEIVKFIN----------------SDEDLSEWFKVHEHNHTIDCLCTHSEIKALSGDT-K 196 Query: 186 GPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-- 242 DE + + + K + G +L ++T+ L Y ++ Sbjct: 197 SLDGHRAYLGIVDEYHAHKTNQMYKLLEGGIKKLKSALISVITTAGFDLKSPCYKLYEYC 256 Query: 243 --------------------------IPLEDW---KRYQIDTRTVEGIDSGFHEGIISRY 273 E+W Sbjct: 257 CNLLKGVFENDSQFVYIAQLDTADDLYKKENWIKANPILEYDEDALENLVPIANTARDMG 316 Query: 274 GLDSDVARIEILGQFPQQEVNNFIP--HNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDK 331 G D ++ L + Q +I + A R D + +G D++ GGD Sbjct: 317 GEDLRDFLVKQLNMWMQWSNALYIKDIKEWKRCAALRTLKDFRGSKCYVGVDLS-SGGDL 375 Query: 332 TVVVFRRGNIIEHIFDW 348 T + +++ + + Sbjct: 376 TSIAIVIPYMVDGVKKY 392 >gi|28377533|ref|NP_784425.1| prophage Lp1 protein 38 [Lactobacillus plantarum WCFS1] gi|28270365|emb|CAD63266.1| prophage Lp1 protein 38 [Lactobacillus plantarum WCFS1] Length = 428 Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 35/261 (13%), Positives = 78/261 (29%), Gaps = 19/261 (7%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 ++ I RG K+ A +++ + +I+ + + K + + E K ++ Sbjct: 25 YRV-IKGSRGSKKSVTTAHNLIYRLVKYHWSNILVVRRNANTNKTSTFVECKKAINDFHL 83 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 +F+ + I R + T V ++ Sbjct: 84 ERYFKYNES------------LPEITYLPTGQKIVFRGLDDPLKLTSVNVPTGELCWLWV 131 Query: 198 DEASGT-PDIINKSILGFFTELNPNRF--WIMTSNTRRLNGWF-YDIFNIPLEDWKRYQI 253 +EA ++++ +P F +T N + W + F+ P +D Sbjct: 132 EEAYEIESFSKLQTVIESLRGNDPQVFYQVTLTFNPWNEHHWLKREFFDQPRDDTFVRTT 191 Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 R E + + + + S Y + A+ + G++ N + + Sbjct: 192 TVRCNEFVSDEYKQRLYSLYQTNPRRAKTVVDGEW-GVAEGLVFEDNIEQIEFNAMDKIQ 250 Query: 314 LYAPLIMGCDIAGEGGDKTVV 334 G D G D Sbjct: 251 ECGQTGFGLD-YGFSNDPNAF 270 >gi|119357402|ref|YP_912046.1| hypothetical protein Cpha266_1601 [Chlorobium phaeobacteroides DSM 266] gi|119354751|gb|ABL65622.1| protein of unknown function DUF264 [Chlorobium phaeobacteroides DSM 266] Length = 414 Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 75/294 (25%), Gaps = 33/294 (11%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 P K + G G GKT + A ++ + + ++ S Q + T+ + + L Sbjct: 20 LPNFLKVLV-GGYGCGKTHIGALRSIYDSYVNAPVPHLYVSPSYKQARKTVVISIRELLD 78 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 R+ F + + W + I D + Sbjct: 79 AAGVRYRFNKTNHEFAIANW------------NGTIWIASG-------DEPDSLKGPNIG 119 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK--RY 251 + DE + L I + T W +++ + Sbjct: 120 SAGIDEPFIQQKEVFDITLSRVRHPRAKHREIFLTGTPEQLNWGHEVSQNDEGRYDLGLV 179 Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY--IEEAMSRE 309 T + F + Y + + G F V + + + Sbjct: 180 VGRTADNVHLPGQFVSMLERAYDENQRA--AYMNGLFVNLTVGRVYSYFDRSVHMGGAGL 237 Query: 310 AIDDLYAPLIMGCDIAGEGGDK-TVVVFR-RGNIIEHIFDW--SAKLIQETNQE 359 D ++ G D D T VV R G+ + + E Sbjct: 238 GGDGADGEVVAGID---FNVDHLTAVVLRVWGDRVHCFDEMVLRGSTTYELADR 288 >gi|149004553|ref|ZP_01829252.1| terminase large subunit [Streptococcus pneumoniae SP14-BS69] gi|147757556|gb|EDK64580.1| terminase large subunit [Streptococcus pneumoniae SP14-BS69] Length = 420 Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 86/291 (29%), Gaps = 25/291 (8%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTI--FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 Q + + + + + ++ + RG K+ A + + P +++ Sbjct: 9 QSDIVIDLPKTVGAGYGQFWRSRNLYRV-VKGSRGSKKSKTTALNYVIRLLKYPWANLLV 67 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 I K + + + ++L H F+ + + + I Sbjct: 68 IRRYSNTNKQSTYTDFKWACNVLGVTHLFKFNES------------LPEITVKATGQKIL 115 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI-----INKSILGFFTELNPNRFWIMT 227 R +E T + + +EA + +SI G + + +T Sbjct: 116 FRGLDDELKITSITVDVGSLCWAWFEEAYQIETEDKFSTVVESIRGSLDVPDFFKQITVT 175 Query: 228 SNTRRLNGWFYDIF---NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 N W +F D + E +D + Y + ARI Sbjct: 176 FNPWNERHWLKRVFFDEETSRADTFATTTTYKCNEWLDEVDIKRYEDLYHTNPRRARIVC 235 Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335 G++ + +++ E + D L +G D G D T + Sbjct: 236 DGEW-GVAEGLIYENVTVKDFDKDELLRDSANKLCIGLDF-GFTHDPTALC 284 >gi|163737525|ref|ZP_02144942.1| terminase, large subunit [Phaeobacter gallaeciensis BS107] gi|161389051|gb|EDQ13403.1| terminase, large subunit [Phaeobacter gallaeciensis BS107] Length = 587 Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 41/330 (12%), Positives = 90/330 (27%), Gaps = 51/330 (15%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLI--STRPGMS 109 WQ + + + F+ A + R GK+TL A + L+ + PG Sbjct: 88 PWQAFMISQIGGW---RHMVTGLRRFRTAYVEVPRKNGKSTLLAGVGLYFLGPDGEPGAK 144 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 + A S Q + ++ + L E ++ + Sbjct: 145 VYSAAASTHQARIVF-----DAARVMAVTGEADGVGLDEVLGLTVEEHKIKTQDPAAVFQ 199 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPNRFWIMTS 228 I +T S++ + DE + S+ +T+ Sbjct: 200 PIASQTKSKD---------GKNPHCAIVDELHEHDKRDVWDSMASALGAREQPLLIAITT 250 Query: 229 NTRRLNGWFYDIFNIPLEDWK-----------RYQIDTRTVEGIDSGFHEGIISRYGLDS 277 G ++ ++ D + + + S + S Sbjct: 251 AGYNTGGICFEQRKYLQSLLDGDRKNERYFGLIFEADEGDEPSDPATWAKANPSLHTAKS 310 Query: 278 DVARIE----------ILGQFPQQEVNNF--IPHNYIEEAMSREAIDD-------LYAPL 318 + +G+F ++ ++ + + I+ R + D Sbjct: 311 LEYMQDEWEKAAASPAAMGEFLRKHLDIWTSVGAAAIDMEAWRASEDASMTLAQYRGHKA 370 Query: 319 IMGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348 +G D+A +VV + +F W Sbjct: 371 YIGVDLATRRDPASVVALIPDGKLYRLFSW 400 >gi|257792356|ref|YP_003182962.1| phage terminase, large subunit, PBSX family [Eggerthella lenta DSM 2243] gi|257476253|gb|ACV56573.1| phage terminase, large subunit, PBSX family [Eggerthella lenta DSM 2243] Length = 559 Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 38/293 (12%), Positives = 80/293 (27%), Gaps = 28/293 (9%) Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 C + + I + GRG K++ + ++ I P + + +T +++ Sbjct: 140 DFCKPHRMIARREITDVWLGGGRGSMKSSYASLEVVNYIEQNPEQHALVLMKYKTAIRDA 199 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 +A+V + ML +EM +L + S I R + Sbjct: 200 AYAQVVWAIKMLGLEDEYEMPDSTLR------------IKKRSTGQLIIFRGCDNAQKIK 247 Query: 184 FVGPHNTHGMAVFNDEASGTP-DIINKSILGFFTELNPNRFWIMTSNTRRL-NGWFYDIF 241 + H + +EA + + T + + T N R + W Sbjct: 248 SIKVPFGHIGVAWYEEADMFKGMAEIRKVNQSLTRGGNDCIRLYTYNPPRSVHSWINVEM 307 Query: 242 NIPLE-DWKRYQIDTRTVE--GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIP 298 + + + + FH +D E +G+ + F P Sbjct: 308 QRRRDAGEPVFTSNYLNAPREWLGDQFHADAEELKRIDLKAYLHEYMGEAVGMGLEVFDP 367 Query: 299 HNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 + + + L G D + +W Sbjct: 368 EKVV-FREITDEEIAAFDNLKAGQDFGWY----------PDPWAFTLSEWRQN 409 >gi|254884963|ref|ZP_05257673.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|254837756|gb|EET18065.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] Length = 566 Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 62/225 (27%), Gaps = 19/225 (8%) Query: 80 CAISAGRGIGKTTLN----AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 + AGRG+ K+T+ ++ +W + PG + +AN+ LK+ + V K M+ Sbjct: 36 LVVIAGRGMSKSTVIQSRRSYRCIWEM---PGAPLAFVANTYANLKDNIMPAVQKGWEMM 92 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 P W A+ + + D + + Sbjct: 93 GLYEGVHYIRGKEPPVSWKAKCSIIVNDYRNCYSFWNGSVIFMGSLDNPSLLAGKSVVHL 152 Query: 196 FNDEASGTPDIINKSILGFFTE-----LNPNRFWIMTSN---TRRLNGWFYDIFNIP--- 244 F DE+ D + + F +T G + F Sbjct: 153 FYDESKYDKDEKVNRAMPVLRGDSLTYGASHLFLGLTITTDMPDVNEGEYDWYFRYAPNM 212 Query: 245 -LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 + G+ S +AR+E + Sbjct: 213 DPDRIILIVQAAFERNGLLLKQLREQKKDNPSHSVLARLERKIDY 257 >gi|118590957|ref|ZP_01548357.1| hypothetical protein SIAM614_19891 [Stappia aggregata IAM 12614] gi|118436479|gb|EAV43120.1| hypothetical protein SIAM614_19891 [Stappia aggregata IAM 12614] Length = 526 Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 43/336 (12%), Positives = 73/336 (21%), Gaps = 85/336 (25%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT L A + L+ + S LK +L Sbjct: 64 GGGKTDLIAGLALFAHH-----KVAIFRQSLKSLKGLTERM----------------NAL 102 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + P DE + Sbjct: 103 MRQAGMGKISGNPPRWTGPDERLIEFGHL---GLPGAEEDWQGRDHDLKAFDEGAQMDPR 159 Query: 207 --INKSILGFFTELNPNRFWIMTSNTR--RLNGWFYDIFNIPLE---------------- 246 I T ++ +N + D F L+ Sbjct: 160 KIIFVLGWLRTTRKGQRCRGLIATNPPLGGQGDYLSDWFAPWLDPLHPLYGKVQPGEMLW 219 Query: 247 -----DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN------ 295 + + EG I + + +F + + Sbjct: 220 AVFIDEGDAIRTVWVDGPE--PVEIEGEIRTPKSRTFIPARRQDNRFLGTDYDAQLDQMP 277 Query: 296 ----------------------FIPHNYIEEAMSR-EAIDDLYAP-LIMGCDIAGEGGDK 331 IP ++++ A R + D P ++ D+A G D+ Sbjct: 278 EPMRTALKTGDFLAARQDHEWQVIPSDWVDLAFERYDQGIDRDEPMTVLAVDVAQGGKDR 337 Query: 332 TVVVFRRGNIIEHIFDWSAKLIQETNQEGCPVGSSI 367 TV+ G E ++ G VGS I Sbjct: 338 TVLQPLHGRRFETNIVRKGTDTKD----GADVGSLI 369 >gi|149882818|ref|YP_001294797.1| probable terminase [Microbacterium phage Min1] gi|148763449|gb|ABR10467.1| probable terminase [Microbacterium phage Min1] Length = 530 Score = 54.6 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 40/316 (12%), Positives = 78/316 (24%), Gaps = 53/316 (16%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM---- 108 WQ + + K + GR GKT + A + + + G Sbjct: 43 PWQKWLLIHMLELDAFGRLRF----RKALVIVGRQNGKTLIAAVLAAYWLYVDAGRWPDQ 98 Query: 109 -----SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163 I+ A + + W +V +W + + + Sbjct: 99 LPEQDFIVVGAAQKLDIAMKPWRQVRRW------GAPDDPKVGIARDRVPDLQAFTYPPR 152 Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNR 222 + + + P TF G + DE +I + Sbjct: 153 TTNGETELRTHGGAAYLPRTFEGARGQSAARLILDELREQYDYEGWSAIEKS-ANAMFDS 211 Query: 223 FWIMTSNTRRLNGWFYDIF----NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278 + SN + ++D + D+ + S Sbjct: 212 LLVAFSNAGTKRSRVLRDVRQIGHEGVDDRETQWFIAEWSAEPDASLDDERAFAQANPSA 271 Query: 279 VA----------------------RIEILGQFPQQEVNNFIPHNYIEEAMSREA-----I 311 RIE+LGQ+ +V+NFI + R+ Sbjct: 272 GYLAGMTIAGLMRAAAEAKEKNVERIEVLGQWVTAKVDNFIDSEEWKSRH-RDVASIFAR 330 Query: 312 DDLYAPLIMGCDIAGE 327 A + D++ + Sbjct: 331 IPNGARTVWAIDMSHD 346 >gi|325530303|sp|Q66632|TRM3_EHV2 RecName: Full=Tripartite terminase subunit UL15 homolog; AltName: Full=DNA-packaging protein 29; AltName: Full=Terminase large subunit Length = 686 Score = 54.6 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 53/175 (30%), Gaps = 16/175 (9%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GKT + ++ L+++ + + +A+ + + ++ P ++ + Sbjct: 220 PRRHGKTWIVVAIISMLLTSVENIHVGYVAHQKHVANSVFAEIINTIYRWFPAKNVYIK- 278 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + S TC ++ DEA+ Sbjct: 279 ------KENGTIMYTNENRRPSTLMCATCF--------NKNSIRGQTFNLLYVDEANFIK 324 Query: 205 DIINKSILGFFTELNPNRFWIMTSN-TRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 SILGF + + +I + N + + + Y++ N + Sbjct: 325 KDSLPSILGFMLQKDAKIIFISSVNSSDQTTSFLYNLKNAKEKMLNVVNYVCPQH 379 >gi|225574768|ref|ZP_03783378.1| hypothetical protein RUMHYD_02845 [Blautia hydrogenotrophica DSM 10507] gi|225037968|gb|EEG48214.1| hypothetical protein RUMHYD_02845 [Blautia hydrogenotrophica DSM 10507] Length = 428 Score = 54.6 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 47/255 (18%), Positives = 88/255 (34%), Gaps = 21/255 (8%) Query: 79 KCAISAGR-GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS-KWLSMLP 136 + + G G GK+ A L + G ++ICI S+ +++ +AE++ + Sbjct: 20 RYIVMKGSAGSGKSVDTAQNYLLRLMQDKGRNLICIRKSDITNRDSTYAELTGAAYRIFG 79 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA-- 194 + S + + + I E++ + G Sbjct: 80 DQVDRYWNIKQSPLSLTFRP---------NGNQIIFRGVNDEKQREKLKSITFQRGKLTD 130 Query: 195 VFNDEASGTPDIINKSILGFFTE---LNPNRFWIMTSNTRRLNGWFYD-IFNIPLEDWKR 250 V+ +EA+ + I + MT N N W F+ P + Sbjct: 131 VWIEEATEITQADFEIIDDRLRGELPPDQFYQIRMTFNPVNKNHWIKKVFFDTPDSNVLT 190 Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310 + ID+ +H + R +D + +I LG + EV I HN+ E +S+ Sbjct: 191 HHSTYLDNRFIDAAYHARMARRKEVDPEGYQIYGLGNW--GEVGGLILHNWAVENISQNL 248 Query: 311 IDDLYAPLIMGCDIA 325 D Y + +G D Sbjct: 249 --DDYDDIAIGQDFG 261 >gi|117530289|ref|YP_851132.1| terminase [Microcystis phage Ma-LMM01] gi|117165901|dbj|BAF36209.1| terminase [Microcystis phage Ma-LMM01] Length = 592 Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 41/305 (13%), Positives = 88/305 (28%), Gaps = 53/305 (17%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML---------------WLI 102 ++ + + + GR GK+ L + +L + + Sbjct: 70 ILQRWAEQDVTTWVPDRSYV-NMVLECGRRGGKSVLASICVLYEFYCLINLDNPAKHYGL 128 Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162 + ++I IA S Q+ TL+ + + S + + + + Sbjct: 129 LSGSPIAIFVIARSGAQVNETLFGAIRGYASQ---------------SAYFKGLVNSGQI 173 Query: 163 GIDSKHYTITCR-TYSEERPDTFVGPHNTHGMAVFNDEAS---------GTPDIINKSIL 212 I ++ + + + DEA+ D I ++ Sbjct: 174 EILTQEIRCQAKNIAIYAKHTNSQSLVGYSLKMLVLDEAARFEYNELGESKADDIWSNVA 233 Query: 213 GFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED-----WKRYQIDTRTVEGIDSGFHE 267 + I S+ + +++ + D ++ D + + Sbjct: 234 KGLSTFGNKGKKIAISSAWSEGDYIQNLYKVATRDPRMVAFRLRTWDINLRPEVS-EYSL 292 Query: 268 GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE 327 Y D A +E G +F YIEEA+ + D ++ + DI Sbjct: 293 KNSEDYIRDPVTAALEYEGIR-SSMHGSFFQKEYIEEAVKGLSCLDAHS---IPLDI--T 346 Query: 328 GGDKT 332 GD T Sbjct: 347 NGDDT 351 >gi|94694833|gb|ABF47063.1| DNA cleavage and packaging protein large subunit [Human herpesvirus 5] Length = 674 Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 52/175 (29%), Gaps = 18/175 (10%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GKT ++ +L+ G+SI +A+ + L + Sbjct: 213 PRRHGKTWFIIPIISFLLKHMIGISICYVAHQKHVSHFVLQEVEFRCRHT---------- 262 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + E + + ID + T S ++ + + DEA Sbjct: 263 ----FARDYVVENKDNVISIDHRGAKSTALFASCYDTNS---IRGQNFHLLLVDEAHFIK 315 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTV 258 +ILGF + +I ++NT F + N P + Sbjct: 316 KEAFNTILGFLAQNTTKIIFISSTNTTSDATCFLTRLNNAPFDMLNVVSYVCEEH 370 >gi|325281231|ref|YP_004253773.1| hypothetical protein Odosp_2613 [Odoribacter splanchnicus DSM 20712] gi|324313040|gb|ADY33593.1| hypothetical protein Odosp_2613 [Odoribacter splanchnicus DSM 20712] Length = 572 Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 29/205 (14%), Positives = 51/205 (24%), Gaps = 19/205 (9%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 GRG GK+ AW + + T P + QL K L + ++ + Sbjct: 28 GRGTGKSAGIAWDINLINRTMPRALTAVTGQTFGQLLTRTLPSTFKLLESMGYKMHVSAK 87 Query: 145 S-----LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 ++ P + + E+ M D+ D DE Sbjct: 88 DPGNYVINRRPPDHFLQPYEKVMKFDNFISFSNGNGLLLLSQDRAGSARGASVDYEILDE 147 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 A N G F P+ + + Sbjct: 148 ALTINKQRYDEETSPTNRGN--------------EGIFGPHSPQPIPWHHGFHYSSSMPY 193 Query: 260 GIDSGFHEGIISRYGLDSDVARIEI 284 + + I + Y + + EI Sbjct: 194 TAEQKWLLDIGNYYEKERGIRLFEI 218 >gi|258652181|ref|YP_003201337.1| TrwC relaxase [Nakamurella multipartita DSM 44233] gi|258555406|gb|ACV78348.1| TrwC relaxase [Nakamurella multipartita DSM 44233] Length = 1231 Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 42/335 (12%), Positives = 82/335 (24%), Gaps = 38/335 (11%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR---------GIGKTTLNAWM-MLW 100 P R + + + H+ +++GR G GKTT A + +W Sbjct: 508 PDRARRVAGQDLPGRDHALAAEDQRPAAVQIVTSGRVVDVLVGPAGTGKTTTMAGVRAIW 567 Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 PG +++ +A S L A+V + Q Sbjct: 568 EAEYGPG-TVVGLAPS-AMAAQVLAADVGIVTDNTAQWIAQQDQQTRREHRIRLLTDAIT 625 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220 + ++ + R + G + DEA Sbjct: 626 TPENPNRIQGL--RAARGRVQGEYDQWRLRPGQLLIVDEAGMC--GTFTLARLAGQAAKA 681 Query: 221 NRFWIMTSNT--------RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISR 272 ++ + G P + + R Sbjct: 682 GAKLLLVGDPCQLSPVETGGAFGLLCARHPDPATLTQVRRFTDPDGTRRAWEEQAADRLR 741 Query: 273 YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA--PLIMGCDIAGEGGD 330 G + +A + G+ + + + A + D +++ D D Sbjct: 742 SGDSTALAEYDAHGRVRSGDQDQ-----MADNAYTAWLSDTHDGLTSVLIAAD-----ND 791 Query: 331 KTVVVFRRGNIIEHIFDWSAKLIQET-NQEGCPVG 364 TVV + + I + G VG Sbjct: 792 -TVVELNQRARTDLISTGQVDNTATAPVRNGLSVG 825 >gi|29566316|ref|NP_817883.1| gp32 [Mycobacterium phage Corndog] gi|29425041|gb|AAN01964.1| gp32 [Mycobacterium phage Corndog] Length = 503 Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 36/296 (12%), Positives = 75/296 (25%), Gaps = 44/296 (14%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 RWQ + + V F +I R GKT ++ L PG+ I Sbjct: 74 DRWQDGIAGLLLAYRPDGVLAHTVGGFGVSI--PRQCGKTHTLTAVLFGLCVEYPGVLAI 131 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 ++ T A + + + + ++ ++++ + + Sbjct: 132 WTSHHVKTNTETFQA----------VQAYAKRERVAPFIRKVTLGSGDEAVEFANGSRIL 181 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 + +DEA + +L + I Sbjct: 182 FGARERGFGRGIP------GVDVLMSDEAQILTQRAMQDMLATLNT-SRLGLHIYVGTPP 234 Query: 232 RLNGWFYDIFNIPLE-------DWKRYQIDTRTVEGIDS--GFHEG-------------I 269 + + E D + +D + Sbjct: 235 KPTDNSEMFSVMRREAETGEATDIVWIECGAEDTGDLDDIEQWMNANPSCPHRTPVVSIQ 294 Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325 R LD D R E LG + E ++F + + + D + D++ Sbjct: 295 RLRRRLDDDGFRREALGIWDASESSSFDLAAWSDLG---DRGVDAPTRAALVLDMS 347 >gi|192289100|ref|YP_001989705.1| hypothetical protein Rpal_0670 [Rhodopseudomonas palustris TIE-1] gi|192282849|gb|ACE99229.1| protein of unknown function DUF264 [Rhodopseudomonas palustris TIE-1] Length = 441 Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 41/273 (15%), Positives = 83/273 (30%), Gaps = 29/273 (10%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLIS----TRPGMSIICIANSETQLKNTLWAEVSKW 131 + FK + A R GKT + + ++ E Q K + + + Sbjct: 20 SRFKLGMFA-RQTGKTFTTTLEITDDCFEAAVQSRRERWVILSRGERQAKEAMDEGIKRH 78 Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191 F+ Q + LE ++ S+ + P Sbjct: 79 CQAYQLG--FDAQEFDWQGQAGSYKALEVTLPHGSRITAL---------PANPDTARGFS 127 Query: 192 GMAVFNDEASG--TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW- 248 VF DE + I K++ + + R TS + FY++ + W Sbjct: 128 -SNVFLDEFAFHKDSREIWKALFPVISAGHNLRV---TSTGNGKDNKFYELATGKDDVWS 183 Query: 249 KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI---EEA 305 + + + VE + + + D D E ++ + ++ ++ I E+ Sbjct: 184 RHFVDIYKAVEDGLPRNIDELKAGINDD-DAWAQEYELKWLDEAS-AWLSYDLITACEDP 241 Query: 306 MSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338 + + P +G DI D V+ Sbjct: 242 RAGDPSGYRNNPCFVGRDIGRR-NDLHVIWVWE 273 >gi|312872322|ref|ZP_07732392.1| putative phage terminase, large subunit [Lactobacillus iners LEAF 2062A-h1] gi|311092145|gb|EFQ50519.1| putative phage terminase, large subunit [Lactobacillus iners LEAF 2062A-h1] Length = 461 Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 39/298 (13%), Positives = 71/298 (23%), Gaps = 49/298 (16%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +WQ + ++ + + + R GK L W + G I+ Sbjct: 37 QQWQKDLLKDIMAVNDDGLWTHTKFGYSL----PRRNGKNELVVMREFWGLKN--GEEIM 90 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A+ + S W + +++ S+ G LE + + T Sbjct: 91 HTAHRISASH-------SAWEKLCYVLDKAKIEYRSIRAKGQELIELEDGGRVQFRTRTS 143 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 + DEA D S+ + + + I+ Sbjct: 144 NGGL-------------GEGVDLMIIDEAQEYTDDQESSLKYVVSSSHNPQT-ILLGTPP 189 Query: 232 R---------------------LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGII 270 NGW + I Sbjct: 190 TAVSAGTVFPNFRKAVLNGDKPDNGWAEWGVTEKKDVHDVESWYLTNPSLGTIFTERSIR 249 Query: 271 SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEG 328 G D+D I+ LG + + I E + L L +G +G Sbjct: 250 DEIGPDTDDFNIQRLGLWISYNQKSAISSQDWETLQVKRL-PKLVGKLYVGIKFGNDG 306 >gi|225870209|ref|YP_002746156.1| phage terminase, large subunit [Streptococcus equi subsp. equi 4047] gi|225699613|emb|CAW93266.1| putative phage terminase, large subunit [Streptococcus equi subsp. equi 4047] Length = 584 Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 53/358 (14%), Positives = 105/358 (29%), Gaps = 38/358 (10%) Query: 3 RLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAV 62 R ++ +K++ + + + + + F+ P GKP +Q + + Sbjct: 42 RHLNDLKKIDDDNFKFIYLPKKAIDPIIFIELL-PDVKTGKPYPLAM----FQKFIIGNL 96 Query: 63 DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW-LISTRPGM---SIICIANSET 118 ++S K IS R GKT L A ++L+ + + C AN T Sbjct: 97 Y-GWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEFLFGHNPSMSRQLFCTANDRT 155 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 Q K W K LS L + ++ + E + S+ Sbjct: 156 QAK-IAWDMAKKQLSSLRAKDADVRKATKIVRDELKNLHDESYIRALSRDTGAVDGFEPY 214 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL----- 233 T+ M + G D I+ ++ N Sbjct: 215 VGVLDEFAASKTNEMLELLESGQGQLDNPFILIIST-AGMDLNVPMHTIEYPYITKILDE 273 Query: 234 ----NGWFYDIFNIPLEDWKRYQIDT-RTVEGIDSGFHEGIISRYGLDSDVARIEILGQ- 287 +G+F + E + + + ++ ++ + Y +E G+ Sbjct: 274 EIVDDGYFGYVAEQDNEGEIKDESNWIKSNPILEVEALHDKLMDYLRTRRRVSLE-TGEI 332 Query: 288 ----------FPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIM-GCDIAGEGGDKTVV 334 + Q ++I E A R D + + G D+ D + Sbjct: 333 NKVLIKNFNMWRQSSEESYIDKQSWELA--RIDKPDTHKRRVWLGVDVGRV-SDLFAI 387 >gi|228987452|ref|ZP_04147571.1| Prophage LambdaBa02, terminase, large subunit [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772184|gb|EEM20631.1| Prophage LambdaBa02, terminase, large subunit [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 562 Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 37/323 (11%), Positives = 82/323 (25%), Gaps = 38/323 (11%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ + ++ H + I GR GKTT+ + + + ++ PG Sbjct: 80 QPWQHFVIGSLYGWIHKDTGYRRFREGLIFI--GRKNGKTTMISGLSNYAVAKDNEPGAR 137 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK-- 167 + +AN++ Q L+ E + P ++ +E K Sbjct: 138 VYVLANTKQQAGE-LFDESRAMVQKSPLLRKHLRENQKGIFHDKTHSKIEPRASDSKKLD 196 Query: 168 ---------HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--------KS 210 + + M V+ A + Sbjct: 197 GLNTHLGIFDEIHEFKNFKLINVIKKSRGARKQPMIVYITTAGYQLEGPLVQYYEIATDV 256 Query: 211 ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGII 270 + G + F N + I P + + + ++ Sbjct: 257 LEGVIDQDRKFYFMAEMDNVDEIENPELWIKANPN------MGVSLDLPSLIDDWNTDKH 310 Query: 271 SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLIMGCDIAGEGG 329 + + + + F + +F+ ++ + + G D++ Sbjct: 311 TDAEKNDWITKQF--NIFVDNDEMSFVGIEILKRNEGVIDIKGLAGKECVAGYDLSAT-E 367 Query: 330 DKTVVV----FRRGNIIEHIFDW 348 D T GN+ W Sbjct: 368 DFTSACLEFPLDDGNVFVLSHSW 390 >gi|307319529|ref|ZP_07598956.1| protein of unknown function DUF264 [Sinorhizobium meliloti AK83] gi|306894901|gb|EFN25660.1| protein of unknown function DUF264 [Sinorhizobium meliloti AK83] Length = 419 Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 31/285 (10%), Positives = 76/285 (26%), Gaps = 54/285 (18%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE-VSKWLSMLPHRHW 140 + G GKT + ++ PG + K ++W++ + K L++ Sbjct: 2 LRGGSRSGKTFVLCRALIQRAINAPGSRHVIFRFRFNHAKTSVWSDTLPKVLALCFPSVR 61 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + + + + +ER + ++ +E+ Sbjct: 62 VRFDKTDFY------------VELPNGSQIWIAGLDDKERVEK---ILGQEYATLYFNES 106 Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTS--------------NTRRLNGWFYDIFN---- 242 S P ++ + + I + N W + +F Sbjct: 107 SQIPWASVETAMSRLAQKCELAPAIAAATGRRYLALKAYFDCNPPSKLHWSFQMFRAKMK 166 Query: 243 -------IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL-GQFPQQEVN 294 ED+ Q++ + +++ S R+ G++ + Sbjct: 167 PGTKEKLAKPEDYAEMQVNPADNSENLPPEYFEVLASM---SAAKRLRFEAGEWASEVSG 223 Query: 295 NFIPHNYIEEAMS---------REAIDDLYAPLIMGCDIAGEGGD 330 + R A +++ D +G GD Sbjct: 224 ALWALEDRKAPDGKLMPGIDSLRVASAPEMRRIVVSVDPSGTRGD 268 >gi|172041092|ref|YP_001800806.1| hypothetical protein cur_1412 [Corynebacterium urealyticum DSM 7109] gi|171852396|emb|CAQ05372.1| hypothetical protein cu1412 [Corynebacterium urealyticum DSM 7109] Length = 480 Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 43/325 (13%), Positives = 79/325 (24%), Gaps = 47/325 (14%) Query: 27 SFKNFVMRFFPWGIKGKPLEHFSQ--PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISA 84 S+ F L P +Q +E+ S+ + +S Sbjct: 13 SYSFFPTITASDATDAIELSEAYGLTPDPFQRFVLESWKARRADGKLASS----RVGLSV 68 Query: 85 GRGIGKT-TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 R GK L A + ++ G ++ A+ + + ++ + + Sbjct: 69 PRQNGKNGALEASELFDILVL--GRKVLHTAHETKTSQQA-FRRLASFFRPEVNPDLARQ 125 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 +G A +L + RT + + DEA Sbjct: 126 VEQIRQVNGQEAIVLR-----NGGEIRFIARTKNSG--------RGFTADTLVLDEAQEL 172 Query: 204 PDIINKSILGFFTEL-NPNRFWIMTSNTRRLNGWFY-----DIFNIPLEDWKRYQIDTRT 257 ++L + + I D + I+ Sbjct: 173 NMEALGALLPAISSGPAGDPQQIYLGTPPGPTNDGEIFTKLRNDGHEATDPRLSWIEWSA 232 Query: 258 VEGIDSGFHEGII-----------------SRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 G D E R LD + E LG + +E IP Sbjct: 233 DRGCDLDDTEQWAQANPALGTRLMWDVVYDERAALDDETFARERLGMWSTEESARVIPQA 292 Query: 301 YIEEAMSREAIDDLYAPLIMGCDIA 325 E D + + DI+ Sbjct: 293 DWEACAEPNMR-DAGGEVAIAVDIS 316 >gi|239621431|ref|ZP_04664462.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515892|gb|EEQ55759.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 536 Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 34/323 (10%), Positives = 70/323 (21%), Gaps = 62/323 (19%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR------- 105 WQ + K + R GKTTL + W + Sbjct: 55 PWQQWLLVHALELLEDGSYRF----RKVIVLVARQNGKTTLMGVLAAWWLFVDSNKHPDR 110 Query: 106 -PGMSIICI-ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163 P + + + A + +V +W + P + Q Sbjct: 111 VPPVKFLVVGAAQTLDNAKGPYNQVKEWCNPAP------ATDEEEDLVIPDLAAMTQKFV 164 Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFF------- 215 + I R+ + V DE D ++ Sbjct: 165 NTNGEEAIITRSKARYIVRADKNIRAKSAARVVFDELREQHTDDGWNAVSQTTKAVWSSQ 224 Query: 216 ---------------------------------TELNPNRFWIMTSNTRRLNGWFYDIFN 242 + ++ G+F Sbjct: 225 LWGISNAGDYRSVALRKQVDKGRKLVDEWTRLSADGGDPADVFLSGEQDGSFGYFEWSAP 284 Query: 243 --IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 P++D + ++ G+ R E+L Q+ ++ FI Sbjct: 285 DKCPVDDADAIRQANPSLGYGPMTVMSVRSDIDGMTEAAFRTEVLCQWVTADIIPFINPK 344 Query: 301 YIEEAMSREAIDDLYAPLIMGCD 323 + + +++ D Sbjct: 345 MWAGGIDSRSTIPNENRVVLSVD 367 >gi|294677863|ref|YP_003578478.1| phage terminase large subunit [Rhodobacter capsulatus SB 1003] gi|294476683|gb|ADE86071.1| phage terminase, large subunit [Rhodobacter capsulatus SB 1003] Length = 537 Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 39/320 (12%), Positives = 85/320 (26%), Gaps = 51/320 (15%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS--TRPGMSI 110 WQ + + + +F RG KT+L A + L + R Sbjct: 50 PWQERIVRRIYGPRDAQGARVVKMVFLMI---PRGNRKTSLAAALALLHLLGPERVPAGQ 106 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 I A S+ + + E ++ + + L+ + + ++ + Sbjct: 107 IIFAASDREQAGIGFREAAEIIR----QDRRLEAVTRLYDAHNAPKAIKSTRDG------ 156 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMTSN 229 + + H T V DE + +++ + I T+ Sbjct: 157 ----SALKAVSSDGRAQHGTTPTFVLADEIHVWQGRELWEALQSGMAKRAGGLTVIATTA 212 Query: 230 TRRLNGWFYDIFNIPLE----------------------DWKRYQIDTRTVEGIDSGF-- 265 R G +++ DW+ + R G+ GF Sbjct: 213 GRGNEGLAAELYAYARGVALGQIVNPEFLPILFEPDPGADWEDEALWHRVNPGLAHGFPD 272 Query: 266 ------HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD-LYAPL 318 + L ++ + + + + + +D P Sbjct: 273 LDGLRSLARKAKDSPGERYSFEQFNLNRWLGNSRDPLFDFDTYDARVFDDDEEDLEQLPC 332 Query: 319 IMGCDIAGEGGDKTVVVFRR 338 +G D++ G VV Sbjct: 333 WLGVDLSRSGDLTAVVAAFH 352 >gi|302336014|ref|YP_003801221.1| Terminase [Olsenella uli DSM 7084] gi|301319854|gb|ADK68341.1| Terminase [Olsenella uli DSM 7084] Length = 520 Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 37/325 (11%), Positives = 67/325 (20%), Gaps = 57/325 (17%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 WQ + + + R GKT + + L+ + +I Sbjct: 43 RPWQRWLLIHALEVVGDFGGDWHLRFSTVLTLVARQNGKTAVIGVVTLYWLYMLHAALVI 102 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 +A T+ +T + AEL+ G + + Sbjct: 103 GMAQDLTRSGDT------------WDAAVAMVDDTPS----LRAELVRPKRGNSGRDLVL 146 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNRFWI----- 225 T R + +P T V DE ++ W Sbjct: 147 THRRHYVTKPPTRGAGRGPSAQLVIMDEMREQQSWDAWDAMADTTLTQENGIIWCASNAG 206 Query: 226 ----------------MTSNTRR-----------------LNGWFYDIFNIPLEDWKRYQ 252 + G F + W Sbjct: 207 DALSIVLRSKRFQALRAIGDPDGWRVSQKDLAALNLPEDEALGLFEWSAAPGRDVWDTEG 266 Query: 253 IDTRTVEGIDSGFHEGIISRY-GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311 + + G AR E L QF + P E + Sbjct: 267 WREANPSLGHGLTERKLRASISGKTEAGARTENLCQFVGVTEDPPFPDGAWEAGTDAASE 326 Query: 312 DDLYAPLIMGCDIAGEGGDKTVVVF 336 + L D++ + + Sbjct: 327 IAPDSTLWWAIDVS-ANRMHSCIAV 350 >gi|328882907|emb|CCA56146.1| Phage terminase large subunit [Streptomyces venezuelae ATCC 10712] Length = 603 Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 25/265 (9%), Positives = 50/265 (18%), Gaps = 33/265 (12%) Query: 53 RWQL-EFMEAVD--VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PG 107 WQ E + + VH + I R GK+ L + + L+++ Sbjct: 92 PWQEHEIIRPLFGEVHWSDQWGRYVRRYTRATIVMARKNGKSALLSGIALYMLCGDGEES 151 Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 I A + Q + + Sbjct: 152 AEIYGAAATTRQAGKVFEPCTKMVRKSPILAKRLTHIKNVRRL-----------VDERTG 200 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227 + E P DE PD + + Sbjct: 201 SHY-------EVIPADADNELGHSPHCFILDEVLSQPDDSLWKAMRTAAGARTQALMLAI 253 Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287 + + F F + + F + D + Sbjct: 254 TTETNQHVSFGADFIDEADR------VAEQPQRAPHHFVFVRKAPRTQDELDRLHRLY-- 305 Query: 288 FPQQEVNNFIPHNYIEEAMSREAID 312 + + + +E Sbjct: 306 --PGRPDLPVSIDPWDEDNWYWPNP 328 >gi|302519879|ref|ZP_07272221.1| conserved hypothetical protein [Streptomyces sp. SPB78] gi|302428774|gb|EFL00590.1| conserved hypothetical protein [Streptomyces sp. SPB78] Length = 552 Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 49/390 (12%), Positives = 86/390 (22%), Gaps = 67/390 (17%) Query: 38 WGIKGKPLEHFSQPHRWQ-------LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90 W + + P R + E E V + N + + IS RG GK Sbjct: 17 WQVLDWMTAFLAAPDRAEYEPYVPTAEMAEFVLRYYELNPITGRRIVRRGVISRPRGWGK 76 Query: 91 TTLNAWMML-----------WLISTRP---------GMSIICIANSETQLKNTLWAEVSK 130 + + + L W P + A +E Q +N+ + Sbjct: 77 SPFVSAIALAEACGPVVPNGWDADGEPVGMGWDRVRTPLVQLAAATEKQTENSWMPLLEM 136 Query: 131 WLSMLP-HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189 S + E ++ E + S E G Sbjct: 137 ARSGPVLDEYGLEPLDTVVYLRRGKIEPITASATSAKGAKACFASLDQTEDWLPANGGRK 196 Query: 190 THGMAVFNDEASGT------PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243 FN A E + + + R +G YD Sbjct: 197 LAKTMRFN--AGKIGGSLIETPNAFTPGEDSVAEQSAADWKAIREGRSRGSGLLYDHREA 254 Query: 244 PLE------------------------DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279 P + D D Sbjct: 255 PADTDMTDEQSLVYGLRVAYGDSSDHPDGCVLHDPPCAPGWSPIERLAADFWDTSNDPQE 314 Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG----DKTVV- 334 R + L Q ++++ + A + + +++G D + D T + Sbjct: 315 LRADYLNQ-ITHAADSWLSEPEVRAASDLGKVVEPGERIVLGFDGSRRRNRKVTDATALV 373 Query: 335 -VFRRGNIIEHIFDWSAKLIQETNQEGCPV 363 + I W PV Sbjct: 374 GCRLSDGHVFPIGVWEQPDGAAGRDWQVPV 403 >gi|20026680|ref|NP_612722.1| DNA packaging terminase subunit 1 [Panine herpesvirus 2] gi|19881108|gb|AAM00728.1|AF480884_80 DNA packaging protein UL89 [Panine herpesvirus 2] Length = 672 Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 24/175 (13%), Positives = 46/175 (26%), Gaps = 18/175 (10%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GKT ++ +L+ G+SI +A+ + + L + Sbjct: 211 PRRHGKTWFIIPIISFLLKHMIGISIGYVAHQKHVSQFVLKEVEFRC----------RYT 260 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + ++ T + + DEA Sbjct: 261 FARDYLVENKDNVISIDHRGAK-------STALFASCYNTNSIRGQNFHLLLVDEAHFIK 313 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTV 258 +ILGF + +I ++NT F + N P + Sbjct: 314 KEAFNTILGFLAQNTTKIIFISSTNTTSDATCFLTRLNNAPFDMLNVVSYVCEEH 368 >gi|222149246|ref|YP_002550203.1| hypothetical protein Avi_3048 [Agrobacterium vitis S4] gi|221736230|gb|ACM37193.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 452 Score = 53.8 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 81/276 (29%), Gaps = 34/276 (12%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLIST----RPGMSIICIANSETQLKNTLWAEVS-- 129 + FK + A R GKT + + ++ E Q + + + Sbjct: 20 SRFKLGMFA-RQTGKTFTTTLETVDTCFEAAVSGKRERWVILSRGERQAREAMNEGIKVH 78 Query: 130 -KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188 K + F+ + S + LE ++ SK + P Sbjct: 79 CKAYDLAFQEAEFDWEGES-----GTHKALEVTLPHGSKITAL---------PANPDTAR 124 Query: 189 NTHGMAVFNDEASG--TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246 VF DE + I +++ ++ R TS + FY++ P++ Sbjct: 125 GFSAN-VFLDEFAFHKDSQQIWRALFPVISKGWNIRV---TSTPNGKSNKFYELATGPID 180 Query: 247 D-WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA 305 D W R+ +D + D D E ++ + ++ ++ I Sbjct: 181 DPWSRHVVDIYQAVRDGLPRDIEELRAGLADEDSWAQEFELKWLDEAS-AWLSYDLISSC 239 Query: 306 MSR---EAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338 + +G DI D V+ Sbjct: 240 EDERAGDPEGYQGNVCFVGRDIGRR-EDLHVIWVWE 274 >gi|226949140|ref|YP_002804231.1| putative phage terminase, large subunit [Clostridium botulinum A2 str. Kyoto] gi|226841904|gb|ACO84570.1| putative phage terminase, large subunit [Clostridium botulinum A2 str. Kyoto] Length = 572 Score = 53.8 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 43/291 (14%), Positives = 90/291 (30%), Gaps = 31/291 (10%) Query: 70 VNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWL--ISTRPGMSIICIANSETQLKNTLWA 126 + F+ + I GR GK+ LN + +L S I C+A Q K +W Sbjct: 91 TKDKEYRRFRSSYIQLGRQNGKSFLNGILGTYLGNFSGYKYGKIFCVATKHDQAK-IVWD 149 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 E++K++ E+ ++ + S L + + Sbjct: 150 EMNKFIQS--DDDLGELFTVQEYKSTIICNLTNTVIKALGRDTKGLDGLRPLLTVIDEYH 207 Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR-----------FWIMTSNTRRLNG 235 H + M + I +S++ T I+ + + Sbjct: 208 AHKDNQMYKLMEGGQK---KIKQSLISVITTAGFELESPCHKMYKYCKQILEGTEKNESK 264 Query: 236 WFYDIFNIPLEDWKRYQIDTRTVEGIDSG---------FHEGIISRYGLDSDVARIEILG 286 + Y +D YQ + + ++ + D + + L Sbjct: 265 FIYIAEMDEEDDLNNYQNWIKANPMLQYDREALENLIPVYKSAKAIGSKDWNDFLTKQLN 324 Query: 287 QFPQQEVNNFIPHNYIEEAMSREAIDD-LYAPLIMGCDIAGEGGDKTVVVF 336 + + ++ + S + ++D I+G D++ GGD T + F Sbjct: 325 MWVEFTETKYMNMTAWNKCASNKTLEDFRGQEFILGIDLS-SGGDLTSICF 374 >gi|316934282|ref|YP_004109264.1| hypothetical protein Rpdx1_2950 [Rhodopseudomonas palustris DX-1] gi|315601996|gb|ADU44531.1| hypothetical protein Rpdx1_2950 [Rhodopseudomonas palustris DX-1] Length = 532 Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 33/271 (12%), Positives = 67/271 (24%), Gaps = 31/271 (11%) Query: 11 LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70 EQE + F + K ++ FS + Q F V+ Sbjct: 3 TEQEKAALR--KRFYEDFDFYARHALKVRTKSNEVKPFSM-NAVQRRFHAEVEDQRRRTG 59 Query: 71 NNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK 130 + I GR G +T + +S R + +A+ + L+ + Sbjct: 60 ------RVRKIILKGRQQGFSTYVSARKYSRLSQRKARKGLVVAHKADSTR-ALFDMYQR 112 Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190 + ++ P + E +D+ T R +T H Sbjct: 113 YHTLCP--PMLRPTTKYSSRKELVFE------KLDTGIMVATAGGDGVARGETISDAH-- 162 Query: 191 HGMAVFNDEASGTPDIINKSILGFF--TELNPNRFWIMTSNTRRLNGWF---YDIFNIPL 245 E + P + N + + +T F +D Sbjct: 163 ------LSEIAFWPQDTAEDNFNSLYQCIPNSDDTEVYIESTANGFNLFKTLWDAAVAGE 216 Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLD 276 +++ + G + Sbjct: 217 TEFEPFFAAWFETPEYRMPVPAGFERTLEEE 247 >gi|260654759|ref|ZP_05860247.1| putative phage terminase, large subunit [Jonquetella anthropi E3_33 E1] gi|260630474|gb|EEX48668.1| putative phage terminase, large subunit [Jonquetella anthropi E3_33 E1] Length = 514 Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 35/308 (11%), Positives = 78/308 (25%), Gaps = 56/308 (18%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ F+ + N T + + R GK+ L A + L+++ PG Sbjct: 32 QPWQEVFLRELFGRVDRNGLRQYRTCY---VEVPRKNGKSELAAAIALYMLFGDGEPGAE 88 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I A+ Q A + + + + Q++ D+ Sbjct: 89 IYSAASERNQAALVFNAAAAMVRASPSLTKRCRIIDSQKRIVYYKNNSFYQAISADA--- 145 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTS 228 H + V DE P+ + ++ +T+ Sbjct: 146 ---------------DTKHGFNAHCVIYDELHTAPNRNLWDTLATSMGARRQPLMLAITT 190 Query: 229 NTRRLNGWFYDIFNIPL----------------------EDWKRYQIDTRTVEGIDSGFH 266 +++ + +DW + + + Sbjct: 191 AGWDRTSICWELHDYAQKIRQGMLQDSTFLPVIYGAEENDDWGSEKTWKKANPNLGVSVK 250 Query: 267 EGIISRYGLD-------SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD--LYAP 317 + + R L Q+ + ++ + + A D P Sbjct: 251 LNFLQTEYKKALEIPAFENSFRRLYLDQW-TSQETRWLAMTDWDACDAGPADLDELENEP 309 Query: 318 LIMGCDIA 325 +G D++ Sbjct: 310 CYVGVDLS 317 >gi|331269396|ref|YP_004395888.1| phage terminase, large subunit, PBSX family [Clostridium botulinum BKT015925] gi|329125946|gb|AEB75891.1| phage terminase, large subunit, PBSX family [Clostridium botulinum BKT015925] Length = 419 Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 31/263 (11%), Positives = 71/263 (26%), Gaps = 25/263 (9%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAEVSKWLSMLP 136 + GRG K++ + ++ I + + + L+ +++ ++ + L Sbjct: 32 WLKGGRGSTKSSFISIEIILNIMKDSQEEKLTNAVIFRRVKDTLRGSVFEQMLWAIGKLK 91 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 +E+ L + + G D+ + + + Sbjct: 92 CESQWEVNFSPLKLTFKSTGQVVLFKGADNPLKMKSIKVAKGYI---------KYIWYEE 142 Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN-GWFYDIFNIPLEDWKRYQIDT 255 DE G I ++I P + N W +D + + Sbjct: 143 VDEFEGYDKI--RNINQSLMRGGPKFCVFYSFNPPESQRNWANMEVLQTRKDKLVHHSNY 200 Query: 256 RTVE--GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 +V + F ++ + LG + I + + Sbjct: 201 LSVPKEWLGEQFILEAEHIKKVNPTKYEHDYLGA-VTGTGGEVFTNVTIRKM--TDEEIA 257 Query: 314 LYAPLIMGCDIAGEGGD---KTV 333 + + G D G D TV Sbjct: 258 NFDRVHRGLDF-GYASDPLHYTV 279 >gi|333027410|ref|ZP_08455474.1| putative phage terminase [Streptomyces sp. Tu6071] gi|332747262|gb|EGJ77703.1| putative phage terminase [Streptomyces sp. Tu6071] Length = 423 Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 32/260 (12%), Positives = 70/260 (26%), Gaps = 29/260 (11%) Query: 91 TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150 + +A + +W + R G ++ + + + + + + Sbjct: 16 SAASARINIWHGAIRSGKTVASLIAFLISVSTAPASGLIVIVGRSLQTIERNVLDPLQDD 75 Query: 151 SGWYAELLEQSMGIDSKHYTITCRTY---SEERPDTFVGPHNTHGMAVFNDEASGTPDII 207 + + + + TI RT + DEA+ P Sbjct: 76 ALFGLIARQVVHTRGATVATILGRTVHLVGAADSRAEGRLRGLTAALAYVDEATLIPRGF 135 Query: 208 NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF--NIPLEDWKRYQIDTRTVEGIDSGF 265 +LG + T+N W F D + + +D+ + Sbjct: 136 WNQLLGRLSVPGARLL--ATTNPDNPGHWLKKEFLDREGELDLRSWHFTLDDNPALDAAY 193 Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFI-----PHNYIEE--AMSREA-------I 311 + S Y R I G + Q + + + + R Sbjct: 194 VTSLKSEYTG--LWYRRFIAGHWV-QSEGAIYETFDPARHVVRDLPRIDRWVCDAIDYGT 250 Query: 312 DDLYAPLIMGCDIAGEGGDK 331 + YA +++G G D+ Sbjct: 251 VNPYADVLLGV-----GADR 265 >gi|186472255|ref|YP_001859597.1| terminase [Burkholderia phymatum STM815] gi|184194587|gb|ACC72551.1| Terminase [Burkholderia phymatum STM815] Length = 581 Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 37/322 (11%), Positives = 90/322 (27%), Gaps = 55/322 (17%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS-II 111 WQ + ++ + + + + AG+G GK+ L A + L++++ M I Sbjct: 87 PWQKFIVGSLFGWKRRDGSRRFREAY---VEAGKGCGKSPLAAGVGLYMLTADGEMRPEI 143 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A + L+ + + + P E+ + + + Sbjct: 144 YAAATRRDQAMILFRDAVAMVDLSP-----ELSNRLVKSGRGERCYNLAY--YAKGGWFR 196 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT- 230 + S + DE D +I+ + M +N+ Sbjct: 197 PIASDSSGQS-------GPRPHCALIDEIHEHRDPTVINIMRAGKKGRSQPLLFMITNSG 249 Query: 231 RRLNGWFYDIFNIPLE---------------------------DWKRYQIDTRTVEGIDS 263 ++ + +++ + I Sbjct: 250 FDRTSICWEQHQYGTNIVSRAIEDDAYFAYICALDEDEEPFEDESCWIKVNPSLGKTIQK 309 Query: 264 GFHEGIISR-YGLDSDVARIEIL--GQFPQQEVNNFIPHNYIEEAMSREAIDD--LYAPL 318 + I + G+ S + + L Q+ N +I + + D+ + Sbjct: 310 TYLREQIHQARGMPSQESTVRRLNFCQWVD-AENPWIDGDLWRACEVEDLPDEVFAGRTV 368 Query: 319 IMGCDIAGEGGDKTVVV--FRR 338 G D++G D + + R+ Sbjct: 369 YGGLDLSGV-RDLSALAYVVRQ 389 >gi|226940436|ref|YP_002795510.1| Terminase large subunit [Laribacter hongkongensis HLHK9] gi|226715363|gb|ACO74501.1| Terminase large subunit [Laribacter hongkongensis HLHK9] Length = 93 Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 10/82 (12%) Query: 8 DQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCH 67 ++ EL E+ AEC + + + WG LE + P WQ E M + H Sbjct: 1 MADIDDELIEL--AAECATDPLRWALHAYDWGRG--ELEGVTGPRAWQREVMSDIGNHLK 56 Query: 68 SNVNNSNPTIFKCAISAGRGIG 89 + + AGRG+G Sbjct: 57 NPATRFSAFD------AGRGLG 72 >gi|56419063|ref|YP_146381.1| phage-terminase large subunit [Geobacillus kaustophilus HTA426] gi|56378905|dbj|BAD74813.1| phage-terminase large subunit [Geobacillus kaustophilus HTA426] Length = 571 Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 35/316 (11%), Positives = 82/316 (25%), Gaps = 56/316 (17%) Query: 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSII 111 WQ + ++ H + + GR GK+T+ + + + S G + Sbjct: 91 WQHFIIGSLYGWVHKDTGLRRFKEGLVFV--GRKNGKSTMVSGLANYGCSKDGEKGADVY 148 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 +ANS Q + S F + ++H ++++ Sbjct: 149 LLANSMKQARVIFEECQKMIWSSHLLFKHFRVLRDAIHYDKTFSKIEP------------ 196 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 + + DE D +++ T + + Sbjct: 197 --------QASDSEKLDGLNAHLAIFDEIHEYKDYKLINVIKNSTGARRQPLILYITTAG 248 Query: 232 RL-NGWFYDIFNIPL--------------------------EDWKRYQIDTRTVEGIDSG 264 +G D ++ + + + +D Sbjct: 249 YQLDGPLVDYYSKAADVLDGVIEDERSFYFIAEVDEGDDIEDPKNWIKANPNIGVTLDLD 308 Query: 265 -FHEGI--ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR-EAIDDLYAPLIM 320 E + + + L F + + +F+ + I+ + + P I Sbjct: 309 TLIEEWNARKHIPAERNDFITKRLNVFVKSDEQSFLDYEVIKRNDKTIDIEKLVGMPCIG 368 Query: 321 GCDIAGEGGDKTVVVF 336 G D++ D T Sbjct: 369 GFDLSQT-EDFTSACL 383 >gi|222151209|ref|YP_002560363.1| terminase, large subunit [Macrococcus caseolyticus JCSC5402] gi|222120332|dbj|BAH17667.1| terminase, large subunit [Macrococcus caseolyticus JCSC5402] Length = 430 Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 66/236 (27%), Gaps = 39/236 (16%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP-HRHW 140 + G G K+ A ++ + + + + ++++ ++ + + L + Sbjct: 29 LVGGYGSSKSYHVALKIILKLIS-EKRKALVVREVFETIRDSCFSLFEEIIYDLELNTKG 87 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + + + + + I ++P ++ +E Sbjct: 88 VRLTTSPMK------------ITFPNGSQIIFKGM---DKPGKLKSI--NDISLIWLEEC 130 Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-------------- 246 S K ++G + I+++N + W Y F I + Sbjct: 131 SEIKYAGFKELIGRLRHPRLRNYMILSTNPVSKSNWTYLHFFINKDAKVIKLDDYRLYKE 190 Query: 247 ------DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 D + + + + D D+ R+ LGQF Sbjct: 191 KTIVLGDTYYHHSTADDNYFLPDDYIAQLDDMKNYDIDLHRVARLGQFGANGKKVL 246 >gi|206975237|ref|ZP_03236151.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus cereus H3081.97] gi|206746658|gb|EDZ58051.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus cereus H3081.97] Length = 590 Score = 53.4 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 37/323 (11%), Positives = 82/323 (25%), Gaps = 38/323 (11%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ + ++ H + I GR GKTT+ + + + ++ PG Sbjct: 108 QPWQHFVIGSLYGWIHKDTGYRRFREGLIFI--GRKNGKTTMISGLSNYAVAKDNEPGAR 165 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK-- 167 + +AN++ Q L+ E + P ++ +E K Sbjct: 166 VYVLANTKQQAGE-LFDESRAMVQKSPLLRKHLRENQKGIFHDKTHSKIEPRASDSKKLD 224 Query: 168 ---------HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--------KS 210 + + M V+ A + Sbjct: 225 GLNTHLGIFDEIHEFKNFKLINVIKKSRGARKQPMIVYITTAGYQLEGPLVQYYEIATDV 284 Query: 211 ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGII 270 + G + F N + I P + + + ++ Sbjct: 285 LEGIIDQDRKFYFMAEMDNVDEIENPELWIKANPN------MGVSLDLPSLIDDWNTDKH 338 Query: 271 SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLIMGCDIAGEGG 329 + + + + F + +F+ ++ + + G D++ Sbjct: 339 TDAEKNDWITKQF--NIFVDNDEMSFVGIEILKRNEGVIDIKGLAGKECVAGYDLSAT-E 395 Query: 330 DKTVVV----FRRGNIIEHIFDW 348 D T GN+ W Sbjct: 396 DFTSACLEFPLDDGNVFVLSHSW 418 >gi|94694803|gb|ABF47048.1| DNA cleavage and packaging protein large subunit [Human herpesvirus 5] gi|94694815|gb|ABF47054.1| DNA cleavage and packaging protein large subunit [Human herpesvirus 5] gi|94694825|gb|ABF47059.1| DNA cleavage and packaging protein large subunit [Human herpesvirus 5] gi|94694853|gb|ABF47073.1| DNA cleavage and packaging protein large subunit [Human herpesvirus 5] gi|94694857|gb|ABF47075.1| DNA cleavage and packaging protein large subunit [Human herpesvirus 5] gi|222354519|gb|ACM48067.1| DNA packaging terminase subunit 1 [Human herpesvirus 5] gi|239909445|gb|ACS32392.1| DNA packaging terminase subunit 1 [Human herpesvirus 5] Length = 674 Score = 53.4 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 18/175 (10%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GKT ++ +L+ G+SI +A+ + + + EV RH F Sbjct: 213 PRRHGKTWFIIPIISFLLKHMIGISIGYVAHQKH-VSQFVLKEVE-----FRCRHTFA-- 264 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + E + + ID + T S ++ + + DEA Sbjct: 265 ------RDYVVENKDNVISIDHRGAKSTALFASCYNTNS---IRGQNFHLLLVDEAHFIK 315 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTV 258 +ILGF + +I ++NT F + N P + Sbjct: 316 KEAFNTILGFLAQNTTKIIFISSTNTTSDATCFLTRLNNAPFDMLNVVSYVCEEH 370 >gi|94694837|gb|ABF47065.1| DNA cleavage and packaging protein large subunit [Human herpesvirus 5] Length = 674 Score = 53.4 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 18/175 (10%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GKT ++ +L+ G+SI +A+ + + + EV RH F Sbjct: 213 PRRHGKTWFIIPIISFLLKHMIGISIGYVAHQKH-VSQFVLKEVE-----FRCRHTFA-- 264 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + E + + ID + T S ++ + + DEA Sbjct: 265 ------RDYVVENKDNVISIDHRGAKSTALFASCYNTNS---IRGQNFHLLLVDEAHFIK 315 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTV 258 +ILGF + +I ++NT F + N P + Sbjct: 316 KEAFNTILGFLAQNTTKIIFISSTNTTSDATCFLTRLNNAPFDMLNVVSYVCEEH 370 >gi|94694821|gb|ABF47057.1| DNA cleavage and packaging protein large subunit [Human herpesvirus 5] gi|94694847|gb|ABF47070.1| DNA cleavage and packaging protein large subunit [Human herpesvirus 5] gi|219879683|gb|ACL51158.1| DNA packaging terminase subunit 1 [Human herpesvirus 5] Length = 674 Score = 53.4 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 18/175 (10%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GKT ++ +L+ G+SI +A+ + + + EV RH F Sbjct: 213 PRRHGKTWFIIPIISFLLKHMIGISIGYVAHQKH-VSQFVLKEVE-----FRCRHTFA-- 264 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + E + + ID + T S ++ + + DEA Sbjct: 265 ------RDYVVENKDNVISIDHRGAKSTALFASCYNTNS---IRGQNFHLLLVDEAHFIK 315 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTV 258 +ILGF + +I ++NT F + N P + Sbjct: 316 KEAFNTILGFLAQNTTKIIFISSTNTTSDATCFLTRLNNAPFDMLNVVSYVCEEH 370 >gi|94694819|gb|ABF47056.1| DNA cleavage and packaging protein large subunit [Human herpesvirus 5] gi|94694829|gb|ABF47061.1| DNA cleavage and packaging protein large subunit [Human herpesvirus 5] Length = 674 Score = 53.4 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 18/175 (10%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GKT ++ +L+ G+SI +A+ + + + EV RH F Sbjct: 213 PRRHGKTWFIIPIISFLLKHMIGISIGYVAHQKH-VSQFVLKEVE-----FRCRHTFA-- 264 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + E + + ID + T S ++ + + DEA Sbjct: 265 ------RDYVVENKDNVISIDHRGAKSTALFASCYNTNS---IRGQNFHLLLVDEAHFIK 315 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTV 258 +ILGF + +I ++NT F + N P + Sbjct: 316 KEAFNTILGFLAQNTTKIIFISSTNTTSDATCFLTRLNNAPFDMLNVVSYVCEEH 370 >gi|94694807|gb|ABF47050.1| DNA cleavage and packaging protein large subunit [Human herpesvirus 5] gi|94694809|gb|ABF47051.1| DNA cleavage and packaging protein large subunit [Human herpesvirus 5] gi|94694823|gb|ABF47058.1| DNA cleavage and packaging protein large subunit [Human herpesvirus 5] gi|94694839|gb|ABF47066.1| DNA cleavage and packaging protein large subunit [Human herpesvirus 5] gi|242345696|gb|ACS92014.1| DNA packaging terminase subunit 1 [Human herpesvirus 5] gi|256557083|gb|ACU83739.1| DNA packaging terminase subunit 1 [Human herpesvirus 5] Length = 674 Score = 53.4 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 18/175 (10%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GKT ++ +L+ G+SI +A+ + + + EV RH F Sbjct: 213 PRRHGKTWFIIPIISFLLKHMIGISIGYVAHQKH-VSQFVLKEVE-----FRCRHTFA-- 264 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + E + + ID + T S ++ + + DEA Sbjct: 265 ------RDYVVENKDNVISIDHRGAKSTALFASCYNTNS---IRGQNFHLLLVDEAHFIK 315 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTV 258 +ILGF + +I ++NT F + N P + Sbjct: 316 KEAFNTILGFLAQNTTKIIFISSTNTTSDATCFLTRLNNAPFDMLNVVSYVCEEH 370 >gi|94694817|gb|ABF47055.1| DNA cleavage and packaging protein large subunit [Human herpesvirus 5] Length = 674 Score = 53.4 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 18/175 (10%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GKT ++ +L+ G+SI +A+ + + + EV RH F Sbjct: 213 PRRHGKTWFIIPIISFLLKHMIGISIGYVAHQKH-VSQFVLKEVE-----FRCRHTFA-- 264 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + E + + ID + T S ++ + + DEA Sbjct: 265 ------RDYVVENKDNVISIDHRGAKSTALFASCYNTNS---IRGQNFHLLLVDEAHFIK 315 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTV 258 +ILGF + +I ++NT F + N P + Sbjct: 316 KEAFNTILGFLAQNTTKIIFISSTNTTSDATCFLTRLNNAPFDMLNVVSYVCEEH 370 >gi|94694827|gb|ABF47060.1| DNA cleavage and packaging protein large subunit [Human herpesvirus 5] Length = 674 Score = 53.4 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 18/175 (10%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GKT ++ +L+ G+SI +A+ + + + EV RH F Sbjct: 213 PRRHGKTWFIIPIISFLLKHMIGISIGYVAHQKH-VSQFVLKEVE-----FRCRHTFA-- 264 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + E + + ID + T S ++ + + DEA Sbjct: 265 ------RDYVVENKDNVISIDHRGAKSTALFASCYNTNS---IRGQNFHLLLVDEAHFIK 315 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTV 258 +ILGF + +I ++NT F + N P + Sbjct: 316 KEAFNTILGFLAQNTTKIIFISSTNTTSDATCFLTRLNNAPFDMLNVVSYVCEEH 370 >gi|94694841|gb|ABF47067.1| DNA cleavage and packaging protein large subunit [Human herpesvirus 5] Length = 674 Score = 53.4 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 18/175 (10%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GKT ++ +L+ G+SI +A+ + + + EV RH F Sbjct: 213 PRRHGKTWFIIPIISFLLKHMIGISIGYVAHQKH-VSQFVLKEVE-----FRCRHTFA-- 264 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + E + + ID + T S ++ + + DEA Sbjct: 265 ------RDYVVENKDNVISIDHRGAKSTALFASCYNTNS---IRGQNFHLLLVDEAHFIK 315 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTV 258 +ILGF + +I ++NT F + N P + Sbjct: 316 KEAFNTILGFLAQNTTKIIFISSTNTTSDATCFLTRLNNAPFDMLNVVSYVCEEH 370 >gi|94694813|gb|ABF47053.1| DNA cleavage and packaging protein large subunit [Human herpesvirus 5] gi|254770949|gb|ACT81760.1| DNA packaging terminase subunit 1 [Human herpesvirus 5] Length = 674 Score = 53.4 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 18/175 (10%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GKT ++ +L+ G+SI +A+ + + + EV RH F Sbjct: 213 PRRHGKTWFIIPIISFLLKHMIGISIGYVAHQKH-VSQFVLKEVE-----FRCRHTFA-- 264 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + E + + ID + T S ++ + + DEA Sbjct: 265 ------RDYVVENKDNVISIDHRGAKSTALFASCYNTNS---IRGQNFHLLLVDEAHFIK 315 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTV 258 +ILGF + +I ++NT F + N P + Sbjct: 316 KEAFNTILGFLAQNTTKIIFISSTNTTSDATCFLTRLNNAPFDMLNVVSYVCEEH 370 >gi|94694843|gb|ABF47068.1| DNA cleavage and packaging protein large subunit [Human herpesvirus 5] Length = 674 Score = 53.4 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 18/175 (10%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GKT ++ +L+ G+SI +A+ + + + EV RH F Sbjct: 213 PRRHGKTWFIIPIISFLLKHMIGISIGYVAHQKH-VSQFVLKEVE-----FRCRHTFA-- 264 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + E + + ID + T S ++ + + DEA Sbjct: 265 ------RDYVVENKDNVISIDHRGAKSTALFASCYNTNS---IRGQNFHLLLVDEAHFIK 315 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTV 258 +ILGF + +I ++NT F + N P + Sbjct: 316 KEAFNTILGFLAQNTTKIIFISSTNTTSDATCFLTRLNNAPFDMLNVVSYVCEEH 370 >gi|46949065|gb|AAT07420.1| UL89 DNA packaging protein [Macacine herpesvirus 3] Length = 671 Score = 53.4 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 58/175 (33%), Gaps = 18/175 (10%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GKT ++ +L+ G+SI +A+ + + + EV RH F Sbjct: 211 PRRHGKTWFIIPIICFLLKHMIGISIGYVAHQKH-VSQFVLKEVE-----FRCRHTFA-- 262 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + E + + ID K T S ++ + + DEA Sbjct: 263 ------KDYVVENKDFVISIDHKGAKSTALFASCYNTNS---IRGQNFHLLLVDEAHFIK 313 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTV 258 + +ILGF + +I ++NT F + N P + Sbjct: 314 EKAFNTILGFLAQNTTKIIFISSTNTTSDATCFLTRLNNAPFDMLNVVSYVCEEH 368 >gi|52139262|ref|YP_081537.1| DNA packaging terminase subunit 1 [Human herpesvirus 5] gi|39842097|gb|AAR31641.1| DNA packaging terminase subunit 1 [Human herpesvirus 5] gi|44903295|gb|AAS48974.1| UL89 [Human herpesvirus 5] gi|94694805|gb|ABF47049.1| DNA cleavage and packaging protein large subunit [Human herpesvirus 5] gi|94694811|gb|ABF47052.1| DNA cleavage and packaging protein large subunit [Human herpesvirus 5] gi|94694845|gb|ABF47069.1| DNA cleavage and packaging protein large subunit [Human herpesvirus 5] gi|94694849|gb|ABF47071.1| DNA cleavage and packaging protein large subunit [Human herpesvirus 5] gi|94694851|gb|ABF47072.1| DNA cleavage and packaging protein large subunit [Human herpesvirus 5] gi|94694855|gb|ABF47074.1| DNA cleavage and packaging protein large subunit [Human herpesvirus 5] gi|157780097|gb|ABV71611.1| UL89 [Human herpesvirus 5] gi|242345862|gb|ACS92179.1| DNA packaging terminase subunit 1 [Human herpesvirus 5] gi|242554146|gb|ACS93421.1| DNA packaging terminase subunit 1 [Human herpesvirus 5] gi|254771115|gb|ACT81925.1| DNA packaging terminase subunit 1 [Human herpesvirus 5] gi|270311455|gb|ACZ72832.1| DNA packaging terminase subunit 1 [Human herpesvirus 5] gi|270355676|gb|ACZ79836.1| DNA packaging terminase subunit 1 [Human herpesvirus 5] gi|270355841|gb|ACZ80000.1| DNA packaging terminase subunit 1 [Human herpesvirus 5] gi|270356007|gb|ACZ80165.1| DNA packaging terminase subunit 1 [Human herpesvirus 5] gi|270356173|gb|ACZ80330.1| DNA packaging terminase subunit 1 [Human herpesvirus 5] gi|290564434|gb|ADD39135.1| DNA packaging terminase subunit 1 [Human herpesvirus 5] gi|294488421|gb|ADE88081.1| DNA packaging terminase subunit 1 [Human herpesvirus 5] gi|317160580|gb|ADV04406.1| DNA packaging terminase subunit 1 [Human herpesvirus 5] Length = 674 Score = 53.4 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 18/175 (10%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GKT ++ +L+ G+SI +A+ + + + EV RH F Sbjct: 213 PRRHGKTWFIIPIISFLLKHMIGISIGYVAHQKH-VSQFVLKEVE-----FRCRHTFA-- 264 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + E + + ID + T S ++ + + DEA Sbjct: 265 ------RDYVVENKDNVISIDHRGAKSTALFASCYNTNS---IRGQNFHLLLVDEAHFIK 315 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTV 258 +ILGF + +I ++NT F + N P + Sbjct: 316 KEAFNTILGFLAQNTTKIIFISSTNTTSDATCFLTRLNNAPFDMLNVVSYVCEEH 370 >gi|256845626|ref|ZP_05551084.1| predicted protein [Fusobacterium sp. 3_1_36A2] gi|256719185|gb|EEU32740.1| predicted protein [Fusobacterium sp. 3_1_36A2] Length = 463 Score = 53.4 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 31/279 (11%), Positives = 73/279 (26%), Gaps = 30/279 (10%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR-HWFEM 143 R +GK L ++ + + + Q K + S + ++ Sbjct: 52 CRRMGKDLLALYLACKRCIDVSNSVVYYVFPTMKQGKMMILDGYSNNKKKIIDEIIDRKV 111 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 L L Y SK Y + + + + E + Sbjct: 112 LDLPLKSDKLYHSDNTIRFKNGSKIYFVGSQ--------DANNKVGGNLDLLVISEMALI 163 Query: 204 -PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262 + I ++ + + +T R F + + W ++ + +D Sbjct: 164 QNEDIMMYLIPSVVNIKGKIILV---STPRFGSEFNKMIEEKPQKWFIDILNALDIRAVD 220 Query: 263 SG----FHEGIISRYG--LDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA 316 + + + + +IL N + ++ ++ Sbjct: 221 ENGERVYTDEKLENVKTLMSESKFEQDILCNIDVANENAIYAASLLKAEWIKDLNITNKK 280 Query: 317 PLI---MGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352 + +G D T +VF N I I ++ Sbjct: 281 LYVSEDLGI------NDSTALVFTVDNTI--IHHYANTD 311 >gi|58039664|ref|YP_191628.1| Phage DNA packaging protein [Gluconobacter oxydans 621H] gi|58002078|gb|AAW60972.1| Phage DNA Packaging Protein [Gluconobacter oxydans 621H] Length = 437 Score = 53.4 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 35/285 (12%), Positives = 73/285 (25%), Gaps = 31/285 (10%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 ++ V + G GKT + ++ P + T L Sbjct: 6 RLNDSQREAVRLLGGPARHILLRGGSRSGKTFVLVRAVVIRALKAPDSRHGIFRHRLTAL 65 Query: 121 KNTLWAEVS-KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 K ++ + K + M GW + + + + E+ Sbjct: 66 KASVLRDTFPKVMRMC------------FPQVGWKLDRQDCVVTFPNGSTIFFGGLDDEQ 113 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT-SNTRRLNGWFY 238 R + V+ +EAS +L + +N + W Y Sbjct: 114 RTEK---ILGLEFATVYLNEASQISYGARNMLLTRLAQKTGLAVKEYIDANPPSMGHWLY 170 Query: 239 DIFNIP---------LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 +F + + D+ + + S L R + G++ Sbjct: 171 ALFESGIEPKSGEPLADRSLYATMILNPQANRDNLSEDYLASLEALPEREKRRFLYGEYQ 230 Query: 290 QQEVNNFIPHNYIEE-----AMSREAIDDLYAPLIMGCDIAGEGG 329 + A SR + +++ D +G G Sbjct: 231 SVVEGALWRLELFQREAAITAQSRADVAARMRRILVSVDPSGAAG 275 >gi|327197990|ref|YP_004306307.1| putative terminase ATPase subunit [Lactococcus phage 949] gi|306009310|gb|ADM73705.1| putative terminase ATPase subunit [Lactococcus phage 949] Length = 565 Score = 53.4 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 28/290 (9%), Positives = 67/290 (23%), Gaps = 41/290 (14%) Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 + + I A RGI KT + P ++ ++ Q + + Sbjct: 49 QRVYMRTFFRYKRVGIVASRGISKTYIELLSNYVKCILYPNNALAVAMPTKEQSAKVVKS 108 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 + ++ P + + + + + +D+ + R + Sbjct: 109 KFEEFWRDYPLLKNELIFNKCKFEKDYVKLVFKNGSTLDTLTVGESSRGLRAQGITLEE- 167 Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW------------IMTSNTRRLN 234 DE IN+ I + + Sbjct: 168 ---------IVDE-RMDAKTINEVIRPMLAQARNVVGHGVDKENEYSKTEAYVTTASHKQ 217 Query: 235 GWFYDIF-----NIPLEDWKRYQIDTRTV----EGIDSGFHEGIISRYGLDSDVARIEIL 285 + YD F + + + +D + E Sbjct: 218 SYCYDKFKALYEEMEQGKPTIVLGTSYEMGTHFGTLDIDDVNEKLEDPTYSPLSFEREFR 277 Query: 286 GQFPQQEVNNFIPHNYIEEA---------MSREAIDDLYAPLIMGCDIAG 326 F + + I +A ++ E + ++ D+A Sbjct: 278 SVFTGSSEKSLVSAEEISKARVLEKPMWKINSEDKKNPNVRFVLSYDVAR 327 >gi|229142759|ref|ZP_04271217.1| Prophage LambdaBa02, terminase, large subunit [Bacillus cereus BDRD-ST26] gi|228640704|gb|EEK97077.1| Prophage LambdaBa02, terminase, large subunit [Bacillus cereus BDRD-ST26] Length = 524 Score = 53.4 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 35/323 (10%), Positives = 82/323 (25%), Gaps = 38/323 (11%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ + ++ H + I GR GKTT+ + + + ++ PG Sbjct: 42 QPWQHFVIGSMYGWIHKDTGYRRFREGLIFI--GRKNGKTTMISGLSNYAVAKDNEPGAR 99 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK-- 167 + +AN++ Q L+ E + P ++ +E K Sbjct: 100 VYVLANTKQQAGE-LFDESRAMVQKSPFLRKHLRENQKGIFHDKTHSKIEPRASDSKKLD 158 Query: 168 ---------HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218 + + M V+ A + T++ Sbjct: 159 GLNTHLGIFDEIHEFKNFKLINVIKKSRGARKQPMIVYITTAGYQLEGPLVQYYEIATDV 218 Query: 219 NPNRF--------WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGII 270 + + I P + + + ++ Sbjct: 219 LERVIDQDRKFYFMAEMDSVDEIENPELWIKANPN------MGVSLDLPSLIDDWNTDKH 272 Query: 271 SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLIMGCDIAGEGG 329 + + + + F + +F+ ++ + + + G D++ Sbjct: 273 TEAEKNDWITKQF--NIFVDNDEMSFVGIEILKRNEEVIDIKELAGKECVAGYDLSST-E 329 Query: 330 DKTVVV----FRRGNIIEHIFDW 348 D T GN+ W Sbjct: 330 DFTSACLEFPLNDGNVFVLSHSW 352 >gi|281356810|ref|ZP_06243301.1| protein of unknown function DUF264 [Victivallis vadensis ATCC BAA-548] gi|281316937|gb|EFB00960.1| protein of unknown function DUF264 [Victivallis vadensis ATCC BAA-548] Length = 417 Score = 53.4 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 38/295 (12%), Positives = 80/295 (27%), Gaps = 35/295 (11%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 + S P+ F + G GKT + + +L G + Sbjct: 2 KRAFVKTAAQQRAIRLLSGPSRF-VMLYGGSRSGKTFILVYAILVRALRAAGSRHAILRL 60 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 ++ ++ + ++ L+ G ++Q + + + Sbjct: 61 HANTVRQSIRFDT-----------LPKVVKLAFPGLGLSESKVDQLIRLPNGSELWFGGL 109 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT-SNTRRLN 234 +EER D ++ +E S + L + + N + Sbjct: 110 DTEERADK---ILGKEFATIYFNECSELGFEAVSTALTRLAQRTALKNRAWFDCNPAGKS 166 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTV------------EGIDSGFHEGIISRYGLDSDVARI 282 W Y +F + + E + G+ E ++ + Sbjct: 167 HWSYRLFIERRDPVSGLPLSFPDNYASMLLNPAENRENLPEGYLEETLAGLTERQRLRFQ 226 Query: 283 EILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG---DKTVV 334 E G + IE SR +++G D A G D+T + Sbjct: 227 E--GAWLDDLSGALWSTAMIER--SRVEAAPSLERIVIGVDPAVTSGKDSDETGI 277 >gi|213159228|ref|YP_002321273.1| gp89 [Caviid herpesvirus 2] gi|212598233|gb|ACJ35861.1| GP89 [Caviid herpesvirus 2] gi|324039526|dbj|BAJ78548.1| GP89 [Caviid herpesvirus 2] Length = 670 Score = 53.4 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 41/298 (13%), Positives = 79/298 (26%), Gaps = 51/298 (17%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GKT ++ +L+ G+SI +A+ + + L + M H E + Sbjct: 211 PRRHGKTWFMIPIICFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFSSTHTIENK 270 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + + T + + DEA Sbjct: 271 DNVISI-----------------DHHVAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK 313 Query: 205 DIINKSILGFFTELNPNRFWIMTSNT-RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 +ILGF + +I ++NT + + N P + S Sbjct: 314 KDAFNTILGFLAQHTTKIVFISSTNTATSATCFLTRLSNSPFDMLNVISYVCEEHMRAFS 373 Query: 264 GFHEGI------------ISRYGLDSDVARIEILGQFPQ---------QEVNNFIPHN-- 300 + I+ A + + G F E I + Sbjct: 374 EKGDATACPCYRLHKPTFITISSEVRRTANMFLAGSFMDEIMGGTNKISEETVLITDDGR 433 Query: 301 -----YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353 + ++R+ L L + D A G I + + +L+ Sbjct: 434 EEFEMFRYSTINRKIRQSLGDTLYVYLDPAFTSN-----RRASGTGIAAVGTYKNQLV 486 >gi|170764163|ref|ZP_02633320.2| phage terminase, large subunit, pbsx family [Clostridium perfringens E str. JGS1987] gi|170661287|gb|EDT13970.1| phage terminase, large subunit, pbsx family [Clostridium perfringens E str. JGS1987] Length = 441 Score = 53.4 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 71/267 (26%), Gaps = 25/267 (9%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 ++ A A R GKT N + + + ++ K + + Sbjct: 25 NMYNIAEGAVR-AGKTVDNVFAFAHELKNTKDKLHLATGSTSANAKLNIGD-----ANGF 78 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 + F QS G ++ + I T +++ Sbjct: 79 GLEYIFRGQSHWGKYKGNECLYIKGPSTNNKLRIVIFAGTA---LANSYKKIRGNSYGMW 135 Query: 196 FNDEAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP---------- 244 E + PD I ++ FW + N N + Y + Sbjct: 136 IATEINLHHPDSIKEAFNRTIAAHKRKVFWDL--NPDNPNAFIYKDYIDNYKSKYENGEL 193 Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE 304 + Y I E I S+Y +S + +ILG+ Sbjct: 194 KGGYNYYHFTIDDNINISDERKEEIKSQYDKNSIWYQRDILGKRC-VAEGLIYRRFANNP 252 Query: 305 AMSREAIDDLYA--PLIMGCDIAGEGG 329 R D+ +++G D G G Sbjct: 253 NSYRAEESDVSNLMKIVIGVDFGGTGS 279 >gi|297618941|ref|YP_003707046.1| hypothetical protein Mvol_0413 [Methanococcus voltae A3] gi|297377918|gb|ADI36073.1| hypothetical protein Mvol_0413 [Methanococcus voltae A3] Length = 576 Score = 53.4 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 37/274 (13%), Positives = 80/274 (29%), Gaps = 53/274 (19%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA-----WMMLWLISTRPGMS 109 Q E ++ + + + + G+G GK + + ++ +++ P Sbjct: 93 QAEILKKMKKN------------YLSTVLVGKGGGKDFMTSLLFNDELIDLILTDIPYTR 140 Query: 110 I--ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 + I IA + N + E +W S F+ S ++ + I Sbjct: 141 VDFINIAPNADLAHNVFFREFKQWFSRCKLWKLFKNSEKS------PIKINNTFIKIGDL 194 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG----------FFTE 217 + + S T+ + DE D + Sbjct: 195 VKITSGHSRSA-------SFEGTNPKCIVIDE---ISDENFMNAEKIFYQAKSSVQTRWG 244 Query: 218 LNPNRFWIMTS-----NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISR 272 + I + N G+ N+ ++D ++ T V S F Sbjct: 245 KDGKVILISWTRFPTPNPLDDIGYKIYSENLGIDDVFSFKGATWEVNSHRSKFDFE--DD 302 Query: 273 YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306 Y + +A+ + P+ N FI + ++ Sbjct: 303 YKRNGVLAKKMYECKPPELS-NYFINADKLKNCQ 335 >gi|330958838|gb|EGH59098.1| hypothetical protein PMA4326_09820 [Pseudomonas syringae pv. maculicola str. ES4326] Length = 512 Score = 53.0 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 50/349 (14%), Positives = 98/349 (28%), Gaps = 65/349 (18%) Query: 51 PHRW---QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107 P W Q E + ++ S + + GR G +T A S G Sbjct: 33 PFVWNDAQRELHKRLEEQL------SLTGWVRAIVLKGRQQGISTYVAARFYKRTSMNFG 86 Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM-GIDS 166 + + + TL+ + +FE+ +L P+ E S + S Sbjct: 87 KRTMILTH-LDAATQTLFGM---------AKTFFELSDDTLRPTTKANSGTELSFAKLRS 136 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL-NPNRFWI 225 + T + R DT H E + + T + I Sbjct: 137 GYKVATAGSPGAGRSDTIQFLHA--------SEMAFWANAQKIMAGLGQTVPLIDDSEAI 188 Query: 226 MTSNTRRLNGWFYDIFNIP---LEDWKRYQIDTRTVEG----------IDSGFHEGIISR 272 + S + F+ + + D+ I G + +E + + Sbjct: 189 IESTANGMGNLFHQFWQLAVAGKSDYMAVFIPWFVESGYRRAVPKDFELSEEDYEYMEAY 248 Query: 273 YGLDSDVARI--EILGQF--------------PQQEVNNFIPHNYIEE---AMSREAIDD 313 + +A +I F P I+ +++R+ Sbjct: 249 GLDEEQMAWRAGKISSDFANDVDFFNQEYPATPDLAFQKVGHKPLIKTVKVSLARKKEIK 308 Query: 314 LYAPL---IMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359 + ++G D A GGD + + R+G + I + + Sbjct: 309 HERRIGAHVVGLDPAR-GGDTSTFIHRQGRVAWGIERNNIPDTMAVVGQ 356 >gi|14251127|ref|NP_116494.1| putative large terminase subunit [Lactococcus phage BK5-T] gi|14209619|gb|AAK56802.1|AF176025_2 putative large terminase subunit [Lactococcus phage BK5-T] gi|26005523|emb|CAC80143.1| hypothetical protein [Lactococcus phage BK5-T] Length = 657 Score = 53.0 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 46/332 (13%), Positives = 105/332 (31%), Gaps = 47/332 (14%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 ++ WQ +F+ + + ++ T+ ++S RG GKT + A +M++ Sbjct: 106 PNVDTGEPTELMPWQ-KFIMCMLIGWRNSEGGKRFTVAIISVS--RGQGKTYILAILMVY 162 Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 + ++N + + + + + SK + ++ L ++ Sbjct: 163 SFLFE----SLGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDR 218 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTEL 218 S+ D + + H DE + I+K + G Sbjct: 219 SILNDEVVMKKMNNKIRAISHEAGQYD-SFHFTTAIFDEIGEVTNREKISKIVSGQVLVK 277 Query: 219 NPNRFWIMTSNTRRLNGWFYDI----FNIPLEDWKRYQIDT------------------- 255 N I TS + F +DW R + Sbjct: 278 NHQFVQISTSYPD-PSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETW 336 Query: 256 -RTVEGIDSGFHEGIISRYGLDSD----------VARIEILGQFPQQEVNNFIPHNYIEE 304 ++ ++ + I+ + +D + + L + QQ+V++++ +E+ Sbjct: 337 VKSNPLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVEK 396 Query: 305 AMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 A+ E +G D + D T + F Sbjct: 397 AIIPEFSIH-GQRCYIGIDYSMM-SDNTAIAF 426 >gi|94694831|gb|ABF47062.1| DNA cleavage and packaging protein large subunit [Human herpesvirus 5] Length = 674 Score = 53.0 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 57/175 (32%), Gaps = 18/175 (10%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GKT ++ +L+ G+SI +A+ + + L A P RH F Sbjct: 213 PRRRGKTWFIIPIISFLLKHMIGISIGYVAHHKHVSQFVLTAV------EFPCRHTFA-- 264 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + E + + ID + T S ++ + + DEA Sbjct: 265 ------RDYVVENKDNVISIDHRGAKSTALFASCYDTNS---IRGQNFHLLLVDEAHFIK 315 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTV 258 +ILGF + +I ++NT F + N P + Sbjct: 316 KEAFNTILGFLAQNTTKIIFISSTNTTSDATCFLTRLNNAPFDMLNVVSYVCEEH 370 >gi|13095784|ref|NP_076675.1| terminase [Lactococcus phage bIL286] gi|12830973|gb|AAK08328.1|AF323669_41 terminase [Lactococcus phage bIL286] Length = 660 Score = 53.0 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 46/332 (13%), Positives = 105/332 (31%), Gaps = 47/332 (14%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 ++ WQ +F+ + + ++ T+ ++S RG GKT + A +M++ Sbjct: 109 PNVDTGEPTELMPWQ-KFIMCMLIGWRNSEGGKRFTVAIISVS--RGQGKTYILAILMVY 165 Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 + ++N + + + + + SK + ++ L ++ Sbjct: 166 SFLFE----SLGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDR 221 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTEL 218 S+ D + + H DE + I+K + G Sbjct: 222 SILNDEVVMKKMNNKIRAISHEAGQYD-SFHFTTAIFDEIGEVTNREKISKIVSGQVMVE 280 Query: 219 NPNRFWIMTSNTRRLNGWFYDI----FNIPLEDWKRYQIDT------------------- 255 N I TS + F +DW R + Sbjct: 281 NHQFVQISTSYPD-PSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETW 339 Query: 256 -RTVEGIDSGFHEGIISRYGLDSD----------VARIEILGQFPQQEVNNFIPHNYIEE 304 ++ ++ + I+ + +D + + L + QQ+V++++ +E+ Sbjct: 340 VKSNPLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVEK 399 Query: 305 AMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 A+ E +G D + D T + F Sbjct: 400 AIIPEFSIH-GQRCYIGIDYSMM-SDNTAIAF 429 >gi|15673381|ref|NP_267555.1| terminase large subunit [Lactococcus lactis subsp. lactis Il1403] gi|12724386|gb|AAK05497.1|AE006371_11 prophage pi3 protein 26, terminase large subunit [Lactococcus lactis subsp. lactis Il1403] Length = 657 Score = 53.0 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 46/332 (13%), Positives = 105/332 (31%), Gaps = 47/332 (14%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 ++ WQ +F+ + + ++ T+ ++S RG GKT + A +M++ Sbjct: 106 PNVDTGEPTELMPWQ-KFIMCMLIGWRNSEGGKRFTVAIISVS--RGQGKTYILAILMVY 162 Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 + ++N + + + + + SK + ++ L ++ Sbjct: 163 SFLFE----SLGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDR 218 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTEL 218 S+ D + + H DE + I+K + G Sbjct: 219 SILNDEVVMKKMNNKIRAISHEAGQYD-SFHFTTAIFDEIGEVTNREKISKIVSGQVMVE 277 Query: 219 NPNRFWIMTSNTRRLNGWFYDI----FNIPLEDWKRYQIDT------------------- 255 N I TS + F +DW R + Sbjct: 278 NHQFVQISTSYPD-PSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETW 336 Query: 256 -RTVEGIDSGFHEGIISRYGLDSD----------VARIEILGQFPQQEVNNFIPHNYIEE 304 ++ ++ + I+ + +D + + L + QQ+V++++ +E+ Sbjct: 337 VKSNPLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVEK 396 Query: 305 AMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 A+ E +G D + D T + F Sbjct: 397 AIIPEFSIH-GQRCYIGIDYSMM-SDNTAIAF 426 >gi|229590327|ref|YP_002872446.1| putative phage terminase large subunit [Pseudomonas fluorescens SBW25] gi|229362193|emb|CAY49095.1| putative phage terminase large subunit [Pseudomonas fluorescens SBW25] Length = 496 Score = 53.0 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 46/346 (13%), Positives = 88/346 (25%), Gaps = 79/346 (22%) Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 ++ + I R +G TTL + L + IA++ K Sbjct: 36 QEQIDYFQGMHTRNIILKARQLGFTTLVCIVQL-DAALFEAAKCALIAHTLNDAKRLFRE 94 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 +V LP L + + ++ T Sbjct: 95 KVKYAYDNLPK---------ELRAANPARSDAAGELVFSKGGSLYVSTSFRG---GTLRY 142 Query: 187 PHNTHGMAVFNDEASGT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242 H E P + + G F + F + S G+F+D Sbjct: 143 LH--------VSEFGKICAKFPHKAREIVTGAFEAVAAECFVTIESTAEGRAGYFFDYSQ 194 Query: 243 IPLE-----------DWKRYQIDTRTV------------EGIDSGFHEGIISRYGLDSD- 278 DWK + + + + ++ G+D++ Sbjct: 195 SAERQQLAGVPLGLLDWKFFFFSWWNNKAYWLDPTDVVIPQRLTDYFNELFAKQGIDTNP 254 Query: 279 ------VARIEILGQ-------------FPQQEVNNFIPHNYIE---EAMSREAIDDLYA 316 A+ + LG F Q + + + D+ + Sbjct: 255 GQRAWYAAKEKTLGDDMKREYPSLPAEAFQQSIEGAYYAKQFTKLYGAQRIGALPDNSHL 314 Query: 317 PLIMGCDIAGEGGDKTVVVFRRGNIIEHIF-DWSAKLIQETNQEGC 361 P+ DI GD T + F + + ++ E + EG Sbjct: 315 PVHTIWDIGV--GDSTAIWF-----VRIVGEEYHVIDFYENSGEGL 353 >gi|189187385|gb|ACD84552.1| terminase [Cyprinid herpesvirus 1] Length = 783 Score = 53.0 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 49/153 (32%), Gaps = 9/153 (5%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GKTT+ + +L + + G+ I+ A + NT+ V +++ + WF Sbjct: 229 PRRCGKTTIVSI-VLGAMLSFMGIDIMVQAQNLNMA-NTIQKTVQDFMNHYKSKSWF--- 283 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 +++ +T + + + DEA+ Sbjct: 284 --PEKFKYKEVTGTCKNLVYHFNPGAKDKKTTAHYLASSGNSARGQNPDICVVDEAAFVG 341 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 + S+L T + S+ + W Sbjct: 342 ANLLVSVLPLMTVKGTKQIH--ISSPGSADSWI 372 >gi|257063552|ref|YP_003143224.1| phage terminase-like protein, large subunit [Slackia heliotrinireducens DSM 20476] gi|256791205|gb|ACV21875.1| phage terminase-like protein, large subunit [Slackia heliotrinireducens DSM 20476] Length = 546 Score = 53.0 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 41/299 (13%), Positives = 81/299 (27%), Gaps = 36/299 (12%) Query: 28 FKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRG 87 F+ R F KG+ + WQ F+ A+ + IS R Sbjct: 53 PIEFMRR-FCRHSKGEWAGKPLELELWQKAFVCALFGFVDKDTGERRFNEALLCIS--RK 109 Query: 88 IGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 GK+TL A ++L+L++ PG + +A Q K ++ E + + P Sbjct: 110 GGKSTLAAGILLYLLTADGEPGAEVYTVATKLDQAK-LIFDEAAHMVEQSPT-------- 160 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 L+ +L + T V DE G D Sbjct: 161 LAKRIKKRRTDLYFAGQMSKMQPLGKNSNTLDGLNASA-----------VCIDELHGITD 209 Query: 206 -IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264 + + + + + T+ F D++ K + Sbjct: 210 RNLYEVMKQSMSTRRQPLLLMTTTAGFVRECIFDDMYEYAE---KVLNGVIEDERFLAVV 266 Query: 265 FHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323 + + + + + + + + + R I+ D Sbjct: 267 YELDTVEEWKDEKAWYKA-------NPSLGTVKKLDDLRAKVERAKNSPNDLNGILCKD 318 >gi|325842543|ref|ZP_08167714.1| helicase C-terminal domain protein [Turicibacter sp. HGF1] gi|325489587|gb|EGC91951.1| helicase C-terminal domain protein [Turicibacter sp. HGF1] Length = 624 Score = 53.0 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 49/179 (27%), Gaps = 10/179 (5%) Query: 60 EAVDVHCHSNVNN----SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 + H ++ + F+ + G GKT +W +L G ++ IA+ Sbjct: 16 RELYEHQLEAISCLDEMDEQSSFRTLVVIPTGGGKTLTASWWLLKKAL-NEGKKVLWIAH 74 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 + L+ L + W S + + Q D Sbjct: 75 RQMLLEQALMTFKQNAYATCMPTRW----SFDYRIVSGIHDKVSQIKKEDDLLIISKDSL 130 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 S + + V DEA P ++IL + + + T Sbjct: 131 VSRLNGLKPW-LKDQKEVYVVIDEAHHAPAKSYQTILNYIDSQVEQVKLLGLTATPFRT 188 >gi|293375270|ref|ZP_06621552.1| DEAD/DEAH box helicase [Turicibacter sanguinis PC909] gi|292646026|gb|EFF64054.1| DEAD/DEAH box helicase [Turicibacter sanguinis PC909] Length = 624 Score = 53.0 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 49/179 (27%), Gaps = 10/179 (5%) Query: 60 EAVDVHCHSNVNN----SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 + H ++ + F+ + G GKT +W +L G ++ IA+ Sbjct: 16 RELYEHQLEAISCLDEMDEQSSFRTLVVIPTGGGKTLTASWWLLKKAL-NEGKKVLWIAH 74 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 + L+ L + W S + + Q D Sbjct: 75 RQMLLEQALMTFKQNAYATCMPTRW----SFDYRIVSGIHDKVSQIKKEDDLLIISKDSL 130 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 S + + V DEA P ++IL + + + T Sbjct: 131 VSRLNGLKPW-LKDQKEVYVVIDEAHHAPAKSYQTILNYIDSQVEQVKLLGLTATPFRT 188 >gi|153955889|ref|YP_001396654.1| hypothetical protein CKL_3280 [Clostridium kluyveri DSM 555] gi|219856242|ref|YP_002473364.1| hypothetical protein CKR_2899 [Clostridium kluyveri NBRC 12016] gi|146348747|gb|EDK35283.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555] gi|219569966|dbj|BAH07950.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 450 Score = 53.0 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 24/227 (10%), Positives = 67/227 (29%), Gaps = 38/227 (16%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + G G K+ A ++ + + + + ++++ ++ + + + + Sbjct: 25 LVGGYGSSKSYHVALKLILKLLQ-EKRTALVVREVFDTIRDSCYSLLEEIVIDMGLDTRI 83 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + + + + + I ++P + V+ +E S Sbjct: 84 KFTASPM------------QVRFPNGSKIIFKGM---DKPSKLKSI--NNVSIVWIEECS 126 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-------------------- 241 K +LG + + I+++N + W Y F Sbjct: 127 EVKYEGFKELLGRLRHPSLSLHMILSTNPVSKDNWTYKHFFKNEKKKTFILDDEELYKKR 186 Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 + + + + + E + D D+ RI G+F Sbjct: 187 IVVRNNTYYHHSLADDNLFLPKSYIEQLEELKTYDIDLYRIARKGRF 233 >gi|30263956|ref|NP_846333.1| prophage LambdaBa02, terminase, large subunit, putative [Bacillus anthracis str. Ames] gi|47778245|ref|YP_020739.2| prophage LambdaBa02, terminase, large subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|30258600|gb|AAP27819.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus anthracis str. Ames] gi|47551950|gb|AAT33214.2| putative prophage LambdaBa02, terminase, large subunit [Bacillus anthracis str. 'Ames Ancestor'] Length = 562 Score = 53.0 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 36/323 (11%), Positives = 82/323 (25%), Gaps = 38/323 (11%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ + ++ H + I GR GKTT+ + + + ++ PG Sbjct: 80 QPWQHFVIGSLYGWIHKDTGYRRFREGLIFI--GRKNGKTTMISGLSNYAVAKDNEPGAR 137 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK-- 167 + +AN++ Q L+ E + P ++ +E K Sbjct: 138 VYVLANTKQQAGE-LFDESRAMVQKSPLLRKHLRENQKGIFHDKTHSKIEPRASDSKKLD 196 Query: 168 ---------HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--------KS 210 + + M V+ A + Sbjct: 197 GLNTHLGIFDEIHEFKNFKLINVIKKSRGARKQPMIVYITTAGYQLEGPLVQYYEIATDV 256 Query: 211 ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGII 270 + G + F + + I P + + + ++ Sbjct: 257 LEGVIDQDRKFYFMAEMDSVDEIENPELWIKANPN------MGVSLDLPSLIDDWNTDKH 310 Query: 271 SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLIMGCDIAGEGG 329 + + + + F + +F+ ++ + + G D++ Sbjct: 311 TDAEKNDWITKQF--NIFVDNDEMSFVGIEILKRNEEVIDIKGLAGKECVAGYDLSAT-E 367 Query: 330 DKTVVV----FRRGNIIEHIFDW 348 D T GN+ W Sbjct: 368 DFTSACLEFPLDDGNVFVLSHSW 390 >gi|29832064|ref|NP_826698.1| phage-related terminase large subunit [Streptomyces avermitilis MA-4680] gi|29609182|dbj|BAC73233.1| putative phage-related terminase large subunit [Streptomyces avermitilis MA-4680] Length = 432 Score = 53.0 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 28/253 (11%), Positives = 62/253 (24%), Gaps = 40/253 (15%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 KT + L + P +++ + L+ E+ L + Sbjct: 30 RSAKTITSLIDWLDFVRNGPPGNLLMAGKTTRTLRQNCIDELVSILGTQLCSY------- 82 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 S + + + DE S P+ Sbjct: 83 -------------NEGKGVLTLLGRRIIIASGNDESSKDKIRGLSLVGAYVDELSTMPES 129 Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR---------- 256 + ++ NP I TSN N W + + R Sbjct: 130 FFSMLTSRMSDANPRL--IGTSNPDSANHWLKKKYLDKARVHLTRTGEVRTPGNDLDLAR 187 Query: 257 ------TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310 + + + + Y + + ILG++ + ++ + Sbjct: 188 LTFVIDDNPTLTPTYVQQRKAEYAATPLLYKRLILGEWCI-AEGAVYEV-FDDQRHVVDI 245 Query: 311 IDDLYAPLIMGCD 323 + ++ L +G D Sbjct: 246 VPEIVQWLGVGLD 258 >gi|312900430|ref|ZP_07759739.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis TX0470] gi|311292452|gb|EFQ71008.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis TX0470] Length = 451 Score = 53.0 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 33/282 (11%), Positives = 73/282 (25%), Gaps = 39/282 (13%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + GRG GK+ ++ I P +S + + + + +++A + + R Sbjct: 31 RYVLKGGRGSGKSFHIPMRIMLDIMEYP-VSALGVRKVQNTILKSVYANFKGAANAMGVR 89 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN- 197 H F + + + I + P+ + Sbjct: 90 HLFRF------------VDSKLEITYRPRGNKIYFAGADD--PEKIKSIKDADFPLAIMW 135 Query: 198 ----------DEASGTPDIIN-KSILGFFTELNPNRFWIMT-------SNTR-RLNGWFY 238 DE + + + + + G + + N R W Sbjct: 136 IEELAEFKTEDEVTTIENSVLREELEGKIVNESKRKNVYPFDYSFYYSYNPPKRRQSWVN 195 Query: 239 DIFNIP--LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 + + + + F E + R E LG+ Sbjct: 196 KKYESSFIDNNTYVHHSTYLGNHHLSKKFIEEAENVKANKPLKYRWEYLGE-AIGSGVVP 254 Query: 297 IPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338 + IE+ + + + + G D G D V Sbjct: 255 FGNLKIEKGCITDEMVANFDNIRNGLDF-GYATDPLAFVRWH 295 >gi|189187379|gb|ACD84549.1| terminase [Cyprinid herpesvirus 2] Length = 787 Score = 53.0 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 22/153 (14%), Positives = 47/153 (30%), Gaps = 9/153 (5%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GKTT+ + +L + + G+ I+ A + + V ++ + WF Sbjct: 233 PRRCGKTTIVSI-VLGAMLSFMGIDIMVQAQNLAMAQTI-RKHVQSFMDAYKEKSWF--- 287 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 ++S+ + T + + + DEA+ Sbjct: 288 --PDKFKYKEFTGTDKSLVYHFEPGVKDKSTTAHYLASSGNSARGQNPDICVVDEAAFVG 345 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 + S+L T + S+ + W Sbjct: 346 ANLLVSVLPLMTVKGTKQIH--ISSPGSADSWI 376 >gi|300766681|ref|ZP_07076598.1| bacteriophage terminase large subunit [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300495781|gb|EFK30932.1| bacteriophage terminase large subunit [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 632 Score = 53.0 bits (125), Expect = 8e-05, Method: Composition-based stats. Identities = 47/333 (14%), Positives = 97/333 (29%), Gaps = 47/333 (14%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 ++ WQ EF+ A+ + ++ + +++ RG GKT L A + + Sbjct: 88 PNVDTGEPTKLMPWQ-EFIMAMLIGWRNDDGGKRFSRAIVSVA--RGQGKTYLMAIITAY 144 Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLS--MLPHRHWFEMQSLSLHPSGWYAELL 158 + ++N + + + + + SK L ++ + Sbjct: 145 SFLIE----SLGLSNQDYLVSSINYKQTSKILGYIKSMLAKIATIEPFKTLIQDSGLDTR 200 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFT 216 S D + T + + H DE I+K + G Sbjct: 201 TLSSQADQVTMSKTNNKLRAISHEAGQYD-SFHFTTAIFDEIGEVRTRQKISKIVSGQVK 259 Query: 217 ELNPNRFWIMTSNTRRLNGWFYDIFNIPL-------EDWKRYQIDTRTVEGIDSGFHEGI 269 N I T+ + D I D Y + + +D + + Sbjct: 260 VRNKQFIQISTAYPDPNVPFHDDERMIQQAMEQDYLRDADTYLGLIWSQDNLDETYKPDM 319 Query: 270 ISRYG-------------------LDSDV-------ARIEILGQFPQQEVNNFIPHNYIE 303 + DSD + + L + +Q ++F+ +E Sbjct: 320 WVKSNPLLDLPSQREVLLNGLTDKRDSDALSGTLNDFQNKNLNLWLEQSTDSFLKLPDVE 379 Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 A+ D + +G D + D T + F Sbjct: 380 RAIISSFSFD-DRQVYIGFDYSMF-SDNTALAF 410 >gi|319942300|ref|ZP_08016615.1| hypothetical protein HMPREF9464_01834 [Sutterella wadsworthensis 3_1_45B] gi|319804173|gb|EFW01073.1| hypothetical protein HMPREF9464_01834 [Sutterella wadsworthensis 3_1_45B] Length = 566 Score = 53.0 bits (125), Expect = 8e-05, Method: Composition-based stats. Identities = 34/316 (10%), Positives = 82/316 (25%), Gaps = 56/316 (17%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ+ + + + I RG GK++L++ + L+ + PG Sbjct: 80 EPWQIFIL--TTSFGWRRRADGGRRFRRVYIEVPRGNGKSSLSSGVGLYCLVADKEPGAE 137 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 + A + Q K P R F ++ L+ + Y Sbjct: 138 VYSFATTRDQAKIVFGDAKQMAKQNEPLRQRFGLEVLA------------------NALY 179 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNRFWIMTS 228 + + + + + DE + + + + + W++T+ Sbjct: 180 VPSTNSTFQAKSAEGSTLDGLNTHLAVIDELHAHKTRDVYDVVETSLGKRLNSLLWVITT 239 Query: 229 NTRRLNGWFYDIFNI----------------------PLEDWKRYQIDTRTVEGIDSGFH 266 +G Y++ + +DW + + Sbjct: 240 AGFDTSGICYEVRMMVTRVLGKEISDETQFGVIYGLDDGDDWTTEEALMKANPNWGVSVM 299 Query: 267 EGIISRYGLDSDV-------ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD--LYAP 317 ++ + + + L + ++ + E Sbjct: 300 PEMVLSLQKKAIALPSAMNNFKTKHLNVWCSAS-TAWMDMQAWKRCEVPEMSITDFEGRK 358 Query: 318 LIMGCDIAGEGGDKTV 333 +G D+ G D T Sbjct: 359 CFIGLDL-GSKSDLTA 373 >gi|308180865|ref|YP_003924993.1| bacteriophage terminase large subunit [Lactobacillus plantarum subsp. plantarum ST-III] gi|308046356|gb|ADN98899.1| bacteriophage terminase large subunit [Lactobacillus plantarum subsp. plantarum ST-III] Length = 632 Score = 53.0 bits (125), Expect = 8e-05, Method: Composition-based stats. Identities = 42/333 (12%), Positives = 94/333 (28%), Gaps = 47/333 (14%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 ++ WQ EF+ A+ + ++ + +++ RG GKT L A + + Sbjct: 88 PNVDTGEPTKLMPWQ-EFIMAMLIGWRNDDGGKRFSRAIVSVA--RGQGKTYLMAIITAY 144 Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLS--MLPHRHWFEMQSLSLHPSGWYAELL 158 + ++N + + + + + SK L ++ + + Sbjct: 145 SYLIE----SLGLSNQDYLVSSINYKQTSKILGYIKSMLAKIATIEPFKSLIADSGLDTR 200 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFT 216 S D + + + H DE ++K + G Sbjct: 201 TLSSQADQVVMSSNNNKLRAISHEAGQYD-SFHFTTAIFDEIGEIKTRQKVSKIVSGQVK 259 Query: 217 ELNPNRFWIMTSNTRRLNGWFYDIFNIPL-------EDWKRYQIDTRTVEGIDSGFHEGI 269 N I T+ + D I D Y + + +D + + Sbjct: 260 VPNRQFIQISTAYPDPTVPFHDDERMIQQAMEQDYLRDADTYLGLIWSQDNLDETYKPDM 319 Query: 270 I--------------------------SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303 + + + L + +Q ++F+ +E Sbjct: 320 WVKSNPLLDLPSQREVLLNGLTDKCDSDALSGTLNDFQNKNLNLWLEQSADSFLKLPDVE 379 Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 A+ D + +G D + D T + F Sbjct: 380 RAIISSFSFD-DRQVYIGFDYSMF-SDNTALAF 410 >gi|73695754|gb|AAZ80628.1| rhUL89 [Macacine herpesvirus 3] Length = 671 Score = 52.6 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 57/175 (32%), Gaps = 18/175 (10%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GKT ++ +L+ G+SI +A+ + + + EV RH F Sbjct: 211 PRRHGKTWFIIPIICFLLKHMIGISIGYVAHQKH-VSQFVLKEVE-----FRCRHTFA-- 262 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + E + + ID K T S ++ + + DEA Sbjct: 263 ------KDYVVENKDFVISIDHKGAKSTALFASCYNTNS---IRGQNFHLLLVDEAHFIK 313 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTV 258 +ILGF + +I ++NT F + N P + Sbjct: 314 KEAFNTILGFLAQNTTKIIFISSTNTTSDATCFLTRLNNAPFDMLNVVSYVCEEH 368 >gi|70731126|ref|YP_260867.1| hypothetical protein PFL_3766 [Pseudomonas fluorescens Pf-5] gi|68345425|gb|AAY93031.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5] Length = 433 Score = 52.6 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 33/265 (12%), Positives = 72/265 (27%), Gaps = 37/265 (13%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 P F+ + AG G GKT + + P ++ A + Q+++ + + + Sbjct: 14 LPHKFRAFV-AGFGSGKTWVGCSALSKHFMEWPCVNAGYFAPTYPQIRDIFYPTMDEVA- 71 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + G ++ + + + T + Sbjct: 72 ---------------YDWGLKTKINQANHEVHIYSGRQCRGTVICRSMEKPQTIVGFKIG 116 Query: 194 AVFNDEA----SGTPDIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW 248 DE S + I+ L + + + T + + F L D Sbjct: 117 HALVDELDVLTSIKAQQAWRKIIARMRYNLPGLKNGVDVTTTPEGFKFVFQQFVKQLRDK 176 Query: 249 KRYQI-------DTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 ++ T E + + ++ Y + R + GQF + Sbjct: 177 PAFKEMYGLVQASTFDNELNLPDDYIPSLMESYPEQ--LIRAYLNGQFVNLTSGSIYHAY 234 Query: 301 Y--IEEAMSREAIDDLYAPLIMGCD 323 + + PL +G D Sbjct: 235 DRKLNQCFDT---VQAGEPLFIGMD 256 >gi|152976656|ref|YP_001376173.1| PBSX family phage terminase large subunit [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025408|gb|ABS23178.1| phage terminase, large subunit, PBSX family [Bacillus cytotoxicus NVH 391-98] Length = 434 Score = 52.6 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 37/269 (13%), Positives = 76/269 (28%), Gaps = 25/269 (9%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 ++ RG K+ + + P +I+ + LK + + + ++ L Sbjct: 32 NFYRVC-KGSRGSKKSKTTVINLTKRLMQYPWANILVVRRFSNTLKQSCYTDFKWAINRL 90 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 +H F++ + + + IT T Sbjct: 91 KVKHLFKLNESMPEIT-YIPTGQKILFRGLDDPLKITSITVDVGI-----------LCWA 138 Query: 196 FNDEASGTPDIIN-----KSILGFFTELNPNRFWIMTSNTRRLN----GWFYDIFNIPLE 246 + +EA D +SI G + + + +T N N +F+D + Sbjct: 139 WFEEAYEIEDQHKFETVVESIRGSWDSPDFFKQITVTFNPWSENHWLKSYFFDEETQAYD 198 Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306 + + E +D S Y + ARI G++ + + + Sbjct: 199 TF-AITTTYKCNEWLDKQDRARYESLYEKNPRRARIVCDGEW-GVADGLVYENFQVRDFD 256 Query: 307 SREAIDDLYAPLIMGCDIAGEGGDKTVVV 335 E G D D T + Sbjct: 257 IDEIRQRKDVQSAFGLDFGYT-NDPTALC 284 >gi|40643140|emb|CAE14675.1| unnamed protein product [Leptospira phage LE1] Length = 563 Score = 52.6 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 44/304 (14%), Positives = 85/304 (27%), Gaps = 33/304 (10%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM-MLWLISTRPGMSIICI 113 QLE +E + I + RG GK+T+ + ++WLI R +I + Sbjct: 71 QLELIEDIQSFAGKKGRAPMKIIRALS----RGFGKSTILSLCGVMWLILRRDWHFVIMV 126 Query: 114 ANSETQLKNTLWA----------EVSKWLSMLPHRHW----FEMQSLSLHPSGWYAELLE 159 + S +Q K L VS + + P + L + G + + Sbjct: 127 SASLSQAKGFLQKIVDECEDNELLVSDFPELRPAKDQKGQNVAWNDLDIVFRGGARIIAK 186 Query: 160 QSMGIDSKHYTITCRT--YSEERPDTFVGPHNTHGM---AVFNDEAS-GTPDIINKSILG 213 + R + PD + M + D A+ + ++ Sbjct: 187 GFLNAIRGTRYRQYRPDALIVDDPDEEKDVESDSRMQKKYRWFDRAALKLGNQWGIDVIL 246 Query: 214 FFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRY 273 +T L+PN + N ++D + +I Sbjct: 247 SYTTLSPNCIGEVIYN---DTKKYWDWNRKKFSAIGVRPDGSEYSTWEAGAPLSMLIKER 303 Query: 274 GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE---GGD 330 +D E + F I+ L + D++ D Sbjct: 304 EVDPISFAREKQNVILAEIDQKFKSR--IQRYTFVRPDSWEGWTLAVAVDLSLGKTQRSD 361 Query: 331 KTVV 334 + + Sbjct: 362 FSAI 365 >gi|300853553|ref|YP_003778537.1| phage terminase large subunit [Clostridium ljungdahlii DSM 13528] gi|300433668|gb|ADK13435.1| phage terminase, large subunit [Clostridium ljungdahlii DSM 13528] Length = 516 Score = 52.6 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 36/317 (11%), Positives = 87/317 (27%), Gaps = 55/317 (17%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL-ISTRPGMSII 111 WQ + ++ + N T + + + GK+ + A + L+L + + + Sbjct: 33 PWQDKIIKDIFGTVKDNGYRKYNTAY---VEIPKKNGKSEIAAAIALYLTCADNEWGAEV 89 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 ++ Q + ++ + P +L ++ M + S + + Sbjct: 90 YGCAADRQQASIVFDVAVDMVDQCP--------ALKKRIKPVISQKRLVYMPLGSFYQVL 141 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTSNT 230 + +S+ H + V DE P+ + + + + + + Sbjct: 142 SSEAFSK---------HGLNVHGVIFDELHAQPNRELYDVMTKGSGDARMQPLFFLITTA 192 Query: 231 RRLNGWFYDIFNIPLEDW---------------------------KRYQIDTRTVEGIDS 263 + ED Y+ + I Sbjct: 193 GTDRNSICYEVHQKAEDILRGKKIDKTFYPVIYGIKDEDDWSLEENWYKANPSLEHTIPI 252 Query: 264 GFHEGIISRYGLDS---DVARIEILGQFPQQEVNNFIPHNYIEEA-MSREAIDDLYAPLI 319 + + ++ R L Q+ +Q V ++P + E Sbjct: 253 EKVRDAFNSAKENPAEENIFRQLRLNQWVKQSV-RWMPMDVWNECSFEVNIEKLKGRECY 311 Query: 320 MGCDIAGEGGDKTVVVF 336 G D++ D T V Sbjct: 312 GGLDLSST-NDITAFVL 327 >gi|66395816|ref|YP_240151.1| ORF009 [Staphylococcus phage EW] gi|62636238|gb|AAX91349.1| ORF009 [Staphylococcus phage EW] Length = 421 Score = 52.6 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 26/266 (9%), Positives = 76/266 (28%), Gaps = 28/266 (10%) Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156 +++ + R M+ + + ++ L +++ ++ + H F+++ + Sbjct: 46 IIITQLIMRYPMNAVVVRKTDNTLATSVFEQIKWAIEQQKVSHLFKVKVSPM-------- 97 Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSILGFF 215 + + I R + ++ +E A + +I Sbjct: 98 ----EITYMPRGNRIIFRGAQNPERLKSLKDSRFPFSIMWIEELAEFKTEDEVTTITNSM 153 Query: 216 ----TELNPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDWKRYQIDTRTVEGIDSGFHEG 268 + + + N R W + ++ + I F + Sbjct: 154 LRGELDEGLFYKFFFSYNPPKRKQSWVNKKYESSFQPDNTFVHHSTYLDNPFIAKQFIDE 213 Query: 269 IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEG 328 + + R E LG+ +P N ++ + + + + D G Sbjct: 214 AEAAKERNELRYRWEYLGEAIGSG---VVPFNNLQIEKIPDELFRSFDNIRNAVDF-GYA 269 Query: 329 GDKTVVVFRRGN----IIEHIFDWSA 350 D V + +I + ++ Sbjct: 270 TDPLAFVRWHYDKKKRVIYAVDEYYG 295 >gi|257784380|ref|YP_003179597.1| hypothetical protein Apar_0576 [Atopobium parvulum DSM 20469] gi|257472887|gb|ACV51006.1| hypothetical protein Apar_0576 [Atopobium parvulum DSM 20469] Length = 496 Score = 52.6 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 28/228 (12%), Positives = 62/228 (27%), Gaps = 21/228 (9%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 + R GK+ +W + GM ++ A++ + + + + Sbjct: 68 AKPRQNGKSFAARLYGIWCAAIC-GMDVVYSAHNADTVDE-FFDMIVNLFTDDETYPDLA 125 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT--FVGPHNTHGMAVFNDEA 200 L + +Q + D Y R + T + DEA Sbjct: 126 ELLLKAYRQPG-----KQYLLFDCGCYKSGKRAIGRLKFSTRTTSKARGGTRSLIIIDEA 180 Query: 201 SGTPDIINKSILGFFT-ELNPNRFWIMTSNTRRLN-------GWFYDIFNIPLEDWKRYQ 252 D +IL + + + I + + + Sbjct: 181 QELTDAQLNAILPTVSASKDGSPQVIYIGTPPDPTCRGTVFKRMHDTAHSDDPGEAWWLE 240 Query: 253 IDTRTVEGIDSGFHEGI----ISRYGLDSDVARIEILGQFPQQEVNNF 296 ++V D+ E + + L S + +L ++ Q + F Sbjct: 241 WAAKSVPKEDTSDEEALDFAYETNPALGSRITERAVLNEWHQMTRDGF 288 >gi|217959638|ref|YP_002338190.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus cereus AH187] gi|217067069|gb|ACJ81319.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus cereus AH187] Length = 591 Score = 52.6 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 37/323 (11%), Positives = 82/323 (25%), Gaps = 38/323 (11%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ + ++ H + I GR GKTT+ + + + ++ PG Sbjct: 109 QPWQHFVIGSLYGWIHKDTGYRRFREGLIFI--GRKNGKTTMISGLSNYAVAKDNEPGAR 166 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK-- 167 + +AN++ Q L+ E + P ++ +E K Sbjct: 167 VYVLANTKQQAGE-LFDESRAMVQKSPLLRKHLRENQKGIFHDKTHSKIEPRASDSKKLD 225 Query: 168 ---------HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--------KS 210 + + M V+ A + Sbjct: 226 GLNTHLGIFDEIHEFKNFKLINVIKKSRGARKQPMIVYITTAGYQLEGPLVQYYEIATDV 285 Query: 211 ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGII 270 + G + F N + I P + + + ++ Sbjct: 286 LEGVIDQDRKFYFMAEMDNVDEIENPELWIKANPN------MGVSLDLPSLIDDWNTDKH 339 Query: 271 SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLIMGCDIAGEGG 329 + + + + F + +F+ ++ + + G D++ Sbjct: 340 TDAEKNDWITKQF--NIFVDNDEMSFVGIEILKRNEGVIDIKGLTGKECVAGYDLSAT-E 396 Query: 330 DKTVVV----FRRGNIIEHIFDW 348 D T GN+ W Sbjct: 397 DFTSACLEFPLDDGNVFVLSHSW 419 >gi|194015441|ref|ZP_03054057.1| phage terminase, large subunit, pbsx family [Bacillus pumilus ATCC 7061] gi|194012845|gb|EDW22411.1| phage terminase, large subunit, pbsx family [Bacillus pumilus ATCC 7061] Length = 437 Score = 52.6 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 32/266 (12%), Positives = 73/266 (27%), Gaps = 41/266 (15%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + G G K+ A ++ L + + I + + ++ + + +S L H Sbjct: 27 LVGGYGSSKSYHIALKLI-LKLLEEKRTALVIREVYDTHRESTFSLLQEIVSDLGIDHVV 85 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + +S L ++ + + ++P+ + ++ +E S Sbjct: 86 KCRSSPL------------ALTFRNGSSILFKGL---DKPEKLKSI--NNISMIWIEECS 128 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL---------------- 245 K +LG + + ++++N + W Y F Sbjct: 129 EVSYEGFKELLGRLRHPSLPLYMMLSTNPVGQDNWTYRHFFRDEQLKRFVLDDETLYKKR 188 Query: 246 ----EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301 +D + + + E + D D+ RI G F P Sbjct: 189 TVVIKDTYYHHSTAEDNLFLPKSYVEQLDELKEYDPDLYRIARKGYFGING-TKVFPQFE 247 Query: 302 IEEAMSREAIDDLYAP--LIMGCDIA 325 + G D Sbjct: 248 VRSHSDVLEAIQQIDRPLKRAGMDFG 273 >gi|302381364|ref|YP_003817187.1| hypothetical protein Bresu_0249 [Brevundimonas subvibrioides ATCC 15264] gi|302191992|gb|ADK99563.1| conserved hypothetical protein [Brevundimonas subvibrioides ATCC 15264] Length = 556 Score = 52.6 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 79/277 (28%), Gaps = 29/277 (10%) Query: 83 SAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 GRG GKT A + G + I S ++ + VS Sbjct: 156 LGGRGAGKTLAGAVWLSDQAEALGAGGRLALIGGSLHDVREVMVEGVSGIA--------- 206 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 +L+ + + + + A + DE Sbjct: 207 ---ALARWNDPKWGGVRPVFEPSRKRLVFPNGAVAQAFSAEDPEALRGPQFAAAWADEFC 263 Query: 202 GTPDIINKSILGFFTE--------LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253 P G R ++ + T + G D+ P + + Sbjct: 264 AWPRGGRGGRGGPGATLALLRMGLRLGERPRLVVTTTPKPIGALRDLRAEP-GLVQTHAA 322 Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 + + +GF EG+ YG A E+ G+ +Q + + A R ++ Sbjct: 323 TRDNADHLAAGFVEGLERLYGGTRKAA-QELEGRVVEQ-EGSLFTAEMMGRA--RGVLEG 378 Query: 314 LYAPLIMGCDI---AGEGGDKTVVVFRRGNIIEHIFD 347 + +++ D AG VV R G+ + D Sbjct: 379 SFDRIVVAIDPTTTAGGNACGIVVAGRVGDRAHVLAD 415 >gi|324325093|gb|ADY20353.1| phage terminase, large subunit, PBSX family [Bacillus thuringiensis serovar finitimus YBT-020] Length = 434 Score = 52.6 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 39/287 (13%), Positives = 81/287 (28%), Gaps = 27/287 (9%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 F+E + + + ++ RG K+ + + P +I+ + Sbjct: 16 FLEVIGKGYNR--FWHSKNFYRVC-KGSRGSKKSKTTVINLTKRLMQYPWANILVVRRFS 72 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177 LK + + + ++ L +H F+ + I R Sbjct: 73 NTLKQSCYTDFKWAVNRLKVKHLFKFNESM------------PEITYIPTGQKILFRGLD 120 Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIIN-----KSILGFFTELNPNRFWIMTSNTRR 232 + T + + +EA D +SI G + + + +T N Sbjct: 121 DPLKITSITVDVGALCWAWFEEAYEIEDQHKFETVVESIRGSYDSPDFFKQITVTFNPWS 180 Query: 233 LN----GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 N +F+D + + + E +D S Y + ARI G++ Sbjct: 181 ENHWLKSYFFDEETQAYDTF-AITTTYKCNEWLDEQDRARYESLYTKNPRRARIVCDGEW 239 Query: 289 PQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335 + + + E G D D T + Sbjct: 240 -GVADGLVYENFQVRDFDIDEIRQRKDVQSAFGLDFGYT-NDPTALC 284 >gi|126461063|ref|YP_001042177.1| phage terminase [Rhodobacter sphaeroides ATCC 17029] gi|126102727|gb|ABN75405.1| phage Terminase [Rhodobacter sphaeroides ATCC 17029] Length = 535 Score = 52.6 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 45/327 (13%), Positives = 88/327 (26%), Gaps = 61/327 (18%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS---TRPGM 108 WQ + + HS+ + + + RG KT L A + L + PG Sbjct: 45 DPWQERIVRRIYGPRHSDGTR---IVRRVVLLLPRGNRKTALCAALTLLHLIGPEREPGG 101 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 I+ A++ Q L+ E + + L E + + D Sbjct: 102 LIVSAASAHEQAME-LFNEAALIVQ----------NDQRLAKRLSVREYVSKISFKDMGT 150 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD----IINKSILGFFTELNPNRFW 224 I H V DE +++ ++ Sbjct: 151 RYIA-------VASDGKVQHGKTPNVVIADELHAWEGRAGLRQWEALDSALVKVPGTLMI 203 Query: 225 IMTSNTRRLNGWFYD----------------------IFNIPLEDWKRYQIDTRTVEGID 262 + +++ R + P +DW + G+ Sbjct: 204 VASTSGRGQENLAWQTVDYAIKVQKGEIDDPATLPVIFMAEPEDDWTDEDLWRLVNPGLA 263 Query: 263 S------GFHEGIISRYGL--DSDVARIEILGQFPQQEVNNFIPHNYIEE-AMSREAIDD 313 GF + + D L ++ Q + F+ + +E A + + Sbjct: 264 HGYPDIEGFRDKARKAVHSPFERDSFLQFNLNRWLDQTTSPFVEMHVYDEGAHEVDLEEL 323 Query: 314 L--YAPLIMGCDIAGEGGDKTVVVFRR 338 AP +G D++ VV + Sbjct: 324 EMVQAPCWLGVDLSKNEDLTCVVAAWQ 350 >gi|49186804|ref|YP_030056.1| prophage LambdaBa02, terminase, large subunit [Bacillus anthracis str. Sterne] gi|165872202|ref|ZP_02216841.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus anthracis str. A0488] gi|167633590|ref|ZP_02391914.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus anthracis str. A0442] gi|167640991|ref|ZP_02399248.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus anthracis str. A0193] gi|170688734|ref|ZP_02879938.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus anthracis str. A0465] gi|170705897|ref|ZP_02896360.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus anthracis str. A0389] gi|177654326|ref|ZP_02936255.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus anthracis str. A0174] gi|190565905|ref|ZP_03018824.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus anthracis Tsiankovskii-I] gi|227813137|ref|YP_002813146.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus anthracis str. CDC 684] gi|229600357|ref|YP_002868188.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus anthracis str. A0248] gi|254683650|ref|ZP_05147510.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus anthracis str. CNEVA-9066] gi|254721486|ref|ZP_05183275.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus anthracis str. A1055] gi|254735994|ref|ZP_05193700.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus anthracis str. Western North America USA6153] gi|254743886|ref|ZP_05201569.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus anthracis str. Kruger B] gi|254754336|ref|ZP_05206371.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus anthracis str. Vollum] gi|254757972|ref|ZP_05209999.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus anthracis str. Australia 94] gi|49180731|gb|AAT56107.1| prophage LambdaBa02, terminase, large subunit, putative [Bacillus anthracis str. Sterne] gi|164712149|gb|EDR17687.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus anthracis str. A0488] gi|167511041|gb|EDR86430.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus anthracis str. A0193] gi|167530996|gb|EDR93683.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus anthracis str. A0442] gi|170129437|gb|EDS98301.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus anthracis str. A0389] gi|170667250|gb|EDT18009.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus anthracis str. A0465] gi|172080816|gb|EDT65897.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus anthracis str. A0174] gi|190562824|gb|EDV16790.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus anthracis Tsiankovskii-I] gi|227005131|gb|ACP14874.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus anthracis str. CDC 684] gi|229264765|gb|ACQ46402.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus anthracis str. A0248] Length = 590 Score = 52.6 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 36/323 (11%), Positives = 82/323 (25%), Gaps = 38/323 (11%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ + ++ H + I GR GKTT+ + + + ++ PG Sbjct: 108 QPWQHFVIGSLYGWIHKDTGYRRFREGLIFI--GRKNGKTTMISGLSNYAVAKDNEPGAR 165 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK-- 167 + +AN++ Q L+ E + P ++ +E K Sbjct: 166 VYVLANTKQQAGE-LFDESRAMVQKSPLLRKHLRENQKGIFHDKTHSKIEPRASDSKKLD 224 Query: 168 ---------HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--------KS 210 + + M V+ A + Sbjct: 225 GLNTHLGIFDEIHEFKNFKLINVIKKSRGARKQPMIVYITTAGYQLEGPLVQYYEIATDV 284 Query: 211 ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGII 270 + G + F + + I P + + + ++ Sbjct: 285 LEGVIDQDRKFYFMAEMDSVDEIENPELWIKANPN------MGVSLDLPSLIDDWNTDKH 338 Query: 271 SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLIMGCDIAGEGG 329 + + + + F + +F+ ++ + + G D++ Sbjct: 339 TDAEKNDWITKQF--NIFVDNDEMSFVGIEILKRNEEVIDIKGLAGKECVAGYDLSAT-E 395 Query: 330 DKTVVV----FRRGNIIEHIFDW 348 D T GN+ W Sbjct: 396 DFTSACLEFPLDDGNVFVLSHSW 418 >gi|319440826|ref|ZP_07989982.1| Phage terminase large subunit [Corynebacterium variabile DSM 44702] Length = 400 Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 33/240 (13%), Positives = 70/240 (29%), Gaps = 23/240 (9%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANS-ETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 GKT +ML I+ G + + I + ++ + P R + + Sbjct: 26 RSGKTFAWILLMLEEIANYQGHAAMVIVGKNLGSIFRNVFEPIDSVPEFAPARAHIQYRQ 85 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 S + + + + DE + Sbjct: 86 GSSTAIIFGKRV----------------HVIGANDAGSESRIRGMTVGRAWCDELTVLHQ 129 Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED--WKRYQIDTRTVEGIDS 263 K +L +E T+N + W + +E+ W + ++ Sbjct: 130 AFFKQLLARMSEKGAKV--FATTNPDSPSHWLKKEYLDRIEEIPWSYHHFTMDDNPSLED 187 Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323 + + + + Y R ILGQ+ E + + ++ E + D+ L +G D Sbjct: 188 EYKDALKAEYTG--LWYRRFILGQWVSAEGAIYDMWDDESMVVAPEDMPDMQRTLALGID 245 >gi|302873679|ref|YP_003842312.1| Terminase [Clostridium cellulovorans 743B] gi|307686597|ref|ZP_07629043.1| Terminase [Clostridium cellulovorans 743B] gi|302576536|gb|ADL50548.1| Terminase [Clostridium cellulovorans 743B] Length = 514 Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 33/325 (10%), Positives = 84/325 (25%), Gaps = 55/325 (16%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL-ISTRPGMSII 111 WQ + + + T + + + GK+ + A + L+L + + Sbjct: 33 PWQDRIIRDLFGTVKEDGFRQYNTAY---VEIPKKNGKSEIAAALALYLTCGDNEWGAEV 89 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 ++ Q + ++ + P + ++ + Y Sbjct: 90 YGCAADRQQASIVFDVAVDMVDQCP----------------ALKKRIKPIISQKRLVYMP 133 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP-DIINKSILGFFTELNPNRFWIMTSNT 230 Y + + H + V DE P + + + + + + Sbjct: 134 LGSFYQVLSAEAY-TKHGLNVHGVIFDELHAQPGRELYDVMTKGSGDARKQPLFFLITTA 192 Query: 231 RRLNGWFYDIFNIPLEDW---------------------------KRYQIDTRTVEGIDS 263 + +D Y+ + ID Sbjct: 193 GNDRNSICYEVHQKADDILRGKKFDPTFYPVIYGIKDDDNWQDEANWYKANPSLGHTIDI 252 Query: 264 GFHEGIISRYGLDS---DVARIEILGQFPQQEVNNFIPHNYIEEA-MSREAIDDLYAPLI 319 I + ++ R L Q+ +Q + ++P + ++ + + Sbjct: 253 EKVRTAILSAKENPAEENIFRQLRLNQWVKQSI-RWMPMDVWDKCSFAVDIEKLRGRECY 311 Query: 320 MGCDIAGEGGDKTVVVFRRGNIIEH 344 G D++ D T V I+ Sbjct: 312 GGLDLSST-NDITAFVLIFPPTIDD 335 >gi|120611024|ref|YP_970702.1| putative terminase large subunit protein [Acidovorax citrulli AAC00-1] gi|120589488|gb|ABM32928.1| putative terminase large subunit protein [Acidovorax citrulli AAC00-1] Length = 527 Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 50/384 (13%), Positives = 100/384 (26%), Gaps = 90/384 (23%) Query: 9 QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFS-QPHRWQLEFMEAVDVHCH 67 + EL E L + L F + + G + +P+R Q F+ + Sbjct: 13 PATDAELAECLADPQWRL-FSGVLYKIMVKGDGDEDAAVLPFKPNRAQRRFIARLWH--- 68 Query: 68 SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127 + I R +G TTL A M L +A + + ++ Sbjct: 69 -----------RNLILKARQLGFTTLIAIMWLDHALFNDDQRCGIVA-QDREAAEAIFR- 115 Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187 + F Q+L + + + + H + R + R T Sbjct: 116 ---------DKVKFAYQNLPEALRERFPLARDSASELLFAHNNSSVRVATSLRGGTIHRL 166 Query: 188 HNTHGMAVFNDEASGT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243 H E PD + + G + N ++ S G FY + Sbjct: 167 H--------VSEFGKICAKYPDKAQEVVTGSIPAVPTNGVLVIESTAEGREGPFYAMTQR 218 Query: 244 PL-----------EDWKRYQIDTRTVE------------GIDSGFHEGII---------- 270 +D++ + D + + I Sbjct: 219 SQGMHLSKADLTPKDYRFHFYAWWQEPKYRLPVGSVDLTDDDHEYFDEIEGAMSCVIDEE 278 Query: 271 ----------SRYGLDSDVARIEILGQ----FPQQEVNNFIPHNY--IEEAMSREAIDDL 314 + + ++ E F ++ + + + A+ Sbjct: 279 QRTWYVATRDADFSGAAEKMWQEYPSTPAEAFQISTEGHYYAKDMAAVRKRGGILAVPVA 338 Query: 315 YAPLIMGCDIAGEGGDKTVVVFRR 338 +P+ DI D T + F + Sbjct: 339 DSPVYTFWDIGN--SDGTAIWFMQ 360 >gi|65321283|ref|ZP_00394242.1| COG4626: Phage terminase-like protein, large subunit [Bacillus anthracis str. A2012] Length = 591 Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 36/323 (11%), Positives = 82/323 (25%), Gaps = 38/323 (11%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ + ++ H + I GR GKTT+ + + + ++ PG Sbjct: 109 QPWQHFVIGSLYGWIHKDTGYRRFREGLIFI--GRKNGKTTMISGLSNYAVAKDNEPGAR 166 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK-- 167 + +AN++ Q L+ E + P ++ +E K Sbjct: 167 VYVLANTKQQAGE-LFDESRAMVQKSPLLRKHLRENQKGIFHDKTHSKIEPRASDSKKLD 225 Query: 168 ---------HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--------KS 210 + + M V+ A + Sbjct: 226 GLNTHLGIFDEIHEFKNFKLINVIKKSRGARKQPMIVYITTAGYQLEGPLVQYYEIATDV 285 Query: 211 ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGII 270 + G + F + + I P + + + ++ Sbjct: 286 LEGVIDQDRKFYFMAEMDSVDEIENPELWIKANPN------MGVSLDLPSLIDDWNTDKH 339 Query: 271 SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLIMGCDIAGEGG 329 + + + + F + +F+ ++ + + G D++ Sbjct: 340 TDAEKNDWITKQF--NIFVDNDEMSFVGIEILKRNEEVIDIKGLAGKECVAGYDLSAT-E 396 Query: 330 DKTVVV----FRRGNIIEHIFDW 348 D T GN+ W Sbjct: 397 DFTSACLEFPLDDGNVFVLSHSW 419 >gi|325107749|ref|YP_004268817.1| phage terminase-like protein protein large subunit-like protein [Planctomyces brasiliensis DSM 5305] gi|324968017|gb|ADY58795.1| phage terminase-like protein protein large subunit-like protein [Planctomyces brasiliensis DSM 5305] Length = 442 Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 43/300 (14%), Positives = 87/300 (29%), Gaps = 38/300 (12%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 P + + RG KTT A +LW++ P A ++ + + + + Sbjct: 20 EPPFQRAYLERPRGHSKTTDTAVQLLWILQNSPTRVEGLAAAADLEQGLLIRNAMQRISE 79 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + +L+ + + ++ S + ++ Sbjct: 80 VNGD---------------LCGQLVFRQQFVQNEATGSRLTVISSDVQSSW----GALPD 120 Query: 194 AVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL--EDWK 249 V DE S PD+ I + ++ +N GW +++ + W Sbjct: 121 FVICDELSHWEKPDLWYSLISSAAKKP--RCLVVVLTNAGVGRGWQFEVREAARKSDRWY 178 Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR- 308 +D I + + E + V ++ QQ +F+ E Sbjct: 179 FASLDGCQAPWIAADWLEEQRQLL--PAPVFDRLWNNRW-QQSDGSFVSLAEAEACRDEG 235 Query: 309 ---EAIDDLYAPLIMGCDIAGEGGDKTVVVF--RRGNIIEHIFDWSAKLIQETNQEGCPV 363 + D A + D TV V R G + + ++ T PV Sbjct: 236 LNYQEEGRPGRRYFAAIDYAEK-RDYTVGVVLHRDGTRL-VVD--RMDVVCPTADAPVPV 291 >gi|94694835|gb|ABF47064.1| DNA cleavage and packaging protein large subunit [Human herpesvirus 5] Length = 674 Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 18/175 (10%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GKT ++ +L+ G+SI +A+ + + + EV RH F Sbjct: 213 PRRHGKTWFIIPIISFLLKHMIGISIGYVAHQKH-VSQFVLKEVE-----FRCRHTFA-- 264 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + E + + ID + T S ++ + + DEA Sbjct: 265 ------RDYVVENKDNVISIDHRGPKSTALFASCYNTNS---IRGQNFHLLLVDEAHFIK 315 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTV 258 +ILGF + +I ++NT F + N P + Sbjct: 316 KEAFNTILGFLAQNTTKIIFISSTNTTSDATCFLTRLNNAPFDMLNVVSYVCEEH 370 >gi|85716583|ref|ZP_01047553.1| phage terminase, large subunit, putative [Nitrobacter sp. Nb-311A] gi|85696584|gb|EAQ34472.1| phage terminase, large subunit, putative [Nitrobacter sp. Nb-311A] Length = 512 Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 36/326 (11%), Positives = 74/326 (22%), Gaps = 57/326 (17%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 +G L + +Q +F+ + + R GKT A ++L Sbjct: 24 EGGLLGKPIKLLPFQRQFILDIYDNPAGTSRAYLSMA--------RKNGKTATIACLLLA 75 Query: 101 LI---STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 + I+ A + Q + W + A Sbjct: 76 HLVGPEAYQNSRIVSGAQTRNQAAEVF------------NYAWKMVMQSPELSKIIKATP 123 Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT---PDIINKSILGF 214 E+ + + + G H + DE D ++I Sbjct: 124 SEKKLTGLPMNVEYKAISADA------KGAHGGSPIVAILDEVGQIKGPTDAFVEAIETS 177 Query: 215 FTELNPNRFWIMTSNTRRLNGWFYDIFNIP----------------------LEDWKRYQ 252 + I S + + + + Sbjct: 178 QGAYDGKALLIAISTQASTDNDLFSRWLDDAASSQDPRIVSHLHAAPADCDLSDRAAWQA 237 Query: 253 IDTRTVEGIDSGFHEGIISRYGL-DSDVARIEILGQFPQQEVNN-FIPHNYIEEAMSREA 310 + E + + +D L + E N F+ + + Sbjct: 238 ANPAMGVFRSVTDIEDMARKAERLPTDENSFRWLFLNQRVEANAPFLSASVWRSCNAAVV 297 Query: 311 IDDLYAPLIMGCDIAGEGGDKTVVVF 336 P+ G D++ D T +V Sbjct: 298 ESFEGLPVYGGLDLSEV-NDLTALVL 322 >gi|238062875|ref|ZP_04607584.1| phage terminase [Micromonospora sp. ATCC 39149] gi|237884686|gb|EEP73514.1| phage terminase [Micromonospora sp. ATCC 39149] Length = 428 Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 26/269 (9%), Positives = 71/269 (26%), Gaps = 26/269 (9%) Query: 87 GIGKTTLNA-WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 GKT + +++ + + ++ + + +++ + P H + Sbjct: 35 RSGKTVASLLRLLMAIAAAPSSGRVLLFGKTRESVNRNVFSVLGDPALFGPLAHLVKYNP 94 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 + S E+ + DE + P+ Sbjct: 95 GAATGSILGREVDVL----------------GANDAKAEPKVRGMTLCIAYGDELTTIPE 138 Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT--RTVEGIDS 263 +L + T+N N W + + + + R +D Sbjct: 139 AFFTQVLARLSVAGAQL--FGTTNPDSPNHWLRKKYLLRAGELNLRTWHSTLRDNPHLDP 196 Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323 + + + Y + ILG + Q + E+ + ++ + +G D Sbjct: 197 QYVRNLTTEYVG--LWYKRFILGAWV-QAEGAVFDM-WDEDRHVIPVLPAIHRWISLGID 252 Query: 324 IA-GEGGDKTVVVFRRGNIIEHIFDWSAK 351 ++ + + +W Sbjct: 253 YGTRNATAALILGVGQDGRLHLTHEWRHD 281 >gi|321157006|emb|CBW38994.1| Phage terminase large subunit [Streptococcus phage 040922] Length = 432 Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 39/271 (14%), Positives = 82/271 (30%), Gaps = 23/271 (8%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 + ++++ + RG K+ A + + +++ I K + + + Sbjct: 29 HSRSLYRV-VKGSRGSKKSKTTALNYVVRLLKYSWANLLVIRRYSNTNKQSTYTDFKWAC 87 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 ++L H F+ + I + I R +E T + Sbjct: 88 NVLGVTHLFKFNES------------LPEITIKATGQKILFRGLDDELKITSITVDVGSL 135 Query: 193 MAVFNDEASGTPDI-----INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NIP 244 + +EA + +SI G + + +T N W +F Sbjct: 136 CWAWFEEAYQIETEDKFSTVVESIRGSLDVPDFFKQITVTFNPWNERHWLKRVFFDEETR 195 Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE 304 D + E +D + Y + ARI G++ + +++ Sbjct: 196 RADTFATTTTYKCNEWLDEVDIKRYEDLYHTNPRRARIVCDGEW-GVAEGLIYENVTVKD 254 Query: 305 AMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335 E + D L +G D G D T + Sbjct: 255 FNKDELLQDSANKLCIGLDF-GFTHDPTALC 284 >gi|154487553|ref|ZP_02028960.1| hypothetical protein BIFADO_01408 [Bifidobacterium adolescentis L2-32] gi|154084071|gb|EDN83116.1| hypothetical protein BIFADO_01408 [Bifidobacterium adolescentis L2-32] Length = 537 Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 33/323 (10%), Positives = 76/323 (23%), Gaps = 62/323 (19%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR------- 105 WQ + K + R GKTTL + W + Sbjct: 56 PWQCWLLVHALELLEDGSYRF----RKVIVLVARQNGKTTLMGVLAAWWLFVDSNKHPDR 111 Query: 106 -PGMSIICI-ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163 P + + + A +++V +W + P + Q Sbjct: 112 VPPVKFLVVGAAQTLDNAKGPYSQVKEWCNPRPE------TDEESELVVPELADMTQKFV 165 Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNR 222 + I ++ ++ V DE D ++ + ++ Sbjct: 166 NTNGEEAIVLKSKAKYIVRADKNIRAKSAARVIFDELREQHNDDGWNAVSQTTKAVWSSQ 225 Query: 223 FWI--------------------------------------MTSNTRRLNGWFYDIFN-- 242 W +N + + Y ++ Sbjct: 226 LWGISNAGDYRSVALRKQVDKGRKLVDAWKQYVADGVDAAEAFANGEQDGSFGYFEWSAP 285 Query: 243 --IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 P++D + ++ G+ R E+L Q+ ++ +I Sbjct: 286 DKCPVDDADAIRQANPSLGYGPMTVASVRSDIDGMTEAAFRTEVLCQWVTADIVPYINPK 345 Query: 301 YIEEAMSREAIDDLYAPLIMGCD 323 + +++ D Sbjct: 346 LWAYGTDNASCIPADNRVVLAVD 368 >gi|29566981|ref|NP_818544.1| gp6 [Mycobacterium phage Barnyard] gi|29425706|gb|AAN02060.1| gp6 [Mycobacterium phage Barnyard] Length = 581 Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 26/241 (10%), Positives = 58/241 (24%), Gaps = 19/241 (7%) Query: 31 FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90 +V W + P + + V + + GR +GK Sbjct: 7 YVEYVSKWTYLDAEVL----PDK-RSGGFRKVFDPHSGQLEFMEDDAQYLCATCGRRMGK 61 Query: 91 TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150 + A + + + + W V S Sbjct: 62 SAGIAHEFIPEAMI---TKEMATTLLDDGKRREFWT-VGPNYSDAEKPFRVFWNKCRALG 117 Query: 151 SGWYAELLEQSMGIDS--KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208 + + YS + V +EA+ +++ Sbjct: 118 IPFDKPGTYFDIKGGDMTVSLWDGAFIYSAKSSAVPERLVGEGLTGVHMEEAAKQKEVVW 177 Query: 209 -KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE----DWKRYQIDTRTVEGIDS 263 + I+ + W + T W+YD+ L +W ++I + + + Sbjct: 178 KQMIMPTLMDFGG---WAKFTTTPEGKNWYYDLHQKALRPSTLNWSAHRIPSWRNPHVYT 234 Query: 264 G 264 Sbjct: 235 E 235 >gi|9628694|ref|NP_043560.1| terminase [Lactococcus phage c2] gi|1146310|gb|AAA92191.1| terminase [Lactococcus phage c2] Length = 518 Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 36/293 (12%), Positives = 81/293 (27%), Gaps = 46/293 (15%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + GR K+ L+ + L + P I +A + Q + L + Sbjct: 80 VVIVGRSNAKSILDVMIALIELFLFPKPNSVIALMATKKDQAEKILMKHFRAMGN----- 134 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 Q ++ +L ++ + + + T V D Sbjct: 135 ----CQGTIINKFKNQFKLNKEQILVKDNSILKSKGTEISIYASNEDTLDGGREQLVIID 190 Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSN----------------TRRLNGWFYDIFN 242 E +I + F T+N + + + + +F Sbjct: 191 EFGAFKKNPLITIRQGLRKNKGTLFISTTNNVIRGGAYDDELESWKEWVKDDDFSHWVFY 250 Query: 243 IPLEDWKRYQIDTRTV------------EGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290 L+D+ + ++ + E I F I + + + + L Sbjct: 251 YALDDYDEVKDSSKYIKANPALGYTLSLEDIQKDFIGAIGNPVKMAKIITKRFNLSM--- 307 Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPLI-MGCDIAGEGGDK-TVVVFRRGNI 341 + +++ + D L+ +G D + G TV+ +R Sbjct: 308 TDSTTIFSKQLVDKCLV--PPLDFSGRLVAIGSDFSVRGDVWGTVIGYRENGH 358 >gi|269978258|ref|ZP_06185208.1| putative phage terminase, large subunit [Mobiluncus mulieris 28-1] gi|269933767|gb|EEZ90351.1| putative phage terminase, large subunit [Mobiluncus mulieris 28-1] Length = 477 Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 36/314 (11%), Positives = 86/314 (27%), Gaps = 64/314 (20%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 WQ + + ++ AI R GK ++ + L + II Sbjct: 24 DPWQEYALNK----ALGVGEDGKWAAYEVAIVTQRQNGKGSILEALQLAALFLWGERLII 79 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A+ + + + L LS + Y ++ + + + + Sbjct: 80 HSAHEFATAQESFQR-----VRSLIEG----CGVLSREVAHIYTSNGKEGIKLKNGNRLQ 130 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF---TELNPNRFWIMTS 228 G + DEA P +++ ++ + W +S Sbjct: 131 FKARSR-------KSARGFTGSRIIFDEALFLPRQFLGAVMPTMAAVSKTGNPQLWYTSS 183 Query: 229 N------------TRRLNGW--------------FYDIFNIPLEDWKRYQIDTRTVE--- 259 TR + G + ++ W + R Sbjct: 184 TGLADSEVLEGLRTRAVTGENAGSLCYLEWSTKSWDEMTVSERSHWDDDRAKWRADPEVW 243 Query: 260 ---------GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310 I + + + ++ D D E LG + + ++ IP + + + ++ Sbjct: 244 REANPAFEIRISADYMQKELASEMSDID-FEREHLGIWERIGGDSLIPVDVWQSLANEKS 302 Query: 311 IDDLYAPLIMGCDI 324 +++ D+ Sbjct: 303 QP--GENIVLALDV 314 >gi|75675808|ref|YP_318229.1| phage terminase [Nitrobacter winogradskyi Nb-255] gi|74420678|gb|ABA04877.1| phage Terminase [Nitrobacter winogradskyi Nb-255] Length = 537 Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 47/367 (12%), Positives = 97/367 (26%), Gaps = 67/367 (18%) Query: 27 SFKNFVMRFFPW-----GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81 + R W K H Q WQ + + H + + Sbjct: 15 DPFGYGERAVQWLRRLKHPKNPARGHPFQVDPWQERIIRKLYGPRHEDGRRVVRRLVL-- 72 Query: 82 ISAGRGIGKTTLNAWMMLWLISTR---PGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 RG KT+L + L + PG ++ A++ Q L+ EV+ + R Sbjct: 73 -LLPRGNRKTSLCGAITLLHLIGPEKLPGNLVVSAASAHEQAME-LFNEVAMIVQH--DR 128 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + ++ S R+ H V D Sbjct: 129 RLEKHLAVR---------------EYTSSITFKAQRSRYIAVASDGKVQHGKTPNVVIAD 173 Query: 199 EASGTP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD--------------- 239 E + +++ ++ + T++ R + Sbjct: 174 ELHAWEGRAGRVQWEALDSALVKVPDTLMIVATTSGRGQENLAWKTIDYAIKVQKGEIDD 233 Query: 240 -------IFNIPLEDWKRYQIDTRTVEGIDSGFHE--------GIISRYGLDSDVARIEI 284 +DW+ + G+ G+ + D D Sbjct: 234 PATLPVVFMAEEGDDWRDEAVWHALNPGMRHGYPDLTSYRDKAQKAINSPSDRDSFLQFN 293 Query: 285 LGQFPQQEVNNFIPHNYIEE-AMSREAIDDLYAPLIMGCDIAGEGGDKTVV--VFRRGNI 341 L ++ + F+ ++ A + + + +G D++ D T V +R G+ Sbjct: 294 LNRWLDHSTSPFVEMLVYDQGARAIDLDELKGEQCWIGVDLS-SNSDLTAVVACWRDGDD 352 Query: 342 IEHIFDW 348 + W Sbjct: 353 GYQVQPW 359 >gi|45190389|ref|NP_984643.1| AEL218Wp [Ashbya gossypii ATCC 10895] gi|44983285|gb|AAS52467.1| AEL218Wp [Ashbya gossypii ATCC 10895] Length = 1471 Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 2/118 (1%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTTL A ++ I R G +++ + + + + N L + L + + + Sbjct: 1085 GTGKTTLIAEII--RILARNGKNVLLTSYTHSAVDNILLKLLDSELQIARLGYKHRVHPG 1142 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 H ++ + S T D+ + + V DEAS Sbjct: 1143 VRHLVQSLEDVQTHEELVSSVDEFQVIATTCLGVNDSLLALRTKNFDYVILDEASQVS 1200 >gi|281491951|ref|YP_003353931.1| phage terminase large subunit [Lactococcus lactis subsp. lactis KF147] gi|281375660|gb|ADA65164.1| Phage protein, terminase large subunit [Lactococcus lactis subsp. lactis KF147] Length = 656 Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 46/332 (13%), Positives = 105/332 (31%), Gaps = 47/332 (14%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 ++ WQ +F+ + + ++ T+ ++S RG GKT + A +M++ Sbjct: 105 PNVDTGEPTELMPWQ-KFIMCMLIGWRNSEGGKRFTVAIISVS--RGQGKTYILAILMVY 161 Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 + ++N + + + + + SK + ++ L ++ Sbjct: 162 SFLFE----SLGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDR 217 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTEL 218 S+ D + + H DE + I+K + G Sbjct: 218 SILNDEVVMKKMNNKIRAISHEAGQYD-SFHFTTAIFDEIGEVTNREKISKIVSGQVLVK 276 Query: 219 NPNRFWIMTSNTRRLNGWFYDI----FNIPLEDWKRYQIDT------------------- 255 N I TS + F +DW R + Sbjct: 277 NHQFVQISTSYPD-PSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETW 335 Query: 256 -RTVEGIDSGFHEGIISRYGLDSD----------VARIEILGQFPQQEVNNFIPHNYIEE 304 ++ ++ + I+ + +D + + L + QQ+V++++ +E+ Sbjct: 336 LKSNPLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLYDVEK 395 Query: 305 AMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 A+ E +G D + D T + F Sbjct: 396 AIIPEFSIH-GQRCYIGIDYSMM-SDNTAIAF 425 >gi|83313380|ref|YP_423644.1| hypothetical protein amb4281 [Magnetospirillum magneticum AMB-1] gi|82948221|dbj|BAE53085.1| hypothetical protein [Magnetospirillum magneticum AMB-1] Length = 494 Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 19/153 (12%), Positives = 44/153 (28%), Gaps = 13/153 (8%) Query: 30 NFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIG 89 NF + W + P Q+ + + + + A R G Sbjct: 5 NFPEFAWIWNQR----LGLGTPRH-QVRMARWLAA-------RWHGRERELLLMAFRSSG 52 Query: 90 KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLH 149 K+T+ W+++ P + I+ +A K + V + + P + + Sbjct: 53 KSTIVGLFCAWVLACNPDLRIMVLAADLALAKKMV-RNVKRIIERHPLTQGLKPKRRDQW 111 Query: 150 PSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182 + + + S + R + Sbjct: 112 AADQFTVNRPGELRDPSMVAKGIGANITGSRAE 144 >gi|306818632|ref|ZP_07452355.1| possible phage-related terminase [Mobiluncus mulieris ATCC 35239] gi|304648805|gb|EFM46107.1| possible phage-related terminase [Mobiluncus mulieris ATCC 35239] Length = 470 Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 36/314 (11%), Positives = 86/314 (27%), Gaps = 64/314 (20%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 WQ + + ++ AI R GK ++ + L + II Sbjct: 17 DPWQEYALNK----ALGVGEDGKWAAYEVAIVTQRQNGKGSILEALQLAALFLWGERLII 72 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A+ + + + L LS + Y ++ + + + + Sbjct: 73 HSAHEFATAQESFQR-----VRSLIEG----CGVLSREVAHIYTSNGKEGIKLKNGNRLQ 123 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF---TELNPNRFWIMTS 228 G + DEA P +++ ++ + W +S Sbjct: 124 FKARSR-------KSARGFTGSRIIFDEALFLPRQFLGAVMPTMAAVSKTGNPQLWYTSS 176 Query: 229 N------------TRRLNGW--------------FYDIFNIPLEDWKRYQIDTRTVE--- 259 TR + G + ++ W + R Sbjct: 177 TGLADSEVLEGLRTRAVTGENAGSLCYLEWSTKSWDEMTVSERSHWDDDRAKWRADPEVW 236 Query: 260 ---------GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310 I + + + ++ D D E LG + + ++ IP + + + ++ Sbjct: 237 REANPAFEIRISADYMQKELASEMSDID-FEREHLGIWERIGGDSLIPVDVWQSLANEKS 295 Query: 311 IDDLYAPLIMGCDI 324 +++ D+ Sbjct: 296 QP--GENIVLALDV 307 >gi|269124153|ref|YP_003306730.1| type III restriction protein res subunit [Streptobacillus moniliformis DSM 12112] gi|268315479|gb|ACZ01853.1| type III restriction protein res subunit [Streptobacillus moniliformis DSM 12112] Length = 751 Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 30/251 (11%), Positives = 65/251 (25%), Gaps = 26/251 (10%) Query: 70 VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129 + + K + + G GKT + + + + + +L+ ++ Sbjct: 20 KTTDSNSKPKIVMQSPTGSGKTIILVAYIEKYLDFHRDSVVCWFCPGKGELEEQSKEKME 79 Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189 ++ L + F++ + + Y E D+ + + + HN Sbjct: 80 RFAPTLKTGNVFDILNTGFESATTYFINWETITKKDNTAIRD---SERKNLFERISEAHN 136 Query: 190 THGMA-VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR-RLNGWFYD------IF 241 + V DE + +N +++ R+ G FY+ I Sbjct: 137 RNLNFIVIIDEEH---QNNTSKAEDIISSINAKYEIRVSATPNKRVVGEFYEIPEIDVIN 193 Query: 242 NIPLEDWKRYQIDTRTVE-----GIDSGFHEGIISRYGLDSDVARIE-------ILGQFP 289 + T E S E +L QFP Sbjct: 194 EGLTTRFMYINDGLDTAHVENILHETDILLEKADEVRKKISRAYIDEKEDIRPLVLVQFP 253 Query: 290 QQEVNNFIPHN 300 + Sbjct: 254 NLNDDLIEHVE 264 >gi|269120042|ref|YP_003308219.1| phage terminase, large subunit, PBSX family [Sebaldella termitidis ATCC 33386] gi|268613920|gb|ACZ08288.1| phage terminase, large subunit, PBSX family [Sebaldella termitidis ATCC 33386] Length = 430 Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 37/285 (12%), Positives = 83/285 (29%), Gaps = 26/285 (9%) Query: 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136 ++ R K+ A + I P +++ + LK++ + ++ ++ L Sbjct: 41 RYRVC-KGSRASKKSKTTAINFIHNIMKYPDANLLVVRKVFRTLKDSCFTDLKWAINRLK 99 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 + ++E++ L + + + IT T + Sbjct: 100 VKDYWEIKESPLEMT-YKPTGQKILFRGLDDPMKITSITVETGV-----------LCWCW 147 Query: 197 NDEASGTP-DIINKSILGFFTELNPNRF---WIMTSNTRRLNGWFYDIFNIPLE-DWKRY 251 +EA + + P +T N W F + D Sbjct: 148 IEEAYEITKEKDFDMLNESIRGEVPENLYKQITLTFNPWNQGHWLKKRFFDVEDSDIMAK 207 Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311 + + E +D + + R+ LG++ V I N+ E E + Sbjct: 208 TTNYQCNEFLDESDKKLFEDMKVKNPRRYRVAGLGEW--GIVEGLIYENWEEREFDIEKL 265 Query: 312 DDLYAPLIM-GCDIAGEGGDKTVV---VFRRGNIIEHI-FDWSAK 351 G D D + + + N I ++ ++ K Sbjct: 266 LSRTDIKTAFGLDFGYT-NDPSGLFCGAVDKANKIIYVFDEFYKK 309 >gi|145598321|ref|YP_001162397.1| hypothetical protein YPDSF_1024 [Yersinia pestis Pestoides F] gi|145210017|gb|ABP39424.1| hypothetical protein YPDSF_1024 [Yersinia pestis Pestoides F] Length = 496 Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 42/333 (12%), Positives = 84/333 (25%), Gaps = 78/333 (23%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + I R +G TT + L L IA++ L+ +++ Sbjct: 49 RNVILKARQLGFTTEVCIIQLDLAIFHR-KECALIAHTRPDA-ERLFRNKTQF------- 99 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + M + E + + + T++ ++ Sbjct: 100 AYQRMTDDIKKANPLVKETTSEYVFKNGGSVTVSTS------------FRGGTLYSLHVS 147 Query: 199 EASGT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-------- 246 E PD + + G F + + S G+F+D + Sbjct: 148 EFGKICAKYPDKAKEIVTGAFEAVPLGGKITLESTAEGRAGYFFDYCQDAEKSQLQGKLL 207 Query: 247 ---DWKRYQIDTRTVEGIDSGFHE-----------GIISRYG----LDSDVARI---EIL 285 DWK + E + +++G + L Sbjct: 208 SNLDWKFFFFSWWKNPQYAIDPVEALPQRLVDYFSEMEAKHGVQLNERQKAWYYAKEKTL 267 Query: 286 GQ-------------FPQQEVNNFIPHN---YIEEAMSREAIDDLYAPLIMGCDIAGEGG 329 G F Q + + D+ + P+ DI G Sbjct: 268 GDDMKREYPTIPAEAFQQSVEGAYYAKQFRWLYTNKRICKLPDNSHLPVHTFWDIGV--G 325 Query: 330 DKTVVVFRRGNIIEHIF-DWSAKLIQETNQEGC 361 D T + F + + ++ E + EG Sbjct: 326 DSTAIWF-----VREVGEEFHIIDYYENSGEGL 353 >gi|320540563|ref|ZP_08040213.1| putative phage terminase, large subunit [Serratia symbiotica str. Tucson] gi|320029494|gb|EFW11523.1| putative phage terminase, large subunit [Serratia symbiotica str. Tucson] Length = 582 Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 45/338 (13%), Positives = 91/338 (26%), Gaps = 59/338 (17%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTRPGMS-- 109 WQ + A+ ++ F+ A + AG+G GK+ L A + L+ + Sbjct: 90 PWQCFIVGALFGWLNNEGQR----RFRMAYVEAGKGSGKSPLAAGIGLYCLVADNEARAE 145 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 + A + Q L+ + + P AE +++S G + Sbjct: 146 VYAAATKKDQAM-ILFRDAVAMVDQSPK----------------LAERIQKSGGAGKEWN 188 Query: 170 TITCRTYSEERP-DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 + + RP G DE ++ T+ M + Sbjct: 189 LAFLQARAFFRPISADDGQSGPRPHCALIDEIHEHKSNQVVEMMRAGTKGRQQALIFMIT 248 Query: 229 NTR-RLNGWFYDIFNIPL---------------------------EDWKRYQIDTRTVEG 260 N+ YD + + + Sbjct: 249 NSGHNKTSVCYDYHEYGRKVAEGSIEDDSFFAFICSLDEGDDPFKDSGCWKKANPSLGNT 308 Query: 261 IDSGFHEG---IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE-EAMSREAIDDLYA 316 + + + R Q+ E N++ E S + + Sbjct: 309 FSDRYLQEQVTQARGMPAKESLVRRLNFCQWVDAENPWINSDNWMACEKTSLDLATLANS 368 Query: 317 PLIMGCDIAGEGGDKTVVVFRRG-NIIEHIFDWSAKLI 353 P G D++G+ D T + + ++ W+ K Sbjct: 369 PCYGGLDLSGK-QDLTALALYWPEEKVAYVEFWTPKDT 405 >gi|281416321|ref|YP_003347561.1| DNA packaging protein B [Klebsiella phage KP32] gi|262410440|gb|ACY66705.1| DNA packaging protein B [Klebsiella phage KP32] Length = 543 Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 39/331 (11%), Positives = 82/331 (24%), Gaps = 69/331 (20%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 NP K + A RGIGK+ + ++W + P + I+ ++ S+ + + + Sbjct: 7 NPKNKKFILQAFRGIGKSFITCAFVVWTLWRDPQLKILIVSASKERADANSIF-IKNIID 65 Query: 134 MLPHRHWFEMQSLSLHPSGWYAE-LLEQSMGIDSKHYTITCRTY----------SEERPD 182 +LP + + + + K IT + E P Sbjct: 66 LLPFLSELKPRPGQRDSVISFDVGPAKPDHSPSVKSVGITGQLTGSRADIIIADDVEIPG 125 Query: 183 TFVGPHNTHGMAVFNDEASGT-------------PDIINKSILGFFTE--LNPNRFWIMT 227 + E + ++ + W Sbjct: 126 NSATQGAREKLWTLVQEFAALLKPLPTSRVIYLGTPQTEMTLYKELEDNRGYSTIIWPAQ 185 Query: 228 SNTRRLNGWFYDIFNIP------LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR 281 + +Y P ED + DS + YG + Sbjct: 186 YPRSKEEDLYYGDRLAPMLRSEYDEDKEGLSSQPTDPVRFDSMDLQEREVEYGKAGYTLQ 245 Query: 282 IEI-----LGQ-FPQQEVNNFI----------PHNYIEEAMSREAIDD------------ 313 + + +P + + + + ++ +R Sbjct: 246 FMLNPNLSDAEKYPLRLRDAIVCGLQADKAPMHYQWLPNRQNRNEELPNVGMKGDEIYSF 305 Query: 314 --------LYAPLIMGCDIAGEGGDKTVVVF 336 Y I+ D +G G D+T Sbjct: 306 HTASSNTGAYQGKILVIDPSGRGKDETGWCV 336 >gi|256850663|ref|ZP_05556088.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US] gi|256712531|gb|EEU27527.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US] Length = 418 Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 35/261 (13%), Positives = 83/261 (31%), Gaps = 36/261 (13%) Query: 80 CAISAGRGIGKTTLNAW----MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 GRG K+++ + MM++ I+ +++ICI ++ L+++++ ++ +S+L Sbjct: 9 VVCKGGRGSFKSSVISLKLVTMMMFYIAMGKTVNVICIRENQQYLRDSVYNQILWAMSIL 68 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT---HG 192 F + + + T T+ + + + + Sbjct: 69 GVESEFRTRVSPMVIQ-----------------HIRTGSTFYFYGANDPMKLKSNIVGNV 111 Query: 193 MAVFNDEASGTPD-IINKSILGFFTELN----PNRFWIMTSNTRR-LNGWFYDIFNIPLE 246 +AV+ +E S + + + F + ++ N R W + Sbjct: 112 VAVWFEEFSNLKNVNVFDQSVPTFIRQKPDFVKDVKIFISYNPPRNPYAWVNEWVTQRET 171 Query: 247 DWKRYQIDTR----TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302 D + + + + I D D R LG+ Sbjct: 172 DPDYFVDSSTYLDDELGFTTKQQLDLIEKYKQNDPDYYRWLYLGE-AVGLGTQVYNMKLF 230 Query: 303 EEAMSREAIDDLYAPLIMGCD 323 + + R D+ + G D Sbjct: 231 KV-VDRIPDDEYITDIFYGMD 250 >gi|90961262|ref|YP_535178.1| terminase large subunit [Lactobacillus phage Sal2] gi|90820456|gb|ABD99095.1| Terminase large subunit [Lactobacillus phage Sal2] Length = 627 Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 43/334 (12%), Positives = 100/334 (29%), Gaps = 54/334 (16%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 E ++ WQ +F+ + + + +++ RG GKT L A +M + Sbjct: 88 PNVDTESPTELMDWQ-KFIFCMLFGWRNLEGRKRFSRAMVSVA--RGQGKTYLMAILMCY 144 Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKW--LSMLPHRHWFEMQSLSLHPSGWYAELL 158 + ++N + + + + + +K +H + + + + Sbjct: 145 SYFIE----SLGLSNQDYLVSSINFKQTNKIFGYIKTMMKHIVKTDMFKDYAATVGFKAQ 200 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFT 216 + + K+ + ++ + D++ H DE + I+K I G Sbjct: 201 NDQIVMKEKNNVLRAISHESGQYDSY------HFTTAIFDEIGEVKSREKISKIISGQVK 254 Query: 217 ELNPNRFWIMTSNTRRLNGWFYDIFNIPL--------EDWKRYQIDTRTVEGIDSGFHEG 268 N I TS + F++ + D + + +D F Sbjct: 255 VPNHQFIQISTSYPD-PSVPFHEDQKMMQQAMEQDYKRDADNFLGLIWAQDSLDETFKPE 313 Query: 269 II--------------------------SRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302 + + + L + + N+F+ + I Sbjct: 314 TWYKSNPLLYLDGQKQVLMEGLQDKRDADMLSGNVADFQNKNLNLWLAEATNSFLKLSDI 373 Query: 303 EEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 E A+ + +G D + D T + F Sbjct: 374 ERAIQPNFNI-EGRTVYIGYDYSMF-SDNTAIAF 405 >gi|305665667|ref|YP_003861954.1| hypothetical protein FB2170_05195 [Maribacter sp. HTCC2170] gi|88710424|gb|EAR02656.1| hypothetical protein FB2170_05195 [Maribacter sp. HTCC2170] Length = 878 Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 23/204 (11%), Positives = 54/204 (26%), Gaps = 40/204 (19%) Query: 32 VMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT 91 + FPW ++Q +F+ H N + + A G GKT Sbjct: 8 LKFKFPW-------------RKYQEQFLRHFAEHVLDNHLH---------VIAPPGSGKT 45 Query: 92 TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151 L I + G + ++ + ++N + ++ + + Sbjct: 46 LLG-----IEILRQIGKKTLVLSPTL-TIRNQWEDRLQQYF-----------TTGRPFVN 88 Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211 + + + + + D + + DEA + K + Sbjct: 89 TSFDINEPRDITFSTYQGLHAFFKKQNDVQDFLEHFKSKGIKTIVLDEAHHLKNEWWKCL 148 Query: 212 LGFFTELNPNRFWIMTSNTRRLNG 235 E +T+ + Sbjct: 149 F-ALKEDQGLTIVALTATPPFDSS 171 >gi|325848842|ref|ZP_08170352.1| putative phage terminase, large subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480486|gb|EGC83548.1| putative phage terminase, large subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 462 Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 83/301 (27%), Gaps = 51/301 (16%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ ++ + + + R GK+ + L+ I G + Sbjct: 38 EWQRLILKDLLAINKDGLWTHTKCGYSL----PRRNGKSEILVMRELYAIL--KGEVVNH 91 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 A+ + + W + ++ SL +G + Sbjct: 92 TAH-------RTFTSHASWERLCMVLDDANIEYKSLRATG----RERVEIPETGGRVEFR 140 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR- 231 RT + + DEA D ++ T + IM Sbjct: 141 TRTSTGGL--------GEGFDLLIIDEAQEYTDDQESALKYTVTSSKNPQT-IMCGTPPT 191 Query: 232 ------------------RLNGWFYDIFNIPL-EDWKRYQIDTRTVEGIDSGFHEG-IIS 271 R N ++ +++P D ++ +T + + F E I Sbjct: 192 PISSGMVFVNFRKQCLTSRPNNAYWAEWSVPEMSDIHDSELWYKTNPSLGTIFTERSIED 251 Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDK 331 G D I+ LG + + I + + +++ L + +G G D Sbjct: 252 EIGSDETDFNIQRLGLWISYNQKSAITEKEWQR-LKLKSLPILTGEMHVGI---KFGNDG 307 Query: 332 T 332 T Sbjct: 308 T 308 >gi|296532346|ref|ZP_06895082.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957] gi|296267330|gb|EFH13219.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957] Length = 480 Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 39/296 (13%), Positives = 77/296 (26%), Gaps = 31/296 (10%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + A RG GK+TL WL+S P I+ +A + L + V + + P Sbjct: 45 RLLLMAFRGCGKSTLVGLYCAWLLSRWPETRILVLAA-DHLLATKMVGTVRRIVERHPLC 103 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + + +++ + + V + +A D Sbjct: 104 RAILPEVPEAWAVDRFTV--RRALALRDPSMLAAGLAGNITGARADVIICDDVEVAGNCD 161 Query: 199 EASGTPD--------IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250 A + + G + T + + Sbjct: 162 TAGKRAELRERLAETEFILTPGGTLLYVGTPHCAESLYRTPEEGEPTLAGYRRLVVPLLN 221 Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310 + + + + R G ++L + P I + Sbjct: 222 AAGRSAWPQRFPAEDVARLRERVG--PIQFSRQMLLRPVAGAAARLDPGLLIRYRDELDY 279 Query: 311 IDDLYAPL--IMG---------CDIA--GEG-GDKTVVVF----RRGNIIEHIFDW 348 + P+ +MG D A G GD +V+ GN H + Sbjct: 280 REAHGRPVLGLMGRRMVSGGGYWDPAYGRPGRGDGSVLAITYADGEGNHYLHRLHY 335 >gi|196037629|ref|ZP_03104940.1| putative phage terminase, large subunit [Bacillus cereus NVH0597-99] gi|196031871|gb|EDX70467.1| putative phage terminase, large subunit [Bacillus cereus NVH0597-99] Length = 574 Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 39/350 (11%), Positives = 92/350 (26%), Gaps = 42/350 (12%) Query: 19 LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78 + + + F KGK WQ F V N + + Sbjct: 43 IWFDVEKANAMIYFTETFLKHAKGKWAGQPLILETWQKFFFANVYGWQKYNDDGKAVRVI 102 Query: 79 KCA-ISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAE---VSKWL 132 + A + + GKT + ++ + G I AN+ Q +N + Sbjct: 103 RTAYLQVPKKNGKTIMGGSPGIYAMYGEGVKGADIYISANTFEQCQNAAGPIALTIENSP 162 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP----------- 181 + P ++ + ++ + + K T + P Sbjct: 163 DLRPDTRIYKGKEDTIKSIKYTFVEDDIKYANTIKVLTKDNAGNEGKNPYINYFDEVHAQ 222 Query: 182 ---DTFVGPHN-----THGMAVFNDEASG----TPDIINKSILGFFTELNPNRFWIMTSN 229 + + + + + A I + + +++M Sbjct: 223 MDREQYDNLRSAQIAQEEPLNIITSTAGKNTGSLGTQIYTYAKEVLKDDKDDSWFMMIYE 282 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS---DVARIEILG 286 + W + W+ + ++ F E +S + L Sbjct: 283 PNKKFDWTD------RDVWRMVNPNMDVS--VNMEFLENAFKEAQNNSFNKAEFLSKHLD 334 Query: 287 QFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 F + + +++ + + D ++G D++ D T V Sbjct: 335 VFVNYAET-YFDKDQLDKMLVDDLGDVEGLTCVIGVDLSRR-TDLTCVSI 382 >gi|332558637|ref|ZP_08412959.1| phage terminase [Rhodobacter sphaeroides WS8N] gi|332276349|gb|EGJ21664.1| phage terminase [Rhodobacter sphaeroides WS8N] Length = 535 Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 47/371 (12%), Positives = 96/371 (25%), Gaps = 73/371 (19%) Query: 27 SFKNFVMRFFPWGIKGKPLEHFSQP--------HRWQLEFMEAVDVHCHSNVNNSNPTIF 78 + R W K L+H P WQ + + H + + + Sbjct: 15 DPLGYGERAVAWLKK---LKHPKNPAIGHPFQLDPWQERIVRRIYGPRHPDGSR---IVR 68 Query: 79 KCAISAGRGIGKTTLNAWMMLWLIS---TRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 + + RG KT+L A + L + PG + A++ Q L + Sbjct: 69 RVVLLLPRGNRKTSLCAAITLLHLIGPERTPGGLTVSAASAHEQA-----------LELF 117 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 L E + + + H V Sbjct: 118 NEASLIVQHDHRLRKHLNIREYVSRIAFPKEGSRYVA-------VAADGKVLHGKTPNVV 170 Query: 196 FNDEASGTPD----IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD------------ 239 DE +++ ++ + +++ R + Sbjct: 171 IADELHAWEGRAGLRQWEALDSALVKVPGTLMLVASTSGRGQENLAWKTIEYAIRVQKGE 230 Query: 240 ----------IFNIPLEDWKRYQIDTRTVEGIDSGFHE--------GIISRYGLDSDVAR 281 P +DWK + G+ G+ + + D Sbjct: 231 IDDPATLPVIFMAEPEDDWKDEDLWHAVNPGLRHGYPDLDSYRDKARKAEFSPFERDSFL 290 Query: 282 IEILGQFPQQEVNNFIPHNYIEEA---MSREAIDDLYAPLIMGCDIAGEGGDKTVVVFR- 337 L ++ Q + F+ + + + + +D + AP +G D++ VV Sbjct: 291 QFNLNRWLDQSSSPFVEMHVYDRGAREVDLDELDMVQAPCWLGVDLSKNEDLTCVVAAWE 350 Query: 338 RGNIIEHIFDW 348 G + W Sbjct: 351 DGQDGYQVHPW 361 >gi|308174796|ref|YP_003921501.1| terminase large subunit [Bacillus amyloliquefaciens DSM 7] gi|307607660|emb|CBI44031.1| putative terminase large subunit [Bacillus amyloliquefaciens DSM 7] gi|328554740|gb|AEB25232.1| terminase large subunit [Bacillus amyloliquefaciens TA208] Length = 567 Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 38/347 (10%), Positives = 92/347 (26%), Gaps = 58/347 (16%) Query: 22 AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHR--------WQLEFMEAVDVHCHSNVNNS 73 + N+ +E S P +Q + ++ + + Sbjct: 35 EKSKTDSFNYCFNVEEAQESISFIETLSNPETGEGLELLMFQKWIIGSIFGWIRKDNGHR 94 Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 +++ R GK+ + A + G + +S + ++A + Sbjct: 95 RFKRAMISMA--RRNGKSLIVAAI---------GGKEFILGDSPQMNRKIVFAS----NA 139 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE-RPDTFVGPHNTHG 192 M RH FE ++ +++S+ + Sbjct: 140 MKQARHGFEYMQGQFRILSKQSKSIKRSVKVLKDSIEDKSSNSKAYPVASDTGKLDGFAS 199 Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS----NTR----------------- 231 DE +PD+ ++L + + S N Sbjct: 200 TVAIIDEFHESPDLKMYNVLKTGQVGLKSSLLAIVSTAGLNPNVPMYKEIQMLDRVLEGN 259 Query: 232 -RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG------------IISRYGLDSD 278 ++ +F I+ + + +T E ++ + + Sbjct: 260 LTMDDYFIAIYEQDDVEKEIDMPETWIKSNPRLEDEEAASFMVDNIKTDVQAAKVQRNLN 319 Query: 279 VARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325 ++ + Q ++IP + EA D + +G D+A Sbjct: 320 SLYVKTFNVWRQASEQSYIPLDDWNACAVEEAPDIRGKEVYIGLDMA 366 >gi|256375788|ref|YP_003099448.1| phage terminase, large subunit, PBSX family [Actinosynnema mirum DSM 43827] gi|255920091|gb|ACU35602.1| phage terminase, large subunit, PBSX family [Actinosynnema mirum DSM 43827] Length = 437 Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 23/239 (9%), Positives = 59/239 (24%), Gaps = 32/239 (13%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 GKT A + W++ R + +++ + V ++ Sbjct: 39 RSGKT--IASICTWMMFIRRAPRGPL--AIIGKTRDSAYRNVIDVMAE------------ 82 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + + I + ++ + + + DE + P+ Sbjct: 83 ---MNPGAVVYTRGAPTIRVLGRLVHVFGANDAKAEGV--LRGLTLAGAYVDEITLVPEA 137 Query: 207 INKSILGFFTELNPNRFWIMTSNTRRL-----NGWFYDIFNIPLEDWKRYQIDTRTVEGI 261 + ++G + T+N + P + ++ GI Sbjct: 138 FWQQLMGRLSVAGAQL--FGTTNPDSPMHWLRVDYLDREHTEPALGLRSFKFVLDDNPGI 195 Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIM 320 +++ R ILG++ + + R A Sbjct: 196 PEEKKRQYKAQFTG--LWYRRFILGEWV-GAEGSIYDM-LDDALHCRTAPPRERWQAAW 250 >gi|124516485|gb|EAY57993.1| putative helicase [Leptospirillum rubarum] Length = 1054 Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 58/185 (31%), Gaps = 29/185 (15%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P+ +Q E ++ ++ V F+ + + G GKT + A+ RP + Sbjct: 319 PYPFQQEILDRLE------VEREVNGSFRNLVVSATGTGKTVIAAFDFRRFREKRPDATF 372 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + +A+ + L+ +L +H+ + W A + Sbjct: 373 LFVAHRKEILEQSL-------------KHFRHILEDRNFGELWVAGSRPVHVRH------ 413 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 + S +R + V DE + + L P +T+ Sbjct: 414 VFASIQSLDRAE-LDRISPERFDYVVIDE---IHHGMAPTYRRLLETLKPRILLGLTATP 469 Query: 231 RRLNG 235 R +G Sbjct: 470 ERSDG 474 >gi|87200729|ref|YP_497986.1| Phage uncharacterized protein-like [Novosphingobium aromaticivorans DSM 12444] gi|87136410|gb|ABD27152.1| Phage uncharacterized protein-like protein [Novosphingobium aromaticivorans DSM 12444] Length = 458 Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 33/302 (10%), Positives = 68/302 (22%), Gaps = 47/302 (15%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 + D P A R GKT ++ + PG + Sbjct: 26 LFKRTDKQAEQAAMVHGPARHGLAYGGSR-SGKTFGFCELIGGRALSAPGSRHLIARLHN 84 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177 ++ ++ W +M L+ + +Q + Sbjct: 85 IDVRQSVM-----------LDTWPKMMGLAFPDVPYEVNKSDQYAKLPDGSEVWFGGLDD 133 Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI-----LGFFTELNPNRFWIMTS--NT 230 +ER D ++ +E+S ++ F N Sbjct: 134 KERVDK---ILGKEYATIYVNESSQVAYETVLTLRTRLAQACFRRDGSRLPLKGLYDLNP 190 Query: 231 RRLNGWFYDIFNIPLEDWK----------RYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280 W Y F + ++ + +H + Sbjct: 191 TGRGHWTYREFVEQVRPENGMPIEHGSRAWVAMNPVDNPHLPPEYHAELDGLPDKQRQRF 250 Query: 281 RIEILGQFPQQEVNNFIPHNYIEEAMS---------REAIDDLYAPLIMGCDIA---GEG 328 R G++ + + R +++G D + G G Sbjct: 251 R---DGKYLSEVPGALWSASDRTADDGTLMPGIDTLRRHAHPPLRRVVIGVDPSGSDGTG 307 Query: 329 GD 330 GD Sbjct: 308 GD 309 >gi|320006266|gb|ADW01295.1| phage terminase-like protein large subunit [Lactobacillus phage Sha1] Length = 632 Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 47/333 (14%), Positives = 99/333 (29%), Gaps = 47/333 (14%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 ++ WQ +F+ A+ + ++ + +++ RG GKT L A + + Sbjct: 88 PNVDTGEPTKLMPWQ-KFIMAMLIGWRNDDGGKRFSRAIVSVA--RGQGKTYLMAIITAY 144 Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLS--MLPHRHWFEMQSLSLHPSGWYAELL 158 + ++N + + + + + SK L ++ + Sbjct: 145 SYLIE----SLGLSNQDYLVSSINYKQTSKILGYIKSMLAKIATIEPFKTLIKDSGLDTR 200 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFT 216 S D + T + + H DE I+K + G Sbjct: 201 TLSSQADQVTMSKTNNKLRAISHEAGQYD-SFHFTTAIFDEIGEVKTRQKISKIVSGQVK 259 Query: 217 ELNPNRFWIMTSNTRRLNGWFYDIFNIPL-------EDWKRYQIDTRTVEGIDSGFHEGI 269 N I T+ + D I D Y + + +D + + Sbjct: 260 VRNKQFIQISTAYPDPTVPFHDDERMIQQAMEQDYLRDADTYLGLIWSQDNLDETYKPDM 319 Query: 270 ISRYG-------------------LDSDV-------ARIEILGQFPQQEVNNFIPHNYIE 303 + DSD + + L + +Q V++F+ +E Sbjct: 320 WVKSNPLLDLPSQREVLLNGLTDKRDSDALSGTLNDFQNKNLNLWLEQSVDSFLKLPDVE 379 Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 +A+ D + +G D + D T + F Sbjct: 380 KAIVPSFSFD-DRQVYIGFDYSMF-SDNTALAF 410 >gi|313207428|ref|YP_004046605.1| phage terminase, large subunit, pbsx family [Riemerella anatipestifer DSM 15868] gi|312446744|gb|ADQ83099.1| phage terminase, large subunit, PBSX family [Riemerella anatipestifer DSM 15868] gi|315023322|gb|EFT36332.1| putative phage large subunit terminase [Riemerella anatipestifer RA-YM] gi|325335115|gb|ADZ11389.1| phage terminase, large subunit, pbsx family [Riemerella anatipestifer RA-GD] gi|329025312|gb|AEB71676.1| phage terminase large subunit [Riemerella phage RAP44] Length = 432 Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 30/296 (10%), Positives = 71/296 (23%), Gaps = 47/296 (15%) Query: 62 VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121 + N +N F ++ GRG K+ NA + +S G I+ + T + Sbjct: 3 IKTQEVYNPLYTNKDKFIILLTGGRGSAKSY-NATTFVERLSFEAGHKILFSRYTMTSAR 61 Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 ++ E + + + +F + + + + +L + + S + T ++ Sbjct: 62 ISIIPEFEEKIEKEGVQEYFTVTNNEILNKFSGSSVLFRGIKTSSGNQTANLKSIQGITT 121 Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241 + ++ + N I+ N + + Y + Sbjct: 122 FVGDEMEEWESE------------EDYEKLILSIRQKNKQLRVILILNPTDSDHFIYKKY 169 Query: 242 NIPLEDWK----------------RYQIDTRTV-EGIDSGFHEGIISRYGLDSDV----- 279 E + F I + Sbjct: 170 IENTHKIVQIDGVDVQISTHPDVLHIHTTYLDNIENLSEQFLSNIERIKQESIEQCTING 229 Query: 280 -----------ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI 324 +I+G++ N+ E D Sbjct: 230 KLAQVLFNKSKYAQKIIGRWADMAEGVIFT-NWKEGDFDTSIPYCYGQDYGFSIDP 284 >gi|317501194|ref|ZP_07959399.1| terminase [Lachnospiraceae bacterium 8_1_57FAA] gi|331090060|ref|ZP_08338949.1| hypothetical protein HMPREF1025_02532 [Lachnospiraceae bacterium 3_1_46FAA] gi|316897370|gb|EFV19436.1| terminase [Lachnospiraceae bacterium 8_1_57FAA] gi|330402522|gb|EGG82091.1| hypothetical protein HMPREF1025_02532 [Lachnospiraceae bacterium 3_1_46FAA] Length = 464 Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 39/313 (12%), Positives = 70/313 (22%), Gaps = 50/313 (15%) Query: 39 GIKGKPLEHFSQPH--RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96 G + L + WQ + + + R GK+ Sbjct: 24 GQEAAELYAKTGNELLEWQQLLQCDIMAVNDDGLWMHQKYGYSV----PRRNGKSENVLA 79 Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156 LW + G I+ A+ T +W + + + S + A Sbjct: 80 RCLWGLKN--GERILYTAHRATTSH-AVWERLDRMCEKAGIK----------ISSSFKAF 126 Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT 216 E D RT S + DEA + S+ + Sbjct: 127 GKEHLYTSDGGVVEFRTRTSSGGL--------GEGYDVLIIDEAQEYTEAQETSLKYIVS 178 Query: 217 ELNPNRFWIMTSNTRRLNGWF-----YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI-- 269 + + IM Y + + + + E Sbjct: 179 DSENPQT-IMLGTPPTAVSAGTVFTKYRETVLAGRGFDSGWAEWSVENLTPANDVEAWYE 237 Query: 270 --------------ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY 315 + D I+ LG + + + I E L Sbjct: 238 TNPSLGTILTERKIRAEITTDDIDFNIQRLGLWLKYNQKSAISKTEWESLAIAS-KPKLK 296 Query: 316 APLIMGCDIAGEG 328 L +G +G Sbjct: 297 GELFVGVKYGHDG 309 >gi|18071222|ref|NP_542306.1| hypothetical protein PBC5p46 [Sinorhizobium phage PBC5] gi|17940328|gb|AAL49572.1|AF448724_9 unknown [Sinorhizobium phage PBC5] Length = 514 Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 32/357 (8%), Positives = 76/357 (21%), Gaps = 86/357 (24%) Query: 33 MRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTT 92 + + L ++P Q + + + + + R G +T Sbjct: 27 LYYILDKNGDTVLFKPNEP---QRKLLRRMWH--------------RNIVPKARQRGFST 69 Query: 93 LNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSG 152 L ++L IA + ++ LP L Sbjct: 70 LIQIIILDACLFNENQRAAIIAQDRVTASKIMRNKIEFAYDRLPPW---------LRQKV 120 Query: 153 WYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212 + + + DT H + + + +P K + Sbjct: 121 PIVTDNVEEKIFANGSSIQVSTSARG---DTLNWLHISEFGIICFE----SPTKAEKIVT 173 Query: 213 GFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP-----------LEDWKRYQIDTRTVEGI 261 G + S + +G +Y++ ++ + + Sbjct: 174 GSLAAA-AQGMIFIESTAKGRDGAYYNMVMEALALAEAGKRLNRLQYRLHFASWWDADEY 232 Query: 262 ------------DSGFHEGIISRYGLDSDVARIEI-----LGQFPQQEVNNF--IPHNYI 302 D + + + G A+ F ++ + P Sbjct: 233 AMDPHGVIIEPKDHKYFDELEREIGRPISEAKRAWYVSTRRSDFADEDEKMWQEYPSTVR 292 Query: 303 EE--------------------AMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRG 339 E P+ D+ D + F + Sbjct: 293 EAFKVSVEGVILAKQMSIARSQNRITRVPYRPELPVNTFWDLGV--DDDIAIWFHQA 347 >gi|75675664|ref|YP_318085.1| phage terminase [Nitrobacter winogradskyi Nb-255] gi|74420534|gb|ABA04733.1| phage Terminase [Nitrobacter winogradskyi Nb-255] Length = 537 Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 47/367 (12%), Positives = 97/367 (26%), Gaps = 67/367 (18%) Query: 27 SFKNFVMRFFPW-----GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81 + R W K H Q WQ + + H + + Sbjct: 15 DPFGYGERAVQWLRRLKHPKNPARGHPFQLDPWQERIIRKLYGPRHEDGRRVVRRLVL-- 72 Query: 82 ISAGRGIGKTTLNAWMMLWLIS---TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 RG KT+L + L + +PG ++ A++ Q L+ EV+ + R Sbjct: 73 -LLPRGNRKTSLCGAITLLHLIGPERQPGNLVVSAASAHEQAME-LFNEVAMIVQH--DR 128 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + ++ S R+ H V D Sbjct: 129 RLEKHLAVR---------------EYTSSITFKAQRSRYIAVASDGKVQHGKTPNVVIAD 173 Query: 199 EASGTP----DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD--------------- 239 E + +++ ++ + T++ R + Sbjct: 174 ELHAWEGRAGRVQWEALDSALVKVPDTLMIVATTSGRGQENLAWKTIDYAIKVQKGEIDD 233 Query: 240 -------IFNIPLEDWKRYQIDTRTVEGIDSGFHE--------GIISRYGLDSDVARIEI 284 +DW+ + G+ G+ + D D Sbjct: 234 PATLPVVFMAEEGDDWRDEAVWHALNPGMRHGYPDLTSYRDKAQKAINSPSDRDSFLQFN 293 Query: 285 LGQFPQQEVNNFIPHNYIEE-AMSREAIDDLYAPLIMGCDIAGEGGDKTVV--VFRRGNI 341 L ++ + F+ ++ A + + +G D++ D T V +R G+ Sbjct: 294 LNRWLDHSTSPFVEMLVYDQGARAVNLDELKGESCWIGVDLS-SNSDLTAVVACWRDGDD 352 Query: 342 IEHIFDW 348 + W Sbjct: 353 GYQVQPW 359 >gi|262047928|ref|ZP_06020873.1| terminase large subunit [Lactobacillus crispatus MV-3A-US] gi|260571781|gb|EEX28357.1| terminase large subunit [Lactobacillus crispatus MV-3A-US] Length = 631 Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 45/328 (13%), Positives = 90/328 (27%), Gaps = 40/328 (12%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW---- 96 L WQ + ++ N IS GRG GKT + Sbjct: 88 PDVDLHKPLPLMLWQKFILAMINGWKDQNGERRFTD---IHISVGRGQGKTQIAGVQMCK 144 Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156 +L + AN+ Q L+ V K L + F+ + + Sbjct: 145 AVLIDTLNFTNKDFLITANTSDQ-STKLFGYVKKMLEAVIKIEPFKSLAKEAGLDLQTNQ 203 Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--------IIN 208 L+E+ ++K + I+ + + ++ G D S D Sbjct: 204 LIEK--KTNNKVWKISYEADKYDSTHNVLAIYDETGALDTYDRISDITDGQGQVKPYHQF 261 Query: 209 KSILGFFTELNPNRFWIMTSN--------TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 I + + + +R + ++ D Sbjct: 262 IKISSAYPDPTSPFHQEQITMQHIMEKDYSREGDNSLCLVWAQDDLDETFKPETWEKSNP 321 Query: 261 IDSGFHEGIISR-----YGLDSDV-------ARIEILGQFPQQEVNNFIPHNYIEEAMSR 308 + E R D + + + L + +Q +++ +E A+ Sbjct: 322 LIGLSKEEQERRTSNLIKQRDQAMLANTLHKFQNKNLNVWLKQSTASYLNLKDVENAIDD 381 Query: 309 EAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 + D + +G D + D T + F Sbjct: 382 DFKVD-GREVYIGFDYSMF-SDNTAIGF 407 >gi|307128279|ref|YP_003880310.1| phage terminase large subunit [Streptococcus pneumoniae 670-6B] gi|306485341|gb|ADM92210.1| phage terminase, large subunit, pbsx family [Streptococcus pneumoniae 670-6B] gi|321157268|emb|CBW39251.1| Phage terminase large subunit [Streptococcus phage 2167] Length = 432 Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 85/291 (29%), Gaps = 25/291 (8%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTI--FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 Q + + + + + ++ + RG K+ A + + +++ Sbjct: 9 QSDIVIDLPKTVGAGYGQFWRSRNLYRV-VKGSRGSKKSKTTALNYVVRLLKYSWANLLV 67 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 I K + + + ++L H F+ + I + I Sbjct: 68 IRRYSNTNKQSTYTDFKWACNVLGVTHLFKFNES------------LPEITIKATGQKIL 115 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI-----INKSILGFFTELNPNRFWIMT 227 R +E T + + +EA + +SI G + + +T Sbjct: 116 FRGLDDELKITSITVDIGSLCWAWFEEAYQIETEDKFSTVVESIRGSLDVPDFFKQITVT 175 Query: 228 SNTRRLNGWFYDIF---NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 N W +F D + E +D + Y + ARI Sbjct: 176 FNPWNERHWLKRVFFDEETRRADTFATTTTYKCNEWLDGVDIKRYEDLYHTNPRRARIVC 235 Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335 G++ + +++ E + D L +G D G D T + Sbjct: 236 DGEW-GVAEGLIYENVTVKDFDKDELLRDSANKLCIGLDF-GFTHDPTALC 284 >gi|167600439|ref|YP_001671939.1| terminase large subunit [Pseudomonas phage LUZ24] gi|161168302|emb|CAP45467.1| terminase large subunit [Pseudomonas phage LUZ24] Length = 482 Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 43/295 (14%), Positives = 72/295 (24%), Gaps = 47/295 (15%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML---------WL 101 P+ WQ +F+ A G GKT A++M W Sbjct: 28 PYGWQEKFIAASSNCAQ------------LLAMTGNRCGKTYTGAFIMACHLTGRYPEWW 75 Query: 102 ISTRPGMSIICIAN--SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159 + + C A S ++ L +E +L E + P E + Sbjct: 76 TGRKYDRPVNCWAAGISTDTTRDILQSE------LLGDWKNPEAFGTGMIPKEDIVETIR 129 Query: 160 QSMGID-------SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212 + + + T ++ DE DI + + Sbjct: 130 REGKPGCVQAVVVKHTSGGLSSLIFKSYEMSQDKFMGTAIDVIWLDEECP-KDIYTQCVT 188 Query: 213 GFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK-RYQIDTRTVEGIDSGFHEGIIS 271 T +T F L+ + + E ++S Sbjct: 189 RTATTGG---IVYLTFTPEHGLTEIVKDFLQDLKPGQFLVHASWEDAPHLSPEVKEQLLS 245 Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA-PLIMGCDIA 325 Y R E P P +EE E I+G D+ Sbjct: 246 VYSPAERRMRAEG---VPMLGSGVVFP--ILEEKFVCEPFQIPDHFHRIIGIDLG 295 >gi|329115490|ref|ZP_08244238.1| Putative protein YmfN [Acetobacter pomorum DM001] gi|326695200|gb|EGE46893.1| Putative protein YmfN [Acetobacter pomorum DM001] Length = 576 Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 29/272 (10%), Positives = 69/272 (25%), Gaps = 35/272 (12%) Query: 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSII 111 WQ + V H + I RG K+TL++ + L++++ PG + Sbjct: 87 WQCFILTTVFGWLHKKTG--FRRFRRSFIGVPRGNAKSTLSSGVALFMLTADGEPGPEVY 144 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A + Q K + P + + + + Sbjct: 145 SAATTRDQAKIVFGDAQAMTRKTPPLASKYGLDVQQRGIISACNDGI------------- 191 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNRFWIMTSNT 230 + + H DE + + + + + + W +T+ Sbjct: 192 FRPLSRDADTQDGLNIH-----FGCLDEVHAHKTREVYDVVETGAGKRDQSLIWAITTAG 246 Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290 +G Y+++ ++ D + D I Sbjct: 247 SNRSGIGYELWTYLEAVLRKVLADWEESPYP-------LKGDQAEDEQFFGIIYT---ID 296 Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGC 322 + P ++ + + + G Sbjct: 297 DGDDWTDPASWQKANPNWGVSVMPD--YVAGL 326 >gi|299146040|ref|ZP_07039108.1| putative phage terminase, large subunit [Bacteroides sp. 3_1_23] gi|298516531|gb|EFI40412.1| putative phage terminase, large subunit [Bacteroides sp. 3_1_23] Length = 540 Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 83/301 (27%), Gaps = 31/301 (10%) Query: 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSII 111 WQ + + T +S R GKT L A + L+ + G ++ Sbjct: 72 WQQFIIANILGFYWKGTGTRRFTSSYIEVS--RKQGKTALAAALCLYYLIADGEDGAEVL 129 Query: 112 CIANSETQLKNTL---------WAEVSKWLSMLPHRHWFEMQSLSLH-PSGWYAELLEQS 161 ANS+ Q K K+L+ F+ + L + ++L + Sbjct: 130 LAANSKEQAKIAFDMCSKFSKGLDTKGKYLTAYRADILFKATNSKLKVLAADDSKLDGFN 189 Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE---- 217 +T + A + + E Sbjct: 190 ASFGLLDEYHAAKTSKVRDVIKSSMGMRENPHLCTITTAGFDKTLPCYQLRTVAIEVLNE 249 Query: 218 -LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRY--- 273 + + +I + + W + ++ + S + +G + + Sbjct: 250 LKSDDEMFIAIYSLDADDDW--------RSEKNWMKVAPNLNVTVTSKYIKGQVQQAINN 301 Query: 274 GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTV 333 D R + L Q+ + I+ + + P +G D+A D T Sbjct: 302 PSDEVGVRTKTLNQWCDSATVWLSDESIIKCTQAVDLSKFRGLPCYIGVDLAAT-SDLTA 360 Query: 334 V 334 V Sbjct: 361 V 361 >gi|321157214|emb|CBW39198.1| Phage terminase large subunit [Streptococcus phage 8140] Length = 432 Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 39/291 (13%), Positives = 85/291 (29%), Gaps = 25/291 (8%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTI--FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 Q + + + + + ++ + RG K+ A + + +++ Sbjct: 9 QSDIVIDLPKTVGAGYGQFWRSRSLYRV-VKGSRGSKKSKTTALNYVVRLLKYSWANLLV 67 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 I K + + + ++L H F+ + + + I Sbjct: 68 IRRYSNTNKQSTYTDFKWACNVLGVTHLFKFNES------------LPEITVKATGQKIL 115 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI-----INKSILGFFTELNPNRFWIMT 227 R +E T + + +EA + +SI G + + +T Sbjct: 116 FRGLDDELKITSITVDVGSLCWAWFEEAYQIETEDKFSTVVESIRGSLDVPDFFKQITVT 175 Query: 228 SNTRRLNGWFYDIF---NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 N W +F D + E +D + Y + ARI Sbjct: 176 FNPWNERHWLKRVFFDEETSRADTFATTTTYKCNEWLDEVDIKRYEDLYHTNPRRARIVC 235 Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335 G++ + +++ E + D L +G D G D T + Sbjct: 236 DGEW-GVAEGLIYENVTVKDFDKDELLRDSANKLCIGLDF-GFTHDPTALC 284 >gi|124005744|ref|ZP_01690583.1| hypothetical protein M23134_03970 [Microscilla marina ATCC 23134] gi|123988812|gb|EAY28418.1| hypothetical protein M23134_03970 [Microscilla marina ATCC 23134] Length = 535 Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 51/275 (18%), Positives = 88/275 (32%), Gaps = 27/275 (9%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 AG+G GKT + LIS PG+ AN++ QL ++ V L + E Sbjct: 32 MAGQGAGKTHGAGLISFRLISNFPGVFGFMGANTDMQLTDSTLYRVFLVWKDLGLEEYDE 91 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE-----ERPDTFVGPHNTHGMAVFN 197 + G G K Y ++ + + Sbjct: 92 HTGEGDYVVGTQPPRHFSREGHAFKSYRNKISFWNGCVVFIGSLENYKAHDGKEFAWAIL 151 Query: 198 DEASGTPDI-INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256 DE T + + + ILG + + + T + + N P + + Sbjct: 152 DETKDTREEAVQEVILGRLRQQGLYISIVSKALTDKEYDEGNTVANQPFNPLYIFTSPAK 211 Query: 257 TVEGID-----SGFHEGIISRYGLDSDVARIEILG--QFPQQEVNNF----IPHNYIEEA 305 V I+ + + E I ++ + ++ G +F + +P NYIE+ Sbjct: 212 -VPWINDWFELNEYEEEIKAKIYDPPRYFKKQVSGGSKFVVISATHLNLKNLPSNYIEK- 269 Query: 306 MSREAIDDLYAPLIMGCDI-AGEGG------DKTV 333 + LI G D A GG D +V Sbjct: 270 QETNLASHRHGMLIYG-DPLAKSGGEFWKQWDASV 303 >gi|312873790|ref|ZP_07733834.1| putative phage terminase, large subunit [Lactobacillus iners LEAF 2052A-d] gi|311090671|gb|EFQ49071.1| putative phage terminase, large subunit [Lactobacillus iners LEAF 2052A-d] Length = 570 Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 36/297 (12%), Positives = 85/297 (28%), Gaps = 56/297 (18%) Query: 77 IFKCAISA-GRGIGKTTLNAWMMLWLISTRP----GMSIICIANSETQLKNTLWAEVSKW 131 F AI + R GK+ + A + L+++ I AN Q K + + Sbjct: 95 RFTMAIVSMARKQGKSIIVAGIALYMLRYEKTPLVARQIYTAANKRDQAK-VTFNYAVAF 153 Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191 L L + Q + + +K G + Sbjct: 154 LDSLRKISKYFRQHTRIKRDEIEDVSSHSFIKPLAKET---------------KGIQGLN 198 Query: 192 GMAVFNDE-ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD----------- 239 + DE A + ++I + ++++ + +NGWF++ Sbjct: 199 ALLGILDEQADSNDRTVLEAIQKSQRQQEQPLTIVISTVSTNVNGWFHEKEYRYATQVLN 258 Query: 240 -----------IFNIPLEDWKRYQIDT----------RTVEGIDSGFHEGIISRYGLDSD 278 + ++ + + + + + E +++ Sbjct: 259 GEIKDDSYFAIWYEQESDEELQDEKTWIKSNPILINKKISKKLLPKLREDWERAQSMETT 318 Query: 279 VARIEILGQ-FPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334 + + Q +++I + E + + +G D+A G D + V Sbjct: 319 TSSKIFTFNMWQQASEDSYISVKEWANTLVEEKPNLYGRDVYLGMDLARVG-DLSAV 374 >gi|13095610|ref|NP_076521.1| cleavage/packaging protein [Bovine herpesvirus 4] gi|4928934|gb|AAD33781.1|AF139096_4 viral terminase [Bovine herpesvirus 4] gi|12802560|gb|AAK07952.1|AF318573_32 cleavage/packaging protein [Bovine herpesvirus 4] Length = 682 Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 20/175 (11%), Positives = 52/175 (29%), Gaps = 16/175 (9%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GKT + ++ L+++ + I +A+ + ++ WF + Sbjct: 218 PRRHGKTWIVVAIISVLLASVENVHIGYVAHQKHVANAVFTEIITTLYQ------WFPSK 271 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 ++ + + T ++ DEA+ Sbjct: 272 NIEIKKENGTIIYTKPGRKP---------STLMCATCFNKNSIRGQTFNILYVDEANFIK 322 Query: 205 DIINKSILGFFTELNPNRFWIMTSNT-RRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 +ILGF + + +I + N+ + + +++ N + Sbjct: 323 KEALPAILGFMLQKDAKIIFISSVNSADKSTSFLFNLRNAKEKMLNVVNYVCPEH 377 >gi|307545236|ref|YP_003897715.1| hypothetical protein HELO_2646 [Halomonas elongata DSM 2581] gi|307217260|emb|CBV42530.1| hypothetical protein HELO_2646 [Halomonas elongata DSM 2581] Length = 534 Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 39/336 (11%), Positives = 78/336 (23%), Gaps = 67/336 (19%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + + I R +G TT L R + CI Sbjct: 52 QGKVRRFRPNRAQRR--RYIKGHVRDIILKARQLGFTTFEMIDALDDCLFRDNFAAGCIC 109 Query: 115 NSETQLKNTLWAEVSKWLSMLPH-RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173 + ++ +VS + H P + + D+ Sbjct: 110 HKLDDAQDIFRNKVSFAYQSIDDTWHRIFKMLGIRIPQPVSDKSGSGAYVFDNGSSIKVS 169 Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGT----PDIINKSILGFFTELNPNRFWIMTSN 229 +Y T H E P + + G F + + S Sbjct: 170 TSYRG---GTLQRLH--------ISEFGKICRQYPHKAQEIVTGAFEAVGLGNQITLEST 218 Query: 230 TRRLNGWFYDIFNIPLE-----------DWKRYQIDTRT------------VEGIDSGFH 266 G+F+D D++ + V + Sbjct: 219 AEGREGYFFDYCQSAQHLQELGRAPTLMDFQFHFFPWWQEPAYRLDPEGVLVPQWLREYF 278 Query: 267 EGIISRYGLDSDVARIEILGQ--------------------FPQQEVNNFIPHNY----I 302 E + ++G+ +D A+ + F Q + Sbjct: 279 EDLEHKHGIATDAAQQAWYAKKAEVLQDDMKREYPSTPAEAFEQSIEGAYYASQMRFLRK 338 Query: 303 EEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338 + ++ E + P+ D+ D + F + Sbjct: 339 NKRITAEVQVNPSLPVFTAWDLGM--NDTMAIWFAQ 372 >gi|325126369|gb|ADY85699.1| Putative helicase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 1046 Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 62/192 (32%), Gaps = 28/192 (14%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 LE +P+ +Q E ++ + + +K + A G+GKT + A+ ++ Sbjct: 316 LETSIRPYNYQQEILDRMQA------EREVYSHYKNLLVAATGVGKTVIAAFDFKRYLAE 369 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 P ++ +A+ + L+ +L + L+ H Q + S + Sbjct: 370 HPHARLLFVAHRQEILEQSLQK-FREVLNDFNFGHLLVGQYKTDDVSQLFV--------- 419 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224 S + + + DE + + + P Sbjct: 420 ---------SIQSFNSEKIADLLPSDYYDFIIIDEFHHAAAKSYQKL---LSHFKPKILL 467 Query: 225 IMTSNTRRLNGW 236 +T+ R++G Sbjct: 468 GLTATPDRMDGQ 479 >gi|269838926|ref|YP_003323618.1| hypothetical protein Tter_1890 [Thermobaculum terrenum ATCC BAA-798] gi|269790656|gb|ACZ42796.1| hypothetical protein Tter_1890 [Thermobaculum terrenum ATCC BAA-798] Length = 534 Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 30/308 (9%), Positives = 73/308 (23%), Gaps = 48/308 (15%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 +Q++ + + A+ R GK + A ++ L+ G Sbjct: 86 RPYQVDAAREILRAVERGGGDM------LAVVFSRQAGKDEMLAQLLAMLLWKYRWRGGQ 139 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ + + + L R ++ + Sbjct: 140 VVVVQPTMQPQGMISRRRLLDRLPGALVRGLLRVEENMV----------------AVGKA 183 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 ++T + S E + + +EA ++ M + Sbjct: 184 SVTFLSASPEASARGNTAS----LLLVANEAQDISPDRWDAVFDPMAASTNATTIFMGTV 239 Query: 230 TRRLN-----GWFYDIFNIPLEDWKRYQIDTRTVEGIDS---GFHEGIISRYGLDSDVAR 281 + + + + + + + V + I++ G R Sbjct: 240 WTSRTLLARQMRYLRQLELEVGRRRVFMVPWQEVARHVPAYGERVQARIAQLGRHHPFVR 299 Query: 282 IEILGQFPQQEVNNFIPHNYIEEAMS---REAIDDLYAPLIMGCDIAGE--------GGD 330 E + + F P E R+ + D+ GE D Sbjct: 300 TEYCLE-ELSDDGGFFPPAVTERMRGDHPRQLLPTPGRTYAALLDVGGEDLAAGPSPRRD 358 Query: 331 KTVVVFRR 338 T + Sbjct: 359 STALTIVE 366 >gi|209885280|ref|YP_002289137.1| large subunit putative phage terminase [Oligotropha carboxidovorans OM5] gi|209873476|gb|ACI93272.1| large subunit putative phage terminase [Oligotropha carboxidovorans OM5] Length = 534 Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 47/374 (12%), Positives = 104/374 (27%), Gaps = 64/374 (17%) Query: 4 LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63 + + E+ + L + + + F + K + Q W + + Sbjct: 1 MRPAWLFDDSEIADPLGYGQRAVDFLRALKH-----PKSRLAGRAFQLDPWVERLVRRIY 55 Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM---LWLISTRPGMSIICIANSETQL 120 ++ T+F RG KT++ A ++ + P + A Q Sbjct: 56 GPRDADGQRQVRTVFAMV---PRGARKTSIGAALVCLHTFGAERVPNGQTVSAAADAKQA 112 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 + + E + + H + + L ++ G + + T Sbjct: 113 R-IAYDEATGII------HADPIIAKKLKLRPGTYKIQHVRKGATYEAISSDGAT----- 160 Query: 181 PDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239 H + +DE + +++ + + + I T+ R +D Sbjct: 161 ------QHGRTVNFLLSDEIHAWKKRDLWEALRTSLAKTSESLHVITTTAGRGQENLAFD 214 Query: 240 IFNIPLE----------------------DWKRYQIDTRTVEGIDSGFHE--------GI 269 I+ DWK + G+ G+ + Sbjct: 215 IYEYAKRVASGEIEDPTFLPVLFEPDKGADWKDEAVWHEVNPGLALGYPDIKGLRAMARE 274 Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLIMGCDIAGEG 328 D D + L +P + F+ +E + + D++ Sbjct: 275 AESRPSDQDAFKQYHLNFWPDHSSSPFVDMATYDEGAEPIDLTALEGGECWLAADLS-SS 333 Query: 329 GDKTVV--VFRRGN 340 D TV+ FR G+ Sbjct: 334 TDLTVIIAAFREGD 347 >gi|145514572|ref|XP_001443191.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124410569|emb|CAK75794.1| unnamed protein product [Paramecium tetraurelia] Length = 1510 Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 26/188 (13%), Positives = 52/188 (27%), Gaps = 18/188 (9%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 I A G GKT + + ML + P ++ IA + K L W L Sbjct: 743 NILIGAPTGSGKTIMAEFAMLRVFKQSPQFKVVYIAPLKAIAKERL----KDWTKRLKEI 798 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + ++ + A L + + + R++ + + D Sbjct: 799 NKNVLELTGDYTPDLQALLKAHVLITTPEKWDGISRSW-----NNREYVR--QTCLLIFD 851 Query: 199 EASGTPDIINKSILGFFT-------ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY 251 E + + + + N I S + F + + + Sbjct: 852 EIHLLGQDRGQVLEVIVSRMNSLSYDTNKKTRMIGLSTAMANGLDVSNWFGVKKGRFYNF 911 Query: 252 QIDTRTVE 259 + R V Sbjct: 912 KPSCRPVP 919 >gi|327333194|gb|EGE74918.1| hypothetical protein HMPREF9337_00782 [Propionibacterium acnes HL096PA3] Length = 443 Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 41/307 (13%), Positives = 87/307 (28%), Gaps = 41/307 (13%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE--VSKWLSMLPHRH 139 + R GK + + L+ + + G I+ A+ + + P + Sbjct: 4 VFVPRQNGKNAILEVVELFKATIQ-GRRILHTAHELKSARKAFMRLRSFFENERQFPDLY 62 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 ++S+ L K E + + DE Sbjct: 63 R-MVKSIRATNGQEAIVLHHPDCATFEKKCGCPGWGSVEFVARSRGSARGFTVDDLVCDE 121 Query: 200 ASGTPDIINKSILGFFT-ELNPNRFWIMTSNTR------------------RLNGWFYDI 240 A D +++L + + + I + + Sbjct: 122 AQELSDEQLEALLPTVSAAPSGDPQQIFLGTPPGPLADGSVVLRLRGQALGGGKRFAWTE 181 Query: 241 FNIPLE--------DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ- 291 F+IP E W++ DT G F + + E LG + + Sbjct: 182 FSIPDESDPDDVSRQWRKLAGDTNPALGRRLNFGTVSDEHESMSAAGFARERLGWWDRGQ 241 Query: 292 EVNNFIPHN-YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV----FRRGNIIEHIF 346 ++ IP + +++ A+ A+ + G + G D+ + G +E I Sbjct: 242 SASSVIPADKWVQSAVGEAALV---GGKVFGVSFSRSG-DRVALAGAGRTDAGVHVEVID 297 Query: 347 DWSAKLI 353 S ++ Sbjct: 298 GLSGTIV 304 >gi|320198795|gb|EFW73395.1| Phage terminase, ATPase subunit [Escherichia coli EC4100B] Length = 603 Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 40/324 (12%), Positives = 79/324 (24%), Gaps = 44/324 (13%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 W E + +HC + I R +G T AW + Sbjct: 145 DTWAQEHLFEYQLHCREHKGEDWRF-----ILKSRQVGMTYYFAWEAFEDAVITGDNQVF 199 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A+ E+ + + ++ F + + +L S Sbjct: 200 FSASRSQS-------EIFREYIVQIAQNHFGVTLTGKNIRLSNGAILRFLSTNASTAQGF 252 Query: 172 TCRTYSEER-----------PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220 Y +E + + HN + F+ ++ T + +P Sbjct: 253 NGHLYGDEVFWIPKFTRLHEVASAMATHNKYRTTYFSTPSAKTHQAYPVWTGEAWRGDDP 312 Query: 221 NRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280 R + N P + W+ +EG + R Sbjct: 313 KRKGVKFPN----ESEMCQGILCPDQIWRYIITMEDAIEGGLGALVDIERLRNKYSPTAF 368 Query: 281 RIEILGQFPQQEVNNFIPHNY-----IEEAMSREAIDDLYAP-----LIMGCDIAGEGGD 330 + + QF + + ++ A + P + G D + G D Sbjct: 369 AMLYMCQFVD-SKDAVFKFSALVGCEVDRATWGDFDLTATRPFGNREVWAGFDPSRSG-D 426 Query: 331 KTVVVFR-----RGNIIEHIFDWS 349 + V G + W Sbjct: 427 NSTFVLIAPPIEDGERFRVLAVWQ 450 >gi|58040880|ref|YP_192844.1| Phage DNA packaging protein [Gluconobacter oxydans 621H] gi|58003294|gb|AAW62188.1| Phage DNA Packaging Protein [Gluconobacter oxydans 621H] Length = 435 Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 34/293 (11%), Positives = 74/293 (25%), Gaps = 53/293 (18%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK-NTLWAEVSKWLSMLPHR 138 + G GKT L ++ PG + LK + K + + Sbjct: 23 ILLRGGSRSGKTFLLVRAVVIRAVKAPGSRHGIFRHRFNALKHTIIGDTFPKVMRLC--- 79 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + + + + + + S +R + V+ + Sbjct: 80 ---------FPDLPYTLNRTDWYVTLPNGSEILFHGLDSSDRTEK---ILGLEFATVYMN 127 Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMT-----SNTRRLNGWFYDIFNIP--------- 244 EAS + + + +N + W Y +F Sbjct: 128 EASQIS----YAARNMLLTRLAQKTCLSVKEYIDANPPTTSHWLYSLFEQKIEPKSGEPL 183 Query: 245 --LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302 +D+ QI+ + S + + + + G + + I Sbjct: 184 PYPDDYATMQINPDSNRANLSPEYLAQLEALPEKER--QRFLFGNYQTAIDGALWTLDRI 241 Query: 303 EEAMS-----REAIDDLYAPLIMGCDIAG------EGGDKTVVVF----RRGN 340 R A+ +++ D +G D+ + R GN Sbjct: 242 RRLAQVTNETRAAVLADMRRIVVSVDPSGCSGNEDYKSDEIGISVCGIDRDGN 294 >gi|29374972|ref|NP_814125.1| hypothetical protein EF0333 [Enterococcus faecalis V583] gi|29342430|gb|AAO80196.1| conserved hypothetical protein TIGR01630 [Enterococcus faecalis V583] Length = 418 Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 46/281 (16%), Positives = 84/281 (29%), Gaps = 34/281 (12%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + A RG KTT A + L+ P +II + ++T + E+ ++ + +F Sbjct: 48 LLAHRGSFKTTTLAIAIALLMVLFPNKNIIFLRKTDTDV-----VEIILQVAKVLSSKYF 102 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + +L+ L E + ID+ T T T + H V D+ Sbjct: 103 KTLVFALYGVEL-VLLKETTTEIDTNLKTSTRGTSQLLGMGIYASLTGKHADIVITDDIV 161 Query: 202 GTPDIINKS--------ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253 D ++++ N +I T + + Sbjct: 162 NIKDRVSRAEREKTKLQYQELQNVKNREGRFINTGTPWHKEDAISKM-------PNVKKF 214 Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 D ID + + + + + + + F YI+ + I + Sbjct: 215 DCYETGLIDKEQRKAL--QQSMTPSLFAANYELKHIADSESLFTAPTYID---NTNLIYN 269 Query: 314 LYAPLIMGCDIAGEGGDKTVVVFR----RGNIIEHIFDWSA 350 + D A GGD T G II W Sbjct: 270 G----VAHIDAAYGGGDSTAFTIFKEQKDGTIIGFGKKWQK 306 >gi|104774537|ref|YP_619517.1| putative helicase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423618|emb|CAI98564.1| Putative helicase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 1044 Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 61/192 (31%), Gaps = 28/192 (14%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 LE +P+ +Q E ++ + + +K + A G+GKT + A+ ++ Sbjct: 314 LETSIRPYNYQQEILDRMQA------EREVYSHYKNLLVAATGVGKTVIAAFDFKRYLAE 367 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 P ++ +A+ + L+ +L + L+ H Q + S + Sbjct: 368 HPHARLLFVAHRQEILEQSLQK-FREVLNDFNFGHLLVGQYKTDDVSQLFV--------- 417 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224 S + + + DE + + + P Sbjct: 418 ---------SIQSFNSEKIADLLPSDYYDFIIIDEFHHAAAKSYQKL---LSHFKPKILL 465 Query: 225 IMTSNTRRLNGW 236 +T+ R+ G Sbjct: 466 GLTATPDRMEGQ 477 >gi|9627915|ref|NP_042313.1| terminase subunit [Lactococcus phage bIL67] gi|522258|gb|AAA74327.1| terminase subunit [Lactococcus phage bIL67] Length = 518 Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 36/292 (12%), Positives = 82/292 (28%), Gaps = 44/292 (15%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + GR K+ L+ + L + P I +A + Q + L + Sbjct: 80 VVIVGRSNAKSILDVMIALIELFLFPKPNSVIALMATKKDQAEKILMKHFRAMGN----- 134 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 Q ++ +L ++ + + + T V D Sbjct: 135 ----CQGTIINKFKNQFKLNKEQIIVKDNSILKSKGTEISIYASNEDTLDGGREQLVIID 190 Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSN----------------TRRLNGWFYDIFN 242 E +I + F T+N + + + + +F Sbjct: 191 EFGAFKKNPLITIRQGLRKNKGTLFISTTNNVIRGGAYDDELESWKEWVKDDDFSHWVFY 250 Query: 243 IPLEDWKRYQIDTR------------TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290 L+D+ + ++ T+E I F I + + + + L Sbjct: 251 YALDDYDEVKDSSKYIKANPALGYTLTLEDIQKDFIGAIGNPVKMAKIITKRFNLSM--- 307 Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDK-TVVVFRRGNI 341 + +++ + +D + +G D + G TV+ +R Sbjct: 308 TDSTTIFTKQIVDKCLV-PPLDFEGRLVAIGSDFSVRGDVWGTVIGYRENGH 358 >gi|229096952|ref|ZP_04227921.1| Prophage LambdaBa02, terminase, large subunit [Bacillus cereus Rock3-29] gi|228686562|gb|EEL40471.1| Prophage LambdaBa02, terminase, large subunit [Bacillus cereus Rock3-29] Length = 562 Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 37/323 (11%), Positives = 83/323 (25%), Gaps = 38/323 (11%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ + ++ H + I GR GKTT+ + + + ++ PG Sbjct: 80 QPWQHFVIGSLYGWVHKDTGYRRFREGLIFI--GRKNGKTTMISGLSNYAVAKDNEPGAR 137 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK-- 167 + +AN++ Q L+ E + P ++ +E K Sbjct: 138 VYVLANTKQQAGE-LFDESRAMVQKSPFLRKHLRENQKGIFHDKTHSKIEPRASDSKKLD 196 Query: 168 ---------HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--------KS 210 + + M V+ A + Sbjct: 197 GLNTHLGIFDEIHEFKNFKLINVIKKSRGARKQPMIVYITTAGYQLEGPLVQYYEIATDV 256 Query: 211 ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGII 270 + G + F + + I P + + + ++ Sbjct: 257 LEGVIDQDRKFYFMAEMDSVDEIENPELWIKANPN------MGVSLDLPSLIDDWNTDKH 310 Query: 271 SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLIMGCDIAGEGG 329 + + + + L F + +F+ ++ + + G D++ Sbjct: 311 TDAEKNDWITKQFNL--FVDNDEMSFVGIEILKRNEGVIDIKGLAGKECVAGYDLSAT-E 367 Query: 330 DKTVVV----FRRGNIIEHIFDW 348 D T GN+ W Sbjct: 368 DFTSACLEFPLDDGNVFVLSHSW 390 >gi|313124420|ref|YP_004034679.1| DNA or RNA helicase of superfamily ii [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280983|gb|ADQ61702.1| DNA or RNA helicase of superfamily II [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 1046 Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 25/192 (13%), Positives = 59/192 (30%), Gaps = 28/192 (14%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 LE +P+ +Q E ++ + ++ + A G+GKT + A+ ++ Sbjct: 316 LETSIRPYNYQQEILDRLQA------EREVYGHYRNLLVAATGVGKTVIAAFDFKRYLAE 369 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 P ++ +A+ + L+ +L + + +LL Sbjct: 370 HPHARLLFVAHRQEILEQSLQK------------------FREVLSDFNFGQLLVGQYKT 411 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224 D S + + + DE + + + P Sbjct: 412 DDVSQLFVS-IQSFNSEKMADLLPSDYYDFIIIDEFHHAAAKSYQKL---LSHFKPKILL 467 Query: 225 IMTSNTRRLNGW 236 +T+ R++G Sbjct: 468 GLTATPDRMDGQ 479 >gi|75675737|ref|YP_318158.1| phage terminase [Nitrobacter winogradskyi Nb-255] gi|74420607|gb|ABA04806.1| phage Terminase [Nitrobacter winogradskyi Nb-255] Length = 588 Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 41/371 (11%), Positives = 98/371 (26%), Gaps = 58/371 (15%) Query: 3 RLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQP---HRWQLEFM 59 + T + + ++ + F++ + + + ++ P WQ + Sbjct: 22 QRDRTSGEERGLVFDVHAAQRAIGFFRDVLTVEVEERDEYGEVSTYASPFNLQPWQAFII 81 Query: 60 EAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTRPGMSI-ICIANSE 117 ++ N F+ A + G+G GK+ L A + +++ + + A ++ Sbjct: 82 GSLF----GWKNALGFRRFRRAYVEIGKGNGKSPLAAGIGHYMLLGCRKLRAEVYSAATD 137 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177 L+ + P +L A + + + S Sbjct: 138 KDQAAILFRDAVAMWERSP--------ALRRRLKPKGANPVWELHTSRPGVNSYFKPISS 189 Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 ++ G DE PD ++ T+ N +N+ Sbjct: 190 DK-----KGKSGIRPYCALIDEVHEHPDNSVIEMMRAGTKGNQEALLFEITNSGFDKKTV 244 Query: 238 YDIFNIPL----------EDWKRYQIDTRTVEG------------------IDSGFHEGI 269 + + W + + + I F Sbjct: 245 CGQEHDMSVRILKREFENDAWFAFIANLDETDDPFEDESCWPKANPNLGVSIQPAFIREQ 304 Query: 270 ISRYGL---DSDVARIEILGQFPQQEVNNFIPHNYIEEA---MSREAIDDLYAPLIMGCD 323 + + R Q+ + + IP E+ + + + P G D Sbjct: 305 VQEAQGMPSKEGLVRRLHFCQWTESATSA-IPRKVWEDCEGDVDVDKLTADNVPCYGGLD 363 Query: 324 IAGEGGDKTVV 334 ++ D T Sbjct: 364 LSRA-RDLTAF 373 >gi|324504396|gb|ADY41899.1| ATP-dependent RNA helicase DDX20 [Ascaris suum] Length = 937 Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 27/211 (12%), Positives = 64/211 (30%), Gaps = 18/211 (8%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLI-STRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136 F + A G GKT + A M L + + R ++ IA + E++ +++ Sbjct: 57 FDMLVQAKSGTGKTLVFALMALEGLNAQRRQPQVMIIAPT---------REIAMQIAVTV 107 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 R + + + G + + I + T + H Sbjct: 108 RRLAPPVIHVGVFVGGGRSVADDIK-EIRKGVHIAVGTTGRLCQLVNDDLLPTNHVHLFV 166 Query: 197 NDEASGTPDIINKSILGFF--TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254 DEA + + + F + N + + ++ + +++ Sbjct: 167 LDEADKLMEENFQKDINFLFSSLPNNKQMAVFSATYPGDLDETLARYMKKAH---LIRLN 223 Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285 V+ + + + Y D + +L Sbjct: 224 AEDVQLLGIKQYVAM--SYSEDGPTSLHRLL 252 >gi|24374493|ref|NP_718536.1| phage terminase large subunit [Shewanella oneidensis MR-1] gi|24349075|gb|AAN55980.1|AE015735_14 conserved hypothetical protein [Shewanella oneidensis MR-1] Length = 581 Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 36/344 (10%), Positives = 87/344 (25%), Gaps = 58/344 (16%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ + ++ + F+ + +G+G GK+ L A + L+ + Sbjct: 91 DWQAFIVGSLF----GWKDADGTRRFRMCYVESGKGSGKSPLAAGIGLYGLVADGEASAE 146 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I A + Q L+ + ++ P + L + G + Sbjct: 147 IYAAATKKDQAM-VLFRDAVSMVNQSP---------------QLSSRLKKSGTGQSVWNL 190 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 + + G DE + ++ T+ M +N Sbjct: 191 AYLAKNSFFRPISSDNGQSGPRPHMALIDEVHEHKNNNVVEMMRAGTKGRKQALIFMITN 250 Query: 230 ----------------------TRRLNGWFYDIFNIPL------EDWKRYQIDTRTVEGI 261 T+ + +F I ++ ++ + + Sbjct: 251 SGHDRTSVCYSYHEYGKAICAGTKEDDSFFAFICSLDEGDDPINDESCWQKANPSLGHTF 310 Query: 262 DSGFHEG---IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318 + + R Q+ +++ + + Sbjct: 311 THKYLREQVTQAKGMPAKESIVRRLNFCQWVDSASPWLSADTWMDCEDDFDISELYGEEC 370 Query: 319 IMGCDIAGEGGDKTVVVFR--RGNIIEHIFDWSAKLIQETNQEG 360 G D++G D T + R + + W+ K + Sbjct: 371 YGGLDLSGT-RDLTALALYFPRVKTLL-VDLWTPKDTLLDRERT 412 >gi|291543425|emb|CBL16534.1| phage terminase, large subunit, PBSX family [Ruminococcus sp. 18P13] Length = 432 Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 29/259 (11%), Positives = 68/259 (26%), Gaps = 24/259 (9%) Query: 66 CHSNVNNSNPTIFKCAISAGRGIGKTTLNA-WMMLWLISTRPGMSIICIANSETQLKNTL 124 + + I A+ + GKTT + + W ++T S + T L+ + Sbjct: 18 SRRETSGYDAIICDGAVRS----GKTTAMSLGFVSWAMTTFTRQSFAICGRTVTALRRNV 73 Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184 + + L L ++ + + I + + + + Sbjct: 74 VVPLVEMLGNLGFTCIEKLS--------------KNYIDISMQGRCNRFYLFGGKDESSA 119 Query: 185 VGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244 +F DE + P + + + ++ N WFY + Sbjct: 120 ALIQGITLGGIFLDEVALMPRSFVEQAIARCSISGSRLWFNC--NPDHPYHWFYREWICK 177 Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE 304 + + + + R ILG++ P + Sbjct: 178 AAEKNALYLHFTMEDNLSLTPRIRARYRRLYAGVFYDRFILGKW-TASSGLVYP--MFRK 234 Query: 305 AMSREAIDDLYAPLIMGCD 323 + ++ CD Sbjct: 235 DTHLFTEPPACSRFVVSCD 253 >gi|227522721|ref|ZP_03952770.1| terminase large subunit [Lactobacillus hilgardii ATCC 8290] gi|227090169|gb|EEI25481.1| terminase large subunit [Lactobacillus hilgardii ATCC 8290] Length = 452 Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 37/294 (12%), Positives = 85/294 (28%), Gaps = 33/294 (11%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI----STRPGMSIIC 112 + + ++ H P GRG K++ + +L ++ ++++C Sbjct: 10 KISQVINPHFKKMWTTKRPY---VIAKGGRGSFKSSTISLKLLTMLKKQAQLGHKVNVVC 66 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 I + L+++++ ++ + ML F + + I S Sbjct: 67 IRENTVNLRDSVYGQICWAIDMLNMTDEFRYSVSPMRIT-----------HISSGSAFYF 115 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPN----RFWIMT 227 Y ++P+ + +A++ +EA+ + F + Sbjct: 116 ---YGGDKPEKLKSNTIQNVIALWYEEAANFKSAEVFDQTNPTFIRQKSPWVNDVKVFYS 172 Query: 228 SNTRR-LNGWFYDIFNIPLEDWKRYQIDTRTVEG----IDSGFHEGIISRYGLDSDVARI 282 N R W + +D + + + ++ DS I + D + + Sbjct: 173 YNPPRNPYDWINEWIAKQEQDPQCFIDTSTYLDDKLGITDSQQLTLIETYKKNDPEYYKW 232 Query: 283 EILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 LG+ N DD L D T + Sbjct: 233 LYLGK-VIGLGTNVYNMKLFHPLTEL-INDDPLVTLYYSIDAGHINSATTCLAI 284 >gi|227512497|ref|ZP_03942546.1| terminase large subunit [Lactobacillus buchneri ATCC 11577] gi|227084275|gb|EEI19587.1| terminase large subunit [Lactobacillus buchneri ATCC 11577] Length = 452 Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 37/294 (12%), Positives = 85/294 (28%), Gaps = 33/294 (11%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI----STRPGMSIIC 112 + + ++ H P GRG K++ + +L ++ ++++C Sbjct: 10 KISQVINPHFKKMWTTKRPY---VIAKGGRGSFKSSTISLKLLTMLKKQAQLGHKVNVVC 66 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 I + L+++++ ++ + ML F + + I S Sbjct: 67 IRENTVNLRDSVYGQICWAIDMLNMTDEFRYSVSPMRIT-----------HISSGSAFYF 115 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPN----RFWIMT 227 Y ++P+ + +A++ +EA+ + F + Sbjct: 116 ---YGGDKPEKLKSNTIQNVIALWYEEAANFKSAEVFDQTNPTFIRQKSPWVNDVKVFYS 172 Query: 228 SNTRR-LNGWFYDIFNIPLEDWKRYQIDTRTVEG----IDSGFHEGIISRYGLDSDVARI 282 N R W + +D + + + ++ DS I + D + + Sbjct: 173 YNPPRNPYDWINEWIAKQEQDPQCFIDTSTYLDDKLGITDSQQLTLIETYKKNDPEYYKW 232 Query: 283 EILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 LG+ N DD L D T + Sbjct: 233 LYLGK-VIGLGTNVYNMKLFHPLTEL-INDDPLVTLYYSIDAGHINSATTCLAI 284 >gi|27476053|ref|NP_775255.1| terminase [Pseudomonas phage PaP3] gi|27414483|gb|AAL85569.1| terminase [Pseudomonas phage PaP3] Length = 482 Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 72/289 (24%), Gaps = 35/289 (12%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML---------WL 101 P+ WQ +F+ A G GKT A++M W Sbjct: 28 PYGWQEKFIAASSNCAQ------------LLAMTGNRCGKTYTGAFIMACHLTGRYPEWW 75 Query: 102 ISTRPGMSIICIAN--SETQLKNTLWAEV-SKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 + + C A S ++ L +E+ W + + + + Sbjct: 76 TGRKFDKPVNCWAAGISTDTTRDILQSELLGDWKNPEAFGTGMIPKEDIVKTERREGKPG 135 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218 + + + T ++ DE DI + + T Sbjct: 136 CVQAVMVRHVSGGLSSLIFKSYEMSQDKFMGTAIDVIWLDEECP-KDIYTQCVTRTATTG 194 Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK-RYQIDTRTVEGIDSGFHEGIISRYGLDS 277 +T F L+ + + E ++S Y Sbjct: 195 G---IVYLTFTPEHGLTEIVKDFLQDLKPGQFLIHASWEDAPHLSPEVKEQLLSVYSPAE 251 Query: 278 DVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA-PLIMGCDIA 325 R E P P +EE E D I+G D+ Sbjct: 252 RRMRAEG---IPMLGSGVVFP--ILEEKFVCEPFDIPDHFHRIIGIDLG 295 >gi|85707067|ref|ZP_01038155.1| phage Terminase [Roseovarius sp. 217] gi|85668353|gb|EAQ23226.1| phage Terminase [Roseovarius sp. 217] Length = 537 Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 50/355 (14%), Positives = 101/355 (28%), Gaps = 67/355 (18%) Query: 25 VLSFKNFVMRFFPW-----GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFK 79 + + R W K L H Q WQ + + H + + + Sbjct: 15 IADPLGYGERAVTWLRRLKHPKNPALGHPFQLDPWQERIVRKIYGPRHEDGSRVVRRVVL 74 Query: 80 CAISAGRGIGKTTLNAWMMLWLISTR---PGMSIICIANSETQLKNTLWAEVSKWLSMLP 136 RG KT+L A + L + PG + A++ Q L+ E + + Sbjct: 75 ---LLPRGNRKTSLAAAITLLHLIGPERLPGGLTVSAASAREQAME-LFNEAATIIQH-- 128 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 L E + + + H V Sbjct: 129 --------DRRLSKHLSVREYVSRIAFNQIGARYVA-------VASDGKVQHGKTPNVVI 173 Query: 197 NDEASGTPD----IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI--------- 243 DE +++ ++ I T++ R ++ Sbjct: 174 ADELHAWEGRAGLRQWEALDSALVKVPGTLMIIATTSGRGQENLAWNQVEYAIKVQKGDI 233 Query: 244 -------------PLEDWKRYQIDTRTVEGIDSGFHEGI--------ISRYGLDSDVARI 282 P +DW+ + T G+ G+ + + + D Sbjct: 234 DDPATLPVIFMVEPTDDWRDEDVWYATNPGLRHGYPDIMGFRDKAQKAEHSPFERDSFLQ 293 Query: 283 EILGQFPQQEVNNFIPHNYIEEA---MSREAIDDLYAPLIMGCDIAGEGGDKTVV 334 L ++ Q + F+ + +E + + ++ + AP +G D++ + D TVV Sbjct: 294 FNLNRWLDQSTSPFVEMHTYDEGAHEVDLDEMEMVQAPCWLGVDLS-KNEDLTVV 347 >gi|294138788|ref|YP_003554766.1| helicase [Shewanella violacea DSS12] gi|293325257|dbj|BAI99987.1| helicase [Shewanella violacea DSS12] Length = 1056 Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 62/185 (33%), Gaps = 28/185 (15%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 PH+ Q+E +E + + + + I A G GKT ++A+ P I Sbjct: 323 PHQHQIEILERL------DAERNLHGRNRNLIVAATGTGKTLISAFDFKRFYQENPTAKI 376 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + IA+ E LK + E + + P+ + EL DS Sbjct: 377 LFIAHREEILKQAI--ESFRAVLKQPN----------------FGELWVGQHKPDSYDQ- 417 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 + + + + + + DE + + +F+ P +T+ Sbjct: 418 LFASIQTFNNQLDNMNLSSDYYDFIVIDEVHHVSAESYRKFISYFS---PKILLGLTATP 474 Query: 231 RRLNG 235 R +G Sbjct: 475 ERHDG 479 >gi|209972883|ref|YP_002300330.1| gp2.11 [Bacillus phage SPO1] gi|209871203|gb|ACI90959.1| gp2.11 [Bacillus phage SPO1] Length = 547 Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 24/251 (9%), Positives = 64/251 (25%), Gaps = 42/251 (16%) Query: 9 QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLE--HFSQP---HRWQLEFMEAVD 63 + ++++ L++ L + KG PL P WQ+ +E Sbjct: 3 KYTKEQIQRALINRTPTLYALRYRYI------KGNPLTFKSTKNPIKHRPWQIAILED-- 54 Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 + R +G + + +W + T P ++ + + Q+++ Sbjct: 55 ---QHPDK---------VVRKSRQLGLSEMAVTEFIWFLDTHPNVNGMYTFPRKEQMEDF 102 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 ++ P L + + + + + Sbjct: 103 SNTRIAPIFDESP----------YLSSRLDKKMNNVRLKKLVNGSAMFLRSAWGSALGE- 151 Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243 + DE D + + + S +F+ Sbjct: 152 -----GQAIDILGLDEYDRMKDGVELAFRESMKS-SAYGLMRRWSTPTIPGRGVDMLFSD 205 Query: 244 PLEDWKRYQID 254 + + ++ D Sbjct: 206 SDQRYYHHKCD 216 >gi|303255666|ref|ZP_07341713.1| terminase large subunit [Streptococcus pneumoniae BS455] gi|302597338|gb|EFL64437.1| terminase large subunit [Streptococcus pneumoniae BS455] Length = 432 Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 39/291 (13%), Positives = 83/291 (28%), Gaps = 25/291 (8%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTI--FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 Q + + + + + ++ + RG K+ A + + +++ Sbjct: 9 QNDIVVDLPKTVGAGYGQFWRSRSLYRV-VKGSRGSKKSKTTALNYVIRLLKYTWANLLV 67 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 I K + + + + L H F+ + + I Sbjct: 68 IRRYSNTNKQSTYTDFKWAANQLKVAHKFKFNES------------LPEITVKETGQKIL 115 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI-----INKSILGFFTELNPNRFWIMT 227 R +E T + + +EA + +SI G + + +T Sbjct: 116 FRGLDDELKITSITVDVGSLCWAWFEEAYQIETEDKFSTVVESIRGSLDVPDFFKQITVT 175 Query: 228 SNTRRLNGWFYDIF---NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 N W +F D + E +D + Y + ARI Sbjct: 176 FNPWNERHWLKRVFFDEETRRADTFATTTTYKCNEWLDEVDIKRYEDLYHTNPRRARIVC 235 Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335 G++ + +++ E + D L +G D G D T + Sbjct: 236 DGEW-GVAEGLIYENVTVKDFNKDELLQDSANKLCIGLDF-GFTHDPTALC 284 >gi|30348532|emb|CAC84324.1| terminase [Saimiriine herpesvirus 2] Length = 683 Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 56/177 (31%), Gaps = 16/177 (9%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GKT + ++ L+++ + + +A+ + N+++ E+ L WF + Sbjct: 218 PRRHGKTWIVVAIISMLLTSVENIHVGYVAHQKHVA-NSVFTEIINTLQK-----WFPSR 271 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + T ++ DEA+ Sbjct: 272 YIDIKKENGTIIYKSPDKKP---------STLMCATCFNKNSIRGQTFNLLYIDEANFIK 322 Query: 205 DIINKSILGFFTELNPNRFWIMTSNT-RRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 +ILGF + + +I + N+ R + +++ N + + Sbjct: 323 KDSLPAILGFMLQKDAKLIFISSVNSGDRATSFLFNLKNASEKMLNIVNYICPDHKD 379 >gi|85058702|ref|YP_454404.1| phage terminase large subunit [Sodalis glossinidius str. 'morsitans'] gi|84779222|dbj|BAE73999.1| phage terminase large subunit [Sodalis glossinidius str. 'morsitans'] Length = 582 Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 45/338 (13%), Positives = 90/338 (26%), Gaps = 59/338 (17%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTRPGMS-- 109 WQ + + NN F+ A + AG+G GK+ L A + L+ + Sbjct: 90 PWQCFIVGTLF----GWRNNEGQRRFRMAYVEAGKGSGKSPLAAGIGLYCLVADNEARAE 145 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 + A + Q L+ + + P AE +++S G + Sbjct: 146 VYAAATKKDQAM-ILFRDAVAMVDQSPK----------------LAERIQKSGGAGKEWN 188 Query: 170 TITCRTYSEERP-DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 + + RP G DE ++ T+ M + Sbjct: 189 LAFLQARAFFRPISADDGQSGPRPHCALIDEIHEHKSNQVVEMMRAGTKGRQQALIFMIT 248 Query: 229 NTR-RLNGWFYDIFNIPL---------------------------EDWKRYQIDTRTVEG 260 N+ YD + + + Sbjct: 249 NSGHNKTSVCYDYHEYGRKVAEGSIEDYSFFAFICSLDEGDDPFKDSGCWKKANPSLGHT 308 Query: 261 IDSGFHEG---IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE-EAMSREAIDDLYA 316 + + + R Q+ E +++ E S + + Sbjct: 309 FSERYLQEQVTQARGMPAKESLVRRLNFCQWVDAENPWINSDSWMACEKTSLDLASLANS 368 Query: 317 PLIMGCDIAGEGGDKTVVVFRRG-NIIEHIFDWSAKLI 353 P G D++G+ D T + + ++ W+ K Sbjct: 369 PCYGGLDLSGK-QDLTALALYWPEEKVAYVEFWTPKDT 405 >gi|9625990|ref|NP_040231.1| hypothetical protein SaHV2gp30 [Saimiriine herpesvirus 2] gi|267409|sp|Q01020|TRM3_SHV21 RecName: Full=Tripartite terminase subunit UL15 homolog; AltName: Full=DNA-packaging protein 29; AltName: Full=Terminase large subunit gi|74009|pir||QQBEM8 gene 29 protein - saimiriine herpesvirus 1 (strain 11) gi|60355|emb|CAA45657.1| unnamed protein product [Saimiriine herpesvirus 2] Length = 683 Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 56/177 (31%), Gaps = 16/177 (9%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GKT + ++ L+++ + + +A+ + N+++ E+ L WF + Sbjct: 218 PRRHGKTWIVVAIISMLLTSVENIHVGYVAHQKHVA-NSVFTEIINTLQK-----WFPSR 271 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + T ++ DEA+ Sbjct: 272 YIDIKKENGTIIYKSPDKKP---------STLMCATCFNKNSIRGQTFNLLYIDEANFIK 322 Query: 205 DIINKSILGFFTELNPNRFWIMTSNT-RRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 +ILGF + + +I + N+ R + +++ N + + Sbjct: 323 KDSLPAILGFMLQKDAKLIFISSVNSGDRATSFLFNLKNASEKMLNIVNYICPDHKD 379 >gi|131840060|ref|YP_001096069.1| ORF33 [Cyprinid herpesvirus 3] gi|106006039|gb|ABF81803.1| hypothetical protein [Cyprinid herpesvirus 3] gi|109706635|gb|ABG42861.1| ORF33 [Cyprinid herpesvirus 3] Length = 796 Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 22/153 (14%), Positives = 48/153 (31%), Gaps = 9/153 (5%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GKTT+ + ++L + + G+ I+ A ++ V ++ + WF Sbjct: 242 PRRCGKTTIVS-VVLGAMLSFMGIDIMVQAQNQNMASTI-RKNVQTFMDAYRDKTWF--- 296 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 ++S+ + T + + + DEA+ Sbjct: 297 --PDKFKYKDLTGTDKSLVYHFEPGVKDKMTTAHYLASSGNSARGQNPDICVVDEAAFVG 354 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 + S+L T + S+ + W Sbjct: 355 ANLLVSVLPLMTVKGTKQIH--ISSPGSADSWI 385 >gi|193062794|ref|ZP_03043887.1| putative conserved hypothetical protein [Escherichia coli E22] gi|192931437|gb|EDV84038.1| putative conserved hypothetical protein [Escherichia coli E22] Length = 603 Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 39/324 (12%), Positives = 78/324 (24%), Gaps = 44/324 (13%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 W E + +HC + I R +G T AW + Sbjct: 145 DTWAREHLFEYQLHCREHKGEDWRF-----ILKSRQVGMTYYFAWEAFEDAVITGDNQVF 199 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A+ E+ + + ++ F + + +L S Sbjct: 200 FSASRSQS-------EIFREYIVQIAQNHFGVTLTGKNIRLSNGAILRFLSTNASTAQGF 252 Query: 172 TCRTYSEER-----------PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220 Y +E + + HN + F+ ++ T + +P Sbjct: 253 NGHLYGDEVFWIPKFTRLHEVASAMATHNKYRTTYFSTPSAKTHQAYPVWTGEAWRGDDP 312 Query: 221 NRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280 R + P + W+ +EG + R Sbjct: 313 KRKGVAFPT----ESEMRQGILCPDQIWRYIITMEDAIEGGLGALVDIERLRNKYSPTAF 368 Query: 281 RIEILGQFPQQEVNNFIPHNY-----IEEAMSREAIDDLYAP-----LIMGCDIAGEGGD 330 + + QF + + ++ A + P + G D + G D Sbjct: 369 AMLYMCQFVD-SKDAVFKFSALVGCEVDRATWGDFDLTAARPFGNREVWAGFDPSRSG-D 426 Query: 331 KTVVVFR-----RGNIIEHIFDWS 349 + V G + W Sbjct: 427 NSTFVLIAPPIEDGERFRVLAVWQ 450 >gi|116514657|ref|YP_813563.1| superfamily II DNA/RNA helicase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093972|gb|ABJ59125.1| DNA or RNA helicase of superfamily II [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 1046 Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 62/192 (32%), Gaps = 28/192 (14%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 LE +P+ +Q E ++ + + +K + A G+GKT + A+ ++ Sbjct: 316 LETSIRPYNYQQEILDRLQA------EREVYSHYKNLLVAATGVGKTVIAAFDFKRYLAE 369 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 P ++ +A+ + L+ +L + L+ H Q + S + Sbjct: 370 HPHARLLFVAHRQEILEQSLQK-FREVLNDFNFGHLLVGQYKTDDVSQLFV--------- 419 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224 S + + + DE + + + P Sbjct: 420 ---------SIQSFNSEKIADLLPSDYYDFIIIDEFHHAAAKSYQKL---LSHFKPKILL 467 Query: 225 IMTSNTRRLNGW 236 +T+ R++G Sbjct: 468 GLTATPDRMDGQ 479 >gi|116492768|ref|YP_804503.1| Phage terminase-like protein, large subunit [Pediococcus pentosaceus ATCC 25745] gi|116102918|gb|ABJ68061.1| Phage terminase-like protein, large subunit [Pediococcus pentosaceus ATCC 25745] Length = 632 Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 47/333 (14%), Positives = 95/333 (28%), Gaps = 50/333 (15%) Query: 44 PLEHFSQPHR---WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 P +P + WQ +F+ A+ + ++ + ++S RG GKT L A + + Sbjct: 88 PNVDTGEPTKLMPWQ-KFIMAMLIGWRNDDGGKRFSRAIVSVS--RGQGKTYLMAIITAY 144 Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLS--MLPHRHWFEMQSLSLHPSGWYAELL 158 + ++N + + + + + SK L ++ + Sbjct: 145 SFLIE----SLGLSNQDYLVSSINYKQTSKILGYIKSMLAKIATIEPFKTLMQDSGLDTR 200 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFT 216 S D + + + H DE I+K + G Sbjct: 201 TLSSQSDQVVMSSNNNKLRAISHEAGQYD-SFHFTTAIFDEIGEIKTRQKISKIVSGQVK 259 Query: 217 ELNPNRFWIMTSNTRRLNGWFYDIFNIP--------------------LEDWKRYQIDTR 256 N I T+ + D I +D Sbjct: 260 VRNKQFIQISTAYPDPTVPFHDDERMIQQAMEQDYLRDADTYLGLIWSQDDLNETYKPDT 319 Query: 257 TVEGIDSGFHEGIISRY------GLDSDV-------ARIEILGQFPQQEVNNFIPHNYIE 303 V+ DSD + + L + +Q ++F+ +E Sbjct: 320 WVKSNPLLDLPSQREVLLNGLTDKRDSDALSGTLNDFQNKNLNLWLEQSTDSFLKLPDVE 379 Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 +A+ + D + +G D + D T + F Sbjct: 380 KAIVQSFSFD-DRQVYIGFDYSMF-SDNTALAF 410 >gi|301299551|ref|ZP_07205817.1| putative phage terminase, large subunit [Lactobacillus salivarius ACS-116-V-Col5a] gi|300214155|gb|ADJ78571.1| Terminase large subunit [Lactobacillus salivarius CECT 5713] gi|300852852|gb|EFK80470.1| putative phage terminase, large subunit [Lactobacillus salivarius ACS-116-V-Col5a] Length = 627 Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 44/333 (13%), Positives = 97/333 (29%), Gaps = 52/333 (15%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 ++ WQ +F+ + + + +++ RG GKT L A +M + Sbjct: 88 PNVDTGSPTELMDWQ-KFIFCMLFGWRNLEGRKRFSRAMVSVA--RGQGKTYLMAILMCY 144 Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKW--LSMLPHRHWFEMQSLSLHPSGWYAELL 158 + ++N + + + + + +K +H + + + + Sbjct: 145 SYFIE----SLGLSNQDYLVSSINFKQTNKIFGYIKTMMKHIVKTDMFKDYAATVGFKAQ 200 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFT 216 M + K+ + ++ + D+F H DE + I+K I G Sbjct: 201 NDQMIMKEKNNVLRAISHESGQYDSF------HFTTAIFDEIGEVKSREKISKIISGQVK 254 Query: 217 ELNPNRFWIMTSNTRRLNGWFYD-------IFNIPLEDWKRYQIDTRTVEGIDSGFHEGI 269 N I TS + D + D + + +D F Sbjct: 255 VPNHQFIQISTSYPDPSVPFHEDQKMIQQAMEQDYKRDADNFLGLIWAQDSLDETFKPET 314 Query: 270 I--------------------------SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303 + + + L + + N+F+ + IE Sbjct: 315 WYKSNPLLYLDSQKQVLMEGLQDKRDADMLSGNVADFQNKNLNLWLAEATNSFLKLSDIE 374 Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 A+ + +G D + D T + F Sbjct: 375 RAIQPNFNI-EGRTVYIGYDYSMF-SDNTAIAF 405 >gi|188585871|ref|YP_001917416.1| conserved hypothetical protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350558|gb|ACB84828.1| conserved hypothetical protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 530 Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 49/434 (11%), Positives = 115/434 (26%), Gaps = 125/434 (28%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 M S+ +KL++ L+ ++A+ NF+ G + PL + Sbjct: 1 MAVKTSSKKKLDKVLNNFELYAK------NFMKVVDITGEE-VPLT------------LN 41 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + + N++ N R +G TTL+ ++L TR ++ + ++ + Sbjct: 42 EEQRYLYRNMDKYN------ICLKSRQLGITTLSCAYSVYLACTRKNVTSMIVSYNLEST 95 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 + + ++ + +P + +++ + +E Sbjct: 96 QEI-FNKLKSIYNSIPDDE---------RIKPKELRNNRYELLLENGSKVLVKTAGYKEL 145 Query: 181 PDTFVGPHNTHGMAVFNDEASGTPD-----IINKSILGFFTELNPNRFWIMTSNTRRLNG 235 E + + + P + I+ +T Sbjct: 146 S------RGLTLSFAHLSEYAFWNEWVQTKGLMGLEQSLMKSDEPGKGQIIIESTANGLN 199 Query: 236 WFYDIFNIPLE---DWKRYQIDTRTVE-------GIDSGFHEGI---------------- 269 FY++F + +K + + + I +++ I Sbjct: 200 KFYELFKSAEKGNSKYKPFFFNWIDNKKQFASEYDIAEKWYKSINKGNRLTTKDLTDETS 259 Query: 270 -----ISRYGLDSDVARI---------EILGQFPQQEVNNFIPH-------NYIEEAMSR 308 L + R E ++P FI I + + Sbjct: 260 KKLYYEKGANLKQIMWRYWKLQDMTEEEFCQEYPSHSEQAFISSQKSIFDTEMIVKRLDN 319 Query: 309 EAIDDLYAPLI--------------------------MGCDIA-GEGGDKTVVVF--RRG 339 L G D+A G G D + ++ + G Sbjct: 320 LLPPLPKEELADLPSKLKKYLNNGLDIYNRPKRERHFAGVDVASGSGADYSSIIVLNKDG 379 Query: 340 NIIEHIFDWSAKLI 353 E + + + Sbjct: 380 ---EQVASFYRNDV 390 >gi|262163925|ref|ZP_06031664.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus VM223] gi|262027453|gb|EEY46119.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus VM223] Length = 416 Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 40/318 (12%), Positives = 81/318 (25%), Gaps = 50/318 (15%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 + FS+P + Q E + SA G GKT A L Sbjct: 16 EAIEEMGFSRPTQVQAEAIPQALDG------------RDVLASAPTGTGKTAAFAIPALQ 63 Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 + P I+ + + AE ++ L+ + F + + Sbjct: 64 YLLDFPRRKAGPARILILTPTRELAMQV--AEQAQALAKNTRLNIFTITGGVQYQEHADI 121 Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 Q + + + DEA D+ + Sbjct: 122 LATTQDI--------VVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173 Query: 216 TELNPNRFWIMTSNTRRLN------------GWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + R + + + P + K+ + + Sbjct: 174 SAECRWRKQTLLFSATLEGRGVEGFTADLLKNPAHIDAEPPRRERKKISQWYHRADDMPH 233 Query: 264 --GFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP-- 317 + I++ S V E L + IP +I+ M ++ ++ Sbjct: 234 KVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMQQDRRNNAITRFR 293 Query: 318 -----LIMGCDIAGEGGD 330 +++ D+A G D Sbjct: 294 EGSVNILLATDVAARGID 311 >gi|265763445|ref|ZP_06092013.1| PBSX family phage terminase, large subunit [Bacteroides sp. 2_1_16] gi|299145861|ref|ZP_07038929.1| putative phage terminase, large subunit, PBSX family [Bacteroides sp. 3_1_23] gi|263256053|gb|EEZ27399.1| PBSX family phage terminase, large subunit [Bacteroides sp. 2_1_16] gi|298516352|gb|EFI40233.1| putative phage terminase, large subunit, PBSX family [Bacteroides sp. 3_1_23] Length = 525 Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 30/249 (12%), Positives = 59/249 (23%), Gaps = 25/249 (10%) Query: 90 KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLH 149 K+ L + ++ P + + + LK + W + K + Sbjct: 80 KSYLGSCWLVSSCMRFPDIRAVVARKTLKSLKGSTWNTIKKVCKEWGLKEGVN------- 132 Query: 150 PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209 + L+ + + I F ++ F DE S + + Sbjct: 133 ---YKINNLDGILTFWNDSVIIMQEMVDLPSDPNFERFGSSEYTIAFIDEVSEISERAIE 189 Query: 210 SILGFFTELNPNRFWIMT--SNTRRLNGWFYDIFNIP--------LEDWKRYQIDTRTVE 259 + F +T W F E Sbjct: 190 VLFSRLRWRTAETFKTARMMMSTNPCINWVRSRFVQDDEGNPVLCKEGEAYVPFSVFDNP 249 Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN---NFIPHNYIEEAMS--REAIDDL 314 I D + G + + N + + + + RE + D Sbjct: 250 DIQFVQTYVAALNKITDRATRERLLYGNWDFVDSNLMAAYWNFDGEKHLIERLREKVYDP 309 Query: 315 YAPLIMGCD 323 P+I G D Sbjct: 310 MKPIISGWD 318 >gi|308094637|ref|ZP_05891088.2| putative phage terminase, large subunit [Vibrio parahaemolyticus AN-5034] gi|308091007|gb|EFO40702.1| putative phage terminase, large subunit [Vibrio parahaemolyticus AN-5034] Length = 528 Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 44/340 (12%), Positives = 95/340 (27%), Gaps = 37/340 (10%) Query: 22 AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81 A+ V+ F F+ KGK + WQ + ++ + + Sbjct: 19 AQRVIDFYKFIKHT-----KGKLARTVMKLMPWQQFCVGSIIGWVYKDTGFRRFKQANIW 73 Query: 82 ISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 ++ R GK+TL + + L+ + G I IA + Q K ++ + + LSM + Sbjct: 74 VA--RKNGKSTLASGLALYFLIGDGETGAEIYSIAVKKDQAK-IVFDDAVRMLSMSELKE 130 Query: 140 WFEMQSLSL-----HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF-----VGPHN 189 ++ S+ S+ + H I +S + + + Sbjct: 131 VLTVKRDSIAFEAEFAKFVPLASDSNSLDGLNTHCFIADELHSWKDRNLWGVMETSTGAR 190 Query: 190 THGMAVFNDEAS----GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL 245 MA A G + + + D + Sbjct: 191 EQPMAFSISTAGWILDGIGKELFDDGVTILENYGLEENVFTM-------NYTLDDGDKFN 243 Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV---ARIEILGQFPQQEVNNFIPHNYI 302 + + + + E + + S + L + ++ + + Sbjct: 244 DRNCWIKANPCLGVSVKEEDIERLCRKAERMSSERANFLTKRLNVWVNNAE-AWLNLDKL 302 Query: 303 EEAMSREAIDD--LYAPLIMGCDIAGEGGDKTVVVFRRGN 340 + A + I+G D A +V N Sbjct: 303 YQCADENARLEDFEGRDCIIGVDFADYLDLTSVCYLFVNN 342 >gi|256374744|ref|YP_003098404.1| type III restriction protein res subunit [Actinosynnema mirum DSM 43827] gi|255919047|gb|ACU34558.1| type III restriction protein res subunit [Actinosynnema mirum DSM 43827] Length = 525 Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 66/241 (27%), Gaps = 21/241 (8%) Query: 1 MPRLISTDQKLEQ----ELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQL 56 + + + D + ++++ E F+ PL Sbjct: 64 LAKRLDADTSGPKNVLNAVNDLTWTIEQRRELLEFLGFTIDRAPTRTPLFRQD------A 117 Query: 57 EFMEAVDVHCHSNVNNSNPTIF----KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 E + + H I+ + + G+GKT ++ + R ++ Sbjct: 118 EPLYGLFPHQRRAAARIKELIYDGPRRAVLHLPTGVGKTRTGMNLICDHLRDREPTLVVW 177 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 +A+ +L AE S L +R + + + + + Sbjct: 178 LAH-GQELLEQAAAEFEHAWSQLGNRP---VSVVRMWGNAPTTLDDVADGVVILGLEK-- 231 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232 + ++ P+ + DEA + ++ T +T+ R Sbjct: 232 AVSAAKGSPEFLHTLASRS-SLTVFDEAHQIIAPTFQRVVDALTIRPDASLLGLTATPGR 290 Query: 233 L 233 Sbjct: 291 T 291 >gi|227496997|ref|ZP_03927248.1| phage Terminase [Actinomyces urogenitalis DSM 15434] gi|226833491|gb|EEH65874.1| phage Terminase [Actinomyces urogenitalis DSM 15434] Length = 480 Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 27/296 (9%), Positives = 65/296 (21%), Gaps = 43/296 (14%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 WQ ++ + + + +S R GK + ++ ++ + Sbjct: 45 DDWQAMVLDDWLATGPDGLWAHS----RAGLSVPRQNGKNAILEAREVYGMTMLHEA-FL 99 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A+ + + + A + E + + Sbjct: 100 HTAHEVKTARKAFLRLLGYF-------------DNPRKYPDLAAMVKEIRRTNGQEAIVL 146 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF-FTELNPNRFWIMTSNT 230 T E + + DEA D +++ N I T Sbjct: 147 TGGGQIEFVARSKNSARGFTVDIIVLDEAQDLTDEALEALRSTNAAGPQANPQIIYTGTP 206 Query: 231 RRLNGW--------------------FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGII 270 +++ P D + + Sbjct: 207 PSPKNDGEVFTRFRSGALSGTTASTCWHEWSAAPDADLDDETTIAQANPAYQIRLSAKTV 266 Query: 271 SRYGLD--SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI 324 + D + E LG + + + I + + L + D+ Sbjct: 267 ADEREDISEEGFARERLGMWDEVSTSAVIDQATWLRCADMASQVN--DRLALAVDV 320 >gi|289423849|ref|ZP_06425642.1| putative phage terminase, large subunit [Peptostreptococcus anaerobius 653-L] gi|289155626|gb|EFD04298.1| putative phage terminase, large subunit [Peptostreptococcus anaerobius 653-L] Length = 593 Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 41/288 (14%), Positives = 79/288 (27%), Gaps = 42/288 (14%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGM--SIICIANSETQLKNTLWAEVSKWLS-MLPHR 138 I R GK+ L + R I C A + Q N +W E++K++ Sbjct: 110 IQIARQNGKSFLAGVEGNAWATFRGYKLGKIYCAATKQDQA-NIVWDELAKFIRSDKWLD 168 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV--- 195 ++++ + +++G D+K S + + + Sbjct: 169 KMYKIREHDRIIKSYVTGTEIKAIGRDTKSADGFRSVLSIVDEYHAHPNSKMYQLLLDGQ 228 Query: 196 ---------FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246 A +I G + I+ + + + Y + Sbjct: 229 INVKSALTLIITTAGF-------TIGGACHKKYLLCKKILEGIVTKDSQFIYICEMDKDD 281 Query: 247 D-WKRYQIDTRTVE----GIDSGFHEGIISRYGLDSDVAR------------IEILGQFP 289 D W +T D E +I + S A+ E+ Sbjct: 282 DIWDPVNW-AKTSPLRLWNEDDTLDEEMIDKIREKSITAKETGGNELVNFLTKELNCWVT 340 Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFR 337 ++ R D I+G D++ GGD T + Sbjct: 341 NAGDQLLDNKKLLKCRSKRTLGDFKGRECILGIDLS-SGGDLTSIALI 387 >gi|120602517|ref|YP_966917.1| hypothetical protein Dvul_1472 [Desulfovibrio vulgaris DP4] gi|120562746|gb|ABM28490.1| protein of unknown function DUF264 [Desulfovibrio vulgaris DP4] Length = 599 Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 40/341 (11%), Positives = 76/341 (22%), Gaps = 67/341 (19%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P +Q + + + + + + A R IG T A I Sbjct: 148 PALFQEKLHARYFDY-QRQLRAALTHRNRMLLKA-RQIGATWYFAQEAFENACLTGDNQI 205 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 A +V + M F++ ++ + ++ + Sbjct: 206 FLSATKAQS-------QVFRNYIMQIAGEAFDIT-------LSGNPMVLHTAHGKAELHF 251 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTS 228 ++ + S H V+ DE + K G R T Sbjct: 252 LSNSSRSA------QSYHGH----VYIDEFFWITKFKELFKVATGMAAHKRWRRTLFSTP 301 Query: 229 N-------TRRLNGWFYDIFNIPLEDWKRYQI---------------DTRTVEGIDSGFH 266 + F F+ P + E Sbjct: 302 SAITHEAYPLWSGETFQRRFSKPRPWPDTEAMRAGVLCPDTYFRNIITLADAEAGGCDLF 361 Query: 267 EGIISRYGLDSDVARIEILGQFPQQEVNNF---------IPHNYIEEAMSREAIDDLYAP 317 + + + R +F F + ++ + P Sbjct: 362 DVAQLKLEYTPEEFRQLFGCEFIDDTQGVFRLAQLEACMVDPADWQDVRQGDPHPVGNLP 421 Query: 318 LIMGCDIAGEGGDKTVVVF-----RRGNIIEHI--FDWSAK 351 + G D A G D + R G I I W + Sbjct: 422 VWGGYDPARSGDDAS-FAVLLPDLRDGGGIRCIERHKWKGR 461 >gi|322374796|ref|ZP_08049310.1| putative helicase [Streptococcus sp. C300] gi|321280296|gb|EFX57335.1| putative helicase [Streptococcus sp. C300] Length = 881 Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 25/196 (12%), Positives = 59/196 (30%), Gaps = 30/196 (15%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 ++Q + ++ + + ++A G GKTT+ + R G + Sbjct: 15 RQYQKQVLDRFQDYQADGHVH--------LVAAP-GSGKTTIG-----IELIARFGNPAL 60 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + + E +W+ + + Q LS S E+ ++ ++ Sbjct: 61 ILVPT------VTIRE--QWVDRIQTAFLEDCQRLSDLVSQNLKEMKVLTIVTYQAFHSA 112 Query: 172 TCRTYSEERPDTFVG--------PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223 + S+E + + DE + KS+ F + P + Sbjct: 113 MNQLQSQEDGEAEDFVGFDLLASLRAQKVATLCLDECHHLRNEWWKSLEAFRKQYGPLKL 172 Query: 224 WIMTSNTRRLNGWFYD 239 +T+ + Sbjct: 173 ISLTATPPYDSDPELW 188 >gi|221148414|gb|ACL99813.1| BDRF1 [Human herpesvirus 4] Length = 690 Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 29/189 (15%), Positives = 54/189 (28%), Gaps = 15/189 (7%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GKT + ++ ++S + I +A+ + ++ E+ L+ E+ Sbjct: 227 PRRHGKTWIVVAIISLILSNLSNVQIGYVAHQKHVAS-AVFTEIIDTLTKSFDSKRVEVN 285 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 S I S TC +F DEA+ Sbjct: 286 ------KETSTITFRHSGKISSTVMCATCF--------NKNSIRGQTFHLLFVDEANFIK 331 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264 +ILGF + + +I + N+ F E D Sbjct: 332 KEALPAILGFMLQKDAKIIFISSVNSADQATSFLYKLKDAQERLLNVVSYVCQEHRQDFD 391 Query: 265 FHEGIISRY 273 + ++S Sbjct: 392 MQDSMVSCP 400 >gi|123845631|sp|Q3KSR3|TRM3_EBVG RecName: Full=Tripartite terminase subunit UL15 homolog; AltName: Full=DNA-packaging protein BGRF1/BDRF1; AltName: Full=Terminase large subunit gi|64173286|gb|AAY41136.1| probable DNA packaging protein [Human herpesvirus 4] Length = 690 Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 29/189 (15%), Positives = 54/189 (28%), Gaps = 15/189 (7%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GKT + ++ ++S + I +A+ + ++ E+ L+ E+ Sbjct: 227 PRRHGKTWIVVAIISLILSNLSNVQIGYVAHQKHVAS-AVFTEIIDTLTKSFDSKRVEVN 285 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 S I S TC +F DEA+ Sbjct: 286 ------KETSTITFRHSGKISSTVMCATCF--------NKNSIRGQTFHLLFVDEANFIK 331 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264 +ILGF + + +I + N+ F E D Sbjct: 332 KEALPAILGFMLQKDAKIIFISSVNSADQATSFLYKLKDAQERLLNVVSYVCQEHRQDFD 391 Query: 265 FHEGIISRY 273 + ++S Sbjct: 392 MQDSMVSCP 400 >gi|82503246|ref|YP_401690.1| BGRF1/BDRF1 [Human herpesvirus 4] gi|139424519|ref|YP_001129485.1| BGRF1/BDRF1 [Human herpesvirus 4 type 2] gi|267408|sp|P03219|TRM3_EBVB9 RecName: Full=Tripartite terminase subunit UL15 homolog; AltName: Full=DNA-packaging protein BGRF1/BDRF1; AltName: Full=Terminase large subunit gi|254784086|sp|P0C744|TRM3_EBVA8 RecName: Full=Tripartite terminase subunit UL15 homolog; AltName: Full=DNA-packaging protein BGRF1/BDRF1; AltName: Full=Terminase large subunit gi|1632798|emb|CAA24834.1| probable DNA packaging protein [Human herpesvirus 4] gi|23893636|emb|CAD53440.1| BGRF1-BDRF1 protein [Human herpesvirus 4] gi|82703995|gb|ABB89264.1| BGRF1/BDRF1 [Human herpesvirus 4] Length = 690 Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 29/189 (15%), Positives = 54/189 (28%), Gaps = 15/189 (7%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GKT + ++ ++S + I +A+ + ++ E+ L+ E+ Sbjct: 227 PRRHGKTWIVVAIISLILSNLSNVQIGYVAHQKHVAS-AVFTEIIDTLTKSFDSKRVEVN 285 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 S I S TC +F DEA+ Sbjct: 286 ------KETSTITFRHSGKISSTVMCATCF--------NKNSIRGQTFHLLFVDEANFIK 331 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264 +ILGF + + +I + N+ F E D Sbjct: 332 KEALPAILGFMLQKDAKIIFISSVNSADQATSFLYKLKDAQERLLNVVSYVCQEHRQDFD 391 Query: 265 FHEGIISRY 273 + ++S Sbjct: 392 MQDSMVSCP 400 >gi|262047916|ref|ZP_06020862.1| terminase large subunit [Lactobacillus crispatus MV-3A-US] gi|260571794|gb|EEX28369.1| terminase large subunit [Lactobacillus crispatus MV-3A-US] Length = 644 Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 51/358 (14%), Positives = 97/358 (27%), Gaps = 46/358 (12%) Query: 34 RFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93 F I L WQ + ++ +N IS GRG GKT + Sbjct: 93 FKFASIIPDVDLHKPLPLMDWQKFILAMINGWKDANGERRYTD---IHISVGRGQGKTQI 149 Query: 94 NAW----MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF-------- 141 +L + AN+ Q L+ V K L + F Sbjct: 150 AGIQMCKAVLIDTLNFTNKDFLITANTSDQ-STKLFGYVKKMLEAVIKIEPFASIAKESG 208 Query: 142 -EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 ++Q+ + ++ + S D T +E T + +A Sbjct: 209 LDLQTNQIIEKETNNKVWKISYEADKYDSTHNVLAIYDETGALDTYDRMTDIT---DGQA 265 Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSN--------TRRLNGWFYDIFNIPLEDWKRYQ 252 P I + + + +R + ++ D Sbjct: 266 QVIPYHQFIKISSAYPDPTSPFHQEQITMQHIMEKDYSREGDNSLCLVWAQDDLDETFKP 325 Query: 253 IDTRTVEGIDSGFHEGIISR-----YGLDSDV-------ARIEILGQFPQQEVNNFIPHN 300 + E R D + + + L + +Q +++ Sbjct: 326 ETWEKSNPLIGLSDEERKRRTDNLIKQRDQGMLTNTLHKFQNKNLNLWLKQSTASYLNLK 385 Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF-RRGNIIEHIFDWSAKLIQETN 357 +E+A++ + D MG D + D T V F E + W + + + Sbjct: 386 DVEKAINDDFKID-GLICYMGFDYSMF-SDNTAVGFAFPYTTPEGMHKWQ---MMQHS 438 >gi|157377633|ref|YP_001476233.1| type III restriction enzyme, res subunit [Shewanella sediminis HAW-EB3] gi|157320007|gb|ABV39105.1| type III restriction enzyme, res subunit [Shewanella sediminis HAW-EB3] Length = 1052 Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 63/185 (34%), Gaps = 28/185 (15%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 PH+ Q+E ++ + + + + I A G GKT ++A+ P I Sbjct: 319 PHQHQIEILDRL------DAERNIHDRNRNLIVAATGTGKTLISAFDFKRFYQNNPTAKI 372 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + IA+ E LK + E + + P+ + EL DS + Sbjct: 373 LFIAHREEILKQAI--ESYRAVLKQPN----------------FGELWVGQHKPDS-YNQ 413 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 + S + ++ + + DE + + F+ P +T+ Sbjct: 414 LFASIQSFNNQIDNINLNSDYYDFIVIDEVHHVSADSYRKFINHFS---PTILLGLTATP 470 Query: 231 RRLNG 235 R +G Sbjct: 471 ERHDG 475 >gi|330940119|gb|EGH43292.1| putative phage terminase large subunit [Pseudomonas syringae pv. pisi str. 1704B] Length = 495 Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 45/333 (13%), Positives = 84/333 (25%), Gaps = 77/333 (23%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + I R +G TTL + L + IA++ K ++ LP Sbjct: 48 RNIILKARQLGFTTLVCIVQL-DAALFESAKCALIAHTLNDAKRLFREKIKYAYDNLPK- 105 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + + + + ++ T H Sbjct: 106 --------EIRAANPASNDAAGELVFSKGGSLYVSTSFRG---GTLRYLH--------VS 146 Query: 199 EASGT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-------- 246 E P + + G F + + F + S G+F+D + Sbjct: 147 EFGKICAKFPHKAREIVTGAFEAVAADCFVTIESTAEGRAGYFFDYSQSAEKQQMSGVPL 206 Query: 247 ---DWKRYQIDTRTVE-------------GIDSGFHEGIISRYGLDSDVARI------EI 284 DWK + + + F+E + R + Sbjct: 207 GKLDWKFFFFSWWRNPLYWLDPTDVIIPDRLTNYFNELQAKHGIATNPGQRAWYSAKEKT 266 Query: 285 LGQ-------------FPQQEVNNFIPHNY--IEEAMSREAIDD-LYAPLIMGCDIAGEG 328 LG F Q + + + A + D + P+ DI Sbjct: 267 LGDDMKREYPSIPAEAFQQSVEGAYYAKQFAKLYGAQRIGVLPDNSHQPVHTFWDIGV-- 324 Query: 329 GDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGC 361 GD T + F R ++ + + EG Sbjct: 325 GDSTSIWFVR----MVGEEYHVIDFYQNSGEGL 353 >gi|228960169|ref|ZP_04121827.1| Prophage LambdaBa02, terminase, large subunit [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799519|gb|EEM46478.1| Prophage LambdaBa02, terminase, large subunit [Bacillus thuringiensis serovar pakistani str. T13001] Length = 524 Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 33/307 (10%), Positives = 78/307 (25%), Gaps = 34/307 (11%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ + ++ H + I GR GKTT+ + + + ++ PG Sbjct: 42 QPWQHFVIGSLYGWIHKDTGYRRFREGLIFI--GRKNGKTTMISGLSNYAVAKDNEPGAR 99 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK-- 167 + +AN++ Q L+ E + P ++ +E K Sbjct: 100 VYVLANTKQQAGE-LFDESRAMVQKSPFLRKHLRENQKGIFHDKTHSKIEPRASDSKKLD 158 Query: 168 ---------HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--------KS 210 + + M V+ A + Sbjct: 159 GLNTHLGIFDEIHEFKNFKLINVIKKSRGARKQPMIVYITTAGYQLEGPLVQYYEIATDV 218 Query: 211 ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGII 270 + G + F + + I P + + + ++ Sbjct: 219 LEGVIDQDRKFYFMAEMDSVDEIENPELWIKANPN------MGVSLDLPSLIDDWNTDKH 272 Query: 271 SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLIMGCDIAGEGG 329 + + + + F + +F+ ++ + + G D++ Sbjct: 273 TDAEKNDWITKQF--NIFVDNDEMSFVGIEILKRNEEVIDIKGLAGKECVAGYDLSAT-E 329 Query: 330 DKTVVVF 336 D T Sbjct: 330 DFTSACL 336 >gi|300811800|ref|ZP_07092271.1| helicase C-terminal domain protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497216|gb|EFK32267.1| helicase C-terminal domain protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 1046 Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 61/192 (31%), Gaps = 28/192 (14%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 LE +P+ +Q E ++ + +K + A G+GKT + A+ ++ Sbjct: 316 LETSIRPYNYQQEILDRLQA------EREVYGHYKNLLVAATGVGKTVIAAFDFKRYLAE 369 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 P ++ +A+ + L+ +L + L+ H Q + S + Sbjct: 370 HPHARLLFVAHRQEILEQSLQK-FREVLNDFNFGHLLVGQYKTDDVSQLFV--------- 419 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224 S + + + DE + + + P Sbjct: 420 ---------SIQSFNSEKMADLLPSDYYDFIIIDEFHHAAAKSYQKL---LSHFKPKILL 467 Query: 225 IMTSNTRRLNGW 236 +T+ R++G Sbjct: 468 GLTATPDRMDGQ 479 >gi|260577761|ref|ZP_05845696.1| hypothetical protein HMPREF0297_0275 [Corynebacterium jeikeium ATCC 43734] gi|258604156|gb|EEW17398.1| hypothetical protein HMPREF0297_0275 [Corynebacterium jeikeium ATCC 43734] Length = 517 Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 30/229 (13%), Positives = 63/229 (27%), Gaps = 27/229 (11%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ E + + + +S R GK + + L I I+ Sbjct: 42 PWQEELLRD----SLLQTDEGMWASREVVVSLARQNGKGEVLVALELVAIYLCGAERIMH 97 Query: 113 IAN---SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 A+ + ++ LW + +++ W+E + + P + ++ +K Sbjct: 98 SAHFLDTAMDARDRLWDVIEANPALM---EWWEDEHPGVSPRPVMGNG-KDAIKFPNKAK 153 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 R T + DE P+ + ++ T+ PN + S+ Sbjct: 154 IY-------YRTRTKKTGRGLSFDWLIFDECFDLPNEVYAAMNNT-TKARPNAQKVFISS 205 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278 F+ +G D + D Sbjct: 206 PVNTREHFHGAIFSAKR--------WAASDGSDGMLFKEWCREPDDDPF 246 >gi|298376478|ref|ZP_06986433.1| terminase large subunit [Bacteroides sp. 3_1_19] gi|298266356|gb|EFI08014.1| terminase large subunit [Bacteroides sp. 3_1_19] Length = 481 Score = 50.7 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 38/298 (12%), Positives = 83/298 (27%), Gaps = 48/298 (16%) Query: 58 FMEAVDVHCHSNVNNS-NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII--CIA 114 F++ V + + I + A+S GK+ +++ + W++ P S++ C + Sbjct: 46 FLKKVADAFTRVYESYVSGVIRRLAVSMPPRAGKSYISSLFISWMLGHFPEESVMRNCCS 105 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 ++ L N L + + + F L R Sbjct: 106 DT---LYNKLSYDTRDIVRSSRFKEIF------------PDIQLRGDKQNVHGWSLEAAR 150 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW---------- 224 S + D + KS+ ++ N + W Sbjct: 151 QVSYFGAGVGGTVIGFGASML------AMTDDLYKSLEDALSDTNNEKVWSWKQGTHDSR 204 Query: 225 -------IMTSNTRRLNGWFYDIFNIPL-EDWKRYQI----DTRTVEGIDSGFHEGIISR 272 I + + ++ R D E + + + + Sbjct: 205 IEGNCCSIDIGTRWSATDVLGRMEEMGKYDEIIRIAALDENDCSFCEDVHTTEYYHELRE 264 Query: 273 YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGD 330 DS + E + + P + + P + + + +I D+A EG D Sbjct: 265 ETDDS-IWCAEYMQE-PIEAIGLLFPKSELNRFKLADIEGKQPDGVIGATDVADEGDD 320 >gi|27452870|gb|AAO12374.1| cleavage/packaging protein [Porcine lymphotropic herpesvirus 2] Length = 683 Score = 50.7 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 55/170 (32%), Gaps = 16/170 (9%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAI-SAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 + + K ++ R GKT + ++ L+++ + I +A+ Sbjct: 190 DIFKVYFDLSDMIPERMEVFKQKASVFLIPRRHGKTWIVVAIISILLTSIEDLHIGYVAH 249 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 + + NT++ E+ L+ + E++ L + S TC Sbjct: 250 QKH-VSNTVFTEIINTLNRFFPSKYIEVK------KDNGTILFKADGKKPSTLMCATCF- 301 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225 ++ DEA+ +ILGF + + +I Sbjct: 302 -------NKNSIRGQTFNLLYIDEANFIKKDALPTILGFMLQKDAKLIFI 344 >gi|170732639|ref|YP_001764586.1| terminase [Burkholderia cenocepacia MC0-3] gi|169815881|gb|ACA90464.1| Terminase [Burkholderia cenocepacia MC0-3] Length = 521 Score = 50.7 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 46/347 (13%), Positives = 86/347 (24%), Gaps = 66/347 (19%) Query: 16 HEMLMHAECVLS----FKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVN 71 + L E F V+ G PL+ WQ E + Sbjct: 9 ADGLWFDEAAADRAVRFFETVLTHTKGEWAGTPLKLSD----WQAE---NIIRPLFGWKR 61 Query: 72 NSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEV 128 ++ A I R GK+TL+A + L+L+ PG I A Q ++ Sbjct: 62 ADGTRRYRTAYIQIPRKAGKSTLSAGIALYLLYADGEPGAEIYSAAADRDQAS-IVFEMA 120 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188 + P A + H Sbjct: 121 KGMIDAAPALRKRAQTFKRAVVVSSSASSYKV-------------------LSADAYTKH 161 Query: 189 NTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI---- 243 + + DE P+ + + +T+ + Y++++ Sbjct: 162 GLNAHGIIFDELHAQPNRDLWDVLTTSTGARRQPLTVAITTAGYDRHSICYELYDYACKV 221 Query: 244 ------------------PLEDWKRYQIDTRTVEGIDSGFHEGIISRY-------GLDSD 278 +DWK + G+ E + + Sbjct: 222 RDGIIDDPSFLPCIYEAGADDDWKSPATWRKAHPGLGVSVKEEYFEQEAAKAAAIPAYEN 281 Query: 279 VARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325 R +L Q+ +Q +I + + + G D+A Sbjct: 282 TFRQLLLNQWTEQA-CRWISMDTWDSCAGELPDLTDHV-CYAGLDLA 326 >gi|294851955|ref|ZP_06792628.1| conserved hypothetical protein [Brucella sp. NVSL 07-0026] gi|294820544|gb|EFG37543.1| conserved hypothetical protein [Brucella sp. NVSL 07-0026] Length = 264 Score = 50.7 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 25/214 (11%), Positives = 49/214 (22%), Gaps = 31/214 (14%) Query: 56 LEFMEAVDVHCHSNVNNSNPTI--FKCA-ISAGRGIGKTTLNAWMMLWLISTRPG----- 107 + + A D + P ++ I GRG GKT A + + P Sbjct: 6 RQILAAQDEWLIRARDAQLPPDGDWRVWLIMGGRGSGKTRAGAEWVSGMALGLPPFAGKP 65 Query: 108 -MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 I + + + + S LS+ ++ Sbjct: 66 SGHIALVGETFNDAREVMVDGPSGILSVSRL-VRPRYEASRRRL---------------- 108 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFW 224 + + A + DE + P + + R Sbjct: 109 --IWDNGAVATLFSSEDPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPR-Q 165 Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 ++T+ R D + R Sbjct: 166 VVTTTPRGAASQGAFDGQDCFHDAYAHSGKCRQS 199 >gi|269203619|ref|YP_003282888.1| putative phage terminase, large subunit [Staphylococcus aureus subsp. aureus ED98] gi|262075909|gb|ACY11882.1| putative phage terminase, large subunit [Staphylococcus aureus subsp. aureus ED98] Length = 563 Score = 50.7 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 49/349 (14%), Positives = 90/349 (25%), Gaps = 62/349 (17%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTR--PGM 108 WQ + ++ H F+ A I GR GKTT + + + +S G Sbjct: 81 QPWQHFIIGSLFGWVHKETKLR---RFREALIFMGRKNGKTTTISGVANYGVSQDGENGA 137 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 I +AN Q + L+ E + P L + D Sbjct: 138 EIHLLANVMKQAR-ILFDESKAMIKASPILSR-------------EFRPLRDEIHYDKTI 183 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMT 227 I + ++ D DE D + I +T Sbjct: 184 SKIMPQASDSDKLDGLNTHMG------IFDEIHEFKDYKLISVIKNSRAARLQPLLIYIT 237 Query: 228 SNTRRLNGWFYDIFNIPLE--------------------------DWKRYQIDTRTVEGI 261 + +L+G D+ + + + + I Sbjct: 238 TAGYQLDGPLVDMVEMGRDILDGVIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSI 297 Query: 262 DSGFHEGIISRYGLDSDV---ARIEILGQFPQQEVNNFIPHNYIEEAMSR-EAIDDLYAP 317 D + + + F + +FI + +++ + P Sbjct: 298 DLEEMKEEWKKAKRTPAERGDFITKRFNIFANNDEMSFIDYPTLQKNNETVSLEELEGRP 357 Query: 318 LIMGCDIAGEGGDKTV----VVFRRGNIIEHIFDWSAKLIQETNQEGCP 362 +G D++ D T G + W K E + E P Sbjct: 358 CTIGYDLSET-EDFTAACATFALDNGKVAVLSHSWIPKHKVEYSNEKIP 405 >gi|20453820|gb|AAM22132.1|AF478169_25 cleavage/packaging protein [porcine lymphotropic herpesvirus 1] Length = 683 Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 55/170 (32%), Gaps = 16/170 (9%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAI-SAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 + + K ++ R GKT + ++ L+++ + I +A+ Sbjct: 190 DIFKVYFDLSDMIPERMEVFKQKASVFLIPRRHGKTWIVVAIISILLTSIEDLHIGYVAH 249 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 + + NT++ E+ L+ + E++ L + S TC Sbjct: 250 QKH-VSNTVFTEIINTLNRFFPSKYIEIK------KDNGTILFKADGKKPSTLMCATCF- 301 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225 ++ DEA+ +ILGF + + +I Sbjct: 302 -------NKNSIRGQTFNLLYIDEANFIKKDALPTILGFMLQKDAKLIFI 344 >gi|72384751|gb|AAZ67667.1| phage D3 terminase-like protein [Haemophilus parasuis 29755] Length = 556 Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 36/313 (11%), Positives = 69/313 (22%), Gaps = 52/313 (16%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ+ + + + ++ R K+T+ A + W + G I Sbjct: 71 DWQIFLFANLLGFKYRDSGLRKYRSAYVQVA--RKNAKSTIGAILANWFLVMEKGQQDIY 128 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 A ++ + + L ++ K Sbjct: 129 TAAVSRDQARIVF-------------------DDAKKMAMLSKPLSKRLTIQQHKMLYPQ 169 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT----S 228 + T+ DE PD S L P S Sbjct: 170 KNSLMRPLASKSSTIEGTNPSLAIVDEYHLHPDNSVYSALELGQGARPEGLLFAITTAGS 229 Query: 229 NTRRLNGWFYDIF-----------------------NIPLEDWKRYQIDTRTVEGIDSGF 265 NT YD + + + + + + I Sbjct: 230 NTISACKQHYDYCCQILDGTEKNESIFILIYELDDESEVDDPTQWIKANPNIGKSIPYKD 289 Query: 266 HEGIISRYGLDSDVARIEILGQF---PQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGC 322 E I++ + +F N+ + E MG Sbjct: 290 FENTITKARGIPSEWVEMLTKRFNVWCNGSTPWLGEGNWKACGRNYEEERLHGKACYMGL 349 Query: 323 DIAGEGGDKTVVV 335 D++ D T + Sbjct: 350 DLSST-NDITSLC 361 >gi|157325367|ref|YP_001468786.1| TerL [Listeria phage P35] gi|66733372|gb|AAY53187.1| TerL [Listeria phage P35] Length = 440 Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 36/279 (12%), Positives = 73/279 (26%), Gaps = 22/279 (7%) Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 + + H N + GRG GK++ A M++ I P + + + Sbjct: 25 LMSPAFHNIYQRVLDNTAPSHVWMKGGRGSGKSSFVALMVVDEIMKDPQANAVIFRKVDE 84 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 ++ TL + + L + + E + S+ Sbjct: 85 GMRTTLLPQYQWAIDQLGVSGAWRTSLQPMMLLYKNPETGLEQQIRFKGVKDPKRVKASK 144 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 R ++E + G + N + G + Sbjct: 145 FRVGYAKYLIYEEADEYESEEDFSIVNSSYMRGEGT---GDSRA--FYLYNPPKYKGHWL 199 Query: 239 DIFNIPLEDWKRYQIDTRT--------VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290 + + + D + T E + S + E + + E LG+ Sbjct: 200 NNWVDVIRDEPSQYVHHSTFIPIALHHPEWLGSTWLESARLVRDKNPNRYEWEFLGRNVN 259 Query: 291 QEVNNF-------IPHNYIEEAMSREAIDDLY--APLIM 320 F I + I+ E D+ Y P + Sbjct: 260 TGNEVFPNAVQEHITFDMIDGLRPYEGFDEGYTADPSVW 298 >gi|152978902|ref|YP_001344531.1| phage terminase [Actinobacillus succinogenes 130Z] gi|150840625|gb|ABR74596.1| phage Terminase [Actinobacillus succinogenes 130Z] Length = 567 Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 37/321 (11%), Positives = 86/321 (26%), Gaps = 59/321 (18%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFK-CAISAGRGIGKTTLNAWMMLWLISTR--PGM 108 WQ + AV ++ ++ R GK+ ++A + L++ G Sbjct: 80 EPWQ---LFAVANAFGWLKKSNGLRRYREVYTEIPRKNGKSAISAGVGLYMFCIDGEFGA 136 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 + A +E Q + L + + E+ ++ + Sbjct: 137 EVYSGATTEKQAWEVFRP------------ARLMCKKTELLCTTFGVEVNASNLNRPADG 184 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPNRFWIMT 227 S P DE D + ++L WI+T Sbjct: 185 --------SRFEPLIGNPGDGASPSCAIVDEYHEHKDDELYTTMLTGMGARRQPLMWIIT 236 Query: 228 SNTRRLNGWFYDIFN----------------------IPLEDWKRYQIDTRTVEGIDSGF 265 + + G YD +DW + + D Sbjct: 237 TAGYNIEGPCYDKRREVIEMLNGAVPNDELFGLIYTIDEGDDWTSSDVLRKANPNFDVSV 296 Query: 266 HEGIISRYGLDS-------DVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD--LYA 316 + + + + + + L + + + F ++ E+ + Sbjct: 297 YGDYLLSQQKQAINNPRFANKFKTKHLNVWVSAKESYFNMVSW-EKCYDETLSLEDFQGE 355 Query: 317 PLIMGCDIAGEGGDKTVVVFR 337 +++G D+A + ++V Sbjct: 356 EVVLGLDMARKLDMNSLVRVF 376 >gi|253583089|ref|ZP_04860297.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251834981|gb|EES63534.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 492 Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 40/293 (13%), Positives = 81/293 (27%), Gaps = 32/293 (10%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK--TTLNAWMMLWLISTRPGM 108 P +Q++ M+A P + + A+SA RG+GK T L M+ + + G Sbjct: 10 PRNFQIKVMKA-----------FLPEMSRVAVSASRGMGKDITGLACADMI--CNLKKGA 56 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 ++ + S LK L+ K + +S + + + + + Sbjct: 57 NVGYLGTSLKALKKILFVNDDKTGRPMFQTVINTESLVSTRTGEYLHKDMS-NFQYKNGS 115 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 + T T A+ E++ K + G N I T Sbjct: 116 KILLLGTDQ-------NNELGTSLDALIVTESARFSRDKWKFLRGNVDRANGRILEISTP 168 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTR-----TVEGIDSGFHEGIISRYGLDSDVARIE 283 D + + + + + D E Sbjct: 169 FFASEFNELLDGNLEVSKTYTMILVPATEGFNADGTRVYDDAKLEWLKTQY-DEATFLQE 227 Query: 284 ILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIM-GCDIAGEGGDKTVVV 335 + + + H+ + + Y + D+ D TV+ Sbjct: 228 YMVSTKAMNNDAVLGHSLKKAKRLDVFSNVGYDRELWFSFDLGQ--SDYTVMF 278 >gi|145514241|ref|XP_001443031.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124410392|emb|CAK75634.1| unnamed protein product [Paramecium tetraurelia] Length = 2116 Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 27/188 (14%), Positives = 54/188 (28%), Gaps = 18/188 (9%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 I A G GKT + + ML + P I+ IA + K L W L + Sbjct: 1349 NILIGAPTGSGKTIMAEFAMLRVFKQSPQFKIVYIAPLKAIAKERL----LDWTKRLKNI 1404 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + ++ + A L + + + R+++ + + D Sbjct: 1405 NKNVLELTGDYTPDLQALLKAHVLITTPEKWDGISRSWN-------NREYVKQTCLLIFD 1457 Query: 199 EASGTPDIINKSILGFFT-------ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY 251 E + + + + N I S + F + + + Sbjct: 1458 EIHLLGQERGQVLEVIVSRMNSLSYDTNKKTRMIGLSTAMANGLDVSNWFGVKKGRFYNF 1517 Query: 252 QIDTRTVE 259 + R V Sbjct: 1518 KPSCRPVP 1525 >gi|207270776|ref|YP_002261418.1| gp2 [Listeria phage P40] gi|204307991|gb|ACI00362.1| gp2 [Listeria phage P40] Length = 430 Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 33/303 (10%), Positives = 79/303 (26%), Gaps = 28/303 (9%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 + + + GRG K++ ++ I P + + Sbjct: 17 AFYDLHDQIQAGTTPD-----NIWLEGGRGSTKSSFAFIEIIDGIMRDPLANAVVYRKVA 71 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177 L+NT + + + +L +++ L + E ++ + T S Sbjct: 72 DTLRNTTYEQCKWAMDILGVTPLWKLNVNPLRMTYPNPETGQEQRILFQGADKATNTKGS 131 Query: 178 EERPDTFVG-PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236 + DE + G + N + G Sbjct: 132 MFSYGVCKYLIYEEAEQFSNADEMETITVSWLRGDYG-----DIKPLVFYCYNPPKFRGH 186 Query: 237 FYDIF-----NIPLE--DWKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQF 288 + + + P + + + + F ++ L+ + R LG+ Sbjct: 187 WLNKHVVSLRHSPNDLVHHSTFVAVANSHPEWLGEAFLRRALALKKLNPNRYRHVFLGED 246 Query: 289 PQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKT----VVVFRRGNIIEH 344 F Y + + + G D G D + V R+ + + Sbjct: 247 VMTGNEVFPNLEY----RPIDPSEYHHLTPHEGFD-EGYTTDPSVWLQVYYDRKRDTLYI 301 Query: 345 IFD 347 + + Sbjct: 302 VKE 304 >gi|53802296|ref|YP_113003.1| ATP-dependent DNA helicase UvrD [Methylococcus capsulatus str. Bath] gi|53756057|gb|AAU90348.1| ATP-dependent DNA helicase, UvrD/REP family [Methylococcus capsulatus str. Bath] Length = 1469 Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 35/275 (12%), Positives = 70/275 (25%), Gaps = 20/275 (7%) Query: 25 VLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISA 84 L F+ ++ P K L + P W +E++ + + + A Sbjct: 816 RLDRDAFLRQWLPGREK--ELSRQTTPESW-RNIVESLQNPAQQRIVADDREQTNVLVLA 872 Query: 85 GRGIGKTTLNAWMMLWLISTRP--GMSIICIANSETQLKNT------LWAEVSKWLSMLP 136 G G GKT + + +LI R I+ +A + L + ++ +++L Sbjct: 873 GPGSGKTRVLVHRIAYLIRVRRENPRGILALAYNRHAAAEIRKRLAGLIGDDARGITVLT 932 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMG-IDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 + W E + + E D + Sbjct: 933 CHALAMRLAGVSFAERWEKTGDEVFQEVLRQAIALLKGEGLPPEEADEQRDRLLAGYRWI 992 Query: 196 FNDEASGTPDIINKSILG----FFTELNPNRFWIMTSNTRRL----NGWFYDIFNIPLED 247 DE + I + + + + + NG + D Sbjct: 993 LVDEYQDIGPDQYELISALAGRTLQDEDSRLNLLAVGDDDQNIYAFNGASVEFIRRFEAD 1052 Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI 282 + S E G D + Sbjct: 1053 YAAKPAYLTENYRSTSRIIEAANRLIGDAPDRMKQ 1087 >gi|260880948|ref|ZP_05403222.2| conserved hypothetical protein [Mitsuokella multacida DSM 20544] gi|260850003|gb|EEX70010.1| conserved hypothetical protein [Mitsuokella multacida DSM 20544] Length = 546 Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 41/368 (11%), Positives = 94/368 (25%), Gaps = 69/368 (18%) Query: 22 AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81 F+ F + ++F+ P W F + + + N K Sbjct: 20 DRAAHDFQFFCEYYL--------ADYFTSP--WSEAFHKWLIHKYEDIIFNHKDEQNKVC 69 Query: 82 ISAGRGIGKTTLNA-WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP---- 136 +S+ RG K+TL++ +LW I+ I+ + K + + + P Sbjct: 70 VSSPRGHAKSTLSSFAFVLWCALYGYKKFIVIISATAIVAKQFILN-IRDAIEFNPLIKR 128 Query: 137 ----HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY--------SEERPDTF 184 ++ S L + + + R S+E D+ Sbjct: 129 DFGSLKNDSLWNSQELLLRTGAYIICKGANAQLRGLQFGGTRPDLALLDDMESQEEVDSP 188 Query: 185 VGPHNTH--------GMAVFNDEASGTPD--IINKSILGFFTEL---------------- 218 + M + +A N + TE Sbjct: 189 TQVDSLEHWLTADVIPMLSVDGDAIFIGTVLSYNSVLWRLLTEARFASWERKRFQAVIEF 248 Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV-----EGIDSGFHEGIISRY 273 +P+ W + + + + ++ + + ++ + Sbjct: 249 SPSNLWAEWESIMTDLSRGDNAYREAKNFYNEHKEEMLDGAKVLWPDQRKDQYLYLMEKR 308 Query: 274 GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY-APLIMGCDIA----GEG 328 + E P E ++E + + + D A Sbjct: 309 LESEESFASEYQND-PMTENLRVFKTEWLENNY---YEETPDIKEVNIALDPAVSTSRT- 363 Query: 329 GDKTVVVF 336 D +V++ Sbjct: 364 ADYSVILV 371 >gi|289976633|gb|ADD21678.1| DNA maturase B [Caulobacter phage Cd1] Length = 602 Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 31/260 (11%), Positives = 71/260 (27%), Gaps = 29/260 (11%) Query: 38 WGIKGKPLEHFSQPHRWQLEFMEAVDVHC-------HSNVNNSNPTIFK-CAISAGRGIG 89 W G H+ H +F++ H ++ + A RG Sbjct: 14 WEQVGLLQRHYESFH----DFLDDAFEHLGFSASWVQHDIGGFLAHGPNSLMVQAQRGQA 69 Query: 90 KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLH 149 KTT+ A +W + P ++ ++ TQ + K L + + + Sbjct: 70 KTTITAAFAVWTLIHNPKARVLILSAGGTQANEIS-TLIVKLLLTMDELECLRPDASNGD 128 Query: 150 PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-------ASG 202 + A + ++ K ++ C + + D+ A+ Sbjct: 129 RTSVEAFDIHYTLKGVDKSPSVACSGITG-------NLQGKRADLLIADDIESAKNSATA 181 Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD--IFNIPLEDWKRYQIDTRTVEG 260 ++ FT + I + ++ + + W +E Sbjct: 182 MMREFIMNLTRDFTSICTEGRIIYLGTPQSMDSIYNSLPGRGFAIRIWPGRYPTPEQLEN 241 Query: 261 IDSGFHEGIISRYGLDSDVA 280 I R ++ + Sbjct: 242 YGDMLAPAIRRRLAMNPALC 261 >gi|294848480|ref|ZP_06789226.1| phage terminase [Staphylococcus aureus A9754] gi|294824506|gb|EFG40929.1| phage terminase [Staphylococcus aureus A9754] Length = 566 Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 54/378 (14%), Positives = 99/378 (26%), Gaps = 63/378 (16%) Query: 22 AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81 E F+ F KG + QP WQ + ++ H + Sbjct: 57 EELAHRPIRFIE-KFCKPSKGSKRQLVLQP--WQHFIIGSLFGWVHK--ETKLRRFKEAL 111 Query: 82 ISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 I GR GKTT + + + +S G I +AN Q + L+ E + P Sbjct: 112 IFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKASP--- 167 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 +L + + + + + + + DE Sbjct: 168 ----------------KLDKNFRTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDE 211 Query: 200 ASGTPD-IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT- 257 D + I +T+ +L+G D+ + + D RT Sbjct: 212 IHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVDMVEAGRDTLDQIIEDERTF 271 Query: 258 --------------------------VEGIDSGFHEGIISRYGLDSDV--ARIEILGQFP 289 V E ++ + F Sbjct: 272 YYLASLDDDDDINDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFA 331 Query: 290 QQEVNNFIPHNYIEEAMSR-EAIDDLYAPLIMGCDIAGEGGDKTV----VVFRRGNIIEH 344 + +FI + +++ + P +G D++ D T G + Sbjct: 332 NNDEMSFIDYPTLQKNNEIVSLEELEGRPCTIGYDLSET-EDFTAACATFALDNGKVAVL 390 Query: 345 IFDWSAKLIQETNQEGCP 362 W K E + E P Sbjct: 391 SHSWIPKHKVEYSNEKIP 408 >gi|66395661|ref|YP_240002.1| ORF005 [Staphylococcus phage 47] gi|87162180|ref|YP_494101.1| phiSLT ORF 563-like protein, terminase, large subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|156603994|ref|YP_001429940.1| putative terminase large subunit [Staphylococcus phage tp310-2] gi|161509682|ref|YP_001575341.1| terminase large subunit [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|62636085|gb|AAX91196.1| ORF005 [Staphylococcus phage 47] gi|87128154|gb|ABD22668.1| phiSLT ORF 563-like protein, terminase, large subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|154818080|gb|ABS87507.1| putative terminase large subunit [Staphylococcus phage tp310-2] gi|160368491|gb|ABX29462.1| terminase large subunit [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|302333121|gb|ADL23314.1| phage terminase large subunit [Staphylococcus aureus subsp. aureus JKD6159] gi|315197734|gb|EFU28068.1| terminase large subunit [Staphylococcus aureus subsp. aureus CGS01] gi|320140397|gb|EFW32252.1| hypothetical protein HMPREF9528_01293 [Staphylococcus aureus subsp. aureus MRSA131] gi|320142759|gb|EFW34562.1| hypothetical protein HMPREF9529_01859 [Staphylococcus aureus subsp. aureus MRSA177] Length = 563 Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 54/378 (14%), Positives = 99/378 (26%), Gaps = 63/378 (16%) Query: 22 AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81 E F+ F KG + QP WQ + ++ H + Sbjct: 54 EELAHRPIRFIE-KFCKPSKGSKRQLVLQP--WQHFIIGSLFGWVHK--ETKLRRFKEAL 108 Query: 82 ISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 I GR GKTT + + + +S G I +AN Q + L+ E + P Sbjct: 109 IFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKASP--- 164 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 +L + + + + + + + DE Sbjct: 165 ----------------KLDKNFRTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDE 208 Query: 200 ASGTPD-IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT- 257 D + I +T+ +L+G D+ + + D RT Sbjct: 209 IHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVDMVEAGRDTLDQIIEDERTF 268 Query: 258 --------------------------VEGIDSGFHEGIISRYGLDSDV--ARIEILGQFP 289 V E ++ + F Sbjct: 269 YYLASLDDDDDINDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFA 328 Query: 290 QQEVNNFIPHNYIEEAMSR-EAIDDLYAPLIMGCDIAGEGGDKTV----VVFRRGNIIEH 344 + +FI + +++ + P +G D++ D T G + Sbjct: 329 NNDEMSFIDYPTLQKNNEIVSLEELEGRPCTIGYDLSET-EDFTAACATFALDNGKVAVL 387 Query: 345 IFDWSAKLIQETNQEGCP 362 W K E + E P Sbjct: 388 SHSWIPKHKVEYSNEKIP 405 >gi|262049872|ref|ZP_06022734.1| prophage L54a, terminase, large subunit, putative [Staphylococcus aureus D30] gi|259162021|gb|EEW46601.1| prophage L54a, terminase, large subunit, putative [Staphylococcus aureus D30] gi|315128432|gb|EFT84440.1| phage Terminase [Staphylococcus aureus subsp. aureus CGS03] Length = 563 Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 54/378 (14%), Positives = 99/378 (26%), Gaps = 63/378 (16%) Query: 22 AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81 E F+ F KG + QP WQ + ++ H + Sbjct: 54 EELAHRPIRFIE-KFCKPSKGSKRQLVLQP--WQHFIIGSLFGWVHK--ETKLRRFKEAL 108 Query: 82 ISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 I GR GKTT + + + +S G I +AN Q + L+ E + P Sbjct: 109 IFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKASP--- 164 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 +L + + + + + + + DE Sbjct: 165 ----------------KLDKNFRTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDE 208 Query: 200 ASGTPD-IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT- 257 D + I +T+ +L+G D+ + + D RT Sbjct: 209 IHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVDMVEAGRDTLDQIIEDERTF 268 Query: 258 --------------------------VEGIDSGFHEGIISRYGLDSDV--ARIEILGQFP 289 V E ++ + F Sbjct: 269 YYLASLDDDDDINDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFA 328 Query: 290 QQEVNNFIPHNYIEEAMSR-EAIDDLYAPLIMGCDIAGEGGDKTV----VVFRRGNIIEH 344 + +FI + +++ + P +G D++ D T G + Sbjct: 329 NNDEMSFIDYPTLQKNNEIVSLEELEGRPCTIGYDLSET-EDFTAACATFALDNGKVAVL 387 Query: 345 IFDWSAKLIQETNQEGCP 362 W K E + E P Sbjct: 388 SHSWIPKHKVEYSNEKIP 405 >gi|257428234|ref|ZP_05604632.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus 65-1322] gi|257275075|gb|EEV06562.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus 65-1322] Length = 566 Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 54/378 (14%), Positives = 99/378 (26%), Gaps = 63/378 (16%) Query: 22 AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81 E F+ F KG + QP WQ + ++ H + Sbjct: 57 EELAHRPIRFIE-KFCKPSKGSKRQLVLQP--WQHFIIGSLFGWVHK--ETKLRRFKEAL 111 Query: 82 ISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 I GR GKTT + + + +S G I +AN Q + L+ E + P Sbjct: 112 IFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKASP--- 167 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 +L + + + + + + + DE Sbjct: 168 ----------------KLDKNFRTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDE 211 Query: 200 ASGTPD-IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT- 257 D + I +T+ +L+G D+ + + D RT Sbjct: 212 IHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVDMVEAGRDTLDQIIEDERTF 271 Query: 258 --------------------------VEGIDSGFHEGIISRYGLDSDV--ARIEILGQFP 289 V E ++ + F Sbjct: 272 YYLASLDDDDDINDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFA 331 Query: 290 QQEVNNFIPHNYIEEAMSR-EAIDDLYAPLIMGCDIAGEGGDKTV----VVFRRGNIIEH 344 + +FI + +++ + P +G D++ D T G + Sbjct: 332 NNDEMSFIDYPTLQKNNEIVSLEELEGRPCTIGYDLSET-EDFTAACATFALDNGKVAVL 390 Query: 345 IFDWSAKLIQETNQEGCP 362 W K E + E P Sbjct: 391 SHSWIPKHKVEYSNEKIP 408 >gi|262401641|ref|ZP_06078207.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC586] gi|262352058|gb|EEZ01188.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC586] Length = 416 Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 41/318 (12%), Positives = 78/318 (24%), Gaps = 50/318 (15%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 + FS+P + Q E + SA G GKT A L Sbjct: 16 EAIEEMGFSRPTQVQAEAIPQALDG------------RDVLASAPTGTGKTAAFAIPALQ 63 Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 + P I+ + + AE ++ L+ + F + + Sbjct: 64 YLLDFPRRKPGPARILILTPTRELAMQV--AEQAQALAKNTRLNIFTITGGVQYQEHADI 121 Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 Q + + + DEA D+ + Sbjct: 122 LATTQDI--------VVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173 Query: 216 TELNPNRFWIMTSNTRRLN------------GWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + R + + + P + K+ + + Sbjct: 174 STECRWRKQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPH 233 Query: 264 --GFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AID 312 + I++ S V E L + IP +I E R Sbjct: 234 KVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFR 293 Query: 313 DLYAPLIMGCDIAGEGGD 330 + +++ D+A G D Sbjct: 294 EGDVNILLATDVAARGID 311 >gi|262155805|ref|ZP_06028928.1| putative phage terminase [Vibrio cholerae INDRE 91/1] gi|262030396|gb|EEY49037.1| putative phage terminase [Vibrio cholerae INDRE 91/1] Length = 586 Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 40/350 (11%), Positives = 90/350 (25%), Gaps = 63/350 (18%) Query: 22 AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81 A+ V+ F F+ KGK + WQ + ++ + + Sbjct: 77 AQRVIDFYKFIRHT-----KGKLARTVMKLMPWQQFCVGSIVGWVYKDTGFRRFKQANIW 131 Query: 82 ISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 ++ R GK+TL + + L+ + G I IA + Q K ++ + + LSM + Sbjct: 132 VA--RKNGKSTLASGLGLYFLIADGEVGAEIYSIAVKKDQAK-IVFDDAVRMLSMSELKE 188 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 ++ S+ +A+ + + DE Sbjct: 189 ILTVKRDSITFDAEFAKFVPL--------------------ASDSNSLDGLNTHCFIADE 228 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTR---------------------------R 232 D ++ T S Sbjct: 229 LHSWKDRNLWGVMETSTGAREQPLAFSISTAGWILDGIGKELFDDGCTILENYGLEENVF 288 Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL---DSDVARIEILGQFP 289 + D + + + + + E + + + + L + Sbjct: 289 TMNYTLDDGDKFNDRTCWIKANPCLGVSVKEEDIERLCRKAERMASERANFLTKRLNVWV 348 Query: 290 QQEVNNFIPHNYIEEAMSREAIDD--LYAPLIMGCDIAGEGGDKTVVVFR 337 ++ + + + A + I+G D A +V Sbjct: 349 NNAE-AWLNLDKLYKCADPNARLEDFEGRDCIIGVDFADYLDLTSVCYLF 397 >gi|297565631|ref|YP_003684603.1| hypothetical protein Mesil_1197 [Meiothermus silvanus DSM 9946] gi|296850080|gb|ADH63095.1| hypothetical protein Mesil_1197 [Meiothermus silvanus DSM 9946] Length = 434 Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 66/265 (24%), Gaps = 22/265 (8%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS--MLPH 137 + AG GKT+ + I + I + L+ L E K +L Sbjct: 35 VLVLAGTQGGKTSFGPLWLYREIQRKGPGDYIVATPTFPLLELKLLPEFRKLFEQHLLLG 94 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 R+ + + + G D + + A + Sbjct: 95 RYVGSPSKKFVFSPEGFERTFGRRPGPDDAPVQVFF-----GHAQDPDSLESATAKAAWL 149 Query: 198 DEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE----DWKRY 251 DEA ++IL + ++ + T GW + P D + Sbjct: 150 DEAGQKKFRRDSWQAILRRLSIHQGR---VLITTTPYYLGWLKADLHDPARQGHPDIELV 206 Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311 + +E + + G F + E + Sbjct: 207 NFKSVDNPNFPRAEYERARATLPR--WKFDMFYNGLFTRPA-GQIYDCFDPEVHVRPAFN 263 Query: 312 DDLYAPLIMGCDIAGEGGDKTVVVF 336 P +G D GG T V Sbjct: 264 VPEDWPRFIGLD---FGGVNTAAVK 285 >gi|315145947|gb|EFT89963.1| conserved hypothetical protein [Enterococcus faecalis TX2141] Length = 577 Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 41/374 (10%), Positives = 88/374 (23%), Gaps = 71/374 (18%) Query: 6 STDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVH 65 ST + Q L K + + W +WQ + Sbjct: 64 STGEWSGQPLELEDWQ-------KFYFSNIYGWQKWS---------DKWQRNVRVIRKSY 107 Query: 66 CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNT 123 N GK+ + +L+ + G C+A Q +N Sbjct: 108 LQVPKKN----------------GKSLMEGAPILYGMYGEGVKGAQFYCLAADFDQAQNV 151 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR--------- 174 + + + + E + ++ R Sbjct: 152 ANPLATVIENDNDLLDGTRVYRKEKKVTTISYAFFEDDFKYQNNLRVLSKREKVDGKNTY 211 Query: 175 -TYSEERPDTFVGPHNT----------HGMAVFNDEASG----TPDIINKSILGFFTELN 219 ++E + + + A I + E N Sbjct: 212 IVVADEVHEWEDTSRYDGLKSGQAAQPEPLFLVCSTAGKNSGALGVQIYQDSKHILEEDN 271 Query: 220 PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279 + ++IM + W + + + + + F + + + + Sbjct: 272 DDDWFIMIYEPNKGYNWEDEKVWEMV---NPNLYVSFDITFLRGEFKDALRNPFRK--AE 326 Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFR-- 337 + L F N + I+ + + D + +G D++ D T V Sbjct: 327 FLSKHLNVFVNYAEN-YFDKEQIDNCLVDDLGDITGEQVTIGIDLSRT-TDLTCVSINIP 384 Query: 338 ----RGNIIEHIFD 347 G I I Sbjct: 385 TFNDEGESIIKIKQ 398 >gi|229008925|ref|ZP_04166279.1| phage terminase, large subunit [Bacillus mycoides Rock1-4] gi|228752362|gb|EEM02036.1| phage terminase, large subunit [Bacillus mycoides Rock1-4] Length = 522 Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 38/335 (11%), Positives = 91/335 (27%), Gaps = 50/335 (14%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTR--PGM 108 WQ + + N + + + A + + GKT + +++ + G Sbjct: 24 ESWQKFYFANIYGWQKYNEDGKAVRVIRTAYLQVPKKNGKTIMGGSPVIYAMYGEGVKGA 83 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 AN+ Q +N ++ + P + + ++ + D Sbjct: 84 DCYISANTFEQCQNAAGP-IALTIENSPD---LRPDTRIYKGKEDTIKSIKYTFVEDDIK 139 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNRFWIMT 227 Y + +++ + + DE + ++ I+T Sbjct: 140 YANVIKVLTKDNAGNE----GKNPYINYFDEVHAQMDREQYDNLRSAQIAQEEPLN-IIT 194 Query: 228 SNTRRLNG---------------------WFYDIFNIPLE-DWKRYQIDTRTVEGIDSGF 265 S + G WF I+ + DW+ + +D Sbjct: 195 STAGKNTGSLGTQIYTYAKEVLDKDKDDSWFMMIYEPNKKFDWENRDVWRMVNPNMDVSV 254 Query: 266 HEGIISRYGLD-------SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318 + + + + L F + + +++ + D Sbjct: 255 NMEFLENAFKEAQNNSFNKAEFLSKHLDVFVNYAET-YFDKDQLDKMLVDYLKDVEGLTC 313 Query: 319 IMGCDIAGEGGDKTVVVFR------RGNIIEHIFD 347 ++G D++ D T V GN I + Sbjct: 314 VIGVDLSRR-TDLTCVSINVPTYDEEGNAILIVKQ 347 >gi|215401146|ref|YP_002332401.1| putative terminase large subunit [Staphylococcus phage phiSauS-IPLA35] gi|215260497|gb|ACJ64627.1| gp38 [Staphylococcus phage phiSauS-IPLA35] Length = 566 Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 54/378 (14%), Positives = 99/378 (26%), Gaps = 63/378 (16%) Query: 22 AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81 E F+ F KG + QP WQ + ++ H + Sbjct: 57 EELAHRPIRFIE-KFCKPSKGSKRQLVLQP--WQHFIIGSLFGWVHK--ETKLRRFKEAL 111 Query: 82 ISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 I GR GKTT + + + +S G I +AN Q + L+ E + P Sbjct: 112 IFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKASP--- 167 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 +L + + + + + + + DE Sbjct: 168 ----------------KLDKNFRTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDE 211 Query: 200 ASGTPD-IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT- 257 D + I +T+ +L+G D+ + + D RT Sbjct: 212 IHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVDMVEAGRDTLDQIIEDERTF 271 Query: 258 --------------------------VEGIDSGFHEGIISRYGLDSDV--ARIEILGQFP 289 V E ++ + F Sbjct: 272 YYLASLDDDDDINDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFA 331 Query: 290 QQEVNNFIPHNYIEEAMSR-EAIDDLYAPLIMGCDIAGEGGDKTV----VVFRRGNIIEH 344 + +FI + +++ + P +G D++ D T G + Sbjct: 332 NNDEMSFIDYPTLQKNNEIVSLEELEGRPCTIGYDLSET-EDFTAACATFALDNGKVAVL 390 Query: 345 IFDWSAKLIQETNQEGCP 362 W K E + E P Sbjct: 391 SHSWIPKHKVEYSNEKIP 408 >gi|209966369|ref|YP_002299284.1| hypothetical protein RC1_3107 [Rhodospirillum centenum SW] gi|209959835|gb|ACJ00472.1| conserved hypothetical protein [Rhodospirillum centenum SW] Length = 511 Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 24/171 (14%), Positives = 45/171 (26%), Gaps = 24/171 (14%) Query: 28 FKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRG 87 F W L+ P LE + ++ + + A R Sbjct: 3 PVRFTEFLALWNH----LQGRGTPDL-HLEMADWLEDALARG-------RRELLLLAFRD 50 Query: 88 IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147 GK+++ W ++ P I+ +A T K + V + + P + + Sbjct: 51 SGKSSIVGLYCAWRLARDPDCRILVLAADLTLAKKMV-RTVKRVVERHPLCAGLKPEKRE 109 Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 L + + R S +H V D Sbjct: 110 LWGAEAFTLQRPL-----------VGRDPSMAAQGVGGNFTGSHADLVVCD 149 >gi|229104554|ref|ZP_04235220.1| Prophage LambdaBa02, terminase, large subunit [Bacillus cereus Rock3-28] gi|228678890|gb|EEL33101.1| Prophage LambdaBa02, terminase, large subunit [Bacillus cereus Rock3-28] Length = 562 Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 33/307 (10%), Positives = 77/307 (25%), Gaps = 34/307 (11%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ + ++ H + I GR GKTT+ + + + ++ PG Sbjct: 80 QPWQHFVIGSLYGWVHKDTGYRRFREGLIFI--GRKNGKTTMISGLSNYAVAKDNEPGAR 137 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK-- 167 + +AN++ Q L+ E + P ++ +E K Sbjct: 138 VYVLANTKQQAGE-LFDESRAMVQKSPLLRKHLRENQKGIFHDKTHSKIEPRASDSKKLD 196 Query: 168 ---------HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--------KS 210 + + M V+ A + Sbjct: 197 GLNTHLGIFDEIHEFKNFKLINVIKKSRGARKQPMIVYITTAGYQLEGPLVQYYEIATDV 256 Query: 211 ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGII 270 + G + F + + I P + + + ++ Sbjct: 257 LEGVIDQDRKFYFMAEMDSVDEIENPELWIKANPN------MGVSLDLPSLIDDWNTDKH 310 Query: 271 SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLIMGCDIAGEGG 329 + + + F + +F+ ++ + + G D++ Sbjct: 311 TDAEKYDWITKQF--NIFVDNDEMSFVGIEILKRNEEVIDIKGLAGKECVAGYDLSAT-E 367 Query: 330 DKTVVVF 336 D T Sbjct: 368 DFTSACL 374 >gi|195058057|ref|XP_001995378.1| GH23128 [Drosophila grimshawi] gi|193899584|gb|EDV98450.1| GH23128 [Drosophila grimshawi] Length = 1294 Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 30/234 (12%), Positives = 67/234 (28%), Gaps = 9/234 (3%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + G+GKT + + +M L P +I +A + + +++ ++P Sbjct: 65 NTLVVLPTGLGKTFIASVVMYNLHRWFPRSKLIFMAPTRPLVAQ----QIAACHKIMPLP 120 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 ++ P AEL + + ++ + D Sbjct: 121 ASDVVELTGRLPRAKRAELWRSKRVFFATPQVVQSDMLEQQEQADGFQFPYEDIKLLVVD 180 Query: 199 EAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLN--GWFYDIFNIPLEDWKRYQIDT 255 EA + NP+ + S T N+ + + D+ Sbjct: 181 EAHRAKGRYAYTQVTESLMARNPHFRMLALSATPGRTMEDVAAVCRNLYISHLEVRCDDS 240 Query: 256 RTV-EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR 308 V + + I+ R +L Q + I + ++ A + Sbjct: 241 IDVRPYVHHRSLDTIVVPLADRIKEPRERLL-QIIDPYLRQLIAADVLKGARGK 293 >gi|261212229|ref|ZP_05926515.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC341] gi|260838837|gb|EEX65488.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC341] Length = 421 Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 41/318 (12%), Positives = 78/318 (24%), Gaps = 50/318 (15%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 + FS+P + Q E + SA G GKT A L Sbjct: 16 EAIEEMGFSRPTQVQAEAIPQALDG------------RDVLASAPTGTGKTAAFAIPALQ 63 Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 + P I+ + + AE ++ L+ + F + + Sbjct: 64 YLLDFPRRKAGPARILILTPTRELAMQV--AEQAQALAKNTRLNIFTITGGVQYQEHADI 121 Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 Q + + + DEA D+ + Sbjct: 122 LATTQDI--------VVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173 Query: 216 TELNPNRFWIMTSNTRRLN------------GWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + R + + + P + K+ + + Sbjct: 174 STECRWRKQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPH 233 Query: 264 --GFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AID 312 + I++ S V E L + IP +I E R Sbjct: 234 KVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAITRFR 293 Query: 313 DLYAPLIMGCDIAGEGGD 330 + +++ D+A G D Sbjct: 294 EGDVNILLATDVAARGID 311 >gi|311068527|ref|YP_003973450.1| hypothetical protein BATR1942_07900 [Bacillus atrophaeus 1942] gi|310869044|gb|ADP32519.1| hypothetical protein BATR1942_07900 [Bacillus atrophaeus 1942] Length = 563 Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 41/351 (11%), Positives = 78/351 (22%), Gaps = 49/351 (13%) Query: 20 MHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFM-EAVDVHCHSNVNNSNPTIF 78 M + F WG K P ++ F + + S + Sbjct: 6 MSQRKIDGFIKLAEVI-QWGRKN--------PVKFVERFFGMELLDYQKYAFIESWYKQY 56 Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 GR GKTTL + ++ P +A +Q + + Sbjct: 57 VLWCM-GRNSGKTTLGSPFIMAKSLLIPNFQAYILAGVGSQSQEMFLKIEKIAKREIASF 115 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + ++ + +F + F D Sbjct: 116 TGLTDIFYNETVKSAANTDGFTHNPASFQYKLYNGSIVNSLN-GSFDNNRSKRSNLNFYD 174 Query: 199 EASGTPDIINKSILG----------------FFTELNPNRFWIMTSNTRRLNGWFYDIFN 242 E+ PD + + I S+ + +FY ++ Sbjct: 175 ESGFAPDELFTTSEPFAVQNSDFRLGGDVDVTLFPKQMPNQLIYASSASSTDTYFYRKYS 234 Query: 243 IPLED---------WKRYQIDTRTVEGIDSGFH-------EGIISRYGLDSDVARIEILG 286 + D + + E + + + + A E Sbjct: 235 DFAKKMFLGDKRYFVADISSDIVINATFNGKLYPVSLLSQETVDAAMRDNKEKAMREYKN 294 Query: 287 QF-PQQEVNNFIPHNYIEEAMSREAID---DLYAPLIMGCDIAGEGGDKTV 333 F + N I I D + D A D +V Sbjct: 295 IFTTEGSDNQIIKRAMIIRNSETRPPVLVNDGNRKFLFAIDPAR-NHDNSV 344 >gi|238920149|ref|YP_002933664.1| hypothetical protein NT01EI_2255 [Edwardsiella ictaluri 93-146] gi|238869718|gb|ACR69429.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 601 Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 46/320 (14%), Positives = 92/320 (28%), Gaps = 33/320 (10%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 F++ + + +N + R IG T A+ I A S Sbjct: 149 FLDNLFKYQLHLRDNKFRRVRNL--LKARQIGATYYFAFEAFEDAVLTGDNQIFLSA-SR 205 Query: 118 TQLK-------NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 Q + E L P R + L + A+ + ID + Sbjct: 206 RQAEVFRTYILKIAQVEFGIQLKGNPIRLSNMAELHFLATNSNTAQSNSGHLYIDEYLWI 265 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 T++E + + + + F+ ++ + N R ++ Sbjct: 266 SKFTTFNE--VASGMATQSHWRLTYFSTPSAKNHQGYAFWSGDEWRRGNAERKSVVFPAF 323 Query: 231 RRLNGWFYDIFNIPLEDWK-RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 L + P + W+ ++ +G + E + RYG + + F Sbjct: 324 DELRDGGREC---PDKQWRYVVTMEDAIADGFNRADIEELRERYGE--NAFNRLYMCVFV 378 Query: 290 QQEVNNFIPHNYI----EEAMSREAIDDLYAPL----IMG-CDIAGEGGDKT--VVVF-- 336 + + F + + + ++ D APL + G D A G + T V+ Sbjct: 379 DDKDSVFDFAKLVRCGVDPHIWQDFHPDEAAPLGNREVWGGFDPARSGDNATFVVIAVPL 438 Query: 337 --RRGNIIEHIFDWSAKLIQ 354 + W Q Sbjct: 439 LAVERFRVLEKHHWRGLSFQ 458 >gi|284024511|ref|ZP_06378909.1| phiSLT ORF 563-like protein, terminase, large subunit [Staphylococcus aureus subsp. aureus 132] Length = 563 Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 47/348 (13%), Positives = 90/348 (25%), Gaps = 60/348 (17%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ + ++ H + I GR GKTT + + + +S G Sbjct: 81 QPWQHFIIGSLFGWVHK--ETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAE 138 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I +AN Q + L+ E + P +L + + + + Sbjct: 139 IHLLANVMKQAR-ILFDESKAMIKASP-------------------KLDKNFRTLRDEIH 178 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTS 228 + + + DE D + I +T+ Sbjct: 179 YDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITT 238 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRT---------------------------VEGI 261 +L+G D+ + + D RT V Sbjct: 239 AGYQLDGPLVDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSIN 298 Query: 262 DSGFHEGIISRYGLDSDV--ARIEILGQFPQQEVNNFIPHNYIEEAMSR-EAIDDLYAPL 318 E ++ + F + +FI + +++ + P Sbjct: 299 LDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYPTLQKNNEIVSLEELEGRPC 358 Query: 319 IMGCDIAGEGGDKTV----VVFRRGNIIEHIFDWSAKLIQETNQEGCP 362 +G D++ D T G + W K E + E P Sbjct: 359 TIGYDLSET-EDFTAACATFALDNGKVAVLSHSWIPKHKVEYSNEKIP 405 >gi|258420300|ref|ZP_05683247.1| gp38 [Staphylococcus aureus A9719] gi|258448839|ref|ZP_05696949.1| phage terminase large subunit [Staphylococcus aureus A6224] gi|282919225|ref|ZP_06326960.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus C427] gi|295407561|ref|ZP_06817354.1| phage terminase [Staphylococcus aureus A8819] gi|297246591|ref|ZP_06930424.1| phage terminase [Staphylococcus aureus A8796] gi|257843725|gb|EEV68127.1| gp38 [Staphylococcus aureus A9719] gi|257857876|gb|EEV80767.1| phage terminase large subunit [Staphylococcus aureus A6224] gi|282317035|gb|EFB47409.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus C427] gi|294967580|gb|EFG43616.1| phage terminase [Staphylococcus aureus A8819] gi|297176549|gb|EFH35814.1| phage terminase [Staphylococcus aureus A8796] Length = 566 Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 47/348 (13%), Positives = 90/348 (25%), Gaps = 60/348 (17%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ + ++ H + I GR GKTT + + + +S G Sbjct: 84 QPWQHFIIGSLFGWVHK--ETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAE 141 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I +AN Q + L+ E + P +L + + + + Sbjct: 142 IHLLANVMKQAR-ILFDESKAMIKASP-------------------KLDKNFRTLRDEIH 181 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTS 228 + + + DE D + I +T+ Sbjct: 182 YDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITT 241 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRT---------------------------VEGI 261 +L+G D+ + + D RT V Sbjct: 242 AGYQLDGPLVDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSIN 301 Query: 262 DSGFHEGIISRYGLDSDV--ARIEILGQFPQQEVNNFIPHNYIEEAMSR-EAIDDLYAPL 318 E ++ + F + +FI + +++ + P Sbjct: 302 LDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYPTLQKNNEIVSLEELEGRPC 361 Query: 319 IMGCDIAGEGGDKTV----VVFRRGNIIEHIFDWSAKLIQETNQEGCP 362 +G D++ D T G + W K E + E P Sbjct: 362 TIGYDLSET-EDFTAACATFALDNGKVAVLSHSWIPKHKVEYSNEKIP 408 >gi|160700654|ref|YP_001552334.1| gp5 [Mycobacterium phage Giles] gi|159136604|gb|ABW88400.1| gp5 [Mycobacterium phage Giles] Length = 544 Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 53/224 (23%), Gaps = 22/224 (9%) Query: 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 WQ + + + ++P + R GKT L A +++ + G I+ Sbjct: 78 WQWDAARKIMAT-RPDGLWAHPDVCLII---PRQNGKTQLIALRIIYGLF-FLGEKIVYT 132 Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173 A +K+ V SL S T Sbjct: 133 AQRWQTVKDVYDRIVEIIKRRP---------SLLRRLKPMPGVPDGYSEAGQHGEIYTTN 183 Query: 174 RTYSEERPDTFVGPHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT-- 230 + P T DEA D++ + G + I S Sbjct: 184 GGSLDMGPRTKAVGRGQTKIDLAIFDEAYDIKDVLVGGLTGAQKAATNPQT-IYISTAAV 242 Query: 231 ----RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGII 270 N ++ Y + G+ E Sbjct: 243 ASEHPDCGVLAGMRRNGQRKEPDLYAAEWCAPPGMARDDPEAWR 286 >gi|49485838|ref|YP_043059.1| terminase large subunit [Staphylococcus aureus subsp. aureus MSSA476] gi|49244281|emb|CAG42708.1| terminase large subunit [Staphylococcus aureus subsp. aureus MSSA476] Length = 566 Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 47/348 (13%), Positives = 90/348 (25%), Gaps = 60/348 (17%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ + ++ H + I GR GKTT + + + +S G Sbjct: 84 QPWQHFIIGSLFGWVHK--ETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAE 141 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I +AN Q + L+ E + P +L + + + + Sbjct: 142 IHLLANVMKQAR-ILFDESKAMIKASP-------------------KLDKNFRTLRDEIH 181 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTS 228 + + + DE D + I +T+ Sbjct: 182 YDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITT 241 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRT---------------------------VEGI 261 +L+G D+ + + D RT V Sbjct: 242 AGYQLDGPLVDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSIN 301 Query: 262 DSGFHEGIISRYGLDSDV--ARIEILGQFPQQEVNNFIPHNYIEEAMSR-EAIDDLYAPL 318 E ++ + F + +FI + +++ + P Sbjct: 302 LDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYPTLQKNNEIVSLEELEGRPC 361 Query: 319 IMGCDIAGEGGDKTV----VVFRRGNIIEHIFDWSAKLIQETNQEGCP 362 +G D++ D T G + W K E + E P Sbjct: 362 TIGYDLSET-EDFTAACATFALDNGKVAVLSHSWIPKHKVEYSNEKIP 408 >gi|282905860|ref|ZP_06313715.1| gp38 [Staphylococcus aureus subsp. aureus Btn1260] gi|282921761|ref|ZP_06329478.1| phage terminase, large subunit [Staphylococcus aureus A9765] gi|282927347|ref|ZP_06334965.1| phage terminase, large subunit [Staphylococcus aureus A10102] gi|282331152|gb|EFB60666.1| gp38 [Staphylococcus aureus subsp. aureus Btn1260] gi|282590671|gb|EFB95747.1| phage terminase, large subunit [Staphylococcus aureus A10102] gi|282594023|gb|EFB99012.1| phage terminase, large subunit [Staphylococcus aureus A9765] Length = 566 Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 47/348 (13%), Positives = 90/348 (25%), Gaps = 60/348 (17%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ + ++ H + I GR GKTT + + + +S G Sbjct: 84 QPWQHFIIGSLFGWVHK--ETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAE 141 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I +AN Q + L+ E + P +L + + + + Sbjct: 142 IHLLANVMKQAR-ILFDESKAMIKASP-------------------KLDKNFRTLRDEIH 181 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTS 228 + + + DE D + I +T+ Sbjct: 182 YDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITT 241 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRT---------------------------VEGI 261 +L+G D+ + + D RT V Sbjct: 242 AGYQLDGPLVDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSIN 301 Query: 262 DSGFHEGIISRYGLDSDV--ARIEILGQFPQQEVNNFIPHNYIEEAMSR-EAIDDLYAPL 318 E ++ + F + +FI + +++ + P Sbjct: 302 LDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYPTLQKNNEIVSLEELEGRPC 361 Query: 319 IMGCDIAGEGGDKTV----VVFRRGNIIEHIFDWSAKLIQETNQEGCP 362 +G D++ D T G + W K E + E P Sbjct: 362 TIGYDLSET-EDFTAACATFALDNGKVAVLSHSWIPKHKVEYSNEKIP 408 >gi|257091053|ref|ZP_05585414.1| terminase large subunit [Enterococcus faecalis CH188] gi|256999865|gb|EEU86385.1| terminase large subunit [Enterococcus faecalis CH188] Length = 577 Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 41/374 (10%), Positives = 88/374 (23%), Gaps = 71/374 (18%) Query: 6 STDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVH 65 ST + Q L K + + W +WQ + Sbjct: 64 STGEWSGQPLELEDWQ-------KFYFSNIYGWQKWS---------DKWQRNVRVIRKSY 107 Query: 66 CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNT 123 N GK+ + +L+ + G C+A Q +N Sbjct: 108 LQVPKKN----------------GKSLMEGAPILYGMYGEGVKGAQFYCLAADFDQAQNV 151 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR--------- 174 + + + + E + ++ R Sbjct: 152 ANPLATVIENDNDLLDGTRVYRKEKKVTTISYAFFEDDFKYQNNLRVLSKREKVDGKNTY 211 Query: 175 -TYSEERPDTFVGPHNT----------HGMAVFNDEASG----TPDIINKSILGFFTELN 219 ++E + + + A I + E N Sbjct: 212 IVVADEVHEWEDTSRYDGLKSGQAAQPEPLFLVCSTAGKNSGALGVQIYQDSKHILEEDN 271 Query: 220 PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279 + ++IM + W + + + + + F + + + + Sbjct: 272 DDDWFIMIYEPNKGYNWEDEKVWEMV---NPNLYVSFDITFLRGEFKDALRNPFRK--AE 326 Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFR-- 337 + L F N + I+ + + D + +G D++ D T V Sbjct: 327 FLSKHLNVFVNYAEN-YFDKEQIDNCLVDDLGDITGEQVTIGIDLSRT-TDLTCVSINIP 384 Query: 338 ----RGNIIEHIFD 347 G I I Sbjct: 385 TFNDEGESIIKIKQ 398 >gi|144898790|emb|CAM75654.1| DNA maturase B [Magnetospirillum gryphiswaldense MSR-1] Length = 495 Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 36/324 (11%), Positives = 75/324 (23%), Gaps = 58/324 (17%) Query: 54 WQLEFMEAVDVHCHS----NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 W + ++ H + + A R GK+T+ W + P + Sbjct: 14 WNAKLGQSTPPHHLRMARWLARKYKSHHRELLLMAFRNSGKSTIVGLFCAWALLCDPNLR 73 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 II +A K + V + + P + + S + + S Sbjct: 74 IIILAADFALAKKMV-RNVKRIIERHPLTQGLKPKRRDHWASDQFTVNRPGELRDPSMVA 132 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS------------ILGFFTE 217 + R + V D+ P+ + + I Sbjct: 133 KGIGANITGSRAE-----------IVICDDVE-VPNTCDSAPKRQDLRERLGEIEYVLVP 180 Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR--TVEGIDSGFHEGIISRYGL 275 + + + + + + + +D R+ Sbjct: 181 GG---LQLYVGTPHSFYTIYAAQARLEAGEERPFLDGFHRLELPLLDKNGASAWPERFPA 237 Query: 276 DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMG-------------- 321 D G +P N + + + + A L+ Sbjct: 238 DKIAGIRRRTGPNKFDSQMMLMPVNIADGRLDPDRLRLYQADLVYAEGNGLPVLSLDDKR 297 Query: 322 -------CDIAGEG---GDKTVVV 335 D A GD +VV Sbjct: 298 LVSASCWWDPAYGAPGKGDASVVA 321 >gi|57651294|ref|YP_185259.1| prophage L54a, terminase, large subunit, putative [Staphylococcus aureus subsp. aureus COL] gi|66395593|ref|YP_239935.1| ORF005 [Staphylococcus phage 3A] gi|148267493|ref|YP_001246436.1| phage terminase [Staphylococcus aureus subsp. aureus JH9] gi|150393547|ref|YP_001316222.1| phage terminase [Staphylococcus aureus subsp. aureus JH1] gi|262052891|ref|ZP_06025074.1| prophage L54a, terminase, large subunit, putative [Staphylococcus aureus 930918-3] gi|57285480|gb|AAW37574.1| prophage L54a, terminase, large subunit, putative [Staphylococcus aureus subsp. aureus COL] gi|62635939|gb|AAX91050.1| ORF005 [Staphylococcus phage 3A] gi|147740562|gb|ABQ48860.1| phage Terminase [Staphylococcus aureus subsp. aureus JH9] gi|149945999|gb|ABR51935.1| phage Terminase [Staphylococcus aureus subsp. aureus JH1] gi|259159198|gb|EEW44259.1| prophage L54a, terminase, large subunit, putative [Staphylococcus aureus 930918-3] gi|329730589|gb|EGG66974.1| putative phage terminase, large subunit [Staphylococcus aureus subsp. aureus 21193] Length = 563 Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 47/348 (13%), Positives = 90/348 (25%), Gaps = 60/348 (17%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ + ++ H + I GR GKTT + + + +S G Sbjct: 81 QPWQHFIIGSLFGWVHK--ETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAE 138 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I +AN Q + L+ E + P +L + + + + Sbjct: 139 IHLLANVMKQAR-ILFDESKAMIKASP-------------------KLDKNFRTLRDEIH 178 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTS 228 + + + DE D + I +T+ Sbjct: 179 YDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITT 238 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRT---------------------------VEGI 261 +L+G D+ + + D RT V Sbjct: 239 AGYQLDGPLVDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSIN 298 Query: 262 DSGFHEGIISRYGLDSDV--ARIEILGQFPQQEVNNFIPHNYIEEAMSR-EAIDDLYAPL 318 E ++ + F + +FI + +++ + P Sbjct: 299 LDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYPTLQKNNEIVSLEELEGRPC 358 Query: 319 IMGCDIAGEGGDKTV----VVFRRGNIIEHIFDWSAKLIQETNQEGCP 362 +G D++ D T G + W K E + E P Sbjct: 359 TIGYDLSET-EDFTAACATFALDNGKVAVLSHSWIPKHKVEYSNEKIP 405 >gi|262172263|ref|ZP_06039941.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus MB-451] gi|261893339|gb|EEY39325.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus MB-451] Length = 416 Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 41/318 (12%), Positives = 78/318 (24%), Gaps = 50/318 (15%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 + FS+P + Q E + SA G GKT A L Sbjct: 16 EAIEEMGFSRPTQVQAEAIPQALDG------------RDVLASAPTGTGKTAAFAIPALQ 63 Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 + P I+ + + AE ++ L+ + F + + Sbjct: 64 YLLDFPRRKAGPARILILTPTRELAMQV--AEQAQALAKNTRLNIFTITGGVQYQEHADI 121 Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 Q + + + DEA D+ + Sbjct: 122 LATTQDI--------VVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173 Query: 216 TELNPNRFWIMTSNTRRLN------------GWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + R + + + P + K+ + + Sbjct: 174 SAECRWRKQTLLFSATLEGRGVEGFTADLLKNPAHIDAEPPRRERKKISQWYHRADDMPH 233 Query: 264 --GFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AID 312 + I++ S V E L + IP +I E R Sbjct: 234 KVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAITRFR 293 Query: 313 DLYAPLIMGCDIAGEGGD 330 + +++ D+A G D Sbjct: 294 EGSVNILLATDVAARGID 311 >gi|217973759|ref|YP_002358510.1| Terminase [Shewanella baltica OS223] gi|217498894|gb|ACK47087.1| Terminase [Shewanella baltica OS223] Length = 581 Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 36/344 (10%), Positives = 85/344 (24%), Gaps = 58/344 (16%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ + ++ + + F+ + +G+G GK+ L + L+ + Sbjct: 91 DWQAFIVGSLF----GWKDADHTRRFRMCYVESGKGSGKSPLAGGIGLYGLVADGEASAE 146 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I A + Q L+ + P LS ++ K+ Sbjct: 147 IYAAATKKDQAM-VLFRDAVSMFRQSP--------QLSARLKPSGTAQNVWNLAYLEKNS 197 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 + D DE + ++ T+ M +N Sbjct: 198 F-----FRPISSDNGQS--GPRPHMALIDEVHEHKNNNVVEMMRAGTKGRKQALIFMITN 250 Query: 230 ----------------------TRRLNGWFYDIFNIPL------EDWKRYQIDTRTVEGI 261 T+ + +F I ++ ++ + + Sbjct: 251 SGHDRTSVCYSYHEYGKAICVGTKEDDSFFAFICSLDEGDDPINDESCWQKANPSLGHTF 310 Query: 262 DSGFHEG---IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318 + + R Q+ + + + + + Sbjct: 311 THKYLREQVTQAKGMPAKESIVRRLNFCQWVDSASPWLSADTWTDCEDDFDISELVGEEC 370 Query: 319 IMGCDIAGEGGDKTVVVFR--RGNIIEHIFDWSAKLIQETNQEG 360 G D++G D T + R + + W+ K + Sbjct: 371 YGGLDLSGT-RDLTALALYFPRVKTLL-VEFWTPKDTLLDRERT 412 >gi|167462274|ref|ZP_02327363.1| hypothetical protein Plarl_06915 [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382817|ref|ZP_08056660.1| phage-related terminase-like protein large subunit [Paenibacillus larvae subsp. larvae B-3650] gi|321153200|gb|EFX45647.1| phage-related terminase-like protein large subunit [Paenibacillus larvae subsp. larvae B-3650] Length = 423 Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 31/279 (11%), Positives = 74/279 (26%), Gaps = 55/279 (19%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + G G K+ + L L + + + +++ ++ + + ++ L Sbjct: 24 LVGGYGSSKSYHV-ALKLVLKLLNEKRTALVVREVYDTHRDSTYSLLEEIITDLGLDGTV 82 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + + + + I ++P H + V+ +E S Sbjct: 83 RPITSPM------------QIRFPNGSKIIFKGM---DKPAKLKSIH--NVSIVWIEECS 125 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-------------------- 241 K +LG + ++++N + W + F Sbjct: 126 EVKYEGFKELLGRLRHPALDLHMLLSTNPVGEDNWTFKHFFKDELKNHIVLEDTDLYEKR 185 Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF------------P 289 I D + + + + D D+ RI G+F Sbjct: 186 TIVKNDTFYHHSTAEDNLFLPKSYVAQLDELKAYDPDLYRIAREGRFGVNGVRVLPQFEV 245 Query: 290 QQEVNNFIPHNYIEEAMSREA-----IDDLYAPLIMGCD 323 + I + + R D A + + D Sbjct: 246 ASHEEVIEAISRIRKPIERTGMDFGFEDSYNAVVRLAVD 284 >gi|253579099|ref|ZP_04856370.1| DNA/RNA helicase superfamily II protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850042|gb|EES78001.1| DNA/RNA helicase superfamily II protein [Ruminococcus sp. 5_1_39BFAA] Length = 1053 Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 26/185 (14%), Positives = 59/185 (31%), Gaps = 28/185 (15%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P+ +Q E ++ + ++ +SA G+GKT + A+ P + Sbjct: 328 PYAYQQEILDNLAA------EREVYGHYRNLVSAATGVGKTIIAAFDYKAFKEKNPRARL 381 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + +A+ K L + K+ +L ++ E+ P+ + +K Sbjct: 382 LFVAHR----KEILEQSIQKFQEVLNDFNFGELYVDGYKPTDIEHLFISIQSFNSAKLSQ 437 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 T + + + DE + + P +T+ Sbjct: 438 WTSK---------------DYYDFIIVDEFHHAAADSYQEL---LAYYEPKILLGLTATP 479 Query: 231 RRLNG 235 R++G Sbjct: 480 DRMDG 484 >gi|307290792|ref|ZP_07570686.1| hypothetical protein HMPREF9509_01090 [Enterococcus faecalis TX0411] gi|306498101|gb|EFM67624.1| hypothetical protein HMPREF9509_01090 [Enterococcus faecalis TX0411] gi|315163698|gb|EFU07715.1| conserved hypothetical protein [Enterococcus faecalis TX1302] Length = 577 Score = 49.9 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 41/374 (10%), Positives = 88/374 (23%), Gaps = 71/374 (18%) Query: 6 STDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVH 65 ST + Q L K + + W +WQ + Sbjct: 64 STGEWSGQPLELEDWQ-------KFYFSNIYGWQKWS---------DKWQRNVRVIRKSY 107 Query: 66 CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNT 123 N GK+ + +L+ + G C+A Q +N Sbjct: 108 LQVPKKN----------------GKSLMEGAPILYGMYGEGVKGAQFYCLAADFDQAQNV 151 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR--------- 174 + + + + E + ++ R Sbjct: 152 ANPLATVIENDNDLLDGTRVYRKEKKVTTISYAFFEDDFKYQNNLRVLSKREKVDGKNTY 211 Query: 175 -TYSEERPDTFVGPHNT----------HGMAVFNDEASG----TPDIINKSILGFFTELN 219 ++E + + + A I + E N Sbjct: 212 IVVADEVHEWEDTSRYDGLKSGQAAQPEPLFLVCSTAGKNSGALGVQIYQDSKHILEEDN 271 Query: 220 PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279 + ++IM + W + + + + + F + + + + Sbjct: 272 DDDWFIMIYEPNKGYNWEDEKVWEMV---NPNLYVSFDITFLRGEFKDALRNPFRK--AE 326 Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFR-- 337 + L F N + I+ + + D + +G D++ D T V Sbjct: 327 FLSKHLNVFVNYAEN-YFDKEQIDNCLVDDLGDITGEQVAIGIDLSRT-TDLTCVSINIP 384 Query: 338 ----RGNIIEHIFD 347 G I I Sbjct: 385 TFNDEGESIIKIKQ 398 >gi|258620330|ref|ZP_05715368.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM573] gi|258624701|ref|ZP_05719635.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM603] gi|258582988|gb|EEW07803.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM603] gi|258587209|gb|EEW11920.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM573] Length = 416 Score = 49.9 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 41/318 (12%), Positives = 78/318 (24%), Gaps = 50/318 (15%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 + FS+P + Q E + SA G GKT A L Sbjct: 16 EAIEEMGFSRPTQVQAEAIPQALDG------------RDVLASAPTGTGKTAAFAIPALQ 63 Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 + P I+ + + AE ++ L+ + F + + Sbjct: 64 YLLDFPRRKAGPARILILTPTRELAMQV--AEQAQALAKNTRLNIFTITGGVQYQEHADI 121 Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 Q + + + DEA D+ + Sbjct: 122 LATTQDI--------VVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173 Query: 216 TELNPNRFWIMTSNTRRLN------------GWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + R + + + P + K+ + + Sbjct: 174 SAECRWRKQTLLFSATLEGRGVEGFTADLLKNPAHIDAEPPRRERKKISQWYHRADDMPH 233 Query: 264 --GFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AID 312 + I++ S V E L + IP +I E R Sbjct: 234 KVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAITRFR 293 Query: 313 DLYAPLIMGCDIAGEGGD 330 + +++ D+A G D Sbjct: 294 EGSVNILLATDVAARGID 311 >gi|293369707|ref|ZP_06616283.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f] gi|292635129|gb|EFF53645.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f] Length = 541 Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 83/301 (27%), Gaps = 31/301 (10%) Query: 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSII 111 WQ + + T +S R GKT L A + L+ + G ++ Sbjct: 73 WQQFIIANILGFYWKGTGTRRFTSSYIEVS--RKQGKTALAAALCLYYLIADGEDGAEVL 130 Query: 112 CIANSETQLKNTL---------WAEVSKWLSMLPHRHWFEMQSLSLH-PSGWYAELLEQS 161 ANS+ Q K K+L+ F+ + L + ++L + Sbjct: 131 LAANSKEQAKIAFDMCSKFSKGLDTKGKYLTAYRADILFKATNSKLKVLAADDSKLDGFN 190 Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE---- 217 +T + A + + E Sbjct: 191 ASFGLLDEYHAAKTSKVRDVIKSSMGMRENPHLCTITTAGFDKTLPCYQLRTVAIEVLNE 250 Query: 218 -LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRY--- 273 + + +I + + W + ++ + S + +G + + Sbjct: 251 LKSDDEMFIAIYSLDADDDW--------RSEKNWMKVAPNLNITVTSKYIKGQVQQAINN 302 Query: 274 GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTV 333 D R + L Q+ + I+ + + P +G D+A D T Sbjct: 303 PSDEVGVRTKTLNQWCDSATVWLSDESIIKCTQAVDLSKFRGLPCYVGVDLAAT-SDLTA 361 Query: 334 V 334 V Sbjct: 362 V 362 >gi|283470731|emb|CAQ49942.1| putative phage terminase, large subunit [Staphylococcus aureus subsp. aureus ST398] Length = 563 Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 47/348 (13%), Positives = 90/348 (25%), Gaps = 60/348 (17%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ + ++ H + I GR GKTT + + + +S G Sbjct: 81 QPWQHFIIGSLFGWVHK--ETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAE 138 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I +AN Q + L+ E + P +L + + + + Sbjct: 139 IHLLANVMKQAR-ILFDESKAMIKASP-------------------KLDKNFRTLRDEIH 178 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTS 228 + + + DE D + I +T+ Sbjct: 179 YDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITT 238 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRT---------------------------VEGI 261 +L+G D+ + + D RT V Sbjct: 239 AGYQLDGPLVDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSIN 298 Query: 262 DSGFHEGIISRYGLDSDV--ARIEILGQFPQQEVNNFIPHNYIEEAMSR-EAIDDLYAPL 318 E ++ + F + +FI + +++ + P Sbjct: 299 LDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYPTLQKNNEIVSLEELEGRPC 358 Query: 319 IMGCDIAGEGGDKTV----VVFRRGNIIEHIFDWSAKLIQETNQEGCP 362 +G D++ D T G + W K E + E P Sbjct: 359 TIGYDLSET-EDFTAACATFALDNGKVAVLTHSWIPKHKVEYSNEKIP 405 >gi|320156410|ref|YP_004188789.1| phage terminase large subunit [Vibrio vulnificus MO6-24/O] gi|319931722|gb|ADV86586.1| phage terminase large subunit [Vibrio vulnificus MO6-24/O] Length = 586 Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 40/350 (11%), Positives = 90/350 (25%), Gaps = 63/350 (18%) Query: 22 AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81 A+ V+ F F+ KGK + WQ + ++ + + Sbjct: 77 AQRVIDFYKFIRHT-----KGKLARTVMKLMPWQQFCVGSIVGWVYKDTGFRRFKQANIW 131 Query: 82 ISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 ++ R GK+TL + + L+ + G I IA + Q K ++ + + LSM + Sbjct: 132 VA--RKNGKSTLASGLGLYFLIADGEVGAEIYSIAVKKDQAK-IVFDDAVRMLSMSELKE 188 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 ++ S+ +A+ + + DE Sbjct: 189 VLTVKRDSITFDAEFAKFVPL--------------------ASDSNSLDGLNTHCFIADE 228 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTR---------------------------R 232 D ++ T S Sbjct: 229 LHSWKDRNLWGVMETSTGAREQPLAFSISTAGWILDGIGKELFDDGCTILENYGLEENVF 288 Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL---DSDVARIEILGQFP 289 + D + + + + + E + + + + L + Sbjct: 289 TMNYTLDDGDKFNDRTCWIKANPCLGVSVKEEDIERLCRKAERMASERANFLTKRLNVWV 348 Query: 290 QQEVNNFIPHNYIEEAMSREAIDD--LYAPLIMGCDIAGEGGDKTVVVFR 337 ++ + + + A + I+G D A +V Sbjct: 349 NNAE-AWLNLDKLYKCADPNARLEDFEGRDCIIGVDFADYLDLTSVCYLF 397 >gi|283469600|emb|CAQ48811.1| putative phage terminase, large subunit [Staphylococcus aureus subsp. aureus ST398] Length = 563 Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 47/348 (13%), Positives = 90/348 (25%), Gaps = 60/348 (17%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ + ++ H + I GR GKTT + + + +S G Sbjct: 81 QPWQHFIIGSLFGWVHK--ETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAE 138 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I +AN Q + L+ E + P +L + + + + Sbjct: 139 IHLLANVMKQAR-ILFDESKAMIKASP-------------------KLDKNFRTLRDEIH 178 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTS 228 + + + DE D + I +T+ Sbjct: 179 YDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITT 238 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRT---------------------------VEGI 261 +L+G D+ + + D RT V Sbjct: 239 AGYQLDGPLVDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSIN 298 Query: 262 DSGFHEGIISRYGLDSDV--ARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPL 318 E ++ + F + +FI + +++ + P Sbjct: 299 LDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYPTLQKNNEIISLEELEGRPC 358 Query: 319 IMGCDIAGEGGDKTV----VVFRRGNIIEHIFDWSAKLIQETNQEGCP 362 +G D++ D T G + W K E + E P Sbjct: 359 TIGYDLSET-EDFTAACATFALDNGKVAVLTHSWIPKHKVEYSNEKIP 405 >gi|255652557|ref|ZP_05399459.1| hypothetical protein CdifQCD_20411 [Clostridium difficile QCD-37x79] Length = 591 Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 40/289 (13%), Positives = 73/289 (25%), Gaps = 47/289 (16%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + I A RG K+ + A P I A +++Q + L Sbjct: 64 YAMLICA-RGFAKSWIAAVYACCRAVLYPNSKIGIAAFTKSQAE-------------LII 109 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 R E + + P + SK T + + Sbjct: 110 REKIEKELVKQSPMLAREIKKIEYNNKFSKVTFHNGSTIEAIVSN--EQSRGFRFNILIV 167 Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSN----TRRLNGWFY-----DIFNIPLEDW 248 DE I IL F ++ N + N Y + + + Sbjct: 168 DEFRLVKKEIQDRILKPFLNVSRNLKFKKDGKYEDYPPEPNKELYLSSAWFRMHEAYDKF 227 Query: 249 KRYQIDTRT----------------VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292 K Y D +D + + D+ +E+ F + Sbjct: 228 KLYVKDMVDGRDKFVLNCNYKLSLHHGILDKERADEMKREM--DAVSWIMEMESLFFGEN 285 Query: 293 VNNFIPHNYIEEAMS-REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGN 340 + +Y+ + + I+ A G K + R+G Sbjct: 286 EDAIFKSSYVNPCRTLKNPFYPPTDLEILS---AKNGKVKCNLQKRKGE 331 >gi|126436464|ref|YP_001072155.1| hypothetical protein Mjls_3888 [Mycobacterium sp. JLS] gi|126236264|gb|ABN99664.1| protein of unknown function DUF264 [Mycobacterium sp. JLS] Length = 496 Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 39/280 (13%), Positives = 76/280 (27%), Gaps = 38/280 (13%) Query: 79 KCAISAGRGIGKTTLNAWMM-LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + ++ GK+ L + ++ +WL+S P +I + + + A + ++ P Sbjct: 53 RLIVTMPPRTGKSVLTSQVLPVWLLSRDPDAEVIVKSYGDALAEEHSAA-ARRLIAENPA 111 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 E+ + W M + T S D V Sbjct: 112 VVGIELAADKQAVGRWRVAGHRGGMLAGGILSSTTGFGASVLLVDDPVKG---------A 162 Query: 198 DEASGTP-----DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252 EA K+ L + ++ + + P W+ Sbjct: 163 QEADSDAYRRRLTAEFKASLMTRLMPGASAIVVL--TRWHPDDLAGSLLAEPGSRWRCVN 220 Query: 253 IDTRTVEGIDSGFHEGI-----------------ISRYGLDSDVARIEILGQFPQQEVNN 295 I + G+ + + S LG P Sbjct: 221 IPAISTAGVPDALGRERSGVAMTSAVGRTAEQFREIKSEVGSRAWAAMYLGT-PTTPEGG 279 Query: 296 FIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEG-GDKTVV 334 I +I+ A +++G D A G GD+T + Sbjct: 280 LIKAAWIDT-WRLPAAPPGTVKIVVGVDPADSGEGDETGI 318 >gi|306827214|ref|ZP_07460502.1| PBSX family phage terminase [Streptococcus pyogenes ATCC 10782] gi|304430571|gb|EFM33592.1| PBSX family phage terminase [Streptococcus pyogenes ATCC 10782] Length = 435 Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 37/269 (13%), Positives = 73/269 (27%), Gaps = 23/269 (8%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 ++ + RG K+ A + + P +++ I K + + + + L Sbjct: 33 NFYRV-VKGSRGSKKSKTTALNFIVRLLKYPWANLLVIRRYSNTNKQSTYTDFKWACNQL 91 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 H F+ + + + I R +E T + Sbjct: 92 KVSHLFKFNES------------LPEITVKATGQKILFRGLDDELKITSITVDVGALCWA 139 Query: 196 FNDEASGTPDI-----INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NIPLED 247 + +EA + +SI G + + +T N W +F D Sbjct: 140 WFEEAYQIETEDKFSTVVESIRGTLDVPDFFKQITVTFNPWSERHWLKRVFFDEETKRAD 199 Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307 R E +D Y + ARI G + E F ++ + Sbjct: 200 TFSGTTTFRVNEWLDDVDKRRYEDLYKTNPRRARIVCDGDWGVAEGLVFDNFEVVDFDVE 259 Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 + G D T++ Sbjct: 260 KTIQRVKETS--AGMDFGFTQDPTTLICV 286 >gi|226949592|ref|YP_002804683.1| phage terminase, large subunit, pbsx family [Clostridium botulinum A2 str. Kyoto] gi|226841691|gb|ACO84357.1| phage terminase, large subunit, pbsx family [Clostridium botulinum A2 str. Kyoto] Length = 451 Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 25/227 (11%), Positives = 65/227 (28%), Gaps = 38/227 (16%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + G G K+ A ++ L + + + ++++ ++ + ++ + Sbjct: 25 LVGGYGSSKSYHVALKLI-LKLLEEKRTALVVREVYDTIRDSCFSLFDEIITEMELDDRI 83 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + + + + + I ++P + ++ +E S Sbjct: 84 KCVTSPM------------QIRFPNGSKIIFKGM---DKPAKLKSI--NNVSIIWIEECS 126 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP----------------- 244 K +LG I+++N N W Y F + Sbjct: 127 EVKYAGFKELLGRLRHPTLELHMILSTNPVSKNNWCYKHFFMDTKKKIFILDDKELYKNR 186 Query: 245 ---LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 + + + + E + D D+ RI G+F Sbjct: 187 IIIKNNTYYHHSLADDNLFLPKTYIEQLDELKTYDIDLYRIARRGRF 233 >gi|254418922|ref|ZP_05032646.1| conserved hypothetical protein [Brevundimonas sp. BAL3] gi|196185099|gb|EDX80075.1| conserved hypothetical protein [Brevundimonas sp. BAL3] Length = 694 Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 43/309 (13%), Positives = 76/309 (24%), Gaps = 53/309 (17%) Query: 83 SAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 GRG GKT A + + G + I + ++ + A P Sbjct: 263 LGGRGAGKTLAGASWIADMAERLGAGGRLALIGPTLHDVREVMIAG--------PSGVMS 314 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + + G + + + A + DE Sbjct: 315 LPRWTGVGGDGAVEWRGPEYQPSRRRLVFPNGAEAFVFSAEDPDSLRGPQFAAAWADEFC 374 Query: 202 GT--------------------PDIINKSILGF-----------FTELNPNRFWIMTSNT 230 PD E + + ++T+ Sbjct: 375 AWRNGGETLALLRMGLRLRLPNPDSPAVDADAAQNGGVGAKVARLREPSDSPRLVVTTTP 434 Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290 R + + + GF EG+ YG A E+ GQ + Sbjct: 435 RPT--RALKALRAEASCALTHATTRDNGDHLAPGFLEGLERLYGGTRRAA-QELEGQVVE 491 Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAP----LIMGCDI--AGEGGDKTVVVF--RRGNII 342 + A + P +++G D + GGD +V RRG Sbjct: 492 -PEGGLFTAEMMAAARGEAPVSVEARPVYERVVVGLDPTCSR-GGDACGIVAVGRRGETA 549 Query: 343 EHIFDWSAK 351 + D S + Sbjct: 550 WVLADRSMR 558 >gi|319950568|ref|ZP_08024477.1| hypothetical protein ES5_13328 [Dietzia cinnamea P4] gi|319435762|gb|EFV90973.1| hypothetical protein ES5_13328 [Dietzia cinnamea P4] Length = 536 Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 51/170 (30%), Gaps = 10/170 (5%) Query: 61 AVDVHCHSNVN---NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 + + + + + I G G GKT L + +R G + I S Sbjct: 201 DIADALTREQSVLLRAVDALPRVEIRGGAGSGKTYLA--LEQARRLSRDGQRVALICYS- 257 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL-HPSGWYAELLEQSMGIDSKHYTITCRTY 176 L + L + W + E +L + + + +S R Sbjct: 258 HGLASYLRRVTNGWKRRERPAYVGEFHALGVEWGAPAGPDERIRSAESVRWWEEELPRLM 317 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226 SE P AV DEA D + ++G + R I+ Sbjct: 318 SEL---ADGLPGGRRFDAVIVDEAQDFADSWWQPVIGALRDRENGRLMIV 364 >gi|318057426|ref|ZP_07976149.1| phage terminase, large subunit, PBSX family [Streptomyces sp. SA3_actG] gi|318075987|ref|ZP_07983319.1| phage terminase, large subunit, PBSX family [Streptomyces sp. SA3_actF] Length = 423 Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 30/264 (11%), Positives = 68/264 (25%), Gaps = 39/264 (14%) Query: 92 TLNAWMMLWLISTRPGMSII--------CIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 +A + +W + R G ++ + L + + + + Sbjct: 17 AASARINIWHGAIRSGKTVASLIAFLIAVSTAPASGLIVIVGRSLQTIERNVLDPLQDDA 76 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + + + + + E + DEA+ Sbjct: 77 LFGPIARQVVHTRGATVATILGRTVHLVGAADSRAEGR-----LRGLTACLAYVDEATLI 131 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF--NIPLEDWKRYQIDTRTVEGI 261 P +LG + T+N W F D + + + Sbjct: 132 PRGFWNQLLGRLSVPGAKLM--ATTNPDNPGHWLRREFLDREGDLDLRSWHFTLDDNPAL 189 Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI-----PHNYIEE--AMSREA---- 310 D+ + + S Y R I G + Q + + + + R Sbjct: 190 DAAYVTSLKSEYTG--LWYRRFIAGHWV-QSEGAIYETFDPARHVVRDLPRIDRWVCDAI 246 Query: 311 ---IDDLYAPLIMGCDIAGEGGDK 331 + YA +++G G D+ Sbjct: 247 DYGTVNPYADVLLGV-----GADR 265 >gi|297591009|ref|ZP_06949647.1| terminase large subunit [Staphylococcus aureus subsp. aureus MN8] gi|297575895|gb|EFH94611.1| terminase large subunit [Staphylococcus aureus subsp. aureus MN8] Length = 563 Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 52/349 (14%), Positives = 94/349 (26%), Gaps = 62/349 (17%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTR--PGM 108 WQ + ++ H F+ A I GR GKTT + + + +S G Sbjct: 81 QPWQHFIIGSLFGWVHKETKLR---RFREALIFMGRKNGKTTTISGVANYGVSQDGENGA 137 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 I +AN Q + L+ E + P L + D Sbjct: 138 EIHLLANVMKQAR-ILFDESKAMIKASPILSR-------------EFRPLRDEIHYDKTI 183 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMT 227 I + ++ D + DE D + I +T Sbjct: 184 SKIMPQASDSDKLD------GLNTHIGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYIT 237 Query: 228 SNTRRLNGWFYDIFNIPLE--------------------------DWKRYQIDTRTVEGI 261 + +L+G D+ + + + + I Sbjct: 238 TAGYQLDGPLVDMVEMGRDILDGVIEDERTFYYLASLDDDDDMNDSSNWIKANPNLGVSI 297 Query: 262 DSGFHEGIISRYGLDSDV---ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD-LYAP 317 D + + + F + +FI + +++ A+DD P Sbjct: 298 DLEEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYQTLQKNNDVIALDDLEGRP 357 Query: 318 LIMGCDIAGEGGDKTV----VVFRRGNIIEHIFDWSAKLIQETNQEGCP 362 +G D++ D T G + W K E + E P Sbjct: 358 CTIGYDLSET-EDFTAACATFALDNGKVAVLSHSWIPKHKVEYSNEKIP 405 >gi|154251358|ref|YP_001412182.1| hypothetical protein Plav_0902 [Parvibaculum lavamentivorans DS-1] gi|154155308|gb|ABS62525.1| protein of unknown function DUF264 [Parvibaculum lavamentivorans DS-1] Length = 448 Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 25/227 (11%), Positives = 47/227 (20%), Gaps = 24/227 (10%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + GRG GKT A + ++ I I + + + S ++ Sbjct: 73 VLGGRGAGKTRAGAEWVAAEVAAGRAGRIALIGETLADAREVMIDGPSGLRTIAREDEKP 132 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + A + DE + Sbjct: 133 RYEVTRKRL------------------LWPNGAVAYVFSAGEPESLRGPQFDAAWGDELA 174 Query: 202 GT--PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 + + R + + T R + R Sbjct: 175 KWRYAEAAWDMLQFGLRLGENPRQ--VMTTTPRPVPVLKRLIADKTTVTTRAATAANRAN 232 Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306 D F I G + + R E+ + + IE Sbjct: 233 LADGFFRAVIARYEG--TRLGRQELDAELIDDNPDALWKREAIERGR 277 >gi|209976840|ref|NP_044866.2| DNA packaging terminase subunit 1 [Murid herpesvirus 4] gi|6625593|gb|AAF19294.1|AF105037_26 29 [murid herpesvirus 4] Length = 679 Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 26/203 (12%), Positives = 65/203 (32%), Gaps = 18/203 (8%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 +F+ + ++++ I R GKT + ++ L+++ + I +A+ Sbjct: 191 KFLLDMLYFDNTDLLTFLQKSPAFLI--PRRHGKTWIVTAIISMLLTSVDDLHIGYVAHQ 248 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 + + ++ E+S WF +++ + T Sbjct: 249 KH-VSLAVFLEISN-----ILLAWFPRKNIDIKKENGVILYSHPGKK---------SSTL 293 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT-RRLNG 235 +F DEA+ +ILGF + + F+I + N+ + Sbjct: 294 MCATCFNKNSIRGQTFNLLFVDEANFIKKEALPAILGFMLQKDAKIFFISSVNSGEKTTS 353 Query: 236 WFYDIFNIPLEDWKRYQIDTRTV 258 + Y++ + + Sbjct: 354 FLYNLKDANEKMVNVVSYVCSEH 376 >gi|49483696|ref|YP_040920.1| terminase large subunit [Staphylococcus aureus subsp. aureus MRSA252] gi|257432452|ref|ZP_05608815.1| terminase large subunit [Staphylococcus aureus subsp. aureus E1410] gi|49241825|emb|CAG40517.1| terminase large subunit [Staphylococcus aureus subsp. aureus MRSA252] gi|257283331|gb|EEV13463.1| terminase large subunit [Staphylococcus aureus subsp. aureus E1410] Length = 566 Score = 49.9 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 52/349 (14%), Positives = 94/349 (26%), Gaps = 62/349 (17%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTR--PGM 108 WQ + ++ H F+ A I GR GKTT + + + +S G Sbjct: 84 QPWQHFIIGSLFGWVHKETKLR---RFREALIFMGRKNGKTTTISGVANYGVSQDGENGA 140 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 I +AN Q + L+ E + P L + D Sbjct: 141 EIHLLANVMKQAR-ILFDESKAMIKASPILSR-------------EFRPLRDEIHYDKTI 186 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMT 227 I + ++ D + DE D + I +T Sbjct: 187 SKIMPQASDSDKLD------GLNTHIGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYIT 240 Query: 228 SNTRRLNGWFYDIFNIPLE--------------------------DWKRYQIDTRTVEGI 261 + +L+G D+ + + + + I Sbjct: 241 TAGYQLDGPLVDMVEMGRDILDGVIEDERTFYYLASLDDDDDMNDSSNWIKANPNLGVSI 300 Query: 262 DSGFHEGIISRYGLDSDV---ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD-LYAP 317 D + + + F + +FI + +++ A+DD P Sbjct: 301 DLEEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYQTLQKNNDVIALDDLEGRP 360 Query: 318 LIMGCDIAGEGGDKTV----VVFRRGNIIEHIFDWSAKLIQETNQEGCP 362 +G D++ D T G + W K E + E P Sbjct: 361 CTIGYDLSET-EDFTAACATFALDNGKVAVLSHSWIPKHKVEYSNEKIP 408 >gi|326564604|gb|EGE14825.1| terminase [Moraxella catarrhalis 46P47B1] Length = 564 Score = 49.9 bits (117), Expect = 7e-04, Method: Composition-based stats. Identities = 26/306 (8%), Positives = 67/306 (21%), Gaps = 54/306 (17%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ+ K I R GK+ + A + ++ G Sbjct: 83 EPWQIFACCLPFGWIKRATG--FRRYTKILIFVCRKNGKSAIAAGIGNYMFCADGEFGAE 140 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 + A +E Q + ++ ++ + + + + + Sbjct: 141 VYSGATTEKQAWEVFRPAKIMVERTKALKDFYSVEVNASNMARLADGSRFEPIIGKPGD- 199 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPNRFWIMTS 228 + DE + + ++ ++T+ Sbjct: 200 -------------------GSSPSCAIIDEYHEHKNNDLYDTMETGMGAREQPIMLVITT 240 Query: 229 NTRRLNGWFYDIFNIPL----------------------EDWKRYQIDTRTVEGIDSGFH 266 + G + + +DW + +D Sbjct: 241 AGSSIGGACHQMVRDAEKMLDGVMDIPDLWAVLYGMDKDDDWTSEIALKKANPNMDISVS 300 Query: 267 EGIISRYGLD-------SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319 + D + R + L ++ + + P Sbjct: 301 AEFLQARQRDAKMSAAKQAIFRTKHLNEWVGAKNAWLNMAKWANAPERLPLSALTGRPCF 360 Query: 320 MGCDIA 325 +G D+A Sbjct: 361 IGLDLA 366 >gi|282911089|ref|ZP_06318891.1| terminase large subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282324784|gb|EFB55094.1| terminase large subunit [Staphylococcus aureus subsp. aureus WBG10049] Length = 566 Score = 49.9 bits (117), Expect = 7e-04, Method: Composition-based stats. Identities = 52/349 (14%), Positives = 93/349 (26%), Gaps = 62/349 (17%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTR--PGM 108 WQ + ++ H F+ A I GR GKTT + + + +S G Sbjct: 84 QPWQHFIIGSLFGWVHKETKLR---RFREALIFMGRKNGKTTTISGVANYGVSQDGENGA 140 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 I +AN Q + L+ E + P L + D Sbjct: 141 EIHLLANVMKQAR-ILFDESKAMIKASPILSR-------------EFRPLRDEIHYDKTI 186 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMT 227 I + ++ D DE D + I +T Sbjct: 187 SKIMPQASDSDKLDGLNTHMG------IFDEIHEFKDYKLISVIKNSRAARLQPLLIYIT 240 Query: 228 SNTRRLNGWFYDIFNIPLE--------------------------DWKRYQIDTRTVEGI 261 + +L+G D+ + + + + I Sbjct: 241 TAGYQLDGPLVDMVEMGRDILDGVIEDERTFYYLASLDDDDDMNDSSNWIKANPNLGVSI 300 Query: 262 DSGFHEGIISRYGLDSDV---ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD-LYAP 317 D + + + F + +FI + +++ A+DD P Sbjct: 301 DLEEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYQTLQKNNDVIALDDLEGRP 360 Query: 318 LIMGCDIAGEGGDKTV----VVFRRGNIIEHIFDWSAKLIQETNQEGCP 362 +G D++ D T G + W K E + E P Sbjct: 361 CTIGYDLSET-EDFTAACATFALDNGKVAVLSHSWIPKHKVEYSNEKIP 408 >gi|312438081|gb|ADQ77152.1| terminase large subunit [Staphylococcus aureus subsp. aureus TCH60] Length = 563 Score = 49.9 bits (117), Expect = 7e-04, Method: Composition-based stats. Identities = 52/349 (14%), Positives = 93/349 (26%), Gaps = 62/349 (17%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTR--PGM 108 WQ + ++ H F+ A I GR GKTT + + + +S G Sbjct: 81 QPWQHFIIGSLFGWVHKETKLR---RFREALIFMGRKNGKTTTISGVANYGVSQDGENGA 137 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 I +AN Q + L+ E + P L + D Sbjct: 138 EIHLLANVMKQAR-ILFDESKAMIKASPILSR-------------EFRPLRDEIHYDKTI 183 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMT 227 I + ++ D DE D + I +T Sbjct: 184 SKIMPQASDSDKLDGLNTHMG------IFDEIHEFKDYKLISVIKNSRAARLQPLLIYIT 237 Query: 228 SNTRRLNGWFYDIFNIPLE--------------------------DWKRYQIDTRTVEGI 261 + +L+G D+ + + + + I Sbjct: 238 TAGYQLDGPLVDMVEMGRDILDGVIEDERTFYYLASLDDDDDMNDSSNWIKANPNLGVSI 297 Query: 262 DSGFHEGIISRYGLDSDV---ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD-LYAP 317 D + + + F + +FI + +++ A+DD P Sbjct: 298 DLEEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYQTLQKNNDVIALDDLEGRP 357 Query: 318 LIMGCDIAGEGGDKTV----VVFRRGNIIEHIFDWSAKLIQETNQEGCP 362 +G D++ D T G + W K E + E P Sbjct: 358 CTIGYDLSET-EDFTAACATFALDNGKVAVLSHSWIPKHKVEYSNEKIP 405 >gi|290976692|ref|XP_002671073.1| predicted protein [Naegleria gruberi] gi|284084639|gb|EFC38329.1| predicted protein [Naegleria gruberi] Length = 998 Score = 49.9 bits (117), Expect = 7e-04, Method: Composition-based stats. Identities = 25/185 (13%), Positives = 52/185 (28%), Gaps = 13/185 (7%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAG-----RGIGKTTLNAWMMLWLISTRPGMSI 110 + E + H V F ++ G G+GKT + + L T+ + Sbjct: 305 ADIFEKLYSHQQIGVKWLVERHFASSLKGGLLADDMGLGKTIQISSFIHGLFLTQKASRV 364 Query: 111 ICIANSETQLKNTLWAEVSKW----LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 + I + E+ KW + + H S + + + E+ Sbjct: 365 LVICP--NSVVGNWQKELEKWGGDQIKGVVIFHQVGKASSTNRKRQGFVKEFEKYAKQGG 422 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGM-AVFNDEASGTPDIINKSILGFFTELNPNRFWI 225 T +T + + ++ DEA + + L + Sbjct: 423 AVMLSTYQTIANHVEYLSKSFSGDKLLDSIIIDEAHKIKNK-DAKCSMALKTLGSASKFG 481 Query: 226 MTSNT 230 +T Sbjct: 482 LTGTP 486 >gi|198424005|ref|XP_002119445.1| PREDICTED: similar to predicted protein [Ciona intestinalis] Length = 2129 Score = 49.9 bits (117), Expect = 7e-04, Method: Composition-based stats. Identities = 23/182 (12%), Positives = 51/182 (28%), Gaps = 25/182 (13%) Query: 40 IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99 K + + +FS + Q + + H I A G GKT + Sbjct: 1259 EKFESVYNFSHFNPIQTQIFHCIYHHDT-----------NVLIGAPTGSGKTVAAELAIF 1307 Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159 ++ T+PG + +A + ++ + W L H+ ++ L+ + + Sbjct: 1308 RMLRTQPGAKAVYVAPLKALVRERM----KDWEKRLKHKLGLKLVELTGDIAPDMRAVAR 1363 Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHN--THGMAVFNDEASGTPDIINKSILGFFTE 217 + I + + + DE + + Sbjct: 1364 ADVIITTPEKW--------DGVSRSWNTRGYVRKVSLLIIDEIHLLGQDRGPVLEVIVSR 1415 Query: 218 LN 219 N Sbjct: 1416 TN 1417 >gi|228966905|ref|ZP_04127946.1| Prophage LambdaBa02, terminase, large subunit [Bacillus thuringiensis serovar sotto str. T04001] gi|228792800|gb|EEM40361.1| Prophage LambdaBa02, terminase, large subunit [Bacillus thuringiensis serovar sotto str. T04001] Length = 555 Score = 49.6 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 64/401 (15%), Positives = 116/401 (28%), Gaps = 70/401 (17%) Query: 3 RLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAV 62 R ++ +K E + + F+ F KG + QP WQ + ++ Sbjct: 26 RHLNDLKKQGTEEFPYIFDEDLAHRPIKFIE-KFCRPSKGNFKQLILQP--WQHFVLGSL 82 Query: 63 DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQL 120 H + GR GKTT+ + + + +S G I +ANS Q Sbjct: 83 FGWVHKETRLRRFKEGLIFV--GRKNGKTTIISGVANYGVSKDGEKGADIPLLANSMKQA 140 Query: 121 KNTLWAEVSKWLSMLP-HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 + L+ E + P + F ++H ++++ Sbjct: 141 R-LLFDESKAMIKASPLLKKHFRTLRDAIHYDKTFSKIEP-------------------- 179 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN---------- 229 + + DE D S++ I + Sbjct: 180 QASDSEKLDGLNTHIGIFDEIHEYKDYKLISVIKNSRGARDQPLLIYITTAGYQLDGPLV 239 Query: 230 ------TRRLNGWFYD----IFNIPLEDWKRYQIDTRT---VEGID-----SGFHEGIIS 271 T LNG F D F L+D K +++ +D S E Sbjct: 240 NYYEQGTDVLNGVFDDDRTFYFLAELDDPKEFEMPEMWVKANPNMDVSIKLSDMIEDWKK 299 Query: 272 RYGLDSDV--ARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLIMGCDIAGEG 328 S+ + F +F+ + I++ R+ D I G D++ + Sbjct: 300 DKRTPSERNDFITKRFNMFVNNNEQSFLDYEIIKKNNKVRDINDFTGKSCIGGFDLS-DS 358 Query: 329 GDKTVVV-----FRRGNIIEHIFDW--SAKLIQETNQEGCP 362 D T G + W K++ + E P Sbjct: 359 EDFTSACLEFPIIETGEVFVFSHSWVPEKKVLMD--NEKIP 397 >gi|77462906|ref|YP_352410.1| putative terminase large subunit / phage terminase [Rhodobacter sphaeroides 2.4.1] gi|77387324|gb|ABA78509.1| putative terminase large subunit / phage terminase [Rhodobacter sphaeroides 2.4.1] Length = 510 Score = 49.6 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 38/317 (11%), Positives = 82/317 (25%), Gaps = 51/317 (16%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS--TRPGMSI 110 WQ + A+ H + + T+F RG KT+L A + L R Sbjct: 23 PWQERIVRAIYGPRHPDGSRIVKTVFLLV---PRGNRKTSLAAALALLHTLGPERVPAGQ 79 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + A + + + E + + + + ++ + K Sbjct: 80 VIFAACDREQAGIGFREAANIIRA----DKRLVAATRIYDA----------HNSAKKIVF 125 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP-DIINKSILGFFTELNPNRFWIMTSN 229 H DE + +++ ++ + I T+ Sbjct: 126 RAEDVTLSAISSDGGAQHGRTPAFTLIDELHAWKGRDLWEALKSGTAKVADSLTVIATTA 185 Query: 230 TRRLNGWFYDIFNI----------------------PLEDWKRYQIDTRTVEGIDSGF-- 265 R + + + P +DW + G+ GF Sbjct: 186 GRGADTVAAEQYAYALAVARGEIVNPAFLPILFAPEPGDDWTDEATWHKVNPGLRHGFPS 245 Query: 266 ------HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA-MSREAIDDLYAPL 318 D+ R L ++ + + + + + + P Sbjct: 246 LEGLRTLAKEAEGRPSDAYAFRQFNLNEWMANSRDPLFDFDTYDARRFAEDLDELEGLPC 305 Query: 319 IMGCDIAGEGGDKTVVV 335 +G D++ G VV Sbjct: 306 WIGVDLSISGDLSAVVA 322 >gi|51518058|ref|YP_067987.1| BDRF1 [Macacine herpesvirus 4] gi|18025509|gb|AAK95453.1| BDRF1 [Macacine herpesvirus 4] Length = 690 Score = 49.6 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 28/189 (14%), Positives = 56/189 (29%), Gaps = 15/189 (7%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GKT + ++ +IS + I +A+ + ++ E+ L+ Sbjct: 227 PRRHGKTWIVVAIISLIISNLSNVQIGYVAHQKHVAS-AVFTEIIDTLAKN--------- 276 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 E+ +++ I +H T +F DEA+ Sbjct: 277 -----FDAKRVEVNKETSTITFRHSGKISSTVMCATCFNKNSIRGQTFHLLFVDEANFIK 331 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264 +ILGF + + +I + N+ F E D Sbjct: 332 KEALPAILGFMLQKDAKIIFISSVNSADQATSFLYKLKDAQERLLNVVSYVCQEHRQDFD 391 Query: 265 FHEGIISRY 273 + ++S Sbjct: 392 MQDSMVSCP 400 >gi|195436432|ref|XP_002066172.1| GK22219 [Drosophila willistoni] gi|194162257|gb|EDW77158.1| GK22219 [Drosophila willistoni] Length = 1284 Score = 49.6 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 42/157 (26%), Gaps = 7/157 (4%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + G+GKT + A +M P II +A + + +++ ++P Sbjct: 80 NTLVVLPTGLGKTFIAAVLMYNYYRWYPKGKIIFMAPTRPLVSQ----QIAACQKIMPFT 135 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 ++ P EL + + + D + D Sbjct: 136 DQDTVELTGRLPRVKRMELWRTKRVFFATPQVVHSDMLD--QADQSHSFPFGSVKLLVVD 193 Query: 199 EAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 EA + NP + S T Sbjct: 194 EAHRAKGRYAYTQVTESLMAHNPQFRMLALSATPGRT 230 >gi|322507236|gb|ADX02690.1| Putative phage terminase [Acinetobacter baumannii 1656-2] Length = 378 Score = 49.6 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 30/225 (13%), Positives = 60/225 (26%), Gaps = 32/225 (14%) Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A + Q+++ + + + F+ E ++ + Y Sbjct: 3 YFAPTYPQIRDIFFPTIEEV--------AFDWG-----LKTKVYETNKEVDIYYGRQYRT 49 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDE----ASGTPDIINKSILGFFT-ELNPNRFWIM 226 T S E+P T DE A + I+ + I Sbjct: 50 TIICRSMEKPAT---IVGFKIGHALIDELDVMAKVKAQQAWRKIIARMRYKQAGLLNGID 106 Query: 227 TSNTRRLNGWFYDIF-------NIPLEDWKRYQIDTRTVE-GIDSGFHEGIISRYGLDSD 278 + T + Y+ F + + Q T E + + + Y Sbjct: 107 VATTPEGFKFTYEQFVKEANKSEAKRKLYGMIQASTYDNEANLPDDYISSLYESY--PPQ 164 Query: 279 VARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323 + + GQF P ++ + PL++G D Sbjct: 165 LISAYLRGQFVNLTSGAVYP-DFDRVLNHTDEEIKKGEPLLIGMD 208 >gi|296393586|ref|YP_003658470.1| terminase [Segniliparus rotundus DSM 44985] gi|296180733|gb|ADG97639.1| Terminase [Segniliparus rotundus DSM 44985] Length = 498 Score = 49.6 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 44/336 (13%), Positives = 79/336 (23%), Gaps = 64/336 (19%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS-AGRGIGKTTLNAWMMLWLISTRPGMSII 111 WQ + V F+ I+ A R GK+ L + LW R + Sbjct: 45 PWQEWLLTHALE-----VRPDGLPRFRTVIALAARQNGKSLLMIVLALW----RVYVKGG 95 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + + L N+ + W E L+ +E+L K + Sbjct: 96 VVVGTAQDLANS-------------EKAWGEAVELAEGTPELASEVLHVDKTNGKKSLRL 142 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEA--SGTPDIINKSILGFFTELNPNRFWIMTSN 229 + G + DE + D + + + + Sbjct: 143 HSGAQYRIAAASRRGARGFTADLILLDELREHQSFDSWAAVTKTTMARPDAQVWCLSNAG 202 Query: 230 --------------------TRRLNGWFYDIFNIP-LEDWKRYQIDTRTVEGIDSGFHEG 268 D ED + G D Sbjct: 203 DHLSVVLAHLRNIAHRQLDWPDGKPDHVEDQAPDDEAEDDSVGIFEWSAPPGCDPKDRHA 262 Query: 269 IIS-----------------RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311 + V E+L Q+P P + + Sbjct: 263 WAQANPALGVTITERAIASAYATDPAPVFAAEVLCQWPLTVTPGPFPPGSWDSTRDDNST 322 Query: 312 DDLYAPLIMGCDIAGEGGDKT-VVVFRRGNIIEHIF 346 +P ++G D+A T + RR + + H+ Sbjct: 323 IATDSPRVVGLDMAWNRSTVTLALAGRRDDGMAHVE 358 >gi|167634795|ref|ZP_02393114.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus anthracis str. A0442] gi|170688565|ref|ZP_02879771.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus anthracis str. A0465] gi|254686857|ref|ZP_05150715.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus anthracis str. CNEVA-9066] gi|254744507|ref|ZP_05202186.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus anthracis str. Kruger B] gi|167529869|gb|EDR92617.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus anthracis str. A0442] gi|170667425|gb|EDT18182.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus anthracis str. A0465] Length = 562 Score = 49.6 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 60/205 (29%), Gaps = 26/205 (12%) Query: 36 FPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95 F KGK + WQ F+ ++ H ++ R GK+TL++ Sbjct: 65 FCKHSKGKWVGKPIDLELWQKAFIGSLFGFIHKIDGTRKYREALLIVA--RKNGKSTLSS 122 Query: 96 WMMLWL--ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153 + L+L G + +A E Q K +W+E + + P LS Sbjct: 123 GICLYLQIADGEGGAEVYAVATKEKQAK-IVWSEAKRMVKKSPV--------LSKRIKAL 173 Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK--SI 211 EL + T H DE D + Sbjct: 174 VKELNADFNDSTFQPVGSDSDTLDGLN------VHGAS-----LDEIHAWKDKNLYDVIV 222 Query: 212 LGFFTELNPNRFWIMTSNTRRLNGW 236 G P I T+ T R + + Sbjct: 223 DGTSAREQPLILMITTAGTVRESVY 247 >gi|120603805|ref|YP_968205.1| hypothetical protein Dvul_2767 [Desulfovibrio vulgaris DP4] gi|120564034|gb|ABM29778.1| protein of unknown function DUF264 [Desulfovibrio vulgaris DP4] Length = 599 Score = 49.6 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 40/341 (11%), Positives = 76/341 (22%), Gaps = 67/341 (19%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P +Q + + + + + + A R IG T A I Sbjct: 148 PALFQEKLHARYFDY-QRQLRAALTHRNRMLLKA-RQIGATWYFAQEAFENACLTGDNQI 205 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 A +V + M F++ ++ + ++ + Sbjct: 206 FLSATKAQS-------QVFRNYIMQIAGEAFDIS-------LSGNPMVLHTAHGKAELHF 251 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTS 228 ++ + S H V+ DE + K G R T Sbjct: 252 LSNSSRSA------QSYHGH----VYIDEFFWITKFKELFKVATGMAAHKRWRRTLFSTP 301 Query: 229 N-------TRRLNGWFYDIFNIPLEDWKRYQI---------------DTRTVEGIDSGFH 266 + F F+ P + E Sbjct: 302 SAITHEAYPLWSGETFQRRFSKPRPWPDAEAMRAGVLCPDTYFRNIITLADAEAGGCDLF 361 Query: 267 EGIISRYGLDSDVARIEILGQFPQQEVNNF---------IPHNYIEEAMSREAIDDLYAP 317 + + + R +F F + ++ + P Sbjct: 362 DVAQLKLEYTPEEFRQLFGCEFIDDTQGVFRLAQLEACMVDPADWQDVRQGDPHPVGNLP 421 Query: 318 LIMGCDIAGEGGDKTVVVF-----RRGNIIEHI--FDWSAK 351 + G D A G D + R G I I W + Sbjct: 422 VWGGYDPARSGDDAS-FAVLLPDLRDGGGIRCIERHKWKGR 461 >gi|154298118|ref|XP_001549483.1| helicase [Botryotinia fuckeliana B05.10] gi|150858210|gb|EDN33402.1| helicase [Botryotinia fuckeliana B05.10] Length = 544 Score = 49.6 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 27/240 (11%), Positives = 57/240 (23%), Gaps = 25/240 (10%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P WQ + ++ +D + + A GKT ++ + M ++ + Sbjct: 164 PDGWQRDVLDQLDANKS------------VFVVAPTSAGKTFISFYAMEQILRADNDGVL 211 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + +A ++ + K + F + + S G Sbjct: 212 VYVAPTKALVNQIAAEVQGKHYRICRFSKRFPQAGKGVWAIHTRDYRVNNSTGCQILVTV 271 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM---T 227 P + DE + + L+P + Sbjct: 272 PHILQIMLLSPTNAKSW-APRVKRIIFDEIHSIGQSEDGVVWEQLLLLSPCPIIALSATV 330 Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287 N + W + + K + TR + E LG Sbjct: 331 GNPEQFADWLGETQKANGSELKMIKHSTRYS---------DLRKFMYEPPKKFNFEGLGD 381 >gi|94988455|ref|YP_596556.1| terminase large subunit [Streptococcus phage 9429.2] gi|94541963|gb|ABF32012.1| terminase large subunit [Streptococcus phage 9429.2] Length = 431 Score = 49.6 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 37/269 (13%), Positives = 74/269 (27%), Gaps = 23/269 (8%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 ++ + RG K+ A + + P +++ I K + + + + L Sbjct: 29 NFYRV-VKGSRGSKKSKTTALNFIVRLLKYPWANLLVIRRYSNTNKQSTYTDFKWACNQL 87 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 H F+ + + + I R +E T + Sbjct: 88 KVTHLFKFNES------------LPEITVKATGQKILFRGLDDELKITSITVDVGALCWA 135 Query: 196 FNDEASGTPDI-----INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NIPLED 247 + +EA + +SI G + + +T N W +F D Sbjct: 136 WFEEAYQIETEDKFSTVVESIRGSLDAPDFFKQITVTFNPWSERHWLKRVFFDEETKRAD 195 Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307 R E +D Y + ARI G++ E F ++ + Sbjct: 196 TFSGTTTFRVNEWLDDVDKRRYEDLYKTNPRRARIVCDGEWGVAEGLVFDNFEVVDFDVE 255 Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 + G D T++ Sbjct: 256 KTIQRVKETS--AGMDFGFTQDPTTLICV 282 >gi|255928222|gb|ACU41839.1| gp2 [Mycobacterium phage Puhltonio] Length = 595 Score = 49.6 bits (116), Expect = 9e-04, Method: Composition-based stats. Identities = 48/370 (12%), Positives = 86/370 (23%), Gaps = 51/370 (13%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + + S + + + L A+ S K V P L P+ +E Sbjct: 40 LEQAKSWSTEQKHAMLASLRAAKARASMK--VKYAHP-----AELAAALDPNYVVTPAIE 92 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + + +P IS GK+TL A I +A L Sbjct: 93 LISTSIERVLT--SPKQINLEISMPPQEGKSTLAAVATPLRALQHNPHRKIILATYALDL 150 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 T + +W+ + L + L+ + G + Sbjct: 151 AETHSRTMREWIETYGTDVVDPLTGLPVEDKIG----LKLARGANKVTAWSVAGGRGGLV 206 Query: 181 PDT-FVGPHNTHGMAVFND-------EASGT-----PDIINKSILGFFTELNPNRFWIMT 227 + D EA D S+ + + I T Sbjct: 207 AAGIGSRLTGMPADLMIIDDPFKNMMEADSALYRKRVDEWFSSVARTRLAPDASIIMIQT 266 Query: 228 S-NTRRLNG---WFYDIFNIPLEDWKRYQIDTRT-------------VEGIDSGFHEGII 270 + L G W+ I + + Sbjct: 267 RWHPEDLAGKVIAAERSLPRNERTWRVINIPAIAEKGIPDALKREPGTPMVSARDTPEAK 326 Query: 271 SRYGL-----DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325 + G P+ + + EA + Y ++ G D A Sbjct: 327 RNFPKIRREVGERTWYALYQGS-PRNPEGGIFQQKWFDATRLPEAPLNPYTAVV-GIDPA 384 Query: 326 GEG-GDKTVV 334 G GD+ + Sbjct: 385 DSGEGDEAGI 394 >gi|255927526|gb|ACU41148.1| gp2 [Mycobacterium phage Colbert] gi|255928464|gb|ACU42079.1| gp2 [Mycobacterium phage UncleHowie] gi|282721382|gb|ADA83830.1| gp2 [Mycobacterium phage Fang] Length = 595 Score = 49.6 bits (116), Expect = 9e-04, Method: Composition-based stats. Identities = 48/370 (12%), Positives = 86/370 (23%), Gaps = 51/370 (13%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + + S + + + L A+ S K V P L P+ +E Sbjct: 40 LEQAKSWSTEQKHAMLASLRAAKARASMK--VKYAHP-----AELAAALDPNYVVTPAIE 92 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + + +P IS GK+TL A I +A L Sbjct: 93 LISTSIERVLT--SPKQINLEISMPPQEGKSTLAAVATPLRALQHNPHRKIILATYALDL 150 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 T + +W+ + L + L+ + G + Sbjct: 151 AETHSRTMREWIETYGTDVVDPLTGLPVEDKIG----LKLARGANKVTAWSVAGGRGGLV 206 Query: 181 PDT-FVGPHNTHGMAVFND-------EASGT-----PDIINKSILGFFTELNPNRFWIMT 227 + D EA D S+ + + I T Sbjct: 207 AAGIGSRLTGMPADLMIIDDPFKNMMEADSALYRKRVDEWFSSVARTRLAPDASIIMIQT 266 Query: 228 S-NTRRLNG---WFYDIFNIPLEDWKRYQIDTRT-------------VEGIDSGFHEGII 270 + L G W+ I + + Sbjct: 267 RWHPEDLAGKVIAAERSLPRNERTWRVINIPAIAEKGIPDALKREPGTPMVSARDTPEAK 326 Query: 271 SRYGL-----DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325 + G P+ + + EA + Y ++ G D A Sbjct: 327 RNFPKIRREVGERTWYALYQGS-PRNPEGGIFQQKWFDATRLPEAPLNPYTAVV-GIDPA 384 Query: 326 GEG-GDKTVV 334 G GD+ + Sbjct: 385 DSGEGDEAGI 394 >gi|190150084|ref|YP_001968609.1| terminase large subunit [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263417|ref|ZP_07545033.1| Phage D3 terminase-like protein [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189915215|gb|ACE61467.1| Putative terminase large subunit [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871295|gb|EFN03023.1| Phage D3 terminase-like protein [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 556 Score = 49.6 bits (116), Expect = 9e-04, Method: Composition-based stats. Identities = 42/344 (12%), Positives = 77/344 (22%), Gaps = 54/344 (15%) Query: 22 AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81 +E V F F +KG + WQ+ + + Sbjct: 42 SEIVERFLKFSKV--CPHVKGHLRGKAIELSDWQVFLFANILGFKYRATGLRKYRSAYIQ 99 Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 ++ R K+T+ A + W + G I A ++ Sbjct: 100 VA--RKNAKSTVAAVLANWFLVMEKGQQDIYTAAVSRDQARIVF---------------- 141 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + + L ++ K + T+ DE Sbjct: 142 ---DDARQMAVLSKPLKKRVQIQQHKMIYPQNNSLMRPLAAKSSTIEGTNPSLAIVDEYH 198 Query: 202 GTPDIINKSILGFFTELNPNRFWIMT----SNTRRLNGWFYDIF---------------- 241 PD S L P SNT YD Sbjct: 199 LHPDNSVYSALELGQGARPEGLLFAITTAGSNTISACKQHYDYCCQILDGNEQNESIFIM 258 Query: 242 -------NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF--PQQE 292 N + + + + + I E I++ + +F Sbjct: 259 IFELDDENEVDDPSQWIKANPNIGKSIPFQDFENTIAKARGIPSEWVEMLTKRFNVWCNG 318 Query: 293 VNNFIPHNYIEEAMSREAIDD-LYAPLIMGCDIAGEGGDKTVVV 335 ++ + D MG D++ D T + Sbjct: 319 STPWLGEGNWKACERIYQETDLHGKECYMGLDLSST-NDLTSIC 361 >gi|15674984|ref|NP_269158.1| putative terminase, large subunit [Streptococcus phage 370.3] gi|13622131|gb|AAK33879.1| putative terminase, large subunit - phage associated [Streptococcus phage 370.3] Length = 429 Score = 49.6 bits (116), Expect = 9e-04, Method: Composition-based stats. Identities = 37/269 (13%), Positives = 74/269 (27%), Gaps = 23/269 (8%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 ++ + RG K+ A + + P +++ I K + + + + L Sbjct: 27 NFYRV-VKGSRGSKKSKTTALNFIVRLLKYPWANLLVIRRYSNTNKQSTYTDFKWACNQL 85 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 H F+ + + + I R +E T + Sbjct: 86 KVTHLFKFNES------------LPEITVKATGQKILFRGLDDELKITSITVDVGALCWA 133 Query: 196 FNDEASGTPDI-----INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NIPLED 247 + +EA + +SI G + + +T N W +F D Sbjct: 134 WFEEAYQIETEDKFSTVVESIRGSLDAPDFFKQITVTFNPWSERHWLKRVFFDEETKRAD 193 Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307 R E +D Y + ARI G++ E F ++ + Sbjct: 194 TFSGTTTFRVNEWLDDVDKRRYEDLYKTNPRRARIVCDGEWGVAEGLVFDNFEVVDFDVE 253 Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 + G D T++ Sbjct: 254 KTIQRVKETS--AGMDFGFTQDPTTLICV 280 >gi|328477377|gb|EGF47512.1| phage terminase [Lactobacillus rhamnosus MTCC 5462] Length = 465 Score = 49.6 bits (116), Expect = 9e-04, Method: Composition-based stats. Identities = 43/329 (13%), Positives = 77/329 (23%), Gaps = 62/329 (18%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 WQ+E + + ++ + R GK + A L+ + G ++ Sbjct: 40 QPWQVELAKHIFAVNQDHLWTHTKFGYSL----PRRNGKNEVVAIRELYAL--FDGEQVL 93 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A+ T + W + + L S + S + Sbjct: 94 HTAHRTTTSH-SAWERLLRILDK----------SNVDYDSLKAVGRERIELPDTGGRVEF 142 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 RT + + DEA ++ ++ + Sbjct: 143 RTRTSTGGL--------GEGFDLLIIDEAQEYTTDQESALKYVVSDSKNPQTIFC-GTPP 193 Query: 232 RL---------------------NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGII 270 GW + R I Sbjct: 194 TPLSSGTVFVNLRNNVLEHKVANAGWAEWGVEDESDVHDRELWYRCNPSLGTIMTERSIQ 253 Query: 271 SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGD 330 G D I+ LG + + + I N + R L L +G G D Sbjct: 254 DEVGDDKIDFNIQRLGLWIKYNQKSAISANEWAQLKVRSL-PVLRGQLFVGI---KYGND 309 Query: 331 KTVVVFRRGNIIE---HIFDWSAKLIQET 356 GN + + S K+ ET Sbjct: 310 --------GNNVSMSVAVRTLSKKVFVET 330 >gi|290891543|ref|ZP_06554600.1| hypothetical protein AWRIB429_1990 [Oenococcus oeni AWRIB429] gi|290478796|gb|EFD87463.1| hypothetical protein AWRIB429_1990 [Oenococcus oeni AWRIB429] Length = 636 Score = 49.6 bits (116), Expect = 9e-04, Method: Composition-based stats. Identities = 43/372 (11%), Positives = 101/372 (27%), Gaps = 57/372 (15%) Query: 15 LHEMLMHAECVLSFKNFVMRF-----FPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSN 69 L ++ F V F ++ WQ + + Sbjct: 57 LQDLKRTGNEDFPFNYEVKHVKRLMKFSKMAPNVDTMEPTKLMEWQKFMLSLL---IGWR 113 Query: 70 VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129 + IS GRG GKT + A +M + + + ++ L + ++ Sbjct: 114 NKEGGKRFSRAIISVGRGQGKTYMLAILMAYSFF---------VESRGLSNQDFLVSSIN 164 Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI--TCRTYSEERPDTFVGP 187 + + + M ++ + W + + + + + + Sbjct: 165 AKQTGKLYGYLKSMINVLRTINPWKNIADKTDLSLQADKIIMRNHNNVIRPISHEAGQYD 224 Query: 188 HNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNT--------------- 230 + H DE + I+K + G N I T+ Sbjct: 225 -SYHFTTAIFDEIGEVKSREKISKIVSGQVKVPNRQFVQISTAYPDPTVPFHEDEKMLQQ 283 Query: 231 -------RRLNGWFYDIFNIPLEDWKRYQIDT----------RTVEGIDSGFHEGIISRY 273 R + + I++ D + + G + + Sbjct: 284 AMEQDFLRDADTYLCLIWSNDSLDETYKPETWVKSNPLLDLASEHDNLMQGLLDKRDNDV 343 Query: 274 GLDS-DVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKT 332 + + + L + ++++++ +E+A+ E +G D + D T Sbjct: 344 LTGAVHDFQCKNLNMWLSSDIDSYLNLADVEKAIVPEFNI-YGQRCYVGVDYSMS-SDNT 401 Query: 333 VVVFRRGNIIEH 344 V F + E Sbjct: 402 AVAFVYPYVSEE 413 >gi|259908703|ref|YP_002649059.1| Putative phage terminase, large subunit [Erwinia pyrifoliae Ep1/96] gi|224964325|emb|CAX55834.1| Putative phage terminase, large subunit [Erwinia pyrifoliae Ep1/96] Length = 470 Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 26/288 (9%), Positives = 69/288 (23%), Gaps = 50/288 (17%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 I +G+G GK+ L + L+L+ P + A + Q L+ + + P Sbjct: 4 IESGKGSGKSPLAGGVGLYLLMADKEPRAEVYAAATKKDQAM-ILFRDAVTMVDQSP--- 59 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + G++ + + + G DE Sbjct: 60 ------------ALAKRITKSGTGLNVWNLAFLQTGSFFKPISSDDGQSGPRPHGALIDE 107 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTR-RLNGWFYDIFNIPL------------- 245 ++ T+ + +N+ ++ Sbjct: 108 VHEHKTNAVVEMMRAGTKGRRQALMFLITNSGHDKTSVCFEYHEYGRKVAAGDLEDDSFF 167 Query: 246 --------------EDWKRYQIDTRTVEGIDSGFHEG---IISRYGLDSDVARIEILGQF 288 ++ + + + + + + R Q+ Sbjct: 168 SFICSLDEGDDPFKDETCWGKANPSLGQTFTAKYLREQVTQARGMPSKESIVRRLNFCQW 227 Query: 289 PQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 + ++ + + G D++G D T + Sbjct: 228 VESADPWIDSDTWMNCEQDFDPDELAGEECYGGLDLSGS-RDLTALAL 274 >gi|78213224|ref|YP_382003.1| hypothetical protein Syncc9605_1699 [Synechococcus sp. CC9605] gi|78197683|gb|ABB35448.1| hypothetical protein Syncc9605_1699 [Synechococcus sp. CC9605] Length = 524 Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 37/273 (13%), Positives = 77/273 (28%), Gaps = 45/273 (16%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ + V N ++ GRG GK+ L W++ + + Sbjct: 13 PWQRKVAGLVQSVDELNT---------LVLAGGRGGGKSILLIWLIGFFA--------LV 55 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 S + + + L+ L Q + G ++ + + T Sbjct: 56 SGESFNAV------LIRRDLAGLSKLEDLLYQQVPTLMPGSKYFKAKRQWRLSNG---GT 106 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASG--TPDIINKSILGFF-TELNPNRFWIMTSN 229 R + D F +F DE P ++ ++ T+ +I T+N Sbjct: 107 LRLIHMDAGDAFNKIQGEDLSHIFWDELGQEADPQVVLRARSSMRTTDPTVVPKFIATAN 166 Query: 230 TRRLNGWFYDIFNIPLEDWK--------------RYQIDTRTVEGI--DSGFHEGIISRY 273 W+ + + + R + + + + + Sbjct: 167 PLGPGSWWIRDYVVTKALPNRIFNCEFFGAQPAVWIKSTLRDNPYLSNPDQYEQELRASC 226 Query: 274 GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306 D E+LG++ Q F ++ M Sbjct: 227 FGDESKIAAEVLGEWGQVTAGFFGSALSLDRNM 259 >gi|307275425|ref|ZP_07556567.1| phage uncharacterized protein [Enterococcus faecalis TX2134] gi|306507813|gb|EFM76941.1| phage uncharacterized protein [Enterococcus faecalis TX2134] Length = 418 Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 84/281 (29%), Gaps = 34/281 (12%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + A RG KTT A + L+ P +II + ++T + E+ ++ + +F Sbjct: 48 LLAHRGSFKTTTLAIAIALLMVLFPNKNIIFLRKTDTDV-----VEIILQVAKVLSSKYF 102 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + +L+ L E + ID+ T + T + H V D+ Sbjct: 103 KTLVFALYGVEL-VLLKETTTEIDTNLKTSSRGTSQLLGMGIYASLTGKHADIVITDDIV 161 Query: 202 GTPDIINKS--------ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253 D ++++ N +I T + + Sbjct: 162 NIKDRVSRAEREKTKLQYQELQNVKNRGGRFINTGTPWHKEDAISKM-------PNVKKF 214 Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 D ID + + + + + + + F YI+ + I + Sbjct: 215 DCYETGLIDKEQRKAL--QQSMTPSLFAANYELKHIADSESLFTAPTYID---NTNLIYN 269 Query: 314 LYAPLIMGCDIAGEGGDKTVVVFR----RGNIIEHIFDWSA 350 + D A GGD T G II W Sbjct: 270 G----VAHIDAAYGGGDSTAFTIFKEQKDGTIIGFGKKWQK 306 >gi|322435572|ref|YP_004217784.1| Terminase [Acidobacterium sp. MP5ACTX9] gi|321163299|gb|ADW69004.1| Terminase [Acidobacterium sp. MP5ACTX9] Length = 555 Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 24/187 (12%), Positives = 47/187 (25%), Gaps = 29/187 (15%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS-AGRGIGKTTLNAWMMLWLISTRPGMS- 109 WQ + H F+ R GK+ L+A + LW++ Sbjct: 80 QPWQCFLLACTFGWVHKTNGLR---RFRTVYLYVPRKNGKSFLSAVIGLWMLMFDGEQQA 136 Query: 110 -IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 + C A + Q ++ + + F ++L+ Sbjct: 137 EVYCGATTLPQA-EYVFKPAQQIIRKCAGLQTFGAKNLA--------------------S 175 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 + + S P + DEA + I + T + + Sbjct: 176 AIVFPASESRMSAVIGQPPDGSSPSCALLDEAHEWSNDIL--MSTMQTGMGARLQPLTLV 233 Query: 229 NTRRLNG 235 T Sbjct: 234 TTTAGYN 240 >gi|190573927|ref|YP_001971772.1| putative DNA packaging protein gp17 [Stenotrophomonas maltophilia K279a] gi|190011849|emb|CAQ45469.1| putative DNA packaging protein gp17 (terminase) [Stenotrophomonas maltophilia K279a] Length = 517 Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 32/365 (8%), Positives = 78/365 (21%), Gaps = 87/365 (23%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTI----------FKCAISAGRGIGKTTLNAWMML 99 W+L + + V + A+ + R G TT L Sbjct: 17 GDRWWRLNNLYYITDKFGRRVQFKLNEVQADLDDNLHTLNLALKS-RQHGITTWACIRAL 75 Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159 + + +A++ ++V LP ++ E Sbjct: 76 DMALFKKNTKAGVVAHTAGDAAKFFRSKVLYAYDNLPDWLKKIRPAVRRDMRDGVLE--- 132 Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE----ASGTPDIINKSILGFF 215 + + V + E + P+ + G Sbjct: 133 ---------------LANGSSIEVSVSHRGGTLTFLHISEYGPMCAMYPERAGEVASGAL 177 Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIPLE---------------DWKRYQIDTRTVEG 260 + ++ S G FY+ + +E D++ + Sbjct: 178 NAIASGNIVVIESTAYGAAGDFYERCQMAIELDRQIRAGTAKLTAMDYRFHFYPWFRDPI 237 Query: 261 IDSGFH----------------EGIISRYGLDSDVARIEILGQ----------------F 288 + + + ++ + F Sbjct: 238 NELDPDGVTLTAEDEAYFAKVEAEMNYTLRPEQKAWYVKKAAEQRDKMKREHPSTPEEAF 297 Query: 289 PQQEVNNFIPHNYIEE---AMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR--GNIIE 343 + + + P+ DI D T + F + G ++ Sbjct: 298 QASTEGAYYGKEMASADSSGRITDLPINPQVPIHTFWDIGR--SDATSIWFMQENGPWLD 355 Query: 344 HIFDW 348 + + Sbjct: 356 FVDFY 360 >gi|134038655|gb|ABO48409.1| DNA packaging terminase subunit 1 [Wood mouse herpesvirus] gi|262285074|gb|ACY41102.1| DNA packaging terminase subunit 1 [Wood mouse herpesvirus] Length = 679 Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 26/203 (12%), Positives = 65/203 (32%), Gaps = 18/203 (8%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 +F+ + ++++ I R GKT + ++ L+++ + I +A+ Sbjct: 191 KFLLDMLYFDNTDLLTFLQKSPAFLI--PRRHGKTWIVTAIISMLLTSVDDLHIGYVAHQ 248 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 + + ++ E+S WF +++ + T Sbjct: 249 KH-VSLAVFLEISN-----ILLTWFPRKNIDIKKENGVILYSHPGKK---------SSTL 293 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT-RRLNG 235 +F DEA+ +ILGF + + F+I + N+ + Sbjct: 294 MCATCFNKNSIRGQTFNLLFVDEANFIKKEALPAILGFMLQKDAKIFFISSVNSGEKTTS 353 Query: 236 WFYDIFNIPLEDWKRYQIDTRTV 258 + Y++ + + Sbjct: 354 FLYNLKDANEKMVNVVSYVCSEH 376 >gi|320532097|ref|ZP_08032978.1| hypothetical protein HMPREF9057_00846 [Actinomyces sp. oral taxon 171 str. F0337] gi|320135702|gb|EFW27769.1| hypothetical protein HMPREF9057_00846 [Actinomyces sp. oral taxon 171 str. F0337] Length = 370 Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 53/175 (30%), Gaps = 12/175 (6%) Query: 60 EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119 ++ S + I+ RG+GKT + + S R ++ + Sbjct: 21 RVIEEFLESLDDGPGAPGLLELITGARGVGKTVMLTAL---GDSARERGWVVIDETAREG 77 Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 L + L AE ++ LS L + + SLSL + + R ++ Sbjct: 78 LMDRLAAEFTRQLSQLAGKERSRLTSLSLSTPLGGGSATLEHAPTPEPSWRQKARALTQW 137 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF---FTELNPNRFWIMTSNTR 231 + H T + DE P +++ +M + Sbjct: 138 LAE-----HGTGLLLTI-DEVHAIPREELRALSAEVQHLIREGAPIGLLMAGLPK 186 >gi|257088841|ref|ZP_05583202.1| predicted protein [Enterococcus faecalis CH188] gi|256997653|gb|EEU84173.1| predicted protein [Enterococcus faecalis CH188] gi|315160590|gb|EFU04607.1| phage uncharacterized protein [Enterococcus faecalis TX0645] gi|315579436|gb|EFU91627.1| phage uncharacterized protein [Enterococcus faecalis TX0630] Length = 418 Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 42/281 (14%), Positives = 79/281 (28%), Gaps = 34/281 (12%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + A RG KTT A + L+ P +II + ++T + E+ ++ + +F Sbjct: 48 LLAHRGSFKTTTLAIAIALLMVLFPNKNIIFLRKTDTDV-----VEIILQVAKVLSSKYF 102 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + +L+ + L E + ID+ T + T + H V D+ Sbjct: 103 KTLVFALY-NVELVLLKETTTEIDTNLKTSSRGTSQLLGMGIYASLTGKHADIVITDDIV 161 Query: 202 GTPDIINKS--------ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253 D ++++ N +I T + + Sbjct: 162 NIKDRVSRAEREKTKLQYQELQNVKNRAGRFINTGTPWHKEDAISKM-------PNVKKF 214 Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 D ID + + A E+ + + + + Sbjct: 215 DCYETGLIDKEQRKALQQSMTPSLFAANYELK---HIADSESLFTAPTYTDNTNLIYNGV 271 Query: 314 LYAPLIMGCDIAGEGGDKTVVVFR----RGNIIEHIFDWSA 350 + D A G D T G II W Sbjct: 272 AH------IDAAYGGDDSTAFTIFKEQKDGTIIGFGKKWQK 306 >gi|327189474|gb|EGE56634.1| putative terminase large subunit protein [Rhizobium etli CNPAF512] Length = 523 Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 31/267 (11%), Positives = 64/267 (23%), Gaps = 29/267 (10%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 + R +G TT ML + IA++ ++ ++ LP Sbjct: 55 VLLKARQLGLTTFIQIFMLDACVFNRDIRAGTIAHTLGDVQTIFRDKIKYPYDNLPEG-- 112 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + + + + + + + T H + + Sbjct: 113 -------IRNAVPVVRTNQTELLLANNSSIRVGTSLR---SGTLQYLHISEYGKL----C 158 Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL-----------EDWK 249 + PD + G + + + S G FY + D+K Sbjct: 159 AKYPDKAREVRTGALNTVQAGQLVFVESTAEGQEGHFYSLCEDAQVKHRQALELTELDFK 218 Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA-MSR 308 + IIS E + ++ I+ M R Sbjct: 219 FHFFPWWKEPHYAIAPEGVIISDAFAKYFRELAEQGIDLTAGQKAWYVKKAEIQLGDMKR 278 Query: 309 EAIDDLYAPLIMGCDIAGEGGDKTVVV 335 E + A D+ + Sbjct: 279 EYPSTPAEAFEASVEGAYY-ADQMAIA 304 >gi|323947379|gb|EGB43385.1| phage terminase large [Escherichia coli H120] Length = 634 Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 27/276 (9%), Positives = 72/276 (26%), Gaps = 34/276 (12%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 H +Q M+A+ K +GKT + ++ I++ P + Sbjct: 52 HPFQRGMMDAITE-----------DRRKIVFKCSAQLGKTMILNGIIFHRIASNPTNIGV 100 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 +N E++ W++ + +++ + + ++ S Sbjct: 101 LQSNV---------RELNSWIAG---KVKPVLEATPELKAMITDKSDRNAVNNSSIIQLR 148 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD----IINKSILGFFTELNPNRFWIMT 227 ++ + DE + + T + ++ Sbjct: 149 NGSFMYFMSLNSPSHLRGKTLPLIILDEVDAADESDEGNPIQLAEQRATTFGEDARIVIA 208 Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI----DSGFHEGIISRYGLDSDVARIE 283 S +G + + + + + + F I+ L + + Sbjct: 209 STPTARDGAINQQWELSDKRKYHVVCQHCGHKHVMEWSNVHFDWHTINGKSLPNPDTAVY 268 Query: 284 ILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319 P+ E + A + A +I Sbjct: 269 RC---PECETDWTEGDRLRAVAKGEWVATEPNAEVI 301 >gi|120599287|ref|YP_963861.1| phage terminase [Shewanella sp. W3-18-1] gi|120559380|gb|ABM25307.1| phage Terminase [Shewanella sp. W3-18-1] Length = 581 Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 37/344 (10%), Positives = 88/344 (25%), Gaps = 58/344 (16%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ + ++ + F+ + +G+G GK+ L A + L+ + Sbjct: 91 DWQAFIVGSLF----GWKDADGTRRFRMCYVESGKGSGKSPLAAGIGLYGLVADGEASAE 146 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I A + Q L+ + ++ P + L + G + Sbjct: 147 IYAAATKKDQAM-ILFRDAVSMVNQSP---------------QLSSRLKKSGTGQSVWNL 190 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 + + G DE + ++ T+ M +N Sbjct: 191 AYLAKNSFFRPISSDNGQSGPRPHMALIDEVHEHKNNNVVEMMRAGTKGRKQALIFMITN 250 Query: 230 ----------------------TRRLNGWFYDIFNIPL------EDWKRYQIDTRTVEGI 261 T+ + +F I ++ ++ + + Sbjct: 251 SGHDRTSVCYSYHEYGKAICAGTKEDDSFFAFICSLDEGDDPINDESCWQKANPSLGHTF 310 Query: 262 DSGFHEG---IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318 + + R Q+ +++ + + Sbjct: 311 THKYLREQVTQAKGMPAKESIVRRLNFCQWVDSASPWLSADTWMDCEDDFDISELYGEEC 370 Query: 319 IMGCDIAGEGGDKT--VVVFRRGNIIEHIFDWSAKLIQETNQEG 360 G D++G D T + F R + + W+ K + Sbjct: 371 YGGLDLSGT-RDLTSLALYFPRVKTLL-VEFWTPKDTLLDRERT 412 >gi|304360664|ref|YP_003856795.1| putative terminase large subunit [Clostridium phage phiCTP1] gi|302495523|gb|ADL40303.1| putative terminase large subunit [Clostridium phage phiCTP1] Length = 472 Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 31/281 (11%), Positives = 70/281 (24%), Gaps = 27/281 (9%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA-WMMLWLISTRPGMS 109 P +W ++ + V + GKT + + W + + Sbjct: 19 PFKWSPPSLKQLKVLSWWMQGSPYQDCDAIICDGAIRSGKTVIMVLSYVNWASANFTDET 78 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 + + + + + K L L + ++ ++S + S + Sbjct: 79 FAICSKTIGAFRRNVLVPLKKMLIDLG----YIIEDHRADNLITVIYKDDKSGKLISNDF 134 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 + + + VF DE + P+ + ++ N Sbjct: 135 YVFG----GKDEASQDLIQGITLAGVFFDEVALMPESFVSQATARCSVDGSKLWFNC--N 188 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDT--RTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287 WFY + + ++ + + +Y + ILGQ Sbjct: 189 PEGPFHWFYVKYIKKAKRRNALRLHFMMDDNPSLTPRILDRYKKQYSG--VFYKRFILGQ 246 Query: 288 FPQQEVNNFIPHNYIEEAMSREAIDDL-----YAPLIMGCD 323 + Q R Y + CD Sbjct: 247 WV-QAEGIVYSM------FDRNVNVVPTKTRNYEAFYVSCD 280 >gi|300122655|emb|CBK23222.2| unnamed protein product [Blastocystis hominis] Length = 422 Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 49/181 (27%), Gaps = 11/181 (6%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR-GIGKTTLNAWMMLWLISTRPGMSIICI 113 Q + + + N AI G G GKTT+ + +++ + R S+ Sbjct: 22 QKLIKQCNAEQQQAILMCFNSND--IAILRGYPGTGKTTVISVIVILCVLLR--KSVFLT 77 Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173 +++ T + N L + + R + + G Y Sbjct: 78 SHTHTAIDNILLKLL--QHDLPILRLGDIAKIHPQTTRYHISNQWSGDFGTYQSIYESKS 135 Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPD----IINKSILGFFTELNPNRFWIMTSN 229 + + P DEA P+ F + + + N Sbjct: 136 IVAATVYTNLQQFPRGKVFDLCIVDEAGQIPEPSILQAFLLSKQVFLVGDSKQLPPIVQN 195 Query: 230 T 230 Sbjct: 196 P 196 >gi|148380306|ref|YP_001254847.1| terminase large subunit [Clostridium botulinum A str. ATCC 3502] gi|148289790|emb|CAL83898.1| terminase large subunit [Clostridium botulinum A str. ATCC 3502] Length = 448 Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 26/251 (10%), Positives = 63/251 (25%), Gaps = 23/251 (9%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRP----GMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 GRG K++ + ++ I + + I + L+ +++ ++ + ML Sbjct: 32 KGGRGSTKSSFISIEIVLGIMRDAQEEIYSNGLVIRRVKETLRESVYDQIKWAIYMLGVE 91 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 W + + I R + + ++ + Sbjct: 92 DE------------WDMPESKLRITYKPTGQAILFRGADKVKKLKSTKVSKGWIKYIWYE 139 Query: 199 EASGTPD-IINKSILGFFTELNPNRFWIMTSNTRRLN-GWFYDIFNIPLEDWKRYQIDTR 256 EA + +++ P + N W +D + Sbjct: 140 EADEFENYDKIRNVNQSLMRGGPEFEVFYSFNPPESQRNWTNMEVLEERKDKFVHHSTYL 199 Query: 257 TVE--GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314 TV + F ++ + LG F + + Sbjct: 200 TVPKEWLGEQFVIEAEHLKKVNKTKYDHDYLGAVTGTGGEVFRNVTV---RNITDDEIKV 256 Query: 315 YAPLIMGCDIA 325 + + G D Sbjct: 257 FDHVKNGLDFG 267 >gi|209363587|ref|YP_002268005.1| terminase large subunit [Staphylococcus phage phi2958PVL] gi|208973088|dbj|BAG74404.1| terminase large subunit [Staphylococcus phage phi2958PVL] Length = 453 Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 43/315 (13%), Positives = 82/315 (26%), Gaps = 58/315 (18%) Query: 85 GRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 GR GKTT + + + +S G I +AN Q + L+ E + P Sbjct: 2 GRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKASP------ 54 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 +L + + + + + + + DE Sbjct: 55 -------------KLDKNFRTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHE 101 Query: 203 TPD-IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT---- 257 D + I +T+ +L+G D+ + + D RT Sbjct: 102 FKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVDMVEAGRDTLDQIIEDERTFYYL 161 Query: 258 -----------------------VEGIDSGFHEGIISRYGLDSDV--ARIEILGQFPQQE 292 V E ++ + F + Sbjct: 162 ASLDDDDDINDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFANND 221 Query: 293 VNNFIPHNYIEEAMSR-EAIDDLYAPLIMGCDIAGEGGDKTV----VVFRRGNIIEHIFD 347 +FI + +++ + P +G D++ D T G + Sbjct: 222 EMSFIDYPTLQKNNEIVSLEELEGRPCTIGYDLSET-EDFTAACATFALDNGKVAVLSHS 280 Query: 348 WSAKLIQETNQEGCP 362 W K E + E P Sbjct: 281 WIPKHKVEYSNEKIP 295 >gi|225620876|ref|YP_002722134.1| Phage terminase large subunit [Brachyspira hyodysenteriae WA1] gi|225215696|gb|ACN84430.1| Phage terminase large subunit [Brachyspira hyodysenteriae WA1] Length = 456 Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 22/180 (12%), Positives = 50/180 (27%), Gaps = 20/180 (11%) Query: 61 AVDVHCHSNVNNSNPTIFKCAIS-AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119 + + T + I+ GRG GK+ A +++ + G I+C + Sbjct: 2 NIKFNILKPFEKWANTEKRLKIAFGGRGGGKSESIARILIAKSFEKSG-VILCSREIQKS 60 Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 + + + + + L +F ++ + + E Sbjct: 61 ISYSTYPLLISIIKELNLEKFFNIK--------------RNEIINKITNCKFIFLGIREC 106 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239 + + + F +EA + + WI N R + Y Sbjct: 107 SIEEIKSIY--NVRICFIEEAQTLTQRSYEILEPSIRAEKSE-IWIAF-NPRFETDFIYK 162 >gi|9631219|ref|NP_048000.1| hypothetical protein AtHV3gp24 [Ateline herpesvirus 3] gi|4019255|gb|AAC95553.1| orf29a/b [Ateline herpesvirus 3] Length = 683 Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 24/177 (13%), Positives = 61/177 (34%), Gaps = 16/177 (9%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GKT + ++ LI++ + + +A+ + N+++ E+ L WF + Sbjct: 218 PRRHGKTWIVVAIISMLITSVENLHVGYVAHQKHVA-NSVFTEIINTLQK-----WFPSK 271 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 ++ + + + S +C ++ DEA+ Sbjct: 272 NIDVK-KENGTIIYKIPGKKPSTLMCASCF--------NKNSIRGQTFNLLYIDEANFIK 322 Query: 205 DIINKSILGFFTELNPNRFWIMTSNT-RRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 +ILGF + + +I + N+ + + +++ N + + Sbjct: 323 KDSLPAILGFMLQKDAKLIFISSVNSGDKATSFLFNLKNASEKMLNIVNYICPDHKD 379 >gi|71903662|ref|YP_280465.1| terminase large subunit [Streptococcus pyogenes MGAS6180] gi|71802757|gb|AAX72110.1| terminase large subunit [Streptococcus pyogenes MGAS6180] Length = 437 Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 37/282 (13%), Positives = 80/282 (28%), Gaps = 23/282 (8%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 ++ + RG K+ A + + P +++ I K + + + + L Sbjct: 35 NFYRV-VKGSRGSKKSKTTALNFIVRLLKYPWANLLVIRRYSNTNKQSTYTDFKWACNQL 93 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 H F+ + + + I R +E T + Sbjct: 94 KVTHLFKFNES------------LPEITVKATGQKILFRGLDDELKITSITVDVGLLCWA 141 Query: 196 FNDEASGTPDI-----INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NIPLED 247 + +EA + +SI G + + +T N W +F D Sbjct: 142 WFEEAYQIETEDKFSTVVESIRGSLDAPDFFKQITVTFNPWSERHWLKRVFFDEETKRAD 201 Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307 R E +D Y + ARI G++ E F ++ + Sbjct: 202 TFSGTTTFRVNEWLDDVDKRRYEDLYKTNPRRARIVCDGEWGVAEGLVFDNFEVVDFDVE 261 Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS 349 + G D T++ + + ++ ++ Sbjct: 262 KTIQRVKETS--AGMDFGFTQDPTTLICVAVDLVNKELWLYN 301 >gi|326772022|ref|ZP_08231307.1| conserved hypothetical protein [Actinomyces viscosus C505] gi|326638155|gb|EGE39056.1| conserved hypothetical protein [Actinomyces viscosus C505] Length = 370 Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 53/175 (30%), Gaps = 12/175 (6%) Query: 60 EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119 ++ S + I+ RG+GKT + + S R ++ + Sbjct: 21 RVIEEFLESLDDGPGAPGLLELITGARGVGKTVMLTAL---GDSARERGWVVVDETAREG 77 Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 L + L AE ++ LS L + + SLSL + + R ++ Sbjct: 78 LMDRLAAEFTRQLSQLAGKERSRLTSLSLSTPLGGGSATLEHAPTPEPSWRQKARALTQW 137 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF---FTELNPNRFWIMTSNTR 231 + H T + DE P +++ +M + Sbjct: 138 LAE-----HGTGLLLTI-DEVHAIPREELRALSAEVQHLIREGAPIGLLMAGLPK 186 >gi|229119295|ref|ZP_04248598.1| phage terminase, large subunit [Bacillus cereus Rock1-3] gi|228664161|gb|EEL19699.1| phage terminase, large subunit [Bacillus cereus Rock1-3] Length = 522 Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 33/317 (10%), Positives = 85/317 (26%), Gaps = 42/317 (13%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTR--PGM 108 WQ + + N + + + A + + GKT + +++ + G Sbjct: 24 ESWQKFYFANIYGWQKYNEDGKAVRVIRTAYLQVPKKNGKTIMGGSPVIYAMYGEGVKGA 83 Query: 109 SIICIANSETQLKNTLWAE---VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 AN+ Q +N + + P ++ + ++ + + Sbjct: 84 DCYISANTFEQCQNAAGPIALTIENSPDLRPDTRIYKGKEDTIKSIKYTFVEDDIKYANV 143 Query: 166 SKHYTITCRTYSEERP--------------DTFVGPHN-----THGMAVFNDEASG---- 202 K T + P + + + + + A Sbjct: 144 IKVLTKDNAGNEGKNPYINYFDEVHAQMDREQYDNLRSAQIAQEEPLNIITSTAGKNTGS 203 Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262 I +E + +++M + W + W+ + ++ Sbjct: 204 LGTQIYTYAKEVLSEDKDDSWFMMIYEPNKKFDWTD------RDVWRMVNPNMDIS--VN 255 Query: 263 SGFHEGIISRYGLDS---DVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319 F E +S + L F + + +++ + D + Sbjct: 256 MEFLENAFKEAQNNSFNKAEFLSKHLDVFVNYAET-YFDKDQLDKMLVDYLKDVEGLTCV 314 Query: 320 MGCDIAGEGGDKTVVVF 336 +G D++ D T V Sbjct: 315 VGVDLSRR-TDLTCVSI 330 >gi|74317324|ref|YP_315064.1| ATP-dependent DNA helicase [Thiobacillus denitrificans ATCC 25259] gi|74056819|gb|AAZ97259.1| ATP-dependent DNA helicase [Thiobacillus denitrificans ATCC 25259] Length = 702 Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 35/279 (12%), Positives = 80/279 (28%), Gaps = 26/279 (9%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 + AG G GKT + A + L++ + I + + + + V + L + Sbjct: 45 LLVIAGAGSGKTNVLAHRVAHLVAHGADPAAILLLTFSRRAADEMVRRVERILRQVAAGR 104 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY--SEERPDTFVGPHNTHGMAVFN 197 + +++ + T E+ D + Sbjct: 105 PRLAGAKLAWAGTFHSIGARLLREYAPRIGLDPAFTIHDREDSADLLNLVRHE---LGLA 161 Query: 198 DEASGTPDII-----NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252 D P + + L +R W + + + Y Sbjct: 162 DTGKRFPRKNTCLAIYSAAVNTLAPLGDVL--------QRRYPWCVEWEDELKRLFLAYV 213 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + +D + + +AR E+ +F V+ + N ++ ++ R Sbjct: 214 EAKQAQHVLDYDDLLLYWGQIAGEPTLAR-EMGARFSHILVDEYQDTNALQASIVRALKP 272 Query: 313 DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 D ++ G D + RG + +I D+ + Sbjct: 273 DGRGVTVV-------GDDAQSIYAFRGATVRNILDFPGQ 304 >gi|56692921|ref|YP_164303.1| terminase large subunit [Pseudomonas phage F116] gi|48527507|gb|AAT45882.1| terminase large subunit [Pseudomonas phage F116] Length = 543 Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 43/328 (13%), Positives = 79/328 (24%), Gaps = 62/328 (18%) Query: 40 IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99 +G +P+R Q F+ + + I R +G TTL A M L Sbjct: 55 EEGDSFVLPFKPNRAQKRFIRRLWH--------------RNLILKARQLGFTTLIAIMWL 100 Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159 IA K + F +L + Sbjct: 101 DHALFNGDQRCGIIAQDRDAAKVIF-----------RDKVKFAYDNLPEEIRERFPTAAA 149 Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT----PDIINKSILGFF 215 + + H + R + R T H E PD + + G Sbjct: 150 NADELLFAHNNSSVRVATSMRSGTIHRLH--------VSEFGKICAKYPDKAQEVVTGSI 201 Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIPL-----------EDWKRYQIDTRTVE----- 259 + N ++ S G F+ + I D++ + Sbjct: 202 PAVPTNGILVIESTAEGREGEFFKMVQIAEANHASRKKLTPRDYRMHFYAWWQEPKYRLD 261 Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN--NFI------PHNYIEEAMSREAI 311 + L + +G+ + + + + EE M +E Sbjct: 262 SRTIELTREEHEYFDLVEATVMRD-MGERITIDPDQRAWYVATKRADFSGAEEKMWQEYP 320 Query: 312 DDLYAPLIMGCDIAGEGGDKTVVVFRRG 339 + + D + R G Sbjct: 321 SFPAEAFQISTEGNWYAKDMATLRKRNG 348 >gi|30260628|ref|NP_843005.1| prophage LambdaBa04, terminase, large subunit, putative [Bacillus anthracis str. Ames] gi|47525737|ref|YP_017086.1| prophage lambdaba04, terminase, large subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|49183471|ref|YP_026723.1| prophage LambdaBa04, terminase, large subunit [Bacillus anthracis str. Sterne] gi|65317890|ref|ZP_00390849.1| COG4626: Phage terminase-like protein, large subunit [Bacillus anthracis str. A2012] gi|165870657|ref|ZP_02215310.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus anthracis str. A0488] gi|229602404|ref|YP_002865072.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus anthracis str. A0248] gi|254724931|ref|ZP_05186714.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus anthracis str. A1055] gi|254725936|ref|ZP_05187718.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus anthracis str. A1055] gi|254738918|ref|ZP_05196620.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus anthracis str. Western North America USA6153] gi|254756237|ref|ZP_05208266.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus anthracis str. Vollum] gi|254762056|ref|ZP_05213905.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus anthracis str. Australia 94] gi|30253996|gb|AAP24491.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus phage lambda Ba01] gi|47500885|gb|AAT29561.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|49177398|gb|AAT52774.1| prophage LambdaBa04, terminase, large subunit, putative [Bacillus anthracis str. Sterne] gi|164713491|gb|EDR19015.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus anthracis str. A0488] gi|229266812|gb|ACQ48449.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus anthracis str. A0248] Length = 562 Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 59/205 (28%), Gaps = 26/205 (12%) Query: 36 FPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95 F KGK WQ F+ ++ H ++ R GK+TL++ Sbjct: 65 FCKHSKGKWAGKPIDLELWQKAFIGSLFGFIHKIDGTRKYREALLIVA--RKNGKSTLSS 122 Query: 96 WMMLWL--ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153 + L+L G + +A E Q K +W+E + + P LS Sbjct: 123 GICLYLQIADGEGGAEVYAVATKEKQAK-IVWSEAKRMVKKSPV--------LSKRIKAL 173 Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK--SI 211 EL + T H DE D + Sbjct: 174 VKELNADFNDSTFQPVGSDSDTLDGLN------VHGAS-----LDEIHAWKDKNLYDVIV 222 Query: 212 LGFFTELNPNRFWIMTSNTRRLNGW 236 G P I T+ T R + + Sbjct: 223 DGTSAREQPLILMITTAGTVRESVY 247 >gi|300724761|ref|YP_003714086.1| putative terminase large subunit [Xenorhabdus nematophila ATCC 19061] gi|297631303|emb|CBJ91998.1| putative terminase large subunit [Xenorhabdus nematophila ATCC 19061] Length = 553 Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 27/264 (10%), Positives = 56/264 (21%), Gaps = 28/264 (10%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 WQ + + R K+T+ A + W + G I Sbjct: 70 EPWQQFAFANLFGFKIKATGRRKYRSAYIQV--PRKNAKSTVAAILANWFLVMEQGQQDI 127 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A ++ + S L ++ K Sbjct: 128 YTAAVSRDQARIVF-------------------DDARQMSLLSKPLKKRVTIQQHKVTYP 168 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 + + T+ DE PD S L P + Sbjct: 169 KTNSLLKPLAAKAATIEGTNPSLAVVDEYHLHPDNAVYSALELGMGARPEGILFAITTAG 228 Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL-GQFPQ 290 D+ +++ + +D + I+ Sbjct: 229 SNVISACKQHY----DYCCQILNSEEHNASLFALIYELDDENEIDDESLWIKANPNLNVS 284 Query: 291 QEVNNFIPHNYIEEAMSREAIDDL 314 + + H+ I++A + Sbjct: 285 VDSDAL--HDTIQKARGIPSQWTE 306 >gi|167385831|ref|XP_001737507.1| U5 small nuclear ribonucleoprotein 200 kDa helicase [Entamoeba dispar SAW760] gi|165899662|gb|EDR26206.1| U5 small nuclear ribonucleoprotein 200 kDa helicase, putative [Entamoeba dispar SAW760] Length = 1804 Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 23/192 (11%), Positives = 49/192 (25%), Gaps = 18/192 (9%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + A G GKT ML + P ++ IA + +K + K ++M + Sbjct: 1023 NVIVGAPTGSGKTVAAELCMLKIFRDTPDKKVVYIAPMKALVKEKMSDWKDKLITMGKNI 1082 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + A++ + + + R ++++ V D Sbjct: 1083 VELTGDFTPDSAAIAKADV----ILTTPEKWDGITRLWTKKSYV-------QKVGLVILD 1131 Query: 199 EASGTPDIINKSILGFFTEL-------NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY 251 E + I T + + + + + Sbjct: 1132 EVHLLGEERGPVIEAIVTRTKQINKKLGIQTRICALTTAIANVDDMMNWIGVDKDSVFNF 1191 Query: 252 QIDTRTVEGIDS 263 R V I Sbjct: 1192 HSSLRPVPLIAH 1203 >gi|302671030|ref|YP_003830990.1| PhoH family protein [Butyrivibrio proteoclasticus B316] gi|302395503|gb|ADL34408.1| PhoH family protein [Butyrivibrio proteoclasticus B316] Length = 463 Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 21/178 (11%), Positives = 47/178 (26%), Gaps = 7/178 (3%) Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GMSIICIANSETQLK 121 + + G KT + + L + RP I+ + +Q Sbjct: 242 FLQEALMQPADVAPLVIVKGMAGTAKTFYSLAVGLEKMINRPTGEYRRILICRPN-SQFD 300 Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 + + + + +L E + + K + R + Sbjct: 301 DDIGFLPGDEQEKISPLMRPIIDNLEQLIDSNEEERYKDEKELQGKTDEVFERGIVQCEA 360 Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239 F+ + + DEA G T + I+ + +++ F D Sbjct: 361 LNFIRGRSILKTYLIIDEAQNMTPTQ---AKGIITRAGKDTKIILLGDPNQIDRPFLD 415 >gi|171681273|ref|XP_001905580.1| hypothetical protein [Podospora anserina S mat+] gi|170940595|emb|CAP65823.1| unnamed protein product [Podospora anserina S mat+] Length = 1721 Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 42/131 (32%), Gaps = 10/131 (7%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++L L S P I+ A + + N L +S + P R E++ + Sbjct: 1332 GTGKTETILSIILSLQSHFPDSRILLTAPTHNAVDNVLRRYLSLNPTHPPLRISTEIRKV 1391 Query: 147 SLHPSGWYAELL----------EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 S + + + + K +S + N V Sbjct: 1392 SPDVTPYTLDAMAGIELNTLHSRAETTKAKKRVKAAKIVFSTCIGSSLGLLRNEMFDIVI 1451 Query: 197 NDEASGTPDII 207 DEAS + Sbjct: 1452 IDEASQQTEGC 1462 >gi|197284809|ref|YP_002150681.1| phage terminase, large subunit [Proteus mirabilis HI4320] gi|194682296|emb|CAR42063.1| putative phage terminase, large subunit [Proteus mirabilis HI4320] Length = 577 Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 34/343 (9%), Positives = 79/343 (23%), Gaps = 56/343 (16%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ + ++ F+ + +G+G GK+ + + L+ + P Sbjct: 89 PWQCFVIGSIF----GWKMTDGTRRFRIVYVESGKGSGKSPMAGGVGLYCLVADSEPRAE 144 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 + A + Q L+ + + P + G E + Sbjct: 145 VYAAATKKDQAM-VLFRDAVAMVDQSP-----ALSQRITKSGGTGKEWNLAYLK------ 192 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 T + D DE + ++ T+ M +N Sbjct: 193 --TSSFFRPISSDDGQS--GPRPHCALIDEIHEHKNNTAVEMMRAGTKGRRQALIFMITN 248 Query: 230 TR-RLNGWFYDIFNIPL---------------------------EDWKRYQIDTRTVEGI 261 + YD ++ + + Sbjct: 249 SGHDKTSVCYDYHEYGRKVAEGTIEDDSFFSYICSLDEGDDPFKDESCWGKANPSLGYTF 308 Query: 262 DSGFHEG---IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318 + + R Q+ + +++ + D Sbjct: 309 SDRYLREQVTQARGMPAKESIVRRLNFCQWVDADNPWINSETWMQCENTFTFDDLQGEEC 368 Query: 319 IMGCDIAGEGGDKTVVVF-RRGNIIEHIFDWSAKLIQETNQEG 360 G D++G D T + ++ W+ K + Sbjct: 369 YGGLDLSGT-KDLTALALYFPSLKRLYVEFWTPKDTLLDRAKT 410 >gi|56962313|ref|YP_174038.1| hypothetical protein ABC0537 [Bacillus clausii KSM-K16] gi|56908550|dbj|BAD63077.1| conserved hypothetical protein [Bacillus clausii KSM-K16] Length = 893 Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 28/194 (14%), Positives = 53/194 (27%), Gaps = 20/194 (10%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q + + + + + + A G GKT L +M+ L +P + Sbjct: 15 RTYQKKILADMAALLQNK---------RVHLVAPPGSGKTVLGLELMVRL--NKPTFILA 63 Query: 112 CIANSETQLKNTLWAEVSK------WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 Q + W+S + F + + D Sbjct: 64 PTVAIRNQWAERFLELFWQGDKTPDWISTDIRQPAFVTIATYQGLHSLCSFEDSGGFEGD 123 Query: 166 SKHYTITCRTYS---EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222 +T S +ER + + + + DEA KS + F LN Sbjct: 124 DVDIATEHQTESLGGKERKEAYKRLLDMDFQTLIVDEAHHLRAAWWKSTIDFRRSLNKPT 183 Query: 223 FWIMTSNTRRLNGW 236 +T+ Sbjct: 184 IVALTATPPYDVSQ 197 >gi|114564992|ref|YP_752506.1| type III restriction enzyme, res subunit [Shewanella frigidimarina NCIMB 400] gi|114336285|gb|ABI73667.1| type III restriction enzyme, res subunit [Shewanella frigidimarina NCIMB 400] Length = 1061 Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 58/199 (29%), Gaps = 29/199 (14%) Query: 39 GIKGKPLEHFS-QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97 G HF +P Q E +E + +V + +K + A G GKT ++A+ Sbjct: 317 GYSDDSAFHFDIKPFAHQREILEQL------DVERTVHQRYKNLVVAATGTGKTLISAFD 370 Query: 98 MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 P + + +A+ + LK L + + + W AE Sbjct: 371 FARFYKQHPEANFLFVAHRQEILKQAL-------------SAYRGVLKNNQFGELWVAEH 417 Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217 S + S + + + DE G Sbjct: 418 KPNSYRH------LFASIQSLNLQLSSLPLTADFYDYIVIDEVHHIAASSY---RGLLAH 468 Query: 218 LNPNRFWIMTSNTRRLNGW 236 +P +T+ R +G Sbjct: 469 FSPKILLGLTATPERHDGQ 487 >gi|226326214|ref|ZP_03801732.1| hypothetical protein PROPEN_00056 [Proteus penneri ATCC 35198] gi|225205401|gb|EEG87755.1| hypothetical protein PROPEN_00056 [Proteus penneri ATCC 35198] Length = 564 Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 36/342 (10%), Positives = 83/342 (24%), Gaps = 54/342 (15%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSI 110 WQ + ++ ++ ++ + +G+G GK+ + + L+ + P + Sbjct: 76 PWQCFVIGSIFGWKMTDGTRRFRMVY---VESGKGSGKSPMAGGVGLYCLVADSEPRAEV 132 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 A + Q L+ + + P + G E + Sbjct: 133 YAAATKKDQAM-ILFRDAVAMVDQSP-----ALSQRITKSGGTGKEWNLAYLK------- 179 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 T + D DE + ++ T+ M +N+ Sbjct: 180 -TSSFFRPISSDDGQS--GPRPHCALIDEIHEHKNNTAVEMMRAGTKGRRQALIFMITNS 236 Query: 231 R-RLNGWFYDIFNIPL-----------------------EDWKRYQIDTRTVEGIDSGFH 266 YD + +K + + F Sbjct: 237 GHDKTSVCYDYHEYGRKVAEGTIEDDSFFSYICSLDESDDPFKDESCWGKANPSLGYTFS 296 Query: 267 EG-------IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319 E + R Q+ + +++ + D Sbjct: 297 ERYLREQVTQARGMPAKESIVRRLNFCQWVDADNPWINSETWMQCENTFTFDDLQGEECY 356 Query: 320 MGCDIAGEGGDKTVVVF-RRGNIIEHIFDWSAKLIQETNQEG 360 G D++G D T + ++ W+ K + Sbjct: 357 GGLDLSGT-KDLTALALYFPSLKRLYVEFWTPKDTLLDRAKT 397 >gi|227888706|ref|ZP_04006511.1| ATP-dependent RNA helicase [Lactobacillus johnsonii ATCC 33200] gi|227850733|gb|EEJ60819.1| ATP-dependent RNA helicase [Lactobacillus johnsonii ATCC 33200] Length = 461 Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 59/234 (25%), Gaps = 23/234 (9%) Query: 37 PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96 P G +F +P + Q + A+ + A G GKT Sbjct: 15 PELQAGLEKINFKKPTKVQSSVIPAL------------LNKKNVVVQAATGSGKTHAYLI 62 Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156 +L +I ++ + +L N L+ + R + + G Sbjct: 63 PILNMIDENAPVTQAIVTAPSRELANQLYKVARQ------LRDASGLNISIEYLGGGNDR 116 Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG-TPDIINKSILGFF 215 + I + + + A DEA + Sbjct: 117 NRQIEKAESRAPQLIIATPGRLHDFASKKFINLENVKAFIIDEADMTLDMGFLSQMDEIM 176 Query: 216 TELNPNRFWIMTSN--TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267 ++L+ S +L + + P ++ I + + Sbjct: 177 SKLDKKAVLGAFSATIPVKLENFLRKYMSKP--EFIVIDNPAIIAPTIQNDLID 228 >gi|295695496|ref|YP_003588734.1| SNF2-related protein [Bacillus tusciae DSM 2912] gi|295411098|gb|ADG05590.1| SNF2-related protein [Bacillus tusciae DSM 2912] Length = 688 Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 28/278 (10%), Positives = 72/278 (25%), Gaps = 32/278 (11%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +P +Q++ +++V + G+GKT M+ I Sbjct: 167 EPFEYQIKTVQSVMHQFKGRALLCDEV----------GLGKTVEAGICMMEYIMRGLAKK 216 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I+ + L N E+ + + F + + Sbjct: 217 ILILVP--PSLINQWHEEMKRKFNQ-----DFIRSDDRAFIALGEEAWRR--------YN 261 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 + + +RP+ + H + DEA + F L ++T+ Sbjct: 262 KVIASLATAKRPNHRRVISDIHYDLIVVDEAHHVKNRN-SVAWQFVNSLKKKYMLLLTAT 320 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 + + L+ + + + + E++ + Sbjct: 321 PVQNSLEELYNLITLLKPGQLKTYSHFRRHFVVDNQGVEVKN--ADKLRALLSEVMIRNR 378 Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE 327 + V+ R + + + D++ Sbjct: 379 RSSVDVKFTKRQAHTKTVRLSEPEQ----RLYIDLSRF 412 >gi|330836783|ref|YP_004411424.1| phage protein [Spirochaeta coccoides DSM 17374] gi|329748686|gb|AEC02042.1| phage uncharacterized protein [Spirochaeta coccoides DSM 17374] Length = 541 Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 52/354 (14%), Positives = 98/354 (27%), Gaps = 51/354 (14%) Query: 21 HAECVLSFKNFVMRFFP---------WGIKGKPLEHFSQPHR-----W-----QLEFMEA 61 H + F+ +FP W + +Q + W Q + A Sbjct: 39 HEKFRTDIGGFMKYYFPHYIRLEPPSWQRLLFSIFENTQFDKRGRPYWIVTEKQARQLSA 98 Query: 62 VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW-MMLWLISTRPGMSIICIANSETQL 120 V S++ + + A+ A R GK+T+ A ++LW + ++ I +++ Sbjct: 99 VHRKEFSHIPHQVDILRGLALCAPREQGKSTVFARLLILWGLIYGYFRFVVLIRSNDALA 158 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 L + ++ + Q S+ SG Y ++ + + E+R Sbjct: 159 GQFLDDTMVEFEDNQRLLADYGNQRGSVWKSGQYLLKNGAALVSIGRGAGVRGLVSREKR 218 Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDII--------NKSILGFFTELNPNRFWIMTSNTRR 232 PD + D+ + D I L+ N + Sbjct: 219 PD-----------VIILDDITTDQDKNNVATLHKIYDWISSAVFGLSKNAVIFTLNTIYN 267 Query: 233 LNGW----FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI------ISRYGLDSDVARI 282 I L W + +G + + E R + S I Sbjct: 268 GEDPQSTILKKIVAQELPGWVGVRFSAEIEDGKKALWPEYWPLAALRKKRMEVGSKTYNI 327 Query: 283 EILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 E L + + E + G D EG D + Sbjct: 328 EYLSI-TTDDGTKIFKAEQMLYVPGTEISI-PDYEIAFGVDPNAEGSDDAAIGV 379 >gi|268318980|ref|YP_003292636.1| ATP-dependent RNA helicase [Lactobacillus johnsonii FI9785] gi|262397355|emb|CAX66369.1| ATP-dependent RNA helicase [Lactobacillus johnsonii FI9785] Length = 461 Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 58/231 (25%), Gaps = 23/231 (9%) Query: 40 IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99 G +F +P + Q + A+ + A G GKT +L Sbjct: 18 QAGLEKINFKKPTKVQSSVIPAL------------LNKKNVVVQAATGSGKTHAYLIPIL 65 Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159 +I ++ + +L N L+ + R + + G + Sbjct: 66 NMIDENAPVTQAIVTAPSRELANQLYKVARQ------LRDASGLNISIEYLGGGNDRNRQ 119 Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG-TPDIINKSILGFFTEL 218 I + + + A DEA + ++L Sbjct: 120 IEKAESRAPQLIIATPGRLHDFASKKFINLENVKAFIIDEADMTLDMGFLSQMDEIMSKL 179 Query: 219 NPNRFWIMTSN--TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267 + S +L + + P ++ I + + Sbjct: 180 DKKAVLGAFSATIPVKLENFLRKYMSKP--EFIVIDNPAIIAPTIQNDLID 228 >gi|149911893|ref|ZP_01900493.1| putative bacteriophage terminase, ATPase subunit [Moritella sp. PE36] gi|149805043|gb|EDM65069.1| putative bacteriophage terminase, ATPase subunit [Moritella sp. PE36] Length = 601 Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 41/327 (12%), Positives = 85/327 (25%), Gaps = 76/327 (23%) Query: 56 LEFMEAVDVHCHSNVN----NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 E ++ + + + I R IG T A+ + I Sbjct: 146 KEMLDELKDNLLYPHQLHWFEHQDYRSRF-ILKPRQIGATFYFAFEAFYDAVVNGRNKIF 204 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A S Q + + +++ + E+ L + + Sbjct: 205 ISA-SRDQAEIF----KANIIALCREQFGIELSGSPLTMRNKG----KTTTLYFKSTNAR 255 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSN 229 T ++ S + ++ DE P + T + S Sbjct: 256 TAQSASGD---------------LYIDEVFWIPKFKELRSLAQAMATHKDFRI--TYFST 298 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI----- 284 + YD++N W R E H+ + D + R ++ Sbjct: 299 PSVTSHEAYDLWN---GRWYRKTKACNDPEFAIDVSHKTLKHGLLCDDGIWRQKLNVYDV 355 Query: 285 -------------LGQFPQQEVNNFIPHNYIEEAMS----------------------RE 309 ++ ++E +N +I++A S Sbjct: 356 VEQGFDRIDISMLENEYSKEEFDNLFMCKFIDDAHSAFSLKQLMACVGNSKKWTDFDPTW 415 Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVF 336 + P+++G D A +VVV Sbjct: 416 SRPYAMKPVVIGFDPARTRDIASVVVL 442 >gi|312984196|ref|ZP_07791542.1| putative phage terminase, large subunit [Lactobacillus crispatus CTV-05] gi|310894415|gb|EFQ43491.1| putative phage terminase, large subunit [Lactobacillus crispatus CTV-05] Length = 632 Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 41/351 (11%), Positives = 87/351 (24%), Gaps = 46/351 (13%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW---- 96 L WQ + ++ N IS GRG GKT + Sbjct: 88 PDVDLHKPLPLMNWQKFILAMINGWKDENDEKRFTD---IHISVGRGQGKTQIAGIQMCK 144 Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM---------LPHRHWFEMQSLS 147 +L + AN+ Q L+ + K L L ++Q+ Sbjct: 145 AVLIDTLNYTNKDFLVTANTSDQ-STKLFGYIKKMLEAVIKIEPFASLAKESGLDLQTNQ 203 Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEE-----------RPDTFVGPHNTHGMAVF 196 + ++ + S D T +E + + Sbjct: 204 IIEKRTNNKVWKISYEADKYDSTHNVLAIYDETGALNTYDRITDITDGQAQVIPYHQFIK 263 Query: 197 NDEASGTPDIINKSILGFFT--------ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW 248 A P N ++ + + + + Sbjct: 264 ISSAYPDPTSPFHQEQITLQHVMEKDYDREGDNSLCLVWAQDNLDETFKPETWEKSNP-- 321 Query: 249 KRYQIDTRTVEGIDSGFHEGIISRYGLDS-DVARIEILGQFPQQEVNNFIPHNYIEEAMS 307 + + + ++ + + L + +Q +++ +E A+ Sbjct: 322 -LIGLSHSERKRRTENLIKQRDQGMLTNTLHKFQNKNLNLWLKQSTASYLNLKDVENAVD 380 Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVF-RRGNIIEHIFDWSAKLIQETN 357 D + MG D + D T V F + + W + + + Sbjct: 381 DSFEID-GLRVYMGLDYSMF-SDNTAVGFAFPYTTADGVHKWH---MMQHS 426 >gi|149910732|ref|ZP_01899367.1| phage terminase, large subunit, putative [Moritella sp. PE36] gi|149806172|gb|EDM66151.1| phage terminase, large subunit, putative [Moritella sp. PE36] Length = 566 Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 32/304 (10%), Positives = 67/304 (22%), Gaps = 55/304 (18%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ+ + + I+ R GK+TL+ + L+ + Sbjct: 88 PWQIFMLCCLFGMKSKEDGLLKYNYCYAQIA--RKGGKSTLSGGITLFKLIKGGYAPQAF 145 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 A + + LW +S P + + E + + Sbjct: 146 SAATTREQAAILWNAAKIMISQSPKLR-----------TIFKVLQNEIRLPHKQGIFRPV 194 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEAS----------------GTPDIINKSILGF-- 214 DEA PD + I Sbjct: 195 ASQS--------HTLDGKEPTISILDEAHAIVDRNLYEVLESAMGTIPDQLFLIITTAGF 246 Query: 215 ----FTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV--------EGID 262 + + +FY I I D + + I Sbjct: 247 ILDGLCTQLNRDGKAVLEQQVNQDSYFYLIAEIDEGDDPWLEENWYKANLGMAHGLPNIK 306 Query: 263 SGFHE-GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD--LYAPLI 319 + + + + L F ++++ + ++ + D Sbjct: 307 TLRAQAEMAKISVEKKAGWYTKRLNIFVTG-TDSWLDMDEVKACRDKSLNIDDFRGKECY 365 Query: 320 MGCD 323 +G D Sbjct: 366 IGID 369 >gi|257077324|ref|ZP_05571685.1| type III restriction protein res subunit [Ferroplasma acidarmanus fer1] Length = 649 Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 64/188 (34%), Gaps = 30/188 (15%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM- 108 P+ +Q + +E + N N + + G GKT ++A+ + P Sbjct: 332 HPYPYQSKILEELRADRQLRGNYHN------LVVSATGTGKTIISAFDYKQFVREHPDSS 385 Query: 109 -SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 ++ IA+ E LK ++ + + + + S + Sbjct: 386 NRLLFIAHREEILKQSI-------------ACFRNVLKDPEFGNLYVGNYKPLS----DE 428 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227 H ++ +T+ RPD + H + + DE ++ NP +T Sbjct: 429 HLFMSIQTFESIRPDLQLDKH--YYDFIIIDEFHHAAAKSYANL---LNHFNPEIMLGLT 483 Query: 228 SNTRRLNG 235 + R++G Sbjct: 484 ATPERMDG 491 >gi|50955854|ref|YP_063142.1| phage-related terminase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50952336|gb|AAT90037.1| phage-related terminase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 467 Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 42/336 (12%), Positives = 84/336 (25%), Gaps = 64/336 (19%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 P+ Q ++ + + N +F+ A+ A R KT L + P Sbjct: 17 PPYPEQQLILDDLFALDVAEPNR--SAVFEQAVIAARQQLKTGFLKQAALGWLYVMPQPL 74 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 +I A+ + + ++ ++ P L +S+ + Sbjct: 75 VIWSAHEFGTAQEA-FRDMQALIASSPD--------LDRRVRKIRTAAGSESIEMKDGSR 125 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF-----------TEL 218 S G V DEA + ++L + Sbjct: 126 LRFKARTSGGG-------RGLTGSKVILDEAFALDAAMMGALLPTLISVPDPQVVYASSA 178 Query: 219 NPNRFWIMTSNTRRLNGWFYDIFN-----------------------IPLEDWKRYQIDT 255 + I+ R G + L+D ++ Sbjct: 179 GLAKSGILRGVRDRGCGGVDRMGYAEWLAQKRECASKVCNHAVGTPGCALDDKVLWRKAC 238 Query: 256 RTVEGIDSGFHEGIIS-RYGLDSDVARIEILGQFPQQEVNNFIPHNYI-----------E 303 D + I + R L D E LG + + ++ I Sbjct: 239 PISARKDPEQMQAIANLRMALPPDEFMRECLGWWDEPLGDSIIGEGLWRSLLVEDSTIDR 298 Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRG 339 A + + + I+ + G + R G Sbjct: 299 AAFALDVSPERDWASIVVAGVNQYGRIHIEITSRDG 334 >gi|220905493|ref|YP_002480805.1| hypothetical protein Ddes_2231 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869792|gb|ACL50127.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 702 Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 25/187 (13%), Positives = 51/187 (27%), Gaps = 27/187 (14%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +WQ + + I G GKT + A +L + P +I+ Sbjct: 187 DQWQKKAAIEIPEGSQR-------------IRGLAGSGKTVVLALKAAYLHTQHPEWNIV 233 Query: 112 CIANS---ETQLKNTLWA-------EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161 ++ Q+ + + + W + W ++ + + Sbjct: 234 VTYHTRSLYQQITDLIERFTFEHSGDKPDWGKLKVMHAWGSASEPGVYSEAAESLGVIPI 293 Query: 162 MGIDSKHYTITCRTYSEERPD---TFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218 +K T S + + + A+ DEA P + + E Sbjct: 294 NFALAKQKYGTKDALSGICEELLISMDETYKADYDAILIDEAQDLPISFFRMVYLMVKEP 353 Query: 219 NPNRFWI 225 FW Sbjct: 354 -KRIFWA 359 >gi|323439023|gb|EGA96756.1| phiSLT ORF 563-like protein, terminase, large subunit [Staphylococcus aureus O11] Length = 406 Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 49/347 (14%), Positives = 92/347 (26%), Gaps = 59/347 (17%) Query: 22 AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81 E V F+ F KG + QP WQ + ++ H + Sbjct: 54 EELVHRPIRFIE-KFCKPSKGSKRQLVLQP--WQHFIIGSLFGWVHK--ETKLRRFKEAL 108 Query: 82 ISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 I GR GKTT + + + +S G I +AN Q + L+ E + P Sbjct: 109 IFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKASP--- 164 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 +L + + + + + + + DE Sbjct: 165 ----------------KLDKNFRTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDE 208 Query: 200 ASGTPD-IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT- 257 D + I +T+ +L+G D+ + + D RT Sbjct: 209 IHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVDMVEAGRDTLDQIIEDERTF 268 Query: 258 --------------------------VEGIDSGFHEGIISRYGLDSDV--ARIEILGQFP 289 V E ++ + F Sbjct: 269 YYLASLDDDDDINDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFA 328 Query: 290 QQEVNNFIPHNYIEEAMSR-EAIDDLYAPLIMGCDIAGEGGDKTVVV 335 + +FI + +++ + P +G D++ D T Sbjct: 329 NNDEMSFIDYPTLQKNNEIVSLEELEGRPCTIGYDLSET-EDFTAAC 374 >gi|300724886|ref|YP_003714211.1| putative terminase large subunit [Xenorhabdus nematophila ATCC 19061] gi|297631428|emb|CBJ92125.1| putative terminase large subunit [Xenorhabdus nematophila ATCC 19061] Length = 553 Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 39/315 (12%), Positives = 71/315 (22%), Gaps = 54/315 (17%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 WQ A V + ++ A I R K+T+ A + W + G Sbjct: 70 EPWQQ---FAFANLLGFKVKATGRRKYRSAYIQVPRKNAKSTVAAILANWFLVMEQGQQD 126 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 I A ++ + S L ++ K Sbjct: 127 IYTAAVSRDQARIVF-------------------DDARQMSLLSKPLKKRVAIQQHKVTY 167 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 + + T+ DE PD S L P + Sbjct: 168 PKTNSLLKPLAAKAATIEGTNPSLAIVDEYHLHPDNAVYSALELGMGARPEGLLFAITTA 227 Query: 231 RRLN----GWFYDIF-----------------------NIPLEDWKRYQIDTRTVEGIDS 263 YD + ++ + + +DS Sbjct: 228 GNNVISACKQHYDYCCQILDGEEQNESLFALIYELDDEHEIDDETLWIKANPNLDVSVDS 287 Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQ--QEVNNFIPHNYIEEAMSREAIDD-LYAPLIM 320 I + + +F Q ++ + S +D Sbjct: 288 SALHDTIQKARGIPSQWTEMLTKRFNIWCQGETPWMGVGAWKACQSDYDENDLKGLECYA 347 Query: 321 GCDIAGEGGDKTVVV 335 G D++ G D T + Sbjct: 348 GLDLSSTG-DITSIC 361 >gi|209559980|ref|YP_002286452.1| Large terminase [Streptococcus pyogenes NZ131] gi|209541181|gb|ACI61757.1| Large terminase [Streptococcus pyogenes NZ131] Length = 429 Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 37/269 (13%), Positives = 74/269 (27%), Gaps = 23/269 (8%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 ++ + RG K+ A + + P +++ I K + + + + L Sbjct: 27 NFYRV-VKGSRGSKKSKTTALNFIVRLLKYPWANLLVIRRYSNTNKQSTYTDFKWACNQL 85 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 H F+ + + + I R +E T + Sbjct: 86 KVTHLFKFNES------------LPEITVKATGQKILFRGLDDELKITSITVDVGLLCWA 133 Query: 196 FNDEASGTPDI-----INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NIPLED 247 + +EA + +SI G + + +T N W +F D Sbjct: 134 WFEEAYQIETEDKFSTVVESIRGSLDAPDFFKQITVTFNPWSERHWLKRVFFDEETKRAD 193 Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307 R E +D Y + ARI G++ E F ++ + Sbjct: 194 TFSGTTTFRVNEWLDDVDKRRYEDLYKTNPRRARIVCDGEWGVAEGLVFDNFEVVDFDVE 253 Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 + G D T++ Sbjct: 254 KTIQRVKETS--AGMDFGFTQDPTTLICV 280 >gi|257064258|ref|YP_003143930.1| hypothetical protein Shel_15620 [Slackia heliotrinireducens DSM 20476] gi|256791911|gb|ACV22581.1| hypothetical protein Shel_15620 [Slackia heliotrinireducens DSM 20476] Length = 481 Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 19/141 (13%), Positives = 40/141 (28%), Gaps = 17/141 (12%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 I+ R GK+ +W+ + G ++ A+ ++ ++ E+ ++ Sbjct: 62 VGITKPRQNGKSFALRDYAMWMAAV-EGRCVLYTAHHGRTVRK-MFKEMCDFIEAHGD-- 117 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + EL + E + T G V DE Sbjct: 118 -------------FRDELDYVYKAGGYEGIYFKGGACIEFQTRTESGGRGGTYQIVVFDE 164 Query: 200 ASGTPDIINKSILGFFTELNP 220 A ++IL + Sbjct: 165 AQQLTRAQQEAILPAVSAGGE 185 >gi|110804738|ref|YP_688258.1| putative bacteriophage protein [Shigella flexneri 5 str. 8401] gi|110614286|gb|ABF02953.1| putative bacteriophage protein [Shigella flexneri 5 str. 8401] Length = 255 Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Query: 295 NFIPHNYIEEAMSREAID--DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 I ++IE A+ + +G D+A G DK V+R G+++ +W AK Sbjct: 10 AIIKLSWIEAAVDAHKTLNFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAK 68 >gi|24112089|ref|NP_706599.1| putative bacteriophage protein [Shigella flexneri 2a str. 301] gi|30062202|ref|NP_836373.1| putative bacteriophage protein [Shigella flexneri 2a str. 2457T] gi|24050918|gb|AAN42306.1| putative bacteriophage protein [Shigella flexneri 2a str. 301] gi|30040447|gb|AAP16179.1| putative bacteriophage protein [Shigella flexneri 2a str. 2457T] gi|281600053|gb|ADA73037.1| putative bacteriophage protein [Shigella flexneri 2002017] gi|332768291|gb|EGJ98476.1| hypothetical protein SF293071_0835 [Shigella flexneri 2930-71] Length = 179 Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Query: 295 NFIPHNYIEEAMSREAID--DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 I ++IE A+ + +G D+A G DK V+R G+++ +W AK Sbjct: 10 AIIKLSWIEAAVDAHKTLNFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAK 68 >gi|71281314|ref|YP_270050.1| putative helicase [Colwellia psychrerythraea 34H] gi|71147054|gb|AAZ27527.1| putative helicase [Colwellia psychrerythraea 34H] Length = 1017 Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 65/197 (32%), Gaps = 29/197 (14%) Query: 40 IKGKPLEHFS-QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98 P +F +PH Q +E + V ++ + A G GKT ++A+ Sbjct: 258 NPSTPSFYFDIKPHSHQQTILEKLQ------VERDLHNRYRNLVVAATGTGKTIISAFDF 311 Query: 99 LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 + P + IA+ E LK L A + +L + + E+ + PS + Sbjct: 312 SRFYNANPEAKFLFIAHREEILKQALGA----YRGVLKNSTFGELWVGNNKPSKYQH--- 364 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218 + S + + + DE +++L F+ Sbjct: 365 ------------LFASIQSVNAQIETLALSEDYFDYIVIDEVHHISASSYRAVLKHFS-- 410 Query: 219 NPNRFWIMTSNTRRLNG 235 P +T+ R +G Sbjct: 411 -PQILLGLTATPERHDG 426 >gi|306829027|ref|ZP_07462218.1| conserved hypothetical protein [Streptococcus mitis ATCC 6249] gi|304428832|gb|EFM31921.1| conserved hypothetical protein [Streptococcus mitis ATCC 6249] Length = 877 Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 23/196 (11%), Positives = 57/196 (29%), Gaps = 30/196 (15%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 ++Q + ++ + + ++A G GKTT+ + R G + Sbjct: 11 RQYQKQVLDRFQDYQADGHVH--------LVAAP-GSGKTTIG-----IELIARFGNPAL 56 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + + E +W+ + Q +S S E+ ++ ++ Sbjct: 57 ILVPT------VTIRE--QWVERIQTAFLENEQKISDLVSQNLKEMKALTIVTYQAFHSA 108 Query: 172 TCRTYSEERPDTFVG--------PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223 + S+E + + DE + KS+ F + + Sbjct: 109 MNQLQSQEDGEVEDFVGFDLLASLRAQKVATLCLDECHHLRNEWWKSLEAFRKQYGQLKL 168 Query: 224 WIMTSNTRRLNGWFYD 239 +T+ + Sbjct: 169 ISLTATPPYDSDPELW 184 >gi|167640828|ref|ZP_02399087.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus anthracis str. A0193] gi|170707219|ref|ZP_02897675.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus anthracis str. A0389] gi|177654980|ref|ZP_02936674.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus anthracis str. A0174] gi|190567486|ref|ZP_03020399.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus anthracis Tsiankovskii-I] gi|227816663|ref|YP_002816672.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus anthracis str. CDC 684] gi|167511222|gb|EDR86609.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus anthracis str. A0193] gi|170127997|gb|EDS96868.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus anthracis str. A0389] gi|172080365|gb|EDT65453.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus anthracis str. A0174] gi|190561273|gb|EDV15245.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus anthracis Tsiankovskii-I] gi|227003527|gb|ACP13270.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus anthracis str. CDC 684] Length = 504 Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 59/205 (28%), Gaps = 26/205 (12%) Query: 36 FPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95 F KGK WQ F+ ++ H ++ R GK+TL++ Sbjct: 7 FCKHSKGKWAGKPIDLELWQKAFIGSLFGFIHKIDGTRKYREALLIVA--RKNGKSTLSS 64 Query: 96 WMMLWL--ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153 + L+L G + +A E Q K +W+E + + P LS Sbjct: 65 GICLYLQIADGEGGAEVYAVATKEKQAK-IVWSEAKRMVKKSPV--------LSKRIKAL 115 Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK--SI 211 EL + T H DE D + Sbjct: 116 VKELNADFNDSTFQPVGSDSDTLDGLN------VHGAS-----LDEIHAWKDKNLYDVIV 164 Query: 212 LGFFTELNPNRFWIMTSNTRRLNGW 236 G P I T+ T R + + Sbjct: 165 DGTSAREQPLILMITTAGTVRESVY 189 >gi|149909656|ref|ZP_01898309.1| putative bacteriophage terminase, ATPase subunit [Moritella sp. PE36] gi|149807360|gb|EDM67313.1| putative bacteriophage terminase, ATPase subunit [Moritella sp. PE36] Length = 601 Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 40/327 (12%), Positives = 84/327 (25%), Gaps = 76/327 (23%) Query: 56 LEFMEAVDVHCHSNVN----NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 E ++ + + + I R IG T A+ + I Sbjct: 146 KEMLDELKDNLLYPHQLHWFEHQDYRSRF-ILKPRQIGATFYFAFEAFYDAVVNGRNKIF 204 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A S Q + + +++ + E+ L + + Sbjct: 205 ISA-SRDQAEIF----KANIIALCREQFGIELSGSPLTMRNKG----KTTTLYFKSTNAR 255 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSN 229 T ++ S + ++ DE P + T + S Sbjct: 256 TAQSASGD---------------LYIDEVFWIPKFKELRSLAQAMATHKDFRI--TYFST 298 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI----- 284 + YD++N W R E + + D + R ++ Sbjct: 299 PSVTSHEAYDLWN---GRWYRKTKACNDPEFAIDVSRKTLKHGLLCDDGIWRQKLNVYDV 355 Query: 285 -------------LGQFPQQEVNNFIPHNYIEEAMS----------------------RE 309 ++ ++E +N +I++A S Sbjct: 356 VEQGFDRIDISMLENEYSKEEFDNLFMCKFIDDAHSAFSLKQLMACVGNSKKWTDFDPTW 415 Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVF 336 + P+++G D A +VVV Sbjct: 416 SRPYAMKPVVIGFDPARTRDIASVVVL 442 >gi|116620817|ref|YP_822973.1| type III restriction enzyme, res subunit [Candidatus Solibacter usitatus Ellin6076] gi|116223979|gb|ABJ82688.1| type III restriction enzyme, res subunit [Candidatus Solibacter usitatus Ellin6076] Length = 570 Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 34/288 (11%), Positives = 73/288 (25%), Gaps = 46/288 (15%) Query: 52 HRWQLEFMEAVDV-HCHSNVNNSNPTIFKCAISAGR---------GIGKTTLNAWMMLWL 101 RW+ V ++ +I + A+S R G+GKT + A + Sbjct: 125 RRWEKLADRPVATRQLRGYQESAIASILEVAVSGKRRSALVVMATGLGKTFVAAESYRRM 184 Query: 102 ISTRPGMSIICIANSET---QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 T P + + +A++ QL+ W + K + + Sbjct: 185 RETHPTLRALVLAHTNDLVYQLERAFWPCLDK------------SEITGVW-----NGYE 227 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT-- 216 I + V DE + +L Sbjct: 228 VPDPEASLTFACIDSVASKLQVSGRLDL----GVDLVIVDECHHAGSDEYRVVLEALRCG 283 Query: 217 ELNPNRFWIMTSNTRRLNGW-FYDIFNIPLEDWKRY---QIDT-RTVEGIDSGFHEGIIS 271 + MT+ R +G + +F P+ ++ V+ + Sbjct: 284 SQDGPFLIGMTATPWRPDGTSIHSLFGEPVSCVDIVQGLKMGWLSNVDYRMHVDNINWQE 343 Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319 + R F Q+ + +++ ++ Sbjct: 344 LNRVHHLTPRGLNRTIFIQEWDDAV-----VQKLKETWYEIPHARAIV 386 >gi|261342719|ref|ZP_05970577.1| putative phage terminase, large subunit [Enterobacter cancerogenus ATCC 35316] gi|288315373|gb|EFC54311.1| putative phage terminase, large subunit [Enterobacter cancerogenus ATCC 35316] Length = 553 Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 26/256 (10%), Positives = 52/256 (20%), Gaps = 26/256 (10%) Query: 29 KNFVMRFFPWGIKGKPLEH-FSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRG 87 + F+ PL + WQ + +S + + R Sbjct: 46 ERFIAFSRLCPHVKGPLRGQPIELEPWQQFAFANLLGFKNSESGRRKYSSAFIEV--PRK 103 Query: 88 IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147 K+T+ A + W + G I A ++ + Sbjct: 104 NAKSTVAAMLANWFLVMEKGQQDIYTAAVSRDQARIVF-------------------DDA 144 Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207 L ++ K + + T+ DE PD Sbjct: 145 RQMCLLSKPLKKRVNIQAHKVIFPKSNSLLKPLAAKAATIEGTNPSLAIVDEYHLHPDNG 204 Query: 208 NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267 S L P + D+ + Sbjct: 205 VYSALELGMGARPEAILFAITTAGSNVVSACKQHY----DYCCQILAGEESNDSLFVLIY 260 Query: 268 GIISRYGLDSDVARIE 283 + ++ I+ Sbjct: 261 ELDDESEVEQPEMWIK 276 >gi|301310332|ref|ZP_07216271.1| phage terminase, large subunit, PBSX family [Bacteroides sp. 20_3] gi|300831906|gb|EFK62537.1| phage terminase, large subunit, PBSX family [Bacteroides sp. 20_3] Length = 422 Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 33/300 (11%), Positives = 79/300 (26%), Gaps = 41/300 (13%) Query: 62 VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM--LWLISTRPGM---SIICIANS 116 + + + + F I+ GRG GK+ + + L T I+ + Sbjct: 2 IVPQENYHPLYEDKEKFIILITGGRGSGKSFNASTFIERLTFEMTEAEKIVHQILYTRYT 61 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 ++ E+ + + + +F+ + + ++ + + S + T ++ Sbjct: 62 MVSAGMSIIPEMMEKIDLDGTTKYFKTTKTDIVNKMTKSRIMFRGIKTSSGNQTAKLKSI 121 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236 I+ + I+ N N + Sbjct: 122 QGITTFVCDEAEEWTNE------------EEFDKIMLSIRKKGIQNRIIIIMNPCDSNHF 169 Query: 237 FYDIFNIPLE---DWKRYQIDTRTVEGI--------------DSGFHEGIISRYGLDSDV 279 Y + + Q+ T + F + + + + Sbjct: 170 IYQKYIEKTHKLVEIDGVQVQISTHPNVLHIHTTYFDNLENLSPEFLKEVGDMKVNNPEK 229 Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRG 339 ++GQ+ I + RE + +G D G D + R G Sbjct: 230 YAHVVIGQWADVAEGAVFKKWGIVKEFPRECK-----KVGIGQDF-GFTNDPSA-AVRCG 282 >gi|167821749|ref|ZP_02453429.1| phage terminase, large subunit, putative [Burkholderia pseudomallei 91] Length = 529 Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 34/315 (10%), Positives = 80/315 (25%), Gaps = 57/315 (18%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 +G + + +Q EF+ ++ + H +I+ R GK+ + A ++L Sbjct: 36 EGALVGQPIRFEEFQREFIVSIYDNPHGTRRAY------LSIA--RKNGKSAVIACILLA 87 Query: 101 LISTRP---GMSIICIANSETQLKNTLWAEVSKWLSMLPH-RHWFEMQSLSLHPSGWYAE 156 + I+ A S Q ++ +K + + P + + G Sbjct: 88 HLIGPEAKLNSQIVSGAMSRDQAA-LVFNLAAKMVQLSPEIAPLVRINPSAKKLVGLPLN 146 Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGF 214 + +++ ++K H + DE P + Sbjct: 147 VEYKALSAEAKTT------------------HGLSPVLAILDEIGQIRGPQDDFIDAVTT 188 Query: 215 FTELNPNRFWIMTSN---------------TRRLNGWF--YDIFNIPLEDWKRYQIDTRT 257 + + S + N ++ + + Sbjct: 189 SQGAHAEPLLVAISTQAANDADLLSVWIDDALKSNDPHIVCRLYAADQDAELMDRKAWAA 248 Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN-------FIPHNYIEEAMSREA 310 F V + F +N FI + + R Sbjct: 249 ANPALGVFRSEKDVEEQAKQAVRMPSVENTFRNLILNQRVSTVAPFISRDVWKSCGGRPL 308 Query: 311 IDDLYAPLIMGCDIA 325 + + G D++ Sbjct: 309 EFEPSTQVFGGLDLS 323 >gi|168207201|ref|ZP_02633206.1| phage terminase, large subunit, pbsx family [Clostridium perfringens E str. JGS1987] gi|170661424|gb|EDT14107.1| phage terminase, large subunit, pbsx family [Clostridium perfringens E str. JGS1987] Length = 427 Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 24/227 (10%), Positives = 59/227 (25%), Gaps = 38/227 (16%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + G G K+ ++ + + + ++++ + + + + Sbjct: 26 LVGGYGSSKSFHVGIKLIKKLFE-EKRKALVVREVFDTIRDSCFDLLEEIAIGMGVYDSM 84 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 E S + + + I ++P + ++ +E S Sbjct: 85 EFISSPM------------QIRFPNGSKIIFKGM---DKPAKLKSING--VSIIWIEECS 127 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI-FNIPLEDWKR---------- 250 K +LG + I+++N W Y F + Sbjct: 128 EVKYAGFKELLGRLRHPTLSNHIILSTNPVSKGNWSYKHFFQDKRNHFFVLDDEELYIKK 187 Query: 251 ---------YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 + + E + D D+ RI G+F Sbjct: 188 NIIIKNTYYHHSTVDDNFFAPKEYIEQLDELKLHDPDLWRIARKGRF 234 >gi|38638405|ref|NP_943780.1| gp2 [Mycobacterium phage PG1] gi|109391848|ref|YP_655098.1| gp2 [Mycobacterium phage Orion] gi|206600292|ref|YP_002241312.1| gp2 [Mycobacterium phage Chah] gi|33334020|gb|AAQ12079.1| gp2 [Mycobacterium phage PG1] gi|88910390|gb|ABD58318.1| gp2 [Mycobacterium phage Orion] gi|206287380|gb|ACI12722.1| gp2 [Mycobacterium phage Chah] gi|282721485|gb|ADA83932.1| gp2 [Mycobacterium phage Scoot17C] Length = 595 Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 48/370 (12%), Positives = 86/370 (23%), Gaps = 51/370 (13%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + + S + + + L A+ S K V P L P+ +E Sbjct: 40 LEQARSWSTEQKHAMLASLRAAKARASMK--VKYAHP-----AELAAALDPNYVVTPAIE 92 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + + +P IS GK+TL A I +A L Sbjct: 93 LISTSIERVLT--SPKQINLEISMPPQEGKSTLAAVATPLRALQHNPHRKIILATYALDL 150 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 T + +W+ + L + L+ + G + Sbjct: 151 AETHSRTMREWIETYGTDVVDPLTGLPVEDKIG----LKLARGANKVTAWSVAGGRGGLV 206 Query: 181 PDT-FVGPHNTHGMAVFND-------EASGT-----PDIINKSILGFFTELNPNRFWIMT 227 + D EA D S+ + + I T Sbjct: 207 AAGIGSRLTGMPADLMIIDDPFKNMMEADSALYRKRVDEWFSSVARTRLAPDASIIMIQT 266 Query: 228 S-NTRRLNG---WFYDIFNIPLEDWKRYQIDTRT-------------VEGIDSGFHEGII 270 + L G W+ I + + Sbjct: 267 RWHPEDLAGKVIAAERSLPRNERTWRVINIPAIAEKGIPDALKREPGTPMVSARDTPEAK 326 Query: 271 SRYGL-----DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325 + G P+ + + EA + Y ++ G D A Sbjct: 327 RNFPKIRREVGERTWYALYQGS-PRNPEGGIFQQKWFDATRLPEAPLNPYTAVV-GIDPA 384 Query: 326 GEG-GDKTVV 334 G GD+ + Sbjct: 385 DSGEGDEAGI 394 >gi|19746248|ref|NP_607384.1| terminase, large subunit [Streptococcus pyogenes MGAS8232] gi|19748434|gb|AAL97883.1| putative terminase, large subunit [Streptococcus pyogenes MGAS8232] Length = 431 Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 37/269 (13%), Positives = 75/269 (27%), Gaps = 23/269 (8%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 ++ + RG K+ A + + P +++ I K + + + + L Sbjct: 29 NFYRV-VKGSRGSKKSKTTALNFIVRLLKYPWANLLVIRRYSNTNKQSTYTDFKWACNQL 87 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 H F+ + + + I R +E T + Sbjct: 88 KVSHLFKFNES------------LPEITVKATGQKILFRGLDDELKITSITVDVGALCWA 135 Query: 196 FNDEASGTPDI-----INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NIPLED 247 + +EA + +SI G + + +T N W +F D Sbjct: 136 WFEEAYQIETEDKFSTVVESIRGTSDVPDFFKQITVTFNPWSERHWLKRVFFDEETKRAD 195 Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307 R E +D Y + ARI G++ E F ++ + Sbjct: 196 TFSGTTTFRVNEWLDDVDKRRYEDLYKTNPRRARIVCDGEWGVAEGLVFDNFEVVDFDVE 255 Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 + + G D T++ Sbjct: 256 KTIQRVKETSV--GMDFGFTQDPTTLICV 282 >gi|225158171|ref|ZP_03725066.1| hypothetical protein ObacDRAFT_7916 [Opitutaceae bacterium TAV2] gi|224802675|gb|EEG20929.1| hypothetical protein ObacDRAFT_7916 [Opitutaceae bacterium TAV2] Length = 304 Score = 48.8 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 35/267 (13%), Positives = 65/267 (24%), Gaps = 38/267 (14%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 + + A R GK+ L + L + PG+ I+ + + E W L Sbjct: 23 PLRRLAYVWRRQGGKSYLLSNEALDWMMETPGVLTSIISAAIALGTEIIVKEAQSWREHL 82 Query: 136 P--------HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187 E + ++ G+ + H TC P Sbjct: 83 ARIKAVAAAADLKLETNADTIDFDGFCDLFEHSKLEAKLWHDRTTCSRTRVIAP-NPNTA 141 Query: 188 HNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI----- 240 G + DE P + ++I F R + T+ + Y++ Sbjct: 142 VGWTGH-IIGDEFGRWPNCQDVLEAIEPFMESNPQFRLRLATTPPPDDAHYSYEMLLPKE 200 Query: 241 ----FNIPLEDWKR-------YQIDTRT---------VEGIDSGFHEGIISRYGLDSDVA 280 ++ +++D + D Sbjct: 201 GTEFTPNARGNFYTSEYGLKIHRVDAWDAELAGKKMHHPDTGAKITPDEHRALAFDKTAW 260 Query: 281 RIEILGQFPQQEVNNFIPHNYIEEAMS 307 QF + I I AM Sbjct: 261 DRNYAIQFIAGGTSA-ISLAAIFRAME 286 >gi|290894028|ref|ZP_06557002.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|290556372|gb|EFD89912.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] Length = 587 Score = 48.8 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 44/322 (13%), Positives = 91/322 (28%), Gaps = 63/322 (19%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTRP--GM 108 WQ + +V H + F+ A + GR GKT+L + + +++ G Sbjct: 103 QPWQHFVVGSVFGWVHKDTGVR---RFREALVFLGRKNGKTSLISALSNYMMGYDEEQGA 159 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 +I +AN++ Q N L+ + + + M P ++++ D K Sbjct: 160 NIYVLANAKEQA-NILFEKTKEMVKMSP--------------RLAGKFKNQRNVIKDEKS 204 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPNRFWIMT 227 ++ S+ R + H DE + I +T Sbjct: 205 FSKMEARASDSRKLDGLNTH-----FAIFDEIHEFVNFKLINVIKKSRAARRQPLLMYIT 259 Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRT------------------------VEG--- 260 + L+G L+ Q Sbjct: 260 TAGYILDGPLMQYIENALDCAAHMQDTLNERVFYFIAKLDNVQEADDPKMWLKSNPNLLL 319 Query: 261 -----IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE-AMSREAIDDL 314 + + + + + L F + +++ I++ + Sbjct: 320 MNFVDLVADWLTERRIPEERADWITKQFNL--FSNIDELSYVDMPTIDKNNKQVDLATLQ 377 Query: 315 YAPLIMGCDIAGEGGDKTVVVF 336 I+G D++ D T VV Sbjct: 378 GKEAIIGYDLSET-EDFTAVVV 398 >gi|183981958|ref|YP_001850249.1| hypothetical protein MMAR_1945 [Mycobacterium marinum M] gi|183175284|gb|ACC40394.1| conserved hypothetical membrane protein [Mycobacterium marinum M] Length = 587 Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 32/278 (11%), Positives = 73/278 (26%), Gaps = 34/278 (12%) Query: 79 KCAISAGRGIGKTTLNAWMM-LWLISTRPGMSIICIANSETQLKN---TLWAEVSKWLSM 134 + ++ GK+ L + + +W +S P II + + + ++ + Sbjct: 61 RLIVTMPPRTGKSVLVSQVFPVWQLSRDPDAEIIVKSYGDALAEEHSAAARRLIADNAGV 120 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 + + Q++ + + + S ++ + Sbjct: 121 VGIELAADKQAVGRWRVAGHRGGMLAGGILSSTTGFGANVLVVDDPVKGAQEADSDAYRR 180 Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254 E K+ L + ++ + + P W+ I Sbjct: 181 RLIAE--------FKASLMTRLMPGASVIIVL--TRWHTDDLAGALLAEPGSRWRCVNIP 230 Query: 255 TRTVEGIDSGFHEGIISRYGLD-----------------SDVARIEILGQFPQQEVNNFI 297 + G+ S LG P+ I Sbjct: 231 AISTAGVPDALQRDRSGVAMTSAVGRTAPQFREIAAEVGSRAWAAMYLGT-PRTPEGGLI 289 Query: 298 PHNYIEEAMSREAIDDLYAPLIMGCDIAGEG-GDKTVV 334 +IE+ A +++G D A G GD+T + Sbjct: 290 KAAWIED-WRLPAAPPGAVKIVVGVDPADSGKGDETGI 326 >gi|146277413|ref|YP_001167572.1| phage terminase [Rhodobacter sphaeroides ATCC 17025] gi|145555654|gb|ABP70267.1| phage Terminase [Rhodobacter sphaeroides ATCC 17025] Length = 535 Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 45/341 (13%), Positives = 94/341 (27%), Gaps = 68/341 (19%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS---TRPGM 108 WQ + + H + + RG KT+L A + + + PG Sbjct: 45 DPWQERIIRRIYGPRHPDGTRVVRRVVL---LLPRGNRKTSLCAALTILHLIGPEREPGG 101 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 I+ A + Q L+ E + + L S+ Sbjct: 102 LIVSAAAAHEQAME-LFNEAALIIQH-----------------DGRLRDLLSVREYVSRI 143 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD----IINKSILGFFTELNPNRFW 224 T H V DE +++ ++ Sbjct: 144 SFPKMGTRYVAVASDGKVQHGKTPNVVIADELHAWEGRAGLRQWEALDSALVKVPGTLMV 203 Query: 225 IMTSNTRRLNGWFYD----------------------IFNIPLEDWKR----------YQ 252 + +++ R + P +DW Sbjct: 204 VASTSGRGQENLAWQTVDYAIKVQKGEIDDPATLPVVFMAEPEDDWNDEEVWQAVNPGLA 263 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE---AMSRE 309 ++G + + S + DS L ++ Q + F+ +E A+ + Sbjct: 264 YGYPDIDGFRDKARKAVHSPFERDS--FLQFNLNRWLDQTTSPFVEMPVYDEGASAVDLD 321 Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVV--VFRRGNIIEHIFDW 348 +D + AP +G D++ + D T + ++ G+ ++ W Sbjct: 322 ELDMVQAPCWLGVDLS-KNEDLTCIVAAWQDGDDGYQVYPW 361 >gi|326562754|gb|EGE13053.1| terminase [Moraxella catarrhalis 103P14B1] Length = 564 Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 27/306 (8%), Positives = 68/306 (22%), Gaps = 54/306 (17%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ+ K I R GK+ + A + ++ G Sbjct: 83 ESWQIFACCLPFGWIKRATG--FRRYTKILIFVCRKNGKSAIAAGIGNYMFCADGEFGAE 140 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 + A +E Q + ++ ++ + + + + + Sbjct: 141 VYSGATTEKQAWEVFRPAKIMVERTKALKDFYGIEVNASNMARLADGSRFEPIIGKPGD- 199 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPNRFWIMTS 228 + DE + + ++ ++T+ Sbjct: 200 -------------------GSSPSCAIIDEYHEHKNNDLYDTMETGMGAREQPIMLVITT 240 Query: 229 NTRRLNGWFYDIFNIPL----------------------EDWKRYQIDTRTVEGIDSGFH 266 + G + + +DW + +D Sbjct: 241 AGSSIGGACHQMVRDAEKMLDGVMDIPDLWAVLYGMDKDDDWTSEIALKKANPNMDISVS 300 Query: 267 EGIISRYGLD-------SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319 + D + R + L ++ + + A P Sbjct: 301 AEFLQARQRDAKMSAAKQAIFRTKHLNEWVGAKNAWLNMAKWANGAKRLPLSALTGRPCF 360 Query: 320 MGCDIA 325 +G D+A Sbjct: 361 IGLDLA 366 >gi|323442650|gb|EGB00278.1| terminase large subunit [Staphylococcus aureus O46] Length = 563 Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 49/348 (14%), Positives = 90/348 (25%), Gaps = 60/348 (17%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ + ++ H + I GR GKTT + + + +S G Sbjct: 81 QPWQHFIIGSLFGWVHK--ETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAE 138 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I +AN Q + L+ E + P +L E + + + Sbjct: 139 IHLLANVMKQAR-ILFDESKAMIKASP-------------------KLRENFRPLRDEIH 178 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTS 228 + + + DE D + I +T+ Sbjct: 179 YDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITT 238 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRT----------------------VEG----ID 262 +L+G D+ + + D RT ID Sbjct: 239 AGYQLDGPLVDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSID 298 Query: 263 SGFHEGIISRYGLDSDV---ARIEILGQFPQQEVNNFIPHNYIEEAMSR-EAIDDLYAPL 318 + + D + F +FI + +++ + P Sbjct: 299 LDEMKEEWEKAKRTPDERGDFITKRFNIFANNNEMSFIDYPTLQKNNEIVSLEELEGRPC 358 Query: 319 IMGCDIAGEGGDKTV----VVFRRGNIIEHIFDWSAKLIQETNQEGCP 362 +G D++ D T G + W K E + E P Sbjct: 359 TIGYDLSET-EDFTAACATFALDNGKVAVLTHSWIPKHKVEYSNEKIP 405 >gi|226313130|ref|YP_002773024.1| hypothetical protein BBR47_35430 [Brevibacillus brevis NBRC 100599] gi|226096078|dbj|BAH44520.1| hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 469 Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 35/272 (12%), Positives = 71/272 (26%), Gaps = 31/272 (11%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLS 133 ++ GR GKT + A I + + ++ + W Sbjct: 27 DARNVVMNCGRRGGKTNVGARKFFDKILSDIEADKGLPYKPPRNLKVMKKPKPRLEYWC- 85 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + P E+Q L + + ++ + + D Sbjct: 86 VSPTYSMSEIQQEELGAVIPEEMIESWDL-SKNRVWLKGYILIQFKSADNPKTLVGKGLD 144 Query: 194 AVFNDEASGTPDIINKS-ILGFFTELNPNRFWIMTSNTRRLNGWFY-------------- 238 V+ DEAS + + + W + + T WFY Sbjct: 145 GVWLDEASKMKEQTWSGYLSYALADKGG---WSVWTTTPEGMNWFYHDIVLNGQHTQAGG 201 Query: 239 -DIFNIPLEDWKRYQIDTRTVEGIDSGF-----HEGIISRYGLDSDVARIEI-LGQFPQQ 291 +W + ++ + E + RY AR ++ GQ ++ Sbjct: 202 QLDEYRNDPEWCNFYWTSKDNPLPELQKNIQRMIETMPKRYVDREIFARFDVFFGQVYEE 261 Query: 292 EVNN--FIPHNYIEEAMSREAIDDLYAPLIMG 321 + +P E+ + A G Sbjct: 262 FDRSIHVVPRALCEQKFKDGHFVHIEAGKDWG 293 >gi|326575949|gb|EGE25872.1| phage terminase, large subunit, putative [Moraxella catarrhalis CO72] Length = 564 Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 26/306 (8%), Positives = 68/306 (22%), Gaps = 54/306 (17%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ+ K I R GK+ + A + ++ G Sbjct: 83 ESWQIFACCLPFGWIKRATG--FRRYTKILIFVCRKNGKSAIAAGIGNYMFCADGEFGAE 140 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 + A +E Q + ++ ++ + + + + + Sbjct: 141 VYSGATTEKQAWEVFRPAKIMVERTKALKDFYGIEVNASNMARLADGSRFEPIIGKPGD- 199 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPNRFWIMTS 228 + DE + + ++ ++T+ Sbjct: 200 -------------------GSSPSCAIIDEYHEHKNNDLYDTMETGMGAREQPIMLVITT 240 Query: 229 NTRRLNGWFYDIFNIPL----------------------EDWKRYQIDTRTVEGIDSGFH 266 + G + + +DW + D Sbjct: 241 AGSSIGGACHQMVRDAEKMLDGVMDIPDLWAVLYGMDKDDDWTSEIALAKANPNYDISVS 300 Query: 267 EGIISRYGLD-------SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319 + D + R + L ++ + + + E + Sbjct: 301 GEFLKARQRDAIASSSKQAIFRTKHLNEWVGAKNAWMNMAKWRDAPKRCELKELEGRKCF 360 Query: 320 MGCDIA 325 +G D+A Sbjct: 361 IGLDLA 366 >gi|323491504|ref|ZP_08096686.1| ATP-dependent RNA helicase SrmB [Vibrio brasiliensis LMG 20546] gi|323314258|gb|EGA67340.1| ATP-dependent RNA helicase SrmB [Vibrio brasiliensis LMG 20546] Length = 411 Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 43/316 (13%), Positives = 82/316 (25%), Gaps = 50/316 (15%) Query: 43 KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102 + +P + Q E + SA G GKT A L + Sbjct: 18 IEEMGYDRPTQIQAEAIPQALDG------------RDVLASAPTGTGKTAAFALPALQFL 65 Query: 103 STRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 P ++ + + A+ ++ L+ + + F + + Sbjct: 66 QDFPRRKPGPARVLILTPTRELAMQV--ADQARALAKHTNLNIFTITGGVQYQEHADILA 123 Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217 Q + + + DEA D+ + + Sbjct: 124 TTQDI--------VVATPGRLMEYIEAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSS 175 Query: 218 LNPNRFWIMTSNTR----RLNGWFYDIFNIP---------LEDWKRYQIDTRTVEGIDS- 263 R + + + G+ D+ P E K Q R + Sbjct: 176 ECRWRKQTLLFSATLEGKGVEGFTADLLKDPAEIDAEPSRRERKKIAQWYHRADDMTHKL 235 Query: 264 GFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AIDDL 314 + I++ S V E L + + IP +I E R D Sbjct: 236 ELLKKILTEQAERSIVFLKTRERLAELRTELEKAQIPCAWIQGEMPQDRRNNAIARFRDG 295 Query: 315 YAPLIMGCDIAGEGGD 330 +++ D+A G D Sbjct: 296 TVNVLLATDVAARGID 311 >gi|170683362|ref|YP_001743036.1| putative phage terminase, large subunit [Escherichia coli SMS-3-5] gi|170521080|gb|ACB19258.1| putative phage terminase, large subunit [Escherichia coli SMS-3-5] gi|323977725|gb|EGB72811.1| phage Terminase [Escherichia coli TW10509] Length = 553 Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 36/277 (12%), Positives = 61/277 (22%), Gaps = 29/277 (10%) Query: 7 TDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHC 66 LE L+ E V F F +KG + WQ + Sbjct: 29 YFSDLENSLYTF--DPEVVERFIAFSRV--CPHVKGAMRGSPIELEPWQQFAFACILGFK 84 Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 T + R K+T+ A + W + G I A ++ Sbjct: 85 VKATGRRKYTSAFIEV--PRKNAKSTVAAILANWFLVMENGQQDIYTAAVSRDQARIVFD 142 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 + + + L + +++ K T P Sbjct: 143 DARQMC--------LLSRPLRKRVNIQAHKVIHPKTNSLLKPLAAKAATIEGTNPS---- 190 Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246 DE PD S L P + + Sbjct: 191 -------LAIVDEYHLHPDNGVYSALELGMGARPEGLLFAITTSGSNVVSACKQHY---- 239 Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283 D+ +D V + +D I+ Sbjct: 240 DYCCQILDGEEVNESMFVLIYELDDESEVDDPAMWIK 276 >gi|153856198|ref|ZP_01996980.1| hypothetical protein DORLON_03013 [Dorea longicatena DSM 13814] gi|149751703|gb|EDM61634.1| hypothetical protein DORLON_03013 [Dorea longicatena DSM 13814] Length = 439 Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 22/178 (12%), Positives = 48/178 (26%), Gaps = 7/178 (3%) Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GMSIICIANSETQLK 121 + S + G KT + + L + P I+ + + Sbjct: 224 FLQEALMKSAEKAPLVIVKGMAGTAKTFYSLAVGLEKVLNNPTGEYRRILICRPNAQFDQ 283 Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 + + + + P + +L E + + K I R + Sbjct: 284 DIGFLPGDEQEKISPL-MRPIVDNLEQLIDSDEEERYQDEQELQGKIEEIFARGLIQTEA 342 Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239 F+ + + DEA + G T I+ + +++ F D Sbjct: 343 MNFIRGRSFVKTYLIIDEAQNMTPNQ---VKGIITRAGKGTKIILLGDPNQIDRPFLD 397 >gi|153855443|ref|ZP_01996574.1| hypothetical protein DORLON_02588 [Dorea longicatena DSM 13814] gi|149752097|gb|EDM62028.1| hypothetical protein DORLON_02588 [Dorea longicatena DSM 13814] Length = 456 Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 22/178 (12%), Positives = 48/178 (26%), Gaps = 7/178 (3%) Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GMSIICIANSETQLK 121 + S + G KT + + L + P I+ + + Sbjct: 241 FLQEALMKSAEKAPLVIVKGMAGTAKTFYSLAVGLEKVLNNPTGEYRRILICRPNAQFDQ 300 Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 + + + + P + +L E + + K I R + Sbjct: 301 DIGFLPGDEQEKISPL-MRPIVDNLEQLIDSDEEERYQDEQELQGKIEEIFARGLIQTEA 359 Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239 F+ + + DEA + G T I+ + +++ F D Sbjct: 360 MNFIRGRSFVKTYLIIDEAQNMTPNQ---VKGIITRAGKGTKIILLGDPNQIDRPFLD 414 >gi|195498547|ref|XP_002096570.1| GE25739 [Drosophila yakuba] gi|194182671|gb|EDW96282.1| GE25739 [Drosophila yakuba] Length = 1495 Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 30/211 (14%), Positives = 56/211 (26%), Gaps = 11/211 (5%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + G+GKT + A +M P I+ +A + + + A ++P Sbjct: 77 NTLVVLPTGLGKTFIAAVLMFNFYRWYPKGKIVFMAPTRPLVSQQIHASQK----IMPFP 132 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 +Q P AEL + + D + D Sbjct: 133 SADTVQLTGQLPRPKRAELWGSKRVFFATPQVVHS---DMLETDGGSTFPFESIKLIVVD 189 Query: 199 EAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLN--GWFYDIFNIPLEDWKRYQIDT 255 EA ++ N N + S T N+ + + + + Sbjct: 190 EAHRAKGRYAYTQVVDCLMARNRNFRMLALSATPGRTMEDVAAVCQNLYISNLQVRWDTS 249 Query: 256 RTV-EGIDSGFHEGIISRYGLDSDVARIEIL 285 V I I+ +R +L Sbjct: 250 IDVQPYIHRRTIRTIVVSLKERIKESRERLL 280 >gi|319792687|ref|YP_004154327.1| terminase large subunit protein [Variovorax paradoxus EPS] gi|315595150|gb|ADU36216.1| putative terminase large subunit protein [Variovorax paradoxus EPS] Length = 591 Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 38/313 (12%), Positives = 70/313 (22%), Gaps = 74/313 (23%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + AI R +G TTL A + L IA + + Sbjct: 134 RNAILKARQLGFTTLIAILWLDHALFNGNQRCGMIAQDRETAEAIF-----------RDK 182 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 F L + + + H + R + R T H Sbjct: 183 VVFAYDHLPEEIRQRFPLARASTKELLFGHNNSSIRVATSVRGGTIHRLH--------VS 234 Query: 199 EASGT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL--------- 245 E P N+ + G F + + ++ S G FY+I Sbjct: 235 EFGKICAKFPAKANEVVTGSFQAVPLSGILVIESTAEGTEGEFYEICQRAQALVAGARKL 294 Query: 246 --EDWKRYQIDTRTVEGIDSG--------------------------------FHEGIIS 271 ++ + + E + + Sbjct: 295 TPSQYRFHFYAWWQDPNYSIDPVGVPISPEQHDYFDELETKVDVKIDPAQRAWYVEKLRN 354 Query: 272 RYGLDSDVARIEI----LGQFPQQEVNNFIPHNYIEEAMSREAIDDL--YAPLIMGCDIA 325 + + E F Q ++ + + P+ DI Sbjct: 355 DFSGKEERMWQEYPSTPEEAFQQSTAGHYYAKDMVLLRKRGAICQVPLLDLPVFTFWDIG 414 Query: 326 GEGGDKTVVVFRR 338 D T + F + Sbjct: 415 N--SDGTAIWFMQ 425 >gi|296170231|ref|ZP_06851824.1| gp2 protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895107|gb|EFG74825.1| gp2 protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 506 Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 32/278 (11%), Positives = 77/278 (27%), Gaps = 34/278 (12%) Query: 79 KCAISAGRGIGKTTLNAWMM-LWLISTRPGMSIICIANSETQLKN---TLWAEVSKWLSM 134 + ++ GK+ L + + +WL+S P +I + + + +++ L++ Sbjct: 63 RLVVTMPPRTGKSVLTSQVFPVWLLSRDPDAEVIVKSYGDALAEEHSAAARRLIAENLAV 122 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 + + Q++ + + + S ++ + Sbjct: 123 VGIELAADKQAVGRWRVAGHRGGMLAGGILSSTTGFGASVLLVDDPVKGAQEADSDAYRR 182 Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254 E K+ L + ++ + + P W+ I Sbjct: 183 RLTAE--------FKASLMTRLMPGASAIVVL--TRWHPDDLAGSLLAEPGSRWRCVNIP 232 Query: 255 TRTVEGIDSGFHEGI-----------------ISRYGLDSDVARIEILGQFPQQEVNNFI 297 + G+ + + S LG P I Sbjct: 233 AISTAGVPDALGRERSGVAMTSAVGRTAEQFREIKTEVGSRAWAAMYLGT-PTTPEGGLI 291 Query: 298 PHNYIEEAMSREAIDDLYAPLIMGCDIAGEG-GDKTVV 334 +I+ A +++G D A G GD+T + Sbjct: 292 KAAWIDT-WRLPAAPPGTVKIVVGVDPADSGEGDETGI 328 >gi|167757386|ref|ZP_02429513.1| hypothetical protein CLORAM_02936 [Clostridium ramosum DSM 1402] gi|167703561|gb|EDS18140.1| hypothetical protein CLORAM_02936 [Clostridium ramosum DSM 1402] Length = 431 Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 31/256 (12%), Positives = 68/256 (26%), Gaps = 21/256 (8%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPG----MSIICIANSETQLKNTLWAEVSKWLSMLP 136 + GRG K++ + I + + I + L+ +++ ++ + ML Sbjct: 31 WLKGGRGSLKSSFIGIEIPLGIMRDAQNGLMSNAVVIRRVKDTLRGSVYEQIKWGIYMLN 90 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 + +E+ L + + G D+ + + + + Sbjct: 91 AQEDWEIPESKLQMTYKPTGQVILFKGADNPKKLKSTKVFVGYVKYVW---------YEE 141 Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN-GWFYDIFNIPLEDWKRYQIDT 255 DE I ++I P + N W I D Sbjct: 142 CDEFESYDKI--RNINQSLLRGGPEYCVFYSFNPPESQRNWCNKQVLIKRPDTYISHTTY 199 Query: 256 RTVE--GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 + F ++ + + LG+ F + E + Sbjct: 200 LQAPREWLGEQFLIEAEHLKVINEEKYNHDYLGEVTGTGGEVFTNLDIRE---ISDDEIA 256 Query: 314 LYAPLIMGCDIAGEGG 329 ++ L G D G Sbjct: 257 VFDRLKNGLDFGYAGD 272 >gi|108862025|ref|YP_654141.1| 40 [Enterobacteria phage K1-5] gi|40787111|gb|AAR90082.1| 40 [Enterobacteria phage K1-5] Length = 632 Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 49/349 (14%), Positives = 102/349 (29%), Gaps = 80/349 (22%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT------LWA 126 ++ I A RGI KTTL+A ++ I P I+ ++ + + + ++ Sbjct: 62 FYGHKYRL-IEAPRGIAKTTLSAIYTVFRIIHEPHKRIMVVSQNAKRAEEIAGWVVKIFR 120 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM-----GIDSKHYTITCRTYSEERP 181 + MLP + + S+ + ++S I++ + Sbjct: 121 GLDFLEFMLPDIYAGDRASVKAFEIHYTLRGSDKSPSVSCYSIEAGMQGARADIILADDV 180 Query: 182 DTFVGPHNTHGMAVFND---EASGT-----------PDIINKSILGFFTELNPNRFWIMT 227 ++ G A+ + E P +N R W Sbjct: 181 ESMQNARTAAGRALLEELTKEFESINQFGDIIYLGTPQNVNSIYNNLPARGYSVRIWTAR 240 Query: 228 S-----------------------NTRRLNGWFYDIF---NIPLEDWKRYQIDTRTVEGI 261 N +G+ D E + + + + Sbjct: 241 YPSVEQEQCYGDFLAPMIVQDMKDNPALRSGYGLDGNSGAPCAPEMYDDEVLIEKEISQG 300 Query: 262 DSGF-HEGIISRYGLDSDVARIEILG------------QFPQQEVNNFI----------- 297 + F + +++ +D+D + + P ++ Sbjct: 301 AAKFQLQFMLNTRMMDADRYPLRLNNLIFTSFGTEEVPVMPTWSNDSINIIGDAPKYGNK 360 Query: 298 PHNYIEEAMSREAIDDLYAPLIMGCDIAGEG--GDKT--VVVFRRGNII 342 P +++ ++R + IM D AG G GD+T +VF G I Sbjct: 361 PTDFMYRPVARPYEWGAVSRKIMYIDPAGGGKNGDETGVAIVFLHGTFI 409 >gi|190886701|gb|ACE95266.1| M89 [Muromegalovirus G4] gi|190886866|gb|ACE95430.1| M89 [Muromegalovirus WP15B] gi|190887031|gb|ACE95594.1| M89 [Muromegalovirus C4A] Length = 671 Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 45/161 (27%), Gaps = 17/161 (10%) Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124 H S+ + R GKT ++ +L+ G+SI +A+ + + L Sbjct: 194 HFLSSQSIDLFKQKATVFLVPRRHGKTWFTIPVICFLLKNIIGISIGYVAHQKHVSQYVL 253 Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184 + M R E + + + I T Sbjct: 254 KEVEFRCKRMFSGRFMVENKDNVISV-----------------DHKIAKSTALFASCYNT 296 Query: 185 VGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225 + + DEA +ILGF + +I Sbjct: 297 NSIRGQNFNLLIVDEAHFIKKEAFNTILGFLAQNTTKIIFI 337 >gi|284921902|emb|CBG34977.1| prophage terminase, large subunit [Escherichia coli 042] Length = 553 Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 33/262 (12%), Positives = 57/262 (21%), Gaps = 27/262 (10%) Query: 22 AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81 E V F F +KG + WQ + T Sbjct: 42 PEVVERFIAFSRV--CPHVKGAMRGSPIELEPWQQFAFACILGFKVKATGRRKYTSAFIE 99 Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + R K+T+ A + W + G I A ++ + + Sbjct: 100 V--PRKNAKSTVAAILANWFLVMENGQQDIYTAAVSRDQARIVFDDARQMC--------L 149 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + L + +++ K T P DE Sbjct: 150 LSRPLRKRVNIQAHKVIHPKTNSLLKPLAAKAATIEGTNPS-----------LAIVDEYH 198 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI 261 PD S L P + + D+ +D V Sbjct: 199 LHPDNGVYSALELGMGARPEGLLFAITTSGSNVVSACKQHY----DYCCQILDGEEVNES 254 Query: 262 DSGFHEGIISRYGLDSDVARIE 283 + +D I+ Sbjct: 255 MFVLIYELDDESEVDDPAMWIK 276 >gi|283788254|ref|YP_003368119.1| terminase large subunit [Citrobacter rodentium ICC168] gi|282951708|emb|CBG91409.1| putative terminase large subunit [Citrobacter rodentium ICC168] Length = 554 Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 37/253 (14%), Positives = 72/253 (28%), Gaps = 39/253 (15%) Query: 86 RGIGKTTLNAWMMLWLIS---TRPGMSIICIANSETQLKNTL--WAEVSKWLSMLPHRHW 140 R G T A + + R G ++ + + + + A S+ + L Sbjct: 67 RRTGLTWAEAGRNVITAAKPKRRGGRNVFYVGSKQEMALEYISACALFSRAFNQLADADV 126 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 +E E+L + + + I + P G V DEA Sbjct: 127 YEQT---FWDRDKKEEILTYMIRFPNSGFKIQALSSR---PSNLRGLQGD----VVIDEA 176 Query: 201 SGTPDIINKSILGF--FTELNPNRFWIMTSN-TRRLNGWFYDIFNIPLEDWKRYQIDTRT 257 + + +++ + T I T N L + +D+ ++I Sbjct: 177 AF-HESLDELLKAAMALTMWGARVRIISTHNGVDNLFNQYIQEAREGRKDYSVHRITLDD 235 Query: 258 ------------------VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299 + + + + D E P++ +IPH Sbjct: 236 AIADGLYRRICYVTDQEWSPESEQKWRDDLYKNAPTREDA-DEEYGCI-PKKSGGAYIPH 293 Query: 300 NYIEEAMSREAID 312 IE AM R+ Sbjct: 294 ALIEMAMIRDIPI 306 >gi|328869402|gb|EGG17780.1| hypothetical protein DFA_08780 [Dictyostelium fasciculatum] Length = 1683 Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 23/207 (11%), Positives = 55/207 (26%), Gaps = 15/207 (7%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P WQ + ++ VD H + + GKT ++ +++ ++ Sbjct: 793 PDAWQRDLLDVVDKHESA------------LVVCPTSSGKTFISFYILEKVLRESNDGMA 840 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 I ++ ++ + T + ++ + + + + + Sbjct: 841 IYVSPTKALVTQTYCEVIGRFDKSYDNICGKDSSAQYRMCGIFTRDYRIDEQKCQILITV 900 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 C + DE + +I LN ++ S T Sbjct: 901 PQCLELLLLSVSNSNYLS--KIKYIIFDEVHQIANGTEGAIWESLLLLN-PGPFVALSAT 957 Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRT 257 G F D K + + Sbjct: 958 VGNTGEFKDWLQEIDPKRKIHLVQHSN 984 >gi|262403670|ref|ZP_06080228.1| phage protein [Vibrio sp. RC586] gi|262350174|gb|EEY99309.1| phage protein [Vibrio sp. RC586] Length = 550 Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 48/381 (12%), Positives = 99/381 (25%), Gaps = 47/381 (12%) Query: 9 QKLEQELHEMLMHAECVLSFKNF--------VMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 ++ ++E A+ F F F ++ Q E + Sbjct: 43 RQEKEEKARKKRRAKSKHDFSYFCQTYMPDAFTLVFSEYQLALTRLAANRNLNRQDEALF 102 Query: 61 A--VDVHCHSNVNNSNPTIFKCAI-SAGRGIGKTT-LNAWMMLWLISTRPGMSIICIANS 116 +D H + ++ + R GKTT M LWL PG I+ S Sbjct: 103 KELIDPRDHGFIKQPISGEYEGILDIEPRDHGKTTRNTQAMPLWLALNHPGSFIVICGAS 162 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 K + + L + ++ + + + + Sbjct: 163 ADSAKEMM--------DAIKDDLEDNELILDDYGEQRGNTWTKRKIKLANGSSIVAVGRG 214 Query: 177 SEERPDTFVGPHNTHGMA--VFND---EASGTPDIINKSILGFFTELNPNRFWIMTSN-- 229 R TH + + +D E+ + L I+ + Sbjct: 215 QRLRGIKNKYQRPTHIICDDLLDDKEVESPTLRRQAERWFKRVIMNLGKGALTIIANTIM 274 Query: 230 -TRRLNGWFYDIFNIPL-EDWKRYQIDTRTV---EGIDSGF-HEGIISRYGLDSDVARIE 283 L + +W + T S + + + ++ E Sbjct: 275 HPDDLPSRLLNQIEDGRLPNWLGLRFSAITPSGRPLFPSRWSLQDLENKRIASGSAWWTE 334 Query: 284 ILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA-PLIMGCDIAGEG---GDKTVVVF--R 337 + + P + + ++ + DL + M D A G GD + + R Sbjct: 335 WMNR-PIADEDADFKEDWFV--YFKPYELDLRDCTIGMAVDPA-TGLKKGDWSFIAVVAR 390 Query: 338 R----GNIIEHIFDWSAKLIQ 354 + + W +Q Sbjct: 391 HKITMVDHVLFAKGWKESDLQ 411 >gi|118576805|ref|YP_876548.1| superfamily II helicase [Cenarchaeum symbiosum A] gi|118195326|gb|ABK78244.1| superfamily II helicase [Cenarchaeum symbiosum A] Length = 614 Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 29/264 (10%), Positives = 64/264 (24%), Gaps = 31/264 (11%) Query: 40 IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99 + P+ +QL V S + +S G GKT + + Sbjct: 183 EEVIPISEIKPLKNFQLNMRAQVLQILQSRGG-------RAIVSLPTGSGKTRMVVEAAV 235 Query: 100 WLI-STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 L+ + P +I+ IA++ ++ + + + Sbjct: 236 ALLNQSGPDKNILWIADT-QEVCEQAVVCFKQIWERYGKGG---------ILNIYRTWGD 285 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG-TPDIINKSIL----- 212 D + + + + DEA + + Sbjct: 286 NDLPVYDEHGIIVASIQKLSASSEKLDSLR-ENLSTIIIDEAHHSIAPSYVEVLEHLGLS 344 Query: 213 --GFFTELNPNRFWIMTSNTRRLN--GWFYDIFNIPLED--WKRYQIDTRTVEGIDSGFH 266 G TE + I S T G + N+ + + + G+ + Sbjct: 345 RSGSETENDSRIPLIGLSATPERKEPGGTRKLHNMYRNNTVYPCQKFSPSAERGVSFDDN 404 Query: 267 EGIISRYGLDSDVARIEILGQFPQ 290 + + +F Sbjct: 405 WQNMDYMRKKLTQWKYLADAEFVS 428 >gi|300724267|ref|YP_003713585.1| putative terminase large subunit [Xenorhabdus nematophila ATCC 19061] gi|297630802|emb|CBJ91471.1| putative terminase large subunit [Xenorhabdus nematophila ATCC 19061] Length = 553 Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 40/317 (12%), Positives = 73/317 (23%), Gaps = 42/317 (13%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 WQ + V + ++ A I R K+T+ A + W + G Sbjct: 70 EPWQQFAFANLFGF---KVKATGRRKYRSAYIQVPRKNAKSTVAAILANWFLVMEQGQQD 126 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 I A ++ + S L ++ + K Sbjct: 127 IYTAAVSRDQARIVF-------------------DDARQMSLLSKPLKKRVVIQQHKVTY 167 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 + + T+ DE PD S L P + Sbjct: 168 PKTNSLLKPLAAKAATIEGTNPSLAIVDEYHLHPDNAVYSALELGMGARPEGILFAITTA 227 Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290 D+ +D + +D + I+ Sbjct: 228 GSNVISACKQHY----DYCCQILDGEEQNESLFALIYELDDENEIDDETLWIKANPNLDV 283 Query: 291 QEV-----NNF-----IPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGN 340 + IP + E R I MG EG K + N Sbjct: 284 SVDSAALHDTIQKARGIPSQWTEMLTKRFNIWCQGETPWMG-----EGAWKACLSDYDEN 338 Query: 341 IIEHIFDWSAKLIQETN 357 ++ + ++ + T Sbjct: 339 DLKGLECYAGLDLSSTG 355 >gi|227355219|ref|ZP_03839624.1| phage terminase, large subunit [Proteus mirabilis ATCC 29906] gi|227164680|gb|EEI49541.1| phage terminase, large subunit [Proteus mirabilis ATCC 29906] Length = 577 Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 45/369 (12%), Positives = 99/369 (26%), Gaps = 58/369 (15%) Query: 2 PRLISTDQKLEQE-LHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 R + + EQ L + + V+ F V++ +GKP WQ + Sbjct: 41 ARHLKDLNEAEQRGLVWDVETVKRVIDFFAKVLKLNGGEHEGKPFILL----PWQCFVIG 96 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSET 118 ++ ++ ++ + +G+G GK+ + + L+ + P + A + Sbjct: 97 SIFGWKMTDGTRRFRMVY---VESGKGSGKSPMAGGVGLYCLVADSEPRAEVYAAATKKD 153 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 Q L+ + + P + G E + T + Sbjct: 154 QAM-ILFRDAVAMVDQSP-----ALSQRITKSGGTGKEWNLAYLK--------TSSFFRP 199 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR-RLNGWF 237 D DE + ++ T+ M +N+ Sbjct: 200 ISSDDGQS--GPRPHCALIDEIHEHKNNTAVEMMRAGTKGRRQALIFMITNSGHDKTSVC 257 Query: 238 YDIFNIPL---------EDWKRYQIDTRTVEGI-------------------DSGFHEGI 269 YD + + Y + D E + Sbjct: 258 YDYHEYGRKVAEGTIEDDSFFSYICSLDEGDDPFKDESCWGKANPSLGYTFSDRYLREQV 317 Query: 270 ISRYGLDSDVARIEIL--GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE 327 G+ + + + L Q+ + +++ + D G D++G Sbjct: 318 TQARGMPAKESIVRRLNFCQWVDADNPWINSETWMQCENTFTFDDLQGEECYGGLDLSGT 377 Query: 328 GGDKTVVVF 336 D T + Sbjct: 378 -KDLTALAL 385 >gi|27452831|gb|AAO12336.1| cleavage/packaging protein [Porcine lymphotropic herpesvirus 3] Length = 684 Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 22/141 (15%), Positives = 46/141 (32%), Gaps = 15/141 (10%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GKT + + L+++ + I +A+ + + N ++ E+ + + F Sbjct: 219 PRRHGKTWIVVAITSILLTSIEDLHIGYVAHQKH-VSNAVFTEIMNTM------YRFFPS 271 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 L ++ S TC ++ DEA+ Sbjct: 272 KDIEVKRENGTILFKREGKKPSTLMCATCF--------NKNSIRGQTFNLLYIDEANFIK 323 Query: 205 DIINKSILGFFTELNPNRFWI 225 +ILGF + + +I Sbjct: 324 KDALPTILGFMLQKDAKLIFI 344 >gi|312066345|ref|XP_003136226.1| helicase [Loa loa] gi|307768612|gb|EFO27846.1| helicase [Loa loa] Length = 798 Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 19/170 (11%), Positives = 45/170 (26%), Gaps = 16/170 (9%) Query: 39 GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98 G L+ + +Q + + + + + + G GKT ++ Sbjct: 314 ENLGIDLKSSTNLRPYQEKSLRKMFGNSRARSG--------VIVLPC-GAGKT-----LV 359 Query: 99 LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 +T + +A S ++ W K S + + P + Sbjct: 360 GVTAATTVNKRCLVLATSNVSVEQ--WRGQFKLWSTIRDDQLIRFTREARDPVPSGSNAN 417 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208 + + I + + + + V DE P + Sbjct: 418 KPIVCISTYSMVAYTGKRTYAAEEAMKYIESREWGLVLLDEVHTIPAKMF 467 >gi|253689540|ref|YP_003018730.1| hypothetical protein PC1_3171 [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756118|gb|ACT14194.1| protein of unknown function DUF264 [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 589 Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 35/323 (10%), Positives = 86/323 (26%), Gaps = 37/323 (11%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 F+ + + + + + R IG T A L T G + I ++ S+ Sbjct: 141 FLSEIFEYQRGWHQAGLQHRIRNILKS-RQIGATFYFAREALIDALTT-GRNQIFLSASK 198 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177 Q + + ++ + L ++ ++ + + + + Sbjct: 199 AQAH-VFKNYIIDFARLVDVDLKGDPMVLPNGARLFFLGTNIRTAQSYTGNLYLDEYFWI 257 Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL--------NPNRFWIMTSN 229 + + + TP + S F++ + + S+ Sbjct: 258 PKFQELRKVASGMSLHKKWRSTYFSTPSSLAHSAYPFWSGELFNKGRSNKADHLHLDLSH 317 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 G W++ + G + F + + ++ +F Sbjct: 318 ANLSGGVLC-----GDGQWRQIVTVEDALSGGCNLFDLDQLMLEY-SPAEYQNLLMCEFV 371 Query: 290 QQEVNNFIPHNYIEEAM------SREAIDDL-----YAPLIMGCDIAGEGGDKT---VVV 335 + + P ++ M + Y P+ +G D + G D V+ Sbjct: 372 D-DKASVFPFEELQRCMVDALEEWEDFNPYALRPFAYKPVWIGYDPSHTG-DSAGCVVLA 429 Query: 336 FRRGN----IIEHIFDWSAKLIQ 354 + I F W Sbjct: 430 PPQAPGGKFRILERFQWKGMDFA 452 >gi|170581278|ref|XP_001895614.1| helicase [Brugia malayi] gi|158597374|gb|EDP35540.1| helicase, putative [Brugia malayi] Length = 798 Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 19/170 (11%), Positives = 45/170 (26%), Gaps = 16/170 (9%) Query: 39 GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98 G L+ + +Q + + + + + + G GKT ++ Sbjct: 314 ENLGIDLKSSTNLRPYQEKSLRKMFGNSRARSG--------VIVLPC-GAGKT-----LV 359 Query: 99 LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 +T + +A S ++ W K S + + P + Sbjct: 360 GVTAATTVNKRCLVLATSNVSVEQ--WRGQFKLWSTIRDDQLIRFTREARDPVPSGSNAN 417 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208 + + I + + + + V DE P + Sbjct: 418 KPIVCISTYSMVAYTGKRTYAAEEAMKYIESREWGLVLLDEVHTIPAKMF 467 >gi|261226632|ref|ZP_05940913.1| putative portal protein [Escherichia coli O157:H7 str. FRIK2000] Length = 554 Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 37/253 (14%), Positives = 72/253 (28%), Gaps = 39/253 (15%) Query: 86 RGIGKTTLNAWMMLWLIS---TRPGMSIICIANSETQLKNTL--WAEVSKWLSMLPHRHW 140 R G T A + + R G ++ + + + + A S+ + L Sbjct: 67 RRTGLTWAEAGRNVITAAKPKRRGGRNVFYVGSKQEMALEYISACALFSRAFNQLADADV 126 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 +E E+L + + + I + P G V DEA Sbjct: 127 YEQT---FWDRDKKEEILTYMIRFPNSGFKIQALSSR---PSNLRGLQGD----VVIDEA 176 Query: 201 SGTPDIINKSILGF--FTELNPNRFWIMTSN-TRRLNGWFYDIFNIPLEDWKRYQIDTRT 257 + + +++ + T I T N L + +D+ ++I Sbjct: 177 AF-HESLDELLKAAMALTMWGARVRIISTHNGVDNLFNQYIQEAREGRKDYSVHRITLDD 235 Query: 258 ------------------VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299 + + + + D E P++ +IPH Sbjct: 236 AIADGLYRRICYVTGREWSPESEQKWRDDLYKNAPTREDA-DEEYGCI-PKKSGGAYIPH 293 Query: 300 NYIEEAMSREAID 312 IE AM R+ Sbjct: 294 ALIEMAMIRDIPI 306 >gi|239941274|ref|ZP_04693211.1| hypothetical protein SrosN15_09791 [Streptomyces roseosporus NRRL 15998] gi|239987730|ref|ZP_04708394.1| hypothetical protein SrosN1_10528 [Streptomyces roseosporus NRRL 11379] gi|291444714|ref|ZP_06584104.1| phage terminase [Streptomyces roseosporus NRRL 15998] gi|291347661|gb|EFE74565.1| phage terminase [Streptomyces roseosporus NRRL 15998] Length = 558 Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 35/379 (9%), Positives = 78/379 (20%), Gaps = 70/379 (18%) Query: 33 MRFFPWGIKGKPLEHFSQ-----PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRG 87 W I+ P + Q EF+ + + + + +S RG Sbjct: 17 YYVLDWMIENLAQPGRDDGEPFVPSQEQAEFL---CDYYELHPVTGKRIVHRGLLSRPRG 73 Query: 88 IGKTTLNAWMML----------------------WLISTRPGMSIICIANSETQLKNTLW 125 GK+ + L W P + A +E Q NT Sbjct: 74 WGKSPFVGAIALAEACADVVPDGFDAYGEPIGRPWHSIRTP--LVRIAAVTEQQTDNTWV 131 Query: 126 AEVSKWL-SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY-------S 177 + L + E+ ++ + S S Sbjct: 132 PLLEMARGGSLSTDYGLEVLDTVIYLPRGEISPITSSATSVKGDPACFASLDQTEEWKES 191 Query: 178 EERPDTFVGPHNTHGMAV--FNDEASGTPDIINKSILGFFTE--------LNPNRFWIMT 227 + + + + Sbjct: 192 NGGVKLAKTLRFNAVKLGGSIIETPNAYTPGEGSVAENSAADYQAILDGRSRARGILVDH 251 Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG----IDSGFHEGIISRYGLDSDVA--- 280 + + + D+ D G G+ Sbjct: 252 REAPGDTDMTDEQSLVAGLRYAY--GDSSDHPDGCVLHDPPCAPGWSPIEGITGAFWDTS 309 Query: 281 --RIEILGQF---PQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG----DK 331 ++ F + ++ + A + + + +++G D + + D Sbjct: 310 NEPQDLRADFLNQITHAADAWLSQPEVRAATDLDRVVEDDDRIVLGFDGSRKRSRGVTDA 369 Query: 332 TVV--VFRRGNIIEHIFDW 348 T + + I W Sbjct: 370 TALIGCRLSDGHLFEIGVW 388 >gi|153818431|ref|ZP_01971098.1| conserved hypothetical protein, putative [Vibrio cholerae NCTC 8457] gi|126510990|gb|EAZ73584.1| conserved hypothetical protein, putative [Vibrio cholerae NCTC 8457] Length = 550 Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 54/392 (13%), Positives = 103/392 (26%), Gaps = 67/392 (17%) Query: 8 DQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCH 67 D++ ++E A+ F F + P FS +QL + Sbjct: 42 DRQEKEEKARNKRRAKSKHDFAYFCQTYMP----DAFTLAFS---EYQLALTRLAA---N 91 Query: 68 SNVNNSNPTIFKCAI---------------------SAGRGIGKTT-LNAWMMLWLISTR 105 N+N + +FK I R GKTT M LWL Sbjct: 92 RNLNRQDEALFKELIDPRDHGFIKQPISGEYEGILDIEPRDHGKTTRNTQAMPLWLALNH 151 Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 PG I+ S K + + L + ++ + + Sbjct: 152 PGSFIVICGASADSAKEMM--------DAIKDDLEDNELILDDYGEQRGNTWTKRKIKLA 203 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMA--VFND---EASGTPDIINKSILGFFTELNP 220 + + R TH + + +D E+ + L Sbjct: 204 NGSSIVAVGRGQRLRGIKNKYQRPTHIICDDLLDDKEVESPTLRRQAERWFKRVIMNLGK 263 Query: 221 NRFWIMTSN---TRRLNGWFYDIFNIPL-EDWKRYQIDTRTV---EGIDSGF-HEGIISR 272 I+ + L + +W + T S + + + ++ Sbjct: 264 GALTIIANTIMHPDDLPSRLLNQIEDGRLPNWLGLRFSAITPSGRPLFPSRWSLQDLENK 323 Query: 273 YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA-PLIMGCDIAGEG--- 328 E + + P + + ++ + DL + M D A G Sbjct: 324 RIASGSAWWTEWMNR-PIADEDADFKEDWF--IYFKPYELDLRDCTIGMAVDPA-TGLKK 379 Query: 329 GDKTVVVF--RR----GNIIEHIFDWSAKLIQ 354 GD + + R + + W +Q Sbjct: 380 GDWSFIAVVARHKITMVDHVLFAKGWKESDLQ 411 >gi|118468638|ref|YP_885629.1| type III restriction enzyme, res subunit [Mycobacterium smegmatis str. MC2 155] gi|118169925|gb|ABK70821.1| type III restriction enzyme, res subunit [Mycobacterium smegmatis str. MC2 155] Length = 566 Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 50/181 (27%), Gaps = 16/181 (8%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + + N + + + G GKT ++ + + +I +A Sbjct: 170 QRDACKQSQNRLRMNPH-------RVLLHMPTGSGKTRTAMHIIASELRQQEPTLVIWLA 222 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 S +L +E K L R W + L+ + D + Sbjct: 223 YS-EELCEQAASEFEKAWHYLGDRELKTY-------RMWGSRDLDINDVRDGFMVAGLAK 274 Query: 175 TYSEERPDTFVGPHN-THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233 T+ + D V DEA + +L + N + + T Sbjct: 275 TFELMKRDPDFLARMADRVSLVIIDEAHQAIAQTYRLVLEVLCDRNEETKLLGLTATPGR 334 Query: 234 N 234 Sbjct: 335 T 335 >gi|326559990|gb|EGE10387.1| terminase [Moraxella catarrhalis 7169] gi|326569691|gb|EGE19743.1| terminase [Moraxella catarrhalis BC1] Length = 564 Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 26/306 (8%), Positives = 67/306 (21%), Gaps = 54/306 (17%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ+ K I R GK+ + A + ++ G Sbjct: 83 ESWQIFACCLPFGWIKRATG--FRRYTKILIFVCRKNGKSAIAAGIGNYMFCADGEFGAE 140 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 + A +E Q + ++ ++ + + + + + Sbjct: 141 VYSGATTEKQAWEVFRPAKIMVERTKALKDFYGIEVNASNMARLADGSRFEPIIGKPGD- 199 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPNRFWIMTS 228 + DE + + ++ ++T+ Sbjct: 200 -------------------GSSPSCAIIDEYHEHKNNDLYDTMETGMGAREQPIMLVITT 240 Query: 229 NTRRLNGWFYDIFNIPL----------------------EDWKRYQIDTRTVEGIDSGFH 266 + G + + +DW + +D Sbjct: 241 AGSSIGGACHQMVRDAEKMLDGVMDIPDLWAVLYGMDKDDDWTSEIALKKANPNMDISVS 300 Query: 267 EGIISRYGLD-------SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319 + D + R + L ++ + + P Sbjct: 301 AEFLQARQRDAKMSAAKQAIFRTKHLNEWVGAKNAWLNMAKWANAPERLPLSALTGRPCF 360 Query: 320 MGCDIA 325 +G D+A Sbjct: 361 IGLDLA 366 >gi|328543298|ref|YP_004303407.1| Large terminase subunit [polymorphum gilvum SL003B-26A1] gi|326413044|gb|ADZ70107.1| Large terminase subunit [Polymorphum gilvum SL003B-26A1] Length = 470 Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 35/285 (12%), Positives = 72/285 (25%), Gaps = 48/285 (16%) Query: 84 AGRGIGKTTLNAWMMLWL-ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 GR IG + A+ + + + Q + L+ E K + + Sbjct: 34 KGRQIGLSWSTAYACVSRTALAGARHDQWVSSRDDIQAR--LFLEDCKLWASGIDLAARD 91 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS- 201 + ++ G ++ + + + + + PD G DE + Sbjct: 92 LGEQAIDEDGKHSAYV---LRFSNGRRIHSMSS----NPDAQAGKRGGR----VLDEFAL 140 Query: 202 -GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR---- 256 P + T + S R +F + E +I Sbjct: 141 HPDPRKLWSIAYPGITWGGN---MEVISTHRGSGNFFNQLVREARESGNPKKISLHRVTL 197 Query: 257 --------------------TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 + + + + D + E + Q P + F Sbjct: 198 QDALDDGFLWKLQQSLPEDDERQEMTEADYYDWVKAGCADEESFLQEYMCQ-PADDDAAF 256 Query: 297 IPHNYIEEAMSREAIDD---LYAPLIMGCDIAGEGGDKTVVVFRR 338 + ++ I L G DI + D TV+ Sbjct: 257 LEYDLIAACEYPGDSPWRTMEGGRLFAGIDIGRK-RDLTVLWVVE 300 >gi|329945026|ref|ZP_08292976.1| hypothetical protein HMPREF9056_00859 [Actinomyces sp. oral taxon 170 str. F0386] gi|328529487|gb|EGF56391.1| hypothetical protein HMPREF9056_00859 [Actinomyces sp. oral taxon 170 str. F0386] Length = 370 Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 52/175 (29%), Gaps = 12/175 (6%) Query: 60 EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119 ++ S + I+ RG+GKT + + S R ++ + Sbjct: 21 RVIEEFLESLDDGPGAPGLLELITGARGVGKTVMLTAL---GDSARERGWVVVDETAREG 77 Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 L + L E ++ LS L + + SLSL + + R ++ Sbjct: 78 LMDRLATEFTRQLSQLAGKERSRLTSLSLSTPLGGGSATLEHAPAPEPSWRQKARALTQW 137 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF---FTELNPNRFWIMTSNTR 231 + H T + DE P +++ +M + Sbjct: 138 LAE-----HGTGLLLTI-DEVHAIPREELRALSAEVQHLIREGAPIGLLMAGLPK 186 >gi|258427139|ref|ZP_05688061.1| terminase large subunit [Staphylococcus aureus A9299] gi|258445566|ref|ZP_05693748.1| terminase large subunit [Staphylococcus aureus A6300] gi|258455564|ref|ZP_05703521.1| phage terminase, large subunit [Staphylococcus aureus A5937] gi|257849917|gb|EEV73876.1| terminase large subunit [Staphylococcus aureus A9299] gi|257855613|gb|EEV78546.1| terminase large subunit [Staphylococcus aureus A6300] gi|257862252|gb|EEV85023.1| phage terminase, large subunit [Staphylococcus aureus A5937] Length = 566 Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 55/381 (14%), Positives = 100/381 (26%), Gaps = 63/381 (16%) Query: 19 LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78 + E F+ F KG + QP WQ + ++ H Sbjct: 54 MFDEELAHRPIRFIE-KFCKPSKGSKRQLVLQP--WQHFIIGSLFGWVHK--ETKLRRYK 108 Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLP 136 + I GR GKTT + + + +S G I +AN Q + L+ E + P Sbjct: 109 EALIFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKASP 167 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 +L E + + + + + + Sbjct: 168 -------------------KLRENFRPLRDEIHYDATISKIMPQASDSDKLDGLNTHMGI 208 Query: 197 NDEASGTPD-IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255 DE D + I +T+ +L+G D+ + + D Sbjct: 209 FDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVDMVEAGRDTLDQIIEDE 268 Query: 256 RT----------------------VEG----IDSGFHEGIISRYGLDSDV---ARIEILG 286 RT ID + + + Sbjct: 269 RTFYYLASLDDDDDINDSSNWIKANPNLGVSIDLDEMKEEWEKAKRTPAERGDFITKRFN 328 Query: 287 QFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLIMGCDIAGEGGDKTV----VVFRRGNI 341 F + +FI + +++ + P +G D++ D T G + Sbjct: 329 IFANNDEMSFIDYPTLQKNNDIISLDELEGRPCTIGYDLSET-EDFTAACATFALDNGKV 387 Query: 342 IEHIFDWSAKLIQETNQEGCP 362 W K E + E P Sbjct: 388 AVLTHSWIPKHKVEYSNEKIP 408 >gi|307329066|ref|ZP_07608233.1| Terminase [Streptomyces violaceusniger Tu 4113] gi|306885261|gb|EFN16280.1| Terminase [Streptomyces violaceusniger Tu 4113] Length = 491 Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 47/173 (27%), Gaps = 20/173 (11%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 WQ ++ + ++ N S+P ++ R GK + LW + I+ Sbjct: 41 DPWQRFVLDE-GMGEKADGNWSSPE---VCVNVPRQCGKGGIIEARELWGLYVGGEQLIL 96 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A+ KN + + + + P H W E Sbjct: 97 HSAHEFKTAKNA-FKRIERLIRSTPDLH-------KRVKRYWQTVGEE-------GIELH 141 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224 T + G + DE D ++ ++ + W Sbjct: 142 TGQLLRFIARSGGSG-RGFTADCIVLDEDMILGDDAMAALAPTLAAVDNPQTW 193 >gi|254510524|ref|ZP_05122591.1| phage DNA Packaging Protein [Rhodobacteraceae bacterium KLH11] gi|221534235|gb|EEE37223.1| phage DNA Packaging Protein [Rhodobacteraceae bacterium KLH11] Length = 141 Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 16/143 (11%), Positives = 31/143 (21%), Gaps = 26/143 (18%) Query: 82 ISAGRGIGKTTLNAWMMLWL------ISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 I GRG GKT A + + + + + + Q+++ + S L Sbjct: 2 IMGGRGAGKTRAGAEWVRSMVEGSLPLDKGEACRVALVGETFDQVRDVMIFGDSGILQCS 61 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 P ++ G A Sbjct: 62 PPDRRPVWKASERKL------------------VWPNGAEAQAFSAHDPEGLRGPQFDAA 103 Query: 196 FNDEASGTPD--IINKSILGFFT 216 + DE + + Sbjct: 104 WVDELAKWKKAGETWDMLQFALR 126 >gi|60681904|ref|YP_212048.1| hypothetical protein BF2425 [Bacteroides fragilis NCTC 9343] gi|265763954|ref|ZP_06092522.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|60493338|emb|CAH08123.1| hypothetical protein BF2425 [Bacteroides fragilis NCTC 9343] gi|263256562|gb|EEZ27908.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 568 Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 47/177 (26%), Gaps = 15/177 (8%) Query: 79 KCAISAGRGIGKTTLN----AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 + GRG+ K+T+ + ++ + PG + + N+ T L++ + V + Sbjct: 36 NLVVVGGRGLAKSTVIQARRSADCVYDM---PGAPLAFVGNTYTNLRDNIMPAVKTGWEL 92 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 + S P W + D + Sbjct: 93 MGLYEGVHYVSSCRPPESWRRRCSVIVDDYKNTVSFFNGCIIFLGSLDHPSLLAGKSVVH 152 Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFW--------IMTSNTRRLNGWFYDIFNI 243 +F DE+ PD + I T L G + F Sbjct: 153 LFFDESKYAPDNKVNRAMPVLRGDAIRYGCSHYFLGVTITTDMPDVLEGEYDWYFRY 209 >gi|53713628|ref|YP_099620.1| hypothetical protein BF2339 [Bacteroides fragilis YCH46] gi|52216493|dbj|BAD49086.1| hypothetical protein [Bacteroides fragilis YCH46] Length = 568 Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 47/177 (26%), Gaps = 15/177 (8%) Query: 79 KCAISAGRGIGKTTLN----AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 + GRG+ K+T+ + ++ + PG + + N+ T L++ + V + Sbjct: 36 NLVVVGGRGLAKSTVIQARRSADCVYDM---PGAPLAFVGNTYTNLRDNIMPAVKTGWEL 92 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 + S P W + D + Sbjct: 93 MGLYEGVHYVSSCRPPESWRRRCSVIVDDYKNTVSFFNGCIIFLGSLDHPSLLAGKSVVH 152 Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFW--------IMTSNTRRLNGWFYDIFNI 243 +F DE+ PD + I T L G + F Sbjct: 153 LFFDESKYAPDNKVNRAMPVLRGDAIRYGCSHYFLGVTITTDMPDVLEGEYDWYFRY 209 >gi|194289059|ref|YP_002004966.1| bacteriophage p2 gpp capsid protein; terminase, atpase subunit [Cupriavidus taiwanensis LMG 19424] gi|193222894|emb|CAQ68899.1| bacteriophage P2 GPP capsid protein; Terminase, ATPase subunit [Cupriavidus taiwanensis LMG 19424] Length = 593 Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 34/294 (11%), Positives = 75/294 (25%), Gaps = 21/294 (7%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 FM+++ + + + + R IG T A TR G + I ++ S+ Sbjct: 146 FMDSMFDYQRVWYEAGLVERIRNILKS-RQIGATWYFAREAFIDALTR-GRNQIFLSASK 203 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177 Q + + L + ++ ++ + + + Sbjct: 204 AQAHVFKHYIIQFAKDAAGVELKGDPLVLPNGATLYFLGTNARTAQSYHGNLYLDEYFWI 263 Query: 178 EERPDTFVGPHNTHGMAVF----NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233 + + A + S G + + Sbjct: 264 QRFQELRKVASGMAIHAKWRQTYFSTPSSLAHEAYPFWSGALFNRGRRKDQHVQV--DVS 321 Query: 234 NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293 + W++ V G + F + R D+D ++ F + Sbjct: 322 HAHLQAGRRCADGQWRQVVTVEDAVRGGCNLFDLEQLRREYSDAD-FENLLMCGFID-DT 379 Query: 294 NNFIPHNYIEEAMSREAIDDLY-----------APLIMGCDIAGEGGDKTVVVF 336 + P + + M + +G D G GGD +V Sbjct: 380 ASVFPLSMLMRCMVDSWEVWEDFRHWSPRPLGNREVWVGYDPNGGGGDSAALVV 433 >gi|29566200|ref|NP_817768.1| gp7 [Mycobacterium phage Rosebush] gi|29424925|gb|AAN01849.1| gp7 [Mycobacterium phage Rosebush] Length = 564 Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 49/336 (14%), Positives = 85/336 (25%), Gaps = 49/336 (14%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM-MLWLISTRPGMSIICIANS 116 + + + +++ I+ GK+T+ + +L + P II Sbjct: 70 ALWLIAEAIEALLHSPPGVTRNLLITCPPQEGKSTMASVYTVLRALQLNPNARIILACYG 129 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 + S+ L RH ++ L+ G + Sbjct: 130 QDLA-----HGHSRKCRDLIKRHGSGVRDAMTGAQIEDKLGLKLERGANKVSEWSIEGGS 184 Query: 177 SEERPDT-FVGPHNTHGMAVFND-------EASGTP-----DIINKSILGFFTELNPNRF 223 D EA D+ ++ Sbjct: 185 GGLVATGLGGTITGKPADLFIIDDPYKHMSEADSATYRAKVDLWMATVATTRLAPGAPTI 244 Query: 224 WIMTS-NTRRLNG---WFYDIFNIPLEDWKRYQIDTRTVEGI----DSGFHEGIISRYGL 275 I T + L G W+ I EGI D E ++S G Sbjct: 245 LIQTRWHPEDLAGKVLTAELELPKAQRTWRHINIPAIAEEGIKDALDRAPGEAMVSARGR 304 Query: 276 DSD------------VARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL--IMG 321 + V G P ++ E R P+ I+G Sbjct: 305 TKEQFEATKRKVGDRVWYAMYQGS-PTNPAGGLFQRSWFE---DRRLTGTPILPVASIVG 360 Query: 322 CDIAGEG-GDKTVVV---FRRGNIIEHIFDWSAKLI 353 D A G GD+T ++ I + DWS ++ Sbjct: 361 IDPADSGEGDETGIIAGTLTGDGTIALVEDWSGQMT 396 >gi|298693633|gb|ADI96855.1| terminase-large subunit [Staphylococcus aureus subsp. aureus ED133] Length = 563 Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 49/348 (14%), Positives = 90/348 (25%), Gaps = 60/348 (17%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ + ++ H + I GR GKTT + + + +S G Sbjct: 81 QPWQHFIIGSLFGWVHK--ETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAE 138 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I +AN Q + L+ E + P +L E + + + Sbjct: 139 IHLLANVMKQAR-ILFDESKAMIKASP-------------------KLRENFRPLRDEIH 178 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTS 228 + + + DE D + I +T+ Sbjct: 179 YDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITT 238 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRT----------------------VEG----ID 262 +L+G ++ + R D RT ID Sbjct: 239 AGYQLDGPLVNMVEAGRDTLDRIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSID 298 Query: 263 SGFHEGIISRYGLDSDV---ARIEILGQFPQQEVNNFIPHNYIEEAMSR-EAIDDLYAPL 318 + + D + F +FI + +++ + P Sbjct: 299 LDEMKEEWEKAKRTPDERGDFITKRFNIFANNNEMSFIDYPTLQKNNEIVSLEELEGRPC 358 Query: 319 IMGCDIAGEGGDKTV----VVFRRGNIIEHIFDWSAKLIQETNQEGCP 362 +G D++ D T G + W K E + E P Sbjct: 359 TIGYDLSET-EDFTAACATFALDNGKVAVLTHSWIPKHKVEYSNEKIP 405 >gi|315619700|gb|EFV00221.1| protein gp28 [Escherichia coli 3431] Length = 554 Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 37/253 (14%), Positives = 72/253 (28%), Gaps = 39/253 (15%) Query: 86 RGIGKTTLNAWMMLWLIS---TRPGMSIICIANSETQLKNTL--WAEVSKWLSMLPHRHW 140 R G T A + + R G ++ + + + + A S+ + L Sbjct: 67 RRTGLTWAEAGRNVITAAKPKRRGGRNVFYVGSKQEMALEYISACALFSRAFNQLADADV 126 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 +E E+L + + + I + P G V DEA Sbjct: 127 YEQT---FWDRDKKEEILTYMIRFPNSGFKIQALSSR---PSNLRGLQGD----VVIDEA 176 Query: 201 SGTPDIINKSILGF--FTELNPNRFWIMTSN-TRRLNGWFYDIFNIPLEDWKRYQIDTRT 257 + + +++ + T I T N L + +D+ ++I Sbjct: 177 AF-HESLDELLKAAMALTMWGARVRIISTHNGVDNLFNQYIQEAREGRKDYSVHRITLDD 235 Query: 258 ------------------VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299 + + + + D E P++ +IPH Sbjct: 236 AIADGLYRRICYVTDQEWSPESEQKWRDDLYKNAPTREDA-DEEYGCI-PKKSGGAYIPH 293 Query: 300 NYIEEAMSREAID 312 IE AM R+ Sbjct: 294 ALIEMAMIRDIPI 306 >gi|258545857|ref|ZP_05706091.1| probable terminase (atpase subunit) related protein [Cardiobacterium hominis ATCC 15826] gi|258518873|gb|EEV87732.1| probable terminase (atpase subunit) related protein [Cardiobacterium hominis ATCC 15826] Length = 595 Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 43/359 (11%), Positives = 88/359 (24%), Gaps = 73/359 (20%) Query: 39 GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98 P + + F+ + H + +S + + + R IG T A Sbjct: 126 EQSNAPKISTDEVEELRRAFLANIYPHQRAWYEHSKRYEMRQYVKS-RQIGATYYFAQEA 184 Query: 99 LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 L T G + I I+ S++Q H F+ ++ L Sbjct: 185 LITALTT-GKNQIFISASKSQA------------------HVFKSNIVAFVEKTIGKTLR 225 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFT 216 + + + + T +T ++ DE P I G Sbjct: 226 GEHIKLGPETTLYFLGT----NSNTAQSYSGD----LYVDEYFWIPQFAKIQHVASGMTV 277 Query: 217 ELNPNRFWIMT-SNTRRLNGWFYDIFNIPLEDWKRYQID-------------TRTVEGID 262 + + T S T + + K I+ Sbjct: 278 HDDRRITYFSTPSTTTHEAYPLWTGQHFNKGRPKSEHINLDVSHAALKEGRLCEDGYFRQ 337 Query: 263 SGFHEGIISRYGL-----------DSDVARIEILGQFPQQEVNNFIPHNYIEEAM----- 306 E I+ ++ QF ++ ++ M Sbjct: 338 LITIEDAINSGFDRVTLEKLRIKFPPGQFENLLMCQFVNDG-DSIFKMAELQRCMVDAWT 396 Query: 307 -SREAIDDLYAP-----LIMGCDIAGEGGDKT--VVVF--RRGNIIEHIF--DWSAKLI 353 ++ P + +G D + D + V+ G + I ++ Sbjct: 397 VWQDYTPLAARPLGDVPVWIGYDPSRSQDDASLVVIAPPQVEGGVFRIIDKQSFNGLDF 455 >gi|303251439|ref|ZP_07337615.1| Putative terminase large subunit [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252326|ref|ZP_07534223.1| Phage D3 terminase-like protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307261236|ref|ZP_07542911.1| Phage D3 terminase-like protein [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|302649671|gb|EFL79851.1| Putative terminase large subunit [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860248|gb|EFM92264.1| Phage D3 terminase-like protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306868967|gb|EFN00769.1| Phage D3 terminase-like protein [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 556 Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 41/344 (11%), Positives = 77/344 (22%), Gaps = 54/344 (15%) Query: 22 AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81 +E V F F +KG + WQ+ + + Sbjct: 42 SEIVERFLKFSKV--CPHVKGHLRGKAIELSDWQVFLFANILGFKYRFTGLRKYRSAYIQ 99 Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 ++ R K+T+ A + W + G I A ++ Sbjct: 100 VA--RKNAKSTVAAVLANWFLVMEKGQQDIYTAAVSRDQARIVF---------------- 141 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + + L ++ K + T+ DE Sbjct: 142 ---DDARQMAVLSKPLKKRVQIQQHKMIYPQNNSLMRPLAAKSSTIEGTNPSLAIVDEYH 198 Query: 202 GTPDIINKSILGFFTELNPNRFWIMT----SNTRRLNGWFYDIF---------------- 241 PD S L P SNT YD Sbjct: 199 LHPDNSVYSALELGQGARPEGLLFAITTAGSNTISACKQHYDYCCQILDGNEQNESIFIM 258 Query: 242 -------NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF--PQQE 292 + + + + + + I E I++ + +F Sbjct: 259 IFELDDESEVDDPSQWIKANPNIGKSIPFQDFENTIAKARGIPSEWVEMLTKRFNVWCNG 318 Query: 293 VNNFIPHNYIEEAMSREAIDD-LYAPLIMGCDIAGEGGDKTVVV 335 ++ + D MG D++ D T + Sbjct: 319 STPWLGEGNWKACERSYQETDLHGKECYMGLDLSST-NDLTSIC 361 >gi|29566410|ref|NP_817976.1| gp3 [Mycobacterium phage Che9d] gi|29425135|gb|AAN07921.1| gp3 [Mycobacterium phage Che9d] Length = 506 Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 31/315 (9%), Positives = 68/315 (21%), Gaps = 63/315 (20%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 RWQ + A + +I+ R GKT ++ + +RPG + Sbjct: 48 DRWQEDIWYAALGLREDGTLACDVMGVTLSIA--RQAGKTWGVMVGLVAICLSRPGTLAV 105 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 ++ + TL +++ + R Q A + + + + Sbjct: 106 WSSHHDRTSSQTL-DKIAGIVERPEIRPKMRAQH------PVVATDDNRGVHFANGSKIL 158 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 S + DE D +L ++ Sbjct: 159 FGARSSGFGRG------FSEVDIQVYDECQNLKDSALTDMLAAM-NVSEIGLAFFMGTPP 211 Query: 232 RLNGWFYDIFNIPLEDWKRYQID-------------TRTVEGIDSGFHEG---------- 268 R + + + Sbjct: 212 RPQEVALGVHEAFKRRRDKALAPVKKRPFKGIYVEFAPESPETVVADIDAPRFWEKLAEV 271 Query: 269 -------------IISRYGLDSDVARIEILGQFPQQEVN-NFIPHNYIEE-AMSREAIDD 313 + + R E+ G + + +P + A + + Sbjct: 272 NPSFGFRVGKSAIERLVENMSPEDVRREVFGIWDKTNETLAVVPRDQWNNLAADVDVDPE 331 Query: 314 LYAPLIMGCDIAGEG 328 D+A G Sbjct: 332 ---------DVAAYG 337 >gi|222151774|ref|YP_002560930.1| hypothetical protein MCCL_1527 [Macrococcus caseolyticus JCSC5402] gi|222120899|dbj|BAH18234.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 568 Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 32/303 (10%), Positives = 84/303 (27%), Gaps = 59/303 (19%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRP----GMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 +S R GK+ + + + + I + + Q N ++ L+ L Sbjct: 98 VSTARKQGKSIIVNGVAQYELIFGKSPIREREIYISSLTYKQA-NVIFKMSKSQLNQLKK 156 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + + +++ + + E ++ + T+ Sbjct: 157 KSGYFKKNIRIISTEIEHIPSESTI---------------MALANNPDAVDGTNPSVAIL 201 Query: 198 DEASGTPDIINKSILGF-FTELNPNRFWIM------TSNTR----------------RLN 234 DE +G PD S L ++ I+ +N + Sbjct: 202 DEFAGMPDTEMYSRLKTGMSQQENPLTLIVSTAGDDLTNPMYAEEYQYIKKLLNEEIEDD 261 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTV-EGIDSG------------FHEGIISRYGLDSDVAR 281 +F + E+ + +++ + + + S + Sbjct: 262 NYFVYCAEMDSEEEISDEDKWIKAMPLLENDKKRAVILKNIKADIKEQEEKGKMTSIKIK 321 Query: 282 IEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTV--VVFRRG 339 + Q + ++F+ N S +A + + +G D++ V + Sbjct: 322 NFNMWQAASDKEDSFVKVNDWNSN-SIDAPELMNTDCWIGVDLSRLHDISAVTPIHAIDD 380 Query: 340 NII 342 N + Sbjct: 381 NKM 383 >gi|323169496|gb|EFZ55169.1| protein gp28 [Shigella sonnei 53G] Length = 554 Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 37/253 (14%), Positives = 72/253 (28%), Gaps = 39/253 (15%) Query: 86 RGIGKTTLNAWMMLWLIS---TRPGMSIICIANSETQLKNTL--WAEVSKWLSMLPHRHW 140 R G T A + + R G ++ + + + + A S+ + L Sbjct: 67 RRTGLTWAEAGRNVITAAKPKRRGGRNVFYVGSKQEMALEYISACALFSRAFNQLADADV 126 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 +E E+L + + + I + P G V DEA Sbjct: 127 YEQT---FWDRDKKEEILTYMIRFPNSGFKIQALSSR---PSNLRGLQGD----VVIDEA 176 Query: 201 SGTPDIINKSILGF--FTELNPNRFWIMTSN-TRRLNGWFYDIFNIPLEDWKRYQIDTRT 257 + + +++ + T I T N L + +D+ ++I Sbjct: 177 AF-HESLDELLKAAMALTMWGARVRIISTHNGVDNLFNQYIQEAREGRKDYSVHRITLDD 235 Query: 258 ------------------VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299 + + + + D E P++ +IPH Sbjct: 236 AIADGLYRRICYVTDQEWSPESEQKWRDDLYKNAPTREDA-DEEYGCI-PKKSGGAYIPH 293 Query: 300 NYIEEAMSREAID 312 IE AM R+ Sbjct: 294 ALIEMAMIRDIPI 306 >gi|239835184|ref|ZP_04683510.1| Hypothetical protein OINT_3000017 [Ochrobactrum intermedium LMG 3301] gi|239821160|gb|EEQ92731.1| Hypothetical protein OINT_3000017 [Ochrobactrum intermedium LMG 3301] Length = 508 Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 51/348 (14%), Positives = 85/348 (24%), Gaps = 62/348 (17%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 P+ Q EFM + F+ I R G +TL M+L Sbjct: 40 HPNDAQEEFMRKL--------------WFRNLIPKARQRGFSTLVQLMILDACLFVLNTK 85 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLP------------HRHWFEMQSLSLHPSGWYAEL 157 IA + ++ LP + E ++ S G A Sbjct: 86 AAIIAQDLELARAIRDDKIMFAYDRLPDFVLRNVPLVVDNAKRLEWKNGSEMIIGTTARG 145 Query: 158 LEQSMGIDSKH-YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP-DIINKSILGFF 215 S S++ + + P +G + A G D K + Sbjct: 146 RTLSWLHVSEYGEICAKNPEHAKEIQSGALPAAEYGTIIIEATAQGADGDFTTKVMQAKA 205 Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275 + + + R ++D +ED + I + D Sbjct: 206 VAESGR--QLTRKDYRLHFASWWDAPEYEVEDPEHITISPKDHAYFDRMEGLIGREISLN 263 Query: 276 DSDVARIEILGQFPQQEVNNF--IPHNYIEE--------------------AMSREAIDD 313 + +F + + P E D Sbjct: 264 KRAWYVQQRDVEFSGDQEMMWSQFPTTLEEAFQQSTEGKFLADQLSLARRQGRIGVFKHD 323 Query: 314 LYAPLIMGCDIAGEGGDKTVVVFRR--GNIIEHIFDWSAKLIQETNQE 359 P+ DI D T + F + GN+ I E N E Sbjct: 324 PSKPVYTFWDIG--TDDDTAIWFMQINGNMFHFI------DFYECNGE 363 >gi|86131010|ref|ZP_01049609.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134] gi|85818421|gb|EAQ39581.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134] Length = 886 Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 25/205 (12%), Positives = 50/205 (24%), Gaps = 37/205 (18%) Query: 32 VMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT 91 +PW +Q F++ H + + + A G GKT Sbjct: 6 FQFIYPW-------------RTYQERFLKDFQDHIADDHLH---------VVAPPGSGKT 43 Query: 92 TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151 L MM R + +A + T + + E + ++ S Sbjct: 44 VLGLEMM-----RRVDKCTLVLAPTIT---------IRNQWEERMFECFIEQEKCTIPLS 89 Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211 + + + + + DEA + K + Sbjct: 90 RNIKKPAHITFATYQSLHAFAKNEMEGDMERVLNFFAQAGIKNIVLDEAHHLKNEWWKPL 149 Query: 212 LGFFTELNPNRFWIMTSNTRRLNGW 236 EL +T+ + Sbjct: 150 F-ALKELPECTITALTATPPYDSDQ 173 >gi|260888732|ref|ZP_05899995.1| type I restriction-modification system R subunit [Selenomonas sputigena ATCC 35185] gi|330839870|ref|YP_004414450.1| type III restriction protein res subunit [Selenomonas sputigena ATCC 35185] gi|260861485|gb|EEX75985.1| type I restriction-modification system R subunit [Selenomonas sputigena ATCC 35185] gi|329747634|gb|AEC00991.1| type III restriction protein res subunit [Selenomonas sputigena ATCC 35185] Length = 742 Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 30/287 (10%), Positives = 74/287 (25%), Gaps = 41/287 (14%) Query: 37 PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96 P G + ++P +Q E + + H + + +S G GKT + A Sbjct: 330 PDGHPDLAGDIVNRP--YQQEAVWRICEDVHRG-------VRRLLVSTPPGTGKTRMAAG 380 Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156 + L+ + ++ +A+ E + ++ +LP ++ + Sbjct: 381 AIEALLHQKAVSKVLYLADREELVHQAY----EQFRMLLPDAKLVDLLGDVREEAQADIV 436 Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG-TPDIINKSIL--- 212 ++ +D+ + + T P H V DE+ D + Sbjct: 437 FATATIMMDAVNESRTETGARLYDP--------AHFDLVIIDESHPSIYDDHLVILNYFD 488 Query: 213 ---------GFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + + Y + + W Sbjct: 489 AILLGFSSLPPTAPGEAEVYRFYDLAPGKPT-FAYSLAEALRDGWLVDFTLRDEAPEGVM 547 Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310 +A +E + ++ A++ Sbjct: 548 EPRLLYADLTEEQRTIAEMEY------SDTGAIASKDFDVPAVNNWL 588 >gi|281416525|ref|YP_003347326.1| terminase large subunit [Enterococcus phage phiFL2A] gi|270209389|gb|ACZ63932.1| terminase large subunit [Enterococcus phage phiFL2A] gi|270209454|gb|ACZ63996.1| terminase large subunit [Enterococcus phage phiFL2B] Length = 430 Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 41/281 (14%), Positives = 81/281 (28%), Gaps = 34/281 (12%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + A RG KTT A + L+ P +II + ++T + E+ ++ + +F Sbjct: 48 LLAHRGSFKTTTLAIAIALLMVLFPNKNIIFLRKTDTDV-----VEIILQVAKVLSSKYF 102 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + +L+ L E + +D+ T + T + H V D+ Sbjct: 103 KTLVFALYGVEL-VLLKETTTEVDTNLKTSSRGTSQLLGMGIYASLTGKHADIVITDDIV 161 Query: 202 GTPDIINKS--------ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253 D ++++ N +I T + + Sbjct: 162 NIKDRVSRAERERTKLQYQELQNVKNRGGRFINTGTPWHKEDAISKM-------PNVKKF 214 Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 D ID + + A E+ + + ++++ Sbjct: 215 DCYETGLIDKEQRQALQQAMTPSLFAANYELK---HIADSESLFTAPTYTDSINLIYNGV 271 Query: 314 LYAPLIMGCDIAGEGGDKTVVVFR----RGNIIEHIFDWSA 350 + D A G D T G II + W Sbjct: 272 AH------VDAAYGGDDSTAFTIFKEQKDGTIIGYGRKWQK 306 >gi|149198974|ref|ZP_01876015.1| hypothetical protein LNTAR_19957 [Lentisphaera araneosa HTCC2155] gi|149137969|gb|EDM26381.1| hypothetical protein LNTAR_19957 [Lentisphaera araneosa HTCC2155] Length = 882 Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 23/192 (11%), Positives = 50/192 (26%), Gaps = 19/192 (9%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q ++A++ H K I A G GKTTL + + + + Sbjct: 14 RPYQQRVLDALEEHLDDK---------KLHIVAAPGAGKTTLG-----IEVFRKLEKNAL 59 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL---HPSGWYAELLEQSMGIDSKH 168 ++ + +++ + + W L + + A + + Sbjct: 60 VLSPT-RIIRDQWLNRLEDFCDFSMDLPWLSRSLDELASFNSVTYQALYSKLRGAGEEGS 118 Query: 169 YTITCRTYSEERPDTF-VGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227 +E F A+ DEA K + +T Sbjct: 119 EVDGAIKLTETAVKDFVDLLEKHKIGALILDEAHHLRSEWYKVLDELMQLKEDLTIVSLT 178 Query: 228 SNTRRLNGWFYD 239 + + Sbjct: 179 ATPPYDSKGHEW 190 >gi|109521765|ref|YP_655687.1| gp7 [Mycobacterium phage Qyrzula] gi|91980709|gb|ABE67427.1| gp7 [Mycobacterium phage Qyrzula] Length = 566 Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 49/336 (14%), Positives = 85/336 (25%), Gaps = 49/336 (14%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM-MLWLISTRPGMSIICIANS 116 + + + +++ I+ GK+T+ + +L + P II Sbjct: 72 ALWLIAEAIEALLHSPPGVTRNLLITCPPQEGKSTMASVYTVLRALQLNPNARIILACYG 131 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 + S+ L RH ++ L+ G + Sbjct: 132 QDLA-----HGHSRKCRDLIKRHGSGVRDAMTGAQIEDKLGLKLERGANKVSEWSIEGGT 186 Query: 177 SEERPDT-FVGPHNTHGMAVFND-------EASGTP-----DIINKSILGFFTELNPNRF 223 D EA D+ ++ Sbjct: 187 GGLVATGLGGTITGKPADLFIIDDPYKHMSEADSATYRAKVDLWMATVATTRLAPGAPTI 246 Query: 224 WIMTS-NTRRLNG---WFYDIFNIPLEDWKRYQIDTRTVEGI----DSGFHEGIISRYGL 275 I T + L G W+ I EGI D E ++S G Sbjct: 247 LIQTRWHPEDLAGKVLTAELELPKAQRTWRHINIPAIAEEGIKDALDRAPGEAMVSARGR 306 Query: 276 DSD------------VARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL--IMG 321 + V G P ++ E R P+ I+G Sbjct: 307 TKEQFEATKRKVGDRVWYAMYQGS-PTNPAGGLFQRSWFE---DRRLTGTPILPVASIVG 362 Query: 322 CDIAGEG-GDKTVVV---FRRGNIIEHIFDWSAKLI 353 D A G GD+T ++ I + DWS ++ Sbjct: 363 IDPADSGEGDETGIIAGTLTGDGTIALVEDWSGQMT 398 >gi|293364905|ref|ZP_06611622.1| Res subunit family type III restriction enzyme [Streptococcus oralis ATCC 35037] gi|307703158|ref|ZP_07640104.1| type III restriction enzyme, res subunit [Streptococcus oralis ATCC 35037] gi|291316355|gb|EFE56791.1| Res subunit family type III restriction enzyme [Streptococcus oralis ATCC 35037] gi|307623233|gb|EFO02224.1| type III restriction enzyme, res subunit [Streptococcus oralis ATCC 35037] Length = 877 Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 24/191 (12%), Positives = 61/191 (31%), Gaps = 20/191 (10%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 ++Q + ++ + + ++A G GKTT+ ++ P + ++ Sbjct: 11 RQYQKQVLDLFQDYQADGHVH--------LVAAP-GSGKTTIGIELIARF--GNPALVLV 59 Query: 112 CIANSETQLKNTL---WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 Q + + + E + +S L ++ EM++L++ + + Q + Sbjct: 60 PTVTIREQWVDRIQTAFLENEQKISDLVSQNLKEMKALTIVTYQAFHSAMNQLQSQEDGE 119 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 D + DE + KS+ F + P + +T+ Sbjct: 120 AEDFV------GFDLLASLRAQKVATLCLDECHHLRNEWWKSLEAFRKQYGPLKLISLTA 173 Query: 229 NTRRLNGWFYD 239 + Sbjct: 174 TPPYDSDPELW 184 >gi|154502292|ref|ZP_02039352.1| hypothetical protein RUMGNA_00105 [Ruminococcus gnavus ATCC 29149] gi|153797171|gb|EDN79591.1| hypothetical protein RUMGNA_00105 [Ruminococcus gnavus ATCC 29149] Length = 611 Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 30/241 (12%), Positives = 65/241 (26%), Gaps = 30/241 (12%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 I A R K+ + A +PG I+ + + Q K + ++ L Sbjct: 72 VCIVACRAAAKSFIIALYACCKAIIKPGSKIVLGSATRGQSKLIISEKIKNEL------- 124 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 ++ S + ++ ++ + + +E Sbjct: 125 --------MNMSPALRKEIKDIKDSANESIVYFNNGSTIKVFTANEFARGLRSTDAVREE 176 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 I+ S++ F + F I FY+ ED K I + Sbjct: 177 FRQIDKNIDDSVISPFQTIRQAPFMI---------DPFYEGIECLKEDPKDIYISSSW-- 225 Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319 D + ++ + D R ++ F + + I + P+ Sbjct: 226 LDDGHWMWNLVDQAYTDMLNNRTSVMLAF----DESITLKHNIRTQRQMQQEKKKQDPIT 281 Query: 320 M 320 Sbjct: 282 W 282 >gi|302422104|ref|XP_003008882.1| DEAD/DEAH box helicase [Verticillium albo-atrum VaMs.102] gi|261352028|gb|EEY14456.1| DEAD/DEAH box helicase [Verticillium albo-atrum VaMs.102] Length = 1801 Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 41/322 (12%), Positives = 89/322 (27%), Gaps = 45/322 (13%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P WQ + ++ +D + + A GKT ++ + M ++ + Sbjct: 754 PDAWQRKVLDTIDANNS------------LMVVAPTSAGKTFISFYAMKKILQANDDDVL 801 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + +A ++ + +++ + + + + T Sbjct: 802 VYVAPTKALVNQIAAEVAARYSKSYTREGKSVWAIHTRDYRVNNPTGCQVLVTVPHVLQT 861 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 + + +RP + + DE + + L I S T Sbjct: 862 MLLAPSNSDRPSAW----ARRVKRIIFDEVHCIGQAEDGIVWEQLLLL-APCPIIALSAT 916 Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290 G F+D V G+ ++ SD+ R + Q Sbjct: 917 VGNAGEFHD---------------WLAVSQAQKGYKMELVVHNARYSDL-RKFVYCPPKQ 960 Query: 291 QEVNNF-----IPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHI 345 +++ +P I++ R P+ DI D + R + Sbjct: 961 LKMDVLAKQDQLPIPGIDQGEERNPRFFFTHPIAALLDINRGSLDDVSLEPRDCWTL--- 1017 Query: 346 FDWSAKLIQETNQEGCPVGSSI 367 W +T PV S+ Sbjct: 1018 --WKCMDKHQTTD--FPVAKSL 1035 >gi|319427942|gb|ADV56016.1| Protein of unknown function DUF3427 [Shewanella putrefaciens 200] Length = 1055 Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 34/226 (15%), Positives = 61/226 (26%), Gaps = 28/226 (12%) Query: 10 KLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSN 69 E A N + G + +P Q E +E + Sbjct: 279 WQSNEFELFSGDANSKEKLNNALKEAKGSGTESSSFHFDIKPFAHQREILEQLA------ 332 Query: 70 VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129 V S FK I A G GKT ++A+ P + + +A+ + L +S Sbjct: 333 VERSVHGRFKNLIVAATGTGKTIISAFDFARFYKLHPEANFLFVAHRQ----EILQQALS 388 Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189 + +L + + E+ P+ + + S + Sbjct: 389 AYRGVLKNNQFGELWVAEHKPNSYKH---------------LFASIQSLNLQLDNLPLAA 433 Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 + DE G P +T+ R +G Sbjct: 434 DFYDYIVIDEVHHVAANSY---RGLLAHFEPTILLGLTATPERHDG 476 >gi|296274267|ref|YP_003656898.1| type III restriction protein res subunit [Arcobacter nitrofigilis DSM 7299] gi|296098441|gb|ADG94391.1| type III restriction protein res subunit [Arcobacter nitrofigilis DSM 7299] Length = 1044 Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 58/185 (31%), Gaps = 28/185 (15%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P +Q E +E ++ FK I A G GKT ++A+ + + Sbjct: 318 PFHYQEEILEQLEAQ------RKIHNRFKNLIVAATGTGKTVISAFDYKRFKNLNSKAKL 371 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + +A+ + LK L L + + ++ I ++H Sbjct: 372 LFVAHRKEILKQAL-----------------ATFRGVLRDNNFGELWVDGETAISNEHLF 414 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 ++ +T + + + + DE + NP +T+ Sbjct: 415 VSVQTLQNNIGN--LNLSKEYYDFIIIDEVHHISANSY---RPILEKFNPKILLGLTATP 469 Query: 231 RRLNG 235 R++ Sbjct: 470 ERMDN 474 >gi|322412526|gb|EFY03434.1| terminase large subunit [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 435 Score = 48.0 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 36/269 (13%), Positives = 73/269 (27%), Gaps = 23/269 (8%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 ++ + RG K+ A + + +++ I K + + + + L Sbjct: 33 NFYRV-VKGSRGSKKSKTTALNFVVRLLKYEWANLLVIRRYSNTNKQSTYTDFKWACNQL 91 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 H F+ + + + I R +E T + Sbjct: 92 KVSHLFKFNES------------LPEITVKATGQKILFRGLDDELKITSITVDVGALCWA 139 Query: 196 FNDEASGTPDI-----INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NIPLED 247 + +EA + +SI G + + +T N W +F D Sbjct: 140 WFEEAYQIETEDKFSTVVESIRGTLDVPDFFKQITVTFNPWSERHWLKRVFFDEETKRAD 199 Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307 R E +D Y + ARI G++ E F ++ + Sbjct: 200 TFSGTTTFRVNEWLDDVDKRRYEDLYKTNPRRARIVCDGEWGVAEGLVFDNFEVVDFDVE 259 Query: 308 REAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 + G D T++ Sbjct: 260 KTIQRIKETS--AGMDFGFTQDPTTLICV 286 >gi|238027628|ref|YP_002911859.1| Bbp25 [Burkholderia glumae BGR1] gi|237876822|gb|ACR29155.1| Bbp25 [Burkholderia glumae BGR1] Length = 486 Score = 48.0 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 5/74 (6%) Query: 276 DSDVARIEILGQFPQQEVN---NFIPHNYIEEAMSREAIDDLYAPLI--MGCDIAGEGGD 330 + + G F + IP ++ A R + +G D+A G D Sbjct: 256 PEPLRSKMLYGDFAAGREDDPWQVIPSEWVRLAQERWRARSRPRIPMTALGVDVARGGQD 315 Query: 331 KTVVVFRRGNIIEH 344 +++ R GN + Sbjct: 316 QSIYTPRYGNWFDE 329 >gi|30089892|ref|NP_839922.1| putative terminase large subunit [Lactococcus phage P335 sensu lato] gi|21954681|gb|AAM83070.1|AF489521_31 putative terminase large subunit [Lactococcus phage 4268] Length = 646 Score = 48.0 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 44/372 (11%), Positives = 101/372 (27%), Gaps = 57/372 (15%) Query: 15 LHEMLMHAECVLSFKNFVMRF-----FPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSN 69 L ++ F V F ++ WQ + + Sbjct: 67 LQDLKRIGNEDFPFNYEVKHVKRLMKFSKMAPNVDTMEPTKLMEWQKFMLSLL---IGWR 123 Query: 70 VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129 + IS GRG GKT + A +M + + + ++ L + ++ Sbjct: 124 NKEGGKRFSRAIISVGRGQGKTYMLAILMAYSFF---------VESRGLSNQDFLVSSIN 174 Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI--TCRTYSEERPDTFVGP 187 + + + M ++ + W + + + + + + Sbjct: 175 AKQTGKLYGYLKSMINVLRTINPWKNIADKTDLSLQADKIIMRNHNNVIRPISHEAGQYD 234 Query: 188 HNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL 245 + H DE + I+K + G N I T+ + D + Sbjct: 235 -SYHFTTAIFDEIGEVKSREKISKIVSGQVKVPNRQFVQISTAYPDPTVPFHEDEKMLQQ 293 Query: 246 -------EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV------------------- 279 D Y + + +D + + D+ Sbjct: 294 AMEQDFLRDADTYLCLIWSNDSLDETYKPETWVKSNPLLDLASEHDNLMQGLLDKRDNDV 353 Query: 280 -------ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKT 332 + + L + ++++++ +E+A+ E +G D + D T Sbjct: 354 LTGAVHDFQCKNLNMWLSSDIDSYLNLADVEKAIVPEFNI-YGQRCYVGVDYSMS-SDNT 411 Query: 333 VVVFRRGNIIEH 344 V F + E Sbjct: 412 AVAFVYPYVSEE 423 >gi|315575102|gb|EFU87293.1| conserved hypothetical protein [Enterococcus faecalis TX0309B] gi|315582529|gb|EFU94720.1| conserved hypothetical protein [Enterococcus faecalis TX0309A] Length = 407 Score = 48.0 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 29/238 (12%), Positives = 54/238 (22%), Gaps = 26/238 (10%) Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 + + + I + + L+ R E ++ Sbjct: 1 MAGGKKDTTDIIMQHVTDTLQTV---------DESIARKLLEPVDKLERLQTGLSKRKIS 51 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI--LGFFTEL 218 G S + + DE++ + + F Sbjct: 52 FSGGGSIEGISLGEHFKGNKSGNQAIGRGGD---YIIDESAFVSNETYAELGRRNFANVD 108 Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISR-----Y 273 N SN G FYD K + V I + + Sbjct: 109 GKNYLSFEISNP-HNKGRFYDKLTQ-ENIPKGMLVVWADVRTAFEEDRVKSIEQVISSEF 166 Query: 274 GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDK 331 + + L + P + + E E + +G D A +G DK Sbjct: 167 FQNKSTCQRYFLCELPDENEDGMFGTPQTE-----EEHTEKNWEYFLGVDSAYKGKDK 219 >gi|291550695|emb|CBL26957.1| Predicted ATPase related to phosphate starvation-inducible protein PhoH [Ruminococcus torques L2-14] Length = 479 Score = 48.0 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 23/178 (12%), Positives = 47/178 (26%), Gaps = 7/178 (3%) Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GMSIICIANSETQLK 121 + + G KT + + L + P I+ + Q Sbjct: 264 FLQEALMQPAEKAPLVIVKGMAGTSKTFYSLAVGLEKLMNHPTGEYRKILVCRPN-AQFD 322 Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 + + + +L E + + K I R + + Sbjct: 323 EGIGFLPGDEQEKISPLMRPVLDNLEQLLDSNEDERYKDEEVLRDKVEEIYSRGFIQAEA 382 Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239 F+ + + DEA T I G T + I+ + +++ F D Sbjct: 383 LNFIRGRSIVKTYLIIDEAQNTTPDQ---IKGIITRAGKDTKIILLGDPNQIDRPFLD 437 >gi|298385368|ref|ZP_06994926.1| bacteriophage terminase large subunit [Bacteroides sp. 1_1_14] gi|298261509|gb|EFI04375.1| bacteriophage terminase large subunit [Bacteroides sp. 1_1_14] Length = 622 Score = 48.0 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 34/261 (13%), Positives = 78/261 (29%), Gaps = 21/261 (8%) Query: 31 FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90 FV G + L ++P Q F+E ++ + + R G Sbjct: 33 FVYIKNKGGGEDV-LFRLTRP---QRRFVERLEK------LRIAGKPIRIILLKARQWGG 82 Query: 91 TTLNAWMMLWLISTRP-GMSIICIANS---ETQLKNTLWAEVSKW-LSMLPHRHWFEMQS 145 +T + M WL G++ + IA+ ++K+ + K+ + ML ++ Sbjct: 83 STTSQLYMAWLQLLHKIGLNSLIIAHQGAGSDEIKDMFDRMIKKYPVEMLHKIDELYNEN 142 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 + + + + K T R + H + E D Sbjct: 143 EPKLVGVGKSGSIYRVPQRNCKIKIGTAERPDSCRGGDYNLVHLSEVGIWKATEGKKPED 202 Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE---DWKRYQIDTRTVEGID 262 I+ + G + + S +F+ + + ++ + +E Sbjct: 203 IVRSACSGILLKPY--TMIVYESTANGTGNFFHREYTAAKKGDSQFEAMFVSWFDIEQYT 260 Query: 263 SGFHEGIISRYGLDSDVARIE 283 F+ + G + + Sbjct: 261 LAFNSD-KEKQGFAEWLYKNR 280 >gi|224535178|ref|ZP_03675717.1| hypothetical protein BACCELL_00039 [Bacteroides cellulosilyticus DSM 14838] gi|224523228|gb|EEF92333.1| hypothetical protein BACCELL_00039 [Bacteroides cellulosilyticus DSM 14838] Length = 571 Score = 48.0 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 34/278 (12%), Positives = 71/278 (25%), Gaps = 37/278 (13%) Query: 79 KCAISAGRGIGKTTLN----AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 SAGRG+ K+T+ + ++ + PG ++ AN+ T L + + V + Sbjct: 36 NLITSAGRGMAKSTVIQARRSADCVYDM---PGAALAFAANTYTNLTDNIMPAVKTGWEL 92 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 + S P W + D + Sbjct: 93 MGLYEGVHYISNKRPPESWRKRCSIIVDDYKNTISFWNGSIIFLGSLDHPSLLAGKSVVH 152 Query: 195 VFNDEASGTPDIINKSILGFFTE-----LNPNRFWIMTSNTRRL------NGWFYDIFNI 243 +F DEA D + + + F +T T W++ + Sbjct: 153 LFFDEAKYDQDKKVNRAMPILRGDAIRYGHSHYFLGVTITTDMPDVLEGEYDWYFRYVKL 212 Query: 244 PLE----------------DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287 K + + + D Y + + + Sbjct: 213 MKPERILKIVQAAGELNELRIKLVREENKESPSPDKLRRIKKKIIYYEAALLKMRKGESY 272 Query: 288 FPQQEVNN---FIPHNYIEEAMSREAIDDLYAPLIMGC 322 F + YI++ + + ++G Sbjct: 273 FINASSFTNIDILTIGYIKQLFNGTLELHEFKKSVVGM 310 >gi|320590344|gb|EFX02787.1| dead deah box DNA helicase [Grosmannia clavigera kw1407] Length = 2423 Score = 48.0 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 36/154 (23%), Gaps = 22/154 (14%) Query: 58 FMEAVDVHCHSNVNNSNPTIF--------KCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +EA+ N IF + + G GKT M W RPG Sbjct: 1160 VLEAIYAERFRFFNPMQTQIFHTLYHSSANVLLGSPTGSGKTVAAELAMWWAFRERPGSK 1219 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ IA + ++ + W L + L + Sbjct: 1220 VVYIAPMKALVRER----IKDWGRRLAGPAGLRLVEL--------TGDNTPDTRTIGEAD 1267 Query: 170 TITCRTYSEERPDTFVGPHN--THGMAVFNDEAS 201 I + V DE Sbjct: 1268 VIVTTPEKWDGISRSWQTRGYVRKVSLVIIDEIH 1301 >gi|1107479|emb|CAA62591.1| ORF5 [Streptomyces phage phiC31] Length = 138 Score = 48.0 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 4/88 (4%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG---MS 109 WQ E + V + R GK+T+ A +ML+ + G Sbjct: 51 PWQRELLIDAYVLTQDTFGRWRRKHRTVVVCVARKNGKSTIAAAIMLYHLIADRGDAQRQ 110 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPH 137 II AN Q + ++ + ++ P Sbjct: 111 IIAAANDRNQAR-MVFDSAKQMVNASPK 137 >gi|86130662|ref|ZP_01049262.1| type I site-specific deoxyribonuclease [Dokdonia donghaensis MED134] gi|85819337|gb|EAQ40496.1| type I site-specific deoxyribonuclease [Dokdonia donghaensis MED134] Length = 1168 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 31/243 (12%), Positives = 67/243 (27%), Gaps = 36/243 (14%) Query: 10 KLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVH---- 65 ++EL ++ E + P++ +Q+ + +V H Sbjct: 335 YTKKELQTIIWRRENRQDIRA------------MPIDMAITDRPYQMRAIRSVAEHWAGS 382 Query: 66 CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW 125 + A G GKT + L+ I+ +A+ + +K Sbjct: 383 DTRTGQLIGTNRRALLVLA-TGTGKTRTAISLSKILLEANWAKRILFLADRISLVKQA-- 439 Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185 ++++LP + + + I Y R + Sbjct: 440 --KRNFVNLLPDHSTVNLIETK----------DDTNARIVFSTYKTLMGLIDSSRSEDGR 487 Query: 186 GPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW-FYDIFNIP 244 H + DEA + E F +T+ + YD+F + Sbjct: 488 FYGVGHFDLIIVDEAH----RSIYNKYQTIFEYFDGLFLGLTATPKGSIDHNTYDVFGLA 543 Query: 245 LED 247 ++ Sbjct: 544 KDN 546 >gi|139645|sp|P16732|TRM3_HCMVA RecName: Full=Tripartite terminase subunit UL15 homolog; AltName: Full=DNA-packaging protein UL89; AltName: Full=Terminase large subunit gi|1813970|emb|CAA35363.1| HCMVUL89 [Human herpesvirus 5] gi|27808816|tpg|DAA00186.1| TPA: DNA packaging terminase subunit 1 [Human herpesvirus 5] Length = 674 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 48/141 (34%), Gaps = 17/141 (12%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GKT ++ +L+ G+SI +A+ + + + EV RH F Sbjct: 213 PRRHGKTWFIIPIISFLLKHMIGISIGYVAHQKH-VSQFVLKEVE-----FRCRHTFA-- 264 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + E + + ID + T S ++ + + DEA Sbjct: 265 ------RDYVVENKDNVISIDHRGAKSTALFASCYNTNS---IRGQNFHLLLVDEAHFIK 315 Query: 205 DIINKSILGFFTELNPNRFWI 225 +ILGF + +I Sbjct: 316 KEAFNTILGFLAQNTTKIIFI 336 >gi|221316528|ref|ZP_03598333.1| phage-related terminase [Bacillus subtilis subsp. subtilis str. NCIB 3610] Length = 489 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 35/280 (12%), Positives = 77/280 (27%), Gaps = 36/280 (12%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 K + GR GK+ L A + + L+ P S + +L + + EV + ++ Sbjct: 30 KSVLLIGRKSGKSFLVALIFILLLLIEPEYSEFYSVAPDKELSSIVKKEVEQTITASHPS 89 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG------ 192 + Q + + + + + + R + D N + Sbjct: 90 IQKQFQITRSEVRCLLTK--SKFIPLANSENRMDGRKANVFVADEVGALRNRYPIDAMQS 147 Query: 193 --MAVFNDEASGTPDIINKSILGFFTEL------------NPNRFWIMTSNTRRLNGWFY 238 M + N +S+ TE + + + W Sbjct: 148 SQMNMVNRTGILIS-TAYESLNNPMTEEVEYAQKVLDDLIDDPTLFALLYKPDDPKDWLS 206 Query: 239 DIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV---ARIEILGQFPQQEV-N 294 D I V + + + + + F + Sbjct: 207 DKSLIEAN-------PLAEVLEDNLEYLKKQRRTALDMPSSKKNFLTKHMNIFVDGDDSE 259 Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334 +IP + +++ M + +G D++ D T V Sbjct: 260 VYIPSDELKKNMITTYDWT-GREVFVGVDLSQT-TDNTAV 297 >gi|298695171|gb|ADI98393.1| Terminase large subunit, phage associated [Staphylococcus aureus subsp. aureus ED133] Length = 564 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 28/283 (9%), Positives = 75/283 (26%), Gaps = 55/283 (19%) Query: 82 ISAGRGIGKTTLNAWM----MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 IS R GK+ + + M +L+ + I +++ Q + + S+ ++++ Sbjct: 96 ISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQTI-FKMASQQVNLMRS 154 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + F + + + + + + Sbjct: 155 KSKFIREKTDVR---------KTDIEDILSSSVFAPLS------NNPDAVDGKDPTVAIL 199 Query: 198 DEASGTPDIINKSILGF-FTELNPNRFWIMTSNTRRLNGWFYDIF--------------- 241 DE + PD S T ++++ LN Y + Sbjct: 200 DELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEEVRADN 259 Query: 242 -----------NIPLEDWKRYQID----TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 ++ K + ++ + I ++ Sbjct: 260 YFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNIKSDIQDELEKGTSYHKILIK 319 Query: 287 QFP---QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAG 326 F Q ++ + E+A + + + +G D++ Sbjct: 320 NFNLWQAQREDSLLDIEDWEQATTNMPNIN-GKDVYIGVDLSR 361 >gi|296502322|ref|YP_003664022.1| terminase large subunit [Bacillus thuringiensis BMB171] gi|296505546|ref|YP_003667246.1| terminase large subunit [Bacillus thuringiensis BMB171] gi|296323374|gb|ADH06302.1| terminase large subunit [Bacillus thuringiensis BMB171] gi|296326598|gb|ADH09526.1| terminase large subunit [Bacillus thuringiensis BMB171] Length = 561 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 31/277 (11%), Positives = 67/277 (24%), Gaps = 31/277 (11%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP-- 136 KC + R GK+ L A ++L L+ P S + L + + E++K L P Sbjct: 104 KCVLLIARKSGKSFLTALLILILMLIEPKHSEFYSVAPDRDLSSIIKKEIAKMLDASPGI 163 Query: 137 ------HRHWFEMQSLSLHPSGWYAELLEQSMGIDSK---HYTITCRTYSEERPDTFVGP 187 + + +T Sbjct: 164 SKHFKTVLKEVRCLITKNKFEPLATSNDRMDGRLATGFVADEVGALKTSYPIEAMESSQL 223 Query: 188 HNTHGMAVFNDEA------SGTPDIINKSILGFFTEL-NPNRFWIMTSNTRRLNGWFYDI 240 + + + + A I N + + + W D Sbjct: 224 NTLNRLGILISTAYDTMHNPMVDQIEF--AQKVMDGHINDETLFALLYKPDNMKDWTSDE 281 Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV--ARIEILGQFPQQE-VNNFI 297 + + + + S + + L F + ++ Sbjct: 282 ALLQAN------PLAIELPENLDELKKKRDKAIAMPSAQTNFKTKHLNIFVDGDIAEVYV 335 Query: 298 PHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334 + + + + +G D+A + D T V Sbjct: 336 STDDLRKGKISNFDW-EGRKVHIGVDLA-QSNDNTAV 370 >gi|330911327|gb|EGH39837.1| phage terminase, large subunit [Escherichia coli AA86] Length = 555 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 38/253 (15%), Positives = 73/253 (28%), Gaps = 39/253 (15%) Query: 86 RGIGKTTLNAWMMLWLIS---TRPGMSIICIANSETQLKNTL--WAEVSKWLSMLPHRHW 140 R G T A + + R G ++ + + + + A S+ + L Sbjct: 68 RRTGLTWAEAGRNVITAAKPKRRGGRNVFYVGSKQEMALEYISACALFSRAFNQLADADV 127 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 +E E+L + + + I + P G V DEA Sbjct: 128 YEQT---FWDRNKKEEILTYMIRFPNSGFKIQALSSR---PSNLRGLQGD----VVIDEA 177 Query: 201 SGTPDIINKSILGF--FTELNPNRFWIMTSN-TRRLNGWFYDIFNIPLEDWKRYQIDTRT 257 + + +++ + T I T N L + +D+ ++I Sbjct: 178 AF-HESLDELLKAAMALTMWGARVRIISTHNGVDNLFNQYIQEAREGRKDYSVHRITLDD 236 Query: 258 ------------------VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299 + + + + D E P++ +IPH Sbjct: 237 AIADGLYRRICYVTGQEWSPESEQKWRDDLYKNAPTREDA-DEEYGCI-PKKSGGAYIPH 294 Query: 300 NYIEEAMSREAID 312 IE AMSR+ Sbjct: 295 ALIEMAMSRDIPI 307 >gi|329666845|gb|AEB92793.1| putative RNA helicase [Lactobacillus johnsonii DPC 6026] Length = 461 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 28/234 (11%), Positives = 59/234 (25%), Gaps = 23/234 (9%) Query: 37 PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96 P G +F +P + Q + A+ + A G GKT Sbjct: 15 PELQAGLEKINFKKPTKVQSSVIPAL------------LNKKNVVVQAATGSGKTHAYLI 62 Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156 +L +I ++ + +L N L+ + R + + G Sbjct: 63 PILNMIDESAPVTQAIVTAPSRELANQLYKVARQ------LRDASGLNISIEYLGGGNDR 116 Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG-TPDIINKSILGFF 215 + I + + + A DEA + Sbjct: 117 NRQIEKAESRAPQLIIATPGRLHDFASKKFINLENVKAFIIDEADMTLDMGFLSQMDEIM 176 Query: 216 TELNPNRFWIMTSN--TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267 ++L+ S +L + + P ++ I + + Sbjct: 177 SKLDKKAVLGAFSATIPVKLENFLRKYMSKP--EFIVIDNPAIIAPTIQNDLID 228 >gi|327399574|ref|YP_004340443.1| DEAD/DEAH box helicase domain-containing protein [Hippea maritima DSM 10411] gi|327182203|gb|AEA34384.1| DEAD/DEAH box helicase domain protein [Hippea maritima DSM 10411] Length = 526 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 37/303 (12%), Positives = 73/303 (24%), Gaps = 39/303 (12%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 F +P Q + + + V A G GKT ++ L+ + Sbjct: 24 GFEKPTPIQEKVIPLILQSSKDLVAE-----------APTGTGKTLAFGLPLIDLLKEKT 72 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 G I +L + E++ + + + S+ + Sbjct: 73 GYVQAVILAPTRELAIQVCDEINAFKGKKRLKAFPIYGGQSIELQ---------KRRLKE 123 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNRFWI 225 + + + DEA I T NP + Sbjct: 124 GVDIVVGTAGRIIDHINRKTLNLSKIDYFILDEADEMLNMGFIDDIKEILTHTNPTKNMF 183 Query: 226 MTS-NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 M S + E + + T + + D Sbjct: 184 MFSATMPEEIKRLAKQYMKKPEFVRIEKSKMLTSQIYFEVKEQDKFEALCRIRDAVEDFY 243 Query: 285 LGQFPQQEVNN------FIPHNYIEEAMSREAIDDLYAPL-----------IMGCDIAGE 327 F + +V+ I Y +A+ + D + ++ D+A Sbjct: 244 GLIFCKTKVDAQNVANKLIDRGYYADAIHGDLSQDKRERILKRFRDKKINMLVATDVAAR 303 Query: 328 GGD 330 G D Sbjct: 304 GID 306 >gi|296103195|ref|YP_003613341.1| hypothetical protein ECL_02853 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057654|gb|ADF62392.1| hypothetical protein ECL_02853 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 591 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 39/341 (11%), Positives = 78/341 (22%), Gaps = 56/341 (16%) Query: 38 WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97 + W E + H N+ I R IG T A+ Sbjct: 126 YKKNDISSLTQEDFDTWAEEHLFEYQKHLRRNIGQLVRN-----ILKSRQIGATWYFAFE 180 Query: 98 MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 I A+ AEV + + +F + Sbjct: 181 AFENAVMTGDPQIFLSASKAQ-------AEVFRSYIVNIAEQYFGITLT--------GNP 225 Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217 + S G + + + T + + +E + +K +F+ Sbjct: 226 IRLSNGAELRFLSTNKNTAQSYSGHLYCDEYFWVPNFAKLNEVASAMATHDKWRTTYFST 285 Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPL-----EDWKRYQIDTRTVEGIDSGFHEGIISR 272 + G + + + + R + + Sbjct: 286 PSAKTHQAY----PFWTGEEWKQGSRKRAAIKFPLFDEMRDGGRLCPDGQWRYVITMEDA 341 Query: 273 YGLDSDVARIE--------------ILGQFPQQEVNNFIPHNYIEEA---MSREAIDDLY 315 ++A IE + F ++ + +E M D Sbjct: 342 IAGGFNLANIEKLRNRYNTATFDMLYMCVFVD-SKDSVFSFSDLEACGVEMDTWQDHDPD 400 Query: 316 A-------PLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWS 349 A P+ G D A G D + V + + + Sbjct: 401 AKRPFGDRPVWGGFDPARSG-DLSCFVIV-APPMFAVEKFR 439 >gi|154482773|ref|ZP_02025221.1| hypothetical protein EUBVEN_00450 [Eubacterium ventriosum ATCC 27560] gi|149736368|gb|EDM52254.1| hypothetical protein EUBVEN_00450 [Eubacterium ventriosum ATCC 27560] Length = 614 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 26/236 (11%), Positives = 57/236 (24%), Gaps = 31/236 (13%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ E M+A+ ++ K + + +GKT + +I+C Sbjct: 51 PWQREIMDAITD----------ISVEKVVVMSAAQMGKTDAFLLNTIGYYMHYDPCTILC 100 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 + + + + ++P ++ A T+T Sbjct: 101 MQPTLSLAETMSKD------RLMPMVRDTPALRDKINEKSRTAGNTIFKKAFPGGRITMT 154 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP-----NRFWIMT 227 ++ + + DE P NR + T Sbjct: 155 G-------ANSPTELRSRPIRILLADEIDAYPPTAGAEGDPLILAGKRLTTYWNRKEVDT 207 Query: 228 SNTR-RLNGWFYDIFNIPL-EDWKRYQIDTRT-VEGIDSGFHEGIISRYGLDSDVA 280 S + + E+W S + + ++S Sbjct: 208 STPTIKGASRIEMEYEHSTMEEWNVPCPSCGELQPLEWSNLIYKVDADGEIESTTY 263 >gi|92115960|ref|YP_575689.1| phage terminase [Nitrobacter hamburgensis X14] gi|91798854|gb|ABE61229.1| phage Terminase [Nitrobacter hamburgensis X14] Length = 542 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 43/327 (13%), Positives = 90/327 (27%), Gaps = 58/327 (17%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR---PGM 108 WQ + + H + T + RG KT+L A + L PG Sbjct: 49 DPWQERIVRRIYGPRHDDGRRIVNT---VVMLLPRGNRKTSLGAALALLHTIGPERMPGS 105 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 +I A+ Q + E + + + + A + + Sbjct: 106 EVIFSASDRKQ-SGIAFKEARGIVQA--DKRLVKAT------KVYDAFNSAKKIAYPKDS 156 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMT 227 + + + V DE + + +++ + + T Sbjct: 157 VELEIISADAPSSE------GRTPAFVLADETHIWRGKDLWTVLTNGLDKIDNSLLVVTT 210 Query: 228 SNTRRLNGWFYDIFNIPLE----------------------DWKRYQIDTRTVEGIDSGF 265 + R + Y+I + + D+ ++ R G G+ Sbjct: 211 TAGRGTDNIGYEIIDRARKIARGEIVDPTVLPVLFEAEPDCDYTSEEVWRRVNPGSPHGY 270 Query: 266 ---------HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM-SREAIDDLY 315 + S + R + L + + F+ +E + Sbjct: 271 PSIEGFRRHVKRAQDNPTERSSLKRYK-LNIWEDSSSSPFVDMLVYDEGEGEIDVAALEG 329 Query: 316 APLIMGCDIAGEGGDKTVV--VFRRGN 340 P +G D++ D +VV FR G+ Sbjct: 330 QPCWLGVDLS-SSIDLSVVIACFRDGD 355 >gi|193071720|ref|ZP_03052620.1| putative phage terminase, large subunit [Escherichia coli E110019] gi|192954982|gb|EDV85485.1| putative phage terminase, large subunit [Escherichia coli E110019] Length = 553 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 33/261 (12%), Positives = 56/261 (21%), Gaps = 27/261 (10%) Query: 23 ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82 E V F F +KG + WQ + T + Sbjct: 43 EVVERFIAFSRV--CPHVKGAMRGSPIELEPWQQFAFACILGFKVKATGRRKYTSAFIEV 100 Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 R K+T A + W + G I A ++ + + Sbjct: 101 --PRKNAKSTTAAILANWFLIMENGQQDIYTAAVSRDQARIVFDDARQMC--------LL 150 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 + L + +++ K T P DE Sbjct: 151 SRPLRRRVNIQAHKVIHPKSNSLLKPLAAKAATIEGTNPS-----------LAIVDEYHL 199 Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262 PD S L P + + D+ +D V Sbjct: 200 HPDNGVYSALELGMGARPEGLLFAITTSGSNVVSACKQHY----DYCCQILDGEEVNESM 255 Query: 263 SGFHEGIISRYGLDSDVARIE 283 + +D I+ Sbjct: 256 FVLIYELDDESEVDDPAMWIK 276 >gi|301622529|ref|XP_002940588.1| PREDICTED: Fanconi anemia group M protein-like, partial [Xenopus (Silurana) tropicalis] Length = 595 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 26/236 (11%), Positives = 65/236 (27%), Gaps = 15/236 (6%) Query: 39 GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98 GI+ P S W + + + + + + G+GKT + A +M Sbjct: 192 GIENLPGFDLSAGSVWIYPTNYLIRDYQFN--ISYTALLQNTLVCLPTGLGKTFIAAVVM 249 Query: 99 LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 P I+ +A ++ + ++ ++ + + ++ Sbjct: 250 YNFYRWYPSGKIVFMAPTKPLVAQ----QIEACFRVMGIPQDHMAEMTGSTQAQNRKDMW 305 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG-TPDIINKSILGFFTE 217 E+ + P + + DEA + ++ T Sbjct: 306 EKHRVFFLTPQVMVNDLTRGACPAS-------EIKCLVIDEAHKALGNHAYCQVVRELTN 358 Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRY 273 + S T + L + ++ + I HE + ++ Sbjct: 359 YTNQFRILALSATPGGDTKSVQQVVSNL-LISQIELRSEDSPDIQPYSHERQLEKF 413 >gi|153826515|ref|ZP_01979182.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-2] gi|149739695|gb|EDM53902.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-2] Length = 423 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 40/318 (12%), Positives = 77/318 (24%), Gaps = 50/318 (15%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 + FS+P + Q E + SA G GKT L Sbjct: 16 EAIEEMGFSRPTQVQAEAIPQALDG------------RDVLASAPTGTGKTAAFVIPALQ 63 Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 + P I+ + + AE ++ L+ + F + + Sbjct: 64 YLLDFPRRKAGPARILILTPTRELAMQV--AEQAQALAKNTRLNIFTITGGVQYQEHADI 121 Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 Q + + + DEA D+ + Sbjct: 122 LATTQDI--------VVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173 Query: 216 TELNPNRFWIMTSNTRRLN------------GWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + R + + + P + K+ + + Sbjct: 174 STECRWRKQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPH 233 Query: 264 --GFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AID 312 + I++ S V E L + IP +I E R Sbjct: 234 KVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFR 293 Query: 313 DLYAPLIMGCDIAGEGGD 330 + +++ D+A G D Sbjct: 294 EGDVNILLATDVAARGID 311 >gi|21283130|ref|NP_646218.1| terminase large subunit [Staphylococcus aureus subsp. aureus MW2] gi|66395511|ref|YP_239856.1| ORF003 [Staphylococcus phage 42E] gi|296276328|ref|ZP_06858835.1| terminase large subunit [Staphylococcus aureus subsp. aureus MR1] gi|297207827|ref|ZP_06924261.1| terminase large subunit [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911913|ref|ZP_07129356.1| terminase large subunit [Staphylococcus aureus subsp. aureus TCH70] gi|21204570|dbj|BAB95266.1| terminase large subunit [Staphylococcus aureus subsp. aureus MW2] gi|62636004|gb|AAX91115.1| ORF003 [Staphylococcus phage 42E] gi|296887543|gb|EFH26442.1| terminase large subunit [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886159|gb|EFK81361.1| terminase large subunit [Staphylococcus aureus subsp. aureus TCH70] Length = 563 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 49/348 (14%), Positives = 91/348 (26%), Gaps = 60/348 (17%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ + ++ H + I GR GKTT + + + +S G Sbjct: 81 QPWQHFIIGSLFGWVHK--ETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAE 138 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I +AN Q + L+ E + P +L E + + + Sbjct: 139 IHLLANVMKQAR-ILFDESKAMIKASP-------------------KLRENFRPLRDEIH 178 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTS 228 + + + DE D + I +T+ Sbjct: 179 YDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITT 238 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRT----------------------VEG----ID 262 +L+G ++ + R D RT ID Sbjct: 239 AGYQLDGPLVNMVEAGRDTLDRIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSID 298 Query: 263 SGFHEGIISRYGLDSDV---ARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPL 318 + + D + F + +FI + +++ + P Sbjct: 299 LDEMKEEWEKAKRTPDERGDFITKRFNIFANNDEMSFIDYPTLQKNNDIISLDELEGRPC 358 Query: 319 IMGCDIAGEGGDKTV----VVFRRGNIIEHIFDWSAKLIQETNQEGCP 362 +G D++ D T G + W K E + E P Sbjct: 359 TIGYDLSET-EDFTAACATFALDNGKVAVLTHSWIPKHKVEYSNEKIP 405 >gi|284162190|ref|YP_003400813.1| hypothetical protein Arcpr_1081 [Archaeoglobus profundus DSM 5631] gi|284012187|gb|ADB58140.1| protein of unknown function DUF699 ATPase putative [Archaeoglobus profundus DSM 5631] Length = 768 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 71/237 (29%), Gaps = 42/237 (17%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW---MMLWLIST--RPGMS 109 Q+ +E + + I+A RG GK+ + ++W + + + Sbjct: 221 QVRVLELFEHYFDRKKERKA-----VVITADRGRGKSAVLGIVTPYLIWRMFKVLKRPVR 275 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I+ +A + ++ + + + E + ++SK+ Sbjct: 276 IMVVAPTPYAVQTYFKFLLKAMVR--------------VGMKFRVKESGKLITVVNSKYA 321 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP-DIINKSILGFFTELNPNRFWIMTS 228 + + + V DEA+G ++ K G W++ S Sbjct: 322 RVEYVVPRRAMIEK------DYADIVIVDEAAGIDVPVLWKITEGVR--------WMIFS 367 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285 T F+I + + VE +E I G + ++L Sbjct: 368 TTIHGYEGAGRGFSI---RFLKRLESCEDVEIEKIHLNEPIRYGKGDPIEKWLYDVL 421 >gi|258539263|ref|YP_003173762.1| phage-related terminase large subunit [Lactobacillus rhamnosus Lc 705] gi|257150939|emb|CAR89911.1| Phage-related terminase large subunit [Lactobacillus rhamnosus Lc 705] Length = 567 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 40/305 (13%), Positives = 92/305 (30%), Gaps = 57/305 (18%) Query: 68 SNVNNSNPTIFKCAISAGRGIGKTTLNAWM-MLWLISTRPG---MSIICIANSETQLKNT 123 + N + IS R GK+ L A + L+L+ I+ ANS Q Sbjct: 87 RDKETGNRRYDRAYISMARKNGKSFLMADLGALYLLMENKPAMNREIVYTANSNAQA--- 143 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE-RPD 182 F+M S L ++ + + I+ Sbjct: 144 --------------HLAFDMLSSGLRQVSKMSKSVRDRLKINRNEIIDLPSNSRAVPLAS 189 Query: 183 TFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241 DE + D I +++ + + ++++ LNG Y + Sbjct: 190 DLHSLDGYQSDLAIIDEFALARTDEILRTLKSGQINSDNSLLAVISTTGPDLNGPMYKEY 249 Query: 242 ---------NIPLEDWK--RYQIDTRTVEGIDSGFHEG-------IISRYGLDSDVARIE 283 + + ++ D++ + + + ++ S A ++ Sbjct: 250 KFVSKVLTGREQADRYFIAVFEQDSKDEAFVPETWEKSNPLLANTERAKTMRPSLQADVD 309 Query: 284 ILGQ--------------FPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329 + + + +++I + E+A+ E D + + +G D++ Sbjct: 310 LAAKQGTLRPILVKNFNMWQSARADSYISLDDWEKAII-EPPDTMGKDVYIGLDLSKS-S 367 Query: 330 DKTVV 334 D T + Sbjct: 368 DLTSI 372 >gi|269202509|ref|YP_003281778.1| putative phage terminase, large subunit [Staphylococcus aureus subsp. aureus ED98] gi|262074799|gb|ACY10772.1| putative phage terminase, large subunit [Staphylococcus aureus subsp. aureus ED98] Length = 564 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 28/283 (9%), Positives = 75/283 (26%), Gaps = 55/283 (19%) Query: 82 ISAGRGIGKTTLNAWM----MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 IS R GK+ + + M +L+ + I +++ Q + + S+ ++++ Sbjct: 96 ISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQTI-FKMASQQVNLMRS 154 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + F + + + + + + Sbjct: 155 KSKFIREKTDVR---------KTDIEDILSSSVFAPLS------NNPDAVDGKDPTVAIL 199 Query: 198 DEASGTPDIINKSILGF-FTELNPNRFWIMTSNTRRLNGWFYDIF--------------- 241 DE + PD S T ++++ LN Y + Sbjct: 200 DELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEEVRADN 259 Query: 242 -----------NIPLEDWKRYQID----TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 ++ K + ++ + I ++ Sbjct: 260 YFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNIKSDIQDELEKGTSYHKILIK 319 Query: 287 QFP---QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAG 326 F Q ++ + E+A + + + +G D++ Sbjct: 320 NFNLWQAQREDSLLDIEDWEQATTNMPNIN-GKDVYIGVDLSR 361 >gi|118575834|ref|YP_875577.1| superfamily II helicase [Cenarchaeum symbiosum A] gi|118194355|gb|ABK77273.1| superfamily II helicase [Cenarchaeum symbiosum A] Length = 537 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 79/289 (27%), Gaps = 33/289 (11%) Query: 31 FVMRFFPW-------GIKGKPLEHFSQPH-RWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82 F PW G L +P +Q+ + + + + Sbjct: 112 FGFFGVPWIEHRPDEGPPDIELVKAERPLFEYQIGAVSRIKDILEHEGG-------RVLL 164 Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 G GKT + ++ L+ P +I +A S +L E +R Sbjct: 165 HVPTGGGKTRIAMRVVADLLLENPSSLVIWLAYS-EELCEQAIEEFKSAWRHTGNR---- 219 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP--HNTHGMAVFNDEA 200 +S++ + S + V DEA Sbjct: 220 --DVSIYRLFGGHDTDVLGRECRSGLIVAGLSKVYRRARTNSMLLTTLADRASLVIIDEA 277 Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 K +LG+ E + +++ R + + ++ + T Sbjct: 278 HQAIAETYKLVLGYLVEKHDVNLVGLSATPGRTWNSPLEDRKLA--EFFNEKKVTIETGT 335 Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF-----IPHNYIEE 304 F I Y ++ +I G ++ IP++ +++ Sbjct: 336 DPVSFL--IKDGYLAKPNIEQIRHDGMLTNSDMERIAKSLEIPNDILDK 382 >gi|121728399|ref|ZP_01681427.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V52] gi|147674594|ref|YP_001216154.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395] gi|153215838|ref|ZP_01950170.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 1587] gi|153802013|ref|ZP_01956599.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-3] gi|153829171|ref|ZP_01981838.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 623-39] gi|229512921|ref|ZP_04402388.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TMA 21] gi|229525313|ref|ZP_04414718.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae bv. albensis VL426] gi|229530466|ref|ZP_04419854.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 12129(1)] gi|254226532|ref|ZP_04920115.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V51] gi|254291900|ref|ZP_04962682.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae AM-19226] gi|262169959|ref|ZP_06037649.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC27] gi|262191213|ref|ZP_06049412.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae CT 5369-93] gi|297580786|ref|ZP_06942712.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC385] gi|121629333|gb|EAX61765.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V52] gi|124114555|gb|EAY33375.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 1587] gi|124122472|gb|EAY41215.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-3] gi|125620936|gb|EAZ49287.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V51] gi|146316477|gb|ABQ21016.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395] gi|148875360|gb|EDL73495.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 623-39] gi|150422186|gb|EDN14151.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae AM-19226] gi|227012485|gb|ACP08695.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395] gi|229332239|gb|EEN97727.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 12129(1)] gi|229338894|gb|EEO03911.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae bv. albensis VL426] gi|229350170|gb|EEO15123.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TMA 21] gi|259156570|gb|ACV96513.1| ATP-dependent RNA helicase SrmB [Vibrio fluvialis Ind1] gi|262021693|gb|EEY40404.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC27] gi|262032915|gb|EEY51454.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae CT 5369-93] gi|297535202|gb|EFH74037.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC385] gi|327483459|gb|AEA77866.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae LMA3894-4] Length = 423 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 40/318 (12%), Positives = 77/318 (24%), Gaps = 50/318 (15%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 + FS+P + Q E + SA G GKT L Sbjct: 16 EAIEEMGFSRPTQVQAEAIPQALDG------------RDVLASAPTGTGKTAAFVIPALQ 63 Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 + P I+ + + AE ++ L+ + F + + Sbjct: 64 YLLDFPRRKAGPARILILTPTRELAMQV--AEQAQALAKNTRLNIFTITGGVQYQEHADI 121 Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 Q + + + DEA D+ + Sbjct: 122 LATTQDI--------VVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173 Query: 216 TELNPNRFWIMTSNTRRLN------------GWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + R + + + P + K+ + + Sbjct: 174 STECRWRKQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPH 233 Query: 264 --GFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AID 312 + I++ S V E L + IP +I E R Sbjct: 234 KVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFR 293 Query: 313 DLYAPLIMGCDIAGEGGD 330 + +++ D+A G D Sbjct: 294 EGDVNILLATDVAARGID 311 >gi|15640680|ref|NP_230309.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587852|ref|ZP_01677609.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 2740-80] gi|153818685|ref|ZP_01971352.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae NCTC 8457] gi|153822294|ref|ZP_01974961.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33] gi|227080841|ref|YP_002809392.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae M66-2] gi|229505718|ref|ZP_04395228.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae BX 330286] gi|229508708|ref|ZP_04398201.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33] gi|229519543|ref|ZP_04408986.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC9] gi|229608737|ref|YP_002879385.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MJ-1236] gi|254850991|ref|ZP_05240341.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MO10] gi|255743880|ref|ZP_05417836.1| ATP-dependent RNA helicase SrmB [Vibrio cholera CIRS 101] gi|262156099|ref|ZP_06029218.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae INDRE 91/1] gi|298500776|ref|ZP_07010579.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MAK 757] gi|9655098|gb|AAF93826.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547888|gb|EAX57972.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 2740-80] gi|126510765|gb|EAZ73359.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae NCTC 8457] gi|126520190|gb|EAZ77413.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33] gi|227008729|gb|ACP04941.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae M66-2] gi|229344232|gb|EEO09207.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC9] gi|229354232|gb|EEO19162.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33] gi|229357941|gb|EEO22858.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae BX 330286] gi|229371392|gb|ACQ61815.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MJ-1236] gi|254846696|gb|EET25110.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MO10] gi|255738511|gb|EET93900.1| ATP-dependent RNA helicase SrmB [Vibrio cholera CIRS 101] gi|262030135|gb|EEY48780.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae INDRE 91/1] gi|297540557|gb|EFH76615.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MAK 757] Length = 423 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 40/318 (12%), Positives = 77/318 (24%), Gaps = 50/318 (15%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 + FS+P + Q E + SA G GKT L Sbjct: 16 EAIEEMGFSRPTQVQAEAIPQALDG------------RDVLASAPTGTGKTAAFVIPALQ 63 Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 + P I+ + + AE ++ L+ + F + + Sbjct: 64 YLLDFPRRKAGPARILILTPTRELAMQV--AEQAQALAKNTRLNIFTITGGVQYQEHADI 121 Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 Q + + + DEA D+ + Sbjct: 122 LATTQDI--------VVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173 Query: 216 TELNPNRFWIMTSNTRRLN------------GWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + R + + + P + K+ + + Sbjct: 174 STECRWRKQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPH 233 Query: 264 --GFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AID 312 + I++ S V E L + IP +I E R Sbjct: 234 KVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFR 293 Query: 313 DLYAPLIMGCDIAGEGGD 330 + +++ D+A G D Sbjct: 294 EGDVNILLATDVAARGID 311 >gi|225155673|ref|ZP_03724162.1| hypothetical protein ObacDRAFT_9284 [Opitutaceae bacterium TAV2] gi|224803646|gb|EEG21880.1| hypothetical protein ObacDRAFT_9284 [Opitutaceae bacterium TAV2] Length = 575 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 31/246 (12%), Positives = 58/246 (23%), Gaps = 23/246 (9%) Query: 31 FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90 FV+ +GK L P+ Q A K R +G Sbjct: 21 FVLFAVLKDKEGKILPKRK-PNILQKRMFAAYRKCMAEGKP------CKILGLKPRQVGL 73 Query: 91 TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150 +T+ A + + G+S +A+ + L FE + P Sbjct: 74 STIVAAITYHHMMNHGGLSGALMADKTGTSDKVF-----EIFRTLAEHDKFEWGYGPM-P 127 Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP----DI 206 L + + S +E + E + P Sbjct: 128 KFGEPGNLADEIVLPSGSMY------RKETAGSARAGAGGTIQVANATEVAHFPVIKGKD 181 Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFH 266 + + P ++ + G FY+++ + R F Sbjct: 182 PALGFFNSWYDEGPMSIGMLDTTPNGPTGIFYEMWQNKKNGYIRIFAAWFEFPEHARPFA 241 Query: 267 EGIISR 272 Sbjct: 242 SAAERE 247 >gi|157123114|ref|XP_001660014.1| hypothetical protein AaeL_AAEL009397 [Aedes aegypti] gi|108874507|gb|EAT38732.1| conserved hypothetical protein [Aedes aegypti] Length = 646 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 34/299 (11%), Positives = 74/299 (24%), Gaps = 37/299 (12%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS---------------AGRGIGKTTLNAW 96 Q E M+ + ++ S A+ G GK++ Sbjct: 139 DSAQRETMDEITSFQWIDIGISTNEEQMVAVRNIVNRTSFPAPYVLFGPPGTGKSSTLVE 198 Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156 ++ + P +++ +A S S+ L+++P +H F S S + + Sbjct: 199 VIGQIYKLHPEANMLVVAPSNFAANEIT----SRILNVVPEKHVFRYFSRSSIRTVNDID 254 Query: 157 LLEQSMGIDSKHYT------------ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + I T H V DE Sbjct: 255 ENILQISNMADKKYDLPYYQDIYLARIVVTTLVTAGRLVQANIRAKHFRYVIIDECGSAK 314 Query: 205 DIINKSILGFFTELNPNRF-WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 +I + +G I+ + + G + + + E I Sbjct: 315 EISSLVPIGGLATCGDEIHASIVLAGDPKQLGPVIQHNYLKQTNHNVSLL-----ERIMK 369 Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGC 322 + ++ ++ F + P+ R +G Sbjct: 370 LDLYEMNPTTKEYNNRYITQLRDNFRSHSMLLNFPNKTFYAGQLRAKASPELTNWALGW 428 >gi|12719430|ref|NP_075501.1| terminase large subunit [Staphylococcus phage phiSLT] gi|12697860|dbj|BAB21732.1| terminase large subunit [Staphylococcus phage phiSLT] Length = 563 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 48/348 (13%), Positives = 90/348 (25%), Gaps = 60/348 (17%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ + ++ H + I GR GKTT + + + +S G Sbjct: 81 QPWQHFIIGSLFGWVHK--ETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAE 138 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I +AN Q + L+ E + P +L E + + + Sbjct: 139 IHLLANVMKQAR-ILFDESKAMIKASP-------------------KLRENFRPLRDEIH 178 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTS 228 + + + DE D + I +T+ Sbjct: 179 YDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITT 238 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRT----------------------VEG----ID 262 +L+G D+ + + D RT ID Sbjct: 239 AGYQLDGPLVDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSID 298 Query: 263 SGFHEGIISRYGLDSDV---ARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPL 318 + + + F + +FI + +++ + P Sbjct: 299 LDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYPTLQKNNEIISLDELEGRPC 358 Query: 319 IMGCDIAGEGGDKTV----VVFRRGNIIEHIFDWSAKLIQETNQEGCP 362 +G D++ D T G + W K E + E P Sbjct: 359 TIGYDLSET-EDFTAACATFALDNGKVAVLTHSWIPKHKVEYSNEKIP 405 >gi|300871056|ref|YP_003785928.1| phage terminase large subunit [Brachyspira pilosicoli 95/1000] gi|300688756|gb|ADK31427.1| phage terminase, large subunit [Brachyspira pilosicoli 95/1000] Length = 453 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 20/180 (11%), Positives = 53/180 (29%), Gaps = 20/180 (11%) Query: 61 AVDVHCHSNVNNSNPTIFKCAIS-AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119 ++++ T + I+ GRG GK+ A +++ I+C + Sbjct: 2 NININILKPFEKWINTEKRLKIAFGGRGGGKSESIARILIAKSFEI-NGVILCAREIQKS 60 Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 + + + + + L +F ++ + ++ E Sbjct: 61 ISYSTYPLLISIIKELNLNEFFVVKRNEIINKITNSK--------------FIFLGIREC 106 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239 + + + F +EA + + + + W+ N R + Y Sbjct: 107 SIEEIKSIY--NVRICFIEEAQTLTQRSYEILEPSIR-ADKSEIWLAF-NPRFETDFIYR 162 >gi|290957801|ref|YP_003488983.1| nucleotide modification protein [Streptomyces scabiei 87.22] gi|260647327|emb|CBG70432.1| putative nucleotide modification protein [Streptomyces scabiei 87.22] Length = 535 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 26/233 (11%), Positives = 60/233 (25%), Gaps = 25/233 (10%) Query: 11 LEQE----LHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFS--QPHRW----QLEFME 60 EQE L + A+ F + P P Q + Sbjct: 84 DEQEPLDYLQSLKWTADERRELLEFFGFTID-RVPSLPPAFKQEAGPEYGLFPHQRQAAA 142 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 V + + + G+GKT ++ + ++ +A+ + L Sbjct: 143 RVKELLYDGS-------RRTVLHLPTGVGKTRTGMSLICDHLRQHEPTVVVWLAHGQELL 195 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 + E + + + R + L + + + S+ + Sbjct: 196 EQAAV-EFERAWTKVGDRP---VPVLRVWGNASADLADMTDGLVVLGLEKAVSAAKSDPQ 251 Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233 + + DEA + ++ T + +T+ R Sbjct: 252 FLATLAARS---TLTVFDEAHQIIAPTFQRVVDELTIRHDASLLGLTATPGRT 301 >gi|50289833|ref|XP_447348.1| hypothetical protein [Candida glabrata CBS 138] gi|49526658|emb|CAG60285.1| unnamed protein product [Candida glabrata] Length = 1512 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 2/117 (1%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTT+ A ++ L+ S++ + + + + N + + M ++ S Sbjct: 1067 GTGKTTVIAEIIHILVKNN--KSVLLTSYTHSAVDNIMLKLKNYNTKMCRLGSRSKIHSE 1124 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + Y+ + ++ T DT + V DEAS Sbjct: 1125 IIPYIPDYSTIKTLDDYVEFIDNIPVVATTCLGIRDTMLSMRTKDFDYVIIDEASQI 1181 >gi|123402170|ref|XP_001302001.1| Type III restriction enzyme, res subunit family protein [Trichomonas vaginalis G3] gi|121883246|gb|EAX89071.1| Type III restriction enzyme, res subunit family protein [Trichomonas vaginalis G3] Length = 790 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 21/160 (13%), Positives = 39/160 (24%), Gaps = 16/160 (10%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + + G GKT + A +++ P II A + A V + + Sbjct: 71 YNTLVCLPTGSGKTFIAAVVIMNFYRWYPNSIIIFCATTR--------ALVEQQIDAC-- 120 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT--HGMAV 195 ++ + ++ D + + + Sbjct: 121 ---NMFTTIPDSDTIALLGTTHSNIRKDLWKTYRVVYATPQTVQNDIKKGRLDPCRISLI 177 Query: 196 FNDEASGTPDII-NKSILGFFTELNPNRFWIMTSNTRRLN 234 DEA I E N I S T + Sbjct: 178 IFDEAHHARHRHAYSMITRMVAERNSQFRIIGLSATPGKD 217 >gi|26990586|ref|NP_746011.1| phage terminase, large subunit, putative [Pseudomonas putida KT2440] gi|24985568|gb|AAN69475.1|AE016582_13 phage terminase, large subunit, putative [Pseudomonas putida KT2440] Length = 602 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 35/311 (11%), Positives = 83/311 (26%), Gaps = 60/311 (19%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTRPGMS-- 109 WQ + ++ ++ F+ + +G+G GK+ L A + L + Sbjct: 88 PWQKFIVGSIF----GWKSSDGYRRFRVVYVESGKGSGKSPLAAGVGLTGLIADNEARAE 143 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I A + Q L+ + + P E+ + + Sbjct: 144 IYAAATKKDQAM-ILFRDAVAMVQQSP-----ELTKRLVCSGTGQNIWNLAYLK------ 191 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 + + D DE + ++ T+ M +N Sbjct: 192 --SGSFFRPISSDDGQS--GPRPHMALIDEVHEHKTNMVVEMMRAGTKSRKQALIFMITN 247 Query: 230 T-RRLNGWFYDIFNIP---------------------------LEDWKRYQIDTR----T 257 + G ++ ++ ++ + Sbjct: 248 SGSNKRGPCWEYHEYGSRVASGALTDDGFFAYICSLDEGDDPIQDESCWFKSNPSLQDAD 307 Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEIL--GQFPQQEVNNFIPHNYIEEAMSREA-IDDL 314 + G+ E + G+ S A + L ++ + +I + +A R Sbjct: 308 LPGMKY-LREQVTEARGMPSKEAMVRRLNFCEW-TGAESPWISWDVWSQAEERVPMSLLR 365 Query: 315 YAPLIMGCDIA 325 P + G D++ Sbjct: 366 NRPSVGGLDLS 376 >gi|291537488|emb|CBL10600.1| Predicted ATPase related to phosphate starvation-inducible protein PhoH [Roseburia intestinalis M50/1] Length = 455 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 26/195 (13%), Positives = 51/195 (26%), Gaps = 7/195 (3%) Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM---SIICIANSETQLK 121 + T I G KT + + + P II + Q Sbjct: 243 FMQEALMTDADTAPLVIIKGMAGTAKTFYALAVGMEKVYNNPSKEYRRIIVCRPN-AQFD 301 Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 + + + + +L E E + K + R + Sbjct: 302 DDIGFLPGDEKEKIAPLMRPVIDNLEQILDSDEKERYEDEAELSDKITEVFERGIIQTEA 361 Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241 F+ + + DEA + G T I+ + +++ F D Sbjct: 362 LNFIRGRSIAKTYLIIDEAQNMTPNQ---VKGIITRAGKGTKIILLGDPNQIDKPFLDER 418 Query: 242 NIPLEDWKRYQIDTR 256 L +Y +D+ Sbjct: 419 TNGLSYAAKYMMDSE 433 >gi|86356736|ref|YP_468628.1| putative terminase large subunit protein [Rhizobium etli CFN 42] gi|86280838|gb|ABC89901.1| putative terminase large subunit protein [Rhizobium etli CFN 42] Length = 523 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 30/267 (11%), Positives = 66/267 (24%), Gaps = 29/267 (10%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 + R +G TT ML + IA++ ++ ++ LP Sbjct: 55 VLLKARQLGLTTFIQIFMLDACVFNRDIRAGTIAHTLGDVQTIFRDKIKYPYDNLPEG-- 112 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + + + + + + + T H + + Sbjct: 113 -------IRNAVPVVRTNQSELLLANNSSIRVGTSLR---SGTLQYLHISEYGKL----C 158 Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL-----------EDWK 249 + PD + G + + + S G FY + D+K Sbjct: 159 AKYPDKAREVRTGALNTVQAGQLVFVESTAEGQEGHFYSLCEDAQVKQRQALALTELDFK 218 Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA-MSR 308 + IIS + E + + ++ ++ M R Sbjct: 219 FHFFPWWKEPQYSIAPEGVIISDAFVKYFRELAEQGIALTEGQKAWYVKKAEVQLGDMKR 278 Query: 309 EAIDDLYAPLIMGCDIAGEGGDKTVVV 335 E + A D+ + Sbjct: 279 EYPSTPAEAFEASVEGAYY-ADQMAIA 304 >gi|332283234|ref|YP_004418919.1| terminase [Pusillimonas sp. T7-7] gi|330430962|gb|AEC22295.1| terminase [Pusillimonas sp. T7-7] Length = 506 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 47/328 (14%), Positives = 86/328 (26%), Gaps = 64/328 (19%) Query: 44 PLEHFSQPHR---WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 EH QP + +Q +F++AV + H +I+ R GK+ L A ++L Sbjct: 23 EGEHVGQPIKLAPFQKKFIKAVYDNKHGTRRAY------LSIA--RKNGKSALVAGILLA 74 Query: 101 LISTRP---GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 + I+ A S Q ++ +K + + P S + L Sbjct: 75 HLVGPEAQLNSQIVSGAQSRDQAA-LVFNLAAKMVQLSPE------LSGIVRIVPSGKRL 127 Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFF 215 + + ++ + T H + DE P + Sbjct: 128 IGLPLNVEYRALAADGTTA-----------HGLSPILAILDETGQVRGPQNDFVDAITTA 176 Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIF---NIPLEDWKRYQIDTRTVEGID---------- 262 + ++ S + + +D + G D Sbjct: 177 QGAHKAPLLLVISTQAANDADLLSQWIDDAEKSKDPRIVSHVYAAKPGADVLDKTAWKAA 236 Query: 263 ----------SGFHEGIISRYGLDSDVARIEILGQFPQQEV-NNFIPHNYIEEAMSREAI 311 E + S L + FI N + R Sbjct: 237 NPALGIFRSLEDLEEQARQAARMPSAENTFRNLILNQRVSTVTPFISKNVWDANSGRVV- 295 Query: 312 DDLYAPLIM-GCDI-AGEGGDKTVVVFR 337 D + G D+ A D T +V Sbjct: 296 -DFGDTKVWAGLDLSART--DLTALVII 320 >gi|253315476|ref|ZP_04838689.1| terminase large subunit [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 563 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 49/348 (14%), Positives = 91/348 (26%), Gaps = 60/348 (17%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ + ++ H + I GR GKTT + + + +S G Sbjct: 81 QPWQHFIIGSLFGWVHK--ETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAE 138 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I +AN Q + L+ E + P +L E + + + Sbjct: 139 IHLLANVMKQAR-ILFDESKAMIKASP-------------------KLRENFRPLRDEIH 178 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTS 228 + + + DE D + I +T+ Sbjct: 179 YDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITT 238 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRT----------------------VEG----ID 262 +L+G ++ + R D RT ID Sbjct: 239 AGYQLDGPLVNMVEAGRDTLDRIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSID 298 Query: 263 SGFHEGIISRYGLDSDV---ARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPL 318 + + D + F + +FI + +++ + P Sbjct: 299 LDEMKEEWEKAKRTPDERGDFITKRFNIFANNDEMSFIDYPTLQKNNDIISLDELEGRPC 358 Query: 319 IMGCDIAGEGGDKTVVV----FRRGNIIEHIFDWSAKLIQETNQEGCP 362 +G D++ D T G + W K E + E P Sbjct: 359 TIGYDLSET-EDFTAACATFGLDNGKVAVLTHSWIPKHKVEYSNEKIP 405 >gi|254472100|ref|ZP_05085500.1| Type III restriction enzyme, res subunit family [Pseudovibrio sp. JE062] gi|211958383|gb|EEA93583.1| Type III restriction enzyme, res subunit family [Pseudovibrio sp. JE062] Length = 922 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 26/197 (13%), Positives = 54/197 (27%), Gaps = 27/197 (13%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q + +D H + + + A G GKT L +M R G I Sbjct: 13 REYQERVLAELDTHLDDDHLH---------VVAAPGSGKTVLGLEVM-----RRIGQPAI 58 Query: 112 CIANSETQLKNTLWA-----------EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 +A + ++N E W+S F ++ Sbjct: 59 ILAPTI-TIRNQWIDRLTSMFLPDGVEKPSWISKDIRNPRFLTVITYQALHAAFSNQDID 117 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGP-HNTHGMAVFNDEASGTPDIINKSILGFFTELN 219 D + + + + DEA + K+++ L+ Sbjct: 118 EELQDVEDEADDKPQIKCSKSVDINALLAAQNIQVLVLDEAHHLRNEWWKALIKLKGTLS 177 Query: 220 PNRFWIMTSNTRRLNGW 236 + +T++ + Sbjct: 178 KPKIVSLTASPPYDVDY 194 >gi|19114536|ref|NP_593624.1| ATP-dependent 3' to 5' DNA helicase (predicted) [Schizosaccharomyces pombe 972h-] gi|74698622|sp|Q9HE09|MFH2_SCHPO RecName: Full=Putative ATP-dependent RNA helicase mfh2; AltName: Full=FancM homolog protein 2 gi|12038920|emb|CAC19734.1| ATP-dependent 3' to 5' DNA helicase (predicted) [Schizosaccharomyces pombe] Length = 783 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 29/224 (12%), Positives = 63/224 (28%), Gaps = 35/224 (15%) Query: 9 QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68 Q + E+ + + + FP Q +Q EF E H Sbjct: 78 SSQPQVITELENNIDIPKNIDAMQNWIFP---------QTQQYRNYQKEFCEQALFH--- 125 Query: 69 NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128 ++ G+GKT + A +ML P II +A ++ + Sbjct: 126 ----------NLLLALPTGLGKTFIAAVVMLNYFRWFPESKIIFLAPTK--------PLL 167 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188 + + + + +G + + + +T +T + + Sbjct: 168 LQQRVACSNVAGMSPGATAE-LNGEVSPDRRLFEYNTKRVFFMTPQTLQNDLKE--HLLD 224 Query: 189 NTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNT 230 + + DEA + + + R +T+ Sbjct: 225 AKSIICLIFDEAHRATGNHSYAQVMRAVLRSNSHFRVLGLTATP 268 >gi|253682970|ref|ZP_04863757.1| hypothetical protein CLG_B2294 [Clostridium phage D-1873] gi|253560896|gb|EES90358.1| hypothetical protein CLG_B2294 [Clostridium phage D-1873] Length = 611 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 39/361 (10%), Positives = 90/361 (24%), Gaps = 59/361 (16%) Query: 9 QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68 + + + + ++ + F+ P + + + + +Q + Sbjct: 43 KFEDNKKNFIMWASFFRAYPDIFIDMV-------TPQDSYFKLYPYQRIMLR-------- 87 Query: 69 NVNNSNPTIFKCAISAG---RGIGKTTLNAWMMLWLISTRPGMSIICIAN-SETQLKNTL 124 +F+ G RG K+ + L G+ A+ S+ Q ++ Sbjct: 88 -------LLFRYQYCFGTLTRGSAKSFVEVLACLLKDIMYAGLKNSITASGSKQQGRDIA 140 Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC-RTYSEERPDT 183 ++ + LP + + + + +E M S + C R + Sbjct: 141 NEKIDEIERFLP------VIAKEIKNKSVGKDYVEVEMYNKSWLGVVGCHNNSRGGRKNQ 194 Query: 184 FVGPHNTHGMAVFNDEA------------SGTPDII-NKSILGFFTELNPNRFWIMTSNT 230 +EA G D L + T I Sbjct: 195 GCIEEAFDVDVQTLNEAILPMFNVKRRTPRGIEDENEFDEQLWYVTTAGFYDTAICRKQV 254 Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTR---TVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287 L+ + + + + I + E Sbjct: 255 DMLHQMSKQSSYSGKNTYCVFGSSYELPLYHGLLKQSKVDAITNDSSYSQLSFDREYRSI 314 Query: 288 FPQQEVNNFIPHNYIEEAM-------SREAIDDLYAPLIMGCDIAGEGG---DKTVVVFR 337 + + F + I + + I+ D+A +GG D ++ Sbjct: 315 WIKFSDKAFFKLDDINNCRVIKHCELEADFKNHKDDFYIISYDVARQGGTANDASIATIF 374 Query: 338 R 338 R Sbjct: 375 R 375 >gi|229520951|ref|ZP_04410373.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TM 11079-80] gi|229342184|gb|EEO07180.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TM 11079-80] Length = 423 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 40/318 (12%), Positives = 77/318 (24%), Gaps = 50/318 (15%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 + FS+P + Q E + SA G GKT L Sbjct: 16 EAIEEMGFSRPTQVQAEAIPQALDG------------RDVLASAPTGTGKTAAFVIPALQ 63 Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 + P I+ + + AE ++ L+ + F + + Sbjct: 64 YLLDFPRRKAGPARILILTPTRELAMQV--AEQAQALAKNTRLNIFTITGGVQYQEHADI 121 Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 Q + + + DEA D+ + Sbjct: 122 LATTQDI--------VVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173 Query: 216 TELNPNRFWIMTSNTRRLN------------GWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + R + + + P + K+ + + Sbjct: 174 STECRWRKQTLLFSATLEGRGVEGFTADLLKDPAHVDAESPRRERKKISQWYHRADDMPH 233 Query: 264 --GFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AID 312 + I++ S V E L + IP +I E R Sbjct: 234 KVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFR 293 Query: 313 DLYAPLIMGCDIAGEGGD 330 + +++ D+A G D Sbjct: 294 EGDVNILLATDVAARGID 311 >gi|206603325|gb|EDZ39805.1| Putative helicase [Leptospirillum sp. Group II '5-way CG'] Length = 1055 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 76/234 (32%), Gaps = 42/234 (17%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEA 61 + + + ++ ++L + F + P + +P+ +Q E ++ Sbjct: 284 STFVPYSSEKKADVQKILSRSRSRDDFSD-----------TIPFD--IRPYPFQEEVLDR 330 Query: 62 VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121 ++ F+ + + G GKT + A+ +P + + +A+ + L+ Sbjct: 331 LEA------EREVHGSFRNLVVSATGTGKTVIAAFDFRRFREQKPDATFLFVAHRQEILE 384 Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 +L ++ +L R++ E+ + S + +H + ++ Sbjct: 385 QSL----KQFRHILEDRNFGEL-------------WVAGSRPVHGQHVFASIQSLDRAAV 427 Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 V DE + + L P +T+ R +G Sbjct: 428 GRISP---EQFDYVVIDE---IHHGMAPTYRRLLETLKPRILLGLTATPERSDG 475 >gi|172034833|ref|YP_001798610.1| hypothetical protein cce_5230 [Cyanothece sp. ATCC 51142] gi|171701597|gb|ACB54576.1| conserved hypothetical protein [Cyanothece sp. ATCC 51142] Length = 496 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 30/272 (11%), Positives = 64/272 (23%), Gaps = 43/272 (15%) Query: 48 FSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107 + R Q + + ++ F+ + AG GK+ L A ++ WL + Sbjct: 60 ATGLTRQQQTAYKEMINFIENSSEQY----FRLSGYAG--TGKSFLMAKVIEWL--KQED 111 Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 A + KN G E + + + Sbjct: 112 YKYSVAAPTNKAAKNLT---------------------QIARSQGIKIEATTVAKLLKLQ 150 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227 ++ + DE S + + ++ Sbjct: 151 PTIDVDTGQQSFEFNSEKELELKDYDVIIIDEYSMLNKDNFRDLQQAVKGGESKFIFVGD 210 Query: 228 SN---TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 S+ + + QI E + E I + Sbjct: 211 SSQLPPVKEKEPIVANHPDIRKSANLTQIVRYDGEIV--KVAESIRRNPRWNHQTYP--- 265 Query: 285 LGQFPQQEVNNFIPH---NYIEEAMSREAIDD 313 F I +++++A+S +D Sbjct: 266 ---FETVADGTIIKLNTEDWLQQALSHFEKED 294 >gi|325674311|ref|ZP_08154000.1| putative phage associated protein [Rhodococcus equi ATCC 33707] gi|325554991|gb|EGD24664.1| putative phage associated protein [Rhodococcus equi ATCC 33707] Length = 489 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 40/322 (12%), Positives = 78/322 (24%), Gaps = 40/322 (12%) Query: 39 GIKGKPLEHFSQ--PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96 G K L P WQ E + A+ + + R GK+ + Sbjct: 9 GEKAVELARRIGAKPMPWQREALHALMTRNDDGRWTHSDA----CLICPRQNGKSLILTL 64 Query: 97 MMLWLISTRPGMSIICIANSETQLKNT---LWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153 +L+ + G +II A T + WA + S+L Sbjct: 65 RILYGLFKL-GETIIFTAQRWTTAEEIYQRTWALIEPRKSLLARVKKTTCSQGRGVIEMK 123 Query: 154 YAELLEQSMGIDSKHYTITC-----------RTYSEERPDTFVGPHNTHGMAVFNDEASG 202 + + +T T E ++ A Sbjct: 124 NGNKVVFTTRSADAGRGLTKLDLVIYDEAYNLTDGEMSALGPAQLAADDPQTIYTSSAVN 183 Query: 203 TPDIINKSILGFFTELN----PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 + N +L E ++ ++ + + Q Sbjct: 184 QDEHSNGLVLAALRERGLAGERELYFAEYMAPEEMDRADEATWQYANPSYGVIQ-----T 238 Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILGQFP--QQEVNNFIPHNYIEEAMS---REAIDD 313 G ++ G S I G +P + + ++ A + Sbjct: 239 PSKIRKLMRGFATQAGRKSFDVEILGRGDWPIEELLEDT---KPVVDMAGWSKLHDTAPA 295 Query: 314 LYAPLIMGCDIA--GEGGDKTV 333 + D++ E D+T Sbjct: 296 FTGSTCLAVDMSTERERSDRTC 317 >gi|167753387|ref|ZP_02425514.1| hypothetical protein ALIPUT_01661 [Alistipes putredinis DSM 17216] gi|167658012|gb|EDS02142.1| hypothetical protein ALIPUT_01661 [Alistipes putredinis DSM 17216] Length = 472 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 28/270 (10%), Positives = 66/270 (24%), Gaps = 27/270 (10%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G K+ ++++ PG +L+ + K + + Sbjct: 61 GGAKSWTGCTWLVFMSLCYPGTKWFIGREELKRLRESTLITFFKVCTQYGIK-------- 112 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + + + + + + + +E Sbjct: 113 --RDKDFKYNGQDHYIQFANNSRIDLLDLRYLPSDPLYERYGSVEYTGGWIEEGGEVNFG 170 Query: 207 INKSILGFFTEL-----NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR------YQIDT 255 ++ R ++ N ++ W + F P + Sbjct: 171 AYDTLKTRIGRHLNDKYGILRKLFISCNPKK--NWMHSTFYKPAKAGTLPGHQIYLAALV 228 Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQF-PQQEVNNFIPHNYIEEAMSREAIDDL 314 + I+ + E + S D + G + N ++ I E + Sbjct: 229 QDNPFIEKDYIEALKSTT--DKVKKERLLKGNWDYDDNPNALCSYDNIREIFYPKIHTRT 286 Query: 315 YAPLIMGCDIAGEGGDKTVVVFRRGNIIEH 344 I DIA G D+ ++ G I Sbjct: 287 GIKYITA-DIARFGSDRARILVWDGWAIIE 315 >gi|154504557|ref|ZP_02041295.1| hypothetical protein RUMGNA_02062 [Ruminococcus gnavus ATCC 29149] gi|260590084|ref|ZP_05855997.1| putative phage terminase, large subunit [Blautia hansenii DSM 20583] gi|153795039|gb|EDN77459.1| hypothetical protein RUMGNA_02062 [Ruminococcus gnavus ATCC 29149] gi|260539596|gb|EEX20165.1| putative phage terminase, large subunit [Blautia hansenii DSM 20583] Length = 551 Score = 47.2 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 27/194 (13%), Positives = 47/194 (24%), Gaps = 30/194 (15%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP--GMS 109 WQ + + + IF I GR GK+ + ++ ++ P G Sbjct: 73 ELWQKAIVSVIFGIQDAEKIRIFREIF---IVIGRKNGKSLFASAIIAYMAYLEPEYGQE 129 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I C+A Q + M+ + + AE K Sbjct: 130 IYCLAPKLDQAALVY----DGFYQMVQAEDELAELAKKRRSDIYIAESNTV-----IKPI 180 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI----INKSILGFFTELNPNRFWI 225 + P V DE + + + + Sbjct: 181 AFNAKKSDGFNPQ-----------LVVCDEMAAWSGDAGLKQYEVMKSAL-GARTQPMIL 228 Query: 226 MTSNTRRLNGWFYD 239 S +N YD Sbjct: 229 SISTAGYINDSIYD 242 >gi|126662825|ref|ZP_01733824.1| hypothetical protein FBBAL38_05700 [Flavobacteria bacterium BAL38] gi|126626204|gb|EAZ96893.1| hypothetical protein FBBAL38_05700 [Flavobacteria bacterium BAL38] Length = 869 Score = 47.2 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 25/184 (13%), Positives = 54/184 (29%), Gaps = 27/184 (14%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q +F+ + H H N + + A G GKT L +M R + Sbjct: 13 RTYQEKFLSQFESHIHDNHLH---------VIAPPGSGKTILGLEIM-----RRMNKKTL 58 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 ++ + ++N +W L + S + + + + + Sbjct: 59 ILSPTL-TIRN-------QWNERLQSF----FSNNSNFENYSFDINEPKDVIFSTYQSLH 106 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 + + + D F + DEA + K + E +T+ Sbjct: 107 SFFKKCKSKEDYFEYFEKNKIEVLILDEAHHLKNEWWKCLYE-LKEHQKQTVVALTATPP 165 Query: 232 RLNG 235 + Sbjct: 166 YDSD 169 >gi|73748049|ref|YP_307288.1| helicase [Dehalococcoides sp. CBDB1] gi|73659765|emb|CAI82372.1| putative helicase (Snf2 family) [Dehalococcoides sp. CBDB1] Length = 1033 Score = 47.2 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 70/233 (30%), Gaps = 14/233 (6%) Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG-MSIICIANSETQLKNTLWAEVSKWLS 133 + I+ G G+GKT + A ++L + R S++ I ++ E+ ++ Sbjct: 121 SDRPRLLIADGVGVGKT-IEAGLILQELQARRDIQSVLIICPRPLVMERKWQIEMRRFGE 179 Query: 134 MLPHR-------HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 H EM + P + ++ S+ + + + R Sbjct: 180 HFTHLEGSTLRYCINEMDLEGIWPEQYKKSIISYSLFDEMLLFGPNGGNNRKRRKSLLTL 239 Query: 187 PHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRR-LNGWFYDIFNI 243 V DEA + + +F + N +T+ + + + + N+ Sbjct: 240 DPPPRFDLVIVDEAHHIRNTETYAHKAVRYFCD-NAEAVLFLTATPIQLGSNDLFVLLNV 298 Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 D + + F ++ + E L + + Sbjct: 299 LRPD-LIIDQKSFEHMAEPNPFINRAVAVTRSQQNEWEHEALVAIEEAASTAW 350 >gi|254491400|ref|ZP_05104579.1| DbpA RNA binding domain family [Methylophaga thiooxidans DMS010] gi|224462878|gb|EEF79148.1| DbpA RNA binding domain family [Methylophaga thiooxydans DMS010] Length = 460 Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 38/313 (12%), Positives = 78/313 (24%), Gaps = 41/313 (13%) Query: 53 RWQLEFMEAV-DVHCHSNVNNSNPTIFK---CAISAGRGIGKTTLNAWMMLWLIS-TRPG 107 + QL+ ++++ + S P I K A G GKT +L ++ G Sbjct: 13 KAQLDALDSLGYESMTAIQAQSLPEILKGNDLIAQAKTGSGKTAAFGIGLLQKLNPRFFG 72 Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE-MQSLSLHPSGWYAELLEQSMGIDS 166 + + + + E+ K +P+ + P E Sbjct: 73 AQALVLCPTRELAEQV-GKEIRKLARFMPNIKLVMLCGGKPIGPQIGSLEH--------- 122 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226 + + + + DEA D+ + P + Sbjct: 123 GAHIVVGTPGRVQDHLRKNTLKLDGLTTLVLDEADRMLDMGFADAMQAIIGQTPKNRQTL 182 Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL- 285 + + + I E I F+E Sbjct: 183 LFSATYPDTIQHMSRQIQRNPVTVTVEAEHNKEVIQQVFYEVSKHDRNTALLSLFAHYQP 242 Query: 286 ----------------GQFP--QQEVNNFIPHNYIEEAMSREAIDDLYA----PLIMGCD 323 F +Q I + + R+ + +A P+++ D Sbjct: 243 ETCVVFCHTKKQCDDVADFLNNEQIDALAIHGDLDQR--DRDQVLVRFANNSCPVLVATD 300 Query: 324 IAGEGGDKTVVVF 336 +A G D + Sbjct: 301 VAARGLDIKALQM 313 >gi|90962732|ref|YP_536647.1| Type III restriction-modification system restriction subunit [Lactobacillus salivarius UCC118] gi|90821926|gb|ABE00564.1| Type III restriction-modification system restriction subunit [Lactobacillus salivarius UCC118] gi|300215361|gb|ADJ79774.1| Type III restriction-modification system restriction subunit [Lactobacillus salivarius CECT 5713] Length = 875 Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 27/196 (13%), Positives = 59/196 (30%), Gaps = 18/196 (9%) Query: 13 QELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQ-PHRWQLEFMEAVDVHCHSNVN 71 +++ + + + + ++ +Q E + A+ + + Sbjct: 16 KKIEDFRQASLIEDDPAYYFKI------EDYIKDNLKHNLRPYQAEALYAL-NYTQTREE 68 Query: 72 NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV--- 128 N +F A G GKT A +L+L +T + I +AN+ + T + Sbjct: 69 PHNQVLFNMA----TGSGKTDTMAGAILYLYNTHKYRNFIFVANTNAVVSKTKENFLNEN 124 Query: 129 --SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 ++ S+ Y E + + + E T+ Sbjct: 125 SPKYLFKSPITIDGRRIEIRSVDRFPSYQEPDIIYLKLTTIQSLANELGSIRENGLTYEE 184 Query: 187 PHNTHGMAVFNDEASG 202 + M + DEA Sbjct: 185 LE-KNKMVILADEAHH 199 >gi|256826731|ref|YP_003150690.1| phage terminase, large subunit, PBSX family [Cryptobacterium curtum DSM 15641] gi|256582874|gb|ACU94008.1| phage terminase, large subunit, PBSX family [Cryptobacterium curtum DSM 15641] Length = 426 Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 34/256 (13%), Positives = 74/256 (28%), Gaps = 23/256 (8%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 + GRG K++ + +++ L++T P ++ + L++T++ + + L Sbjct: 29 WLEGGRGSTKSSFISLVIVLLVATFPWVNAVVFRRQANTLRDTVYGQFLWAIGALGLDGC 88 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 F L G+D + DE Sbjct: 89 FYTSKSPLEIVYLRTGQKIIFRGLDDPKKRKGAVFPVGYCAVQW---------FEELDEF 139 Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT--- 257 +G DI S L + + + N R + + + ++ + +D T Sbjct: 140 NGWDDI--SSTLRTYRRGGSRFWTFYSYNPPRSLWSWVNKKALEMQRKRGCVVDHSTYLD 197 Query: 258 ------VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311 + + F E R E LG+ + + + + Sbjct: 198 VIDGGHSDWLGEKFIEDADYEKEEHPTGYRWEFLGE-ITGTGGSVF--ENVVQVSLSDKE 254 Query: 312 DDLYAPLIMGCDIAGE 327 + + L G D Sbjct: 255 VESFDNLRCGVDWGWF 270 >gi|281358561|ref|ZP_06245040.1| conserved hypothetical protein [Victivallis vadensis ATCC BAA-548] gi|281314909|gb|EFA98943.1| conserved hypothetical protein [Victivallis vadensis ATCC BAA-548] Length = 488 Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 90/302 (29%), Gaps = 50/302 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPG-------MSIICIANSETQLKNTLWAEVSKWL--SMLPH 137 G GK+ + +L+ + + + I N+ +LK T S+W+ P Sbjct: 32 GSGKSVACIFELLFRMREQAPNREGVRRSRWVIIRNTYPELKETTIKTFSEWVPSECCPI 91 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 R + P D Y + +RPD + + Sbjct: 92 RSEAPYSGTAWGPMD------------DGTTYEAEFLFLALDRPDDVKKLLSLECTGAWI 139 Query: 198 DEASGTPDIINKSILGFFTE----LNPNRFW---IMTSNTRRLNGWFYDIFNIPLEDWKR 250 +EA P I ILG + W IM +N + W+Y + + + Sbjct: 140 NEAREVPLTIVNGILGRTGRFPPKADAPTTWAGLIMDTNPPDTDHWYYKMAELDKPEGYS 199 Query: 251 YQIDT---------RTVEGIDSGFHEG---------IISRYGLDSDVARIEILGQFPQQE 292 + ++ E ++ G+D + R+ ++ Q+ Sbjct: 200 FYRQPGGILEVAEGVYAPNPEAENIENLPLGYDYYLRQAKPGVDPNYIRVMLMAQYGTLS 259 Query: 293 VNNFIPHNYIEEAMS--REAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350 + + + E R PL++G D V + G + + + + Sbjct: 260 ADRPVYTTFKENIHVAARPLEIHRNLPLLLGFDFGLTP--ACVFCQQLGGQLRVLRERFS 317 Query: 351 KL 352 Sbjct: 318 DD 319 >gi|212545250|ref|XP_002152779.1| DEAD/DEAH box helicase, putative [Penicillium marneffei ATCC 18224] gi|210065748|gb|EEA19842.1| DEAD/DEAH box helicase, putative [Penicillium marneffei ATCC 18224] Length = 1850 Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 61/216 (28%), Gaps = 20/216 (9%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P RWQ + ++ + I A GKT ++ + M ++ + Sbjct: 784 PDRWQRDVLDQI------------DQKKSTFIVAPTSAGKTFISFYAMKQILKEDDDGVL 831 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + +A ++ + ++++ P + ++H + + + Sbjct: 832 VYVAPTKALVNQIAAEVMARFSKSYP-ENATAKSVWAIHTRDHRINNPLTCQILITVPHI 890 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM---T 227 + + +T+ + DE + + L P + Sbjct: 891 LQIMLLAPSNANTWTPRLKR----IIFDEIHCIGQAEDGIVWEQLLLLAPCPIIALSATV 946 Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 N N W + D K Q + R + Sbjct: 947 GNPNEFNSWLQRAQDTNGHDLKMIQYNHRYSDLRKY 982 >gi|154492413|ref|ZP_02032039.1| hypothetical protein PARMER_02047 [Parabacteroides merdae ATCC 43184] gi|154087638|gb|EDN86683.1| hypothetical protein PARMER_02047 [Parabacteroides merdae ATCC 43184] Length = 422 Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 30/287 (10%), Positives = 68/287 (23%), Gaps = 43/287 (14%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPG-----MSIICIANSETQLKNTLWAEVSK 130 F I+ GRG GK+ + + L I+ + ++ E+ + Sbjct: 16 EKFIILITGGRGSGKSFNASTFIERLTFEMTPVEKIVHQILYTRYTMVSAGMSIIPEMME 75 Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190 + + + + S+ +T S + Sbjct: 76 KIEL-----------DGTTKYFKTTKTDIVNNMTKSRIMFRGIKTSSGNQTAKLKSIQG- 123 Query: 191 HGMAVFND-EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE--- 246 D T + I+ + I+ N N + Y + Sbjct: 124 -ITTFVCDEAEEWTSEEEFDKIMLSIRKKGIQNRIIIIMNPCDSNHFIYKKYIEKTHKLA 182 Query: 247 DWKRYQIDTRTVEGI--------------DSGFHEGIISRYGLDSDVARIEILGQFPQQE 292 + Q+ T + F + + + + ++G++ Sbjct: 183 EIDGVQVQISTHPNVLHIHTTYFDNLENLSPEFLKEVEDMKANNPEKYAHVVIGRWADVA 242 Query: 293 VNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRG 339 I + + +G D D + R G Sbjct: 243 AGAVFKKWGI-----VDEFPAWAKKVAIGQDFGYT-HDPSA-SIRCG 282 >gi|83589362|ref|YP_429371.1| CRISPR-associated helicase Cas3 family protein protein [Moorella thermoacetica ATCC 39073] gi|83572276|gb|ABC18828.1| CRISPR-associated helicase, Cas3 family [Moorella thermoacetica ATCC 39073] Length = 724 Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 27/246 (10%), Positives = 54/246 (21%), Gaps = 22/246 (8%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 + + HC P F + G GKT L II Sbjct: 219 QIRREIYEHCCR-AAELTPGFFSLTV--PTGGGKTRSGMAFALLHALRYQKERIIVAIPY 275 Query: 117 ETQL-------KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 + + ++ A + I + Sbjct: 276 TSIIEQTADVYRDIFGNANVLEHHSAVAPPLDPENPTPEELWARLASENWDATLIVTTTV 335 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWI 225 + +S+ R + HN + DE P + I + Sbjct: 336 QLFESLFSD-RSSSCRKLHNIANSVIILDEVQTLPVHLLEPILDVLQQLVHFYGVTVILC 394 Query: 226 MTSNTRRLNGWFY-------DIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278 + F+ +I P + + + V + + ++ S Sbjct: 395 SATQPALETSPFFRGLQGVREIIPDPQKYFALLKRVGYQVPAGNEKWSWEQVAGVIRQSR 454 Query: 279 VARIEI 284 A + Sbjct: 455 QAMAVV 460 >gi|212223477|ref|YP_002306713.1| reverse gyrase [Thermococcus onnurineus NA1] gi|212008434|gb|ACJ15816.1| reverse gyrase (rgy) [Thermococcus onnurineus NA1] Length = 1221 Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 30/250 (12%), Positives = 63/250 (25%), Gaps = 27/250 (10%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 E+ + W +I A G+GK+T A+M LW + Sbjct: 77 FENATGFTFW----------SAQRTWVKRLLKGRSFSIIAPTGMGKSTFGAFMALWHAT- 125 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 G + + + T+ K + + + ++ H + E E I Sbjct: 126 -KGKKSYIVVPTTPLVIQTV-----KKIQAIAEKSGVQINLAYYHGNLRKKEKEEMLAKI 179 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224 ++ Y I + + +F D N +R Sbjct: 180 ENDDYQILVTSAQWLARNFDEKLKGRRFDFIFVD----------DVDAFLKASKNIDRSL 229 Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 ++ T + ++I + K + + I + Sbjct: 230 LLLGFTEEVINKAWEIIRLKKSMAKYINGRAEDRDERLKELNREIEKLQREIEEFKEKNG 289 Query: 285 LGQFPQQEVN 294 +G Sbjct: 290 VGIMIIASAT 299 >gi|116253678|ref|YP_769516.1| phage terminase large subunit [Rhizobium leguminosarum bv. viciae 3841] gi|115258326|emb|CAK09428.1| putative phage terminase large subunit [Rhizobium leguminosarum bv. viciae 3841] Length = 523 Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 30/267 (11%), Positives = 63/267 (23%), Gaps = 29/267 (10%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 + R +G TT ML + IA++ + +V LP Sbjct: 55 VLLKARQLGLTTFIQIFMLDACVFNRDIRAGTIAHTLGDAQTIFRDKVKYPYDNLPEG-- 112 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + + + + + + + T H + + Sbjct: 113 -------IREAVPIVRDNQTELLLGNNSSIRVGTSLR---SGTLQYLHISEYGKL----C 158 Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL-----------EDWK 249 + PD + G + + + S G FY + D+K Sbjct: 159 AKYPDKAREVRTGALNTVQAGQLVFVESTAEGQEGHFYTLCEDAQVKQRQSSKLTELDFK 218 Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA-MSR 308 + II+ + + + ++ + M R Sbjct: 219 FHFFPWWKEPQYSIAPEGVIITEAFAKYFRTLADQGIELTDGQKAWYVKKAETQLGDMKR 278 Query: 309 EAIDDLYAPLIMGCDIAGEGGDKTVVV 335 E + A D+ V Sbjct: 279 EYPSSPAEAFEASVEGAYY-SDQMAVA 304 >gi|292670208|ref|ZP_06603634.1| CRISPR-associated helicase cas3 [Selenomonas noxia ATCC 43541] gi|292648160|gb|EFF66132.1| CRISPR-associated helicase cas3 [Selenomonas noxia ATCC 43541] Length = 803 Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 29/225 (12%), Positives = 56/225 (24%), Gaps = 26/225 (11%) Query: 3 RLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME-- 60 RL S + +LE+ L + AE F + ++ K P + Sbjct: 204 RLDSAEFELEKPLTDEWDTAEIWADFSD--------KLEQKLTGFSIPPEPKAEKIARLR 255 Query: 61 -AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET- 118 + C + + S P IF+ + G GKT + L I+ + + Sbjct: 256 QKISDDCLESGDES-PGIFRLCV--PTGGGKTLASMRFALRHAQKYNKKRIVVVIPYTSI 312 Query: 119 ------QLKNTLW--AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 ++++ + + S + E + Sbjct: 313 IDQNVKEIRDIFHMDEAILEHHSNVITEDDGEDTESMDFRRILTERWDVPVIFT---TQV 369 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 T + H + DE P Sbjct: 370 QFLNTVFAGGNSSLRRLHALEDSIIIFDEIQTLPIRCTYLFNAAM 414 >gi|229585247|ref|YP_002843749.1| hypothetical protein M1627_1829 [Sulfolobus islandicus M.16.27] gi|228020297|gb|ACP55704.1| protein of unknown function DUF699 ATPase putative [Sulfolobus islandicus M.16.27] Length = 742 Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 19/137 (13%), Positives = 38/137 (27%), Gaps = 21/137 (15%) Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 P ++A RG GK+ + +L++ +I+ + + + + V K L Sbjct: 229 PGKRVLVVTAARGRGKSASIGLFLSYLMTEEKFGNILVTSPTYYSSQEI-FNFVIKGLDA 287 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 L ++ S + + N G Sbjct: 288 LNVKYKLTTSKD--------------------GKIMKIATGESRVKWVSPDLARNEEGDL 327 Query: 195 VFNDEASGTPDIINKSI 211 + DEA+ I Sbjct: 328 IVVDEAAAIGMEFLDYI 344 >gi|167565026|ref|ZP_02357942.1| phage-related DNA maturase [Burkholderia oklahomensis EO147] Length = 601 Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 38/342 (11%), Positives = 78/342 (22%), Gaps = 78/342 (22%) Query: 68 SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-SIICIANSETQLKNTLWA 126 + + + I A RGIGK+ L A LW + + I+ ++ S T+ K + Sbjct: 57 RRMGEPDKKFREDIIEAFRGIGKSYLTAGFALWRLYRKAFSEKILVVSASGTKAKE--FV 114 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS------------KHYTITCR 174 ++K L M + W ++ S+ Sbjct: 115 SMAKTLLMTMDVFEHMRPRDDQRDTAWSFDVNGASISQSPSVKAVGITGQITGSRATLII 174 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGT------------PDIINKSILGFFTELNPNR 222 E D + +E + +SI + Sbjct: 175 ADDIEVTDNSRTEEARERLLHKTNEFAAIKVTGGADVIFLGTPQTEESIYTKLIKEMGAT 234 Query: 223 FWIM---TSNTRRLNGWFYDI-------FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISR 272 WI+ + + + P D + F+E + Sbjct: 235 GWILPARYPMPDKRQSYVFKREGGSEIDCLSPRARAVDLDADLQWKPTDPERFNEMELQN 294 Query: 273 YGLDSDVARI----------------------EILGQFPQQEVNNF-------------- 296 ++ P + Sbjct: 295 RESKGRSYFALQFQLDTSLSDAERYPLKQHDLIVMACNPFKAPQIVQWGHDSNGRNKRID 354 Query: 297 -----IPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTV 333 + + ++ Y ++ D +G G D+T Sbjct: 355 LMNYGFTGDSWLAPLFVDSEWREYEQSLLFVDPSGRGKDETA 396 >gi|27365517|ref|NP_761045.1| Helicase-like protein [Vibrio vulnificus CMCP6] gi|27361665|gb|AAO10572.1| Helicase-related protein [Vibrio vulnificus CMCP6] Length = 968 Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 52/184 (28%), Gaps = 34/184 (18%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P+ QL+ ++ + + + G G+GKT L+A + + Sbjct: 218 PNSAQLDALQRLSETRQKGNV-------RGLVVMGTGMGKTWLSA----FDAKQLEAKRV 266 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + +A+ E L L W +G+Y ++ Sbjct: 267 LFVAHREEILTQALMTFAKLW---------------PQKSAGYYHGKSKERNK-----EM 306 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 + + + + H + DE +I + P +T+ Sbjct: 307 LFASVQTLGKAAHLKHFASDHFDYIVVDEFHHASTKTYLNI---LSYFEPKFLLGLTATP 363 Query: 231 RRLN 234 R + Sbjct: 364 ERTD 367 >gi|88858953|ref|ZP_01133594.1| Mu-like prophage FluMu protein gp28 [Pseudoalteromonas tunicata D2] gi|88819179|gb|EAR28993.1| Mu-like prophage FluMu protein gp28 [Pseudoalteromonas tunicata D2] Length = 593 Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 41/321 (12%), Positives = 83/321 (25%), Gaps = 71/321 (22%) Query: 57 EFMEAVDVHC----HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 E ++ + + + + I R IG T A+ + I Sbjct: 139 EMLKELKDKLLYPHQKHWFENQNHRARF-ILKPRQIGATFYFAFEAFYDAVVNGRNKIFI 197 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 A S Q + + +++ E+ + + + ++ + Sbjct: 198 SA-SRDQAEVF----KANIVALCREHFNIELTGSPMVLNLAGGKTVKLIFKSTN------ 246 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232 RT E D ++ DE P+ L + + S Sbjct: 247 ARTAQSESGD------------LYIDEVFWIPNYKTLRGLAQAMATHKHLRITYFSTPSV 294 Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-------- 284 + YD +N W R E H+ + + + + R + Sbjct: 295 TSHEAYDHWNGK---WYRKTKACNDPEFAIDVSHKSLKNGRFCEDGIWRQMLTVHDVVNS 351 Query: 285 ----------LGQFPQQEVNNFIPHNYIEEAMS----------------------REAID 312 ++ E NN +I++A S Sbjct: 352 GFDRIDISVLENEYSTDEFNNLFMCKFIDDAHSAFNLKQIMDCVGDSTKWTDFNLEWERP 411 Query: 313 DLYAPLIMGCDIAGEGGDKTV 333 P+++G D A G +V Sbjct: 412 FALRPVVIGFDPARFGDKASV 432 >gi|331003174|ref|ZP_08326682.1| hypothetical protein HMPREF0491_01544 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412930|gb|EGG92309.1| hypothetical protein HMPREF0491_01544 [Lachnospiraceae oral taxon 107 str. F0167] Length = 762 Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 27/188 (14%), Positives = 54/188 (28%), Gaps = 11/188 (5%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 + P+ Q + MEA+ + + + G GKT + +L R Sbjct: 28 NIRSPYEHQKKAMEAL-------DKINKEESYSTLVVLPTGGGKTYTASMWLLKNAIDRK 80 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 I+ IA+ + L AE + + S + + + D Sbjct: 81 -KKILWIAHRQMLLDQA--AESFQKFAYAEVMPHISSFSFRIVSGASSHDR-TIDIKADD 136 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226 I+ + + + DEA + + ++ + E N I Sbjct: 137 NLLIISKDSIGRNIDRLDKWLEGEKELYLVVDEAHHSTAKTYRKVINYVKEKVLNLKLIG 196 Query: 227 TSNTRRLN 234 + T Sbjct: 197 LTATPFRT 204 >gi|315612672|ref|ZP_07887584.1| conserved hypothetical protein [Streptococcus sanguinis ATCC 49296] gi|315315259|gb|EFU63299.1| conserved hypothetical protein [Streptococcus sanguinis ATCC 49296] Length = 881 Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 25/196 (12%), Positives = 59/196 (30%), Gaps = 30/196 (15%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 ++Q + ++ + + ++A G GKTT+ + R G + Sbjct: 15 RQYQKQVLDRFQDYQADGHVH--------LVAAP-GSGKTTIG-----IELIARFGNPAL 60 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + + E +W+ + + Q LS S E+ ++ ++ Sbjct: 61 ILVPT------VTIRE--QWVDRIQTAFLEDGQRLSDLVSQNLKEMKVLTIVTYQAFHSA 112 Query: 172 TCRTYSEERPDTFVG--------PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223 + S+E + + DE + KS+ F + P + Sbjct: 113 MNQLQSQEDGEAEDFVGFDLLASLRAQKVATLCLDECHHLRNEWWKSLEAFRKQYGPLKL 172 Query: 224 WIMTSNTRRLNGWFYD 239 +T+ + Sbjct: 173 ISLTATPPYDSEPELW 188 >gi|291236967|ref|XP_002738409.1| PREDICTED: Dicer Related Helicase family member (drh-1)-like [Saccoglossus kowalevskii] Length = 877 Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 23/190 (12%), Positives = 47/190 (24%), Gaps = 20/190 (10%) Query: 14 ELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHF-SQPHRWQLEFMEAVDVHCHSNVNN 72 +L L E N +P E + +Q E ++ Sbjct: 149 KLMVTLNVDETDTDKMNAAENAESSDKVDEPEEDIVIELRPYQAELVK------------ 196 Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 + +SA G GKT + A++ L + R ++ + N ++ E Sbjct: 197 PSIFGHNVIVSAPTGSGKTRIAAFITLNHLKQRENAKVLLLVNKVPLVEQHYKKEFKLLT 256 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 S + + + + + + T Sbjct: 257 SKYKVSKICGESAARVSLKHLVEKNDVVILTAQILENALN-------NGEDNEKLELTDF 309 Query: 193 MAVFNDEASG 202 + DE Sbjct: 310 SLLIFDECHH 319 >gi|238484115|ref|XP_002373296.1| DEAD/DEAH box helicase, putative [Aspergillus flavus NRRL3357] gi|220701346|gb|EED57684.1| DEAD/DEAH box helicase, putative [Aspergillus flavus NRRL3357] Length = 1678 Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 28/230 (12%), Positives = 65/230 (28%), Gaps = 22/230 (9%) Query: 39 GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98 G P + +P +WQ E ++ +D + A GKT ++ + + Sbjct: 587 GSAPDPRVYDFEPDKWQREILDQIDA------------RKSLFVVAPTSAGKTFISFYAI 634 Query: 99 LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 ++ I+ +A ++ + + L++H + Sbjct: 635 KQILEDDNEGVIVYVAPTKALVNQIA---AEVQARFSKNFKETGKSVLAIHTRDYRINNP 691 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218 + + + + + D + ++ + DE + I L Sbjct: 692 TGCQVLITVPHILQIMLLAPANADPW----SSRVKRIIFDEIHCIGQADDGVIWEQLLLL 747 Query: 219 NPNRFWIM---TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265 P + N + N W D K + TR + + Sbjct: 748 APCPIIALSATVGNPQEFNKWLELTQRANGNDLKMIEHSTRYSDLRKYTY 797 >gi|309359929|emb|CAP32084.2| hypothetical protein CBG_13269 [Caenorhabditis briggsae AF16] Length = 800 Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 20/169 (11%), Positives = 48/169 (28%), Gaps = 16/169 (9%) Query: 40 IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99 G L+ + +Q + + + + + + G GKT ++ Sbjct: 323 NLGIDLKPSTTLRPYQEKSLRKMFGNSRARSG--------VIVLPC-GAGKT-----LVG 368 Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159 T + +ANS ++ W K S + + + P+ A+ + Sbjct: 369 VTAVTTVNKRCLVLANSNVSVEQ--WRAQFKLWSTIQDKQLVRFTREAKDPAPSGADATK 426 Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208 + I + + + + + DE P + Sbjct: 427 PVVCISTYSMVAYSGRRTLQAEEAMKFIEKQEWGLLLLDEVHTIPAKMF 475 >gi|308483808|ref|XP_003104105.1| hypothetical protein CRE_01011 [Caenorhabditis remanei] gi|308258413|gb|EFP02366.1| hypothetical protein CRE_01011 [Caenorhabditis remanei] Length = 797 Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 20/169 (11%), Positives = 48/169 (28%), Gaps = 16/169 (9%) Query: 40 IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99 G L+ + +Q + + + + + + G GKT ++ Sbjct: 306 NLGIDLKPSTTLRPYQEKSLRKMFGNSRARSG--------VIVLPC-GAGKT-----LVG 351 Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159 T + +ANS ++ W K S + + + P+ A+ + Sbjct: 352 VTAVTTVNKRCLVLANSNVSVEQ--WRAQFKLWSTIQDKQLVRFTREAKDPAPSGADATK 409 Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208 + I + + + + + DE P + Sbjct: 410 PVVCISTYSMVAYSGRRTLQAEEAMKFIEKQEWGLLLLDEVHTIPAKMF 458 >gi|268572763|ref|XP_002641406.1| Hypothetical protein CBG13269 [Caenorhabditis briggsae] Length = 789 Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 20/169 (11%), Positives = 48/169 (28%), Gaps = 16/169 (9%) Query: 40 IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99 G L+ + +Q + + + + + + G GKT ++ Sbjct: 312 NLGIDLKPSTTLRPYQEKSLRKMFGNSRARSG--------VIVLPC-GAGKT-----LVG 357 Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159 T + +ANS ++ W K S + + + P+ A+ + Sbjct: 358 VTAVTTVNKRCLVLANSNVSVEQ--WRAQFKLWSTIQDKQLVRFTREAKDPAPSGADATK 415 Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208 + I + + + + + DE P + Sbjct: 416 PVVCISTYSMVAYSGRRTLQAEEAMKFIEKQEWGLLLLDEVHTIPAKMF 464 >gi|17556358|ref|NP_499487.1| hypothetical protein Y66D12A.15 [Caenorhabditis elegans] gi|15795210|emb|CAC70144.1| C. elegans protein Y66D12A.15, partially confirmed by transcript evidence [Caenorhabditis elegans] Length = 789 Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 20/169 (11%), Positives = 48/169 (28%), Gaps = 16/169 (9%) Query: 40 IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99 G L+ + +Q + + + + + + G GKT ++ Sbjct: 312 NLGIDLKPSTTLRPYQEKSLRKMFGNSRARSG--------VIVLPC-GAGKT-----LVG 357 Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159 T + +ANS ++ W K S + + + P+ A+ + Sbjct: 358 VTAVTTVNKRCLVLANSNVSVEQ--WRAQFKLWSTIQDKQLVRFTREAKDPAPSGADATK 415 Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208 + I + + + + + DE P + Sbjct: 416 PVVCISTYSMVAYSGRRTLQAEEAMKFIEKQEWGLLLLDEVHTIPAKMF 464 >gi|302677857|ref|XP_003028611.1| hypothetical protein SCHCODRAFT_78566 [Schizophyllum commune H4-8] gi|300102300|gb|EFI93708.1| hypothetical protein SCHCODRAFT_78566 [Schizophyllum commune H4-8] Length = 1005 Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 42/298 (14%), Positives = 85/298 (28%), Gaps = 42/298 (14%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 E + + + + G GKT+ + L+ P I+ A Sbjct: 504 EEQLRTIAAVLRLPPGSPP-----LIVFGPPGTGKTSTIVEAIHQLLQRDPNTRILACAP 558 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK-------- 167 S + L ++S ++L F + SLS S L + + D+ Sbjct: 559 S-NTAADGLAQKLSG--ALLDRTQLFRLNSLSRKVSDLPQALKKFCLINDNTVFAVPPKD 615 Query: 168 ---HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224 Y + T + +G H +F DE + + +++ T ++ + Sbjct: 616 VLASYRVVVSTCITAGVPSGLGIRAGHFDWIFIDECAQATEP--AAMIPLKTLVDKSTNV 673 Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE-----------GIDSGFHEGIISRY 273 ++ + ++L + F L + Y + + S Sbjct: 674 VLAGDPQQLGPIVHSKFANTLGLKESYMGRLMEQQEVYDLKNSQHLFRIMKLIKSFRSHP 733 Query: 274 GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL----IMGCDIAGE 327 L R G+ E + P+ ++G D A E Sbjct: 734 ALLDYSNRRFYNGELIASAD-----PILTHSLEGSEILPKKSFPILFHAVIGKD-ARE 785 >gi|217971577|ref|YP_002356328.1| type III restriction protein res subunit [Shewanella baltica OS223] gi|217496712|gb|ACK44905.1| type III restriction protein res subunit [Shewanella baltica OS223] Length = 1055 Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 34/226 (15%), Positives = 61/226 (26%), Gaps = 28/226 (12%) Query: 10 KLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSN 69 E A N + G + +P Q E +E + Sbjct: 279 WESNEFELFSGDASSKEKLNNALKEAKGSGTESSSFHFDIKPFAHQREILEQLA------ 332 Query: 70 VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129 V S FK I A G GKT ++A+ P + + +A+ + L +S Sbjct: 333 VERSVHGRFKNLIVAATGTGKTIISAFDFARFYKLHPDANFLFVAHRQ----EILQQALS 388 Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189 + +L + + E+ P+ + + S + Sbjct: 389 AYRGVLKNNQFGELWVAEHKPNSYKH---------------LFASIQSLNLQLDNLPLAA 433 Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 + DE G P +T+ R +G Sbjct: 434 DFYDYIVIDEVHHVAASSY---RGLLAHFEPTILLGLTATPERHDG 476 >gi|152998912|ref|YP_001364593.1| type III restriction protein res subunit [Shewanella baltica OS185] gi|151363530|gb|ABS06530.1| type III restriction protein res subunit [Shewanella baltica OS185] Length = 1055 Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 34/226 (15%), Positives = 61/226 (26%), Gaps = 28/226 (12%) Query: 10 KLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSN 69 E A N + G + +P Q E +E + Sbjct: 279 WESNEFELFSGDASSKEKLNNALKEAKGSGTESSSFHFDIKPFAHQREILEQLA------ 332 Query: 70 VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129 V S FK I A G GKT ++A+ P + + +A+ + L +S Sbjct: 333 VERSVHGRFKNLIVAATGTGKTIISAFDFARFYKLHPDANFLFVAHRQ----EILQQALS 388 Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189 + +L + + E+ P+ + + S + Sbjct: 389 AYRGVLKNNQFGELWVAEHKPNSYKH---------------LFASIQSLNLQLDNLPLAA 433 Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 + DE G P +T+ R +G Sbjct: 434 DFYDYIVIDEVHHVAASSY---RGLLAHFEPTILLGLTATPERHDG 476 >gi|126172615|ref|YP_001048764.1| type III restriction enzyme, res subunit [Shewanella baltica OS155] gi|125995820|gb|ABN59895.1| type III restriction enzyme, res subunit [Shewanella baltica OS155] Length = 1055 Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 34/226 (15%), Positives = 61/226 (26%), Gaps = 28/226 (12%) Query: 10 KLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSN 69 E A N + G + +P Q E +E + Sbjct: 279 WESNEFELFSGDASSKEKLNNALKEAKGSGTESSSFHFDIKPFAHQREILEQLA------ 332 Query: 70 VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129 V S FK I A G GKT ++A+ P + + +A+ + L +S Sbjct: 333 VERSVHGRFKNLIVAATGTGKTIISAFDFARFYKLHPDANFLFVAHRQ----EILQQALS 388 Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189 + +L + + E+ P+ + + S + Sbjct: 389 AYRGVLKNNQFGELWVAEHKPNSYKH---------------LFASIQSLNLQLDNLPLAA 433 Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 + DE G P +T+ R +G Sbjct: 434 DFYDYIVIDEVHHVAASSY---RGLLAHFEPTILLGLTATPERHDG 476 >gi|154247555|ref|YP_001418513.1| hypothetical protein Xaut_3628 [Xanthobacter autotrophicus Py2] gi|154161640|gb|ABS68856.1| protein of unknown function DUF264 [Xanthobacter autotrophicus Py2] Length = 690 Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 27/244 (11%), Positives = 58/244 (23%), Gaps = 41/244 (16%) Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQ-SMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191 L + + + + S+ + ++ T ++ HN Sbjct: 324 RRLMPKSAKVWEGRRAFNTRGDHHYAKVVSVEYIGRGPVVSLGTSTKTLIADGFLGHNCT 383 Query: 192 GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS--NTRRLNGWFYDIFNIPLEDW- 248 ++ +E S P ++ P N W Y F + Sbjct: 384 ---LYFNECSQIPYSSILVARTRLAQVVPGLMQRALYDLNPAGTGHWTYREFIEGRDPIS 440 Query: 249 -----------KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297 + + + F + + R G + + Sbjct: 441 GAPLSAPDNFQHMFLNPGDNAKNLSPEFLRSLEALPEKQR---RRFFDGMYVAEIDGALW 497 Query: 298 PHNYIEEAMSREAIDDLYA--PLIMGCD------------------IAGEGGDKTVVVFR 337 + IE S + +++G D +AG D T V+ Sbjct: 498 TLDLIERCRSEPIAPGDHRLRRIVIGVDPSGAANKEDARSDEIGIVVAGMMDDGTAVILE 557 Query: 338 RGNI 341 G + Sbjct: 558 DGTV 561 >gi|293433090|ref|ZP_06661518.1| terminase [Escherichia coli B088] gi|291323909|gb|EFE63331.1| terminase [Escherichia coli B088] Length = 591 Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 38/321 (11%), Positives = 81/321 (25%), Gaps = 34/321 (10%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 W E + H N+ I R IG T A+ I Sbjct: 140 DIWAEEHLFEYQKHLRRNIGQQVRN-----ILKSRQIGATWYFAFEAFENAVMTGDPQIF 194 Query: 112 CIANSET----QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 A+ + AE +++ + + S S + Sbjct: 195 LSASKVQAEYFRSYIVNIAEQYFGITLTGNPIRLSNGAELRFLSTNKNTAQSYSGHLYCD 254 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227 Y + + H+ F+ ++ T + + + R Sbjct: 255 EYFWVPNFARLNEVASAMATHDKWRTTYFSTPSAKTHQAYPFWTGEEWKQGSKKRAAAQF 314 Query: 228 SNTRRLNGWFYDIFNIPLEDWK-RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 + + P W+ ++ G + E + +RY ++ + + Sbjct: 315 PSFDEMRNGGRLC---PDGQWRYVITMEDAIAGGFNLANIEKLRNRY--NTATFNMLYMC 369 Query: 287 QFPQQEVNNFIPHNYIEEA-----MSREAIDDLYAPL----IMG-CDIAGEGGDKTVVVF 336 F ++ + +E ++ D P + G D A G D + V Sbjct: 370 VFVD-SKDSVFSFSDLEACGVEVDTWQDHNPDAARPFGDRPVWGGFDPARSG-DLSCFVI 427 Query: 337 RRGN-------IIEHIFDWSA 350 + + +W Sbjct: 428 IAPPMYAAEKFRVLKVINWKG 448 >gi|15834223|ref|NP_312996.1| portal protein [Escherichia coli O157:H7 str. Sakai] gi|168761523|ref|ZP_02786530.1| protein gp28 [Escherichia coli O157:H7 str. EC4501] gi|217326314|ref|ZP_03442398.1| hypothetical protein ESCCO14588_1761 [Escherichia coli O157:H7 str. TW14588] gi|13364445|dbj|BAB38392.1| putative portal protein [Escherichia coli O157:H7 str. Sakai] gi|189367967|gb|EDU86383.1| protein gp28 [Escherichia coli O157:H7 str. EC4501] gi|217322535|gb|EEC30959.1| hypothetical protein ESCCO14588_1761 [Escherichia coli O157:H7 str. TW14588] gi|326348041|gb|EGD71751.1| Phage terminase, large subunit [Escherichia coli O157:H7 str. 1044] Length = 554 Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 37/253 (14%), Positives = 72/253 (28%), Gaps = 39/253 (15%) Query: 86 RGIGKTTLNAWMMLWLIS---TRPGMSIICIANSETQLKNTL--WAEVSKWLSMLPHRHW 140 R G T A + + R G ++ + + + + A S+ + L Sbjct: 67 RRTGLTWAEAGRNVITAAKPKRRGGRNVFYVGSKQEMALEYISACALFSRAFNQLADADV 126 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 +E E+L + + + I + P G V DEA Sbjct: 127 YEQT---FWDRDKKEEILTYMIRFPNSGFKIQALSSR---PSNLRGLQGD----VVIDEA 176 Query: 201 SGTPDIINKSILGF--FTELNPNRFWIMTSN-TRRLNGWFYDIFNIPLEDWKRYQIDTRT 257 + + +++ + T I T N L + +D+ ++I Sbjct: 177 AF-HESLDELLKAAMALTMWGARVRIISTHNGVDNLFNQYIQEAREGRKDYSVHRITLDD 235 Query: 258 ------------------VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299 + + + + D E P++ +IPH Sbjct: 236 AIADGLYRRICYVTGREWSPESEQKWRDDLYKNAPTREDA-DEEYGCI-PKKSGGAYIPH 293 Query: 300 NYIEEAMSREAID 312 IE AM R+ Sbjct: 294 ALIEMAMLRDIPI 306 >gi|166030771|ref|ZP_02233600.1| hypothetical protein DORFOR_00445 [Dorea formicigenerans ATCC 27755] gi|166029353|gb|EDR48110.1| hypothetical protein DORFOR_00445 [Dorea formicigenerans ATCC 27755] Length = 456 Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 21/178 (11%), Positives = 45/178 (25%), Gaps = 7/178 (3%) Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GMSIICIANSETQLK 121 + + G KT + + L I P I+ + Sbjct: 241 FLQEALMKPADEAPLVIVKGMAGTAKTFYSLAVGLEKILNNPTGEYRRILICRPNAQFDS 300 Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 + + + + P M +L + + K I R + Sbjct: 301 DIGFLPGDEQEKISPL-MRPIMDNLEQLIDSDEEARYQDEQELQGKIEEIFARGIIQAEA 359 Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239 F+ + + DEA + G T ++ + +++ F D Sbjct: 360 MNFIRGRSFVNTYLIIDEAQNMTPNQ---VKGIITRAGKGTKIVLLGDPNQIDRPFLD 414 >gi|148241989|ref|YP_001227146.1| hypothetical protein SynRCC307_0890 [Synechococcus sp. RCC307] gi|147850299|emb|CAK27793.1| Hypothetical protein SynRCC307_0890 [Synechococcus sp. RCC307] Length = 98 Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 28/68 (41%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 + +GR GKT L + L T+PG + +A S Q K+ WA++ + Sbjct: 24 VVFSGRRFGKTRLMLTAGVELCLTKPGAKVFHLAPSRKQAKDIAWADLKGVVLQSLLSPV 83 Query: 141 FEMQSLSL 148 + L Sbjct: 84 WVDTEKPL 91 >gi|328774208|gb|EGF84245.1| hypothetical protein BATDEDRAFT_9192 [Batrachochytrium dendrobatidis JAM81] Length = 581 Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 31/258 (12%), Positives = 70/258 (27%), Gaps = 35/258 (13%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 ++ G+GKT L A +M P II +A ++ V++ + Sbjct: 52 NTLVALPTGLGKTFLAAVVMYNYYRWFPEGKIIFMAPTK--------PLVAQQIEAC--- 100 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP--HNTHGMAVF 196 F++ + + + I + + + + Sbjct: 101 --FKITGIHQDMTYELTGTTKSETRIGIWKQKRVFFLTPQVMQNDLRSAACSADKVVLLV 158 Query: 197 NDEASGTP-DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255 DEA + ++ ++ + + S T + + + +I T Sbjct: 159 VDEAHRATGNYAYCEVIRELSKASSPFRVLALSATP-GSDMKAVQHVVNNLLIQHIEIRT 217 Query: 256 RTV----EGIDSGFHEGIISRYGLDSDV-----------ARIEI--LGQFPQQEVNNFIP 298 I S E II + + G F +++ Sbjct: 218 EDSFDIRPFIFSRQIEEIIVSLTPQITRIVDAFAKVVSIFLVRLCNHGVFYEKDPRAVSR 277 Query: 299 HNYIEEAMSREAIDDLYA 316 + ++ A R + A Sbjct: 278 YALLD-ARKRWIDNHKDA 294 >gi|320589733|gb|EFX02189.1| dead deah box DNA helicase [Grosmannia clavigera kw1407] Length = 1472 Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 20/240 (8%), Positives = 56/240 (23%), Gaps = 20/240 (8%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +P WQ + ++A+D + A GKT ++ + M ++ Sbjct: 534 EPDGWQRKVLDAIDE------------RQSLFVVAPTSAGKTFISFYAMKQVLKQSNDGV 581 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ--SMGIDSK 167 ++ +A ++ + +++ P ++ + Sbjct: 582 LVYVAPTKALVNQVAAEIEARFSKTFPQSSSGGKSVWAIKTRDQCINNPTGCQVLVTVPH 641 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM- 226 I + S + DE + + P + Sbjct: 642 MLQILLMSPSSMEGSNPWPLRLRW---IIFDEIHSIGQSDEGVVWEQLVLMAPCPIIALS 698 Query: 227 --TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 N W + +R + + + ++ + Sbjct: 699 ATVGNPYAFRDWLTSCEKSKGRQIRMITHSSRYSDLRNYVWMPSRHFQFSGVTAEDSRRW 758 >gi|328552921|gb|AEB23413.1| putative helicase, ATP-dependent, intein-containing [Bacillus amyloliquefaciens TA208] Length = 1021 Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 32/273 (11%), Positives = 63/273 (23%), Gaps = 49/273 (17%) Query: 96 WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 + P +++ A+++ W E + + L +PS Sbjct: 545 MVAYHTAICFPNVTLAITASTKESAVKI-WKEKHE-------------EILRFYPSIKDE 590 Query: 156 ELLEQSMGIDSKHYTITCRTYS-EERPDTFVGPHNTHGMAVFNDEASGTP-DIINKSILG 213 E + + G G +E++ D+ + +I Sbjct: 591 IKSENFSKDSGRVEFQNGAIIDNLANAQSSKGLRRRRGSL---EESALIDKDLYDDAIEP 647 Query: 214 -------FFTELNPNRFWIMTSNTRRLNGWFYDIFNIP----------LEDWKRYQIDTR 256 T N +G+ L+ + D R Sbjct: 648 IFNIPRTTMTGEIDPAELNGQINRFSTSGYKNSDEYEKILTMVKETGDLKGSFVFGSDWR 707 Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN-YIEEAMSREAI---- 311 I + R L + I + I+ Sbjct: 708 IPIHFGRQKMSVINKARQGNVTRFRQNYLCDWIGASDGALINISKLIKARTITHPELSCP 767 Query: 312 DDLYA-----PLIMGCDIAG---EGGDKTVVVF 336 D ++G D+A E +KT +V Sbjct: 768 RDKNKNFLLHEYVIGVDVARSAAESNNKTAIVV 800 >gi|88195251|ref|YP_500054.1| phage terminase large subunit [Staphylococcus aureus subsp. aureus NCTC 8325] gi|87202809|gb|ABD30619.1| phage terminase, large subunit, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|329729404|gb|EGG65809.1| putative phage terminase, large subunit [Staphylococcus aureus subsp. aureus 21189] Length = 563 Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 49/348 (14%), Positives = 91/348 (26%), Gaps = 60/348 (17%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ + ++ H + I GR GKTT + + + +S G Sbjct: 81 QPWQHFIIGSLFGWVHK--ETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAE 138 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I +AN Q + L+ E + P +L E + + + Sbjct: 139 IHLLANVMKQAR-ILFDESKAMIKASP-------------------KLRENFRPLRDEIH 178 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTS 228 + + + DE D + I +T+ Sbjct: 179 YDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITT 238 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRT----------------------VEG----ID 262 +L+G ++ + R D RT ID Sbjct: 239 AGYQLDGPLVNMVEAGRDTLDRIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSID 298 Query: 263 SGFHEGIISRYGLDSDV---ARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPL 318 + + D + F + +FI + +++ + P Sbjct: 299 LAEMKEEWEKAKRTPDERGDFITKRFNIFANNDEMSFIDYPTLQKNNDIISLDELEGRPC 358 Query: 319 IMGCDIAGEGGDKTV----VVFRRGNIIEHIFDWSAKLIQETNQEGCP 362 +G D++ D T G + W K E + E P Sbjct: 359 TIGYDLSET-EDFTAACATFALDNGKVAVLTHSWIPKHKVEYSNEKIP 405 >gi|254508223|ref|ZP_05120347.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus 16] gi|219548840|gb|EED25841.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus 16] Length = 403 Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 44/316 (13%), Positives = 77/316 (24%), Gaps = 50/316 (15%) Query: 43 KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102 + +P + Q E + SA G GKT L + Sbjct: 11 IEEMGYDRPTQIQAEAIPQALDG------------RDILASAPTGTGKTAAFVLPALQYL 58 Query: 103 STRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 P I+ + + R + L++ + Sbjct: 59 QDFPRRKPGPARILILTPTRELAMQV----------ADQARALAKHTKLNIFTITGGVQY 108 Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217 E + + + + DEA D+ + + Sbjct: 109 QEHADILGKTQDIVVATPGRLMEYINAERFDCRAIEWLVLDEADRMLDMGFGPTVDRLSN 168 Query: 218 LNPNRFWIMTSNTR----RLNGWFYDIFNIP---------LEDWKRYQIDTR-TVEGIDS 263 R + + + G+ D+ P E K Q R Sbjct: 169 ECRWRKQTLLFSATLEGKGVEGFTADLLKDPADIDAEPSRRERKKIAQWYHRADDMNHKL 228 Query: 264 GFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AIDDL 314 + II+ S V E LG+ + IP +I E R D Sbjct: 229 ELLKKIITDQAERSIVFLKTRERLGELRTELEKAQIPCAWIQGEMPQDRRNNAIARFRDG 288 Query: 315 YAPLIMGCDIAGEGGD 330 +++ D+A G D Sbjct: 289 TVNVLLATDVAARGID 304 >gi|194899456|ref|XP_001979275.1| GG24642 [Drosophila erecta] gi|190650978|gb|EDV48233.1| GG24642 [Drosophila erecta] Length = 1450 Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 30/211 (14%), Positives = 55/211 (26%), Gaps = 11/211 (5%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + G+GKT + A +M P I+ +A + + + A ++P Sbjct: 77 NTLVVLPTGLGKTFIAAVLMYNFYRWYPKGKIVFMAPTRPLVSQQIHASQK----IMPFP 132 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 +Q P AEL + + + D + D Sbjct: 133 SADTVQLTGQLPRPKRAELWDSKRVFFATPQVVHS---DMLTADGGSNFPFGSIKLIVVD 189 Query: 199 EAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLN--GWFYDIFNIPLEDWKRYQIDT 255 EA + N N + S T N+ + + + + Sbjct: 190 EAHRAKGRYAYTQVTDCLMARNRNFRILALSATPGRTMEDVAAVCQNLYISNLQVRWDTS 249 Query: 256 RTV-EGIDSGFHEGIISRYGLDSDVARIEIL 285 V I I+ R +L Sbjct: 250 IDVQPYIHRRTIRTIVVSLKERIKEPRERLL 280 >gi|254415209|ref|ZP_05028971.1| CRISPR-associated helicase Cas3 domain protein [Microcoleus chthonoplastes PCC 7420] gi|196178015|gb|EDX73017.1| CRISPR-associated helicase Cas3 domain protein [Microcoleus chthonoplastes PCC 7420] Length = 703 Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 50/235 (21%), Gaps = 25/235 (10%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEH-------------- 47 P E L ++ A ++ W P Sbjct: 153 PSHHPEHPLTEDLLIRIIFSALVDADRESAARFLGDWDTVTPPTIEQLISQFETHYHHLI 212 Query: 48 ---FSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 P + HC + P F+ + G GKT L Sbjct: 213 QNAADTPINA---IRRDIYRHCQAAATLK-PGFFRL--TTPTGGGKTLSVMAFALHHAQN 266 Query: 105 RPGMSIICIANSETQLKNT--LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162 II + ++ ++ E ++L H + + + Sbjct: 267 YQQKRIIYCPPFTSIIEQAAQVYRESFSENAVLEHHSGVVFDTHTDELHHYQFAAQRWDY 326 Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217 I + P H + DE P K I+ Sbjct: 327 PIIVSTTVQLFESLFSRHPSQCRKVHRITNSVIILDEVQALPTKYLKPIMSMLRG 381 >gi|301331685|gb|ADK70800.1| terminase [Elephant endotheliotropic herpesvirus 1A] Length = 660 Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 23/204 (11%), Positives = 61/204 (29%), Gaps = 21/204 (10%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAI-SAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 E+++ + + N + + K + R GKT + ++ +LI +S+ +A+ Sbjct: 175 EYIKRLFNIENVNTSVLDTFKHKTTVFLVPRRHGKTWILTPIITFLIKNFSNISVGYVAH 234 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 + ++ + EV + + + + + +S+ + Sbjct: 235 QKHVSQHVM-KEVEILCRR------------EIPYTVENKDNVISVIRTNSRSCALFASC 281 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 + + DE++ +I+GF + +I + NT + Sbjct: 282 F------NTNSIRGQSFNILLVDESNFIKKEALHAIIGFLAQSTAKIIFISSCNTSTQST 335 Query: 236 WFYDIFNIPLEDW-KRYQIDTRTV 258 F Sbjct: 336 SFLAHVKKTPTQILNVISYVCEEH 359 >gi|291335182|gb|ADD94806.1| hypothetical protein [uncultured phage MedDCM-OCT-S12-C102] gi|291336563|gb|ADD96112.1| hypothetical protein [uncultured organism MedDCM-OCT-S04-C6] Length = 555 Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 28/260 (10%), Positives = 60/260 (23%), Gaps = 46/260 (17%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 I G GK+ A M+ + RP M I +S + + LP + Sbjct: 78 IFGGNRGGKSRYLASRMVRAMVNRPNMRIWSCHSSNDSSIQVQQPYIHTY---LPQQWLA 134 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + +++ + + + S + + + T ++ DE Sbjct: 135 QKKAVRSVANISFTQKNGFSGRTIVGPN--HSQMWFKNYTQDLSTLEGTELDLIWFDEL- 191 Query: 202 GTPDIINKSILGFFTELNPNRFWIMT--------------------------------SN 229 P +++ T N Sbjct: 192 -VPQSWVETLKYRLVSRKGKMLITFTPIEGYSSAVKSAMEGAIIEETREAKLIDPNSPGN 250 Query: 230 -TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE----- 283 G K + + + + + R Sbjct: 251 IPGVPKGHMPYRARTKNGSGKIFWFYSEWNPYTPFDRLQKTLKGRTREELEIRAYGYVSN 310 Query: 284 -ILGQFPQQEVNNFIPHNYI 302 + G+FP+ N + + I Sbjct: 311 PVTGKFPRFTDRNIVKASDI 330 >gi|150007526|ref|YP_001302269.1| putative phage large subunit terminase [Parabacteroides distasonis ATCC 8503] gi|149935950|gb|ABR42647.1| putative phage large subunit terminase [Parabacteroides distasonis ATCC 8503] Length = 422 Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 28/286 (9%), Positives = 71/286 (24%), Gaps = 41/286 (14%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPG-----MSIICIANSETQLKNTLWAEVSK 130 F I+ GRG GK+ + + L I+ + ++ E+ + Sbjct: 16 EKFIILITGGRGSGKSFNASTFIERLTFELTPVEKIVHQILYTRYTMVSAGMSIIPEMME 75 Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190 + + +F+ + + ++ + + S + T ++ Sbjct: 76 KIELDGTTKYFKTTKTDIVNKMTKSRIMFRGIKTSSGNQTAKLKSIQGITTFVCDEAEEW 135 Query: 191 HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE---D 247 I+ + I+ N N + Y + + Sbjct: 136 TNE------------EEFDKIMLSIRKKGIQNRIIIIMNPCDSNHFIYKKYIENTHKLVE 183 Query: 248 WKRYQIDTRTVEGI--------------DSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293 Q+ T + F + + + + ++G++ Sbjct: 184 IDGVQVQISTHPNVLHIHTTYLDNLENLSPEFLKEVEDMKVNNPEKYAHVVIGRWADVAE 243 Query: 294 NNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRG 339 I + + +G D D + R G Sbjct: 244 GAVFKKWGI-----VDEFPAWAKKVAIGQDFGYT-HDPSA-SIRCG 282 >gi|114797384|ref|YP_761226.1| ATP-dependent DNA helicase domain-containing protein [Hyphomonas neptunium ATCC 15444] gi|114737558|gb|ABI75683.1| ATP-dependent DNA helicase, RecQ family/ UvrD/REP helicase domain protein [Hyphomonas neptunium ATCC 15444] Length = 1715 Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 25/233 (10%), Positives = 57/233 (24%), Gaps = 17/233 (7%) Query: 12 EQELHEMLMHAECVLSFKNFVMRFFP--W-GIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68 EQ L M + + F W + L + P WQ + + ++ Sbjct: 1049 EQGLISMNRALSLSHDYFSLERDVFLRRWLPNRSADLRRQTMPASWQ-KIVGSLGNRVQM 1107 Query: 69 NVNNSNPTIFKCAISAGRGIGKTTLNA--WMMLWLISTRPGMSIICIANSETQLKNTLWA 126 ++ + + AG G GKT + L + I+ +A + + L Sbjct: 1108 DIVSDERDQTNVLVLAGPGSGKTKVLVHRIAFLIRVRREDPKGILVLAYNRHAAQEILVR 1167 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ-------SMGIDSKHYTITCRTYSEE 179 + + + ++ G I++ + + Sbjct: 1168 LRALIGEDAAGVNISTCHAFAMRLVGMSFVGRSDMQTTADFDRAIEAATQLLNGDGLTTV 1227 Query: 180 RPDTFVGPHNTHGMAVFNDEASGT-PDII---NKSILGFFTELNPNRFWIMTS 228 + + DE P+ + + Sbjct: 1228 EAEAQRDTLVQGYRWILVDEYQDIGPNEHGLVAAIAGRSLDDPDQRLSLFAVG 1280 >gi|42518569|ref|NP_964499.1| RNA helicase [Lactobacillus johnsonii NCC 533] gi|41582854|gb|AAS08465.1| probable RNA helicase [Lactobacillus johnsonii NCC 533] Length = 461 Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 27/234 (11%), Positives = 58/234 (24%), Gaps = 23/234 (9%) Query: 37 PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96 P G +F +P + Q + + + A G GKT Sbjct: 15 PELQAGLEKINFKKPTKVQSSV---IPAFLNKK---------NVVVQAATGSGKTHAYLI 62 Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156 +L +I ++ + +L N L+ + R + + G Sbjct: 63 PILNMIDESAPVTQAIVTAPSRELANQLYKVARQ------LRDASGLNISIEYLGGGNDR 116 Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG-TPDIINKSILGFF 215 + I + + + A DEA + Sbjct: 117 NRQIEKAESRAPQLIIATPGRLHDFASKKFINLENVKAFIIDEADMTLDMGFLGQMDEIM 176 Query: 216 TELNPNRFWIMTSN--TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267 ++L+ S +L + + P ++ I + + Sbjct: 177 SKLDKKAVLGAFSATIPVKLENFLRKYMSKP--EFIVIDNPAIIAPTIQNDLID 228 >gi|332800334|ref|YP_004461833.1| Terminase [Tepidanaerobacter sp. Re1] gi|332698069|gb|AEE92526.1| Terminase [Tepidanaerobacter sp. Re1] Length = 521 Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 38/318 (11%), Positives = 85/318 (26%), Gaps = 57/318 (17%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP--GMSI 110 WQ + + + + T + + + GK+ L A + L+L G + Sbjct: 34 PWQDKIVRDIFGTVKEDGYRQYNTAY---VEIPKKNGKSELAAAIALYLTCGDGEWGAEV 90 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 A Q F++ + + ++ + Y Sbjct: 91 YGCAADRQQASIV-----------------FDVAVDMVDQCPALKKRIKPVLSQKRLVYM 133 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 T Y + + H + V DE P+ ++ + + T Sbjct: 134 PTASFYQVLSAEAY-TKHGLNVHGVVFDELHAQPNRQLYDVMTKGSGDARKQPLFFLITT 192 Query: 231 --RRLNGWFYDIFNIPLE----------------------DWKRYQIDTRTVEGIDSGFH 266 + Y++ + DW ++ + +D Sbjct: 193 AGTDRHSICYEVHQKAEDILRGKRVDPTFYPVIYGIDDDDDWADEKVWRKANPSLDHTID 252 Query: 267 EGIISRYGL-------DSDVARIEILGQFPQQEVNNFIPHNYIEEA-MSREAIDDLYAPL 318 + + ++ R L Q+ +Q V ++P + +E + Sbjct: 253 IEKVRAAFQNAKQNPAEENLFRQLRLNQWVKQSV-RWMPMHVWDECSFKVDPEKLKGRKC 311 Query: 319 IMGCDIAGEGGDKTVVVF 336 G D++ D T V Sbjct: 312 YGGLDLS-SSIDITAFVL 328 >gi|149180233|ref|ZP_01858738.1| DNA/RNA helicase [Bacillus sp. SG-1] gi|148852425|gb|EDL66570.1| DNA/RNA helicase [Bacillus sp. SG-1] Length = 814 Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 31/230 (13%), Positives = 63/230 (27%), Gaps = 47/230 (20%) Query: 9 QKLEQELHEMLM---HAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVH 65 + EQE E ++ C + + K +P Q+E +E + Sbjct: 180 KWTEQEEVEAMLPEDEERCKDADVIH---------EEKGEYGTVEPRFAQIEALEEL--- 227 Query: 66 CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW 125 K + G+GKT L A + + ++ IA+ E L Sbjct: 228 ----DKTYEEGYRKAMVIMATGLGKTYLAA-----FFAQQRFKRVLFIAHREEIL----- 273 Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185 H E + P ++ ++ + T S ++ Sbjct: 274 -------------HQAEKSFNIVMPEASKGIYNGRTKEGEADFVFASVFTLSMKKH--LQ 318 Query: 186 GPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 + + DE + + + P +T+ R + Sbjct: 319 AFNPDSFDLIVIDEFHHAAADSYQRL---LSYFQPEFLLGITATPDRNDN 365 >gi|298247861|ref|ZP_06971666.1| conserved hypothetical protein [Ktedonobacter racemifer DSM 44963] gi|297550520|gb|EFH84386.1| conserved hypothetical protein [Ktedonobacter racemifer DSM 44963] Length = 499 Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 84/289 (29%), Gaps = 32/289 (11%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 +Q +A+ ++ +F R +GK L+A + +L+ SI+ Sbjct: 34 PYQELVGDAILESVLEGRGDTFTVMF------ARQMGKNQLSATLEAYLLFCMREGSIVK 87 Query: 113 IANSET-QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A + Q N+ +S + L ++ ++ + + + + + Sbjct: 88 AAPTYKPQTINSRQRLLSLLDNPLMRNRVWKHYGYTIGMAPRHE-----QVPYQTGPRVM 142 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNT 230 T + + DEA P+ + + + N ++ Sbjct: 143 FFSAGPGAS-----IVGATASLLLEIDEAQSIDPNKYDTDLRPMASTTNATT--VLYGTA 195 Query: 231 RRLNGWFYDIFNIPLE------DWKRYQIDTRTVEGIDSG---FHEGIISRYGLDSDVAR 281 + LE + + D RT+ I+ + E I R G D R Sbjct: 196 WSEETLLARMRTHNLELERLDGRQRHFAYDWRTLAAINDHYKRYVESEIKRLGEDHISIR 255 Query: 282 IEILGQFPQQEVNNFIPHNY-IEEAMSREA-IDDLYAP-LIMGCDIAGE 327 + + + D + G DIAGE Sbjct: 256 TQYRLLPILGSGYLLNDLQFSLLRGQHTWESSPDPAEGFYVAGLDIAGE 304 >gi|213406229|ref|XP_002173886.1| ATP-dependent 3' to 5' DNA helicase [Schizosaccharomyces japonicus yFS275] gi|212001933|gb|EEB07593.1| ATP-dependent 3' to 5' DNA helicase [Schizosaccharomyces japonicus yFS275] Length = 812 Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 52/163 (31%), Gaps = 13/163 (7%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 ++ G+GKT + A +M+ P +I +A ++ L + A + Sbjct: 148 NVLLALPTGLGKTFIAAVVMMNYYRWFPQSNIAFLAPTKPLLYQQMQACIH--------- 198 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 +S + +G L + + D + + +T +T + + P + + D Sbjct: 199 LTGIPESSIVELNGEVKPELRKQLFRDKRVFFVTPQTLNNDIQTEVCDPRL--FVCLVFD 256 Query: 199 EASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239 EA + + R +T+ Sbjct: 257 EAHRATGLHPYAQVLRSVLRYNTSFRVLALTATPGSNATQIQK 299 >gi|118467025|ref|YP_880745.1| gp2 protein [Mycobacterium avium 104] gi|118168312|gb|ABK69209.1| gp2 protein [Mycobacterium avium 104] Length = 510 Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 39/275 (14%), Positives = 76/275 (27%), Gaps = 28/275 (10%) Query: 79 KCAISAGRGIGKTTLNAWMM-LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + ++ GK+ + + +WL+S P +I + + + A + ++ P Sbjct: 67 RLIVTMPPRTGKSVQTSQVFPVWLLSRDPDAEVIVKSYGDALAEEHSAA-ARRLIAENPA 125 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 E+ + W M + T S D V A Sbjct: 126 VVGIELAADKQAVGRWRVAGHRGGMLAGGILSSTTGFGASVLLVDDPV------KGAQEA 179 Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257 D + + + T L P I+ + + P W+ I + Sbjct: 180 DSDAYRKRLYAEMRASLMTRLMPGASAIIVLTRWHPDDLAGSLLAEPGSRWRCVNIPAIS 239 Query: 258 VEGIDSGFHEGI-----------------ISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300 G+ + + S LG P + Sbjct: 240 TAGVPDALGRERSGVAMTSAVGRTAEQFREIKTEVGSRAWAAMYLGT-PSTPEGGLVKAA 298 Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEG-GDKTVV 334 +I+ A +++G D A G GD+T + Sbjct: 299 WIDT-WRLPAAPPGTVKIVVGVDPADSGQGDETGI 332 >gi|67480341|ref|XP_655520.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS] gi|56472666|gb|EAL50132.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS] Length = 1804 Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 24/192 (12%), Positives = 46/192 (23%), Gaps = 18/192 (9%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + A G GKT ML + P ++ IA + +K L S W L Sbjct: 1023 NVIVGAPTGSGKTVAAELCMLKIFRDTPDKKVVYIAPMKALVKEKL----SDWKDKLKTL 1078 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 ++ A + + + R ++++ + D Sbjct: 1079 GKNIVELTGDFTPDSAAIAKADIILTTPEKWDGITRLWTKKSYV-------QKVGLIILD 1131 Query: 199 EASGTPDIINKSILGFFTELNP-------NRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY 251 E + I T + + + + + Sbjct: 1132 EVHLLGEERGPVIEAIVTRTKQINKKLCIQTRICALTTAIANVDDMMNWIGVDKDSVFNF 1191 Query: 252 QIDTRTVEGIDS 263 R V I Sbjct: 1192 HSSLRPVPLIAH 1203 >gi|281416465|ref|YP_003347385.1| terminase large subunit [Enterococcus phage phiFL4A] gi|270209641|gb|ACZ64180.1| terminase large subunit [Enterococcus phage phiFL4A] Length = 418 Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 41/281 (14%), Positives = 79/281 (28%), Gaps = 34/281 (12%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + A RG KTT A + L+ P +II + ++T + E+ ++ + +F Sbjct: 48 LLAHRGSFKTTTLAIAIALLMVLFPNKNIIFLRKTDTDV-----VEIILQVAKVLSSKYF 102 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + +L+ L E + ID+ T + T + H V D+ Sbjct: 103 KTLVFALYGVEL-VLLKETTTEIDTNLKTSSRGTSQLLGMGIYASLTGKHADIVITDDIV 161 Query: 202 GTPDIINKS--------ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253 D ++++ N +I T + + Sbjct: 162 NIKDRVSRAEREKTKLQYQELQNVKNRGGRFINTGTPWHKEDAISKM-------PNVKKF 214 Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 D ID + + A E+ + + + + Sbjct: 215 DCYETGLIDKEQRKALQQAMTPSLFAANYELK---HIADSESLFTAPTYTDNTNLIYNGV 271 Query: 314 LYAPLIMGCDIAGEGGDKTVVVFR----RGNIIEHIFDWSA 350 + D A G D T G +I + W Sbjct: 272 AH------IDAAYGGDDSTAFTIFKEQKDGTLIGYGKKWQK 306 >gi|145708080|ref|YP_001165255.1| terminase [Ralstonia phage phiRSA1] gi|139003869|dbj|BAF52383.1| terminase [Ralstonia phage phiRSA1] Length = 593 Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 38/347 (10%), Positives = 80/347 (23%), Gaps = 35/347 (10%) Query: 39 GIKGKPLEHFSQPHRWQLEFMEA----VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN 94 G + KP + P Q + +EA + + + + + R IG T Sbjct: 124 GPRSKPERNAISPEE-QTQLLEAFRDSMFDYQRVWYEAGQVERIRNLLKS-RQIGATWYF 181 Query: 95 AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWY 154 A T G + I ++ S+ Q + + L + ++ Sbjct: 182 AREAFIDALTT-GRNQIFLSASKAQAHVFKQYIIQFAKDAAGIELKGDPMVLPNGATLYF 240 Query: 155 AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF----NDEASGTPDIINKS 210 ++ + + + + S Sbjct: 241 LGTNARTAQSYHGNLYFDEYFWVPRFQELRKVASGMAIHKHWRQTYFSTPSSLSHEAYPF 300 Query: 211 ILGFFTELNP-NRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI 269 G I + D W++ + G + F Sbjct: 301 WSGALFNRGKAKDKQIKL---DLSHAALRDGMRCADGQWRQIVTVEDALRGGCNLFDLDQ 357 Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY-----------APL 318 + + D ++ F + + P + M P+ Sbjct: 358 LRLEYSELD-FANLLMCVFID-DNASVFPLAMLMRGMVDSWEVWEDFRPFAPRPFGNRPV 415 Query: 319 IMGCDIAGEGGDKTVVVFRRGN-------IIEHIFDWSAKLIQETNQ 358 +G D G GGD +V + + +E Sbjct: 416 WVGYDPNGGGGDSAALVVVAPPLVPGGKFRVLERHQFRGIDYEEQAG 462 >gi|311746974|ref|ZP_07720759.1| putative helicase [Algoriphagus sp. PR1] gi|126578671|gb|EAZ82835.1| putative helicase [Algoriphagus sp. PR1] Length = 1050 Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 24/192 (12%), Positives = 58/192 (30%), Gaps = 29/192 (15%) Query: 45 LEHFS-QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS 103 L +F +P+ +Q E +E ++ V + ++ + A G GKT ++A+ Sbjct: 317 LGYFDLKPYTFQEEILEKLE------VERTVHGRYRNLLVAATGTGKTIISAFDFKRFYQ 370 Query: 104 TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163 P ++ +A+ + L+ + A L Sbjct: 371 KNPTAKLLFVAHRKEILQQAMGA-------------------FRGVLKDNNFGELWVDGE 411 Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223 +++ + + + + + DE + P Sbjct: 412 EPTQYRQVFASVQTLNNRLEGLELSAGYFDFIIVDEVHHIAANSY---RPILHKFTPQIL 468 Query: 224 WIMTSNTRRLNG 235 +T+ R++G Sbjct: 469 LGLTATPERMDG 480 >gi|320593001|gb|EFX05410.1| dead deah box DNA helicase [Grosmannia clavigera kw1407] Length = 1821 Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 25/262 (9%), Positives = 61/262 (23%), Gaps = 30/262 (11%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P RWQ ++ +D + A GKT ++ + M ++ + Sbjct: 767 PDRWQRRVLDTIDA------------RRSLFVVAPTSAGKTFISFYAMKQVLRESDEGVL 814 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHR----HWFEMQSLSLHPSGWYAELLEQSMGIDS 166 + +A ++ + +++ P+ W + ++L + Sbjct: 815 VYVAPTKALVNQVAAEIQARFSKAYPNGGGRSVWSIKTGDYTINNPTGCQVLVTVPQMLQ 874 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN---RF 223 + ++ + DE + + P Sbjct: 875 SLLLSPGSGRGADSKSSW----ARRIRWIIFDEVHSIGQSEEGVVWEQLLLMAPCPMIAL 930 Query: 224 WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283 N W D + +R + + + Sbjct: 931 SATIGNPNEFRAWLDGTEKAKGRDMEMIVHGSRYSDLRSYFWKPATLR------AETPFR 984 Query: 284 ILGQFPQQEVNNFIPHNYIEEA 305 G F IP ++ Sbjct: 985 FTG-FGPVPSRWPIPGLEVDGC 1005 >gi|319649444|ref|ZP_08003600.1| TerL protein [Bacillus sp. 2_A_57_CT2] gi|317398606|gb|EFV79288.1| TerL protein [Bacillus sp. 2_A_57_CT2] Length = 433 Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 29/255 (11%), Positives = 71/255 (27%), Gaps = 27/255 (10%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 GR K+++ + ++ +++C+ L +++ ++ + ML Sbjct: 27 IVAKGGRSSMKSSVISLKLVVDFLEDDIGNVVCLRKVGKYLSTSIYEQIKWAIYMLGVEG 86 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 F L G+D + + + MA++ +E Sbjct: 87 EFYFGKSPLIIRHKVTNTAFYFYGVDDPMKIKSAKIAKG------------YVMALWFEE 134 Query: 200 AS-GTPDIINKSILGFFTEL---NPNRFWIMTSNTRR-LNGWFYDIFNIPL--EDWKRYQ 252 A+ + F + N R W + + +D+ + Sbjct: 135 AAEFAGVEDIDIVEDTFIRQEIEGKEVKVYFSYNPPRNPYSWINEWLDTKAEDDDYFIHH 194 Query: 253 IDTRT--VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310 + I D D R G+ + ++ +A Sbjct: 195 STYLDDEKGFLSEQMIRKIEKYKENDEDYWRWMYAGEVIGLGDMVYNMDHF----HEIDA 250 Query: 311 IDDLYAPLIMGCDIA 325 + + +++ DIA Sbjct: 251 LPEDDDLILI--DIA 263 >gi|255038964|ref|YP_003089585.1| type III restriction protein res subunit [Dyadobacter fermentans DSM 18053] gi|254951720|gb|ACT96420.1| type III restriction protein res subunit [Dyadobacter fermentans DSM 18053] Length = 995 Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 61/212 (28%), Gaps = 21/212 (9%) Query: 28 FKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRG 87 ++F + +GKP+ QL + A+ H N + + G Sbjct: 21 PRSFRFAAQEYDAQGKPIGDRKGLRPPQLGALYAIGSHWTQNSSI-------ATVVMPTG 73 Query: 88 IGKTTLNAWMMLWLISTRPGMSIICIANSE----TQLKNTLWAEVSKWLSMLPHRHWFEM 143 GKT ML ++ P ++ S+ + L + + L++LP + Sbjct: 74 TGKTET----MLSALAAFPRGPMVVAVPSKALRNQTTRKFLTFGLLRKLTLLPEEVENPI 129 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 L G +L D + + + + DEA Sbjct: 130 VGLLSKQPGGENDLAIFE---DCNVVVSAMASLTGGKAKNLASKIANRSGVLIVDEAHHV 186 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 + F+ T+ R +G Sbjct: 187 AATSWSDLRSAFSGKYT---LQFTATPFREDG 215 >gi|89097884|ref|ZP_01170771.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911] gi|89087386|gb|EAR66500.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911] Length = 485 Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 26/209 (12%), Positives = 48/209 (22%), Gaps = 23/209 (11%) Query: 40 IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99 K F +P Q + A+ + G GKTT +L Sbjct: 14 EKAVSNMGFEEPTPIQAQ---AIPIGLSGKDMIGQAQT---------GTGKTTAFGIPLL 61 Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159 I G+ + +A + E+++ + R + Sbjct: 62 EKIDINEGIQGLVLAPTRELAVQVA-EELNRIGQVKGVRTLPIYGGQDISRQI------- 113 Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTE- 217 +++ D + I DEA + I +E Sbjct: 114 RALKKDRGPHIIAATPGRLIDHIERKTIRLNKIKLAVLDEADEMLNMGFIEDIERILSEV 173 Query: 218 -LNPNRFWIMTSNTRRLNGWFYDIFNIPL 245 + RR+ P Sbjct: 174 PEQRQTLLFSATMPRRIQSLAERFMTEPE 202 >gi|323487253|ref|ZP_08092556.1| hypothetical protein HMPREF9474_04307 [Clostridium symbiosum WAL-14163] gi|323399479|gb|EGA91874.1| hypothetical protein HMPREF9474_04307 [Clostridium symbiosum WAL-14163] Length = 550 Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 33/320 (10%), Positives = 75/320 (23%), Gaps = 64/320 (20%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFK-CAISAGRGIGKTTLNAWMMLW--LISTRPGM 108 WQ + + V+ + IF+ I GR GKT + ++ + + G Sbjct: 70 ETWQKSTVSIMF----GIVDEAGIRIFREFLIVIGRKNGKTLFASGIIAYCLFLDGEYGA 125 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 + C+A Q W +Q + + + + Sbjct: 126 KVFCVAPKLDQADLVYQ------------SFWQTIQKEPELQALIKRRKSDFYVESTNSS 173 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI----INKSILGFFTELNPNRFW 224 + + DE + P + + Sbjct: 174 VKKIAFNAKKSD--------GFNPHLTVCDEVASWPGDQGLKQYEVMKSALGARKQPIIL 225 Query: 225 IMTSNTRRLNGWFYD----------------------IFNIPLEDWKRYQIDTRTVEGID 262 ++++ G + + +E W ++ + Sbjct: 226 SISTSGYINEGIYDELVKRATRFLLGDSKEKRLAPFLYMIDDVEKWNDINELRKSNPNLG 285 Query: 263 -----SGFHEGIISRYGLDS--DVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY 315 E I G S + Q ++ +E+ + + Sbjct: 286 VSVSVDYLIEEIAIAEGSLSKKAEFMTKY-CNIKQNSTQAWLSAQDVEKCCGNPLRLEDF 344 Query: 316 AP--LIMGCDIAGEGGDKTV 333 + G D++ D T Sbjct: 345 RDSYCVGGIDLSQT-TDLTA 363 >gi|91791668|ref|YP_561319.1| type III restriction enzyme, res subunit [Shewanella denitrificans OS217] gi|91713670|gb|ABE53596.1| type III restriction enzyme, res subunit [Shewanella denitrificans OS217] Length = 1051 Score = 46.9 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 54/199 (27%), Gaps = 29/199 (14%) Query: 39 GIKGKPLEHFS-QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97 G HF +P Q E +E + +V + +K + A G GKT ++A+ Sbjct: 307 GYSDDSAFHFDIKPFAHQREILEQL------DVERTVHQRYKNLVVAATGTGKTLISAFD 360 Query: 98 MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 P + + +A+ + LK L + + + W AE Sbjct: 361 FARFYKQHPEANFLFVAHRQEILKQAL-------------SAYRGVLKNNQFGELWVAEH 407 Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217 S + DE G Sbjct: 408 KPNSYRHLFASVQSLNLQLLSLPLTVDFY------DYIVIDEVHHIAANSY---RGLLAH 458 Query: 218 LNPNRFWIMTSNTRRLNGW 236 +P +T+ R +G Sbjct: 459 FSPKILLGLTATPERHDGQ 477 >gi|11499835|ref|NP_071079.1| DEAD-box ATP dependent DNA helicase [Archaeoglobus fulgidus DSM 4304] gi|2648271|gb|AAB89003.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Archaeoglobus fulgidus DSM 4304] Length = 368 Score = 46.9 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 30/266 (11%), Positives = 55/266 (20%), Gaps = 38/266 (14%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR- 105 F +P Q E + V + G GKT A +L L+ R Sbjct: 26 GFEKPTEIQREIIPRFFEGEKDMVGQAQT-----------GSGKTAAFALPILDLVDERS 74 Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 + I I + E+ + P + Sbjct: 75 KDVQAIVITPTRELALQV-KDEIESLRGGKKVHVLAVYGGQPIFPQIE---------RLR 124 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELN--PNR 222 + DEA I Sbjct: 125 KGVQIVVGTPGRVIDHLERRTLSLEKVRFFVLDEADRMLDMGFIDDIERILRHAGAERRV 184 Query: 223 FWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI 282 + + D++ ++ ++ E + R + R Sbjct: 185 LMFSATMPPEVLRLARRYMR----DYEVVRVHSKITP-------ENVEHRCLKVNPEKRF 233 Query: 283 EILGQFPQQEVNNFIPHNYIEEAMSR 308 E L + + NNF + + Sbjct: 234 EHLCRIL--DENNFYGIVFCQTKKET 257 >gi|212545286|ref|XP_002152797.1| DEAD/DEAH box helicase, putative [Penicillium marneffei ATCC 18224] gi|210065766|gb|EEA19860.1| DEAD/DEAH box helicase, putative [Penicillium marneffei ATCC 18224] Length = 2022 Score = 46.9 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 19/155 (12%), Positives = 39/155 (25%), Gaps = 18/155 (11%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIF--------KCAISAGRGIGKTTLNAWMMLWLISTRP 106 Q +E + N +F + + G GKT M W RP Sbjct: 1125 QNPILEEIYGQRFQFFNPMQTQLFHTLYHTSANVLLGSPTGSGKTVACELAMWWAFRERP 1184 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 G ++ IA + ++ + + + + + E+ + + + + Sbjct: 1185 GSKVVYIAPMKALVRERVQDWRKRITTAMGLK-LVELTGDNTPDTRTIRDADIIITTPEK 1243 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 V DE Sbjct: 1244 WDGISRSWQTRGYV---------RQVSLVIIDEIH 1269 >gi|319647234|ref|ZP_08001456.1| YqaT protein [Bacillus sp. BT1B_CT2] gi|317390581|gb|EFV71386.1| YqaT protein [Bacillus sp. BT1B_CT2] Length = 431 Score = 46.9 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 37/275 (13%), Positives = 74/275 (26%), Gaps = 48/275 (17%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 F+ + G G K+ A ++ L +++ I +++ ++ ++ L Sbjct: 19 QKFQLLV-GGYGSSKSYHIALKLI-LKLLEEKRTVLVIREVYDTHRDSTFSLFEGIINDL 76 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 H + + + + I + + Sbjct: 77 EIDHIVRCMTSPM------------QVRFPNGSRIIFKGLDKPA-----KLKSINNISII 119 Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-------------- 241 + +E S K +LG I ++N + W Y F Sbjct: 120 WIEECSEVKYEGFKELLGRLRHPTLPLHMIFSTNPVGEDNWTYKHFFKDDLNNRFVLDDK 179 Query: 242 ------NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN 295 I L D + + + + D D+ RI G F V Sbjct: 180 ELYEKRTIVLNDTYYHHSTAEDNLFLPESYVRQLDELKEYDPDLYRIARKGHFGVNGVRV 239 Query: 296 F-----IPHNYIEEAMSREAIDDLYAPLIMGCDIA 325 F PH+ + +A+S +G D Sbjct: 240 FPQLEEWPHDEVMQAVSNIDCPIK----RVGMDFG 270 >gi|301022207|ref|ZP_07186122.1| conserved hypothetical protein [Escherichia coli MS 69-1] gi|300397620|gb|EFJ81158.1| conserved hypothetical protein [Escherichia coli MS 69-1] Length = 553 Score = 46.9 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 35/277 (12%), Positives = 61/277 (22%), Gaps = 29/277 (10%) Query: 7 TDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHC 66 LE L+ E V F F +KG + WQ + Sbjct: 29 YFSDLENSLYTF--DPEVVERFIAFSRV--CPHVKGAMRGSPIELEPWQQFAFACILGFK 84 Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 T + R K+T+ A + W + G I A ++ Sbjct: 85 VKATGRRKYTSAFIEV--PRKNAKSTVAAILANWFLVMENGQQDIYTAAVSRDQARIVFD 142 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 + + + L + +++ K T P Sbjct: 143 DARQMC--------LLSRPLRKRVNIQAHKVIHPKTNSLLKPLAAKAATIEGTNPS---- 190 Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246 DE PD S L P + + Sbjct: 191 -------LAIVDEYHLHPDNGVYSALELGMGARPEGLLFAITTSGSNVVSACKQHY---- 239 Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283 D+ +D + + +D I+ Sbjct: 240 DYCCQILDGEEMNESMFVLIYELDDESEVDDPAMWIK 276 >gi|118380585|ref|XP_001023456.1| Type III restriction enzyme, res subunit family protein [Tetrahymena thermophila] gi|89305223|gb|EAS03211.1| Type III restriction enzyme, res subunit family protein [Tetrahymena thermophila SB210] Length = 1858 Score = 46.9 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 41/123 (33%), Gaps = 11/123 (8%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 ++ G+GKT + A ++L P I +A + + + E ++ Sbjct: 153 NTLVALPTGLGKTFIAATVILNYYLWFPKGKIFFLAPTRPLVNQQM--ECLSQFELINKN 210 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 FEM P + + + + + T +T + + + V D Sbjct: 211 DIFEMTGNYPIPK-------RRDVYLRKRIFFCTPQTLENDLIE--QRYDGYNLSLVIFD 261 Query: 199 EAS 201 EA Sbjct: 262 EAH 264 >gi|51244372|ref|YP_064256.1| helicase [Desulfotalea psychrophila LSv54] gi|50875409|emb|CAG35249.1| related to predicted helicase [Desulfotalea psychrophila LSv54] Length = 1053 Score = 46.9 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 57/196 (29%), Gaps = 26/196 (13%) Query: 40 IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99 P P +QL +E++ +N F+ I A G GKT ++A Sbjct: 311 ENSTPFFAEITPRPFQLRILESLTAARQNNS-------FRNLIVAATGTGKTVISAL--- 360 Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159 I + + L + L++ Sbjct: 361 ------DYQRYIAGRGKQE-------PLLFVAHRKEILEQAMGCFRTVLRDQNFGELLVD 407 Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219 + + H + ++ + +RP + H V DEA + + + Sbjct: 408 HRVPTEWNHVFASIQSLNSKRP--WRDFSREHFRFVIIDEAHHGRAASYRCLFDETCI-D 464 Query: 220 PNRFWIMTSNTRRLNG 235 P +T+ R++G Sbjct: 465 PEILLGLTATPERMDG 480 >gi|54022003|ref|YP_116245.1| putative phage terminase [Nocardia farcinica IFM 10152] gi|54013511|dbj|BAD54881.1| putative phage terminase large subunit [Nocardia farcinica IFM 10152] Length = 582 Score = 46.9 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 49/324 (15%), Positives = 86/324 (26%), Gaps = 60/324 (18%) Query: 51 PHRWQLEFMEAVD---VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL--ISTR 105 P WQ+ ++ A VH + I + R GK+TL + ++L Sbjct: 87 PDSWQVAYILAPAFGWVHLDEDFGIYVRIIRTLYVELPRKNGKSTLAGGIGIYLTAADGE 146 Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 G +I A Q ++A + P +L H + + A+++ Sbjct: 147 EGAQVIAAATRLDQA-QFVFAPIKLLAEKSP--------ALRKHVTPYKAKIVHNR---- 193 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPNRFW 224 +Y + + H DE + + ++I Sbjct: 194 -------TASYFQPVANAGDAQHGADLHGGIVDELHLHKTNELVEAIETGTGSRTQPLIV 246 Query: 225 IMTS-------NT-RRLNGWFYDIFNIPLEDWKRYQIDT---RTVEGIDSGFHEGII--- 270 +T+ R G + L+D Y + EG D E Sbjct: 247 FITTADDSRKETPYDRKRGLVEQLARGVLKDATTYGVIWAADENAEGFDPYSEEAQRAAN 306 Query: 271 -------------------SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311 + D R LG +Q V + A + Sbjct: 307 PGFGISPTRAFLRQAAVKAQQSPADDASYRRLHLGIRTKQAVKYLDIEAWDRNASIVDEE 366 Query: 312 DDLYAPLIMGCDIAGEGGDKTVVV 335 G D+A D T + Sbjct: 367 RLRGRACYGGLDLAAT-SDLTALA 389 >gi|270055225|gb|ACZ58718.1| hypothetical protein SAP029A_017 [Staphylococcus aureus] Length = 740 Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 40/263 (15%), Positives = 81/263 (30%), Gaps = 10/263 (3%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTT-LNAWMMLWLISTRPGMSII 111 +Q + ++ + + + + I A G GKT L +W+ ++IST + + Sbjct: 6 EFQEKMVDKLLRF-----TAPDYKVNELLIKAPTGSGKTICLLSWINDYIISTHDDVVFV 60 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 +L+ + + ++ + + + + K Sbjct: 61 WFTPGAGELEEQSKDKAKGFTNIKSQSVDEALNQGFEKETVTFINYERVTGK-KKKAMMT 119 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 + E H + V DEA + I+ F R N Sbjct: 120 DSEKDNLEDKINEAFRKGYHFILVI-DEAHRNDTKKARDIISKFKASKIVRVSATIENPN 178 Query: 232 RLNG-WFYDIFNIPLEDWKRYQIDTRTVEGIDSG-FHEGIISRYGLDSDVARIEILGQFP 289 + FY+I + + EGID E +++ R EIL + Sbjct: 179 NPDKIEFYEIDENDVINSGLITKSVIVNEGIDIDINVENEFDLLFNAAEIKRKEILNAYQ 238 Query: 290 QQEVNNFIPHNYIEEAMSREAID 312 + +NN P ++ + D Sbjct: 239 DKNINNINPLVLVQLPDKTDNED 261 >gi|260557981|ref|ZP_05830193.1| phage terminase large subunit [Acinetobacter baumannii ATCC 19606] gi|260408491|gb|EEX01797.1| phage terminase large subunit [Acinetobacter baumannii ATCC 19606] Length = 529 Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 11/82 (13%) Query: 269 IISRYGLDSDVARIEILGQF---PQQEVNNFIPHNYIEEAMSREAIDDLYAPLI------ 319 + + L + + G F + + IP ++E A +R + L Sbjct: 274 MSTLQALPEPLRSQMLYGDFGAGIEDDPWQVIPTEWVEAAQARWKPLEDMRILHRGDFKM 333 Query: 320 --MGCDIAGEGGDKTVVVFRRG 339 G D+A GGD T+ R G Sbjct: 334 DSYGLDVARGGGDNTIGFARYG 355 >gi|296123845|ref|YP_003631623.1| Phage terminase-like protein protein large subunit-like protein [Planctomyces limnophilus DSM 3776] gi|296016185|gb|ADG69424.1| Phage terminase-like protein protein large subunit-like protein [Planctomyces limnophilus DSM 3776] Length = 495 Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 51/372 (13%), Positives = 95/372 (25%), Gaps = 56/372 (15%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 M RL + D+ + L L W L S+P Q + Sbjct: 1 MVRLSAADRTRQATLESWQRADFAALDPA--------WRK----LAFGSRPSLSQADATT 48 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + H P RG KTT A W+++ A ++ + Sbjct: 49 SNAPHVLRRAYLERP----------RGHSKTTDIALSCAWILAFAQEPVTGIAAAADREQ 98 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 L +++ + + P H G E+ + ++ S + Sbjct: 99 AQLLLQAIARLVRLNP------------HLLGHLQVQQERVIHTHTRSRLDV---ISSDV 143 Query: 181 PDTFVGPHNTHGMAVFNDEASGTP-DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239 ++ V DE + S++ + P+ + SN W + Sbjct: 144 ASSWGLL----PDFVICDELCHWTKPDLWHSLVSA-SAKKPHTLLAVMSNAGVGRTWQWQ 198 Query: 240 IFNIPL--EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV-----ARIEILGQFPQQE 292 + +W + I + G F + Sbjct: 199 VREAARTSPEWYFSSLHGPQASWITPETLAEQQRLLPATVFARLWLNQWQQAEGDFVTLD 258 Query: 293 VNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352 I+ +++R+ + D A + D TV V I D + Sbjct: 259 E----ARACIDPSLARKEHGSPGIHYVAAIDYAEK-HDWTVAVILHAEGDRLIVD-RMDV 312 Query: 353 IQETNQEGCPVG 364 PV Sbjct: 313 AIPQPGRPTPVA 324 >gi|316934039|ref|YP_004109021.1| UvrD/REP helicase [Rhodopseudomonas palustris DX-1] gi|315601753|gb|ADU44288.1| UvrD/REP helicase [Rhodopseudomonas palustris DX-1] Length = 687 Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 33/274 (12%), Positives = 73/274 (26%), Gaps = 18/274 (6%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTR-PGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + AG G GKT A + L+ I+ + S V + + Sbjct: 31 LLVIAGAGSGKTNTLAHRVAHLVVGGADPYRILLMTFSRRAAAEMT-RRVERIARKVLGD 89 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + ++ + T + + H + Sbjct: 90 RASALSGGLHWAGTFHGIGARLLRDYAERIGLDPGFTIHDREDSADLMNLVRHDLGFSKT 149 Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 EA SI ++ +N GW E + + Sbjct: 150 EARFPAKATCLSIYSRCVNAGQPLDVVLGANYPWCAGW-------AAELKQLFAAYVEAK 202 Query: 259 EGIDSGFHEGIISRYG--LDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA 316 + + ++ ++ + ++ EI G+F V+ + N ++ + D Sbjct: 203 QRHNVLDYDDLLLYWAQVMEEPAFAQEIGGRFDHVLVDEYQDTNALQARVLLALKPDGAG 262 Query: 317 PLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSA 350 ++ G D + R + +I D+ Sbjct: 263 LTVV-------GDDAQAIYSFRAATVRNILDFPK 289 >gi|15801322|ref|NP_287339.1| putative terminase of prophage CP-933C [Escherichia coli O157:H7 EDL933] gi|12514776|gb|AAG55951.1|AE005328_9 putative terminase of prophage CP-933C [Escherichia coli O157:H7 str. EDL933] Length = 509 Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 48/232 (20%), Gaps = 25/232 (10%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 WQ + T + R K+T A + W + G I Sbjct: 26 EPWQQFAFACILGFKVKATGRRKYTSAFIEV--PRKNAKSTTAAILANWFLIMENGQQDI 83 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A ++ + + + L + +++ K Sbjct: 84 YTAAVSRDQARIVFDDARQMC--------LLSRPLRRRVNIQAHKVIHPKSNSLLKPLAA 135 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 T P DE PD S L P + + Sbjct: 136 KAATIEGTNPS-----------LAIVDEYHLHPDNGVYSALELGMGARPEGLLFAITTSG 184 Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283 D+ +D V + +D I+ Sbjct: 185 SNVVSACKQHY----DYCCQILDGEEVNESMFVLIYELDDESEVDDPAMWIK 232 >gi|288959320|ref|YP_003449661.1| hypothetical protein AZL_024790 [Azospirillum sp. B510] gi|288911628|dbj|BAI73117.1| hypothetical protein AZL_024790 [Azospirillum sp. B510] Length = 504 Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 18/139 (12%), Positives = 38/139 (27%), Gaps = 6/139 (4%) Query: 42 GKPLEHFSQPHRWQLEF--MEAVDVHCHS---NVNNSNPTIFKCAISAGRGIGKTTLNAW 96 + + F+ R + + H + + + A RG GK+TL Sbjct: 2 DREDDSFTGFVRGWNDMVELRTPAHHARMAGWLERHMAGDNRRMLLMAFRGSGKSTLVGL 61 Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156 WL+ P ++ +A + V + L P + + Sbjct: 62 FAAWLLRRDPNRRLLVLAADMRLAMKMV-RNVKRILERHPGCGDLKPPARERDQWAADRF 120 Query: 157 LLEQSMGIDSKHYTITCRT 175 + + M + Sbjct: 121 TVLRPMELRDPSMAAAGIG 139 >gi|299132403|ref|ZP_07025598.1| type III restriction protein res subunit [Afipia sp. 1NLS2] gi|298592540|gb|EFI52740.1| type III restriction protein res subunit [Afipia sp. 1NLS2] Length = 1097 Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 55/219 (25%), Gaps = 30/219 (13%) Query: 38 WGIKGKPLEHFSQPHR----WQLEFMEAVDVHCHSNVNNSNPTIFKC-AISA----GR-- 86 W G P + W+ F AV+ + P I AI+A GR Sbjct: 100 WDRLGALETWADSPEKVLESWRNRFTFAVEDLDQGHPGLRLPQIGALHAIAAHFSVGREF 159 Query: 87 ---------GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 G GKT ML + R I+ +A S L+N + + S + Sbjct: 160 EPATVVLPTGTGKTET----MLADLVYRRERKILVLAPSLI-LRNQIGVKFSTLGVLPAA 214 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN--THGMAV 195 + + T + H + Sbjct: 215 GAIPVELARPFVAKITKGISTVGHAEAIVNASNVIIATPDILKASAPDALHRLLEGCSIL 274 Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 DEA + F + T+ R + Sbjct: 275 VVDEAHHITAATWSEVRDRFA---AKKIIQFTATPFRRD 310 >gi|315634882|ref|ZP_07890164.1| phage D3 terminase family protein [Aggregatibacter segnis ATCC 33393] gi|315476434|gb|EFU67184.1| phage D3 terminase family protein [Aggregatibacter segnis ATCC 33393] Length = 542 Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 30/279 (10%), Positives = 60/279 (21%), Gaps = 35/279 (12%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ + +N ++ R K+T+ A + W + G I Sbjct: 58 DWQTFLFANLLGFKRTNTGLRKYRSAYIQVA--RKNAKSTVAAVLANWFLLMESGQQDIY 115 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 A ++ + + + P L + +L+ + Sbjct: 116 TAAVSRDQARIVFDDARQMCLLSP--------PLRKRLNIQQHKLINPKSNSLMRPLAAK 167 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232 T P DE D S L P + Sbjct: 168 SSTIEGTNPS-----------LAIVDEYHLHTDNSVYSALELGQGARPEGLLFAITTAGS 216 Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI-----LGQ 287 D+ ++ + +D+ ++ Sbjct: 217 NVISACKQHY----DYCAQILEGNEQNDSLFVLIFELDEESEIDNPENWVKANPNIGKSI 272 Query: 288 FPQQEVNNF-----IPHNYIEEAMSREAIDDLYAPLIMG 321 N IP ++E R + +G Sbjct: 273 PYLDFENTIKKARGIPSEWVEMLTKRFNVWCQGTTPWLG 311 >gi|228928749|ref|ZP_04091784.1| Terminase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228830904|gb|EEM76506.1| Terminase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 574 Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 55/189 (29%), Gaps = 26/189 (13%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL--ISTRPGMS 109 WQ F+ A H ++ R GK+TL++ + L+L G Sbjct: 108 ELWQQAFLAATFGFVHKIDGTRKYREAFLVVA--RKNGKSTLSSGICLYLQVADGEGGSE 165 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 + +A E Q K +W+E + + P +LS EL K Sbjct: 166 VYAVATKEQQAK-IVWSESKRMVKKSP--------ALSKRIKTLVKELTAGFNDSVLKPV 216 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK--SILGFFTELNPNRFWIMT 227 T H DE D + G P I T Sbjct: 217 GSDSDTLDGLN------VHGAS-----LDEIHAWKDKNLYDVIVDGTSAREQPLILMITT 265 Query: 228 SNTRRLNGW 236 + T R + + Sbjct: 266 AGTVRESVY 274 >gi|328857391|gb|EGG06508.1| hypothetical protein MELLADRAFT_36161 [Melampsora larici-populina 98AG31] Length = 824 Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 45/147 (30%), Gaps = 7/147 (4%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA-EVSKWLSMLPHRHWFEMQS 145 G+GKT ++L G + IA + + W E+ K+ L W Sbjct: 237 GMGKTIQTISLILSDRKAGDGKQTLVIAPT---VAIIQWRNEIEKFTKGLKVNVWHGGNR 293 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYS--EERPDTFVGPHNTHGMAVFNDEASGT 203 + + +++ S + + Y E H+ H V DEA Sbjct: 294 STDKKTMKSYDIVLTSYAVLESSFRRQNSGYRKFGELRKEASLLHSIHWHRVILDEAHNI 353 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNT 230 D + G F W ++ Sbjct: 354 KDRSCNTAKGAFELQ-ATFKWCLSGTP 379 >gi|270010010|gb|EFA06458.1| hypothetical protein TcasGA2_TC009341 [Tribolium castaneum] Length = 1313 Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 22/238 (9%), Positives = 61/238 (25%), Gaps = 15/238 (6%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 +S G+GKT + A +M P +I +A + +K + +++ Sbjct: 57 NTLVSLPTGLGKTFIAAVVMYNFYRWYPHDKVIFMAPTRPLVKQQM----DACYNIMAIP 112 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + E+ + + + + D Sbjct: 113 QEVTAELTGTKIQQSRTEIWQ-------NKRVFFITPQVLQNDLNIIVELGPKIKCLVFD 165 Query: 199 EASGTPDIIN--KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256 EA + + E R +++ + D+ + + Sbjct: 166 EAHRAKGNHAYCEVVRKLLPENKLFRVLALSATPGNSSKDVLDVMRNL--LIAHLEFRSE 223 Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314 + E + + +I ++ Q V+ + ++ + + Sbjct: 224 ESPDVKPYVFERALETVVVPLGEKLQQIRDKYIQGNVSIIQIMDDLQAYLGPDPEVQP 281 >gi|20094271|ref|NP_614118.1| helicase [Methanopyrus kandleri AV19] gi|19887311|gb|AAM02048.1| Archaea-specific Superfamily II helicase [Methanopyrus kandleri AV19] Length = 818 Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 35/293 (11%), Positives = 60/293 (20%), Gaps = 27/293 (9%) Query: 43 KPLEHFSQPHRWQLEFME----AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98 PL P + + V + + G GKT L A + Sbjct: 188 LPLTELDIPEELRRVLERMGYQELTPVQTKCVERGLLEGRNLLVVSPTGSGKT-LVAELA 246 Query: 99 LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 R G ++ + + K+ L ++ + L Sbjct: 247 GLTEVLREGRKMVYLVPLVALANQKHREFMEKYGRPLGIGVRLQVGAARLKEFSGPERGP 306 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG----- 213 D+ T + V P V DE D + G Sbjct: 307 SP---RDADIIVGTYEGFDLLLRTGAVDP--DDIGVVVIDEVHTLADERGPRLDGLVCRL 361 Query: 214 -FFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISR 272 T N L + + + + + Sbjct: 362 KTLTGAQLLGLSATVGNPEELAEYLDAEPIVHNRRPVPLEYHLVINQDRRQKWDRIAR-- 419 Query: 273 YGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325 + E ++ I Y R A G D+A Sbjct: 420 ------LVESEWETEYSTGYRGQTIVFTYSRRNTHRLADLLNE---RTGLDVA 463 >gi|229123217|ref|ZP_04252422.1| Terminase [Bacillus cereus 95/8201] gi|228660232|gb|EEL15867.1| Terminase [Bacillus cereus 95/8201] Length = 574 Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 55/189 (29%), Gaps = 26/189 (13%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL--ISTRPGMS 109 WQ F+ A H ++ R GK+TL++ + L+L G Sbjct: 108 ELWQQAFLAATFGFVHKIDGTRKYREAFLVVA--RKNGKSTLSSGICLYLQVADGEGGSE 165 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 + +A E Q K +W+E + + P +LS EL K Sbjct: 166 VYAVATKEQQAK-IVWSESKRMVKKSP--------ALSKRIKTLVKELTAGFNDSVLKPV 216 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK--SILGFFTELNPNRFWIMT 227 T H DE D + G P I T Sbjct: 217 GSDSDTLDGLN------VHGAS-----LDEIHAWKDKNLYDVIVDGTSAREQPLILMITT 265 Query: 228 SNTRRLNGW 236 + T R + + Sbjct: 266 AGTVRESVY 274 >gi|194450112|ref|YP_002047236.1| hypothetical protein SeHA_C3493 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194408416|gb|ACF68635.1| putative conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] Length = 591 Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 42/351 (11%), Positives = 78/351 (22%), Gaps = 76/351 (21%) Query: 38 WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97 + W E + H N+ I R IG T A+ Sbjct: 126 YKKNDISSLTQEDFDTWAEEHLFEYQKHLRRNIGQLVRN-----ILKSRQIGATWYFAFE 180 Query: 98 MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 I A+ AEV + + +F + Sbjct: 181 AFENAVMTGDPQIFLSASKAQ-------AEVFRSYIVNIAEQYFGITLTGNPIRLSNGAE 233 Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFF 215 L + T ++YS ++ DE P+ +N+ Sbjct: 234 LRFLSTNKN-----TAQSYSGH---------------LYCDEYFWVPNFTKLNEVASAMA 273 Query: 216 TELNPNRFWIMTSNTRRLNG-----WFYDIFNIPLEDWKRYQIDTRT--------VEGID 262 T S W D + + + T Sbjct: 274 THDKWRT--TYFSTPSAKTHQAYPFWTGDEWKQGSKKRTAIKFPTFDELRDGGRVCPDGQ 331 Query: 263 SGFHEGIISRYGLDSDVARIE--------------ILGQFPQQEVNNFIPHNYIEEA--- 305 + + ++A IE + F ++ + +E Sbjct: 332 WRYVITMEDAIAGGFNLANIEKLRNRYNTATFNMLYMCVFVD-SKDSVFSFSDLEACGVE 390 Query: 306 --MSREAIDDLYAPL----IMG-CDIAGEGGDKTVVVFRRGNIIEHIFDWS 349 ++ D P + G D A G D + V + + + Sbjct: 391 VDTWQDHNPDAARPFGDRPVWGGFDPARSG-DLSCFVIV-APPMFAVEKFR 439 >gi|291563675|emb|CBL42491.1| phage uncharacterized protein (putative large terminase), C-terminal domain [butyrate-producing bacterium SS3/4] Length = 544 Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 48/347 (13%), Positives = 101/347 (29%), Gaps = 39/347 (11%) Query: 9 QKLEQELHEMLMHAECVL------SFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAV 62 + ++EL + M + VL F+++++ W + P + F P R E + Sbjct: 58 SETDKELRSLFMLHKKVLLAAAPFDFESYLLYV-EWERE--PDKKFYVPRR------EVM 108 Query: 63 DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN 122 + + + + IS G GK+TL + + W++ P + A+S L Sbjct: 109 HPVVQAMQDLIDDRLDLLTISMPPGTGKSTLGIFFLSWVMGRFPDSQSLASAHSG-MLTR 167 Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182 + + V + ++ + + + + E ++ T S Sbjct: 168 SFYDGVYQIITDSEYLWADVFPGVKMAATNSKEETIDLHKKHRFSTLTCRAINASLTGAT 227 Query: 183 TFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPN-RFWIMTSNTRRLNGWFYD 239 + +EA D + + I + ++ Sbjct: 228 RCDKILYADDLCSGIEEAMSKERLDKLWSAYTNDLKSRKKEGAKEIHIATRWSVHDVIGR 287 Query: 240 IFNIPLEDWKRY-------------QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 + N D + + G + E + + S A Sbjct: 288 LENQYGGDSRAKFIVLPALDADGESNFNYTYGVGFSRHYFEDMRNNLDEASFKALFMNQ- 346 Query: 287 QFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMG-CDIAGEGGDKT 332 P + + + A D A I+G CD +G D Sbjct: 347 --PIEREGLLYDVDELRRYFELPAE-DPDA--IIGICDTKDKGSDYA 388 >gi|224006195|ref|XP_002292058.1| helicase [Thalassiosira pseudonana CCMP1335] gi|220972577|gb|EED90909.1| helicase [Thalassiosira pseudonana CCMP1335] Length = 1581 Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 19/187 (10%) Query: 43 KPLEHFSQPHRWQL-----EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97 P+ +P QL + + + +S+ + A G GKTT+ Sbjct: 909 LPVRSLDEPRYEQLYANRFDVFNPIQTQLFHILYHSDVP---VLLGAPTGSGKTTVAELA 965 Query: 98 MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML--PHRHWFEMQSLSLHPSGWYA 155 +L + + P + IA ++ + L +W L P +W ++ A Sbjct: 966 LLRMKTQTPNGKCVYIAPLKSLARERL----KEWSKRLGAPPLNWKVLELSGDTSHDSRA 1021 Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN-----THGMAVFNDEASGTPDIINKS 210 + + + + R + D N + DE + Sbjct: 1022 LNNSDVLICTPEKWDLISRGWRGVSGDFVSNASNGKKFVKEVGLLIIDEIHLLGEERGAV 1081 Query: 211 ILGFFTE 217 + + Sbjct: 1082 LEAIISR 1088 >gi|164429395|ref|XP_957041.2| hypothetical protein NCU04472 [Neurospora crassa OR74A] gi|157073461|gb|EAA27805.2| predicted protein [Neurospora crassa OR74A] Length = 1535 Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 32/289 (11%), Positives = 77/289 (26%), Gaps = 37/289 (12%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +P WQ + ++A+D + + A GKT ++ + M ++ Sbjct: 663 EPDAWQRKVLDAIDENKS------------LLVIAPTSAGKTFISFYAMRKVLEANNDDV 710 Query: 110 IICIANSETQLKNT---LWAEVSKWLSM-------LPHRHWFEMQSLSLHPSGWYAELLE 159 ++ IA ++ + + A SK L + L ++ + Sbjct: 711 LVYIAPTKALVNQIAAEIQARFSKQYGQEARSRDTLNDASLEPRDCIVLWKHMTKHQIGQ 770 Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219 + + + + D P+ + Sbjct: 771 YQVPTSLDPKKMLPSLVKKSDVTKWESALKDVLADWMLD-----PNSPFDELRNDLRGER 825 Query: 220 PNRFWIMTS-NTRRLN-----GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRY 273 + N R+ Y+ +K++ + + S Sbjct: 826 SHGALPAIIFNYDRVGCETVLRELYETLKSAEAAYKQHDSKWLKKLAGFEEWKKRRESAK 885 Query: 274 GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR----EAIDDLYAPL 318 D+ + + + G + + + +A +R D APL Sbjct: 886 TKDTKMKQTKKTGLRNEDDDGAMSKGDRARDAANRELSVWDSFDPEAPL 934 >gi|325660662|ref|ZP_08149293.1| hypothetical protein HMPREF0490_00024 [Lachnospiraceae bacterium 4_1_37FAA] gi|325473071|gb|EGC76278.1| hypothetical protein HMPREF0490_00024 [Lachnospiraceae bacterium 4_1_37FAA] Length = 777 Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 25/180 (13%), Positives = 46/180 (25%), Gaps = 16/180 (8%) Query: 38 WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNS---NPTIFKCAISAGRGIGKTTLN 94 W + + +E R + + + + I + + G GKT Sbjct: 221 WEVLSEKVEEKCGEFRERKDPLSKLRCDISERCKCYAERETEICRMIV--PTGGGKTISA 278 Query: 95 AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWY 154 + I IA + L +W ++ + E S + Sbjct: 279 LRFAIHYCKKHGKERIFYIAPF----RTILEQNCEEWKRIVGEEYVLEHHSDMIASFKTE 334 Query: 155 AELLEQSMGIDSKHYTITCRT----YSEERPDTFVGPHNTHGMA---VFNDEASGTPDII 207 E+ E + D I T + D H + + DE P Sbjct: 335 EEMAEYELRADKWDMPIIATTLVQFMNTFFSDRMDSVRRMHRLCNSVIIIDEVQSIPAEC 394 >gi|119716507|ref|YP_923472.1| type III restriction enzyme, res subunit [Nocardioides sp. JS614] gi|119537168|gb|ABL81785.1| type III restriction enzyme, res subunit [Nocardioides sp. JS614] Length = 558 Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 44/364 (12%), Positives = 93/364 (25%), Gaps = 53/364 (14%) Query: 38 WGIKGKPLEHFSQP---------HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGI 88 W + P +QLE E + + + G+ Sbjct: 117 WAGPTLEAIYAKMPARVPSKYELRPYQLEAAERIQQDLEDTN--------RALLVLATGL 168 Query: 89 GKTTLNAWMMLWLISTRPGMSIICIANSE---TQLKNTLWAEVSKWLSMLPHRHWFEMQ- 144 GKT + ++ + + P I+ +A+ + QL+ LW + K + Sbjct: 169 GKTVVGGEVIRRHLESHPDARILVVAHMKELVEQLEKALWRHLDKSVPTQVLTGDTRPTS 228 Query: 145 ------SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN- 197 + G S+ + + + + + D A Sbjct: 229 FEGVTVATIDSVLGLVRTDWRPSLIMIDETHHVGETGMFAQLLDECQDARQFGVTATPWR 288 Query: 198 -DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI--D 254 D+ T S E + + ++ +D E + Sbjct: 289 GDKFDITSRFGQPSYSLGIAEGMADGYLAQVDYRMYVDNLDWDFVRHASEHGYSIKELNK 348 Query: 255 TRTVEGIDSGFHEGIISRYGL--DSDVA-------RIEILGQFPQQEVNNFIPHNYIEEA 305 + D + + D E + ++ +Y+ Sbjct: 349 ALFLPQRDEEIVDEFRQAWREIRDPRAIVFCQTIEHAERMATLLAGADQSWRRASYLHSG 408 Query: 306 MSREAIDD-------LYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF-DWSAKLIQETN 357 +SR+ P+I D+ EG D N+I + S ++ + Sbjct: 409 LSRQQRQILLNAFRLGRVPIITCVDVFNEGVD-----VPDVNLIAFLRVTHSRRIFVQQL 463 Query: 358 QEGC 361 G Sbjct: 464 GRGL 467 >gi|323190958|gb|EFZ76225.1| terminase, ATPase subunit [Escherichia coli RN587/1] Length = 591 Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 36/330 (10%), Positives = 77/330 (23%), Gaps = 56/330 (16%) Query: 49 SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108 W E + H +N+ I R IG T A+ Sbjct: 137 EDFDAWAEEHLFEYQKHLRNNIGQLVRN-----ILKSRQIGATWYFAFEAFENAVMTGDP 191 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 I A+ AEV + + +F + + S G + + Sbjct: 192 QIFLSASKAQ-------AEVFRSYIVNIAEQYFGITLT--------GNPIRLSNGAELRF 236 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 + T + + +E + +K +F+ + Sbjct: 237 LSTNKNTAQSYSGHLYCDEYFWVPNFAKLNEVASAMATHDKWRTTYFSTPSAKTHQAY-- 294 Query: 229 NTRRLNGWFYDIFNIPL-----EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283 G + + + + R + + ++A IE Sbjct: 295 --PFWTGDEWKQGSKKRAAIKFPSFNEMRDGGRLCPDGQWRYVITMEDAIAGGFNLANIE 352 Query: 284 --------------ILGQFPQQEVNNFIPHNYIEEA-----MSREAIDDLYAPL----IM 320 + F ++ + +E ++ D P + Sbjct: 353 KLRNRYNDATFNMLYMCVFVD-SKDSVFSFSDLEACGVEIDTWQDHNPDAARPFGDRPVW 411 Query: 321 G-CDIAGEGGDKTVVVFRRGNIIEHIFDWS 349 G D A G D + + + + Sbjct: 412 GGFDPARSG-DLSCF-VIIAPPMLAVEKFR 439 >gi|323477799|gb|ADX83037.1| ATPase of unknown function [Sulfolobus islandicus HVE10/4] Length = 726 Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 19/137 (13%), Positives = 38/137 (27%), Gaps = 21/137 (15%) Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 P ++A RG GK+ + +L++ +I+ + + + + V K L Sbjct: 213 PGKRVLVVTAARGRGKSASIGLFLSYLMTEEKFGNILVTSPTYYSSQEI-FNFVIKGLDA 271 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 L ++ S + + N G Sbjct: 272 LNVKYKLTTSKD--------------------GKIMKITTGESRVKWVSPDLARNEEGDL 311 Query: 195 VFNDEASGTPDIINKSI 211 + DEA+ I Sbjct: 312 IVVDEAAAIGMEFLDYI 328 >gi|284446123|gb|ADB87625.1| conserved hypothetical protein [Sulfolobus islandicus L.D.8.5] Length = 742 Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 19/137 (13%), Positives = 38/137 (27%), Gaps = 21/137 (15%) Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 P ++A RG GK+ + +L++ +I+ + + + + V K L Sbjct: 229 PGKRVLVVTAARGRGKSASIGLFLSYLMTEEKFGNILVTSPTYYSSQEI-FNFVIKGLDA 287 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 L ++ S + + N G Sbjct: 288 LNVKYKLTTSKD--------------------GKIMKITTGESRVKWVSPDLARNEEGDL 327 Query: 195 VFNDEASGTPDIINKSI 211 + DEA+ I Sbjct: 328 IVVDEAAAIGMEFLDYI 344 >gi|238620206|ref|YP_002915032.1| protein of unknown function DUF699 ATPase putative [Sulfolobus islandicus M.16.4] gi|238381276|gb|ACR42364.1| protein of unknown function DUF699 ATPase putative [Sulfolobus islandicus M.16.4] Length = 742 Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 19/137 (13%), Positives = 38/137 (27%), Gaps = 21/137 (15%) Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 P ++A RG GK+ + +L++ +I+ + + + + V K L Sbjct: 229 PGKRVLVVTAARGRGKSASIGLFLSYLMTEEKFGNILVTSPTYYSSQEI-FNFVIKGLDA 287 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 L ++ S + + N G Sbjct: 288 LNVKYKLTTSKD--------------------GKIMKITTGESRVKWVSPDLARNEEGDL 327 Query: 195 VFNDEASGTPDIINKSI 211 + DEA+ I Sbjct: 328 IVVDEAAAIGMEFLDYI 344 >gi|229581726|ref|YP_002840125.1| protein of unknown function DUF699 ATPase putative [Sulfolobus islandicus Y.N.15.51] gi|228012442|gb|ACP48203.1| protein of unknown function DUF699 ATPase putative [Sulfolobus islandicus Y.N.15.51] Length = 742 Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 19/137 (13%), Positives = 38/137 (27%), Gaps = 21/137 (15%) Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 P ++A RG GK+ + +L++ +I+ + + + + V K L Sbjct: 229 PGKRVLVVTAARGRGKSASIGLFLSYLMTEEKFGNILVTSPTYYSSQEI-FNFVIKGLDA 287 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 L ++ S + + N G Sbjct: 288 LNVKYKLTTSKD--------------------GKIMKITTGESRVKWVSPDLARNEEGDL 327 Query: 195 VFNDEASGTPDIINKSI 211 + DEA+ I Sbjct: 328 IVVDEAAAIGMEFLDYI 344 >gi|229579609|ref|YP_002838008.1| protein of unknown function DUF699 ATPase [Sulfolobus islandicus Y.G.57.14] gi|317412141|sp|C3N792|TMCA_SULIY RecName: Full=Putative tRNA(Met) cytidine acetyltransferase gi|228010324|gb|ACP46086.1| protein of unknown function DUF699 ATPase putative [Sulfolobus islandicus Y.G.57.14] Length = 743 Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 19/137 (13%), Positives = 38/137 (27%), Gaps = 21/137 (15%) Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 P ++A RG GK+ + +L++ +I+ + + + + V K L Sbjct: 229 PGKRVLVVTAARGRGKSASIGLFLSYLMTEEKFGNILVTSPTYYSSQEI-FNFVIKGLDA 287 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 L ++ S + + N G Sbjct: 288 LNVKYKLTTSKD--------------------GKIMKITTGESRVKWVSPDLARNEEGDL 327 Query: 195 VFNDEASGTPDIINKSI 211 + DEA+ I Sbjct: 328 IVVDEAAAIGMEFLDYI 344 >gi|227830703|ref|YP_002832483.1| protein of unknown function DUF699 ATPase [Sulfolobus islandicus L.S.2.15] gi|227457151|gb|ACP35838.1| protein of unknown function DUF699 ATPase putative [Sulfolobus islandicus L.S.2.15] Length = 742 Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 19/137 (13%), Positives = 38/137 (27%), Gaps = 21/137 (15%) Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 P ++A RG GK+ + +L++ +I+ + + + + V K L Sbjct: 229 PGKRVLVVTAARGRGKSASIGLFLSYLMTEEKFGNILVTSPTYYSSQEI-FNFVIKGLDA 287 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 L ++ S + + N G Sbjct: 288 LNVKYKLTTSKD--------------------GKIMKITTGESRVKWVSPDLARNEEGDL 327 Query: 195 VFNDEASGTPDIINKSI 211 + DEA+ I Sbjct: 328 IVVDEAAAIGMEFLDYI 344 >gi|37676514|ref|NP_936910.1| hypothetical protein VVA0854 [Vibrio vulnificus YJ016] gi|37201056|dbj|BAC96880.1| conserved hypothetical protein [Vibrio vulnificus YJ016] Length = 565 Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 17/192 (8%), Positives = 46/192 (23%), Gaps = 23/192 (11%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + I R +G +T +L + +A + E+ + +P+ Sbjct: 63 RNIILKARQLGFSTAIDIYLLDEALFNNRLKCGIVAQDKQAA-----GEIFRTKVEVPYD 117 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + ++ + + + ++ + Sbjct: 118 NLPAWLKAAIPIVERKSGANGGRIVFKNGSSIQVATSFRSGTVQRLHISEHGKI------ 171 Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP-----------LED 247 + P + G ++ N + S + G FY + ED Sbjct: 172 -CAKYPQKAKEVKTGTLNAIHQNAICFIESTAEGVGGDFYTMCMRAMEQAKSGVELSRED 230 Query: 248 WKRYQIDTRTVE 259 + + Sbjct: 231 YHFHFFAWWQDP 242 >gi|227822449|ref|YP_002826421.1| DNA packaging protein Gp2 [Sinorhizobium fredii NGR234] gi|227341450|gb|ACP25668.1| DNA packaging protein Gp2 [Sinorhizobium fredii NGR234] Length = 454 Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 37/297 (12%), Positives = 76/297 (25%), Gaps = 36/297 (12%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI-SAGRGIGKT---------TLNAWMMLWL 101 R + + + + ++ ++ + AG +GKT L W Sbjct: 8 RRRRTDILARYRPYAKQREFHAAGASYRERLFMAGNQLGKTLAGAAEAAMHLTGRYPNWW 67 Query: 102 ISTRPGMSIICIA--NSETQLKNTLWAEV-------SKWLSMLPHRHWFEMQSLSLHPSG 152 R I+ +A S ++ + + + W + + + SG Sbjct: 68 QGRRFDKPIVMLAGSESYELTRDGVQRLLVGPPLNEADWGTGFIPKATIRATTRRSGASG 127 Query: 153 WYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212 + + + + + V+ DE P+ + Sbjct: 128 ALDSVTVRHVSGGASTLLFKAYEQGRGK------WQANTVDYVWFDEEP--PEDVY--FE 177 Query: 213 GFFTELNPNRFWIMTSNTRRL-NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271 G +T + + D + + E + II Sbjct: 178 GITRTNATRGAIAVTFTPLKGLSNVVARYLMEKSPDREVITMTIEDAEHYTPEERQRIIE 237 Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIM-GCDIAGE 327 Y AR + P P EEA+ E D + + G D + Sbjct: 238 SYPAHEREARTKG---VPALGSGRIFP--VTEEAIRVEPFDIPKHWVQIGGLDFGWD 289 >gi|254229671|ref|ZP_04923081.1| dead/deah box helicase domain protein [Vibrio sp. Ex25] gi|262395214|ref|YP_003287068.1| ATP-dependent RNA helicase SrmB [Vibrio sp. Ex25] gi|151937792|gb|EDN56640.1| dead/deah box helicase domain protein [Vibrio sp. Ex25] gi|262338808|gb|ACY52603.1| ATP-dependent RNA helicase SrmB [Vibrio sp. Ex25] Length = 407 Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 45/318 (14%), Positives = 85/318 (26%), Gaps = 50/318 (15%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 + + +P + Q E + SA G GKT L Sbjct: 16 EAIEEMGYKRPTKIQAEAIPQALDG------------RDILASAPTGTGKTAAFVLPALQ 63 Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 + P I+ + + A+ ++ L+ + F + + Sbjct: 64 YLQDFPRRKPGPARILILTPTRELAMQI--ADQARALAKNTKLNIFTITGGVQYQEHADI 121 Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 Q + + + + DEA D+ + Sbjct: 122 LATTQDI--------VVATPGRLKEYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRL 173 Query: 216 TELNPNRFWIMTSNTR----RLNGWFYDIFNIP---------LEDWKRYQIDTR-TVEGI 261 + R + + + G+ D+ N P E K Q R Sbjct: 174 SNECRWRKQTLLFSATLEGKGVEGFTADLLNDPAEIDAKSPLRERKKIAQWYHRADDAEH 233 Query: 262 DSGFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AID 312 + II++ + V E L + Q + IP ++I E R Sbjct: 234 KLELLKHIITQQAERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFR 293 Query: 313 DLYAPLIMGCDIAGEGGD 330 D +++ D+A G D Sbjct: 294 DGTVNVLLATDVAARGID 311 >gi|317140295|ref|XP_001818107.2| DEAD/DEAH box helicase [Aspergillus oryzae RIB40] Length = 1489 Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 28/230 (12%), Positives = 65/230 (28%), Gaps = 22/230 (9%) Query: 39 GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98 G P + +P +WQ E ++ +D + A GKT ++ + + Sbjct: 816 GSAPDPRVYDFEPDKWQREILDQIDA------------RKSLFVVAPTSAGKTFISFYAI 863 Query: 99 LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 ++ I+ +A ++ + + L++H + Sbjct: 864 KQILEDDNEGVIVYVAPTKALVNQIA---AEVQARFSKNFKETGKSVLAIHTRDYRINNP 920 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218 + + + + + D + ++ + DE + I L Sbjct: 921 TGCQVLITVPHILQIMLLAPANADPW----SSRVKRIIFDEIHCIGQADDGVIWEQLLLL 976 Query: 219 NPNRFWIM---TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265 P + N + N W D K + TR + + Sbjct: 977 APCPIIALSATVGNPQEFNKWLKLTQRANGNDLKMIEHSTRYSDLRKYTY 1026 >gi|271969878|ref|YP_003344074.1| helicase [Streptosporangium roseum DSM 43021] gi|270513053|gb|ACZ91331.1| putative helicase [Streptosporangium roseum DSM 43021] Length = 469 Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 36/295 (12%), Positives = 73/295 (24%), Gaps = 45/295 (15%) Query: 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136 + + G GKT M+ + G ++ +A++ L + E + S L Sbjct: 94 RTRLLLHMPTGSGKTRTTLSMVCDFLREHEGRPVLWLASTRELL-DQAAREFHRAWSSLG 152 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 R + W + D Y+ + + Sbjct: 153 DRE-------VPILAAWSGQDWRSEDLTDGLLVASLQTIYARRAEPGLLRDLGRRIGLIV 205 Query: 197 NDEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLN---GWFYDIFNIPLEDWKRYQ 252 DEA + + P + S T D E K Sbjct: 206 FDEAHQAIAPTYRQVVQQLSVAGQPITPIVGLSATPGRTFVGSPADDELAEFFEHTKIEL 265 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 + +LG+ P + E Sbjct: 266 ETASDGGATGPVEYLIQQGYLAEPE----FRLLGELPDVDE---------------EPSV 306 Query: 313 DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGCPVGSSI 367 D P +G D G+ ++ + + +L++E+++ +S+ Sbjct: 307 DSDDPAELGMD--------------EGDYLKEVTAATLQLVKESHRRIIVFAASV 347 >gi|319762143|ref|YP_004126080.1| terminase [Alicycliphilus denitrificans BC] gi|317116704|gb|ADU99192.1| Terminase [Alicycliphilus denitrificans BC] Length = 501 Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 37/312 (11%), Positives = 74/312 (23%), Gaps = 56/312 (17%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q +F+ V NP + AI + R GK+ L A ++L + Sbjct: 33 EFQKQFLRDVYD---------NPAGTRRAILSIARKNGKSGLIAGLLLAHL--------- 74 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + Q + +S+ + L + + P + S Sbjct: 75 -VGPEAKQNAQIVSGAMSRDQAALVFN--LACKMVQQSPKLAPLVRIIPSGKRLIGLPMN 131 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP-NRFWIMTSNT 230 H DE + + T ++ +T Sbjct: 132 VEFRA---LAADGKTAHGLSPSLAILDETGQVRGPQSDFVDAITTSQGAHEAPLLIAIST 188 Query: 231 RRLNG------WFYDIFNIPLEDWKRYQIDTRT-------------VE-----GIDSGFH 266 + + W D + + Sbjct: 189 QAASDQDLFSQWLDDAQRSADPRIVCHLYAAPEGCDLMDESAWRAANPALGLFRSEDDLR 248 Query: 267 EGIISRYGLDSDVARIEILGQFPQQEVNN-FIPHNYIEEAMSREAIDDLYAPLIMGCDI- 324 E + + S L + + F+ + + + D P+ G D+ Sbjct: 249 EQMTQAQRMPSMENSARNLLLNQRVSTESPFVSPDVWKANCANLRSFD--GPVFAGLDLS 306 Query: 325 AGEGGDKTVVVF 336 A D T +V Sbjct: 307 ART--DLTALVI 316 >gi|116196286|ref|XP_001223955.1| hypothetical protein CHGG_04741 [Chaetomium globosum CBS 148.51] gi|88180654|gb|EAQ88122.1| hypothetical protein CHGG_04741 [Chaetomium globosum CBS 148.51] Length = 2013 Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 22/155 (14%), Positives = 37/155 (23%), Gaps = 22/155 (14%) Query: 57 EFMEAVDVHCHSNVNNSNPTIF--------KCAISAGRGIGKTTLNAWMMLWLISTRPGM 108 + +E + N +F + + G GKT M W RPG Sbjct: 1134 QALEEIYAQRFHFFNPMQTQLFHTLYHRPANVLLGSPTGSGKTVAAELAMWWAFRERPGS 1193 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 ++ IA + ++ V W + L ++ L Sbjct: 1194 KVVYIAPMKALVRER----VKDWGARLAKPLGLKLVEL--------TGDNTPDTRTIQDA 1241 Query: 169 YTITCRTYSEERPDTFVGPHN--THGMAVFNDEAS 201 I + V DE Sbjct: 1242 DIIITTPEKWDGISRSWQTRGYVRKVSLVIIDEIH 1276 >gi|312889922|ref|ZP_07749466.1| type III restriction protein res subunit [Mucilaginibacter paludis DSM 18603] gi|311297454|gb|EFQ74579.1| type III restriction protein res subunit [Mucilaginibacter paludis DSM 18603] Length = 907 Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 30/287 (10%), Positives = 67/287 (23%), Gaps = 36/287 (12%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 ++Q ++ +D H +N + + A G GKT L + + R + Sbjct: 15 RKYQQRVLDGLDQHLKNNHLH---------VIAPPGSGKTVLGIEVAI-----RINQPTL 60 Query: 112 CIANSETQLKNTLWA----------EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161 +A + ++N V W+S F +L + Sbjct: 61 ILAPTIA-IRNQWIQKLCDLFLQTGMVPDWVSRDIRHPEFLTIVTYQGLHAACNDLKVEE 119 Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHN---THGMAVFNDEASGTPDIINKSILGFFTEL 218 D + + + DEA + ++++ Sbjct: 120 SETDIEEEITENEIGDSSNYNLENIIAGLKEKQIKTIVVDEAHHLKNEWWQTLIK-IKNS 178 Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT-------VEGIDSGFHEGIIS 271 +T+ + L +I D + Sbjct: 179 IKPVIIGLTATPPYDVTPNEWQRYLELNGPIDVEISVPELIIEGDLCPHQDYVYLSHPTE 238 Query: 272 RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318 R I F + + + + ++L Sbjct: 239 NEFQQIAQFREGIELLFEEIKNDETLSRAIESHPAWINPGENLEWIY 285 >gi|227827980|ref|YP_002829760.1| hypothetical protein M1425_1713 [Sulfolobus islandicus M.14.25] gi|227459776|gb|ACP38462.1| protein of unknown function DUF699 ATPase putative [Sulfolobus islandicus M.14.25] Length = 726 Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 18/132 (13%), Positives = 37/132 (28%), Gaps = 21/132 (15%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 ++A RG GK+ + +L++ +I+ + + + + V K L L ++ Sbjct: 218 LVVTAARGRGKSASIGLFLSYLMTEEKFGNILVTSPTYYSSQEI-FNFVIKGLDALNVKY 276 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 S + + N G + DE Sbjct: 277 KLTTSKD--------------------GKIMKITTGESRVKWVSPDLARNEEGDLIVVDE 316 Query: 200 ASGTPDIINKSI 211 A+ I Sbjct: 317 AAAIGMEFLDYI 328 >gi|260588227|ref|ZP_05854140.1| putative prophage, terminase, ATPase subunit [Blautia hansenii DSM 20583] gi|260541365|gb|EEX21934.1| putative prophage, terminase, ATPase subunit [Blautia hansenii DSM 20583] Length = 620 Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 44/351 (12%), Positives = 92/351 (26%), Gaps = 47/351 (13%) Query: 47 HFSQPHRWQLEFME-AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 P ++ EF+ + NS F + + RG GK+T+ A + Sbjct: 43 GIRNPTKFMKEFIGVELLDSQEYVFMNSWNKPFCLWLES-RGAGKSTMLALYFMTKGLLF 101 Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 + + Q + + ++ A Sbjct: 102 NNYWAYICSGNADQAQE-TFRKIEDIAKKNIESMTGLTDVFVNELVKNQANTDGFVRSPM 160 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF-- 223 Y + ++ + G AV DE S + I I G FT +N Sbjct: 161 GFTYKLYNGSFVKTLNSNIDGKRGKRANAVCFDEGSWLSEEIFNVI-GAFTAVNKEFKLG 219 Query: 224 ---------------WIMTSNTRRLNGWFYDIFNIPL-------EDWKRYQIDTRTVEGI 261 + S+ ++ FY+ + + + I+ V Sbjct: 220 GDIDVNAIPREIPNQLLYASSASSVDTAFYNKYRDFSKKMLLGDDRYFVADINCDIVIHA 279 Query: 262 DSGFH---------EGIISRYGLDSDVARIEILGQFPQQEV-NNFIPHNYIEEAMSREAI 311 E + + + + A E +F + N I + I + Sbjct: 280 TQKGIPLNKSLLSQETVDNEMRNNPEKALREYYNRFTKDGGVNQIIKRSLIVRNSEKYVP 339 Query: 312 DDLYAP----LIMGCDIAGEGGDKTVVV-----FRRGNIIEHIFDWSAKLI 353 ++ D A + TV++ G ++ + + + Sbjct: 340 VMYNDTGKRKFVLCYDPARNIDNSTVLISEILDADEGYKLKIVNSVNFTDL 390 >gi|154500496|ref|ZP_02038534.1| hypothetical protein BACCAP_04168 [Bacteroides capillosus ATCC 29799] gi|150270727|gb|EDM98023.1| hypothetical protein BACCAP_04168 [Bacteroides capillosus ATCC 29799] Length = 750 Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 49/180 (27%), Gaps = 10/180 (5%) Query: 60 EAVDVHCHSNVNN----SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 H + ++ F + G GKT A +L R I+ +A+ Sbjct: 23 RVPYEHQKQAMECMDRINSDAAFSTLVVLPTGGGKTYTAALWLLHNAIDR-HKKILWMAH 81 Query: 116 SETQLKNTLWAEVSKWL-SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 + L A +PH F SG + + D I+ Sbjct: 82 RQMLLDQAAEAFQKYAYTETIPHISGFRY----RIISGSGSHSRTVDISPDDDLLIISKD 137 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 + + + DEA + + ++ + P+ I + T Sbjct: 138 SIGRNLSALDEWLAGEEELFLVVDEAHHSTAKTYRRVIDYVRSKVPHVKLIGLTATPFRT 197 >gi|123878605|sp|Q18LD7|TRM3_ELHVK RecName: Full=Tripartite terminase subunit UL15 homolog gi|109639437|gb|ABG36582.1| terminase [Elephantid herpesvirus 1] Length = 660 Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 22/204 (10%), Positives = 60/204 (29%), Gaps = 21/204 (10%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAI-SAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 E+++ + + N + + K + R GKT + ++ +LI +S+ +A+ Sbjct: 175 EYIKRLFNIENINTSVLDTFKHKTTVFLVPRRHGKTWILTPIITFLIKNFSNISVGYVAH 234 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 + ++ + +P+ + + + +S+ + Sbjct: 235 QKHVSQHVMKEVEILCRREIPYVVE-------------NKDNVISVIRTNSRSCALFASC 281 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 + + DE++ +I+GF + +I + NT + Sbjct: 282 F------NTNSIRGQSFNILLVDESNFIKKEALHAIIGFLAQSTAKIIFISSCNTSTQST 335 Query: 236 WFYDIFNIPLEDW-KRYQIDTRTV 258 F Sbjct: 336 SFLAHVKKTPTQILNVISYVCEEH 359 >gi|257469469|ref|ZP_05633561.1| PhoH family protein [Fusobacterium ulcerans ATCC 49185] gi|317063713|ref|ZP_07928198.1| phoH family protein [Fusobacterium ulcerans ATCC 49185] gi|313689389|gb|EFS26224.1| phoH family protein [Fusobacterium ulcerans ATCC 49185] Length = 435 Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 50/194 (25%), Gaps = 19/194 (9%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 + G G GKT L L L+ R + IA + L + Sbjct: 245 VTLVGGAGTGKTLLAIATGLELVVERKKYKKLLIA-----------RPIIPMGKDLGYLP 293 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE---ERPDTFVGPHNTHG--MA 194 E + L + + S D K + + Sbjct: 294 GSEKEKLKPWMQPIFDNIDFLSEAKDDKTGEKVVEGLEAMGILKIEALTYIRGRSIPRGL 353 Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254 + DEA + K+I T N I T + ++++ + D L Sbjct: 354 IIIDEAQNLTPLEIKTI---VTRAGENTKMIFTGDPQQIDNPYLDSNTNGLTYLADRLKT 410 Query: 255 TRTVEGIDSGFHEG 268 V + E Sbjct: 411 EDIVGHVTLKKGER 424 >gi|92117549|ref|YP_577278.1| phage terminase [Nitrobacter hamburgensis X14] gi|91800443|gb|ABE62818.1| phage Terminase [Nitrobacter hamburgensis X14] Length = 542 Score = 46.5 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 44/327 (13%), Positives = 91/327 (27%), Gaps = 58/327 (17%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR---PGM 108 WQ + + H + T+ RG KT+L A + L PG Sbjct: 49 DPWQERIVRRIYGPRHDDGRRIVNTVTMLL---PRGNRKTSLGAALALLHTIGPERMPGS 105 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 +I A+ Q + E + + + + A + + Sbjct: 106 EVIFSASDRKQ-SGIAFKEARGIVQA--DKRLVKAT------KVYDAFNSAKKIAYPKDS 156 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMT 227 + + + V DE + + +++ + + T Sbjct: 157 VELEIISADAPSSE------GRTPAFVLADETHIWRGKDLWTVLTNGLDKIDNSLLVVTT 210 Query: 228 SNTRRLNGWFYDIFNIPLE----------------------DWKRYQIDTRTVEGIDSGF 265 + R + Y+I + + D+ ++ R G G+ Sbjct: 211 TAGRGTDNIGYEIIDRARKIARGEIVDPTVLPVLFEAEPDCDYTSEEVWRRVNPGSPHGY 270 Query: 266 ---------HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE-AMSREAIDDLY 315 + S + R + L + + F+ +E A + Sbjct: 271 PSIEGFRRHVKRAQDNPTERSSLKRYK-LNIWEDSSSSPFVDMLVYDEGAGEIDTAILDG 329 Query: 316 APLIMGCDIAGEGGDKTVV--VFRRGN 340 P +G D++ D +VV FR G+ Sbjct: 330 EPCWLGVDLS-SSIDLSVVIACFRDGD 355 >gi|290466769|gb|ADD25699.1| putative terminase large subunit [Lactococcus phage 1358] Length = 454 Score = 46.5 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 33/264 (12%), Positives = 65/264 (24%), Gaps = 20/264 (7%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 + GRG K++ ++ I P + +++ E K ++ LP Sbjct: 50 WLKGGRGSLKSSYIGTEIVLGIMEDPLAHAYVFRKVGDTCRGSVFNEYQKIIARLPDSMQ 109 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + + G + + + TF DE Sbjct: 110 ANWKRQ---LNPLQLVYTNPDTGHEQFILFKGGDNPRKVKSATFPQGFVRFIHYEEADEF 166 Query: 201 SGTPDIINKSILGFFTELNPNRFWIMT--SNTRRLNGWFYDIFNIPLED-------WKRY 251 ++I + + + N ++ G + + L + Sbjct: 167 E--SPQDFRTINASLLRGSDDITPAVFYSYNPPKIRGHWLNEHVRDLTGTPMNYVSHTNF 224 Query: 252 QIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310 + + F + E LG F N IE + + Sbjct: 225 LTCYKLHPEWLGKTFLAEAFHTMKYNRRQFDWEYLGLDVATGNEVF---NNIESRVITQE 281 Query: 311 IDDLYAPLI-MGCDIAGEGGDKTV 333 D + G D G D V Sbjct: 282 ERDNFEDYRKSGVDF-GFSKDPFV 304 >gi|261212921|ref|ZP_05927205.1| hypothetical protein VCJ_003197 [Vibrio sp. RC341] gi|260837986|gb|EEX64663.1| hypothetical protein VCJ_003197 [Vibrio sp. RC341] Length = 506 Score = 46.5 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 18/192 (9%), Positives = 47/192 (24%), Gaps = 23/192 (11%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + I R +G +T +L + +A + E+ + +P+ Sbjct: 4 RNIILKARQLGFSTAIDIYLLDEALFNKRLKCGIVAQDKQAA-----GEIFRTKVEVPYD 58 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + ++ + M + ++ + Sbjct: 59 NLPAWLKAAIPTEERKSGANGGRMVFKNGSSIQVATSFRSGTVQRLHISEHGKI------ 112 Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP-----------LED 247 + P + G ++ N + S + G FY + ED Sbjct: 113 -CAKYPHKAKEVKTGTLNAIHQNAICFIESTAEGVGGDFYTMCMRAMEQAKSGVELSRED 171 Query: 248 WKRYQIDTRTVE 259 ++ + Sbjct: 172 YQFHFFAWWQDP 183 >gi|77359468|ref|YP_339043.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas haloplanktis TAC125] gi|76874379|emb|CAI85600.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125] Length = 408 Score = 46.5 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 21/196 (10%), Positives = 41/196 (20%), Gaps = 15/196 (7%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-----SII 111 + SA G GKT + + P ++ Sbjct: 18 KMGYETPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAIQYLLDFPRRDPGFARVL 77 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + + + + +L R +L + + + + Sbjct: 78 VMTPTRELAYQ-----IHEQCELLAKR-----TNLKIGVVTGGINYGTHKEIFEKNNDIL 127 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 H H + DEA D+ K + + NR + Sbjct: 128 IATPGRLMEYLETENFHAEHVEMLIIDEADRMLDMGFKKEMSRICDEAKNRRQCFLFSAT 187 Query: 232 RLNGWFYDIFNIPLED 247 L D Sbjct: 188 LEGDSVERFAETTLND 203 >gi|331266892|ref|YP_004326522.1| helicase superfamily protein [Streptococcus oralis Uo5] gi|326683564|emb|CBZ01182.1| helicase superfamily protein [Streptococcus oralis Uo5] Length = 877 Score = 46.5 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 25/196 (12%), Positives = 59/196 (30%), Gaps = 30/196 (15%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 ++Q + ++ + + ++A G GKTT+ + R G + Sbjct: 11 RQYQKQVLDCFQDYQADGHVH--------LVAAP-GSGKTTIG-----IELIARFGNPAL 56 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + + E +W+ + + Q LS S E+ ++ ++ Sbjct: 57 ILVPT------VTIRE--QWVDRIQTAFLEDGQRLSDLVSQNLKEMKALTIVTYQAFHSA 108 Query: 172 TCRTYSEERPDTFVG--------PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223 + S+E + + DE + KS+ F + P + Sbjct: 109 MNQLQSQEDGEAEDFVGFDLLASLRAQKVATLCLDECHHLRNEWWKSLEAFRKQYGPLKL 168 Query: 224 WIMTSNTRRLNGWFYD 239 +T+ + Sbjct: 169 ISLTATPPYDSEPELW 184 >gi|291458062|ref|ZP_06597452.1| CRISPR-associated helicase Cas3 domain protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291419394|gb|EFE93113.1| CRISPR-associated helicase Cas3 domain protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 965 Score = 46.5 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 23/188 (12%), Positives = 53/188 (28%), Gaps = 14/188 (7%) Query: 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN--TLWAEVSKWLSM 134 +++ ++ G GKT + L II + + ++ ++ E+ ++ Sbjct: 243 LYRLSV--PTGGGKTIASLAFALRHALCHGMKRIIYVIPYTSIIEQNAAVFKEILGEQNV 300 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 L H + + M + + RP HN Sbjct: 301 LEHHSNVDYEDDEE-LCPMQLAAENWDMPLIVTTNVQFFESLFSNRPSKCRKIHNIANSV 359 Query: 195 VFNDEASGTPDIINK----SILGFFTELNPNRFWIMTSNTR-----RLNGWFYDIFNIPL 245 + DEA P + SI + + + + G ++ Sbjct: 360 LIFDEAQMLPKDYLQPCISSIEELIRRYHCSAVLCTATQPDIDPFLQSAGEVRELCPDMA 419 Query: 246 EDWKRYQI 253 E + ++ Sbjct: 420 EQFSFFRR 427 >gi|196048452|ref|ZP_03115627.1| phage terminase, large subunit, pbsx family [Bacillus cereus 03BB108] gi|196020709|gb|EDX59441.1| phage terminase, large subunit, pbsx family [Bacillus cereus 03BB108] Length = 419 Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 37/268 (13%), Positives = 76/268 (28%), Gaps = 25/268 (9%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 ++ RG K+ + I P +++ + LK + + ++ ++ L Sbjct: 23 NFYRVC-KGSRGSKKSKTTVLNFVKRIMQYPWANLLVVRRYSNTLKQSCYTDLKWAINRL 81 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 + F+ + I R + T + + Sbjct: 82 GVKDQFKFNESM------------PEITYKPTGQKILFRGLDDPLKITSITVDVGNLCWA 129 Query: 196 FNDEASGTPDIIN-----KSILGFFTELNPNRFWIMTSNTRRLN----GWFYDIFNIPLE 246 + +EA D +SI G F + + +T N N +F+D + Sbjct: 130 WFEEAYEIEDQHKFETVVESIRGSFDAPDFFKQITVTFNPWSENHWLKSYFFDEATQAYD 189 Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306 + + E +D S Y + ARI G++ + + + Sbjct: 190 TF-AITTTYKCNEWLDEQDRARYESLYVKNPRRARIVCDGEW-GVADGLVYENFQVRDFD 247 Query: 307 SREAIDDLYAPLIMGCDIAGEGGDKTVV 334 E G D D T + Sbjct: 248 IDEIRQRKDVQSAFGLDFGYT-NDPTAL 274 >gi|323342091|ref|ZP_08082324.1| DEAD/DEAH box family ATP-dependent RNA helicase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464516|gb|EFY09709.1| DEAD/DEAH box family ATP-dependent RNA helicase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 446 Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 56/233 (24%), Gaps = 22/233 (9%) Query: 44 PLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS 103 L F + Q + ++ + + + G GKT + +L LI Sbjct: 11 ELNKFRELTSVQEKVLKEI------------KNKRDLIVKSDTGTGKTHAFLFAILELID 58 Query: 104 TRPGMS-IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162 + + +A + E++ + + ++ + + Sbjct: 59 PTVDQTQALILAPT---------RELAMQIQNFAREITTLDERITTELAIGGMDNSRLKK 109 Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222 I+ + + ++ A+ DE D + + N Sbjct: 110 KIEKQPMILITTPGKFLDILSWSVLRLDFIKALVIDETDMMLDYGFINEVDTIASRLSND 169 Query: 223 FWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275 M + G I + + + ID Sbjct: 170 TLFMLYSATIPTGLRAFIKKYLKHPIEIVSTEEKLKPRIDHILINQRHRDMNE 222 >gi|323475068|gb|ADX85674.1| ATPase of unknown function [Sulfolobus islandicus REY15A] Length = 726 Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 18/135 (13%), Positives = 37/135 (27%), Gaps = 21/135 (15%) Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 P ++A RG GK+ + +L++ +I+ + + + + V K L Sbjct: 213 PGKRVLVVTAARGRGKSASIGLFLSYLMTEEKFGNILVTSPTYYSSQEI-FNFVIKGLDA 271 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 L ++ S + + N G Sbjct: 272 LNVKYKLTTSKD--------------------GKIMKITTGESRVKWVSPDLARNEEGDL 311 Query: 195 VFNDEASGTPDIINK 209 + DEA+ Sbjct: 312 IVVDEAAAIGMEFLD 326 >gi|94270011|ref|ZP_01291630.1| Helicase-like:Peptidase S24, S26A and S26B:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase-like [delta proteobacterium MLMS-1] gi|93450973|gb|EAT01956.1| Helicase-like:Peptidase S24, S26A and S26B:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase-like [delta proteobacterium MLMS-1] Length = 1196 Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 26/201 (12%), Positives = 48/201 (23%), Gaps = 34/201 (16%) Query: 34 RFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93 P E +P Q E + A+ + + G+GKT L Sbjct: 394 HALPISPGSDEQEAPPEPTALQKEALAALTATRREG-------YRRGLVVMATGLGKTWL 446 Query: 94 NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153 A + ++ +A+ E L+ + L Sbjct: 447 AA----FDAGHCTARRVLFVAHREEILQQAA--------------------ATFLRIRPR 482 Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213 D++ + + R + H V DE + Sbjct: 483 ARAGFYLGRQRDAEVDLLFASIQTLARSEHLARFAADHFDYVVVDEFH---HAAAATYRR 539 Query: 214 FFTELNPNRFWIMTSNTRRLN 234 NP +T+ R + Sbjct: 540 LLRHFNPRFLLGLTATPERTD 560 >gi|185178777|ref|ZP_02964578.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|184209393|gb|EDU06436.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] Length = 470 Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 20/159 (12%), Positives = 47/159 (29%), Gaps = 16/159 (10%) Query: 54 WQLEFMEAVDVH-------CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 +Q ++++ + A G GKT A +L + Sbjct: 8 YQKWILDSLADQKIFEPTPIQTKAIPLISKKENVIGIAPTGTGKTLAFALPILNNLDLSQ 67 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 + I IA + ++ +++++ + P L + + +Q + Sbjct: 68 KLQAIIIAPTRELVRQI-FSKIALFKKQQPL--------LQIKMLIGGESIDKQINSQLN 118 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 K + I ++ + + DEA D Sbjct: 119 KAHIIVATPTRLKQVLSSQVLDLRSINTLVFDEADMLMD 157 >gi|171920644|ref|ZP_02931883.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|188024390|ref|ZP_02997054.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518412|ref|ZP_03003908.1| superfamily II DNA and RNA helicase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524231|ref|ZP_03004285.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867393|ref|ZP_03079397.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273326|ref|ZP_03205862.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554212|ref|YP_002285037.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550559|ref|ZP_03771508.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551102|ref|ZP_03772048.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903372|gb|EDT49661.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|188018658|gb|EDU56698.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998157|gb|EDU67254.1| superfamily II DNA and RNA helicase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195660020|gb|EDX53400.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660869|gb|EDX54122.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249846|gb|EDY74626.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541713|gb|ACI59942.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225378917|gb|EEH01282.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379713|gb|EEH02075.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 445 Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 20/159 (12%), Positives = 47/159 (29%), Gaps = 16/159 (10%) Query: 54 WQLEFMEAVDVH-------CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 +Q ++++ + A G GKT A +L + Sbjct: 8 YQKWILDSLADQKIFEPTPIQTKAIPLISKKENVIGIAPTGTGKTLAFALPILNNLDLSQ 67 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 + I IA + ++ +++++ + P L + + +Q + Sbjct: 68 KLQAIIIAPTRELVRQI-FSKIALFKKQQPL--------LQIKMLIGGESIDKQINSQLN 118 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 K + I ++ + + DEA D Sbjct: 119 KAHIIVATPTRLKQVLSSQVLDLRSINTLVFDEADMLMD 157 >gi|17988794|ref|NP_541427.1| type I restriction-modification system restriction subunit [Brucella melitensis bv. 1 str. 16M] gi|17984612|gb|AAL53691.1| type i restriction-modification system restriction subunit [Brucella melitensis bv. 1 str. 16M] Length = 783 Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 81/291 (27%), Gaps = 32/291 (10%) Query: 11 LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70 + L +L A + +NFV+ G + K L + Q AV Sbjct: 244 QDILLAGLLAPANLLDLIRNFVVFETIGGRRIKKLARYQQ--------FVAVGKAIERIR 295 Query: 71 NNSNPTIFKCAISAGRGIGKTTLNAWMM--LWLISTRPGMSIICIANSETQLKNTLWAEV 128 NP I +G GK+ ++ L + +I+ + + Sbjct: 296 TAPNPQRRGGVIHHTQGSGKSLTMVFLATKLRRLPEAENPTIVIVTDRTDLDDQIT---- 351 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR-TYSEERPDTFVGP 187 F+ + + L +++ + +T + P Sbjct: 352 ----------GQFQRSGFANPMQAESGDSLRKALSGGAGTTVLTTVHKFHSAVPKRSSVI 401 Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR--RLNGWFYDIFNIPL 245 + V DEA ++ PN I + T + + + F L Sbjct: 402 SKARNVFVMVDEAH---RTQYGALAARMRAGLPNACMIAFTGTPIDKKDRSTREAFGDYL 458 Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 + + + + E +R +D E+ FP+ + Sbjct: 459 HRY-LIDQAVKDGATVPIYY-EMRDARIRIDGRDFEREVRAAFPELSEDEI 507 >gi|37680384|ref|NP_934993.1| DNA or RNA helicase [Vibrio vulnificus YJ016] gi|37199131|dbj|BAC94964.1| DNA or RNA helicase [Vibrio vulnificus YJ016] Length = 930 Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 25/184 (13%), Positives = 50/184 (27%), Gaps = 34/184 (18%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P+ QL+ ++ + + + G G+GKT L+A + + Sbjct: 180 PNSAQLDALQRLSETRQKGNV-------RGLVVMGTGMGKTWLSA----FDAKQLEAKRV 228 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + +A+ E L L W +G+Y +Q Sbjct: 229 LFVAHREEILTQALMTFAKLW---------------PQKSAGYYHGKSKQKNK-----EM 268 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 + S + + + DE +I P +T+ Sbjct: 269 LFASVQSLGKTAQLKHFSPDYFDYIVVDEFHHASAKTYLNI---LNHFEPKFLLGLTATP 325 Query: 231 RRLN 234 R + Sbjct: 326 ERTD 329 >gi|262402964|ref|ZP_06079524.1| hypothetical protein VOA_000945 [Vibrio sp. RC586] gi|262350463|gb|EEY99596.1| hypothetical protein VOA_000945 [Vibrio sp. RC586] Length = 565 Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 18/192 (9%), Positives = 47/192 (24%), Gaps = 23/192 (11%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + I R +G +T +L + +A + E+ + +P+ Sbjct: 63 RNIILKARQLGFSTAIDIYLLDEALFNKRLKCGIVAQDKQAA-----GEIFRTKVEVPYD 117 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + ++ + M + ++ + Sbjct: 118 NLPAWLKAAIPTEERKSGANGGRMVFKNGSSIQVATSFRSGTVQRLHISEHGKI------ 171 Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP-----------LED 247 + P + G ++ N + S + G FY + ED Sbjct: 172 -CAKYPHKAKEVKTGTLNAIHQNAICFIESTAEGVGGDFYTMCMRAMEQAKSGVELSRED 230 Query: 248 WKRYQIDTRTVE 259 ++ + Sbjct: 231 YQFHFFAWWQDP 242 >gi|229528225|ref|ZP_04417616.1| large subunit terminase [Vibrio cholerae 12129(1)] gi|229334587|gb|EEO00073.1| large subunit terminase [Vibrio cholerae 12129(1)] Length = 565 Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 18/192 (9%), Positives = 47/192 (24%), Gaps = 23/192 (11%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + I R +G +T +L + +A + E+ + +P+ Sbjct: 63 RNIILKARQLGFSTAIDIYLLDEALFNKRLKCGIVAQDKQAA-----GEIFRTKVEVPYD 117 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + ++ + M + ++ + Sbjct: 118 NLPAWLKAAIPTEERKSGANGGRMVFKNGSSIQVATSFRSGTVQRLHISEHGKI------ 171 Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP-----------LED 247 + P + G ++ N + S + G FY + ED Sbjct: 172 -CAKYPHKAKEVKTGTLNAIHQNAICFIESTAEGVGGDFYTMCMRAMEQAKSGVELSRED 230 Query: 248 WKRYQIDTRTVE 259 ++ + Sbjct: 231 YQFHFFAWWQDP 242 >gi|295840070|ref|ZP_06827003.1| translation initiation factor IF-2 [Streptomyces sp. SPB74] gi|197697038|gb|EDY43971.1| translation initiation factor IF-2 [Streptomyces sp. SPB74] Length = 489 Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 28/255 (10%), Positives = 62/255 (24%), Gaps = 26/255 (10%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 I G GK+ + + PG+ + + + L T Sbjct: 25 VLICGPAGTGKSLAMLQKLHFTCLAVPGLRALLVRQTHASLTGTTL-------------V 71 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 FE + + S + D ++ + DE Sbjct: 72 TFERTVVGEAMAAGLVRWFGGSARQPPAYRYANGSEILVGGLDRPEKFLSSEFDRIAVDE 131 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIM-TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 A+ +++++ P I+ +N + + + + R Sbjct: 132 ATQISKTAHETLITRLRGGAPTYKQIVCAANPAQPS--HWLKQRADTGTMRLINSRHRDN 189 Query: 259 E------GIDSGFHEGIISRYGLDSDVARIEI-LGQFPQQEVNNFIPHNYIEEAMSREAI 311 G + +S+ S V R+ + GQ+ + + + Sbjct: 190 PAYVNADGSLTEIGAAYLSKLDALSGVRRLRLRDGQW-AAAEGMVYDG-WDDAVHLIDPA 247 Query: 312 DDL-YAPLIMGCDIA 325 P D Sbjct: 248 PIPKEWPRWWVVDFG 262 >gi|52081321|ref|YP_080112.1| Phage terminase, large subunit protein [Bacillus licheniformis ATCC 14580] gi|52786700|ref|YP_092529.1| YqaT [Bacillus licheniformis ATCC 14580] gi|52004532|gb|AAU24474.1| Phage terminase, large subunit protein [Bacillus licheniformis ATCC 14580] gi|52349202|gb|AAU41836.1| YqaT [Bacillus licheniformis ATCC 14580] Length = 431 Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 37/275 (13%), Positives = 74/275 (26%), Gaps = 48/275 (17%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 F+ + G G K+ A ++ L +++ I +++ ++ ++ L Sbjct: 19 QKFQLLV-GGYGSSKSYHIALKLI-LKLLEEKRTVLVIREVYDTHRDSTFSHFEGIINDL 76 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 H + + + + I + + Sbjct: 77 EIDHIVRCMTSPM------------QVRFPNGSRIIFKGLDKPA-----KLKSINNISII 119 Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-------------- 241 + +E S K +LG I ++N + W Y F Sbjct: 120 WIEECSEVKYEGFKELLGRLRHPTLPLHMIFSTNPVGEDNWTYKHFFKDDLNNRFVLDDK 179 Query: 242 ------NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN 295 I L D + + + + D D+ RI G F V Sbjct: 180 ELYEKRTIVLNDTYYHHSTAEDNLFLPESYVRQLDELKEYDPDLYRIARKGHFGVNGVRV 239 Query: 296 F-----IPHNYIEEAMSREAIDDLYAPLIMGCDIA 325 F PH+ + +A+S +G D Sbjct: 240 FPQLEEWPHDEVMQAVSNIDCPIK----RVGMDFG 270 >gi|160942234|ref|ZP_02089543.1| hypothetical protein CLOBOL_07120 [Clostridium bolteae ATCC BAA-613] gi|158434791|gb|EDP12558.1| hypothetical protein CLOBOL_07120 [Clostridium bolteae ATCC BAA-613] Length = 829 Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 57/187 (30%), Gaps = 36/187 (19%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 QP Q+E + A+ K I A GIGKT L A ++P Sbjct: 220 QPRGAQIEALYALKNSRLEGSE-------KALICAATGIGKTYLAA------FDSQPYER 266 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ +A+ E LK AE + + +F + + D Sbjct: 267 VLFVAHREEILKQA--AESFRNVRHSDDYGFFYGKEKTR----------------DKSVI 308 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNRFWIMTS 228 + + + + + DE D K + F P +T+ Sbjct: 309 FASVSSLGKTDYLNESYFARDYFDYIVIDEFHHAVTDQYKKIMEYF----KPRFLLGLTA 364 Query: 229 NTRRLNG 235 R++G Sbjct: 365 TPERMDG 371 >gi|320582894|gb|EFW97111.1| pre-mRNA processing RNA-helicase, putative [Pichia angusta DL-1] Length = 752 Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 33/288 (11%), Positives = 65/288 (22%), Gaps = 57/288 (19%) Query: 32 VMRFFPWGIKGKPLE--------HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS 83 W G PL F P Q E + + Sbjct: 186 ARPIITWDHLGLPLSLRSALDSLGFEAPTPIQCEALPN--------------------VM 225 Query: 84 AGR--------GIGKTTLNAWMMLWLISTRPGM---SIICIANSETQLKNTLWAEVSKWL 132 +G G GKT + + P + + + + E S +L Sbjct: 226 SGHDLIGIAKTGSGKTLAFLLPLFRQLLANPAAPSVRALVMTPTRELAMQI-FNESSVFL 284 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 L R S+ + + R + +H Sbjct: 285 EALKLRGCCCYGGQSISQQIAEIKKGCDLVVGTPG------RIIDLLCANNGRVLRLSHV 338 Query: 193 MAVFNDEASGTPDIINK---SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249 + DEA D+ + + T + + R+ P+E Sbjct: 339 TYLVLDEADRMFDMGFEPQVMKILKVTRPDRQTVLFSATFPPRMEALARRCLTDPVEVLV 398 Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR-IEILGQFPQQEVNNF 296 + + + + R +++L +F + Sbjct: 399 GAK-------NLVNDKIMQQFEILDEEQKFGRLLQVLARFQSSDSGKI 439 >gi|156044614|ref|XP_001588863.1| hypothetical protein SS1G_10411 [Sclerotinia sclerotiorum 1980] gi|154694799|gb|EDN94537.1| hypothetical protein SS1G_10411 [Sclerotinia sclerotiorum 1980 UF-70] Length = 1660 Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 25/240 (10%), Positives = 60/240 (25%), Gaps = 31/240 (12%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P WQ + + +D + A GKT ++ + M ++ + Sbjct: 620 PDGWQRDVLNQLDADKS------------IFVVAPTSAGKTFISFYAMEQILRADNDGVL 667 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + +A ++ + ++ P ++H + + + + Sbjct: 668 VYVAPTKALVNQIAAEVQGRFSKRFPQAGKGVW---AIHTRDYRVNNPTGCQILVTVPHI 724 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM---T 227 + S ++ + DE + + L P + Sbjct: 725 LQIMLLSPTNAKSW----APRVKRIIFDEIHSIGQSEDGVVWEQLLLLAPCPIIALSATV 780 Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287 N + W + + K + TR + E LG Sbjct: 781 GNPEQFADWLGETQKANGSELKMIKHSTRYS---------DLRKFMYEPPQTFHFEGLGD 831 >gi|153820181|ref|ZP_01972848.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|126509274|gb|EAZ71868.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] Length = 565 Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 18/192 (9%), Positives = 47/192 (24%), Gaps = 23/192 (11%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + I R +G +T +L + +A + E+ + +P+ Sbjct: 63 RNIILKARQLGFSTAIDIYLLDEALFNKRLKCGIVAQDKQAA-----GEIFRTKVEVPYD 117 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + ++ + M + ++ + Sbjct: 118 NLPAWLKAAIPTEERKSGANGGRMVFKNGSSIQVATSFRSGTVQRLHISEHGKI------ 171 Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP-----------LED 247 + P + G ++ N + S + G FY + ED Sbjct: 172 -CAKYPHKAKEVKTGTLNAIHQNAICFIESTAEGVGGDFYTMCMRAMEQAKSGVELSRED 230 Query: 248 WKRYQIDTRTVE 259 ++ + Sbjct: 231 YQFHFFAWWQDP 242 >gi|153800548|ref|ZP_01955134.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|124123992|gb|EAY42735.1| conserved hypothetical protein [Vibrio cholerae MZO-3] Length = 565 Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 18/192 (9%), Positives = 47/192 (24%), Gaps = 23/192 (11%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + I R +G +T +L + +A + E+ + +P+ Sbjct: 63 RNIILKARQLGFSTAIDIYLLDEALFNKRLKCGIVAQDKQAA-----GEIFRTKVEVPYD 117 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + ++ + M + ++ + Sbjct: 118 NLPAWLKAAIPTEERKSGANGGRMVFKNGSSIQVATSFRSGTVQRLHISEHGKI------ 171 Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP-----------LED 247 + P + G ++ N + S + G FY + ED Sbjct: 172 -CAKYPHKAKEVKTGTLNAIHQNAICFIESTAEGVGGDFYTMCMRAMEQAKSGVELSRED 230 Query: 248 WKRYQIDTRTVE 259 ++ + Sbjct: 231 YQFHFFAWWQDP 242 >gi|302879980|ref|YP_003848544.1| type III restriction protein res subunit [Gallionella capsiferriformans ES-2] gi|302582769|gb|ADL56780.1| type III restriction protein res subunit [Gallionella capsiferriformans ES-2] Length = 1010 Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 29/216 (13%), Positives = 56/216 (25%), Gaps = 33/216 (15%) Query: 37 PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96 W G+ P Q E ++A+ +N + A G GK+ ++ Sbjct: 169 EWLHSGRITLSRKHPLPHQQEALDAIADGLQTND-------RATVVMAC-GTGKSLVS-- 218 Query: 97 MMLWLISTRPGMSIICIANSETQLKNTL--WAEVSKWLSML------------PHRHWFE 142 LW R +I+ + S ++ L W + W + Sbjct: 219 --LWAAEQRECKAILVLVPSLALVRQLLHEWLRETAWERFTFMCVCSDPTVAKGADNLVV 276 Query: 143 MQSLSLHPSGWYAELLEQSM-GIDSKHYTITCRTYSEERPDTFVGPHNTH----GMAVFN 197 Q+ P + ++ + + + S + Sbjct: 277 HQADLDFPVTTESAVVSRFLNKAFDGIRIVFSTYQSAHVVAEGMPVGADGMALPFDLAIF 336 Query: 198 DEASGTPDIINKSILGFFTELNP--NRFWIMTSNTR 231 DEA T + N + T+ R Sbjct: 337 DEAHKTASREGTRFSFALEDANLPIRKRLFFTATPR 372 >gi|153212376|ref|ZP_01948158.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|124116584|gb|EAY35404.1| conserved hypothetical protein [Vibrio cholerae 1587] Length = 565 Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 18/192 (9%), Positives = 47/192 (24%), Gaps = 23/192 (11%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + I R +G +T +L + +A + E+ + +P+ Sbjct: 63 RNIILKARQLGFSTAIDIYLLDEALFNKRLKCGIVAQDKQAA-----GEIFRTKVEVPYD 117 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + ++ + M + ++ + Sbjct: 118 NLPAWLKAAIPTEERKSGANGGRMVFKNGSSIQVATSFRSGTVQRLHISEHGKI------ 171 Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP-----------LED 247 + P + G ++ N + S + G FY + ED Sbjct: 172 -CAKYPHKAKEVKTGTLNAIHQNAICFIESTAEGVGGDFYTMCMRAMEQAKSGVELSRED 230 Query: 248 WKRYQIDTRTVE 259 ++ + Sbjct: 231 YQFHFFAWWQDP 242 >gi|308481512|ref|XP_003102961.1| hypothetical protein CRE_31221 [Caenorhabditis remanei] gi|308260664|gb|EFP04617.1| hypothetical protein CRE_31221 [Caenorhabditis remanei] Length = 932 Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 32/289 (11%), Positives = 77/289 (26%), Gaps = 31/289 (10%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNS-------------NPTIFKCAISAGRGIGKTTLNAWM 97 P +WQ ++ + NP F I G GK+ + + Sbjct: 533 PTKWQR-VVDKGGHYDKCTPRGDLNQSQYAAVRMALNPNRFLVCIQGPPGTGKSHVLSIF 591 Query: 98 MLWLISTRPGMSII-CIANSETQLKNTLWAEVSKWLSMLPHR-HWFEMQSLSLHPSGWYA 155 + L+ ++ + LK + + + + PH + L+ S Sbjct: 592 LWKLLKEGKQAVVLTPTREALKNLKTMTLKAIRQKIYLHPHALMDISLIKEILNTSSAAI 651 Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI-INKSILGF 214 E ++ I + S + + V DEA+ + ++ Sbjct: 652 EAVKTINTIMPNLRIVFATMESTFTCEVMRSKQFNPEVCVI-DEAAQVMETVTWPAVNQM 710 Query: 215 --FTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT-----------RTVEGI 261 + T + + K+ Q Sbjct: 711 KRIVMAGDPKQLPALVKTEEAKARHLERSVMERIIEKKEQYSWIMLEEQYRSHKDITGWS 770 Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310 + F++G + ++ + + P+ F P +++ + + Sbjct: 771 NGCFYDGKLMNSTDVNNTLHTSLDPKPPKTYTKLFNPLVFVDTCLETDY 819 >gi|262199577|ref|YP_003270786.1| serine/threonine protein kinase [Haliangium ochraceum DSM 14365] gi|262082924|gb|ACY18893.1| serine/threonine protein kinase [Haliangium ochraceum DSM 14365] Length = 1280 Score = 46.1 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 28/248 (11%), Positives = 70/248 (28%), Gaps = 12/248 (4%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P + ++A ++ + P++ + G+GK+ L + + + P + + Sbjct: 456 PLVGRQAIIDAAQELVRQSMRTNTPSL--VTLLGDHGVGKSRLCRELAALVQAQHPEVRV 513 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + + + + E+ + + L ++ L +DS Sbjct: 514 LMLRA-GSPADD----ELDELVQRLDAMLHAMIEPGPLSARLLADPAAIAE-SLDSDEMA 567 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 T + + +AV D+ D + ++ + WI + Sbjct: 568 PTPSAVRKLG-NALRRVAGKLPLAVIVDDVHYASDEVLDALEYAALDAGGTPLWIAVAGH 626 Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGII--SRYGLDSDVARIEILGQF 288 RL +R ++ + E + + G Sbjct: 627 LRLERRRPQWGQRAF-RHQRIRVPSLDSEAAMRLAAALLRPVEYPPRTALETLARWTGGN 685 Query: 289 PQQEVNNF 296 PQ V+ Sbjct: 686 PQALVDLV 693 >gi|197303511|ref|ZP_03168550.1| hypothetical protein RUMLAC_02233 [Ruminococcus lactaris ATCC 29176] gi|197297509|gb|EDY32070.1| hypothetical protein RUMLAC_02233 [Ruminococcus lactaris ATCC 29176] Length = 542 Score = 46.1 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 36/319 (11%), Positives = 88/319 (27%), Gaps = 57/319 (17%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT-TLNAWMMLWLISTRPGMSII 111 WQ + + + S+ N T F + + +GK+ A + L + + + Sbjct: 59 PWQEQLIRDIFGIVKSDGNRQFRTAF---VEICKKVGKSELAAAIALYLLYADNEPSAEV 115 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A ++ Q + ++ + + M P +L A + G + + Sbjct: 116 YGAAADRQQASIVFDVARQMVEMSP--------ALMKRSKLMSATKRIVNYGNAGFYQVL 167 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII-NKSILGFFTELNPNRFWIMTSNT 230 + S+ H + DE P+ + + ++ N + T Sbjct: 168 SAEVGSK---------HGFSISGLVFDEIHTQPNRQLYDVLTKYSSDARQNPLHFII--T 216 Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI-------- 282 N F + + + + + +++ ++ Sbjct: 217 TAGNDRHSIAFELHTKAVDILEGRRVDPTFYPVVYGLKDDEDWEDEANWYKVNPSLGYTV 276 Query: 283 ------------------EILGQFPQ-----QEVNNFIPHNYIEEAMS-REAIDDLYAPL 318 EI ++ + ++IP + + Sbjct: 277 DIERLRDAYREAKQNPADEITFKWLRMNMWVSSTTSWIPDAIFMKGSEPIDMRLLEGRDC 336 Query: 319 IMGCDIAGEGGDKTVVVFR 337 G D++ G D T +V Sbjct: 337 YAGLDLSSTG-DITALVLI 354 >gi|225686604|ref|YP_002734576.1| type I site-specific deoxyribonuclease, HsdR family protein [Brucella melitensis ATCC 23457] gi|256043715|ref|ZP_05446638.1| type I site-specific deoxyribonuclease, HsdR family protein [Brucella melitensis bv. 1 str. Rev.1] gi|256111242|ref|ZP_05452273.1| type I site-specific deoxyribonuclease, HsdR family protein [Brucella melitensis bv. 3 str. Ether] gi|256262257|ref|ZP_05464789.1| HsdR [Brucella melitensis bv. 2 str. 63/9] gi|260564902|ref|ZP_05835387.1| HsdR protein [Brucella melitensis bv. 1 str. 16M] gi|265990137|ref|ZP_06102694.1| type I restriction modification enzyme [Brucella melitensis bv. 1 str. Rev.1] gi|265992755|ref|ZP_06105312.1| type I restriction modification enzyme [Brucella melitensis bv. 3 str. Ether] gi|225642709|gb|ACO02622.1| type I site-specific deoxyribonuclease, HsdR family protein [Brucella melitensis ATCC 23457] gi|260152545|gb|EEW87638.1| HsdR protein [Brucella melitensis bv. 1 str. 16M] gi|262763625|gb|EEZ09657.1| type I restriction modification enzyme [Brucella melitensis bv. 3 str. Ether] gi|263000806|gb|EEZ13496.1| type I restriction modification enzyme [Brucella melitensis bv. 1 str. Rev.1] gi|263091973|gb|EEZ16279.1| HsdR [Brucella melitensis bv. 2 str. 63/9] gi|326410994|gb|ADZ68058.1| type I site-specific deoxyribonuclease, HsdR family protein [Brucella melitensis M28] gi|326554285|gb|ADZ88924.1| type I site-specific deoxyribonuclease, HsdR family protein [Brucella melitensis M5-90] Length = 989 Score = 46.1 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 81/291 (27%), Gaps = 32/291 (10%) Query: 11 LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70 + L +L A + +NFV+ G + K L + Q AV Sbjct: 244 QDILLAGLLAPANLLDLIRNFVVFETIGGRRIKKLARYQQ--------FVAVGKAIERIR 295 Query: 71 NNSNPTIFKCAISAGRGIGKTTLNAWMM--LWLISTRPGMSIICIANSETQLKNTLWAEV 128 NP I +G GK+ ++ L + +I+ + + Sbjct: 296 TAPNPQRRGGVIHHTQGSGKSLTMVFLATKLRRLPEAENPTIVIVTDRTDLDDQIT---- 351 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR-TYSEERPDTFVGP 187 F+ + + L +++ + +T + P Sbjct: 352 ----------GQFQRSGFANPMQAESGDSLRKALSGGAGTTVLTTVHKFHSAVPKRSSVI 401 Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR--RLNGWFYDIFNIPL 245 + V DEA ++ PN I + T + + + F L Sbjct: 402 SKARNVFVMVDEAH---RTQYGALAARMRAGLPNACMIAFTGTPIDKKDRSTREAFGDYL 458 Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 + + + + E +R +D E+ FP+ + Sbjct: 459 HRY-LIDQAVKDGATVPIYY-EMRDARIRIDGRDFEREVRAAFPELSEDEI 507 >gi|255933656|ref|XP_002558207.1| Pc12g14010 [Penicillium chrysogenum Wisconsin 54-1255] gi|211582826|emb|CAP81028.1| Pc12g14010 [Penicillium chrysogenum Wisconsin 54-1255] Length = 2009 Score = 46.1 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 14/123 (11%), Positives = 32/123 (26%), Gaps = 10/123 (8%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + G GKT M W +PG ++ IA + ++ + + + + Sbjct: 1161 NVLLGSPTGSGKTVAAELAMWWAFREKPGSKVVYIAPMKALVRERVQDWRKRLTRQMGLK 1220 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 E+ + + + + + V D Sbjct: 1221 -LVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRDYV---------RKVSLVIID 1270 Query: 199 EAS 201 E Sbjct: 1271 EIH 1273 >gi|229604962|ref|YP_002875662.1| putative DNA maturase B [Vibrio phage VP93] gi|227977007|gb|ACP44109.1| putative DNA maturase B [Vibrio phage VP93] Length = 601 Score = 46.1 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 21/158 (13%), Positives = 40/158 (25%), Gaps = 19/158 (12%) Query: 28 FKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRG 87 FKNF + F + + + + A RG Sbjct: 6 FKNFEDFAY-------VGMRFLGFDL--TDMQADIAQYMQHGPRKKM-------VCAQRG 49 Query: 88 IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT---LWAEVSKWLSMLPHRHWFEMQ 144 K+TL A +W + ++ ++ E Q + + W + R Sbjct: 50 EAKSTLAALYSVWRLIQDQSTRVLIVSGGEKQASEVATLVIRLIETWDLLCWLRADPARG 109 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182 + + L+ S +R D Sbjct: 110 DRTSYEGYDVHCDLKPLEKAPSVACVGITAQLQGKRAD 147 >gi|169786958|ref|YP_001708770.1| hypothetical protein p3ABAYE0092 [Acinetobacter baumannii AYE] gi|293611291|ref|ZP_06693588.1| predicted protein [Acinetobacter sp. SH024] gi|169147119|emb|CAM84782.1| hypothetical protein p3ABAYE0092 [Acinetobacter baumannii AYE] gi|292826302|gb|EFF84670.1| predicted protein [Acinetobacter sp. SH024] Length = 177 Score = 46.1 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 20/148 (13%), Positives = 39/148 (26%), Gaps = 28/148 (18%) Query: 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI------ICIANSETQLKNTLWAEVSK 130 F+ A+ GR GKT L M ++ A + Q K W + + Sbjct: 36 RFRDAVC-GRRFGKTFLAKAEMRRAARLAAKWNVSVEDEIWYAAPTFKQAKRVFWKRLKQ 94 Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190 + +E S+ + S H D + + Sbjct: 95 AIPASW--------------RAGKPNEIECSITLRSGHIIRVVGL------DNYDDLRGS 134 Query: 191 HGMAVFNDEASGTPDIIN-KSILGFFTE 217 + DE + + + + + Sbjct: 135 GLFFLIIDEWADCKWVAWEEVLRPMLST 162 >gi|126433456|ref|YP_001069147.1| hypothetical protein Mjls_0847 [Mycobacterium sp. JLS] gi|126233256|gb|ABN96656.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length = 549 Score = 46.1 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 22/163 (13%), Positives = 44/163 (26%), Gaps = 6/163 (3%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 + +A+ H + + ++ + + + G G GKT L L G + + Sbjct: 198 EDASDALTEH-QAVILDAIRQLNRVEVRGGAGSGKTFLAMEQARRLAQR--GQRVALVCY 254 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 S L + L W + E +L + + + Sbjct: 255 S-HGLASYLERIAETWPRRQQPAYVGEFHALGVQWGAPEGPDEAVRTEETVRFWEHDLPL 313 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218 + H + DEA D +L + Sbjct: 314 QMADLAAQLEPGHRFDS--IVVDEAQDFADAWWDPLLAALRDP 354 >gi|146295099|ref|YP_001178870.1| type III restriction enzyme, res subunit [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145408675|gb|ABP65679.1| type III restriction enzyme, res subunit [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 899 Score = 46.1 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 56/185 (30%), Gaps = 34/185 (18%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P Q E + + ++ + + A GIGKT L A+ + ++ Sbjct: 288 PREAQTEALYWLKKCREEGLD-------RALVVAATGIGKTFLAAFDSIGF------KTV 334 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + +A+ E L+ + ++ + + Sbjct: 335 LFVAHREEILRQ------------------AALSFKTIRSNATIGFFTGDRKETEKDIIF 376 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 + +T +E + + + DE ++I+ +F P +T+ Sbjct: 377 ASVQTLGKEEYLNPTYFSSDYFEYIIIDEFHHAVAKSYQNIINYF---KPKFLLGLTATP 433 Query: 231 RRLNG 235 RL+ Sbjct: 434 ERLDN 438 >gi|41057249|ref|NP_958275.1| hypothetical protein VWBp33 [Streptomyces phage VWB] gi|39656072|gb|AAR29723.1| hypothetical protein [Streptomyces phage VWB] Length = 536 Score = 46.1 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 34/367 (9%), Positives = 79/367 (21%), Gaps = 57/367 (15%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML----------- 99 P + Q EF+ + I + +S RG GK+ + L Sbjct: 18 PTQEQAEFLLRFYEL---HPVTGRRVIHRGLLSRPRGWGKSPFVGAIALAEACADVVADG 74 Query: 100 WLISTRPGMS---------IICIANSETQLKNTLWAEVSKWL-SMLPHRHWFEMQSLSLH 149 W P + A +E Q NT + L + ++ ++ Sbjct: 75 WDAYGEPIGRPWHSVRTPLVRIAAVTEAQTDNTWIPLLEMARGGSLSTDYGLDVLDTVIY 134 Query: 150 PSGWYAELLEQSMGIDSKHYTITCRTYSEER-PDTFVGPHNTHGMAV--------FNDEA 200 + S E ++ G M + Sbjct: 135 LPRGEISPITSSASSVKGDPACFASLDQTEEWRESNGGIRLAKTMRFNAAKLGGSIIETP 194 Query: 201 SGTPDIINKSILGFFTE--------LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW---- 248 + + + + + + Sbjct: 195 NAFTPGEGSVAENSAADYQAIIDGRSRARGILVDHREAPGDTDMSDEQSLVAGLRYAYGD 254 Query: 249 ---KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF---PQQEVNNFIPHNYI 302 ++ D+ ++ F + ++ + Sbjct: 255 SSDHPDGCVLHDPPCGPGWSPIERLTGEFWDTSNDPQDLRADFLNQITHASDAWLSQPEV 314 Query: 303 EEAMSREAIDDLYAPLIMGCDIAGEGG----DKTVV--VFRRGNIIEHIFDWSAKLIQET 356 + + +++G D + + D T + + + W E Sbjct: 315 RASSDLGKVVQPGDRIVLGFDGSRKRSRGVTDATALIGCRLSDGHLFTLGVWEQPPRLEL 374 Query: 357 NQEGCPV 363 +G PV Sbjct: 375 GPDGRPV 381 >gi|209542742|ref|YP_002274971.1| Terminase [Gluconacetobacter diazotrophicus PAl 5] gi|209530419|gb|ACI50356.1| Terminase [Gluconacetobacter diazotrophicus PAl 5] Length = 584 Score = 46.1 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 40/335 (11%), Positives = 86/335 (25%), Gaps = 54/335 (16%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFK---CAISAGRGIGKTTLNAWMMLWLISTRP-- 106 WQL + + ++N N F+ ++ RG KT AW L+++ Sbjct: 87 EDWQLWYFSQLLGWKNANGRNKGKRRFRKGSLWVA--RGNNKTGAGAWFCLYMLLCDGEW 144 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 + + Q + + + + P F+ ++ + Sbjct: 145 DPQVYSVGVDRDQASH-TFKAAANQIETNPK--LFKALGAQVYSKFIKGIQNYKG-ENKL 200 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226 + R S+ + F DE PD + ++ + + Sbjct: 201 GVFKALARGASKMN--------GLNIHFAFLDELHAYPDRLTYDVIVSGAKKRDQSLVLA 252 Query: 227 TSNTR---RLNGWFYDIF-------NIPLEDWKRYQIDT--------------------R 256 S G+ + +D + + Sbjct: 253 ASTAGLNLDSFGYEDYCYARSVLRQEFDQQDEQFFSCVWEADEGDDPYSEATWEKANPCW 312 Query: 257 TVEGIDSGFHEGIISRYGLDS--DVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314 F S + S + L Q+ ++ + ++ + +D Sbjct: 313 NSAIDQLSFRAEAASAKRIPSKRREFFTKNLNQWL-SSGTTWLDMDAVKACYDPDIEEDD 371 Query: 315 YAPL-IMGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348 I G D+ G D V N I+ + Sbjct: 372 DYDFGITGIDL-GSRSDLCVYTNVFVNTIDEQLHY 405 >gi|15830852|ref|NP_309625.1| terminase large subunit [Escherichia coli O157:H7 str. Sakai] gi|168762543|ref|ZP_02787550.1| putative phage terminase, large subunit [Escherichia coli O157:H7 str. EC4501] gi|217328566|ref|ZP_03444648.1| putative phage terminase, large subunit [Escherichia coli O157:H7 str. TW14588] gi|13361062|dbj|BAB35021.1| putative terminase large subunit [Escherichia coli O157:H7 str. Sakai] gi|189367154|gb|EDU85570.1| putative phage terminase, large subunit [Escherichia coli O157:H7 str. EC4501] gi|217318993|gb|EEC27419.1| putative phage terminase, large subunit [Escherichia coli O157:H7 str. TW14588] Length = 553 Score = 46.1 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 33/261 (12%), Positives = 56/261 (21%), Gaps = 27/261 (10%) Query: 23 ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82 E V F F +KG + WQ + T + Sbjct: 43 EVVERFIAFSRV--CPHVKGPMRGRPIELEPWQQFAFACILGFKVKATGRRKYTSAFIEV 100 Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 R K+T A + W + G I A ++ + + Sbjct: 101 --PRKNAKSTTAAILANWFLIMENGQQDIYTAAVSRDQARIVFDDARQMC--------LL 150 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 + L + +++ K T P DE Sbjct: 151 SRPLRRRVNIQAHKVIHPKSNSLLKPLAAKAATIEGTTPS-----------LAIVDEYHL 199 Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262 PD S L P + + D+ +D V Sbjct: 200 HPDNGVYSALELGMGARPEGLLFAITTSGSNVVSACKQHY----DYCCQILDGEEVNESM 255 Query: 263 SGFHEGIISRYGLDSDVARIE 283 + +D I+ Sbjct: 256 FVLIYELDDESEVDDPAMWIK 276 >gi|218437327|ref|YP_002375656.1| DSH domain protein [Cyanothece sp. PCC 7424] gi|218170055|gb|ACK68788.1| DSH domain protein [Cyanothece sp. PCC 7424] Length = 1003 Score = 46.1 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 25/192 (13%), Positives = 46/192 (23%), Gaps = 20/192 (10%) Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 + + + A G GKT L ++ R G + Sbjct: 21 DQFQKDAIAALDKGKSVVVCAPTGSGKT-LVGEYAIYRALYR-GKRVFYTTP-------- 70 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 L A ++ + F +P + + D+ +T + +T Sbjct: 71 LKALSNQKCRDFQEK--FGQTPFLDYPVNVGLITGDIVINPDAPIVVMTTEIFRNMLYET 128 Query: 184 FVGPHN---THGMAVFNDEASGTPDI-----INKSILGFFTELNPNRFWIMTSNTRRLNG 235 +G V DE D +SI+ + N L Sbjct: 129 PIGEVGTSLEDVETVVLDECHYISDSGRGTVWEESIIYCPPSIQLVALSATIGNPEELTD 188 Query: 236 WFYDIFNIPLED 247 W + Sbjct: 189 WINQVRMSTRNR 200 >gi|225683146|gb|EEH21430.1| activating signal cointegrator 1 complex subunit 3 [Paracoccidioides brasiliensis Pb03] Length = 2011 Score = 46.1 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 29/125 (23%), Gaps = 14/125 (11%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + G GKT M W RPG ++ IA + ++ V W L Sbjct: 1158 NVLLGSPTGSGKTVAAELAMWWAFRERPGSKVVYIAPMKALVRER----VHDWKRRLTVP 1213 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN--THGMAVF 196 ++ L I + V Sbjct: 1214 MGLKLVEL--------TGDNTPDTKTIRDSDIIITTPEKWDGISRSWQTRGYVRQVSLVI 1265 Query: 197 NDEAS 201 DE Sbjct: 1266 IDEIH 1270 >gi|257413762|ref|ZP_04744154.2| prophage LambdaCh01, terminase, large subunit, PBSX family [Roseburia intestinalis L1-82] gi|257202370|gb|EEV00655.1| prophage LambdaCh01, terminase, large subunit, PBSX family [Roseburia intestinalis L1-82] Length = 644 Score = 46.1 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 38/293 (12%), Positives = 72/293 (24%), Gaps = 44/293 (15%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 GRG K+ + I P I+ + L+ +++ + K + ++ Sbjct: 240 KGGRGSIKSNFWGDLAYETIRQDPQAHIVYTRRYKVDLRGSVYNQFMKTVIRYNDLDNWD 299 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF---NDE 199 + + T+ + + + DE Sbjct: 300 FKQSPM------------CAVYKPTGQTVMFVGADKPISLKSFNVPFGYVKLLIHEECDE 347 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG-----WFYDIFNIPLEDWKRYQID 254 +G +I F + I N + + + N P Sbjct: 348 MAGV--EQMDNIEDTFLRSDTPALDIKIFNPPKSKNNFMNQYVEECRNKPQTRICHSYYY 405 Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314 V+ + F E R LG+ F + +EE +A + Sbjct: 406 NVPVKWLGKRFFERAEWFKVHKPLYYRNNYLGEVTGTGGGIF---DNVEERTITDAEIEN 462 Query: 315 YAPLIMGCD----------IAGEGGD-------KTVVVFRRGNIIE--HIFDW 348 L G D +A D V R N I ++ Sbjct: 463 LPFLYYGLDFGFEHPQTFEVAYYDEDTDTLYCVSEVFAKRCKNSAFARKIKEY 515 >gi|218508777|ref|ZP_03506655.1| putative phage terminase large subunit [Rhizobium etli Brasil 5] Length = 412 Score = 46.1 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 19/165 (11%), Positives = 44/165 (26%), Gaps = 16/165 (9%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 + R +G TT ML + IA++ + +V LP Sbjct: 55 VLLKARQLGLTTFIQIFMLDACVFNRDIRAGTIAHTLADAQTIFRDKVKYPFDNLPDG-- 112 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + + + + + + + + T H + + Sbjct: 113 -------IRAAVPIVKDNQSELLLANNSSIRVGTSLR---SGTLQYLHVSEYGKL----C 158 Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL 245 + P+ + G + + + S G FY++ Sbjct: 159 AKYPEKAREVRTGALNTVQAGQLVFIESTAEGQEGHFYNLCEDAQ 203 >gi|91226790|ref|ZP_01261443.1| ATP-dependent RNA helicase SrmB [Vibrio alginolyticus 12G01] gi|91188921|gb|EAS75205.1| ATP-dependent RNA helicase SrmB [Vibrio alginolyticus 12G01] Length = 407 Score = 46.1 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 45/318 (14%), Positives = 85/318 (26%), Gaps = 50/318 (15%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 + + +P + Q E + SA G GKT L Sbjct: 16 EAIEEMGYERPTKIQAEAIPQALDG------------RDILASAPTGTGKTAAFVLPALQ 63 Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 + P I+ + + A+ ++ L+ + F + + Sbjct: 64 YLQDFPRRKPGPARILILTPTRELAMQI--ADQARALAKNTKLNIFTITGGVQYQEHADI 121 Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 Q + + + + DEA D+ + Sbjct: 122 LATTQDI--------VVATPGRLKEYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRL 173 Query: 216 TELNPNRFWIMTSNTR----RLNGWFYDIFNIP---------LEDWKRYQIDTR-TVEGI 261 + R + + + G+ D+ N P E K Q R Sbjct: 174 SNECRWRKQTLLFSATLEGKGVEGFTADLLNDPAEIDAKSPLRERKKIAQWYHRADDAEH 233 Query: 262 DSGFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AID 312 + II++ + V E L + Q + IP ++I E R Sbjct: 234 KLELLKHIITQQAERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFR 293 Query: 313 DLYAPLIMGCDIAGEGGD 330 D +++ D+A G D Sbjct: 294 DGTVNVLLATDVAARGID 311 >gi|170695979|ref|ZP_02887118.1| Terminase [Burkholderia graminis C4D1M] gi|170139163|gb|EDT07352.1| Terminase [Burkholderia graminis C4D1M] Length = 603 Score = 46.1 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 26/227 (11%), Positives = 58/227 (25%), Gaps = 20/227 (8%) Query: 20 MHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFK 79 + E +F E F WQ + ++ + + + Sbjct: 55 WNPEIGQRVIDFFPDVLCLNGGEFEGEPF-HLLDWQKFIVGSLFGWLREDGSRRFREAY- 112 Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSI-ICIANSETQLKNTLWAEVSKWLSMLPHR 138 + G+G GK+ L A + L+++ + A + L+ + + + P Sbjct: 113 --VEGGKGCGKSPLAAGIGLYMMLADNEQRAEVYAAATRRDQAMVLFRDAVAMVQLSPRL 170 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + + S+E + PH D Sbjct: 171 REATTTQGR---------DDRVWNIGHRRSGSFFRPIASDESGQSGPRPH-----CGLID 216 Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNT-RRLNGWFYDIFNIP 244 E + +I+ + M +N+ Y+ Sbjct: 217 EIHEHRNGTVINIMRAGKKGRRQPLIFMITNSGFDRTSVCYEQHEYA 263 >gi|218704209|ref|YP_002411728.1| putative Terminase, ATPase subunit from bacteriophage origin [Escherichia coli UMN026] gi|218431306|emb|CAR12184.1| Putative Terminase, ATPase subunit from bacteriophage origin [Escherichia coli UMN026] Length = 591 Score = 46.1 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 38/321 (11%), Positives = 81/321 (25%), Gaps = 34/321 (10%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 W E + H N+ I R IG T A+ I Sbjct: 140 DTWADEHLFEYQKHLRRNIGQQVRN-----ILKSRQIGATWYFAFEAFENAVMTGDPQIF 194 Query: 112 CIANSET----QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 A+ + AE +++ + + S S + Sbjct: 195 LSASKVQAEYFRSYIVNIAEQYFGITLTGNPIRLSNGAELRFLSTNKNTAQSYSGHLYCD 254 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227 Y + + H+ F+ ++ T + + + R Sbjct: 255 EYFWVPNFARLNEVASAMATHDKWRTTYFSTPSAKTHQAYPFWTGEEWKQGSKKRAAARF 314 Query: 228 SNTRRLNGWFYDIFNIPLEDWK-RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 + + P W+ ++ G + E + +RY ++ + + Sbjct: 315 PSFDEMRNGGRLC---PDGQWRYVITMEDAIAGGFNLANIEKLRNRY--NTATFNMLYMC 369 Query: 287 QFPQQEVNNFIPHNYIEEA-----MSREAIDDLYAPL----IMG-CDIAGEGGDKTVVVF 336 F ++ + +E ++ D P + G D A G D + V Sbjct: 370 VFVD-SKDSVFSFSDLEACGVEVDTWQDHNPDAARPFGDRPVWGGFDPARSG-DLSCFVI 427 Query: 337 RRGN-------IIEHIFDWSA 350 + + +W Sbjct: 428 IAPPMYAAEKFRVLKVINWKG 448 >gi|120610299|ref|YP_969977.1| phage terminase [Acidovorax citrulli AAC00-1] gi|120588763|gb|ABM32203.1| phage Terminase [Acidovorax citrulli AAC00-1] Length = 563 Score = 46.1 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 39/325 (12%), Positives = 84/325 (25%), Gaps = 61/325 (18%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI-I 111 WQ + ++ + + I G+G GK+ L A + L+ ++ + Sbjct: 54 PWQAFVVGSIFGWYTQDGFRRFSIAY---IETGKGSGKSPLAAGIGLYGLTADGEQRAEV 110 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A ++ L+ + +++ P M L SG ++ + + Sbjct: 111 YAAATKRDQAQILFRDAVSMVNLSP------MLQSRLVQSGRDEKVWNLFYPATNGFFRT 164 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 + G DE ++ + +M +N+ Sbjct: 165 IA---------SDEGQSGPRPHIGLIDEVHEHTTSTVVEMMLAGRKSRRRALVLMITNSG 215 Query: 232 RLNGWFYDIFN------------------------IPLEDWKRYQIDTRTVEGIDSGFHE 267 ++ + +K + +D H Sbjct: 216 SDLNTVCGQYHELGIKVCRGELVNDAIFAFICALDEGEDPFKDEACWAKVNPSLDYKAHG 275 Query: 268 GIISRYGL---------------DSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR-EAI 311 G V R Q+ Q + +I + ++A R Sbjct: 276 QTDGIPGRRYLREQVHTARGVPAKEAVVRRLNFCQW-TQAESPWIGWDVWKDAQERVPLS 334 Query: 312 DDLYAPLIMGCDIAGEGGDKTVVVF 336 P + G D++ D T V Sbjct: 335 LLRNRPAVAGLDLSST-TDLTAFVL 358 >gi|312374861|gb|EFR22335.1| hypothetical protein AND_15413 [Anopheles darlingi] Length = 1046 Score = 46.1 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 19/160 (11%), Positives = 51/160 (31%), Gaps = 15/160 (9%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + + +++AGRG GK+ + + +++ + Sbjct: 255 QAKAVAQFIDALAEKQLKPP-----TSLTAGRGRGKSA-AMGLAIAGSIAFGYVNVYVTS 308 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 S L L+ + K L ++ + + + ++ ++ +++ Sbjct: 309 PSPENLIT-LFEFILKGFDALEYQEHTDYTIIRSTNPDFNKAIIRINITRNNRQTIQYIS 367 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF 214 + + DEA+ P + K++LG Sbjct: 368 PTDAHLLNAAD--------LLIIDEAAAIPLPMVKAMLGS 399 >gi|48696639|ref|YP_024418.1| terminase [Vibrio phage VP2] gi|48696683|ref|YP_024977.1| hypothetical protein VP5_gp02 [Vibrio phage VP5] gi|40806146|gb|AAR92064.1| hypothetical protein [Vibrio phage VP5] gi|40950037|gb|AAR97628.1| terminase [Vibrio phage VP2] Length = 568 Score = 46.1 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 32/228 (14%), Positives = 62/228 (27%), Gaps = 38/228 (16%) Query: 51 PHRWQLE----FMEAVDVHCHSNV---------NNSNPTIFKCAISA-GRGIGKTTLNAW 96 P +Q E + N P+ K AI R GK + A Sbjct: 43 PRGYQEEAYDHILSEHLDFARRKNEALNKGEEFNEPEPSWRKKAIQVLHRRAGKD-IGAL 101 Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156 ++ + S + I +TQ ++ +W + + + + E Sbjct: 102 HLIAIASQLRVGNYKHILPYKTQARDAIWDGIDALGNRFIR-------------NAFPDE 148 Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT 216 ++E TY + D+ + + E++ + + Sbjct: 149 IVESINESRMLVRFTNGSTYQLQGGDSDKLV-GAGPVGIVYSESALMSPNVRTFLRPML- 206 Query: 217 ELNPNRFWIMTSNTRRLNGWFYD--IFNIPLEDWK----RYQIDTRTV 258 + W + T R WFY + E+W R Sbjct: 207 --DETGGWELHITTPRGKNWFYKLAMHAEKSEEWYYKYLTINDTWRWA 252 >gi|46205020|ref|ZP_00209667.1| COG0495: Leucyl-tRNA synthetase [Magnetospirillum magnetotacticum MS-1] Length = 231 Score = 46.1 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 60/231 (25%), Gaps = 29/231 (12%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTR------PG 107 QL +EA +H P + A+ GRG GKT A + L P Sbjct: 12 QLRLLEADWLHRARADQLPPPGHWTTWAVIGGRGSGKTRTGAEWVRGLALGDPVFTDAPV 71 Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 I I + +++ + S L++ G + + S + Sbjct: 72 GRIALIGETFADVRDVMIEGPSGLLALPRL--------------GGAVPVWQPSRR---R 114 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRFWI 225 + A ++DE + + I R + Sbjct: 115 VVFGNGAVALAFSAEEPDSLRGPQFGAAWSDEVAKWREAEAAYDMIQFGLRLGRHPRGLV 174 Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLD 276 T R + P + + F E ++ RY Sbjct: 175 T--TTPRPVPLIRRLLADPRT-VVTRSRTADNADNLAPLFLEEVVGRYAGT 222 >gi|319642230|ref|ZP_07996889.1| terminase large subunit [Bacteroides sp. 3_1_40A] gi|317386086|gb|EFV67006.1| terminase large subunit [Bacteroides sp. 3_1_40A] Length = 482 Score = 46.1 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 33/280 (11%), Positives = 76/280 (27%), Gaps = 12/280 (4%) Query: 58 FMEAVDV-HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 F++ V + S I++ A+S GK+ +++ + W++ P S++ Sbjct: 48 FLKKVAEAFMRVYESYSAGIIYRLAVSMPPRAGKSYISSLFIAWMLGHFPEESVM----- 102 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 +TL+ ++S + F ++ G + ++ + Sbjct: 103 RNCCSDTLYNKLSYDARDIVKSKRFHEIFPDIYLKGDKQNVKSWNVEGARQVSYFGGGVG 162 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP---NRFWIMTSNTRRL 233 T + ++A + T + N I Sbjct: 163 GTVIGFGASMLAMTDDLYKSLEDALSDNNNEKVWSWKQGTHDSRIEGNCCLIDIGTRWSA 222 Query: 234 NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF---PQ 290 N + + E L S+ + ++ P Sbjct: 223 NDVLGRLEEAGKYNEIIRIAALDENERSFCEDVHTTEYYLELRSETDESIWMAEYMQEPF 282 Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGD 330 + P + + + +I CD A +G D Sbjct: 283 EAKGLLFPKSSLMRFKLADIAGKRPDGVIGACDTADKGDD 322 >gi|238926382|ref|ZP_04658142.1| conserved hypothetical protein [Selenomonas flueggei ATCC 43531] gi|238885786|gb|EEQ49424.1| conserved hypothetical protein [Selenomonas flueggei ATCC 43531] Length = 760 Score = 46.1 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 27/196 (13%), Positives = 63/196 (32%), Gaps = 16/196 (8%) Query: 43 KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102 P + P+R QL+ + A+D N + + G GKT + +L Sbjct: 17 LPGSNTRHPYRHQLDALCALDRMDEENA------SYSTLVVLPTGGGKTYTASTWLLRHA 70 Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162 + I+ +A+ + L + ++ + S + + ++++ Sbjct: 71 LDKK-KKILWLAH-----RQMLLDQAAESFQKFAYTAEIPHISSFRYRIVSGSSNHDKTI 124 Query: 163 GIDSKHYTITCRTYSEERPDTFVG----PHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218 ID K + S R + + + DEA + + ++ + + Sbjct: 125 NIDPKDDLLIISKDSIGRASNLARLAPWLAGENEIFLIVDEAHHSTAKTYRRVIDYVKDK 184 Query: 219 NPNRFWIMTSNTRRLN 234 + I + T Sbjct: 185 VEHVKLIGLTATPFRT 200 >gi|168009604|ref|XP_001757495.1| predicted protein [Physcomitrella patens subsp. patens] gi|162691189|gb|EDQ77552.1| predicted protein [Physcomitrella patens subsp. patens] Length = 2180 Score = 46.1 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 42/152 (27%), Gaps = 15/152 (9%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFK----CAISAGRGIGKTTLNAWMMLWLISTRP-GMSII 111 E + H + P ++ ++A G GKT + +L ++ G + Sbjct: 1348 EVLYQKFRHFNPIQTQVFPVLYNTDDNVLVAAPTGSGKTICAEFAVLRMLQKGEAGGRCV 1407 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 IA E K L SK+ L R + + S + + + Sbjct: 1408 YIAPVEALAKERLRDWESKFGRTLGVRVVELTGETATDMKLLEKGQIIIS---TPERWDV 1464 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 R + H DE Sbjct: 1465 LSRRWK-------QRKHVQQVSLFVVDELHLI 1489 >gi|301386048|ref|ZP_07234466.1| hypothetical protein PsyrptM_25573 [Pseudomonas syringae pv. tomato Max13] gi|302060830|ref|ZP_07252371.1| hypothetical protein PsyrptK_12639 [Pseudomonas syringae pv. tomato K40] gi|302129770|ref|ZP_07255760.1| hypothetical protein PsyrptN_00140 [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 684 Score = 46.1 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 32/295 (10%), Positives = 65/295 (22%), Gaps = 28/295 (9%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA--NSETQLKNTLWAEVSKWLSM-LPHR 138 I R +G T A + A ++ + A W + L Sbjct: 177 ILKSRQVGLTYYFAGEAFMDAVLTGDNQVFLSASRAQSEIFRSYIIAFAQAWFGLELTGN 236 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT----CRTYSEERPDTFVGPHNTHGMA 194 + + + H + R + + + Sbjct: 237 PIVLSKDGKPWAELRFLSTNSSTAQGHHGHVYVDEYFWIRDFEKLNTVASAMATHKKWRK 296 Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254 + S G + + + + P W++ Sbjct: 297 TYFSTPSAVSHQAYPFWQGEKFRNSKRK---AAKDPWPSDKQISAGALCPDGQWRKVITI 353 Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR------ 308 + G F + D D + + +F + F +E S Sbjct: 354 LDAIAGGCDLFDLEQLQLEYDD-DKFQQLFMCKFIDSSQSAF-SLADLERCYSDLSLWAD 411 Query: 309 ----EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGN------IIEHIFDWSAKLI 353 + +P+ +G D + D T VV I W + Sbjct: 412 FDPDDPRPYGNSPVWIGYDPSRTRDDATCVVIAPPLENGGKFRILEKHSWRGQSF 466 >gi|295839099|ref|ZP_06826032.1| phage terminase, large subunit [Streptomyces sp. SPB74] gi|295827320|gb|EDY42481.2| phage terminase, large subunit [Streptomyces sp. SPB74] Length = 592 Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 67/278 (24%), Gaps = 31/278 (11%) Query: 51 PHRWQ-LEFMEAVD--VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR-- 105 P WQ + + VH I + + R GKTTL + L+++ Sbjct: 95 PDPWQVAYILAPIFGWVHWDDGAGMYVRIIREAYVDVPRKNGKTTLGGGIALYMMGGDGE 154 Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 PG +I A ++ Q + L+ V + P S + Sbjct: 155 PGAQVITAAVTKEQAR-LLYGPVKAIVEKSPALSRVMQPLASAILHPKTDSYFKP----- 208 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPNRFW 224 H + DE + ++I + Sbjct: 209 --------------VSSLAGAQHGLNLHCGLVDELHEHKTPELVETIESGTGSRRQPLIF 254 Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 I+ T G ++ E ++ + + + Sbjct: 255 II---TTADAGKRESVYQRKRERVEQLARGAYRAPSVYGVVFAAEKDDDPFAEETWKKAN 311 Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGC 322 G E+A A + L +G Sbjct: 312 PG--YGVSPTRAYLRTAAEKAQQSPAELASFLRLHLGI 347 >gi|239621737|ref|ZP_04664768.1| phage protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514928|gb|EEQ54795.1| phage protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 470 Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 37/333 (11%), Positives = 82/333 (24%), Gaps = 52/333 (15%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P +WQ +E ++ R GK + + L+L + GM I Sbjct: 19 PDKWQRIVLEGWLATDSKLQWAASDCGCAV----PRQNGKNAILEFTELYLAAIL-GMKI 73 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + A+ + + + + + ++ ++ Sbjct: 74 LHTAHEVKTCRKHFLR-MKYYFENARKFPELAELVTYIRATNGQEAIVLKN----GGSIE 128 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN- 229 R+ S + DEA D ++I + + + Sbjct: 129 FIARSKSSG--------RGFTVDVLVCDEAQELTDEQMEAIQPAISSAPSGNPLTIYTGT 180 Query: 230 ----------------------TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267 + WF + + + R + + + Sbjct: 181 PTPPTSPGTVFARMRRNAHRDKPPKNLCWFEWAATEIGDVHDQQRW-YRYNPSLGTRLLK 239 Query: 268 GII--SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325 ++ + D E LG + Q + E A + + + Sbjct: 240 SVVVSESEKMTPDGFARERLGWWNDQA-GALSDIDVDEWAKCKTDKPCMDGYNSYAVKFS 298 Query: 326 GEGGDKT-VVVFR------RGNIIEHIFDWSAK 351 +G + T V R +E I S + Sbjct: 299 ADGANVTLVACVRPPRKSSELPHVEVIASRSMR 331 >gi|308808280|ref|XP_003081450.1| putative RNA helicase [Oryza sativa (ISS) [Ostreococcus tauri] gi|116059913|emb|CAL55972.1| putative RNA helicase [Oryza sativa (ISS) [Ostreococcus tauri] Length = 734 Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 33/315 (10%), Positives = 70/315 (22%), Gaps = 51/315 (16%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGR--------GIGKTTLNAWMMLWLISTRPG 107 E + + + + +GR G GKT L I ++P Sbjct: 332 KELLRVTANFQKPSPIQAQSWP---IVMSGRDMVGIAATGSGKTLAFGMPALTQIRSQPP 388 Query: 108 MS-----IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162 + +A + + T R + + +M Sbjct: 389 CKPGQPICLVLAPTRELAQQTA-KVFDDAGEASGVRCVCVYGGAPKYEQ-------KNAM 440 Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS---ILGFFTELN 219 I + DEA D+ + + T + Sbjct: 441 KAGGGAAVIVATPGRLRDFMEEGVIKLDRVTMLVLDEADRMLDLGFEPEIRAIAGATRAD 500 Query: 220 PNRFWIMTSNTRRLNGWFYDIF-----------NIPLEDWKRYQIDTRTVEGIDSGFHEG 268 + + + + ++ + D Sbjct: 501 RQTVMFSATWPMSVQSLASEFMCNPVRVRIGSEGLKASQSITQIVEVVEPQDKDRHLARV 560 Query: 269 IISRYGLDSDVARIEILGQFPQQEVN-----------NFIPHNYIEEAMSREAI--DDLY 315 + G D R I G + ++ N I + + R Sbjct: 561 MKQYLGSPKDCPRTLIFGLYKKECANLHQRLSREWPAVCIHGDMSQADRERSVEAFKKGT 620 Query: 316 APLIMGCDIAGEGGD 330 + +++ D+A G D Sbjct: 621 SRILIATDVAARGLD 635 >gi|21673961|ref|NP_662026.1| ATP-dependent RNA helicase SrmB, putative [Chlorobium tepidum TLS] gi|21647103|gb|AAM72368.1| CRISPR-associated helicase Cas3 [Chlorobium tepidum TLS] Length = 668 Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 61/231 (26%), Gaps = 17/231 (7%) Query: 8 DQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCH 67 + + + + A F + G P+ + E + C Sbjct: 117 NPETSELRPNGVDLAMLKERFDQHMSLK-ESGASDTPVNRA------RKEILRE----CR 165 Query: 68 SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127 + P +F + G GKT + L II + + ++ T Sbjct: 166 QKGVSLEPGLFSLTV--PTGGGKTLASMAFALEHALKHDKKRIIVVIPYTSIIEQTAAVY 223 Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187 + H + P+ A + I + + + R Sbjct: 224 REVFGDDAVLEHHSNLDPSRETPASRLATENWDAPIIVTTNVQFFESLF-AARSSACRKL 282 Query: 188 HNTHGMAVFNDEASGTPDIINKSI---LGFFTELNPNRFWIMTSNTRRLNG 235 HN V DEA P + I + + + T+ L+G Sbjct: 283 HNIVNSVVVLDEAQMLPTDFLQPIVSVIKMLSAHFRTSVVLCTATQPVLSG 333 >gi|157693524|ref|YP_001487986.1| terminase large subunit [Bacillus pumilus SAFR-032] gi|157682282|gb|ABV63426.1| terminase large subunit [Bacillus pumilus SAFR-032] Length = 437 Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 76/265 (28%), Gaps = 39/265 (14%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + G G K+ A ++ L + + I + + ++ + + +S L H Sbjct: 27 LVGGYGSSKSYHIALKLI-LKLLEEKRTALVIREVYDTHRESTFSLLQEIVSDLGIDHVV 85 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + +S L ++ + + E + ++ +E S Sbjct: 86 KCRSSPL------------ALTFRNGSSILFKGLDKPE-----KLKSINNISIIWIEECS 128 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL---------------- 245 K +LG + + ++++N + W Y F Sbjct: 129 EVSYEGFKELLGRLRHPSLPLYMMLSTNPVGQDNWTYRHFFRDEQLKRFVLDDETLYKKR 188 Query: 246 ----EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301 +D + + + + + D D+ RI G F F Sbjct: 189 TVVIKDTYYHHSTAEDNLFLPKSYVKQLDELKEYDPDLYRIARKGYFGINGTKVFPQFEV 248 Query: 302 IEEAMSREAIDDLYAPL-IMGCDIA 325 A EAI + PL G D Sbjct: 249 RNHADVLEAIQQMDRPLKRAGMDFG 273 >gi|228947364|ref|ZP_04109656.1| Terminase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228812305|gb|EEM58634.1| Terminase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 488 Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 55/189 (29%), Gaps = 26/189 (13%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL--ISTRPGMS 109 WQ F+ A H ++ R GK+TL++ + L+L G Sbjct: 106 ELWQQAFLAATFGFVHKIDGTRKYREAFLVVA--RKNGKSTLSSGICLYLQVADGEGGSE 163 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 + +A E Q K +W+E + + P +LS EL K Sbjct: 164 VYAVATKEQQAK-IVWSESKRMVKKSP--------ALSKRIKTLVKELTADFNDSVLKPV 214 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK--SILGFFTELNPNRFWIMT 227 T H DE D + G P I T Sbjct: 215 GSDSDTLDGLN------VHGAS-----LDEIHAWKDKNLYDVIVDGTSAREQPLILMITT 263 Query: 228 SNTRRLNGW 236 + T R + + Sbjct: 264 AGTVRESVY 272 >gi|325661335|ref|ZP_08149961.1| hypothetical protein HMPREF0490_00694 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472284|gb|EGC75496.1| hypothetical protein HMPREF0490_00694 [Lachnospiraceae bacterium 4_1_37FAA] Length = 447 Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 25/208 (12%), Positives = 58/208 (27%), Gaps = 24/208 (11%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 I A R K+ + A +PG I+ + + Q K + ++ L Sbjct: 72 VCIVACRAASKSFIIALYACCKAIIKPGSKIVLGSATRGQSKLIISEKIKNEL------- 124 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 ++ S ++ ++ + + +E Sbjct: 125 --------MNMSPALRREIKDIKDSANESIVYFRNGSTIKVFTANEFARGLRSTDAVREE 176 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 I+ S++ F + F I FY+ ED K I + ++ Sbjct: 177 FRQIDKNIDDSVISPFQTIRQAPFMI---------DPFYEGIECLKEDPKDIYISSSWLD 227 Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQ 287 ++ + + +D + + Sbjct: 228 DGHWMWNLVDQAYTDMLNDRPSVMLAFD 255 >gi|325095254|gb|EGC48564.1| DEAD/DEAH box helicase [Ajellomyces capsulatus H88] Length = 1824 Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 21/215 (9%), Positives = 62/215 (28%), Gaps = 22/215 (10%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +P +WQ E ++ +D + + A GKT ++ + M ++ Sbjct: 759 EPDKWQREVLDEIDAN------------RSLFVVAPTSAGKTFISFYAMKKILEEDYNSV 806 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ +A ++ + +++ H ++H + + + + Sbjct: 807 LVYVAPTKALVSQVAAEIQARFSKSFKHGGMSVW---AIHTRDYRINNPTGCQILVTVPH 863 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN---RFWIM 226 + + +++ + + DE + + + L P Sbjct: 864 ILQIMLLAPANANSW----SPRVKRIIFDEIHCIGQVDDGVVWEQLLLLAPCPVIALSAT 919 Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI 261 N + + W D + R + Sbjct: 920 VGNPQEFSNWLRMTQMENGIDLTTIEHRHRYSDLR 954 >gi|255280370|ref|ZP_05344925.1| CRISPR-associated helicase Cas3 domain protein [Bryantella formatexigens DSM 14469] gi|255268835|gb|EET62040.1| CRISPR-associated helicase Cas3 domain protein [Bryantella formatexigens DSM 14469] Length = 715 Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 18/176 (10%), Positives = 45/176 (25%), Gaps = 10/176 (5%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + HC +F+ + G GKT + L +I + + + Sbjct: 218 EILKHCMEMGEADKG-LFRLTV--PTGGGKTIASLAFALKHAEKHHMERVIYVIPYTSII 274 Query: 121 KN--TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 + ++AE+ ++L + + + + + Sbjct: 275 EQNAKVFAEILGRENVLENHCNIDYELDEE-LRPMQLAAENWDKPVIVTTNVQFFESLFS 333 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDI----INKSILGFFTELNPNRFWIMTSNT 230 + HN + DEA P+ ++ + + Sbjct: 334 NKSSRCRKLHNMANSVIIFDEAQMLPNDYLKPCIAAMEQLLRYYRSSIVLCTATQP 389 >gi|269836053|ref|YP_003318281.1| hypothetical protein Sthe_0020 [Sphaerobacter thermophilus DSM 20745] gi|269785316|gb|ACZ37459.1| conserved hypothetical protein [Sphaerobacter thermophilus DSM 20745] Length = 497 Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 47/348 (13%), Positives = 77/348 (22%), Gaps = 69/348 (19%) Query: 26 LSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAG 85 F FP +P R+Q E M AV + I Sbjct: 15 ADPVAFARALFP----------SRRPRRYQAEPMRAVAAAVVARARGDRSHPADFGIVFS 64 Query: 86 RGIGKTTLNAWMMLWL--ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 R GK A ++ +L + R G SI+ + L + Sbjct: 65 RQAGKDEALAQLIAYLLTLFQRAGGSIVVALPT------------------LRPQGILAR 106 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV-GPHNTHGMAVFN-DEAS 201 L + A L + R + +E Sbjct: 107 DRLIERLTCERARALGLRPRVQDGTIVRLGRAACHFVSAGPQSNARGQTASLLLVANECQ 166 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL-----EDWKRYQIDT- 255 S+ M + + ++ + +++ Sbjct: 167 DIRPERWDSVFAPMAASTDAVTLSMGTVWTADTLLARQMRHLAALEAEDGRRRLFRVPWQ 226 Query: 256 ---RTVEGIDSGFHEGIISRYGLDSDVARIEIL--------GQFPQQEVNNF-------- 296 + V + E I+ G D R E G FP Sbjct: 227 VVAQEVPSY-GRYVERQIALLGADHPFIRTEYELLELDGQGGLFPPSRQGQMQGDHPPLT 285 Query: 297 --IPHN----YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338 +P ++ A E D D A D T + R Sbjct: 286 RAVPGEEYALLLDVAGEEEESVDPGRAY----DPAAR-RDSTALTVVR 328 >gi|29028647|ref|NP_803336.1| terminase-large subunit [Staphylococcus phage phi 12] gi|18920571|gb|AAL82311.1| terminase-large subunit [Staphylococcus phage phi 12] Length = 453 Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 45/315 (14%), Positives = 83/315 (26%), Gaps = 58/315 (18%) Query: 85 GRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 GR GKTT + + + +S G I +AN Q + L+ E + P Sbjct: 2 GRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKASP------ 54 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 +L E + + + + + + DE Sbjct: 55 -------------KLRENFRPLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHE 101 Query: 203 TPD-IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT---- 257 D + I +T+ +L+G ++ + R D RT Sbjct: 102 FKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVNMVEAGRDTLDRIIEDERTFYYL 161 Query: 258 ------------------VEG----IDSGFHEGIISRYGLDSDV---ARIEILGQFPQQE 292 ID + + D + F + Sbjct: 162 ASLDDDDDINDSSNWIKANPNLGVSIDLAEMKEEWEKAKRTPDERGDFITKRFNIFANND 221 Query: 293 VNNFIPHNYIEEAMS-REAIDDLYAPLIMGCDIAGEGGDKTV----VVFRRGNIIEHIFD 347 +FI + +++ + P +G D++ D T G + Sbjct: 222 EMSFIDYPTLQKNNDIISLDELEGRPCTIGYDLSET-EDFTAACATFALDNGKVAVLTHS 280 Query: 348 WSAKLIQETNQEGCP 362 W K E + E P Sbjct: 281 WIPKHKVEYSNEKIP 295 >gi|327399853|ref|YP_004346884.1| type III restriction-modification system restriction subunit [Lactobacillus amylovorus GRL 1112] gi|327182523|gb|AEA32958.1| type III restriction-modification system restriction subunit [Lactobacillus amylovorus GRL 1112] Length = 896 Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 55/333 (16%), Positives = 109/333 (32%), Gaps = 33/333 (9%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKN-FVMRFFPWGIKGKPLEHFSQPHRWQLEFM 59 M R + +Q+ M E V S F + W + + WQL+++ Sbjct: 1 MGRKSNQVPVEDQKFPLMNQAQEAVRSIGYKFPSFHYLWENLKHEFRLYQKTALWQLDWV 60 Query: 60 EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119 E ++N + +N +F A G GKT + A +L+ + + ++ S Sbjct: 61 EN-----NTNTDINNHLMFHMA----TGSGKTDIMAATILYFYKKYKYTNFLFVSTSNAV 111 Query: 120 L----KNTLWAEVSKWLSMLP---HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 + N L + SK+L P + H +++ +S P+ + + + + + Sbjct: 112 INKTRDNFLNSNSSKYLFKAPIIINGHQVDVKEVSTFPTSGVS--NTIYLKLTTIEGLYS 169 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR- 231 + +F M + DEA + W NT Sbjct: 170 EIKSPRQDGLSFEDLK-DQPMIILADEAHH--------LNAKTKSKGKQIEWDTWENTID 220 Query: 232 --RLNGWFYDIFNI-PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 R D + I + I + + G V R+E Sbjct: 221 QVRNANSKNRQLEFTATIDVNQRNIYEKYKNKIIYKYDLDHLMEDGYSKKVFRLEANNDN 280 Query: 289 PQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMG 321 Q+ +N + + + ++RE + P+I+ Sbjct: 281 RQKLLNAVL-LSEYRKRLARELNISDFKPVILA 312 >gi|269964515|ref|ZP_06178755.1| Superfamily II DNA and RNA helicase [Vibrio alginolyticus 40B] gi|269830752|gb|EEZ84971.1| Superfamily II DNA and RNA helicase [Vibrio alginolyticus 40B] Length = 403 Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 45/318 (14%), Positives = 85/318 (26%), Gaps = 50/318 (15%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 + + +P + Q E + SA G GKT L Sbjct: 16 EAIEEMGYERPTKIQAEAIPQALDG------------RDILASAPTGTGKTAAFVLPALQ 63 Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 + P I+ + + A+ ++ L+ + F + + Sbjct: 64 YLQDFPRRKPGPARILILTPTRELAMQI--ADQARALAKNTKLNIFTITGGVQYQEHADI 121 Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 Q + + + + DEA D+ + Sbjct: 122 LATTQDI--------VVATPGRLKEYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRL 173 Query: 216 TELNPNRFWIMTSNTR----RLNGWFYDIFNIP---------LEDWKRYQIDTR-TVEGI 261 + R + + + G+ D+ N P E K Q R Sbjct: 174 SNECRWRKQTLLFSATLEGKGVEGFTADLLNDPAEIDAKSPLRERKKIAQWYHRADDAEH 233 Query: 262 DSGFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AID 312 + II++ + V E L + Q + IP ++I E R Sbjct: 234 KLELLKHIITQQAERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFR 293 Query: 313 DLYAPLIMGCDIAGEGGD 330 D +++ D+A G D Sbjct: 294 DGTVNVLLATDVAARGID 311 >gi|326435438|gb|EGD81008.1| ASCC3L1 protein [Salpingoeca sp. ATCC 50818] Length = 2150 Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 28/210 (13%), Positives = 55/210 (26%), Gaps = 20/210 (9%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 ++ A+ + + +S+ +F + A G GKT ML S P I +A Sbjct: 1325 KYFNAIQTQVFNALYDSDDNVF---VGAPTGSGKTVCAELAMLRSFSQNPNAKCIYVAP- 1380 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 L+ + W M + L+ S + + + T + Sbjct: 1381 ---LQEVCNRMLPAWKEMFGKGLGKTVVGLTGDMSA------DLKLLASANVVVATPEQW 1431 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL-------GFFTELNPNRFWIMTSN 229 H + D+A + ++L IM + Sbjct: 1432 DVLSRRWKQRRHVQNIALFIVDDAHMIGAENGPVLEIVCARMRYMASQLERRLRTIMLAV 1491 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 + + + R V Sbjct: 1492 PVANAREMGSWCGVSGSNVFNFHPTVRPVP 1521 >gi|288560035|ref|YP_003423521.1| DEAD/DEAH box helicase domain-containing protein [Methanobrevibacter ruminantium M1] gi|288542745|gb|ADC46629.1| DEAD/DEAH box helicase domain-containing protein [Methanobrevibacter ruminantium M1] Length = 808 Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 55/193 (28%), Gaps = 34/193 (17%) Query: 43 KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102 P E +P Q+E + A++ + K + A GIGKT L A+ + Sbjct: 192 TPSETLFEPRGPQIEALYALERSREEGFD-------KALVVAATGIGKTYLAAFDSI--- 241 Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162 ++ IA+ E E+ K + + + Sbjct: 242 ---KYKKVLFIAHRE---------EIIKQAAKSFKNVFPTKTIGFFYNQ---------HK 280 Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222 D +T + + DE K IL +F P Sbjct: 281 QTDKDMIFSLVQTLGKSSYLNDSYFKRDEFDYIVVDEFHHAVANNYKKILDYF---KPKF 337 Query: 223 FWIMTSNTRRLNG 235 +T+ RL+ Sbjct: 338 LLGLTATPERLDN 350 >gi|164687371|ref|ZP_02211399.1| hypothetical protein CLOBAR_01012 [Clostridium bartlettii DSM 16795] gi|164603795|gb|EDQ97260.1| hypothetical protein CLOBAR_01012 [Clostridium bartlettii DSM 16795] Length = 1119 Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 36/246 (14%), Positives = 66/246 (26%), Gaps = 29/246 (11%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q E + AV KC I AG G GKT ++ ++ L +I+ Sbjct: 346 RYYQKEAIIAVCEAFDRKQ-------RKCLIVAGTGTGKTRISVSLVDILTRHNFAKNIL 398 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 +A+ + +K SK L LP + + + ++ ID Sbjct: 399 FLADRKELVKQA-KNSFSKLLPDLPLCNLLDKSEDPENARMVFSTYPTMVNAIDDTKTKD 457 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEAS--------GTPDIINKSILGFFTELNPNR- 222 R ++ H + DE+ + + ++LG Sbjct: 458 GKRLFTPG-----------HFDLIIIDESHRSIYRKYQTIFEYFDANLLGLTATPKDEID 506 Query: 223 -FWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR 281 + + F +ED T V+ D + Sbjct: 507 KNTYSIFDLENKVPTYAYEFQQAVEDGYLVSYKTIEVKTDIMENGIKYDELSDEDKEQYE 566 Query: 282 IEILGQ 287 Sbjct: 567 STFEND 572 >gi|157113448|ref|XP_001657833.1| hypothetical protein AaeL_AAEL006469 [Aedes aegypti] gi|108877720|gb|EAT41945.1| conserved hypothetical protein [Aedes aegypti] Length = 1005 Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 19/160 (11%), Positives = 51/160 (31%), Gaps = 15/160 (9%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + + +++AGRG GK+ + + +++ + Sbjct: 255 QAKAVAQFIDALAEKQLKPP-----TSLTAGRGRGKSA-AMGLAISAAIAFGYVNVYVTS 308 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 S L L+ + K L ++ + + + ++ ++ +++ Sbjct: 309 PSPENLIT-LFEFIMKGFDALEYQEHTDYTIIRSTNPDFNKAIIRINITRNNRQTIQYIS 367 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF 214 + + DEA+ P + K++LG Sbjct: 368 PSDAHLLNAAD--------LLIIDEAAAIPLPLVKAMLGP 399 >gi|157123248|ref|XP_001660079.1| hypothetical protein AaeL_AAEL009460 [Aedes aegypti] gi|108874431|gb|EAT38656.1| conserved hypothetical protein [Aedes aegypti] Length = 1557 Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 21/157 (13%), Positives = 43/157 (27%), Gaps = 10/157 (6%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + G+GKT + A +M L P +I +A + V++ + Sbjct: 94 NTLVVLPTGLGKTFIAAVVMYNLYRWYPTGKVIFMAPTR--------PLVNQQIEACYKI 145 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + + +G + + + +T + + V D Sbjct: 146 MGIPKEDTAE-MTGKQQRKNRTGLWQSKRVFYVTPQVVLADINSPEQNFPINEVKLVVVD 204 Query: 199 EASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 EA ++ N N + S T Sbjct: 205 EAHKAKGRYAYTEVIKAIASTNRNFRVLALSATPGRT 241 >gi|332534743|ref|ZP_08410571.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas haloplanktis ANT/505] gi|332035830|gb|EGI72314.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas haloplanktis ANT/505] Length = 408 Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 21/196 (10%), Positives = 40/196 (20%), Gaps = 15/196 (7%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-----SII 111 + SA G GKT + + P ++ Sbjct: 18 KMGYETPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAIQYLLDFPRRDPGFARVL 77 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + + + + +L R L + + + + Sbjct: 78 VMTPTRELAYQ-----IHEQCELLAKR-----THLKIGVVTGGINYGTHKEIFEKNNDIL 127 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 H H + DEA D+ K + + NR + Sbjct: 128 IATPGRLMEYLETENFHAEHVEMLIIDEADRMLDMGFKKEMSRICDEAKNRRQCFLFSAT 187 Query: 232 RLNGWFYDIFNIPLED 247 L D Sbjct: 188 LEGDSVERFAEKTLND 203 >gi|317034954|ref|XP_001400800.2| DEAD/DEAH box helicase [Aspergillus niger CBS 513.88] Length = 1876 Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 29/222 (13%), Positives = 63/222 (28%), Gaps = 28/222 (12%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +P RWQ E ++ +D + A GKT ++ + M ++ + Sbjct: 809 EPDRWQREILDQIDAKAS------------LFVVAPTSAGKTFISFYAMKQVLESSDDGV 856 Query: 110 IICIANSETQLKNT---LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 ++ +A ++ + + A SK W + ++L Sbjct: 857 LVYVAPTKALVNQIAAEVQARFSKNYKHAGKSVWAIHTRDYRINNPTSCQILITV----- 911 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226 + + + ++ + + DE + + L P + Sbjct: 912 -PHILQIMLLAPSNAKSW----ASRIQRIIFDEIHCIGQSDDGVVWEQLLLLAPCPIIAL 966 Query: 227 ---TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265 N N W N D K + TR + + Sbjct: 967 SATVGNPEEFNDWLRLTQNANGHDLKMIEHKTRWSDLRKFEY 1008 >gi|134081473|emb|CAK46486.1| unnamed protein product [Aspergillus niger] Length = 1863 Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 29/222 (13%), Positives = 63/222 (28%), Gaps = 28/222 (12%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +P RWQ E ++ +D + A GKT ++ + M ++ + Sbjct: 796 EPDRWQREILDQIDAKAS------------LFVVAPTSAGKTFISFYAMKQVLESSDDGV 843 Query: 110 IICIANSETQLKNT---LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 ++ +A ++ + + A SK W + ++L Sbjct: 844 LVYVAPTKALVNQIAAEVQARFSKNYKHAGKSVWAIHTRDYRINNPTSCQILITV----- 898 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226 + + + ++ + + DE + + L P + Sbjct: 899 -PHILQIMLLAPSNAKSW----ASRIQRIIFDEIHCIGQSDDGVVWEQLLLLAPCPIIAL 953 Query: 227 ---TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265 N N W N D K + TR + + Sbjct: 954 SATVGNPEEFNDWLRLTQNANGHDLKMIEHKTRWSDLRKFEY 995 >gi|126664911|ref|ZP_01735894.1| Type III restriction enzyme, res subunit [Marinobacter sp. ELB17] gi|126630281|gb|EBA00896.1| Type III restriction enzyme, res subunit [Marinobacter sp. ELB17] Length = 548 Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 31/212 (14%), Positives = 51/212 (24%), Gaps = 27/212 (12%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + V H + + + + G GKT +++ + I+ +A Sbjct: 150 QRRAAQQVWRHIYRGSS-------RVLLHMPTGAGKTRTAMHIIVRYLIEHEPCVIVWLA 202 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 +S L+ A W M + E G+ Sbjct: 203 SSAELLEQAADAFEQAWCQMGNREVLVKRAWGGGDLDFEGFEDGVLIGGLQKLSAYFERH 262 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 R V DEA S++ TE + I S T Sbjct: 263 PIPAFRI-------GRRTKLVVIDEAHQAIAPTYSSVIEQLTETGADNALIGLSATPGRT 315 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFH 266 W D+R + D Sbjct: 316 -------------WNDISEDSRLSDFFDGNKV 334 >gi|291165079|gb|ADD81106.1| TerL [Rhodococcus phage ReqiPine5] Length = 553 Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 52/385 (13%), Positives = 97/385 (25%), Gaps = 62/385 (16%) Query: 1 MPRLISTDQKLEQ-ELHEMLMHAECVLSFKNFVMRFFPWGIKGKP--LEHFSQPHRWQLE 57 +PR+ +TDQ E H E +F + ++ K + + + P E Sbjct: 18 LPRMTTTDQLASLIESHTEGWTDERRSAFLDHLL-----REKDRADLRDSYDGP----AE 68 Query: 58 FMEAVDVH----------CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM-LWLISTRP 106 M A+D H + ++ GK+TL + L + P Sbjct: 69 LMAALDPHFVITPAIATISAAVERAIREPRRNLLVTMPPQEGKSTLCSVAAPLRALQINP 128 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 I +A L + + + ++L + ++ Sbjct: 129 DQRI-ILATYAAGLAEEHSRTMRSLIERAGSGAVDPVSGMALKDRLGFTFADDRRAVDGW 187 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFND-------EASGTP--DIINKSILGFFTE 217 K + T G + D EA + + Sbjct: 188 KVKGHDGGLNAVGIGGTTTGRRGD---LIIIDDPFKDMAEADSKTQREKVLTWFRSVAMT 244 Query: 218 LNPNRFWIMTSNTR-------RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG-- 268 I+ TR WK I + +G+ Sbjct: 245 RLAPTASIILVQTRWHEEDLAGKILELEKALPREDRRWKHINIPAVSEDGVPDALGRDPG 304 Query: 269 --IISRYGLD------------SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314 ++S G V GQ P + + E ++ Sbjct: 305 VAMVSARGRTKKQFADTRTVVGERVWSALYQGQ-PTPSSGGLFHRAWWTKNAVEELPENP 363 Query: 315 YAPLIMGCDIAGEG-GDKTVVVFRR 338 ++ D A G GD+ V+ + Sbjct: 364 NLRVV-AVDPADSGKGDEAGVIAAQ 387 >gi|209548331|ref|YP_002280248.1| terminase large subunit [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534087|gb|ACI54022.1| putative terminase large subunit protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 523 Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 18/165 (10%), Positives = 43/165 (26%), Gaps = 16/165 (9%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 + R +G TT ML + IA++ ++ ++ LP Sbjct: 55 VLLKARQLGLTTFIQIFMLDACVFNRDIRAGTIAHTLGDVQTIFRDKIKYPYDNLPEG-- 112 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + + + + + + + T H + + Sbjct: 113 -------IRNAVPVVRTNQTELLLANNSSIRVGTSLR---SGTLQYLHISEYGKL----C 158 Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL 245 + P+ + G + + + S G FY + Sbjct: 159 AKYPEKAREVRTGALNTVQAGQLVFVESTAEGQEGHFYSLCEDGQ 203 >gi|154685222|ref|YP_001420383.1| Yfml [Bacillus amyloliquefaciens FZB42] gi|154351073|gb|ABS73152.1| Yfml [Bacillus amyloliquefaciens FZB42] Length = 376 Score = 45.7 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 27/204 (13%), Positives = 54/204 (26%), Gaps = 28/204 (13%) Query: 31 FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90 F+ P+ + F +P Q + + + + G GK Sbjct: 7 FLQHTQPFIAENWEASGFQEPTVIQEKAAQVIMEGKD------------VIAESPTGTGK 54 Query: 91 TTLNAWMMLWLISTRPGMS---IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147 T A+ + L P +I +A S + + + W+ R Sbjct: 55 T--LAYTLPVLERINPEQKHPQVIILAPSRELVMQI-FQVIQDWIKGSDLRAL------- 104 Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG-TPDI 206 A + +Q + +K + I + DEA Sbjct: 105 --SLIGGANVKKQVEKLKNKPHIIAGTPGRVLELIQAKKLKMHEVKTIVLDEADQLVTQE 162 Query: 207 INKSILGFFTELNPNRFWIMTSNT 230 +++ +R + S T Sbjct: 163 HRETMKKIIKTTLKDRQLLSFSAT 186 >gi|194431875|ref|ZP_03064165.1| putative phage terminase, large subunit [Shigella dysenteriae 1012] gi|194419783|gb|EDX35862.1| putative phage terminase, large subunit [Shigella dysenteriae 1012] Length = 553 Score = 45.7 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 33/261 (12%), Positives = 56/261 (21%), Gaps = 27/261 (10%) Query: 23 ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82 E V F F +KG + WQ + T + Sbjct: 43 EVVERFIAFSRV--CPHVKGAMRGSPIELEPWQQFAFACILGFKVKATGRRKYTSAFIEV 100 Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 R K+T A + W + G I A ++ + + Sbjct: 101 --PRKNAKSTTAAILANWFLIMENGQQDIYTAAVSRDQARIVFDDARQMC--------LL 150 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 + L + +++ K T P DE Sbjct: 151 SRPLRRRVNIQAHKVMHPKSNSLLKPLAAKAATIEGTNPS-----------LSIVDEYHL 199 Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262 PD S L P + + D+ +D V Sbjct: 200 HPDNGVYSALELGMGARPEGLLFAITTSGSNVVSACKQHY----DYCCQILDGEEVNDSI 255 Query: 263 SGFHEGIISRYGLDSDVARIE 283 + +D I+ Sbjct: 256 FVLIYELDDENEVDDPAMWIK 276 >gi|330985172|gb|EGH83275.1| hypothetical protein PLA107_09108 [Pseudomonas syringae pv. lachrymans str. M301315] Length = 684 Score = 45.7 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 32/295 (10%), Positives = 65/295 (22%), Gaps = 28/295 (9%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA--NSETQLKNTLWAEVSKWLSM-LPHR 138 I R +G T A + A ++ + A W + L Sbjct: 177 ILKSRQVGLTYYFAGEAFMDAVLTGDNQVFLSASRAQSEIFRSYIIAFAQAWFGLELTGN 236 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT----CRTYSEERPDTFVGPHNTHGMA 194 + + + H + R + + + Sbjct: 237 PIVLSKDGKPWAELRFLSTNSSTAQGHHGHVYVDEYFWIRDFEKLNTVASAMATHKKWRK 296 Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254 + S G + + + + P W++ Sbjct: 297 TYFSTPSAVSHQAYPFWQGEKFRNSKRK---AAKDPWPSDKQISAGALCPDGQWRKVITI 353 Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR------ 308 + G F + D D + + +F + F +E S Sbjct: 354 LDAIAGGCDLFDLEQLQLEYDD-DKFQQLFMCKFIDSSQSAF-SLADLERCYSDLSLWAD 411 Query: 309 ----EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGN------IIEHIFDWSAKLI 353 + +P+ +G D + D T VV I W + Sbjct: 412 FDPDDPRPYGNSPVWIGYDPSRTRDDATCVVIAPPLENGGKFRILEKHSWRGQSF 466 >gi|229526565|ref|ZP_04415969.1| large subunit terminase [Vibrio cholerae bv. albensis VL426] gi|229336723|gb|EEO01741.1| large subunit terminase [Vibrio cholerae bv. albensis VL426] Length = 565 Score = 45.7 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 23/196 (11%), Positives = 49/196 (25%), Gaps = 31/196 (15%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + I R +G +T +L + +A + Q ++ + Sbjct: 63 RNIILKARQLGFSTAIDIYLLDEALFNKRLKCGIVA-QDKQAAGEIFR----------TK 111 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT---YSEERPDTFVGPH-NTHGMA 194 +L +S + + + R T H + HG Sbjct: 112 VEVPYDNLPAWLKAATPTEERKSGANGGRMVFKNGSSIQVATSFRSGTVQRLHISEHGKI 171 Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP---------- 244 + P + G ++ N + S + G FY + Sbjct: 172 -----CAKYPHKAKEVKTGTLNAIHQNAICFIESTAEGVGGDFYTMCMRAMEQAKSGVEL 226 Query: 245 -LEDWKRYQIDTRTVE 259 ED++ + Sbjct: 227 SREDYQFHFFAWWQDP 242 >gi|168698695|ref|ZP_02730972.1| putative helicase SNF2 family protein [Gemmata obscuriglobus UQM 2246] Length = 1047 Score = 45.7 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 33/276 (11%), Positives = 78/276 (28%), Gaps = 29/276 (10%) Query: 61 AVDVHCHSNVNNS-NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS--- 116 ++ + V + ++ G+GKT + L LI I+ + + Sbjct: 108 DIEDYQLDPVVRAIQMPRVNLLVADDVGLGKTIEAGMVALELIIRHRTRKILIVCPAPLQ 167 Query: 117 ---ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173 + Q+++ + S L + +S +H + W + K Sbjct: 168 VQWQEQMRDKFGLDFRIVNSALVGQLR---RSRGIHVNPWNHFPRLITSIDFLKRERPL- 223 Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPD------IINKSILGFFTE--LNPNRFWI 225 R + E P + + DEA + + + Sbjct: 224 RRFRELLPGPDDPIYPRRFDLLIVDEAHNCAPSGVGRYATDSQRTQALRQLVPHFEHKLF 283 Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285 +T+ + + + F+ LE + T + + Sbjct: 284 LTATP---HNGYPESFSALLELLDNQRFARSTPPDRKQLNAVMVRRMKSELPP----KWD 336 Query: 286 G--QFPQQEVNNF-IPHNYIEEAMSREAIDDLYAPL 318 G +FP++ ++ +P+ E A+ + Sbjct: 337 GSPRFPKRVLDPIEVPYTDDERAVHTALRRYADLRV 372 >gi|167622358|ref|YP_001672652.1| type III restriction protein res subunit [Shewanella halifaxensis HAW-EB4] gi|167352380|gb|ABZ74993.1| type III restriction protein res subunit [Shewanella halifaxensis HAW-EB4] Length = 1072 Score = 45.7 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 26/193 (13%), Positives = 50/193 (25%), Gaps = 29/193 (15%) Query: 44 PLEHFS-QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102 P +F +PH Q ++ + V + ++ + A G GKT ++A+ Sbjct: 319 PSFYFDIKPHSHQRAILDKL------KVERELHSRYRNLVVAATGTGKTIISAFDFAEFY 372 Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162 + P + +A+ E LK + L Sbjct: 373 AANPEAKFLFLAHREEILKQ-------------------ARSAYRGVLKSNQFGELLVGQ 413 Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222 K + S + + + DE P Sbjct: 414 NKPQKFNQLFASIQSLNNQLATIQLTEDYFDYIVIDEVHHIAASSY---RPVLQHFKPQI 470 Query: 223 FWIMTSNTRRLNG 235 +T+ R +G Sbjct: 471 LVGLTATPERHDG 483 >gi|297580076|ref|ZP_06942003.1| pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase [Vibrio cholerae RC385] gi|297535722|gb|EFH74556.1| pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase [Vibrio cholerae RC385] Length = 565 Score = 45.7 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 19/192 (9%), Positives = 47/192 (24%), Gaps = 23/192 (11%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + I R +G +T +L + +A + E+ + +P+ Sbjct: 63 RNIILKARQLGFSTAIDIYLLDEALFNKRLKCGIVAQDKQAA-----GEIFRTKVEVPYD 117 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + ++ + M + ++ + Sbjct: 118 NLPAWLKAAIPTEERKSGANGGRMVFKNGSSIQVATSFRSGTVQRLHISEHGKI------ 171 Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP-----------LED 247 + P + G ++ N + S + G FY I ED Sbjct: 172 -CAKYPHKAKEVKTGTLNAIHQNAICFIESTAEGVGGDFYTICMRAMEQAKSGVELSRED 230 Query: 248 WKRYQIDTRTVE 259 ++ + Sbjct: 231 YQFHFFAWWQDP 242 >gi|304389862|ref|ZP_07371821.1| SNF2 domain protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327038|gb|EFL94277.1| SNF2 domain protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 458 Score = 45.7 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 59/193 (30%), Gaps = 28/193 (14%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG-- 107 QPH +Q + + + H + AI G G+GK+ + +W + Sbjct: 4 QPHNYQRQATQYIIDHPEA------------AILLGMGLGKSVIT-LTAIWQLMLDYFTI 50 Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 ++ IA ++T AE++KW + + + + + + ++ Sbjct: 51 SRVLVIAP-LRVARDTWSAEIAKWDHLDGLAVAVAVGTKQDRLAALAKSAMVTIINRENI 109 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227 + + + V DE S + K + W+ Sbjct: 110 PWLVN------------QLNGSWPFDMVVIDELSSFKNHRAKRFTALVKMRPFVKRWVGL 157 Query: 228 SNTRRLNGWFYDI 240 + T NG Sbjct: 158 TGTPASNGLMDVW 170 >gi|294783569|ref|ZP_06748893.1| phage terminase large subunit [Fusobacterium sp. 1_1_41FAA] gi|294480447|gb|EFG28224.1| phage terminase large subunit [Fusobacterium sp. 1_1_41FAA] Length = 572 Score = 45.7 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 37/310 (11%), Positives = 78/310 (25%), Gaps = 61/310 (19%) Query: 69 NVNNSNPTIFKCA-ISAGRGIGKTTLNAWM-MLWLISTRPGMSIICIANSETQLKNTLWA 126 + F+ A + GR GK+ L+ L+ I C A + Q N +W Sbjct: 84 KKKKTGDRRFREAYLQVGRRNGKSFLSGIESTLFSSMIGVKERIFCAATKQDQA-NIVWD 142 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 EV ++ S + + ++++ I + + D Sbjct: 143 EVRNFIE-----------SDRELTELYVVKEHDRTIKSSLTGSVIKALSKDTKGMD---- 187 Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF----- 241 + DE P+ +L N + + F Sbjct: 188 --GFGNVLAICDELHAHPNNQIYKLLFDGQADVDNALTLAITTAGFNLNSFCYEHYKFCE 245 Query: 242 ------------------NIPLEDWKRYQIDTRTVEGIDSGFH----------------E 267 +D ++ ++ Sbjct: 246 KILEGVIEKDTLFIFICEMDADDDIWDWKNWLKSNPYFLYEEDGITPNKKKIDLFKQKAI 305 Query: 268 GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA-MSREAIDDLYAPLIMGCDIAG 326 + G + + L ++ +I ++E D +G D++ Sbjct: 306 DAKEKGGAELVNFLTKQLNRWVTTGSGQYINLEKLKECESDLTLEDMKGKDCYLGFDLS- 364 Query: 327 EGGDKTVVVF 336 +GGD T + Sbjct: 365 KGGDLTSIAL 374 >gi|321472411|gb|EFX83381.1| hypothetical protein DAPPUDRAFT_48010 [Daphnia pulex] Length = 657 Score = 45.7 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 26/201 (12%), Positives = 62/201 (30%), Gaps = 26/201 (12%) Query: 36 FPWGIKGKPLEHFSQP-HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN 94 F G ++P ++Q + +E H ++ G+GKT + Sbjct: 93 FDMGAGDTWFYPTNKPVRKYQRDIVETCLFH-------------NTLVTLPTGLGKTFIA 139 Query: 95 AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWY 154 A +M P II +A ++ V++ + + S S +G Sbjct: 140 AVVMYNFFRWYPRGKIIFMAPTK--------PLVAQQIQACYEIMGLPLDSTSE-MTGAM 190 Query: 155 AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG-TPDIINKSILG 213 + ++ + + + +T + + + + + DEA + ++ Sbjct: 191 SPADRKTQWREKRVFFLTPQILTNDISRA--AFPASEIKCLVLDEAHKALGNYAYVQVVQ 248 Query: 214 FFTELNPNRFWIMTSNTRRLN 234 + S T + Sbjct: 249 ELCNHGAVFRILALSATPGSD 269 >gi|296126352|ref|YP_003633604.1| Terminase [Brachyspira murdochii DSM 12563] gi|296126731|ref|YP_003633983.1| Terminase [Brachyspira murdochii DSM 12563] gi|296127295|ref|YP_003634547.1| Terminase [Brachyspira murdochii DSM 12563] gi|296018168|gb|ADG71405.1| Terminase [Brachyspira murdochii DSM 12563] gi|296018547|gb|ADG71784.1| Terminase [Brachyspira murdochii DSM 12563] gi|296019111|gb|ADG72348.1| Terminase [Brachyspira murdochii DSM 12563] Length = 590 Score = 45.7 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 26/199 (13%), Positives = 51/199 (25%), Gaps = 24/199 (12%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS-- 109 W+ + ++ N K + R GKTT + + + Sbjct: 75 EPWEQFIIASI--FGWRRKENKLRRYKKAYVQVSRKNGKTTFASGIGNYCFFCDSPAEAG 132 Query: 110 --IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 I IA + Q K W+E + + + ++ ++ SK Sbjct: 133 VEIYYIATKKDQAK-IAWSESERQIRKAK-----ALNKEAITYKQTSTITKKKDTASKSK 186 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIM 226 T P V DE PD + + +I+ Sbjct: 187 PLGQDSNTEDGLNPH-----------LVIVDEYHAHPDNELLNVLESGMGARRQPLVFII 235 Query: 227 TSNTRRLNGWFYDIFNIPL 245 T+ + + + Sbjct: 236 TTAGFDKSSVCFSEYEYAK 254 >gi|326339403|gb|EGD63215.1| Phage terminase large subunit [Escherichia coli O157:H7 str. 1044] Length = 492 Score = 45.7 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 48/232 (20%), Gaps = 25/232 (10%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 WQ + T + R K+T A + W + G I Sbjct: 9 EPWQQFAFACILGFKVKATGRRKYTSAFIEV--PRKNAKSTTAAILANWFLIMENGQQDI 66 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A ++ + + + L + +++ K Sbjct: 67 YTAAVSRDQARIVFDDARQMC--------LLSRPLRRRVNIQAHKVIHPKSNSLLKPLAA 118 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 T P DE PD S L P + + Sbjct: 119 KAATIEGTTPS-----------LAIVDEYHLHPDNGVYSALELGMGARPEGLLFAITTSG 167 Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283 D+ +D V + +D I+ Sbjct: 168 SNVVSACKQHY----DYCCQILDGEEVNESMFVLIYELDDESEVDDPAMWIK 215 >gi|310792137|gb|EFQ27664.1| Sec63 Brl domain-containing protein [Glomerella graminicola M1.001] Length = 1974 Score = 45.7 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 32/123 (26%), Gaps = 10/123 (8%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + G GKT M W RPG ++ IA + ++ + ++ L + Sbjct: 1148 NVLLGSPTGSGKTVAAELAMWWAFRERPGSKVVYIAPMKALVRERVKDWGARLARPLGLK 1207 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 E+ + + + + V D Sbjct: 1208 -LVELTGDNTPDTRTIKDADIIITTPEKWDGISRSWQTRGYV---------RQVSLVIID 1257 Query: 199 EAS 201 E Sbjct: 1258 EIH 1260 >gi|195569151|ref|XP_002102574.1| GD19428 [Drosophila simulans] gi|194198501|gb|EDX12077.1| GD19428 [Drosophila simulans] Length = 1487 Score = 45.7 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 29/211 (13%), Positives = 54/211 (25%), Gaps = 11/211 (5%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + G+GKT + A +M P I+ +A + + + A ++P Sbjct: 73 NTLVVLPTGLGKTFIAAVVMYNFYRWYPKGKIVFMAPTRPLVSQQIHASQK----IMPFP 128 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 +Q P AEL + + D + D Sbjct: 129 SEDTVQLTGQLPRPKRAELWASKRVFFATPQVVHS---DMLEADGGSSFPFGSIKLIVVD 185 Query: 199 EAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLN--GWFYDIFNIPLEDWKRYQIDT 255 EA + N + + S T N+ + + + + Sbjct: 186 EAHRAKGRYAYTQVADCLMARNRHFRMLALSATPGRTMEDVAAVCRNLYISNLQVRWDTS 245 Query: 256 RTV-EGIDSGFHEGIISRYGLDSDVARIEIL 285 V I I+ R +L Sbjct: 246 IDVQPYIHRRTIRTIVVSLKERIKEPRERLL 276 >gi|195344412|ref|XP_002038781.1| GM10427 [Drosophila sechellia] gi|194133802|gb|EDW55318.1| GM10427 [Drosophila sechellia] Length = 1593 Score = 45.7 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 29/211 (13%), Positives = 54/211 (25%), Gaps = 11/211 (5%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + G+GKT + A +M P I+ +A + + + A ++P Sbjct: 73 NTLVVLPTGLGKTFIAAVVMYNFYRWYPKGKIVFMAPTRPLVSQQIHASQK----IMPFP 128 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 +Q P AEL + + D + D Sbjct: 129 SEDTVQLTGQLPRPKRAELWASKRVFFATPQVVHS---DMLEADGGSSFPFGSIKLIVVD 185 Query: 199 EAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLN--GWFYDIFNIPLEDWKRYQIDT 255 EA + N + + S T N+ + + + + Sbjct: 186 EAHRAKGRYAYTQVADCLMARNRHFRMLALSATPGRTMEDVAAVCRNLYISNLQVRWDTS 245 Query: 256 RTV-EGIDSGFHEGIISRYGLDSDVARIEIL 285 V I I+ R +L Sbjct: 246 IDVQPYIHRRTIRTIVVSLKERIKEPRERLL 276 >gi|304406229|ref|ZP_07387886.1| type III restriction protein res subunit [Paenibacillus curdlanolyticus YK9] gi|304344813|gb|EFM10650.1| type III restriction protein res subunit [Paenibacillus curdlanolyticus YK9] Length = 1052 Score = 45.7 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 73/232 (31%), Gaps = 39/232 (16%) Query: 4 LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63 ++++ + +++L + L + + ++ F P+ +Q E +E ++ Sbjct: 290 FLASEPEHDEQLKQALGKQKLNDGNQESMVFAF-----------TIMPYDYQKEILEKLE 338 Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 + K + A G+GKT ++A+ P ++ +A+ E LK + Sbjct: 339 A------ERALYGRTKNLLVAATGVGKTVISAFDYKRYAQRHPQARLLFVAHREEILKQS 392 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 + F ++ + + + S + + Sbjct: 393 M------------DTFRFILKD----LNFGELHVGSHQAKSLDHLFISIQSLNSIKLTER 436 Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 + + DE + + PN +T+ R++G Sbjct: 437 TT---ADYYDFIIVDEFHHAAAPSYQKL---LNHYQPNILLGLTATPERMDG 482 >gi|239622569|ref|ZP_04665600.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514566|gb|EEQ54433.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 487 Score = 45.7 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 32/304 (10%), Positives = 61/304 (20%), Gaps = 53/304 (17%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ + ++ + + + R GKTT+ + P Sbjct: 41 PWQRQVIDVISE-IDPSTGTYWYDELVLTVQ--RQAGKTTITKSYDVRNSLWGPDRKTWY 97 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 +A + + V W L ++ + Sbjct: 98 LAQTGKDANDQFRDFVKSW----------RKSRLRKLAKPPRLSNGSMALEFKNGSQLRP 147 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEA-------------SGT-------------PDI 206 T H G + DE P I Sbjct: 148 GGA-------TEAAGHGVQGDLINVDEVWSLSKQQAKNLKDGFIPTTTTRLKLTGVRPQI 200 Query: 207 INKSILGFFTEL--NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG---- 260 S G + N + + +F + I R G Sbjct: 201 WWTSTEGNASSEYFNDRLDRLRAGDIPDRTAFFDFGIPFDADPEDLETI-WRYHPGAGYL 259 Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIM 320 D G ++ D++ + I + M + + Sbjct: 260 FDFDQLAGFRRQFDDDAEGWARAFGNIRDAGSTDRAIDSLLWADTMDEPVTPEHGMRVCF 319 Query: 321 GCDI 324 G + Sbjct: 320 GVGV 323 >gi|145249212|ref|XP_001400945.1| helicase mug81 [Aspergillus niger CBS 513.88] gi|134081623|emb|CAK46557.1| unnamed protein product [Aspergillus niger] Length = 1991 Score = 45.7 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 14/123 (11%), Positives = 33/123 (26%), Gaps = 10/123 (8%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + G GKT M W +PG ++ IA + ++ + + + + + Sbjct: 1159 NVLLGSPTGSGKTVAAELAMWWAFREKPGSKVVYIAPMKALVRERVQDWKKRLTAPMGLK 1218 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 E+ + + + + + V D Sbjct: 1219 -LVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRDYV---------RKVSLVIID 1268 Query: 199 EAS 201 E Sbjct: 1269 EIH 1271 >gi|115396706|ref|XP_001213992.1| hypothetical protein ATEG_04814 [Aspergillus terreus NIH2624] gi|114193561|gb|EAU35261.1| hypothetical protein ATEG_04814 [Aspergillus terreus NIH2624] Length = 2002 Score = 45.7 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 14/123 (11%), Positives = 33/123 (26%), Gaps = 10/123 (8%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + G GKT M W +PG ++ IA + ++ + + + + + Sbjct: 1157 NVLLGSPTGSGKTVAAELAMWWAFREKPGSKVVYIAPMKALVRERVQDWKKRLTAPMGLK 1216 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 E+ + + + + + V D Sbjct: 1217 -LVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRDYV---------RKVSLVIID 1266 Query: 199 EAS 201 E Sbjct: 1267 EIH 1269 >gi|172056353|ref|YP_001812813.1| type III restriction protein res subunit [Exiguobacterium sibiricum 255-15] gi|171988874|gb|ACB59796.1| type III restriction protein res subunit [Exiguobacterium sibiricum 255-15] Length = 774 Score = 45.7 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 65/231 (28%), Gaps = 35/231 (15%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 PHR Q E + A+ + + A G+GKT L+A R I Sbjct: 195 PHRVQEEALRALRETMEEGRTRA------LTVLA-TGLGKTYLSA------FFARDFKRI 241 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + +A+ E+ + + Q + + + + Sbjct: 242 LFLAHQ---------RELLEQAERSFKKVESNWQ-TAFYIGSDRTNDEQTDV------LF 285 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 + +T S+ R + + DE + + P +T+ Sbjct: 286 GSVQTLSQNRH--LERFAQDYFDLIIIDEFHHAAAKSYQKV---LAHFEPRFLLGLTATP 340 Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR 281 R++G + + EG + FH I S + R Sbjct: 341 DRMDGA-DVYALCDNNVAFQMHFTSAINEGFLTPFHYYGIHDVIDYSQLRR 390 >gi|259146921|emb|CAY80177.1| Dna2p [Saccharomyces cerevisiae EC1118] Length = 1522 Score = 45.7 bits (106), Expect = 0.013, Method: Composition-based stats. Identities = 25/173 (14%), Positives = 51/173 (29%), Gaps = 6/173 (3%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTT+ A ++ I G ++ + + + + N L + +S++ ++ Sbjct: 1077 GTGKTTVIAEII--KILVSEGKRVLLTSYTHSAVDNILIKLRNTNISIMRLGMKHKVHPD 1134 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + YA + + + + T T D + V DEAS Sbjct: 1135 TQKYVPNYASVKSYNDYLSKINSTSVVATTCLGINDILFTLNEKDFDYVILDEASQIS-- 1192 Query: 207 INKSILGFFTELNPNRFWIMTSN-TRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 LG N + + + +K + Sbjct: 1193 -MPVALGPLRYGNRFIMVGDHYQLPPLVKNDAARLGGLEESLFKTFCEKHPES 1244 >gi|151944110|gb|EDN62403.1| DNA helicase [Saccharomyces cerevisiae YJM789] Length = 1522 Score = 45.7 bits (106), Expect = 0.013, Method: Composition-based stats. Identities = 25/173 (14%), Positives = 51/173 (29%), Gaps = 6/173 (3%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTT+ A ++ I G ++ + + + + N L + +S++ ++ Sbjct: 1077 GTGKTTVIAEII--KILVSEGKRVLLTSYTHSAVDNILIKLRNTNISIMRLGMKHKVHPD 1134 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + YA + + + + T T D + V DEAS Sbjct: 1135 TQKYVPNYASVKSYNDYLSKINSTSVVATTCLGINDILFTLNEKDFDYVILDEASQIS-- 1192 Query: 207 INKSILGFFTELNPNRFWIMTSN-TRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 LG N + + + +K + Sbjct: 1193 -MPVALGPLRYGNRFIMVGDHYQLPPLVKNDAARLGGLEESLFKTFCEKHPES 1244 >gi|6321958|ref|NP_012034.1| Dna2p [Saccharomyces cerevisiae S288c] gi|731738|sp|P38859|DNA2_YEAST RecName: Full=DNA replication ATP-dependent helicase DNA2 gi|458906|gb|AAB68010.1| Dna2p: DNA replication helicase [Saccharomyces cerevisiae] gi|256273969|gb|EEU08887.1| Dna2p [Saccharomyces cerevisiae JAY291] gi|285810070|tpg|DAA06857.1| TPA: Dna2p [Saccharomyces cerevisiae S288c] Length = 1522 Score = 45.7 bits (106), Expect = 0.013, Method: Composition-based stats. Identities = 25/173 (14%), Positives = 51/173 (29%), Gaps = 6/173 (3%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTT+ A ++ I G ++ + + + + N L + +S++ ++ Sbjct: 1077 GTGKTTVIAEII--KILVSEGKRVLLTSYTHSAVDNILIKLRNTNISIMRLGMKHKVHPD 1134 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + YA + + + + T T D + V DEAS Sbjct: 1135 TQKYVPNYASVKSYNDYLSKINSTSVVATTCLGINDILFTLNEKDFDYVILDEASQIS-- 1192 Query: 207 INKSILGFFTELNPNRFWIMTSN-TRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 LG N + + + +K + Sbjct: 1193 -MPVALGPLRYGNRFIMVGDHYQLPPLVKNDAARLGGLEESLFKTFCEKHPES 1244 >gi|198450789|ref|XP_001358130.2| GA18736 [Drosophila pseudoobscura pseudoobscura] gi|198131191|gb|EAL27267.2| GA18736 [Drosophila pseudoobscura pseudoobscura] Length = 2182 Score = 45.7 bits (106), Expect = 0.013, Method: Composition-based stats. Identities = 20/175 (11%), Positives = 42/175 (24%), Gaps = 20/175 (11%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L F+ + Q + + + + A G GKT + + ++ Sbjct: 1329 LYGFTHFNPIQTQIFHCLYHTDN-----------NVLLGAPTGSGKTIVAELAIFRALNE 1377 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 P ++ IA + +K + ++ E+ E Sbjct: 1378 NPKCKVVYIAPLKALVKERIGDWEKRFHRSSLGLKVVELTGDVTPDIQAIRESQLIVTTP 1437 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219 + E H + DE + I + N Sbjct: 1438 EKWDGISRSWQTREYV---------QHVSLIVIDEIHLLGEDRGPVIEVIVSRTN 1483 >gi|195143553|ref|XP_002012762.1| GL23759 [Drosophila persimilis] gi|194101705|gb|EDW23748.1| GL23759 [Drosophila persimilis] Length = 2182 Score = 45.7 bits (106), Expect = 0.013, Method: Composition-based stats. Identities = 20/175 (11%), Positives = 42/175 (24%), Gaps = 20/175 (11%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L F+ + Q + + + + A G GKT + + ++ Sbjct: 1329 LYGFTHFNPIQTQIFHCLYHTDN-----------NVLLGAPTGSGKTIVAELAIFRALNE 1377 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 P ++ IA + +K + ++ E+ E Sbjct: 1378 NPKCKVVYIAPLKALVKERIGDWEKRFHRSSLGLKVVELTGDVTPDIQAIRESQLIVTTP 1437 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219 + E H + DE + I + N Sbjct: 1438 EKWDGISRSWQTREYV---------QHVSLIVIDEIHLLGEDRGPVIEVIVSRTN 1483 >gi|330939345|gb|EGH42730.1| hypothetical protein PSYPI_10145 [Pseudomonas syringae pv. pisi str. 1704B] Length = 650 Score = 45.7 bits (106), Expect = 0.013, Method: Composition-based stats. Identities = 32/295 (10%), Positives = 65/295 (22%), Gaps = 28/295 (9%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA--NSETQLKNTLWAEVSKWLSM-LPHR 138 I R +G T A + A ++ + A W + L Sbjct: 177 ILKSRQVGLTYYFAGEAFMDAVLTGDNQVFLSASRAQSEIFRSYIIAFAQAWFGLELTGN 236 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT----CRTYSEERPDTFVGPHNTHGMA 194 + + + H + R + + + Sbjct: 237 PIVLSKDGKPWAELRFLSTNSSTAQGHHGHVYVDEYFWIRDFEKLNTVASAMATHKKWRK 296 Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254 + S G + + + + P W++ Sbjct: 297 TYFSTPSAVSHQAYPFWQGEKFRNSKRK---AAKDPWPSDKQISAGALCPDGQWRKVITI 353 Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR------ 308 + G F + D D + + +F + F +E S Sbjct: 354 LDAIAGGCDLFDLEQLQLEYDD-DKFQQLFMCKFIDSSQSAF-SLADLERCYSDLSLWAD 411 Query: 309 ----EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGN------IIEHIFDWSAKLI 353 + +P+ +G D + D T VV I W + Sbjct: 412 FDPDDPRPYGNSPVWIGYDPSRTRDDATCVVIAPPLENGGKFRILEKHSWRGQSF 466 >gi|289628558|ref|ZP_06461512.1| hypothetical protein PsyrpaN_26063 [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648058|ref|ZP_06479401.1| hypothetical protein Psyrpa2_09957 [Pseudomonas syringae pv. aesculi str. 2250] gi|330870325|gb|EGH05034.1| hypothetical protein PSYAE_24348 [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 684 Score = 45.7 bits (106), Expect = 0.013, Method: Composition-based stats. Identities = 32/295 (10%), Positives = 65/295 (22%), Gaps = 28/295 (9%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA--NSETQLKNTLWAEVSKWLSM-LPHR 138 I R +G T A + A ++ + A W + L Sbjct: 177 ILKSRQVGLTYYFAGEAFMDAVLTGDNQVFLSASRAQSEIFRSYIIAFAQSWFGLELTGN 236 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT----CRTYSEERPDTFVGPHNTHGMA 194 + + + H + R + + + Sbjct: 237 PIVLSKDGKPWAELRFLSTNSSTAQGHHGHVYVDEYFWIRDFEKLNTVASAMATHKKWRK 296 Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254 + S G + + + + P W++ Sbjct: 297 TYFSTPSAVSHQAYPFWQGEKFRNSKRK---AAKDPWPSDKQISAGALCPDGQWRKVITI 353 Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR------ 308 + G F + D D + + +F + F +E S Sbjct: 354 LDAIAGGCDLFDLEQLQLEY-DEDKFQQLFMCKFIDSSQSAF-SLADLERCYSDLSLWAD 411 Query: 309 ----EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGN------IIEHIFDWSAKLI 353 + +P+ +G D + D T VV I W + Sbjct: 412 FDPDDPRPYGNSPVWIGYDPSRTRDDATCVVIAPPLENGGKFRILEKHSWRGQSF 466 >gi|300521552|gb|ADK25987.1| ERRC4-type helicase [Candidatus Nitrososphaera gargensis] Length = 740 Score = 45.7 bits (106), Expect = 0.013, Method: Composition-based stats. Identities = 26/301 (8%), Positives = 79/301 (26%), Gaps = 42/301 (13%) Query: 48 FSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107 P W+ +D + + + +GKT + A + ++ Sbjct: 7 AEHPLVWEG----TIDHRLYQKNIADAASHKNTLVILPTALGKTMIAALVCADMLYKYRD 62 Query: 108 MSIICIANSETQLKNTL--WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 ++ +A + + L ++ V K + M + P A ++ + + Sbjct: 63 KRVLMMAPTRPLVSQHLKSFSAVLKIME-----EQVAMVTGKTVPEARRAVWDKRDVRL- 116 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNP-NRF 223 + H + + DEA D +I + + Sbjct: 117 -----VFATPEVVRNDLEEGRLHLKDFILLVFDEAHRAVKDYAYTAIAREYVGQSMHPVI 171 Query: 224 WIMTSNTRRLNGWFYDIFNIPLEDWK-----------------RYQIDTRTVEGIDSGFH 266 MT++ ++ N + + + + + + Sbjct: 172 LAMTASPGAKKERIQEVCNNLYIEHVEYRSEEDGDVKPYVNPIDVKWEWFDLPE-EYRYI 230 Query: 267 EGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI-----DDLYAPLIMG 321 ++ + ++ +++ + IE + ++ P+ + Sbjct: 231 ASVLRSMLDERLKWLVQRGLLGKKKDTRWIFKRDLIEAGEALRYRLELTMEEQRGPIYVA 290 Query: 322 C 322 Sbjct: 291 I 291 >gi|195124341|ref|XP_002006652.1| GI18468 [Drosophila mojavensis] gi|193911720|gb|EDW10587.1| GI18468 [Drosophila mojavensis] Length = 1373 Score = 45.7 bits (106), Expect = 0.013, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 49/160 (30%), Gaps = 12/160 (7%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + G+GKT + A +M L P +I +A + + +++ ++P Sbjct: 72 RNTLVVLPTGLGKTFIAAVVMYNLHRWYPESKLIFMAPTRPLVAQ----QIAACQKIMPF 127 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM--AV 195 ++ P AEL + + T + + DT G + + Sbjct: 128 CPEDTVELTGRLPRAKRAELW-----ATKRVFFATPQVVQSDMLDTGDGLQFPYMSIKLL 182 Query: 196 FNDEAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 DEA + NP + S T Sbjct: 183 VVDEAHRAKGRYAYTQVTDSLMARNPYFRMLALSATPGRT 222 >gi|195136690|ref|XP_002012487.1| GI16508 [Drosophila mojavensis] gi|193906452|gb|EDW05319.1| GI16508 [Drosophila mojavensis] Length = 293 Score = 45.7 bits (106), Expect = 0.013, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 49/160 (30%), Gaps = 12/160 (7%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + G+GKT + A +M L P +I +A + + +++ ++P Sbjct: 72 RNTLVVLPTGLGKTFIAAVVMYNLHRWYPESKLIFMAPTRPLVAQ----QIAACQKIMPF 127 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM--AV 195 ++ P AEL + + T + + DT G + + Sbjct: 128 CPEDTVELTGRLPRAKRAELW-----ATKRVFFATPQVVQSDMLDTGDGLQFPYMSIKLL 182 Query: 196 FNDEAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 DEA + NP + S T Sbjct: 183 VVDEAHRAKGRYAYTQVTDSLMARNPYFRMLALSATPGRT 222 >gi|124009888|ref|ZP_01694555.1| hypothetical protein M23134_06477 [Microscilla marina ATCC 23134] gi|123984124|gb|EAY24490.1| hypothetical protein M23134_06477 [Microscilla marina ATCC 23134] Length = 539 Score = 45.7 bits (106), Expect = 0.013, Method: Composition-based stats. Identities = 49/282 (17%), Positives = 82/282 (29%), Gaps = 40/282 (14%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 AG+G GKT + LI+ PG+ AN++ QL ++ V L + E Sbjct: 35 MAGQGAGKTHGAGLISFRLITNFPGVFGFMGANTDMQLTDSTLYRVFLVWKDLGLEEYDE 94 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE-----ERPDTFVGPHNTHGMAVFN 197 + G G K Y ++ + + Sbjct: 95 YLGQGDYVVGTQPPRHFSREGHAFKSYRNKISFWNGCVVFIGSLENYKAHDGKEFAWAIL 154 Query: 198 DEASGTPDI-INKSILGFFTELN---PNRFWIMT------SNT---RRLNGWFYDIFNIP 244 DE T + + + ILG + +T + Y + Sbjct: 155 DETKDTREEAVQEVILGRLRQQGLYISEATQALTSEEYDEGSPVVANLPFNPLYIFTSPA 214 Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ--FPQQEVNNF----IP 298 W D + + E I ++ + ++ G F + +P Sbjct: 215 KVPWIN---DWFELS----EYEEEIKAKIYNPPQYFKKKVGGDSKFVVISATHLNLKNLP 267 Query: 299 HNYIEEAMSREAIDDLYAPLIMGCDI-AGEGG------DKTV 333 NYIE+ + LI G D A GG D +V Sbjct: 268 SNYIEK-QEANLASHRHGMLIYG-DPLAKSGGEFWKQWDASV 307 >gi|301169159|emb|CBW28756.1| phage d3 terminase-like protein [Haemophilus influenzae 10810] Length = 555 Score = 45.3 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 37/326 (11%), Positives = 72/326 (22%), Gaps = 54/326 (16%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ + ++ ++ R K+T+ A + W + G I Sbjct: 71 DWQTFLFANLLGFKRTDTGLRKYRSAYIQVA--RKNAKSTVAAVLANWFLLMESGQQDIY 128 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 A ++ + + + P L + +L+ + Sbjct: 129 TAAVSRDQARIVFDDARQMCLLSP--------PLRKRLNIQQHKLINPKSNSLMRPLAAK 180 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232 T P DE D S L P + Sbjct: 181 SSTIEGTNPS-----------LAIVDEYHLHTDNSVYSALELGQGARPEGLLFAITTAGS 229 Query: 233 LNGWFYDIFNIP---------------------------LEDWKRYQIDTRTVEGIDSGF 265 + + + I Sbjct: 230 NVISACKQHYDYCAQILEGNEQNDSLFVLIFELDEESEIDNPENWIKANPNIGKSIPYLD 289 Query: 266 HEGIISRYGLDSDVARIEILGQF---PQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGC 322 E I + + +F Q N+ + A + D L+ +G Sbjct: 290 FENTIKKARGIPSEWVEMLTKRFNVWCQGTTPWLGEGNWAQCARNYTESDLLHQDCYLGL 349 Query: 323 DIAGEGGDKTVVV--FRRGNIIEHIF 346 D++ D T + F +G + I Sbjct: 350 DLSST-NDLTSLCYTFPQGKKVRLIT 374 >gi|302035564|ref|YP_003795886.1| hypothetical protein NIDE0175 [Candidatus Nitrospira defluvii] gi|300603628|emb|CBK39959.1| protein of unknown function [Candidatus Nitrospira defluvii] Length = 673 Score = 45.3 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 49/156 (31%), Gaps = 2/156 (1%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL--IS 103 EH ++P Q + AV V +P + +SA G GK++ A + + Sbjct: 24 EHGNRPDAAQQLALRAVHNQLAGMVTEGSPMQGRWCLSAPIGFGKSSAVAAFLSAARQLG 83 Query: 104 TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163 +++ A QL + A ++ + R + + + E E + Sbjct: 84 FLGKLTVTIAAARVEQLYDFEEAILNAGIPKSEIRQYVSVLHKDKNAKRNSDEDREAPVL 143 Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + E + V DE Sbjct: 144 LITHEKMRRVYARPERNVIDRKPVYFLKRDLVVWDE 179 >gi|331701881|ref|YP_004398840.1| Terminase [Lactobacillus buchneri NRRL B-30929] gi|329129224|gb|AEB73777.1| Terminase [Lactobacillus buchneri NRRL B-30929] Length = 631 Score = 45.3 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 41/317 (12%), Positives = 89/317 (28%), Gaps = 55/317 (17%) Query: 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL----ISTRPGMS 109 WQ + +++ R GK+ L ++L+ S + Sbjct: 108 WQQAILCLSQGWRTKEDKQKRFERCMVSVA--RTNGKSYLLNILILYAYLVEASDQFNAD 165 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 + +A + Q K + W + + + L F L + + + +S ++ Sbjct: 166 LCYLAPVDKQSKKS-WRYIKQTFNSLQSMPGFR--KLIKDQNIAINDDVLKSTKTQNQIL 222 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEA---SGTPDIINKSILGFFTELNPNRFWIM 226 +T + + H + DE + D+I+K G N F+I Sbjct: 223 RMTAGSAQLD---------AFHFLFATVDEYGDENFNSDVISKVTSGQVQTSNRQTFFIS 273 Query: 227 T--SNTR----RLNGWFYDIFNIPLED---------WKRYQIDTRTVE--GIDSGFH--- 266 T SN + + W++ D + S Sbjct: 274 TAYSNPKVPMYSDVRRLTKVMEKDSNRTEDSTLALIWQQDDQDEVENPETWVKSNPLLDL 333 Query: 267 -------------EGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 E + L + Q + ++ I++++ + D Sbjct: 334 PAKHDTLLKGLISERDSKLEDGTLNDFINRNLNMWLQTAKDKYLKLEDIQKSVVSDFEID 393 Query: 314 LYAPLIMGCDIAGEGGD 330 +G D++ D Sbjct: 394 -NQDCYVGFDLSHASDD 409 >gi|239617069|ref|YP_002940391.1| CRISPR-associated helicase Cas3 [Kosmotoga olearia TBF 19.5.1] gi|239505900|gb|ACR79387.1| CRISPR-associated helicase Cas3 [Kosmotoga olearia TBF 19.5.1] Length = 776 Score = 45.3 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 52/319 (16%), Positives = 83/319 (26%), Gaps = 47/319 (14%) Query: 4 LISTDQKLEQELHEMLMHAECVLSFKNFVMRF--FPWGIKGKPLEHFSQPHRWQLEFMEA 61 + D+ + E + + SF ++ W K +P + + Sbjct: 173 EDNVDEWQD-EFQDHFYEVNDIQSFILYMYLSSLLDWADK-TDAAFRDRPLPKRDPIPKD 230 Query: 62 VDVHCHSNVNNSNPTI-------------------FKCAISAGR-GIGKT-TLNA-WMML 99 + + NP F I GR GIGKT TL + + L Sbjct: 231 LVEEYRKVLGFDNPGRDPMNQLRNKFYHEATNDTDFSIGILKGRTGIGKTLTLFSLGLKL 290 Query: 100 WLISTRPG--MSIICIAN---SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWY 154 T II Q K P + Q Sbjct: 291 REKLTNSDYVPRIIYCLPFLSIIDQTYEVAVELFEKTGRSFPTENQVLQQHHLSDIEYST 350 Query: 155 AELL-----EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG-----MAVFNDEASGTP 204 E + I+S + I T+ F N V DE P Sbjct: 351 KEGEGYEKYLADLLINSWNSEIIITTFVSFFHSIFTNKRNMKFFRIPGSIVLLDEIQAIP 410 Query: 205 DIINK---SILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NIPLEDWKRYQIDTRTV 258 + IL + +F T+ + G IPL+ + + I T Sbjct: 411 PKYWELTGKILKLLADYGGTKFVFSTATMPKCFGISGKHLYTGEIPLDRFDLHYIGEVTF 470 Query: 259 EGIDSGFHEGIISRYGLDS 277 E F ++ + +S Sbjct: 471 EKFKEIFLREVVEKARDES 489 >gi|270293260|ref|ZP_06199471.1| putative helicase [Streptococcus sp. M143] gi|270279239|gb|EFA25085.1| putative helicase [Streptococcus sp. M143] Length = 880 Score = 45.3 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 24/191 (12%), Positives = 60/191 (31%), Gaps = 20/191 (10%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 ++Q E ++ + + ++A G GKTT+ ++ P + ++ Sbjct: 14 RKYQKEVLDRFQDYQADRHVH--------LVAAP-GSGKTTIGIELIARF--GNPALVLV 62 Query: 112 CIANSETQLKNTL---WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 Q + + + E + +S L ++ EM++L++ + + Q + Sbjct: 63 PTVTIREQWVDRIQTAFLENEQKISDLVSQNLKEMKALTIVTYQAFHSAMNQLQTQEDGE 122 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 D + DE + KS+ F + + +T+ Sbjct: 123 AEDFV------GFDLLASLRTQKVATLCLDECHHLRNEWWKSLEAFRKQYEQLQVISLTA 176 Query: 229 NTRRLNGWFYD 239 + Sbjct: 177 TPPYDSEPELW 187 >gi|162329501|ref|YP_001604300.1| putative helicase [Acidianus filamentous virus 8] gi|157310618|emb|CAJ31696.1| putative helicase [Acidianus filamentous virus 8] Length = 564 Score = 45.3 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 36/282 (12%), Positives = 73/282 (25%), Gaps = 48/282 (17%) Query: 18 MLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTI 77 +L +E + F F L++F +P +Q + ++ + Sbjct: 153 LLNISEIKIQP--FANLQF----YDITLKNF-EPREYQ---LNSIKQWINDVNIVGTG-- 200 Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 I A G GK+ + L ++ + I+ NS T LK Sbjct: 201 ---IIKAPTGSGKSVIAIMSALEMLKNKRNAKIVYAVNSTTLLKQ--------------- 242 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN--THGMAV 195 F + + + YS+++ + + + + Sbjct: 243 FQQFAKKEDLDFAIVSGELNELKKEKDANLIALSISYYYSQKKRNKHDELRDIVNNADLI 302 Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG-------------WFYDIFN 242 DEA TP SI + + +T+ R +G + + Sbjct: 303 IIDEAHHTP---ASSIKALLLDSPGSIRLGLTATPFREDGRDLEIHGLLGRVSYSINYQE 359 Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 + + I E I + Sbjct: 360 LVKNHYLVPLEYIAFTPEIPKKLKEKIKRLEKEKENTEFARY 401 >gi|331017153|gb|EGH97209.1| hypothetical protein PLA106_13994 [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 684 Score = 45.3 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 32/295 (10%), Positives = 65/295 (22%), Gaps = 28/295 (9%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA--NSETQLKNTLWAEVSKWLSM-LPHR 138 I R +G T A + A ++ + A W + L Sbjct: 177 ILKSRQVGLTYYFAGEAFMDAVLTGDNQVFLSASRAQSEIFRSYIIAFAQAWFGLELTGN 236 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT----CRTYSEERPDTFVGPHNTHGMA 194 + + + H + R + + + Sbjct: 237 PIVLSKDGKPWAELRFLSTNSSTAQGHHGHVYVDEYFWIRDFEKLNTVASAMATHKKWRK 296 Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254 + S G + + + + P W++ Sbjct: 297 TYFSTPSAVSHQAYPFWQGEKFRNSKRK---AAKDPWPSDKQISAGALCPDGQWRKVITI 353 Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR------ 308 + G F + D D + + +F + F +E S Sbjct: 354 LDAIAGGCDLFDLEQLQLEYDD-DKFQQLFMCKFIDSSQSAF-SLADLERCYSDLSLWAD 411 Query: 309 ----EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGN------IIEHIFDWSAKLI 353 + +P+ +G D + D T VV I W + Sbjct: 412 FDPDDPRPYGNSPVWIGYDPSRTRDDATCVVIAPPLENGGKFRILEKHSWRGQSF 466 >gi|307290093|ref|ZP_07570017.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis TX0411] gi|306498935|gb|EFM68429.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis TX0411] Length = 434 Score = 45.3 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 28/253 (11%), Positives = 71/253 (28%), Gaps = 23/253 (9%) Query: 94 NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153 A +++ + R ++ + I + ++ +++ ++ + +F++ + Sbjct: 49 IAHIIV-QLIMRYPVNAVAIRYVDNTIELSIFEQIKWAIEEQGVSKYFKVNKSPMK---- 103 Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSIL 212 + + I R + + +E A + K+I Sbjct: 104 --------ITYKPRGNYIVFRGAQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTIT 155 Query: 213 GFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDWKRYQIDTRTVEGIDSGF 265 + + N R W + E+ + + I F Sbjct: 156 NSLLRGELADGLFYKFFYSYNPPKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAF 215 Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325 E + + + A E G+ V F I+ + + + + + G D Sbjct: 216 IEEVNATRAKNPKRAEWEYDGKAIGSGVVPFDNLRVIKGCI-TDEMVANFDNIRNGLDF- 273 Query: 326 GEGGDKTVVVFRR 338 G D V Sbjct: 274 GYATDPLAFVRWH 286 >gi|227358314|ref|ZP_03842655.1| possible terminase large subunit [Proteus mirabilis ATCC 29906] gi|227161650|gb|EEI46687.1| possible terminase large subunit [Proteus mirabilis ATCC 29906] Length = 553 Score = 45.3 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 28/265 (10%), Positives = 62/265 (23%), Gaps = 30/265 (11%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 WQ A V ++ ++ A I R K+T+ A + W + G Sbjct: 70 EPWQQ---FAFANLLGFKVISTGRRKYRSAYIQVPRKNAKSTVAAILANWFLVMENGQQD 126 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 I A ++ + + + + Q + + Sbjct: 127 IYTAAVSRDQARIVFDDARQMC---------------VLSKPLKKRVAIQQHKVINPKRN 171 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 + + + T+ DE PD S L P + + Sbjct: 172 SLLKPLAAKAAT----IEGTNPSLAIVDEYHLHPDNAVYSALELGMGARPEGILFAITTS 227 Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL-GQFP 289 D+ + + +D + I+ Sbjct: 228 GSNVISACKQHY----DYCCQILAGEEQNESLFALIYELDDEKEIDDERLWIKANPNLNV 283 Query: 290 QQEVNNFIPHNYIEEAMSREAIDDL 314 + + + I++A + Sbjct: 284 SVDGDALY--DTIQKARGIPSQWTE 306 >gi|6739656|gb|AAF27357.1|AF198256_11 phage D3 terminase-like protein [Haemophilus influenzae] Length = 555 Score = 45.3 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 30/279 (10%), Positives = 61/279 (21%), Gaps = 35/279 (12%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ + ++ ++ R K+T+ A + W + G I Sbjct: 71 DWQTFLFANLLGFKRTDTGLRKYRSAYIQVA--RKNAKSTVAAVLANWFLLMESGQQDIY 128 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 A ++ + + + P L + +L+ + Sbjct: 129 TAAVSRDQARIVFDDARQMCLLSP--------PLRKRLNIQQHKLINPKSNSLMRPLAAK 180 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232 T P DE D S L P + Sbjct: 181 SSTIEGTNPS-----------LAIVDEYHLHTDNSVYSALELGQGARPEGLLFAITTAGS 229 Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292 D+ ++ + +D+ I+ + Sbjct: 230 NVISACKQHY----DYCAQILEGNEQNDSLFVLIFELDEESEIDNPENWIKANPNIGKST 285 Query: 293 -----VNNF-----IPHNYIEEAMSREAIDDLYAPLIMG 321 N IP ++E R + +G Sbjct: 286 PYLDFENTIKKARGIPSEWVEMLTKRFNVWCQGTTPWLG 324 >gi|58261824|ref|XP_568322.1| hypothetical protein CNM01670 [Cryptococcus neoformans var. neoformans JEC21] gi|134118443|ref|XP_772108.1| hypothetical protein CNBM1540 [Cryptococcus neoformans var. neoformans B-3501A] gi|50254715|gb|EAL17461.1| hypothetical protein CNBM1540 [Cryptococcus neoformans var. neoformans B-3501A] gi|57230495|gb|AAW46805.1| conserved hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] Length = 1528 Score = 45.3 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 26/186 (13%), Positives = 60/186 (32%), Gaps = 25/186 (13%) Query: 49 SQP-HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107 + P +Q E + + ++ G+GKT + +ML P Sbjct: 290 NHPKRDYQFEIIRN-------------CFLDNTLVALPTGLGKTFVAGVVMLNFYRWFPT 336 Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 I+ +A + V++ + + ++ A + + + + Sbjct: 337 GKIVFLAPTR--------PLVAQQIEACQLSCGIPSRDAAIMTGEGGARKGRERLWEEKR 388 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP-DIINKSILGFFTELNPNRFWIM 226 + T +T + + V P + V DEA + +I+ + T +P + Sbjct: 389 VFYCTPQTLDNDLKNGAVDPR--DIVLVVLDEAHKATGNYAYTTIVAYITAHHPYFRVLA 446 Query: 227 TSNTRR 232 + T Sbjct: 447 LTATPG 452 >gi|314967404|gb|EFT11503.1| conserved domain protein [Propionibacterium acnes HL082PA2] Length = 233 Score = 45.3 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 22/208 (10%), Positives = 49/208 (23%), Gaps = 10/208 (4%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE--VSKWLSMLPHRHWFE 142 R GK + + L+ + + G I+ A+ + + P + Sbjct: 3 PRQNGKNAILEVVELFKATIQ-GRRILHTAHELKSARKAFMRLRSFFENERQFPDLYR-M 60 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 ++S+ L K E + + DEA Sbjct: 61 VKSIRATNGQEAIVLHHPDCATFEKKCGCPGWGSVEFVARSRGSARGFTVDDLVCDEAQE 120 Query: 203 TPDIINKSILGFFT-ELNPNRFWIMTSNTRRL---NGWFYDIFNIPLEDWKRYQIDTRTV 258 D +++L + + + I + L KR+ ++ Sbjct: 121 LSDEQLEALLPTVSAAPSGDPQQIFLGTPPGPLADGSVVLRLRGQALSGGKRFAWTEFSI 180 Query: 259 EGIDSGFH--EGIISRYGLDSDVARIEI 284 G + + Sbjct: 181 PDESDPDDVSRQWRKLAGDTNPALGRRL 208 >gi|256015606|ref|YP_003105615.1| type I restriction-modification enzyme, R subunit [Brucella microti CCM 4915] gi|255998266|gb|ACU49953.1| type I restriction-modification enzyme, R subunit [Brucella microti CCM 4915] Length = 967 Score = 45.3 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 41/295 (13%), Positives = 82/295 (27%), Gaps = 32/295 (10%) Query: 7 TDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHC 66 T + L +L A + +NFV+ G + K L + Q AV Sbjct: 218 TQTGQDILLAGLLAPANLLDLIRNFVVFETIGGRRIKKLARYQQ--------FVAVGKAI 269 Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM--LWLISTRPGMSIICIANSETQLKNTL 124 NP I +G GK+ ++ L + +I+ + + Sbjct: 270 ERIRTAPNPQRRGGVIHHTQGSGKSLTMVFLATKLRRLPEAENPTIVIVTDRTDLDDQIT 329 Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR-TYSEERPDT 183 F+ + + L +++ + +T + P Sbjct: 330 --------------GQFQRSGFANPIQAESGDSLRKALSGGAGTTVLTTVHKFHSAVPKR 375 Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR--RLNGWFYDIF 241 + V DEA ++ PN I + T + + + F Sbjct: 376 SSVISKARNVFVMVDEAH---RTQYGALAARMRAGLPNACMIAFTGTPIDKKDRSTREAF 432 Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 L + + + + E +R +D E+ FP+ + Sbjct: 433 GDYLHRY-LIDQAVKDGATVPIYY-EMRDARIRIDGRDFEREVRAAFPELSEDEI 485 >gi|145632703|ref|ZP_01788437.1| putative terminase of prophage [Haemophilus influenzae 3655] gi|144986898|gb|EDJ93450.1| putative terminase of prophage [Haemophilus influenzae 3655] Length = 555 Score = 45.3 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 21/177 (11%), Positives = 40/177 (22%), Gaps = 21/177 (11%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ+ + + ++ R K+T+ A + W + G I Sbjct: 71 DWQVFLFANILGFKRKDTGLRKYRSAYVQVA--RKNAKSTVAAVLANWFLVMEGGQQDIY 128 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 A ++ + + + P L + +L+ + Sbjct: 129 TAAVSRDQARIVFDDARQMCLLSPL--------LKKRLNIQQHKLINPKNNSIMRPLAAK 180 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 T P DE D S L P + Sbjct: 181 SSTIEGTNPS-----------LAIVDEYHLHTDNSVYSALELGQGARPEGLLFAITT 226 >gi|171690334|ref|XP_001910092.1| hypothetical protein [Podospora anserina S mat+] gi|170945115|emb|CAP71226.1| unnamed protein product [Podospora anserina S mat+] Length = 1993 Score = 45.3 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 16/126 (12%), Positives = 28/126 (22%), Gaps = 16/126 (12%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + G GKT M W PG ++ IA + ++ + + Sbjct: 1159 NVLLGSPTGSGKTVAAELAMWWAFREHPGSKVVYIAPMKALVRERV-------------K 1205 Query: 139 HWFEMQSLSLHPSGWY-AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN--THGMAV 195 W + + L I + V Sbjct: 1206 DWGDRLAKPLGLRLVELTGDNTPDTRTIQDADIIITTPEKWDGISRSWQTRGYVRKVSLV 1265 Query: 196 FNDEAS 201 DE Sbjct: 1266 VIDEIH 1271 >gi|323146172|gb|ADX32410.1| terminase ATPase subunit [Cronobacter phage ENT90] Length = 587 Score = 45.3 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 33/318 (10%), Positives = 80/318 (25%), Gaps = 27/318 (8%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 FM+ + + + + + R IG T A L T G + I ++ S+ Sbjct: 140 FMDNCFEYQLNWHKAGLDHRIRNILKS-RQIGATFYFAREALIDALTT-GRNQIFLSASK 197 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177 Q + + + + L + ++ + + + + Sbjct: 198 AQAH-VFKNYIIDFARQVDVDLKGDPIVLPNGARLIFLGTNVRTAQSYTGNLYLDEYFWI 256 Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL---NPNRFWIMTSNTRRLN 234 + + + TP ++ S F++ R + Sbjct: 257 PKFQELRKVASGMSLHKKWRTTYFSTPSSLSHSAYPFWSGELFNKGRRSKADRIEIDLSH 316 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294 W++ + G + F + S+ + ++ +F + Sbjct: 317 THLAKGALCGDGQWRQIVTVEDALTGGCNLFDLDQLQLEYSPSE-YQNLLMCEFVD-DEA 374 Query: 295 NFIPHNYIEEAMSREAI-----------DDLYAPLIMGCDIAGEGGDKTVVVFRRGN--- 340 + P ++ M Y P+ +G D + G D Sbjct: 375 SVFPFAELQTCMIDSLEEWSDFNPYLPRPFDYRPVWIGYDPSHTG-DSAGCAVIAPPLVA 433 Query: 341 ----IIEHIFDWSAKLIQ 354 + W Sbjct: 434 GGKFRVLERHQWRGMDFA 451 >gi|207344536|gb|EDZ71650.1| YHR164Cp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 1435 Score = 45.3 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 25/173 (14%), Positives = 51/173 (29%), Gaps = 6/173 (3%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTT+ A ++ I G ++ + + + + N L + +S++ ++ Sbjct: 1077 GTGKTTVIAEII--KILVSEGKRVLLTSYTHSAVDNILIKLRNTSISIMRLGMKHKVHPD 1134 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + YA + + + + T T D + V DEAS Sbjct: 1135 TQKYVPNYASVKSYNDYLSKINSTSVVATTCLGINDILFTLNEKDFDYVILDEASQIS-- 1192 Query: 207 INKSILGFFTELNPNRFWIMTSN-TRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 LG N + + + +K + Sbjct: 1193 -MPVALGPLRYGNRFIMVGDHYQLPPLVKNDAARLGGLEESLFKTFCEKHPES 1244 >gi|331091430|ref|ZP_08340268.1| PBSX family phage terminase [Lachnospiraceae bacterium 2_1_46FAA] gi|330403986|gb|EGG83536.1| PBSX family phage terminase [Lachnospiraceae bacterium 2_1_46FAA] Length = 441 Score = 45.3 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 31/267 (11%), Positives = 71/267 (26%), Gaps = 44/267 (16%) Query: 79 KCAISAGR-GIGKTTL-NAWMMLWLISTR---PGMSIICIANSETQLKNTLWAEVSKWLS 133 + + +G GK+ + A+++ + I R PG+++I + E+ +N L + Sbjct: 17 RWNVKSGAVRSGKSYVDTAFVIPFRIRERAGKPGLNVILGVSKESIERNVLQPMREIYTD 76 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 L + ++ E+ Sbjct: 77 KLIGN---------------------INNRNVARICGEDVYCLGAEKISQVAKIQGASIK 115 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS-NTRRLNGWFYDIFNIPLEDWKRYQ 252 + DE + + + + + S N W + + D + Sbjct: 116 YCYGDEVAKWNKEVFQMLKSRL---DKPYSCFDGSCNPEHPTHWLKEFLDNDELDIYLQR 172 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ----------QEVNNFIPHNYI 302 + F + + Y + ILG + + + F Sbjct: 173 YTIFDNPFLPEEFVQQLCKEY-EGTIYYDRLILGLWKRAEGAIYKRFADNPDKFRCEVVD 231 Query: 303 EEAMSREAIDDLYAPLI---MGCDIAG 326 E M + ++ +G D G Sbjct: 232 ELTMETDIKQFRKDDIVSIEIGLDFGG 258 >gi|320168199|gb|EFW45098.1| DEAD box polypeptide 49 [Capsaspora owczarzaki ATCC 30864] Length = 611 Score = 45.3 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 55/199 (27%), Gaps = 32/199 (16%) Query: 38 WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97 W +K P Q+ ++ V A G GKT A Sbjct: 188 WLVKQCEAMGLKHPTDIQVNTIKHVLAG------------RNVIGCAKTGSGKTAAFALP 235 Query: 98 MLWLISTRP-GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156 +L +S P G + + + AE + L + L + Sbjct: 236 ILHRLSDDPYGPFAVVLTPTRELAFQI--AEQFRALGKGIN--------LREAVVVGGVD 285 Query: 157 LLEQSMGIDSKHYTITCRTYSEERP-DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 +++QS+ + + + I ++ + DEA + Sbjct: 286 MMQQSLVLAKRPHVIIATPGRLADHLNSNSQLSLARARFLVLDEADRLLEEGF------- 338 Query: 216 TELNPNRFWIMTSNTRRLN 234 + NR SN +R Sbjct: 339 -SPDLNRILAAASNPQRQT 356 >gi|220919093|ref|YP_002494397.1| type III restriction protein res subunit [Anaeromyxobacter dehalogenans 2CP-1] gi|219956947|gb|ACL67331.1| type III restriction protein res subunit [Anaeromyxobacter dehalogenans 2CP-1] Length = 1033 Score = 45.3 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 34/213 (15%), Positives = 64/213 (30%), Gaps = 33/213 (15%) Query: 43 KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102 P +P+ +Q +E + V +K + A G GKT + A+ + Sbjct: 306 TPFFFDLRPYEYQRAILEKL------RVEREEHGRWKNLVVAATGTGKTMIAAFDYAAQV 359 Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162 ++ +A+ E L+ L A + ++L + E+ P+ + Sbjct: 360 KDGVRPRLLFVAHREEILEQALHA----FRNVLRDHSFGELLKGGSTPASYEH------- 408 Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222 + S +R D + V DE +L P Sbjct: 409 --------LFATIQSLDRKDLPAALGRDYWHTVIVDEFHHAAAKTYGLLLEAVA---PKI 457 Query: 223 FWIMTSNTRRLN-----GWFYDIFNIPLEDWKR 250 +T+ R + GWF + W Sbjct: 458 LLGLTATPERADGLDVLGWFDHHVAADIRLWHA 490 >gi|28897279|ref|NP_796884.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus RIMD 2210633] gi|260876244|ref|ZP_05888599.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AN-5034] gi|260896422|ref|ZP_05904918.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus Peru-466] gi|260902727|ref|ZP_05911122.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ4037] gi|28805488|dbj|BAC58768.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus RIMD 2210633] gi|308088406|gb|EFO38101.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus Peru-466] gi|308092964|gb|EFO42659.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AN-5034] gi|308107646|gb|EFO45186.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ4037] gi|328472043|gb|EGF42920.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus 10329] Length = 407 Score = 45.3 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 45/318 (14%), Positives = 83/318 (26%), Gaps = 50/318 (15%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 + + +P + Q E + SA G GKT L Sbjct: 16 EAIEEMGYERPTKIQAEAIPQALDG------------RDILASAPTGTGKTAAFVLPALQ 63 Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 + P I+ + + A+ ++ L+ + F + + Sbjct: 64 YLQDFPRRKPGPARILILTPTRELAMQV--ADQARALAKNTKLNIFTITGGVQYQEHADI 121 Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 Q + + + DEA D+ + Sbjct: 122 LATTQDI--------VVATPGRLREYIDAERFDCRAIEWLVLDEADRMLDMGFAPTVDRL 173 Query: 216 TELNPNRFWIMTSNTR----RLNGWFYDIFNIP---------LEDWKRYQIDTR-TVEGI 261 + R + + + G+ D+ N P E K Q R Sbjct: 174 SNECRWRKQTLLFSATLEGKGVEGFTADLLNEPAEIDAKSPLRERKKIAQWYHRADSAEH 233 Query: 262 DSGFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AID 312 + II+ + V E L + Q + IP ++I E R Sbjct: 234 KLALLKHIITEQAERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAIARFR 293 Query: 313 DLYAPLIMGCDIAGEGGD 330 D +++ D+A G D Sbjct: 294 DGTVNVLLATDVAARGID 311 >gi|328854149|gb|EGG03283.1| hypothetical protein MELLADRAFT_49560 [Melampsora larici-populina 98AG31] Length = 1103 Score = 45.3 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 32/229 (13%), Positives = 64/229 (27%), Gaps = 24/229 (10%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + + +S A++A RG GK+ + + +I + Sbjct: 270 QAKALMEFTSSITEKTLSST-----VALTAARGRGKSAAL-GLAITAAIAHSYSNIFVTS 323 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 S LK + + K L + + + W+ ++ + + + Sbjct: 324 PSPENLKTV-FEFIFKGLDAIGYEEHLDYDIHQSTNPEWHNCVVRIDIFRQHR------Q 376 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 T P + V DEA+ P K+++G + F T N Sbjct: 377 TIQYIEPQDYKVLG--QAELVVIDEAAAIPIGFVKNLIGPYL-----VFMASTINGYEGT 429 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283 G + I + V + + D V + Sbjct: 430 GRSLSLKLIAQLRELSRKP----VPITTATNRDQEDGPSSTDKAVTHQK 474 >gi|320035315|gb|EFW17257.1| conserved hypothetical protein [Coccidioides posadasii str. Silveira] Length = 1870 Score = 45.3 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 28/283 (9%), Positives = 71/283 (25%), Gaps = 40/283 (14%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +P WQ + ++ +D + A GKT ++ + M ++ Sbjct: 825 EPDEWQRKVLDEIDA------------KRSLFVVAPTSAGKTFISFYAMKKVLEDDDDGV 872 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ +A ++ + +++ H + + + + + Sbjct: 873 LVYVAPTKALVNQIAAEIQARFSKSFKHGGKSVWGIHTRDYRINNPTGCQVLVTV---PH 929 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 + S ++ ++ + DE + + + L I S Sbjct: 930 ILQIMLLSPANATSW----SSRVKRIIFDEVHCIGQVDDGVVWEQLLLL-APCPIIALSA 984 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 T F + + + S + + S E + Sbjct: 985 TIGNPQKFCKWLQMTQKA-NGIDLTMIEHSHRYSDLRKYVYKPPKSISGSGSFERM---- 1039 Query: 290 QQEVNNFIPHNYIEEAMSREAID-------DLYAPLIMGCDIA 325 P + EA + P+ D A Sbjct: 1040 --------PDDLTLEARDCWMLWRAMMKYQSQDFPVEKYLDPA 1074 >gi|218700350|ref|YP_002407979.1| putative phage terminase large subunit [Escherichia coli IAI39] gi|218370336|emb|CAR18139.1| putative phage terminase large subunit [Escherichia coli IAI39] Length = 553 Score = 45.3 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 33/261 (12%), Positives = 56/261 (21%), Gaps = 27/261 (10%) Query: 23 ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82 E V F F +KG + WQ + T + Sbjct: 43 EVVERFIAFSRV--CPHVKGPMRGRPIELEPWQQFAFACILGFKVKATGRRKYTSAFIEV 100 Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 R K+T A + W + G I A ++ + + Sbjct: 101 --PRKNAKSTTAAILANWFLIMENGQQDIYTAAVSRDQARIVFDDARQMC--------LL 150 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 + L + +++ K T P DE Sbjct: 151 SRPLRRRVNIQAHKVIHPKSNSLLKPLAAKAATIEGTNPS-----------LSIVDEYHL 199 Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262 PD S L P + + D+ +D V Sbjct: 200 HPDNGVYSALELGMGARPEGLLFAITTSGSNVVSACKQHY----DYCCQILDGEEVNDSI 255 Query: 263 SGFHEGIISRYGLDSDVARIE 283 + +D I+ Sbjct: 256 FVLIYELDDENEVDDPAMWIK 276 >gi|254820583|ref|ZP_05225584.1| type III restriction enzyme, res subunit [Mycobacterium intracellulare ATCC 13950] Length = 1033 Score = 45.3 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 26/188 (13%), Positives = 47/188 (25%), Gaps = 31/188 (16%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PG 107 P +Q E +E + + + I A G GKT + A L+ R Sbjct: 311 HPKPFQEEMLEEL------DAERVLHDRHRNLIVAATGTGKTVVAALDYRRLVRERHGRD 364 Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 + ++ +A+ E+ + E L G Sbjct: 365 LKLLFVAHR---------KEILMQARRMYQEVLTESTFGELLIGG-----------DQPT 404 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227 + + + V DE S + P +T Sbjct: 405 KWRHVFASIQSLSAGRLATIEADYFDVVVIDEFH---HAEAASYRRLLQHVRPMELLGLT 461 Query: 228 SNTRRLNG 235 + R +G Sbjct: 462 ATPERGDG 469 >gi|330967816|gb|EGH68076.1| hypothetical protein PSYAC_24858 [Pseudomonas syringae pv. actinidiae str. M302091] Length = 774 Score = 45.3 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 34/295 (11%), Positives = 65/295 (22%), Gaps = 28/295 (9%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA--NSETQLKNTLWAEVSKWLSM-LPHR 138 I R +G T A + A ++ + A W + L Sbjct: 177 ILKSRQVGLTYYFAGEAFMDAVLTGDNQVFLSASRAQSEIFRSYIIAFAQSWFGLELTGN 236 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT----CRTYSEERPDTFVGPHNTHGMA 194 + + + H + R + + + Sbjct: 237 PIVLSKDGKPWAELRFLSTNSSTAQGHHGHVYVDEYFWIRDFEKLNTVASAMAPHKKWRK 296 Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254 + S G + + + + P W++ Sbjct: 297 TYFSTPSAVSHQAYPFWQGEKFRNSKRK---AAKDPWPSDKQISAGALCPDGQWRKVITI 353 Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS---REAI 311 + G F + D D + + +F + F +E S A Sbjct: 354 LDAISGGCDLFDLEQLQLEY-DEDKFQQLFMCKFIDSSQSAF-SLADLERCYSDLSLWAD 411 Query: 312 DDLYAP-------LIMGCDIAGEGGDKTVVVFRRGN------IIEHIFDWSAKLI 353 D P + +G D + D T VV I W + Sbjct: 412 FDPDDPRLYGNSPVWIGYDPSRTRDDATCVVIAPPLENGGKFRILEKHSWRGQSF 466 >gi|190405942|gb|EDV09209.1| DNA replication helicase [Saccharomyces cerevisiae RM11-1a] Length = 1522 Score = 45.3 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 25/173 (14%), Positives = 51/173 (29%), Gaps = 6/173 (3%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTT+ A ++ I G ++ + + + + N L + +S++ ++ Sbjct: 1077 GTGKTTVIAEII--KILVSEGKRVLLTSYTHSAVDNILIKLRNTSISIMRLGMKHKVHPD 1134 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + YA + + + + T T D + V DEAS Sbjct: 1135 TQKYVPNYASVKSYNDYLSKINSTSVVATTCLGINDILFTLNEKDFDYVILDEASQIS-- 1192 Query: 207 INKSILGFFTELNPNRFWIMTSN-TRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 LG N + + + +K + Sbjct: 1193 -MPVALGPLRYGNRFIMVGDHYQLPPLVKNDAARLGGLEESLFKTFCEKHPEN 1244 >gi|95116637|ref|NP_041153.2| ORF62 [Ictalurid herpesvirus 1] gi|114152910|sp|Q00140|VTER_ICHVA RecName: Full=Probable DNA-packaging protein; AltName: Full=Terminase gi|94449348|gb|AAA88166.2| ORF62 [Ictalurid herpesvirus 1] Length = 734 Score = 45.3 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 44/144 (30%), Gaps = 8/144 (5%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 A R GKTT+ ++L + + + I+ A + TL+ V L + H W+ Sbjct: 189 LAPRQCGKTTIM-VILLAAMISYLDIEIVVQA-QHKTMCETLYDRVELVLHEIQHSPWYP 246 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 ++ + G + + S V DEA+ Sbjct: 247 EENRIVTIKGTTETREFIYDPAYKGTTRVHFLSSS------PNAARGQIPDFVLIDEAAF 300 Query: 203 TPDIINKSILGFFTELNPNRFWIM 226 S+L N + I Sbjct: 301 VNPASLLSLLPLLAVKNRKQIHIS 324 >gi|270209588|gb|ACZ64128.1| terminase [Enterococcus phage phiFL3B] Length = 427 Score = 45.3 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 28/253 (11%), Positives = 71/253 (28%), Gaps = 23/253 (9%) Query: 94 NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153 A +++ + R ++ + I + ++ +++ ++ + +F++ + Sbjct: 42 IAHIIV-QLIMRYPVNAVAIRYVDNTIELSIFEQIKWAIEEQGVSKYFKVNKSPMK---- 96 Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSIL 212 + + I R + + +E A + K+I Sbjct: 97 --------ITYKPRGNYIVFRGAQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTIT 148 Query: 213 GFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDWKRYQIDTRTVEGIDSGF 265 + + N R W + E+ + + I F Sbjct: 149 NSLLRGELADGLFYKFFYSYNPPKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAF 208 Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325 E + + + A E G+ V F I+ + + + + + G D Sbjct: 209 IEEVNATRAKNPKRAEWEYDGKAIGSGVVPFDNLRVIKGCI-TDEMVANFDNIRNGLDF- 266 Query: 326 GEGGDKTVVVFRR 338 G D V Sbjct: 267 GYATDPLAFVRWH 279 >gi|242815191|ref|XP_002486521.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC 10500] gi|218714860|gb|EED14283.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC 10500] Length = 2030 Score = 45.3 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 15/123 (12%), Positives = 32/123 (26%), Gaps = 10/123 (8%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + G GKT M W RPG ++ IA + ++ + + + + + Sbjct: 1159 NVLLGSPTGSGKTVACELAMWWAFRERPGSKVVYIAPMKALVRERVQDWRKRLTAAMGLK 1218 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 E+ + + + + V D Sbjct: 1219 -LVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRGYV---------RQVSLVIID 1268 Query: 199 EAS 201 E Sbjct: 1269 EIH 1271 >gi|71030350|ref|XP_764817.1| hypothetical protein [Theileria parva strain Muguga] gi|68351773|gb|EAN32534.1| hypothetical protein, conserved [Theileria parva] Length = 928 Score = 45.3 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 69/227 (30%), Gaps = 18/227 (7%) Query: 69 NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128 N+ I + RG GK+ + L +I+ +A + + L+ + Sbjct: 265 NIILEESDRKIVTILSDRGRGKSATI-GLFLSSALQLDFRNILIVAPNVENVST-LFDFL 322 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188 + L L + Y +L ++ + + P+ Sbjct: 323 QRGLKCLGIDEYSGYTVTRTEGYPSYLKLNKR------NSGVKFMSSTEIKNPE--EFIK 374 Query: 189 NTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW 248 + +EA+ P I + ++ ++ S+T ++ L Sbjct: 375 MFSWDILIIEEAASIPLPIVDVL--------SSKGIVIISSTTGGYEGTGRSISLKLIQK 426 Query: 249 KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN 295 + + + T+ I ++S + + L F + +++ Sbjct: 427 FKKTLSSDTLSEITLKQPIRYARNDPIESWLNSLLCLNTFKDEGIDS 473 >gi|172056647|ref|YP_001813107.1| DEAD/DEAH box helicase domain-containing protein [Exiguobacterium sibiricum 255-15] gi|171989168|gb|ACB60090.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sibiricum 255-15] Length = 391 Score = 45.3 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 26/211 (12%), Positives = 49/211 (23%), Gaps = 15/211 (7%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR-PGMSI 110 W+ E + + A G GKT L LI P + + Sbjct: 10 EAWERARFEKMM-PVQEQAIPLLRERKDVLVEAPTGTGKTLAYVIPALELIDENEPHIQV 68 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + A + + + + + + + EL Q + K Sbjct: 69 VITAPTRELVMQ-----IHQVIQLFSQG-----SGIKSGAFIGGVELKRQHERLKKKPQI 118 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN- 229 I + DEA + + + + Sbjct: 119 IVGTPGRLVELIDSKKMKMHKVKLIVLDEADQIYESGMSASATRIANSALRDRQLAFISA 178 Query: 230 --TRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 R W +F E K ++ + V Sbjct: 179 TLPERTAEWGKTLFANEPERIKVERVMSTQV 209 >gi|291556509|emb|CBL33626.1| Superfamily II DNA/RNA helicases, SNF2 family [Eubacterium siraeum V10Sc8a] Length = 454 Score = 45.3 bits (105), Expect = 0.016, Method: Composition-based stats. Identities = 35/278 (12%), Positives = 74/278 (26%), Gaps = 34/278 (12%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN-AWMMLWLISTRPGM 108 +PH +Q + ++ H + V G+GKT++ A + L + Sbjct: 4 EPHEYQRYAINYIEEHPFAAVLLDM------------GLGKTSITLAAIADLLFDSFEVH 51 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 ++ IA ++T AE+ KW + + S + + + + ++ Sbjct: 52 KVLVIAP-LRVARDTWSAELQKWDQFHQLTYSVAVGSEAERKAALTRKADIYIINRENVQ 110 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 + I V DE S + +K + + + Sbjct: 111 WLIEKSKLP------------FDFDMVVVDELSSFKNHQSKRFKALMQVRPRIKRVVGLT 158 Query: 229 NTRRLNGWFYDIFNIPL-------EDWKRYQIDTRTVEGIDSGFH-EGIISRYGLDSDVA 280 T NG + + Y V +G + G + + Sbjct: 159 GTPASNGLMDLWAEFKVIDMGKRLGRFITYYRQEYFVPDATNGQIVYSYRPKLGAEQAIY 218 Query: 281 RIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318 R + ++ I D Sbjct: 219 RQISDITISMKSTDHLKMPKLISSEYKVYLSPDEQDAY 256 >gi|269839449|ref|YP_003324141.1| NERD domain protein [Thermobaculum terrenum ATCC BAA-798] gi|269791179|gb|ACZ43319.1| NERD domain protein [Thermobaculum terrenum ATCC BAA-798] Length = 559 Score = 45.3 bits (105), Expect = 0.016, Method: Composition-based stats. Identities = 21/179 (11%), Positives = 46/179 (25%), Gaps = 5/179 (2%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 Q E + N+ + + A++ G GKT L G+ ++ Sbjct: 208 EAQNRRFEELTQG-QRNILLAMSEYRRLAVAGCAGSGKTFLAMEQA--YRLVSQGLRVLF 264 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP--SGWYAELLEQSMGIDSKHYT 170 ++ + + + H E +++ + + + K Sbjct: 265 TCHNRALADWVRESLTKTLGGLPDNLHVDEFDGVAIELCRRHGVSVPDPERLSEAQKTEF 324 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 AV DEA + +LG + +I + Sbjct: 325 YRETLPELLDTALGHMTQEDKFDAVVVDEAQDFHVLRWGPLLGLLKDPGEGHLYIFYDS 383 >gi|194901062|ref|XP_001980071.1| GG16932 [Drosophila erecta] gi|190651774|gb|EDV49029.1| GG16932 [Drosophila erecta] Length = 2183 Score = 45.3 bits (105), Expect = 0.016, Method: Composition-based stats. Identities = 21/175 (12%), Positives = 42/175 (24%), Gaps = 20/175 (11%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L F+ + Q + + H + A G GKT + + ++ Sbjct: 1331 LYKFTHFNPIQTQIFHCLYHTDH-----------NVLLGAPTGSGKTIVAEIAIFRALNQ 1379 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 P ++ IA + +K + ++ E+ E Sbjct: 1380 NPKCKVVYIAPLKALVKERIGDWEQRFQRSSLGLKVVELTGDVTPDIQAIRESQLIVTTP 1439 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219 + E H + DE + I + N Sbjct: 1440 EKWDGISRSWQTREYV---------QHVSLIVIDEIHLLGEDRGPVIEVIVSRTN 1485 >gi|333008357|gb|EGK27831.1| phage Terminase family protein [Shigella flexneri K-272] gi|333019844|gb|EGK39116.1| phage Terminase family protein [Shigella flexneri K-227] Length = 553 Score = 45.3 bits (105), Expect = 0.016, Method: Composition-based stats. Identities = 33/261 (12%), Positives = 56/261 (21%), Gaps = 27/261 (10%) Query: 23 ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82 E V F F +KG + WQ + T + Sbjct: 43 EVVERFIAFSRV--CPHVKGPMRGRPIELEPWQQFAFACILGFKVKATGRRKYTSAFIEV 100 Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 R K+T A + W + G I A ++ + + Sbjct: 101 --PRKNAKSTTAAILANWFLIMENGQQDIYTAAVSRDQARIVFDDARQMC--------LL 150 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 + L + +++ K T P DE Sbjct: 151 SRPLRRRVNIQAHKVIHPKSNSLLKPLAAKAATIEGTNPS-----------LSIVDEYHL 199 Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262 PD S L P + + D+ +D V Sbjct: 200 HPDNGVYSALELGMGARPEGLLFAITTSGSNVVSACKQHY----DYCCQILDGEEVNDSI 255 Query: 263 SGFHEGIISRYGLDSDVARIE 283 + +D I+ Sbjct: 256 FVLIYELDDENEVDDPAMWIK 276 >gi|261492408|ref|ZP_05988965.1| phage Terminase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495943|ref|ZP_05992361.1| phage Terminase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308403|gb|EEY09688.1| phage Terminase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311937|gb|EEY13083.1| phage Terminase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 567 Score = 45.3 bits (105), Expect = 0.016, Method: Composition-based stats. Identities = 35/321 (10%), Positives = 80/321 (24%), Gaps = 59/321 (18%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL--ISTRPGMS 109 WQL + + N + + R GK+ ++A + L++ + G Sbjct: 81 EPWQLFIVANAFGWLRKSNN--LRRYREIYVEVPRKNGKSAISAGVGLYMFCMDNEFGAE 138 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM-GIDSKH 168 + A +E Q + L S + E+ ++ Sbjct: 139 VYSGATTEKQAWEVFRP------------ARLMCKKTDLLCSTFGIEVNASNLNRPSDGS 186 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPNRFWIMT 227 + DE D + ++L +I+T Sbjct: 187 RFEPLIGSPGD---------GASPSCAIVDEYHEHKNDELYTTMLTGMGARKQPLMFIIT 237 Query: 228 SNTRRLNGWFYDIFN----------------------IPLEDWKRYQIDTRTVEGIDSGF 265 + + G YD +DW + + D Sbjct: 238 TAGYNIEGPCYDKRREVIEKLNGAIPNDELFGIIYTIDEDDDWTDESVLRKANPNFDVSV 297 Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY-------IEEAMSREAIDD--LYA 316 + + + + + F + +N ++ E + Sbjct: 298 YGDYL-ISQQNKAINNARLTNTFKTKHLNVWVSAKESFFNMVSWENCKDESLSLNDFQDD 356 Query: 317 PLIMGCDIAGEGGDKTVVVFR 337 + +G D+A + ++V Sbjct: 357 EVYLGLDMARKLDMNSLVKVF 377 >gi|218689523|ref|YP_002397735.1| putative phage terminase large subunit [Escherichia coli ED1a] gi|218427087|emb|CAR07966.2| putative phage terminase large subunit [Escherichia coli ED1a] Length = 553 Score = 45.3 bits (105), Expect = 0.016, Method: Composition-based stats. Identities = 33/261 (12%), Positives = 56/261 (21%), Gaps = 27/261 (10%) Query: 23 ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82 E V F F +KG + WQ + T + Sbjct: 43 EVVERFIAFSRV--CPHVKGPMRGRPIELEPWQQFAFACILGFKVKATGRRKYTSAFIEV 100 Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 R K+T A + W + G I A ++ + + Sbjct: 101 --PRKNAKSTTAAILANWFLIMENGQQDIYTAAVSRDQARIVFDDARQMC--------LL 150 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 + L + +++ K T P DE Sbjct: 151 SRPLRRRVNIQAHKVIHPKSNSLLKPLAAKAATIEGTNPS-----------LSIVDEYHL 199 Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262 PD S L P + + D+ +D V Sbjct: 200 HPDNGVYSALELGMGARPEGLLFAITTSGSNVVSACKQHY----DYCCQILDGEEVNDSI 255 Query: 263 SGFHEGIISRYGLDSDVARIE 283 + +D I+ Sbjct: 256 FVLIYELDDENEVDDPAMWIK 276 >gi|110805154|ref|YP_688674.1| putative terminase of prophage CP-933C [Shigella flexneri 5 str. 8401] gi|110614702|gb|ABF03369.1| putative terminase of prophage [Shigella flexneri 5 str. 8401] Length = 553 Score = 45.3 bits (105), Expect = 0.016, Method: Composition-based stats. Identities = 33/261 (12%), Positives = 56/261 (21%), Gaps = 27/261 (10%) Query: 23 ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82 E V F F +KG + WQ + T + Sbjct: 43 EVVERFIAFSRV--CPHVKGPMRGRPIELEPWQQFAFACILGFKVKATGRRKYTSAFIEV 100 Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 R K+T A + W + G I A ++ + + Sbjct: 101 --PRKNAKSTTAAILANWFLIMENGQQDIYTAAVSRDQARIVFDDARQMC--------LL 150 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 + L + +++ K T P DE Sbjct: 151 SRPLRRRVNIQAHKVIHPKSNSLLKPLAAKAATIEGTNPS-----------LSIVDEYHL 199 Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262 PD S L P + + D+ +D V Sbjct: 200 HPDNGVYSALELGMGARPEGLLFAITTSGSNVVSACKQHY----DYCCQILDGEEVNDSI 255 Query: 263 SGFHEGIISRYGLDSDVARIE 283 + +D I+ Sbjct: 256 FVLIYELDDENEVDDPAMWIK 276 >gi|108797804|ref|YP_638001.1| hypothetical protein Mmcs_0827 [Mycobacterium sp. MCS] gi|119866897|ref|YP_936849.1| hypothetical protein Mkms_0844 [Mycobacterium sp. KMS] gi|108768223|gb|ABG06945.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|119692986|gb|ABL90059.1| conserved hypothetical protein [Mycobacterium sp. KMS] Length = 563 Score = 45.3 bits (105), Expect = 0.016, Method: Composition-based stats. Identities = 22/163 (13%), Positives = 45/163 (27%), Gaps = 6/163 (3%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 + +A+ H + + ++ + + + G G GKT L L G + + Sbjct: 212 EDAADALTEH-QAIILDAIRLLNRVEVRGGAGSGKTFLAMEQARRLAQR--GQRVALVCY 268 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 S L + L W + E +L + + + Sbjct: 269 S-HGLASYLERICETWPRRQQPAYVGEFHALGVQWGAPEGPDEALRTEETVRFWEHDLPL 327 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218 + + H + DEA D +L + Sbjct: 328 HMADLAAQLEPGHRFDS--IVVDEAQDFADAWWDPLLAALRDP 368 >gi|289619804|emb|CBI54087.1| unnamed protein product [Sordaria macrospora] Length = 1773 Score = 45.3 bits (105), Expect = 0.016, Method: Composition-based stats. Identities = 26/248 (10%), Positives = 65/248 (26%), Gaps = 22/248 (8%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +P WQ + ++A+D + A GKT ++ + M ++ Sbjct: 707 EPDAWQRKVLDAIDEDKS------------LLVVAPTSAGKTFISFYAMKKILEANNDDV 754 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ IA ++ + +++ + + + + + Sbjct: 755 LVYIAPTKALVNQIAAEIQARFSKRYDQDAKSVWAIHTRDYRINNVKGCQILVTVPDILQ 814 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM--- 226 + + P +F + DE + L P + Sbjct: 815 ILLLSPSNAAGPTSF----ARRIKRIIFDEVHCIGQSEEGLVWEQLLLLAPCPIIALSAT 870 Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 N W + + + +R + F + +E L Sbjct: 871 VGNPLEFRDWLRNAQKAKGHELEMVVHTSRYSDLR--KFIHDPAPGTYEFTGFEPVERL- 927 Query: 287 QFPQQEVN 294 FP + + Sbjct: 928 PFPGLDSD 935 >gi|186895208|ref|YP_001872320.1| hypothetical protein YPTS_1896 [Yersinia pseudotuberculosis PB1/+] gi|186698234|gb|ACC88863.1| protein of unknown function DUF264 [Yersinia pseudotuberculosis PB1/+] Length = 587 Score = 45.3 bits (105), Expect = 0.016, Method: Composition-based stats. Identities = 33/325 (10%), Positives = 72/325 (22%), Gaps = 34/325 (10%) Query: 60 EAVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 E++ + + ++ + R +G T +W L G + + ++ S+ Sbjct: 142 ESMFDYQRNWYEAGLSPDYRIRNLLKSRQVGATYFFSWEALLDALDT-GRNQMFVSASKA 200 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK----HYTITCR 174 Q + + E+ L + + Sbjct: 201 QAHQ-FKNYIVAAARQVDVDLRGEVIILPNGAEMHFLGTNASTAQGRPGNLYLDEYFWIP 259 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP---NRFWIMTSNTR 231 + + R + + S T G R I S R Sbjct: 260 GFQKLRRAASGMASQKKYRSTYFSTPSSTSHEAYPFWAGTLFNKGKAKDKRIEIDVSYPR 319 Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291 G + + +++ ++G F + D D + F Sbjct: 320 LAGGRLCED-----KQYRQIVTIEDALKGGCDLFDIDELRNENSDQD-FENLFMCGFIDD 373 Query: 292 EVNNFIPHNYIEEAMSREAIDD----------LYAPLIMGCDIAGEGGDKTVVVFRRGNI 341 + F + P+ +G D A G D + Sbjct: 374 NASTFKLAEMQRCMVDSWEKWTDVKLLALRPFGDRPVWIGYDPASTG-DSAGCAVIAPPV 432 Query: 342 -------IEHIFDWSAKLIQETNQE 359 + W + Sbjct: 433 VAGGKFRVLERHQWKGMDFADQASN 457 >gi|296271906|ref|YP_003654537.1| type III restriction protein res subunit [Arcobacter nitrofigilis DSM 7299] gi|296096081|gb|ADG92031.1| type III restriction protein res subunit [Arcobacter nitrofigilis DSM 7299] Length = 923 Score = 45.3 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 56/188 (29%), Gaps = 37/188 (19%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q E + + H K + A G GKT L A + + ++ I Sbjct: 190 QEEALYNLQ-HLRDKRQT------KALVLAATGTGKTYLAA----FDVKAYEPKRVLFIV 238 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 + +N L + + ++ ++ ID ++ T + Sbjct: 239 HR----ENILIKAKNSFEKIISNKTMGLYTGNKK--------------EIDKEYLFTTIQ 280 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR-L 233 T S + + DEA + + +F P +T+ R Sbjct: 281 TMS----SNYENFLKEEFDYIIIDEAHHITSPSYEKVCDYF---EPKFLLGLTATPNRSD 333 Query: 234 NGWFYDIF 241 G Y++F Sbjct: 334 EGNIYEVF 341 >gi|289619624|emb|CBI53907.1| unnamed protein product [Sordaria macrospora] Length = 2051 Score = 45.3 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 22/154 (14%), Positives = 36/154 (23%), Gaps = 22/154 (14%) Query: 58 FMEAVDVHCHSNVNNSNPTIF--------KCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +E + N +F + + G GKT M W RPG Sbjct: 1170 ALEEIYAQRFQYFNPMQTQVFHTLYHTPANVLLGSPTGSGKTVACELAMWWAFRERPGSK 1229 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ IA + ++ V W + L ++ L Sbjct: 1230 VVYIAPMKALVRER----VKDWGARLAKPLGLKLVEL--------TGDNTPDTRTIQDAD 1277 Query: 170 TITCRTYSEERPDTFVGPHN--THGMAVFNDEAS 201 I + V DE Sbjct: 1278 IIITTPEKWDGISRSWQTRGYVRKVSLVIIDEIH 1311 >gi|209694846|ref|YP_002262774.1| putative helicase (DEAD/DEAH box helicase) [Aliivibrio salmonicida LFI1238] gi|208008797|emb|CAQ78997.1| putative helicase (DEAD/DEAH box helicase) [Aliivibrio salmonicida LFI1238] Length = 434 Score = 45.3 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 27/273 (9%), Positives = 70/273 (25%), Gaps = 40/273 (14%) Query: 87 GIGKTTLNAWMMLWLIST------RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 G GKT A ++ + R + +A + + +S + Sbjct: 48 GTGKTAAFALPVIQRLLDTKKSATRRSARALILAPTRELAEQIAVNIIS----------Y 97 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + SL + ++ Q +D + + + + DEA Sbjct: 98 TKYTSLKVTAVFGGKKMSSQERALDPGVDILVATPGRLQEHIEEGNVSIANLEFLVFDEA 157 Query: 201 S-GTPDIINKSILG-FFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ--IDTR 256 +I + + + ++ + + + + Sbjct: 158 DRMLDMGFVNAIRNIMMEVNSAPQIMLFSATSSAQMNKLASDILRKPKRISVDRENMTAT 217 Query: 257 TVEGIDSGFHEGIISRYGLD--SDVARIEILGQFPQQEVNN---------------FIPH 299 T+ + E + + ++L F + Sbjct: 218 TISHVVYPVDEERKTELLSELIGRKNWQQVL-VFVNYKETANNIVKELKLDGIKAVICHG 276 Query: 300 NYIEEAMSREAID--DLYAPLIMGCDIAGEGGD 330 + + A R + + A +++ D+A G D Sbjct: 277 DKAQSARRRALEEFKEGKARVMVATDVAARGLD 309 >gi|158293118|ref|XP_314465.4| AGAP010491-PA [Anopheles gambiae str. PEST] gi|157016805|gb|EAA09908.4| AGAP010491-PA [Anopheles gambiae str. PEST] Length = 1008 Score = 45.3 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 63/232 (27%), Gaps = 27/232 (11%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + + +++AGRG GK+ + + +++ + Sbjct: 254 QAKAVAQFIDALAEKQLKPP-----TSLTAGRGRGKSA-AMGLAIAGSIAFGYVNVYVTS 307 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 S L L+ + K +L ++ + + + ++ ++ +++ Sbjct: 308 PSPENLIT-LFEFILKGFDVLEYQEHTDYTIIRSTNPNFNKAIIRINITRNNRQTIQYIS 366 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 + + DEA+ P L + M S Sbjct: 367 PTDAHLLNAAD--------LLIIDEAAAIP-------LPMVRAMLGPYLVFMASTING-- 409 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 Y+ L Q+ T + E I G + +L Sbjct: 410 ---YEGTGRSLSLKLLSQLQKETNAPLPIKLEESIRYSPGDPVESWLTSLLC 458 >gi|265986292|ref|ZP_06098849.1| type I restriction modification enzyme [Brucella pinnipedialis M292/94/1] gi|264658489|gb|EEZ28750.1| type I restriction modification enzyme [Brucella pinnipedialis M292/94/1] Length = 798 Score = 45.3 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 81/291 (27%), Gaps = 32/291 (10%) Query: 11 LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70 + L +L A + +NFV+ G + K L + Q AV Sbjct: 53 QDILLAGLLAPANLLDLIRNFVVFETIGGRRIKKLARYQQ--------FVAVGKAIERIR 104 Query: 71 NNSNPTIFKCAISAGRGIGKTTLNAWMM--LWLISTRPGMSIICIANSETQLKNTLWAEV 128 NP I +G GK+ ++ L + +I+ + + Sbjct: 105 TAPNPQRRGGVIHHTQGSGKSLTMVFLATKLRRLPEAENPTIVIVTDRTDLDDQIT---- 160 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR-TYSEERPDTFVGP 187 F+ + + L +++ + +T + P Sbjct: 161 ----------GQFQRSGFANPIQAESGDSLRKALSGGAGTTVLTTVHKFHSAVPKRSSVI 210 Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR--RLNGWFYDIFNIPL 245 + V DEA ++ PN I + T + + + F L Sbjct: 211 SKARNVFVMVDEAH---RTQYGALAARMRAGLPNACMIAFTGTPIDKKDRSTREAFGDYL 267 Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 + + + + E +R +D E+ FP+ + Sbjct: 268 HRY-LIDQAVKDGATVPIYY-EMRDARIRIDGRDFEREVRAAFPELSEDEI 316 >gi|256058984|ref|ZP_05449195.1| type I site-specific deoxyribonuclease, HsdR family protein [Brucella neotomae 5K33] gi|261322928|ref|ZP_05962125.1| type I restriction modification enzyme [Brucella neotomae 5K33] gi|261298908|gb|EEY02405.1| type I restriction modification enzyme [Brucella neotomae 5K33] Length = 989 Score = 45.3 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 81/291 (27%), Gaps = 32/291 (10%) Query: 11 LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70 + L +L A + +NFV+ G + K L + Q AV Sbjct: 244 QDILLAGLLAPANLLDLIRNFVVFETIGGRRIKKLARYQQ--------FVAVGKAIERIR 295 Query: 71 NNSNPTIFKCAISAGRGIGKTTLNAWMM--LWLISTRPGMSIICIANSETQLKNTLWAEV 128 NP I +G GK+ ++ L + +I+ + + Sbjct: 296 TAPNPQRRGGVIHHTQGSGKSLTMVFLATKLRRLPEAENPTIVIVTDRTDLDDQIT---- 351 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR-TYSEERPDTFVGP 187 F+ + + L +++ + +T + P Sbjct: 352 ----------GQFQRSGFANPIQAESGDSLRKALSGGAGTTVLTTVHKFHSAVPKRSSVI 401 Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR--RLNGWFYDIFNIPL 245 + V DEA ++ PN I + T + + + F L Sbjct: 402 SKARNVFVMVDEAH---RTQYGALAARMRAGLPNACMIAFTGTPIDKKDRSTREAFGDYL 458 Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 + + + + E +R +D E+ FP+ + Sbjct: 459 HRY-LIDQAVKDGATVPIYY-EMRDARIRIDGRDFEREVRAAFPELSEDEI 507 >gi|256029295|ref|ZP_05442909.1| type I restriction-modification enzyme, R subunit [Brucella pinnipedialis M292/94/1] Length = 807 Score = 45.3 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 81/291 (27%), Gaps = 32/291 (10%) Query: 11 LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70 + L +L A + +NFV+ G + K L + Q AV Sbjct: 62 QDILLAGLLAPANLLDLIRNFVVFETIGGRRIKKLARYQQ--------FVAVGKAIERIR 113 Query: 71 NNSNPTIFKCAISAGRGIGKTTLNAWMM--LWLISTRPGMSIICIANSETQLKNTLWAEV 128 NP I +G GK+ ++ L + +I+ + + Sbjct: 114 TAPNPQRRGGVIHHTQGSGKSLTMVFLATKLRRLPEAENPTIVIVTDRTDLDDQIT---- 169 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR-TYSEERPDTFVGP 187 F+ + + L +++ + +T + P Sbjct: 170 ----------GQFQRSGFANPIQAESGDSLRKALSGGAGTTVLTTVHKFHSAVPKRSSVI 219 Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR--RLNGWFYDIFNIPL 245 + V DEA ++ PN I + T + + + F L Sbjct: 220 SKARNVFVMVDEAH---RTQYGALAARMRAGLPNACMIAFTGTPIDKKDRSTREAFGDYL 276 Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 + + + + E +R +D E+ FP+ + Sbjct: 277 HRY-LIDQAVKDGATVPIYY-EMRDARIRIDGRDFEREVRAAFPELSEDEI 325 >gi|239625761|ref|ZP_04668792.1| type III restriction protein [Clostridiales bacterium 1_7_47_FAA] gi|239519991|gb|EEQ59857.1| type III restriction protein [Clostridiales bacterium 1_7_47FAA] Length = 829 Score = 45.3 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 57/196 (29%), Gaps = 40/196 (20%) Query: 43 KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102 E +P Q+E + A+ K + A GIGKT L A+ L Sbjct: 213 TEGEGGFEPRGAQIEALYALKCSRREGAE-------KGLVYAATGIGKTYLAAFDSL--- 262 Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162 ++ +A+ E LK AE + + +F Q + Sbjct: 263 ---DYEKVLFVAHREEILKQA--AESFRNVRHSDDYGFFTGQDKCI-------------- 303 Query: 163 GIDSKHYTITCRTYSEERPD--TFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELN 219 I S +P + + DE D + + F Sbjct: 304 ----GKAVIFASVSSLGKPAYLNEGYFSRDYFDYIVIDEFHHAVTDQYKRIMEYF----R 355 Query: 220 PNRFWIMTSNTRRLNG 235 P +T+ R++G Sbjct: 356 PKFMLGLTATPDRMDG 371 >gi|148558328|ref|YP_001257781.1| type I restriction-modification enzyme, R subunit [Brucella ovis ATCC 25840] gi|148369613|gb|ABQ62485.1| type I restriction-modification enzyme, R subunit [Brucella ovis ATCC 25840] Length = 967 Score = 45.3 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 81/291 (27%), Gaps = 32/291 (10%) Query: 11 LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70 + L +L A + +NFV+ G + K L + Q AV Sbjct: 222 QDILLAGLLAPANLLDLIRNFVVFETIGGRRIKKLARYQQ--------FVAVGKAIERIR 273 Query: 71 NNSNPTIFKCAISAGRGIGKTTLNAWMM--LWLISTRPGMSIICIANSETQLKNTLWAEV 128 NP I +G GK+ ++ L + +I+ + + Sbjct: 274 TAPNPQRRGGVIHHTQGSGKSLTMVFLATKLRRLPEAENPTIVIVTDRTDLDDQIT---- 329 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR-TYSEERPDTFVGP 187 F+ + + L +++ + +T + P Sbjct: 330 ----------GQFQRSGFANPIQAESGDSLRKALSGGAGTTVLTTVHKFHSAVPKRSSVI 379 Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR--RLNGWFYDIFNIPL 245 + V DEA ++ PN I + T + + + F L Sbjct: 380 SKARNVFVMVDEAH---RTQYGALAARMRAGLPNACMIAFTGTPIDKKDRSTREAFGDYL 436 Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 + + + + E +R +D E+ FP+ + Sbjct: 437 HRY-LIDQAVKDGATVPIYY-EMRDARIRIDGRDFEREVRAAFPELSEDEI 485 >gi|78127862|gb|ABB22246.1| DNA packaging protein-like protein [Ovine herpesvirus 2] Length = 687 Score = 45.3 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 22/180 (12%), Positives = 54/180 (30%), Gaps = 18/180 (10%) Query: 45 LEHFSQPHRWQL--EFMEAVDVHCHSNVNNSNPTIFKCAI-SAGRGIGKTTLNAWMMLWL 101 L P + + + + + + K ++ R GKT + ++ L Sbjct: 178 LVSIKAPELCERFFKIFKLYFDVDNMDSHTLEVFKQKASVFLIPRRHGKTWIVVAIISIL 237 Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161 +++ + I +A+ + ++ + P R+ ++ +++ Sbjct: 238 LASVQDLRIGYVAHQKHVANAVFTEVINTLHAFFPGRY---------------IDVKKEN 282 Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221 I T +F DEA+ +ILGF + + Sbjct: 283 GTIIFGPPNKKPSTLMCATCFNKNSIRGQTFQFLFVDEANFIKKDALPTILGFMLQKDAK 342 >gi|83642865|ref|YP_438152.1| ORF29 [Ovine herpesvirus 2] gi|61970979|gb|AAX58064.1| ORF29 [Ovine herpesvirus 2] Length = 687 Score = 45.3 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 22/180 (12%), Positives = 54/180 (30%), Gaps = 18/180 (10%) Query: 45 LEHFSQPHRWQL--EFMEAVDVHCHSNVNNSNPTIFKCAI-SAGRGIGKTTLNAWMMLWL 101 L P + + + + + + K ++ R GKT + ++ L Sbjct: 178 LVSIKAPELCERFFKIFKLYFDVDNMDSHTLEVFKQKASVFLIPRRHGKTWIVVAIISIL 237 Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161 +++ + I +A+ + ++ + P R+ ++ +++ Sbjct: 238 LASVQDLRIGYVAHQKHVANAVFTEVINTLHAFFPGRY---------------IDVKKEN 282 Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221 I T +F DEA+ +ILGF + + Sbjct: 283 GTIIFGPPNKKPSTLMCATCFNKNSIRGQTFQFLFVDEANFIKKDALPTILGFMLQKDAK 342 >gi|23500572|ref|NP_700012.1| type I restriction-modification enzyme, R subunit [Brucella suis 1330] gi|23464209|gb|AAN34017.1| type I restriction-modification enzyme, R subunit [Brucella suis 1330] Length = 967 Score = 45.3 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 81/291 (27%), Gaps = 32/291 (10%) Query: 11 LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70 + L +L A + +NFV+ G + K L + Q AV Sbjct: 222 QDILLAGLLAPANLLDLIRNFVVFETIGGRRIKKLARYQQ--------FVAVGKAIERIR 273 Query: 71 NNSNPTIFKCAISAGRGIGKTTLNAWMM--LWLISTRPGMSIICIANSETQLKNTLWAEV 128 NP I +G GK+ ++ L + +I+ + + Sbjct: 274 TAPNPQRRGGVIHHTQGSGKSLTMVFLATKLRRLPEAENPTIVIVTDRTDLDDQIT---- 329 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR-TYSEERPDTFVGP 187 F+ + + L +++ + +T + P Sbjct: 330 ----------GQFQRSGFANPIQAESGDSLRKALSGGAGTTVLTTVHKFHSAVPKRSSVI 379 Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR--RLNGWFYDIFNIPL 245 + V DEA ++ PN I + T + + + F L Sbjct: 380 SKARNVFVMVDEAH---RTQYGALAARMRAGLPNACMIAFTGTPIDKKDRSTREAFGDYL 436 Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 + + + + E +R +D E+ FP+ + Sbjct: 437 HRY-LIDQAVKDGATVPIYY-EMRDARIRIDGRDFEREVRAAFPELSEDEI 485 >gi|83269307|ref|YP_418598.1| DEAD/DEAH box helicase [Brucella melitensis biovar Abortus 2308] gi|82939581|emb|CAJ12561.1| DEAD/DEAH box helicase:Helicase, C-terminal:Type I site-specific deoxyribonuclease HsdR [Brucella melitensis biovar Abortus 2308] Length = 967 Score = 45.3 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 81/291 (27%), Gaps = 32/291 (10%) Query: 11 LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70 + L +L A + +NFV+ G + K L + Q AV Sbjct: 222 QDILLAGLLAPANLLDLIRNFVVFETIGGRRIKKLARYQQ--------FVAVGKAIERIR 273 Query: 71 NNSNPTIFKCAISAGRGIGKTTLNAWMM--LWLISTRPGMSIICIANSETQLKNTLWAEV 128 NP I +G GK+ ++ L + +I+ + + Sbjct: 274 TAPNPQRRGGVIHHTQGSGKSLTMVFLATKLRRLPEAENPTIVIVTDRTDLDDQIT---- 329 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR-TYSEERPDTFVGP 187 F+ + + L +++ + +T + P Sbjct: 330 ----------GQFQRSGFANPIQAESGDSLRKALSGGAGTTVLTTVHKFHSAVPKRSSVI 379 Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR--RLNGWFYDIFNIPL 245 + V DEA ++ PN I + T + + + F L Sbjct: 380 SKARNVFVMVDEAH---RTQYGALAARMRAGLPNACMIAFTGTPIDKKDRSTREAFGDYL 436 Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 + + + + E +R +D E+ FP+ + Sbjct: 437 HRY-LIDQAVKDGATVPIYY-EMRDARIRIDGRDFEREVRAAFPELSEDEI 485 >gi|118580295|ref|YP_901545.1| helicase domain-containing protein [Pelobacter propionicus DSM 2379] gi|118503005|gb|ABK99487.1| helicase domain protein [Pelobacter propionicus DSM 2379] Length = 1172 Score = 45.3 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 29/213 (13%), Positives = 57/213 (26%), Gaps = 20/213 (9%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT + + L+ ++ IA + V +W L + Sbjct: 132 GAGKTVMAGLYIRELMMRADAQRVLIIAP---------GSLVEQWQDELYEKFGLTFT-- 180 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV-GPHNTHGMAVFNDEASGTPD 205 + + + ++ R R + + + V DEA Sbjct: 181 -IFSRELEQQSRTGNAFYENDTLI--ARLDQLSRSEDLQEKLTSVNWDLVIFDEAHKLSA 237 Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265 + S TR L N ED++ + + + F Sbjct: 238 TWYG--QKVTETKRFKLAKFLGSTTRHLLLMTATPHNGKEEDFQLF-LSLLDSDRFYGKF 294 Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIP 298 +G SD+ R + + + + P Sbjct: 295 RDGAHKV--DTSDLMRRMVKEELLKFDGTKLFP 325 >gi|238502669|ref|XP_002382568.1| DEAD/DEAH box helicase, putative [Aspergillus flavus NRRL3357] gi|220691378|gb|EED47726.1| DEAD/DEAH box helicase, putative [Aspergillus flavus NRRL3357] Length = 1997 Score = 44.9 bits (104), Expect = 0.017, Method: Composition-based stats. Identities = 14/123 (11%), Positives = 32/123 (26%), Gaps = 10/123 (8%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + G GKT M W +PG ++ IA + ++ + + + + Sbjct: 1158 NVLLGSPTGSGKTVAAELAMWWAFREKPGSKVVYIAPMKALVRERVHDWKKRLTGPMGLK 1217 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 E+ + + + + + V D Sbjct: 1218 -LVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRDYV---------RKVSLVIID 1267 Query: 199 EAS 201 E Sbjct: 1268 EIH 1270 >gi|169775993|ref|XP_001822463.1| helicase mug81 [Aspergillus oryzae RIB40] gi|83771198|dbj|BAE61330.1| unnamed protein product [Aspergillus oryzae] Length = 1998 Score = 44.9 bits (104), Expect = 0.017, Method: Composition-based stats. Identities = 14/123 (11%), Positives = 32/123 (26%), Gaps = 10/123 (8%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + G GKT M W +PG ++ IA + ++ + + + + Sbjct: 1158 NVLLGSPTGSGKTVAAELAMWWAFREKPGSKVVYIAPMKALVRERVHDWKKRLTGPMGLK 1217 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 E+ + + + + + V D Sbjct: 1218 -LVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRDYV---------RKVSLVIID 1267 Query: 199 EAS 201 E Sbjct: 1268 EIH 1270 >gi|295092678|emb|CBK78785.1| Predicted ATPase related to phosphate starvation-inducible protein PhoH [Clostridium cf. saccharolyticum K10] Length = 458 Score = 44.9 bits (104), Expect = 0.017, Method: Composition-based stats. Identities = 22/178 (12%), Positives = 43/178 (24%), Gaps = 7/178 (3%) Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GMSIICIANSETQLK 121 + + G KT + L + P I+ + Q Sbjct: 242 FLQEALMQPAEKAPLVIVKGMAGTSKTFYALAVGLEKLLNHPTGEYRRILICRPN-AQFD 300 Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 + + + M +L E + K I R + Sbjct: 301 DDIGFLPGDEKEKISPLLRPIMDNLEQLIDSDEESRYEDERELQGKIDEIFERGLIQAEA 360 Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239 F+ + + DEA G T + I+ + +++ F D Sbjct: 361 LNFIRGRSIVKTYLIIDEAQNMTPRQ---AKGIITRAGKDTKVILLGDPNQIDRPFLD 415 >gi|229490046|ref|ZP_04383899.1| helicase conserved domain protein [Rhodococcus erythropolis SK121] gi|229323147|gb|EEN88915.1| helicase conserved domain protein [Rhodococcus erythropolis SK121] Length = 429 Score = 44.9 bits (104), Expect = 0.017, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 26/202 (12%) Query: 44 PLEHFSQPH------RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97 E P ++Q E + PT + +S G GKT + A Sbjct: 11 EREEAEGPTDFPSLHKYQEEIAGRFVEFLQN------PTPQRAMLSLPTGAGKTRVAAEG 64 Query: 98 MLWLISTRPGMS--IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 ++ I I+ IA + + + + W + P + + W Sbjct: 65 VIRWIHDSDAPIGPILWIAQTGELCEQAVQSWKFVWERVGP-------KQTLVIDRLWST 117 Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI---L 212 G + S D + V DEA I L Sbjct: 118 NSATPVTGRAHLVVATDAKLRSCLDTDDYEWLR--DASLVIVDEAHVASSPQYTRILDHL 175 Query: 213 GFFTELNPNRFWIMTSNTRRLN 234 G N +T+ R + Sbjct: 176 GLTRYKNSRPLVGLTATPFRND 197 >gi|291087955|ref|ZP_06572180.1| PhoH family protein [Clostridium sp. M62/1] gi|291073520|gb|EFE10884.1| PhoH family protein [Clostridium sp. M62/1] Length = 277 Score = 44.9 bits (104), Expect = 0.017, Method: Composition-based stats. Identities = 22/178 (12%), Positives = 43/178 (24%), Gaps = 7/178 (3%) Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GMSIICIANSETQLK 121 + + G KT + L + P I+ + Q Sbjct: 61 FLQEALMQPAEKAPLVIVKGMAGTSKTFYALAVGLEKLLNHPTGEYRRILICRPN-AQFD 119 Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 + + + M +L E + K I R + Sbjct: 120 DDIGFLPGDEKEKISPLLRPIMDNLEQLIDSDEESRYEDERELQGKIDEIFERGLIQAEA 179 Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239 F+ + + DEA G T + I+ + +++ F D Sbjct: 180 LNFIRGRSIVKTYLIIDEAQNMTPRQ---AKGIITRAGKDTKVILLGDPNQIDRPFLD 234 >gi|148272867|ref|YP_001222428.1| putative helicase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830797|emb|CAN01738.1| putative helicase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 823 Score = 44.9 bits (104), Expect = 0.017, Method: Composition-based stats. Identities = 31/220 (14%), Positives = 50/220 (22%), Gaps = 21/220 (9%) Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 + S ++A G GKT + A ++L RP I A Sbjct: 30 LRFDLDPFQRAAAESLENGRSVLVAAPTGAGKT-IVAEFAVYLAMQRPSAKIFYTAP-MK 87 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 L N +AE+ E + + + ++ +T Sbjct: 88 ALSNQKYAELV-----------AEYGPDEVGLLTGDTNVNSR-----ARIVVMTTEVLRN 131 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF-WIMTSNTRRLNGWF 237 V DE D ++ P I S T F Sbjct: 132 MLYADSDLLR--DLAFVIMDEVHYLADRFRGAVWEEVIIHLPQSVRMISLSATVSNAEEF 189 Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277 D + + R V + S Sbjct: 190 GDWLQAVRGETDVIVSEERPVPLEQHVIVRHRMVDLFDSS 229 >gi|148747835|ref|YP_001285801.1| terminase [Phormidium phage Pf-WMP3] gi|146230068|gb|ABQ12476.1| terminase [Phormidium phage Pf-WMP3] Length = 565 Score = 44.9 bits (104), Expect = 0.017, Method: Composition-based stats. Identities = 20/139 (14%), Positives = 42/139 (30%), Gaps = 23/139 (16%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 M R T ++ L ++ W L F + F Sbjct: 1 MARRTPTHKERVDALFDI-------------------WAFAD--LIGFRGGRKSFGAFHY 39 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW-MMLWLISTRPGMSIICIANSETQ 119 + + + + + A RG K+T+ + +LW I P + ++ N + Sbjct: 40 ELTDFLTQTQQHEDKDNRRRLVLAPRGHLKSTVCSVLYVLWRIYRNPDIRVLVGTN-LKR 98 Query: 120 LKNTLWAEVSKWLSMLPHR 138 L E+ ++ + Sbjct: 99 LSRAFIRELRQYFEDTWLQ 117 >gi|300916344|ref|ZP_07133089.1| hypothetical protein HMPREF9540_00241 [Escherichia coli MS 115-1] gi|300416353|gb|EFJ99663.1| hypothetical protein HMPREF9540_00241 [Escherichia coli MS 115-1] Length = 334 Score = 44.9 bits (104), Expect = 0.017, Method: Composition-based stats. Identities = 30/250 (12%), Positives = 64/250 (25%), Gaps = 25/250 (10%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L+ P+ Q + ++ K IGKTT+ ++ + +T Sbjct: 34 LKFPDGPYTGQP---MKLFEFQKGMIDVIKERKKKIVFETSAQIGKTTILNGILFYKSAT 90 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 PG + + E ++WLS + + + ++ Sbjct: 91 DPGN---------AGVLQSTGKETTQWLSG---KIRPMIDESEEMQRIVTDKNDRNAVNN 138 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK-----SILGFFTELN 219 S+ + ++ + DE + T Sbjct: 139 TSQIQLRAGGFWYFMSLNSPSHLRGKTLPLMLLDEVDAVETDTEEGNPIIIAEQRATTFG 198 Query: 220 PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT----RTVEGIDSGFHEGIISRYG- 274 + ++S G + + + T + + F I Sbjct: 199 EDARVFISSTPTSKYGAIHTQYEASDKRKYHVPCPTCGHKHELTWENIKFDWVKIDGKSL 258 Query: 275 LDSDVARIEI 284 D + ARIE Sbjct: 259 PDPNSARIEC 268 >gi|260867258|ref|YP_003233660.1| putative terminase large subunit [Escherichia coli O111:H- str. 11128] gi|257763614|dbj|BAI35109.1| putative terminase large subunit [Escherichia coli O111:H- str. 11128] Length = 568 Score = 44.9 bits (104), Expect = 0.017, Method: Composition-based stats. Identities = 29/290 (10%), Positives = 64/290 (22%), Gaps = 40/290 (13%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEA 61 PR + E E +M + + + + + L F Q + + Sbjct: 8 PRCDEPSEMTEAEQRLFIMTK--LSNPWWRLNHLYKIQNEKGELVTFRM-RPAQRQLFRS 64 Query: 62 VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121 + K I R +G +T +L P + +A + Sbjct: 65 MHN--------------KNIILKARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQAAS 110 Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 +++ LP + + ++ Sbjct: 111 EIFRTKIAVPFDHLPDWLRASFTIVERRSGASG-----GYILFGHGSSIQVATSFRSGTV 165 Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241 + + P + G ++ S + G FY++ Sbjct: 166 QRLHISEHGKI-------CAKYPAKAKELRTGTLNAVSDECIIFDESTAEGVGGDFYEMS 218 Query: 242 NIPLE-----------DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280 N E D+K + + E + Sbjct: 219 NCAQESTASGLLLTAQDYKFHFYAWWQDPKYSARVPESGLKLSREKMTYF 268 >gi|219852121|ref|YP_002466553.1| AAA ATPase [Methanosphaerula palustris E1-9c] gi|219546380|gb|ACL16830.1| AAA ATPase [Methanosphaerula palustris E1-9c] Length = 1271 Score = 44.9 bits (104), Expect = 0.017, Method: Composition-based stats. Identities = 44/329 (13%), Positives = 79/329 (24%), Gaps = 39/329 (11%) Query: 22 AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFK-- 79 +EC L + + PL A H S+ + I K Sbjct: 754 SECDLDDTDLIRLIEEPLTVATPLAEDPGFVEAARG--YANSHHLTSSQRAAFDQILKNR 811 Query: 80 -CAISAGRGIGKTTLNAWMMLWLIS----TRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 + G GKTT A +L L+ R G+ I+ A + + ++N L S+ + Sbjct: 812 LTLVWGPPGTGKTTFLAAAILSLVQARQEQRRGIRILVTAFTHSAVENLLSKVQSQVHDL 871 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF--VGPHNTHG 192 + ++ + I + ++ + Sbjct: 872 PVGKGVRVVKIDRDETYRRNGPASTTNDAIKAGLFSDDPSLVLGGTVYGIYKASKYLAPF 931 Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFW--------IMTSNTRRLNGWFYDIFNIP 244 + DEAS L F I+ + Sbjct: 932 DLLIVDEASQLRFGELSLALAALRPGGRLVFAGDDQQLPPIIKGEYPEPEDGLPGLHESI 991 Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE--VNNFIPHNYI 302 + R + D + E L +FP + ++P + Sbjct: 992 F-RYLRLRDDH-DQPRYTAELLENWRMNST----------LSRFPAAALYGDGYVPATPV 1039 Query: 303 EEAMSREAIDDL------YAPLIMGCDIA 325 A L D A Sbjct: 1040 LAEQRLSLKPAGRPGSSLDAMLAWILDPA 1068 >gi|291335742|gb|ADD95345.1| DNA packaging protein A [uncultured phage MedDCM-OCT-S05-C243] Length = 371 Score = 44.9 bits (104), Expect = 0.018, Method: Composition-based stats. Identities = 20/169 (11%), Positives = 37/169 (21%), Gaps = 39/169 (23%) Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278 W R + I ED + + S+ Sbjct: 1 YRPFVWTARY-PRNNTPYEGLIAPQLQEDIDNGVTPWTPTDDRFTEDDLVEREASMGRSN 59 Query: 279 VARIE--------------------ILGQFPQQEVNNFI-----------------PHNY 301 I P + +N + P +Y Sbjct: 60 FMLQFMLDTSLSDAEKFPLKMADLVITSVNPTEAPDNVVWCSDPRNVLKDLPTVGLPGDY 119 Query: 302 IEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFR-RGNIIEHIFDWS 349 M+ + Y I D +G G D+T + + N ++ + Sbjct: 120 FYSPMALQGEWTKYQETICSVDPSGRGADETAACYISQKNGFLYVHEMR 168 >gi|237667744|ref|ZP_04527728.1| putative phage terminase, large subunit [Clostridium butyricum E4 str. BoNT E BL5262] gi|237656092|gb|EEP53648.1| putative phage terminase, large subunit [Clostridium butyricum E4 str. BoNT E BL5262] Length = 560 Score = 44.9 bits (104), Expect = 0.018, Method: Composition-based stats. Identities = 39/361 (10%), Positives = 99/361 (27%), Gaps = 25/361 (6%) Query: 4 LISTDQKLEQELHEMLMHAE---CVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 LI ++K +E + E + + + + L++ +Q + Sbjct: 33 LIDYEKKQYEEQFDFYFDEEKLQIINNLLKLFNFATGFVAGEQVLKNLVG---FQCFLIA 89 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA-WMMLWLISTRPGMSIICIANSETQ 119 + + + N A R KT + +L +++ + I ++ Sbjct: 90 NIFGWRYKDNKNKFRYNDITLYIA-RKNAKTAVVGLIFLLLMLTEQDYSEFYSICLTKEL 148 Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 + V + F+ + P + R + Sbjct: 149 AAEIRKSMVQILEASPLIAKHFKWSKTLIGPIECKITKSFFQPRTAESGKNNSIRPSAFV 208 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIIN-----KSILGFFTELNPNRFWIMTSNTRRLN 234 + N++ A+ + + + ++ +I + + T + Sbjct: 209 SDEHANFKDNSNFTAMKSGQKNVINPLVFRTTTAYAIDNSIMTPDIETIRKVFDGTFKNE 268 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS------DVARIEILGQF 288 F ++ E + + I + + + F Sbjct: 269 RQFALLYYADEEHLWDDIGIYQANPLRIEENYNTIREDREKALIQDNLVEEYLTKSMNYF 328 Query: 289 -PQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFR----RGNIIE 343 P+ +++ I+ + E I+ + +G D+A D T + GNII Sbjct: 329 MPENSGESYVTEEQIKACEADEDINWEGREVYVGVDLAET-DDNTAISMVSLDDDGNIIT 387 Query: 344 H 344 Sbjct: 388 K 388 >gi|290559606|gb|EFD92934.1| DEAD/DEAH box helicase domain protein [Candidatus Parvarchaeum acidophilus ARMAN-5] Length = 508 Score = 44.9 bits (104), Expect = 0.018, Method: Composition-based stats. Identities = 18/175 (10%), Positives = 53/175 (30%), Gaps = 16/175 (9%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 F + +D + + G+GKT ++A + + + P ++ +A ++ Sbjct: 4 FTKKIDDREYQKNIFETCKSGNTLVVLPTGLGKTIISAMLADYRLEKYPNSKVLFLAPTK 63 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177 +++ + F + + ++ + ++ I + Sbjct: 64 --------PLINQHMK------TFSNIMDIKIGTASGSVSSKKRSEMYLENQLIFATPQT 109 Query: 178 EERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNP-NRFWIMTSNT 230 E + + DEA + I +T + +T++ Sbjct: 110 IENDIKNEVIDFSSFSLLIVDEAHHTVGNYSYVKIAKDYTTGSAHPLILGLTASP 164 >gi|156543626|ref|XP_001604556.1| PREDICTED: hypothetical protein [Nasonia vitripennis] Length = 990 Score = 44.9 bits (104), Expect = 0.018, Method: Composition-based stats. Identities = 19/171 (11%), Positives = 47/171 (27%), Gaps = 11/171 (6%) Query: 66 CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-SIICIANSETQLKNTL 124 F + A G GKT + + L +I + +I +A + Sbjct: 50 IQHKSIPLGRCGFDLIVRAKSGTGKTAVFGIIALEMIDIKISSVQVIILAPT-------- 101 Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184 E++ + + E++ L + + + + + + Sbjct: 102 -REIAIQIKEVIASLGCEIKGLKVESFIGGVAMDIDRKKLSN-CHIAIGAPGRVKHLIDK 159 Query: 185 VGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 H DEA + + + + P +++S+ Sbjct: 160 GYLKMDHVRLFVLDEADKLMEESFQKDINYIYAKLPPNRQVISSSATYPGD 210 >gi|148982431|ref|ZP_01816753.1| ATP-dependent RNA helicase SrmB [Vibrionales bacterium SWAT-3] gi|145960483|gb|EDK25855.1| ATP-dependent RNA helicase SrmB [Vibrionales bacterium SWAT-3] Length = 421 Score = 44.9 bits (104), Expect = 0.018, Method: Composition-based stats. Identities = 45/318 (14%), Positives = 81/318 (25%), Gaps = 50/318 (15%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 K + +P + Q E + SA G GKT L Sbjct: 16 KAIDEMGYERPTQIQAEAIPQALDG------------RDVLASAPTGTGKTASFVLPALQ 63 Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 + P ++ + + R + +L++ Sbjct: 64 YLQDFPRKKAGPARMLILTPTRELAMQIT----------DQARELAKYTALNIFTITGGV 113 Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 E + + + + + DEA D+ ++ Sbjct: 114 MYQEHADILGTTQDIVVATPGRLMEYIEAERFDCRAIEWLILDEADRMLDMGFGPVVDRL 173 Query: 216 TELNPNRFWIMTSNTR----RLNGWFYDIFNIP---------LEDWKRYQIDTR-TVEGI 261 + R + + + G+ D+ N P E K Q R Sbjct: 174 SAECRWRKQTLLFSATLEGKGVEGFTEDLLNNPAEIDAKSSLRERKKITQWYHRADTAEH 233 Query: 262 DSGFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AID 312 + II++ S V E LG + IP +I E R Sbjct: 234 KLDLLKHIITKEAERSIVFLKTRERLGDLRALLESAQIPCAWIQGEMPQDRRNNAIARFR 293 Query: 313 DLYAPLIMGCDIAGEGGD 330 D +++ D+A G D Sbjct: 294 DGTVNVLLATDVAARGID 311 >gi|260771156|ref|ZP_05880083.1| ATP-dependent RNA helicase SrmB [Vibrio furnissii CIP 102972] gi|260613753|gb|EEX38945.1| ATP-dependent RNA helicase SrmB [Vibrio furnissii CIP 102972] gi|315179238|gb|ADT86152.1| ATP-dependent RNA helicase SrmB [Vibrio furnissii NCTC 11218] Length = 414 Score = 44.9 bits (104), Expect = 0.018, Method: Composition-based stats. Identities = 43/318 (13%), Positives = 81/318 (25%), Gaps = 50/318 (15%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 + F +P + Q E + SA G GKT L Sbjct: 16 EAIEEMGFERPTQVQAEAI------------PHALDGRDVLASAPTGTGKTAAFVIPALQ 63 Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 + P I+ + + E ++ L+ + F + + Sbjct: 64 FLQDFPRKKAGPARILILTPTRELAMQIT--EQARELAKYTKLNIFTITGGVQYQEHADI 121 Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 Q + + + DEA D+ ++ Sbjct: 122 LATTQDI--------VVATPGRLLEYIEAERFDCRAIEWLILDEADRMLDMGFGPVVDRL 173 Query: 216 TELNPNRFWIMTSNTR----RLNGWFYDIFNIP---------LEDWKRYQIDTR-TVEGI 261 + R M + + G+ D+ P E K Q R Sbjct: 174 SAECRWRKQTMLFSATLEGRGVEGFTADLLKEPAEVNAEPPRRERKKISQWYHRADDMNH 233 Query: 262 DSGFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AID 312 + I+++ + V E L + + I ++I E R Sbjct: 234 KLELLKAILTQQSERAIVFFKTRERLAEVRAVLESAQIACSWIQGEMPQDRRNNAISRFR 293 Query: 313 DLYAPLIMGCDIAGEGGD 330 D +++ D+A G D Sbjct: 294 DGSVNILLATDVAARGID 311 >gi|195570614|ref|XP_002103302.1| GD19029 [Drosophila simulans] gi|194199229|gb|EDX12805.1| GD19029 [Drosophila simulans] Length = 2182 Score = 44.9 bits (104), Expect = 0.018, Method: Composition-based stats. Identities = 20/175 (11%), Positives = 42/175 (24%), Gaps = 20/175 (11%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L F+ + Q + + + + A G GKT + + ++ Sbjct: 1330 LYKFTHFNPIQTQIFHCLYHTDN-----------NVLLGAPTGSGKTIVAEIAIFRALNQ 1378 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 P ++ IA + +K + ++ E+ E Sbjct: 1379 NPKCKVVYIAPLKALVKERIADWEQRFQRSSLGLKVVELTGDVTPDIQAIRESQLIVTTP 1438 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219 + E H + DE + I + N Sbjct: 1439 EKWDGISRSWQTREYV---------QHVSLIVIDEIHLLGEDRGPVIEVIVSRTN 1484 >gi|195328689|ref|XP_002031047.1| GM24241 [Drosophila sechellia] gi|194119990|gb|EDW42033.1| GM24241 [Drosophila sechellia] Length = 2181 Score = 44.9 bits (104), Expect = 0.018, Method: Composition-based stats. Identities = 20/175 (11%), Positives = 42/175 (24%), Gaps = 20/175 (11%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L F+ + Q + + + + A G GKT + + ++ Sbjct: 1329 LYKFTHFNPIQTQIFHCLYHTDN-----------NVLLGAPTGSGKTIVAEIAIFRALNQ 1377 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 P ++ IA + +K + ++ E+ E Sbjct: 1378 NPKCKVVYIAPLKALVKERIADWEQRFQRSSLGLKVVELTGDVTPDIQAIRESQLIVTTP 1437 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219 + E H + DE + I + N Sbjct: 1438 EKWDGISRSWQTREYV---------QHVSLIVIDEIHLLGEDRGPVIEVIVSRTN 1483 >gi|15291373|gb|AAK92955.1| GH18520p [Drosophila melanogaster] Length = 774 Score = 44.9 bits (104), Expect = 0.018, Method: Composition-based stats. Identities = 20/175 (11%), Positives = 42/175 (24%), Gaps = 20/175 (11%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L F+ + Q + + + + A G GKT + + ++ Sbjct: 243 LYKFTHFNPIQTQIFHCLYHTDN-----------NVLLGAPTGSGKTIVAEIAIFRALNQ 291 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 P ++ IA + +K + ++ E+ E Sbjct: 292 NPKCKVVYIAPLKALVKERIADWEQRFQRSSLGLKVVELTGDVTPDIQAIRESQLIVTTP 351 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219 + E H + DE + I + N Sbjct: 352 EKWDGISRSWQTREYV---------QHVSLIVIDEIHLLGEDRGPVIEVIVSRTN 397 >gi|24647182|ref|NP_650472.2| CG5205 [Drosophila melanogaster] gi|23171378|gb|AAF55204.2| CG5205 [Drosophila melanogaster] Length = 2183 Score = 44.9 bits (104), Expect = 0.018, Method: Composition-based stats. Identities = 20/175 (11%), Positives = 42/175 (24%), Gaps = 20/175 (11%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L F+ + Q + + + + A G GKT + + ++ Sbjct: 1331 LYKFTHFNPIQTQIFHCLYHTDN-----------NVLLGAPTGSGKTIVAEIAIFRALNQ 1379 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 P ++ IA + +K + ++ E+ E Sbjct: 1380 NPKCKVVYIAPLKALVKERIADWEQRFQRSSLGLKVVELTGDVTPDIQAIRESQLIVTTP 1439 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219 + E H + DE + I + N Sbjct: 1440 EKWDGISRSWQTREYV---------QHVSLIVIDEIHLLGEDRGPVIEVIVSRTN 1485 >gi|296126191|ref|YP_003633443.1| phage terminase, large subunit, PBSX family [Brachyspira murdochii DSM 12563] gi|296018007|gb|ADG71244.1| phage terminase, large subunit, PBSX family [Brachyspira murdochii DSM 12563] Length = 456 Score = 44.9 bits (104), Expect = 0.018, Method: Composition-based stats. Identities = 22/181 (12%), Positives = 50/181 (27%), Gaps = 20/181 (11%) Query: 61 AVDVHCHSNVNNSNPTIFKCAIS-AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119 + + T + I+ GRG GK+ A +++ G I+C + Sbjct: 2 EIKFNILKPFEKWVNTDKRLKIAFGGRGGGKSESIARILIAKSFEIKG-VILCSREIQKS 60 Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 + + + + + L +F ++ + + E Sbjct: 61 IAYSTYPLLVSIIKELKLESFFNIK--------------RNEITNKITNSKFIFLGIREC 106 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239 + + + F +E + + L WI N R + Y Sbjct: 107 SIEEIKSIY--NVRICFIEEGQTLTQRSYEILEPSIRALKSE-IWIAF-NPRFETDFIYK 162 Query: 240 I 240 + Sbjct: 163 M 163 >gi|67524049|ref|XP_660086.1| hypothetical protein AN2482.2 [Aspergillus nidulans FGSC A4] gi|40744644|gb|EAA63800.1| hypothetical protein AN2482.2 [Aspergillus nidulans FGSC A4] gi|259487904|tpe|CBF86944.1| TPA: DEAD/DEAH box helicase, putative (AFU_orthologue; AFUA_4G03070) [Aspergillus nidulans FGSC A4] Length = 2015 Score = 44.9 bits (104), Expect = 0.018, Method: Composition-based stats. Identities = 15/123 (12%), Positives = 33/123 (26%), Gaps = 10/123 (8%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + G GKT M W RPG ++ IA + ++ + + + + + Sbjct: 1150 NVLLGSPTGSGKTVAAELAMWWAFRERPGSKVVYIAPMKALVRERVMDWGRRLTAPMGLK 1209 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 E+ + + + + + V D Sbjct: 1210 -LVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRDYV---------RKVSLVIID 1259 Query: 199 EAS 201 E Sbjct: 1260 EIH 1262 >gi|108762724|ref|YP_635377.1| CRISPR-associated helicase Cas3 [Myxococcus xanthus DK 1622] gi|108466604|gb|ABF91789.1| CRISPR-associated helicase Cas3 [Myxococcus xanthus DK 1622] Length = 746 Score = 44.9 bits (104), Expect = 0.018, Method: Composition-based stats. Identities = 31/236 (13%), Positives = 55/236 (23%), Gaps = 30/236 (12%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P +Q E + + AG G GKT A LW PG + Sbjct: 270 PRPFQEEVARSAAPL--------------TLVRAGCGSGKT---AAAYLWAARQHPGRPL 312 Query: 111 ICIANSETQLKNTL-----WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI- 164 + A+V L F++ L + + + + Sbjct: 313 WLTYPTMGTATEGFRDYLHGADVEARLQHSRAEVDFDIFGLRDGAAPGTSSRDQDRLDAL 372 Query: 165 ---DSKHYTITCRTYSEERPDTFVGPHNTHGM---AVFNDEASGTPDIINKSILGFF-TE 217 + + T T G + G+ V DE D + +L F Sbjct: 373 RSWGADAMSCTADTVLGLVQSQRQGLYAWPGLCAACVVFDEVHAYDDRLFGCLLRFLEAL 432 Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRY 273 + S + +E + + + Sbjct: 433 PGIPALLMTASLPATRLDVLRGMCERVHGRSLAEVEGPEDLETLPRYQRLDVAEPW 488 >gi|296083594|emb|CBI23583.3| unnamed protein product [Vitis vinifera] Length = 1287 Score = 44.9 bits (104), Expect = 0.018, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 50/169 (29%), Gaps = 12/169 (7%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G+GKT + ++L R + + A +S+W L E S+ Sbjct: 634 GLGKTVMTIALILARPGRRSSGGTLIVCP---------MALLSQWKDELETHSKPESISI 684 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 +H G + D T T + + + H V DEA Sbjct: 685 FIHYGGDRTNDPKVISEHDVVLTTYGVLTSAYKNDENSSIFHRVEWYRVVLDEAHTIKSS 744 Query: 207 INKSILGFFTELNPNRFWIMTSNT--RRLNGWFYDIFNIPLEDWKRYQI 253 S F + W +T L + + + +E W + Sbjct: 745 KTLSAQAAFALP-SHCRWCLTGTPLQNNLEDLYSLLCFLHVEPWCNWAW 792 >gi|161620899|ref|YP_001594785.1| HsdR family type I site-specific deoxyribonuclease [Brucella canis ATCC 23365] gi|254703173|ref|ZP_05165001.1| HsdR family type I site-specific deoxyribonuclease [Brucella suis bv. 3 str. 686] gi|260567899|ref|ZP_05838368.1| HsdR protein [Brucella suis bv. 4 str. 40] gi|261753795|ref|ZP_05997504.1| type I restriction modification enzyme [Brucella suis bv. 3 str. 686] gi|161337710|gb|ABX64014.1| type I site-specific deoxyribonuclease, HsdR family [Brucella canis ATCC 23365] gi|260154564|gb|EEW89645.1| HsdR protein [Brucella suis bv. 4 str. 40] gi|261743548|gb|EEY31474.1| type I restriction modification enzyme [Brucella suis bv. 3 str. 686] Length = 989 Score = 44.9 bits (104), Expect = 0.018, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 81/291 (27%), Gaps = 32/291 (10%) Query: 11 LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70 + L +L A + +NFV+ G + K L + Q AV Sbjct: 244 QDILLAGLLAPANLLDLIRNFVVFETIGGRRIKKLARYQQ--------FVAVGKAIERIR 295 Query: 71 NNSNPTIFKCAISAGRGIGKTTLNAWMM--LWLISTRPGMSIICIANSETQLKNTLWAEV 128 NP I +G GK+ ++ L + +I+ + + Sbjct: 296 TAPNPQRRGGVIHHTQGSGKSLTMVFLATKLRRLPEAENPTIVIVTDRTDLDDQIT---- 351 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR-TYSEERPDTFVGP 187 F+ + + L +++ + +T + P Sbjct: 352 ----------GQFQRSGFANPIQAESGDSLRKALSGGAGTTVLTTVHKFHSAVPKRSSVI 401 Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR--RLNGWFYDIFNIPL 245 + V DEA ++ PN I + T + + + F L Sbjct: 402 SKARNVFVMVDEAH---RTQYGALAARMRAGLPNACMIAFTGTPIDKKDRSTREAFGDYL 458 Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 + + + + E +R +D E+ FP+ + Sbjct: 459 HRY-LIDQAVKDGATVPIYY-EMRDARIRIDGRDFEREVRAAFPELSEDEI 507 >gi|322702554|gb|EFY94192.1| DEAD/DEAH box helicase, putative [Metarhizium anisopliae ARSEF 23] Length = 1010 Score = 44.9 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 35/258 (13%), Positives = 68/258 (26%), Gaps = 30/258 (11%) Query: 15 LHEMLMHAECVLSFKNF-VMRFFPWGIKG---KPLEHFS-QPHRWQLEFMEAVDVHCHSN 69 L + E + F + P+ +G P P WQ ++A+D + Sbjct: 378 LPTLGGQLEIPVDPLEFQLSYCGPYLERGFDSSPDARVPFSPDAWQRTVLDAIDANKS-- 435 Query: 70 VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT---LWA 126 + A GKT ++ + M ++ + ++ +A ++ + + A Sbjct: 436 ----------LFVVAPTSAGKTFISFYAMKKVLQSNDDDVLVYVAPTKALVNQIAAEVQA 485 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 SK S W + ++L I S + + Sbjct: 486 RFSKAYSTQGKSVWAVHTRDYRINNPTGCQVLITV----PHILQIMLLAPSNSKTASSWA 541 Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM---TSNTRRLNGWFYDIFNI 243 + DE + I L P + N N W Sbjct: 542 LRVKR---IIFDEVHCIGQSDDGVIWEQLLLLAPCPIIALSATVGNPMEFNDWLRGSEEA 598 Query: 244 PLEDWKRYQIDTRTVEGI 261 D + R + Sbjct: 599 KGHDLEMILHPYRYSDLR 616 >gi|282162799|ref|YP_003355184.1| putative ATP-dependent helicase [Methanocella paludicola SANAE] gi|282155113|dbj|BAI60201.1| putative ATP-dependent helicase [Methanocella paludicola SANAE] Length = 933 Score = 44.9 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 21/159 (13%), Positives = 38/159 (23%), Gaps = 23/159 (14%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 F++P Q + + A+ + A G GKT L + Sbjct: 19 MGFTEPTETQEKAIPAIMSGDD------------VLVIAPTGTGKTETAMLPALHGVLNG 66 Query: 106 PGM---SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162 G ++ I ++ L +++W L +H A + Sbjct: 67 EGGEGFKVLYITPLRALNRDML-KRLTQWSKELGVSIEVRHGDTPMHERRKQALKPPDVL 125 Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + H V DE Sbjct: 126 ITTPETLQAIFMGLRMRN-------HLKTVKYVIVDEVH 157 >gi|254700053|ref|ZP_05161881.1| type I site-specific deoxyribonuclease, HsdR family protein [Brucella suis bv. 5 str. 513] gi|254705681|ref|ZP_05167509.1| type I site-specific deoxyribonuclease, HsdR family protein [Brucella pinnipedialis M163/99/10] gi|254710912|ref|ZP_05172723.1| type I site-specific deoxyribonuclease, HsdR family protein [Brucella pinnipedialis B2/94] gi|254712615|ref|ZP_05174426.1| type I site-specific deoxyribonuclease, HsdR family protein [Brucella ceti M644/93/1] gi|254715686|ref|ZP_05177497.1| type I site-specific deoxyribonuclease, HsdR family protein [Brucella ceti M13/05/1] gi|256157491|ref|ZP_05455409.1| type I site-specific deoxyribonuclease, HsdR family protein [Brucella ceti M490/95/1] gi|256253532|ref|ZP_05459068.1| type I site-specific deoxyribonuclease, HsdR family protein [Brucella ceti B1/94] gi|260167614|ref|ZP_05754425.1| type I site-specific deoxyribonuclease, HsdR family protein [Brucella sp. F5/99] gi|261217435|ref|ZP_05931716.1| type I restriction modification enzyme [Brucella ceti M13/05/1] gi|261220662|ref|ZP_05934943.1| type I restriction modification enzyme [Brucella ceti B1/94] gi|261313101|ref|ZP_05952298.1| type I restriction modification enzyme [Brucella pinnipedialis M163/99/10] gi|261318495|ref|ZP_05957692.1| type I restriction modification enzyme [Brucella pinnipedialis B2/94] gi|261320309|ref|ZP_05959506.1| type I restriction modification enzyme [Brucella ceti M644/93/1] gi|261750536|ref|ZP_05994245.1| type I restriction modification enzyme [Brucella suis bv. 5 str. 513] gi|261757037|ref|ZP_06000746.1| HsdR, type I restriction-modification enzyme, R subunit [Brucella sp. F5/99] gi|265995988|ref|ZP_06108545.1| type I restriction modification enzyme [Brucella ceti M490/95/1] gi|260919246|gb|EEX85899.1| type I restriction modification enzyme [Brucella ceti B1/94] gi|260922524|gb|EEX89092.1| type I restriction modification enzyme [Brucella ceti M13/05/1] gi|261292999|gb|EEX96495.1| type I restriction modification enzyme [Brucella ceti M644/93/1] gi|261297718|gb|EEY01215.1| type I restriction modification enzyme [Brucella pinnipedialis B2/94] gi|261302127|gb|EEY05624.1| type I restriction modification enzyme [Brucella pinnipedialis M163/99/10] gi|261737021|gb|EEY25017.1| HsdR, type I restriction-modification enzyme, R subunit [Brucella sp. F5/99] gi|261740289|gb|EEY28215.1| type I restriction modification enzyme [Brucella suis bv. 5 str. 513] gi|262550285|gb|EEZ06446.1| type I restriction modification enzyme [Brucella ceti M490/95/1] Length = 989 Score = 44.9 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 81/291 (27%), Gaps = 32/291 (10%) Query: 11 LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70 + L +L A + +NFV+ G + K L + Q AV Sbjct: 244 QDILLAGLLAPANLLDLIRNFVVFETIGGRRIKKLARYQQ--------FVAVGKAIERIR 295 Query: 71 NNSNPTIFKCAISAGRGIGKTTLNAWMM--LWLISTRPGMSIICIANSETQLKNTLWAEV 128 NP I +G GK+ ++ L + +I+ + + Sbjct: 296 TAPNPQRRGGVIHHTQGSGKSLTMVFLATKLRRLPEAENPTIVIVTDRTDLDDQIT---- 351 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR-TYSEERPDTFVGP 187 F+ + + L +++ + +T + P Sbjct: 352 ----------GQFQRSGFANPIQAESGDSLRKALSGGAGTTVLTTVHKFHSAVPKRSSVI 401 Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR--RLNGWFYDIFNIPL 245 + V DEA ++ PN I + T + + + F L Sbjct: 402 SKARNVFVMVDEAH---RTQYGALAARMRAGLPNACMIAFTGTPIDKKDRSTREAFGDYL 458 Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 + + + + E +R +D E+ FP+ + Sbjct: 459 HRY-LIDQAVKDGATVPIYY-EMRDARIRIDGRDFEREVRAAFPELSEDEI 507 >gi|254690826|ref|ZP_05154080.1| HsdR, type I restriction-modification enzyme, R subunit [Brucella abortus bv. 6 str. 870] gi|256256008|ref|ZP_05461544.1| HsdR, type I restriction-modification enzyme, R subunit [Brucella abortus bv. 9 str. C68] gi|260756404|ref|ZP_05868752.1| type I restriction modification enzyme [Brucella abortus bv. 6 str. 870] gi|260882228|ref|ZP_05893842.1| type I restriction modification enzyme [Brucella abortus bv. 9 str. C68] gi|297249367|ref|ZP_06933068.1| type I restriction enzyme, R subunit [Brucella abortus bv. 5 str. B3196] gi|260676512|gb|EEX63333.1| type I restriction modification enzyme [Brucella abortus bv. 6 str. 870] gi|260871756|gb|EEX78825.1| type I restriction modification enzyme [Brucella abortus bv. 9 str. C68] gi|297173236|gb|EFH32600.1| type I restriction enzyme, R subunit [Brucella abortus bv. 5 str. B3196] Length = 989 Score = 44.9 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 81/291 (27%), Gaps = 32/291 (10%) Query: 11 LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70 + L +L A + +NFV+ G + K L + Q AV Sbjct: 244 QDILLAGLLAPANLLDLIRNFVVFETIGGRRIKKLARYQQ--------FVAVGKAIERIR 295 Query: 71 NNSNPTIFKCAISAGRGIGKTTLNAWMM--LWLISTRPGMSIICIANSETQLKNTLWAEV 128 NP I +G GK+ ++ L + +I+ + + Sbjct: 296 TAPNPQRRGGVIHHTQGSGKSLTMVFLATKLRRLPEAENPTIVIVTDRTDLDDQIT---- 351 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR-TYSEERPDTFVGP 187 F+ + + L +++ + +T + P Sbjct: 352 ----------GQFQRSGFANPIQAESGDSLRKALSGGAGTTVLTTVHKFHSAVPKRSSVI 401 Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR--RLNGWFYDIFNIPL 245 + V DEA ++ PN I + T + + + F L Sbjct: 402 SKARNVFVMVDEAH---RTQYGALAARMRAGLPNACMIAFTGTPIDKKDRSTREAFGDYL 458 Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 + + + + E +R +D E+ FP+ + Sbjct: 459 HRY-LIDQAVKDGATVPIYY-EMRDARIRIDGRDFEREVRAAFPELSEDEI 507 >gi|238765012|ref|ZP_04625949.1| Terminase, ATPase subunit [Yersinia kristensenii ATCC 33638] gi|238696781|gb|EEP89561.1| Terminase, ATPase subunit [Yersinia kristensenii ATCC 33638] Length = 587 Score = 44.9 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 31/328 (9%), Positives = 78/328 (23%), Gaps = 45/328 (13%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 F+E + + + + R IG T A L T G + I ++ S+ Sbjct: 140 FLETTFEYQKGWYRAGLQHRIRNILKS-RQIGATFYFAREALIDALTT-GRNQIFLSASK 197 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177 Q + + + + L+ ++ ++ + + + + Sbjct: 198 AQAH-VFKNYIIDFARQVEVDLKGDPMVLANGARLFFLGTNIRTAQSYTGNLYLDEYFWI 256 Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 + + + TP + S F++ N + Sbjct: 257 PKFQELRKVASGMSLHKKWRTTYFSTPSSLAHSAYPFWSGE--------LFN-KGRKNKE 307 Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS-----------RYGLDSDVARIEILG 286 I+ + + E ++ + ++ Sbjct: 308 QHIYVDLSHSHLMHGALCGDGQWRQIVTVEDALAGGCNLFDLDQLALEYSPAEYQNLLMC 367 Query: 287 QFPQQEVNNFIPHNYIEEAM------SREAIDDLYAP-----LIMGCDIAGEGGDKTVVV 335 +F + + P ++ M + Y P + +G D + G + Sbjct: 368 EFVD-DKTSVFPFEELQGCMVDSLEEWDDFNPYAYRPFGYRAVWLGYDPSHTGD--SAGC 424 Query: 336 FRRGN--------IIEHIFDWSAKLIQE 355 I W Sbjct: 425 VVLAPPLVPGGKFRILERHQWKGMDFAT 452 >gi|38640355|ref|NP_944278.1| Bcep22gp49 [Burkholderia phage Bcep22] gi|33860422|gb|AAQ54982.1| Bcep22gp49 [Burkholderia phage Bcep22] Length = 530 Score = 44.9 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 35/323 (10%), Positives = 64/323 (19%), Gaps = 80/323 (24%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 I R +G TTL + L IA + ++ + F Sbjct: 74 ILKARQLGFTTLICIIWLDHALFNANSRCGIIAQDRETAE-----------ALFRDKVKF 122 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 +L + H + R + R T H E Sbjct: 123 AYDNLPEALREAMPLANCTKAELLFAHNNSSIRVATSVRGGTIHRLH--------ISEFG 174 Query: 202 GT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP-----------LE 246 PD + + G + + ++ S G FY+I Sbjct: 175 KICAKYPDKAAEVVTGSIPAVPKSGILVIESTAEGREGEFYNITMQAEAIAQAGKPLTAR 234 Query: 247 DWKRYQIDTRTVEGIDSG--------------------------------FHEGIISRYG 274 D++ + + + + Sbjct: 235 DYRFHFFPWWQAPEYRMDSAHVIITEKDRQYFETIEAKHGITIDAEQRAWYVATRDADFS 294 Query: 275 LDSDVARIEI----LGQFPQQEVNNFIPHNYIEEAMSREAIDDL----YAPLIMGCDIAG 326 + + E F + L P DI Sbjct: 295 GNEERMWQEYPSTPDEPFKVSTEGTYYAQQLAAARKQGRIKPSLPVLFNVPCFTFWDIGN 354 Query: 327 EGGDKTVVVFRRGNIIEHIFDWS 349 D T + + +W Sbjct: 355 --SDGTAIWVLQ----RVEHEWR 371 >gi|322779508|gb|EFZ09700.1| hypothetical protein SINV_16605 [Solenopsis invicta] Length = 1232 Score = 44.9 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 21/177 (11%), Positives = 45/177 (25%), Gaps = 25/177 (14%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L +FS + Q + + + + A G GKT + + Sbjct: 911 LYNFSHFNPIQTQIFHCLYHTDN-----------NVLLGAPTGSGKTIAAEIAIFRVFKQ 959 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 P ++ IA + ++ ++ W L R + L + + I Sbjct: 960 YPDRKVVYIAPLKALVRER----INDWKIRLEERLGRRVVEL--------TGDVSPDVKI 1007 Query: 165 DSKHYTITCRTYSEERPDTFVGPHN--THGMAVFNDEASGTPDIINKSILGFFTELN 219 + I + + DE + + + N Sbjct: 1008 IAGANVIVTTPEKWDGISRSWQTRGYVKKVALIVIDEIHLLGEDRGPVLEVIVSRNN 1064 >gi|296169763|ref|ZP_06851378.1| prophage LambdaSa04 protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895557|gb|EFG75256.1| prophage LambdaSa04 protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 520 Score = 44.9 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 38/331 (11%), Positives = 73/331 (22%), Gaps = 56/331 (16%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS---AGRGIGKTTLNAWMMLWL--ISTR 105 P WQ+ ++ A +S + I+ R GKTT A ++L Sbjct: 22 PDIWQVAYLIAPVAGWVHKSPDSGNWVRIITIAYFEEPRKNGKTTTAAGFGIYLTAADGE 81 Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 G ++ A ++ Q ++ + + ++ P L H + Sbjct: 82 FGAQVVAAATTKDQA-GFVFEPIRQLVNKSP--------GLKRHMRALKHRITH------ 126 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225 +Y + + H DE D+ L T I Sbjct: 127 -----AASGSYFQPIANAGDAQHGADIHGAIVDELHLHKDMALIEALETGTGSREQPLII 181 Query: 226 MTSNTR--RLNGWFYDIF----------------------------NIPLEDWKRYQIDT 255 + R + + E W++ Sbjct: 182 YITTADAGRRHTPYDQKRTLIEQLARGVLKRPTTYGVVFAAEKADDPFAEETWRKANPGY 241 Query: 256 RTVEG-IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL 314 + LG +QE ++ A + Sbjct: 242 GISPTKRAMIEAAEKAKDSPAELARFLRLHLGIRTKQETRYLDVEDWDVNAAMIDLTRLK 301 Query: 315 YAPLIMGCDIAGEGGDKTVVVFRRGNIIEHI 345 G D+ V + Sbjct: 302 GRECFGGLDLGATSDLTAAVWVFPDGDAFDV 332 >gi|170782067|ref|YP_001710399.1| putative helicase [Clavibacter michiganensis subsp. sepedonicus] gi|169156635|emb|CAQ01787.1| putative helicase [Clavibacter michiganensis subsp. sepedonicus] Length = 823 Score = 44.9 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 31/220 (14%), Positives = 50/220 (22%), Gaps = 21/220 (9%) Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 + S ++A G GKT + A ++L RP I A Sbjct: 30 LRFDLDPFQRAAAESLENGRSVLVAAPTGAGKT-IVAEFAVYLAMQRPSAKIFYTAP-MK 87 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 L N +AE+ E + + + ++ +T Sbjct: 88 ALSNQKYAELV-----------AEYGPDEVGLLTGDTNVNSR-----ARIVVMTTEVLRN 131 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF-WIMTSNTRRLNGWF 237 V DE D ++ P I S T F Sbjct: 132 MLYADSDLLR--DLAFVIMDEVHYLADRFRGAVWEEVIIHLPQSVRMISLSATVSNAEEF 189 Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277 D + + R V + S Sbjct: 190 GDWLQAVRGETDVIVSEERPVPLEQHVIVRHRMLDLFDSS 229 >gi|163844962|ref|YP_001622617.1| HsdR family type I site-specific deoxyribonuclease [Brucella suis ATCC 23445] gi|163675685|gb|ABY39795.1| type I site-specific deoxyribonuclease, HsdR family [Brucella suis ATCC 23445] Length = 989 Score = 44.9 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 81/291 (27%), Gaps = 32/291 (10%) Query: 11 LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70 + L +L A + +NFV+ G + K L + Q AV Sbjct: 244 QDILLAGLLAPANLLDLIRNFVVFETIGGRRIKKLARYQQ--------FVAVGKAIERIR 295 Query: 71 NNSNPTIFKCAISAGRGIGKTTLNAWMM--LWLISTRPGMSIICIANSETQLKNTLWAEV 128 NP I +G GK+ ++ L + +I+ + + Sbjct: 296 TAPNPQRRGGVIHHTQGSGKSLTMVFLATKLRRLPEAENPTIVIVTDRTDLDDQIT---- 351 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR-TYSEERPDTFVGP 187 F+ + + L +++ + +T + P Sbjct: 352 ----------GQFQRSGFANPIQAESGDSLRKALSGGAGTTVLTTVHKFHSAVPKRSSVI 401 Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR--RLNGWFYDIFNIPL 245 + V DEA ++ PN I + T + + + F L Sbjct: 402 SKARNVFVMVDEAH---RTQYGALAARMRAGLPNACMIAFTGTPIDKKDRSTREAFGDYL 458 Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 + + + + E +R +D E+ FP+ + Sbjct: 459 HRY-LIDQAVKDGATVPIYY-EMRDARIRIDGRDFEREVRAAFPELSEDEI 507 >gi|62317326|ref|YP_223179.1| HsdR restriction-modification enzyme, R subunit [Brucella abortus bv. 1 str. 9-941] gi|189022581|ref|YP_001932322.1| HsdR, type I restriction-modification enzyme, R subunit [Brucella abortus S19] gi|237816881|ref|ZP_04595873.1| type I site-specific deoxyribonuclease, HsdR family [Brucella abortus str. 2308 A] gi|254698607|ref|ZP_05160435.1| HsdR, type I restriction-modification enzyme, R subunit [Brucella abortus bv. 2 str. 86/8/59] gi|254732054|ref|ZP_05190632.1| HsdR, type I restriction-modification enzyme, R subunit [Brucella abortus bv. 4 str. 292] gi|260544563|ref|ZP_05820384.1| HsdR protein [Brucella abortus NCTC 8038] gi|260759836|ref|ZP_05872184.1| type I restriction modification enzyme [Brucella abortus bv. 4 str. 292] gi|260763075|ref|ZP_05875407.1| type I restriction modification enzyme [Brucella abortus bv. 2 str. 86/8/59] gi|62197519|gb|AAX75818.1| HsdR, type I restriction-modification enzyme, R subunit [Brucella abortus bv. 1 str. 9-941] gi|189021155|gb|ACD73876.1| HsdR, type I restriction-modification enzyme, R subunit [Brucella abortus S19] gi|237787694|gb|EEP61910.1| type I site-specific deoxyribonuclease, HsdR family [Brucella abortus str. 2308 A] gi|260097834|gb|EEW81708.1| HsdR protein [Brucella abortus NCTC 8038] gi|260670154|gb|EEX57094.1| type I restriction modification enzyme [Brucella abortus bv. 4 str. 292] gi|260673496|gb|EEX60317.1| type I restriction modification enzyme [Brucella abortus bv. 2 str. 86/8/59] Length = 989 Score = 44.9 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 81/291 (27%), Gaps = 32/291 (10%) Query: 11 LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70 + L +L A + +NFV+ G + K L + Q AV Sbjct: 244 QDILLAGLLAPANLLDLIRNFVVFETIGGRRIKKLARYQQ--------FVAVGKAIERIR 295 Query: 71 NNSNPTIFKCAISAGRGIGKTTLNAWMM--LWLISTRPGMSIICIANSETQLKNTLWAEV 128 NP I +G GK+ ++ L + +I+ + + Sbjct: 296 TAPNPQRRGGVIHHTQGSGKSLTMVFLATKLRRLPEAENPTIVIVTDRTDLDDQIT---- 351 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR-TYSEERPDTFVGP 187 F+ + + L +++ + +T + P Sbjct: 352 ----------GQFQRSGFANPIQAESGDSLRKALSGGAGTTVLTTVHKFHSAVPKRSSVI 401 Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR--RLNGWFYDIFNIPL 245 + V DEA ++ PN I + T + + + F L Sbjct: 402 SKARNVFVMVDEAH---RTQYGALAARMRAGLPNACMIAFTGTPIDKKDRSTREAFGDYL 458 Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 + + + + E +R +D E+ FP+ + Sbjct: 459 HRY-LIDQAVKDGATVPIYY-EMRDARIRIDGRDFEREVRAAFPELSEDEI 507 >gi|52424157|ref|YP_087294.1| hypothetical protein MS0102 [Mannheimia succiniciproducens MBEL55E] gi|52306209|gb|AAU36709.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 511 Score = 44.9 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 26/248 (10%), Positives = 55/248 (22%), Gaps = 34/248 (13%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 + R IG T A L ++ GM + + ++ ++ + Sbjct: 41 VVEKSRRIGLTWGEAADCALLAASNSGMDVWYVGYNKDMALE--------FIRDCANWAK 92 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS-EERPDTFVGPHNTHGMAVFNDE 199 F + + + G V DE Sbjct: 93 FYGLAAGEIEETEEVFKEGDEKESILAFTIRFASGWRITALSSSPSNLRGKQG-LVIIDE 151 Query: 200 ASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257 A+ P + K+ + + + + I Sbjct: 152 AAFHPCLSELLKAAMALLMWGGRVHIISTHDGVDNPFNELIQEIREGKKPYSLHTITFED 211 Query: 258 ------------------VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299 + + + I + YG D+ E+ P+ ++ Sbjct: 212 AMKDGLYERICLRTNRAYSKEGEQQWEAEIRASYGEDAAE---ELDCI-PKNSGGKWLSR 267 Query: 300 NYIEEAMS 307 IE M Sbjct: 268 ALIESQMH 275 >gi|294056537|ref|YP_003550195.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis DSM 45221] gi|293615870|gb|ADE56025.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis DSM 45221] Length = 524 Score = 44.9 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 23/212 (10%), Positives = 59/212 (27%), Gaps = 21/212 (9%) Query: 87 GIGKTTLNAWMMLWLI-STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 G GKT A L + + ++ + + E+ + + +P ++Q+ Sbjct: 51 GSGKTAAFALPALHGLDLSNKATQVLVLCPTRELAVQVC-EEIHRLSTAMP-----KLQA 104 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 L ++ + Q + + + DEA D Sbjct: 105 LPVY---GGTPIDRQIRALKKGVHVVVGTPGRVMDHMKRKTLKTDSIRLCILDEADRMLD 161 Query: 206 IINKSILGFFTE--LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + + + + ++ R F+ + + Q Sbjct: 162 MGFREDMEIILDAIPQERQTLFFSATMNRGVQGLIKAFSHDAKQIEIEQKTLT------- 214 Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVNN 295 E I Y + +++E++ + E Sbjct: 215 --VESIEQVYYEVRNRSKVEVMCRLLDMEPTQ 244 >gi|238788385|ref|ZP_04632179.1| Terminase, ATPase subunit [Yersinia frederiksenii ATCC 33641] gi|238723631|gb|EEQ15277.1| Terminase, ATPase subunit [Yersinia frederiksenii ATCC 33641] Length = 587 Score = 44.9 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 31/328 (9%), Positives = 78/328 (23%), Gaps = 45/328 (13%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 F+E + + + + R IG T A L T G + I ++ S+ Sbjct: 140 FLETTFEYQKGWYRAGLQHRIRNILKS-RQIGATFYFAREALIDALTT-GRNQIFLSASK 197 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177 Q + + + + L+ ++ ++ + + + + Sbjct: 198 AQAH-VFKNYIIDFARQVEVDLKGDPMVLANGARLFFLGTNIRTAQSYTGNLYLDEYFWI 256 Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 + + + TP + S F++ N + Sbjct: 257 PKFQELRKVASGMSLHKKWRTTYFSTPSSLAHSAYPFWSGE--------LFN-KGRKNKE 307 Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS-----------RYGLDSDVARIEILG 286 I+ + + E ++ + ++ Sbjct: 308 QHIYVDLSHSHLMHGALCGDGQWRQIVTVEDALAGGCNLFDLDQLALEYSPAEYQNLLMC 367 Query: 287 QFPQQEVNNFIPHNYIEEAM------SREAIDDLYAP-----LIMGCDIAGEGGDKTVVV 335 +F + + P ++ M + Y P + +G D + G + Sbjct: 368 EFVD-DKTSVFPFEELQGCMVDSLEEWDDFNPYAYRPFGYRAVWLGYDPSHTGD--SAGC 424 Query: 336 FRRGN--------IIEHIFDWSAKLIQE 355 I W Sbjct: 425 VVLAPPLVLGGKFRILERHQWKGMDFAT 452 >gi|333004961|gb|EGK24481.1| phage Terminase family protein [Shigella flexneri VA-6] Length = 472 Score = 44.9 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 49/232 (21%), Gaps = 25/232 (10%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 WQ + T + R K+T A + W + G I Sbjct: 9 EPWQQFAFACILGFKVKATGRRKYTSAFIEV--PRKNAKSTTAAILANWFLIMENGQQDI 66 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A ++ + + + L + +++ K Sbjct: 67 YTAAVSRDQARIVFDDARQMC--------LLSRPLRRRVNIQAHKVIHPKSNSLLKPLAA 118 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 T P DE PD S L P + + Sbjct: 119 KAATIEGTNPS-----------LSIVDEYHLHPDNGVYSALELGMGARPEGLLFAITTSG 167 Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283 D+ +D V + + +D I+ Sbjct: 168 SNVVSACKQHY----DYCCQILDGEEVNDSIFVLIYELDDKNEVDDPAMWIK 215 >gi|315619058|gb|EFU99640.1| phage Terminase family protein [Escherichia coli 3431] Length = 500 Score = 44.9 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 48/232 (20%), Gaps = 25/232 (10%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 WQ + T + R K+T A + W + G I Sbjct: 17 EPWQQFAFACILGFKVKATGRRKYTSAFIEV--PRKNAKSTTAAILANWFLIMENGQQDI 74 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A ++ + + + L + +++ K Sbjct: 75 YTAAVSRDQARIVFDDARQMC--------LLSRPLRRRVNIQAHKVIHPKSNSLLKPLAA 126 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 T P DE PD S L P + + Sbjct: 127 KAATIEGTNPS-----------LSIVDEYHLHPDNGVYSALELGMGARPEGLLFAITTSG 175 Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283 D+ +D V + +D I+ Sbjct: 176 SNVVSACKQHY----DYCCQILDGEEVNDSIFVLIYELDDENEVDDPAMWIK 223 >gi|300856304|ref|YP_003781288.1| putative phage terminaselarge subunit [Clostridium ljungdahlii DSM 13528] gi|300436419|gb|ADK16186.1| putative phage terminase, large subunit [Clostridium ljungdahlii DSM 13528] Length = 410 Score = 44.9 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 29/281 (10%), Positives = 79/281 (28%), Gaps = 43/281 (15%) Query: 96 WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 + L L + + + + ++++ ++ + + ++ + + + + Sbjct: 2 ALKLILKLLQEKRTALVVREVFDTIRDSCYSLLEEIITDMGLDDKIKCVTSPM------- 54 Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 + + I ++P + V+ +E S K +LG Sbjct: 55 -----QVKFPNGSKIIFKGM---DKPSKLKSI--NNVSIVWIEECSEVKYAGFKELLGRL 104 Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIF--------------------NIPLEDWKRYQIDT 255 + + I+++N + W Y F + + + Sbjct: 105 RHPSLSLHMILSTNPVSKDNWTYKHFFRNDKKKIFILDDEELYKKGIVIRNNTYYHHSTA 164 Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI-EEAMSREAIDDL 314 + + E + D D+ RI G+F A+ + + Sbjct: 165 DDNLFLPESYTEQLDELKTYDPDLYRIARKGRFGINGRRVLPQFEVAPHYAVLQSIGNIK 224 Query: 315 YAPLIMGCDIAGEGGDKTVV---VFRRGNIIEHI-FDWSAK 351 +G D G + N I +I +++ Sbjct: 225 NPIKRVGMDF-GFETSYNAIVRMCIDDDNKILYIYWEYYKN 264 >gi|330874284|gb|EGH08433.1| hypothetical protein PSYMP_06646 [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 684 Score = 44.9 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 40/317 (12%), Positives = 77/317 (24%), Gaps = 72/317 (22%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 I R +G T A + A+ E+ + + + WF Sbjct: 177 ILKSRQVGLTYYFAGEAFMDAVLTGDNQVFLSASRAQS-------EIFRSYIIAFAQAWF 229 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 ++ + D K + + T G H V+ DE Sbjct: 230 GLELT----------GNPIVLSKDGKPW--AELRFLSTNSSTAQGHHGH----VYVDEYF 273 Query: 202 GTPDIINKSILGFFTELNPNRFW--IMTSNTRRLNGWFYDIFN----------------- 242 D + + + + ++ W S ++ Y + Sbjct: 274 WIRD--FEKLNTVASAMATHKKWRKTYFSTPSAVSHQAYPFWQGEKFRNSKRKNAKEPWP 331 Query: 243 ----------IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292 P W++ + G F + D D + + +F Sbjct: 332 SDKQISAGALCPDGQWRKVITILDAIAGGCDLFDLEQLQLEYDD-DKFQQLFMCKFIDSS 390 Query: 293 VNNFIPHNYIEEAMSR----------EAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGN-- 340 + F +E S + +P+ +G D + D T VV Sbjct: 391 QSAF-SLADLERCYSDLSLWADFDPDDPRPYGNSPVWIGYDPSRTRDDATCVVIAPPLEN 449 Query: 341 ----IIEHIFDWSAKLI 353 I W + Sbjct: 450 GGKFRILEKHSWRGQSF 466 >gi|254695866|ref|ZP_05157694.1| HsdR, type I restriction-modification enzyme, R subunit [Brucella abortus bv. 3 str. Tulya] gi|261216286|ref|ZP_05930567.1| type I restriction modification enzyme [Brucella abortus bv. 3 str. Tulya] gi|260917893|gb|EEX84754.1| type I restriction modification enzyme [Brucella abortus bv. 3 str. Tulya] Length = 989 Score = 44.9 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 81/291 (27%), Gaps = 32/291 (10%) Query: 11 LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70 + L +L A + +NFV+ G + K L + Q AV Sbjct: 244 QDILLAGLLAPANLLDLIRNFVVFETIGGRRIKKLARYQQ--------FVAVGKAIERIR 295 Query: 71 NNSNPTIFKCAISAGRGIGKTTLNAWMM--LWLISTRPGMSIICIANSETQLKNTLWAEV 128 NP I +G GK+ ++ L + +I+ + + Sbjct: 296 TAPNPQRRGGLIHHTQGSGKSLTMVFLATKLRRLPEAENPTIVIVTDRTDLDDQIT---- 351 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR-TYSEERPDTFVGP 187 F+ + + L +++ + +T + P Sbjct: 352 ----------GQFQRSGFANPIQAESGDSLRKALSGGAGTTVLTTVHKFHSAVPKRSSVI 401 Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR--RLNGWFYDIFNIPL 245 + V DEA ++ PN I + T + + + F L Sbjct: 402 SKARNVFVMVDEAH---RTQYGALAARMRAGLPNACMIAFTGTPIDKKDRSTREAFGDYL 458 Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 + + + + E +R +D E+ FP+ + Sbjct: 459 HRY-LIDQAVKDGATVPIYY-EMRDARIRIDGRDFEREVRAAFPELSEDEI 507 >gi|67623831|ref|XP_668198.1| DEAD/DEAH box helicase [Cryptosporidium hominis TU502] gi|54659384|gb|EAL37963.1| DEAD/DEAH box helicase [Cryptosporidium hominis] Length = 2123 Score = 44.9 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 36/299 (12%), Positives = 80/299 (26%), Gaps = 34/299 (11%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P WQ + ++ +D + + A GKT + + + S+ Sbjct: 1054 PDYWQKQILDIIDSGDSA------------LVCAPTASGKTF-ICYYAMEQVLRFDNESV 1100 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + L + + AE++ + + + L + + Q + + + Sbjct: 1101 VVFIAPTKALADQVHAEIAYRFGSKTYPNHSRISLLCKLSRDYSINIPTQCQILITLPFM 1160 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM---T 227 + S V DE + +L P + + Sbjct: 1161 LELLLMSTAYQQWVS-----KIKFVIFDEVHCINEAEGGVYWERIFQLIPCPYLCLSATI 1215 Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL-- 285 N W I +P R + + EG + S ++ +L Sbjct: 1216 GNPLAFYNWLQRIGKLPSSKVHFVTYSERYADLSTLVYDEGNLYPLNPLSSLSYDRVLYY 1275 Query: 286 ---GQF---PQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338 G F P ++ F+ + + S + + D + R+ Sbjct: 1276 GLPGDFYLPPNDGLDLFLSLKELLKCNS-----EATKEYLAWLDPQFFFSGTPAITKRQ 1329 >gi|320155900|ref|YP_004188279.1| helicase-related protein [Vibrio vulnificus MO6-24/O] gi|319931212|gb|ADV86076.1| helicase-related protein [Vibrio vulnificus MO6-24/O] Length = 968 Score = 44.9 bits (104), Expect = 0.020, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 51/184 (27%), Gaps = 34/184 (18%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P+ QL+ ++ + + + G G+GKT L+A + + Sbjct: 218 PNSAQLDALQRLSETRQKGNV-------RGLVVMGTGMGKTWLSA----FDAKQLEAKRV 266 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + +A+ E L L W +G+Y ++ Sbjct: 267 LFVAHREEILTQALMTFAKLW---------------PQKSAGYYHGKSKERNK-----EM 306 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 + + + H + DE +I + P +T+ Sbjct: 307 LFASVQTLGKAAHLKHFAPDHFDYIVVDEFHHASAKTYLNI---LSYFEPKFLLGLTATP 363 Query: 231 RRLN 234 R + Sbjct: 364 ERTD 367 >gi|209875625|ref|XP_002139255.1| DEAD/DEAH box helicase [Cryptosporidium muris RN66] gi|209554861|gb|EEA04906.1| DEAD/DEAH box helicase, putative [Cryptosporidium muris RN66] Length = 2034 Score = 44.9 bits (104), Expect = 0.020, Method: Composition-based stats. Identities = 43/342 (12%), Positives = 93/342 (27%), Gaps = 36/342 (10%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQ---------- 50 + +++S + L L + + L K + F G E + Sbjct: 901 VEKMVSEMESLYISLLNSGRYDKLALHIKEGLEAAFQLRYMGADFERSTGSIVDSRVLFL 960 Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P WQ ++ +D + + A GKT + + + S+ Sbjct: 961 PDYWQKYILDIIDKGDSA------------LVCAPTASGKTF-ICYYAMEQVLRYDNESV 1007 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + L + + AE+S + + ++ + + Q + + Y Sbjct: 1008 VVFVAPTKALADQVHAEISYRFGSKTYPNHSKISLFCKLSRDYSINIPTQCQILITLPYM 1067 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM---T 227 + S V DE + +L P ++ + Sbjct: 1068 LELLLMSSVYQSWVS-----KIKFVIFDEVHCINESEGGVYWERILQLIPCQYLCLSATI 1122 Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL-----DSDVARI 282 N W I P + R + +H+G + V Sbjct: 1123 GNPYSFYNWLQKIKKTPNSQVHLVTYNERYADLSTLIYHQGDLYPLNPVLALSYERVLNY 1182 Query: 283 EILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI 324 E+ G F + + I E + ++ + + + D Sbjct: 1183 ELPGDFYLTPADCLDLYLAISEIIKKDEQKEPFEQYVYWLDP 1224 >gi|223935635|ref|ZP_03627551.1| protein of unknown function DUF264 [bacterium Ellin514] gi|223895643|gb|EEF62088.1| protein of unknown function DUF264 [bacterium Ellin514] Length = 437 Score = 44.9 bits (104), Expect = 0.020, Method: Composition-based stats. Identities = 32/283 (11%), Positives = 74/283 (26%), Gaps = 49/283 (17%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGM-SIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 + R IG + A+ + ++ + + + Q + +L Sbjct: 24 IVEKSRQIGFSYCTAYSAVRRVAAEEERLDVWVSSRDDAQAR--------LFLEDCKEWA 75 Query: 140 WFEMQSLSLHPS-GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + + ++ + + K S H V D Sbjct: 76 RTMQIAEPDADEVVFDSKTDFSAHVLQFKTGLRIYSLSSNPNALAGKRGH------VILD 129 Query: 199 EASGTPDI--INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED------WKR 250 E + D + + T + +T R ++ +++ W Sbjct: 130 EFALHADQRLLYRIAKPVTTWGG----QLEIISTHRGANSVFNEMIRGIKENGNKMGWSH 185 Query: 251 YQIDTRTV--------------EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 +++ + + LD + E P E + F Sbjct: 186 HKVTLHDAIAEGLVERINAKTGRNESREAYLARVESECLDQEQWLQEYCCV-PADETSAF 244 Query: 297 IPHNYIEEAMSR-----EAIDDLYAPLIMGCDIAGEGGDKTVV 334 I ++ I + + PL +G D+ + D TV+ Sbjct: 245 ITYDMISGCEDDCLKDFNYLAECKNPLYLGVDVGRK-RDLTVM 286 >gi|260855405|ref|YP_003229296.1| putative terminase large subunit [Escherichia coli O26:H11 str. 11368] gi|257754054|dbj|BAI25556.1| putative terminase large subunit [Escherichia coli O26:H11 str. 11368] Length = 492 Score = 44.9 bits (104), Expect = 0.020, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 48/232 (20%), Gaps = 25/232 (10%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 WQ + T + R K+T A + W + G I Sbjct: 9 EPWQQFAFACILGFKVKATGRRKYTSAFIEV--PRKNAKSTTAAILANWFLIMENGQQDI 66 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A ++ + + + L + +++ K Sbjct: 67 YTAAVSRDQARIVFDDARQMC--------LLSRPLRRRVNIQAHKVIHPKSNSLLKPLAA 118 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 T P DE PD S L P + + Sbjct: 119 KAATIEGTNPS-----------LSIVDEYHLHPDNGVYSALELGMGARPEGLLFAITTSG 167 Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283 D+ +D V + +D I+ Sbjct: 168 SNVVSACKQHY----DYCCQILDGEEVNDSIFVLIYELDDENEVDDPAMWIK 215 >gi|153839366|ref|ZP_01992033.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ3810] gi|149747114|gb|EDM58102.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ3810] Length = 407 Score = 44.9 bits (104), Expect = 0.020, Method: Composition-based stats. Identities = 45/318 (14%), Positives = 83/318 (26%), Gaps = 50/318 (15%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 + + +P + Q E + SA G GKT L Sbjct: 16 EAIEEMGYERPTKIQAEAIPQALDG------------RDILASAPTGTGKTAAFVLPALQ 63 Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 + P I+ + + A+ ++ L+ + F + + Sbjct: 64 YLQDFPRRKPGPARILILTPTRELAMQV--ADQARALAKKTKLNIFTITGGVQYQEHADI 121 Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 Q + + + DEA D+ + Sbjct: 122 LATTQDI--------VVATPGRLREYIDAERFDCRAIEWLVLDEADRMLDMGFAPTVDRL 173 Query: 216 TELNPNRFWIMTSNTR----RLNGWFYDIFNIP---------LEDWKRYQIDTR-TVEGI 261 + R + + + G+ D+ N P E K Q R Sbjct: 174 SNECRWRKQTLLFSATLEGKGVEGFTADLLNEPAEIDAKSPLRERKKIAQWYHRADSAEH 233 Query: 262 DSGFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AID 312 + II+ + V E L + Q + IP ++I E R Sbjct: 234 KLALLKHIITEQAERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAIARFR 293 Query: 313 DLYAPLIMGCDIAGEGGD 330 D +++ D+A G D Sbjct: 294 DGTVNVLLATDVAARGID 311 >gi|325679243|ref|ZP_08158831.1| CRISPR-associated endonuclease Cas3-HD [Ruminococcus albus 8] gi|324109069|gb|EGC03297.1| CRISPR-associated endonuclease Cas3-HD [Ruminococcus albus 8] Length = 773 Score = 44.9 bits (104), Expect = 0.020, Method: Composition-based stats. Identities = 32/265 (12%), Positives = 68/265 (25%), Gaps = 16/265 (6%) Query: 40 IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99 K K E + P Q ++ C + N + + G GKT + + Sbjct: 224 EKLKAFEKKTDPISRQR---RSISDRCAAFAENRVG-ACRLIV--PTGGGKTLSSMRFAI 277 Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159 I IA + L+ H+ + + + + L Sbjct: 278 KQCRKFGLERIFYIAPFMSILEQNSDVIKEIAGDDNILEHYSDFAADIEDENEYSEYQLR 337 Query: 160 QSMGIDS---KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP---DIINKSILG 213 + T E+ + H + DE P + + Sbjct: 338 TQHWDEPVITTTMVQFLNTLFSEKSSSVKRMHRLSNAVIIIDEVQSVPLRCTNLFSLAVN 397 Query: 214 FFTEL-NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISR 272 F T++ + + +P + + + + + + + Sbjct: 398 FLTKVCGSTVVLCSATQPPFDKN---ERGLLPDDKFDMTGDYSEDFKVFRRTELKPALEK 454 Query: 273 YGLDSDVARIEILGQFPQQEVNNFI 297 YG D D A +F + + Sbjct: 455 YGHDFDSAADFCEERFEENGDMLLV 479 >gi|256851698|ref|ZP_05557086.1| phage DEAD box family helicase [Lactobacillus jensenii 27-2-CHN] gi|260661584|ref|ZP_05862496.1| phage DEAD box family helicase [Lactobacillus jensenii 115-3-CHN] gi|282934218|ref|ZP_06339495.1| phage DEAD-box family helicase [Lactobacillus jensenii 208-1] gi|297205316|ref|ZP_06922712.1| helicase [Lactobacillus jensenii JV-V16] gi|256615656|gb|EEU20845.1| phage DEAD box family helicase [Lactobacillus jensenii 27-2-CHN] gi|260547641|gb|EEX23619.1| phage DEAD box family helicase [Lactobacillus jensenii 115-3-CHN] gi|281301692|gb|EFA93959.1| phage DEAD-box family helicase [Lactobacillus jensenii 208-1] gi|297149894|gb|EFH30191.1| helicase [Lactobacillus jensenii JV-V16] Length = 936 Score = 44.9 bits (104), Expect = 0.020, Method: Composition-based stats. Identities = 25/184 (13%), Positives = 57/184 (30%), Gaps = 32/184 (17%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P++ Q E ++ + + + + + G GKT L A+ + Sbjct: 202 PNKMQREALDNLFEVINQGQ-------RRALVVSATGTGKTYLAAFAV----KQYKPKRF 250 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + + + K T+ A K + + + +K+ Sbjct: 251 LYLVHRTQIAKKTM-ASFQKVIGGHKKDYGLLSGN---------------HHDYSAKYLF 294 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 T +T S++ + + DEA + + IL + P +T+ Sbjct: 295 ATVQTLSQD--ELLKTIDPAEFDFILIDEAHRSAAPSYQKILNYL---EPQFCLGLTATP 349 Query: 231 RRLN 234 R++ Sbjct: 350 ERMD 353 >gi|154250084|ref|YP_001410909.1| type III restriction protein res subunit [Fervidobacterium nodosum Rt17-B1] gi|154154020|gb|ABS61252.1| type III restriction protein res subunit [Fervidobacterium nodosum Rt17-B1] Length = 848 Score = 44.9 bits (104), Expect = 0.020, Method: Composition-based stats. Identities = 36/248 (14%), Positives = 65/248 (26%), Gaps = 56/248 (22%) Query: 8 DQKLEQELHEMLMHAECVLSFKNFVM------RFFPWGIKGKPLEHFSQ----------- 50 D+ +EQ + A+ S + F LE Sbjct: 178 DKFIEQ--YAEKWAAKKSDSEYEGLKNLEKDIYVFESDECETNLEEMEGIEQSKSELSNL 235 Query: 51 ---PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107 P+ Q E + + N + + A G+GKT L A+ + Sbjct: 236 PIIPNEVQQEVLREL------NNTRAEGFTKALVVLA-TGVGKTFLAAFDSMQF------ 282 Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 + IA+ E LK + + P+ D+ Sbjct: 283 NRVFFIAHREEILKQ------------------AKSTFEKVRPTSRMGFFTSSGKDTDAD 324 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227 + T +E + + DE K + + NP +T Sbjct: 325 IVFASVFTIGKEEYLNDDYFPPDYFDYIIIDEFHHAAAESYKKL---LSYFNPKFLLGLT 381 Query: 228 SNTRRLNG 235 + R++G Sbjct: 382 ATPERMDG 389 >gi|109897022|ref|YP_660277.1| hypothetical protein Patl_0695 [Pseudoalteromonas atlantica T6c] gi|109699303|gb|ABG39223.1| protein of unknown function DUF264 [Pseudoalteromonas atlantica T6c] Length = 577 Score = 44.9 bits (104), Expect = 0.020, Method: Composition-based stats. Identities = 45/344 (13%), Positives = 88/344 (25%), Gaps = 74/344 (21%) Query: 60 EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119 V + + + + R IG T AW L G + I ++ S +Q Sbjct: 134 NEVFFDYQKRWHAHKDQRTRFILKS-RQIGATYYFAWEALEDAILT-GKNKIFLSASRSQ 191 Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 + V + R +FE++ + S + RT Sbjct: 192 V------MVFRAYICAFARKYFEVE--------LKGSPIILSNEAQLHFLSTNSRTAQSY 237 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 D ++ DE D I G + + + + S + Sbjct: 238 NGD------------LYVDEVFWMNDFNNIWHVAKGMAS--HKHWTRTLISTPSSKSHEA 283 Query: 238 YDIF---------------------------NIPLEDWKRYQIDTRTVEGIDSGFHEGII 270 Y ++ ++ + R + + Sbjct: 284 YTMWSGDRYNQGRKDEDKQELKVNHATLYGGHLAKDRIWRDFVTVEDAANDGCTLFDIDE 343 Query: 271 SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAP-------LIMG 321 + D + +F + F + ++ A R AP + +G Sbjct: 344 LKDENTPDEFDNLYMCEFVDDSHSVFKLADLLKCATDRQHWKDYRERAPRPFLNRAVWLG 403 Query: 322 CDIAGEGGDKT-VVV---FRRGNIIEHIFD--WSAKLIQETNQE 359 D A D T +V G + + K ++E E Sbjct: 404 YDPARSRDDATLAIVAPPVLPGEKFRVLERIYFKGKDLREQAVE 447 >gi|66357938|ref|XP_626147.1| SPAC694.02. SKI family SFII helicase [Cryptosporidium parvum Iowa II] gi|46227112|gb|EAK88062.1| SPAC694.02. SKI family SFII helicase [Cryptosporidium parvum Iowa II] Length = 2123 Score = 44.9 bits (104), Expect = 0.020, Method: Composition-based stats. Identities = 37/299 (12%), Positives = 83/299 (27%), Gaps = 34/299 (11%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P WQ + ++ +D + + A GKT + + + S+ Sbjct: 1054 PDYWQKQILDIIDSGDSA------------LVCAPTASGKTF-ICYYAMEQVLRFDNESV 1100 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + L + + AE++ + + + L + + Q + + + Sbjct: 1101 VVFIAPTKALADQVHAEIAYRFGSKTYPNHSRISLLCKLSRDYSINIPTQCQILITLPFM 1160 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM---T 227 + S T+ + V DE + +L P + + Sbjct: 1161 LELLLMS----TTYQQWVS-KIKFVIFDEVHCINEAEGGVYWERIFQLIPCPYLCLSATI 1215 Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL-- 285 N W I +P R + + EG + S ++ +L Sbjct: 1216 GNPLAFYNWLQRIGKLPSSKVHFVTYSERYADLSTLVYDEGNLYPLNPLSSLSYDRVLYY 1275 Query: 286 ---GQF---PQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRR 338 G F P ++ F+ + + S + + D + R+ Sbjct: 1276 GLPGDFYLPPNDGLDLFLSLKELLKCNS-----EATKEYLAWLDPQFFFSGTPAITKRQ 1329 >gi|239627489|ref|ZP_04670520.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517635|gb|EEQ57501.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 728 Score = 44.9 bits (104), Expect = 0.020, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 45/171 (26%), Gaps = 9/171 (5%) Query: 54 WQLE-FMEAVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q E ++ V + + + G GKT + L II Sbjct: 210 FQCETALQKTRALLQKQVFDKAGEEAEIYLMNMPTGSGKTLCSLKFALERAIRSGKKRII 269 Query: 112 CIANS---ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 + Q T + K +L H+ F + + + D++ Sbjct: 270 YVIPYNSIIDQAAGTFERILGKDAELLRHQSTFSYDDREDYSEDYGQTAKLAAENWDAQL 329 Query: 169 YTITC----RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 T + + HN + DEA P + L Sbjct: 330 IITTAVQFFESIYANKRGKLRKLHNMADSVLIFDEAHMMPQDYLQPCLKAI 380 >gi|290960848|ref|YP_003492030.1| phage terminase large subunit [Streptomyces scabiei 87.22] gi|260650374|emb|CBG73490.1| phage terminase (large subunit) [Streptomyces scabiei 87.22] Length = 598 Score = 44.9 bits (104), Expect = 0.020, Method: Composition-based stats. Identities = 24/189 (12%), Positives = 50/189 (26%), Gaps = 27/189 (14%) Query: 51 PHRWQLEFMEAVDVHCHS---NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL--ISTR 105 P WQ+ ++ A + + I + R GK+TL+ + ++L Sbjct: 101 PDPWQVAWIIAPVFGWVRFDADADMYVRIITDLYVDVPRKNGKSTLSGGLAIYLTCADGE 160 Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 PG +I A ++ Q ++ + + P L+ + Sbjct: 161 PGAQVIAAATTKQQA-GYVFTPIRQLAERAP--------------------ALKGHVKPY 199 Query: 166 SKHYTITCRTYSEER-PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224 E H + DE D ++ T Sbjct: 200 RGKIIHPKSGSYFEVIASVADAQHGANLHGAVIDELHVHKDPEMVEVIETGTGSRRQPLI 259 Query: 225 IMTSNTRRL 233 ++ + Sbjct: 260 VIITTADSG 268 >gi|300362252|ref|ZP_07058428.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus gasseri JV-V03] gi|300353243|gb|EFJ69115.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus gasseri JV-V03] Length = 464 Score = 44.9 bits (104), Expect = 0.020, Method: Composition-based stats. Identities = 29/229 (12%), Positives = 61/229 (26%), Gaps = 23/229 (10%) Query: 42 GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101 G +FS+P + Q + A+ + + A G GKT +L + Sbjct: 23 GLEKINFSKPTKVQAAVIPALLNN------------KNVVVQAATGSGKTHAYLLPLLNM 70 Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161 I ++ + +L N L+ + R + + G + Sbjct: 71 IDENAPVTQAVVTAPSRELANQLYKVARQ------LRDASGLNISIEYLGGGNDRNRQIE 124 Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG-TPDIINKSILGFFTELNP 220 + I + + + A DEA + ++L+ Sbjct: 125 KAENRAPQLIIATPGRLHDFASKKVINLDNVKAFIIDEADMTLDMGFLGQMDEIISKLDK 184 Query: 221 NRFWIMTSN--TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267 S +L + + P D+ I + + Sbjct: 185 KVVLGAFSATIPVKLENFLRKYMSKP--DFIVIDNPAIIAPTIQNDLID 231 >gi|126668852|ref|ZP_01739797.1| putative ATP-dependent helicase [Marinobacter sp. ELB17] gi|126668909|ref|ZP_01739852.1| putative ATP-dependent helicase [Marinobacter sp. ELB17] gi|126626647|gb|EAZ97301.1| putative ATP-dependent helicase [Marinobacter sp. ELB17] gi|126626685|gb|EAZ97337.1| putative ATP-dependent helicase [Marinobacter sp. ELB17] Length = 868 Score = 44.9 bits (104), Expect = 0.020, Method: Composition-based stats. Identities = 39/270 (14%), Positives = 71/270 (26%), Gaps = 41/270 (15%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L +F +QLE + A V I+ G GK+ + A + Sbjct: 44 LRNFGNLRDYQLEAVLAAAFRIRKTVEP-------ILITLPTGSGKSWVIAAL------- 89 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 A+ ++ + +V K + + + + +G+ A + + Sbjct: 90 ---------ASVVKEMSDARSTKVKKVMVLAHSKELVAQNHQKMGAAGYKATIYSAGLST 140 Query: 165 DSKHY-TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223 + S + AVF DEA P + I +NPN Sbjct: 141 RDASGDVVFGSRQSIINAVGEFAQLDYEFSAVFVDEAHSMPTQTREIIE-ALRSVNPNLR 199 Query: 224 WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA--- 280 I + T G Y D + + ++ I D + Sbjct: 200 VIGLTATPYALGKGYIFAQDTFRDLEPMRDIYAKEPYFAERVYDKCIEELFADEQLCPPI 259 Query: 281 -------------RIEILGQFPQQEVNNFI 297 + G F + N Sbjct: 260 LGTISDHYNTEALERTVGGSFSEASNNAVF 289 >gi|326202755|ref|ZP_08192623.1| Protein of unknown function DUF3427 [Clostridium papyrosolvens DSM 2782] gi|325987339|gb|EGD48167.1| Protein of unknown function DUF3427 [Clostridium papyrosolvens DSM 2782] Length = 1047 Score = 44.9 bits (104), Expect = 0.021, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 62/188 (32%), Gaps = 30/188 (15%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PG 107 P+ +Q E +E ++ V ++ + A G GKT ++A+ S Sbjct: 320 HPYPYQSEILEKLEA--EREVKRH----YRNLVVAATGTGKTVISAFDYKHFFSKNKGKP 373 Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 ++ IA+ E LK ++ + ++L ++ E+ S P + + Sbjct: 374 CRLLFIAHREEILKQSMLC----FRAILKDANFGELYVGSYIPESIDHLFISIQTFNSKE 429 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227 Y T R + + DE + + P +T Sbjct: 430 FYKYTTREF---------------YDYIVVDEFHHVAAPTYQIL---LDYYQPKILLGLT 471 Query: 228 SNTRRLNG 235 + R++G Sbjct: 472 ATPERMDG 479 >gi|294676866|ref|YP_003577481.1| type I restriction-modification system RcaSBIIIP subunit R [Rhodobacter capsulatus SB 1003] gi|294475686|gb|ADE85074.1| type I restriction-modification system RcaSBIIIP, R subunit [Rhodobacter capsulatus SB 1003] Length = 817 Score = 44.9 bits (104), Expect = 0.021, Method: Composition-based stats. Identities = 21/194 (10%), Positives = 53/194 (27%), Gaps = 12/194 (6%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 +P +Q+ + A N + + G GKT ++ Sbjct: 161 GSGKEPRYYQINAVNAAMEAIGRGEN-------RVLLVMATGTGKTYTAFQIIWRYRQAF 213 Query: 106 PGMSIICIANSETQLKNTL---WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162 PG I+ +A+ + T+ + S ++ L + ++ ++ + Sbjct: 214 PGKRILFLADRNVLIDQTMVNDFRPFSGKMAKLSTQSKTIERADGSSVELPLGLDRKRRI 273 Query: 163 GIDSKHYTITCRTYSEERPDT--FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220 + Y + + + F + DE + + + Sbjct: 274 DPSYEIYLGLYQAITGPAEEDKIFREFSQDFFDLIIIDECHRGSAAEDSAWREILDHFSG 333 Query: 221 NRFWIMTSNTRRLN 234 MT+ + Sbjct: 334 AVQIGMTATPKETE 347 >gi|163733653|ref|ZP_02141095.1| ATP-dependent DNA helicase, UvrD/REP family domain [Roseobacter litoralis Och 149] gi|161392764|gb|EDQ17091.1| ATP-dependent DNA helicase, UvrD/REP family domain [Roseobacter litoralis Och 149] Length = 908 Score = 44.9 bits (104), Expect = 0.021, Method: Composition-based stats. Identities = 46/399 (11%), Positives = 100/399 (25%), Gaps = 58/399 (14%) Query: 10 KLEQELHEMLMHAECVLSF-----KNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64 E L M+ + + F+ R+ P G+ ++ + W +E + Sbjct: 76 YAETGLKSMVDATRLSEDYFLLNKEQFMKRWMP--GMGREIKRQTTSRSW-KTIVEDLKN 132 Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI-STRPGMS-IICIANSETQLKN 122 ++ + + AG G GKT + + +L+ R I+ +A + Sbjct: 133 KVQQDIVTDDRDRTNVLVLAGPGSGKTRVLVHRIAYLLRMKREDSRGILVLAYNRHAAAE 192 Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW-----YAELLEQSMGIDSKHYTITCRTYS 177 + SL++ G A+ + I + S Sbjct: 193 IRVRLRALVGDDAAGVTISTCHSLAMRLVGASFSGIDADTTDFDNIITEAVGQLNGNGLS 252 Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG----FFTELNPNRFWIMTSNTRRL 233 + + DE I + + + + Sbjct: 253 RSEAEAQRDSLIEGYRWILVDEYQDIGPEEYALISAVAGRSLEDADLKLSLFAVGDDDQN 312 Query: 234 ----NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 NG D + ED+K + E + D +++ + Sbjct: 313 IYAFNGASIDFIRMFEEDYKARPAFLIENYRSTANIIEAANAVISKAPDRMKVDHEIRIN 372 Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGD------------------- 330 + + + + D+ GGD Sbjct: 373 EARSLGVPGGRLADA------DPVAQGRVQL-LDV--PGGDTHQAIAAVDEMIRLSHLDP 423 Query: 331 -----KTVVVFRRGNIIEHIFDWS--AKLIQETNQEGCP 362 +T ++ R + + ++ L E E P Sbjct: 424 NWNWARTAIISRDWKRLGPVRTYAETKGLNVEMANEDLP 462 >gi|159482689|ref|XP_001699400.1| predicted protein [Chlamydomonas reinhardtii] gi|158272851|gb|EDO98646.1| predicted protein [Chlamydomonas reinhardtii] Length = 231 Score = 44.9 bits (104), Expect = 0.021, Method: Composition-based stats. Identities = 19/201 (9%), Positives = 57/201 (28%), Gaps = 7/201 (3%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK-WLSMLPH 137 + G+GKT + A ++L P ++ A ++ ++ A + K + Sbjct: 32 NTLVCLPTGLGKTLIAAVVILNFYRWFPDGKLVFTAPTKPLVEQQHRACLEKTHIPKGET 91 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 ++ +G A + + + + T + + + + + Sbjct: 92 TVLTAGRAKRGDEAGSAAAESRRELWSSRRVFFCTPQILDNDIANGVCP--RDKLVLIVV 149 Query: 198 DEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255 DE ++ R +++ + ++ R + + Sbjct: 150 DECHRVTGNAAPVAALTELRRTGLAVRVVGLSATPGKNAEAVQEVVRHL--GVSRVEFRS 207 Query: 256 RTVEGIDSGFHEGIISRYGLD 276 + H + G + Sbjct: 208 DEDPDVSPHVHNKQVRLGGWE 228 >gi|302412431|ref|XP_003004048.1| ATP-dependent DNA helicase MER3 [Verticillium albo-atrum VaMs.102] gi|261356624|gb|EEY19052.1| ATP-dependent DNA helicase MER3 [Verticillium albo-atrum VaMs.102] Length = 709 Score = 44.9 bits (104), Expect = 0.021, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 36/154 (23%), Gaps = 22/154 (14%) Query: 58 FMEAVDVHCHSNVNNSNPTIF--------KCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +E + N IF + + G GKT M W RPG Sbjct: 245 ALEEIYAQRFQYFNPMQTQIFHTLYNTPANVLLGSPTGSGKTVAAELAMWWAFKERPGSK 304 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ IA + ++ V W + L ++ L Sbjct: 305 VVYIAPMKALVRER----VKDWGARLAKPLGLKLVEL--------TGDNTPDTRTIKDAD 352 Query: 170 TITCRTYSEERPDTFVGPHN--THGMAVFNDEAS 201 I + V DE Sbjct: 353 VIITTPEKWDGISRSWQTRGYVRQVSLVIIDEIH 386 >gi|281600560|gb|ADA73544.1| putative terminase of prophage CP-933C [Shigella flexneri 2002017] Length = 553 Score = 44.9 bits (104), Expect = 0.022, Method: Composition-based stats. Identities = 33/261 (12%), Positives = 55/261 (21%), Gaps = 27/261 (10%) Query: 23 ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82 E V F F +KG + WQ + T + Sbjct: 43 EVVERFIAFSRV--CPHVKGPMRGRPIELEPWQQFAFACILGFKVKATGRRKYTSAFIEV 100 Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 R K+T A + W + G I A ++ + Sbjct: 101 --PRKNAKSTTAAILANWFLIMENGQQDIYTAAVSRDQARIVFDNARQMC--------LL 150 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 + L + +++ K T P DE Sbjct: 151 SRPLRRRVNIQAHKVIHPKSNSLLKPLAAKAATIEGTNPS-----------LSIVDEYHL 199 Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262 PD S L P + + D+ +D V Sbjct: 200 HPDNGVYSALELGMGARPEGLLFAITTSGSNVVSACKQHY----DYCCQILDGEEVNDSI 255 Query: 263 SGFHEGIISRYGLDSDVARIE 283 + +D I+ Sbjct: 256 FVLIYELDDENEVDDPAMWIK 276 >gi|33770510|ref|NP_892047.1| terminase large subunit [Yersinia phage PY54] gi|33636093|emb|CAD91762.1| terminase large subunit [Yersinia phage PY54] Length = 577 Score = 44.9 bits (104), Expect = 0.022, Method: Composition-based stats. Identities = 35/258 (13%), Positives = 67/258 (25%), Gaps = 37/258 (14%) Query: 12 EQELHEMLMHAECVLSFKNF----------VMRFFPWGIKGKPLEHFSQPHRWQLEFMEA 61 ++ L ++ F ++ P + WQL + Sbjct: 33 QRHLDDLKNSVNDKNYPYRFDRDLAERACCFVQLLPHSSGDLKGQKLKA-EPWQLFIFSS 91 Query: 62 VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG--MSIICIANSETQ 119 + + I GR GK+ A + +++ + C A Q Sbjct: 92 IFGWVTKKGKKR--RFKETYIRVGRKNGKSFFAAGIGMYMFCADGENAAEVYCGATKMAQ 149 Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 K + S+ +LP L + E+ D S Sbjct: 150 AKKV-FTPASQMAKLLPD----------LRSRFNVSVWAEKLTREDG----------SVF 188 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTP-DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 P DE P DI+ ++ + I+T+ + + Y Sbjct: 189 APVVGNPGDGDSPSCAIIDEYHEHPTDILYSTMTTGMGARSQPLTLIITTAGKDIESPCY 248 Query: 239 DIFNIPLEDWKRYQIDTR 256 D N + + + R Sbjct: 249 DKDNEVKQCLDKMLPNER 266 >gi|293392001|ref|ZP_06636335.1| crispr-associated helicase Cas3 domain protein [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952535|gb|EFE02654.1| crispr-associated helicase Cas3 domain protein [Aggregatibacter actinomycetemcomitans D7S-1] Length = 567 Score = 44.9 bits (104), Expect = 0.022, Method: Composition-based stats. Identities = 36/228 (15%), Positives = 60/228 (26%), Gaps = 20/228 (8%) Query: 36 FPWGIKGKPLEHFSQPHRWQL-----EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90 F G + +P + Q Q + H + + P +F + G GK Sbjct: 36 FIDGFRRRPTQSAQQTEAEQRNVALNRLRSEILDHAVAQASEP-PGLFTLTV--PTGGGK 92 Query: 91 TTLNAWMMLWLISTRPGMSIICIANSETQLKNT---LWAEVSKWLSMLPHRHWFEMQSLS 147 T + L +I + + ++ +W H Sbjct: 93 TFTSMAFALEHAKRYGMRRVIYVIPFTSIIEQNAAEFRKAFGEWGEAAVLEHHSTFDDGK 152 Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSE----ERPDTFVGPHNTHGMAVFNDEASGT 203 L +L S D T + E +R HN G + DEA Sbjct: 153 LQNIDTKDKLRRASENWDVPVVVSTAVQFFESLFADRSSRCRKLHNIAGSVIILDEAQML 212 Query: 204 PDI----INKSILGFFTELNPNRFWIMTSNTR-RLNGWFYDIFNIPLE 246 P I ++I + + + FY F E Sbjct: 213 PPALLLPIMQAIKELAQNYRCSVVMCTATQPAVQAENGFYRGFENVRE 260 >gi|240103736|ref|YP_002960045.1| reverse gyrase [Thermococcus gammatolerans EJ3] gi|239911290|gb|ACS34181.1| Reverse gyrase (rgy) [Thermococcus gammatolerans EJ3] Length = 1226 Score = 44.9 bits (104), Expect = 0.022, Method: Composition-based stats. Identities = 29/228 (12%), Positives = 65/228 (28%), Gaps = 17/228 (7%) Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 +I A G+GK+T A+M ++ + G + + + T+ Sbjct: 89 QRTWVKRLLKGRSFSIIAPTGMGKSTFGAFMSVYYAT--KGKKSYIVVPTTPLVIQTI-- 144 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 + + + R +++ H + E E I+ Y I + + Sbjct: 145 ---RKVQAIIERTGLDVKLAYYHGNLRKKEKEEMLAKIEGGDYDILITSAQWLARNFDEK 201 Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246 H +F D N +R ++ T + G ++I + + Sbjct: 202 LKGRHFDFIFVD----------DVDAFLKASKNIDRSLLLLGFTEEIIGKAWEIIRLKKQ 251 Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294 + ++ +E I + R +G Sbjct: 252 MARYLNGNSEDKNDRLKELNEAIEKLQREIEEFKRKNDIGIMIIASAT 299 >gi|85105138|ref|XP_961895.1| activating signal cointegrator 1 complex subunit 3 [Neurospora crassa OR74A] gi|28923479|gb|EAA32659.1| activating signal cointegrator 1 complex subunit 3 [Neurospora crassa OR74A] Length = 2066 Score = 44.9 bits (104), Expect = 0.022, Method: Composition-based stats. Identities = 22/153 (14%), Positives = 36/153 (23%), Gaps = 22/153 (14%) Query: 59 MEAVDVHCHSNVNNSNPTIF--------KCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 +E + N +F + + G GKT M W RPG + Sbjct: 1166 LEEIYAQRFQYFNPMQTQVFHTLYHTPANVLLGSPTGSGKTVACELAMWWAFRERPGSKV 1225 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + IA + ++ V W + L ++ L Sbjct: 1226 VYIAPMKALVRER----VKDWGARLAKPLGLKLVEL--------TGDNTPDTRTIQDADI 1273 Query: 171 ITCRTYSEERPDTFVGPHN--THGMAVFNDEAS 201 I + V DE Sbjct: 1274 IITTPEKWDGISRSWQTRGYVRKVSLVIIDEIH 1306 >gi|300726698|ref|ZP_07060130.1| helicase domain protein [Prevotella bryantii B14] gi|299776007|gb|EFI72585.1| helicase domain protein [Prevotella bryantii B14] Length = 901 Score = 44.9 bits (104), Expect = 0.022, Method: Composition-based stats. Identities = 40/270 (14%), Positives = 76/270 (28%), Gaps = 26/270 (9%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + + + + I+ G G+GKT + +I G I+ A Sbjct: 69 QNGAFDVAEYQMTPTLKAFELPRPRLLIADGVGLGKTIEVGIFLSEMIRRGRGKRILVCA 128 Query: 115 NSE--TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 Q + +W + L L ++Q+ + + + ID+ Sbjct: 129 LKSILAQFQEEIWNRFAIPLVRLDSVGVAKIQNEIPLNKNPFDYYDKTIISIDTLKNNGR 188 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE--LNPNRFWIMTS-N 229 R + E+ H + DE + S+ G + I+TS Sbjct: 189 FRAWLEKT----------HWDIIVIDECHKVANE--DSLRGDLAQFLAQKCDSMILTSAT 236 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 + + LE + T E + + + I QF Sbjct: 237 PHNGSAESFANLMRMLEPISIPRNGEYTKEDVMPYYVRRFKNDISD------ARIRSQF- 289 Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319 + IP + E + +A I Sbjct: 290 --QERKVIPIDVNLTPQEEEILSMQHAKFI 317 >gi|253582257|ref|ZP_04859480.1| PhoH family protein [Fusobacterium varium ATCC 27725] gi|251835796|gb|EES64334.1| PhoH family protein [Fusobacterium varium ATCC 27725] Length = 435 Score = 44.9 bits (104), Expect = 0.022, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 51/194 (26%), Gaps = 19/194 (9%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 + G G GKT L L L+ R + IA + L + Sbjct: 245 VTLVGGAGTGKTLLAIATGLELVVERKKYKKLLIA-----------RPIIPMGKDLGYLP 293 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE---ERPDTFVGPHNTHG--MA 194 E + L + + S D K + + Sbjct: 294 GSEKEKLKPWMQPIFDNIDFLSEAKDDKTGEKVVEGLEAMGILKIEALTYIRGRSIPRGL 353 Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254 + DEA + K+I T N I T + ++++ + D L + Sbjct: 354 IIIDEAQNLTPLEIKTI---VTRAGENTKIIFTGDPQQIDNPYLDSNTNGLTYLADRLKN 410 Query: 255 TRTVEGIDSGFHEG 268 V I E Sbjct: 411 EEIVGHITLKKGER 424 >gi|145603324|ref|XP_369340.2| hypothetical protein MGG_06124 [Magnaporthe oryzae 70-15] gi|145011578|gb|EDJ96234.1| hypothetical protein MGG_06124 [Magnaporthe oryzae 70-15] Length = 1998 Score = 44.9 bits (104), Expect = 0.022, Method: Composition-based stats. Identities = 16/126 (12%), Positives = 28/126 (22%), Gaps = 16/126 (12%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + G GKT M W RPG ++ IA + ++ + + Sbjct: 1171 NVLLGSPTGSGKTVAAELAMWWAFRERPGSKVVYIAPMKALVRERV-------------K 1217 Query: 139 HWFEMQSLSLHPSGWY-AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN--THGMAV 195 W + + I + V Sbjct: 1218 DWGARLAQPMGLKLVELTGDNTPDTRTIKDADVIITTPEKWDGISRSWQTRGYVRQVSLV 1277 Query: 196 FNDEAS 201 DE Sbjct: 1278 IIDEIH 1283 >gi|316979455|gb|EFV62248.1| DNA excision repair protein haywire [Trichinella spiralis] Length = 837 Score = 44.9 bits (104), Expect = 0.022, Method: Composition-based stats. Identities = 17/157 (10%), Positives = 35/157 (22%), Gaps = 16/157 (10%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q + + + + + + G GK+ ++ + Sbjct: 328 RPYQEKSLRKMFGNSRARSG--------VIVLPC-GAGKS-----LVGVTACCTVNKRCL 373 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 C+ NS ++ W K S S + I + Sbjct: 374 CLCNSNVSVQQ--WRNQFKMWSTADDSKIVRFTRESGDHVPSGNRANAPVICISTYSMIA 431 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208 S E + DE P + Sbjct: 432 YQGRRSFEAEQMMQYIRQQEWGLILLDEVHTIPAKMF 468 >gi|152985800|ref|YP_001350388.1| hypothetical protein PSPA7_5052 [Pseudomonas aeruginosa PA7] gi|152986886|ref|YP_001346099.1| hypothetical protein PSPA7_0704 [Pseudomonas aeruginosa PA7] gi|150960958|gb|ABR82983.1| conserved hypothetical protein, putative [Pseudomonas aeruginosa PA7] gi|150962044|gb|ABR84069.1| conserved hypothetical protein, putative [Pseudomonas aeruginosa PA7] Length = 682 Score = 44.9 bits (104), Expect = 0.022, Method: Composition-based stats. Identities = 33/295 (11%), Positives = 61/295 (20%), Gaps = 28/295 (9%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA--NSETQLKNTLWAEVSKWLS-MLPHR 138 I R IG T A I A ++ + A ++W L Sbjct: 174 ILKSRQIGLTYYFAAEAFMDAVLTGDNQIFLSASRAQSEVFRSYIVAFAAQWFDIELSGN 233 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY----SEERPDTFVGPHNTHGMA 194 + + + H I + + + + Sbjct: 234 PIILSKDGKPWAELRFLSTNSNTAQSYHGHVYIDEVFWIPNFQKLQTVASAMASHAKWRL 293 Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254 + S G + + P W++ Sbjct: 294 TYFSTPSAVTHQAYPYWTGEEFRNSKRGKKA---GPWPSEAQIHAGALCPDGQWRKVITI 350 Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM-----SRE 309 + G + F + D + + +F F +E + Sbjct: 351 QDAIAGGCNLFDLERLQLEY-DEERFEQLFMCKFIDSTQAAF-ALADLERCYSDLGLWTD 408 Query: 310 AIDDL-----YAPLIMGCDIAGEGGDKTVVVFRRGN------IIEHIFDWSAKLI 353 D P+ +G D + D T VV I W Sbjct: 409 YDPDSPRPFDNRPVWLGYDPSRTRDDATCVVVAPPLEPGGKFRILEKHSWRGTSF 463 >gi|269986940|gb|EEZ93216.1| type III restriction protein res subunit [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 508 Score = 44.6 bits (103), Expect = 0.022, Method: Composition-based stats. Identities = 19/177 (10%), Positives = 52/177 (29%), Gaps = 20/177 (11%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 F E ++ + + G+GKT ++A + + + P ++ +A ++ Sbjct: 4 FKEEIENREYQTKIFETAKTGNTLVVLPTGLGKTIISAMLANYRLEKYPSSKVLFLAPTK 63 Query: 118 TQLKN--TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 ++ + + ++ Q++ D + I Sbjct: 64 PLANQHYRTFSSLLSLKQGMASGSVSSSSRGKIYEDAQIIFATPQTIENDMEKKVIDFSD 123 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNP-NRFWIMTSNT 230 +S + DEA + I ++E + +T++ Sbjct: 124 FS----------------LLIVDEAHHAIGNYSYVKIAKLYSEQSFHPLLLGLTASP 164 >gi|195501254|ref|XP_002097724.1| GE24317 [Drosophila yakuba] gi|194183825|gb|EDW97436.1| GE24317 [Drosophila yakuba] Length = 2183 Score = 44.6 bits (103), Expect = 0.022, Method: Composition-based stats. Identities = 20/175 (11%), Positives = 42/175 (24%), Gaps = 20/175 (11%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L F+ + Q + + + + A G GKT + + ++ Sbjct: 1331 LYKFTHFNPIQTQIFHCLYHTDN-----------NVLLGAPTGSGKTIVAEIAIFRALNQ 1379 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 P ++ IA + +K + ++ E+ E Sbjct: 1380 NPKCKVVYIAPLKALVKERISDWEQRFQRSSLGLKVVELTGDVTPDIQAIRESQLIVTTP 1439 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219 + E H + DE + I + N Sbjct: 1440 EKWDGISRSWQTREYV---------QHVSLIVIDEIHLLGEDRGPVIEVIVSRTN 1485 >gi|75812587|ref|YP_320206.1| Type III restriction enzyme, res subunit [Anabaena variabilis ATCC 29413] gi|75705343|gb|ABA25017.1| Type III restriction enzyme, res subunit [Anabaena variabilis ATCC 29413] Length = 539 Score = 44.6 bits (103), Expect = 0.022, Method: Composition-based stats. Identities = 22/168 (13%), Positives = 45/168 (26%), Gaps = 8/168 (4%) Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 N + + G GKT ++ + + ++ +A S +L Sbjct: 144 RKVKNYFKQEPRRVLLHMPTGSGKTRTAMNIIADHLRSVEPTIVVWLAYS-EELCEQAAT 202 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 E K L R +SL+ E+ + ++ ++ F+ Sbjct: 203 EFQKAWQCLGDR------QVSLYRFWGEHEIDVDKLEDGIVVAGLSKVYNRTKQSIQFIN 256 Query: 187 PHNTHGMAVFNDEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRL 233 V DEA + + +T+ R Sbjct: 257 RLGKVSSLVIIDEAHQAIAETYKLVLDALVVPYENTALLGLTATPGRT 304 >gi|210621036|ref|ZP_03292421.1| hypothetical protein CLOHIR_00364 [Clostridium hiranonis DSM 13275] gi|210155020|gb|EEA86026.1| hypothetical protein CLOHIR_00364 [Clostridium hiranonis DSM 13275] Length = 561 Score = 44.6 bits (103), Expect = 0.023, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 54/180 (30%), Gaps = 24/180 (13%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ + A+ ++ + I A R GK+TL A + L+L+ G Sbjct: 80 ELWQKALVAAMF-GIVHKIDGTRKYREVILIVA-RKNGKSTLAAAIGLYLMIADGEGGAE 137 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I +A+ + Q K +W E K + P L AE+ + Sbjct: 138 IYAVASKKDQAK-IIWLESKKMVKKSPV--------LLKRIKPLVAEMTSEVNES----- 183 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 I + + H DE D ++ T +T+ Sbjct: 184 -IFKPLGRDSDSLDGLNVHG-----ALLDEIHAWKDKNLYDVIVDGTSSREEPMIFITTT 237 >gi|295394538|ref|ZP_06804760.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC 49030] gi|294972589|gb|EFG48442.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC 49030] Length = 467 Score = 44.6 bits (103), Expect = 0.023, Method: Composition-based stats. Identities = 20/183 (10%), Positives = 39/183 (21%), Gaps = 15/183 (8%) Query: 43 KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102 P P + +D T + G GKTT+ + Sbjct: 245 TPEREPEHPDVTRTAQAARLDAGQTVAAAAVASTDPLVIVEGAAGSGKTTMLRTAITVGA 304 Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162 ++ Q+ + ++ L H H + + + + Sbjct: 305 EHGRPSRVVASTLRAAQVAEEELGVPATSVAALVHAHGWRWNDDGVWTRLAPGDTDPTTG 364 Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222 + + V DEA ++L E Sbjct: 365 STYNGP---------------PENARLDRRVRVIVDEAGMLDQDTTHALLTITQEAGATV 409 Query: 223 FWI 225 I Sbjct: 410 ALI 412 >gi|291546806|emb|CBL19914.1| HD domain./DEAD/DEAH box helicase [Ruminococcus sp. SR1/5] Length = 401 Score = 44.6 bits (103), Expect = 0.023, Method: Composition-based stats. Identities = 21/204 (10%), Positives = 51/204 (25%), Gaps = 18/204 (8%) Query: 33 MRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTT 92 W +K E + E ++A + +F+ + G GKT Sbjct: 202 KYITEW-LKNTETESVNGRRT---EILKACLENGEREKG-----LFRLTV--PTGGGKTV 250 Query: 93 LNAWMMLWLISTRPGMSIICIANSETQLKN--TLWAEVSKWLSMLPHRHWFEMQSLSLHP 150 + L II + + ++ ++ + ++L + + + + Sbjct: 251 ASLAFALRHAVKHHMKRIIYVIPYTSIIEQNAAVFRRILGDENVLENHCNIDYEE-AEEL 309 Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI---- 206 + + + HN + DEA P+ Sbjct: 310 KPMQLASENWDKPVVVTTNVQFFESLFSNKSSKCRKLHNMANSVIIFDEAQMLPNDYLKP 369 Query: 207 INKSILGFFTELNPNRFWIMTSNT 230 +I + + Sbjct: 370 CLTAIEELVINYKVSAVLCTATQP 393 >gi|226288385|gb|EEH43897.1| activating signal cointegrator 1 complex subunit 3 [Paracoccidioides brasiliensis Pb18] Length = 2011 Score = 44.6 bits (103), Expect = 0.023, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 35/125 (28%), Gaps = 14/125 (11%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + G GKT M W RPG ++ IA + ++ V W L Sbjct: 1158 NVLLGSPTGSGKTVAAELAMWWAFRERPGSKVVYIAPMKALVRER----VHDWKRRLTVP 1213 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN--THGMAVF 196 ++ L+ + + + + I + + V Sbjct: 1214 MGLKLVELTGDNTPDTRTIRDADIIITTPEKW--------DGISRSWQTRGYVRQVSLVI 1265 Query: 197 NDEAS 201 DE Sbjct: 1266 IDEIH 1270 >gi|295672069|ref|XP_002796581.1| activating signal cointegrator 1 complex subunit 3 [Paracoccidioides brasiliensis Pb01] gi|226283561|gb|EEH39127.1| activating signal cointegrator 1 complex subunit 3 [Paracoccidioides brasiliensis Pb01] Length = 2012 Score = 44.6 bits (103), Expect = 0.023, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 35/125 (28%), Gaps = 14/125 (11%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + G GKT M W RPG ++ IA + ++ V W L Sbjct: 1158 NVLLGSPTGSGKTVAAELAMWWAFRERPGSKVVYIAPMKALVRER----VHDWKRRLTVP 1213 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN--THGMAVF 196 ++ L+ + + + + I + + V Sbjct: 1214 MGLKLVELTGDNTPDTRTIRDADIIITTPEKW--------DGISRSWQTRGYVRQVSLVI 1265 Query: 197 NDEAS 201 DE Sbjct: 1266 IDEIH 1270 >gi|309806027|ref|ZP_07700053.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus iners LactinV 03V1-b] gi|308167630|gb|EFO69783.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus iners LactinV 03V1-b] Length = 460 Score = 44.6 bits (103), Expect = 0.023, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 56/231 (24%), Gaps = 23/231 (9%) Query: 40 IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99 KG +F +P Q + + + H + A G GKT L Sbjct: 17 KKGLEKINFLKPTPVQQQVLPLLLAHQ------------NVVVQAVTGSGKTHAY----L 60 Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159 I ++C T L +++ K L R E+ + G + Sbjct: 61 IPIINDLDPELLCTQAVITAPSRELASQLYKVARQL--RDAAELNISIEYLGGGNDRTRQ 118 Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG-TPDIINKSILGFFTEL 218 ++ I DEA + T L Sbjct: 119 LEKASNNAPQLIIATPGRLHDFAIKKIIKLDQVSTFIIDEADMTLDMGFLNQMDDIMTRL 178 Query: 219 NPNRFWIMTSN--TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267 N S +L + P ++ + + + + Sbjct: 179 GSNVTIGAFSATIPVKLEQFLNKYMEHP--EFVVIDNPSVISPTVANDLID 227 >gi|294636481|ref|ZP_06714853.1| putative terminase large subunit of bacteriophage [Edwardsiella tarda ATCC 23685] gi|291090261|gb|EFE22822.1| putative terminase large subunit of bacteriophage [Edwardsiella tarda ATCC 23685] Length = 553 Score = 44.6 bits (103), Expect = 0.023, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 50/240 (20%), Gaps = 37/240 (15%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 Q + + K I R +G +T +L + Sbjct: 40 RPAQRQLFREMHE--------------KNLILKARQLGFSTAIDLYLLDQALFSKNVKCG 85 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 +A + AE+ + +P H + H + + + Sbjct: 86 IVAQDKQAA-----AEIFRTKIEVPFDHLPAWLAGCFHAVKRHGGASGGYIEFAHGSNIM 140 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 ++ + + P + G + + S Sbjct: 141 VATSFRSGTVQRLHISEHGKI-------CAKYPAKAKEVRTGTLNAVADGSIVFIESTAE 193 Query: 232 RLNGWFYDIFNIPLE-----------DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280 + G FY + E D+K + + + Sbjct: 194 GVGGDFYTMSQRAQEMAQSGLALSPQDYKFHFYAWWQDPKYTAQLPPEGLRLSRHHQAYF 253 >gi|238581544|ref|XP_002389644.1| hypothetical protein MPER_11197 [Moniliophthora perniciosa FA553] gi|215452133|gb|EEB90574.1| hypothetical protein MPER_11197 [Moniliophthora perniciosa FA553] Length = 633 Score = 44.6 bits (103), Expect = 0.023, Method: Composition-based stats. Identities = 20/145 (13%), Positives = 36/145 (24%), Gaps = 8/145 (5%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE-------VSKWLSMLPHRH 139 G GKT +L L+S P I+ A S + + + + R Sbjct: 480 GTGKTVTAVEAILQLLSANPNARILACAPSNSAADLIAMRLRSLGESGLFRAYAPSRDRE 539 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + L + + + S P + DE Sbjct: 540 QVPHELLPFTYQNATGHFSVPLLSRMKRFRAVVTTCVSANIIAGIGIPRGHYTHIF-VDE 598 Query: 200 ASGTPDIINKSILGFFTELNPNRFW 224 A + + ++N N Sbjct: 599 AGQATEPEVMIAIKTMADMNTNVVL 623 >gi|83310862|ref|YP_421126.1| Mu-like prophage FluMu protein gp28 [Magnetospirillum magneticum AMB-1] gi|82945703|dbj|BAE50567.1| Mu-like prophage FluMu protein gp28 [Magnetospirillum magneticum AMB-1] Length = 545 Score = 44.6 bits (103), Expect = 0.023, Method: Composition-based stats. Identities = 33/272 (12%), Positives = 63/272 (23%), Gaps = 49/272 (18%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW----AEVSKWLSMLPHRH 139 GR G T AW ++I A + + E + Sbjct: 51 KGRRTGFTWAEAW----------DDTLIAAAAKSAGGDDIWYIGDTKEKGREFVATCAGF 100 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM------ 193 + L + E +E ++K I + + Sbjct: 101 ASRLAGELLDIEEFVFEDVEVDERGEAKTRQIAAFRITFASGHRISALSSRPANIRGLQG 160 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK---R 250 V DEA+ + K I L + S + + + Sbjct: 161 IVVIDEAAF-HQDVGKVIEACLALLIWGGKIRIISTHNGNTNAYNTLIKEIRTGIQEASL 219 Query: 251 YQIDTRT------------------VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292 ++ + ++ I YG ++ R E+ P++ Sbjct: 220 HRATFDDAVAGGLYERMCAVKNRAMSPQDKAAWYSKIRRSYGSRTEAMREELDAV-PREG 278 Query: 293 VNNFIPHNYIEEAMS------REAIDDLYAPL 318 + IE A R + L Sbjct: 279 DGTMLALALIEAAQHQDYRVARWVPPEPAGSL 310 >gi|332519121|ref|ZP_08395588.1| type III restriction protein res subunit [Lacinutrix algicola 5H-3-7-4] gi|332044969|gb|EGI81162.1| type III restriction protein res subunit [Lacinutrix algicola 5H-3-7-4] Length = 1044 Score = 44.6 bits (103), Expect = 0.023, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 74/232 (31%), Gaps = 30/232 (12%) Query: 4 LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63 S + + EL + H E + S P+ L P +Q E +E ++ Sbjct: 273 FDSYWKSDDFELFDDSKHKEKLQSALKQSKFSKPY-ENATALFDIK-PFPYQKEVLEKLE 330 Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 V + F+ + A G GKT ++A+ ++ +A+ K Sbjct: 331 ------VERTVHKRFRNLVVAATGTGKTVISAFDYKRFKQNNKSAKLLFLAHR----KEI 380 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 + +S + +L + + E+ + P + + S + Sbjct: 381 IQKSLSTFQGVLRNNNIGELWVDGMTP---------------NNFEFVFASVQSVKNKFK 425 Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 + + DE + I+ +F P +T+ R++G Sbjct: 426 EYNLTPDYYDYIIIDECHHQTANSYREIINYF---KPKVLLGLTATPERMDG 474 >gi|149192208|ref|ZP_01870425.1| ATP-dependent RNA helicase SrmB [Vibrio shilonii AK1] gi|148833966|gb|EDL50986.1| ATP-dependent RNA helicase SrmB [Vibrio shilonii AK1] Length = 407 Score = 44.6 bits (103), Expect = 0.023, Method: Composition-based stats. Identities = 42/318 (13%), Positives = 79/318 (24%), Gaps = 50/318 (15%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 + +S+P Q + + SA G GKT A + Sbjct: 16 EAIEEMGYSRPTEIQAQAIPQALD------------AKDILASAPTGTGKTASFAIPAIQ 63 Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 + P I+ + + + + L + Sbjct: 64 YLLDFPRKKAGPARILVLTPTRELAMQVAEH----------TKALAKHTRLKVATITGGV 113 Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 + + + + DEA D+ + Sbjct: 114 TYDTHADTLAQTQDIVVATPGRLMEYIESERFDCRAIEWLVLDEADRMLDLGFGPTVDRL 173 Query: 216 TELNPNRFWIMTSNTR----RLNGWFYDIFNIP---------LEDWKRYQIDTR-TVEGI 261 + R + + + G+ D+ P E K Q R Sbjct: 174 SAECRWRKQTLLFSATLEGRGVEGFTADLLKAPAEISAEPSTRERKKITQWYHRADNAEH 233 Query: 262 DSGFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AID 312 + I++ + V E LG+ QQ + IP ++I E R Sbjct: 234 KLALLKHILTEQAQRTIVFLKTRERLGELRQQLDSAQIPCSWIQGEMPQDRRNNAISRFR 293 Query: 313 DLYAPLIMGCDIAGEGGD 330 D +++ D+A G D Sbjct: 294 DGSVNILLATDVAARGID 311 >gi|324505126|gb|ADY42208.1| TFIIH basal transcription factor complex helicase XPB subunit [Ascaris suum] Length = 798 Score = 44.6 bits (103), Expect = 0.023, Method: Composition-based stats. Identities = 18/169 (10%), Positives = 44/169 (26%), Gaps = 16/169 (9%) Query: 40 IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99 G L+ + +Q + + + + + + G GKT ++ Sbjct: 315 NLGIDLKPSTTLRPYQEKSLRKMFGNSRARSG--------VIVLPC-GAGKT-----LVG 360 Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159 +T + +A S ++ W K S + + P + Sbjct: 361 VTAATTVNKRCLVLATSNVSVEQ--WRAQFKLWSTIRDDQLTRFTREARDPVPSGPNANK 418 Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208 + I + + + + + DE P + Sbjct: 419 PVVCISTYSMVAYTGKRTYAAEEAMKYIESLEWGLLLLDEVHTIPAKMF 467 >gi|284801430|ref|YP_003413295.1| type III restriction enzyme [Listeria monocytogenes 08-5578] gi|284994572|ref|YP_003416340.1| type III restriction enzyme [Listeria monocytogenes 08-5923] gi|284056992|gb|ADB67933.1| type III restriction enzyme [Listeria monocytogenes 08-5578] gi|284060039|gb|ADB70978.1| type III restriction enzyme [Listeria monocytogenes 08-5923] Length = 925 Score = 44.6 bits (103), Expect = 0.023, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 50/184 (27%), Gaps = 18/184 (9%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q E M + +F A G GKT L A ++L+L + + Sbjct: 49 RDYQDEAMRNYHYTQTQINPSPQHVLFNMA----TGSGKTDLMAGLILYLYQEHKYQNFL 104 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 N+ + L T V++ + E++ ++ + + Sbjct: 105 FTVNTNSVLMKTKDNLVNENNDKYLFQEKIEIEGQRIYIRQVERFPCVRQNNTIYIKLSS 164 Query: 172 TCRTYSEERPDTFVGP----HNTHGMAVFNDEASGTP----------DIINKSILGFFTE 217 + + + H + V DEA + +I Sbjct: 165 VQKLSDDLFVLKENTMGLSDYENHPVVVLADEAHHYSASTKSEKEAENTWESAINKILRA 224 Query: 218 LNPN 221 + Sbjct: 225 RDNE 228 >gi|197261559|ref|YP_002154374.1| terminase large subunit [Bacillus phage IEBH] gi|197092431|gb|ACH42306.1| terminase large subunit [Bacillus phage IEBH] Length = 432 Score = 44.6 bits (103), Expect = 0.024, Method: Composition-based stats. Identities = 30/255 (11%), Positives = 66/255 (25%), Gaps = 27/255 (10%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 GR K+++ + ++ +++C+ L +++ ++ + ML Sbjct: 26 IVAKGGRSSMKSSVISMKLVTDFLEDEQGNVVCLRKVGKYLSTSIYEQIKWAIYMLGVES 85 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 F L G D + + + MA++ +E Sbjct: 86 EFYFGKSPLIIRHKKTNTAFYFYGCDDPLKLKSAKIAKG------------YVMALWFEE 133 Query: 200 AS-GTPDIINKSILGFFTEL---NPNRFWIMTSNTRR-LNGWFYDIFNIPL--EDWKRYQ 252 A+ + F + N R W + + ED+ + Sbjct: 134 AAEFAGVEDIDIVEDTFIRQEIEGKEVKVYFSYNPPRNPYSWINEWLDSKAGDEDYFIHH 193 Query: 253 IDTRT--VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310 + I D D R G+ + +E Sbjct: 194 STYMDDKKGFLSQQMIRKIEKYKIHDLDYWRWMYGGEVIGLGDMVY------NMNHIQEI 247 Query: 311 IDDLYAPLIMGCDIA 325 + + I+ D A Sbjct: 248 DELPHDDDIILIDTA 262 >gi|194745250|ref|XP_001955101.1| GF18603 [Drosophila ananassae] gi|190628138|gb|EDV43662.1| GF18603 [Drosophila ananassae] Length = 1475 Score = 44.6 bits (103), Expect = 0.024, Method: Composition-based stats. Identities = 24/197 (12%), Positives = 49/197 (24%), Gaps = 11/197 (5%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + G+GKT + A +M P I+ +A + + +++ ++P Sbjct: 77 NTLVVLPTGLGKTFIAAVVMYNFYRWYPQGKIVFMAPTRPLVAQ----QINASQKIMPFA 132 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 +Q A+L E + + + V D Sbjct: 133 AADTVQLTGQLARPKRAQLWESKRVFFVTPQVVHS---DMLEAEGGATFPFSSVKLVVVD 189 Query: 199 EASGTPDIIN--KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256 EA + R +++ R + Q+ Sbjct: 190 EAHRAKGRYAYTQVADSMMAHNRNFRMLALSATPGRTMDDVATVCQNL--FISNLQVRWD 247 Query: 257 TVEGIDSGFHEGIISRY 273 T + H I Sbjct: 248 TSIDVQPYIHRRTIRTI 264 >gi|322707444|gb|EFY99022.1| activating signal cointegrator 1 complex subunit 3 [Metarhizium anisopliae ARSEF 23] Length = 1969 Score = 44.6 bits (103), Expect = 0.024, Method: Composition-based stats. Identities = 16/126 (12%), Positives = 28/126 (22%), Gaps = 16/126 (12%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + G GKT M W RP ++ IA + ++ + + Sbjct: 1154 NVLLGSPTGSGKTVAAELAMWWAFRERPKSKVVYIAPMKALVRERV-------------K 1200 Query: 139 HWFEMQSLSLHPSGWY-AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN--THGMAV 195 W + + L I + V Sbjct: 1201 DWGKRLAQPLGLKIVELTGDNTPDTRTIKDADIIITTPEKWDGISRSWQTRGYVRQVSLV 1260 Query: 196 FNDEAS 201 DE Sbjct: 1261 IIDEIH 1266 >gi|322695748|gb|EFY87551.1| activating signal cointegrator 1 complex subunit 3 [Metarhizium acridum CQMa 102] Length = 1950 Score = 44.6 bits (103), Expect = 0.024, Method: Composition-based stats. Identities = 16/126 (12%), Positives = 28/126 (22%), Gaps = 16/126 (12%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + G GKT M W RP ++ IA + ++ + + Sbjct: 1135 NVLLGSPTGSGKTVAAELAMWWAFRERPKSKVVYIAPMKALVRERV-------------K 1181 Query: 139 HWFEMQSLSLHPSGWY-AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN--THGMAV 195 W + + L I + V Sbjct: 1182 DWGKRLAQPLGLKIVELTGDNTPDTRTIKDADIIITTPEKWDGISRSWQTRGYVRQVSLV 1241 Query: 196 FNDEAS 201 DE Sbjct: 1242 IIDEIH 1247 >gi|269104765|ref|ZP_06157461.1| putative bacteriophage terminase large subunit [Photobacterium damselae subsp. damselae CIP 102761] gi|268161405|gb|EEZ39902.1| putative bacteriophage terminase large subunit [Photobacterium damselae subsp. damselae CIP 102761] Length = 554 Score = 44.6 bits (103), Expect = 0.024, Method: Composition-based stats. Identities = 17/173 (9%), Positives = 40/173 (23%), Gaps = 12/173 (6%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 K I R +G ++ +L + IA + ++ LP Sbjct: 52 RKNIILKARQLGFSSAIDIYLLDEALWHKNLKCGIIAQDQGAAGEIFRTKIEIPFDNLPI 111 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 E S + + ++ + Sbjct: 112 WLKAEFPIESRRS-----GANGGYILFKNGSSIQCATSFRSGTVQRLHISEHGKI----- 161 Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250 + P + G ++ + S + G F+ + L+ + Sbjct: 162 --CAKYPQKAKEVKTGTLNTIHQKAICFIESTAEGVGGDFHSMCVRSLDLFNS 212 >gi|228956148|ref|ZP_04118032.1| Terminase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228803525|gb|EEM50260.1| Terminase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 483 Score = 44.6 bits (103), Expect = 0.024, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 53/187 (28%), Gaps = 26/187 (13%) Query: 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL--ISTRPGMSII 111 WQ F+ A H ++ R GK+T+ + + L+L PG I Sbjct: 4 WQKAFLAASFGFVHKIDGTRKYREVLLIVA--RKNGKSTIASGIGLYLQVADGEPGAEIY 61 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 +A Q K +W + + + P L EL K Sbjct: 62 AVATKLDQAK-LVWLDAKRMVKKSPV--------LLKRIKPLVRELNADFNDSTFKPLGS 112 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK--SILGFFTELNPNRFWIMTSN 229 T H DE D + G + P F I T+ Sbjct: 113 DSETLDGLN------VHG-----AMMDEIHAWKDKNLYDVIVDGTSSREQPMIFMITTAG 161 Query: 230 TRRLNGW 236 T R + + Sbjct: 162 TIRESVY 168 >gi|218665442|ref|YP_002427301.1| exodeoxyribonuclease V, alpha subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|218517655|gb|ACK78241.1| exodeoxyribonuclease V, alpha subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 646 Score = 44.6 bits (103), Expect = 0.024, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 39/136 (28%), Gaps = 14/136 (10%) Query: 81 AISAGRGIGKTTLNAWMM-LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 I+ G G GKT A M L + ++ + I+ A + + S ++ Sbjct: 197 IITGGPGTGKTYTAARFMALLMATSSTPLRIVLAAPTGKAAVRIDESLQSAVGTLPQLSQ 256 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 +M + DS+ + E + DE Sbjct: 257 IPDMTAAFARLRPARTLHSLLGARPDSRRFRHDAANPLE-------------LDVLVVDE 303 Query: 200 ASGTPDIINKSILGFF 215 AS + ++L Sbjct: 304 ASMIHQEMMAALLRAL 319 >gi|198284628|ref|YP_002220949.1| exodeoxyribonuclease V subunit alpha [Acidithiobacillus ferrooxidans ATCC 53993] gi|198249149|gb|ACH84742.1| exodeoxyribonuclease V, alpha subunit [Acidithiobacillus ferrooxidans ATCC 53993] Length = 650 Score = 44.6 bits (103), Expect = 0.024, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 39/136 (28%), Gaps = 14/136 (10%) Query: 81 AISAGRGIGKTTLNAWMM-LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 I+ G G GKT A M L + ++ + I+ A + + S ++ Sbjct: 201 IITGGPGTGKTYTAARFMALLMATSSTPLRIVLAAPTGKAAVRIDESLQSAVGTLPQLSQ 260 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 +M + DS+ + E + DE Sbjct: 261 IPDMTAAFARLRPARTLHSLLGARPDSRRFRHDAANPLE-------------LDVLVVDE 307 Query: 200 ASGTPDIINKSILGFF 215 AS + ++L Sbjct: 308 ASMIHQEMMAALLRAL 323 >gi|300786007|ref|YP_003766298.1| ATPase [Amycolatopsis mediterranei U32] gi|299795521|gb|ADJ45896.1| ATPase [Amycolatopsis mediterranei U32] Length = 1131 Score = 44.6 bits (103), Expect = 0.025, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 35/124 (28%), Gaps = 7/124 (5%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM-LPHR 138 A+ G GKT L ++ L+ R G ++ + S ++N L A + R Sbjct: 737 LAVQGPPGAGKTYLAGRLIARLV--RAGRTVAVTSTSHKAVENVLSAAKKSAPELPCAKR 794 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + L + + + ++ + D Sbjct: 795 AKKTPDPAAPWDQPKSNPALVKWREEHDTGHLVGGTAWTFANA----AVREEPFDLLIID 850 Query: 199 EASG 202 EA Sbjct: 851 EAGQ 854 >gi|221633560|ref|YP_002522786.1| hypothetical protein trd_1584 [Thermomicrobium roseum DSM 5159] gi|221155562|gb|ACM04689.1| conserved hypothetical protein [Thermomicrobium roseum DSM 5159] Length = 489 Score = 44.6 bits (103), Expect = 0.025, Method: Composition-based stats. Identities = 29/262 (11%), Positives = 58/262 (22%), Gaps = 33/262 (12%) Query: 86 RGIGKTTLNAWMMLWLI--STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 R GK A + WL+ R G ++ S + + L Sbjct: 62 RQSGKDEALAQFLAWLLLRFHRRGGEVVVALPSWR-------PQGALARERLLAVLAAPR 114 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + L G E+ + + S T + + +EA Sbjct: 115 LAALLAGLGLAPEVAGARVALGRAVVRYASAGPSANVRG------LTASLLLVANEAQDI 168 Query: 204 -PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI------PLEDWKRYQIDTR 256 PD + + + + +++ Sbjct: 169 APDRWDSAFAPMAASTGAPAL--YLGTPWGSDSLLARELRYLTALERQDGQQRVWRVPWT 226 Query: 257 TVEGIDSGF---HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN---YIEEAMSREA 310 TV + +++ G R E + P + Sbjct: 227 TVAAELPAYGDHVRERMAQLGAGHPFVRTEYGLE-ELAGEGRLFPPERLALVRGDHPALL 285 Query: 311 IDDLYAPLIMGCDIAGEGGDKT 332 + D+A G D+ Sbjct: 286 APRPGERYALTVDVA--GEDEA 305 >gi|260771800|ref|ZP_05880718.1| ATP-dependent RNA helicase SrmB [Vibrio metschnikovii CIP 69.14] gi|260613092|gb|EEX38293.1| ATP-dependent RNA helicase SrmB [Vibrio metschnikovii CIP 69.14] Length = 411 Score = 44.6 bits (103), Expect = 0.025, Method: Composition-based stats. Identities = 43/312 (13%), Positives = 80/312 (25%), Gaps = 50/312 (16%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 F +P + Q E + SA G GKT L + P Sbjct: 22 GFERPTQVQEEAI------------PHALDGRDILASAPTGTGKTAAFVIPALQYLQDFP 69 Query: 107 -----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161 ++ + + E ++ L+ + F + + Q Sbjct: 70 RKKPGPARMLILTPTRELAMQIT--EQARQLAKHTRLNIFTITGGVQYQEHADILATTQD 127 Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221 + + + DEA D+ ++ Sbjct: 128 I--------VVATPGRLLEYINAERFDCRAIEWLILDEADRMLDMGFGPVVDRLAAECRW 179 Query: 222 RFWIMTSNTR----RLNGWFYDIFNIP---------LEDWKRYQIDTR-TVEGIDSGFHE 267 R + + + G+ D+ N P E K Q R + Sbjct: 180 RKQTLLFSATLEGRGVEGFTADLLNNPAEITAEPPRRERKKIAQWYHRADSMKHKLELLK 239 Query: 268 GIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AIDDLYAPL 318 I+++ S V E L + + IP +I E R + + Sbjct: 240 VILTQQAERSIVFIKTRERLAELRGELERAQIPCAWIQGEMPQDRRNNAISRFREGDINI 299 Query: 319 IMGCDIAGEGGD 330 ++ D+A G D Sbjct: 300 LLATDVAARGID 311 >gi|260773326|ref|ZP_05882242.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14] gi|260612465|gb|EEX37668.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14] Length = 428 Score = 44.6 bits (103), Expect = 0.025, Method: Composition-based stats. Identities = 27/272 (9%), Positives = 73/272 (26%), Gaps = 38/272 (13%) Query: 87 GIGKTTLNAWMMLWLISTRPGM------SIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 G GKT + ++ + + +A + + + Sbjct: 48 GTGKTAAFSLPVIQRLLDSGKKPSPHTARALILAPTRELAAQIAQNI----------KDY 97 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + SLS+ ++ Q ++S + E + + + DEA Sbjct: 98 VKYTSLSVTAVYGGNKMSSQVRQLESGVDILVATPGRLEEHLSEGNVSLANLEFLVFDEA 157 Query: 201 SGTPDIIN--KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 D+ + + ++ T + +++T Sbjct: 158 DRILDMGFINPVRKIMLEVETSPQIMMFSATTSAQLNQLAGDILRKPKRINADRVNTTAS 217 Query: 259 EGIDSGFHEGIISRYGLDSDV-----ARIEILGQFPQQEVNNFI-------------PHN 300 + + L S++ + ++ ++ N + + Sbjct: 218 TVAHVVYPVDQERKTELLSELIGRKNWQQVLVFVNYKETANQVVKELKLDGIKAVICHGD 277 Query: 301 YIEEAMSR--EAIDDLYAPLIMGCDIAGEGGD 330 + A R + + A +++ D+A G D Sbjct: 278 KGQSARRRALDEFKEGKARVMVATDVAARGLD 309 >gi|254446700|ref|ZP_05060175.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium DG1235] gi|198256125|gb|EDY80434.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium DG1235] Length = 841 Score = 44.6 bits (103), Expect = 0.025, Method: Composition-based stats. Identities = 25/194 (12%), Positives = 48/194 (24%), Gaps = 46/194 (23%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P WQ + + + ++A G GKT L + Sbjct: 40 PDLWQQDALYRIKAGED------------VVVNAPTGAGKTYL----------------V 71 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 IA + + L +P R + GW ++ + ID + Sbjct: 72 ELIAETYKSGQIVL---------AVPTRALANDKLREFRAKGWRVGIVTGDVAIDPEAPV 122 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII---NKSILGFFTELNPNRFWI-- 225 + +++ DE D N + + + Sbjct: 123 VVATLETQK----PRFLLGKGPRLFVVDEYQMIGDETRGVNYELCIALAPPSTQLLLLSG 178 Query: 226 MTSNTRRLNGWFYD 239 SN + + W Sbjct: 179 SVSNPQDIVDWLQR 192 >gi|154504636|ref|ZP_02041374.1| hypothetical protein RUMGNA_02142 [Ruminococcus gnavus ATCC 29149] gi|153795118|gb|EDN77538.1| hypothetical protein RUMGNA_02142 [Ruminococcus gnavus ATCC 29149] Length = 457 Score = 44.6 bits (103), Expect = 0.025, Method: Composition-based stats. Identities = 24/178 (13%), Positives = 48/178 (26%), Gaps = 7/178 (3%) Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GMSIICIANSETQLK 121 + S + G KT + + L + P I+ + Sbjct: 242 FLQEALMQSAEKAPLVIVKGMAGTSKTFYSLAVGLEKLLNNPSGEYRRILICRPNALFDS 301 Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 + + + + P M +L E ++ K I R + Sbjct: 302 DIGFLPGDEQEKISPL-MRPIMDNLEQLVDSSDRERYSNEQELNDKIQEIFDRGIIQTEA 360 Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239 TF+ + + DEA I G T I+ + +++ + D Sbjct: 361 LTFIRGRSIMKTYLIIDEAQNMTPAQ---IKGIITRAGKETKIILLGDPNQIDRPYLD 415 >gi|30062674|ref|NP_836845.1| putative terminase of prophage CP-933C [Shigella flexneri 2a str. 2457T] gi|56479836|ref|NP_707056.2| putative terminase of prophage CP-933C [Shigella flexneri 2a str. 301] gi|30040922|gb|AAP16652.1| putative terminase of prophage CP-933C [Shigella flexneri 2a str. 2457T] gi|56383387|gb|AAN42763.2| putative terminase of prophage CP-933C [Shigella flexneri 2a str. 301] gi|313650396|gb|EFS14803.1| phage Terminase family protein [Shigella flexneri 2a str. 2457T] gi|332758314|gb|EGJ88637.1| phage Terminase family protein [Shigella flexneri 4343-70] gi|332759348|gb|EGJ89656.1| phage Terminase family protein [Shigella flexneri 2747-71] gi|332761093|gb|EGJ91380.1| phage Terminase family protein [Shigella flexneri K-671] gi|332767370|gb|EGJ97564.1| phage Terminase family protein [Shigella flexneri 2930-71] gi|333005475|gb|EGK24993.1| phage Terminase family protein [Shigella flexneri K-218] gi|333019452|gb|EGK38735.1| phage Terminase family protein [Shigella flexneri K-304] Length = 492 Score = 44.6 bits (103), Expect = 0.025, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 47/232 (20%), Gaps = 25/232 (10%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 WQ + T + R K+T A + W + G I Sbjct: 9 EPWQQFAFACILGFKVKATGRRKYTSAFIEV--PRKNAKSTTAAILANWFLIMENGQQDI 66 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A ++ + + L + +++ K Sbjct: 67 YTAAVSRDQARIVFDNARQMC--------LLSRPLRRRVNIQAHKVIHPKSNSLLKPLAA 118 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 T P DE PD S L P + + Sbjct: 119 KAATIEGTNPS-----------LSIVDEYHLHPDNGVYSALELGMGARPEGLLFAITTSG 167 Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283 D+ +D V + +D I+ Sbjct: 168 SNVVSACKQHY----DYCCQILDGEEVNDSIFVLIYELDDENEVDDPAMWIK 215 >gi|332098281|gb|EGJ03254.1| phage Terminase family protein [Shigella dysenteriae 155-74] Length = 492 Score = 44.6 bits (103), Expect = 0.026, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 48/232 (20%), Gaps = 25/232 (10%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 WQ + T + R K+T A + W + G I Sbjct: 9 EPWQQFAFACILGFKVKATGRRKYTSAFIEV--PRKNAKSTTAAILANWFLIMENGQQDI 66 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A ++ + + + L + +++ K Sbjct: 67 YTAAVSRDQARIVFDDARQMC--------LLSRPLRRRVNIQAHKVMHPKSNSLLKPLAA 118 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 T P DE PD S L P + + Sbjct: 119 KAATIEGTNPS-----------LSIVDEYHLHPDNGVYSALELGMGARPEGLLFAITTSG 167 Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283 D+ +D V + +D I+ Sbjct: 168 SNVVSACKQHY----DYCCQILDGEEVNDSIFVLIYELDDENEVDDPAMWIK 215 >gi|119470499|ref|ZP_01613202.1| ATP-dependent RNA helicase [Alteromonadales bacterium TW-7] gi|119446200|gb|EAW27477.1| ATP-dependent RNA helicase [Alteromonadales bacterium TW-7] Length = 408 Score = 44.6 bits (103), Expect = 0.026, Method: Composition-based stats. Identities = 21/196 (10%), Positives = 40/196 (20%), Gaps = 15/196 (7%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-----SII 111 + SA G GKT + + P ++ Sbjct: 18 KMGYEKPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAIQYLLDFPRREPGFARVL 77 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + + + + +L R L + + + + Sbjct: 78 IMTPTRELAYQ-----IHEQCELLAKR-----THLKIGVVTGGINYGTHKEIFEKNNDVL 127 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 H H + DEA D+ K + + NR + Sbjct: 128 IATPGRLMEYLETENFHAEHVEMLIIDEADRMLDMGFKKEMSRICDEAKNRRQCFLFSAT 187 Query: 232 RLNGWFYDIFNIPLED 247 L D Sbjct: 188 LEGDSVERFAETTLND 203 >gi|315426340|dbj|BAJ47980.1| helicase-associated endonuclease for fork-structured DNA [Candidatus Caldiarchaeum subterraneum] gi|315426365|dbj|BAJ48004.1| helicase-associated endonuclease for fork-structured DNA [Candidatus Caldiarchaeum subterraneum] Length = 694 Score = 44.6 bits (103), Expect = 0.027, Method: Composition-based stats. Identities = 13/142 (9%), Positives = 36/142 (25%), Gaps = 9/142 (6%) Query: 60 EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119 + ++ + + +GKT + + L+ PG I+ +A + Sbjct: 11 DTIEDREYQRSMVEEALRGNTLVVLPTALGKTVIAELVAAELLHRHPGCRILVMAPT--- 67 Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 + +H + + +G +E + + + + Sbjct: 68 ------KPLVLQHRQSFLKHLNISEDEGIAITGEVSESVRKMAWGSPSVRIVFSTPQTAF 121 Query: 180 RPDTFVGPHNTHGMAVFNDEAS 201 + DE Sbjct: 122 NDYRRGWIRLEEFALLVFDECH 143 >gi|197302458|ref|ZP_03167513.1| hypothetical protein RUMLAC_01186 [Ruminococcus lactaris ATCC 29176] gi|197298356|gb|EDY32901.1| hypothetical protein RUMLAC_01186 [Ruminococcus lactaris ATCC 29176] Length = 715 Score = 44.6 bits (103), Expect = 0.027, Method: Composition-based stats. Identities = 25/187 (13%), Positives = 53/187 (28%), Gaps = 13/187 (6%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + HC IF+ + G GKT + L II + + + Sbjct: 215 EILSHCIKEGKQKEG-IFRLTV--PTGGGKTVASLAFALEHAVKNHKDRIIYVIPYTSII 271 Query: 121 KN--TLWAEVSKWLSMLPHRHWFEMQSLSLH--PSGWYAELLEQSMGIDSKHYTITCRTY 176 + ++ E+ ++L + + + +S + + + + Sbjct: 272 EQNAQVFREILGEENVLENHYNVDYESSEEFKPMQLASENWDKPVVVTTN---VQFFESL 328 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT---ELNPNRFWIMTSNTRRL 233 + HN V DEA P K + + + T+ L Sbjct: 329 FANKSSKCRKIHNIANSVVIFDEAQMLPMDYLKPCIAMLQELVDSYSVSIVLCTATQPAL 388 Query: 234 NGWFYDI 240 + +F Sbjct: 389 DSFFSKN 395 >gi|118470437|ref|YP_885678.1| hypothetical protein MSMEG_1288 [Mycobacterium smegmatis str. MC2 155] gi|118171724|gb|ABK72620.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length = 549 Score = 44.6 bits (103), Expect = 0.027, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 38/140 (27%), Gaps = 5/140 (3%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + G G GKT L L G + + S L + L + W Sbjct: 221 RIEVRGGAGSGKTFLAMEQARRLAQ--DGQRVALVCYS-HGLASYLERVTATWPRRQQPA 277 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + E +L + + + + E H AV D Sbjct: 278 YVGEFHALGVQWGAPEGPDEALRTEQTVQFWEHDLPSQMTELAAQLEPGHR--FDAVVVD 335 Query: 199 EASGTPDIINKSILGFFTEL 218 EA D +LG + Sbjct: 336 EAQDFADAWWDPLLGALHDP 355 >gi|227522324|ref|ZP_03952373.1| phage terminase [Lactobacillus hilgardii ATCC 8290] gi|227090531|gb|EEI25843.1| phage terminase [Lactobacillus hilgardii ATCC 8290] Length = 614 Score = 44.6 bits (103), Expect = 0.027, Method: Composition-based stats. Identities = 40/317 (12%), Positives = 86/317 (27%), Gaps = 55/317 (17%) Query: 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP----GMS 109 WQ + +++ R GK+ L ++L+ Sbjct: 108 WQQAILCLSQGWRTKEDKQKRFERCMVSVA--RTNGKSYLLNILILYAYLVEDSDQFNAD 165 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 + +A + Q K + W + + + L F L + + + +S ++ Sbjct: 166 LCYLAPVDKQSKKS-WRYIKQTFNSLQEMPGFR--KLIKDQNIAINDDVLKSTKTQNQIL 222 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEA---SGTPDIINKSILGFFTELNPNRFWIM 226 +T + + H + DE + D+I+K G N F+I Sbjct: 223 RMTAGSAQLD---------AFHFLFATVDEYGDENFNSDVISKVTSGQVQTSNRQTFFIS 273 Query: 227 T--SNTR----RLNGWFYDIFNIPLED---------WKRYQIDTRTVE--GIDSGFH--- 266 T SN + W++ D + S Sbjct: 274 TAYSNPKVPMYSDVRRLTKAMEKDSNRTEDSTLALIWQQDDQDEVDDPETWVKSNPLLDL 333 Query: 267 -------------EGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 E + L + Q + ++ I++++ + D Sbjct: 334 PAKHDTLLKGLISERDSKLEDGTLNDFINRNLNMWLQTAKDKYLKLEDIQKSVVSDFEID 393 Query: 314 LYAPLIMGCDIAGEGGD 330 +G D++ D Sbjct: 394 -NQDCYVGFDLSHASDD 409 >gi|124002988|ref|ZP_01687839.1| hypothetical protein M23134_07453 [Microscilla marina ATCC 23134] gi|123991638|gb|EAY31046.1| hypothetical protein M23134_07453 [Microscilla marina ATCC 23134] Length = 537 Score = 44.6 bits (103), Expect = 0.027, Method: Composition-based stats. Identities = 40/266 (15%), Positives = 70/266 (26%), Gaps = 37/266 (13%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 AG+G GKT + LIS PG+ AN++ QL ++ V L + E Sbjct: 32 MAGQGAGKTHGAGLISFRLISNFPGVFGFMGANTDMQLTDSTLYRVFLVWKDLGLEEYDE 91 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE-----ERPDTFVGPHNTHGMAVFN 197 + G G K Y ++ + + Sbjct: 92 YLGQGDYVVGTQPPRHFSREGHAFKSYRNKISFWNGCVVFIGSLENYKAHDGKEFAWAIL 151 Query: 198 DEASGTPDI-INKSILGFFTELNPNRFWIMT----------SNT---RRLNGWFYDIFNI 243 DE T + + + ILG + + Y + Sbjct: 152 DETKDTREEAVQEVILGRLRQQGLYISQTRAGALTSEEYDEGSPVVANLPFNPLYIFTSP 211 Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-----------FPQQE 292 W D + + E I ++ + ++ G + Sbjct: 212 AKVPWIN---DWFELS----EYEEEIKAKIYDPPQYFKKKVGGDSKFVVISATHLNLKNL 264 Query: 293 VNNFIPHNYIEEAMSREAIDDLYAPL 318 +N+I A R + PL Sbjct: 265 PSNYIKKQEANLASHRHGMLIYGDPL 290 >gi|320581264|gb|EFW95485.1| Essential tripartite DNA replication factor [Pichia angusta DL-1] Length = 1226 Score = 44.6 bits (103), Expect = 0.027, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 33/123 (26%), Gaps = 7/123 (5%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTT+ A ++ G +++ + + + + N L + + R + Sbjct: 878 GTGKTTVTASLI--KCLVENGQTVLIASYTHSAVDNILEKVIDIVDNPKILRVGAPKKIT 935 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITC-----RTYSEERPDTFVGPHNTHGMAVFNDEAS 201 ++ + + H H DEAS Sbjct: 936 EKVRKYSLYSTDTIYPMESAEDFRHAFLETNIVATTCLGIQDTAFIHRQHFDYCIIDEAS 995 Query: 202 GTP 204 Sbjct: 996 QVS 998 >gi|283455514|ref|YP_003360078.1| gp26 [Bifidobacterium dentium Bd1] gi|283102148|gb|ADB09254.1| gp26 [Bifidobacterium dentium Bd1] Length = 480 Score = 44.6 bits (103), Expect = 0.027, Method: Composition-based stats. Identities = 36/307 (11%), Positives = 66/307 (21%), Gaps = 55/307 (17%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ + + + +S R GK+TL P I Sbjct: 33 PWQRYVADVAGE---IDPATGTYYYDRVILSTPRQCGKSTLIDTEDTRNAQLGPDRKIYY 89 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 +A + + ++ L + +G + + Sbjct: 90 LAQTGKDAE----KHFKDYVQQLAKSRLAPIACRPRLSNGGM------EQRFINGSFIC- 138 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI------M 226 T V H T DEA D K IL R + Sbjct: 139 ------PLAVTKVAGHGTQMDKFTIDEAFSLDDETGKLILDGMAPTMNTRLHFTGVQPQI 192 Query: 227 TSNTRRLN--------------------GWFYDIFNIPLE-DWKRYQIDTRTVEGIDSGF 265 + + F IP + D + Q + + Sbjct: 193 WITSTEGTADSTFLNGLLDGLRAGDVPRRTCWFDFGIPADADPEDLQTILKWHPAAGLLW 252 Query: 266 HEGIISRYG---LDSDVARIEILGQFPQQE-VNNFIPHNYIEEAMSREAIDDL--YAPLI 319 + + + G + I + ++ D PL+ Sbjct: 253 GLDQLRDFRGQFEGNAAGWARAFGNRRDTGVADRVIDETLWQATVATPIGPDRLDGRPLV 312 Query: 320 --MGCDI 324 D+ Sbjct: 313 FAAAVDV 319 >gi|221640075|ref|YP_002526337.1| DNA helicase [Rhodobacter sphaeroides KD131] gi|221160856|gb|ACM01836.1| DNA helicase [Rhodobacter sphaeroides KD131] Length = 1695 Score = 44.6 bits (103), Expect = 0.027, Method: Composition-based stats. Identities = 40/343 (11%), Positives = 84/343 (24%), Gaps = 31/343 (9%) Query: 10 KLEQELHEMLMHAECVLSFKN-----FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64 E+ L + + F+ R+ P +G L + W + +E + Sbjct: 1023 YAEKGLERIEEAVRLSEDYFALDQESFLRRWMP--GRGVELRRQTTGKAW-KQIVEDLGN 1079 Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS-TRPGMS-IICIANSETQLKN 122 + + + AG G GKT + + +L+ R I+ ++ + Sbjct: 1080 PVQQEIVADDREETNVLVLAGPGSGKTRVLVHRIAYLLRVKREDPRGILVLSYNRHAAAE 1139 Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182 +L++ G R + E Sbjct: 1140 IRARLRHLVGEDAARVTVSTCHALAMRLVGASFTGGTAEQRDFQDVLREAVRQINGEGLS 1199 Query: 183 TFVGPHNTHGMA-----VFNDEASGTPDIINKSILG----FFTELNPNRFWIMTSNTRRL 233 + + DE I + + Sbjct: 1200 RTEAEAQREALIQGYRWILVDEYQDIGREEYDLIAAVAGRSLEDPDQRLSLFAVG---DD 1256 Query: 234 NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV---ARIEILGQFPQ 290 + Y + +R++ D R + + + V AR + + P Sbjct: 1257 DQNIYAFNGASVSYIRRFEEDYRARPKFLTENYRSTRHIVEAANQVIEPARGRMKARHPI 1316 Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTV 333 + + AM+R + D+A D T Sbjct: 1317 TV-DKMRSLDPGGGAMARHDPVGQGR--VQFLDVA---ADDTA 1353 >gi|254476244|ref|ZP_05089630.1| conserved hypothetical protein [Ruegeria sp. R11] gi|214030487|gb|EEB71322.1| conserved hypothetical protein [Ruegeria sp. R11] Length = 1106 Score = 44.6 bits (103), Expect = 0.027, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 39/122 (31%), Gaps = 7/122 (5%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + G GKT + A +L L+ R G I +NS +KN L + P Sbjct: 728 VQGPPGTGKTYVTARAILALL--REGKRIGVASNSHEAVKNVLLGVLEALAPEDPDIEIL 785 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 S ++P + + + + + + R +F DEA Sbjct: 786 HKLSDDIYPDDCPIARVTDNGRAEEGLHLVGGTVFFFAREANRQRF-----DYIFVDEAG 840 Query: 202 GT 203 Sbjct: 841 QV 842 >gi|198274524|ref|ZP_03207056.1| hypothetical protein BACPLE_00672 [Bacteroides plebeius DSM 17135] gi|198272578|gb|EDY96847.1| hypothetical protein BACPLE_00672 [Bacteroides plebeius DSM 17135] Length = 482 Score = 44.6 bits (103), Expect = 0.027, Method: Composition-based stats. Identities = 33/280 (11%), Positives = 75/280 (26%), Gaps = 12/280 (4%) Query: 58 FMEAVDV-HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 F++ V + S I++ A+S GK+ +++ + W++ P S++ Sbjct: 48 FLKKVAEAFMRVYESYSAGIIYRLAVSMPPRAGKSYISSLFIAWMLGHFPEESVM----- 102 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 +TL+ ++S + F ++ G + ++ + Sbjct: 103 RNCCSDTLYNKLSYDARDIVKSKRFHEIFPDIYLKGDKQNVKSWNVEGARQVSYFGGGVG 162 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP---NRFWIMTSNTRRL 233 T + ++A + T + N I Sbjct: 163 GTVIGFGASMLAMTDDLYKSLEDALSDNNNEKVWSWKQGTHDSRIEGNCCLIDIGTRWSA 222 Query: 234 NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF---PQ 290 N + + E L S+ + ++ P Sbjct: 223 NDVLGRLEEAGKYNEIIRIAALDENERSFCEDVHTTEYYLELRSETDESIWMAEYMQEPF 282 Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGD 330 + P + + + I CD A +G D Sbjct: 283 EAKGLLFPKSSLMRFKLADIAGKRPDGTIGACDTADKGDD 322 >gi|67611038|ref|XP_667129.1| hypothetical protein [Cryptosporidium hominis TU502] gi|54658236|gb|EAL36904.1| hypothetical protein Chro.80234 [Cryptosporidium hominis] Length = 991 Score = 44.6 bits (103), Expect = 0.027, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 5/127 (3%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL-WAEVSKW-LSMLPH 137 +++AGRG GK+ + L ++ +I A S + + E+ L L H Sbjct: 296 ISLTAGRGRGKSAAL-GLSLACAVSQGFSNIFITAPSAENVLTVFEFIEIGLQSLGYLEH 354 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 +H+ ++S ++ S I + +T +P+ + V Sbjct: 355 KHFELVRSKTIDSRVGGDFSHSVSRLIRVNIFKDHRQTIQYIKPEDYHLVS--QAEIVVM 412 Query: 198 DEASGTP 204 DEA+ P Sbjct: 413 DEAAAIP 419 >gi|66359852|ref|XP_627104.1| KRE33p like superfamily I ATPAse fused to an acetylase [Cryptosporidium parvum Iowa II] gi|46228529|gb|EAK89399.1| KRE33p like superfamily I ATPAse fused to an acetylase [Cryptosporidium parvum Iowa II] Length = 1058 Score = 44.6 bits (103), Expect = 0.027, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 5/127 (3%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL-WAEVSKW-LSMLPH 137 +++AGRG GK+ + L ++ +I A S + + E+ L L H Sbjct: 296 ISLTAGRGRGKSAAL-GLSLACAVSQGFSNIFITAPSAENVLTVFEFIEIGLQSLGYLEH 354 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 +H+ ++S ++ S I + +T +P+ + V Sbjct: 355 KHFELVRSKTIDSRVGGDFSHSVSRLIRVNIFKDHRQTIQYIKPEDYHLVS--QAEIVVM 412 Query: 198 DEASGTP 204 DEA+ P Sbjct: 413 DEAAAIP 419 >gi|56964603|ref|YP_176334.1| terminase large subunit G2p [Bacillus clausii KSM-K16] gi|56910846|dbj|BAD65373.1| terminase large subunit G2p [Bacillus clausii KSM-K16] Length = 426 Score = 44.6 bits (103), Expect = 0.027, Method: Composition-based stats. Identities = 24/240 (10%), Positives = 64/240 (26%), Gaps = 25/240 (10%) Query: 98 MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 + + R ++ + I + ++ +++ ++ + + H F++ + Sbjct: 46 AVVQLLMRYPINGVGIRKIDNTIELSVFEQIKWAIDVHGVSHLFKINKSPMR-------- 97 Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSILGFFT 216 + + + R +E + N + +E A + +I Sbjct: 98 ----ITYKPRGNYMVFRGAAEPERIKSLKSANFPFAFAWIEELAEFKTEDEVTTITNSLL 153 Query: 217 EL----NPNRFWIMTSNTR-RLNGWFYDIFNIPLEDWKRY--QIDTRTVEGIDSGFHEGI 269 + + N R W + + + I F E Sbjct: 154 RGELDNGLFYKFFYSYNPPKRKQSWVNKKYETSFQPTNTFVHHSTYLDNPFISKQFIEEA 213 Query: 270 ISRYGLDSDVARIEILGQFPQQ-----EVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDI 324 + + R E LG+ + P +E +++ G D Sbjct: 214 EATKERNEKRYRWEYLGEAIGSGIVPFDNLTVKPGIITDEMVAQFDNIRQGQDYGYGPDP 273 >gi|325092077|gb|EGC45387.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces capsulatus H88] Length = 2017 Score = 44.6 bits (103), Expect = 0.028, Method: Composition-based stats. Identities = 18/152 (11%), Positives = 38/152 (25%), Gaps = 18/152 (11%) Query: 58 FMEAVDVHCHSNVNNSNPTIF--------KCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +E + N IF + + G GKT M W +PG Sbjct: 1133 ILEDIYAQRFQFFNPMQTQIFHTLYHTPANVLLGSPTGSGKTVAAELAMWWAFREKPGSK 1192 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ IA + ++ + + + + + E+ + + + + Sbjct: 1193 VVYIAPMKALVRERVQDWRRRLTAPMGLK-LVELTGDNTPDTRTIRDADIIITTPEKWDG 1251 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 V DE Sbjct: 1252 ISRSWQTRGYV---------RQVSLVIIDEIH 1274 >gi|299133515|ref|ZP_07026709.1| protein of unknown function DUF264 [Afipia sp. 1NLS2] gi|298591351|gb|EFI51552.1| protein of unknown function DUF264 [Afipia sp. 1NLS2] Length = 239 Score = 44.6 bits (103), Expect = 0.028, Method: Composition-based stats. Identities = 20/159 (12%), Positives = 37/159 (23%), Gaps = 28/159 (17%) Query: 84 AGRGIGKTTLNAWMM------LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 GRG GKT A + L ++ P I + +E ++ + VS L++ Sbjct: 54 GGRGAGKTRAGAEWIRAQALGLSPLAAAPAGRIALVGETEHDVREVMIEGVSGLLAVHRR 113 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + ++ Sbjct: 114 DERPVWLPSRKRLE------------------WNNGAVAYAFSAEDPESLRGPQFSCAWS 155 Query: 198 DEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 DE + D + R + + T R Sbjct: 156 DELAKWRYADAAFDMLQFGLRLGAQPRQ--LITTTPRPT 192 >gi|260424777|ref|ZP_05733258.2| PhoH family protein [Dialister invisus DSM 15470] gi|260403160|gb|EEW96707.1| PhoH family protein [Dialister invisus DSM 15470] Length = 319 Score = 44.6 bits (103), Expect = 0.028, Method: Composition-based stats. Identities = 29/256 (11%), Positives = 65/256 (25%), Gaps = 39/256 (15%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCA-----ISAGR-----------GIGKTTLNA 95 ++E + + + N + + A R G GKT L Sbjct: 75 DEGKMELLHEMKEDIINLTRNGEAVRPRTLGQKMYVDAIRRNSITFGVGPAGTGKTYLAV 134 Query: 96 WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 + + + II + + + L + ++ + + Sbjct: 135 ALGAFFLKNHDVRRIILVRPA------------VEAGEKLGFLPGDMQEKVNPYLRPLFD 182 Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 L M + + + E P ++ V DEA + + + F Sbjct: 183 GL--LDMFGPEEFIRLQQKGQIEVVPLAYMRGRTLEKSFVILDEAQ---NTTVEQLKMFL 237 Query: 216 TELNPNRFWIMTSN------TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI 269 T L ++ + + D + + + + I Sbjct: 238 TRLGDRSKMVINGDVTQIDLPPHVKSGLIDAQRVLANVSDIESVTFTEDDVVRHDLVAAI 297 Query: 270 ISRYGLDSDVARIEIL 285 I Y D+ R + Sbjct: 298 IHAYEEDTKKKRQGVE 313 >gi|240281429|gb|EER44932.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces capsulatus H143] Length = 1999 Score = 44.6 bits (103), Expect = 0.028, Method: Composition-based stats. Identities = 18/152 (11%), Positives = 38/152 (25%), Gaps = 18/152 (11%) Query: 58 FMEAVDVHCHSNVNNSNPTIF--------KCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +E + N IF + + G GKT M W +PG Sbjct: 1106 ILEDIYAQRFQFFNPMQTQIFHTLYHTPANVLLGSPTGSGKTVAAELAMWWAFREKPGSK 1165 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ IA + ++ + + + + + E+ + + + + Sbjct: 1166 VVYIAPMKALVRERVQDWRRRLTAPMGLK-LVELTGDNTPDTRTIRDADIIITTPEKWDG 1224 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 V DE Sbjct: 1225 ISRSWQTRGYV---------RQVSLVIIDEIH 1247 >gi|170783661|ref|YP_001648943.1| putative large subunit terminase [Enterobacteria phage Min27] gi|163955755|gb|ABY49905.1| putative large subunit terminase [Enterobacteria phage Min27] Length = 568 Score = 44.6 bits (103), Expect = 0.028, Method: Composition-based stats. Identities = 29/290 (10%), Positives = 64/290 (22%), Gaps = 40/290 (13%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEA 61 PR + E E +M + + + + + L F Q + + Sbjct: 8 PRCDEPSEMTEAEQRLFIMTK--LSNPWWRLNHLYKIQNEKGELVTFRM-RPAQRQLFRS 64 Query: 62 VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121 + K I R +G +T +L P + +A + Sbjct: 65 MHN--------------KNIILKARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQAAS 110 Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 +++ LP + + ++ Sbjct: 111 EIFRTKIAVPFDHLPDWLRASFTIVERRSGASG-----GYILFGHGSSIQVATSFRSGTV 165 Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241 + + P + G ++ S + G FY++ Sbjct: 166 QRLHISEHGKI-------CAKYPAKAKELRTGTLNAVSDECIIFDESTAEGVGGDFYEMS 218 Query: 242 NIPLE-----------DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280 N E D+K + + E + Sbjct: 219 NRAQEIAASGLLLTAQDYKFHFYAWWQDPKYSARVPESGLKLSREKMTYF 268 >gi|156847104|ref|XP_001646437.1| hypothetical protein Kpol_1048p9 [Vanderwaltozyma polyspora DSM 70294] gi|156117114|gb|EDO18579.1| hypothetical protein Kpol_1048p9 [Vanderwaltozyma polyspora DSM 70294] Length = 1055 Score = 44.6 bits (103), Expect = 0.028, Method: Composition-based stats. Identities = 36/259 (13%), Positives = 76/259 (29%), Gaps = 46/259 (17%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 ++AGRG GK+ + + + +I + S LK L+ + K L ++ Sbjct: 279 VTLTAGRGRGKSAAL-GISIAAAVSHGYSNIFVTSPSPENLKT-LFEFIFKAFDALGYQE 336 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + ++ + D + + V DE Sbjct: 337 HIDYDIIQSTNPQFNKAIVRVDIKRDHRQTIQYIMPQDHQVLGQAE--------LVVIDE 388 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 A+ P I K +LG + F T N G+ ++ L+ ++ + + T Sbjct: 389 AAAIPLPIVKKLLGSYL-----VFMASTIN-----GYEGTGRSLSLKLIQQLRTQSTTSG 438 Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL- 318 +S + DS + E ++ P+ Sbjct: 439 RENSQTEIVSRDKKQTDSGIYDS---------------ARQLREISLDEPIRYAPGDPVE 483 Query: 319 -----IMGCDI-----AGE 327 ++ D+ A Sbjct: 484 KWLNKLLCLDVTLMKSARF 502 >gi|154272686|ref|XP_001537195.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces capsulatus NAm1] gi|150415707|gb|EDN11051.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces capsulatus NAm1] Length = 1992 Score = 44.6 bits (103), Expect = 0.028, Method: Composition-based stats. Identities = 18/152 (11%), Positives = 38/152 (25%), Gaps = 18/152 (11%) Query: 58 FMEAVDVHCHSNVNNSNPTIF--------KCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +E + N IF + + G GKT M W +PG Sbjct: 1133 ILEDIYAQRFQFFNPMQTQIFHTLYHTAANVLLGSPTGSGKTVAAELAMWWAFREKPGSK 1192 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ IA + ++ + + + + + E+ + + + + Sbjct: 1193 VVYIAPMKALVRERVQDWRRRLTAPMGLK-LVELTGDNTPDTRTIRDADIIITTPEKWDG 1251 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 V DE Sbjct: 1252 ISRSWQTRGYV---------RQVSLVIIDEIH 1274 >gi|332559068|ref|ZP_08413390.1| DNA helicase [Rhodobacter sphaeroides WS8N] gi|332276780|gb|EGJ22095.1| DNA helicase [Rhodobacter sphaeroides WS8N] Length = 1679 Score = 44.6 bits (103), Expect = 0.028, Method: Composition-based stats. Identities = 40/343 (11%), Positives = 84/343 (24%), Gaps = 31/343 (9%) Query: 10 KLEQELHEMLMHAECVLSFKN-----FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64 E+ L + + F+ R+ P +G L + W + +E + Sbjct: 1007 YAEKGLERIEEAVRLSEDYFALDQESFLRRWMP--GRGVELRRQTTGKAW-KQIVEDLGN 1063 Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS-TRPGMS-IICIANSETQLKN 122 + + + AG G GKT + + +L+ R I+ ++ + Sbjct: 1064 PVQQEIVADDREETNVLVLAGPGSGKTRVLVHRIAYLLRVKREDPRGILVLSYNRHAAAE 1123 Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182 +L++ G R + E Sbjct: 1124 IRARLRHLVGEDAARVTVSTCHALAMRLVGASFTGGTAEQRDFQDVLREAVRQINGEGLS 1183 Query: 183 TFVGPHNTHGMA-----VFNDEASGTPDIINKSILG----FFTELNPNRFWIMTSNTRRL 233 + + DE I + + Sbjct: 1184 RTEAEAQREALIQGYRWILVDEYQDIGREEYDLIAAVAGRSLEDPDQRLSLFAVG---DD 1240 Query: 234 NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV---ARIEILGQFPQ 290 + Y + +R++ D R + + + V AR + + P Sbjct: 1241 DQNIYAFNGASVSYIRRFEEDYRARPKFLTENYRSTRHIVEAANQVIEPARGRMKARHPI 1300 Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTV 333 + + AM+R + D+A D T Sbjct: 1301 TV-DKMRSLDPGGGAMARHDPVGQGR--VQFLDVA---ADDTA 1337 >gi|225156110|ref|ZP_03724592.1| hypothetical protein ObacDRAFT_8756 [Opitutaceae bacterium TAV2] gi|224803207|gb|EEG21448.1| hypothetical protein ObacDRAFT_8756 [Opitutaceae bacterium TAV2] Length = 301 Score = 44.6 bits (103), Expect = 0.028, Method: Composition-based stats. Identities = 24/169 (14%), Positives = 50/169 (29%), Gaps = 10/169 (5%) Query: 86 RGIGKTTLNAWMMLWLISTRPG-------MSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 R +GK+ A L + R SI+ + + + K+ + + Sbjct: 31 RQLGKSFTLASKGLSRMILRKNHLCVFGSASILLGSEFIRKEAEVWQKVMEKFRQIAKDK 90 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + + +L E ++ T + S G VF D Sbjct: 91 NLLLTTNADGLDFDAVCDLFEHQKLETRIYHDRTSYSRSRVVAPNPATAVGWTGD-VFLD 149 Query: 199 EASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL 245 E P I ++++ W+ T+ + +++F P Sbjct: 150 EVGRIPGLKDILEAVMPIMESNPEFIMWMATTPPPDDKHYSFELFQPPS 198 >gi|327355898|gb|EGE84755.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces dermatitidis ATCC 18188] Length = 2024 Score = 44.6 bits (103), Expect = 0.029, Method: Composition-based stats. Identities = 18/152 (11%), Positives = 38/152 (25%), Gaps = 18/152 (11%) Query: 58 FMEAVDVHCHSNVNNSNPTIF--------KCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +E + N IF + + G GKT M W +PG Sbjct: 1131 ILEEIYAQRFQFFNPMQTQIFHTLYHTPANVLLGSPTGSGKTVAAELAMWWAFREKPGSK 1190 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ IA + ++ + + + + + E+ + + + + Sbjct: 1191 VVYIAPMKALVRERVHDWRRRLTAPMGLK-LVELTGDNTPDTRTIRDADIIITTPEKWDG 1249 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 V DE Sbjct: 1250 ISRSWQTRGYV---------RQVSLVIIDEIH 1272 >gi|291000973|ref|XP_002683053.1| predicted protein [Naegleria gruberi] gi|284096682|gb|EFC50309.1| predicted protein [Naegleria gruberi] Length = 926 Score = 44.6 bits (103), Expect = 0.029, Method: Composition-based stats. Identities = 27/202 (13%), Positives = 63/202 (31%), Gaps = 22/202 (10%) Query: 5 ISTDQKLEQELHEMLMHAECVL--SFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAV 62 + E+ L ++ + K+ + P G Q + + Sbjct: 243 KPIVLQEEERLENHILSPKEKDLVDLKHKLEENQPLGTLVSQARSLD-----QAKAILKF 297 Query: 63 DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN 122 + A+ A RG GK+ + + + +I + S LK Sbjct: 298 VDAISEKSLQTT-----VALLASRGRGKSAAL-GLAIASAVSYGYSNIFVTSPSPENLKT 351 Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182 L+ + K L +L +R + + + + ++ ++ + + +T +P+ Sbjct: 352 -LFEFIIKGLEVLKYRDQQDYEIVQSTNPAFNNAVVRLNIFKNHR------QTIQYIQPE 404 Query: 183 TFVGPHNTHGMAVFNDEASGTP 204 + DEA+ P Sbjct: 405 DSQKLG--QCELLVIDEAAAIP 424 >gi|282919808|ref|ZP_06327540.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus C427] gi|282316446|gb|EFB46823.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus C427] Length = 498 Score = 44.6 bits (103), Expect = 0.029, Method: Composition-based stats. Identities = 28/283 (9%), Positives = 77/283 (27%), Gaps = 55/283 (19%) Query: 82 ISAGRGIGKTTLNAWM----MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 IS R GK+ + + M +L+ + I +++ Q + + S+ ++++ Sbjct: 30 ISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQTI-FKMASQQVNLMRS 88 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + F + + + + + + V Sbjct: 89 KSKFIREKTDVR---------KTDIEDVLSSSVFAPLS------NNPDAVDGKDPTVVIL 133 Query: 198 DEASGTPDIINKSILGF-FTELNPNRFWIMTSNTRRLNGWFYDIF--------------- 241 DE + PD S T ++++ LN Y + Sbjct: 134 DELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEEVRADN 193 Query: 242 -----------NIPLEDWKRYQID----TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 ++ K + ++ + I ++ Sbjct: 194 YFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADIQDELEKGTSYHKILIK 253 Query: 287 QFP---QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAG 326 F Q ++ + + E+ ++ + + +G D++ Sbjct: 254 NFNLWQAQREDSLLDISDWEQVITPMPNIN-GKDVYIGVDLSR 295 >gi|239609198|gb|EEQ86185.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces dermatitidis ER-3] Length = 2024 Score = 44.6 bits (103), Expect = 0.029, Method: Composition-based stats. Identities = 18/152 (11%), Positives = 38/152 (25%), Gaps = 18/152 (11%) Query: 58 FMEAVDVHCHSNVNNSNPTIF--------KCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +E + N IF + + G GKT M W +PG Sbjct: 1131 ILEEIYAQRFQFFNPMQTQIFHTLYHTPANVLLGSPTGSGKTVAAELAMWWAFREKPGSK 1190 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ IA + ++ + + + + + E+ + + + + Sbjct: 1191 VVYIAPMKALVRERVHDWRRRLTAPMGLK-LVELTGDNTPDTRTIRDADIIITTPEKWDG 1249 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 V DE Sbjct: 1250 ISRSWQTRGYV---------RQVSLVIIDEIH 1272 >gi|261189015|ref|XP_002620920.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces dermatitidis SLH14081] gi|239591924|gb|EEQ74505.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces dermatitidis SLH14081] Length = 2024 Score = 44.6 bits (103), Expect = 0.029, Method: Composition-based stats. Identities = 18/152 (11%), Positives = 38/152 (25%), Gaps = 18/152 (11%) Query: 58 FMEAVDVHCHSNVNNSNPTIF--------KCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +E + N IF + + G GKT M W +PG Sbjct: 1131 ILEEIYAQRFQFFNPMQTQIFHTLYHTPANVLLGSPTGSGKTVAAELAMWWAFREKPGSK 1190 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ IA + ++ + + + + + E+ + + + + Sbjct: 1191 VVYIAPMKALVRERVHDWRRRLTAPMGLK-LVELTGDNTPDTRTIRDADIIITTPEKWDG 1249 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 V DE Sbjct: 1250 ISRSWQTRGYV---------RQVSLVIIDEIH 1272 >gi|195546532|ref|YP_002117560.1| terminase large subunit [Rhizobium phage 16-3] gi|102642474|gb|ABF71255.1| terminase large subunit [Rhizobium phage 16-3] Length = 525 Score = 44.6 bits (103), Expect = 0.029, Method: Composition-based stats. Identities = 37/249 (14%), Positives = 64/249 (25%), Gaps = 34/249 (13%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 +G L + +Q +F+ AV + +I+ R GKT L A ++L Sbjct: 24 EGTLLGKPVKLLPFQRKFILAVYDNPAGTSRAY------LSIA--RKNGKTGLIACLLLA 75 Query: 101 LI---STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 I I+ A S Q AEV + + + + + PS Sbjct: 76 HIVGPEAYQNGRIVSGARSRKQA-----AEVFNYAAKMVMMSTELSKLARIVPSAKMIVG 130 Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT---PDIINKSILGF 214 L +++ + H + DE D ++I Sbjct: 131 LAKNVEYQASSA-------------EAKSAHGGSPILAILDEVGQIKGPTDDFVEAIETS 177 Query: 215 FTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK--RYQIDTRTVEGIDSGFHEGIISR 272 S + + + E K R T + Sbjct: 178 QGAYEGRAMLFAISTQAATDNDLFSRWIDDAETSKDPRIVSHIYTAPADCELDDREAWAA 237 Query: 273 YGLDSDVAR 281 V R Sbjct: 238 ANPALGVFR 246 >gi|77464192|ref|YP_353696.1| DNA helicase [Rhodobacter sphaeroides 2.4.1] gi|77388610|gb|ABA79795.1| Possible DNA helicase [Rhodobacter sphaeroides 2.4.1] Length = 1715 Score = 44.6 bits (103), Expect = 0.029, Method: Composition-based stats. Identities = 43/345 (12%), Positives = 88/345 (25%), Gaps = 35/345 (10%) Query: 10 KLEQELHEMLMHAECVLSFKN-----FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64 E+ L + + F+ R+ P +G L + W + +E + Sbjct: 1043 YAEKGLERIEEAVRLSEDYFALDQESFLRRWMP--GRGVELRRQTTGKAW-KQIVEDLGN 1099 Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS-TRPGMS-IICIANSETQLKN 122 + + + AG G GKT + + +L+ R I+ ++ + Sbjct: 1100 PVQQEIVADDREETNVLVLAGPGSGKTRVLVHRIAYLLRVKREDPRGILVLSYNRHAAAE 1159 Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHP-----SGWYAELLEQSMGIDSKHYTITCRTYS 177 +L++ +G AE + + I S Sbjct: 1160 IRARLRHLVGEDAARVTVSTCHALAMRLVGASFTGGTAEQHDFQDVLREAVRQINGEGLS 1219 Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG----FFTELNPNRFWIMTSNTRRL 233 + + DE I + + Sbjct: 1220 RTEAEAQREALIQGYRWILVDEYQDIGREEYDLIAAVAGRSLEDPDQRLSLFAVG---DD 1276 Query: 234 NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV---ARIEILGQFPQ 290 + Y + +R++ D R + + + V AR + + P Sbjct: 1277 DQNIYAFNGASVSYIRRFEEDYRARPKFLTENYRSTRHIVEAANQVIEPARGRMKARHPI 1336 Query: 291 QEVN--NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTV 333 + P AM+R + D+A D T Sbjct: 1337 TVDKMRSLYPGG---GAMARHDPVGQGR--VQFLDVA---ADDTA 1373 >gi|283768970|ref|ZP_06341876.1| DEAD/DEAH box helicase [Bulleidia extructa W1219] gi|283104327|gb|EFC05704.1| DEAD/DEAH box helicase [Bulleidia extructa W1219] Length = 891 Score = 44.2 bits (102), Expect = 0.029, Method: Composition-based stats. Identities = 33/270 (12%), Positives = 69/270 (25%), Gaps = 46/270 (17%) Query: 42 GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101 L+ +Q + ++ + K I A G GKTTL Sbjct: 7 DNHLQFKGAFRDYQKKILDQATTYLKDK---------KIHIVAPPGSGKTTLG-----IE 52 Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWL----------SMLPHRHWFEMQSLSLHPS 151 + R G + I+ ++N + + S++ + + +L + Sbjct: 53 LIRRLGKRALIISPRLV-IRNQWIQRIEEAFLLDHSITLSTSLVENSDITSITYQTLFSA 111 Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211 + E+ YS+ + DE K++ Sbjct: 112 MTRFKGEERDDQETDDVVEKNEVDYSQFDF--IKNIKENPIEVICLDECHHLHKEWWKAL 169 Query: 212 LGFFTELNPN--RFWIMTSNTRRLNGWFYDIFNIPLEDWKRY--QIDTRTVEGIDSGFHE 267 F + + + +T+ ++ +W RY E + Sbjct: 170 EEFISTIGRDHVTIISLTATPP---------YDAQKSEWNRYIQMCGEVDEEISIPELVK 220 Query: 268 GIISRYGLDSDVARIEILGQFPQQEVNNFI 297 D +L +P I Sbjct: 221 EKNLCPHQD------YVLFSYPTANERKVI 244 >gi|229493797|ref|ZP_04387575.1| RecB family nuclease, family protein [Rhodococcus erythropolis SK121] gi|229319296|gb|EEN85139.1| RecB family nuclease, family protein [Rhodococcus erythropolis SK121] Length = 1147 Score = 44.2 bits (102), Expect = 0.029, Method: Composition-based stats. Identities = 23/201 (11%), Positives = 51/201 (25%), Gaps = 11/201 (5%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 A+ G GKT A ++ LI I +A S + ++N L + + Sbjct: 770 VAVQGPPGTGKTYTGARVVKTLIEQH-HWRIGVVAQSHSVVENMLGGILKAGVDPALVAK 828 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + E + I + D + DE Sbjct: 829 KGSRSKTAEWQDIASEEYAGFIAEAEGVGCVIGGTAWDFSNTDR---VPAGSLDLLVVDE 885 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 A ++ R ++ + ++L P+++ Sbjct: 886 AGQF------ALANTIAVAISARNLLLLGDPQQLPQVSQGTHPEPVDE-SALGWLAEGHG 938 Query: 260 GIDSGFHEGIISRYGLDSDVA 280 + + + + D+ Sbjct: 939 ALPPELGYFLEKTWRMHPDLC 959 >gi|146279552|ref|YP_001169710.1| hypothetical protein Rsph17025_3535 [Rhodobacter sphaeroides ATCC 17025] gi|145557793|gb|ABP72405.1| hypothetical protein Rsph17025_3535 [Rhodobacter sphaeroides ATCC 17025] Length = 815 Score = 44.2 bits (102), Expect = 0.029, Method: Composition-based stats. Identities = 19/194 (9%), Positives = 52/194 (26%), Gaps = 12/194 (6%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 +P +Q+ + A + + G GKT ++ Sbjct: 161 GSGKEPRYYQINAVNAAIEAIARGN-------RRVLLVMATGTGKTYTAFQIIWRYRQAF 213 Query: 106 PGMSIICIANSETQLKNTL---WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162 PG ++ +A+ + T+ + S ++ L + ++ ++ + Sbjct: 214 PGKRVLFLADRNVLIDQTMVNDFRPFSGKMAKLSTQAKTIERADGSTVDLPLGLDRKRRI 273 Query: 163 GIDSKHYTITCRTYSEERPDT--FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220 + Y + + + F + DE + + + Sbjct: 274 DPSYEIYLGLYQAITGPAEEDKIFRELSRDFFDLIIIDECHRGSAAEDSAWREILDHFSG 333 Query: 221 NRFWIMTSNTRRLN 234 MT+ + Sbjct: 334 AVQIGMTATPKETE 347 >gi|321265233|ref|XP_003197333.1| member of the DEAH family of helicases; Mph1p [Cryptococcus gattii WM276] gi|317463812|gb|ADV25546.1| Member of the DEAH family of helicases, putative; Mph1p [Cryptococcus gattii WM276] Length = 1517 Score = 44.2 bits (102), Expect = 0.029, Method: Composition-based stats. Identities = 26/186 (13%), Positives = 60/186 (32%), Gaps = 25/186 (13%) Query: 49 SQP-HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107 + P +Q E + + ++ G+GKT + +ML P Sbjct: 280 NHPKRDYQFEIIRN-------------CFLDNTLVALPTGLGKTFVAGVVMLNFYRWFPT 326 Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 I+ +A + V++ + + ++ A + + + + Sbjct: 327 GKIVFLAPTR--------PLVAQQIEACQLSCGIPSRDAAVMTGEGGARKGRERLWEEKR 378 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP-DIINKSILGFFTELNPNRFWIM 226 + T +T + + V P + V DEA + +I+ + T +P + Sbjct: 379 VFYCTPQTLDNDLKNGAVDP--QDIVLVVLDEAHKATGNYAYTTIVAYLTAHHPYFRVLA 436 Query: 227 TSNTRR 232 + T Sbjct: 437 LTATPG 442 >gi|227431755|ref|ZP_03913782.1| terminase large subunit [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352438|gb|EEJ42637.1| terminase large subunit [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 598 Score = 44.2 bits (102), Expect = 0.029, Method: Composition-based stats. Identities = 33/270 (12%), Positives = 70/270 (25%), Gaps = 28/270 (10%) Query: 86 RGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 R GKTTL + + ++ G I +AN Q + L+ E K + P + + Sbjct: 147 RKNGKTTLISGLASYMAGFDNEKGAQIYALANRADQSR-LLFEETGKMIKASPFLNDRFV 205 Query: 144 QSLSLHPSGWYAELLEQSMGIDSK-----------HYTITCRTYSEERPDTFVGPHNTHG 192 +++ S + YS + Sbjct: 206 TKNKEIDYPKTESVIKALSAEKSGKDGYNTHMAVFDEIHEYKDYSLINVMRNSMGMRSQP 265 Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252 M ++ A + ++ N ++Y + + Sbjct: 266 MTIYITTAGYELNGPLVEMIAT-----ARGVLSHYENNENERTFYYLAAMDSENEIDDPE 320 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDV------ARIEILGQFPQQEVNNFIPHNYIEEAM 306 + + ++S + V ++ F + +F + I Sbjct: 321 LWIKANPNFPMMQGLNMLSSWKSSRRVPGEKLDWITKVFNIFSESSELSFFDNETILSNA 380 Query: 307 SREAIDDLYA--PLIMGCDIAGEGGDKTVV 334 D + G D++ D T V Sbjct: 381 ENHIDLDELKLIRPVAGFDLSET-EDFTAV 409 >gi|226307591|ref|YP_002767551.1| hypothetical protein RER_41040 [Rhodococcus erythropolis PR4] gi|226186708|dbj|BAH34812.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length = 1147 Score = 44.2 bits (102), Expect = 0.029, Method: Composition-based stats. Identities = 23/201 (11%), Positives = 51/201 (25%), Gaps = 11/201 (5%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 A+ G GKT A ++ LI I +A S + ++N L + + Sbjct: 770 VAVQGPPGTGKTYTGARVVKTLIEQHQ-WRIGVVAQSHSVVENMLGGILKAGVDPALVAK 828 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + E + I + D + DE Sbjct: 829 KGSRSKTAEWQDIASEEYAGFIAEAEGVGCVIGGTAWDFANTDR---VPAGSLDLLVVDE 885 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 A ++ R ++ + ++L P+++ Sbjct: 886 AGQF------ALANTIAVAISARNLLLLGDPQQLPQVSQGTHPEPVDE-SALGWLAEGHG 938 Query: 260 GIDSGFHEGIISRYGLDSDVA 280 + + + + D+ Sbjct: 939 ALPPELGYFLEKTWRMHPDLC 959 >gi|294661382|ref|YP_003573258.1| hypothetical protein Aasi_1916 [Candidatus Amoebophilus asiaticus 5a2] gi|227336533|gb|ACP21130.1| hypothetical protein Aasi_1916 [Candidatus Amoebophilus asiaticus 5a2] Length = 575 Score = 44.2 bits (102), Expect = 0.030, Method: Composition-based stats. Identities = 24/229 (10%), Positives = 55/229 (24%), Gaps = 24/229 (10%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 F+QP Q + + ++ SA G GKT A ++ + + P Sbjct: 21 SFTQPTAIQAKAI--PLALQQKDILG----------SAQTGTGKTLAFAIPLINKLLSDP 68 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 + + + E+++ ++ ++ F+ + +Q + S Sbjct: 69 TSMGLILTPT---------RELAQQVATNINQLLFKSSFIKTALLIGGEPYNKQLAQLRS 119 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL---NPNRF 223 I + + DE D+ L Sbjct: 120 NLRIIIGTPGRVIDHLERGSFNPKDIDFLILDETDRMFDMGFSIQLEQIVSQLPTQRQTL 179 Query: 224 WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISR 272 + ++ P + V + I Sbjct: 180 MFSATFPPKVEKLAAKYMQSPERIFMNEFDSMAIVAQNLTQEILEIKEE 228 >gi|257125975|ref|YP_003164089.1| type III restriction protein res subunit [Leptotrichia buccalis C-1013-b] gi|257049914|gb|ACV39098.1| type III restriction protein res subunit [Leptotrichia buccalis C-1013-b] Length = 1090 Score = 44.2 bits (102), Expect = 0.030, Method: Composition-based stats. Identities = 25/185 (13%), Positives = 51/185 (27%), Gaps = 13/185 (7%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P+ Q +E + + K + + G GKT L A + Sbjct: 298 PNSMQKRVLEKLKETRENGNK-------KGLVISATGTGKTYLAAMDIKQFFEINSNNKN 350 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 +E + K + + + + S L + + +K Sbjct: 351 KLFEINEKKSKISNIKFLFIAHREELLENAMNVFSRILKIDKNKFGRIYGGLKEINKSMI 410 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 + F HN + DE ++ S L + +T+ Sbjct: 411 FASIQSLRNCYNEFK--HNF-FDYIIVDEFH---HSMSDSYLKTLSYFQSKFLLGLTATP 464 Query: 231 RRLNG 235 +R++G Sbjct: 465 KRMDG 469 >gi|117619977|ref|YP_858693.1| multidrug transporter membrane component/ATP-binding component [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561384|gb|ABK38332.1| ABC transporter ATP-binding protein YojI [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 552 Score = 44.2 bits (102), Expect = 0.030, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 62/207 (29%), Gaps = 18/207 (8%) Query: 19 LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS-------NVN 71 L+ A+ + P PL S P WQ +E V H +N Sbjct: 289 LLSAQVAFDKIAALNLAAP--DADFPL--PSAPRGWQRIELEQVSFHYQGEGGFAVGPIN 344 Query: 72 NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN--SETQLKNTLWAEVS 129 + + I G G GK+TL M+L + I+ ++ L++ + Sbjct: 345 LTIEKGEQIFIIGGNGSGKSTLA--MLLTGLYQPVAGRILLDGEPVTDRNAYLALFSAIF 402 Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS-MGIDSKHYTITCRTYSEERPDTFVGPH 188 + +H + + W L S + I+ + + + + Sbjct: 403 TDYHLF--QHLLGPEPKDELVAEWLERLQMGSKLTIEDGFIADIDLSQGQRKRVALLLAL 460 Query: 189 NTHGMAVFNDEASGTPDIINKSILGFF 215 + DE + D + I Sbjct: 461 AEQREVMLFDEWAADQDPQFRRIFYQL 487 >gi|126463981|ref|YP_001045094.1| EcoEI R domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|126105792|gb|ABN78322.1| EcoEI R, C-terminal domain protein [Rhodobacter sphaeroides ATCC 17029] Length = 815 Score = 44.2 bits (102), Expect = 0.030, Method: Composition-based stats. Identities = 19/194 (9%), Positives = 52/194 (26%), Gaps = 12/194 (6%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 +P +Q+ + A + + G GKT ++ Sbjct: 161 GSGKEPRYYQINAVNAAIEAIARGD-------RRVLLVMATGTGKTYTAFQIIWRYRQAF 213 Query: 106 PGMSIICIANSETQLKNTL---WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162 PG ++ +A+ + T+ + S ++ L + ++ ++ + Sbjct: 214 PGKRVLFLADRNVLIDQTMVNDFRPFSGKMAKLSTQAKTIERADGSTVDLPLGLDRKRRI 273 Query: 163 GIDSKHYTITCRTYSEERPDT--FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220 + Y + + + F + DE + + + Sbjct: 274 DPSYEIYLGLYQAITGPAEEDKIFREFSRDFFDLIIIDECHRGSAAEDSAWREILDHFSG 333 Query: 221 NRFWIMTSNTRRLN 234 MT+ + Sbjct: 334 AVQIGMTATPKETE 347 >gi|9632517|ref|NP_049511.1| putative large subunit terminase [Enterobacteria phage 933W] gi|9633446|ref|NP_050549.1| hypothetical protein VT2-Sap52 [Enterobacteria phage VT2-Sakai] gi|15800970|ref|NP_286986.1| partial putative terminase large subunit of bacteriophage BP-933W [Escherichia coli O157:H7 EDL933] gi|15830474|ref|NP_309247.1| terminase large subunit [Escherichia coli O157:H7 str. Sakai] gi|20065962|ref|NP_612880.1| hypothetical protein Stx2Ip001 [Stx2 converting phage I] gi|116222005|ref|YP_794060.1| putative terminase large subunit [Stx2-converting phage 86] gi|195935756|ref|ZP_03081138.1| putative terminase large subunit [Escherichia coli O157:H7 str. EC4024] gi|208806515|ref|ZP_03248852.1| large subunit terminase [Escherichia coli O157:H7 str. EC4206] gi|208814205|ref|ZP_03255534.1| large subunit terminase [Escherichia coli O157:H7 str. EC4045] gi|208821209|ref|ZP_03261529.1| large subunit terminase [Escherichia coli O157:H7 str. EC4042] gi|209397398|ref|YP_002271783.1| large subunit terminase [Escherichia coli O157:H7 str. EC4115] gi|254794261|ref|YP_003079098.1| terminase large subunit of bacteriophage BP-933W [Escherichia coli O157:H7 str. TW14359] gi|260844956|ref|YP_003222734.1| putative terminase large subunit [Escherichia coli O103:H2 str. 12009] gi|302393082|ref|YP_003828912.1| terminase, large subunit [Stx2 converting phage II] gi|302861123|ref|YP_003848824.1| terminase, large subunit [Stx1 converting phage] gi|4585428|gb|AAD25456.1|AF125520_51 putative large subunit terminase [Enterobacteria phage 933W] gi|12514329|gb|AAG55597.1|AE005297_7 partial putative terminase large subunit of bacteriophage BP-933W [Escherichia coli O157:H7 str. EDL933] gi|5881642|dbj|BAA84333.1| hypothetical protein [Enterobacteria phage VT2-Sakai] gi|13360680|dbj|BAB34643.1| putative terminase large subunit [Escherichia coli O157:H7 str. Sakai] gi|19911754|dbj|BAB88014.1| hypothetical protein [Stx2 converting phage I] gi|32128179|dbj|BAC77983.1| hypothetical protein [Stx1 converting phage] gi|32128351|dbj|BAC78154.1| hypothetical protein [Stx2 converting phage II] gi|115500815|dbj|BAF34045.1| putative terminase large subunit [Stx2-converting phage 86] gi|208726316|gb|EDZ75917.1| large subunit terminase [Escherichia coli O157:H7 str. EC4206] gi|208735482|gb|EDZ84169.1| large subunit terminase [Escherichia coli O157:H7 str. EC4045] gi|208741332|gb|EDZ89014.1| large subunit terminase [Escherichia coli O157:H7 str. EC4042] gi|209158798|gb|ACI36231.1| large subunit terminase [Escherichia coli O157:H7 str. EC4115] gi|254593661|gb|ACT73022.1| terminase large subunit of bacteriophage BP-933W [Escherichia coli O157:H7 str. TW14359] gi|257760103|dbj|BAI31600.1| putative terminase large subunit [Escherichia coli O103:H2 str. 12009] gi|315274325|gb|ADU03733.1| large subunit terminase [Enterobacteria phage VT2phi_272] Length = 568 Score = 44.2 bits (102), Expect = 0.030, Method: Composition-based stats. Identities = 29/290 (10%), Positives = 64/290 (22%), Gaps = 40/290 (13%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEA 61 PR + E E +M + + + + + L F Q + + Sbjct: 8 PRCDEPSEMTEAEQRLFIMTK--LSNPWWRLNHLYKIQNEKGELVTFRM-RPAQRQLFRS 64 Query: 62 VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121 + K I R +G +T +L P + +A + Sbjct: 65 MHN--------------KNIILKARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQAAS 110 Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 +++ LP + + ++ Sbjct: 111 EIFRTKIAVPFDHLPDWLRASFTIVERRSGASG-----GYILFGHGSSIQVATSFRSGTV 165 Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241 + + P + G ++ S + G FY++ Sbjct: 166 QRLHISEHGKI-------CAKYPAKAKELRTGTLNAVSDECIIFDESTAEGVGGDFYEMS 218 Query: 242 NIPLE-----------DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280 N E D+K + + E + Sbjct: 219 NRAQEITASGLLLTAQDYKFHFYAWWQDPKYSARVPESGLKLSREKMTYF 268 >gi|300871094|ref|YP_003785966.1| putative phage terminase large subunit [Brachyspira pilosicoli 95/1000] gi|300688794|gb|ADK31465.1| putative phage terminase, large subunit [Brachyspira pilosicoli 95/1000] Length = 590 Score = 44.2 bits (102), Expect = 0.030, Method: Composition-based stats. Identities = 26/199 (13%), Positives = 50/199 (25%), Gaps = 24/199 (12%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS-- 109 W+ + ++ N K + R GKTT + + + Sbjct: 75 ESWEQFIIASI--FGWRRKENKLRRYKKAYVQVSRKNGKTTFASGIGNYCFFCDSPAEAG 132 Query: 110 --IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 I IA + Q K W+E + + + ++ ++ SK Sbjct: 133 VEIYYIATKKDQAK-IAWSESERQIRKAK-----ALNKEAITYKQTSTITKKKDTASKSK 186 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIM 226 T P V DE PD + + +I+ Sbjct: 187 PLGQDSNTEDGLNPH-----------LVIVDEYHAHPDNELLNVLESGMGARRQPLTFII 235 Query: 227 TSNTRRLNGWFYDIFNIPL 245 T+ + + Sbjct: 236 TTAGFDKTSVCFSEYEYAK 254 >gi|294795014|ref|ZP_06760149.1| phage terminase large subunit (GpA) [Veillonella sp. 3_1_44] gi|294454376|gb|EFG22750.1| phage terminase large subunit (GpA) [Veillonella sp. 3_1_44] Length = 634 Score = 44.2 bits (102), Expect = 0.030, Method: Composition-based stats. Identities = 24/223 (10%), Positives = 57/223 (25%), Gaps = 26/223 (11%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 +Q + M+A P I + + + +GK+ + ++ P +++ Sbjct: 51 PYQKDIMDAFT----------QPGINRVVVKSASQVGKSDIMNNVLGRYAHLDP-CAVMM 99 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 I + ++ + +S + ++ S + + I Sbjct: 100 IQPTIELAQDYSKSRISPMIRDTKVLSQVFYETKSEDGTKTRDGKNTILSKLFPGGRLIM 159 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD------IINKSILGFFTELNPNRFWIM 226 C ++ G + + DE PD T + Sbjct: 160 C------GANSPAGLASRPVRVLLADEVDRFPDSAGTEGDPVDLAAKRMTTFWNRV-MGL 212 Query: 227 TSNTRRLNGWF--YDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267 S + E+W+ + I E Sbjct: 213 FSTPTNEGSSRIDVEYQTGTQEEWQHECPNCGEYHLIRHTEME 255 >gi|227548401|ref|ZP_03978450.1| possible helicase [Corynebacterium lipophiloflavum DSM 44291] gi|227079445|gb|EEI17408.1| possible helicase [Corynebacterium lipophiloflavum DSM 44291] Length = 943 Score = 44.2 bits (102), Expect = 0.030, Method: Composition-based stats. Identities = 51/319 (15%), Positives = 83/319 (26%), Gaps = 60/319 (18%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P+ Q E +E + + + I + G GKT L+A + + Sbjct: 178 PNLMQTEALENLQRVIDAGE-------RRAIIISATGTGKTILSALAV----RQIKPRRV 226 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + +A+ Q+ N E + L+ P F ++ Sbjct: 227 LFVAH-REQILNKAAEEFQRVLACPPTDIGF-----------------IVGQRKEANQRL 268 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 + S R DT V DE +S + +T+ Sbjct: 269 VFATIQSLGRGDTLSEISPKQFDLVIVDE---VHRSGAESYQKVLNHFRADFTLGLTATP 325 Query: 231 RRLNG-----------WFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279 R +G + LE+ D V +S F I L Sbjct: 326 ERTDGFNVFELFDYNVPYEIRLEDALENHMLVPFDYYGVSDYESAFGSVISDNSTLQQLA 385 Query: 280 ARIEI--------LGQFPQQEVNNFIPHNYIEEAM---SREAIDDLYAPLIMGCDIAGEG 328 A + F + + E A PL IA G Sbjct: 386 APERVHHLAKIIQDYSFARGSKGLIFCSSNAEAAALSKGLNTESVHGRPLRT---IALSG 442 Query: 329 GDKTVVVFRRGNIIEHIFD 347 GD + R N +E + Sbjct: 443 GDS--IETRE-NTVEKLAQ 458 >gi|307150235|ref|YP_003885619.1| DEAD/DEAH box helicase domain-containing protein [Cyanothece sp. PCC 7822] gi|306980463|gb|ADN12344.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 7822] Length = 1004 Score = 44.2 bits (102), Expect = 0.030, Method: Composition-based stats. Identities = 31/209 (14%), Positives = 54/209 (25%), Gaps = 19/209 (9%) Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 + + A G GKT L ++ R G + + Sbjct: 21 DQFQKKAITALEQGKSVVVCAPTGSGKT-LVGEYAIYRALAR-GKRVFYTTPLKALSNQK 78 Query: 124 L--WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 + E L HR + + + + ++ + + E P Sbjct: 79 CRDFQEKFGQTPFLAHRVDVGLITGDIVINPDAPIIVMTTEIFRN---------MLYETP 129 Query: 182 DTFVGPHNTHGMAVFNDEASGTPDI-----INKSILGFFTELNPNRFWIMTSNTRRLNGW 236 VG + V DE D +SI+ + N L W Sbjct: 130 IGEVGTSLENVETVVLDECHYISDSGRGTVWEESIIYCPPTIQLVALSATIGNPEELTDW 189 Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265 E+ + + T E I+S F Sbjct: 190 INK-VRQKRENKQFLEQKISTCELINSDF 217 >gi|156395541|ref|XP_001637169.1| predicted protein [Nematostella vectensis] gi|156224279|gb|EDO45106.1| predicted protein [Nematostella vectensis] Length = 448 Score = 44.2 bits (102), Expect = 0.030, Method: Composition-based stats. Identities = 23/143 (16%), Positives = 41/143 (28%), Gaps = 7/143 (4%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE----VSKWLSMLPHRHWFE 142 G GKT +L + P +I A S + + M+ + Sbjct: 44 GTGKTVTLVEAILQVFHRVPSSRVIACAPSNSAADLMAVRLHRSGFIQEGDMIRLNAFQR 103 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 +Q + + + + + + TC T + H TH VF DEA Sbjct: 104 VQEIPESINKYCVDTDSLQLAAHYRIIVCTCSTAGQLFSLGLKPGHFTH---VFVDEAGQ 160 Query: 203 TPDIINKSILGFFTELNPNRFWI 225 + +G + Sbjct: 161 ATEPECLIPIGLAAGEDGQIILA 183 >gi|145301186|ref|YP_001144027.1| multidrug transporter membrane component/ATP-binding component [Aeromonas salmonicida subsp. salmonicida A449] gi|142853958|gb|ABO92279.1| ABC-type hydroxamate-type ferric siderophore transporter, ATP-binding protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 548 Score = 44.2 bits (102), Expect = 0.030, Method: Composition-based stats. Identities = 27/194 (13%), Positives = 54/194 (27%), Gaps = 14/194 (7%) Query: 40 IKGKPLEHFSQPHRWQLEFMEAVDVHCHS-------NVNNSNPTIFKCAISAGRGIGKTT 92 P WQ +E V H +N + + I G G GK+T Sbjct: 306 EPDPDFPLPPAPRAWQRIQLEQVSFHYQGEGGFAVGPINLTIEKGEQVFIIGGNGSGKST 365 Query: 93 LNAWMMLWLISTRPGMSIICIAN--SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150 L M+L + I+ ++ L++ + + +H + + Sbjct: 366 LA--MLLTGLYQPVSGRILLDGEPVTDRNAYLALFSAIFTDYHLF--QHLLGPEPKAELI 421 Query: 151 SGWYAELLEQS-MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209 + W L S + I+ + + + + + DE + D + Sbjct: 422 AEWLDRLQMGSKLAIEDNFIADIDLSQGQRKRVALLLALAEQREVMLFDEWAADQDPQFR 481 Query: 210 SILGFFTELNPNRF 223 I Sbjct: 482 RIFYQLLLPRLKAM 495 >gi|261212096|ref|ZP_05926382.1| type III restriction enzyme res subunit [Vibrio sp. RC341] gi|260838704|gb|EEX65355.1| type III restriction enzyme res subunit [Vibrio sp. RC341] Length = 1046 Score = 44.2 bits (102), Expect = 0.031, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 58/196 (29%), Gaps = 29/196 (14%) Query: 41 KGKPLEHFS-QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99 + P F P Q + +E + V S F+ + A G GKT ++A+ Sbjct: 309 EASPTYFFDISPFPHQSDILEQLA------VERSVHQRFRNLVVAATGTGKTLISAFDFA 362 Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159 I +P + + +A+ E E+ K L G E Sbjct: 363 RFIKAKPQANFLFVAHRE---------EILKQARSAYRGVLRNGTFGELWVGGHTPE--- 410 Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219 + + + + + + DE +++ + Sbjct: 411 -------HYRQLFVSIQTMNNQLDQLNLTADYYDYIVIDEVHHIAATSYRAL---LEHFS 460 Query: 220 PNRFWIMTSNTRRLNG 235 PN +T+ R +G Sbjct: 461 PNILLGLTATPERHDG 476 >gi|229826247|ref|ZP_04452316.1| hypothetical protein GCWU000182_01619 [Abiotrophia defectiva ATCC 49176] gi|229789117|gb|EEP25231.1| hypothetical protein GCWU000182_01619 [Abiotrophia defectiva ATCC 49176] Length = 751 Score = 44.2 bits (102), Expect = 0.031, Method: Composition-based stats. Identities = 30/257 (11%), Positives = 69/257 (26%), Gaps = 17/257 (6%) Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE---TQL 120 F + G GKT + +L + II IA+ + Q Sbjct: 29 DAMAKLNLIDKEDSFSTLVVLPTGGGKTYTASTWLLKNAVDKK-KKIIWIAHRQMLLDQA 87 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 + + +PH F SG + + ++ + Sbjct: 88 AESFQK--FAYAEAMPHISEFTY----RIVSGSSSHDRSIDISEKDNILILSKDSIGRNM 141 Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI-MTSNTRRLNGWFYD 239 + + DEA + I+ + E PN + +T+ R Sbjct: 142 SVLDKWLKGEKEIYLVIDEAHHATAKTYRKIIKYIEERVPNLKLLGLTATPFRTAKEEEG 201 Query: 240 IFNIPLEDWKRYQIDTRTVEGIDSGFH--EGIISRYGLDSDVARIEILGQFPQQEVNNFI 297 + +D + + +I+ L + + ++ ++ + Sbjct: 202 LLAKIFKDGVDISGSAVKGNLGITYQIGLKELINARILSTPIF----ECKYTDEDFGVNL 257 Query: 298 PHNYIEEAMSREAIDDL 314 + +E + + D Sbjct: 258 GLDALESIQRLDVLPDE 274 >gi|225555208|gb|EEH03501.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces capsulatus G186AR] Length = 2017 Score = 44.2 bits (102), Expect = 0.031, Method: Composition-based stats. Identities = 21/155 (13%), Positives = 36/155 (23%), Gaps = 24/155 (15%) Query: 58 FMEAVDVHCHSNVNNSNPTIF--------KCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +E + N IF + + G GKT M W +PG Sbjct: 1133 ILENIYAQRFQFFNPMQTQIFHTLYHTPANVLLGSPTGSGKTVAAELAMWWAFREKPGSK 1192 Query: 110 IICIANSETQLKNTLWAEVSKWLSML---PHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 ++ IA + ++ V W L E+ + + + + Sbjct: 1193 VVYIAPMKALVRER----VQDWRRRLTAPMDLKLVELTGDNTPDTRTIRDADIIITTPEK 1248 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 V DE Sbjct: 1249 WDGISRSWQTRGYV---------RQVSLVIIDEIH 1274 >gi|119718031|ref|YP_924996.1| type III restriction enzyme, res subunit [Nocardioides sp. JS614] gi|119538692|gb|ABL83309.1| type III restriction enzyme, res subunit [Nocardioides sp. JS614] Length = 1033 Score = 44.2 bits (102), Expect = 0.031, Method: Composition-based stats. Identities = 36/270 (13%), Positives = 74/270 (27%), Gaps = 34/270 (12%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS- 109 P+ +Q + ++ + +V + + + A G GKT + A L PG Sbjct: 313 PYAYQQKMLDDL------DVERTIRGRHRNLVVAATGTGKTVVAALDYRRLAGHTPGRRP 366 Query: 110 -IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 ++ +A+ L+ + + G + E + Sbjct: 367 TLLFVAHRAEILEQS------------------RRTYREVLADGSFGESWYGGTRPERGE 408 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 + V DE + I+ T P +T+ Sbjct: 409 HVFASV--QSLHSYGIHQIPPDAFDVVVIDEFHHAEAPTYRRIIEHLT---PRELLGLTA 463 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 R +G F + D + + + + L + R G++ Sbjct: 464 TPERTDGTDVRDFFDGRIATELRLWDALESDLLCPFHYFAVADNTDLSAITWRR---GRY 520 Query: 289 PQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318 E+ N N A+ ++D L Sbjct: 521 DDAELENLYTGNDARAAIVLRELNDKVGNL 550 >gi|116620801|ref|YP_822957.1| superfamily I DNA/RNA helicase [Candidatus Solibacter usitatus Ellin6076] gi|116223963|gb|ABJ82672.1| Superfamily I DNA and RNA helicases and helicase subunits-like protein [Candidatus Solibacter usitatus Ellin6076] Length = 1586 Score = 44.2 bits (102), Expect = 0.031, Method: Composition-based stats. Identities = 22/154 (14%), Positives = 47/154 (30%), Gaps = 7/154 (4%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA-WMMLWLISTRPGMSIICIAN 115 E ++ ++ P + + G GKTT A ++L L++ ++ +A Sbjct: 1093 ERFRSLGHDEKYDMKAGLPENIEF-VFGPPGTGKTTHLAERVLLPLMNGAEPARVLVLAP 1151 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHW---FEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 + + + + ++ W F S + S+ +T Sbjct: 1152 TNKAADVLIARILDAMGTDTSNKEWLVRFGTSSDERIERAGVWRDRSFDIFGLSRSVVVT 1211 Query: 173 --CRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 R + + + DEAS P Sbjct: 1212 TVARFAYDGFTANEGRLYEIDWDVIVMDEASMIP 1245 >gi|298675127|ref|YP_003726877.1| DEAD/DEAH box helicase domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298288115|gb|ADI74081.1| DEAD/DEAH box helicase domain protein [Methanohalobium evestigatum Z-7303] Length = 1607 Score = 44.2 bits (102), Expect = 0.031, Method: Composition-based stats. Identities = 33/289 (11%), Positives = 65/289 (22%), Gaps = 38/289 (13%) Query: 60 EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST-------RPGMSIIC 112 + H + N ++ G G GKT + +L + PG+ + Sbjct: 87 RPLYKHQEKAIRNIINKNKNAVVATGTGSGKTEIFMITILNYLFKQQENSELGPGVRALL 146 Query: 113 IANSETQLKNTLWA------------------EVSKWLSMLPHRHWFEMQSLSLHPSGWY 154 + + L E + ++ L Sbjct: 147 LYPMNALANDQLKRMRTLLKNCPEITFGRYTGETEENYRSARDKYKQMYHEEPLDNEFIS 206 Query: 155 AELLEQSMGI--DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212 + ++++ + + + F G + + DEA I Sbjct: 207 RDKMKETPPHILLTNYAMLEYLMLRPSDHIFFDGSYADDWKFIVLDEAHTYDGAKGIEIS 266 Query: 213 GFFTELNPN--------RFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264 L I TS T + + D V Sbjct: 267 MLIRRLKDRVVGNIPGEIKCIATSATLGNSDSDFKDVADFSNKLFGEHFDENDV-IGPER 325 Query: 265 FHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 E +G S + Q + + IE ++ D Sbjct: 326 KIENFDGSWGKPSYLLYQSWQDIINQNDTDKI--TALIESGVNHNVPVD 372 >gi|109638534|ref|YP_656697.1| ORF42 [Ranid herpesvirus 1] gi|109138302|gb|ABG25767.1| ORF42 [Ranid herpesvirus 1] Length = 742 Score = 44.2 bits (102), Expect = 0.031, Method: Composition-based stats. Identities = 16/155 (10%), Positives = 43/155 (27%), Gaps = 9/155 (5%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GK+T+ +++ + + ++ A+ L+ + + + + WF Sbjct: 179 PRRCGKSTML-EIIMAGAALFLEIDVLIQAHRNPT-CLALYNRMEQRVGAMQSAPWF--- 233 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 ++ +S + + + V DEA+ Sbjct: 234 --PKDFKITTVRGDLENHEYESAPHAREGKAVFHFLASGANTARGQNPDLVIVDEAAFIC 291 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239 S++ + T++ W Sbjct: 292 MPALLSLIPLMAIDGTKQIH--TTSPVDAGAWISR 324 >gi|86609851|ref|YP_478613.1| helicase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558393|gb|ABD03350.1| putative helicase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 802 Score = 44.2 bits (102), Expect = 0.031, Method: Composition-based stats. Identities = 38/278 (13%), Positives = 73/278 (26%), Gaps = 24/278 (8%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 + A G GKT L ++ ++ G + L N + + + Sbjct: 40 VVVCAPTGSGKT-LIGEYAIYRALSQ-GKRVFYTTP-LKALSNQKFRDFGQQFGPERVGL 96 Query: 140 WF-EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT-----HGM 193 ++ P + ++M + R ER D Sbjct: 97 LTGDISINRDAPVLVMTTEIFRNMLYGTPISLAVQRYAYGERDDGTEFSEGEVDPLRDVQ 156 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFW-IMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252 AV DE D ++ P I S T + D N Sbjct: 157 AVILDECHYMNDQQRGTVWEEAIIYCPPTIQLIALSATLANSDQLTDWMNQVHGPTHLID 216 Query: 253 IDTRTVE----GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI----EE 304 + R V + ++ + V + + P ++ I E Sbjct: 217 SNHRPVPLQFHFANRKGLFPLLEQTESGQWVRNRRLKSKRPNSHEPSWAGVPDIAQVLEN 276 Query: 305 AMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNII 342 R+ + A + + +G D V R +++ Sbjct: 277 LRQRDMLP---AIYFI---FSRKGCDMAVASVRDLDLV 308 >gi|156603923|ref|YP_001429870.1| putative terminase large subunit [Staphylococcus phage tp310-1] gi|156604053|ref|YP_001429998.1| terminase large subunit [Staphylococcus phage tp310-3] gi|154818009|gb|ABS87437.1| putative terminase large subunit [Staphylococcus phage tp310-1] gi|154818139|gb|ABS87565.1| terminase large subunit [Staphylococcus phage tp310-3] Length = 564 Score = 44.2 bits (102), Expect = 0.032, Method: Composition-based stats. Identities = 27/283 (9%), Positives = 76/283 (26%), Gaps = 55/283 (19%) Query: 82 ISAGRGIGKTTLNAWM----MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 IS R GK+ + + M +L+ + I +++ Q + + S+ ++++ Sbjct: 96 ISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQTI-FKMASQQVNLMRS 154 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + F + + + + + + Sbjct: 155 KSKFIREKTDVR---------KTDIEDVLSSSVFAPLS------NNPDAVDGKDPTVAIL 199 Query: 198 DEASGTPDIINKSILGF-FTELNPNRFWIMTSNTRRLNGWFYDIF--------------- 241 DE + PD S T ++++ LN Y + Sbjct: 200 DELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEEVRADN 259 Query: 242 -----------NIPLEDWKRYQID----TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 ++ K + ++ + I ++ Sbjct: 260 YFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADIQDELEKGTSYHKILIK 319 Query: 287 QFP---QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAG 326 F Q ++ + + E+ ++ + + +G D++ Sbjct: 320 NFNLWQAQREDSLLDISDWEQVITPMPNIN-GKDVYIGVDLSR 361 >gi|239507398|ref|YP_002939709.1| terminase large subunit [Staphylococcus phage phiPVL-CN125] gi|238684023|gb|ACR54226.1| terminase large subunit [Staphylococcus phage phiPVL-CN125] Length = 564 Score = 44.2 bits (102), Expect = 0.032, Method: Composition-based stats. Identities = 27/283 (9%), Positives = 76/283 (26%), Gaps = 55/283 (19%) Query: 82 ISAGRGIGKTTLNAWM----MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 IS R GK+ + + M +L+ + I +++ Q + + S+ ++++ Sbjct: 96 ISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQTI-FKMASQQVNLMRS 154 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + F + + + + + + Sbjct: 155 KSKFIREKTDVR---------KTDIEDVLSSSVFAPLS------NNPDAVDGKDPTVAIL 199 Query: 198 DEASGTPDIINKSILGF-FTELNPNRFWIMTSNTRRLNGWFYDIF--------------- 241 DE + PD S T ++++ LN Y + Sbjct: 200 DELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEGVRADN 259 Query: 242 -----------NIPLEDWKRYQID----TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 ++ K + ++ + I ++ Sbjct: 260 YFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADIQDELEKGTSYHKILIK 319 Query: 287 QFP---QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAG 326 F Q ++ + + E+ ++ + + +G D++ Sbjct: 320 NFNLWQAQREDSLLDISDWEQVITPMPNIN-GKDVYIGVDLSR 361 >gi|121714645|ref|XP_001274933.1| DEAD/DEAH box helicase, putative [Aspergillus clavatus NRRL 1] gi|119403087|gb|EAW13507.1| DEAD/DEAH box helicase, putative [Aspergillus clavatus NRRL 1] Length = 2007 Score = 44.2 bits (102), Expect = 0.032, Method: Composition-based stats. Identities = 19/155 (12%), Positives = 39/155 (25%), Gaps = 18/155 (11%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIF--------KCAISAGRGIGKTTLNAWMMLWLISTRP 106 Q +E + N IF + + G GKT M W +P Sbjct: 1127 QNPILEELYGQRFQFFNPMQTQIFHMLYHTSANVLLGSPTGSGKTVAAELAMWWAFREKP 1186 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 G ++ IA + ++ + + + + E+ + + + + Sbjct: 1187 GSKVVYIAPMKALVRERVQDWGKRLTGPMGLK-LVELTGDNTPDTRTIRDADIIITTPEK 1245 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + V DE Sbjct: 1246 WDGISRSWQTRDYV---------RKVSLVIIDEIH 1271 >gi|9635715|ref|NP_061628.1| phi PVL ORF 2 homologue [Staphylococcus prophage phiPV83] gi|21283637|ref|NP_646725.1| hypothetical protein MW1908 [Staphylococcus aureus subsp. aureus MW2] gi|29028696|ref|NP_803384.1| terminase-large subunit [Staphylococcus phage phi13] gi|49486784|ref|YP_044005.1| putative terminase-large subunit [Staphylococcus aureus subsp. aureus MSSA476] gi|88195871|ref|YP_500681.1| phage terminase large subunit [Staphylococcus aureus subsp. aureus NCTC 8325] gi|119443690|ref|YP_918928.1| phage terminase-large subunit [Staphylococcus phage phiPVL108] gi|257425574|ref|ZP_05601998.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus 55/2053] gi|257436471|ref|ZP_05612515.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus M876] gi|258443264|ref|ZP_05691609.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|282914770|ref|ZP_06322553.1| terminase large subunit [Staphylococcus aureus subsp. aureus M899] gi|282924546|ref|ZP_06332214.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus C101] gi|293503332|ref|ZP_06667179.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus 58-424] gi|293530883|ref|ZP_06671565.1| terminase large subunit [Staphylococcus aureus subsp. aureus M1015] gi|297208777|ref|ZP_06925203.1| bacteriophage terminase large subunit [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912942|ref|ZP_07130380.1| bacteriophage terminase large subunit [Staphylococcus aureus subsp. aureus TCH70] gi|8918785|dbj|BAA97845.1| phi PVL ORF 2 homologue [Staphylococcus prophage phiPV83] gi|18920620|gb|AAL82359.1| terminase-large subunit [Staphylococcus phage phi13] gi|21205078|dbj|BAB95773.1| hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49245227|emb|CAG43697.1| putative terminase-large subunit [Staphylococcus aureus subsp. aureus MSSA476] gi|87203429|gb|ABD31239.1| phage terminase, large subunit, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|119225816|dbj|BAF41187.1| phage terminase-large subunit [Staphylococcus phage phiPVL108] gi|257271268|gb|EEV03414.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus 55/2053] gi|257283822|gb|EEV13945.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus M876] gi|257851553|gb|EEV75490.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|282167139|gb|ADA81155.1| Terminase large subunit, phage associated [Staphylococcus phage SAP090B] gi|282313381|gb|EFB43776.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus C101] gi|282321332|gb|EFB51660.1| terminase large subunit [Staphylococcus aureus subsp. aureus M899] gi|290920151|gb|EFD97217.1| terminase large subunit [Staphylococcus aureus subsp. aureus M1015] gi|291094998|gb|EFE25263.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus 58-424] gi|296886584|gb|EFH25491.1| bacteriophage terminase large subunit [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300885720|gb|EFK80927.1| bacteriophage terminase large subunit [Staphylococcus aureus subsp. aureus TCH70] gi|320139651|gb|EFW31520.1| hypothetical protein HMPREF9528_02025 [Staphylococcus aureus subsp. aureus MRSA131] gi|329728606|gb|EGG65036.1| putative phage terminase, large subunit [Staphylococcus aureus subsp. aureus 21189] Length = 564 Score = 44.2 bits (102), Expect = 0.032, Method: Composition-based stats. Identities = 27/283 (9%), Positives = 76/283 (26%), Gaps = 55/283 (19%) Query: 82 ISAGRGIGKTTLNAWM----MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 IS R GK+ + + M +L+ + I +++ Q + + S+ ++++ Sbjct: 96 ISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQTI-FKMASQQVNLMRS 154 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + F + + + + + + Sbjct: 155 KSKFIREKTDVR---------KTDIEDVLSSSVFAPLS------NNPDAVDGKDPTVAIL 199 Query: 198 DEASGTPDIINKSILGF-FTELNPNRFWIMTSNTRRLNGWFYDIF--------------- 241 DE + PD S T ++++ LN Y + Sbjct: 200 DELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEEVRADN 259 Query: 242 -----------NIPLEDWKRYQID----TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 ++ K + ++ + I ++ Sbjct: 260 YFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADIQDELEKGTSYHKILIK 319 Query: 287 QFP---QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAG 326 F Q ++ + + E+ ++ + + +G D++ Sbjct: 320 NFNLWQAQREDSLLDISDWEQVITPMPNIN-GKDVYIGVDLSR 361 >gi|301607561|ref|XP_002933376.1| PREDICTED: probable ATP-dependent RNA helicase DDX60-like [Xenopus (Silurana) tropicalis] Length = 1780 Score = 44.2 bits (102), Expect = 0.032, Method: Composition-based stats. Identities = 26/238 (10%), Positives = 66/238 (27%), Gaps = 27/238 (11%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P WQ + ++ VD + + I A GKT + + M ++S + Sbjct: 871 PDTWQRKLLDVVDNNESA------------VIVAPTSSGKTYASYYCMQKVLSQGHEGVV 918 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + ++ ++ + + ++++ LP+ + + + ++ Sbjct: 919 VYVSPTKALVNQVVTTVMNQFNKNLPNGVALCGVFTRDYRTDALNSQILVTV-----PQC 973 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEAS----GTPDIINKSILGFFTELNPNRFWIM 226 + S R + V DE + + +L Sbjct: 974 LEILLLSPHRQEWAKRIK-----YVIFDEIHCLGGEIGAEVWEHLLVMIRCP-FLALSAT 1027 Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 SN L W + + K + + + + Y + + Sbjct: 1028 ISNPEHLTEWLQSVKFYWQKRDKLIEENWTEKGAKAKAYKKKEKMSYRVHLVLYNKRY 1085 >gi|282926109|ref|ZP_06333754.1| phage terminase, large subunit [Staphylococcus aureus A9765] gi|282592354|gb|EFB97370.1| phage terminase, large subunit [Staphylococcus aureus A9765] Length = 564 Score = 44.2 bits (102), Expect = 0.032, Method: Composition-based stats. Identities = 27/283 (9%), Positives = 76/283 (26%), Gaps = 55/283 (19%) Query: 82 ISAGRGIGKTTLNAWM----MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 IS R GK+ + + M +L+ + I +++ Q + + S+ ++++ Sbjct: 96 ISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQTI-FKMASQQVNLMRS 154 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + F + + + + + + Sbjct: 155 KSKFIREKTDVR---------KTDIEDVLSSSVFAPLS------NNPDAVDGKDPTVAIL 199 Query: 198 DEASGTPDIINKSILGF-FTELNPNRFWIMTSNTRRLNGWFYDIF--------------- 241 DE + PD S T ++++ LN Y + Sbjct: 200 DELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEEVRADN 259 Query: 242 -----------NIPLEDWKRYQID----TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 ++ K + ++ + I ++ Sbjct: 260 YFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADIQDELEKGTSYHKILIK 319 Query: 287 QFP---QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAG 326 F Q ++ + + E+ ++ + + +G D++ Sbjct: 320 NFNLWQAQREDSLLDISDWEQVITPMPNIN-GKDVYIGVDLSR 361 >gi|9635167|ref|NP_058441.1| hypothetical protein PVL_02 [Staphylococcus phage PVL] gi|3341909|dbj|BAA31875.1| unnamed protein product [Staphylococcus phage PVL] Length = 564 Score = 44.2 bits (102), Expect = 0.032, Method: Composition-based stats. Identities = 27/283 (9%), Positives = 76/283 (26%), Gaps = 55/283 (19%) Query: 82 ISAGRGIGKTTLNAWM----MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 IS R GK+ + + M +L+ + I +++ Q + + S+ ++++ Sbjct: 96 ISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQTI-FKMASQQVNLMRS 154 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + F + + + + + + Sbjct: 155 KSKFIREKTDVR---------KTDIEDVLSSSVFAPLS------NNPDAVDGKDPTVAIL 199 Query: 198 DEASGTPDIINKSILGF-FTELNPNRFWIMTSNTRRLNGWFYDIF--------------- 241 DE + PD S T ++++ LN Y + Sbjct: 200 DELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEEVRADN 259 Query: 242 -----------NIPLEDWKRYQID----TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 ++ K + ++ + I ++ Sbjct: 260 YFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADIQDELEKGTSYHKILIK 319 Query: 287 QFP---QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAG 326 F Q ++ + + E+ ++ + + +G D++ Sbjct: 320 NFNLWQAQREDSLLDISDWEQVITPMPNIN-GKDVYIGVDLSR 361 >gi|213402789|ref|XP_002172167.1| antiviral helicase SLH1 [Schizosaccharomyces japonicus yFS275] gi|212000214|gb|EEB05874.1| antiviral helicase SLH1 [Schizosaccharomyces japonicus yFS275] Length = 1949 Score = 44.2 bits (102), Expect = 0.033, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 41/151 (27%), Gaps = 16/151 (10%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIF----KCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 E ++ + T++ I A G GKT W PG ++ Sbjct: 1130 EEICAKRFSFFNAVQSQFFHTVYHTPTNVFIGAPTGSGKTMAAELATWWAFREHPGSKVV 1189 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHR-HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 IA + +K L W + L H ++ + + + + Sbjct: 1190 YIAPMKALVKERL----KDWGARLVEPMHINMIELTGDTSPDSKTIMGADIIITTPEKWD 1245 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 R + + + V DE Sbjct: 1246 GITRNWRT-------RKYVQNVSLVIIDEIH 1269 >gi|84995488|ref|XP_952466.1| hypothetical protein [Theileria annulata strain Ankara] gi|65302627|emb|CAI74734.1| hypothetical protein, conserved [Theileria annulata] Length = 927 Score = 44.2 bits (102), Expect = 0.033, Method: Composition-based stats. Identities = 26/227 (11%), Positives = 67/227 (29%), Gaps = 18/227 (7%) Query: 69 NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128 N+ I + RG GK+ + L +I+ +A + + L+ + Sbjct: 265 NIILEESDRKIVTILSDRGRGKSATI-GLFLSSALQLDFRNILIVAPNVENVST-LFDFL 322 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188 + L L + Y +L + + + P+ Sbjct: 323 QRGLKCLGIDEYSGYTITRTEGYPSYLKLNRR------NSGVKFMSSTEIKNPE--EFIK 374 Query: 189 NTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW 248 + +EA+ P + + + ++ S+T ++ L Sbjct: 375 MFSWDILIIEEAASIPLPVVE----TLSSKG----IVIISSTTGGYEGTGRSISLKLIQK 426 Query: 249 KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN 295 + + + T+ I ++S + + L F + +++ Sbjct: 427 FKKTLSSDTLSEITLKQPIRYARNDPIESWLNTLLCLNTFKDEGLDS 473 >gi|258578215|ref|XP_002543289.1| potential translation-regulating helicase [Uncinocarpus reesii 1704] gi|237903555|gb|EEP77956.1| potential translation-regulating helicase [Uncinocarpus reesii 1704] Length = 1899 Score = 44.2 bits (102), Expect = 0.033, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 29/125 (23%), Gaps = 14/125 (11%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + G GKT M W +PG I+ IA + ++ V W L Sbjct: 1119 NVLLGSPTGSGKTVAAELAMWWAFREKPGSKIVYIAPMKALVRER----VQDWRRRLAIP 1174 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN--THGMAVF 196 ++ L I + V Sbjct: 1175 LGLKLVEL--------TGDNTPDTRTIRNADMIITTPEKWDGISRSWQTRGYVRQVSLVI 1226 Query: 197 NDEAS 201 DE Sbjct: 1227 IDEIH 1231 >gi|86160286|ref|YP_467071.1| type III restriction enzyme, res subunit [Anaeromyxobacter dehalogenans 2CP-C] gi|85776797|gb|ABC83634.1| type III restriction enzyme, res subunit [Anaeromyxobacter dehalogenans 2CP-C] Length = 1033 Score = 44.2 bits (102), Expect = 0.033, Method: Composition-based stats. Identities = 34/213 (15%), Positives = 63/213 (29%), Gaps = 33/213 (15%) Query: 43 KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102 P +P+ +Q +E + V +K + A G GKT + A+ + Sbjct: 306 TPFFFDLRPYEYQRAILEKL------RVEREEHGRWKNLVVAATGTGKTMIAAFDYAAQV 359 Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162 ++ +A+ E L+ L A + ++L + E+ P + Sbjct: 360 KDGVRPRLLFVAHREEILEQALHA----FRNVLRDHSFGELLKGGSTPGSYEH------- 408 Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222 + S +R D + V DE +L P Sbjct: 409 --------LFATIQSLDRKDLPAALGRDYWHTVIVDEFHHAAAKTYGRLLEAVA---PKI 457 Query: 223 FWIMTSNTRRLN-----GWFYDIFNIPLEDWKR 250 +T+ R + GWF + W Sbjct: 458 LLGLTATPERADGLDVLGWFDHHVAADIRLWHA 490 >gi|227513235|ref|ZP_03943284.1| terminase large subunit [Lactobacillus buchneri ATCC 11577] gi|227083616|gb|EEI18928.1| terminase large subunit [Lactobacillus buchneri ATCC 11577] Length = 452 Score = 44.2 bits (102), Expect = 0.033, Method: Composition-based stats. Identities = 31/271 (11%), Positives = 77/271 (28%), Gaps = 30/271 (11%) Query: 80 CAISAGRGIGKTTLNAWMMLWLI----STRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 GRG K++ + +L ++ +++CI + L ++++ ++ + L Sbjct: 30 IIAKGGRGSFKSSTISLKLLTMLKKQAQLGHKANVVCIRENTVNLCDSVYGQICWAIDKL 89 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 F + + I S Y ++P+ + +A+ Sbjct: 90 NMTDEFRYSVSPMRIT-----------HISSGSAFYF---YGGDKPEKLKSNTIQNVIAL 135 Query: 196 FNDEAS-GTPDIINKSILGFFTELNPN----RFWIMTSNTRR-LNGWFYDIFNIPLEDWK 249 + +EA+ + F + N R W + + ++ + Sbjct: 136 WYEEAANFKGAEVFDQTNPTFIRQKSPWVNDVKVFYSYNPPRNPYDWINEWIALQEQNPQ 195 Query: 250 RYQIDTR----TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA 305 + + + I + D + + LG+ N Sbjct: 196 CFIDTSTYLDDELGITKDQQLALIETYKKNDLEYYKWLYLGK-IIGLGTNVYNMELF-HP 253 Query: 306 MSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 +++ DD L D T + Sbjct: 254 LTKLFDDDPLVNLYFSIDAGHINSATTCLAI 284 >gi|24371966|ref|NP_716008.1| helicase [Shewanella oneidensis MR-1] gi|24345815|gb|AAN53453.1|AE015485_2 helicase [Shewanella oneidensis MR-1] Length = 982 Score = 44.2 bits (102), Expect = 0.034, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 53/181 (29%), Gaps = 28/181 (15%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q E +E + V S FK I A G GKT ++A+ P + + +A Sbjct: 251 QREILEQLA------VERSVHGRFKNLIVAATGTGKTIISAFDFARFYKQHPEANFLFVA 304 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 + + L+ L A L + + +A + ++ +D+ Sbjct: 305 HRQEILQQALGAY-RGVLKNNQFGELWVAEHTPNSYKHLFASIQSLNLQLDN-------- 355 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 + + DE G P +T+ R + Sbjct: 356 ----------LPLAADFYDYIVIDEVHHVAASSY---RGLLEHFEPTILVGLTATPERHD 402 Query: 235 G 235 G Sbjct: 403 G 403 >gi|103487431|ref|YP_616992.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis RB2256] gi|98977508|gb|ABF53659.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis RB2256] Length = 459 Score = 44.2 bits (102), Expect = 0.034, Method: Composition-based stats. Identities = 24/195 (12%), Positives = 46/195 (23%), Gaps = 19/195 (9%) Query: 87 GIGKTTLNAWMMLWLISTRP------GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 G GKT + + + T P G ++ +A + + R + Sbjct: 49 GTGKTAGFSLPSIHHLLTYPHRPTPRGCRMLVLAPTRELAAQIAQS----------CRDY 98 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 LS+ + +Q + + DEA Sbjct: 99 GRFTKLSVSTVFGGVPINKQIRDLSQGVDILVATPGRLLDLIDQRALRLDDVEIFVLDEA 158 Query: 201 SGTPDIINKSIL---GFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257 D+ L + + + + G N P+ Q T Sbjct: 159 DQMMDMGFIHSLRRVAKLLPSRRQNLFFSATMPKEIAGLADQFLNDPVTVSVAPQATTAE 218 Query: 258 VEGIDSGFHEGIISR 272 + F E + Sbjct: 219 KVRQFATFVEQKEKQ 233 >gi|146419877|ref|XP_001485898.1| hypothetical protein PGUG_01569 [Meyerozyma guilliermondii ATCC 6260] Length = 397 Score = 44.2 bits (102), Expect = 0.034, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 66/232 (28%), Gaps = 29/232 (12%) Query: 5 ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64 + D++L++EL + + + M P +KG F P Q + + Sbjct: 1 MDFDRELDEELEFTKLTKKVKIYPTFESMNLKPELLKGIYNYGFEAPSAIQSRAIMQI-- 58 Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI-STRPGMSIICIANSETQLKNT 123 + G GKT + +L LI + + ++ + Sbjct: 59 -IRGRDTIAQAQS---------GTGKTATFSIGILSLIDTKSKDCQALVLSPT------- 101 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 E+++ + + H + ++ H ++ E + + I+ Sbjct: 102 --RELAQQIENVI-EHLGDYMNVRSHACIGGTQVGEDVKKLQQGQHIISGTPGRVLDMIK 158 Query: 184 FVGPHNTHGMAVFNDEAS-----GTPDIINKSILGFFTELNPNRFWIMTSNT 230 H + DEA G + I + I T Sbjct: 159 RRNIMPRHVKMLVLDEADELLTKGFKEQIYE-IYKTLPAGAQVVVVSATLTP 209 >gi|317968585|ref|ZP_07969975.1| magnesium chelatase, ATPase subunit D [Synechococcus sp. CB0205] Length = 691 Score = 44.2 bits (102), Expect = 0.034, Method: Composition-based stats. Identities = 31/244 (12%), Positives = 64/244 (26%), Gaps = 30/244 (12%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA----NSETQLKNTLWAEVSKWLSML 135 I+ GRG GK+ L + + P + ++ + N++ Q A L+ L Sbjct: 38 VVIAGGRGTGKSVLARGL----HALLPPIDVLDVGGHGLNTDPQAPEDWDAPTRARLTEL 93 Query: 136 PHRH----WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191 + + P+ + L + +T S E H Sbjct: 94 GADPTGADKQALLPTKVIPAPFVQVPLGITEDRLVGSVDVTASLASGEAVFQPGLLAEAH 153 Query: 192 GMAVFNDEASGTPDIINKSILGFFTELNPNR-------------FWIMTSNTRRLNGWFY 238 ++ DE + D + +L I T N Sbjct: 154 RGVLYVDELNLLDDNVTNLLLAAIGSGENRVEREGLSLSHPCRCLLIATYNPEEGA---- 209 Query: 239 DIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIP 298 I + L+ + + +E + S+ R + + Sbjct: 210 -IRDHLLDRFAIALSANQVLELDQRVEITRSAIGHAESSESFRQRWQEETDALSTQLLLA 268 Query: 299 HNYI 302 ++ Sbjct: 269 RQWL 272 >gi|311063565|ref|YP_003970290.1| DNA/RNA helicase [Bifidobacterium bifidum PRL2010] gi|310865884|gb|ADP35253.1| DNA/RNA helicase (DEAD/DEAH box family) [Bifidobacterium bifidum PRL2010] Length = 1061 Score = 44.2 bits (102), Expect = 0.034, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 64/221 (28%), Gaps = 35/221 (15%) Query: 16 HEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFS-QPHRWQLEFMEAVDVHCHSNVNNSN 74 + FK P K LE QP+ Q E + ++ + Sbjct: 215 LTEEWIKQYEEDFK---KYAPPRRDILKSLEGREIQPNAMQKEALASLKKLREKGEH--- 268 Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 + I + G GKT L+A + + ++ IA + LK + + Sbjct: 269 ----RAIIVSATGTGKTYLSA----FDVREYRPRRMLYIAQQQMILKAAMKSYQKVL--G 318 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 P S D ++ T +T +P+ + Sbjct: 319 CPQSELGLYTGT--------------SKQQDRRYVFATVQTMR--QPEALAQFASDEFDY 362 Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 V DE + ++ F + + MT+ R +G Sbjct: 363 VLVDEVHHAGAEGYQRVIDHFRDAD--FMLGMTATPERTDG 401 >gi|310286672|ref|YP_003937930.1| DNA/RNA helicase (DEAD/DEAH box family) [Bifidobacterium bifidum S17] gi|309250608|gb|ADO52356.1| DNA/RNA helicase (DEAD/DEAH box family) [Bifidobacterium bifidum S17] Length = 1061 Score = 44.2 bits (102), Expect = 0.034, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 64/221 (28%), Gaps = 35/221 (15%) Query: 16 HEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFS-QPHRWQLEFMEAVDVHCHSNVNNSN 74 + FK P K LE QP+ Q E + ++ + Sbjct: 215 LTEEWIKQYEEDFK---KYAPPRRDILKSLEGREIQPNAMQKEALASLKKLREKGEH--- 268 Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 + I + G GKT L+A + + ++ IA + LK + + Sbjct: 269 ----RAIIVSATGTGKTYLSA----FDVREYRPRRMLYIAQQQMILKAAMKSYQKVL--G 318 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 P S D ++ T +T +P+ + Sbjct: 319 CPQSELGLYTGT--------------SKQQDRRYVFATVQTMR--QPEALAQFASDEFDY 362 Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 V DE + ++ F + + MT+ R +G Sbjct: 363 VLVDEVHHAGAEGYQRVIDHFRDAD--FMLGMTATPERTDG 401 >gi|237809847|ref|YP_002894287.1| type III restriction protein res subunit [Tolumonas auensis DSM 9187] gi|237502108|gb|ACQ94701.1| type III restriction protein res subunit [Tolumonas auensis DSM 9187] Length = 1046 Score = 44.2 bits (102), Expect = 0.034, Method: Composition-based stats. Identities = 25/185 (13%), Positives = 54/185 (29%), Gaps = 28/185 (15%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P Q E +E + V + ++ + A G GKT ++A+ + +P + Sbjct: 320 PFPHQQEILEQLT------VERTLHQRYRNLVVAATGTGKTLISAFDFARFLKQKPDATF 373 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + IA+ E LK + L ++ + H + + + + Sbjct: 374 LFIAHREEILKQA-QSAYRGVLRNSSFGEFWAGNTTPDHYRQLFVTIQTLNNQLPQ---- 428 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 + + + DE +P +T+ Sbjct: 429 --------------LQLTADYYDYIVIDEVHHIAAQSY---RRVLDNFSPTILLGLTATP 471 Query: 231 RRLNG 235 R +G Sbjct: 472 ERHDG 476 >gi|225156013|ref|ZP_03724496.1| hypothetical protein ObacDRAFT_8995 [Opitutaceae bacterium TAV2] gi|224803246|gb|EEG21486.1| hypothetical protein ObacDRAFT_8995 [Opitutaceae bacterium TAV2] Length = 527 Score = 44.2 bits (102), Expect = 0.034, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 49/166 (29%), Gaps = 17/166 (10%) Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 R GKTT A L ++ PG I + S + E + RH Q Sbjct: 34 RQSGKTTTLALRALREMAAHPGRLITFASASLLVGHEVIEKEAHLFRE--ILRHVQSQQK 91 Query: 146 LSLHPSGWYAELLEQSMGIDS-----KHYTITCRTYSEERPDTFVGPHNTHGMA------ 194 + + + D + + + + ++ + + Sbjct: 92 NPIVAEDAHGRDVLADGTDDDFAAAFESRRMVVKLWHDDTVYSRTQVIAPNPATARGFTG 151 Query: 195 -VFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 V DE D + +++ + +P+ ++ + + F Sbjct: 152 SVMIDECGLIADFRGVWDAMIYIMSS-DPSFTCLLATTPPIDDNHF 196 >gi|170727588|ref|YP_001761614.1| type III restriction protein res subunit [Shewanella woodyi ATCC 51908] gi|169812935|gb|ACA87519.1| type III restriction protein res subunit [Shewanella woodyi ATCC 51908] Length = 884 Score = 44.2 bits (102), Expect = 0.034, Method: Composition-based stats. Identities = 25/205 (12%), Positives = 57/205 (27%), Gaps = 30/205 (14%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q + A+ H + + + A G GKTTL + L + + Sbjct: 8 RPYQERVLNAIKEHLNDE---------RLHVVAAPGAGKTTLGLEVFRVL-----EKTTL 53 Query: 112 CIANSETQLKNTLWAEVSK-----------WLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 ++ + +++ + W+S H +AE E Sbjct: 54 VLSPT-RVIRDQWIERLKDFTGTGDETKLNWVSNSIHDPKVLTSITYQALHAKFAE--EL 110 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM-AVFNDEASGTPDIINKSILGFFTELN 219 + D + ++F+ H + + DEA +++ Sbjct: 111 NADEDEGVLLEEDDGLKDNEVNSFIKVIEEHKIQILILDEAHHLRAEWWRALEKVCEYFP 170 Query: 220 PNRFWIMTSNTRRLN-GWFYDIFNI 243 +T+ G + + Sbjct: 171 DIILVSLTATPPYDAQGHEWARYEQ 195 >gi|87118190|ref|ZP_01074089.1| ATP-independent RNA helicase DbpA [Marinomonas sp. MED121] gi|86165824|gb|EAQ67090.1| ATP-independent RNA helicase DbpA [Marinomonas sp. MED121] Length = 461 Score = 44.2 bits (102), Expect = 0.034, Method: Composition-based stats. Identities = 31/298 (10%), Positives = 74/298 (24%), Gaps = 45/298 (15%) Query: 87 GIGKTTLNAWMMLWLISTRP-GMSIICIANSETQLKNTLWAEVSKWLSMLPH-RHWFEMQ 144 G GKT A ML I+ R G+ + + + +L + + E+ K L + + Sbjct: 52 GSGKTLAFAIGMLMKINPRYFGVQGLVMCPT-RELADQVCKEIRKTARFLENIKVLSLCG 110 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + P E + + + DEA Sbjct: 111 GMPFGPQIGSLEH---------GAHIVVGTPGRLLEHVRKGTLRLDSLNTLVLDEADRML 161 Query: 205 DIINKSILGFF---TELNPNRFWIMTSNTRRLNGWFYDIFNIPL---------EDWKRYQ 252 D+ + T + + + + P Q Sbjct: 162 DMGFVDSIRTLVESTPKKRQTLMFSATYPETIGKISAEFQHNPKTIKVEATQESKPDIKQ 221 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDV--ARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310 ++ + + + + +I Q + + H +A+ + Sbjct: 222 FFVKSNKDDKPYALMSAVRYQNPEQAIVFCNTKIECQ---TIADFLVDHKISAKAIHGDL 278 Query: 311 ID-----------DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETN 357 + +++ D+A G D + + + + + Sbjct: 279 EQRDRDQVLVQFSNASCRILVATDVAARGID-----VKEVDTVINYDTTRDIDVHTHR 331 >gi|56414723|ref|YP_151798.1| phage gene [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363650|ref|YP_002143287.1| phage gene [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128980|gb|AAV78486.1| putative phage gene [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095127|emb|CAR60674.1| putative phage gene [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 591 Score = 44.2 bits (102), Expect = 0.035, Method: Composition-based stats. Identities = 41/351 (11%), Positives = 78/351 (22%), Gaps = 76/351 (21%) Query: 38 WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97 + W E + H N+ I R IG T A+ Sbjct: 126 YKKNDISSLTQEDFDTWAEEHLFEYQKHLRRNIGQLVRN-----ILKSRQIGATWYFAFE 180 Query: 98 MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 I A+ + AE + + +F + Sbjct: 181 AFENAVMTGDPQIFLSASK-------VQAEYFRSYIVNIAEQYFGITLTGNPIRLSNGAE 233 Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFF 215 L + T ++YS ++ DE P+ +N+ Sbjct: 234 LRFLSTNKN-----TAQSYSGH---------------LYCDEYFWVPNFTKLNEVASAMA 273 Query: 216 TELNPNRFWIMTSNTRRLNG-----WFYDIFNIPLEDWKRYQIDTRT--------VEGID 262 T S W D + + + T Sbjct: 274 THDKWRT--TYFSTPSAKTHQAYPFWTGDEWKQGSKKRTAIKFPTFDELRDGGRVCPDGQ 331 Query: 263 SGFHEGIISRYGLDSDVARIE--------------ILGQFPQQEVNNFIPHNYIEEA--- 305 + + ++A IE + F ++ + +E Sbjct: 332 WRYVITMEDAIAGGFNLANIEKLRNRYNTATFNMLYMCVFVD-NKDSVFSFSDLEACGVE 390 Query: 306 --MSREAIDDLYAPL----IMG-CDIAGEGGDKTVVVFRRGNIIEHIFDWS 349 ++ D P + G D A G D + V + + + Sbjct: 391 VDTWQDHNPDAARPFGDRPVWGGFDPARSG-DLSCFVIV-APPMFAVEKFR 439 >gi|323352542|gb|EGA85041.1| Kre33p [Saccharomyces cerevisiae VL3] Length = 966 Score = 44.2 bits (102), Expect = 0.035, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 10/127 (7%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 F A++AGRG GK+ + + + +I + S LK L+ + K L + Sbjct: 187 FTVALTAGRGRGKSAAL-GISIAAAVSHGYSNIFVTSPSPENLKT-LFEFIFKGFDALGY 244 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + + + + ++ + D + +T P V Sbjct: 245 QEHIDYDIIQSTNPDFNKAIVRVDIKRDHR------QTIQYIVPQDHQVLG--QAELVVI 296 Query: 198 DEASGTP 204 DEA+ P Sbjct: 297 DEAAAIP 303 >gi|323335941|gb|EGA77219.1| Kre33p [Saccharomyces cerevisiae Vin13] Length = 961 Score = 44.2 bits (102), Expect = 0.035, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 10/127 (7%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 F A++AGRG GK+ + + + +I + S LK L+ + K L + Sbjct: 187 FTVALTAGRGRGKSAAL-GISIAAAVSHGYSNIFVTSPSPENLKT-LFEFIFKGFDALGY 244 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + + + + ++ + D + +T P V Sbjct: 245 QEHIDYDIIQSTNPDFNKAIVRVDIKRDHR------QTIQYIVPQDHQVLG--QAELVVI 296 Query: 198 DEASGTP 204 DEA+ P Sbjct: 297 DEAAAIP 303 >gi|307286565|ref|ZP_07566657.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis TX0109] gi|306502276|gb|EFM71557.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis TX0109] Length = 439 Score = 44.2 bits (102), Expect = 0.035, Method: Composition-based stats. Identities = 29/253 (11%), Positives = 71/253 (28%), Gaps = 23/253 (9%) Query: 94 NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153 A +++ + R ++ + I + ++ +++ ++ + +F++ + Sbjct: 49 IAHIIV-QLIMRYPVNAVAIRYVDNTIELSIFEQIKWAIEEQGVSKYFKVNKSPMK---- 103 Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSIL 212 + + I R + + +E A + K+I Sbjct: 104 --------ITYKPRGNYIVFRGAQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTIT 155 Query: 213 GFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDWKRYQIDTRTVEGIDSGF 265 + + N R W + E+ + + I F Sbjct: 156 NSLLRGELADGLFYKFFYSYNPPKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAF 215 Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325 E + + + A E G+ V F I+ + E + + + G D Sbjct: 216 IEEVNATRAKNPKRAEWEYDGKAIGSGVVPFDNLRVIKGCI-TEEMVANFDNIRNGLDF- 273 Query: 326 GEGGDKTVVVFRR 338 G D V Sbjct: 274 GYATDPLAFVRWH 286 >gi|302677588|ref|XP_003028477.1| hypothetical protein SCHCODRAFT_60365 [Schizophyllum commune H4-8] gi|300102165|gb|EFI93574.1| hypothetical protein SCHCODRAFT_60365 [Schizophyllum commune H4-8] Length = 1761 Score = 44.2 bits (102), Expect = 0.035, Method: Composition-based stats. Identities = 36/294 (12%), Positives = 77/294 (26%), Gaps = 46/294 (15%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P WQ ++A+D + + A GKT ++ + M ++ + Sbjct: 757 PDAWQRRVLDAIDRNSS------------LLVIAPTSSGKTFISYYAMEQVLRESDKGIL 804 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + IA ++ + ++ LP + MQ+ + ++ Sbjct: 805 VYIAPTKALVAQIAAEVYGRFKKTLPSGSLWAMQTRDYRIQDPQNCQILITVPEMLAIML 864 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN---RFWIMT 227 ++ P + DE ++ L P Sbjct: 865 LSPPLAKSWTP---------RIKRIILDEIHSIGQQEGGAVWEQILLLAPCPVIGLSATI 915 Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287 + R+ N W + + + + R + Sbjct: 916 GSPRKFNDWLASVQRAHGYEHELVEHPHRYSHLRKYQYVLAKKPPKFQGLATYE------ 969 Query: 288 FPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGD----KTVVVFR 337 P + + P + + + P M D+A E D TV+ R Sbjct: 970 -PSERIQFLHPASML-----------VNGPRAMPPDLAFEASDTLSLYTVLAKR 1011 >gi|294656530|ref|XP_002770282.1| DEHA2D07942p [Debaryomyces hansenii CBS767] gi|199431539|emb|CAR65638.1| DEHA2D07942p [Debaryomyces hansenii] Length = 828 Score = 44.2 bits (102), Expect = 0.035, Method: Composition-based stats. Identities = 32/246 (13%), Positives = 67/246 (27%), Gaps = 21/246 (8%) Query: 31 FVMRFFPWGIK--GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGI 88 ++ FP+ P++ QP ++ + + + + ++ G+ Sbjct: 187 YLKDVFPYLQAVDKIPVQRAEQPPGMNIKLLPFQQEGLNWLIKQEDGEYGGGILADEMGM 246 Query: 89 GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148 GKT + L ++ RP + + Q KN + L + H S Sbjct: 247 GKTIQMIALFLSDLTKRPNLVVGPTVA-LMQWKNEIEKHTKGNLLKVLLFHGANRSSDLE 305 Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208 + + L S+ H V DEA D + Sbjct: 306 ELNKYDIILTSYSVLESVYRKEKYGFKRKNGLVKETSPLHALKFYRVILDEAHNIKDRTS 365 Query: 209 KSILGFFTELNPNRFWIMTSNTRRL-----------------NGWFYDIFNIPLEDWKRY 251 + +N + W +T + + +F + ++WK Sbjct: 366 GTAKAA-NNVNCIKKWCLTGTPLQNRIGEMYSLIRFLKLEPFHKYFCTKCDCSSDEWKFS 424 Query: 252 QIDTRT 257 Sbjct: 425 NWRHCD 430 >gi|190409119|gb|EDV12384.1| hypothetical protein SCRG_03266 [Saccharomyces cerevisiae RM11-1a] Length = 1056 Score = 44.2 bits (102), Expect = 0.035, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 10/127 (7%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 F A++AGRG GK+ + + + +I + S LK L+ + K L + Sbjct: 277 FTVALTAGRGRGKSAAL-GISIAAAVSHGYSNIFVTSPSPENLKT-LFEFIFKGFDALGY 334 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + + + + ++ + D + +T P V Sbjct: 335 QEHIDYDIIQSTNPDFNKAIVRVDIKRDHR------QTIQYIVPQDHQVLG--QAELVVI 386 Query: 198 DEASGTP 204 DEA+ P Sbjct: 387 DEAAAIP 393 >gi|151944405|gb|EDN62683.1| killer toxin resistant protein [Saccharomyces cerevisiae YJM789] gi|207341763|gb|EDZ69729.1| YNL132Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi|256273837|gb|EEU08759.1| Kre33p [Saccharomyces cerevisiae JAY291] gi|259149229|emb|CAY82471.1| Kre33p [Saccharomyces cerevisiae EC1118] Length = 1056 Score = 44.2 bits (102), Expect = 0.035, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 10/127 (7%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 F A++AGRG GK+ + + + +I + S LK L+ + K L + Sbjct: 277 FTVALTAGRGRGKSAAL-GISIAAAVSHGYSNIFVTSPSPENLKT-LFEFIFKGFDALGY 334 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + + + + ++ + D + +T P V Sbjct: 335 QEHIDYDIIQSTNPDFNKAIVRVDIKRDHR------QTIQYIVPQDHQVLG--QAELVVI 386 Query: 198 DEASGTP 204 DEA+ P Sbjct: 387 DEAAAIP 393 >gi|27366822|ref|NP_762349.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6] gi|320158706|ref|YP_004191084.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O] gi|27358389|gb|AAO07339.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6] gi|319934018|gb|ADV88881.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O] Length = 427 Score = 44.2 bits (102), Expect = 0.035, Method: Composition-based stats. Identities = 25/272 (9%), Positives = 76/272 (27%), Gaps = 38/272 (13%) Query: 87 GIGKTTLNAWMMLWLIST------RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 G GKT + ++ + R + A + E+++ ++ + + Sbjct: 48 GTGKTAAFSLPLIQQLLESGKSASRKTARALIFAPT---------RELAEQIADNI-KAY 97 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + +LS+ ++ Q +++ + E + + DEA Sbjct: 98 TKYTNLSVAAIFGGRKMSSQERMLENGVDILVATPGRLEEHIESGNVSVANIEFLVFDEA 157 Query: 201 SGT-PDIINKSILGFFTE-LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 ++ + + + ++ T + + +T Sbjct: 158 DRILDMGFINAVRKIMLDVETNPQIMMFSATTSSQLNELSKDILRKPKRIAVERENTTAH 217 Query: 259 EG------IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN------------NFIPHN 300 +D ++S + ++ + + + + N + Sbjct: 218 TVAHVLYPVDQERKTELLSELIGRKNWQQVLVFVNYKETANDIVKELKLDGIKANVCHGD 277 Query: 301 YIEEAMSREAIDDLYA--PLIMGCDIAGEGGD 330 + A R + +++ D+A G D Sbjct: 278 KAQSARRRALEEFKEGKVRVMVATDVAARGLD 309 >gi|37676599|ref|NP_936995.1| DNA and RNA helicase [Vibrio vulnificus YJ016] gi|37201142|dbj|BAC96965.1| DNA and RNA helicase [Vibrio vulnificus YJ016] Length = 445 Score = 44.2 bits (102), Expect = 0.035, Method: Composition-based stats. Identities = 25/272 (9%), Positives = 76/272 (27%), Gaps = 38/272 (13%) Query: 87 GIGKTTLNAWMMLWLIST------RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 G GKT + ++ + R + A + E+++ ++ + + Sbjct: 66 GTGKTAAFSLPLIQQLLESGKSASRKTARALIFAPT---------RELAEQIADNI-KAY 115 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + +LS+ ++ Q +++ + E + + DEA Sbjct: 116 TKYTNLSVAAIFGGRKMSSQERMLENGVDILVATPGRLEEHIESGNVSVANIEFLVFDEA 175 Query: 201 SGT-PDIINKSILGFFTE-LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 ++ + + + ++ T + + +T Sbjct: 176 DRILDMGFINAVRKIMLDVETNPQIMMFSATTSSQLNELSKDILRKPKRIAVERENTTAH 235 Query: 259 EG------IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN------------NFIPHN 300 +D ++S + ++ + + + + N + Sbjct: 236 TVAHVLYPVDQERKTELLSELIGRKNWQQVLVFVNYKETANDIVKELKLDGIKANVCHGD 295 Query: 301 YIEEAMSREAIDDLYA--PLIMGCDIAGEGGD 330 + A R + +++ D+A G D Sbjct: 296 KAQSARRRALEEFKEGKVRVMVATDVAARGLD 327 >gi|6324197|ref|NP_014267.1| Kre33p [Saccharomyces cerevisiae S288c] gi|1730777|sp|P53914|KRE33_YEAST RecName: Full=UPF0202 protein KRE33; AltName: Full=Killer toxin-resistance protein 33 gi|854505|emb|CAA86893.1| orf16 [Saccharomyces cerevisiae] gi|1302072|emb|CAA96014.1| unnamed protein product [Saccharomyces cerevisiae] gi|285814522|tpg|DAA10416.1| TPA: Kre33p [Saccharomyces cerevisiae S288c] Length = 1056 Score = 44.2 bits (102), Expect = 0.035, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 10/127 (7%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 F A++AGRG GK+ + + + +I + S LK L+ + K L + Sbjct: 277 FTVALTAGRGRGKSAAL-GISIAAAVSHGYSNIFVTSPSPENLKT-LFEFIFKGFDALGY 334 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + + + + ++ + D + +T P V Sbjct: 335 QEHIDYDIIQSTNPDFNKAIVRVDIKRDHR------QTIQYIVPQDHQVLG--QAELVVI 386 Query: 198 DEASGTP 204 DEA+ P Sbjct: 387 DEAAAIP 393 >gi|293510345|ref|ZP_06669051.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus M809] gi|291466709|gb|EFF09229.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus M809] Length = 564 Score = 44.2 bits (102), Expect = 0.036, Method: Composition-based stats. Identities = 27/283 (9%), Positives = 76/283 (26%), Gaps = 55/283 (19%) Query: 82 ISAGRGIGKTTLNAWM----MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 IS R GK+ + + M +L+ + I +++ Q + + S+ ++++ Sbjct: 96 ISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQTI-FKMASQQVNLMRS 154 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + F + + + + + + Sbjct: 155 KSKFIREKTDVR---------KTDIEDILSSSVFAPLS------NNPDAVDGKDPTVAIL 199 Query: 198 DEASGTPDIINKSILGF-FTELNPNRFWIMTSNTRRLNGWFYDIF--------------- 241 DE + PD S T ++++ LN Y + Sbjct: 200 DELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMYQEYKYIKRILNEEVRADN 259 Query: 242 -----------NIPLEDWKRYQID----TRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 ++ K + ++ + I ++ Sbjct: 260 YFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVKADIQDELEKGTSYHKILIK 319 Query: 287 QFP---QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAG 326 F Q ++ + + E+ ++ + + +G D++ Sbjct: 320 NFNLWQAQREDSLLDISDWEQVITPMPNIN-GKDVYIGVDLSR 361 >gi|313904699|ref|ZP_07838073.1| type III restriction protein res subunit [Eubacterium cellulosolvens 6] gi|313470492|gb|EFR65820.1| type III restriction protein res subunit [Eubacterium cellulosolvens 6] Length = 1007 Score = 44.2 bits (102), Expect = 0.036, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 61/189 (32%), Gaps = 31/189 (16%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 + QP+ Q+ F+ + S VNN + + + G GKT +A+ M L Sbjct: 228 YKLQPNSMQVGFITNLKKILASKVNND-----RALLISATGTGKTYASAFAMRELGF--- 279 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 ++ + + + T + + + S S+ A D+ Sbjct: 280 -KRVLFLVHRGQLARQT-------------KKSYERVFSKSVSMGLVGAGKD----EYDA 321 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226 + T +T S + + + DEA P + I P + M Sbjct: 322 DYIFATVQTLSRD--EHLQKFDKESFDCIILDEAHHVPANTYQKI---MRHFTPKLWLGM 376 Query: 227 TSNTRRLNG 235 T+ + + Sbjct: 377 TATPDKRDD 385 >gi|218905500|ref|YP_002453334.1| putative phage terminase, large subunit [Bacillus cereus AH820] gi|218536827|gb|ACK89225.1| putative phage terminase, large subunit [Bacillus cereus AH820] Length = 565 Score = 44.2 bits (102), Expect = 0.036, Method: Composition-based stats. Identities = 39/280 (13%), Positives = 80/280 (28%), Gaps = 56/280 (20%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLP-HR 138 I R GK+TL + + L+L G + +AN Q K ++ E + + P R Sbjct: 115 IMIARKNGKSTLASAIALYLFMKDNEYGARVYTLANKRDQAK-LVFEEAKRMVKQSPALR 173 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + L+ + +EL S+ + + H D Sbjct: 174 RRVRIIRDKLYYNAMNSELEP---------------LASDSKKQDGLNTHG-----AIFD 213 Query: 199 EASGTPD-IINKSILGFFTELNPNRFWIMTS--------------------NTRRLNGWF 237 E D + I + +T+ N + F Sbjct: 214 EIHEYKDRKLINVIQSSYDARTQPLILHITTAGFVLDGPLMKFYEVADKMLNETVEHDRF 273 Query: 238 YDIFN--IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL------DSDVARIEILGQFP 289 + P +DWK + + +D + + + + + L F Sbjct: 274 FAFIAEIDPEDDWKDEECWVKANPNLDVTITLEKLREAYKTYVLNNEVNEFKTKRLNLFV 333 Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIM--GCDIAGE 327 + I++ +E ++ + G D++ Sbjct: 334 NAAEKWL-EWDVIKKNYEKEYDLEVLEGCMCIGGADLSET 372 >gi|149408208|ref|YP_001294642.1| hypothetical protein ORF049 [Pseudomonas phage PA11] Length = 535 Score = 44.2 bits (102), Expect = 0.036, Method: Composition-based stats. Identities = 25/198 (12%), Positives = 57/198 (28%), Gaps = 6/198 (3%) Query: 90 KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM-QSLSL 148 K+ + A W+I+ P ++I+ I+ + T + L+A + S + +R++ E Sbjct: 82 KSHMVATWCAWIITRHPEVTILYISATATLAETQLYAVKNILASSVYNRYFPEYIHPQEG 141 Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA--VFNDEASGTPDI 206 W + + K + G H +A + E + T D Sbjct: 142 KREKWSSNAMSIDHVQRKKEGIRDATIATAGLTTNTTGWHADIIVADDLVVPENAYTEDG 201 Query: 207 INKSILGF---FTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + N F + + + + + + + + Sbjct: 202 RESVQKKSSQFTSIRNAGGFTMACGTRYHPSDIYATWRSQKYDIFDDEGMKIDEHPVWEI 261 Query: 264 GFHEGIISRYGLDSDVAR 281 + L R Sbjct: 262 KEYAVEKDNIFLWPRTIR 279 >gi|84393955|ref|ZP_00992695.1| ATP-dependent RNA helicase SrmB [Vibrio splendidus 12B01] gi|84375399|gb|EAP92306.1| ATP-dependent RNA helicase SrmB [Vibrio splendidus 12B01] Length = 421 Score = 44.2 bits (102), Expect = 0.036, Method: Composition-based stats. Identities = 44/318 (13%), Positives = 83/318 (26%), Gaps = 50/318 (15%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 K + +P + Q E + SA G GKT L Sbjct: 16 KAIDEMGYERPTQIQAEAIPQALDG------------RDVLASAPTGTGKTASFVLPALQ 63 Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 + P ++ + + E ++ L+ + F + ++ Sbjct: 64 YLLDFPRKKSGPARMLILTPTRELAMQIT--EQARELAKYTSLNIFTITGGVMYQEHADI 121 Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 Q + + + DEA D+ ++ Sbjct: 122 LSTTQDI--------VVATPGRLMEYIEGERFDCRAIEWLVLDEADRMLDMGFGPVVDRL 173 Query: 216 TELNPNRFWIMTSNTR----RLNGWFYDIFNIP---------LEDWKRYQIDTR-TVEGI 261 + R + + + G+ D+ P E K Q R Sbjct: 174 SAECRWRKQTLLFSATLEGKGIEGFTEDLLKNPAEIDAKSSLRERKKITQWYHRADSAKH 233 Query: 262 DSGFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AID 312 + II+ S + + LG+ Q + IP +I E R Sbjct: 234 KLNILKHIITEQAERSIIFLKTRDRLGELRAQLESAQIPCVWIQGEMPQDRRNNAISRFR 293 Query: 313 DLYAPLIMGCDIAGEGGD 330 D +++ D+A G D Sbjct: 294 DGSINVLLATDVAARGID 311 >gi|71032923|ref|XP_766103.1| RNA helicase [Theileria parva strain Muguga] gi|68353060|gb|EAN33820.1| RNA helicase, putative [Theileria parva] Length = 1764 Score = 44.2 bits (102), Expect = 0.036, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 46/173 (26%), Gaps = 13/173 (7%) Query: 80 CAISAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 ++A G GKT L A + L+ + PG + IA + W L + Sbjct: 1006 LVVAAPTGSGKT-LVAELGLFRLFDKFPGKIAVYIAPLKALAHER----FKDWCKKLHFK 1060 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + ++ + + E+ T + T V D Sbjct: 1061 NILQLTGDTSSNNLDGQVHSERDELEKYDIVITTPEKWDGISRHWRRRKLVTKVGLVIID 1120 Query: 199 EASGTPDIINKSILGFFTELNP-------NRFWIMTSNTRRLNGWFYDIFNIP 244 E + I + +I S + + NIP Sbjct: 1121 ELHLLGESRGAIIESIISRQYTINHSTGVELRYICLSTSLSNLNEIAEWMNIP 1173 >gi|200389255|ref|ZP_03215867.1| putative conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199606353|gb|EDZ04898.1| putative conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 591 Score = 44.2 bits (102), Expect = 0.036, Method: Composition-based stats. Identities = 41/351 (11%), Positives = 78/351 (22%), Gaps = 76/351 (21%) Query: 38 WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97 + W E + H N+ I R IG T A+ Sbjct: 126 YKKNDISSLTQEDFDTWAEEHLFEYQKHLRRNIGQLVRN-----ILKSRQIGATWYFAFE 180 Query: 98 MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 I A+ + AE + + +F + Sbjct: 181 AFENAVMTGDPQIFLSASK-------VQAEYFRSYIVNIAEQYFGITLTGNPIRLSNGAE 233 Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFF 215 L + T ++YS ++ DE P+ +N+ Sbjct: 234 LRFLSTNKN-----TAQSYSGH---------------LYCDEYFWVPNFTKLNEVASAMA 273 Query: 216 TELNPNRFWIMTSNTRRLNG-----WFYDIFNIPLEDWKRYQIDTRT--------VEGID 262 T S W D + + + T Sbjct: 274 THDKWRT--TYFSTPSAKTHQAYPFWTGDEWKQGSKKRTAIKFPTFDELRDGGRVCPDGQ 331 Query: 263 SGFHEGIISRYGLDSDVARIE--------------ILGQFPQQEVNNFIPHNYIEEA--- 305 + + ++A IE + F ++ + +E Sbjct: 332 WRYVITMEDAIAGGFNLANIEKLRNRYNTATFNMLYMCVFVD-NKDSVFSFSDLEACGVE 390 Query: 306 --MSREAIDDLYAPL----IMG-CDIAGEGGDKTVVVFRRGNIIEHIFDWS 349 ++ D P + G D A G D + V + + + Sbjct: 391 VDTWQDHNPDAARPFGDRPVWGGFDPARSG-DLSCFVIV-APPMFAVEKFR 439 >gi|307207083|gb|EFN84892.1| Fanconi anemia group M protein [Harpegnathos saltator] Length = 1344 Score = 44.2 bits (102), Expect = 0.037, Method: Composition-based stats. Identities = 22/212 (10%), Positives = 60/212 (28%), Gaps = 19/212 (8%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + G+GKT + A +M P I+ +A ++ + ++ ++ Sbjct: 50 NTLVCLPTGLGKTFIAAVIMYNFWRWFPFGKIVFLAPTKPLVGQ----QIDACYEIMGI- 104 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + +G + Q + T + + ++ + V H V D Sbjct: 105 ----PSVDMIKLTGAVNQKNRQIYWFKKRIIFATPQVFHKDLEKSIVPSHL--VKCVVVD 158 Query: 199 EASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY-----Q 252 EA + + N + S T ++ + + + + Sbjct: 159 EAHKALGKHSYCESIRILSTQNKYFRILALSATPG--NKIDNVHEVIQNLYISHLELRDE 216 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 + ++ + I+ + + Sbjct: 217 DSIDIIPYVNKRKIDTILIPLSNELAQFKERY 248 >gi|308187132|ref|YP_003931263.1| Terminase, ATPase subunit (GpP) [Pantoea vagans C9-1] gi|308057642|gb|ADO09814.1| Terminase, ATPase subunit (GpP) [Pantoea vagans C9-1] Length = 587 Score = 44.2 bits (102), Expect = 0.037, Method: Composition-based stats. Identities = 32/318 (10%), Positives = 78/318 (24%), Gaps = 27/318 (8%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 FM+ + + + + + R IG T A L T G + I ++ S+ Sbjct: 140 FMDNCFEYQLNWHKAGLTHRIRNILKS-RQIGATFYFAREALIDALTT-GRNQIFLSASK 197 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177 Q + + + L + ++ + + + + Sbjct: 198 AQAH-VFKNYIIDFARQADVDLKGDPIVLPNGARLIFLGTNVRTAQSYTGNLYLDEYFWI 256 Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL---NPNRFWIMTSNTRRLN 234 + + + TP ++ S F++ R + Sbjct: 257 PKFQELRKVASGMSLHKKWRTTYFSTPSALSHSAYPFWSGELFNKGRRSKDDRIEIDLSH 316 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294 W++ + G + F + + ++ +F + Sbjct: 317 SHLAKGALCGDGQWRQIVTVEDALTGGCNLFDINQLQLEY-SPAEYQNLLMCEFVD-DEA 374 Query: 295 NFIPHNYIEEAMSREAIDDL-----------YAPLIMGCDIAGEGGDKTVVVFRRGN--- 340 + P ++ M + Y P+ +G D + G D Sbjct: 375 SVFPFAELQTCMIDSLEEWEDFNPYLPRPFAYRPVWIGYDPSHTG-DSAGCAVIAPPLVA 433 Query: 341 ----IIEHIFDWSAKLIQ 354 + W Sbjct: 434 GGKFRVLERHQWRGMDFA 451 >gi|229817453|ref|ZP_04447735.1| hypothetical protein BIFANG_02716 [Bifidobacterium angulatum DSM 20098] gi|229785242|gb|EEP21356.1| hypothetical protein BIFANG_02716 [Bifidobacterium angulatum DSM 20098] Length = 1055 Score = 44.2 bits (102), Expect = 0.037, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 61/186 (32%), Gaps = 32/186 (17%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +P+R Q E + + + + + + G GKT L+A + + Sbjct: 238 EPNRMQREALANLRRLRAEGEH-------RAIVISATGTGKTYLSA----FDVKQFHPKR 286 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ IA+ + + + + + E+ LS + + Sbjct: 287 MLYIAH-----REEILIKARESYRKVLGCDESELGVLSGNSKQGDRKY------------ 329 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 + + P+T H + DEA + I+ +FT P+ MT+ Sbjct: 330 -VFAMVNTLSNPETLASFGKEHFDYILIDEAHHVSAASYRRIIDYFT---PDFMLGMTAT 385 Query: 230 TRRLNG 235 R +G Sbjct: 386 PERTDG 391 >gi|258544585|ref|ZP_05704819.1| CRISPR-associated helicase Cas3 domain protein [Cardiobacterium hominis ATCC 15826] gi|258520163|gb|EEV89022.1| CRISPR-associated helicase Cas3 domain protein [Cardiobacterium hominis ATCC 15826] Length = 747 Score = 44.2 bits (102), Expect = 0.038, Method: Composition-based stats. Identities = 31/207 (14%), Positives = 48/207 (23%), Gaps = 18/207 (8%) Query: 55 QLEFME---AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 Q E + H P +F + G GKT + L II Sbjct: 221 QAELNRLRSEILEHAQQQAALP-PGLFTLTV--PTGGGKTYTSMAFALEHARQYGQRRII 277 Query: 112 CIAN---SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 + Q H +L +L + D+ Sbjct: 278 YVVPFTTIIEQNAAAFRQAFGALGEAAVLEHHSTFDDSTLLDRDSRDKLRHATENWDAPV 337 Query: 169 YTITCRTYSE----ERPDTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFTELNP 220 T + E +R HN + DEA P + +I Sbjct: 338 IITTAVQFFESLFADRASRCRKLHNIANSIIILDEAQMLPLHLLRPVMAAIDELARNYRC 397 Query: 221 NRFWIMTSNTR-RLNGWFYDIFNIPLE 246 + + + FY F E Sbjct: 398 SVVMCTATQPAISADNGFYGGFEDVRE 424 >gi|224052027|ref|XP_002200489.1| PREDICTED: similar to Fanconi anemia, complementation group M [Taeniopygia guttata] Length = 1598 Score = 44.2 bits (102), Expect = 0.038, Method: Composition-based stats. Identities = 26/193 (13%), Positives = 46/193 (23%), Gaps = 12/193 (6%) Query: 49 SQPHRWQLEFMEAVDVHCHSNVNNSNPTI-------FKCAISAGRGIGKTTLNAWMMLWL 101 P R E ++ ++ + + G+GKT + A +M Sbjct: 42 PGPPRGFSEAAGSIWIYPTNLPVRPYQERMAGAALLANTLVCLPTGLGKTFVAAVVMYNF 101 Query: 102 ISTRPGMSIICIANSET---QLKNTLWAEVSKWLSML--PHRHWFEMQSLSLHPSGWYAE 156 P ++ +A ++ Q + + + L + Sbjct: 102 YRWFPSGKVLFLAPTKPLVAQQMEACGRVMGIPARDMAEMTGGTQALGRRELWNTKRVFF 161 Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT 216 L Q M D T D H E S D L Sbjct: 162 LTPQIMVNDLSRGTCPAVEIKCLVIDEAHKALGNHAYCQVVRELSKYTDQFRVLALSATP 221 Query: 217 ELNPNRFWIMTSN 229 + + SN Sbjct: 222 GSDTKAVQQVISN 234 >gi|86147398|ref|ZP_01065711.1| ATP-dependent RNA helicase SrmB [Vibrio sp. MED222] gi|218708540|ref|YP_002416161.1| ATP-dependent RNA helicase SrmB [Vibrio splendidus LGP32] gi|85834826|gb|EAQ52971.1| ATP-dependent RNA helicase SrmB [Vibrio sp. MED222] gi|218321559|emb|CAV17511.1| ATP-dependent RNA helicase srmB [Vibrio splendidus LGP32] Length = 421 Score = 44.2 bits (102), Expect = 0.038, Method: Composition-based stats. Identities = 44/318 (13%), Positives = 82/318 (25%), Gaps = 50/318 (15%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 K + +P + Q E + SA G GKT L Sbjct: 16 KAIDEMGYERPTQIQAEAIPQALDG------------RDVLASAPTGTGKTASFVLPALQ 63 Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 + P ++ + + E ++ L+ + F + ++ Sbjct: 64 YLLDFPRKKSGPARMLILTPTRELAMQIT--EQARELAKYTSLNIFTITGGVMYQEHADI 121 Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 Q + + + DEA D+ ++ Sbjct: 122 LSTTQDI--------VVATPGRLMEYIEGERFDCRAIEWLVLDEADRMLDMGFGPVVDRL 173 Query: 216 TELNPNRFWIMTSNTR----RLNGWFYDIFNIP---------LEDWKRYQIDTR-TVEGI 261 + R + + + G+ D+ P E K Q R Sbjct: 174 SAECRWRKQTLLFSATLEGKGIEGFTEDLLKNPAEIDAKSSLRERKKITQWYHRADSAKH 233 Query: 262 DSGFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AID 312 + II+ S + + LG Q + IP +I E R Sbjct: 234 KLDILKHIITEQAERSIIFLKTRDRLGDLRAQLESAQIPCVWIQGEMPQDRRNNAISRFR 293 Query: 313 DLYAPLIMGCDIAGEGGD 330 D +++ D+A G D Sbjct: 294 DGSINVLLATDVAARGID 311 >gi|167538349|ref|XP_001750839.1| hypothetical protein [Monosiga brevicollis MX1] gi|163770660|gb|EDQ84343.1| predicted protein [Monosiga brevicollis MX1] Length = 1758 Score = 43.8 bits (101), Expect = 0.038, Method: Composition-based stats. Identities = 32/255 (12%), Positives = 69/255 (27%), Gaps = 27/255 (10%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 SA +G+GKT + A +M P ++ +A ++ + +V+ ++ R Sbjct: 204 SAAQGLGKTFIAAVVMYNFWRWYPNGKVLFMAPTKPLVAQ----QVNACYQIMGFRAEDI 259 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 + +L ++ + V DEA Sbjct: 260 CEMTGSKQHEHRDKLWQRKRVFFLTPQCAVRDLQRG-------YFSAREVVCVVFDEAHR 312 Query: 203 TPDIINKS--ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ--IDTRTV 258 S I E + R +++ ++ L D + Sbjct: 313 ALGNHAYSLFIQSLLAESSQFRVMALSATPGDSVTKVQEVITNLLIDAIEIRGEEAADVA 372 Query: 259 EGIDSGFHEGIISRYGLDSDVARI---EILGQFPQQE-VNNFIPHNYIEEAMSREAIDDL 314 ++ E ++ D + R + F ++ + ++ SR Sbjct: 373 PYVNQRTAEKVVVPMSPDIEACRSMLNRVAQPFIKRLVQGRVLGETTLDRLTSRMLAITR 432 Query: 315 YAPLIMGCDIAGEGG 329 D A G Sbjct: 433 --------DRARSGD 439 >gi|329295805|ref|ZP_08253141.1| phage terminase large subunit [Plautia stali symbiont] Length = 470 Score = 43.8 bits (101), Expect = 0.038, Method: Composition-based stats. Identities = 36/290 (12%), Positives = 75/290 (25%), Gaps = 53/290 (18%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMS--IICIANSETQLKNTLWAEVSKWLSMLPHRH 139 + AG+G GK+ L A + L+ + + A + Q L+ + + P Sbjct: 4 VEAGKGSGKSPLAAGIGLYCLVADNEARAEVYAAATKKDQAM-ILFRDAVAMVDQSPK-- 60 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP-DTFVGPHNTHGMAVFND 198 A+ +++S G + + + RP G D Sbjct: 61 --------------LAKRIQKSGGAGKEWNLAFLQARAFFRPISADDGQSGPRPHCALID 106 Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTR-RLNGWFYDIFNIPL------------ 245 E ++ T+ M +N+ YD Sbjct: 107 EIHEHKSNQVVEMMRAGTKGRQQALIFMITNSGHNKTSVCYDYHEYGRKVAEGSIEDDSF 166 Query: 246 ---------------EDWKRYQIDTRTVEGIDSGFHEG---IISRYGLDSDVARIEILGQ 287 + + + + + + R Q Sbjct: 167 FAFICSLDEGDDPFKDSGCWKKANPSLGHTFSERYLQEQVTQARGMPAKESLVRRLNFCQ 226 Query: 288 FPQQEVNNFIPHNYIE-EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 + E +++ E S + +P G D++G+ D T + Sbjct: 227 WVDAENPWINSDSWMACEKTSLDLASLANSPCYGGLDLSGK-QDLTALAL 275 >gi|300933380|ref|ZP_07148636.1| phage-associated protein [Corynebacterium resistens DSM 45100] Length = 454 Score = 43.8 bits (101), Expect = 0.038, Method: Composition-based stats. Identities = 36/279 (12%), Positives = 75/279 (26%), Gaps = 36/279 (12%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT--TLNAWMMLWLISTRPG 107 +PH +Q + V+ H + AI G G+GKT TL A L L+ + Sbjct: 4 EPHDYQRQATAFVEDHPQA------------AILLGMGLGKTVITLTAIWNL-LLDSFHA 50 Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 ++ +A ++T AE +KW + + S + AE + + ++ Sbjct: 51 RRVLIVAP-LRVARDTWPAEATKWDHLAGLTIAVAVGSKAQRVDALAAEAMVTVINRENV 109 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227 + + +T+ V DE S + + + + Sbjct: 110 PWLV------RHLGNTW------PFDMVVIDELSSFKNHRAQRFKALASVRPRLTRIVGL 157 Query: 228 SNTRRLNGWFYDIFNI--------PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279 + T NG Y+ + + G + ++ Sbjct: 158 TGTPAANGLMDLWAQFRLLDEGQRLGRFITYYRNRWFVPDRRNGQQIFTYKPAPGAEGEI 217 Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318 + + + Sbjct: 218 YEAISDITLSMRTTDYLRLPELTVTTTLVDLEPKERKAY 256 >gi|295398439|ref|ZP_06808478.1| helicase [Aerococcus viridans ATCC 11563] gi|294973303|gb|EFG49091.1| helicase [Aerococcus viridans ATCC 11563] Length = 950 Score = 43.8 bits (101), Expect = 0.038, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 61/193 (31%), Gaps = 31/193 (16%) Query: 44 PLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS 103 P ++F P++ Q ++++ + + + + A G GKT L A+ +L Sbjct: 205 PAKNFIVPNKMQQPALDSLIELRQNGAD-------RGLVIAATGTGKTYLAAFDVL---- 253 Query: 104 TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163 ++ I + E L + + A + + P + Y +Q++ Sbjct: 254 ESKPEKVLFIVHREQILHSAM-ASFKRVMHTEPDDLFGFYTGNKKDSQAKYIFATQQTIT 312 Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223 D + + DE + I +F P Sbjct: 313 RDQHLHQFDP----------------EEFDYILVDEVHRAGSASYQRIFDYF---KPKFL 353 Query: 224 WIMTSNTRRLNGW 236 +T+ R +G+ Sbjct: 354 LGLTATPERTDGY 366 >gi|84394092|ref|ZP_00992827.1| Superfamily II DNA and RNA helicase [Vibrio splendidus 12B01] gi|86146725|ref|ZP_01065046.1| Superfamily II DNA and RNA helicase [Vibrio sp. MED222] gi|84375283|gb|EAP92195.1| Superfamily II DNA and RNA helicase [Vibrio splendidus 12B01] gi|85835572|gb|EAQ53709.1| Superfamily II DNA and RNA helicase [Vibrio sp. MED222] Length = 428 Score = 43.8 bits (101), Expect = 0.038, Method: Composition-based stats. Identities = 23/272 (8%), Positives = 70/272 (25%), Gaps = 38/272 (13%) Query: 87 GIGKTTLNAWMMLWLIST------RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 G GKT + ++ + R + +A + + + Sbjct: 48 GTGKTAAFSLPVIQHLLNSGKKASRGTARGLILAPTRELAAQIAQNI----------KDY 97 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + LS+ ++ Q ++ + E + + DEA Sbjct: 98 VKYTELSVSAVYGGNKMSSQVRQLELGVDILVATPGRLEEHLEAGNVSIANLEFLVFDEA 157 Query: 201 SGT-PDIINKSILGFFTE-LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 ++ + + + ++ T + + ++ Sbjct: 158 DRILDMGFINAVRKIMLDVETSPQIMMFSATTSTQLNQLSVDILRKPKRISVERENSTAS 217 Query: 259 EG------IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI------------PHN 300 +D ++S + ++ + + + + + Sbjct: 218 TVGHVVYPVDQERKTELLSELIGRKNWRQVLVFVNYKETANDVVKELKLDGIKAVLCHGD 277 Query: 301 YIEEAMSR--EAIDDLYAPLIMGCDIAGEGGD 330 + A R + + A +++ D+A G D Sbjct: 278 KAQSARRRALDDFKEGRARVMVATDVAARGLD 309 >gi|332994044|gb|AEF04099.1| hypothetical protein ambt_12905 [Alteromonas sp. SN2] Length = 792 Score = 43.8 bits (101), Expect = 0.039, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 44/149 (29%), Gaps = 8/149 (5%) Query: 70 VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129 N + I K I+A RG GK+ L + + G + + TL+ + Sbjct: 216 TNRWSQDIRKAVITAPRGRGKSALVGLFVASRL--NKGEKVAITSAIRDNT-TTLFKHIR 272 Query: 130 KWLSML----PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185 + +L + + P E + PD Sbjct: 273 LGMGLLNSEDKDQAGQSSDCTANPPDSNDTEPDAAKSATKENFSIKKGGSAQWLAPDNPT 332 Query: 186 GPHNTHGMAVFNDEASGTPDIINKSILGF 214 + + DEA+ P + K ++G Sbjct: 333 LINGD-FDLLIIDEAASFPLPVLKLLIGA 360 >gi|288959390|ref|YP_003449731.1| hypothetical protein AZL_025490 [Azospirillum sp. B510] gi|288911698|dbj|BAI73187.1| hypothetical protein AZL_025490 [Azospirillum sp. B510] Length = 478 Score = 43.8 bits (101), Expect = 0.039, Method: Composition-based stats. Identities = 29/262 (11%), Positives = 64/262 (24%), Gaps = 25/262 (9%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIIC---IANSETQLKNTLWAEVSKWLSMLPHR 138 I G KT+ +L +P + A + + W +P R Sbjct: 29 IMGPIGSAKTSTALMKILAHAVEQPEHRGVRYSRFAVIRDTYRRMGATTLRSWHKRVP-R 87 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + + ++ + + + D + + Sbjct: 88 DFGKFSDGGMNAPSIHHLRFLINDRSTVDCEVMFSA---VGDADVEDFCRGFEVTGGYLN 144 Query: 199 EASGTPDIINKSILGFFTELNP---------NRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249 EA + P W+ + + + D P ++ Sbjct: 145 EADLLAPELL-VHFPGRCGRYPDNTMGGCVWRGLWLDFNAPDTESHLYRDFVEAPKPGYR 203 Query: 250 RYQIDT------RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303 + + VE + G + G R +L Q+ + + + Sbjct: 204 LFIQPSGLGANAENVENLPGGAEYYRVEASGKPDWWVRRFVLNQWGYSREGKPVYPEWND 263 Query: 304 EAMS--REAIDDLYAPLIMGCD 323 R+ PL++G D Sbjct: 264 VLHVSARDLEPIPGVPLVIGAD 285 >gi|257079391|ref|ZP_05573752.1| terminase large subunit [Enterococcus faecalis JH1] gi|256987421|gb|EEU74723.1| terminase large subunit [Enterococcus faecalis JH1] Length = 430 Score = 43.8 bits (101), Expect = 0.039, Method: Composition-based stats. Identities = 28/253 (11%), Positives = 71/253 (28%), Gaps = 23/253 (9%) Query: 94 NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153 A +++ + R ++ + I + ++ +++ ++ + +F++ + Sbjct: 50 IAHIIV-QLIMRYPVNAVAIRYVDNTIELSIFEQIKWAIEEQGVSKYFKVNKSPMK---- 104 Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSIL 212 + + I R + + +E A + K+I Sbjct: 105 --------ITYKPRGNYIVFRGAQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTIT 156 Query: 213 GFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDWKRYQIDTRTVEGIDSGF 265 + + N R W + E+ + + I F Sbjct: 157 NSLLRGELADGLFYKFFYSYNPPKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAF 216 Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325 E + + + A E G+ V F I+ + + + + + G D Sbjct: 217 IEEVNATRAKNPKRAEWEYDGKAIGSGVVPFDNLRVIKGCI-TDEMAANFDNIRNGLDF- 274 Query: 326 GEGGDKTVVVFRR 338 G D V Sbjct: 275 GYATDPLAFVRWH 287 >gi|313139364|ref|ZP_07801557.1| DNA repair helicase rad25 [Bifidobacterium bifidum NCIMB 41171] gi|313131874|gb|EFR49491.1| DNA repair helicase rad25 [Bifidobacterium bifidum NCIMB 41171] Length = 1008 Score = 43.8 bits (101), Expect = 0.039, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 64/221 (28%), Gaps = 35/221 (15%) Query: 16 HEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFS-QPHRWQLEFMEAVDVHCHSNVNNSN 74 + FK P K LE QP+ Q E + ++ + Sbjct: 162 LTEEWIKQYEEDFK---KYAPPRRDILKSLEGREIQPNAMQKEALASLKKLREQGEH--- 215 Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 + I + G GKT L+A + + ++ IA + LK + + Sbjct: 216 ----RAIIVSATGTGKTYLSA----FDVREYRPRRMLYIAQQQMILKAAMKSYQKVL--G 265 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 P S D ++ T +T +P+ + Sbjct: 266 CPQSELGLYTGT--------------SKQQDRRYVFATVQTMR--QPEALAQFASDEFDY 309 Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 V DE + ++ F + + MT+ R +G Sbjct: 310 VLVDEVHHAGAEGYQRVIDHFRDAD--FMLGMTATPERTDG 348 >gi|224282225|ref|ZP_03645547.1| DNA or RNA helicase of superfamily II [Bifidobacterium bifidum NCIMB 41171] Length = 1061 Score = 43.8 bits (101), Expect = 0.039, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 64/221 (28%), Gaps = 35/221 (15%) Query: 16 HEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFS-QPHRWQLEFMEAVDVHCHSNVNNSN 74 + FK P K LE QP+ Q E + ++ + Sbjct: 215 LTEEWIKQYEEDFK---KYAPPRRDILKSLEGREIQPNAMQKEALASLKKLREQGEH--- 268 Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 + I + G GKT L+A + + ++ IA + LK + + Sbjct: 269 ----RAIIVSATGTGKTYLSA----FDVREYRPRRMLYIAQQQMILKAAMKSYQKVL--G 318 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 P S D ++ T +T +P+ + Sbjct: 319 CPQSELGLYTGT--------------SKQQDRRYVFATVQTMR--QPEALAQFASDEFDY 362 Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 V DE + ++ F + + MT+ R +G Sbjct: 363 VLVDEVHHAGAEGYQRVIDHFRDAD--FMLGMTATPERTDG 401 >gi|168748234|ref|ZP_02773256.1| large subunit terminase [Escherichia coli O157:H7 str. EC4113] gi|168760844|ref|ZP_02785851.1| large subunit terminase [Escherichia coli O157:H7 str. EC4501] gi|168764789|ref|ZP_02789796.1| large subunit terminase [Escherichia coli O157:H7 str. EC4501] gi|168772888|ref|ZP_02797895.1| large subunit terminase [Escherichia coli O157:H7 str. EC4196] gi|168780241|ref|ZP_02805248.1| large subunit terminase [Escherichia coli O157:H7 str. EC4076] gi|189402095|ref|ZP_02780143.2| large subunit terminase [Escherichia coli O157:H7 str. EC4401] gi|189403042|ref|ZP_02793017.2| large subunit terminase [Escherichia coli O157:H7 str. EC4486] gi|189405676|ref|ZP_02823562.2| large subunit terminase [Escherichia coli O157:H7 str. EC508] gi|217327251|ref|ZP_03443334.1| hypothetical protein ESCCO14588_4827 [Escherichia coli O157:H7 str. TW14588] gi|217328376|ref|ZP_03444458.1| hypothetical protein ESCCO14588_2657 [Escherichia coli O157:H7 str. TW14588] gi|187771105|gb|EDU34949.1| large subunit terminase [Escherichia coli O157:H7 str. EC4196] gi|188017182|gb|EDU55304.1| large subunit terminase [Escherichia coli O157:H7 str. EC4113] gi|189001958|gb|EDU70944.1| large subunit terminase [Escherichia coli O157:H7 str. EC4076] gi|189357684|gb|EDU76103.1| large subunit terminase [Escherichia coli O157:H7 str. EC4401] gi|189362789|gb|EDU81208.1| large subunit terminase [Escherichia coli O157:H7 str. EC4486] gi|189365267|gb|EDU83683.1| large subunit terminase [Escherichia coli O157:H7 str. EC4501] gi|189368739|gb|EDU87155.1| large subunit terminase [Escherichia coli O157:H7 str. EC4501] gi|189378960|gb|EDU97376.1| large subunit terminase [Escherichia coli O157:H7 str. EC508] gi|217318803|gb|EEC27229.1| hypothetical protein ESCCO14588_2657 [Escherichia coli O157:H7 str. TW14588] gi|217319618|gb|EEC28043.1| hypothetical protein ESCCO14588_4827 [Escherichia coli O157:H7 str. TW14588] Length = 553 Score = 43.8 bits (101), Expect = 0.039, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 50/240 (20%), Gaps = 37/240 (15%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 Q + ++ K I R +G +T +L P + Sbjct: 40 RPAQRQLFRSMHN--------------KNIILKARQLGFSTAIDIYLLDQALFIPHLKCG 85 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 +A + +++ LP + + Sbjct: 86 IVAQDKQAASEIFRTKIAVPFDHLPDWLRASFTIVERRSGASG-----GYILFGHGSSIQ 140 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 ++ + + P + G ++ S Sbjct: 141 VATSFRSGTVQRLHISEHGKI-------CAKYPAKAKELRTGTLNAVSDECIIFDESTAE 193 Query: 232 RLNGWFYDIFNIPLE-----------DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280 + G FY++ N E D+K + + E + Sbjct: 194 GVGGDFYEMSNRAQEITASGLLLTAQDYKFHFYAWWQDPKYSARVPESGLKLSREKMTYF 253 >gi|168262802|ref|ZP_02684775.1| putative conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205348497|gb|EDZ35128.1| putative conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 591 Score = 43.8 bits (101), Expect = 0.039, Method: Composition-based stats. Identities = 38/351 (10%), Positives = 76/351 (21%), Gaps = 76/351 (21%) Query: 38 WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97 + W E + H N+ I R IG T A+ Sbjct: 126 YKKNDISSLTQEDFDTWAEEHLFEYQKHLRRNIGQLVRN-----ILKSRQIGATWYFAFE 180 Query: 98 MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 I A+ + AE + + +F + Sbjct: 181 AFENAVMTGDPQIFLSASK-------VQAEYFRSYIVNIAEQYFGITLTGNPIRLSNGAE 233 Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFF 215 L + T ++YS ++ DE P+ +N+ Sbjct: 234 LRFLSTNKN-----TAQSYSGH---------------LYCDEYFWVPNFTKLNEVASAMA 273 Query: 216 TELNPNRFWIMTSNTRRLNG-----WFYDIFNIPLEDWKRYQIDTRT--------VEGID 262 T S W D + + + T Sbjct: 274 THDKWRT--TYFSTPSAKTHQAYPFWTGDEWKRGSKKRTAIKFPTFDELRDGGRVCPDGQ 331 Query: 263 SGFHEGIISRYGL--------------DSDVARIEILGQFPQQEVNNFIPHNYIEEA--- 305 + + ++ + + F ++ + +E Sbjct: 332 WRYVITMEDAIAGGFNLANIDKLRNRYNTATFNMLYMCVFVD-SKDSVFSFSDLEACGVE 390 Query: 306 --MSREAIDDLYAPL----IMG-CDIAGEGGDKTVVVFRRGNIIEHIFDWS 349 ++ D P + G D A G D + V + + + Sbjct: 391 VDTWQDHNPDAARPFGDRPVWGGFDPARSG-DLSCFVIV-APPMFAVEKFR 439 >gi|320035817|gb|EFW17757.1| DEAD/DEAH box helicase [Coccidioides posadasii str. Silveira] Length = 1970 Score = 43.8 bits (101), Expect = 0.039, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 29/125 (23%), Gaps = 14/125 (11%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + G GKT M W +PG ++ IA + ++ V W L Sbjct: 1150 NVLLGSPTGSGKTVAAELAMWWAFREKPGSKVVYIAPMKALVRER----VQDWRRRLAMP 1205 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN--THGMAVF 196 ++ L I + V Sbjct: 1206 LGLKLVEL--------TGDNTPDTRTIRNADIIITTPEKWDGISRSWQTRGYVRQVSLVI 1257 Query: 197 NDEAS 201 DE Sbjct: 1258 IDEIH 1262 >gi|303321375|ref|XP_003070682.1| activating signal cointegrator 1 complex subunit, putative [Coccidioides posadasii C735 delta SOWgp] gi|240110378|gb|EER28537.1| activating signal cointegrator 1 complex subunit, putative [Coccidioides posadasii C735 delta SOWgp] Length = 1970 Score = 43.8 bits (101), Expect = 0.039, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 29/125 (23%), Gaps = 14/125 (11%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + G GKT M W +PG ++ IA + ++ V W L Sbjct: 1150 NVLLGSPTGSGKTVAAELAMWWAFREKPGSKVVYIAPMKALVRER----VQDWRRRLAMP 1205 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN--THGMAVF 196 ++ L I + V Sbjct: 1206 LGLKLVEL--------TGDNTPDTRTIRNADIIITTPEKWDGISRSWQTRGYVRQVSLVI 1257 Query: 197 NDEAS 201 DE Sbjct: 1258 IDEIH 1262 >gi|156847546|ref|XP_001646657.1| hypothetical protein Kpol_1028p75 [Vanderwaltozyma polyspora DSM 70294] gi|156117336|gb|EDO18799.1| hypothetical protein Kpol_1028p75 [Vanderwaltozyma polyspora DSM 70294] Length = 1982 Score = 43.8 bits (101), Expect = 0.039, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 45/159 (28%), Gaps = 14/159 (8%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + + G GKT + A + +W PG I+ IA + ++ V W + Sbjct: 1161 NVFVGSPTGSGKT-VVAELAIWHAFRDFPGKKIVYIAPMKALVRER----VDDWRKRI-- 1213 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + + + + + D+ T + + + V Sbjct: 1214 ---TPVTGDRVVELTGDSLPDPKDVR-DATIVITTPEKFDGISRNWQTRKFVQNISLVIM 1269 Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236 DE + N TSN RL G Sbjct: 1270 DEIHLLASDRGPILE--MIVSRMNYIASQTSNPIRLLGM 1306 >gi|119180556|ref|XP_001241737.1| hypothetical protein CIMG_08900 [Coccidioides immitis RS] Length = 1970 Score = 43.8 bits (101), Expect = 0.039, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 29/125 (23%), Gaps = 14/125 (11%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + G GKT M W +PG ++ IA + ++ V W L Sbjct: 1150 NVLLGSPTGSGKTVAAELAMWWAFREKPGSKVVYIAPMKALVRER----VQDWRRRLAMP 1205 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN--THGMAVF 196 ++ L I + V Sbjct: 1206 LGLKLVEL--------TGDNTPDTRTIRNADIIITTPEKWDGISRSWQTRGYVRQVSLVI 1257 Query: 197 NDEAS 201 DE Sbjct: 1258 IDEIH 1262 >gi|315038684|ref|YP_004032252.1| phage terminase, large subunit, PBSX family [Lactobacillus amylovorus GRL 1112] gi|312276817|gb|ADQ59457.1| phage terminase, large subunit, PBSX family [Lactobacillus amylovorus GRL 1112] Length = 418 Score = 43.8 bits (101), Expect = 0.040, Method: Composition-based stats. Identities = 29/261 (11%), Positives = 83/261 (31%), Gaps = 36/261 (13%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAEVSKWLSML 135 GRG K+++ + ++ ++ +++ICI ++ L+++++ ++ + +L Sbjct: 9 IVCKGGRGSFKSSVISLKLVTMMMKYIQQGKTVNVICIRENQQYLRDSVYNQILWAMDIL 68 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT---HG 192 + F + + + +T T+ + + + + Sbjct: 69 HVSNEFRTRVSPMVI-----------------THKLTGSTFYFYGANDPMKLKSNIVGNV 111 Query: 193 MAVFNDEASGTPD-IINKSILGFFTEL----NPNRFWIMTSNTRRLNGWFYDIFNIPL-- 245 +A + +E + + + + F ++ N R + + + Sbjct: 112 IACWFEEFANLKNVDVFDQSVPTFIRQKPDFTDQVKIYISYNPPRNPYAWVNEWVTQREV 171 Query: 246 -EDWKRYQIDTRT--VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302 +D+ + + I D D R LG+ N + Sbjct: 172 DDDYFIDSSTYLDDELGFTTKQQLKLINQYKKNDPDYYRWLYLGE-AVGLGTNVYNMDLF 230 Query: 303 EEAMSREAIDDLYAPLIMGCD 323 + + D+ +I G D Sbjct: 231 KV-VDHIPDDEYLTDIIYGLD 250 >gi|209883302|ref|YP_002287159.1| hypothetical protein OCAR_4144 [Oligotropha carboxidovorans OM5] gi|209871498|gb|ACI91294.1| hypothetical protein OCAR_4144 [Oligotropha carboxidovorans OM5] Length = 651 Score = 43.8 bits (101), Expect = 0.040, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 43/130 (33%), Gaps = 10/130 (7%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS---- 133 ++ +SA G GK++ + ++T S++ + + Q ++ + E+S L Sbjct: 80 YRV-VSAPTGSGKSSFAQAFIKGYLATNYDASVLYLVETIDQAEDV-FNEMSNLLDEDSV 137 Query: 134 --MLPHRHWFEMQSLSLHPSGWYAELLEQSMG--IDSKHYTITCRTYSEERPDTFVGPHN 189 W S L + + + +T Y R D V Sbjct: 138 AVWTSAHDWNANTSEDLMEEYGFIPTMRFKLEELGSYPVAIVTHNFYRGSRADQAVVYKG 197 Query: 190 THGMAVFNDE 199 +F DE Sbjct: 198 RDRKLIFVDE 207 >gi|154294033|ref|XP_001547460.1| hypothetical protein BC1G_14050 [Botryotinia fuckeliana B05.10] gi|150845095|gb|EDN20288.1| hypothetical protein BC1G_14050 [Botryotinia fuckeliana B05.10] Length = 2018 Score = 43.8 bits (101), Expect = 0.040, Method: Composition-based stats. Identities = 15/123 (12%), Positives = 33/123 (26%), Gaps = 10/123 (8%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + G GKT M W +PG ++ IA + ++ + ++ + + Sbjct: 1163 NVLLGSPTGSGKTIACELAMWWAFREKPGSKVVYIAPMKALVRERVKDWGARLTRQMGLK 1222 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 E+ + + + + T V D Sbjct: 1223 -LVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWTTRGYV---------RQVSLVIID 1272 Query: 199 EAS 201 E Sbjct: 1273 EIH 1275 >gi|83765962|dbj|BAE56105.1| unnamed protein product [Aspergillus oryzae] Length = 1482 Score = 43.8 bits (101), Expect = 0.040, Method: Composition-based stats. Identities = 30/274 (10%), Positives = 76/274 (27%), Gaps = 37/274 (13%) Query: 39 GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98 G P + +P +WQ E ++ +D + A GKT ++ + + Sbjct: 554 GSAPDPRVYDFEPDKWQREILDQIDA------------RKSLFVVAPTSAGKTFISFYAI 601 Query: 99 LWLISTRPGMSIICIANSETQLKNTLWAEVSKW--------------LSMLPHRHWFEMQ 144 ++ I+ +A ++ + +++ L++ P W Sbjct: 602 KQILEDDNEGVIVYVAPTKALVNQIAAEVQARFSKNFKETGKGIPNDLTLEPRDCWTLWN 661 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD--------TFVGPHNTHGMAVF 196 ++ + + + + + + E + Sbjct: 662 AMEKYKTAQFPVDESLNPSLALPAFICKANIIQWEAKLKALLKCWMNDDKSPFDAVLNEL 721 Query: 197 NDEASGTPDIINKSILGFFTELNPNRFW---IMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253 + E + G ++ + R + T L +D +P + + Sbjct: 722 SYELQIKGQESFQVSSGIISQSDNKRELKRNSILDTTLPLICSLHDQGALPALFFNYDRS 781 Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287 + + SR+ S +ILG Sbjct: 782 HCERICHHLLSQLKEEESRWKASSSAWANDILGW 815 >gi|328552365|gb|AEB22857.1| ATP-dependent RNA helicase [Bacillus amyloliquefaciens TA208] gi|328910714|gb|AEB62310.1| putative ATP-dependent RNA helicase [Bacillus amyloliquefaciens LL3] Length = 376 Score = 43.8 bits (101), Expect = 0.040, Method: Composition-based stats. Identities = 29/240 (12%), Positives = 60/240 (25%), Gaps = 28/240 (11%) Query: 31 FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90 F+ P+ + F +P Q + + + + G GK Sbjct: 7 FLQHTQPFIAENWEASGFQEPTVIQEKAAQVIMEGKD------------VIAESPTGTGK 54 Query: 91 TTLNAWMMLWLISTRPGMS---IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147 T A+ + L P +I +A S + + W + L Sbjct: 55 T--LAYTLPVLERINPEQKHPQVIILAPSRELVMQIFQ----------VIQDWKKGSDLR 102 Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG-TPDI 206 A + +Q + +K + I + DEA Sbjct: 103 ALSLIGGANVKKQVEKLKNKPHIIAGTPGRVLELIQAKKLKMHEVKTIVLDEADQLVTKE 162 Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFH 266 +++ +R + S T + R + +T + + Sbjct: 163 HRETMKKIIKTTLRDRQLLSFSATLQPETEEVLNAIAHEPSVLRVKRNTEEKARVTHQYL 222 >gi|224418675|ref|ZP_03656681.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Helicobacter canadensis MIT 98-5491] gi|253826788|ref|ZP_04869673.1| ATP-dependent RNA helicase DeaD [Helicobacter canadensis MIT 98-5491] gi|313142197|ref|ZP_07804390.1| ATP-dependent RNA helicase [Helicobacter canadensis MIT 98-5491] gi|253510194|gb|EES88853.1| ATP-dependent RNA helicase DeaD [Helicobacter canadensis MIT 98-5491] gi|313131228|gb|EFR48845.1| ATP-dependent RNA helicase [Helicobacter canadensis MIT 98-5491] Length = 505 Score = 43.8 bits (101), Expect = 0.040, Method: Composition-based stats. Identities = 31/244 (12%), Positives = 60/244 (24%), Gaps = 29/244 (11%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 KG F +P Q E + + A G GKT A ++ Sbjct: 22 KGIDEAGFKEPSPIQKEVIPVILDGLD------------VIAQAQTGTGKTAAFALPLIN 69 Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 + + ++ +A + + EV K + + + Q Sbjct: 70 ELRHDGSIEVLIVAPTRELVMQI-GDEVFK---------LGKYNKVRTVSLFGGQPIRRQ 119 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFT--E 217 ++ K + + V DE+ I FT Sbjct: 120 IELLEKKPQIVIATPGRLLDHLRNGRLKDFDPRVVVLDESDEMLDMGFLDDIEEIFTYLS 179 Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277 + + + I + P K ++ D II+ + Sbjct: 180 SDRQTLLFSATMPTPIKHLAQKILHNP----KLIKVTPSDTTNQDISQRYYIINEQERED 235 Query: 278 DVAR 281 + R Sbjct: 236 AIVR 239 >gi|182417842|ref|ZP_02949156.1| putative phage terminase, large subunit [Clostridium butyricum 5521] gi|237667920|ref|ZP_04527904.1| putative phage terminase, large subunit [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378305|gb|EDT75837.1| putative phage terminase, large subunit [Clostridium butyricum 5521] gi|237656268|gb|EEP53824.1| putative phage terminase, large subunit [Clostridium butyricum E4 str. BoNT E BL5262] Length = 560 Score = 43.8 bits (101), Expect = 0.040, Method: Composition-based stats. Identities = 29/276 (10%), Positives = 73/276 (26%), Gaps = 18/276 (6%) Query: 86 RGIGKTTLNA-WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R KT + +L +++ + I ++ + V + F Sbjct: 114 RKNAKTAVVGLIFLLLMLTEQDYSEFYSICLTKELAAEIRKSMVQILEASPLIAKHFTWS 173 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + P + R + + N++ A+ + + + Sbjct: 174 KTKIGPIECKITKSFFQPRTAESGKNNSIRPSAFVSDEHGNFKDNSNFTAMKSGQKNVIN 233 Query: 205 DIIN-----KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 ++ +I + + T + ++ E + Sbjct: 234 PLVFRTTTAYAIDNSIMTPDIETIRKVFDGTFKNERQLALLYYSEEEHLWDDIGMYQANP 293 Query: 260 GIDSGFHEGIISRYGLDS------DVARIEILGQF-PQQEVNNFIPHNYIEEAMSREAID 312 + I + + + F P+ +++ I+ + E I+ Sbjct: 294 LRIEENYNTIREDREKALIQENLVEEYLTKSMNYFMPENSGESYVTEEQIKACEADEDIN 353 Query: 313 DLYAPLIMGCDIAGEGGDKTVVVFR----RGNIIEH 344 + +G D+A D T + GNII Sbjct: 354 WEGREVYVGVDLAET-DDNTAISMVAEDDDGNIITK 388 >gi|330791351|ref|XP_003283757.1| hypothetical protein DICPUDRAFT_147464 [Dictyostelium purpureum] gi|325086380|gb|EGC39771.1| hypothetical protein DICPUDRAFT_147464 [Dictyostelium purpureum] Length = 1580 Score = 43.8 bits (101), Expect = 0.040, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 47/172 (27%), Gaps = 16/172 (9%) Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR----PGMSIICIANSETQ 119 N+ NS + G GKT A ++L + + I + + Sbjct: 1076 TPSQENIFNSIIKRRLQLVRGPPGTGKTHFLALIVLIFMESYKRLGKPFRIAITSFTHNA 1135 Query: 120 LKNTLWAE--VSKWLSML----PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173 + N L + K S + F+ Q+ L + +H+ + Sbjct: 1136 IDNLLIRIASLKKEYSTSVGQDINFPLFKKQTKLSEDLKLNKIQLFDKKEFEREHFCVGA 1195 Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225 ++S D + + DEAS I + Sbjct: 1196 TSWSLSNMD------YENFDLLIIDEASQLSSYIGAIPFSRLNKDTGRVIVC 1241 >gi|260579063|ref|ZP_05846962.1| SNF2 domain protein [Corynebacterium jeikeium ATCC 43734] gi|258602814|gb|EEW16092.1| SNF2 domain protein [Corynebacterium jeikeium ATCC 43734] Length = 453 Score = 43.8 bits (101), Expect = 0.040, Method: Composition-based stats. Identities = 36/279 (12%), Positives = 75/279 (26%), Gaps = 36/279 (12%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT--TLNAWMMLWLISTRPG 107 +PH +Q + + V+ H + I G G+GKT TL A L L+ + Sbjct: 4 EPHDYQRQATQFVEDHPQA------------VILLGMGLGKTVITLTAIWNL-LLDSFQA 50 Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 ++ +A ++T AE +KW + + S S AE + + ++ Sbjct: 51 RRVLIVAP-LRVARDTWPAEATKWDHLAGLTIAVAVGSKSQRVDALAAEAMVTVINRENV 109 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227 + + + +T+ V DE S + + + Sbjct: 110 PWLV------KHLGNTW------PFDMVVIDELSSFKNHRAQRFKALAAVRPRLTRIVGL 157 Query: 228 SNTRRLNGWFYDIFNI--------PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279 + T NG Y+ + + G + ++ Sbjct: 158 TGTPAANGLMDLWAQFRLLDEGQRLGRFITHYRNRWFVPDRRNGQQIFTYKPAPGAEDEI 217 Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318 + + + Sbjct: 218 YEAISDITLSMRTTDYLRLPELTVTTTLVDLEPKERKAY 256 >gi|330917073|ref|XP_003297665.1| hypothetical protein PTT_08155 [Pyrenophora teres f. teres 0-1] gi|311329501|gb|EFQ94223.1| hypothetical protein PTT_08155 [Pyrenophora teres f. teres 0-1] Length = 2004 Score = 43.8 bits (101), Expect = 0.041, Method: Composition-based stats. Identities = 14/123 (11%), Positives = 31/123 (25%), Gaps = 10/123 (8%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + G GKT M W +PG ++ IA + ++ + + + + Sbjct: 1157 NVLLGSPTGSGKTVAAELAMWWAFREKPGSKVVYIAPMKALVRERVQDWGKRLAGPMGLK 1216 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 E+ + + + + V D Sbjct: 1217 -LVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRGYV---------RQVSLVIID 1266 Query: 199 EAS 201 E Sbjct: 1267 EIH 1269 >gi|189204466|ref|XP_001938568.1| activating signal cointegrator 1 complex subunit 3 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187985667|gb|EDU51155.1| activating signal cointegrator 1 complex subunit 3 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 1810 Score = 43.8 bits (101), Expect = 0.041, Method: Composition-based stats. Identities = 14/123 (11%), Positives = 31/123 (25%), Gaps = 10/123 (8%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + G GKT M W +PG ++ IA + ++ + + + + Sbjct: 972 NVLLGSPTGSGKTVAAELAMWWAFREKPGSKVVYIAPMKALVRERVQDWGKRLAGPMGLK 1031 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 E+ + + + + V D Sbjct: 1032 -LVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRGYV---------RQVSLVIID 1081 Query: 199 EAS 201 E Sbjct: 1082 EIH 1084 >gi|170288816|ref|YP_001739054.1| CRISPR-associated HD domain-containing protein [Thermotoga sp. RQ2] gi|170176319|gb|ACB09371.1| CRISPR-associated HD domain protein [Thermotoga sp. RQ2] Length = 721 Score = 43.8 bits (101), Expect = 0.041, Method: Composition-based stats. Identities = 25/190 (13%), Positives = 53/190 (27%), Gaps = 16/190 (8%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 + Q++ + + N P + +I+A GIGKT A ++ I Sbjct: 220 RKNQIDSLRW---RFQDEILNFKPERGRIYSITAPTGIGKT--LANLLFAGHLADEDTII 274 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 I N + V K + F + + Y E + + + ++ Sbjct: 275 IYALPFI----NIIEQTVDKIKEIFETEDPFFVLPFHHLANPVYEEADKYEDLLMNLWHS 330 Query: 171 ITCRTYSEERPDTFVGPHN------THGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224 T ++ + + DE P + L+ Sbjct: 331 RVIVTTFVSLLESLITFRKIPFFYKFPKAVLILDEVQAIPHEYWTPVEKTVEFLSKMGTT 390 Query: 225 IMTSNTRRLN 234 ++ S + Sbjct: 391 VLLSTATKPA 400 >gi|114331461|ref|YP_747683.1| phage terminase [Nitrosomonas eutropha C91] gi|114308475|gb|ABI59718.1| phage Terminase [Nitrosomonas eutropha C91] Length = 557 Score = 43.8 bits (101), Expect = 0.041, Method: Composition-based stats. Identities = 39/320 (12%), Positives = 78/320 (24%), Gaps = 58/320 (18%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 WQ + ++ V+ F+ A +S G+G GK+ L A + L+ + Sbjct: 72 DWQAFIVGSLF----GWVDVEGLRRFRVAYVSTGKGSGKSPLAAAVGLYGLVADGEARAE 127 Query: 112 C--IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 C A + Q V+ R + Sbjct: 128 CYSAATKKDQAMILFRDAVAMVDQSAILRDAL------IKSGKGSTVWNLAYHK------ 175 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 + + D DE + ++ T+ M +N Sbjct: 176 --SGSFFRPISSDDGQS--GPRPHIALIDEIHEHKNNFVVEMMRAGTKSRRQALIFMITN 231 Query: 230 T-RRLNGWFYDIFNIPL---------EDWKRYQI------------DTRTVEGIDSGF-- 265 + G +D + + Y F Sbjct: 232 SGSDKTGPCWDYHTYGTQVASGQLTDDSFFSYICALDEGDDPINDESCWDKANPSLRFGL 291 Query: 266 ------HEGIISRYGLDSDVARIEIL--GQFPQQEVNNFIPHN-YIEEAMSREAIDDLYA 316 E + G+ S A + L ++ +I + +++ + + Sbjct: 292 PGYRYIREQVREAKGMPSKEAVVRRLNFCEW-TGADAPWISADVWMDARRDYDWRNLRSR 350 Query: 317 PLIMGCDIAGEGGDKTVVVF 336 G D+ D T +V Sbjct: 351 RAWGGLDLGST-TDLTGLVL 369 >gi|326918311|ref|XP_003205433.1| PREDICTED: probable ATP-dependent RNA helicase DDX60-like [Meleagris gallopavo] Length = 1887 Score = 43.8 bits (101), Expect = 0.041, Method: Composition-based stats. Identities = 33/260 (12%), Positives = 76/260 (29%), Gaps = 30/260 (11%) Query: 31 FVMRFFPWGIKGKPLEHFSQ--PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGI 88 ++ + + P P WQ E ++AVD + + I A Sbjct: 869 YMDYYLLREERNDPDPRVQHFIPDTWQRELLDAVDNNESA------------VIVAPTSS 916 Query: 89 GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148 GKT + + M ++ T ++ +A ++ + + + S++ LP + + Sbjct: 917 GKTYASYYCMEKVLKTSDEGVVVYVAPTKALVNQVVGSVYSRFTKKLPDG----LVVCGV 972 Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS----GTP 204 + +++ + + + T V DE Sbjct: 973 FTRDYRHDVMNSQILVTVPQCLEILMLSPHHQSWT------KRIQYVIFDEIHCLGGEIG 1026 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264 + + +L SN L W + + + + E +G Sbjct: 1027 AEVWEHLLVTIRCP-FLALSATISNPDHLTEWLQSVKRYWQCADNKIKGGSTDSEKNFAG 1085 Query: 265 FHEGIISRYGLDSDVARIEI 284 ++G S R+ + Sbjct: 1086 KYKG-RSTVREQKKSYRVRL 1104 >gi|154506189|ref|ZP_02042927.1| hypothetical protein RUMGNA_03731 [Ruminococcus gnavus ATCC 29149] gi|210612077|ref|ZP_03289163.1| hypothetical protein CLONEX_01362 [Clostridium nexile DSM 1787] gi|153793688|gb|EDN76108.1| hypothetical protein RUMGNA_03731 [Ruminococcus gnavus ATCC 29149] gi|210151739|gb|EEA82746.1| hypothetical protein CLONEX_01362 [Clostridium nexile DSM 1787] Length = 721 Score = 43.8 bits (101), Expect = 0.041, Method: Composition-based stats. Identities = 25/212 (11%), Positives = 56/212 (26%), Gaps = 17/212 (8%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + HC S +F+ + G GKT + L +I + + + Sbjct: 221 EILKHCLE-EGRSERGLFRLTV--PTGGGKTIASLAFALRHAVENQMDRVIYVIPYTSII 277 Query: 121 KN--TLWAEVSKWLSMLPHRHWFEMQSLSLH---PSGWYAELLEQSMGIDSKHYTITCRT 175 + ++ E+ ++L + + S + + Sbjct: 278 EQNAKVFREILGDENVLENHCNIAYEVDSQRAEELQPMQLAAENWDKPVVVTTNVQFFES 337 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF---FTELNPNRFWIMTSNTRR 232 +P HN + DEA P+ K + + T+ Sbjct: 338 LFANKPSKCRKLHNIANSVIIFDEAQMLPNDYLKPCIAMIEELLNNYKTSVVLCTATQPA 397 Query: 233 LNGWFY------DIFNIPLEDWKRYQIDTRTV 258 L +F ++ E + ++ Sbjct: 398 LKSFFQSEVLATELCPRMDEQFHFFKRTLFEN 429 >gi|91085743|ref|XP_973670.1| PREDICTED: similar to CG7922 CG7922-PA [Tribolium castaneum] Length = 1401 Score = 43.8 bits (101), Expect = 0.041, Method: Composition-based stats. Identities = 19/196 (9%), Positives = 48/196 (24%), Gaps = 15/196 (7%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 +S G+GKT + A +M P +I +A + +K + +++ Sbjct: 57 NTLVSLPTGLGKTFIAAVVMYNFYRWYPHDKVIFMAPTRPLVKQQM----DACYNIMAIP 112 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + E+ + + + + D Sbjct: 113 QEVTAELTGTKIQQSRTEIWQ-------NKRVFFITPQVLQNDLNIIVELGPKIKCLVFD 165 Query: 199 EASGTPDIIN--KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256 EA + + E R +++ + D+ + + Sbjct: 166 EAHRAKGNHAYCEVVRKLLPENKLFRVLALSATPGNSSKDVLDVMRNL--LIAHLEFRSE 223 Query: 257 TVEGIDSGFHEGIISR 272 + E + Sbjct: 224 ESPDVKPYVFERALET 239 >gi|66394878|ref|YP_239721.1| ORF008 [Staphylococcus phage 85] gi|148267321|ref|YP_001246264.1| PBSX family phage terminase large subunit [Staphylococcus aureus subsp. aureus JH9] gi|150393373|ref|YP_001316048.1| PBSX family phage terminase large subunit [Staphylococcus aureus subsp. aureus JH1] gi|189427164|ref|YP_001949840.1| putative terminase, large subunit [Staphylococcus phage phiMR25] gi|257793419|ref|ZP_05642398.1| phage terminase, large subunit [Staphylococcus aureus A9781] gi|258418133|ref|ZP_05682398.1| phage terminase [Staphylococcus aureus A9763] gi|258422108|ref|ZP_05685021.1| phage terminase large subunit [Staphylococcus aureus A9719] gi|258448907|ref|ZP_05697016.1| phage terminase [Staphylococcus aureus A6224] gi|258453887|ref|ZP_05701859.1| phage terminase large subunit [Staphylococcus aureus A5937] gi|282929085|ref|ZP_06336666.1| phage terminase large subunit [Staphylococcus aureus A10102] gi|295406591|ref|ZP_06816397.1| phage terminase large subunit [Staphylococcus aureus A8819] gi|297245317|ref|ZP_06929191.1| phage terminase large subunit [Staphylococcus aureus A8796] gi|62635807|gb|AAX90918.1| ORF008 [Staphylococcus phage 85] gi|147740390|gb|ABQ48688.1| phage terminase, large subunit, PBSX family [Staphylococcus aureus subsp. aureus JH9] gi|149945825|gb|ABR51761.1| phage terminase, large subunit, PBSX family [Staphylococcus aureus subsp. aureus JH1] gi|189339075|dbj|BAG48139.1| putative terminase, large subunit [Staphylococcus phage phiMR25] gi|257787391|gb|EEV25731.1| phage terminase, large subunit [Staphylococcus aureus A9781] gi|257838926|gb|EEV63405.1| phage terminase [Staphylococcus aureus A9763] gi|257841903|gb|EEV66339.1| phage terminase large subunit [Staphylococcus aureus A9719] gi|257857803|gb|EEV80695.1| phage terminase [Staphylococcus aureus A6224] gi|257863752|gb|EEV86508.1| phage terminase large subunit [Staphylococcus aureus A5937] gi|282589277|gb|EFB94371.1| phage terminase large subunit [Staphylococcus aureus A10102] gi|285816567|gb|ADC37054.1| Phage terminase, large subunit [Staphylococcus phage phiSaST5K] gi|294968736|gb|EFG44759.1| phage terminase large subunit [Staphylococcus aureus A8819] gi|297177988|gb|EFH37237.1| phage terminase large subunit [Staphylococcus aureus A8796] gi|315128310|gb|EFT84329.1| phage terminase, large subunit, PBSX family protein [Staphylococcus aureus subsp. aureus CGS03] Length = 431 Score = 43.8 bits (101), Expect = 0.041, Method: Composition-based stats. Identities = 40/270 (14%), Positives = 75/270 (27%), Gaps = 24/270 (8%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 N ++ + RG K+ A +++ I +I+ + K + + ++ Sbjct: 20 HNKNFYRV-VKGSRGSKKSKTTAINLIYRIMKYDWANILVVRRFSNTNKQSTYTDLKWAT 78 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 + L H F+ + I R + T + Sbjct: 79 NQLGVAHLFKFNES------------LPEITYKPTGQKILFRGLDDPLKITSITVDTGIL 126 Query: 193 MAVFNDEASGTPD-----IINKSILGFFTELNPNRFWIMTSNTRRLNGW---FYDIFNIP 244 + +EA + +SI G + + +T N W + Sbjct: 127 CWAWFEEAYQIETFAKFSTVVESIRGSYDSPEFFKQITVTFNPWSERHWLKPTFFDEETK 186 Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE 304 L + R E +D E Y + ARI G + + +E+ Sbjct: 187 LNNTFSDTTTYRVNEWLDKVDIERYEDLYIKNPRRARIVCDGDW-GVAEGLVFDNFKVED 245 Query: 305 AMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334 E + G D G D T V Sbjct: 246 FDWFE-EFKRTQEITHGMDF-GFSQDPTTV 273 >gi|323481151|gb|ADX80590.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis 62] Length = 422 Score = 43.8 bits (101), Expect = 0.042, Method: Composition-based stats. Identities = 28/253 (11%), Positives = 71/253 (28%), Gaps = 23/253 (9%) Query: 94 NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153 A +++ + R ++ + I + ++ +++ ++ + +F++ + Sbjct: 42 IAHIIV-QLIMRYPVNAVAIRYVDNTIELSIFEQIKWAIEEQGVSKYFKVNKSPMK---- 96 Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSIL 212 + + I R + + +E A + K+I Sbjct: 97 --------ITYKPRGNYIVFRGAQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTIT 148 Query: 213 GFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDWKRYQIDTRTVEGIDSGF 265 + + N R W + E+ + + I F Sbjct: 149 NSLLRGELADGLFYKFFYSYNPPKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAF 208 Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325 E + + + A E G+ V F I+ + + + + + G D Sbjct: 209 IEEVNATRAKNPKRAEWEYDGKAIGSGVVPFDNLRVIKGCI-TDEMAANFDNIRNGLDF- 266 Query: 326 GEGGDKTVVVFRR 338 G D V Sbjct: 267 GYATDPLAFVRWH 279 >gi|315127597|ref|YP_004069600.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. SM9913] gi|315016111|gb|ADT69449.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. SM9913] Length = 408 Score = 43.8 bits (101), Expect = 0.042, Method: Composition-based stats. Identities = 19/234 (8%), Positives = 47/234 (20%), Gaps = 22/234 (9%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-----SII 111 + SA G GKT + + P ++ Sbjct: 18 KMGYETPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAIQYLMDFPRRDPGFARVL 77 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + + + + +L + L + ++ + + Sbjct: 78 IMTPTRELAYQ-----IHEQCELLAKQ-----TQLKIGVVTGGINYGTHKEIFENNNDIL 127 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 H + + DEA D+ + + + NR + Sbjct: 128 IATPGRLMEYLETENFHAENVEMLILDEADRMLDMGFRKEMLRICDEAKNRRQCFLFSAT 187 Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285 L D + + + R ++ Sbjct: 188 LEGDSVELFAERILNDPALLE---AESSRKEKAKIHQWVHLADD----YRHKLE 234 >gi|308172603|ref|YP_003919308.1| ATP-dependent RNA helicase [Bacillus amyloliquefaciens DSM 7] gi|307605467|emb|CBI41838.1| putative ATP-dependent RNA helicase [Bacillus amyloliquefaciens DSM 7] Length = 376 Score = 43.8 bits (101), Expect = 0.042, Method: Composition-based stats. Identities = 28/240 (11%), Positives = 60/240 (25%), Gaps = 28/240 (11%) Query: 31 FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90 F+ P+ + F +P Q + + + + G GK Sbjct: 7 FLQHTQPFIAENWEASGFQEPTVIQEKAAQVIMEGKD------------VIAESPTGTGK 54 Query: 91 TTLNAWMMLWLISTRPGMS---IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147 T A+ + L P +I +A S + + W + L Sbjct: 55 T--LAYTLPVLERINPEQKHPQVIILAPSRELVMQIFQ----------VIQDWKKGSDLR 102 Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG-TPDI 206 A + +Q + +K + I + DEA Sbjct: 103 ALSLIGGANVKKQVEKLKNKPHIIAGTPGRVLELIQAKKLKMHEVKTIVLDEADQLVTKE 162 Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFH 266 +++ +R + S T + + + +T + + Sbjct: 163 HRETMKKIIKTTLRDRQLLSFSATLQPETEEVLNEIAHEPAVLKVKRNTEEKARVTHQYL 222 >gi|23465319|ref|NP_695922.1| helicase [Bifidobacterium longum NCC2705] gi|23325959|gb|AAN24558.1| probable helicase [Bifidobacterium longum NCC2705] Length = 863 Score = 43.8 bits (101), Expect = 0.042, Method: Composition-based stats. Identities = 38/268 (14%), Positives = 67/268 (25%), Gaps = 24/268 (8%) Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 + N++ ++A G GKT + A ++L R + + Sbjct: 48 DDFQTEANDALEAGSNVLVAAPTGAGKT-VVADFAIYLAQER-NVKAFYTTPIKALSNQK 105 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 V + P + S++ + + + ER T Sbjct: 106 YHDLVDVY---GPDKVGLLTGDTSINSEADIVVMTTEVLRN-----------MLYERSTT 151 Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM-TSNTRRLNGWFYDIFN 242 V DE D + P I+ S T F + Sbjct: 152 LNALR-----YVILDEVHYLADRFRGPVWEEVIIHLPKTVKIVGLSATVSNVEDFSNWIA 206 Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH--N 300 D K + R V + D+ R + G+ + I Sbjct: 207 SVRGDTKLVISEHRPVPLEQHVIVQADEHTEPEVLDLYRRDGNGEQATKLNAELINRLDQ 266 Query: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEG 328 +A R + G D G+G Sbjct: 267 LDRKAARRRGEERPDKRKGFGRDRGGKG 294 >gi|282852128|ref|ZP_06261485.1| DEAD/DEAH box helicase [Lactobacillus gasseri 224-1] gi|282556692|gb|EFB62297.1| DEAD/DEAH box helicase [Lactobacillus gasseri 224-1] Length = 415 Score = 43.8 bits (101), Expect = 0.042, Method: Composition-based stats. Identities = 29/229 (12%), Positives = 61/229 (26%), Gaps = 23/229 (10%) Query: 42 GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101 G +FS+P + Q + A+ + + A G GKT +L + Sbjct: 23 GLEKINFSKPTKVQAAVIPALLSNKS------------VVVQAATGSGKTHAYLLPLLNM 70 Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161 I ++ + +L N L+ + R + + G + Sbjct: 71 IDENAPVTQAVVTAPSRELANQLYKVARQ------LRDASGLNISIEYLGGGNDRNRQIE 124 Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG-TPDIINKSILGFFTELNP 220 + I + + + A DEA + ++L+ Sbjct: 125 KAENRAPQLIIATPGRLHDFASKKVINLDNVKAFIIDEADMTLDMGFLSQMDEIISKLDK 184 Query: 221 NRFWIMTSN--TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267 S +L + + P D+ I + + Sbjct: 185 KVVLGAFSATIPVKLENFLRKYMSKP--DFIVIDNPAIIAPTIQNDLID 231 >gi|116629091|ref|YP_814263.1| superfamily II DNA/RNA helicase [Lactobacillus gasseri ATCC 33323] gi|238853834|ref|ZP_04644199.1| dead/deah box helicase domain protein [Lactobacillus gasseri 202-4] gi|116094673|gb|ABJ59825.1| Superfamily II DNA and RNA helicase [Lactobacillus gasseri ATCC 33323] gi|238833529|gb|EEQ25801.1| dead/deah box helicase domain protein [Lactobacillus gasseri 202-4] Length = 464 Score = 43.8 bits (101), Expect = 0.042, Method: Composition-based stats. Identities = 29/229 (12%), Positives = 61/229 (26%), Gaps = 23/229 (10%) Query: 42 GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101 G +FS+P + Q + A+ + + A G GKT +L + Sbjct: 23 GLEKINFSKPTKVQAAVIPALLSNKS------------VVVQAATGSGKTHAYLLPLLNM 70 Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161 I ++ + +L N L+ + R + + G + Sbjct: 71 IDENAPVTQAVVTAPSRELANQLYKVARQ------LRDASGLNISIEYLGGGNDRNRQIE 124 Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG-TPDIINKSILGFFTELNP 220 + I + + + A DEA + ++L+ Sbjct: 125 KAENRAPQLIIATPGRLHDFASKKVINLDNVKAFIIDEADMTLDMGFLSQMDEIISKLDK 184 Query: 221 NRFWIMTSN--TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267 S +L + + P D+ I + + Sbjct: 185 KVVLGAFSATIPVKLENFLRKYMSKP--DFIVIDNPAIIAPTIQNDLID 231 >gi|311111123|ref|ZP_07712520.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus gasseri MV-22] gi|311066277|gb|EFQ46617.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus gasseri MV-22] Length = 461 Score = 43.8 bits (101), Expect = 0.042, Method: Composition-based stats. Identities = 29/229 (12%), Positives = 61/229 (26%), Gaps = 23/229 (10%) Query: 42 GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101 G +FS+P + Q + A+ + + A G GKT +L + Sbjct: 20 GLEKINFSKPTKVQAAVIPALLSNKS------------VVVQAATGSGKTHAYLLPLLNM 67 Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161 I ++ + +L N L+ + R + + G + Sbjct: 68 IDENAPVTQAVVTAPSRELANQLYKVARQ------LRDASGLNISIEYLGGGNDRNRQIE 121 Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG-TPDIINKSILGFFTELNP 220 + I + + + A DEA + ++L+ Sbjct: 122 KAENRAPQLIIATPGRLHDFASKKVINLDNVKAFIIDEADMTLDMGFLSQMDEIISKLDK 181 Query: 221 NRFWIMTSN--TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267 S +L + + P D+ I + + Sbjct: 182 KVVLGAFSATIPVKLENFLRKYMSKP--DFIVIDNPAIIAPTIQNDLID 228 >gi|300933478|ref|ZP_07148734.1| phage-associated protein [Corynebacterium resistens DSM 45100] Length = 453 Score = 43.8 bits (101), Expect = 0.042, Method: Composition-based stats. Identities = 36/279 (12%), Positives = 75/279 (26%), Gaps = 36/279 (12%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT--TLNAWMMLWLISTRPG 107 +PH +Q + + V+ H + I G G+GKT TL A L L+ + Sbjct: 4 EPHDYQRQATQFVEDHPQA------------VILLGMGLGKTVITLTAIWNL-LLDSFQA 50 Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 ++ +A ++T AE +KW + + S S AE + + ++ Sbjct: 51 RRVLIVAP-LRVARDTWPAEATKWDHLAGLTIAVAVGSKSQRVDALAAEAMVTVINRENV 109 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227 + + + +T+ V DE S + + + Sbjct: 110 PWLV------KHLGNTW------PFDMVVIDELSSFKNHRAQRFKALAAVRPRLTRIVGL 157 Query: 228 SNTRRLNGWFYDIFNI--------PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279 + T NG Y+ + + G + ++ Sbjct: 158 TGTPAANGLMDLWAQFRLLDEGQRLGRFITHYRNRWFVPDRRNGQQIFTYKPAPGAEDEI 217 Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318 + + + Sbjct: 218 YEAISDITLSMRTTDYLRLPELTVTTTLVDLEPKERKAY 256 >gi|257092005|ref|YP_003165646.1| ATP-dependent DNA helicase, RecQ family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044529|gb|ACV33717.1| ATP-dependent DNA helicase, RecQ family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 1741 Score = 43.8 bits (101), Expect = 0.042, Method: Composition-based stats. Identities = 27/211 (12%), Positives = 57/211 (27%), Gaps = 16/211 (7%) Query: 31 FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90 F+ R+ P K L + P W + +E ++ + + AG G GK Sbjct: 1072 FMRRWLPDR--DKELARQTTPQSW-HDIVEVLNNRQQREIVADERESTNVLVLAGPGSGK 1128 Query: 91 TTLNAWMMLWLISTRP--GMSIICIA---NSETQLKNTLWAEV-SKWLSMLPHRHWFEMQ 144 T + + +LI R I+ +A ++ Q++ L + + Sbjct: 1129 TRVLVHRIAYLIRVRRENPHGILALAYNRHAAVQIRQRLGELIGDDARGVAVLTLHALAM 1188 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT---HGMAVFNDEAS 201 L+ + + D + + P+ + DE Sbjct: 1189 RLAGASLATQNGGTDGDLFKDIIDQAVNLLKGKDLPPEEADQQRERLLVGFRWILVDEYQ 1248 Query: 202 GTPDIINKSILG----FFTELNPNRFWIMTS 228 + I + + Sbjct: 1249 DIAPEQYELISALAGRTRPDEDGRINLFAVG 1279 >gi|109638704|ref|YP_656576.1| putative ATPase subunit of terminase [Ranid herpesvirus 2] gi|109138191|gb|ABG25669.1| ORF68 [Ranid herpesvirus 2] Length = 720 Score = 43.8 bits (101), Expect = 0.042, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 41/142 (28%), Gaps = 7/142 (4%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GK+T+ A ++ + I+ A+ + T ++ ++ L R WF Sbjct: 172 PRRCGKSTIMAIIIS-AAIMFLEIDIVIQAHRKET-CLTFSNKIRTYVEQLQTRPWF-PS 228 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 +H AE + S + + V DEA Sbjct: 229 EFRIHSLQGTAEN----LIYTSDPAVKAKPSTCHFMASGSNSARGQNPDLVIVDEAGFVN 284 Query: 205 DIINKSILGFFTELNPNRFWIM 226 S+L + I Sbjct: 285 KGAFLSVLPLMAVKGTKQIHIS 306 >gi|293383713|ref|ZP_06629621.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis R712] gi|293387092|ref|ZP_06631657.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis S613] gi|312906241|ref|ZP_07765253.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis DAPTO 512] gi|312909587|ref|ZP_07768442.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis DAPTO 516] gi|291078949|gb|EFE16313.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis R712] gi|291083496|gb|EFE20459.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis S613] gi|310627887|gb|EFQ11170.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis DAPTO 512] gi|311290260|gb|EFQ68816.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis DAPTO 516] Length = 439 Score = 43.8 bits (101), Expect = 0.043, Method: Composition-based stats. Identities = 28/253 (11%), Positives = 71/253 (28%), Gaps = 23/253 (9%) Query: 94 NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153 A +++ + R ++ + I + ++ +++ ++ + +F++ + Sbjct: 49 IAHIIV-QLIMRYPVNAVAIRFVDNTIELSIFEQIKWAIEEQGVSKYFKVNKSPMK---- 103 Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSIL 212 + + I R + + +E A + K+I Sbjct: 104 --------ITYKPRGNYIVFRGAQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTIT 155 Query: 213 GFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDWKRYQIDTRTVEGIDSGF 265 + + N R W + E+ + + I F Sbjct: 156 NSLLRGELADGLFYKFFYSYNPPKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAF 215 Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325 E + + + A E G+ V F I+ + + + + + G D Sbjct: 216 IEEVNATRAKNPKRAEWEYDGKAIGSGVVPFDNLRVIKGCI-TDEMVANFDNIRNGLDF- 273 Query: 326 GEGGDKTVVVFRR 338 G D V Sbjct: 274 GYATDPLAFVRWH 286 >gi|254172550|ref|ZP_04879225.1| reverse gyrase [Thermococcus sp. AM4] gi|214033479|gb|EEB74306.1| reverse gyrase [Thermococcus sp. AM4] Length = 1714 Score = 43.8 bits (101), Expect = 0.043, Method: Composition-based stats. Identities = 30/228 (13%), Positives = 65/228 (28%), Gaps = 17/228 (7%) Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 +I A G+GK+T A+M ++ + G + + + T+ Sbjct: 89 QRTWVKRLLKGRSFSIIAPTGMGKSTFGAFMSVYYAT--KGKKSYIVVPTTPLVIQTI-- 144 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 + + + R + H + E E I+S Y I + + Sbjct: 145 ---RKVQAIIERTGLNVNLAYYHGNLRKKEKEEMLAKIESGDYDILITSAQWLARNFDEK 201 Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246 H +F D N +R ++ T + G ++I + + Sbjct: 202 LKGRHFDFIFVD----------DVDAFLKASKNIDRSLLLLGFTEEIIGKAWEIIRLKKQ 251 Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294 + +++ +E I + R +G Sbjct: 252 MARYLNGNSQDKNDRLKELNEAIEKIQREIEEFKRKNDIGIMIIASAT 299 >gi|302894383|ref|XP_003046072.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256726999|gb|EEU40359.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 1970 Score = 43.8 bits (101), Expect = 0.043, Method: Composition-based stats. Identities = 15/123 (12%), Positives = 31/123 (25%), Gaps = 10/123 (8%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + G GKT M W RP ++ IA + ++ + ++ L + Sbjct: 1153 NVLLGSPTGSGKTVAAELAMWWAFRERPKSKVVYIAPMKALVRERVKDWGARLARPLGLK 1212 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 E+ + + + + V D Sbjct: 1213 -LVELTGDNTPDTRTIQDADVIITTPEKWDGISRSWQTRGYV---------RQVSLVIID 1262 Query: 199 EAS 201 E Sbjct: 1263 EIH 1265 >gi|220916408|ref|YP_002491712.1| Terminase [Anaeromyxobacter dehalogenans 2CP-1] gi|219954262|gb|ACL64646.1| Terminase [Anaeromyxobacter dehalogenans 2CP-1] Length = 556 Score = 43.8 bits (101), Expect = 0.043, Method: Composition-based stats. Identities = 36/311 (11%), Positives = 82/311 (26%), Gaps = 52/311 (16%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW--LISTRPGMSI 110 W+ + V + + T I G+G GK+ L A + L+ + + Sbjct: 69 PWEAFLIVNVFGFRRRDTGHRRFTFVNVWI--GKGNGKSALAAALGLYLAFMDGEQDAEV 126 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + A S + W + + G ++ ++ + Sbjct: 127 LTYAFSRENTR----------------HVWETAKQMLRRKQGTELDVAKEYEIELNAVTL 170 Query: 171 ITCRTYS--EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 RT S + H + A+ DE D + ++ G + + +++ Sbjct: 171 YQARTNSVFKANSSNPDAQHGSRPSALIIDELHTVRDELWDTLKGAIVKRANSLMLTLST 230 Query: 229 NTRRLNGWFYDIFNIPL----------EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278 ++ + ++ + + ++ + + S D Sbjct: 231 GGFDISSKGFKVYEYDRNILAGVEQDDDTFVLIYTAPTDDISDEANWRKANPSLEAGIID 290 Query: 279 VARIEI-----------LGQF-------PQQEVNNFIPHNYIEEAMSREAI--DDLYAPL 318 + + GQF FI + D P Sbjct: 291 IRKFRATARQALSVPGQRGQFLALHMNRWTGAAEGFIDVARWDALPRTTVQDCIDRGLPC 350 Query: 319 IMGCDIAGEGG 329 ++G D A Sbjct: 351 VVGMDPADTND 361 >gi|158337223|ref|YP_001518398.1| phosphate starvation-induced protein PhoH [Acaryochloris marina MBIC11017] gi|158307464|gb|ABW29081.1| phosphate starvation-induced protein PhoH, putative [Acaryochloris marina MBIC11017] Length = 327 Score = 43.8 bits (101), Expect = 0.044, Method: Composition-based stats. Identities = 27/188 (14%), Positives = 50/188 (26%), Gaps = 28/188 (14%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR-----------GIGKTTLNAWMMLW 100 WQ + + + + I + R G GKT L A + + Sbjct: 99 EEWQDLQQDILATTRRGEQIRAKTLRQRQYIQSIRKYTLTFGIGPAGTGKTYLAAVLAVQ 158 Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 + +I + L Q ++ + Y L Sbjct: 159 ALLANEYERLILTRPAIE------------AGEKLGFLPGDLQQKVNPYLRPLYDALY-- 204 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220 + + ++ R E P ++ + V DEA T K T L Sbjct: 205 ELIEAERITSLMERGTIEVAPLAYMRGRTLNRAFVILDEAQNTTPAQMKM---MLTRLGR 261 Query: 221 NRFWIMTS 228 + ++T Sbjct: 262 DSRMVITG 269 >gi|154688036|ref|YP_001423197.1| hypothetical protein RBAM_036370 [Bacillus amyloliquefaciens FZB42] gi|154353887|gb|ABS75966.1| conserved hypothetical protein [Bacillus amyloliquefaciens FZB42] Length = 1043 Score = 43.8 bits (101), Expect = 0.044, Method: Composition-based stats. Identities = 33/245 (13%), Positives = 67/245 (27%), Gaps = 45/245 (18%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFV--MRFFPWGIKGKPLEHFSQ--------- 50 R + Q+ ++L + + + + + F+ F G + +Q Sbjct: 237 TRYLPVYQQT-KDLFDTVWNEKTQPVDEQFLQAYEEFQAGSQKVSASFAAQNSLYKTKMS 295 Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P+ Q E + + + K I A G GKT L A + Sbjct: 296 PNAMQKEALRNLKKTRNEGET-------KAVIIAATGTGKTFLAA----FDFEQFKPNKY 344 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + +A+ +L K + ++ + Sbjct: 345 LFLAH-REELLTKAIETFQKVTNNHEDFGLLTGTKKERDKRFLFSTVQTLHKK------- 396 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 +T + DE +++L +FT P +T+ Sbjct: 397 -----------ETLESFSTDEFDYIVIDEFHHAEASTYQAVLNYFT---PKFLLGLTATP 442 Query: 231 RRLNG 235 RL+G Sbjct: 443 ERLDG 447 >gi|319891867|ref|YP_004148742.1| Phage terminase, large subunit [Staphylococcus pseudintermedius HKU10-03] gi|317161563|gb|ADV05106.1| Phage terminase, large subunit [Staphylococcus pseudintermedius HKU10-03] Length = 424 Score = 43.8 bits (101), Expect = 0.044, Method: Composition-based stats. Identities = 39/271 (14%), Positives = 79/271 (29%), Gaps = 26/271 (9%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 +N ++ + RG K+ A ++ + +++ + K + + ++ Sbjct: 20 NNKNFYRV-VKGSRGSKKSRTTALNFIYRLMKYEWSNLLVVRRFSNTNKQSTYTDLKWAT 78 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 + L H F+ SL + + IT T Sbjct: 79 NQLGVAHLFKFNE-SLPEITYKPTGQKILFRGLDDPLKITSITVDVGI-----------L 126 Query: 193 MAVFNDEASGTPD-----IINKSILGFFTELNPNRFWIMTSNTRRLNGW----FYDIFNI 243 + +EA + + +SI G E + +T N W F+D Sbjct: 127 CWAWFEEAYQIENFDKFSTVVESIRGSLDEPEFFKQITVTFNPWSERHWLKPTFFDEDTR 186 Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303 + R E +D + Y + ARI G++ + +E Sbjct: 187 LKNVYSN-TTTFRVNEWLDKVDVDRYEDLYRTNPRRARIVCDGEW-GVAEGLVYDNFVVE 244 Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334 + + + G D G D T + Sbjct: 245 DFDWFQIYKKTQFKVH-GID-YGFTNDPTAL 273 >gi|118370404|ref|XP_001018403.1| SNF2 family N-terminal domain containing protein [Tetrahymena thermophila] gi|89300170|gb|EAR98158.1| SNF2 family N-terminal domain containing protein [Tetrahymena thermophila SB210] Length = 1547 Score = 43.8 bits (101), Expect = 0.044, Method: Composition-based stats. Identities = 32/245 (13%), Positives = 62/245 (25%), Gaps = 29/245 (11%) Query: 43 KPLEHFSQ-PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101 KP EHF +QL+ + +D +N G+GKT ++ + Sbjct: 661 KPPEHFQGTLKEYQLKGLRWLDNLYEQGINGILADEM--------GLGKTIQAISLITHI 712 Query: 102 ISTRPGMSI----ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 T +I + IA S + L N E+ K+ L ++ +++ Sbjct: 713 AGT---KNIWGPFLVIAPS-STLYN-WQQELKKFFPALKVLPYWGSLKQRKMIRKYFSAK 767 Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217 T + + DEA +I Sbjct: 768 N----LGLKSSPFHLVITSYQLVVSDEKTFQRIKWQYMILDEAQAIKNIN-SMRWKTLLS 822 Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277 N ++T + +++ + + I D Sbjct: 823 FNSRNKLLLTGTP--IQNTMAELWALL----HFIMPKLFDSHDQFQEWFSKDIEASSQDK 876 Query: 278 DVARI 282 Sbjct: 877 SQLNQ 881 >gi|51244266|ref|YP_064150.1| hypothetical protein DP0414 [Desulfotalea psychrophila LSv54] gi|50875303|emb|CAG35143.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54] Length = 708 Score = 43.8 bits (101), Expect = 0.044, Method: Composition-based stats. Identities = 21/188 (11%), Positives = 45/188 (23%), Gaps = 29/188 (15%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +WQ + + G GKT + A +L + P I Sbjct: 193 DQWQKKAAIETPEGAQR-------------VRGLAGSGKTVVLALKAAYLHAEHPEWDIA 239 Query: 112 CIANSETQLKNTLWAEVSKWL-----------SMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 N+ L + V ++ + W + ++ + + + Sbjct: 240 ITFNT-RSLSQQFFDLVERFSIEHSGDKPNFEKLHILHAWGSYSASGIYSTIADSLNVPA 298 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA---VFNDEASGTPDIINKSILGFFTE 217 +K+ + + + V DEA P + + Sbjct: 299 MDFGTAKNQYGYNNAFHGACGELLTYAKSQPVELYDAVLIDEAQDLPVPFFQLVYLATKS 358 Query: 218 LNPNRFWI 225 W Sbjct: 359 P-KRIVWA 365 >gi|315041334|ref|XP_003170044.1| DEAD/DEAH box helicase [Arthroderma gypseum CBS 118893] gi|311346006|gb|EFR05209.1| DEAD/DEAH box helicase [Arthroderma gypseum CBS 118893] Length = 1936 Score = 43.8 bits (101), Expect = 0.045, Method: Composition-based stats. Identities = 14/222 (6%), Positives = 58/222 (26%), Gaps = 31/222 (13%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +P +WQ + ++ +D + + A GKT ++ + M ++ Sbjct: 844 EPDKWQRDVLDEIDAN------------RSLFVVAPTSAGKTFISFYAMKKVLQQDDNGV 891 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ +A ++ + +++ H ++H + + + + Sbjct: 892 LVYVAPTKALVNQVAAEIQARFSKSFKHGGKSVW---AIHTRDYRINSPRGCQVLVTVPH 948 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF------------TE 217 + + ++ + + DE + + Sbjct: 949 ILQIMLLAPANATSW----SCRIKRIIFDEIHCISQADDGVVWEQLLLLAPCPIIALSAT 1004 Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 + + + ++ + + + Sbjct: 1005 VGNPQAFYKWLSSTQRANGIDITMIEHRHRYSDLRKYVYKPP 1046 >gi|194443211|ref|YP_002041983.1| hypothetical protein SNSL254_A2937 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194401874|gb|ACF62096.1| putative conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 591 Score = 43.8 bits (101), Expect = 0.045, Method: Composition-based stats. Identities = 41/337 (12%), Positives = 77/337 (22%), Gaps = 76/337 (22%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 W E + H N+ I R IG T A+ I Sbjct: 140 DTWAEEHLFEYQKHLRRNIGQLVRN-----ILKSRQIGATWYFAFEAFENAVMTGDPQIF 194 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A+ + AE + + +F + L + Sbjct: 195 LSASK-------VQAEYFRSYIVNIAEQYFGITLTGNPIRLSNGAELRFLSTNKN----- 242 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSN 229 T ++YS ++ DE P+ +N+ T S Sbjct: 243 TAQSYSGH---------------LYCDEYFWVPNFTKLNEVASAMATHDKWRT--TYFST 285 Query: 230 TRRLNG-----WFYDIFNIPLEDWKRYQIDTRT--------VEGIDSGFHEGIISRYGLD 276 W D + + + T + + Sbjct: 286 PSAKTHQAYPFWTGDEWKQGSKKRTAIKFPTFDELRDGGRVCPDGQWRYVITMEDAIAGG 345 Query: 277 SDVARIE--------------ILGQFPQQEVNNFIPHNYIEEA-----MSREAIDDLYAP 317 ++A IE + F ++ + +E ++ D P Sbjct: 346 FNLANIEKLRNRYNTATFNMLYMCVFVD-NKDSVFSFSDLEACGVEVDTWQDHNPDAARP 404 Query: 318 L----IMG-CDIAGEGGDKTVVVFRRGNIIEHIFDWS 349 + G D A G D + V + + + Sbjct: 405 FGDRPVWGGFDPARSG-DLSCFVIV-APPMFAVEKFR 439 >gi|169598618|ref|XP_001792732.1| hypothetical protein SNOG_02115 [Phaeosphaeria nodorum SN15] gi|160704433|gb|EAT90327.2| hypothetical protein SNOG_02115 [Phaeosphaeria nodorum SN15] Length = 1992 Score = 43.8 bits (101), Expect = 0.045, Method: Composition-based stats. Identities = 15/123 (12%), Positives = 31/123 (25%), Gaps = 10/123 (8%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + G GKT M W +PG ++ IA + ++ + + + R Sbjct: 1149 NVLLGSPTGSGKTVAAELAMWWAFREKPGSKVVYIAPMKALVRERVQDWGKRLAGPMGLR 1208 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 E+ + + + + V D Sbjct: 1209 -LVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRGYV---------RQVSLVIID 1258 Query: 199 EAS 201 E Sbjct: 1259 EIH 1261 >gi|149186592|ref|ZP_01864904.1| hypothetical protein ED21_31944 [Erythrobacter sp. SD-21] gi|148829819|gb|EDL48258.1| hypothetical protein ED21_31944 [Erythrobacter sp. SD-21] Length = 1123 Score = 43.8 bits (101), Expect = 0.045, Method: Composition-based stats. Identities = 29/209 (13%), Positives = 52/209 (24%), Gaps = 12/209 (5%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 I G GKT +A M+L L+ G I +NS + N L L H H Sbjct: 741 IQGPPGTGKTYTSAHMILALLKA--GKRIGVSSNSHKAINNLLGKVEKVALEDGYHIHGA 798 Query: 142 EMQS---LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + S + G E + + I+ Y + T + D Sbjct: 799 KKASAGDKDSYLRGGMLEDVTDAKDIEDGDYELVGGTAWLFARGDLD----QRFDYLIVD 854 Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 EA ++ + + + + Q + Sbjct: 855 EAGQVSLGHLLAMGASAKNIILVGDQMQLGQPIQGAHPGESGMSTLD---YLLQDEATIA 911 Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILGQ 287 + ++ G+ Sbjct: 912 PDRGILLDTSWRMHLDISGFISAAVYDGR 940 >gi|312902795|ref|ZP_07761999.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis TX0635] gi|310633849|gb|EFQ17132.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis TX0635] gi|315149046|gb|EFT93062.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis TX4244] gi|315167459|gb|EFU11476.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis TX1341] gi|315576726|gb|EFU88917.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis TX0630] Length = 429 Score = 43.8 bits (101), Expect = 0.045, Method: Composition-based stats. Identities = 28/253 (11%), Positives = 71/253 (28%), Gaps = 23/253 (9%) Query: 94 NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153 A +++ + R ++ + I + ++ +++ ++ + +F++ + Sbjct: 49 IAHIIV-QLIMRYPVNAVAIRYVDNTIELSIFEQIKWAIEEQGVSKYFKVNKSPMK---- 103 Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSIL 212 + + I R + + +E A + K+I Sbjct: 104 --------ITYKPRGNYIVFRGAQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTIT 155 Query: 213 GFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDWKRYQIDTRTVEGIDSGF 265 + + N R W + E+ + + I F Sbjct: 156 NSLLRGELADGLFYKFFYSYNPPKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAF 215 Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325 E + + + A E G+ V F I+ + + + + + G D Sbjct: 216 IEEVNATRAKNPKRAEWEYDGKAIGSGVVPFDNLRVIKGCI-TDEMAANFDNIRNGLDF- 273 Query: 326 GEGGDKTVVVFRR 338 G D V Sbjct: 274 GYATDPLAFVRWH 286 >gi|229545399|ref|ZP_04434124.1| terminase large subunit G2p [Enterococcus faecalis TX1322] gi|229549646|ref|ZP_04438371.1| terminase large subunit G2p [Enterococcus faecalis ATCC 29200] gi|255972343|ref|ZP_05422929.1| terminase large subunit G2p [Enterococcus faecalis T1] gi|229305311|gb|EEN71307.1| terminase large subunit G2p [Enterococcus faecalis ATCC 29200] gi|229309506|gb|EEN75493.1| terminase large subunit G2p [Enterococcus faecalis TX1322] gi|255963361|gb|EET95837.1| terminase large subunit G2p [Enterococcus faecalis T1] gi|315028537|gb|EFT40469.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis TX4000] Length = 429 Score = 43.8 bits (101), Expect = 0.045, Method: Composition-based stats. Identities = 28/253 (11%), Positives = 71/253 (28%), Gaps = 23/253 (9%) Query: 94 NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153 A +++ + R ++ + I + ++ +++ ++ + +F++ + Sbjct: 49 IAHIIV-QLIMRYPVNAVAIRYVDNTIELSIFEQIKWAIEEQGVSKYFKVNKSPMK---- 103 Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSIL 212 + + I R + + +E A + K+I Sbjct: 104 --------ITYKPRGNYIVFRGAQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTIT 155 Query: 213 GFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDWKRYQIDTRTVEGIDSGF 265 + + N R W + E+ + + I F Sbjct: 156 NSLLRGELADGLFYKFFYSYNPPKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAF 215 Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325 E + + + A E G+ V F I+ + + + + + G D Sbjct: 216 IEEVNATRAKNPKRAEWEYDGKAIGSGVVPFDNLRVIKGCI-TDEMAANFDNIRNGLDF- 273 Query: 326 GEGGDKTVVVFRR 338 G D V Sbjct: 274 GYATDPLAFVRWH 286 >gi|109948104|ref|YP_665332.1| phage-related CUP0950-like protein [Helicobacter acinonychis str. Sheeba] gi|109715325|emb|CAK00333.1| phage-related CUP0950-like protein [Helicobacter acinonychis str. Sheeba] Length = 517 Score = 43.8 bits (101), Expect = 0.045, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 52/167 (31%), Gaps = 14/167 (8%) Query: 12 EQELHEMLMHAECVLSFKNFVMRFFPWG-IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70 EQ L E+ + F F+ W + KP W + ++ V N Sbjct: 4 EQALRELALRELARRDFFQFLRL--KWERYENKPFL-----DNWHIRYLCKVLECTQPNT 56 Query: 71 NNSNPTIFKCAISAGRGIGKTTLNAW-MMLWLISTRPGMSIICIANSETQLKNTLWAEVS 129 + I + ++ GKT + A + W + I I+ S + L +++ Sbjct: 57 SAHGELIRRLIVNMPPSYGKTEIIARCFIAWSLGKDRSKKIFYISYS-----DELCRKIA 111 Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 + L +++ E + + T ++ Sbjct: 112 NQVRDLMDSFFYKSVFFDEPLEYLQNNAREFILREGGGLFVTTLKSA 158 >gi|257090295|ref|ZP_05584656.1| terminase large subunit [Enterococcus faecalis CH188] gi|256999107|gb|EEU85627.1| terminase large subunit [Enterococcus faecalis CH188] Length = 430 Score = 43.8 bits (101), Expect = 0.045, Method: Composition-based stats. Identities = 28/253 (11%), Positives = 71/253 (28%), Gaps = 23/253 (9%) Query: 94 NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153 A +++ + R ++ + I + ++ +++ ++ + +F++ + Sbjct: 50 IAHIIV-QLIMRYPVNAVAIRYVDNTIELSIFEQIKWAIEEQGVSKYFKVNKSPMK---- 104 Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSIL 212 + + I R + + +E A + K+I Sbjct: 105 --------ITYKPRGNYIVFRGAQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTIT 156 Query: 213 GFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDWKRYQIDTRTVEGIDSGF 265 + + N R W + E+ + + I F Sbjct: 157 NSLLRGELADGLFYKFFYSYNPPKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAF 216 Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325 E + + + A E G+ V F I+ + + + + + G D Sbjct: 217 IEEVNATRAKNPKRAEWEYDGKAIGSGVVPFDNLRVIKGCI-TDEMAANFDNIRNGLDF- 274 Query: 326 GEGGDKTVVVFRR 338 G D V Sbjct: 275 GYATDPLAFVRWH 287 >gi|312220092|emb|CBY00034.1| similar to activating signal cointegrator 1 complex subunit 3 [Leptosphaeria maculans] Length = 2000 Score = 43.8 bits (101), Expect = 0.046, Method: Composition-based stats. Identities = 14/123 (11%), Positives = 31/123 (25%), Gaps = 10/123 (8%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + G GKT M W +PG ++ IA + ++ + + + + Sbjct: 1159 NVLLGSPTGSGKTVAAELAMWWAFREKPGSKVVYIAPMKALVRERVQDWGKRLAGPMGLK 1218 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 E+ + + + + V D Sbjct: 1219 -LVELTGDNTPDTRTIRDADVIITTPEKWDGISRSWQTRGYV---------RQVSLVIID 1268 Query: 199 EAS 201 E Sbjct: 1269 EIH 1271 >gi|183220165|ref|YP_001838161.1| putative helicase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910285|ref|YP_001961840.1| DNA or RNA helicase of superfamily II [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774961|gb|ABZ93262.1| DNA or RNA helicase of superfamily II [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778587|gb|ABZ96885.1| Putative helicase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 1046 Score = 43.8 bits (101), Expect = 0.046, Method: Composition-based stats. Identities = 34/217 (15%), Positives = 71/217 (32%), Gaps = 29/217 (13%) Query: 23 ECVLSFKNFVMRFFPWGIKGK-PLEHFSQ--PHRWQLEFMEAVDVHCHSNVNNSNPTIFK 79 + F F + P F++ P +Q +E + N + Sbjct: 285 DSKADFNRFKNALDTYKKFDSIPSAFFAELTPRVYQERILEELIAERRLGNNKNL----- 339 Query: 80 CAISAGRGIGKTTLNAW-MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 I A G GKT ++A+ + I S++ IA+ + L+ L Sbjct: 340 --IVAATGTGKTVISAFDYRRYSIINNSKPSLLYIAHRKEILEQAL-------------S 384 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + + S + + S H + ++ + ++ + + + D Sbjct: 385 CFRMVLQDQNFGSLFVDGINPFSGTEAPLHIFASIQSINSKQI--WKILGKSFFNFIIID 442 Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 E + +SI F+E P +T+ R++G Sbjct: 443 EVHHSSASSYRSI---FSEFTPEILLGLTATPERMDG 476 >gi|119493007|ref|XP_001263759.1| DEAD/DEAH box helicase, putative [Neosartorya fischeri NRRL 181] gi|119411919|gb|EAW21862.1| DEAD/DEAH box helicase, putative [Neosartorya fischeri NRRL 181] Length = 1797 Score = 43.8 bits (101), Expect = 0.046, Method: Composition-based stats. Identities = 32/275 (11%), Positives = 73/275 (26%), Gaps = 27/275 (9%) Query: 25 VLSFKNFVMR---FFPWGIKGKPLEHFSQ--PHRWQLEFMEAVDVHCHSNVNNSNPTIFK 79 L F+ F + F G + P +WQ + ++ +D + Sbjct: 714 PLDFQAFQLLHCGPFMDRQTGAKPDDRVGFEPDKWQKDVLDELDKN------------HS 761 Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 + A GKT ++ + M ++ ++ +A ++ + +++ P Sbjct: 762 VFVVAPTSAGKTFISFYAMSKVLQEDDTGVLVYVAPTKALVNQIGAEIHARFRKRYPGPE 821 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + + + + S T+ + DE Sbjct: 822 QTVWAISTRDVRINDPLKCQILVTV---PHFLQIMLLSSSNAITW----APRVKCIIFDE 874 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIM---TSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256 + + L P R + N W N K Q R Sbjct: 875 IHSIGHTEDGLVWEQLLLLAPCRIIALSATVGNPSEFADWLQSTQNNMGVTLKLIQHTQR 934 Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291 + + GL + + +F + Sbjct: 935 YSDLRKYFYMPADRPFEGLSRSKHKGRLEPKFIRG 969 >gi|219847371|ref|YP_002461804.1| DEAD/DEAH box helicase domain-containing protein [Chloroflexus aggregans DSM 9485] gi|219541630|gb|ACL23368.1| DEAD/DEAH box helicase domain protein [Chloroflexus aggregans DSM 9485] Length = 550 Score = 43.8 bits (101), Expect = 0.046, Method: Composition-based stats. Identities = 24/201 (11%), Positives = 46/201 (22%), Gaps = 25/201 (12%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 + +P Q + + A G GKT A M+ ++ P Sbjct: 21 GYDEPTPIQAQAI------------PLLLAGRDVIAQAQTGTGKTAAFALPMIEQVTDEP 68 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 + + +A + A + ++L + P + Q G+ Sbjct: 69 VVQALVLAPTRELAVQVAEA----------VHRYGRHRALRVLPIYGGQPIERQLRGLAQ 118 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK---SILGFFTELNPNRF 223 + H V DEA D+ + T Sbjct: 119 GVQVVVGTPGRVLDHLRRGTLRFDHLRLVVLDEADEMLDMGFAEELEAILQLTPAERQTA 178 Query: 224 WIMTSNTRRLNGWFYDIFNIP 244 + + P Sbjct: 179 LFSATLPPAVQSLTLRYTRQP 199 >gi|319893149|ref|YP_004150024.1| putative helicase [Staphylococcus pseudintermedius HKU10-03] gi|317162845|gb|ADV06388.1| putative helicase [Staphylococcus pseudintermedius HKU10-03] Length = 944 Score = 43.8 bits (101), Expect = 0.046, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 51/154 (33%), Gaps = 12/154 (7%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + AG G GKT + + M++ G+S + I +S++ W + L + Sbjct: 458 LCAGTGFGKTVIASKMIV-----EKGVSTLIIVHSKSLAAQ--WKSQIETFVDLEDDPFP 510 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 E + Q + D N +GM V DEA Sbjct: 511 EYTE-KGRLKKKDKIGMIQGGKSKRSKNIDIALFQTLTTMDNLEDVFNDYGM-VIVDEAH 568 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 + + ++N + +T+ +R +G Sbjct: 569 HVAAKTFEDV---MAKVNSRYVYGLTATPKREDG 599 >gi|7649878|dbj|BAA94156.1| large subunit terminase [Enterobacteria phage VT2-Sakai] Length = 449 Score = 43.8 bits (101), Expect = 0.046, Method: Composition-based stats. Identities = 29/290 (10%), Positives = 64/290 (22%), Gaps = 40/290 (13%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEA 61 PR + E E +M + + + + + L F Q + + Sbjct: 8 PRCDEPSEMTEAEQRLFIMTK--LSNPWWRLNHLYKIQNEKGELVTFRM-RPAQRQLFRS 64 Query: 62 VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121 + K I R +G +T +L P + +A + Sbjct: 65 MHN--------------KNIILKARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQAAS 110 Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 +++ LP + + ++ Sbjct: 111 EIFRTKIAVPFDHLPDWLRASFTIVERRSGASG-----GYILFGHGSSIQVATSFRSGTV 165 Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241 + + P + G ++ S + G FY++ Sbjct: 166 QRLHISEHGKI-------CAKYPAKAKELRTGTLNAVSDECIIFDESTAEGVGGDFYEMS 218 Query: 242 NIPLE-----------DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280 N E D+K + + E + Sbjct: 219 NRAQEITASGLLLTAQDYKFHFYAWWQDPKYSARVPESGLKLSREKMTYF 268 >gi|322789902|gb|EFZ15034.1| hypothetical protein SINV_01618 [Solenopsis invicta] Length = 1808 Score = 43.8 bits (101), Expect = 0.047, Method: Composition-based stats. Identities = 24/221 (10%), Positives = 51/221 (23%), Gaps = 28/221 (12%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 +F Q + Q + A+ + A G GKTT+ + +L L++ Sbjct: 991 YNFPQFNPIQTQVFNAIYNSDD-----------NVFVGAPTGSGKTTIAEFAVLRLLTQN 1039 Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 P + + + E + +K+ L + + Sbjct: 1040 PEGRCVYMVSKEALAELVYVNWATKFGQKLGRKVVLLSGETGTDLK----------LLAK 1089 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL------- 218 + T + + + DE + + Sbjct: 1090 GQIIITTADKWDVLSRRWKQRKNVQNIQLFIVDELQLIGGEEGPVLEVACSRARYISSQL 1149 Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 + I S + P + R V Sbjct: 1150 DKPTRIIALSASLADAKDAAQWLGAPAAATFNFHPSVRPVP 1190 >gi|307295867|ref|ZP_07575699.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis TX0411] gi|306496198|gb|EFM65777.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis TX0411] gi|315169423|gb|EFU13440.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis TX1342] Length = 429 Score = 43.8 bits (101), Expect = 0.047, Method: Composition-based stats. Identities = 28/253 (11%), Positives = 71/253 (28%), Gaps = 23/253 (9%) Query: 94 NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153 A +++ + R ++ + I + ++ +++ ++ + +F++ + Sbjct: 49 IAHIIV-QLIMRYPVNAVAIRYVDNTIELSIFEQIKWAIEEQGVSKYFKVNKSPMK---- 103 Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSIL 212 + + I R + + +E A + K+I Sbjct: 104 --------ITYKPRGNYIVFRGAQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTIT 155 Query: 213 GFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDWKRYQIDTRTVEGIDSGF 265 + + N R W + E+ + + I F Sbjct: 156 NSLLRGELADGLFYKFFYSYNPPKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAF 215 Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325 E + + + A E G+ V F I+ + + + + + G D Sbjct: 216 IEEVNATRAKNPKRAEWEYDGKAIGSGVVPFDNLRVIKGCI-TDEMAANFDNIRNGLDF- 273 Query: 326 GEGGDKTVVVFRR 338 G D V Sbjct: 274 GYATDPLAFVRWH 286 >gi|256961403|ref|ZP_05565574.1| terminase large subunit [Enterococcus faecalis Merz96] gi|256951899|gb|EEU68531.1| terminase large subunit [Enterococcus faecalis Merz96] Length = 432 Score = 43.8 bits (101), Expect = 0.047, Method: Composition-based stats. Identities = 28/253 (11%), Positives = 71/253 (28%), Gaps = 23/253 (9%) Query: 94 NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153 A +++ + R ++ + I + ++ +++ ++ + +F++ + Sbjct: 42 IAHIIV-QLIMRYPVNAVAIRFVDNTIELSIFEQIKWAIEEQGVSKYFKVNKSPMK---- 96 Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSIL 212 + + I R + + +E A + K+I Sbjct: 97 --------ITYKPRGNYIVFRGAQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTIT 148 Query: 213 GFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDWKRYQIDTRTVEGIDSGF 265 + + N R W + E+ + + I F Sbjct: 149 NSLLRGELADGLFYKFFYSYNPPKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAF 208 Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325 E + + + A E G+ V F I+ + + + + + G D Sbjct: 209 IEEVNATRAKNPKRAEWEYDGKAIGSGVVPFDNLRVIKGCI-TDEMVANFDNIRNGLDF- 266 Query: 326 GEGGDKTVVVFRR 338 G D V Sbjct: 267 GYATDPLAFVRWH 279 >gi|124008727|ref|ZP_01693417.1| hypothetical protein M23134_07327 [Microscilla marina ATCC 23134] gi|123985803|gb|EAY25676.1| hypothetical protein M23134_07327 [Microscilla marina ATCC 23134] Length = 536 Score = 43.8 bits (101), Expect = 0.047, Method: Composition-based stats. Identities = 38/258 (14%), Positives = 70/258 (27%), Gaps = 22/258 (8%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 AG+G GKT + LIS P + AN++ QL ++ V L + E Sbjct: 32 MAGQGAGKTHGAGLVSFRLISNFPRVFGFMGANTDMQLTDSTLYRVFLVWKDLGLEEYDE 91 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE-----ERPDTFVGPHNTHGMAVFN 197 + G G K Y ++ + + Sbjct: 92 HTGEGDYVVGTQPPRHFSREGHAFKSYRNKISFWNGCVVFIGSLENYKAHDGKEFAWAIL 151 Query: 198 DEASGTPDI-INKSILGFFTELN-----PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY 251 DE T + + + ILG + + + + FN Sbjct: 152 DETKDTREEAVQEVILGRLRQQGLYISQTRAGALTSEEYDEGSSLANLPFNPLYIFTSPA 211 Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-----------FPQQEVNNFIPHN 300 ++ + + E I + + ++ G + +N+I Sbjct: 212 KVPWINDWFELNEYEEEIKVKIYDPPQYFKKKVGGDSKFVVISATHLNLKNLPSNYIKKQ 271 Query: 301 YIEEAMSREAIDDLYAPL 318 A R + PL Sbjct: 272 EANLASHRHGMLIYGDPL 289 >gi|298707554|emb|CBJ30138.1| conserved unknown protein [Ectocarpus siliculosus] Length = 2343 Score = 43.8 bits (101), Expect = 0.047, Method: Composition-based stats. Identities = 23/202 (11%), Positives = 48/202 (23%), Gaps = 31/202 (15%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L + + Q + + S + A G GKT + ++ +++ Sbjct: 1452 LYRYQHFNPIQTQLFHVLYHSDES-----------VLLGAPTGSGKTAVAEIAIMRMLNQ 1500 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW---FEMQSLSLHPSGWYAELLEQS 161 PG + +A + + L W + E+ Sbjct: 1501 HPGAKAVYVAPLKALARERL----KDWREKFGKKMDMGVLELTGDHTPDGDALRRASIIV 1556 Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221 + + DT V DE + + + Sbjct: 1557 TTPEKWDGVTRGWKSRDYVKDTG---------LVIMDEIHLLGEDRGPVLEVIVS----R 1603 Query: 222 RFWIMTSNTRRLNGWFYDIFNI 243 +I S +R G + Sbjct: 1604 MRYIAASAGKRDTGTGHRQVRF 1625 >gi|153811345|ref|ZP_01964013.1| hypothetical protein RUMOBE_01737 [Ruminococcus obeum ATCC 29174] gi|149832472|gb|EDM87556.1| hypothetical protein RUMOBE_01737 [Ruminococcus obeum ATCC 29174] Length = 579 Score = 43.8 bits (101), Expect = 0.048, Method: Composition-based stats. Identities = 38/299 (12%), Positives = 86/299 (28%), Gaps = 60/299 (20%) Query: 77 IFKCA-ISAGRGIGKTTLNAWMMLWL--ISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 F+ + + GR GK+ LN + + I C A + Q ++ E+ K++ Sbjct: 97 RFRTSYVQLGRQNGKSFLNGILAAYYGNFEKYKYGQIYCTATKKDQSL-IVFNEIVKFIR 155 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH--NTH 191 +L E + T+S+ + + Sbjct: 156 S-------------------DHDLDECFNIHEHNSTIDCLLTHSKIKALSGDTKSIDGFR 196 Query: 192 GMAVFNDEA-SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF--------- 241 DE + D + K + G ++ ++T+ L Y ++ Sbjct: 197 PYLGIVDEYHAHKNDQMYKLLEGGIKKMKSALISVITTAGFDLKSPCYALYEYCVKVLKG 256 Query: 242 --NIPLEDWKRYQIDTRTVEGIDSGFH--------------------EGIISRYGLDSDV 279 + + Q+D + E G Sbjct: 257 IAHNDSQFIYIAQMDETDDMWTPKNWIKANPILQYDLEALENMIPIAETAKEMGGSSLRD 316 Query: 280 ARIEILGQFPQQEVNNFI-PHNYIEEAMSREAIDD-LYAPLIMGCDIAGEGGDKTVVVF 336 ++ L + Q + ++ + +++ ++D +G D++ GGD T + Sbjct: 317 FIVKQLNMWIQWTNDVYLKDMELWQNGATKKTLEDFRGQKCYVGLDLS-AGGDLTSLAI 374 >gi|46124035|ref|XP_386571.1| hypothetical protein FG06395.1 [Gibberella zeae PH-1] Length = 1968 Score = 43.8 bits (101), Expect = 0.048, Method: Composition-based stats. Identities = 15/123 (12%), Positives = 30/123 (24%), Gaps = 10/123 (8%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + G GKT M W RP ++ IA + ++ + + L + Sbjct: 1152 NVLLGSPTGSGKTVAAELAMWWAFRERPKSKVVYIAPMKALVRERVKDWGVRLARPLGLK 1211 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 E+ + + + + V D Sbjct: 1212 -LVELTGDNTPDTRTIQDADIIITTPEKWDGISRSWQTRGYV---------RQVSLVIID 1261 Query: 199 EAS 201 E Sbjct: 1262 EIH 1264 >gi|269959614|ref|ZP_06173995.1| Superfamily II DNA and RNA helicase [Vibrio harveyi 1DA3] gi|269835672|gb|EEZ89750.1| Superfamily II DNA and RNA helicase [Vibrio harveyi 1DA3] Length = 407 Score = 43.8 bits (101), Expect = 0.048, Method: Composition-based stats. Identities = 44/318 (13%), Positives = 87/318 (27%), Gaps = 50/318 (15%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 + + +P + Q E + SA G GKT L Sbjct: 16 EAIEEMGYERPTKIQAEAIPQALDG------------RDILASAPTGTGKTAAFVLPALQ 63 Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 + P I+ + + A+ ++ L+ + F + + Sbjct: 64 YLQDFPRRKPGPARILILTPTRELAMQV--ADQARALAKNTKLNIFTITGGVQYQEHADI 121 Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 Q + + + DEA D+ + Sbjct: 122 LATTQDI--------VVATPGRLREYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRL 173 Query: 216 TELNPNRFWIMTSNTR----RLNGWFYDIFNIP---------LEDWKRYQIDTR-TVEGI 261 + R + + + G+ D+ N P E K Q R Sbjct: 174 SNECRWRKQTLLFSATLEGKGVEGFTADLLNEPAEIDAKSPLRERKKIAQWYHRADDAEH 233 Query: 262 DSGFHEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP-- 317 + II+ + V E L + Q + IP ++I+ M ++ ++ A Sbjct: 234 KLALLKHIITEQAERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAIARFR 293 Query: 318 -----LIMGCDIAGEGGD 330 +++ D+A G D Sbjct: 294 EGTVNVLLATDVAARGID 311 >gi|300860887|ref|ZP_07106974.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis TUSoD Ef11] gi|295113272|emb|CBL31909.1| phage terminase, large subunit, PBSX family [Enterococcus sp. 7L76] gi|300849926|gb|EFK77676.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis TUSoD Ef11] Length = 422 Score = 43.8 bits (101), Expect = 0.048, Method: Composition-based stats. Identities = 28/253 (11%), Positives = 71/253 (28%), Gaps = 23/253 (9%) Query: 94 NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153 A +++ + R ++ + I + ++ +++ ++ + +F++ + Sbjct: 42 IAHIIV-QLIMRYPVNAVAIRYVDNTIELSIFEQIKWAIEEQGVSKYFKVNKSPMK---- 96 Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSIL 212 + + I R + + +E A + K+I Sbjct: 97 --------ITYKPRGNYIVFRGAQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTIT 148 Query: 213 GFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDWKRYQIDTRTVEGIDSGF 265 + + N R W + E+ + + I F Sbjct: 149 NSLLRGELADGLFYKFFYSYNPPKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAF 208 Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325 E + + + A E G+ V F I+ + + + + + G D Sbjct: 209 IEEVNATRAKNPKRAEWEYDGKAIGSGVVPFDNLRVIKGCI-TDEMAANFDNIRNGLDF- 266 Query: 326 GEGGDKTVVVFRR 338 G D V Sbjct: 267 GYATDPLAFVRWH 279 >gi|262200363|ref|YP_003271571.1| NERD domain-containing protein [Gordonia bronchialis DSM 43247] gi|262083710|gb|ACY19678.1| NERD domain protein [Gordonia bronchialis DSM 43247] Length = 550 Score = 43.8 bits (101), Expect = 0.048, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 45/167 (26%), Gaps = 5/167 (2%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 + + + + ++ + + I G G GKT L + +R G + I S Sbjct: 200 DATAEIITEQQAVILSAISKLSRVEIRGGAGSGKTFLA--LEQARRLSRAGQRVALICYS 257 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 S W + E L + ++ + T Sbjct: 258 HGLASYFT-RITSHWSRREQPAYIGEFHDLGITWGASAGPDESVRTQEAAEFWEHTLPHQ 316 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223 E + H A+ DEA D +L + + Sbjct: 317 MVELAEALPPGHR--FDAIVIDEAQDFADDWWLPLLACLRDPGTSGI 361 >gi|83649379|ref|YP_437814.1| Mu-like prophage FluMu protein gp28 [Hahella chejuensis KCTC 2396] gi|83637422|gb|ABC33389.1| Mu-like prophage FluMu protein gp28 [Hahella chejuensis KCTC 2396] Length = 581 Score = 43.8 bits (101), Expect = 0.048, Method: Composition-based stats. Identities = 38/319 (11%), Positives = 80/319 (25%), Gaps = 68/319 (21%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 + + +++ + + + R IG T AW T I A Sbjct: 137 ETIRKELFYDYQHRWHDNKSQRTRFILKS-RQIGATYYFAWEAFQDAITSGDNQIFLSA- 194 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 S +Q + A + K+ +++ S G + + + RT Sbjct: 195 SRSQA-DIFKAYILKFAREY------------FDTELKGVDVIPLSNGAELRFVSTNGRT 241 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW--IMTSNTRRL 233 G H ++ DE PD + + + ++ W S Sbjct: 242 A--------QGYHGH----LYIDEVFWIPD--FDRLNKLASGMAAHKKWRKTYFSTPSVK 287 Query: 234 NGWFYDIFNIPL-------------------------EDWKRYQIDTRTVEGIDSGFHEG 268 + Y +++ + R + + Sbjct: 288 SHGAYTLWSGERYNESRRHKVEFDLSRAALREGQLGPDKVWRNVVTVEDAANQGCDLFDI 347 Query: 269 IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS-----------REAIDDLYAP 317 + + F + + + + + R+ P Sbjct: 348 DELKQEYTEAEFNNLFMCAFMEAGL-SVFKLDDLLSCAVCSGEVWPDFKPRQPRPFANYP 406 Query: 318 LIMGCDIAGEGGDKTVVVF 336 + +G D A G TVVV Sbjct: 407 VWLGYDPARTGDRSTVVVV 425 >gi|307272791|ref|ZP_07554038.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis TX0855] gi|307275955|ref|ZP_07557088.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis TX2134] gi|306507285|gb|EFM76422.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis TX2134] gi|306510405|gb|EFM79428.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis TX0855] Length = 429 Score = 43.8 bits (101), Expect = 0.049, Method: Composition-based stats. Identities = 28/253 (11%), Positives = 71/253 (28%), Gaps = 23/253 (9%) Query: 94 NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153 A +++ + R ++ + I + ++ +++ ++ + +F++ + Sbjct: 49 IAHIIV-QLIMRYPVNAVAIRYVDNTIELSIFEQIKWAIEEQGVSKYFKVNKSPMK---- 103 Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSIL 212 + + I R + + +E A + K+I Sbjct: 104 --------ITYKPRGNYIVFRGAQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTIT 155 Query: 213 GFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDWKRYQIDTRTVEGIDSGF 265 + + N R W + E+ + + I F Sbjct: 156 NSLLRGELADGLFYKFFYSYNPPKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAF 215 Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325 E + + + A E G+ V F I+ + + + + + G D Sbjct: 216 IEEVNATRAKNPKRAEWEYDGKAIGSGVVPFDNLRVIKGCI-TDEMAANFDNIRNGLDF- 273 Query: 326 GEGGDKTVVVFRR 338 G D V Sbjct: 274 GYATDPLAFVRWH 286 >gi|256964712|ref|ZP_05568883.1| terminase large subunit G2p [Enterococcus faecalis HIP11704] gi|256955208|gb|EEU71840.1| terminase large subunit G2p [Enterococcus faecalis HIP11704] Length = 430 Score = 43.8 bits (101), Expect = 0.049, Method: Composition-based stats. Identities = 28/253 (11%), Positives = 71/253 (28%), Gaps = 23/253 (9%) Query: 94 NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153 A +++ + R ++ + I + ++ +++ ++ + +F++ + Sbjct: 50 IAHIIV-QLIMRYPVNAVAIRYVDNTIELSIFEQIKWAIEEQGVSKYFKVNKSPMK---- 104 Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSIL 212 + + I R + + +E A + K+I Sbjct: 105 --------ITYKPRGNYIVFRGAQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTIT 156 Query: 213 GFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDWKRYQIDTRTVEGIDSGF 265 + + N R W + E+ + + I F Sbjct: 157 NSLLRGELADGLFYKFFYSYNPPKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAF 216 Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325 E + + + A E G+ V F I+ + + + + + G D Sbjct: 217 IEEVNATRAKNPKRAEWEYDGKAIGSGVVPFDNLRVIKGCI-TDEMAANFDNIRNGLDF- 274 Query: 326 GEGGDKTVVVFRR 338 G D V Sbjct: 275 GYATDPLAFVRWH 287 >gi|73963567|ref|XP_537429.2| PREDICTED: similar to CG7922-PA [Canis familiaris] Length = 2047 Score = 43.8 bits (101), Expect = 0.049, Method: Composition-based stats. Identities = 25/250 (10%), Positives = 67/250 (26%), Gaps = 19/250 (7%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + G+GKT + A +M P ++ +A ++ + ++ ++ Sbjct: 105 CNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQ----QIEACYRVMGI 160 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + + E+ + + P + Sbjct: 161 PQSHMAEMTGTTQAFTRKEIWRSKRVLFLTPQVMVNDLSRGACP-------AAEIKCLVI 213 Query: 198 DEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256 DEA + ++ + + + S T + I + ++ + Sbjct: 214 DEAHKALGNYAYCQVVRELFKYTNHFRILALSATP-GSDIKAIQQVITNLRIGQIELRSE 272 Query: 257 TVEGI---DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 I + + A + Q + ++ I N + M R+ + Sbjct: 273 DSPDILPYSHERRVEKLVVPLGEELAAIQKAYIQVLEAFASSLIQRNIL---MRRDIPNL 329 Query: 314 LYAPLIMGCD 323 +I+ D Sbjct: 330 TKYQIILARD 339 >gi|51596194|ref|YP_070385.1| gpP phage P2 terminase [Yersinia pseudotuberculosis IP 32953] gi|170024552|ref|YP_001721057.1| hypothetical protein YPK_2327 [Yersinia pseudotuberculosis YPIII] gi|51589476|emb|CAH21098.1| similar to gpP phage P2 TERMINASE [Yersinia pseudotuberculosis IP 32953] gi|169751086|gb|ACA68604.1| protein of unknown function DUF264 [Yersinia pseudotuberculosis YPIII] Length = 587 Score = 43.4 bits (100), Expect = 0.050, Method: Composition-based stats. Identities = 33/328 (10%), Positives = 70/328 (21%), Gaps = 40/328 (12%) Query: 60 EAVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 E++ + + F+ R +G T +W L G + + ++ S+ Sbjct: 142 ESMFDYQRNWYEAGLSPDFRIRNFLKSRQVGATYFFSWEALLDALDT-GRNQMFVSASKA 200 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH-------YTI 171 Q + + E+ L + + + + Sbjct: 201 QAHQ-FKNYIVAAARQVDVDLRGEVIILPNGAEMHFLGTNASTAQGRPGNLYLDEYFWIP 259 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP---NRFWIMTS 228 + + S T G R I S Sbjct: 260 GFQKLRRAASGMASQKRYRST---YFSTPSSTSHEAYPFWAGTLFNKGKAKDKRIEIDVS 316 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 R G + + +++ ++G F + D D + F Sbjct: 317 YPRLAGGRLCED-----KQYRQIVTIEDALKGGCDLFDIDELRNENSDQD-FENLFMCGF 370 Query: 289 PQQEVNNFIPHNYIEEAMSREAIDD----------LYAPLIMGCDIAGEGGDKTVVVFRR 338 + F + P+ +G D A G D Sbjct: 371 IDDNASTFKLAEMQRCMVDSWEKWTDVKLLALRPFGDRPVWIGYDPASTG-DSAGCAVIA 429 Query: 339 GNI-------IEHIFDWSAKLIQETNQE 359 + + W + Sbjct: 430 PPVVAGGKFRVLERHQWKGMDFADQASN 457 >gi|330796515|ref|XP_003286312.1| hypothetical protein DICPUDRAFT_150267 [Dictyostelium purpureum] gi|325083739|gb|EGC37184.1| hypothetical protein DICPUDRAFT_150267 [Dictyostelium purpureum] Length = 2271 Score = 43.4 bits (100), Expect = 0.050, Method: Composition-based stats. Identities = 20/179 (11%), Positives = 48/179 (26%), Gaps = 11/179 (6%) Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 M A++ + V+ S + + G GKT L ++ L++ P I+ A S Sbjct: 1370 MNALNDQQRNAVDQSLFSEGITLVHGLTGTGKTHLVLNLISILLAVNPNFKILVCAPSHG 1429 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT--- 175 + + + + + ++ + + + Sbjct: 1430 SVDEISRRLMKSKFYSN-NMEQYSPVITRIGSLENISKDIHPICLLGKESKIRANTLKNT 1488 Query: 176 ---YSEERPDTFVGPHNTH-GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 S N + D+A S + + + I+ + Sbjct: 1489 NICLSTLSASAMDFRRNHFIPSIIIIDDA---TQSCEISTIIPLASSSNVKKLILVGDP 1544 >gi|88860789|ref|ZP_01135426.1| putative ATP-dependent RNA helicase DbpA [Pseudoalteromonas tunicata D2] gi|88817384|gb|EAR27202.1| putative ATP-dependent RNA helicase DbpA [Pseudoalteromonas tunicata D2] Length = 460 Score = 43.4 bits (100), Expect = 0.050, Method: Composition-based stats. Identities = 25/190 (13%), Positives = 49/190 (25%), Gaps = 12/190 (6%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGM-SIICIANSETQLKNTLWAEVSKWLSMLPH- 137 A G GKT A +L + R + + + E+ K +P+ Sbjct: 44 VIAQAKTGSGKTAAFALGLLENLDVRKYRVQALVLCPTRELADQVAQ-EIRKLARGIPNV 102 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + + + P E + I E + +H + Sbjct: 103 KVLALCGGVPMGPQIGSLEH---------GAHIIVGTPGRIEDHLSRRTLDLSHVNTLVL 153 Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257 DEA D+ + L + P + + + K + Sbjct: 154 DEADRMLDMGFSAALDAIIDQTPRDRQTLFFSATFPEKIQQIASRTMRDPVKVEVESSHN 213 Query: 258 VEGIDSGFHE 267 I F++ Sbjct: 214 NVNIRQYFYK 223 >gi|46137087|ref|XP_390235.1| hypothetical protein FG10059.1 [Gibberella zeae PH-1] Length = 1608 Score = 43.4 bits (100), Expect = 0.050, Method: Composition-based stats. Identities = 21/211 (9%), Positives = 58/211 (27%), Gaps = 20/211 (9%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +P WQ + ++ +D + + A GKT ++ + M ++ Sbjct: 682 EPDAWQRDVLDCIDANES------------VLVVAPTSAGKTFISFYAMKKVLEESDDGV 729 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ +A ++ + +++ R ++H + Q + + + Sbjct: 730 LVYVAPTKALVNQIAAEIEARFSKSY--RQQSGKSIWAVHTRDYRINNPSQCQILVTVPH 787 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM--- 226 + S + + DE + + L P + Sbjct: 788 MLQIMLLSPTNAVGTNAW-SRRVKRIIFDEVHCIGQADDGVVWEQLLLLAPCPIIALSAT 846 Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257 N L W + + + + Sbjct: 847 VGNPNELKDWLA--MSQAQKGYDMKMVVHED 875 >gi|218688939|ref|YP_002397151.1| putative large subunit terminase [Escherichia coli ED1a] gi|218426503|emb|CAR07331.1| putative large subunit terminase [Escherichia coli ED1a] Length = 568 Score = 43.4 bits (100), Expect = 0.050, Method: Composition-based stats. Identities = 26/241 (10%), Positives = 55/241 (22%), Gaps = 31/241 (12%) Query: 6 STDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVH 65 S EQ L M + + + + + L F Q + ++ Sbjct: 14 SEMTGTEQRLFIMTKLS----NPWWRLNHLYKIQNEKGELVTFRM-RPAQRQLFRSMHN- 67 Query: 66 CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW 125 K I R +G +T +L P + +A + Sbjct: 68 -------------KNIILKARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQAASEIFR 114 Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185 +++ LP + + ++ Sbjct: 115 TKIAVPFDHLPDWLRASFTIVERRSGASG-----GYILFGHGSSIQVATSFRSGTVQRLH 169 Query: 186 GPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL 245 + + P + G ++ S + G FY++ N Sbjct: 170 ISEHGKI-------CAKYPAKAKELRTGTLNAVSDECIIFDESTAEGVGGDFYEMSNRAQ 222 Query: 246 E 246 E Sbjct: 223 E 223 >gi|83643297|ref|YP_431732.1| Mu-like prophage FluMu protein gp28 [Hahella chejuensis KCTC 2396] gi|83631340|gb|ABC27307.1| Mu-like prophage FluMu protein gp28 [Hahella chejuensis KCTC 2396] Length = 581 Score = 43.4 bits (100), Expect = 0.050, Method: Composition-based stats. Identities = 38/319 (11%), Positives = 80/319 (25%), Gaps = 68/319 (21%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 + + +++ + + + R IG T AW T I A Sbjct: 137 ETIRKELFYDYQHRWHDNKSQRTRFILKS-RQIGATYYFAWEAFQDAITSGDNQIFLSA- 194 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 S +Q + A + K+ +++ S G + + + RT Sbjct: 195 SRSQA-DIFKAYILKFAREY------------FDTELKGVDVIPLSNGAELRFVSTNGRT 241 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW--IMTSNTRRL 233 G H ++ DE PD + + + ++ W S Sbjct: 242 A--------QGYHGH----LYIDEVFWIPD--FDRLNKLASGMAAHKKWRKTYFSTPSVK 287 Query: 234 NGWFYDIFNIPL-------------------------EDWKRYQIDTRTVEGIDSGFHEG 268 + Y +++ + R + + Sbjct: 288 SHGAYTLWSGERYNESRRHKVEFDLSRAALREGQLGPDKVWRNVVTVEDAANQGCDLFDI 347 Query: 269 IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS-----------REAIDDLYAP 317 + + F + + + + + R+ P Sbjct: 348 DELKQEYTEAEFNNLFMCAFMEAGL-SVFKLDDLLSCAVCSSDVWPDFKPRQPRPFANYP 406 Query: 318 LIMGCDIAGEGGDKTVVVF 336 + +G D A G TVVV Sbjct: 407 VWLGYDPARTGDRSTVVVV 425 >gi|308182843|ref|YP_003926970.1| hypothetical protein HPPC_03450 [Helicobacter pylori PeCan4] gi|308065028|gb|ADO06920.1| hypothetical protein HPPC_03450 [Helicobacter pylori PeCan4] Length = 1606 Score = 43.4 bits (100), Expect = 0.051, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 55/198 (27%), Gaps = 35/198 (17%) Query: 29 KNFVMRFFPWGIKG-------KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81 ++F+ W PL +P Q E +E + + N Sbjct: 145 EDFIYSRIDWEKFDPTKTEDEIPLCDKKKPRPHQTEAIEKTKEYFSNPKNARGK-----L 199 Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN----------------TLW 125 I A G GKT + L ++ + + +A S L + Sbjct: 200 IMAC-GTGKTYTS----LKIMESLDPKITLFLAPSIALLSQTFREYAQEKSEPFYASIVC 254 Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI--DSKHYTITCRTYSEERPDT 183 ++ S + L L PS ++L ++K + I S R Sbjct: 255 SDDKTAQSKNEDNDDIKFSELPLKPSTRLEDILSVHKKAQKENKRFIIFSTYQSALRIKE 314 Query: 184 FVGPHNTHGMAVFNDEAS 201 + DEA Sbjct: 315 AQEAGLGEIDLIICDEAH 332 >gi|121608006|ref|YP_995813.1| type III restriction enzyme, res subunit [Verminephrobacter eiseniae EF01-2] gi|121552646|gb|ABM56795.1| type III restriction enzyme, res subunit [Verminephrobacter eiseniae EF01-2] Length = 769 Score = 43.4 bits (100), Expect = 0.051, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 59/193 (30%), Gaps = 16/193 (8%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG-MSI 110 +QL+ + + N + + A G GKT A+ ++W + I Sbjct: 162 RYYQLKAINRTVEAIANGQNRA------LLVMAA-GTGKTC-TAFQIIWRLWKSDSRKRI 213 Query: 111 ICIANS---ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 + +A+S Q + + L ++ + W + + + Sbjct: 214 LFLADSNTLINQAMVNDFRPFKSAMIKLSFDAKGVERADAPGERKWGDRKTAKEVDKSYE 273 Query: 168 HYTITCR---TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224 Y +CR E+ D + + DE S+ + + Sbjct: 274 IYLASCRIVTGTGEKHNDIYKQFRPDFFDLIVVDECHH-GSAAEDSVWREILDYFASATQ 332 Query: 225 IMTSNTRRLNGWF 237 I S+T + +F Sbjct: 333 IGFSSTAVDSDYF 345 >gi|256619492|ref|ZP_05476338.1| terminase large subunit G2p [Enterococcus faecalis ATCC 4200] gi|256599019|gb|EEU18195.1| terminase large subunit G2p [Enterococcus faecalis ATCC 4200] Length = 429 Score = 43.4 bits (100), Expect = 0.051, Method: Composition-based stats. Identities = 28/253 (11%), Positives = 71/253 (28%), Gaps = 23/253 (9%) Query: 94 NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153 A +++ + R ++ + I + ++ +++ ++ + +F++ + Sbjct: 49 IAHIIV-QLIMRYPVNAVAIRYVDNTIELSIFEQIKWAIEEQGVSKYFKVNKSPMK---- 103 Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSIL 212 + + I R + + +E A + K+I Sbjct: 104 --------ITYKPRGNYIVFRGAQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTIT 155 Query: 213 GFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDWKRYQIDTRTVEGIDSGF 265 + + N R W + E+ + + I F Sbjct: 156 NSLLRGELADGLFYKFFYSYNPPKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQVF 215 Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325 E + + + A E G+ V F I+ + + + + + G D Sbjct: 216 IEEVNATRAKNPKRAEWEYDGKAIGSGVVPFDNLRVIKGCI-TDEMAANFDNIRNGLDF- 273 Query: 326 GEGGDKTVVVFRR 338 G D V Sbjct: 274 GYATDPLAFVRWH 286 >gi|170588285|ref|XP_001898904.1| DEAD/DEAH box helicase family protein [Brugia malayi] gi|158593117|gb|EDP31712.1| DEAD/DEAH box helicase family protein [Brugia malayi] Length = 726 Score = 43.4 bits (100), Expect = 0.051, Method: Composition-based stats. Identities = 18/173 (10%), Positives = 49/173 (28%), Gaps = 10/173 (5%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGM-SIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + A G GKT + + + + ++ + G ++ +A + + ++ ML Sbjct: 84 LLVQAKSGTGKTMVFSLLAVENLNAQFGRPQVLIVAPTREIASQIV-----SYIRMLAPS 138 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + + + G + E + + + T +H D Sbjct: 139 ----VIHVGMFVGGNEKGVAEDIQKLRKSIHIVVGTTGRLCHLVRINALRLSHVRLFVLD 194 Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY 251 EA + + + + P I + + + + Sbjct: 195 EADKLMEDSFQKEINYLFSTLPPEKQIAVFSATYPYRLDTTLMHYMRDVHLVR 247 >gi|120402158|ref|YP_951987.1| hypothetical protein Mvan_1146 [Mycobacterium vanbaalenii PYR-1] gi|119954976|gb|ABM11981.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length = 551 Score = 43.4 bits (100), Expect = 0.051, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 46/172 (26%), Gaps = 6/172 (3%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 + + + H S + ++ + + I G G GKT L L R G + + Sbjct: 199 EDAADILTEH-QSVILDAIRLLNRVEIRGGAGSGKTFLAMEQARRLA--RDGQRVALVCY 255 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 S L + L + W + E L + + Sbjct: 256 S-HGLASYLERITAAWNRRQQPAYVGEFHDLGKRWGAPAGPDESLRTEQTVQFWEHDLPA 314 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227 E A+ DEA D +L + ++ T Sbjct: 315 QMTELAMQLDD--GQRFDAIVVDEAQDFADAWWDPLLAALKDDETGGLYVFT 364 >gi|295402829|ref|ZP_06812763.1| type III restriction protein res subunit [Geobacillus thermoglucosidasius C56-YS93] gi|294975136|gb|EFG50780.1| type III restriction protein res subunit [Geobacillus thermoglucosidasius C56-YS93] Length = 954 Score = 43.4 bits (100), Expect = 0.052, Method: Composition-based stats. Identities = 33/243 (13%), Positives = 78/243 (32%), Gaps = 51/243 (20%) Query: 10 KLEQELHEMLMHAE--CVLSFKNFVMRFFPWGIKGKPLEHFS---------------QPH 52 + + + + + ++E +L F+ + + + LE+F +P+ Sbjct: 150 EQTKRIFDQIWNSEETVILD-SEFIHYYSEFFEAKRKLENFKAAETKEHYQIKHNGIKPN 208 Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 Q + + + + N K I A G GKT L+A + + ++ Sbjct: 209 AMQEKALRNLQNTRKNGNN-------KGVIIAATGTGKTYLSA----FDVKAFNPKKLLF 257 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 IA+ E L N + + ++P + F + ++ + Sbjct: 258 IAHREELLDNA----IKTFQQVIPKQEIFGKITGTVKEFDKP---------------YLF 298 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232 S + + + DE + ++ +F P +T+ R Sbjct: 299 STVQSLHKDEILQRFKRDEFDYIIVDEFHHAEAPTYRKVIDYF---QPKFLLGLTATPER 355 Query: 233 LNG 235 ++G Sbjct: 356 MDG 358 >gi|225155111|ref|ZP_03723606.1| hypothetical protein ObacDRAFT_9308 [Opitutaceae bacterium TAV2] gi|224804058|gb|EEG22286.1| hypothetical protein ObacDRAFT_9308 [Opitutaceae bacterium TAV2] Length = 310 Score = 43.4 bits (100), Expect = 0.053, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 47/171 (27%), Gaps = 12/171 (7%) Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL--------SMLPH 137 R GK+ L + L + PG+ I+ + + E W + Sbjct: 40 RQGGKSYLLSNEALDWMMETPGVLTSIISAAIALGTEIIVKEAQSWRDHLAKLKAVAAAN 99 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 E + + G+ + H TC P G + Sbjct: 100 ALKLETNADDIDFDGFCDLFEHSKLEAKLWHDRTTCSRTRVIAP-NPNTAVGWTGH-IIG 157 Query: 198 DEASGTP--DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246 DE P + ++I F R + T+ + Y++ P Sbjct: 158 DEFGRWPNCQEVLEAIEPFMESNPQFRLRLATTPPPDDKHYSYEMLLPPEG 208 >gi|66827407|ref|XP_647058.1| hypothetical protein DDB_G0268914 [Dictyostelium discoideum AX4] gi|60475110|gb|EAL73046.1| hypothetical protein DDB_G0268914 [Dictyostelium discoideum AX4] Length = 4540 Score = 43.4 bits (100), Expect = 0.053, Method: Composition-based stats. Identities = 26/204 (12%), Positives = 56/204 (27%), Gaps = 21/204 (10%) Query: 43 KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFK--------CAISAGRGIGKTTLN 94 + S RW E + H + +N S I G GKT Sbjct: 3531 IEAYNQSGKDRW--EIPTLLKDHYNQTLNESQLAAINESLVHSSITLIQGPPGTGKTHTI 3588 Query: 95 AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS--- 151 ++ +++ P I+ S + + K L + + + + Sbjct: 3589 TSLISIILAINPDFKILVCGPSHAAVDEVAKRVIIKGL-LNDRGEKYIPTMVRIGLKDNI 3647 Query: 152 --GWYAELLEQSMGIDSKHYT--ITCRTYSEERPDTFVGPH-NTHGMAVFNDEASGTPDI 206 ++ + +D K + +S + V DEA+ + + Sbjct: 3648 QDPIVHDICVFNRRLDEKKMILEHSSICFSTLSASGSNLVQSSFKPNVVIVDEATQSCET 3707 Query: 207 INKSILGFFTELNPNRFWIMTSNT 230 I+ + I+ + Sbjct: 3708 --SCIIPLSLGAKSMKKLILVGDP 3729 >gi|260774258|ref|ZP_05883173.1| CRISPR-associated helicase Cas3 [Vibrio metschnikovii CIP 69.14] gi|260611219|gb|EEX36423.1| CRISPR-associated helicase Cas3 [Vibrio metschnikovii CIP 69.14] Length = 763 Score = 43.4 bits (100), Expect = 0.053, Method: Composition-based stats. Identities = 25/194 (12%), Positives = 45/194 (23%), Gaps = 17/194 (8%) Query: 68 SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET---QLKNTL 124 P +F + G GKT + L +I + + Q Sbjct: 247 RLKAKLTPGLFTLTV--PTGGGKTLSSMAFALEHALAHNMRRVIYVIPFTSIIEQNAQVF 304 Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE-LLEQSMGIDSKHYTITCRTYS------ 177 + H + E + + +++ + T Sbjct: 305 RDAFGELGEASVLEHHSNFDDRKIKDKEGAEETRDKLKLAMENWDMPVVVTTAVQFFESL 364 Query: 178 -EERPDTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTRR 232 +RP HN G + DEA P + I + + Sbjct: 365 FADRPSRCRKLHNISGSVIILDEAQTLPLKFLRPVMAVIDELARNYGCSIVLCTATQPAL 424 Query: 233 LNGWFYDIFNIPLE 246 F + F E Sbjct: 425 CEPDFTNGFTNVRE 438 >gi|145351012|ref|XP_001419882.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580115|gb|ABO98175.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 440 Score = 43.4 bits (100), Expect = 0.053, Method: Composition-based stats. Identities = 34/315 (10%), Positives = 71/315 (22%), Gaps = 51/315 (16%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGR--------GIGKTTLNAWMMLWLISTRPG 107 E + + + I +G G GKT L I ++P Sbjct: 38 KELLRVTAQFKTPSPIQAQSWP---IIMSGHDMVGIAATGSGKTLAFGMPALTQIHSQPP 94 Query: 108 MS-----IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162 + +A + + T R + + M Sbjct: 95 CKPGQPICLVLAPTRELAQQTA-KVFDDAGEASGVRCVCVYGGAPKYEQ-------KAQM 146 Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS---ILGFFTELN 219 I + DEA D+ + + T + Sbjct: 147 KAGGGAAVIVATPGRLRDFMEEGVIKLDRVTMLVLDEADRMLDLGFEPEIRAIAGATRAD 206 Query: 220 PNRFWIMTSNTRRLNGWFYDIF-----------NIPLEDWKRYQIDTRTVEGIDSGFHEG 268 + + + + + ++ + D Sbjct: 207 RQTVMFSATWPQSVQSLASEFMCNPIKVRIGAEGLKASQSITQIVEVVEPQDKDRHLARV 266 Query: 269 IISRYGLDSDVARIEILGQFPQQEVN--NFIPHNY-------IEEAMSREAIDDLYA--- 316 + G +V R I G + ++ N + + RE D + Sbjct: 267 MKQYLGKGKEVPRTLIFGLYKKECANLHQRLSREWPAVCIHGDMSQHDREKSVDAFKKGT 326 Query: 317 -PLIMGCDIAGEGGD 330 +++ D+A G D Sbjct: 327 SRILIATDVAARGLD 341 >gi|60680960|ref|YP_211104.1| putative type I restriction enzyme [Bacteroides fragilis NCTC 9343] gi|60492394|emb|CAH07163.1| putative type I restriction enzyme [Bacteroides fragilis NCTC 9343] Length = 783 Score = 43.4 bits (100), Expect = 0.053, Method: Composition-based stats. Identities = 42/324 (12%), Positives = 87/324 (26%), Gaps = 44/324 (13%) Query: 7 TDQKLEQELHEMLMHAECVLSFKNFVMRFFPWG--IKGKPLEHFSQ---PHRWQLEFMEA 61 T ++ E +L + E + + P I P + + P +Q ++ Sbjct: 128 TGKETEIKLEDFPTEEELYNRYLA-SKNYTPDELNIIETPFYYDAHSHEPRYYQRIAVDR 186 Query: 62 VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121 + + G GKT ++ L + I+ +A+ + Sbjct: 187 TVEAIAKGQQ-------RVLVVMATGTGKTFTAFQIIHRLHKSGAKKKILYLAD-----R 234 Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 N L + + + + + + + E RP Sbjct: 235 NILIDQTM-------TQDFKPFKKFMTKITSVGEGEEKIDSSYEMYMALYHQLVGKEGRP 287 Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241 D F+ + DE + + N MT+ + G Sbjct: 288 DPFLEVRPNFFDLIIVDECHRGSAKDDSAWRKVLEYFNTATQIGMTATPKADEG------ 341 Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301 +D +GI D +A + F ++ + P Sbjct: 342 --------ANNLDYFGEPVYTYSLLQGI-----NDGFLAPYRVTADFINVDLQGWTPEEG 388 Query: 302 IEEAMSREAIDDLYAPLIMGCDIA 325 + + +E LY +G D+A Sbjct: 389 EIDLLGKEIEQKLYQRQNIGRDLA 412 >gi|258539063|ref|YP_003173562.1| phage-related terminase large subunit [Lactobacillus rhamnosus Lc 705] gi|257150739|emb|CAR89711.1| Phage-related terminase, large subunit [Lactobacillus rhamnosus Lc 705] Length = 570 Score = 43.4 bits (100), Expect = 0.053, Method: Composition-based stats. Identities = 39/322 (12%), Positives = 85/322 (26%), Gaps = 60/322 (18%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFK---CAISAGRGIGKTTLNAWMMLWLISTRPG-- 107 +Q + ++ V+ +P I + IS R GK+ L + ++L+ Sbjct: 74 PFQKFIIGSIY----GWVDKDDPNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPA 129 Query: 108 -MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 + A ++ + ++ V L L + D Sbjct: 130 NKRQLYTAANDRKQAGIVFGMVKDRLRAL--------------MRKDPGIKRMVKITRDE 175 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS--GTPDIINKSILGFFTELNPNRFW 224 T DT DE + T D+I G + F Sbjct: 176 LVNLDDGSTIRSFSRDTG-LVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFI 234 Query: 225 IMTSNTRRLNGWFYDIFNIPL---------EDWKRYQIDTRTVEGIDSG--FHEGI---- 269 I T+ F + E + + + V+ +D + + Sbjct: 235 ISTAGFDMNVPMFQQNYPYAKKVLSGEETAERYFAFIAEQDNVQEVDDPNSWIKSNPLLD 294 Query: 270 -----------------ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 +R + ++ + Q ++++ + + A + D Sbjct: 295 VDIVHDQITDYLTTKLSQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTDKPD 354 Query: 313 DLYAPLIMGCDIAGEGGDKTVV 334 +G D+ D + Sbjct: 355 IRGQRAWIGIDVGRT-SDLFAI 375 >gi|19074342|ref|NP_585848.1| PRE-mRNA SPLICING HELICASE [Encephalitozoon cuniculi GB-M1] gi|19068984|emb|CAD25452.1| PRE-mRNA SPLICING HELICASE [Encephalitozoon cuniculi GB-M1] Length = 1481 Score = 43.4 bits (100), Expect = 0.053, Method: Composition-based stats. Identities = 22/170 (12%), Positives = 44/170 (25%), Gaps = 20/170 (11%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + A G GKT + +L R M + I + + +S+W S Sbjct: 264 NVLVCAPTGSGKTVIGMMSILREAERRKKMRVGYIVPMKALAREIC-RTISRWFSGYGIS 322 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 ++ S SG+ + + + + R V D Sbjct: 323 V---VEHTSDVYSGYAHLERTGVIVSTPEKFDVLTRNTDL------------WFDLVVID 367 Query: 199 EASGTPDIINKSILGFFT----ELNPNRFWIMTSNTRRLNGWFYDIFNIP 244 E D ++ + + ++ + N P Sbjct: 368 EIHMVGDSRGAAVEAVVARMAVRGGCRIVGLSATLPNYMDVGAFIGCNDP 417 >gi|322703686|gb|EFY95291.1| DEAD/DEAH box helicase, putative [Metarhizium anisopliae ARSEF 23] Length = 1561 Score = 43.4 bits (100), Expect = 0.054, Method: Composition-based stats. Identities = 28/217 (12%), Positives = 55/217 (25%), Gaps = 25/217 (11%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P WQ + ++A+D + + A GKT ++ + M ++ + I Sbjct: 498 PDAWQRDVLDAIDANKS------------LFVVAPTSAGKTFVSFYAMKKVLQSNDDDVI 545 Query: 111 ICIANSETQLKNT---LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 + +A ++ + + A SK S W + ++L Sbjct: 546 VYVAPTKALVNQIAAEVQARFSKAYSTPGRSVWAIHTRDYRINNPTGCQILITV----PH 601 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM- 226 I S + + DE I L P + Sbjct: 602 MLQIMLLAPSNAKTANSWSLRVKR---IIFDEVHCIGQSDEGVIWEQLLLLAPCPIIALP 658 Query: 227 --TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI 261 N W + + R + Sbjct: 659 ATVGNPMDFGAWLQGSEKAKGHELEMIVHPHRYSDLR 695 >gi|311120260|gb|ADP69217.1| putative terminase large subunit [Leuconostoc phage phiMH1] Length = 581 Score = 43.4 bits (100), Expect = 0.054, Method: Composition-based stats. Identities = 36/308 (11%), Positives = 77/308 (25%), Gaps = 55/308 (17%) Query: 69 NVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMS----IICIANSETQLKNT 123 + ++ AI++ RG GKT L + + + + II +N+ Q K Sbjct: 80 RNKKTGGKRYRKAIASIARGQGKTYLASVLATYDFFVQSYKKNNQDIIVASNTVAQSKK- 138 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 L+ + ++ + +M + Sbjct: 139 LYGYIRGTINKM------RQGIFKKRDKDIADTYETITMKSKNNVIVRLS-----ADGGK 187 Query: 184 FVGPHNTHGMAVFNDEAS-GTPDIINKSIL-GFFTELNPNRFWIMTS--NTRRL------ 233 F H DEA I G I T+ N Sbjct: 188 FDSYHA---TTAIFDEAGDQKSREAFGKITSGQVKIEEALFLMISTAYQNPNAPLREDIR 244 Query: 234 -------------NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV- 279 + +F +++ D + + + GL S+ Sbjct: 245 NVSNDIKSGAHELDDFFLAVWSQDSPDEVFKPETWEKSNPLLGLESQHMKLLNGLVSERN 304 Query: 280 ----------ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329 ++ + + E N ++ A+ ++ + +G D + Sbjct: 305 TLMSQGKINDFLVKNMNIWLNAEENAAFSLEDVQNAVIQDFDMH-NRQVYIGFDNSMTSD 363 Query: 330 DKTVVVFR 337 D + Sbjct: 364 DAALAFVF 371 >gi|302529524|ref|ZP_07281866.1| ATPase [Streptomyces sp. AA4] gi|302438419|gb|EFL10235.1| ATPase [Streptomyces sp. AA4] Length = 1232 Score = 43.4 bits (100), Expect = 0.054, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 38/124 (30%), Gaps = 7/124 (5%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM-LPHR 138 A+ G GKT L ++ L+ R G ++ +NS ++N L A + M R Sbjct: 858 LAVQGPPGAGKTYLAGKLIAHLV--RSGRTVGVTSNSHKAVENVLSAAMENAPEMACAKR 915 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 L + ++ + + ++ + D Sbjct: 916 AKRTPDPSLPWEQPKTNTALVRWREENNTGHLVGGTAWTFANA----AVREEPFDVLVID 971 Query: 199 EASG 202 EA Sbjct: 972 EAGQ 975 >gi|167745751|ref|ZP_02417878.1| hypothetical protein ANACAC_00444 [Anaerostipes caccae DSM 14662] gi|167654782|gb|EDR98911.1| hypothetical protein ANACAC_00444 [Anaerostipes caccae DSM 14662] Length = 915 Score = 43.4 bits (100), Expect = 0.054, Method: Composition-based stats. Identities = 31/251 (12%), Positives = 63/251 (25%), Gaps = 22/251 (8%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q ++ D + K I A G GKTTL + R G + Sbjct: 15 RPYQERILDRADTYLKDG---------KIHIVAPPGSGKTTLG-----IELIRRLGRPCL 60 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 ++ S + L ++ + + + L M + ++ Sbjct: 61 ILSPSAVIRQQWLERVKEAFIQKDDQSLLSDDIHAPALITSVTYQALHFGMEQINGPKSV 120 Query: 172 T-CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 + + + DE KS+ F ++ +T+ Sbjct: 121 FEAEQEDSKVFNLINAVKAAEIGTICLDECHHLRSEWWKSLEKFMMKMENVCVVSLTATP 180 Query: 231 RRLN------GWFYDIFNIPLEDWKRYQI-DTRTVEGIDSGFHEGIISRYGLDSDVARIE 283 + + I E + D D + D R E Sbjct: 181 PYDSTSAQWERYIGLCGEIDEEIIVPELVQDHSLCPHQDYVYFNYPTEDEKAQIDAFRGE 240 Query: 284 ILGQFPQQEVN 294 + F + + Sbjct: 241 VRKVFQEMTAD 251 >gi|268323389|emb|CBH36977.1| probable ATP-dependent RNA helicase [uncultured archaeon] Length = 392 Score = 43.4 bits (100), Expect = 0.055, Method: Composition-based stats. Identities = 36/353 (10%), Positives = 81/353 (22%), Gaps = 64/353 (18%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 K E F +P Q + + + A G GKT A ++ Sbjct: 15 KSIEEEGFERPTEIQEKSISLILSGKD------------VIAEAATGSGKTLAFAADIIE 62 Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 G+ + + + + + + + L + + Sbjct: 63 KTEKGTGIRTLVLTPTRELAQQV----------AAALSLFSKYKPLRIVAVFGGVSIN-P 111 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA------SGTPDIINKSILGF 214 + + + + + + DEA PD+ Sbjct: 112 QITQLRRADVVVGTPGRILDHIGRRTLNLSKVNILVLDEADRMLDMGFIPDVKKIVGE-- 169 Query: 215 FTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-------DWKRYQIDTRTVEGIDSGFHE 267 N + +R + P+ D + V + F Sbjct: 170 -CPRNRQTLLFSATISREITVLARKYQKDPISVSAEAYVDPSKLTQLYYDVPD-NLKFSL 227 Query: 268 GIISRYGLDSDVARIEI----LGQFPQQEVNNF------IPHNYIEEAMSREAI--DDLY 315 + +S++ + F + I ++ R Sbjct: 228 LVHLLKHEESELVMVFCNTRTNTDFVASNLKALGIGAMAIHGGLTQDKRDRVMKQFHSHD 287 Query: 316 APLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDW----SAKLIQETNQEGCPVG 364 +++ D+A G D + HI+++ K G Sbjct: 288 VRVLVCTDVAARGLD--------IPHVSHIYNYDIPMYGKDYIHRIGRTARAG 332 >gi|328698487|ref|XP_001948012.2| PREDICTED: hypothetical protein LOC100166297 [Acyrthosiphon pisum] Length = 2033 Score = 43.4 bits (100), Expect = 0.055, Method: Composition-based stats. Identities = 25/213 (11%), Positives = 57/213 (26%), Gaps = 17/213 (7%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 +S G+GKT + A +M P II +A + V++ + Sbjct: 190 NTLVSLPTGMGKTFIAAVVMYNFYRWYPMGKIIFMAPTR--------PLVAQQIEAC--- 238 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH--NTHGMAVF 196 + + + + + + + + + + Sbjct: 239 --HSIMGIPREMTFEMTGNIPPEQRYLAWNKYRVFFLTPQVLANDLSLNKCPSDTFRCII 296 Query: 197 NDEASGTPDIINKS-ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255 DEA +L +E N + S T I + + + T Sbjct: 297 VDEAHRATKDYAYVQVLKRLSEENKVIRIVGLSATP-GTNVEAVTEVIRNLNISKLEFRT 355 Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 + ++ + + ++I QF Sbjct: 356 DESPDVAKYTNKKDVECISVKLTNTILDIRTQF 388 >gi|219123462|ref|XP_002182043.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217406644|gb|EEC46583.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 1565 Score = 43.4 bits (100), Expect = 0.056, Method: Composition-based stats. Identities = 29/200 (14%), Positives = 61/200 (30%), Gaps = 22/200 (11%) Query: 45 LEHFSQP--------HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96 LE+ P H W E + +S G+GKT + A Sbjct: 254 LEYKPGPVPIDESTAHEWVYPTAETFPKRQYQLEITKTALFHNTLVSLPTGLGKTLIAAA 313 Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156 ++ P +I +A + V++ + ++ +G Sbjct: 314 VLYNYYRWFPTGKVIFLAPTL--------PLVNQQVKACYDIMGIPPSDTAV-LTGKVHA 364 Query: 157 LLEQSMGIDSKHYTITCRTYSEE-RPDTFVGPHNTHGMAVFNDEASGTP-DIINKSILGF 214 + + D + + T +T ++ + ++ + V DEA + D ++ Sbjct: 365 ARREIVWRDRRVFFCTPQTVQKDLDANRCD---SSKVVCVVLDEAHKSTGDYAYVKVVER 421 Query: 215 FTELNPNRFWIMTSNTRRLN 234 E + + S T N Sbjct: 422 LEEAGAHFRVLGLSATPGTN 441 >gi|285016934|ref|YP_003374645.1| ATP-dependent DNA helicase [Xanthomonas albilineans GPE PC73] gi|283472152|emb|CBA14659.1| probable atp-dependent dna helicase protein [Xanthomonas albilineans] Length = 733 Score = 43.4 bits (100), Expect = 0.056, Method: Composition-based stats. Identities = 38/270 (14%), Positives = 69/270 (25%), Gaps = 25/270 (9%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + AG G GKT + + WL A + T +K + HR Sbjct: 27 VLAGAGSGKTRVLTHRIAWLHEVHGVPVHGMFAVTFT----------NKAAGEMRHRADL 76 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 ++++ S L + ++ D + + DE Sbjct: 77 QLRNGSRGMWIGTFHGLAHRLLRLHWQDARLPESFQVLDADDQLRLVKRVVQQLELDE-G 135 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI 261 P + + I N + YQ + Sbjct: 136 KFPPKQIAWWINQQKDEGRRAQHI---QPE----PHDVWINTLRNAYALYQERCDRAGLV 188 Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMG 321 D D+ +F + V+ F N I+ A R D ++ Sbjct: 189 DFAELLLRAHELLRDTPALLAYYRARFAEILVDEFQDTNAIQYAFVRVLAGDSGRVFVV- 247 Query: 322 CDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 G D + RG +E++ + Sbjct: 248 ------GDDDQAIYGWRGAKVENVQRFLKD 271 >gi|262383481|ref|ZP_06076617.1| helicase domain-containing protein [Bacteroides sp. 2_1_33B] gi|262294379|gb|EEY82311.1| helicase domain-containing protein [Bacteroides sp. 2_1_33B] Length = 932 Score = 43.4 bits (100), Expect = 0.056, Method: Composition-based stats. Identities = 27/186 (14%), Positives = 52/186 (27%), Gaps = 12/186 (6%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 Q + + + + I+ G G+GKT + +I G I+ Sbjct: 96 TVAQGGAFDVAEYQMTPTLKAFELPRPRLLIADGVGLGKTIEVGIFLAEMIRRSRGKRIL 155 Query: 112 CIANSE--TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 A Q + +W + L L ++Q+ + + + ID+ Sbjct: 156 VCALKSILAQFQEEIWNRFAIPLVRLDSLGVAKIQNEIPLNKNPFDYYDKTIISIDTLKN 215 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 R + E+ H + DE + + I+TS Sbjct: 216 NGRFRAWLEKT----------HWDIIVIDECHKVANDSSLRGDLAQFLAQRCDSMILTSA 265 Query: 230 TRRLNG 235 T Sbjct: 266 TPHNGS 271 >gi|10140950|ref|NP_065527.1| DNA packaging protein [Alcelaphine herpesvirus 1] gi|81920580|sp|O36378|TRM3_ALHV1 RecName: Full=Tripartite terminase subunit UL15 homolog; AltName: Full=DNA-packaging protein 29; AltName: Full=Terminase large subunit gi|2337991|gb|AAC58075.1| DNA packaging protein [Alcelaphine herpesvirus 1] Length = 686 Score = 43.4 bits (100), Expect = 0.056, Method: Composition-based stats. Identities = 18/137 (13%), Positives = 43/137 (31%), Gaps = 15/137 (10%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 R GKT + ++ L+++ + I +A+ + ++ + P ++ Sbjct: 221 PRRHGKTWIVVAIISILLASVQDLRIGYVAHQKHVANAVFTEVINTLHTFFPGKYM---- 276 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 ++ +++ I T +F DEA+ Sbjct: 277 -----------DVKKENGTIIFGLPNKKPSTLLCATCFNKNSIRGQTFQLLFVDEANFIK 325 Query: 205 DIINKSILGFFTELNPN 221 +ILGF + + Sbjct: 326 KDALPTILGFMLQKDAK 342 >gi|332637343|ref|ZP_08416206.1| helicase, RecD/TraA family protein [Weissella cibaria KACC 11862] Length = 566 Score = 43.4 bits (100), Expect = 0.057, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 35/122 (28%), Gaps = 7/122 (5%) Query: 80 CAISAGR-GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 I GR G GK+ + A ++ ++ + ++ + I + N V + + L Sbjct: 113 IQIVTGRAGSGKSYMMARLI--RLAQQQDVNTLLITPTHAAATNA-RGLVERAIGDLLDE 169 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 H + L P S + D + D Sbjct: 170 HEPDYL---LKPVDHVTIATATSFTYRNHDAMTEIARTGHFFEDAEKASRYPTYDLMIVD 226 Query: 199 EA 200 EA Sbjct: 227 EA 228 >gi|312880761|ref|ZP_07740561.1| UvrD/REP helicase [Aminomonas paucivorans DSM 12260] gi|310784052|gb|EFQ24450.1| UvrD/REP helicase [Aminomonas paucivorans DSM 12260] Length = 1200 Score = 43.4 bits (100), Expect = 0.057, Method: Composition-based stats. Identities = 33/287 (11%), Positives = 77/287 (26%), Gaps = 38/287 (13%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI- 110 W + + V + + AG G GKT + WL+++ P + Sbjct: 10 EPWMERLLGDLRPEQRQGVISPRSL---VVVQAGAGTGKTHTLSSRFAWLLASDPTCRVE 66 Query: 111 -----ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 + ++++ + + +WL P + + + G+ + L ++ Sbjct: 67 QILTLTFTEKAAREMRDRIRCRLLQWLEAEPEKLGHLRDAAARIDEGYISTLHAFALR-- 124 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-KSILGFFTELNPNRFW 224 + P++ + G +E G D ++ L + +R Sbjct: 125 ---VIRESGLVLDLDPES--RIASPCGEGALFEEMEGAFDRLDPAWFLRLLEDPWRDRCQ 179 Query: 225 IMTSNT--RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI 282 + + RL P + + D + A Sbjct: 180 DLFGDPAFPRLVNAL-----SPRRLAELVREAAELHGSRDHTPEDLWTRAPFDPVAAADR 234 Query: 283 EILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329 P+ I + + +G D+ +G Sbjct: 235 IAQALEPRLRE--------IRNLWDGDLLPS------LGADLDRDGS 267 >gi|302306720|ref|NP_983089.2| ABR142Wp [Ashbya gossypii ATCC 10895] gi|299788653|gb|AAS50913.2| ABR142Wp [Ashbya gossypii ATCC 10895] Length = 1958 Score = 43.4 bits (100), Expect = 0.057, Method: Composition-based stats. Identities = 21/149 (14%), Positives = 47/149 (31%), Gaps = 15/149 (10%) Query: 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST-RPGMSIIC 112 +Q ++ + + N+N +F + + G GKT + A + +W PG ++ Sbjct: 1130 YQFKYFNPLQTMTFHTLYNTNENVF---VGSPTGSGKT-VVAELAIWHAFRDFPGSKVVY 1185 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 IA + ++ L + + L + + + D+ T Sbjct: 1186 IAPMKALVRERLHD---------WKKRITPVTGDRLVELTGDSVPDPRDVK-DATIIITT 1235 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + + + V DE Sbjct: 1236 PEKFDGISRNWQTRKFVQNVSLVIMDEIH 1264 >gi|296133393|ref|YP_003640640.1| metal dependent phosphohydrolase [Thermincola sp. JR] gi|296031971|gb|ADG82739.1| metal dependent phosphohydrolase [Thermincola potens JR] Length = 735 Score = 43.4 bits (100), Expect = 0.057, Method: Composition-based stats. Identities = 24/179 (13%), Positives = 49/179 (27%), Gaps = 18/179 (10%) Query: 68 SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN--TLW 125 ++P +F + G GKT + L T +I + + ++ ++ Sbjct: 228 REKAVNSPGLFTLTV--PTGGGKTLSSMAFALKHAVTHGMDRVIYVIPYTSIIEQNAAVF 285 Query: 126 AEV---SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT------- 175 E+ K L + + E + + + ++ I T Sbjct: 286 REIFGEEKVLEHHSNFDYPENDIRETDSENFTRLAEKLKLAAENWDMPIVATTNVQFFES 345 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDI----INKSILGFFTELNPNRFWIMTSNT 230 R HN V DEA P +++ T + + Sbjct: 346 LFAARSSRCRKLHNIANSVVIIDEAQMIPTGYLKPCINALVELITNYHTTVVLCTATQP 404 >gi|323451003|gb|EGB06882.1| hypothetical protein AURANDRAFT_65296 [Aureococcus anophagefferens] Length = 1504 Score = 43.4 bits (100), Expect = 0.057, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 39/152 (25%), Gaps = 18/152 (11%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 A+ G GKT L A + L+ G I A S + N + A ++ Sbjct: 830 LAVQGPPGTGKTYLAARAIARLLE--DGKRIALCAPSHATVANGVLAALAVVAPS--DSI 885 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYT-----------ITCRTYSEERPDTFVGPH 188 AE E+ + + + Sbjct: 886 KVVKVGGRRRSKAPGAEDPERELAETAGVECRPRLDQTLVDEFLGGGAVLVGGSAWAFAR 945 Query: 189 NT---HGMAVFNDEASGTPDIINKSILGFFTE 217 + +F DEA P +I G + Sbjct: 946 DEARGRFDYLFVDEAGQVPAANVAAIAGCASN 977 >gi|294486119|gb|ADE87935.1| putative large terminase subunit [Escherichia phage vB_EcoM_ECO1230-10] Length = 674 Score = 43.4 bits (100), Expect = 0.058, Method: Composition-based stats. Identities = 28/245 (11%), Positives = 60/245 (24%), Gaps = 29/245 (11%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 +Q E M+ + P ++ + G +GKT L A + S + Sbjct: 59 PYQREPMDMLVD----------PDCYRVTLMWGAQVGKTML-ALCVQAYSVAAEPRSQMM 107 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 + S+ L+ W E P + ++ + Q M + + Sbjct: 108 MQPSQDDLRT--WLETK----FNPLAEECAPVNNAIAKPRGRDGVNNQKMKSYPGGFLMF 161 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF----TELNPNRFWIMTS 228 + + + DE G +G RF + S Sbjct: 162 AWS------GSPKTMRGRSAPLIVCDEVDGYERTSEGHPVGLLWQRSATFGDQRFLLEIS 215 Query: 229 NTR-RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287 + + + + + + + + I Q Sbjct: 216 TPTLKGESYIEKAYEMGDQRHFYVCCPHCD-DHVTLEWENVKWDGQRETDAETLAAIDEQ 274 Query: 288 FPQQE 292 P+ Sbjct: 275 KPETA 279 >gi|291385905|ref|XP_002709362.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 [Oryctolagus cuniculus] Length = 1759 Score = 43.4 bits (100), Expect = 0.058, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 56/201 (27%), Gaps = 27/201 (13%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P WQ E ++ VD H + I A GKT + + M ++ + Sbjct: 812 PDTWQRELLDVVDNHESA------------VIVAPTSSGKTYASYYCMEKVLKESNEGVV 859 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + +A ++ + +++ MLP+ + + + L + I Sbjct: 860 VYVAPTKALVNQVAATVQNRYAKMLPNGEAL----CGVFTRDYRHDALNCQVLIT----V 911 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEAS----GTPDIINKSILGFFTELNPNRFWIM 226 C P V DE I + +L Sbjct: 912 PACFEILLLAPHRQQWV--KKIRYVIFDEVHCLGGEIGAEIWEHLLVMIRCP-FLALSAT 968 Query: 227 TSNTRRLNGWFYDIFNIPLED 247 SN L W + ++ Sbjct: 969 ISNPEHLTAWLQSVKQYWRQE 989 >gi|322832199|ref|YP_004212226.1| terminase, ATPase subunit [Rahnella sp. Y9602] gi|321167400|gb|ADW73099.1| terminase, ATPase subunit [Rahnella sp. Y9602] Length = 588 Score = 43.4 bits (100), Expect = 0.058, Method: Composition-based stats. Identities = 32/314 (10%), Positives = 67/314 (21%), Gaps = 65/314 (20%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 I R IG T A L G + I ++ S+TQ ++ E + L Sbjct: 163 ILKSRQIGATFFFAREALLRALAT-GHNQIFLSASKTQAY--VFREYIIQFARL---AGV 216 Query: 142 EMQSLSLHP-----SGWYAELLEQSMGIDSKH-------YTITCRTYSEERPDTFVGPHN 189 E+ + + + + + + + H Sbjct: 217 ELTGDPIVLGNNGAKLIFLGTNSNTAQSHNGDLYVDEIFWIPNFQKLRKVASGMASQEHL 276 Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249 + S G N ++ Sbjct: 277 RTT---YFSTPSALTHGAYPFWSGELFNKGRE-------NPNDRIELDIGHHSLAKGR-- 324 Query: 250 RYQIDTRTVEGIDSGFHEGIIS-----------RYGLDSDVARIEILGQFPQQEVNNFIP 298 + E ++ + ++ R + +F + + P Sbjct: 325 ----LCEDGQWRQIVTIEDALAGGCNLFNIDTLKQENSAEDFRNLFMCEFVD-DQTSVFP 379 Query: 299 HNYIEEAMSREAIDDL-----------YAPLIMGCDIAGEGGDKTVVVF-----RRGN-- 340 ++ M A + Y + +G D + G D G Sbjct: 380 FAELQRCMVESAEEWQDFSPFAVRPFGYRAVWIGYDPSHTG-DSAGCAVVAPPLVDGGKF 438 Query: 341 IIEHIFDWSAKLIQ 354 + W Sbjct: 439 RVLERHQWKGMDFA 452 >gi|307315429|ref|ZP_07594994.1| protein of unknown function DUF264 [Sinorhizobium meliloti BL225C] gi|306898808|gb|EFN29464.1| protein of unknown function DUF264 [Sinorhizobium meliloti BL225C] Length = 477 Score = 43.4 bits (100), Expect = 0.059, Method: Composition-based stats. Identities = 36/262 (13%), Positives = 61/262 (23%), Gaps = 29/262 (11%) Query: 83 SAGRGIGKTTLNAWMML---------WLISTRPGMSIICIA--NSETQLKNTLWAEVSKW 131 AG +GKT A W R I+ +A S ++ + + Sbjct: 63 MAGNQLGKTLAGAAEAAMHLTGRYPDWWQGRRFDRPIVMLAGSESYELTRDGVQRLL--- 119 Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191 + + + L S +DS S + Sbjct: 120 IGPPLNEEEWGTGFLPKAAIKATTRRAGASGALDSVTVRHVSGRASTLLFKAYEQGRAKW 179 Query: 192 ----GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLE 246 V+ DE P+ + G +T R + Sbjct: 180 QANTVDYVWFDEEP--PEDVY--FEGITRTNATRGAIAVTFTPLRGLSAVVARYLMEKSP 235 Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306 D + E + +I Y AR P P EE++ Sbjct: 236 DRAVITMTIEDAEHYTPQERQRVIDSYPAHEREARTRG---VPALGSGRIFP--VTEESI 290 Query: 307 SREA-IDDLYAPLIMGCDIAGE 327 + + I G D + Sbjct: 291 RIDPFEIPKHWVQIGGLDFGWD 312 >gi|194744070|ref|XP_001954518.1| GF18303 [Drosophila ananassae] gi|190627555|gb|EDV43079.1| GF18303 [Drosophila ananassae] Length = 2184 Score = 43.4 bits (100), Expect = 0.059, Method: Composition-based stats. Identities = 19/175 (10%), Positives = 42/175 (24%), Gaps = 20/175 (11%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 + F+ + Q + + + + A G GKT + + ++ Sbjct: 1332 MYKFTHFNPIQTQIFHCLYHTDN-----------NVLLGAPTGSGKTIVAEIAIFRALNQ 1380 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 P ++ IA + +K + ++ E+ E Sbjct: 1381 NPKSKVVYIAPLKALVKERISDWEQRFQRSSLGLKVVELTGDVTPDIQAIRESQLIVTTP 1440 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219 + E H + DE + I + N Sbjct: 1441 EKWDGISRSWQTREYV---------QHVSLIVIDEIHLLGEDRGPVIEVIVSRTN 1486 >gi|166364041|ref|YP_001656314.1| putative helicase [Microcystis aeruginosa NIES-843] gi|166086414|dbj|BAG01122.1| putative helicase [Microcystis aeruginosa NIES-843] Length = 975 Score = 43.4 bits (100), Expect = 0.059, Method: Composition-based stats. Identities = 24/201 (11%), Positives = 48/201 (23%), Gaps = 14/201 (6%) Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 + + + A G GKT L ++ R G + LK Sbjct: 21 DDFQHSAIAALAAGKSVVVCAPTGSGKT-LIGEYAIYRALER-GKRVFYTTP----LKAL 74 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE---ER 180 + + + L + + + + +T + + Sbjct: 75 SNQKFRDFQEKFGRTPTDGDEDSPLLFAEVGLITGDVVINPSALIVVMTTEIFRNMLYKT 134 Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDI-----INKSILGFFTELNPNRFWIMTSNTRRLNG 235 P VG + + DE D +SI+ + N L Sbjct: 135 PIGQVGTSLENVETLVLDECHYISDRGRGTVWEESIIYCPPSIQLVALSATIGNPGELTD 194 Query: 236 WFYDIFNIPLEDWKRYQIDTR 256 W + +P + Sbjct: 195 WINWVRQLPQPGDNQQTSSCE 215 >gi|15644543|ref|NP_229596.1| hypothetical protein TM1799 [Thermotoga maritima MSB8] gi|4982379|gb|AAD36862.1|AE001817_9 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 730 Score = 43.4 bits (100), Expect = 0.059, Method: Composition-based stats. Identities = 23/186 (12%), Positives = 51/186 (27%), Gaps = 8/186 (4%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 + Q++ + + + P K +I+A GIGKT A ++ + Sbjct: 229 RKNQIDSLRW---KFQEEILSFKPERGKIYSITAPTGIGKT--IANLLFASHLADEDTIV 283 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHW-FEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I ++ T+ + + P F + + E L ++ Sbjct: 284 IYALPFINIIEQTVDKIKEIFETESPFFVLPFHHLANPAYEEPDKYEDLLMNLWHSRVVV 343 Query: 170 TITCRTYSEERPDTFVGP-HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 T + + + DE P + L+ ++ S Sbjct: 344 TTFVSLLESLITFRKIPFFYKFPKAVLILDEVQAIPHEYWTPVEKTVEFLSKMGTTVLLS 403 Query: 229 NTRRLN 234 + Sbjct: 404 TATKPA 409 >gi|15965769|ref|NP_386122.1| DNA packaging protein GP2 [Sinorhizobium meliloti 1021] gi|15075038|emb|CAC46595.1| DNA packaging protein GP2 [Sinorhizobium meliloti 1021] Length = 477 Score = 43.4 bits (100), Expect = 0.059, Method: Composition-based stats. Identities = 36/262 (13%), Positives = 61/262 (23%), Gaps = 29/262 (11%) Query: 83 SAGRGIGKTTLNAWMML---------WLISTRPGMSIICIA--NSETQLKNTLWAEVSKW 131 AG +GKT A W R I+ +A S ++ + + Sbjct: 63 MAGNQLGKTLAGAAEAAMHLTGRYPDWWQGRRFDRPIVMLAGSESYELTRDGVQRLL--- 119 Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191 + + + L S +DS S + Sbjct: 120 IGPPLNEEEWGTGFLPKAAIKATTRRAGASGALDSVTVRHVSGRASTLLFKAYEQGRAKW 179 Query: 192 ----GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLE 246 V+ DE P+ + G +T R + Sbjct: 180 QANTVDYVWFDEEP--PEDVY--FEGITRTNATRGAIAVTFTPLRGLSAVVARYLMEKSP 235 Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306 D + E + +I Y AR P P EE++ Sbjct: 236 DRAVITMTIEDAEHYTPQERQRVIDSYPAHEREARTRG---VPALGSGRIFP--VTEESI 290 Query: 307 SREA-IDDLYAPLIMGCDIAGE 327 + + I G D + Sbjct: 291 RIDPFEIPKHWVQIGGLDFGWD 312 >gi|159027769|emb|CAO89639.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 966 Score = 43.4 bits (100), Expect = 0.060, Method: Composition-based stats. Identities = 27/242 (11%), Positives = 55/242 (22%), Gaps = 28/242 (11%) Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 + + + A G GKT L ++ R G + LK Sbjct: 12 DDFQHSAIAALAAGKSVVVCAPTGSGKT-LIGEYAIYRALER-GKRVFYTTP----LKAL 65 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE---ER 180 + + + L + + + + +T + + Sbjct: 66 SNQKFRDFQEKFGRTPTDGDEDSPLLFAEVGLITGDVVINPSALIVVMTTEIFRNMLYQT 125 Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDI-----INKSILGFFTELNPNRFWIMTSNTRRLNG 235 P VG + + DE D +SI+ + N L Sbjct: 126 PIGEVGTSLENVETLVLDECHYISDRGRGTVWEESIIYCPPSIQLVALSATIGNPGELTD 185 Query: 236 W--FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293 W + P ++ + + + G FP + Sbjct: 186 WINWVRQLRQPSDNKQTSSCELINSDFRPVPL------------RFYFANKEGLFPLLDP 233 Query: 294 NN 295 Sbjct: 234 KQ 235 >gi|330813838|ref|YP_004358077.1| cold-shock DEAD-box protein A [Candidatus Pelagibacter sp. IMCC9063] gi|327486933|gb|AEA81338.1| cold-shock DEAD-box protein A [Candidatus Pelagibacter sp. IMCC9063] Length = 558 Score = 43.4 bits (100), Expect = 0.060, Method: Composition-based stats. Identities = 21/165 (12%), Positives = 46/165 (27%), Gaps = 21/165 (12%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 F P Q++ + + SA G GKT M+ +I+T+ Sbjct: 20 MKFDTPTPIQIKSIPIILEQKD------------ILASAQTGTGKTAAFCIPMIEMIATK 67 Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 I + + E++K ++ + + F+ + + +Q + Sbjct: 68 KINRAIILVPT---------RELAKQVNDVIEKLLFQQSVIKSVCLVGGEPMNKQLRRLK 118 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS 210 +K + + DE D+ Sbjct: 119 TKPQIVVGTPGRVNDHLKRKSLLLNKVDLLILDEMDRMLDMGFSI 163 >gi|315123049|ref|YP_004065055.1| helicase [Pseudoalteromonas sp. SM9913] gi|315016809|gb|ADT70146.1| helicase [Pseudoalteromonas sp. SM9913] Length = 1050 Score = 43.4 bits (100), Expect = 0.060, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 74/237 (31%), Gaps = 30/237 (12%) Query: 1 MPRLISTDQ--KLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEF 58 + + ST + + AEC N + G P QL Sbjct: 268 IAKTKSTFETYWQSPDFELFTGKAECKEKLINSLNEQRGIGQASSQFYFDITPKTHQLAI 327 Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 +E + V S FK + A G GKT ++A+ + P + +A+ E Sbjct: 328 LEKLS------VERSVHNRFKNLVVAATGTGKTIISAFDFKTVYDKNPNAHFLFVAHREE 381 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 LK S + +L + + E+ + P + + Sbjct: 382 ILKQA----QSAYRGVLKNNDFGELWVGNYKPQHY--------------NQLFASIQTLN 423 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 + ++ H + + DE ++IL FT P +T+ R +G Sbjct: 424 SQIESLNLTH-DYYDYIVIDEVHHVSAASYRAILNHFT---PTILIGLTATPERQDG 476 >gi|218676343|ref|YP_002395162.1| Superfamily II DNA and RNA helicase [Vibrio splendidus LGP32] gi|218324611|emb|CAV26155.1| Superfamily II DNA and RNA helicase [Vibrio splendidus LGP32] Length = 428 Score = 43.4 bits (100), Expect = 0.060, Method: Composition-based stats. Identities = 23/272 (8%), Positives = 70/272 (25%), Gaps = 38/272 (13%) Query: 87 GIGKTTLNAWMMLWLIST------RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 G GKT + ++ + R + +A + + + Sbjct: 48 GTGKTAAFSLPVIQHLLNSGKKASRGTARGLILAPTRELAAQIAQNI----------KDY 97 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + LS+ ++ Q ++ + E + + DEA Sbjct: 98 VKYTELSVSAVYGGNKMSSQVRQLELGVDILVATPGRLEEHLEAGNVSIANLEFLVFDEA 157 Query: 201 SGT-PDIINKSILGFFTE-LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 ++ + + + ++ T + + ++ Sbjct: 158 DRILDMGFINAVRKIMLDVETSPQIMMFSATTSTQLNQLSVDILRKPKRISVERENSTAA 217 Query: 259 EG------IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI------------PHN 300 +D ++S + ++ + + + + + Sbjct: 218 TVGHVVYPVDQERKTELLSELIGRKNWRQVLVFVNYKETANDVVKELKLDGIKAVLCHGD 277 Query: 301 YIEEAMSR--EAIDDLYAPLIMGCDIAGEGGD 330 + A R + + A +++ D+A G D Sbjct: 278 KAQSARRRALDDFKEGRARVMVATDVAARGLD 309 >gi|159122282|gb|EDP47404.1| DEAD/DEAH box helicase, putative [Aspergillus fumigatus A1163] Length = 2043 Score = 43.4 bits (100), Expect = 0.061, Method: Composition-based stats. Identities = 14/123 (11%), Positives = 33/123 (26%), Gaps = 10/123 (8%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + G GKT M W +PG ++ IA + ++ + + + + + Sbjct: 1200 NVLLGSPTGSGKTVACELAMWWAFREKPGSKVVYIAPMKALVRERVMDWGKRLAAPMGLK 1259 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 E+ + + + + + V D Sbjct: 1260 -LVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRDYV---------RKVSLVIID 1309 Query: 199 EAS 201 E Sbjct: 1310 EIH 1312 >gi|37524175|ref|NP_927519.1| hypothetical protein plu0153 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783598|emb|CAE12448.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 619 Score = 43.4 bits (100), Expect = 0.061, Method: Composition-based stats. Identities = 22/177 (12%), Positives = 47/177 (26%), Gaps = 9/177 (5%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 ++ + + P + + G GK+ L + ++ I Sbjct: 21 QIEAYIKIREYFNQPDNKEALVVLPTGTGKSGLISIA----PYGVSNKRVLIITPGLVT- 75 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 K+++ S + Y + + S S +R Sbjct: 76 KDSIRKTQEVLEDNFWVNCDVIFNSKDIPVVNEYLQDISDEHLFASHIVYSNIHRVSSKR 135 Query: 181 PDTF-VGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236 + + DEA P + +LG+F E + +T R + Sbjct: 136 ETSLISRVPQDFFDFIIIDEAHHAPAQSWREVLGYFREA---KILHVTGTPYRGDNQ 189 >gi|70981929|ref|XP_746493.1| DEAD/DEAH box helicase [Aspergillus fumigatus Af293] gi|66844116|gb|EAL84455.1| DEAD/DEAH box helicase, putative [Aspergillus fumigatus Af293] Length = 2043 Score = 43.4 bits (100), Expect = 0.061, Method: Composition-based stats. Identities = 14/123 (11%), Positives = 33/123 (26%), Gaps = 10/123 (8%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + G GKT M W +PG ++ IA + ++ + + + + + Sbjct: 1200 NVLLGSPTGSGKTVACELAMWWAFREKPGSKVVYIAPMKALVRERVMDWGKRLAAPMGLK 1259 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 E+ + + + + + V D Sbjct: 1260 -LVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRDYV---------RKVSLVIID 1309 Query: 199 EAS 201 E Sbjct: 1310 EIH 1312 >gi|331085291|ref|ZP_08334377.1| hypothetical protein HMPREF0987_00680 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408074|gb|EGG87564.1| hypothetical protein HMPREF0987_00680 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 1105 Score = 43.4 bits (100), Expect = 0.061, Method: Composition-based stats. Identities = 26/200 (13%), Positives = 56/200 (28%), Gaps = 23/200 (11%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 +Q E ++ ++ + ++ + G GKT + + + R G ++ Sbjct: 27 PYQEEAIKNLEK------LDKVYDTYRTLVVVPTGGGKTRIAVEYLNRNVLNRQGTKVLW 80 Query: 113 IANSETQL------------KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 I + L +++L + + H F Q S ++ Sbjct: 81 ICERLSLLTQAHHSFVDHTYRDSLEHGGKPFKASEITAHVFSSQDTSFREEYKSEDVQMV 140 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGP----HNTHGMAVFNDEA-SGTPDIINKSILGFF 215 + + S ++ + NT + V DEA D I Sbjct: 141 FVTKQTLCKMFGFADNSGKQKEIDESFKDWLENTDELTVIIDEAHHAVGDDYRSIIHALL 200 Query: 216 TELNPNRFWIMTSNTRRLNG 235 I + T + Sbjct: 201 YMAQAKIHIIGLTATPKNTN 220 >gi|294634584|ref|ZP_06713119.1| terminase, ATPase subunit [Edwardsiella tarda ATCC 23685] gi|291092098|gb|EFE24659.1| terminase, ATPase subunit [Edwardsiella tarda ATCC 23685] Length = 588 Score = 43.4 bits (100), Expect = 0.061, Method: Composition-based stats. Identities = 39/366 (10%), Positives = 84/366 (22%), Gaps = 88/366 (24%) Query: 34 RFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93 F I+ F Q +QL++ A H + I R IG T Sbjct: 128 FFSDEAIEKLEEVFFDQSFEYQLQWYRAGLAHRIRD------------ILKSRQIGATFY 175 Query: 94 NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153 + L G + I ++ S+TQ ++ E + L Sbjct: 176 FSREALLRALKT-GHNQIFLSASKTQAY--VFREYIIQFARLVDVDL------------- 219 Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSI 211 +G + + + ++ DE P + K Sbjct: 220 --TGDPIVIGNNGAKLIFLGTNSNTAQSHNGD---------LYVDEIFWIPNFQKLRKVA 268 Query: 212 LGFFTELNPNRFWIMTSN-------TRRLNGWFYDIFNIPLEDWKRYQID--------TR 256 G ++ + + T + F + + Sbjct: 269 SGMASQKHLRSTYFSTPSTLAHGAYPFWSGDLFNKGRASAADRIEIDISHSALAGGLLCA 328 Query: 257 TVEGIDSGFHEGIIS-----------RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA 305 + E ++ + +D + + +F + + P ++ Sbjct: 329 DGQWRQIVTIEDALAGGCTLFDLDQLKRENSADDFKNLFMCEFVD-DKASVFPFEELQRC 387 Query: 306 M------SREAIDDLYAP----LIMGCDIAGEGGDKTVVVFRRGN--------IIEHIFD 347 M + P + +G D + G + + Sbjct: 388 MVDALEAWTDVNPYADHPFDRPVWIGYDPSHTGD--SAGCVVLAPPAVPGGKFRMLERHQ 445 Query: 348 WSAKLI 353 W Sbjct: 446 WKGMDF 451 >gi|198451661|ref|XP_002137335.1| GA27149 [Drosophila pseudoobscura pseudoobscura] gi|198131589|gb|EDY67893.1| GA27149 [Drosophila pseudoobscura pseudoobscura] Length = 1366 Score = 43.4 bits (100), Expect = 0.062, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 42/157 (26%), Gaps = 8/157 (5%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + G+GKT + A +M P II +A + + +++ ++P Sbjct: 76 NTLVVLPTGLGKTFIAAVVMYNFYRWYPQGKIIFMAPTRPLVAQ----QIAACQKIMPFP 131 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 +Q A+L + + D + D Sbjct: 132 GSDTVQLTGQLARPKRAQLWASKRVFFATPQVVHS---DMLETDDGAYFPFGAIKLLVVD 188 Query: 199 EAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 EA + NPN + S T Sbjct: 189 EAHRAKGRYAFTQVADSMMAQNPNFRMLALSATPGRT 225 >gi|163800373|ref|ZP_02194274.1| hypothetical protein 1103602000595_AND4_06819 [Vibrio sp. AND4] gi|159175816|gb|EDP60610.1| hypothetical protein AND4_06819 [Vibrio sp. AND4] Length = 430 Score = 43.4 bits (100), Expect = 0.062, Method: Composition-based stats. Identities = 31/303 (10%), Positives = 79/303 (26%), Gaps = 38/303 (12%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST------RPGMS 109 E F +A G GKT + M+ + R Sbjct: 17 AECGYEKLTPIQQKAIPMARKGFDIFATAQTGTGKTAAFSLPMIQQLLESSRSVSRKTAR 76 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 + +A + E+++ ++ + + + LS+ ++ Q ++S Sbjct: 77 ALVMAPT---------RELAEQIADNI-KAYTKYTDLSVAAIFGGRKMSSQISALESGVD 126 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--KSILGFFTELNPNRFWIMT 227 + E + + DEA D+ + + + Sbjct: 127 ILVATPGRLEEHIEQGNVSVANIDFLVFDEADRILDMGFIHAVRKIMLDVDTNPQIMMFS 186 Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG------IDSGFHEGIISRYGLDSDVAR 281 + T + + + +T +D ++S + + Sbjct: 187 ATTSSQLNLLAKDILHKPKRIEVERANTTAQTIAHVLYPVDQERKTELLSELIGRKNWRQ 246 Query: 282 IEILGQFPQQEVNNFIPHNY------------IEEAMSREAID--DLYAPLIMGCDIAGE 327 + + + + + + A R + A +++ D+A Sbjct: 247 VLVFVNYKETANDVVKELKLDGIKAVVCHGDRAQSARRRALEEFKTGKARVMVATDVAAR 306 Query: 328 GGD 330 G D Sbjct: 307 GLD 309 >gi|148977043|ref|ZP_01813689.1| DNA and RNA helicase [Vibrionales bacterium SWAT-3] gi|145963703|gb|EDK28964.1| DNA and RNA helicase [Vibrionales bacterium SWAT-3] Length = 428 Score = 43.4 bits (100), Expect = 0.062, Method: Composition-based stats. Identities = 25/272 (9%), Positives = 71/272 (26%), Gaps = 38/272 (13%) Query: 87 GIGKTTLNAWMMLWLIST------RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 G GKT + ++ + R + +A + + + Sbjct: 48 GTGKTAAFSLPVIQHLLNSGKKASRGTARGLILAPTRELAAQIAQNI----------KDY 97 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + LS+ ++ Q ++ + E + + DEA Sbjct: 98 VKYTELSVSAVYGGNKMSSQVRQLELGVDILVATPGRLEEHLEAGNVSIANLEFLVFDEA 157 Query: 201 SGT-PDIINKSILGFFTE-LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 ++ + + + ++ T + + ++ Sbjct: 158 DRILDMGFINAVRKIMLDVETSPQIMMFSATTSTQLNQLSVDILRKPKRISVERENSTAA 217 Query: 259 EGIDSGFHEGIISRYGLDSDV-----ARIEILGQFPQQEVNNFI-------------PHN 300 + + L S++ R ++ ++ N + + Sbjct: 218 TVGHVVYPVDQERKTELLSELIGRKNWRQVLVFVNYKETANEVVKELKLDGIKAVLCHGD 277 Query: 301 YIEEAMSR--EAIDDLYAPLIMGCDIAGEGGD 330 + A R + + A +++ D+A G D Sbjct: 278 KAQSARRRALDDFKEGKARVMVATDVAARGLD 309 >gi|332026566|gb|EGI66684.1| Putative ATP-dependent RNA helicase DDX20 [Acromyrmex echinatior] Length = 1250 Score = 43.4 bits (100), Expect = 0.062, Method: Composition-based stats. Identities = 28/195 (14%), Positives = 54/195 (27%), Gaps = 23/195 (11%) Query: 42 GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101 G F +P QL+ + F + A G GKT + + L + Sbjct: 10 GLMSAGFQKPSPIQLKAI------------PLGRYGFDLIVRAKSGTGKTIVFGVIALDI 57 Query: 102 ISTRPGM-SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 + G ++ IA + + V K + E + +E+ Sbjct: 58 LDILVGSPQVLIIAPTREIAIQITY--VIKTIGSKIEGLRVEYFVGGI--------SIEE 107 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220 SK + + + DEA +I + + + P Sbjct: 108 DKKKLSKCHIAVGAPGRVKHLIEKGFLQVSKIKLFVLDEADKLMEINFQKDINYIFSKLP 167 Query: 221 NRFWIMTSNTRRLNG 235 + I+ S+ Sbjct: 168 SSKQIIASSATYPGD 182 >gi|163736715|ref|ZP_02144134.1| phage terminase GpA [Phaeobacter gallaeciensis BS107] gi|161390585|gb|EDQ14935.1| phage terminase GpA [Phaeobacter gallaeciensis BS107] Length = 649 Score = 43.4 bits (100), Expect = 0.062, Method: Composition-based stats. Identities = 24/208 (11%), Positives = 51/208 (24%), Gaps = 28/208 (13%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 +Q E ++ NP + ++ G +GKT + I P ++ Sbjct: 58 PYQREVIDMTA----------NPRCNRISLMWGAQVGKTQTALAAQAFRIGFNPVSQMMM 107 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 +Q T W E + + E+ + + Q M + + Sbjct: 108 ---QPSQGDLTTWLETKFNPLIEGNEDLAEVIAKPR----ARHGVNNQRMKSYPGGFLMF 160 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD----IINKSILGFFTELNPNRFWIMTS 228 + + + DE G + R + S Sbjct: 161 SWS------GSPKTMRGRSAPFIICDETDGYDRTSEGHPVSLLWQRAATFGDQRLLLEIS 214 Query: 229 NTR-RLNGWFYDIFNIPLEDWKRYQIDT 255 + W F + + + Sbjct: 215 TPTIKGGSWIEKAFEQGDQRYFYVRCPH 242 >gi|323176703|gb|EFZ62293.1| large subunit terminase [Escherichia coli 1180] gi|326339725|gb|EGD63536.1| Phage protein [Escherichia coli O157:H7 str. 1125] gi|326345520|gb|EGD69260.1| Phage protein [Escherichia coli O157:H7 str. 1044] Length = 504 Score = 43.4 bits (100), Expect = 0.063, Method: Composition-based stats. Identities = 20/211 (9%), Positives = 45/211 (21%), Gaps = 23/211 (10%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 I R +G +T +L P + +A + +++ LP Sbjct: 6 IILKARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQAASEIFRTKIAVPFDHLPDWLR 65 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + + ++ + Sbjct: 66 ASFTIVERRSGASG-----GYILFGHGSSIQVATSFRSGTVQRLHISEHGKI-------C 113 Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-----------DWK 249 + P + G ++ S + G FY++ N E D+K Sbjct: 114 AKYPAKAKELRTGTLNAVSDECIIFDESTAEGVGGDFYEMSNRAQEITASGLLLTAQDYK 173 Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280 + + E + Sbjct: 174 FHFYAWWQDPKYSARVPESGLKLSREKMTYF 204 >gi|197935894|ref|YP_002213730.1| TerL large terminase subunit-like protein [Ralstonia phage RSB1] gi|197927057|dbj|BAG70399.1| TerL large terminase subunit-like protein [Ralstonia phage RSB1] Length = 605 Score = 43.4 bits (100), Expect = 0.063, Method: Composition-based stats. Identities = 18/142 (12%), Positives = 39/142 (27%), Gaps = 15/142 (10%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 E + + I A RG KTT+ A +W + P ++ ++ Sbjct: 44 EIQVDIAEFLEYGPHY-------LMIQAQRGQAKTTITAAYAVWSLIHNPRNRVVIVSAG 96 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 TQ + + + + + S + + S+ K ++ C Sbjct: 97 GTQANEIS-TLIVRIIMTMDELACLRPDRNAGDRSSVESFDVHHSLKGLDKSPSVACFGI 155 Query: 177 SEERPDTFVGPHNTHGMAVFND 198 + + D Sbjct: 156 TA-------NMQGKRADLLIAD 170 >gi|53804812|ref|YP_113512.1| DNA-dependent helicase II [Methylococcus capsulatus str. Bath] gi|53758573|gb|AAU92864.1| DNA helicase II [Methylococcus capsulatus str. Bath] Length = 726 Score = 43.4 bits (100), Expect = 0.063, Method: Composition-based stats. Identities = 33/298 (11%), Positives = 76/298 (25%), Gaps = 30/298 (10%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICI 113 ++ + + + + AG G GKT + + WL+ +I+ + Sbjct: 1 MDITDIIAPLNEAQREAVTAPDRSLLVLAGAGSGKTRVLIHRIAWLLRAEGVSPHAILAV 60 Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173 + ++ + L ++ + Sbjct: 61 TFTNKAANEM----------KARLEALLDLSTRDLWVGTFHGLAHRLLRRHAADAGLHEG 110 Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233 + D + DEA P + + + N Sbjct: 111 --FQILDSDDQYRLIRRLLKTLELDEAR-WPPRQIQWYINAQKDQGRRAR-----NLPDS 162 Query: 234 NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293 F + Y+ + +D + D+ +F V Sbjct: 163 YDPFERQM---RRIYLAYEELCQRSGLVDFAELLLRTHEFLRDNADVLAHYQERFQHVLV 219 Query: 294 NNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 + F N ++ A R D ++G D D++ + RG +E++ + Sbjct: 220 DEFQDTNDVQYAWLRLLTQDRDNLSVVGDD------DQS-IYGWRGAKVENLHRFRRD 270 >gi|15611679|ref|NP_223330.1| hypothetical protein jhp0612 [Helicobacter pylori J99] gi|4155165|gb|AAD06193.1| putative [Helicobacter pylori J99] Length = 450 Score = 43.4 bits (100), Expect = 0.063, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 54/198 (27%), Gaps = 35/198 (17%) Query: 29 KNFVMRFFPWGIKG-------KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81 ++F+ W PL +P Q E +E + N Sbjct: 145 EDFIYSRIDWEKFDPTKTEDEIPLCDKKRPRPHQTEAIEKTKEYFSDPKNARGK-----L 199 Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN----------------TLW 125 I A G GKT + L ++ + + +A S L + Sbjct: 200 IMAC-GTGKTYTS----LKIMESLDPKITLFLAPSIALLSQTFREYAQEKSEPFYASIVC 254 Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI--DSKHYTITCRTYSEERPDT 183 ++ S + L + PS ++L ++K + I S R Sbjct: 255 SDDKTGQSKNEDNDDIKFSELPIKPSTRLEDILSTYEKAQKENKRFIIFSTYQSALRIKE 314 Query: 184 FVGPHNTHGMAVFNDEAS 201 + DEA Sbjct: 315 AQEAGLNGIDLIICDEAH 332 >gi|85711466|ref|ZP_01042524.1| putative ATP-dependent helicase [Idiomarina baltica OS145] gi|85694618|gb|EAQ32558.1| putative ATP-dependent helicase [Idiomarina baltica OS145] Length = 1047 Score = 43.4 bits (100), Expect = 0.063, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 48/198 (24%), Gaps = 30/198 (15%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P +Q ++ + + +SA G GKT + A I Sbjct: 325 PKPFQQIILDQLQN------ERDHGRYKNLLVSA-TGTGKTVMAAL---------DYRRI 368 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + +L E S+ RH + S + Sbjct: 369 CSQEGGQPRLLFVAHREQILQQSLQVFRHVLRDSN----------FGELLSGNHQPDSDS 418 Query: 171 ITCRTYSEERPDTFVGPHNTH-GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 T + H+ + V DE + I T P +T+ Sbjct: 419 HLFATIQTLNSRDYTTRHDENYWNMVIIDECHHIEAASFQRITEALT---PKYLLGLTAT 475 Query: 230 TRRLNGWFYDIFNIPLED 247 R +G P D Sbjct: 476 PERADGLNIMRHFDPRPD 493 >gi|224582696|ref|YP_002636494.1| hypothetical protein SPC_0883 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224467223|gb|ACN45053.1| putative phage protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 591 Score = 43.4 bits (100), Expect = 0.063, Method: Composition-based stats. Identities = 41/351 (11%), Positives = 78/351 (22%), Gaps = 76/351 (21%) Query: 38 WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97 + W E + H N+ I R IG T A+ Sbjct: 126 YKKNDISSLTQEDFDAWADEHLFEYQKHLRRNIGQLVRN-----ILKSRQIGATWYFAFE 180 Query: 98 MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 I A+ + AE + + +F + Sbjct: 181 AFENAVMTGDPQIFLSASK-------VQAEYFRSYIVNIAEQYFGITLTGNPIRLSNGAE 233 Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFF 215 L + T ++YS ++ DE P+ +N+ Sbjct: 234 LRFLSTNKN-----TAQSYSGH---------------LYCDEYFWVPNFTKLNEVASAMA 273 Query: 216 TELNPNRFWIMTSNTRRLNG-----WFYDIFNIPLEDWKRYQIDTRT--------VEGID 262 T S W D + + + T Sbjct: 274 THDKWRT--TYFSTPSAKTHQAYPFWTGDEWKRGSKKRTAIKFPTFDELRDGGRVCPDGQ 331 Query: 263 SGFHEGIISRYGLDSDVARIE--------------ILGQFPQQEVNNFIPHNYIEEA--- 305 + + ++A IE + F ++ + +E Sbjct: 332 WRYVITMEDAIAGGFNLANIEKLRNRYNTATFNMLYMCVFVD-SKDSVFSFSDLEACGVE 390 Query: 306 --MSREAIDDLYAPL----IMG-CDIAGEGGDKTVVVFRRGNIIEHIFDWS 349 ++ D P + G D A G D + V + + + Sbjct: 391 VDTWQDHNPDAARPFGDRPVWGGFDPARSG-DLSCFVIV-APPMFAVEKFR 439 >gi|189466065|ref|ZP_03014850.1| hypothetical protein BACINT_02435 [Bacteroides intestinalis DSM 17393] gi|189434329|gb|EDV03314.1| hypothetical protein BACINT_02435 [Bacteroides intestinalis DSM 17393] Length = 784 Score = 43.4 bits (100), Expect = 0.063, Method: Composition-based stats. Identities = 33/267 (12%), Positives = 77/267 (28%), Gaps = 25/267 (9%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRP-GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 + AG G GKT + + + +L+ +I+ + + + + +++ + RH Sbjct: 26 VIAGAGSGKTRVLTYKIAYLLENGYQPWNILALTFTNKAARE-MKERIARQVGDQRARHL 84 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + S+ + E + ++ + + DE Sbjct: 85 WMGTFHSIFLRILHVEAV----------NIGFTSQFTIYDTADSKSLMRSIIKEMGLDEK 134 Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRL--NGWFYDIFNIPLEDWKRYQIDTRTV 258 P + + + + + G + + RY R Sbjct: 135 VYKPGN----VQARISNAKNHLVSPAAYASNKEAYEGDCAAKMPAIRDIYHRYWDRCRQA 190 Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318 + +D D QF V+ + NY + ++ + D Sbjct: 191 DAMDFDDLLFYTFILFRDHPEVLARYQEQFRYILVDEYQDTNYAQHSIVLQLAKDHQQVC 250 Query: 319 IMGCDIAGEGGDKTVVVFRRGNIIEHI 345 ++ G D + RG I++I Sbjct: 251 VV-------GDDAQSIYSFRGADIDNI 270 >gi|309778104|ref|ZP_07673041.1| ATP-dependent RNA helicase [Erysipelotrichaceae bacterium 3_1_53] gi|308914110|gb|EFP59913.1| ATP-dependent RNA helicase [Erysipelotrichaceae bacterium 3_1_53] Length = 789 Score = 43.4 bits (100), Expect = 0.064, Method: Composition-based stats. Identities = 23/159 (14%), Positives = 42/159 (26%), Gaps = 5/159 (3%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 E + C I++ + G GKT + L II +A Sbjct: 248 ELRTDISNQCKE-FGCQPSGIYRLS--CPTGSGKTLASLRYALQHAQVYRKKHIIYVAPY 304 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 +T L+ + + H + +Y+ + + + + T Sbjct: 305 KTILEQNAEVMKQFFSEDIVLEHHSNIIPSEYTDYDYYSSSWNKPVILTTAVRFFD--TL 362 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 ++R H V DEA P Sbjct: 363 FKDRTTDVRRFHQLADSIVILDEAQKIPVKTVSMFNEMM 401 >gi|195380381|ref|XP_002048949.1| GJ21324 [Drosophila virilis] gi|194143746|gb|EDW60142.1| GJ21324 [Drosophila virilis] Length = 1366 Score = 43.4 bits (100), Expect = 0.064, Method: Composition-based stats. Identities = 21/158 (13%), Positives = 43/158 (27%), Gaps = 8/158 (5%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + G+GKT + + +M L P +I +A + + +++ ++P Sbjct: 73 RNTLVVLPTGLGKTFIASVVMYNLYRWYPKSKLIFMAPTRPLVSQ----QIAACQKIMPF 128 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 ++ P AEL + + + + Sbjct: 129 PAEDTVELTGRLPRAKRAELWLSKRVFFATPQVVQS---DMLDTGDGMQFPYMSIKLLVV 185 Query: 198 DEAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 DEA + NP + S T Sbjct: 186 DEAHRAKGRYAYTQVTESIMARNPYFRMLALSATPGRT 223 >gi|317009317|gb|ADU79897.1| type II R-M system protein [Helicobacter pylori India7] Length = 491 Score = 43.4 bits (100), Expect = 0.064, Method: Composition-based stats. Identities = 26/201 (12%), Positives = 51/201 (25%), Gaps = 39/201 (19%) Query: 29 KNFVMRFFPWGIKGK-----PLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS 83 ++F+ W PL +P Q E + A + N I Sbjct: 144 EDFIYSQIDWEKLDTTQSELPLCDKKKPRPHQTEAINATKEYFSDPKNTRGK-----LIM 198 Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK-----WLSMLPHR 138 A G GKT + L ++ + + S L + E ++ + + + Sbjct: 199 AC-GTGKTYTS----LKIMEALDPKITLFLVPSIALLSQ-TFREYAQEKSEPFYASIVCS 252 Query: 139 HWFEMQSLSLHPSGWYAELLEQSM------------------GIDSKHYTITCRTYSEER 180 + ++ + ++K + I S R Sbjct: 253 DDKVGKGKKNKNDDGIDDINFSELPLKPSTRLEDILSVYEKAKKENKRFIIFSTYQSALR 312 Query: 181 PDTFVGPHNTHGMAVFNDEAS 201 + DEA Sbjct: 313 IQEAQRMGLNGIDLIICDEAH 333 >gi|261365839|ref|ZP_05978722.1| CRISPR-associated helicase Cas3 domain protein [Neisseria mucosa ATCC 25996] gi|288565598|gb|EFC87158.1| CRISPR-associated helicase Cas3 domain protein [Neisseria mucosa ATCC 25996] Length = 760 Score = 43.0 bits (99), Expect = 0.065, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 47/175 (26%), Gaps = 14/175 (8%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 G GKT + L +I + + ++ AE K L + E Sbjct: 266 PTGGGKTFTSMAFALEHAKRHDMRRVIYVIPFTSIIEQNA-AEFRKAFGELGEQAVLEHH 324 Query: 145 SLSLHPS-GWYAELLEQSMGIDSKHYTITCRTYS-------EERPDTFVGPHNTHGMAVF 196 S + + ++ I T +R HN G + Sbjct: 325 STFDDGKLQNETTKDKLRLASENWDAPIVVTTAVQFFESLFADRSSRCRKLHNIAGSVII 384 Query: 197 NDEASGTPDI----INKSILGFFTELNPNRFWIMTSNTR-RLNGWFYDIFNIPLE 246 DEA P I ++I + + + + FY F E Sbjct: 385 LDEAQMLPLNLLLSIMQAIKELAQNYHCSVVMCTATQPAVQAENGFYRGFENVRE 439 >gi|331250704|ref|XP_003337958.1| helicase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309316948|gb|EFP93539.1| helicase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1411 Score = 43.0 bits (99), Expect = 0.065, Method: Composition-based stats. Identities = 21/162 (12%), Positives = 44/162 (27%), Gaps = 27/162 (16%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS- 109 P +Q E +E I A G GKT + ++ W + Sbjct: 21 PRLYQTELLEE-------------AKKRNIIIRADTGTGKTIVAVNLIAWTAVKTKAKNK 67 Query: 110 ----IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 + + + K ++ + ++Q + W++EL E + Sbjct: 68 NHQIQAFLVPTRPLAHQQA-EYIQKHCTLRIKAYTGDLQPELWNIRKWHSELNEVDV--- 123 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207 T + + + + + DEA Sbjct: 124 ---LVSTAQIFYDLISKGYWKL--EDVSLLIFDEAHHCRKNH 160 >gi|295148218|ref|NP_001171151.1| Fanconi anemia, complementation group M [Xenopus laevis] gi|223929916|gb|ACN24616.1| Fanconi anemia protein [Xenopus laevis] Length = 2166 Score = 43.0 bits (99), Expect = 0.065, Method: Composition-based stats. Identities = 17/157 (10%), Positives = 40/157 (25%), Gaps = 12/157 (7%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + G+GKT + A +M P I+ +A ++ + ++ ++ Sbjct: 208 NTLVCLPTGLGKTFIAAVVMYNFYRWYPSGKIVFMAPTKPLVAQ----QIEACFRVMGIP 263 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + + + E + P + D Sbjct: 264 QGHMAEMTGSTQAQNRKNIWETHRVFFLTPQVMVNDLTRGACP-------ALEIKCLVID 316 Query: 199 EASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 EA + ++ T + S T + Sbjct: 317 EAHKALGNHAYCQVVRELTNYTNQFRILALSATPGGD 353 >gi|319891801|ref|YP_004148676.1| Phage terminase large subunit [Staphylococcus pseudintermedius HKU10-03] gi|317161497|gb|ADV05040.1| Phage terminase large subunit [Staphylococcus pseudintermedius HKU10-03] Length = 547 Score = 43.0 bits (99), Expect = 0.066, Method: Composition-based stats. Identities = 28/247 (11%), Positives = 74/247 (29%), Gaps = 34/247 (13%) Query: 3 RLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAV 62 +L+ + ++ +++ + + F KG+ + +Q ++ A+ Sbjct: 29 KLLDDMEHHDKYIYDESKAERPIAFIERFCRHS-----KGELAGKPLKLDLFQKAYISAL 83 Query: 63 DVHCHSNVN--NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSET 118 + + F GR GKTT+ + + L+++ G + +A+ Sbjct: 84 FGFVDKDTGYRRYTESFFFV----GRKNGKTTMLSAIALYMMIADGESGSEVYSVASKRD 139 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 Q N L+ + M+ ++A + + ++ Sbjct: 140 QA-NILF---DQAHEMIVQSPDLNKNIRKRKSDLYFAHNFSKMQSLAKNSNSLD------ 189 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 + V DE D + + + + ++T+ F Sbjct: 190 ----------GLNAHLVVIDELHSIQDRNLYEVMKQSQSARTQPLLIMITTAGTHRGTIF 239 Query: 238 YDIFNIP 244 D++ Sbjct: 240 DDLYEYA 246 >gi|156035735|ref|XP_001585979.1| hypothetical protein SS1G_13071 [Sclerotinia sclerotiorum 1980] gi|154698476|gb|EDN98214.1| hypothetical protein SS1G_13071 [Sclerotinia sclerotiorum 1980 UF-70] Length = 1974 Score = 43.0 bits (99), Expect = 0.066, Method: Composition-based stats. Identities = 15/123 (12%), Positives = 33/123 (26%), Gaps = 10/123 (8%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + G GKT M W +PG ++ IA + ++ + ++ + + Sbjct: 1163 NVLLGSPTGSGKTIACELAMWWAFREKPGSKVVYIAPMKALVRERVKDWGARLTKQMGLK 1222 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 E+ + + + + T V D Sbjct: 1223 -LVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWTTRGYV---------RQVSLVIID 1272 Query: 199 EAS 201 E Sbjct: 1273 EIH 1275 >gi|82751447|ref|YP_417188.1| phage-associated terminase large subunit [Staphylococcus aureus RF122] gi|215401206|ref|YP_002332511.1| putative terminase large subunit [Staphylococcus phage phiSauS-IPLA88] gi|82656978|emb|CAI81415.1| phage-associated terminase large subunit [Staphylococcus aureus RF122] gi|215260433|gb|ACJ64564.1| gp36 [Staphylococcus phage phiSauS-IPLA88] Length = 429 Score = 43.0 bits (99), Expect = 0.066, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 69/245 (28%), Gaps = 22/245 (8%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 N + ++ + RG K+ A ++ I +I+ + K + + ++ Sbjct: 20 HNKSFYRV-VKGSRGSKKSKTTAINFIYRIMKYDWANILVVRRFSNTNKQSTYTDLKWAT 78 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 + L H F+ + I R + T + Sbjct: 79 NQLGVAHLFKFNES------------LPEITYKPTGQKILFRGLDDPLKITSITVDTGIL 126 Query: 193 MAVFNDEASGTPD-----IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---NIP 244 + +EA + +SI G + + + +T N W F Sbjct: 127 CWAWFEEAYQIETFAKFSTVVESIRGSYDSPDFFKQITVTFNPWSERHWLKSTFFDEETK 186 Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE 304 L + R E +D E Y + ARI G + + + + Sbjct: 187 LNNTFSDTTTYRVNEWLDKVDIERYEDLYIKNPRRARIVCDGDW-GVAEGLVFDNFKVTD 245 Query: 305 AMSRE 309 RE Sbjct: 246 FDWRE 250 >gi|333029139|ref|ZP_08457202.1| putative helicase-like protein [Streptomyces sp. Tu6071] gi|332742347|gb|EGJ72789.1| putative helicase-like protein [Streptomyces sp. Tu6071] Length = 928 Score = 43.0 bits (99), Expect = 0.067, Method: Composition-based stats. Identities = 39/282 (13%), Positives = 74/282 (26%), Gaps = 34/282 (12%) Query: 52 HRWQLEFMEAVDVHCH--SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 + Q+E M + + + + + + + G GKT A L L P Sbjct: 19 RKHQVELMSDLRKWVRVAARESARSGRGARATVVSATGTGKTISAAVAALEL---FPSGR 75 Query: 110 IICIANSETQLKNT--LWAEVSKWLSM----------LPHRHWFEMQSLSLHPSGWYAEL 157 ++ + + L T W V M L + + + W + Sbjct: 76 VLVMVPTLDLLVQTAQSWRAVGHTAPMVGVCSLPGDLLLEELRVRTTTHPIRLALWAGQG 135 Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGP---HNTHGMAVFNDEA---SGTPDIINKSI 211 + S + E G DEA +G+ +I Sbjct: 136 PVVVLATYSSLVGGDGQGGPLEAALAGSGLYGQRMDGFDLAVVDEAHRTAGSAAKPWAAI 195 Query: 212 LGFFTELNPNRFWIMTS----NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267 +R ++ + R + + + EG + Sbjct: 196 HDNARIPAAHRLYLTATPRVLAPARPDR--DEDQEEGGGEAPALVTMANDPEGEYGAWIH 253 Query: 268 GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309 + S+ +IL F + P + E M RE Sbjct: 254 EL-----GLSEAIERKILAPFEIDVLEITDPEPELMEGMDRE 290 >gi|126000006|ref|YP_001039677.1| TerL large terminase subunit-like protein [Erwinia amylovora phage Era103] gi|121621862|gb|ABM63436.1| TerL large terminase subunit-like protein [Enterobacteria phage Era103] gi|311875245|emb|CBX44504.1| large terminase subunit protein [Erwinia phage phiEa1H] gi|311875366|emb|CBX45107.1| large terminase subunit protein [Erwinia phage phiEa100] Length = 624 Score = 43.0 bits (99), Expect = 0.067, Method: Composition-based stats. Identities = 31/250 (12%), Positives = 71/250 (28%), Gaps = 36/250 (14%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 R Q + + + ++ + A RG KTT+ A ++ I RP I+ Sbjct: 52 RIQADILRFMFT----------GKKYRM-VEAQRGQAKTTIAAIYAVFCIIHRPHFRILI 100 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 + + + + E++ W+ + F + + S+ HYT+ Sbjct: 101 SSQTSKRAE-----EIAGWVIKI-----FRGLDILEFMMPDIYSGDKASIRGFEIHYTLR 150 Query: 173 CRTYSEERP--DTFVGPHNTHGMAVFNDE-------ASGTPDIINKSILGFFTELNPNRF 223 S + D+ A+ + + F +N Sbjct: 151 GSGASPSVACYSIEGSMQGARADLIIADDVESLQNSATAAGRVKLEEATKEFESINQTGD 210 Query: 224 WIMTSNTRRLNGWFYD------IFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277 + + +N + + I + + + + E + + L Sbjct: 211 ILYLGTPQSINSIYNNLPSRGYQLRIWPGRYPTVEQQVSYGDFLAPLIIEDMEANPELRR 270 Query: 278 DVARIEILGQ 287 + GQ Sbjct: 271 GGGITRLQGQ 280 >gi|116008407|ref|NP_650971.2| CG7922 [Drosophila melanogaster] gi|113194811|gb|AAF55897.2| CG7922 [Drosophila melanogaster] Length = 1489 Score = 43.0 bits (99), Expect = 0.067, Method: Composition-based stats. Identities = 29/211 (13%), Positives = 53/211 (25%), Gaps = 11/211 (5%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + G+GKT + A +M P I+ +A + + + A ++P Sbjct: 73 NTLVVLPTGLGKTFIAAVVMYNFYRWYPKGKIVFMAPTRPLVSQQIHASQK----IMPFP 128 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 +Q P AEL + + D + D Sbjct: 129 SEDTVQLTGQLPRPKRAELWASKRVFFATPQVVHS---DMLEADGECSFPFGSIKLIVVD 185 Query: 199 EAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLN--GWFYDIFNIPLEDWKRYQIDT 255 EA + N + S T N+ + + + + Sbjct: 186 EAHRAKGRYAYTQVADCLMARNRYFRMLALSATPGRTMEDVAAVCRNLYISNLQVRWDTS 245 Query: 256 RTV-EGIDSGFHEGIISRYGLDSDVARIEIL 285 V I I+ R +L Sbjct: 246 IDVQPYIHRRTIRTIVVSLKERIKEPRERLL 276 >gi|331245260|ref|XP_003335267.1| nucleolus protein [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309314257|gb|EFP90848.1| nucleolus protein [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1092 Score = 43.0 bits (99), Expect = 0.068, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 48/150 (32%), Gaps = 15/150 (10%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + + +S ++A RG GK+ M + + +I + Sbjct: 271 QAKTLMEFTSSITEKTLSST-----VTLTASRGRGKSAAL-GMAIAVAVAHSYSNIFVTS 324 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 S LK L+ + K L+ L + + W ++ + + + + Sbjct: 325 PSPENLKT-LFEFIFKSLTALGYEEHLDYNVHQSSNPEWKNCIVRVDIFRNHR------Q 377 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 T +P + V DEA+ P Sbjct: 378 TIQYIQPQDYKVLG--QAELVVIDEAAAIP 405 >gi|164659175|ref|XP_001730712.1| hypothetical protein MGL_2166 [Malassezia globosa CBS 7966] gi|159104609|gb|EDP43498.1| hypothetical protein MGL_2166 [Malassezia globosa CBS 7966] Length = 838 Score = 43.0 bits (99), Expect = 0.068, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 54/181 (29%), Gaps = 14/181 (7%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G+GKT M+ L+ P + +A + L+ E+ K+ L W Q Sbjct: 244 GMGKT----IQMISLLVADPKRPSLVVAPTVAILQ--WRNEMQKYAPGLRVVVWHGAQRS 297 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTIT--CRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + +++ S + + T + H + DEA Sbjct: 298 RDRDTLSTVDVVLTSYAVLESTFRRDRYGVTRNGRHVREQSLLHAMKWRRIILDEAHHIK 357 Query: 205 DIINKSILGFFTELNPNRFWIMTSNT-RRLNGWFYDIFNIPLED----WKRYQIDTRTVE 259 + + + F + W ++ + G Y + D + Q ++ Sbjct: 358 ERTSNTARSAFALQSD-FKWCLSGTPLQNRVGELYTMVRFLGGDPFAFYYCRQCSCKSAS 416 Query: 260 G 260 Sbjct: 417 W 417 >gi|171741108|ref|ZP_02916915.1| hypothetical protein BIFDEN_00175 [Bifidobacterium dentium ATCC 27678] gi|171276722|gb|EDT44383.1| hypothetical protein BIFDEN_00175 [Bifidobacterium dentium ATCC 27678] Length = 482 Score = 43.0 bits (99), Expect = 0.069, Method: Composition-based stats. Identities = 35/307 (11%), Positives = 65/307 (21%), Gaps = 55/307 (17%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ + + + + R GK+TL P I Sbjct: 35 PWQRYVADVAGE---IDPATGTYYYDRVILGTPRQCGKSTLIDTEDTRNAQLGPDRKIYY 91 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 +A + + ++ L + +G + + Sbjct: 92 LAQTGKDAE----KHFKDYVQQLAKSRLAPIACRPRLSNGGM------EQRFINGSFIC- 140 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI------M 226 T V H T DEA D K IL R + Sbjct: 141 ------PLAVTKVAGHGTQMDKFTIDEAFSLDDETGKLILDGMAPTMNTRLHFTGVQPQI 194 Query: 227 TSNTRRLN--------------------GWFYDIFNIPLE-DWKRYQIDTRTVEGIDSGF 265 + + F IP + D + Q + + Sbjct: 195 WITSTEGTADSTFLNGLLDGLRAGDVPRRTCWFDFGIPADADPEDLQTILKWHPAAGLLW 254 Query: 266 HEGIISRYG---LDSDVARIEILGQFPQQE-VNNFIPHNYIEEAMSREAIDDL--YAPLI 319 + + + G + I + ++ D PL+ Sbjct: 255 GLDQLRDFRGQFEGNAAGWARAFGNRRDTGVADRVIDETLWQATVATPIGPDRLDGRPLV 314 Query: 320 --MGCDI 324 D+ Sbjct: 315 FAAAVDV 321 >gi|307200842|gb|EFN80895.1| DNA2-like helicase [Harpegnathos saltator] Length = 963 Score = 43.0 bits (99), Expect = 0.070, Method: Composition-based stats. Identities = 30/306 (9%), Positives = 79/306 (25%), Gaps = 35/306 (11%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 E M ++ V + + G GKT ++ + + +++ A++ Sbjct: 658 EMMRDLNEDQQRAVLRAVAAEEYVLVKGMPGTGKTQTLVVLV--ELLLKLDFTVLITAHT 715 Query: 117 ETQLKNTLWAEVSKWLSMLPHR-----HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + + N L + + + L H + + + M + K Sbjct: 716 HSAVDNVLLKLLDRNIDFLRLGATKQVHPLLTCKTEEYATKCCDTPEKLEMLYNDKRVVG 775 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 Y P DE++ + ++ +++ + Sbjct: 776 VT-CYGAYHP----LLRRRSFDVCVVDESTQVTQPT--VLRPLYSARR----FVLVGDPN 824 Query: 232 R--LNGWFYDIFNIPLEDWKRYQIDTRTVE-GIDSGFHEGIISRYGLDSDVARIEILGQF 288 + + ++ ++D+ + + + R +++ Sbjct: 825 QLPPVVKSRTAVKLGADESLFVRLDSENNTVNLTKQYRMNRRIMKLANDTAYRGKLMPSN 884 Query: 289 PQQEVNNFIPHNY-IEEAMSREAIDD---LYAPLIMGCDIAGEG----------GDKTVV 334 Q E I + + + +M D DK V+ Sbjct: 885 KQVENATLICAHAEVLSSCEAWVRRTLSRQLDDSVMVLDTGSTRDFNVNESYVIDDKNVI 944 Query: 335 VFRRGN 340 R G Sbjct: 945 RLRDGE 950 >gi|332027148|gb|EGI67241.1| Activating signal cointegrator 1 complex subunit 3 [Acromyrmex echinatior] Length = 2120 Score = 43.0 bits (99), Expect = 0.070, Method: Composition-based stats. Identities = 21/177 (11%), Positives = 46/177 (25%), Gaps = 25/177 (14%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L +FS + Q + + + + A G GKT M + Sbjct: 1286 LYNFSHFNPIQTQIFHCLYHTDN-----------NVLLGAPTGSGKTIAAEIAMFRVFKQ 1334 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 P ++ IA + ++ ++ W L R + L + + + Sbjct: 1335 NPDQKVVYIAPLKALVRER----INDWKERLEERLGKRVVEL--------TGDVSPDIKM 1382 Query: 165 DSKHYTITCRTYSEERPDTFVGPHN--THGMAVFNDEASGTPDIINKSILGFFTELN 219 + I + + + DE + + + N Sbjct: 1383 IASASVIVTTPEKWDGISRSWQTRSYVKKVALIVIDEIHLLGEDRGPVLEVIISRTN 1439 >gi|306822253|ref|ZP_07455634.1| possible helicase [Bifidobacterium dentium ATCC 27679] gi|309802831|ref|ZP_07696933.1| helicase C-terminal domain protein [Bifidobacterium dentium JCVIHMP022] gi|304554415|gb|EFM42321.1| possible helicase [Bifidobacterium dentium ATCC 27679] gi|308220584|gb|EFO76894.1| helicase C-terminal domain protein [Bifidobacterium dentium JCVIHMP022] Length = 1050 Score = 43.0 bits (99), Expect = 0.070, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 61/185 (32%), Gaps = 32/185 (17%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P+ Q+E + + + + I + G GKT L+A + + + Sbjct: 239 PNAMQVEALMNLAQLRKQGES-------RAIIISATGTGKTYLSA----FDVRQFKPKRM 287 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + IA E LK E + + P + S D K+ Sbjct: 288 LYIAQQEQILKKA--KESYQKVLGCPAKELGLFSG--------------ISKEHDRKYLF 331 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 T +T S RP+ V + DE K I+ +FT P+ MT+ Sbjct: 332 ATVQTMS--RPEVLVQFGKDDFDYILIDEVHHAAADSYKRIIDYFT---PDFMLGMTATP 386 Query: 231 RRLNG 235 R +G Sbjct: 387 ERTDG 391 >gi|283456569|ref|YP_003361133.1| DNA/RNA helicase [Bifidobacterium dentium Bd1] gi|283103203|gb|ADB10309.1| DNA/RNA helicase (DEAD/DEAH box family) [Bifidobacterium dentium Bd1] Length = 1050 Score = 43.0 bits (99), Expect = 0.070, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 61/185 (32%), Gaps = 32/185 (17%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P+ Q+E + + + + I + G GKT L+A + + + Sbjct: 239 PNAMQVEALMNLAQLRKQGES-------RAIIISATGTGKTYLSA----FDVRQFKPKRM 287 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + IA E LK E + + P + S D K+ Sbjct: 288 LYIAQQEQILKKA--KESYQKVLGCPAKELGLFSG--------------ISKEHDRKYLF 331 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 T +T S RP+ V + DE K I+ +FT P+ MT+ Sbjct: 332 ATVQTMS--RPEVLVQFGKDDFDYILIDEVHHAAADSYKRIIDYFT---PDFMLGMTATP 386 Query: 231 RRLNG 235 R +G Sbjct: 387 ERTDG 391 >gi|251792124|ref|YP_003006844.1| CRISPR-associated helicase Cas3 domain-containing protein [Aggregatibacter aphrophilus NJ8700] gi|247533511|gb|ACS96757.1| crispr-associated helicase Cas3 domain protein [Aggregatibacter aphrophilus NJ8700] Length = 763 Score = 43.0 bits (99), Expect = 0.070, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 48/175 (27%), Gaps = 14/175 (8%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 G GKT + L +I + + ++ AE K L + E Sbjct: 269 PTGGGKTFTSMAFALEHAKRHDMRRVIYVIPFTSIIEQNA-AEFRKAFGELGEQAVLEHH 327 Query: 145 SLSLHPS-GWYAELLEQSMGIDSKHYTITCRTYS-------EERPDTFVGPHNTHGMAVF 196 S A + + ++ I T +R HN G + Sbjct: 328 STFDDGKLQNEATKDKLRLASENWDAPIVVTTAVQFFESLFADRSSRCHKLHNIAGSVII 387 Query: 197 NDEASGTPDI----INKSILGFFTELNPNRFWIMTSNTR-RLNGWFYDIFNIPLE 246 DEA P I ++I + + + + FY F E Sbjct: 388 LDEAQMLPLNLLLPIMQAIKELAQNYHCSVVMCTATQPAVQAENGFYRGFENVRE 442 >gi|171742334|ref|ZP_02918141.1| hypothetical protein BIFDEN_01443 [Bifidobacterium dentium ATCC 27678] gi|171277948|gb|EDT45609.1| hypothetical protein BIFDEN_01443 [Bifidobacterium dentium ATCC 27678] Length = 1050 Score = 43.0 bits (99), Expect = 0.070, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 61/185 (32%), Gaps = 32/185 (17%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P+ Q+E + + + + I + G GKT L+A + + + Sbjct: 239 PNAMQVEALMNLAQLRKQGES-------RAIIISATGTGKTYLSA----FDVRQFKPKRM 287 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + IA E LK E + + P + S D K+ Sbjct: 288 LYIAQQEQILKKA--KESYQKVLGCPAKELGLFSG--------------ISKEHDRKYLF 331 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 T +T S RP+ V + DE K I+ +FT P+ MT+ Sbjct: 332 ATVQTMS--RPEVLVQFGKDDFDYILIDEVHHAAADSYKRIIDYFT---PDFMLGMTATP 386 Query: 231 RRLNG 235 R +G Sbjct: 387 ERTDG 391 >gi|164656084|ref|XP_001729170.1| hypothetical protein MGL_3637 [Malassezia globosa CBS 7966] gi|159103060|gb|EDP41956.1| hypothetical protein MGL_3637 [Malassezia globosa CBS 7966] Length = 869 Score = 43.0 bits (99), Expect = 0.070, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 42/123 (34%), Gaps = 11/123 (8%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 ++ G+GKT + A ++L + P II +A + V++ Sbjct: 250 NVLVALPTGLGKTFIAAVVILNMFRWFPQGKIIFVAPTR--------PLVAQQQQACHSI 301 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 ++ +G L + + +T +T+ + + P + V D Sbjct: 302 CGLPW-DTAIELTGSKKRTLRDDEWHAKRIFYMTPQTFENDLLSSTCDPS--DVICVVVD 358 Query: 199 EAS 201 EA Sbjct: 359 EAH 361 >gi|321448120|gb|EFX61322.1| hypothetical protein DAPPUDRAFT_340135 [Daphnia pulex] Length = 157 Score = 43.0 bits (99), Expect = 0.071, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 4/93 (4%) Query: 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAIS-AGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ ++ + + + AGRG GKT A + +PG + Sbjct: 30 WQ---FRWLNEQALKHQIEPAGDWWNIWLLLAGRGAGKTRAAAETLASWAWEQPGTRWLV 86 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 A + LK T + S + ++P + S Sbjct: 87 SAPTSGDLKGTCFEGESGLIKVIPPLLIAKYNS 119 >gi|295675218|ref|YP_003603742.1| helicase domain protein [Burkholderia sp. CCGE1002] gi|295435061|gb|ADG14231.1| helicase domain protein [Burkholderia sp. CCGE1002] Length = 1173 Score = 43.0 bits (99), Expect = 0.071, Method: Composition-based stats. Identities = 35/227 (15%), Positives = 59/227 (25%), Gaps = 34/227 (14%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT + ++ L+ I+ +A + V +W L + Sbjct: 131 GAGKTIMAGLLIRELLMRADAARILIVAP---------GSLVEQWQDELLEKFGLRFTLF 181 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 S D + + SEE + V DEA Sbjct: 182 SRELVDHSVTGNPFE-DHDLLVARLDQLSRSEELQEKLKLSRFD---LVVVDEAHKLSAT 237 Query: 207 INKS--------ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 S LG F +MT+ N ED++ + + Sbjct: 238 WFGSKINETKRFKLGQLLGSVARHFLLMTATP----------HNGKEEDFQLF-LSLLDS 286 Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA 305 + F +G SD+ R + + + P A Sbjct: 287 DRFYGKFRDGAHKV--DVSDLMRRMVKEDLLKFDGTRLFPERVAYTA 331 >gi|12045285|ref|NP_073096.1| DEAD-box ATP dependent DNA helicase [Mycoplasma genitalium G37] gi|255660071|ref|ZP_05405480.1| DEAD-box ATP dependent DNA helicase [Mycoplasma genitalium G37] gi|1723162|sp|P47664|Y425_MYCGE RecName: Full=Probable ATP-dependent RNA helicase MG425 gi|3845018|gb|AAC72446.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Mycoplasma genitalium G37] gi|166078714|gb|ABY79332.1| ATP-dependent RNA helicase, DEAD/DEAH box family [synthetic Mycoplasma genitalium JCVI-1.0] Length = 449 Score = 43.0 bits (99), Expect = 0.071, Method: Composition-based stats. Identities = 18/166 (10%), Positives = 39/166 (23%), Gaps = 12/166 (7%) Query: 66 CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG--MSIICIANSETQLKNT 123 + + + G GKT A ++ + + IA + ++ Sbjct: 29 IQQISIPQFLSEKNLIVHSPTGTGKTAAFAIPIIEKLLKEDQTAKPTLVIAPTRELVEQI 88 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 + + + L + +Q I + I Sbjct: 89 ----------KTTFSNIAKNKKLRIISLIGGVPAWKQIKKIKTNPQIIVGTMGRIMDLLE 138 Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 H + + DE D K + E + I + Sbjct: 139 RKAIHFSDLEHLIIDEVDLMLDRGFKKQIFNLLEQINSFKQIAVYS 184 >gi|332184062|gb|AEE26316.1| Terminase large subunit [Francisella cf. novicida 3523] Length = 602 Score = 43.0 bits (99), Expect = 0.072, Method: Composition-based stats. Identities = 38/252 (15%), Positives = 75/252 (29%), Gaps = 37/252 (14%) Query: 43 KPLEHFSQPHRW-----QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97 P ++P RW Q +A++ P + K ++ G +GKT L Sbjct: 35 LPPGTSAKPGRWKTIPYQQGVFDAIED----------PKVSKISLEWGAQLGKTALLNNT 84 Query: 98 MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 + + I +P I+ + SE+ LK W E P + + L + Sbjct: 85 IGYYIEHKPESQIM-MQPSESDLKT--WLETK----FNPMVDYSKSVQEKLAKPRGRDGV 137 Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD----IINKSILG 213 Q M + + + ++ DE G + Sbjct: 138 NNQKMKKYKGGFLMFAW------AGSPNTQRGRSAPKIYCDEVDGYERSPEGHPVNLVWQ 191 Query: 214 FFTELNPNRFWIMTSNTR-RLNGWFYDIFNIPLED----WKRYQIDTRTVEGIDSGFHEG 268 R I+TS + N + D FN + +T++ + + + Sbjct: 192 RAATFGRKRKLILTSTPTIKGNSFIDDSFNSGDRRRYYIPCPHCGHYQTLKWQNVQWQKD 251 Query: 269 IISRYGLDSDVA 280 + + + Sbjct: 252 EKGIHLPYTAMY 263 >gi|308272255|emb|CBX28861.1| hypothetical protein N47_B20070 [uncultured Desulfobacterium sp.] Length = 1762 Score = 43.0 bits (99), Expect = 0.072, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 70/241 (29%), Gaps = 26/241 (10%) Query: 8 DQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCH 67 +K+ Q L L+ A + K F+ RFFP K + + +E++ Sbjct: 1068 MEKIRQALA--LVTAYFTMDRKGFIKRFFPDNHKEIERATSAASY---GRIVESLKNPIQ 1122 Query: 68 SNVNNSNPTIFKCAISAGRGIGKTTLN---AWMMLWLISTRPGMSIICIANSETQL--KN 122 ++ S+P I AG G GKTT+ +L + PG + N L + Sbjct: 1123 ESIVCSSPED-NILILAGPGSGKTTVVIHRCAYLLRVERVPPGSILALCFNHSAALSIRK 1181 Query: 123 TLWAEVSK-----------WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 LW + L+M F ++ + + +++ Sbjct: 1182 RLWDLIGSEARDVTVLTYHALAMRIAGRSFAQNDSAISKDKESLTKAFEDIILEAIDLLS 1241 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG----FFTELNPNRFWIMT 227 + PD + DE I + + + Sbjct: 1242 GQKELQGIEPDDIRDRLLGGYRHILVDEYQDIDQQQYHLISALAGRTLKDPDRKLSILAV 1301 Query: 228 S 228 Sbjct: 1302 G 1302 >gi|295697280|ref|YP_003590518.1| CRISPR-associated helicase Cas3 [Bacillus tusciae DSM 2912] gi|295412882|gb|ADG07374.1| CRISPR-associated helicase Cas3 [Bacillus tusciae DSM 2912] Length = 806 Score = 43.0 bits (99), Expect = 0.072, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 38/166 (22%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 + NP + G+GKT + L + R I+ +A Sbjct: 266 ALRQRVHQQAVERYRQNPEGDLYVLKLPTGLGKTLTALRVALEIAGDRGKERIVYVAPYL 325 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177 T L + H M L + + + R + Sbjct: 326 TILSQAAGEIAKASGLEVMEHHSLSMTEDREWDDKAILLLESWQSPVVATTFNQMFRAFF 385 Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223 +R + V DE D + + L Sbjct: 386 AQRAQETLRLAGLENSVVIVDEPQIVDDSVWQPFLAMIQGAAREMN 431 >gi|261248365|emb|CBG26202.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] Length = 589 Score = 43.0 bits (99), Expect = 0.073, Method: Composition-based stats. Identities = 40/354 (11%), Positives = 84/354 (23%), Gaps = 61/354 (17%) Query: 34 RFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93 F I+ F Q +QL++ A H + I R IG T Sbjct: 128 FFSDEAIEKLEELFFDQSFEYQLQWYRAGLEHRIRD------------ILKSRQIGATFY 175 Query: 94 NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF--EMQSLSLHPS 151 + L G + I ++ S+TQ ++ E + L + + Sbjct: 176 FSREALLRALKT-GHNQIFLSASKTQAY--VFREYIIQFARLVDVDLTGDPIVIGNNGAK 232 Query: 152 GWYAELLEQSMGIDSKH-------YTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS--- 201 + + + + + + H + Sbjct: 233 LIFLGTNSNTAQSHNGDLYVDEIFWIPNFQKLRKVASGMASQKHLRSTYFSTPSTLAHGA 292 Query: 202 --GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 + + I S++ G W++ + Sbjct: 293 YPFWSGELFNKGRASAADR----IEIDISHSALAGGLLC-----ADGQWRQIVTIEDALA 343 Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM----SREAIDDLY 315 G + F + R D D + + +F + + P ++ M + Sbjct: 344 GGCTLFDLDQLRRENSDED-FKNLFMCEFVD-DKASVFPFEELQRCMVDVMETWEDFAPF 401 Query: 316 A-------PLIMGCDIAGEGGDKTVVVFRRGN--------IIEHIFDWSAKLIQ 354 A P+ +G D + G + + W Sbjct: 402 ADHPFGSRPVWIGYDPSHTGD--SAGCVVLAPPVVSGGKFRMLERHQWKGMDFA 453 >gi|255953117|ref|XP_002567311.1| Pc21g02470 [Penicillium chrysogenum Wisconsin 54-1255] gi|211589022|emb|CAP95144.1| Pc21g02470 [Penicillium chrysogenum Wisconsin 54-1255] Length = 1858 Score = 43.0 bits (99), Expect = 0.073, Method: Composition-based stats. Identities = 24/216 (11%), Positives = 61/216 (28%), Gaps = 20/216 (9%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P RWQ E ++ +D + I A GKT ++ + M ++ + Sbjct: 792 PDRWQREVLDQIDAKKSAF------------IVAPTSAGKTFISFYAMRQILKEDHDGIL 839 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + +A ++ + +++ P + ++H + + + + Sbjct: 840 VYVAPTKALVNQIAAEVQARFSKAFPAK-TSGKSVWAIHTRDYRINNPQGCQILITVPQI 898 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM---T 227 + + + + + DE + + ++P + Sbjct: 899 LQIMLLNPSNANAWTPRLRR----IIFDEIHCIGQADDGVVWEQLLLMSPCPIIALSATV 954 Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 N + W D K Q R + Sbjct: 955 GNPQEFYNWLDFAQRTNGFDLKMIQHQHRYSDLRKY 990 >gi|303323243|ref|XP_003071613.1| DEAD/DEAH box helicase domain containing protein [Coccidioides posadasii C735 delta SOWgp] gi|240111315|gb|EER29468.1| DEAD/DEAH box helicase domain containing protein [Coccidioides posadasii C735 delta SOWgp] Length = 1910 Score = 43.0 bits (99), Expect = 0.074, Method: Composition-based stats. Identities = 20/217 (9%), Positives = 59/217 (27%), Gaps = 22/217 (10%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +P WQ + ++ +D + A GKT ++ + M ++ Sbjct: 835 EPDEWQRKVLDEIDA------------KKSLFVVAPTSAGKTFISFYAMKKVLEDDDDGV 882 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ +A ++ + +++ H + + + + + Sbjct: 883 LVYVAPTKALVNQIAAEIQARFSKSFKHGGKSVWGIHTRDYRINNPTGCQVLVTV---PH 939 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM--- 226 + S ++ ++ + DE + + + L P + Sbjct: 940 ILQIMLLSPANATSW----SSRVKRIIFDEVHCIGQVDDGVVWEQLLLLAPCPIIALSAT 995 Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 N ++ W D + R + Sbjct: 996 IGNPQKFCKWLQMTQKANGIDLTMIEHSHRYSDLRKY 1032 >gi|124004360|ref|ZP_01689206.1| hypothetical protein M23134_05802 [Microscilla marina ATCC 23134] gi|123990430|gb|EAY29929.1| hypothetical protein M23134_05802 [Microscilla marina ATCC 23134] Length = 537 Score = 43.0 bits (99), Expect = 0.074, Method: Composition-based stats. Identities = 39/266 (14%), Positives = 70/266 (26%), Gaps = 37/266 (13%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 AG+G GKT + LI+ PG+ AN++ QL ++ V L + E Sbjct: 32 MAGQGAGKTHGAGLISFRLITNFPGVFGFMGANTDMQLTDSTLYRVFLVWKDLGLEEYDE 91 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE-----ERPDTFVGPHNTHGMAVFN 197 + G G K Y ++ + + Sbjct: 92 YLGQGDYVVGTQPPRHFSREGHAFKSYRNKISFWNGCVVFIGSLENYKAHDGKEFAWAIL 151 Query: 198 DEASGTPDI-INKSILGFFTELNPNRFWIMT----------SNT---RRLNGWFYDIFNI 243 DE T + + + ILG + + Y + Sbjct: 152 DETKDTREEAVQEVILGRLRQQGLYISQTRVGALTSEEYDEGSPVAANLPFNPLYIFTSP 211 Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG-----------QFPQQE 292 W D + + E I ++ + ++ G + Sbjct: 212 AKVPWIN---DWFELS----EYEEEIKAKIYDPPQYFKKKVGGGSKFVVISATHLNLKNL 264 Query: 293 VNNFIPHNYIEEAMSREAIDDLYAPL 318 +N+I A R + PL Sbjct: 265 PSNYIQKQEANLASHRHGMLIYGDPL 290 >gi|168822412|ref|ZP_02834412.1| putative conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205341123|gb|EDZ27887.1| putative conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 589 Score = 43.0 bits (99), Expect = 0.075, Method: Composition-based stats. Identities = 40/354 (11%), Positives = 84/354 (23%), Gaps = 61/354 (17%) Query: 34 RFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93 F I+ F Q +QL++ A H + I R IG T Sbjct: 128 FFSDEAIEKLEELFFDQSFEYQLQWYRAGLEHRIRD------------ILKSRQIGATFY 175 Query: 94 NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF--EMQSLSLHPS 151 + L G + I ++ S+TQ ++ E + L + + Sbjct: 176 FSREALLRALKT-GHNQIFLSASKTQAY--VFREYIIQFARLVDVDLTGDPIVIGNNGAK 232 Query: 152 GWYAELLEQSMGIDSKH-------YTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS--- 201 + + + + + + H + Sbjct: 233 LIFLGTNSNTAQSHNGDLYVDEIFWIPNFQKLRKVASGMASQKHLRSTYFSTPSTLAHGA 292 Query: 202 --GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 + + I S++ G W++ + Sbjct: 293 YPFWSGELFNKGRASAADR----IEIDISHSALAGGLLC-----ADGQWRQIVTIEDALA 343 Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM----SREAIDDLY 315 G + F + R D D + + +F + + P ++ M + Sbjct: 344 GGCTLFDLDQLRRENSDED-FKNLFMCEFVD-DKASVFPFEELQRCMVDVMETWEDFAPF 401 Query: 316 A-------PLIMGCDIAGEGGDKTVVVFRRGN--------IIEHIFDWSAKLIQ 354 A P+ +G D + G + + W Sbjct: 402 ADHPFGSRPVWIGYDPSHTGD--SAGCVVLAPPVVSGGKFRMLERHQWKGMDFA 453 >gi|253699460|ref|YP_003020649.1| type III restriction protein res subunit [Geobacter sp. M21] gi|251774310|gb|ACT16891.1| type III restriction protein res subunit [Geobacter sp. M21] Length = 1042 Score = 43.0 bits (99), Expect = 0.075, Method: Composition-based stats. Identities = 39/323 (12%), Positives = 91/323 (28%), Gaps = 58/323 (17%) Query: 4 LISTDQKLEQELHEMLMHAE--CVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEA 61 + D + + A + F +PH +Q +EA Sbjct: 276 FVPFDPEQPTLFRTAINRARHRSQDNPAIFFDL---------------RPHPFQERILEA 320 Query: 62 VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM-LWLISTRPGMSIICIANSETQL 120 + ++ ++ + A G GKT + A+ + + R ++ IA+ Sbjct: 321 LA------RERTSHDRWRNLVIAATGTGKTVIAAFDFKNFFEAKRRQARLLFIAHRL--- 371 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 L + ++L +++ E+ M + + + + Sbjct: 372 -EILQKAQGTFRNVLRDQNFGELLVGEYQAVRLEHLFCSVGMLANRRLWEQVGSGF---- 426 Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240 + DEA S F P +T+ R++G Sbjct: 427 -----------YDYIVIDEAH---HSTASSYRPIFENFAPEILLGLTATPERMDGG---- 468 Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFH-----EGIISRYGLDSDVARIEILGQFPQQEVNN 295 N+ + R+ + R E ++ G+ + + G++ + + N Sbjct: 469 -NVAADFGNRFAAEIRLPEALEEKLLCPFHYFGVADPIAISGEQFWRN--GKYNESALEN 525 Query: 296 FIPHNYIEEAMSREAIDDLYAPL 318 + + +AI Sbjct: 526 VYVMDNVRAKQRVDAIITALTRY 548 >gi|312087840|ref|XP_003145629.1| DEAD/DEAH box helicase [Loa loa] gi|307759209|gb|EFO18443.1| DEAD/DEAH box helicase [Loa loa] Length = 483 Score = 43.0 bits (99), Expect = 0.076, Method: Composition-based stats. Identities = 17/156 (10%), Positives = 46/156 (29%), Gaps = 11/156 (7%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGM-SIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + A G GKT + + + + ++ + G ++ +A + + ++ ML Sbjct: 57 LLVQAKSGTGKTMVFSLLAVENLNAQFGRPQVLIVAPTREIASQIV-----SYIRML--- 108 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + + + G + E + + + T +H D Sbjct: 109 --APVVVIRMFVGGNEKGVAEDIQKLKKSIHIVVGTTGRLCHLVRINALRLSHVRLFVLD 166 Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 EA + + + + P + + Sbjct: 167 EADKLMEDNFQKEINYLFSALPPEKQVAVFSATYPY 202 >gi|312870719|ref|ZP_07730826.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus iners LEAF 3008A-a] gi|311093731|gb|EFQ52068.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus iners LEAF 3008A-a] Length = 458 Score = 43.0 bits (99), Expect = 0.077, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 55/231 (23%), Gaps = 23/231 (9%) Query: 40 IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99 KG +F +P Q + + + H + A G GKT L Sbjct: 15 KKGLEKINFLKPTPVQQQVLPLLLAHQ------------NVVVQAVTGSGKTHAY----L 58 Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159 I ++C T L +++ K L R E+ + G + Sbjct: 59 IPIINDLDSELLCTQAVITAPSRELASQLYKVARQL--RDAAELNISIEYLGGGNDRTRQ 116 Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG-TPDIINKSILGFFTEL 218 ++ I DEA + L Sbjct: 117 LEKASNNAPQLIIATPGRLHDFAIKKIIKLDQVSTFIIDEADMTLDMGFLNQMDDIMVRL 176 Query: 219 NPNRFWIMTSN--TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267 N S +L + P ++ + + + + Sbjct: 177 GTNVTIGAFSATIPVKLEQFLNKYMEHP--EFVVIDNPSVISPTVANDLID 225 >gi|195171938|ref|XP_002026759.1| GL13223 [Drosophila persimilis] gi|194111693|gb|EDW33736.1| GL13223 [Drosophila persimilis] Length = 348 Score = 43.0 bits (99), Expect = 0.077, Method: Composition-based stats. Identities = 21/172 (12%), Positives = 40/172 (23%), Gaps = 4/172 (2%) Query: 60 EAVDVHCHSNVNNSNPTIFK-CAISAGRGIGKTTLNAWMMLWLISTRPGMSI--ICIANS 116 V P + +SA G GKT A ++ L++ R + + + Sbjct: 170 RTVIPWILEAQGQPAPLRPRDICVSAPTGSGKTLAFAIPIVQLLNNRVRCKVRALVVLPV 229 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 + + S + L + + +T Sbjct: 230 AELALQV-FKVIRALCSKTELEVCLLSKQHRLEDEQEKLVEVYKGQIYSKADIVVTTPGR 288 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 + G + DEA D + L F + Sbjct: 289 LVDHLHATKGFCLKSLKFLVIDEADRIMDAFFQKRLEPFGQPRRETSKSAAG 340 >gi|145638668|ref|ZP_01794277.1| ATP-dependent RNA helicase [Haemophilus influenzae PittII] gi|145272263|gb|EDK12171.1| ATP-dependent RNA helicase [Haemophilus influenzae PittII] Length = 439 Score = 43.0 bits (99), Expect = 0.078, Method: Composition-based stats. Identities = 36/258 (13%), Positives = 67/258 (25%), Gaps = 32/258 (12%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 K + +S+P Q+E + A C SA G GKTT L Sbjct: 17 KALEKKGYSRPTAIQMEAIPAAMEECD------------VLGSAPTGTGKTTAFLLPALQ 64 Query: 101 LISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 + P I+ + + AE ++ L+ H + + + + Sbjct: 65 HLLDYPRRKPGPPRILVLTPTRELAMQV--AEQAEELAQFTHLNIATITGGVAYQNHGDV 122 Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 Q + + + + DEA + Sbjct: 123 FNTNQDL--------VVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKI 174 Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275 R + + D L D + + Y Sbjct: 175 AAETRWRKQTLLFSATLEGELLVDFAERLLNDPVKVD---AEPSRRERKKINQW--YYHA 229 Query: 276 DSDVARIEILGQFPQQEV 293 DS+ +I++L +F + E Sbjct: 230 DSNEHKIKLLARFIETEE 247 >gi|194172973|ref|YP_002003617.1| PhoH-like protein [Escherichia phage rv5] gi|114796011|gb|ABI79185.1| PhoH-like protein [Escherichia phage rv5] Length = 262 Score = 43.0 bits (99), Expect = 0.079, Method: Composition-based stats. Identities = 18/160 (11%), Positives = 38/160 (23%), Gaps = 14/160 (8%) Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 + + ++ G GKT + + L+ II K + + Sbjct: 48 QQKYLDYLGSRKIIIVNGVFGSGKTFMASAYAGDLLRKNEIDKIIVARPYVQTGKTSGFK 107 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER--PDTF 184 + + P + + + + E ++ Sbjct: 108 PGNAMQKLWP------------YLRSMMDTICRRVGKGAFAAMLGDGQNSRIEICEVESI 155 Query: 185 VGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224 G V DEA T SI+ ++ Sbjct: 156 RGRSFDERCFVLIDEAQQTNPEEMLSIITRISDQATLVIM 195 >gi|323497774|ref|ZP_08102788.1| ATP-dependent RNA helicase SrmB [Vibrio sinaloensis DSM 21326] gi|323317121|gb|EGA70118.1| ATP-dependent RNA helicase SrmB [Vibrio sinaloensis DSM 21326] Length = 398 Score = 43.0 bits (99), Expect = 0.079, Method: Composition-based stats. Identities = 40/316 (12%), Positives = 77/316 (24%), Gaps = 50/316 (15%) Query: 43 KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102 + +P + Q E + SA G GKT L + Sbjct: 18 IEEMGYDRPTQIQAEAIPQALDG------------RDILASAPTGTGKTAAFVLPALQYL 65 Query: 103 STRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 P ++ + + AE ++ L+ + F + + Sbjct: 66 QDFPRRKPGPARVLILTPTRELAMQV--AEQARALAKHTKLNIFTITGGVQYQEHADILG 123 Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217 Q + + + DEA D+ + + Sbjct: 124 KTQDV--------VVATPGRLMEYINAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSS 175 Query: 218 LNPNRFWIMTSNTR----RLNGWFYDIFNIPLE-------DWKRYQIDTRTVEGIDSGFH 266 R + + G+ D+ P E ++ Sbjct: 176 ECRWRKQTHLYSATLEGKGVEGFTADLLKDPAEIDAEPSRRERKKIAQWYHRADDMQHKF 235 Query: 267 EGIISRYGLDSDVARI-----EILGQFPQQEVNNFIPHNYI--EEAMSRE-----AIDDL 314 E + +D + E LG+ Q +P +I E R D Sbjct: 236 ELLKHIITEQADRTIVFLKTRERLGELRAQLEAAQVPCAWIQGEMPQDRRNNAIARFRDG 295 Query: 315 YAPLIMGCDIAGEGGD 330 +++ D+A G D Sbjct: 296 TVNVLLATDVAARGID 311 >gi|315656930|ref|ZP_07909817.1| SNF2 domain protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492885|gb|EFU82489.1| SNF2 domain protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 458 Score = 43.0 bits (99), Expect = 0.079, Method: Composition-based stats. Identities = 39/292 (13%), Positives = 81/292 (27%), Gaps = 43/292 (14%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG--M 108 PH +Q E + H + AI G G+GK+ + +W + Sbjct: 5 PHNYQSTATEFIIDHDEA------------AILLGMGLGKSVIT-LTAIWQLMLDYFTIS 51 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 ++ +A ++T AE+ KW + + + + + + + ++ Sbjct: 52 RVLVVAP-LRVARDTWPAEIRKWDHLDGLTVAVAVGTKADRLAALAKSAIVTIINRENIP 110 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 + + + V DE S + K + W+ + Sbjct: 111 WLVN------------QMGGSWPFDMVVIDELSSFKNHRAKRFTALVKMRPFVKRWVGLT 158 Query: 229 NTRRLNGWFYDIF--------NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280 T NG RY+ + + R G + ++ Sbjct: 159 GTPASNGLMDVWAQFRLLDGGERLGRFITRYRERWFVPDKRNGMQVFTYKPRAGAEDEIY 218 Query: 281 RI-------EILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325 + Q + E R+ + L A L++ D A Sbjct: 219 GVIGDMTLSMRTTDHLQLPELTVTTMPVVLEPKERKVYEQLKADLVLDLDGA 270 >gi|241760032|ref|ZP_04758130.1| CRISPR-associated helicase Cas3 domain protein [Neisseria flavescens SK114] gi|241319486|gb|EER55916.1| CRISPR-associated helicase Cas3 domain protein [Neisseria flavescens SK114] Length = 762 Score = 43.0 bits (99), Expect = 0.079, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 47/175 (26%), Gaps = 14/175 (8%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 G GKT + L +I + + ++ AE K L + E Sbjct: 268 PTGGGKTFTSMAFALEHAKRHDMRRVIYVIPFTSIIEQNA-AEFRKAFGELGEQAVLEHH 326 Query: 145 SLSLHPS-GWYAELLEQSMGIDSKHYTITCRTYS-------EERPDTFVGPHNTHGMAVF 196 S A + + ++ I T +R HN G + Sbjct: 327 STFDDGKLQNEATKDKLRLASENWDAPIVVTTAVQFFESLFADRSSRCRKLHNIAGSVII 386 Query: 197 NDEASGTPDI----INKSILGFFTELNPNRFWIMTSNTR-RLNGWFYDIFNIPLE 246 DEA P I ++I + + + FY F E Sbjct: 387 LDEAQMLPLNLLLPIMQAIKELAQNYRCSVVMCTATQPAVQAENGFYRGFENVRE 441 >gi|149912233|ref|ZP_01900811.1| ATP-dependent RNA helicase [Moritella sp. PE36] gi|149804692|gb|EDM64744.1| ATP-dependent RNA helicase [Moritella sp. PE36] Length = 421 Score = 43.0 bits (99), Expect = 0.079, Method: Composition-based stats. Identities = 30/294 (10%), Positives = 65/294 (22%), Gaps = 39/294 (13%) Query: 66 CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMSIICIANSETQL 120 V + SA G GKT + + P ++ + + Sbjct: 27 IQQQVLPTAMEGRDILASAPTGTGKTLAFLLPAIQHLLDFPRRELGPGRVLILTPTRELA 86 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 + + + + + + + Sbjct: 87 SQVFQQ----------AKMLAAYTDHKVSMVTGGVDYALHAEVLKNNLDIVIATPGRLLE 136 Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR---RLNGWF 237 + DEA D+ + T R M + R F Sbjct: 137 YIRRDAFECAAIEVLILDEADRMLDMGFYDDVKRITNEMTRRQQTMLFSATLEGRGIDRF 196 Query: 238 YD-------IFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR-------IE 283 + F ++ +I + + ++ + D R E Sbjct: 197 AEELLNEPVEFTANPSRREKAKIHQFMHHVDNHAHKQALLVHWLRDESTTRSIVFVKTRE 256 Query: 284 ILGQFPQQEVNNFIP-----HNYIEEAMSREAIDDLYA--PLIMGCDIAGEGGD 330 L + + IP + +R +++ D+A G D Sbjct: 257 RLAELVSYLQSQDIPCAYLRGEMDQAKRTRSLNQFKNDKVKVLIATDVAARGID 310 >gi|332969227|gb|EGK08257.1| DNA/RNA helicase [Desmospora sp. 8437] Length = 788 Score = 43.0 bits (99), Expect = 0.080, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 56/185 (30%), Gaps = 34/185 (18%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 PH Q E + ++D + + + G+GKT ++A + I Sbjct: 199 PHEIQREALRSLDATMEEGYD-------RAMVVMATGLGKTYMSA----FFADQMKFGKI 247 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + IA+ E L+ E L ++ S D++ Sbjct: 248 LFIAHREEILRQ------------------AEATFLGVNSSWRTGFFNGSRKERDAEVLF 289 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 + T S + DE + ++G F +P MT+ Sbjct: 290 ASIHTLSMLHH--LSSFRPDEFDLIIVDEFHHAAAKSYRRVIGHF---HPRFLLGMTATP 344 Query: 231 RRLNG 235 RL+G Sbjct: 345 DRLDG 349 >gi|90961988|ref|YP_535904.1| DNA/RNA helicase [Lactobacillus salivarius UCC118] gi|90821182|gb|ABD99821.1| DNA/RNA helicase, DEAD/DEAH box family [Lactobacillus salivarius UCC118] Length = 986 Score = 43.0 bits (99), Expect = 0.081, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 62/195 (31%), Gaps = 31/195 (15%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 + +P++ Q E ++ + K I + G GKT L A + Sbjct: 210 EDNSNYSIIKPNKMQKEALKNL-------QKLRLLRETKGLIISATGTGKTYLAALDV-- 260 Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 + +A+ E LK +L + +L LS + Sbjct: 261 --KNYNPKRFLFVAHREQILKKSL----DSFHKVLGGDKKTNYGILSGNAK--------- 305 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220 D+K+ T +T S+ + + DEA I +L +FT P Sbjct: 306 --NTDAKYLFATVQTLSK--AENLNQFKRDEFDYILIDEAHHVGSKIYGKLLDYFT---P 358 Query: 221 NRFWIMTSNTRRLNG 235 + MT+ R + Sbjct: 359 DFLLGMTATPERSDD 373 >gi|330828264|ref|YP_004391216.1| ATP-dependent RNA helicase SrmB [Aeromonas veronii B565] gi|328803400|gb|AEB48599.1| ATP-dependent RNA helicase SrmB [Aeromonas veronii B565] Length = 407 Score = 43.0 bits (99), Expect = 0.082, Method: Composition-based stats. Identities = 40/333 (12%), Positives = 77/333 (23%), Gaps = 53/333 (15%) Query: 27 SFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR 86 SF +F P + F++P Q +E SA Sbjct: 4 SFDDF--DLHPALNRALAEMGFTRPTTIQQMVLE------------PALDGRDILASAPT 49 Query: 87 GIGKTTLNAWMMLWLISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 G GKT L + P ++ + + + Sbjct: 50 GTGKTASFLLPALQHLLDFPRRKPGPCRMLILTPTRELALQVTAH----------AKALA 99 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 +LS+ EQ + + + + DEA Sbjct: 100 AHTNLSIETIIGGVSHEEQLPALTKTTDIVVATPGRLLEYIEKEEFESHDIEVLVLDEAD 159 Query: 202 -GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 K + E + ++ S T G I + + + R+ Sbjct: 160 RMLDMGFIKDVNRIVAEARYRKHTMLFSATLEGAGLEKFANEILKDPVELHAEPPRSERR 219 Query: 261 IDSGFH--------------------EGIISRYGLDSDVARIEILGQFPQQE-VNNFIPH 299 + + E + + + E+ GQ +I Sbjct: 220 PITQWIHLADDAAHKLALLTHILKDPETQKAIIFVKTRERLAELSGQLQAAGISCAWIRG 279 Query: 300 NYIEEAMSREAI--DDLYAPLIMGCDIAGEGGD 330 + + P ++ D+A G D Sbjct: 280 EMEQSKRIESIRKFHEGEVPFLIATDVAARGID 312 >gi|159123459|gb|EDP48578.1| RNA/DNA helicase, putative [Aspergillus fumigatus A1163] Length = 648 Score = 43.0 bits (99), Expect = 0.082, Method: Composition-based stats. Identities = 27/186 (14%), Positives = 45/186 (24%), Gaps = 14/186 (7%) Query: 32 VMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT 91 V+ K P P E + C + + T I G GKT Sbjct: 352 VLYPLLVENKSPPEYLPLGPAYDFREDLNE----CQNRAVAAALTSRLSCIWGPPGTGKT 407 Query: 92 TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLH-- 149 ++ L+ RP I+ A + + N L + S + Sbjct: 408 QTVVAILQELLQRRPEERILVTAPTHNAVDNILKRYLCVAGSTGAIPLRVSTNIRKVSSD 467 Query: 150 -PSGWYAELLEQSMGIDSKHYTITCRTYSEER-------PDTFVGPHNTHGMAVFNDEAS 201 + + D + R N V DE+S Sbjct: 468 LMQYACDAMDRREFNFDPAARRRALERIQQSRLIFTTCAGAGLGLLRNEQFHTVVIDESS 527 Query: 202 GTPDII 207 + + Sbjct: 528 QQTEPM 533 >gi|257462962|ref|ZP_05627366.1| PhoH family protein [Fusobacterium sp. D12] gi|317060579|ref|ZP_07925064.1| PhoH family protein [Fusobacterium sp. D12] gi|313686255|gb|EFS23090.1| PhoH family protein [Fusobacterium sp. D12] Length = 435 Score = 43.0 bits (99), Expect = 0.083, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 44/166 (26%), Gaps = 21/166 (12%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTR-PGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + G G GKT L L + R I K+ L + Sbjct: 245 VTLVGGAGTGKTLLAIAAALEQVVERKKYKKIFIARPIIPMGKD------------LGYL 292 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT---YSEERPDTFVGPHNTHG--M 193 E + L + + S K + + + Sbjct: 293 PGSEKEKLKPWMQPIFDNIEFLSNSRGDKTGEKVVQGLESMGLMKIEPLTYIRGRSIPAG 352 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239 + DEA + K+I T + N + T + +++ + D Sbjct: 353 FIVIDEAQNLTPLEIKTI---VTRVGENTKIVFTGDPAQIDNPYLD 395 >gi|194750630|ref|XP_001957633.1| GF10505 [Drosophila ananassae] gi|190624915|gb|EDV40439.1| GF10505 [Drosophila ananassae] Length = 683 Score = 43.0 bits (99), Expect = 0.083, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 46/157 (29%), Gaps = 12/157 (7%) Query: 60 EAVDVHCHSNVNNSNPTIFK-CAISAGRGIGKTTLNAWMMLWLISTRPGMS-----IICI 113 V + P + +SA G GKT A ++ L++ R ++ + Sbjct: 166 REVIPWILEAQSKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLANRVECKIRALVVLPV 225 Query: 114 ANSETQLKNTLWAEVSK-WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 A Q+ + A +K L + +++ Y +T Sbjct: 226 AELALQVYQVISALCNKTELEVCLLSKQHKLEDEQEKLVELYKGKY-----YSKVDIVVT 280 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209 + G + + DEA D + + Sbjct: 281 TPGRLVDHLHATKGFCLKNLKFLIIDEADRIMDAVFQ 317 >gi|190149588|ref|YP_001968113.1| ATP-dependent helicase HepA [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307262908|ref|ZP_07544532.1| RNA polymerase-associated protein rapA [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|254789670|sp|B3H0F9|RAPA_ACTP7 RecName: Full=RNA polymerase-associated protein rapA; AltName: Full=ATP-dependent helicase hepA gi|189914719|gb|ACE60971.1| ATP-dependent helicase HepA [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871813|gb|EFN03533.1| RNA polymerase-associated protein rapA [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 969 Score = 43.0 bits (99), Expect = 0.083, Method: Composition-based stats. Identities = 29/261 (11%), Positives = 64/261 (24%), Gaps = 19/261 (7%) Query: 33 MRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTI-FKCAISAGRGIGKT 91 + F P R ++ H + + ++ G+GKT Sbjct: 123 RFALRYRALQHQQAQFQSPLRGMRGIRASLIPHQLHIAKEVGQRVAPRVLLADEVGLGKT 182 Query: 92 TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151 ++ + + ++ + Q + W V F+ + S Sbjct: 183 IEAGMILQQQLFSGRVERVLVLVPESLQHQ---W-LVEMLRRFNLKFSLFDEERCSDFDK 238 Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211 DS+ I + E P+ +H + DEA Sbjct: 239 ADEDGNDVSENPFDSEALVIASIDWLESSPNRAKQVLASHWDMLIVDEAHHLA---WSED 295 Query: 212 LGFF-------TELNPNRFWIMTSNTR--RLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262 ++T+ F + + + + Y + E D Sbjct: 296 EPSVGYQFVERLSKQTPAVLLLTATPEQLGQESHFARLALLDADRFYDYH--SFIAEQKD 353 Query: 263 SGFHEGIISRYGLDSDVARIE 283 ++ D ++ E Sbjct: 354 YKPVADAVATLLNDKPLSHDE 374 >gi|239827402|ref|YP_002950026.1| type III restriction protein res subunit [Geobacillus sp. WCH70] gi|239807695|gb|ACS24760.1| type III restriction protein res subunit [Geobacillus sp. WCH70] Length = 813 Score = 43.0 bits (99), Expect = 0.083, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 67/225 (29%), Gaps = 40/225 (17%) Query: 11 LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70 E EL L AE ++ ++ + + P +P Q+E +E ++ Sbjct: 187 EEVELMLPLDKAETEINERDHDVIYDP----ATVTYETIRPRFAQVEALERLEATYEEGY 242 Query: 71 NNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK 130 + K + G+GKT L A R ++ IA+ E L+ Sbjct: 243 D-------KAMVVMATGLGKTYLAA------FFARRFQKVLFIAHREEILRQ-------- 281 Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190 + + P+ + D+ + T S ++ Sbjct: 282 ----------AKRSFQRVIPNKTFGIYDRNKKDKDADIIFASIFTLSMKKH--LKAFSKD 329 Query: 191 HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 + DE + +L +F P +T+ R + Sbjct: 330 AFDLIIIDEFHHAAARSYQRVLDYF---EPKFLLGITATPDRNDN 371 >gi|260063417|ref|YP_003196497.1| terminase large subunit [Robiginitalea biformata HTCC2501] gi|88782861|gb|EAR14035.1| terminase large subunit [Robiginitalea biformata HTCC2501] Length = 481 Score = 43.0 bits (99), Expect = 0.083, Method: Composition-based stats. Identities = 29/205 (14%), Positives = 55/205 (26%), Gaps = 32/205 (15%) Query: 90 KTTLNAWMMLWLISTR---PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 KT ++WL + G +I + + K TL+ + + L Sbjct: 78 KTWSGIDFIIWLATDHHKEDGCTINIYRETYNEFKTTLYDDFKRRL------------DD 125 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 P+ ++ +S I G H F +E Sbjct: 126 FDLPNPFHDAKEVKSFKIGKSRIFFLG-----------DGKHGGGCDYAFFNEIMMQRRE 174 Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFH 266 + + FW N + W +D +P D + + I Sbjct: 175 VFDQVEMRC-----RIFWWCDYNPSFTDHWVFDSV-VPRSDTAFLRTTFKDNPFISPSEL 228 Query: 267 EGIISRYGLDSDVARIEILGQFPQQ 291 I+S + ++ G F + Sbjct: 229 NKILSYEPWEPGTYQVTEEGVFYKG 253 >gi|157363070|ref|YP_001469837.1| CRISPR-associated helicase Cas3 [Thermotoga lettingae TMO] gi|157313674|gb|ABV32773.1| CRISPR-associated helicase Cas3 [Thermotoga lettingae TMO] Length = 744 Score = 43.0 bits (99), Expect = 0.083, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 58/234 (24%), Gaps = 15/234 (6%) Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI--ICIANS 116 + N +I+A G+GKT A + + L + + + + N Sbjct: 231 LRKEFHIDLDNSLKYLDDSKIYSITAPTGLGKT--LANLKVALSLSDESLIVYALPFINI 288 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 Q T + + + + Y E Q + I+S H I T+ Sbjct: 289 IDQTVETFQKIMQDTEFDASTILPYHHLANPKYEEDIYGEKAIQKVLIESWHSQIVVTTF 348 Query: 177 SEERPDTFVGPH--NTHGMA---VFNDEASGTPDIINK---SILGFFTELNPNRFWIMTS 228 + + + DE P IL +E + + Sbjct: 349 VGLFESLLTSKRVPFFYKLLNATIILDEVQSIPHKYWNPLADILSCLSEFGTKIIFSTAT 408 Query: 229 NT---RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279 + +N L + + E + + Sbjct: 409 QPMIITKTRELINKNYNSKLNRTRIHYCGEIDYPSFMKQVEEEANKCLEKNQRL 462 >gi|120554827|ref|YP_959178.1| type III restriction enzyme, res subunit [Marinobacter aquaeolei VT8] gi|120324676|gb|ABM18991.1| type III restriction enzyme, res subunit [Marinobacter aquaeolei VT8] Length = 1043 Score = 43.0 bits (99), Expect = 0.083, Method: Composition-based stats. Identities = 27/186 (14%), Positives = 56/186 (30%), Gaps = 30/186 (16%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P Q + +E + V F+ + A G GKT ++A+ + +P Sbjct: 320 PFPHQKDILEQLS------VERDVHQRFRNLVVAATGTGKTLISAFDFQRFLKEKPNAHF 373 Query: 111 ICIANSETQLKNTLWAEVSK-WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 + +A+ E L+ E + L + L H + + + +D Sbjct: 374 LFVAHREEILRQA--REAYRGVLRNNAFGELWVGGQLPEHYRQLFVSIQTLNNQLDQLKL 431 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 T + + DE +++ +P +T+ Sbjct: 432 T------------------EDYYDYIVIDEVHHIAASSYRAV---LEHFSPEILLGLTAT 470 Query: 230 TRRLNG 235 R +G Sbjct: 471 PERHDG 476 >gi|325982111|ref|YP_004294513.1| metal dependent phosphohydrolase [Nitrosomonas sp. AL212] gi|325531630|gb|ADZ26351.1| metal dependent phosphohydrolase [Nitrosomonas sp. AL212] Length = 754 Score = 43.0 bits (99), Expect = 0.084, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 53/181 (29%), Gaps = 19/181 (10%) Query: 48 FSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107 +QP + + + + H +F + G GKT + L Sbjct: 226 ATQPPKSINQLRQRILDHSRKQAELRLG-LFSLTV--PTGGGKTYTSMAFALDHAIAHQL 282 Query: 108 MSIICIANSETQLKN--TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 II + + ++ ++ E L+ H L ++ + Sbjct: 283 RRIIYVIPFTSIIEQNAKVFREAFDDLADAVVEHHSAFDDTKL-----PNNDARDTLKLA 337 Query: 166 SKHYTI---------TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT 216 + + + +RP HN G + DEA P + + I+ + Sbjct: 338 MESWNAPVIVTTAVQFFESLFGDRPSQCRKLHNIAGSVIILDEAQTLPLKLLRPIMAAIS 397 Query: 217 E 217 E Sbjct: 398 E 398 >gi|238801660|ref|YP_002922716.1| gp44 [Burkholderia phage BcepIL02] gi|237688035|gb|ACR15037.1| gp44 [Burkholderia phage BcepIL02] Length = 531 Score = 43.0 bits (99), Expect = 0.084, Method: Composition-based stats. Identities = 33/326 (10%), Positives = 63/326 (19%), Gaps = 80/326 (24%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + I R +G TTL + L IA + + + Sbjct: 72 RNVILKARQLGFTTLICIIWLDHALFNANSRCGIIAQNRETAEAIF-----------RDK 120 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 F +L + H + R + R T H Sbjct: 121 VKFAYDNLPEALRDAMPLANCTQSEMLFGHNNSSIRVATSVRGGTIHRLH--------VS 172 Query: 199 EASGT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL--------- 245 E P + + G + + ++ S G FY+I Sbjct: 173 EFGKICAEAPLKAKEIVTGSIPAVPKSGILVIESTAEGREGEFYEITMRAEATAQQGRPL 232 Query: 246 --EDWKRYQIDTRTVEGIDSG--------------------------------FHEGIIS 271 D++ + + + Sbjct: 233 TPRDYRFHFYPWWQAPEYRMDAAGVVITEKDRQYFETIEAKHGITIDAEQRAWYVATRDA 292 Query: 272 RYGLDSDVARIEI----LGQFPQQEVNNFIPHNYIEEAMSREAIDD----LYAPLIMGCD 323 + + + E F + + P D Sbjct: 293 DFSGNEERMWQEYPSTPEEPFKVSTEGTYYAQQLATARKNGRFKQSLPVLTNVPCFTFWD 352 Query: 324 IAGEGGDKTVVVFRRGNIIEHIFDWS 349 I D T + + +W Sbjct: 353 IGN--SDGTAIWVLQ----RIEHEWR 372 >gi|50312271|ref|XP_456167.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49645303|emb|CAG98875.1| KLLA0F24398p [Kluyveromyces lactis] Length = 1055 Score = 43.0 bits (99), Expect = 0.084, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 40/125 (32%), Gaps = 10/125 (8%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 A++AGRG GK+ + + + +I + S LK L+ + K L ++ Sbjct: 279 VALTAGRGRGKSAAL-GISIAAAVSHGYSNIFVTSPSPENLKT-LFEFIFKGFDALGYQE 336 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + ++ + + + V DE Sbjct: 337 HIDYDIIQSTNPSFNKAIVRVDIKREHRQTIQYIIPNDSHVLGQAE--------LVVIDE 388 Query: 200 ASGTP 204 A+ P Sbjct: 389 AAAIP 393 >gi|315173781|gb|EFU17798.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis TX1346] Length = 439 Score = 42.6 bits (98), Expect = 0.085, Method: Composition-based stats. Identities = 30/253 (11%), Positives = 72/253 (28%), Gaps = 23/253 (9%) Query: 94 NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153 A +++ LI R ++ + I + ++ +++ ++ + +F++ + Sbjct: 49 VAHIIVQLI-MRYPVNAVAIRYVDNTIELSIFEQIKWAIEEQGVSKYFKVNKSPMK---- 103 Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSIL 212 + + I R + + +E A + K+I Sbjct: 104 --------ITYKPRGNYIVFRGAQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTIT 155 Query: 213 GFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDWKRYQIDTRTVEGIDSGF 265 + + N R W + E+ + + I F Sbjct: 156 NSLLRGELADGLFYKFFYSYNPPKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAF 215 Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325 E + + + A E G+ V F I+ + + + + + G D Sbjct: 216 IEEVNATRAKNPKRAEWEYDGKAIGSGVVPFDNLRVIKGCI-TDEMVANFDNIRNGLDF- 273 Query: 326 GEGGDKTVVVFRR 338 G D V Sbjct: 274 GYATDPLAFVRWH 286 >gi|258544092|ref|ZP_05704326.1| probable terminase (atpase subunit) related protein [Cardiobacterium hominis ATCC 15826] gi|258520720|gb|EEV89579.1| probable terminase (atpase subunit) related protein [Cardiobacterium hominis ATCC 15826] Length = 562 Score = 42.6 bits (98), Expect = 0.085, Method: Composition-based stats. Identities = 37/323 (11%), Positives = 82/323 (25%), Gaps = 35/323 (10%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 F E + H + +S + + + R IG T A L G + I I+ Sbjct: 110 RAFRERMYPHQMAWYEHSKKYEMRQYVKS-RQIGATYYFAQEALLTALET-GKNQIFISA 167 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 S++Q ++ +L + E LS + ++ + S I Sbjct: 168 SKSQAHIFRSNIIAFVDEVLGVQLKGEHIKLSPGTTLYFLGTNSNTAQSYSGDLYIDEYF 227 Query: 176 YSEE-----RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 + + + H + S G + + Sbjct: 228 WIPQFKKIQHVAAGMTVH-DDRRITYFSTPSTVTHEAYPLWTGAEFNKGRPKSEHI---- 282 Query: 231 RRLNGWFYDIFNIPL---EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287 + + + R I R ++ Q Sbjct: 283 --DLDVSHKALKDGRLCEDGYFRQVITIEDAINSGFDRVTMEKLRIKFPPGQFENLLMCQ 340 Query: 288 FPQQEVNNFIPHNYIEEAM------SREA-----IDDLYAPLIMGCDIAGEGGDKT--VV 334 F + ++ ++ M ++ AP+ +G D + D + V+ Sbjct: 341 FVN-DTDSIFKMAELQRCMVDAWTLWKDYTPLAPRPLDDAPVWIGYDPSRSQDDASLVVI 399 Query: 335 V--FRRGNIIEHIFD--WSAKLI 353 G + + ++ Sbjct: 400 APPRVEGGVFRIVDKQSFNGLDF 422 >gi|213511024|ref|NP_001133236.1| ATP-dependent RNA helicase DDX51 [Salmo salar] gi|209147204|gb|ACI32879.1| ATP-dependent RNA helicase DDX51 [Salmo salar] Length = 678 Score = 42.6 bits (98), Expect = 0.085, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 44/166 (26%), Gaps = 5/166 (3%) Query: 55 QLEFMEAVDVHCHSN--VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 Q E + A+ + +SA G GKT ++ + R + Sbjct: 241 QAEVIPAILESVSHGLLIGRGGYKPRDVCVSAPTGSGKTLAFVIPVIQALIGRVVCKVRV 300 Query: 113 IA--NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 +A ++ + S + + S + Sbjct: 301 LAVLPTKELAQQVC-KVFSSYAEGNSLKVVMLAGQKSFAAEQALLSENRGGISHSLADIV 359 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT 216 + + + G H + DEA D +++S L T Sbjct: 360 VATPGRLVDHINKNDGFSLEHLRFLIIDEADRMIDSMHQSWLSQVT 405 >gi|307564873|ref|ZP_07627398.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A] gi|307346409|gb|EFN91721.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A] Length = 697 Score = 42.6 bits (98), Expect = 0.085, Method: Composition-based stats. Identities = 33/277 (11%), Positives = 77/277 (27%), Gaps = 24/277 (8%) Query: 7 TDQKLEQELHEMLMHAECVLSFKNFV---MRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63 ++ ++ E + C F + + G L ++P Q +F+E ++ Sbjct: 81 YSEEDRLKVIEQFVRLRCRYDFAFWAAMYVYIKNKGGGDDVLFRLTRP---QRKFVERLE 137 Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-GMSIICIANS---ETQ 119 + + R G +T + M WL G++ + IA+ + Sbjct: 138 A------LRKANKPIRIVLLKARQWGGSTTSQLYMAWLQLIHKVGLNSLIIAHQGAGSDE 191 Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS-KHYTITCRTYSE 178 +K+ + + + ++ G + + K T Sbjct: 192 IKDMFDRMIKAYPISMLYKLGETYNENESKLVGVGHSGSIHRVPQRNCKIKIGTAERPDS 251 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 R + H + + P+ I +S I+ +T G F+ Sbjct: 252 CRGGDYNLVHLSEVGL-WKTTDGKKPEDIVRSACSGVLL--KPYTMIVYESTANGTGNFF 308 Query: 239 DIFNIPLED----WKRYQIDTRTVEGIDSGFHEGIIS 271 + ++ + +E F Sbjct: 309 QREYDAAKRGTSQFEAMFVSWFDIEQYSLPFDNDDEK 345 >gi|257437625|ref|ZP_05613380.1| putative helicase [Faecalibacterium prausnitzii A2-165] gi|257199932|gb|EEU98216.1| putative helicase [Faecalibacterium prausnitzii A2-165] Length = 1043 Score = 42.6 bits (98), Expect = 0.085, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 53/187 (28%), Gaps = 30/187 (16%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP--GM 108 P+ +Q E ++ + + + + + A G GKT ++A P Sbjct: 319 PYSYQQEILDRL------DAERTVRGYNRNLVVAATGTGKTVISALDYKRFCRQHPGQPC 372 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 ++ +A+ E LK +L ++ + EL S DS Sbjct: 373 RLLFVAHREEILKQSL------------------YTFRAVLKDANFGELYVGSHRADSID 414 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 + + + DE + P +T+ Sbjct: 415 HLFVSIQTFNSQELAAKTA-ADFYDYIVVDEFHHAAAPTYQ---KPLEYYQPKILLGLTA 470 Query: 229 NTRRLNG 235 R++G Sbjct: 471 TPERMDG 477 >gi|110680702|ref|YP_683709.1| ATP-dependent DNA helicase [Roseobacter denitrificans OCh 114] gi|109456818|gb|ABG33023.1| ATP-dependent DNA helicase, UvrD/REP family domain [Roseobacter denitrificans OCh 114] Length = 1770 Score = 42.6 bits (98), Expect = 0.085, Method: Composition-based stats. Identities = 25/245 (10%), Positives = 62/245 (25%), Gaps = 17/245 (6%) Query: 31 FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90 F+ R+ P K + L + W + +E + ++ + + AG G GK Sbjct: 1130 FMKRWMP--GKARELRRQTTSASW-KKIVEDLGNKTQESIVADDRASTNVLVLAGPGSGK 1186 Query: 91 TTLNAWMMLWLI-STRPGMS-IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148 T + + +L+ R I+ +A + + +L++ Sbjct: 1187 TRVLVHRVAYLLRIKREDPRGILVLAYNRHAASEIRTRLAALVGEDARGVTICTCHALAM 1246 Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA-----VFNDEASGT 203 G + + T + + + + DE Sbjct: 1247 RLVGASFSGFDAQNADFDRIVTDAAGLLNGDGLSKSEAEAQRDSLLDGYRWILVDEYQDI 1306 Query: 204 PDIINKSILG----FFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 I + + + Y ++ ++++ D Sbjct: 1307 GPEEYALISAVAGRSLEDADLKLSLFAVG---DDDQNIYAFTGASVDFIRQFEADYHARP 1363 Query: 260 GIDSG 264 Sbjct: 1364 SFLIE 1368 >gi|311977923|ref|YP_003987043.1| putative DNA helicase [Acanthamoeba polyphaga mimivirus] gi|82000106|sp|Q5UQ92|YR530_MIMIV RecName: Full=Uncharacterized protein R530 gi|55417144|gb|AAV50794.1| putative DNA helicase [Acanthamoeba polyphaga mimivirus] gi|308204889|gb|ADO18690.1| putative DNA helicase [Acanthamoeba polyphaga mimivirus] Length = 494 Score = 42.6 bits (98), Expect = 0.085, Method: Composition-based stats. Identities = 15/145 (10%), Positives = 37/145 (25%), Gaps = 14/145 (9%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT + + + +I A + LK + ++ + ++ + Sbjct: 32 GSGKTYTISKITKKFLVDELIENIYYCAPTHKALK-----VLESYIKSNINASDKDLSNK 86 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + + + ++ S N V DE S Sbjct: 87 IKFMTIHKLLEFKPIIQTETGSKVFKSTKES-------KFLKNISKNLVVIDECSMISQE 139 Query: 207 INKSILGFFTELNPNRFWIMTSNTR 231 + + + I + + Sbjct: 140 MVDELNKYINLY--PIKIIYMGDPK 162 >gi|242019028|ref|XP_002429968.1| U520, putative [Pediculus humanus corporis] gi|212515023|gb|EEB17230.1| U520, putative [Pediculus humanus corporis] Length = 2114 Score = 42.6 bits (98), Expect = 0.086, Method: Composition-based stats. Identities = 25/222 (11%), Positives = 50/222 (22%), Gaps = 32/222 (14%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 F Q + Q + AV I A G GKTT+ + +L L+S P Sbjct: 1317 KFPQFNPIQTQVFNAVYNTDD-----------NIFIGAPTGSGKTTIAEFAVLRLLSQNP 1365 Query: 107 GMSIICIANSETQLKNTL--WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 + + ++ + W ++ + + S L Sbjct: 1366 DGRCVYLVAKDSLAELIFAEWQQIFNCILNVKVVLLTGETSTDLKLLA------------ 1413 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN----- 219 + T + + + DE + + + Sbjct: 1414 KGQIIITTAEKWDVLSRRWKQRKNVQNIQLFIVDELQLIGGEDGPVLEVVCSRMRYISSQ 1473 Query: 220 --PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 + S + + R V Sbjct: 1474 LEKQIRIVALSTSLADARDVSQWLGCNSNATFNFHPSVRPVP 1515 >gi|145351283|ref|XP_001420012.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580245|gb|ABO98305.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 521 Score = 42.6 bits (98), Expect = 0.086, Method: Composition-based stats. Identities = 21/215 (9%), Positives = 59/215 (27%), Gaps = 18/215 (8%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 + + + +V + + + G GKT + ++ P ++ A S Sbjct: 12 KVLNDEQLRVVEDVVSGAGKQYPYIVWGPPGTGKTLTIVECVAHVLEMFPHARVLLAAPS 71 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY------- 169 + L + ++K L+ + + + P + + D + Sbjct: 72 AF-AADILCSRLAKRLTPFKKKMIVRVNDVRRTPESYASVPFHFFKRPDPLKHLKHARVV 130 Query: 170 ---TITCRTYSEERPDTFVGPHNTHGMAVFNDEASG--TPDIINKSILGFFTELNPNRFW 224 + + N +F DEA+ P+ + + + Sbjct: 131 VCTCTSAALLRKLPMPVDSVVENWTPTHIFVDEAAQALVPETLI-----PLSLASSETSI 185 Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 ++ ++++L + K Sbjct: 186 VLAGDSKQLGPNVHSKEAAQAGLRKSLLEMWMDHS 220 >gi|22296524|ref|NP_680484.1| putative large terminase subunit [Lactobacillus phage A2] gi|22217799|emb|CAD43893.1| putative large terminase subunit [Lactobacillus phage A2] Length = 563 Score = 42.6 bits (98), Expect = 0.086, Method: Composition-based stats. Identities = 38/322 (11%), Positives = 84/322 (26%), Gaps = 60/322 (18%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFK---CAISAGRGIGKTTLNAWMMLWLISTRPG-- 107 +Q + ++ V+ + I + IS R GK+ L + ++L+ Sbjct: 67 PFQKFIIGSIY----GWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPA 122 Query: 108 -MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 + A ++ + ++ V L L + D Sbjct: 123 NKRQLYTAANDRKQAGIVFGMVKDRLRAL--------------MRKDPGIKRMVKITRDE 168 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS--GTPDIINKSILGFFTELNPNRFW 224 T DT DE + T D+I G + F Sbjct: 169 LVNLDDGSTIRSFSRDTG-LVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFI 227 Query: 225 IMTSNTRRLNGWFYDIFNIPL---------EDWKRYQIDTRTVEGIDSG--FHEG----- 268 I T+ F + E + + + V+ +D + + Sbjct: 228 ISTAGFDMNVPMFQQNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLD 287 Query: 269 ----------------IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 +R + ++ + Q ++++ + + A + D Sbjct: 288 VDTLHSQISDYLTTKLAQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTDKPD 347 Query: 313 DLYAPLIMGCDIAGEGGDKTVV 334 +G D+ D + Sbjct: 348 IRGQRAWIGIDVGRT-SDLFAI 368 >gi|41615176|ref|NP_963674.1| Hef nuclease [Nanoarchaeum equitans Kin4-M] gi|40068900|gb|AAR39235.1| NEQ387 [Nanoarchaeum equitans Kin4-M] Length = 667 Score = 42.6 bits (98), Expect = 0.087, Method: Composition-based stats. Identities = 22/199 (11%), Positives = 54/199 (27%), Gaps = 44/199 (22%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 G+GKT + ++ + P I+ +A ++ V++ + L R + ++ Sbjct: 2 PTGLGKTVIALMLIEYFKQKYPDKKILFLAPTK--------PLVNQHVEFL--RKYSDID 51 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + ++ ++ T +T + + + + DEA Sbjct: 52 PTKIVGISGDIPKEKRVKLYNADVIVATPQTIKNDLANNLIDL--NKFSLIIFDEAHR-- 107 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264 N + ++ + G D Sbjct: 108 ---------------------AVGN---------YSYTYIARNFNNRIVGLTASPGSDEE 137 Query: 265 FHEGIISRYGLDSDVARIE 283 + II ++ R E Sbjct: 138 KIKEIIENLKIERIEYRNE 156 >gi|329938003|ref|ZP_08287485.1| hypothetical protein SGM_2977 [Streptomyces griseoaurantiacus M045] gi|329302960|gb|EGG46849.1| hypothetical protein SGM_2977 [Streptomyces griseoaurantiacus M045] Length = 1589 Score = 42.6 bits (98), Expect = 0.088, Method: Composition-based stats. Identities = 25/243 (10%), Positives = 51/243 (20%), Gaps = 23/243 (9%) Query: 44 PLEHFSQPHR------WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97 P E P +Q E + + P ++ G GKT + A Sbjct: 1178 PFETIEGPRDFPRLHGYQEELVRNISTLLDRLA----PQRGMLSL--PTGAGKTRVTAEA 1231 Query: 98 MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 ++ + + + L + + + ++ E Sbjct: 1232 VIRWVKRVGDLKGPLL---WIAQTEELCEQAVQSWKFVWNKVGAERPLTISRLWSSNEVG 1288 Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF-- 215 + D + V DEA ILG Sbjct: 1289 NVVDHPHL--VVATDAKLQRCLGTDQYAWLR--EPALVIVDEAHTAISKRYTEILGLLGL 1344 Query: 216 -TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYG 274 +T+ R + + R + G + Sbjct: 1345 TQYETHRHLLGLTATPFRNTN-EDETRRLITRFGNRRLDEGVFPSGDPYRDLQEWGMLAQ 1403 Query: 275 LDS 277 ++ Sbjct: 1404 VEH 1406 >gi|327483588|gb|AEA77995.1| Helicase [Vibrio cholerae LMA3894-4] Length = 584 Score = 42.6 bits (98), Expect = 0.088, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 61/196 (31%), Gaps = 29/196 (14%) Query: 41 KGKPLEHFS-QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99 + P F P Q + +E + V S F+ + A G GKT ++A+ Sbjct: 46 EDSPTHFFDISPFPHQSDILEQLA------VERSVHQRFRNLVVAATGTGKTLISAFDFA 99 Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159 I +P + + +A+ E LK A L + H + + Sbjct: 100 RFIKAKPQANFLFVAHREEILKQARAAY-RGVLRNSAFGELWVGGHTPEHYRQLFVSIQT 158 Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219 + ++ + T+ + + DE +++ + Sbjct: 159 LNNQLEQLNLTV------------------DYYDYIVIDEVHHIAATSYRAV---LEHFS 197 Query: 220 PNRFWIMTSNTRRLNG 235 P +T+ R +G Sbjct: 198 PAILLGLTATPERHDG 213 >gi|229523373|ref|ZP_04412780.1| type III restriction enzyme res subunit [Vibrio cholerae TM 11079-80] gi|229339736|gb|EEO04751.1| type III restriction enzyme res subunit [Vibrio cholerae TM 11079-80] Length = 746 Score = 42.6 bits (98), Expect = 0.088, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 61/196 (31%), Gaps = 29/196 (14%) Query: 41 KGKPLEHFS-QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99 + P F P Q + +E + V S F+ + A G GKT ++A+ Sbjct: 9 EDSPTHFFDISPFPHQSDILEQLA------VERSVHQRFRNLVVAATGTGKTLISAFDFA 62 Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159 I +P + + +A+ E LK A L + H + + Sbjct: 63 RFIKAKPQANFLFVAHREEILKQARAAY-RGVLRNSAFGELWVGGHTPEHYRQLFVSIQT 121 Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219 + ++ + T+ + + DE +++ + Sbjct: 122 LNNQLEQLNLTV------------------DYYDYIVIDEVHHIAATSYRAV---LEHFS 160 Query: 220 PNRFWIMTSNTRRLNG 235 P +T+ R +G Sbjct: 161 PAILLGLTATPERHDG 176 >gi|229530065|ref|ZP_04419455.1| helicase [Vibrio cholerae 12129(1)] gi|229333839|gb|EEN99325.1| helicase [Vibrio cholerae 12129(1)] Length = 1046 Score = 42.6 bits (98), Expect = 0.088, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 61/196 (31%), Gaps = 29/196 (14%) Query: 41 KGKPLEHFS-QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99 + P F P Q + +E + V S F+ + A G GKT ++A+ Sbjct: 309 EDSPTHFFDISPFPHQSDILEQLA------VERSVHQRFRNLVVAATGTGKTLISAFDFA 362 Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159 I +P + + +A+ E LK A L + H + + Sbjct: 363 RFIKAKPQANFLFVAHREEILKQARAAY-RGVLRNSAFGELWVGGHTPEHYRQLFVSIQT 421 Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219 + ++ + T+ + + DE +++ + Sbjct: 422 LNNQLEQLNLTV------------------DYYDYIVIDEVHHIAATSYRAV---LEHFS 460 Query: 220 PNRFWIMTSNTRRLNG 235 P +T+ R +G Sbjct: 461 PAILLGLTATPERHDG 476 >gi|68006105|ref|NP_001018299.1| SNF2 family helicase Ino80 [Schizosaccharomyces pombe 972h-] gi|206557976|sp|O14148|INO80_SCHPO RecName: Full=Putative DNA helicase ino80 gi|159884046|emb|CAB16246.2| SNF2 family helicase Ino80 [Schizosaccharomyces pombe] Length = 1604 Score = 42.6 bits (98), Expect = 0.088, Method: Composition-based stats. Identities = 24/222 (10%), Positives = 57/222 (25%), Gaps = 25/222 (11%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GMS 109 +QL+ + + +N G+GKT + +M +L T Sbjct: 844 EYQLKGLNWLANLYEQGINGILADEM--------GLGKTVQSISVMAYLAETHNIWGPFL 895 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 +I A++ E+++++ L ++ + ++M D Sbjct: 896 VIAPASTLHN----WQQEITRFVPKLKCIPYWGSTKDRKILRKF---WCRKNMTYDENSP 948 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 T + + + DEA S ++T Sbjct: 949 FHVVVTSYQLVVLDAQYFQSVKWQYMILDEAQAIKSSS-SSRWKSLLAFKCRNRLLLTGT 1007 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271 + +++ + S + I Sbjct: 1008 P--IQNTMQELWALL----HFIMPSLFDSHNEFSEWFSKDIE 1043 >gi|46135987|ref|XP_389685.1| hypothetical protein FG09509.1 [Gibberella zeae PH-1] Length = 1562 Score = 42.6 bits (98), Expect = 0.088, Method: Composition-based stats. Identities = 22/154 (14%), Positives = 48/154 (31%), Gaps = 3/154 (1%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P ++ + + ++V + + G GKTT A ++ T G S+ Sbjct: 1047 PTQYTMSDRDNLNVDQRRAIEKVMSAQDYALVLGMPGTGKTTTIAHII--QALTSQGKSV 1104 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + +++ T + N L S + +L ++ + ++ I + Sbjct: 1105 LLTSHTHTAVDNILLKLKSDKIPILRLGAPAKVHPQVQEFATLAGHPMKSFEEIKEAWHG 1164 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + H DEAS Sbjct: 1165 TPIVATTCLGINHP-IFHERTFDYCIVDEASQIT 1197 >gi|225568008|ref|ZP_03777033.1| hypothetical protein CLOHYLEM_04081 [Clostridium hylemonae DSM 15053] gi|225163182|gb|EEG75801.1| hypothetical protein CLOHYLEM_04081 [Clostridium hylemonae DSM 15053] Length = 895 Score = 42.6 bits (98), Expect = 0.088, Method: Composition-based stats. Identities = 24/199 (12%), Positives = 50/199 (25%), Gaps = 26/199 (13%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q + + + N K I A G GKTTL + R G + Sbjct: 15 RDYQERVLHHSEAYMSDN---------KVHIVAAPGSGKTTLG-----IELIRRLGNPCL 60 Query: 112 CIANSETQLKNTLWAEVS-----------KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 ++ S ++ A + KW S + + Sbjct: 61 ILSPSI-TIRQQWIARLEEGFLTEGEDAEKWFSNDIRKAKPITAITYQALYSSMKQYTGL 119 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220 + + + D + + DEA +++ F + Sbjct: 120 LEDSEEESEEKNTEMVDYKNFDIYEVIRENGIRTLCLDEAHHLRSEWWRALEEFLKNVTD 179 Query: 221 NRFWIMTSNTRRLNGWFYD 239 + +T+ + Sbjct: 180 VKLVSLTATPPYDSTPAQW 198 >gi|28210383|ref|NP_781327.1| DNA/RNA helicase [Clostridium tetani E88] gi|28202820|gb|AAO35264.1| DNA/RNA helicase [Clostridium tetani E88] Length = 830 Score = 42.6 bits (98), Expect = 0.088, Method: Composition-based stats. Identities = 23/190 (12%), Positives = 54/190 (28%), Gaps = 36/190 (18%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 + +P Q+E + + + + + A GIGKT L A + Sbjct: 216 SYPKPKDAQIEALYKLKKFREEGFD-------RGIVVAATGIGKTYLAA------FDSSK 262 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 ++ +A+ + L ++ + + + + + D Sbjct: 263 YNKVLFVAHRQEIL----------------NQAETSFRIVRKTNNTGFFSGNRKDRNKD- 305 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNRFWI 225 T +T +++ + DE D + F P Sbjct: 306 -VLFATVQTLGQKQYLCDDYFKEDEFDYIIIDEFHHAVADNYQNILDYF----KPKFLLG 360 Query: 226 MTSNTRRLNG 235 +T+ R++ Sbjct: 361 LTATPERMDN 370 >gi|269138982|ref|YP_003295683.1| putative large subunit terminase [Edwardsiella tarda EIB202] gi|267984643|gb|ACY84472.1| putative large subunit terminase [Edwardsiella tarda EIB202] Length = 237 Score = 42.6 bits (98), Expect = 0.089, Method: Composition-based stats. Identities = 22/218 (10%), Positives = 53/218 (24%), Gaps = 25/218 (11%) Query: 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCA---------ISAGRGIGKTTLNAWMMLWLIST 104 W+L+ + + V + I R +G +T +L Sbjct: 24 WRLDNLYQIVDEQGRLVPFRMRPAQRQLFMEMHEKNLILKARQLGFSTAIDLYLLDQALF 83 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 + +A + AE+ + +P H + H + + Sbjct: 84 SQNVKCGIVAQDKQAA-----AEIFRTKIEVPFDHLPGWLAGCFHAVKRHGGASGGYIEF 138 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224 + ++ + + P + G + Sbjct: 139 AHGSNIMVATSFRSGTVQRLHISEHGKI-------CAKYPAKAKEVRTGTLNAVADGSIV 191 Query: 225 IMTSNTRRLNGWFYDI----FNIPLEDWKRYQIDTRTV 258 + S + G FYD+ + ++ + R Sbjct: 192 FIESTAEGVGGDFYDMSLRAQEMAQSRFRCWIFPIRPS 229 >gi|331270547|ref|YP_004397039.1| DNA helicase [Clostridium botulinum BKT015925] gi|329127097|gb|AEB77042.1| DNA helicase, putative [Clostridium botulinum BKT015925] Length = 1222 Score = 42.6 bits (98), Expect = 0.090, Method: Composition-based stats. Identities = 16/118 (13%), Positives = 44/118 (37%), Gaps = 6/118 (5%) Query: 53 RWQ---LEFMEAV-DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108 +WQ + + ++ ++ S F + G GKT A ++ L++ Sbjct: 241 KWQDIGKDILYSLPYNKEQLSIGESIAQNFGVVVQGPPGTGKTYSIANLISHLLAHN--K 298 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 I+ + L+ + + S+ + + ++Q+LS + + + + + Sbjct: 299 RILITSTKYKSLEPLINMIPKEIRSLCINYNENKLQNLSQIYHSVISVIEKIQLNSEK 356 >gi|328793005|ref|XP_625192.3| PREDICTED: activating signal cointegrator 1 complex subunit 3-like [Apis mellifera] Length = 2076 Score = 42.6 bits (98), Expect = 0.090, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 45/175 (25%), Gaps = 21/175 (12%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L FS + Q + + + + A G GKT M + Sbjct: 1236 LYKFSHFNPIQTQIFHCLYHTDN-----------NVLLGAPTGSGKTIAAEIAMFRVFKQ 1284 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 P I+ IA + ++ + W + FE Q + + Sbjct: 1285 YPTQKIVYIAPLKALVRERM----KDW------KIRFEEQLGKKVIELTGDVSPDIKVIA 1334 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219 ++ T + + + + DE + + + N Sbjct: 1335 NANIIITTPEKWDGISRSWQTRLYVKNVALIIIDEIHLLGEDRGPVLEVIISRTN 1389 >gi|310642916|ref|YP_003947674.1| protein [Paenibacillus polymyxa SC2] gi|309247866|gb|ADO57433.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2] Length = 561 Score = 42.6 bits (98), Expect = 0.090, Method: Composition-based stats. Identities = 23/271 (8%), Positives = 68/271 (25%), Gaps = 40/271 (14%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q F+ V + + I R +G +T+ ++ + S + + +A Sbjct: 60 QRTFVREVFRQIEAGKPV------RIIILKARQMGFSTVTEALIYYFTSLQEAKNAFIVA 113 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI-TC 173 + + L+ + +P ++ +S + ++ + Sbjct: 114 -QSSDASSNLYDMFQFYYEKVP----AIIKPMSRKNNAKKLTFENPTIRTADRRMNPGLK 168 Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTP-----DIINKSILGFFTELNPNRFWIMTS 228 + + ++ V + + E + P + + E T+ Sbjct: 169 SKITVQTAESRVLARSDTIHYLHASEVAFWPAKKKKKHLLSLLAALSKEPGSLGVIESTA 228 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG-----------IDSGFHEGIISRYGLDS 277 N +D D+ + + + + Sbjct: 229 NGIEEFKKMWDAAVKGESDFTPLFFAWFEMPDYRKPVPPGFELTEEEWKLKEKYALDDEQ 288 Query: 278 DVAR------------IEILGQFPQQEVNNF 296 R + ++P + + F Sbjct: 289 LQWRRYTIRNDCGGDPRQFDQEYPSEPDDAF 319 >gi|294637622|ref|ZP_06715901.1| putative ATP-dependent RNA helicase [Edwardsiella tarda ATCC 23685] gi|291089177|gb|EFE21738.1| putative ATP-dependent RNA helicase [Edwardsiella tarda ATCC 23685] Length = 448 Score = 42.6 bits (98), Expect = 0.090, Method: Composition-based stats. Identities = 20/192 (10%), Positives = 46/192 (23%), Gaps = 18/192 (9%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 SA G GKT L + P I+ + + + L Sbjct: 47 SAPTGTGKTAAFLLPALQHLLDFPRKKSGPPRILILTPTRELAMQV-----ADQARELAR 101 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 ++ + +G + + + ++ + + Sbjct: 102 HTTLDITT----ITGGVSYINHAEIFSTNQDMV-VATPGRLLQYIKEENFDCRSVETLIL 156 Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257 DEA D+ + R + + + +D + LED + Sbjct: 157 DEADRMLDMGFAKDIETVAAETRWRKQTLLFSATLESDAVHDFADRLLEDPVDV---SAE 213 Query: 258 VEGIDSGFHEGI 269 + + Sbjct: 214 PPRRERKKIQQW 225 >gi|227535679|ref|ZP_03965728.1| possible bacteriophage terminase large subunit [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227186699|gb|EEI66766.1| possible bacteriophage terminase large subunit [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 570 Score = 42.6 bits (98), Expect = 0.090, Method: Composition-based stats. Identities = 35/292 (11%), Positives = 74/292 (25%), Gaps = 53/292 (18%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPG---MSIICIANSETQLKNTLWAEVSKWLSMLP 136 IS R GK+ L + ++L+ + A ++ + ++ V L L Sbjct: 100 VFISMARKNGKSLLISGVILYEFLFGKNPANKRQLYTAANDRKQAGIVFGMVKDRLRAL- 158 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 + D T DT Sbjct: 159 -------------MRKDPGIKRMVKITRDELVNLDDGSTIRSFSRDTG-LVDGYEPHVAV 204 Query: 197 NDEAS--GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL--------- 245 DE + T D+I G + F I T+ F + Sbjct: 205 VDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPMFQQNYPYAKKVLSGEEKA 264 Query: 246 EDWKRYQIDTRTVEGIDSG--FHEG---------------------IISRYGLDSDVARI 282 E + + + V+ +D + + +R + + Sbjct: 265 ERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLNGQISDYLTTKLAQARADGSLNAKLV 324 Query: 283 EILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334 + + Q ++++ + + A + D +G D+ D + Sbjct: 325 KNFNIWRQATEDSYLDFDAWKAAELTDKPDIRGQRAWIGIDVGRT-SDLFAI 375 >gi|188495109|ref|ZP_03002379.1| terminase [Escherichia coli 53638] gi|188490308|gb|EDU65411.1| terminase [Escherichia coli 53638] Length = 607 Score = 42.6 bits (98), Expect = 0.090, Method: Composition-based stats. Identities = 37/286 (12%), Positives = 78/286 (27%), Gaps = 31/286 (10%) Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 V +F+ I GR G T AW G + I + S+ Q Sbjct: 159 QQYVREHGDELFRF-ILKGRQEGFTYYFAWEGFEKAVLT-GKNQIFFSASKPQA------ 210 Query: 127 EVSKWLSMLPHRHWF--EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184 EV ++ + + +F E++ + S + ++ Y+ F Sbjct: 211 EVFRFYILSIAQQFFGVELKGNPIRLSNGAILRFLATNPNTAQSYSGDLYGDEVFWISKF 270 Query: 185 VGPHNTHGMAVFNDEA--------SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236 H +DE S + G + + + T + Sbjct: 271 ARLHEVASAMATHDEFRITYFSTPSTKTHQAYRLWTGDEWKGDDPKRKAAEFPTSKELRK 330 Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 + + + D E + +RY + + +F + Sbjct: 331 GGQVCPDGIWRYVITMEDACAKGLSARVNIEKLRNRYSATAFAML--YMCEF-TDSRDTV 387 Query: 297 IPHNYIEEA-----MSREAIDDLYAPL----IM-GCDIAGEGGDKT 332 + +E+ + ++ P + G D + G + T Sbjct: 388 FKFSDLEKCEVEFGIWQDFDPSALRPFGNREVWGGFDPSRTGDNST 433 >gi|332800741|emb|CBY88581.1| hypothetical protein [Pantoea phage LIMEzero] Length = 589 Score = 42.6 bits (98), Expect = 0.091, Method: Composition-based stats. Identities = 35/287 (12%), Positives = 73/287 (25%), Gaps = 42/287 (14%) Query: 8 DQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCH 67 D + ++ F F+ +F W G L E E + Sbjct: 2 DMLQRLQKAALIREHYLTAGFTKFLRDYFAW--LGYELT----------EMQEDIGKFM- 48 Query: 68 SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127 + + A RG K+T+ L+ PG +++ ++ S+ A Sbjct: 49 -----DDRDYPNKCVMAQRGEAKSTVGIARSLYEFIRNPGGTVLLVSGSDDYAGTLSHAI 103 Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187 VS + R + + + E + S + F Sbjct: 104 VSAIMQ--WDRLDWLKPESRMGARMSFTEGFDVHHSFRIPDKQP-----SVKAVGIFGQL 156 Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM--------TSNTRRLNGWFYD 239 H + D+ T + + + L I + + + Sbjct: 157 QGNHVSLLIADDVETTSNGSSPANRARIATLTKEFSAIANNGAEILYLGTPQTQDSIYN- 215 Query: 240 IFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 ++P + R E G + + ++ G Sbjct: 216 --SLPQRGFTVRIWPGRYPT------VEEEERYGGCLAPYIKQKLDG 254 >gi|189236459|ref|XP_973989.2| PREDICTED: similar to predicted protein [Tribolium castaneum] Length = 988 Score = 42.6 bits (98), Expect = 0.091, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 69/232 (29%), Gaps = 30/232 (12%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + + S +++A RG GK+ + + +I + Sbjct: 257 QGKALLKFIEAISEKTLRST-----VSLTAARGRGKSAAL-GLSVAAAVAFGYSNIFVTS 310 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 S L NT + V K L ++ + + + ++ ++ D + + Sbjct: 311 PSPENL-NTFFEFVFKGFDALEYQEHIDYSLVQSTNPEFNKAIVRVNIFRDHRQTIQYIQ 369 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 + + + DEA+ P KS+LG + F T N Sbjct: 370 PTDSQ--------RLSQAELLVIDEAAAIPLPYVKSMLGPYL-----VFLASTINGYEGT 416 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 G + + + + E I + G D + ++L Sbjct: 417 GRSLSLKLLQQLRIQA----------VPVTLDESIRYKPGDDVEAWLTKLLC 458 >gi|126015324|gb|ABN70693.1| terminase [Salmonella phage SETP13] Length = 223 Score = 42.6 bits (98), Expect = 0.091, Method: Composition-based stats. Identities = 25/199 (12%), Positives = 61/199 (30%), Gaps = 10/199 (5%) Query: 81 AISAGRGIGKTTLNAW-MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 A AG G GK+ + +L + I + ++ L + + LS R+ Sbjct: 23 AFVAGFGTGKSEVMCNSALLDSMEGGSDSLIAMYEPTYDLVRLILAPRMEEKLSDWGIRY 82 Query: 140 WFEMQSLSLH-PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + ++ SG + + + +++ ++ + DT H H Sbjct: 83 KYNKSDNIIYTSSGQFGDFVLRTLDNPARIVGYESFRAKIDELDTLNKDHAEHAWNKVIA 142 Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-DWKRYQIDTRT 257 P + I + T + +D + + + ++ Q T + Sbjct: 143 RNRQLP-RTYRPITP------KPANTVSVFTTPEGFRFVHDRWAVKKKPGYEMIQAATTS 195 Query: 258 VEGIDSGFHEGIISRYGLD 276 + + + + Y Sbjct: 196 NPFLPEDYVQSLRDTYPGQ 214 >gi|126465865|ref|YP_001040974.1| DNA topoisomerase type IA central domain-containing protein [Staphylothermus marinus F1] gi|126014688|gb|ABN70066.1| DNA topoisomerase, type IA, central domain protein [Staphylothermus marinus F1] Length = 1220 Score = 42.6 bits (98), Expect = 0.092, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 37/127 (29%), Gaps = 11/127 (8%) Query: 15 LHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV----HCHSNV 70 L + + +C N + + + LE F+ F +A Sbjct: 25 LWDFGVCGKCSDEPGNSINAVTLYHAFKEDLEDFTHF------FGKATGDLNPWGAQLTW 78 Query: 71 NNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK 130 I A G+GKTTL +++ ++ +A + K + Sbjct: 79 AKRLLNGENTVIVAPTGMGKTTLLIVYSVYVA-KNYNKKVLFLAPTRALAKQIYTRIIEA 137 Query: 131 WLSMLPH 137 ++ Sbjct: 138 VKNVCGT 144 >gi|260775987|ref|ZP_05884883.1| hypothetical protein VIC_001372 [Vibrio coralliilyticus ATCC BAA-450] gi|260608403|gb|EEX34572.1| hypothetical protein VIC_001372 [Vibrio coralliilyticus ATCC BAA-450] Length = 966 Score = 42.6 bits (98), Expect = 0.093, Method: Composition-based stats. Identities = 33/265 (12%), Positives = 74/265 (27%), Gaps = 15/265 (5%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ N + + I RG+GK+ L + +I+ G I Sbjct: 247 EWQQ------MTQVLRGENPTRQPVQCVHIQGDRGVGKSHLMHAVGEHVIAALSGRRITV 300 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 +A + + L + L++ E + E + +D+K T Sbjct: 301 MAREQVDSLSVLAKLLLSALALPGWASTSERSDAAQRIGLSINETERLLVLLDAKAMPRT 360 Query: 173 CRTYSEERPDTFVGPH----NTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 R T + D+A + I +++ ++ S Sbjct: 361 ERLALRVATTDAKLVRQVLSQTQVRVLVLDDAECVDGDSWQVIQRAMEQMSVPPRCLIAS 420 Query: 229 NTRRLNGWFYDIFNI-----PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283 + G+ PL + R S + + Sbjct: 421 DRPLPWGFSDRWHIQVHTLSPLTREDTTSLAQRWAPSAVSDVVLAQCVDICGGNPAFLRQ 480 Query: 284 ILGQFPQQEVNNFIPHNYIEEAMSR 308 ++ + P + ++++++ + R Sbjct: 481 LILEAPFEAEPLAPSYSFVDQQLER 505 >gi|333028964|ref|ZP_08457027.1| hypothetical protein STTU_p0001 [Streptomyces sp. Tu6071] gi|332742172|gb|EGJ72614.1| hypothetical protein STTU_p0001 [Streptomyces sp. Tu6071] Length = 911 Score = 42.6 bits (98), Expect = 0.094, Method: Composition-based stats. Identities = 41/332 (12%), Positives = 82/332 (24%), Gaps = 61/332 (18%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIF--KCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 + Q+E M + S T + + + G GKT A L L P Sbjct: 19 RKHQVELMSDLRKWVRVAARESARTERGARATVVSATGTGKTISAAAAALEL---FPSGR 75 Query: 110 IICIANSETQLKNT--LWAEVSKW----------LSMLPHRHWFEMQSLSLHPSGWYAEL 157 ++ + + L T W V +L + + + W Sbjct: 76 VLVMVPTLDLLVQTAQSWRAVGHTAPMVGVCSLPRDLLLEELRVRTTTHPIRLALWAGSG 135 Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGP---HNTHGMAVFNDEASGTPDIINKSILGF 214 + S + E G DEA Sbjct: 136 PVVVLATYSSLVGEDGQGGPLEAALAGAGLYGQRMDGFDLAVVDEAH------------- 182 Query: 215 FTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYG 274 T + + W + +++ + + Sbjct: 183 RTAGSAEKAWAAI--------------HDNARFPAAHRLYLTATPRVLAPARPARHEGEE 228 Query: 275 LDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI----------DDLYAPLIMGCD- 323 + + + P E +I + EA++R+ + D L+ G D Sbjct: 229 GRGEAPALVTMANDPAGEYGAWIHELGLSEAIARKIVAPFEIDVLEITDPEPELMEGLDR 288 Query: 324 IAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355 A G + + ++EH + + + Sbjct: 289 EARRGR---RLALLQTGLLEHAAEHNICTMMT 317 >gi|315652132|ref|ZP_07905130.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] gi|315485624|gb|EFU76008.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] Length = 1191 Score = 42.6 bits (98), Expect = 0.094, Method: Composition-based stats. Identities = 21/181 (11%), Positives = 53/181 (29%), Gaps = 11/181 (6%) Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG-MSIICIANSETQLKNT 123 + + ++ G+GKT A ++L + R S++ I + Sbjct: 273 QFRPALKMIKSDSPRILVADDVGVGKTI-EAGLILKEMEARSSLSSVLVICPRPLVAERK 331 Query: 124 LWAEVSKW---LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID--SKHYTITCRTYSE 178 E+ ++ + L R E + W + + ++ + ++ S Sbjct: 332 WQLEMKRFDENFTQLDGRTLAECIQETDRDGEWPERYSKTVIPYSLFNEDSILGTQSKSS 391 Query: 179 ERPDTFVGPHNT---HGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTSNTRRLN 234 ++ H + DEA + N + +T+ + + Sbjct: 392 KKHRNLGLAELDPIPHFDLLIVDEAHNIRNSNTWMYRGVELFCRNADAVVFLTATPLQNS 451 Query: 235 G 235 Sbjct: 452 N 452 >gi|32455538|ref|NP_862293.1| Ycg4A [Corynebacterium glutamicum] gi|9836705|gb|AAG00269.1|AF164956_1 Ycg4A [Corynebacterium glutamicum] Length = 716 Score = 42.6 bits (98), Expect = 0.094, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 52/187 (27%), Gaps = 28/187 (14%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 RWQ I G GKT + A +L + P I Sbjct: 196 DRWQKAAAIESPEGPQR-------------IRGLAGSGKTVVLALKAAYLHTQHPDWRIA 242 Query: 112 CIANS---ETQLKNTLWAEVSKWLSMLPHRHWFEMQSL-SLHPSGWYAELLEQSMGIDSK 167 +S Q+ + + + + P ++ ++ +++G + Sbjct: 243 LTFHSRSLYEQMDDLVTRFTFEHSNDQPDEEHLKIIHTWGSSSRPGVYSMIARALGEVPR 302 Query: 168 HYTITCRTYSEERP----------DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217 ++ TY + N AV DEA P + ++ FT+ Sbjct: 303 NWAYARATYGMDNAFQGICAELLSIAESKTINPIFDAVLIDEAQDLPPEFFR-LVYLFTK 361 Query: 218 LNPNRFW 224 W Sbjct: 362 HPKRIVW 368 >gi|315653149|ref|ZP_07906074.1| type III restriction-modification enzyme [Lactobacillus iners ATCC 55195] gi|315489514|gb|EFU79151.1| type III restriction-modification enzyme [Lactobacillus iners ATCC 55195] Length = 879 Score = 42.6 bits (98), Expect = 0.094, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 58/186 (31%), Gaps = 16/186 (8%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q E + + + N I A G GKT + A ++L+L + + Sbjct: 37 REYQKEAFQYFVTYFEKDGLRKNKQIHTLFHMA-TGSGKTVMMAGLILYLYTKGYRKFLF 95 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + + N L +L+ L ++ F + L ++ S + Sbjct: 96 FVNQT-----NILKKTEENFLNTLSSKYLFADELSYLGMKIKVKKVDRFSDIPFDDDIEL 150 Query: 172 TCRTYSEERPDTFVGPHN--------THGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223 T + D + N + + +DE+ K TE + + Sbjct: 151 LFTTTQKLHMDMWDAKENAPTCADFENDKIVLISDESHHINSNTKK--KKTSTEEDDEKS 208 Query: 224 WIMTSN 229 W T N Sbjct: 209 WEYTVN 214 >gi|195443932|ref|XP_002069642.1| GK11465 [Drosophila willistoni] gi|194165727|gb|EDW80628.1| GK11465 [Drosophila willistoni] Length = 2181 Score = 42.6 bits (98), Expect = 0.095, Method: Composition-based stats. Identities = 20/175 (11%), Positives = 42/175 (24%), Gaps = 20/175 (11%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L F+ + Q + + + + A G GKT + + ++ Sbjct: 1329 LYKFTHFNPIQTQIFHCLYHTDN-----------NVLLGAPTGSGKTIVAEIAIFRALNK 1377 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 P ++ IA + +K + ++ E+ E Sbjct: 1378 EPKSKVVYIAPLKALVKERIADWQQRFERSPLGLKVVELTGDVTPDIQAIRESQLIVTTP 1437 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219 + E H + DE + I + N Sbjct: 1438 EKWDGISRSWQTREYV---------QHVSLIVIDEIHLLGEDRGPVIEVIVSRTN 1483 >gi|306825919|ref|ZP_07459257.1| DNA endonuclease [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431851|gb|EFM34829.1| DNA endonuclease [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 913 Score = 42.6 bits (98), Expect = 0.096, Method: Composition-based stats. Identities = 22/173 (12%), Positives = 53/173 (30%), Gaps = 7/173 (4%) Query: 38 WGIKGKPLEHFSQ-PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96 W + +E+ P +Q E + + ++ + + G GKT L A Sbjct: 33 WELPQYIIENLKHEPRSYQSEAIRY-FHYTQASDTFKFRKPRQLMFNMATGSGKTDLMAG 91 Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156 ++L+L + + + N+ L T+ + + E+ + + Sbjct: 92 LILYLYKEKGYQNFLFTVNTNGVLSKTIDNLTNAQSTKFLFNSNLEIDGEHIFINQISGR 151 Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN-----THGMAVFNDEASGTP 204 + ++ +T + + + M + DEA Sbjct: 152 FPDFPNKNVINIKFVSIQTLTNDLFTQAENIMSLKDYQKTKMVILADEAHHYS 204 >gi|256811339|ref|YP_003128708.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus fervens AG86] gi|256794539|gb|ACV25208.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus fervens AG86] Length = 362 Score = 42.6 bits (98), Expect = 0.096, Method: Composition-based stats. Identities = 20/198 (10%), Positives = 44/198 (22%), Gaps = 25/198 (12%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 F +P Q++ V A G GKT A ++ LI Sbjct: 20 GFEKPTDIQMKV-----------VPLFLNESCNIVAQARTGSGKTASFAIPLIELIDEDS 68 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 G+ I + + + + L ++ + + + + Sbjct: 69 GIEAIILTPTRELAIQV-----ADEIDSLKGNKNLKIT------KVYGGKAIHPQIKALK 117 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFF--TELNPNRF 223 K + + + DEA + + N Sbjct: 118 KANIVVGTPGRVLDHINRGTLNLKNVKYFILDEADEMLNMGFIEDVEKILNACNKNKRIL 177 Query: 224 WIMTSNTRRLNGWFYDIF 241 + + + Sbjct: 178 LFSATMPKEILNLAKKYM 195 >gi|260817878|ref|XP_002603812.1| hypothetical protein BRAFLDRAFT_124682 [Branchiostoma floridae] gi|229289135|gb|EEN59823.1| hypothetical protein BRAFLDRAFT_124682 [Branchiostoma floridae] Length = 2137 Score = 42.6 bits (98), Expect = 0.096, Method: Composition-based stats. Identities = 23/188 (12%), Positives = 46/188 (24%), Gaps = 17/188 (9%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 I A G GKT + +L LIS P + + E+ + S W + Sbjct: 1344 NVFIGAPTGSGKTICGEFSVLRLISQNPEGRCVYVTPMESLAEQVY----SDWYAK---- 1395 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 F++Q + + T + + + D Sbjct: 1396 --FQVQLGKKVVMLTGETSTDLKLLAKGNIIISTPDRWDVLSRRWKQRKNVQNVNLFIVD 1453 Query: 199 EASGTPDIINKSIL-------GFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY 251 EA + +++ + S++ + Sbjct: 1454 EAHLIGGENGPVLEVICSRMRYIASQIERQIRIVALSSSLSNAKDIAQWLGATTNSTFNF 1513 Query: 252 QIDTRTVE 259 + R V Sbjct: 1514 HPNVRPVP 1521 >gi|284044842|ref|YP_003395182.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684] gi|283949063|gb|ADB51807.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM 14684] Length = 590 Score = 42.6 bits (98), Expect = 0.097, Method: Composition-based stats. Identities = 22/248 (8%), Positives = 49/248 (19%), Gaps = 30/248 (12%) Query: 22 AECVLSFKNFVMRFFPWGIKGKPLE-HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKC 80 ++ F + + +P Q E + Sbjct: 8 SDDASDTTTFADLALRRELLDALTGLGYEEPTPIQREAI------------PPLLEGRDL 55 Query: 81 AISAGRGIGKTTLNAWMMLWLISTRP---GMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 A G GKT A +L + G + + + A + ++ L Sbjct: 56 LGQAATGTGKTAAFALPILQRMEPGRSAIGPLALVLVPTRELAVQVSEA-LHRYGRSLGA 114 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 R + + + + V Sbjct: 115 RVLPIYGGQPIGRQLNALKR---------GVDVVVGTPGRVLDHISRNTLRLDELRIVVL 165 Query: 198 DEA-SGTPDIINKSILGFFT---ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253 DEA + I + + R++ + P+ + Sbjct: 166 DEADEMLDMGFAEDIESILAETPDGGRQTVLFSATMPPRIDRIARAHLSDPVRIEIARET 225 Query: 254 DTRTVEGI 261 + Sbjct: 226 SAGDTPLV 233 >gi|195400969|ref|XP_002059088.1| GJ15181 [Drosophila virilis] gi|194141740|gb|EDW58157.1| GJ15181 [Drosophila virilis] Length = 1010 Score = 42.6 bits (98), Expect = 0.097, Method: Composition-based stats. Identities = 28/207 (13%), Positives = 66/207 (31%), Gaps = 22/207 (10%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 +++A RG GK+ + + + +++ + L L+ + K L ++ Sbjct: 275 ISLTAARGRGKSA-AMGLAIAGAISFGYVNVYVTSPHPENLIT-LFEFILKGFDALEYQE 332 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + ++ ++ +S+ + + DE Sbjct: 333 HADYTIIRSTNPDFKKAIIRINITRNSRQTIQYIAPSDTHLLNAAD--------LLMIDE 384 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 A+ P L ++ M S +NG+ ++ L+ + Q D Sbjct: 385 AAAIP-------LPLVKKMIGPYLIFMAST---INGYEGTGRSLSLKLIAQIQKDNNAHP 434 Query: 260 GIDSGFHEGIISRYGLDSDVARIEILG 286 I E I + D + I +L Sbjct: 435 PITLE--ESIRYKPNDDIERWLINLLC 459 >gi|310658353|ref|YP_003936074.1| helicase [Clostridium sticklandii DSM 519] gi|308825131|emb|CBH21169.1| putative helicase [Clostridium sticklandii] Length = 1034 Score = 42.6 bits (98), Expect = 0.098, Method: Composition-based stats. Identities = 26/185 (14%), Positives = 65/185 (35%), Gaps = 28/185 (15%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P+ +Q E ++ +++ + + ++A G GKT ++A+ P + Sbjct: 315 PYAYQQEILDRLEI-----EREVYNSYYNLIVAA-TGTGKTMVSAFDFKNFYKDNPSAKL 368 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + +A+ E L ++ A + +L ++ E+ + PS + + Sbjct: 369 LFLAHREEILSQSVMA----FRGVLKDANFGELWVGNHRPSIFNHVFASIQTLNSN---- 420 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 + + + + DE+ T + I + + +T+ Sbjct: 421 -----------EQYKEFACDYFDYIVLDESHHTTASSYRKI---LSHFDSKIMLGLTATP 466 Query: 231 RRLNG 235 RL+G Sbjct: 467 ERLDG 471 >gi|28378987|ref|NP_785879.1| prophage Lp2 protein 35 [Lactobacillus plantarum WCFS1] gi|28271825|emb|CAD64730.1| prophage Lp2 protein 35 [Lactobacillus plantarum WCFS1] Length = 219 Score = 42.6 bits (98), Expect = 0.098, Method: Composition-based stats. Identities = 24/204 (11%), Positives = 60/204 (29%), Gaps = 17/204 (8%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 ++ I RG K+ A +++ + +I+ + + K + + E ++ Sbjct: 29 YRV-IKGSRGSKKSVTTAHNLIYRLVKYHWSNILVVRRNANTNKTSTFVECKNAINDFHL 87 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 +F+ + I R + T V ++ Sbjct: 88 ERYFKYNES------------LPEITYLPTGQKIIFRGLDDPLKLTSVNVLTGELCWLWV 135 Query: 198 DEASGT-PDIINKSILGFFTELNPNRF--WIMTSNTRRLNGWF-YDIFNIPLEDWKRYQI 253 +EA ++++ +P F +T N + W + F+ +D Sbjct: 136 EEAYEIESFSKLQTVIESLRGNDPQVFYQVTLTFNPWNEHHWLKREFFDQKRDDAFVRTT 195 Query: 254 DTRTVEGIDSGFHEGIISRYGLDS 277 R E + + + + Sbjct: 196 TVRCNEFVSDEYKQRLYRFIPNQP 219 >gi|115656178|ref|XP_001203626.1| PREDICTED: similar to DEAD/H box polypeptide RIG-I [Strongylocentrotus purpuratus] gi|115681731|ref|XP_001184982.1| PREDICTED: similar to DEAD/H box polypeptide RIG-I [Strongylocentrotus purpuratus] Length = 303 Score = 42.6 bits (98), Expect = 0.099, Method: Composition-based stats. Identities = 17/161 (10%), Positives = 34/161 (21%), Gaps = 30/161 (18%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI-------STRPG 107 Q + + H + + I A G GKT A + + Sbjct: 3 QRKRLR----HYQEELAVPGLNGYNYIICAPTGSGKTMTAASLCHRRMVELQKQGERFKA 58 Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHR-HWFEMQSLSLHPSGWYAELLEQSMGIDS 166 I+ + + Q ++ W ++ + F + + Sbjct: 59 TFIVPTRHLKGQQRDAFWDIFKPTSAVAVTKTSQFRRTFDDPRVNVLMITAQILVNALHH 118 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207 H + DE T Sbjct: 119 GH------------------FRFEELSMLVFDECHHTTQKH 141 >gi|260061160|ref|YP_003194240.1| hypothetical protein RB2501_06165 [Robiginitalea biformata HTCC2501] gi|88785292|gb|EAR16461.1| hypothetical protein RB2501_06165 [Robiginitalea biformata HTCC2501] Length = 1119 Score = 42.6 bits (98), Expect = 0.099, Method: Composition-based stats. Identities = 25/192 (13%), Positives = 58/192 (30%), Gaps = 19/192 (9%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 + +E + + ++ P + G GK+ + +++ L G +I A Sbjct: 723 EDILEYTFDYVNKLDHSYLP------VQGPPGSGKSFTGSQLIVRLAQQ--GKTIGITAL 774 Query: 116 SETQLKNTLWAEVSKWLSM-LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 S ++N L M R ++ S + P+ W E + + Sbjct: 775 SHKVIRNLLTKVWEVAQEMDFDIRMIQKVNSSNQEPAPWTLASNEDDIQNAFGTANVIAG 834 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 T P+ +F DEA ++ + ++ + ++L Sbjct: 835 TSFMW----CKSPYEGRLDYLFIDEAGQLS------LIDTLAVAHSCSNLVLLGDPQQLK 884 Query: 235 GWFYDIFNIPLE 246 + + Sbjct: 885 QPQQGVHPDGTD 896 >gi|307940746|gb|ADN95987.1| polyprotein [Chionodraco hamatus] Length = 2968 Score = 42.6 bits (98), Expect = 0.10, Method: Composition-based stats. Identities = 22/170 (12%), Positives = 42/170 (24%), Gaps = 39/170 (22%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM------MLWLISTRPGM 108 Q+ + C ++ NP F I+ G G GK+ L + +L + P Sbjct: 2284 QMSIFYQIRQWCLDKISGKNPDPFHVFITGGAGTGKSHLIKALQYETTRLLSPLCDHPDS 2343 Query: 109 S-IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 ++ A + + + + Sbjct: 2344 VCVLLTAPTG--------------------------------IAAYNLDAATIHNTFSIG 2371 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217 + T E + + V DE S + I G + Sbjct: 2372 VNSKLPYTPLGEEKINSLRAKYRNVQIVIVDEISMVDHKLMAYIHGRLRQ 2421 >gi|300214695|gb|ADJ79111.1| DNA/RNA helicase, DEAD/DEAH box family [Lactobacillus salivarius CECT 5713] Length = 986 Score = 42.6 bits (98), Expect = 0.10, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 62/195 (31%), Gaps = 31/195 (15%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 + +P++ Q E ++ + K I + G GKT L A + Sbjct: 210 EDNSNYSIIKPNKMQKEALKNL-------QKLRLLRETKGLIISATGTGKTYLAALDV-- 260 Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 + +A+ E LK +L + +L LS + Sbjct: 261 --KNYNPKRFLFVAHREQILKKSL----DSFHKVLGGDKKTNYGILSGNTK--------- 305 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220 D+K+ T +T S+ + + DEA I +L +FT P Sbjct: 306 --NTDAKYLFATVQTLSK--AENLNQFKRDEFDYILIDEAHHVGSKIYGKLLDYFT---P 358 Query: 221 NRFWIMTSNTRRLNG 235 + MT+ R + Sbjct: 359 DFLLGMTATPERSDD 373 >gi|195109152|ref|XP_001999154.1| GI23225 [Drosophila mojavensis] gi|193915748|gb|EDW14615.1| GI23225 [Drosophila mojavensis] Length = 2178 Score = 42.6 bits (98), Expect = 0.10, Method: Composition-based stats. Identities = 21/175 (12%), Positives = 43/175 (24%), Gaps = 20/175 (11%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L FS + Q + + + + A G GKT + + ++ Sbjct: 1327 LYKFSHFNPIQTQIFHCLYHTDN-----------NVLLGAPTGSGKTIVAEIAIFRALNL 1375 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 +P ++ IA + +K + ++ E+ E Sbjct: 1376 QPKSKVVYIAPLKALVKERIADWQQRFERSPLGLKVVELTGDVTPDIQAIRESQLIVTTP 1435 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219 + E H + DE + I + N Sbjct: 1436 EKWDGISRSWQTREYV---------QHVSLIVIDEIHLLGEDRGPVIEVIVSRTN 1481 >gi|119487419|ref|XP_001262502.1| DEAD/DEAH box helicase, putative [Neosartorya fischeri NRRL 181] gi|119410659|gb|EAW20605.1| DEAD/DEAH box helicase, putative [Neosartorya fischeri NRRL 181] Length = 2003 Score = 42.6 bits (98), Expect = 0.10, Method: Composition-based stats. Identities = 14/123 (11%), Positives = 32/123 (26%), Gaps = 10/123 (8%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + G GKT M W +PG ++ IA + ++ + + + + Sbjct: 1160 NVLLGSPTGSGKTVACELAMWWAFREKPGSKVVYIAPMKALVRERVMDWGKRLTGPMGLK 1219 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 E+ + + + + + V D Sbjct: 1220 -LVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRDYV---------RKVSLVIID 1269 Query: 199 EAS 201 E Sbjct: 1270 EIH 1272 >gi|194015756|ref|ZP_03054372.1| phage terminase, large subunit, pbsx family [Bacillus pumilus ATCC 7061] gi|194013160|gb|EDW22726.1| phage terminase, large subunit, pbsx family [Bacillus pumilus ATCC 7061] Length = 438 Score = 42.6 bits (98), Expect = 0.10, Method: Composition-based stats. Identities = 28/227 (12%), Positives = 62/227 (27%), Gaps = 38/227 (16%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + G G K+ + L L + + I +++ ++ + ++ L H Sbjct: 27 LVGGYGSSKSYHI-ALKLILKLLDEKRTALVIREVYDTHRDSTFSLFEEIVNDLGLDHVI 85 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + ++ L + I + ++ +E S Sbjct: 86 QCRTSPLML------------KFHNGSRIIFKGLDKPA-----KLKSINNISIIWIEECS 128 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-------------------- 241 K +LG + I+++N + W Y F Sbjct: 129 EVKYEGFKELLGRLRHPTLDLHMILSTNPVGQDNWTYRHFFKDDQNNRFILDDERLYKER 188 Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 I + D + + + + + D D+ RI G F Sbjct: 189 TIAINDTYYHHSTAEDNLFLPVSYIKQLDELKEYDPDLYRIARKGHF 235 >gi|38233611|ref|NP_939378.1| putative helicase [Corynebacterium diphtheriae NCTC 13129] gi|38199871|emb|CAE49537.1| Putative helicase [Corynebacterium diphtheriae] Length = 1043 Score = 42.6 bits (98), Expect = 0.10, Method: Composition-based stats. Identities = 28/188 (14%), Positives = 53/188 (28%), Gaps = 34/188 (18%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA---WMMLWLISTRPG 107 P+ +Q + +E++ + + A G GKT + A M + RP Sbjct: 315 PYPYQQDMLESLQA------EREQHNRHRNLLVAATGTGKTVVAALDYRSMCDALGRRP- 367 Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 ++ IA+ K L + + +L ++ E+ + P W Sbjct: 368 -RLLFIAHR----KEILQQALRTFREVLSDGNFGELLVDGVLPKEWTH------------ 410 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227 + H + DE S P +T Sbjct: 411 ----VFASIQSLNTSRMEALGKDHFEFIIIDEFH---HAQAISYRKVMDYFEPQELLGLT 463 Query: 228 SNTRRLNG 235 + R +G Sbjct: 464 ATPERGDG 471 >gi|156545481|ref|XP_001606961.1| PREDICTED: similar to CG2990-PB [Nasonia vitripennis] Length = 1191 Score = 42.6 bits (98), Expect = 0.10, Method: Composition-based stats. Identities = 17/180 (9%), Positives = 45/180 (25%), Gaps = 18/180 (10%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 + + ++ H + + I G GKT ++ + + S++ A+ Sbjct: 758 EDIFKKINEHQKQAILQALRADNYLLIKGFPGTGKTQTLVALI--ELLLKLDKSVLITAH 815 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 + T + N L + F + + E + + Sbjct: 816 TNTAVDNILLKLI----ERKIDFIRFGNSTKTHPNIAPMLEANVTEHCDSPESLHTVYCS 871 Query: 176 YSEERPDTFVGPHN----THGMAVFNDEASGTPDIINKSILGFFTEL-NPNRFWIMTSNT 230 + H DE++ + + +I+ + Sbjct: 872 KKVVGVTCYGATHAHLSRRKFDICIVDEST-------QVLQPTLLRPLYSASKFILVGDP 924 >gi|171741951|ref|ZP_02917758.1| hypothetical protein BIFDEN_01054 [Bifidobacterium dentium ATCC 27678] gi|283456905|ref|YP_003361469.1| helicase [Bifidobacterium dentium Bd1] gi|171277565|gb|EDT45226.1| hypothetical protein BIFDEN_01054 [Bifidobacterium dentium ATCC 27678] gi|283103539|gb|ADB10645.1| Helicase [Bifidobacterium dentium Bd1] Length = 691 Score = 42.6 bits (98), Expect = 0.10, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 48/167 (28%), Gaps = 26/167 (15%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +P +Q E ++A+ + A+ A G GKT + + L PG + Sbjct: 163 EPRDYQREAIDAIKTELKDHD-------RALAVMAC-GTGKTLTSLRLSEELC---PGGT 211 Query: 110 IICIANSETQLKNTLWAEVSKWLSM------------LPHRHWFEMQSLSLHPSGWYAEL 157 ++ +A S + + T+ V + ++ LS P Sbjct: 212 VLFLAPSISLVSQTMRGWVDQVRGRINPYVVCSDGKASKLKNDESYGQLSDIPYPATTNA 271 Query: 158 LEQSMGIDSKH---YTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + + + S + + DEA Sbjct: 272 DTIASRFHKRDDALNVVFSTYQSIDVVARAQQLGLPDFDLIVCDEAH 318 >gi|322503893|emb|CBZ38979.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 1285 Score = 42.6 bits (98), Expect = 0.10, Method: Composition-based stats. Identities = 31/243 (12%), Positives = 64/243 (26%), Gaps = 24/243 (9%) Query: 43 KPLEHFSQP-HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101 E +P +Q + + +N+N G+GKT ++ + Sbjct: 255 LDTEGGQRPLRHYQRSALRWMVHLYENNLNGILADEM--------GLGKTVQTIALLCYF 306 Query: 102 ISTRPGMSI-ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 + + + L AE+ +W L + + Sbjct: 307 AEYHNDWGPHLIVVPTTVVLN--WKAELERWSPGLKVLTYIGSTKERHLLRKGWT----- 359 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220 S+ C T + DEA + +L Sbjct: 360 -----SEDAFHVCVTSYNLVVQDRKAFRRRPWGFLVLDEAHHVKN-FMSLKWQSLFDLQA 413 Query: 221 NRFWIMTSNT-RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279 ++T + + +F+ L ++ + E + E I R L+ D+ Sbjct: 414 EYRLLLTGTPLQNSIMELWSLFHFLLPFASAFRSNAEFKEWFSNPMDEMITGRSTLNEDI 473 Query: 280 ARI 282 R Sbjct: 474 VRR 476 >gi|290985850|ref|XP_002675638.1| predicted protein [Naegleria gruberi] gi|284089235|gb|EFC42894.1| predicted protein [Naegleria gruberi] Length = 920 Score = 42.6 bits (98), Expect = 0.10, Method: Composition-based stats. Identities = 23/235 (9%), Positives = 64/235 (27%), Gaps = 31/235 (13%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 ++Q + E V + + G+GKT + + +M P II Sbjct: 154 RKYQFKICEKV-------------LLTNTLVCLPTGLGKTFIASVVMYNYYRWFPIGKII 200 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 +A++ + + + + +++ + ++ +G + + + + Sbjct: 201 FLAHTISLVDQQM----NACYNIMGI-----PEEETVVLTGRISPDERVDLWKTKRVFFC 251 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP-DIINKSILGFFTELNPNRFWIMTSNT 230 T ++ + V DEA + + + N + + S T Sbjct: 252 TPECVEKDLETGSCPAR--QVVLVVFDEAHKASGNHAYCVVTKLIGKKNDHWRVLGLSAT 309 Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285 + +I V + + + + Sbjct: 310 PGKT------HADIQKVITNLRISHVEVRDESDKDVAEYLHEKETKTIICNRDRD 358 >gi|255020480|ref|ZP_05292545.1| Exodeoxyribonuclease V alpha chain [Acidithiobacillus caldus ATCC 51756] gi|254970090|gb|EET27587.1| Exodeoxyribonuclease V alpha chain [Acidithiobacillus caldus ATCC 51756] Length = 654 Score = 42.6 bits (98), Expect = 0.10, Method: Composition-based stats. Identities = 19/166 (11%), Positives = 37/166 (22%), Gaps = 20/166 (12%) Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 I+ G G GKT A +++ L+ P + A + Sbjct: 189 QRLACALAAERGFTLITGGPGSGKTYTIARLLVLLMQAAP-RRVALAAPTGKAALRM--- 244 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 QS+ +L + + Sbjct: 245 ------------DTALRQSVDDFVRRGDDDLADLLRQVPPAQTLHRLLGARPGTRRLRHD 292 Query: 187 PHNT-HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 H + + DEAS + ++ I+ + Sbjct: 293 AHRPLNFDLLVVDEASMIQHDLMAAL---LRATPARSQLILLGDPD 335 >gi|254454372|ref|ZP_05067809.1| phage DNA Packaging Protein [Octadecabacter antarcticus 238] gi|198268778|gb|EDY93048.1| phage DNA Packaging Protein [Octadecabacter antarcticus 238] Length = 163 Score = 42.6 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 21/165 (12%), Positives = 42/165 (25%), Gaps = 28/165 (16%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI-SAGRGIGKTTLNAWMMLWLIS 103 L S P QL+ + + + + ++ I GRG GKT +A + ++ Sbjct: 20 LRGLSGP---QLKALPYLFEIWALDHQLAPEGDWRTWIILGGRGAGKTRASAEWVRSMVE 76 Query: 104 TRPG------MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 + I + Q + + S L+ P + Sbjct: 77 GSRPRDPGMARHVGLIGETMEQAREVMVFGASGILACSPPDRRPQW-------------- 122 Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 + + V+ DE + Sbjct: 123 ----ILGRNLLVWPNGAEARLYSAFDPERLRGPQFDEVWADELAK 163 >gi|154420635|ref|XP_001583332.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3] gi|121917573|gb|EAY22346.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3] Length = 449 Score = 42.6 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 31/245 (12%), Positives = 64/245 (26%), Gaps = 26/245 (10%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR- 105 +F+ P + Q E + + S I AI+ G GK+ ++ + T Sbjct: 26 NFTNPTKVQAETIPKI---------LSGQDICATAIT---GSGKSMAFLIPIVQKLLTFR 73 Query: 106 --PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163 PG + ++ + E+++ L + S G ++ ++ + Sbjct: 74 GLPGPKALIMSPT---------RELAQQLKAVCDMLAAHCAITSTLVIGGVSDEEQRELL 124 Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE--LNPN 221 + I + H DEA +S L + Sbjct: 125 TPAPDIIIGTPGRFIDSIFNAKVLKLEHLQFFVLDEADRLLGKGFESQLNTIVSQLPEKH 184 Query: 222 RFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR 281 + + T+ + I F + L VA Sbjct: 185 QTLLFTATLNDQVAKLATKIQKKSSEKISINPYMELNPNITQMFIKTKKEERRLPYLVAL 244 Query: 282 IEILG 286 + Sbjct: 245 CRNMC 249 >gi|71004784|ref|XP_757058.1| hypothetical protein UM00911.1 [Ustilago maydis 521] gi|46096862|gb|EAK82095.1| hypothetical protein UM00911.1 [Ustilago maydis 521] Length = 1490 Score = 42.6 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 30/210 (14%), Positives = 69/210 (32%), Gaps = 15/210 (7%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + G+GKT + A ++L P I+ +A + V + + Sbjct: 296 NVLAALPTGLGKTFIAAVVILNFFRWYPDGKILFLAPTR--------PLVDQQKTACHRI 347 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 ++ +G A + + +T +T+ + + P + V D Sbjct: 348 CGLPWDC-AIDLTGNTAGSRRGDYWATKRIFYMTPQTFENDLREKRCDPR--DIVCVVID 404 Query: 199 EASGTPDII-NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF--NIPLEDWKRYQIDT 255 EA +++G E+NP+ + S T + + + + + Sbjct: 405 EAHKARGKYAYGNVIGRIMEVNPHFRVLALSATPGKDSESVQEVVDQLHINQIEIRTEEA 464 Query: 256 RTVEGIDSGFHEGIISRY-GLDSDVARIEI 284 V+ E I++ G D ++ + + Sbjct: 465 IDVQRYMFRKREEIVNVTLGKDLNLVKEKW 494 >gi|301607559|ref|XP_002933375.1| PREDICTED: probable ATP-dependent RNA helicase DDX60-like [Xenopus (Silurana) tropicalis] Length = 1523 Score = 42.6 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 24/201 (11%), Positives = 58/201 (28%), Gaps = 27/201 (13%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P WQ + ++ VD + + I A GKT + + M ++S + Sbjct: 644 PDTWQRKLLDVVDNNESA------------VIVAPTSSGKTYASYYCMQKVLSQGHEGVV 691 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + ++ ++ + + ++++ LP+ + + + ++ Sbjct: 692 VYVSPTKALVNQVVTTVINQFNKNLPNGVALCGVFTRDYRTDALNSQILVTV-----PNC 746 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEAS----GTPDIINKSILGFFTELNPNRFWIM 226 + S R + V DE + + +L Sbjct: 747 LEILLLSPHRQEWAKRIK-----YVIFDEIHCLGGEIGAEVWEHLLVMIRCP-FLALSAT 800 Query: 227 TSNTRRLNGWFYDIFNIPLED 247 SN L W + + Sbjct: 801 ISNPEHLTEWLQSVKHYWERR 821 >gi|217077055|ref|YP_002334771.1| ATP-dependent RNA helicase [Thermosipho africanus TCF52B] gi|217036908|gb|ACJ75430.1| ATP-dependent RNA helicase [Thermosipho africanus TCF52B] Length = 516 Score = 42.6 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 34/313 (10%), Positives = 77/313 (24%), Gaps = 50/313 (15%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 F P Q + + + + A G GKT ++ L+ + Sbjct: 20 GFENPTPVQEKVIPTL-----------LKKEKNLIVQAKTGTGKTAAFGIPLIELLENKG 68 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 + I + + E++ L + P + Q + Sbjct: 69 YVQAIILTPTRELALQVS-EEINSLKRK----------KLKILPIYGGQSIQRQIDHLRK 117 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFF--TELNPNRF 223 + + DEA + T + Sbjct: 118 GVDIVVGTPGRILDHLERGTIDLSKVDYFILDEADEMLDMGFIDDVEKILKSTSDDKFFL 177 Query: 224 WIMTSNTRRLNGWF------YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277 + +R+ Y++ I + + +E +S E + ++ Sbjct: 178 MFSATIPKRIIDLAKKYIKNYEVIKIQDKQLTTNLTEQIYIELRESDKFEALCRIIDMEE 237 Query: 278 DVA-----RIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL-----------IMG 321 + R ++ + I Y EA+ + + ++ Sbjct: 238 EFYGMVFCRTKVE---VDTVSSKLIERGYDAEALHGDFSQYQRERVLKKFREKKVNILVA 294 Query: 322 CDIAGEGGDKTVV 334 D+A G D T + Sbjct: 295 TDVAARGIDITGL 307 >gi|195391276|ref|XP_002054289.1| GJ22884 [Drosophila virilis] gi|194152375|gb|EDW67809.1| GJ22884 [Drosophila virilis] Length = 2179 Score = 42.6 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 20/175 (11%), Positives = 43/175 (24%), Gaps = 20/175 (11%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L F+ + Q + + + + A G GKT + + ++ Sbjct: 1329 LYKFTHFNPIQTQIFHCLYHTDN-----------NVLLGAPTGSGKTIVAEIAIFRALNL 1377 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 +P ++ IA + +K + ++ E+ E Sbjct: 1378 QPKCKVVYIAPLKALVKERIADWQQRFERSSLGLKVVELTGDVTPDIQAIRESQLIVTTP 1437 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219 + E H + DE + I + N Sbjct: 1438 EKWDGISRSWQTREYV---------QHVALIVIDEIHLLGEDRGPVIEVIVSRTN 1483 >gi|50308703|ref|XP_454355.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|74690158|sp|Q6CNY4|INO80_KLULA RecName: Full=Putative DNA helicase INO80 gi|49643490|emb|CAG99442.1| KLLA0E08999p [Kluyveromyces lactis] Length = 1489 Score = 42.6 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 57/234 (24%), Gaps = 25/234 (10%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 +QL+ + + +N G+GKT + + +L ++ R + Sbjct: 748 EYQLKGLNWLANLYDQGINGILADEM--------GLGKT-VQSISVLAHLADRYNIWGPF 798 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 I + + E+S+++ ++ + + + + Sbjct: 799 IVVTPASTLHNWVNEISRFVPQFKILPYWGNANDRKTLRKF---WDRKHLRYGRDAPFHV 855 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232 T + + DEA S + ++T Sbjct: 856 MVTSYQMVVSDASYLQKMKWQYMILDEAQAIKSSQ-SSRWKTLLSFHCRNRLLLTGTP-- 912 Query: 233 LNGWFYDIFNIPLEDW---KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283 I N E W S + I + + E Sbjct: 913 -------IQNNMQELWALLHFIMPSLFDSHDEFSDWFSKDIESHAESNTELNQE 959 >gi|328849595|gb|EGF98772.1| hypothetical protein MELLADRAFT_79606 [Melampsora larici-populina 98AG31] Length = 1540 Score = 42.6 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 24/168 (14%), Positives = 39/168 (23%), Gaps = 23/168 (13%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L P +Q E +E I A G GKT + +M W+ Sbjct: 24 LSGNKCPRLYQEELLEE-------------AKRRNIIIRADTGTGKTLVAVLLMDWMAVQ 70 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH---WFEMQSLSLHPSGWYAELLEQS 161 G Q + + + + L P W E Sbjct: 71 PKGDD----QEHTIQAFLVPTRPLVQQQASAIRSGTTLRVREYTGDLQPELWNVEKWHSD 126 Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209 + T + + + F + + DEA Sbjct: 127 LKQTD-VIVCTAQIFYDILSKGFWTL--ENVSLLVFDEAHHCRKNHIY 171 >gi|305662656|ref|YP_003858944.1| DNA topoisomerase (ATP-hydrolyzing) [Ignisphaera aggregans DSM 17230] gi|304377225|gb|ADM27064.1| DNA topoisomerase (ATP-hydrolyzing) [Ignisphaera aggregans DSM 17230] Length = 1228 Score = 42.6 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 39/132 (29%), Gaps = 3/132 (2%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 A+ A GIGK+TL L+ I I + K ++ + H Sbjct: 82 AMVAPTGIGKSTLLGVYALYRAY-FYRSKIYIITPTREIAKQFYSKISEYLRTISKNFHG 140 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + L + ++ + + + +++ T S V ++ V D+ Sbjct: 141 AD--KLRIIFYDSSSKNHKDILKLINENMFDILITSSSFLSRHHVIVDSSKIDIVIADDL 198 Query: 201 SGTPDIINKSIL 212 Sbjct: 199 DSIMRNSKSVDR 210 >gi|288917812|ref|ZP_06412173.1| type III restriction protein res subunit [Frankia sp. EUN1f] gi|288350740|gb|EFC84956.1| type III restriction protein res subunit [Frankia sp. EUN1f] Length = 557 Score = 42.6 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 26/189 (13%), Positives = 51/189 (26%), Gaps = 40/189 (21%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q E + V + + A G+GKT + ++ +S I+ Sbjct: 143 RPYQSEAFQRVTDALDEHQ-------RALLVLA-TGLGKTVIGGEVIARHLSRHAAGRIL 194 Query: 112 CIANSE---TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 +A+++ QL+ LW +SK L Sbjct: 195 VVAHTKELVEQLERALWFHISKGTRTQLLTGDHRPDDLR-------------------GI 235 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI-INKSILGFFTELNPNRFWIMT 227 T + V DEA + +L ++ +T Sbjct: 236 TCATVFSALSYVRS------GYRPDLVVVDEAHHVAENGYFAELLDLLSD---VPQLGVT 286 Query: 228 SNTRRLNGW 236 + R + + Sbjct: 287 ATPWRGDRY 295 >gi|239787345|emb|CAX83822.1| uncharcterized ATPase [uncultured bacterium] Length = 379 Score = 42.6 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 19/168 (11%), Positives = 39/168 (23%), Gaps = 16/168 (9%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 IS R GKTT + A ++ Q K + A + L +P Sbjct: 18 ILISGPRQSGKTTFAKNLFHEFEYLNYDAQNDRHAITKMQWKRNVQAVLFDELHKMPEWK 77 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + E + + + + + + E Sbjct: 78 RWLK-------GIYDTEGNKPHIIVTGSANLEIFKKAGDSLAGRYFRFRMHPIDLK---E 127 Query: 200 AS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246 A D + + T ++ + L+ Sbjct: 128 ARLYWKDDVQEIFNRLMTVGGFPEPFL-----EGKTNFHRRWQKSHLD 170 >gi|198274912|ref|ZP_03207444.1| hypothetical protein BACPLE_01071 [Bacteroides plebeius DSM 17135] gi|198272359|gb|EDY96628.1| hypothetical protein BACPLE_01071 [Bacteroides plebeius DSM 17135] Length = 1039 Score = 42.6 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 57/185 (30%), Gaps = 27/185 (14%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG----MSI 110 Q + ++ + V F+ + A G GKT ++A+ + G I Sbjct: 314 QKQILDKL------KVEREECGNFRNLVVAATGTGKTVISAFDYQSFCQQQTGVGRTSRI 367 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + A+ E L+ +L S W ++ D H Sbjct: 368 LFTAHREEILRQSLHTYRSVLQDANFGTLWVGNEA--------------PQTEADYAHLF 413 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 ++ ++ F + + DEA S F+ +P +T+ Sbjct: 414 VSISMFNSRFEALFSQLPADYYDYIVIDEAH---HSQADSYRKLFSHFHPQLLIGLTATP 470 Query: 231 RRLNG 235 R++G Sbjct: 471 ERMDG 475 >gi|94263238|ref|ZP_01287055.1| Helicase-like:Peptidase S24, S26A and S26B:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase-like [delta proteobacterium MLMS-1] gi|93456456|gb|EAT06576.1| Helicase-like:Peptidase S24, S26A and S26B:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase-like [delta proteobacterium MLMS-1] Length = 1196 Score = 42.6 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 26/201 (12%), Positives = 45/201 (22%), Gaps = 34/201 (16%) Query: 34 RFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93 P E +P Q E + A G+GKT L Sbjct: 394 HALPISPGSDEQEAPPEPTELQKE------ALAALAATRREGYRRGLVVMA-TGLGKTWL 446 Query: 94 NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153 A + ++ +A+ E L+ + L Sbjct: 447 AA----FDAGHCTARRVLFVAHREEILQQAA--------------------ATFLRIRPR 482 Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213 D++ + + R + H V DE + Sbjct: 483 ARAGFYLGRQRDAEVDLLFASIQTLARSEHLARFAADHFDYVVVDEFH---HAAAATYRR 539 Query: 214 FFTELNPNRFWIMTSNTRRLN 234 NP +T+ R + Sbjct: 540 LLRHFNPRFLLGLTATPERTD 560 >gi|270291373|ref|ZP_06197595.1| phage terminase, large subunit [Pediococcus acidilactici 7_4] gi|270280219|gb|EFA26055.1| phage terminase, large subunit [Pediococcus acidilactici 7_4] Length = 386 Score = 42.6 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 33/254 (12%), Positives = 74/254 (29%), Gaps = 22/254 (8%) Query: 44 PLEHFSQPHR---WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 P +P + WQ +F+ A+ + ++ + +++ RG GKT L A + + Sbjct: 88 PNVDTGEPTKLMLWQ-KFIMAMLIGWRNDDGGKRFSRAIVSVA--RGQGKTYLMAIITAY 144 Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLS--MLPHRHWFEMQSLSLHPSGWYAELL 158 + ++N + + + + + SK L ++ + + Sbjct: 145 SFLIE----SLGLSNQDYLVSSINYKQTSKILGYIKSMLAKIATIEPFKSLIADSGLDTR 200 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFT 216 S D + + + H DE I+K + G Sbjct: 201 TLSSQSDQVVMSSNNNKLRAISHEAGQYD-SFHFTTAIFDEIGEIKTRQKISKIVSGQVK 259 Query: 217 ELNPNRFWIMTSNTRRLNGWFYDIFNIPL-------EDWKRYQIDTRTVEGIDSGFHEGI 269 N I T+ + D I D Y + + ++ + + Sbjct: 260 VRNKQFIQISTAYPDPTVPFHDDERMIQQAMEQDYLRDADTYLGLIWSQDNLNETYKPDM 319 Query: 270 ISRYGLDSDVARIE 283 + D+ Sbjct: 320 WVKSNPLLDLPNQR 333 >gi|227498391|ref|ZP_03928541.1| type III restriction system protein res subunit [Acidaminococcus sp. D21] gi|226903853|gb|EEH89771.1| type III restriction system protein res subunit [Acidaminococcus sp. D21] Length = 1063 Score = 42.6 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 22/186 (11%), Positives = 57/186 (30%), Gaps = 29/186 (15%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW-MMLWLISTRPGMS 109 P+ +Q + ++A+ + + A G GKT + A+ + + Sbjct: 326 PYPYQEQILDALQA------ERQIHHRTRNLVVAATGTGKTAIAAFDYARFAKNRNKETR 379 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ +A+ E L +L S + +L + E+ + + + + Sbjct: 380 LLFVAHREEILTQSL----SAFRQVLQDPGFGELSVGNFKAKRADHLFISIQTFQHQRLW 435 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 + + + DE + + + P +T+ Sbjct: 436 ---------------EKLDSHYYDMIIVDEFHHAAAPSYQKL---LSYFKPRILLGLTAT 477 Query: 230 TRRLNG 235 R++G Sbjct: 478 PERMDG 483 >gi|94265636|ref|ZP_01289378.1| Helicase-like:Peptidase S24, S26A and S26B:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase-like [delta proteobacterium MLMS-1] gi|93453846|gb|EAT04209.1| Helicase-like:Peptidase S24, S26A and S26B:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase-like [delta proteobacterium MLMS-1] Length = 1196 Score = 42.6 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 26/201 (12%), Positives = 45/201 (22%), Gaps = 34/201 (16%) Query: 34 RFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93 P E +P Q E + A G+GKT L Sbjct: 394 HALPISPGSDEQEAPPEPTELQKE------ALAALAATRREGYRRGLVVMA-TGLGKTWL 446 Query: 94 NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153 A + ++ +A+ E L+ + L Sbjct: 447 AA----FDAGHCTARRVLFVAHREEILQQAA--------------------ATFLRIRPR 482 Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213 D++ + + R + H V DE + Sbjct: 483 ARAGFYLGRQRDAEVDLLFASIQTLARSEHLARFAADHFDYVVVDEFH---HAAAATYRR 539 Query: 214 FFTELNPNRFWIMTSNTRRLN 234 NP +T+ R + Sbjct: 540 LLRHFNPRFLLGLTATPERTD 560 >gi|300114986|ref|YP_003761561.1| type I site-specific deoxyribonuclease [Nitrosococcus watsonii C-113] gi|299540923|gb|ADJ29240.1| Type I site-specific deoxyribonuclease [Nitrosococcus watsonii C-113] Length = 776 Score = 42.6 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 41/290 (14%), Positives = 84/290 (28%), Gaps = 33/290 (11%) Query: 38 WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN--- 94 W + + + WQ + + + + + + ++ G GKT + Sbjct: 133 WRNRFAEVPFEDKGGAWQARYYQEIA--INKTLEAMAVGRARILLTLATGTGKTFIAFQL 190 Query: 95 AWMML---WLISTRPGM--SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLH 149 AW + W +S P I+ +A+ +N L + S P + ++ Sbjct: 191 AWKLFHSRWNLSREPNRRPRILFLAD-----RNILADQAYNAFSAFPEDALVRIDPATIR 245 Query: 150 PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209 G + I +T R + +F + DE Sbjct: 246 KKGRVPKNGSLFFTIFQ--TFMTGRDAAGNPAPSFGEYPPDFFDFIVIDECHRGGANDES 303 Query: 210 SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI 269 + G +P +T+ +R + D + E Y + +G + F Sbjct: 304 NWRGILEYFSPAVQLGLTATPKRQSN--GDTYAYFGEPVYVYSLKEGINDGFLTPFKVKQ 361 Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319 I+ D + + I E R +D + +I Sbjct: 362 IATTLDD-----------YVYTSDDQVIEGEIEE---GRRYTEDDFNRVI 397 >gi|222435774|ref|YP_002564202.1| gp6 [Mycobacterium phage Phlyer] Length = 586 Score = 42.6 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 42/348 (12%), Positives = 77/348 (22%), Gaps = 46/348 (13%) Query: 43 KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102 L P + + + ++ GK+T+ A Sbjct: 79 AELATAVDPEFVITPALRIISDAIEDVLRYP---RCNLLVTMPPQEGKSTMCAVWTPIRA 135 Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162 I +A L + + + L++ + Sbjct: 136 LQLNPNRRIILATYGDSLADQHSTTARDLIMRYGTGVTDALTGLAVEDKLGLKINPK--- 192 Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND-------EASGT--PDIINKSILG 213 + I D EA + +N+ Sbjct: 193 QAKVSSWRIDGAIGGMVAAGLGSAITGKSADLFIIDDPFKNMIEADSARHREKVNEWFAS 252 Query: 214 FFTEL-NPNRFWIMTSNTRRLNGWFYDIFNIPL-EDWKRYQIDTRTVEGIDSGFHEGIIS 271 + +P I+ I D + V + + Sbjct: 253 VASTRLSPEASMILIQTRWHPEDLSGTIIAGEKLLDAEDRTWRHINVPAVSEEGIPDALG 312 Query: 272 RYGLDSDV--ARIEILGQF-------------------PQQEVNNFIPHNYIEEAMSREA 310 R + AR L +F P+ + E R Sbjct: 313 RPEPGIPMISARGRTLREFNQTRKSVGERVWYALYQGSPRNPAGGLFMRAWFEPMAER-- 370 Query: 311 IDDLYAPLIMGCDIAGEG-GDKTVVV----FRRGNIIEHIFDWSAKLI 353 + I+ D A G GD+T ++ R G I+ DWS +L Sbjct: 371 SPERPLATIVAIDPADSGEGDETGIIGGMLDRDGTIVLT-DDWSDQLT 417 >gi|239825924|ref|YP_002948548.1| type III restriction protein res subunit [Geobacillus sp. WCH70] gi|239806217|gb|ACS23282.1| type III restriction protein res subunit [Geobacillus sp. WCH70] Length = 1053 Score = 42.6 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 28/189 (14%), Positives = 60/189 (31%), Gaps = 33/189 (17%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 H +P+ Q + + + + N K I A G GKT L+A + + Sbjct: 302 HSIKPNAMQEKALRNLQHTRKNGNN-------KGVIIAATGTGKTYLSA----FDVKAFN 350 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 ++ IA+ E L N + + ++P + F + ++ Sbjct: 351 PKKLLFIAHREELLDNA----IKTFQQVIPKKEIFGKITGTVKEFDKP------------ 394 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226 + S + + + DE + ++ +F P + Sbjct: 395 ---YLFSTVQSLHKDEILKRFKRDEFDYIIIDEFHHAEAPTYRKVIDYF---QPKFLLGL 448 Query: 227 TSNTRRLNG 235 T+ R++G Sbjct: 449 TATPERMDG 457 >gi|56419950|ref|YP_147268.1| hypothetical protein GK1415 [Geobacillus kaustophilus HTA426] gi|56379792|dbj|BAD75700.1| hypothetical protein [Geobacillus kaustophilus HTA426] Length = 1255 Score = 42.6 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 52/345 (15%), Positives = 90/345 (26%), Gaps = 40/345 (11%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFP-W-GIKGKPLEHFSQPHRWQLEFM 59 PR++ Q+L+QE H +L + + + F P W + K L S + Q + Sbjct: 740 PRVLQALQQLDQENHRIL---DLIRDPIRYRKTFRPNWDAEEVKALLRRSGLTKSQRQAF 796 Query: 60 EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM----SIICIAN 115 H + G GKT A + L+ +I+ Sbjct: 797 LQFLRHTL------------TLVWGPPGTGKTHFIAVALRLLMEMYEKRGRRLAILVSGF 844 Query: 116 SETQLKNTLWAEVSKWLSMLPH-RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 + ++N L H E+Q+ + A+ + H + Sbjct: 845 THAAIENVLRKIQELAPRRSVHIAKLGEIQTENAKGIAEVADRDLPRWLGNGGHRVLGAT 904 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGT-------PDIINKSILGFFTELN----PNRF 223 Y +R V DEAS K + P Sbjct: 905 LYGIQRAYEKDCL--EEFDVVILDEASQIRVADSLLAQRHVKKAGRLLIVGDHFQLPPII 962 Query: 224 WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283 + F IF + + ++ R + F + + Sbjct: 963 QGAYAAAEGEPHLFDSIFRLLFDA----DVEKRYTRQLTDNFRMNEALCRYPADRIYGRD 1018 Query: 284 ILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGC-DIAGE 327 Q + EA D PL++ D A Sbjct: 1019 YTAFNRQIAEQTLALVDAPTADEWVEAAIDPDYPLVVCVYDGAHG 1063 >gi|198430493|ref|XP_002126334.1| PREDICTED: similar to activating signal cointegrator 1 complex subunit 3-like 1 [Ciona intestinalis] Length = 2143 Score = 42.6 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 22/220 (10%), Positives = 46/220 (20%), Gaps = 28/220 (12%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 F + Q + A+ + A G GKT + +L ++ P Sbjct: 1328 DFPCFNPIQTQVFNAIYNGDE-----------NVFVGAPTGSGKTVCAEFALLHALNLDP 1376 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 + + E W FE+ + + + Sbjct: 1377 DSRCVYVTPVEAVADLIY----KDWRKK------FEVSLGKRVVLLTGETSTDLRLISRA 1426 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL-------GFFTELN 219 T + + DE + ++L+ Sbjct: 1427 SIIIATSERWDVISRRWKQRKNVHTVSLFIVDEIHLIGGESGPELEVVCSRMRYIASQLD 1486 Query: 220 PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 N I ++ + + R V Sbjct: 1487 KNIRIIALGSSLANAKDVAQWLGCTNMHTFNFHPNVRPVP 1526 >gi|170593409|ref|XP_001901457.1| Hypothetical UPF0202 protein F55A12.8 in chromosome I [Brugia malayi] gi|158591524|gb|EDP30137.1| Hypothetical UPF0202 protein F55A12.8 in chromosome I, putative [Brugia malayi] Length = 1041 Score = 42.6 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 23/168 (13%), Positives = 46/168 (27%), Gaps = 18/168 (10%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 Q + + + S C I+A RG GK+ + + + +I Sbjct: 256 TLCQAKTLLKLLDVITEKTLQST-----CCITAARGRGKSAVL-GLAIAGAIGFDYANIF 309 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + + LK L+ V K L + + + + +Q + Sbjct: 310 VTSPAPDNLKT-LFEFVVKGLEAMNYEEHTDFE--------LIQSTNKQYNKALVRISIF 360 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219 + D + V DEA+ P + + Sbjct: 361 KGHRQVIQYIDPXDSVKLSQAELVVVDEAAAIP---FPIVKNLISGPY 405 >gi|257468550|ref|ZP_05632644.1| putative phage terminase, large subunit [Fusobacterium ulcerans ATCC 49185] gi|317062808|ref|ZP_07927293.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] gi|313688484|gb|EFS25319.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] Length = 568 Score = 42.2 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 36/309 (11%), Positives = 79/309 (25%), Gaps = 58/309 (18%) Query: 69 NVNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127 + F+ A I GR GK+ L+ + S I A ++ + N +W + Sbjct: 84 RRKRTKERRFREAYIQVGRRNGKSFLSGEQATFFSSYLGMKDRIFCAATKQEQANIVWDD 143 Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187 + ++ S + + ++++ I + D F Sbjct: 144 IRNFIE-----------SDVDLIELYKVKEHDRTIKSLITDTVIKSLGRDTKSMDGFGNI 192 Query: 188 HNTHGMAVFNDEASGTPDIIN------------KSILGFFTELN---------------- 219 DE P+ ++ T Sbjct: 193 ------LAICDELHAHPNNQMYKLLLDGQADVDNALTLAITTAGFNLNSFCYEHYQFCEK 246 Query: 220 -------PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE---GI 269 +I + + + + + + D E + + E Sbjct: 247 ILEGLVDKESLFIFICEMDKDDDIWEPKNWLKANPYFLFNEDGTINEKKLARYAEKAIDA 306 Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEA-MSREAIDDLYAPLIMGCDIAGEG 328 + G D + L + + +I + D +G D++ +G Sbjct: 307 KEKGGEDLTNFLTKQLNMWVTAKGGQYIDLAKFKSCESELTLKDMKGRKAYLGFDLS-KG 365 Query: 329 GDKTVVVFR 337 GD T + Sbjct: 366 GDLTSIALI 374 >gi|238920914|ref|YP_002934429.1| ATP-dependent RNA helicase SrmB [Edwardsiella ictaluri 93-146] gi|238870483|gb|ACR70194.1| ATP-dependent RNA helicase SrmB [Edwardsiella ictaluri 93-146] Length = 448 Score = 42.2 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 51/216 (23%), Gaps = 20/216 (9%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 SA G GKT L + P ++ + + Sbjct: 47 SAPTGTGKTAAFLLPALQHLLDFPRKKSGPPRVLILTPTRELAMQV----------ADQA 96 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 R SL + + + ++ + + + Sbjct: 97 RELARHTSLDITTITGGVSYINHAEIFNTNQDLVVATPGRLLQYIKEENFDCRAVETLIL 156 Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257 DEA D+ S + + R + + + +D L D + Sbjct: 157 DEADRMLDMGFASDIETVSAETRWRRQTLLFSATLESDAVHDFAARLLNDPVDV---SAE 213 Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293 + + Y DS + +L +Q Sbjct: 214 PPRRERKKIQQW--YYRADSLKHKTALLCNLLRQPD 247 >gi|145341798|ref|XP_001415990.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144576213|gb|ABO94282.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 663 Score = 42.2 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 31/257 (12%), Positives = 65/257 (25%), Gaps = 18/257 (7%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 + +Q E ++ + + + G+GKT ++ + R Sbjct: 186 GESDELRSYQKEGVKWMAFNFRAGRGCILADEM--------GLGKTAQALALIHHCLQVR 237 Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS--GWYAELLEQSMG 163 PG+ + + T + E +W+ Q+ WY + E Sbjct: 238 PGLPALVVVPLSTIVN--WEREAQRWVPDAYVVTHVGKQAGREFAREHDWYHPVDETQSI 295 Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223 + I TY D + DEA + + L R Sbjct: 296 SRAFKANIVLTTYETITADR-QSFAKAKWSTMVVDEAHRLK-RVGGKLGNDLNSLAVERI 353 Query: 224 WIMTSNT---RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLD-SDV 279 ++T W F + + + E + G Sbjct: 354 CLLTGTPLQNNTTELWSLLNFVDSKHFSNAEEFEEAFGGMAKAAQVERLQKVLGPYLLRR 413 Query: 280 ARIEILGQFPQQEVNNF 296 + ++ + P + Sbjct: 414 LKRDVEQKLPPRSETLV 430 >gi|146104782|ref|XP_001469910.1| helicase [Leishmania infantum] gi|134074280|emb|CAM73025.1| putative helicase [Leishmania infantum JPCM5] Length = 1285 Score = 42.2 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 31/243 (12%), Positives = 64/243 (26%), Gaps = 24/243 (9%) Query: 43 KPLEHFSQP-HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101 E +P +Q + + +N+N G+GKT ++ + Sbjct: 255 LDTEGGQRPLRHYQRSALRWMVHLYENNLNGILADEM--------GLGKTVQTIALLCYF 306 Query: 102 ISTRPGMSI-ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 + + + L AE+ +W L + + Sbjct: 307 AEYHNDWGPHLIVVPTTVVLN--WKAELERWSPGLKVLTYIGSTKERHLLRKGWT----- 359 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220 S+ C T + DEA + +L Sbjct: 360 -----SEDAFHVCVTSYNLVVQDRKAFRRRPWGFLVLDEAHHVKN-FMSLKWQSLFDLQA 413 Query: 221 NRFWIMTSNT-RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279 ++T + + +F+ L ++ + E + E I R L+ D+ Sbjct: 414 EYRLLLTGTPLQNSIMELWSLFHFLLPFASAFRSNAEFKEWFSNPMDEMITGRSTLNEDI 473 Query: 280 ARI 282 R Sbjct: 474 VRR 476 >gi|260942529|ref|XP_002615563.1| hypothetical protein CLUG_04445 [Clavispora lusitaniae ATCC 42720] gi|238850853|gb|EEQ40317.1| hypothetical protein CLUG_04445 [Clavispora lusitaniae ATCC 42720] Length = 819 Score = 42.2 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 55/184 (29%), Gaps = 7/184 (3%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G+GKT + + +S RP + + Q KN + A + + H +S Sbjct: 236 GMGKTIQTIALFMNDLSKRPNLVVGPTVA-LMQWKNEIEAHTHEGKLKVLLFHGANRESD 294 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + L S+ S + H V DEA D Sbjct: 295 IKELEKYDVILTSYSVLESSYRKERYGFKRKDGVVKQKSPLHALKFYRVILDEAHNIKDR 354 Query: 207 INKSILGFFTELNPNRFWIMTSNT-RRLNGWFYDIFNIPLED----WKRYQIDTRTVEGI 261 + + +LN + W +T + G Y + D + + + E Sbjct: 355 TSGTAKAA-NDLNCEKRWCLTGTPLQNRIGEMYSLIRFMKLDPFYKYFCTKCPCSSSEWK 413 Query: 262 DSGF 265 S + Sbjct: 414 FSDW 417 >gi|110680616|ref|YP_683623.1| UvrD/REP helicase, putative [Roseobacter denitrificans OCh 114] gi|109456732|gb|ABG32937.1| UvrD/REP helicase, putative [Roseobacter denitrificans OCh 114] Length = 549 Score = 42.2 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 34/259 (13%), Positives = 72/259 (27%), Gaps = 27/259 (10%) Query: 77 IFKCAISAGRGIGKTTLNAW---MMLWLISTRPGMSIICIA-------NSETQLKNTLWA 126 A++AG G GKT + A +L + R I+ I+ N + +++ Sbjct: 27 ARNLALTAGPGAGKTEMLAQRADFLLRTGTCRYPRRILAISFKTDASQNLKARVRKRCGP 86 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 ++ + + P + L I + T+++ P Sbjct: 87 GLAARFDSYTFHAFAKRIIDRFRPVLSGRDALNPDYSIGPRRVQHQSITFADMVPLACKI 146 Query: 187 PH---------NTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 VF DE D + IL F + +T++ + Sbjct: 147 IEDSLVARNAVRQTYSHVFLDEFQDCTDEQYRLILASF--GDTPTILTAVGDTKQSIMGW 204 Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297 + + + + + + + ++ P + I Sbjct: 205 A---GALEGIFHTFADAFDALPRNLYQNFRSAPALRRMQNAMVKVM---DPPAALDDADI 258 Query: 298 PHNYIEEAMSREAIDDLYA 316 + E + R DD A Sbjct: 259 IGDEGEICILRFEDDDDEA 277 >gi|291460281|ref|ZP_06599671.1| putative helicase [Oribacterium sp. oral taxon 078 str. F0262] gi|291417036|gb|EFE90755.1| putative helicase [Oribacterium sp. oral taxon 078 str. F0262] Length = 1194 Score = 42.2 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 54/172 (31%), Gaps = 11/172 (6%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS-IICIANSETQLKNTLWAEVSKW- 131 + ++ G+GKT A ++L + R ++ ++ I + E+ ++ Sbjct: 285 QADSPRVLVADDVGVGKTI-EAGLILKELEARSSLTSVLVICPRPLVAERKWQLEMKRFD 343 Query: 132 --LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS-KHYTITCRTYSEERPDTFVGPH 188 + L R E S + W + + +I R + +G Sbjct: 344 EDFTQLDGRMLAECISETDRDGEWPERHSKTIIPYSLFGEDSIMGRGSRSGKKHKDIGLS 403 Query: 189 ----NTHGMAVFNDEASGTPDIINKSILGF-FTELNPNRFWIMTSNTRRLNG 235 H V DEA + + G N + +T+ + + Sbjct: 404 ELDPLPHFDLVIVDEAHNIRNANTWAYRGVELFCRNADAVVFLTATPLQNSN 455 >gi|227504932|ref|ZP_03934981.1| superfamily II DNA/RNA helicase [Corynebacterium striatum ATCC 6940] gi|227198441|gb|EEI78489.1| superfamily II DNA/RNA helicase [Corynebacterium striatum ATCC 6940] Length = 1243 Score = 42.2 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 31/202 (15%) Query: 21 HAECVLSFKNFVMRFFPWGIKGKPLEHFS--QPHRWQLEFM-EAVDVHCHSNVNNSNPTI 77 A S N+ FP L P Q E + +A+ + Sbjct: 148 TAAIAESPINW-DVTFPGSEIEINLTRREVFSPRPHQQEAISKAIAGFETHDRGK----- 201 Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGM-SIICIANSETQLKNTLWAEVSKWLSMLP 136 I A G GKT + G ++ + S + L TL ++ LP Sbjct: 202 ---LIMAC-GTGKTFTALRLAEQYAENNGGRARVLFLVPSISLLSQTLKEWTAQNQEHLP 257 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP----------DTFVG 186 + + + + + + + I RT +R + Sbjct: 258 LKSYAVCSDTKVSKKAEDIASYDLEVPVSTNGKNIAERTAQGKRRAGINVIFSTYQSIEA 317 Query: 187 PH-------NTHGMAVFNDEAS 201 H V DEA Sbjct: 318 IHEAQAEYGMDDFDLVICDEAH 339 >gi|126272592|ref|XP_001369134.1| PREDICTED: similar to hCG32858 [Monodelphis domestica] Length = 1407 Score = 42.2 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 27/207 (13%), Positives = 58/207 (28%), Gaps = 17/207 (8%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + +L+ E+ ++ E F ++ P K ++ Q + M+ Sbjct: 569 LSKLMENTPVSEKLRDLIIDFREPQ--FIQYLSSVLPHEAKDTVANILKGLNKPQRQAMK 626 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 V + + G GKTT ++ L + G S++ + + + + Sbjct: 627 KV----------LLSKDYTLIVGMP-GTGKTTTICALVRILYAC--GFSVLLTSYTHSAV 673 Query: 121 KNTLWAEVSKWLSMLPHRHWFEM--QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 N L + + L ++ E +S+ + Y + Sbjct: 674 DNILLKLMKFKVGFLRLGQTQKVHPNIQKFTEEEICREKSIKSLTSLEELYNSQPIVATT 733 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPD 205 DEAS Sbjct: 734 CMAINHPIFSRKRFDFCIVDEASQISQ 760 >gi|300362646|ref|ZP_07058822.1| helicase [Lactobacillus gasseri JV-V03] gi|300353637|gb|EFJ69509.1| helicase [Lactobacillus gasseri JV-V03] Length = 957 Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 57/184 (30%), Gaps = 32/184 (17%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P++ Q E + +D + + + G GKT L A+ + Sbjct: 223 PNQMQKEALANLDALVKEQAK-------RALVVSATGTGKTYLGAFAV----KEYKPKKF 271 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + + + E K L E + R + + D K+ Sbjct: 272 LYLVHREQIAKKAL--ESFYQVIGGKKRDYGLLTGNK--------------HDFDKKYLF 315 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 T +T S+E+ + + DEA + IL FT P MT+ Sbjct: 316 GTVQTVSQEQI--LGQLNPEEFDYILIDEAHRVAAPTYQKILNHFT---PKFLLGMTATP 370 Query: 231 RRLN 234 R++ Sbjct: 371 ERMD 374 >gi|172055098|ref|YP_001806425.1| putative helicase [Cyanothece sp. ATCC 51142] gi|171701379|gb|ACB54359.1| putative helicase [Cyanothece sp. ATCC 51142] Length = 517 Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 22/190 (11%), Positives = 55/190 (28%), Gaps = 40/190 (21%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q + +++V ++ + + AG G GKT + + + + ++ Sbjct: 14 RPYQADVVKSVHQQLKTDQ--------RVLVVAGTGAGKTVIASHLTQDFLLQN--KKVL 63 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + + ++ L + K + LPH L+L ++ + Sbjct: 64 FLVH-----RDILVKQTVKKFAHLPHGIIAGRNPLNLSQ---PLQVASVQTLGRKGIEWL 115 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN----KSILGFFTELNPNRFWI-M 226 H+ V DE+ + + I + Sbjct: 116 N---------------HHFPFHVVIFDESHL--TNWFKFSLQLFPPLPLSSDKKTLCIGL 158 Query: 227 TSNTRRLNGW 236 T+ R + + Sbjct: 159 TATPWRRSKY 168 >gi|317490974|ref|ZP_07949410.1| terminase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920521|gb|EFV41844.1| terminase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 590 Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 39/358 (10%), Positives = 80/358 (22%), Gaps = 62/358 (17%) Query: 38 WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97 + W E + H N+ + I R IG T A+ Sbjct: 126 YRKNDISSLTQEDFDTWADEHLFGYQKHLRLNIAQTVRN-----ILKSRQIGATWYFAFE 180 Query: 98 MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 I A+ AEV + + + +F + Sbjct: 181 AFENAVLTGDPQIFLSASKAQ-------AEVFRSYIVNIAQQYFGIDLTGNPIRLSNGAE 233 Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217 L + + + Y +E H +E + +K +F+ Sbjct: 234 LRFLSTNKNTAQSYSGHLYCDEYFWVPNFTH--------LNEVASAMATHDKWRTTYFST 285 Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPL-----EDWKRYQIDTRTVEGIDSGFHEGIISR 272 + G + + ++ + R + + Sbjct: 286 PSAKTHQAY----PFWTGEEWKRGSKKRAKVKFPEFDELRDGGRECPDGQWRYIITMEDA 341 Query: 273 YGLDSDVARIE--------------ILGQFPQQEVNNFIPHNYIEEA-MSREA------- 310 ++A IE + F + +E + R+ Sbjct: 342 IRGGFNLADIERLRNRYNDSTFAMLYMCVFVD-SKDAVFSFEDLERCGVDRDIWQDFDIK 400 Query: 311 --IDDLYAPLIMGCDIAGEGGDKTVVVFRRGNI-------IEHIFDWSAKLIQETNQE 359 + G D A G D + + + I +W + E Sbjct: 401 LKRPFGDREVWAGYDPARSG-DLSTFAVLAPPVLAVEKFRVLEIVNWHGMSFRWQANE 457 >gi|307197874|gb|EFN78973.1| Activating signal cointegrator 1 complex subunit 3 [Harpegnathos saltator] Length = 2132 Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 45/175 (25%), Gaps = 21/175 (12%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L FS + Q + + + + A G GKT M + Sbjct: 1286 LYPFSHFNPIQTQIFYCLYHTDN-----------NVLLGAPTGSGKTIAAEIAMFRVFKR 1334 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 PG I+ IA + ++ ++ W L R + M I Sbjct: 1335 YPGKKIVYIAPLKALVRER----INDWKIRLEERL------GKRVVELTGDVSPDIKMII 1384 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219 D+ T + + + DE + + + N Sbjct: 1385 DAHVIVTTPEKWDGISRSWQTRSYVRQVALIVIDEIHLLGEDRGPVLEVIISRTN 1439 >gi|154300125|ref|XP_001550479.1| hypothetical protein BC1G_10438 [Botryotinia fuckeliana B05.10] gi|150856727|gb|EDN31919.1| hypothetical protein BC1G_10438 [Botryotinia fuckeliana B05.10] Length = 1398 Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 48/152 (31%), Gaps = 21/152 (13%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI-STRPGMS 109 P +QLE +E ++ G GKT + +L + +PG Sbjct: 73 PRTYQLEMLEE-------------SLKRNVIVAMDTGSGKTHVAVLRILAELERMKPGKI 119 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I +A + L A+ ++L + +M + W + ++ D K Sbjct: 120 IWFLAPTVA-----LCAQHHEYLQLNIPSVLIKMLIGADGVDRWTEQRQWDTVLKDVKVV 174 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + + + F + DEA Sbjct: 175 VSSYQVLLDALTHGF--VRMGRLSLIIFDEAH 204 >gi|57640405|ref|YP_182883.1| reverse gyrase [Thermococcus kodakarensis KOD1] gi|73914060|sp|Q6F598|RGYR_PYRKO RecName: Full=Reverse gyrase; Includes: RecName: Full=Helicase; Includes: RecName: Full=Topoisomerase; Contains: RecName: Full=Pko r-Gyr intein gi|49532704|dbj|BAD26706.1| reverse gyrase [Thermococcus kodakaraensis] gi|57158729|dbj|BAD84659.1| Reverse gyrase [Thermococcus kodakarensis KOD1] Length = 1711 Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 38/132 (28%), Gaps = 7/132 (5%) Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 +I A G+GK+T A+M +W G + + + T+ Sbjct: 89 QRTWVKRLLKGRSFSIIAPTGMGKSTFGAFMAVWHAL--KGKKSYIVVPTTPLVIQTV-R 145 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 ++ + +L E E I ++ Y I + + Sbjct: 146 KIEGIMENANADVRLAYYHGNLRKK----EKEEMLERIKNEDYDILVTSAQWLARNYEEV 201 Query: 187 PHNTHGMAVFND 198 H +F D Sbjct: 202 LKGRHFDFIFVD 213 >gi|313202776|ref|YP_004041433.1| methylmalonyL-CoA mutase metallochaperone meab [Paludibacter propionicigenes WB4] gi|312442092|gb|ADQ78448.1| methylmalonyl-CoA mutase metallochaperone MeaB [Paludibacter propionicigenes WB4] Length = 369 Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 30/251 (11%), Positives = 72/251 (28%), Gaps = 13/251 (5%) Query: 62 VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121 + + I+ G GK+T + + L+ + ++++ I S + K Sbjct: 77 IAQEVIEKCLPYAGNAVRLGITGVPGAGKSTFIEALGMHLVRNKHKLAVLAIDPSSERSK 136 Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 ++ + ++ + ++ F S S G A +S+ + T + Sbjct: 137 GSILGDKTRMEELSVAKNAFIRPSPSAGSLGGVARKTRESIILCEAAGFDTIFVETVGVG 196 Query: 182 DTFVGPHNTHGMAVFN------DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 + H+ + DE G I + G + Sbjct: 197 QSETSVHSMVDFFLLIQLAGTGDELQGIKRGIMEMADGIAINKCDGTNVDKARVAKSQYQ 256 Query: 236 WFYDIFNIPLEDW--KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293 +F W + + + GI + + S+ +F + Sbjct: 257 NALHLFPPHDSGWSPEAITCSSVELNGIPEVWDMVERYVKFVKSNDY-----FEFKRNSQ 311 Query: 294 NNFIPHNYIEE 304 + + + I E Sbjct: 312 SKYWMYETINE 322 >gi|307318836|ref|ZP_07598268.1| protein of unknown function DUF264 [Sinorhizobium meliloti AK83] gi|306895557|gb|EFN26311.1| protein of unknown function DUF264 [Sinorhizobium meliloti AK83] Length = 477 Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 37/262 (14%), Positives = 61/262 (23%), Gaps = 29/262 (11%) Query: 83 SAGRGIGKTTLNAWMML---------WLISTRPGMSIICIA--NSETQLKNTLWAEVSKW 131 AG +GKT A W R I+ +A S ++ + + Sbjct: 63 MAGNQLGKTLAGAAEAAMHLTGRYPDWWQGRRFDRPIVMLAGSESYELTRDGVQRLL--- 119 Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191 + H + L S +DS S + Sbjct: 120 IGPPLHEEEWGTGFLPKAAIKATTRRAGASGALDSVTVRHVSGRASTLLFKAYEQGRAKW 179 Query: 192 ----GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLE 246 V+ DE P+ + G +T R + Sbjct: 180 QANTVDYVWFDEEP--PEDVY--FEGITRTNATRGAIAVTFTPLRGLSAVVARYLMEKSP 235 Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306 D + E + +I Y AR P P EE++ Sbjct: 236 DRAVITMTIEDAEHYTPQERQRVIDSYPAHEREARTRG---VPALGSGRIFP--VTEESI 290 Query: 307 SREA-IDDLYAPLIMGCDIAGE 327 + + I G D + Sbjct: 291 RIDPFEIPKHWVQIGGLDFGWD 312 >gi|123456065|ref|XP_001315771.1| Type III restriction enzyme, res subunit family protein [Trichomonas vaginalis G3] gi|121898458|gb|EAY03548.1| Type III restriction enzyme, res subunit family protein [Trichomonas vaginalis G3] Length = 876 Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 22/174 (12%), Positives = 40/174 (22%), Gaps = 25/174 (14%) Query: 42 GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101 G P ++ WQ E ++ N C A GKT + + L Sbjct: 32 GIPPPAITKLREWQTELLK----------TNDWAQRKSCVCVAPTSGGKTLIAEIAISQL 81 Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161 + P II ++ + ++ S Sbjct: 82 LDDNPHAKIIYALPFVALASEKFLDFEKRFRK---------YTVRPFFQNIGGSDFRTGS 132 Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 + T ++ ++ V DEA D + Sbjct: 133 I------AICTYEKAHSILNNSIKTGYHQDIKLVIIDEAHMIGDESRGVVAEAL 180 >gi|255590727|ref|XP_002535346.1| conserved hypothetical protein [Ricinus communis] gi|223523385|gb|EEF27037.1| conserved hypothetical protein [Ricinus communis] Length = 799 Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 12/116 (10%), Positives = 25/116 (21%), Gaps = 9/116 (7%) Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIPLE-DWKRYQIDTRTVEGIDSGFHEGIISRYG 274 + + W N Y F + + +++ ++ + Sbjct: 375 SGKETSEIWFSM-NPELDTDPVYTTFIQKRPANARIIEVNWDRNPFWNAAMEAERLRSKA 433 Query: 275 LDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI-------MGCD 323 D D G A L P++ +G D Sbjct: 434 DDPDDYDHIWEGIPRSAVAGAIYRREMHVIATENRIRPLLADPVLGTHAVFDLGID 489 >gi|172039764|ref|YP_001799478.1| putative helicase [Corynebacterium urealyticum DSM 7109] gi|171851068|emb|CAQ04044.1| putative helicase [Corynebacterium urealyticum DSM 7109] Length = 969 Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 26/201 (12%), Positives = 54/201 (26%), Gaps = 32/201 (15%) Query: 35 FFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN 94 + P + +P+ Q+E +E + N S + + + G GKT L Sbjct: 200 VYVPKHGAVPAGNVIEPNAMQVEALENI------NRLRSQGEQ-RALVISATGTGKTILG 252 Query: 95 AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWY 154 A + + + + ++E L + + +G Sbjct: 253 ALAV----RSANPKKFLFLVHTEQIL------------------DRAMLDFQKVLGAGPE 290 Query: 155 AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF 214 + S RP+ + + DE I+ Sbjct: 291 EFGKFAGSSRELGKRYTFATIASLSRPENLYKLSQDYFDFIIVDEVHRAEAATYVRIIEH 350 Query: 215 FTELNPNRFWIMTSNTRRLNG 235 P+ +T+ R +G Sbjct: 351 L---KPDFLLGLTATPERTDG 368 >gi|156839586|ref|XP_001643482.1| hypothetical protein Kpol_489p5 [Vanderwaltozyma polyspora DSM 70294] gi|156114095|gb|EDO15624.1| hypothetical protein Kpol_489p5 [Vanderwaltozyma polyspora DSM 70294] Length = 1048 Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 24/168 (14%), Positives = 46/168 (27%), Gaps = 28/168 (16%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR----PGMSI 110 Q E + C IS+ G GKT L +L L+ + I Sbjct: 2 QSEAFRYIYDTDE-----------NCVISSPTGSGKTVLFELAILRLLRDNNYSADNIKI 50 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + IA + K+ + + W S + + S + + E ++ Sbjct: 51 LYIAPT----KSLCYEQSKNWSSKFLNLSVGMLTSDTSYS--------ETDKVRNANIII 98 Query: 171 ITCRTYSEERPDTFVGPHNTHGM-AVFNDEASGTPDIINKSILGFFTE 217 T + + + DE + ++ T Sbjct: 99 TTPEKWDLLTRKWEDYKRLFELVKLILVDEIHMLKERRGSALEVVLTR 146 >gi|50843064|ref|YP_056291.1| phage-associated protein [Propionibacterium acnes KPA171202] gi|50840666|gb|AAT83333.1| conserved phage-associated protein [Propionibacterium acnes KPA171202] gi|315106939|gb|EFT78915.1| protein, SNF2 family [Propionibacterium acnes HL030PA1] Length = 458 Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 56/192 (29%), Gaps = 28/192 (14%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG--M 108 PH +Q + H + AI G G+GK+ + +W + Sbjct: 5 PHNYQQTATRFILDHHEA------------AILLGMGLGKSVIT-LTAIWQLLLDYFTVS 51 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 ++ +A ++T AEV+KW + + + + + + ++ Sbjct: 52 RVLVVAP-LRVARDTWPAEVAKWDHLQGLSVAVAVGTKADRLDALAKSAMVTVINRENIP 110 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 + + S V DE S + K + W+ + Sbjct: 111 WLVRQYGDS------------WPFDMVVIDELSSFKNHRAKRFTALVKMRPHVKRWVGLT 158 Query: 229 NTRRLNGWFYDI 240 T NG Sbjct: 159 GTPASNGLMDIW 170 >gi|302874456|ref|YP_003843089.1| PhoH family protein [Clostridium cellulovorans 743B] gi|307690937|ref|ZP_07633383.1| PhoH family protein [Clostridium cellulovorans 743B] gi|302577313|gb|ADL51325.1| PhoH family protein [Clostridium cellulovorans 743B] Length = 458 Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 28/208 (13%), Positives = 54/208 (25%), Gaps = 15/208 (7%) Query: 35 FFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN 94 P K Q + Q +EA+ I G KT + Sbjct: 221 IVPLYNKDIVPFGIKQRNAGQRFMLEALAT--------DASKAPLVIIKGPAGTAKTLFS 272 Query: 95 AWMMLWLISTRPGMS---IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151 + L I + I+ + + L + + +L + Sbjct: 273 LAVGLHEILEQEDKKYRKILVCRPN-VTMDEELGFLPGTEQDKIAPYMRPVLDNLEILVD 331 Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211 E + + K + R ++ + V DEA K+I Sbjct: 332 SDEKERYKNEKELSDKVSELFDRKIITTEAVAYLRGRSIVKNWVIIDEAQNLSPKQVKAI 391 Query: 212 LGFFTELNPNRFWIMTSNTRRLNGWFYD 239 T + I+ + +++ F D Sbjct: 392 ---ITRVGVGTKLILIGDPEQIDNPFLD 416 >gi|333010190|gb|EGK29625.1| phage terminase large subunit domain protein [Shigella flexneri K-272] gi|333021147|gb|EGK40404.1| phage terminase large subunit domain protein [Shigella flexneri K-227] Length = 235 Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 20/39 (51%) Query: 313 DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 + +G D+A G DK V+R G+++ +W AK Sbjct: 10 EPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAK 48 >gi|323691318|ref|ZP_08105593.1| PhoH family protein [Clostridium symbiosum WAL-14673] gi|323504658|gb|EGB20445.1| PhoH family protein [Clostridium symbiosum WAL-14673] Length = 473 Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 18/178 (10%), Positives = 47/178 (26%), Gaps = 7/178 (3%) Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG---MSIICIANSETQLK 121 + + G KT + + L + P I+ + Sbjct: 258 FLQEALMQPADKAPLVIVKGMAGTSKTFYSLAVGLEKLVNNPNGEYRRILISRPNAQFDT 317 Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 + + ++ + P + +L + + K I R + Sbjct: 318 DIGFLPGNEQEKISPL-MRPIIDNLEQLIDSSEEQRYSNEKELSDKIQEIFDRGLIQTEA 376 Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239 ++ + + DEA + G T + I+ + +++ + D Sbjct: 377 LNYIRGRSIVKTYLIIDEAQNMTPNQ---VKGIITRAGKDTKIILLGDPNQIDRPYLD 431 >gi|323483237|ref|ZP_08088628.1| hypothetical protein HMPREF9474_00377 [Clostridium symbiosum WAL-14163] gi|323403510|gb|EGA95817.1| hypothetical protein HMPREF9474_00377 [Clostridium symbiosum WAL-14163] Length = 378 Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 18/178 (10%), Positives = 47/178 (26%), Gaps = 7/178 (3%) Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG---MSIICIANSETQLK 121 + + G KT + + L + P I+ + Sbjct: 163 FLQEALMQPADKAPLVIVKGMAGTSKTFYSLAVGLEKLVNNPNGEYRRILISRPNAQFDT 222 Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 + + ++ + P + +L + + K I R + Sbjct: 223 DIGFLPGNEQEKISPL-MRPIIDNLEQLIDSSEEQRYSNEKELSDKIQEIFDRGLIQTEA 281 Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239 ++ + + DEA + G T + I+ + +++ + D Sbjct: 282 LNYIRGRSIVKTYLIIDEAQNMTPNQ---VKGIITRAGKDTKIILLGDPNQIDRPYLD 336 >gi|281355726|ref|ZP_06242220.1| exodeoxyribonuclease V, alpha subunit [Victivallis vadensis ATCC BAA-548] gi|281318606|gb|EFB02626.1| exodeoxyribonuclease V, alpha subunit [Victivallis vadensis ATCC BAA-548] Length = 635 Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 21/165 (12%), Positives = 44/165 (26%), Gaps = 20/165 (12%) Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 + + IS G G GKTT+ A ++ + P + + A + Sbjct: 174 QRLAALAAASRDFTVISGGPGTGKTTVVAALLALEFARAPELRVALCAPTG--------K 225 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 ++ L + ++ I S T ++ + Sbjct: 226 AQARLGEALREDGLKIGTAEAIRRRILELAPSTIDRLIGSAPLTH----RTKYHAGNPLP 281 Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 V DE+S + ++ P I+ + Sbjct: 282 F-----DLVIVDESSMVSLPLMARLMQALA---PETRLILLGDPN 318 >gi|58336778|ref|YP_193363.1| phage related helicase [Lactobacillus acidophilus NCFM] gi|58254095|gb|AAV42332.1| phage related helicase [Lactobacillus acidophilus NCFM] Length = 864 Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 28/190 (14%), Positives = 54/190 (28%), Gaps = 37/190 (19%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 QP++ Q E + + + N K I + G GKT L A + + Sbjct: 222 QPNKMQKEALGEIQSLRQNGKN-------KALIISATGTGKTYLGA----FDVQKFKPKR 270 Query: 110 IICIANSETQL---KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 + + + E L +N+ + + S + + Sbjct: 271 FLYVVHREQILQKSRNSFYDVIGGAYSDYG--------------------IYSGNHREGL 310 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226 K I + + + + DEA + I +F P M Sbjct: 311 KSKYIFATVQTLAKDENLKKFARDAFDYILFDEAHHLGSVQELKIFNYF---QPQFCLGM 367 Query: 227 TSNTRRLNGW 236 T+ R + + Sbjct: 368 TATPERTDDF 377 >gi|329955139|ref|ZP_08296096.1| ATP-dependent DNA helicase PcrA [Bacteroides clarus YIT 12056] gi|328526138|gb|EGF53157.1| ATP-dependent DNA helicase PcrA [Bacteroides clarus YIT 12056] Length = 785 Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 34/296 (11%), Positives = 85/296 (28%), Gaps = 31/296 (10%) Query: 58 FMEAVDVHCHS-NVNNSNPTIFK---CAISAGRGIGKTTLNAWMMLWLISTRP-GMSIIC 112 + + + N ++ + AG G GKT + + + +L+ +I+ Sbjct: 1 MIRNMSDYIQELNEGQRAAVLYNDGPSLVIAGAGSGKTRVLTYKIAYLLENGYQPWNILA 60 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 + + + + +++ + + RH + S+ +AE T Sbjct: 61 LTFTNKAARE-MKERIARQVGIERARHLWMGTFHSIFLRILHAEAARI---------GFT 110 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232 + + D+ + E + ++ N Sbjct: 111 SKFTIYDTADSKSLLRS------IIKEMGLDEKVYKPGMVQSRISNAKNHLVSPAGYANN 164 Query: 233 LNGWFYDI---FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 + D + ++RY R + +D D QF Sbjct: 165 KEAYEGDCAAKMPALRDIYRRYWERCRQADAMDFDDLLFYTFLLFRDHPDVLARYQSQFR 224 Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHI 345 V+ + N+ + ++ + + ++ G D + RG I++I Sbjct: 225 YILVDEYQDTNFAQHSIVLQLAKEHQHVCVV-------GDDAQSIYSFRGADIDNI 273 >gi|290957398|ref|YP_003488580.1| type I restriction protein [Streptomyces scabiei 87.22] gi|260646924|emb|CBG70023.1| putative type I restriction enzyme [Streptomyces scabiei 87.22] Length = 1028 Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 16/120 (13%), Positives = 31/120 (25%), Gaps = 5/120 (4%) Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICI---ANSETQLKNTLWAEVSKWLS-MLPHRHWF 141 +G GK+ W+ W+ +P ++ I + Q++ Sbjct: 276 QGSGKSLTMVWLAKWIRENQPDARVLLITDRTELDDQIEKVFQGVNESIYRTKSGGDLLA 335 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + S ++ E + H + VF DEA Sbjct: 336 TLNVSEEWLVCSLVHKFRGSEDEAARDA-AESEFIRELKATIPKDFHAKGNIFVFVDEAH 394 >gi|242020386|ref|XP_002430636.1| activating signal cointegrator 1 complex subunit 3, helc1, putative [Pediculus humanus corporis] gi|212515808|gb|EEB17898.1| activating signal cointegrator 1 complex subunit 3, helc1, putative [Pediculus humanus corporis] Length = 2141 Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 24/189 (12%), Positives = 51/189 (26%), Gaps = 27/189 (14%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L FS + Q + + + A G GKT + M + Sbjct: 1291 LYKFSHFNSIQTQIFHCLYHTDK-----------NVLLGAPTGSGKTVVAEIAMFRVFRV 1339 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS-MG 163 PG ++ IA + ++ + W L ++ L+ S + + Sbjct: 1340 YPGAKVVYIAPLKALVRERM----EDWKIRLEKNLKRKVVELTGDVSPDVKAINAADVIV 1395 Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223 + + R++ + DE + + + Sbjct: 1396 TTPEKWDGISRSWQTRNYV-------RKVALIIIDEIHLLGEDRGPVLEVIVS----RTN 1444 Query: 224 WIMTSNTRR 232 +I + T R Sbjct: 1445 FISSYTTNR 1453 >gi|313159749|gb|EFR59106.1| helicase C-terminal domain protein [Alistipes sp. HGB5] Length = 772 Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 45/326 (13%), Positives = 96/326 (29%), Gaps = 48/326 (14%) Query: 7 TDQKLEQELHEMLMHAECVLSFKNFVMRFFP-WGIKGKPLEHFSQ---PHRWQLEFMEAV 62 T ++ E +L + E + I P + + P +Q ++ Sbjct: 116 TGKETEIKLEDFPTEEELYNRYLASKNYTSDELNIIETPFYYDAHSHEPRYYQRIAVDRT 175 Query: 63 DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN 122 + + G GKT ++ L + I+ +A+ +N Sbjct: 176 VEAIARGQQ-------RVLVVMATGTGKTFTAFQIIHRLHKSGVKKKILYLAD-----RN 223 Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182 L + + F + S+ ++ + ++ + + E +PD Sbjct: 224 ILIDQT--MVQDFKPFKKFMTKITSV--GEGEEKIDSSYEVYMALYHQLVGK---EGKPD 276 Query: 183 TFVGPHNTHGMAVFNDEA---SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239 F+ + DE S D + +L +F+ MT+ + G Sbjct: 277 PFLEVQPNFFDLIIVDECHRGSAKDDSAWRKVLEYFSSATQ---IGMTATPKADEG---- 329 Query: 240 IFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299 +D +GI D +A + F ++ + P Sbjct: 330 ----------ANNLDYFGEPVYTYSLLQGI-----QDGFLAPYRVTADFINVDLQGWTPE 374 Query: 300 NYIEEAMSREAIDDLYAPLIMGCDIA 325 + + +E LY +G D+A Sbjct: 375 EGEIDLLGKEIEQKLYQRQNIGRDLA 400 >gi|292490248|ref|YP_003525687.1| type III restriction protein res subunit [Nitrosococcus halophilus Nc4] gi|291578843|gb|ADE13300.1| type III restriction protein res subunit [Nitrosococcus halophilus Nc4] Length = 531 Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 23/156 (14%), Positives = 43/156 (27%), Gaps = 8/156 (5%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 K + G GKT ++ + R + +ANS L+ + K +L R Sbjct: 149 KAVVHMPTGAGKTRTAMHILARHLLERGPTLVCWLANSAELLEQAA-EDFEKSWRVLGDR 207 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 ++ + + + + E+ D Sbjct: 208 P---VKLFRFWGDRSIDLHTLRDGVLVAGFAKMHAAYMREQNA---FIALGDRTSLTIVD 261 Query: 199 EASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRL 233 EA I FT+ N+ +T+ R Sbjct: 262 EAHQAIAPTYRSVIEALFTKRPQNQLLGLTATPGRT 297 >gi|118372980|ref|XP_001019684.1| hypothetical protein TTHERM_00136030 [Tetrahymena thermophila] gi|89301451|gb|EAR99439.1| hypothetical protein TTHERM_00136030 [Tetrahymena thermophila SB210] Length = 2532 Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 37/125 (29%), Gaps = 15/125 (12%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT------LWAEVSK-WLSMLPHRH 139 G GKT L A ++ I ++ + + + L N ++ E+ L +++ Sbjct: 2116 GTGKTFLIAHLI--KILADQKKKVLVTSFTNSALDNIIVKLLEIFPEIKNICLRKGSNKN 2173 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT--HGMAVFN 197 + + + + E Q + H+ Sbjct: 2174 LIHSVAQEILYNPYSFEEERQFSDYLKEKQIYFATIIGSNN----KLFHSEKIKFDYCII 2229 Query: 198 DEASG 202 DEAS Sbjct: 2230 DEASQ 2234 >gi|325995949|gb|ADZ51354.1| hypothetical protein hp2018_06581 [Helicobacter pylori 2018] gi|325997543|gb|ADZ49751.1| hypothetical protein hp2017_06571 [Helicobacter pylori 2017] Length = 1449 Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 54/204 (26%), Gaps = 42/204 (20%) Query: 29 KNFVMRFFPWGIKG-------KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81 ++F+ W PL +P Q E +E + + N Sbjct: 145 EDFIYSRIDWEKFDPTKTEDEIPLCDKKRPRPHQTEAIEETKKYFSNPKNARGK-----L 199 Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE-------------- 127 I A G GKT + L ++ + +A S L + E Sbjct: 200 IMAC-GTGKTYTS----LKIMEALDPKITLFLAPSIALLSQ-TFREYAQEKSDPFYASIV 253 Query: 128 --------VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI--DSKHYTITCRTYS 177 K S + L + PS ++L ++K + I S Sbjct: 254 CSDDKTGQSKKNKSKNEDNDDIKFSELPIKPSTRLEDILSTYEKAQKENKRFIIFSTYQS 313 Query: 178 EERPDTFVGPHNTHGMAVFNDEAS 201 R + DEA Sbjct: 314 ALRIKEAQEAGLNEIDLIICDEAH 337 >gi|307637357|gb|ADN79807.1| hypothetical protein hp908_0680 [Helicobacter pylori 908] Length = 1622 Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 54/204 (26%), Gaps = 42/204 (20%) Query: 29 KNFVMRFFPWGIKG-------KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81 ++F+ W PL +P Q E +E + + N Sbjct: 145 EDFIYSRIDWEKFDPTKTEDEIPLCDKKRPRPHQTEAIEETKKYFSNPKNARGK-----L 199 Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE-------------- 127 I A G GKT + L ++ + +A S L + E Sbjct: 200 IMAC-GTGKTYTS----LKIMEALDPKITLFLAPSIALLSQ-TFREYAQEKSDPFYASIV 253 Query: 128 --------VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI--DSKHYTITCRTYS 177 K S + L + PS ++L ++K + I S Sbjct: 254 CSDDKTGQSKKNKSKNEDNDDIKFSELPIKPSTRLEDILSTYEKAQKENKRFIIFSTYQS 313 Query: 178 EERPDTFVGPHNTHGMAVFNDEAS 201 R + DEA Sbjct: 314 ALRIKEAQEAGLNEIDLIICDEAH 337 >gi|258511072|ref|YP_003184506.1| type III restriction protein res subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477798|gb|ACV58117.1| type III restriction protein res subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 607 Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 33/265 (12%), Positives = 71/265 (26%), Gaps = 32/265 (12%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q+E ++A+ + + + A G GKT +++ + + P ++ Sbjct: 15 RDYQVEAVDAIRRY----------PKPRPVLVAATGAGKTVISSQFAVERLERGP---VL 61 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 +A+ + L TL + + + Sbjct: 62 FLAHRDELLDQTLDK-------FSVVFDALAEKGREVKIGRIQGPDDDVEADFAVASVQT 114 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF----TELNPNRFWIMT 227 + ER + ++ H T V DE I + + +T Sbjct: 115 ISQP---ERLERWMAAHETTPT-VITDECHHATARTYMRIYHALGFLGSVPEGHVHLGLT 170 Query: 228 SNTRRLNGW----FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283 + R + YD + + + +D + E Sbjct: 171 ATPYRTDKADLRKVYDGVAYAIGIHDLIDMGWLVPPKSVKLEIVEGLEGKDDGADWSDAE 230 Query: 284 ILGQFPQQEVNNFIPHNYIEEAMSR 308 + G VN I + +A R Sbjct: 231 VEGAVDTPSVNKQIVAAWQAQASDR 255 >gi|308234571|ref|ZP_07665308.1| type III restriction enzyme, res subunit [Atopobium vaginae DSM 15829] gi|328944169|ref|ZP_08241634.1| methylase [Atopobium vaginae DSM 15829] gi|327492138|gb|EGF23912.1| methylase [Atopobium vaginae DSM 15829] Length = 878 Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 60/187 (32%), Gaps = 19/187 (10%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q E + + + + N I A G GKT + A ++L+L + + Sbjct: 37 REYQKEAFQYFVTYFEKDALHKNKQIHTLFHMA-TGSGKTVMMAGLILYLYTKGYRKFLF 95 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE---------QSM 162 + + N L +L+ L ++ F L ++ + Sbjct: 96 FVNQT-----NILKKTEENFLNALSSKYLFADNLSHLGMKIKVKKVDRFSDTALDDDIEL 150 Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222 + T +S+E T+ N + +DE+ K TE + + Sbjct: 151 LFTTTQKLHTDMLFSKENAPTYADFENDKIIF-ISDESHHINSYTKK---KTSTEEDAEK 206 Query: 223 FWIMTSN 229 W T N Sbjct: 207 TWEYTVN 213 >gi|197335121|ref|YP_002155200.1| ATP-dependent RNA helicase SrmB [Vibrio fischeri MJ11] gi|197316611|gb|ACH66058.1| ATP-dependent RNA helicase SrmB [Vibrio fischeri MJ11] Length = 413 Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 82/303 (27%), Gaps = 38/303 (12%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMSI 110 E + SA G GK+ L + P I Sbjct: 19 EEIDYQRPTQVQAMTIPEALEGKDILASAPTGTGKSAAFLLPALQHLDDFPRREPGPARI 78 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + + + A+ ++ L+ F + + Q + Sbjct: 79 LILTPTRELAIQV--ADEARQLAKYTRHKVFTITGGISYQDHADILATTQDI-------- 128 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP-NRFWIMTSN 229 + + DEA D+ ++ ++ + + S Sbjct: 129 VVATPGRLMEYIEAERFDCRAIETLILDEADRMLDMGFGPVVDRLSKECRWRKQTFLFSA 188 Query: 230 T---RRLNGWFYDIFNIP---------LEDWKRYQIDTR-TVEGIDSGFHEGIISRYGLD 276 T R + G+ D+ N P E K Q R + I+ Sbjct: 189 TLEGRGVEGFTADLLNEPAEINAEPSRRERKKITQWYHRADNMAHKIDLLKSILKEQAER 248 Query: 277 SDVA--RIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP-------LIMGCDIAGE 327 S V E L + IP +I+ M++E+ ++ A +++ D+A Sbjct: 249 SIVFVKTRERLAELRGHLETAKIPCAWIQGEMAQESRNNAIARFRDGTVNVLIATDVAAR 308 Query: 328 GGD 330 G D Sbjct: 309 GID 311 >gi|328870919|gb|EGG19291.1| DEAD/DEAH box helicase [Dictyostelium fasciculatum] Length = 2224 Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 25/254 (9%), Positives = 59/254 (23%), Gaps = 29/254 (11%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 ++A GKT +L + P + IA E+ + W + Sbjct: 1404 NVFVAAPANTGKTVCAELAVLRTLINNPEARCVYIAPVESMVTVRS----RDWAYKFGQK 1459 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + + + ++ + I R + ++ D Sbjct: 1460 FGKVSVLTGDAVTDNKILEASRIIVTTAERWDILSRKWRQKNS------RVQSVSLFIVD 1513 Query: 199 EASGTP--------DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250 E +I+ + T+ +I S+ + Sbjct: 1514 ELQMIGSGESGSTMEIVLSRMRYIATQTGSPIRFIGLSSPVANARDLAEWMGATP----- 1568 Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310 + E + + + R + + + + A + Sbjct: 1569 -ATMFNFHPDVRPVEMEIQMQGFDYPNFQERQMAM-----TKPALYAVSHMDRTAQTLVY 1622 Query: 311 IDDLYAPLIMGCDI 324 + A M DI Sbjct: 1623 VPTRKAARQMAADI 1636 >gi|156344546|ref|XP_001621224.1| hypothetical protein NEMVEDRAFT_v1g222227 [Nematostella vectensis] gi|156206954|gb|EDO29124.1| predicted protein [Nematostella vectensis] Length = 1136 Score = 42.2 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 33/308 (10%), Positives = 76/308 (24%), Gaps = 37/308 (12%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 +F + + I + A+ R KTT ++ WLI + + + Sbjct: 54 DFYCGIFRIITNRNPEQLRKILRFALGLPRAHAKTTFVKVLICWLIVYDKISFVAILCAN 113 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 + S + ++ + + + Sbjct: 114 MDLASELMSDVSDMLGSSNCEAVYGLWAR-----QLTVDNKEQKKCLYHKRDVILIAKGA 168 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDI-----------INKSILGFFTELNPNRFWI 225 + + +F D+A + ++ T +R I Sbjct: 169 DGAV--RGLNIKHKRPDLIFCDDAQTKENDDSPTERVKFRKWLVAMFKIITPDPVDRLII 226 Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRY---------QIDTRTVEGIDSGFHEGIISRYGLD 276 N Y + N P W + + + ++ + + Sbjct: 227 YVGNMYSEECILYQLKNNP--RWISFITGAIKANGEPLWPELHSLEDLYESYEHDAALNE 284 Query: 277 SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE--GGDKTVV 334 +DV E++ P + + E + + + + D AG D V+ Sbjct: 285 ADVWFAEVMND-PVSRTTSLLTEQLPE--YKYNVEEQIPDGVFVTIDPAGFRENSDDNVI 341 Query: 335 ---VFRRG 339 G Sbjct: 342 VLHYVFDG 349 >gi|257466056|ref|ZP_05630367.1| PhoH family protein [Fusobacterium gonidiaformans ATCC 25563] gi|315917211|ref|ZP_07913451.1| PhoH family protein [Fusobacterium gonidiaformans ATCC 25563] gi|313691086|gb|EFS27921.1| PhoH family protein [Fusobacterium gonidiaformans ATCC 25563] Length = 435 Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 44/166 (26%), Gaps = 21/166 (12%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTR-PGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + G G GKT L L + R I K+ L + Sbjct: 245 VTLVGGAGTGKTLLAIAAALEQVVERKKYKKIFIARPIIPMGKD------------LGYL 292 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE---ERPDTFVGPHNTHG--M 193 E + L + + S K + + + Sbjct: 293 PGSEKEKLKPWMQPIFDNIEFLSHTRGEKTGEKVVQGLEAMGLMKIEPLTYIRGRSIPAG 352 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239 + DEA + K+I T + + + T + +++ + D Sbjct: 353 FIVIDEAQNLTPLEIKTI---VTRVGEDTKIVFTGDPAQIDNPYLD 395 >gi|257452151|ref|ZP_05617450.1| PhoH family protein [Fusobacterium sp. 3_1_5R] gi|317058696|ref|ZP_07923181.1| PhoH family protein [Fusobacterium sp. 3_1_5R] gi|313684372|gb|EFS21207.1| PhoH family protein [Fusobacterium sp. 3_1_5R] Length = 435 Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 44/166 (26%), Gaps = 21/166 (12%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTR-PGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + G G GKT L L + R I K+ L + Sbjct: 245 VTLVGGAGTGKTLLAIAAALEQVVERKKYKKIFIARPIIPMGKD------------LGYL 292 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE---ERPDTFVGPHNTHG--M 193 E + L + + S K + + + Sbjct: 293 PGSEKEKLKPWMQPIFDNIEFLSHTRGEKTGEKVVQGLEAMGLMKIEPLTYIRGRSIPAG 352 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239 + DEA + K+I T + + + T + +++ + D Sbjct: 353 FIVIDEAQNLTPLEIKTI---VTRVGEDTKIVFTGDPAQIDNPYLD 395 >gi|313649747|gb|EFS14171.1| phage terminase large subunit domain protein [Shigella flexneri 2a str. 2457T] gi|332761022|gb|EGJ91310.1| phage terminase large subunit domain protein [Shigella flexneri 4343-70] gi|332761328|gb|EGJ91614.1| phage terminase large subunit domain protein [Shigella flexneri 2747-71] gi|332763393|gb|EGJ93633.1| phage terminase large subunit domain protein [Shigella flexneri K-671] gi|333007918|gb|EGK27394.1| phage terminase large subunit domain protein [Shigella flexneri K-218] gi|333021518|gb|EGK40768.1| phage terminase large subunit domain protein [Shigella flexneri K-304] Length = 159 Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 20/39 (51%) Query: 313 DLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 + +G D+A G DK V+R G+++ +W AK Sbjct: 10 EPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAK 48 >gi|257791726|ref|YP_003182332.1| metal dependent phosphohydrolase [Eggerthella lenta DSM 2243] gi|257475623|gb|ACV55943.1| metal dependent phosphohydrolase [Eggerthella lenta DSM 2243] Length = 732 Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 61/237 (25%), Gaps = 36/237 (15%) Query: 8 DQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCH 67 D EQ L ++L + + + F P E V C Sbjct: 185 DPLSEQSLVDLLGCLK-------------------EEVARFYPPTSALNETRCQVLDACI 225 Query: 68 SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN--TLW 125 +N +P F + G GKT + L R ++ + ++ ++ Sbjct: 226 RAASN-HPGFFSLTV--PTGGGKTYASLLFALEHAVKRDARRVVYAVPYTSIIEQNARVF 282 Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK--------HYTITCRTYS 177 +V S+L H F+ S + + + Sbjct: 283 RDVLGERSVLEHHANFDFDFDEEVESYKSGDAKKALRRASENWDAPIVVTTNVQFFESLY 342 Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDI----INKSILGFFTELNPNRFWIMTSNT 230 R HN + DEA P ++++ + + Sbjct: 343 ANRTSRCRKLHNIANSVIVLDEAQMVPTKQLLPCLRALIELVANYGCSVVLCTATQP 399 >gi|110596909|ref|ZP_01385199.1| Helicase-like:DEAD/DEAH box helicase-like [Chlorobium ferrooxidans DSM 13031] gi|110341596|gb|EAT60056.1| Helicase-like:DEAD/DEAH box helicase-like [Chlorobium ferrooxidans DSM 13031] Length = 861 Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 21/176 (11%), Positives = 40/176 (22%), Gaps = 22/176 (12%) Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 H +ISA GK+ + + I + P +I+ + + ++ Sbjct: 147 NHFQREFWGRTKQNNWISISAPTSSGKSFILGQWLADYIRSSPCATIVYLVPTRALIQQV 206 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 + + +L L + + T Sbjct: 207 QQDLERVV--KSENIPLVAISTLPLLSA------------YKPGVANVFVFTQERFHILI 252 Query: 184 FVGPHNTHGMAVFNDEASGTPDII-----NKSILGFFTELNPNRFWIM---TSNTR 231 N + DEA D ++I R T N Sbjct: 253 GERGANLSVDLLIVDEAQKIGDNYRGVLLQQAIENTVHRNKNCRIVFASPMTDNPD 308 >gi|24380132|ref|NP_722087.1| hypothetical protein SMU.1764c [Streptococcus mutans UA159] gi|24378131|gb|AAN59393.1|AE015004_12 conserved hypothetical protein [Streptococcus mutans UA159] Length = 802 Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 21/210 (10%), Positives = 48/210 (22%), Gaps = 18/210 (8%) Query: 15 LHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSN 74 ++ + + L+ +G G P + E + S + + Sbjct: 223 INPLKQEEKIRLNRSYLEAIEKKYGEFGSPTTRLN-------EIRSQIAERVKSRGESDS 275 Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 I++ + G GKT L+ + + I + L+ A Sbjct: 276 TGIYRLDL--PTGAGKTNLSMRYAFHQLVDQDRSRFFYITPFLSVLEQNAAAIKKVIGED 333 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY---------TITCRTYSEERPDTFV 185 H + E + + +T + + Sbjct: 334 GVLEHHSNVVQNKQENEDKGDEKESLLPEYLIESWDSPVVLTSMVQFFQTLFKTKSANIR 393 Query: 186 GPHNTHGMAVFNDEASGTPDIINKSILGFF 215 + + DE P + Sbjct: 394 RFSSLANSVLILDEVQSLPIEVTALFNLTM 423 >gi|326803590|ref|YP_004321408.1| SNF2 family N-terminal domain protein [Aerococcus urinae ACS-120-V-Col10a] gi|326650654|gb|AEA00837.1| SNF2 family N-terminal domain protein [Aerococcus urinae ACS-120-V-Col10a] Length = 970 Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 17/158 (10%), Positives = 42/158 (26%), Gaps = 18/158 (11%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G+GKT +L P +++ +A + S + F + Sbjct: 547 GLGKTVQTVAFLLDYFDKLPQANVLILAPA------------SVIYNWKYEIQRFAPEVK 594 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + G E + + + +Y + H + + DEA + Sbjct: 595 VVVLDGSVEEREKIRKENPKAIWICSYHSYR----NDQEAYHQEYFDVLILDEAQALKNE 650 Query: 207 INKSILGFFTELNPNRFWIMTSNT-RRLNGWFYDIFNI 243 + + ++ F+ + + Sbjct: 651 R-TVLYQSVVNQDSGMRIGLSGTPLENNLNEFWALMQM 687 >gi|269140076|ref|YP_003296777.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202] gi|267985737|gb|ACY85566.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202] gi|304559904|gb|ADM42568.1| ATP-dependent RNA helicase SrmB [Edwardsiella tarda FL6-60] Length = 448 Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 20/192 (10%), Positives = 44/192 (22%), Gaps = 18/192 (9%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 SA G GKT L + P ++ + + Sbjct: 47 SAPTGTGKTAAFLLPALQHLLDFPRKKSGPPRVLILTPTRELAMQV----------ADQA 96 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 R SL + + + ++ + + + Sbjct: 97 RELARHTSLDITTITGGVSYINHAEIFNTNQDMVVATPGRLLQYIKEENFDCRAVETLIL 156 Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257 DEA D+ S + + R + + + +D + L D + Sbjct: 157 DEADRMLDMGFASDIETVSAETRWRRQTLLFSATLESDAVHDFADRLLNDPVDV---SAE 213 Query: 258 VEGIDSGFHEGI 269 + + Sbjct: 214 PPRRERKKIQQW 225 >gi|258440753|ref|ZP_05690695.1| phage terminase [Staphylococcus aureus A8115] gi|282894690|ref|ZP_06302917.1| phage terminase large subunit [Staphylococcus aureus A8117] gi|257852494|gb|EEV76414.1| phage terminase [Staphylococcus aureus A8115] gi|282762967|gb|EFC03100.1| phage terminase large subunit [Staphylococcus aureus A8117] Length = 431 Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 63/224 (28%), Gaps = 21/224 (9%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 N + ++ + RG K+ A ++ + +I+ + K + + ++ Sbjct: 20 HNKSFYRV-VKGSRGSKKSKTTAINFVYRLMKYDWANILVVRRFSNTNKQSTYTDLKWAT 78 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 + L H F+ + I R + T + Sbjct: 79 NQLGVAHLFKFNES------------LPEITYKPTGQKILFRGLDDPLKITSITVDTGIL 126 Query: 193 MAVFNDEASGTPD-----IINKSILGFFTELNPNRFWIMTSNTRRLNGW---FYDIFNIP 244 + +EA + +SI G + + +T N W + Sbjct: 127 CWAWFEEAYQIETFAKFSTVVESIRGSYDSPEFFKQITVTFNPWSERHWLKPTFFDEETK 186 Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 L + R E +D E Y + ARI G + Sbjct: 187 LNNTFSDTTTYRVNEWLDKVDIERYEDLYIKNPRRARIVCDGDW 230 >gi|206580893|ref|YP_002240749.1| type I site-specific deoxyribonuclease, HsdR family [Klebsiella pneumoniae 342] gi|206569951|gb|ACI11727.1| type I site-specific deoxyribonuclease, HsdR family [Klebsiella pneumoniae 342] Length = 1031 Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 21/188 (11%), Positives = 55/188 (29%), Gaps = 5/188 (2%) Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICI--ANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 +G GK+ W+ W+ P ++ + + +++ V + + + Sbjct: 278 QGSGKSLTMVWLAKWIRENVPNSRVLIVTDRTELDEQIESVFMGVDEEIYRTSSGNDLIA 337 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 +P + + + +++ T +E + + VF DE Sbjct: 338 TLNHPNPWLICSLVHKFGRRSEAEDTAATDDFITELQQSLTKTFRAKGDLFVFVDECH-- 395 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + T + P +I + T + + Y+ D +G+ Sbjct: 396 -RTQSGKLHNAMTAILPEALFIGFTGTPLMKKDKKKSVEVFGPYIHTYKFDEAVADGVVL 454 Query: 264 GFHEGIIS 271 Sbjct: 455 DLRYEARD 462 >gi|183600188|ref|ZP_02961681.1| hypothetical protein PROSTU_03732 [Providencia stuartii ATCC 25827] gi|188022485|gb|EDU60525.1| hypothetical protein PROSTU_03732 [Providencia stuartii ATCC 25827] Length = 630 Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 7/96 (7%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN---AWMMLWLI 102 F +P WQ + ++ + N + +I AG G GKT A +L Sbjct: 1 MKFIRPDHWQPQGIDDL----EPNAWQALRQRESTSIIAGPGAGKTEFLAQKAAYLLETG 56 Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 P I+ I+ KN + L +R Sbjct: 57 LCPPNKKILAISFKTDAAKNLADRVKERCPEELSNR 92 >gi|319651117|ref|ZP_08005250.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2] gi|317397171|gb|EFV77876.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2] Length = 463 Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 25/203 (12%), Positives = 51/203 (25%), Gaps = 25/203 (12%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 F +P Q + A+ + G GKTT +L I Sbjct: 1 MGFEEPTPIQAQ---AIPIGMKGKDMIGQAQT---------GTGKTTAFGVPLLEQIDLN 48 Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 G+ + +A + E+++ ++ + P ++ Q + Sbjct: 49 EGIQGLVLAPTRELAVQVA-EELNRIGQ---------VKGVRTLPVYGGQDITRQIRALK 98 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTE--LNPNR 222 + I ++ V DEA + I +E Sbjct: 99 KHPHIIAATPGRLIDHIERKTIRLSNIKMVVLDEADEMLNMGFIEDIERILSEIKGERQT 158 Query: 223 FWIMTSNTRRLNGWFYDIFNIPL 245 + +R+ P Sbjct: 159 LLFSATMPKRIQSLAEKFMQEPE 181 >gi|294673671|ref|YP_003574287.1| hypothetical protein PRU_0944 [Prevotella ruminicola 23] gi|294472506|gb|ADE81895.1| hypothetical protein PRU_0944 [Prevotella ruminicola 23] Length = 582 Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 17/126 (13%), Positives = 31/126 (24%), Gaps = 2/126 (1%) Query: 80 CAISAGRGIGKTTLNAW-MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 I AGR GKT A +L + PG + + + + + Sbjct: 44 TVIVAGRRTGKTDSIASPFVLRNMQRMPGSTGGIVVPTFKHGLTNTIPGLLAAWKRWGYL 103 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + P + + E + D ++ + D Sbjct: 104 NGIHYVVGRKPPRSFAKPITEP-ADYEHVITFYNGSIAVIISQDRPGSSNSLTLSWLLID 162 Query: 199 EASGTP 204 EA Sbjct: 163 EAKFID 168 >gi|302496558|ref|XP_003010280.1| ABC bile acid transporter, putative [Arthroderma benhamiae CBS 112371] gi|291173822|gb|EFE29640.1| ABC bile acid transporter, putative [Arthroderma benhamiae CBS 112371] Length = 1338 Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 42/249 (16%), Positives = 66/249 (26%), Gaps = 32/249 (12%) Query: 7 TDQKLEQELHEMLMHAECVLSFKNFVM-RFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV- 64 T Q L E L N V + P E+ S P W A + Sbjct: 1043 TFSSTLQTLVTAWTQLETALGAINRVRSYSQDVKDENLPNENGSVPDEWPESGAIAFNDV 1102 Query: 65 ---------HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 VN S K AI G GK++L + L + +I+ Sbjct: 1103 SASYDPSLGPVLKGVNLSINAGEKVAICGRTGSGKSSLVS--CLLRMLEMDSGTILI--- 1157 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS---LHPSGWYAELLEQSMGIDSKHYTIT 172 + +V L+ LP +F ++ E + S+ + Sbjct: 1158 DGIDISTISRQQVRSRLNTLPQEPFFLYGTVRDNVDPLQLADDEAVIGSLQAVGLWEFLE 1217 Query: 173 CRTYSEERPDTFVGPHNTHGMA------------VFNDEA-SGTPDIINKSILGFFTELN 219 R +E H + + DEA S +K + E Sbjct: 1218 ARGGLDEEVSEDKLSHGQRQLFCLARAVVKQGNILIMDEATSSVDAETDKVMEDVIREKF 1277 Query: 220 PNRFWIMTS 228 I + Sbjct: 1278 KGMTVIAIA 1286 >gi|194872386|ref|XP_001973017.1| GG15853 [Drosophila erecta] gi|190654800|gb|EDV52043.1| GG15853 [Drosophila erecta] Length = 687 Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 22/141 (15%), Positives = 38/141 (26%), Gaps = 4/141 (2%) Query: 72 NSNPTIFK-CAISAGRGIGKTTLNAWMMLWLISTRPGMSI--ICIANSETQLKNTLWAEV 128 P + +SA G GKT A ++ L+S R + + + + + Sbjct: 177 KPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVECKVRALIVLPVAELALQV-YRVI 235 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188 SK S + L + +T E G Sbjct: 236 SKLCSKTELEVCLLSKQHKLEDEQEKVVEQYKGKYYSKADIVVTTPGRLVEHLHATKGFC 295 Query: 189 NTHGMAVFNDEASGTPDIINK 209 + DEA D + + Sbjct: 296 LKSLKFLVIDEADRIMDAVFQ 316 >gi|256833664|ref|YP_003162391.1| hypothetical protein Jden_2456 [Jonesia denitrificans DSM 20603] gi|256687195|gb|ACV10088.1| conserved hypothetical protein [Jonesia denitrificans DSM 20603] Length = 1247 Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 17/196 (8%), Positives = 40/196 (20%), Gaps = 13/196 (6%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 A+ G GKT + + ++ G +I +A S + N L + + ++ + Sbjct: 858 VAVQGPPGAGKTFVASHVI--ASLAHQGWNIAVVAQSHAVINNVLTSVLGRFPELAGRIA 915 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + V DE Sbjct: 916 KNTPKKTDPPAGMVPVTPATIGQFFADNTTQGVVVGATAWQLANPDFAPPHGWDVVVIDE 975 Query: 200 ASGTPDIINKSILGF-----FTELNPNRFWIMTSNTRRLNGWFYDIF------NIPLEDW 248 A + ++ + + +P Sbjct: 976 AGQYSLANSLAVTHAADRVLLLGDPQQLPQVSQGTHPEPINESALSWLVEGHPIVPEHRG 1035 Query: 249 KRYQIDTRTVEGIDSG 264 R + Sbjct: 1036 FFLDHTWRMHPDLTYP 1051 >gi|195145936|ref|XP_002013946.1| GL23119 [Drosophila persimilis] gi|194102889|gb|EDW24932.1| GL23119 [Drosophila persimilis] Length = 1395 Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 42/157 (26%), Gaps = 8/157 (5%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + G+GKT + A +M P II +A + + +++ ++P Sbjct: 76 NTLVVLPTGLGKTFIAAVVMYNFYRWYPQGKIIFMAPTRPLVAQ----QIAACQKIMPFP 131 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 +Q A+L + + D + D Sbjct: 132 GSDTVQLTGQLARPKRAQLWASKRVFFATPQVVHS---DMLETDDGAYFPFGAIKLLVVD 188 Query: 199 EAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 EA + NPN + S T Sbjct: 189 EAHRAKGRYAFTQVADCMMAHNPNFRMLALSATPGRT 225 >gi|159899100|ref|YP_001545347.1| cell divisionFtsK/SpoIIIE [Herpetosiphon aurantiacus ATCC 23779] gi|159892139|gb|ABX05219.1| cell divisionFtsK/SpoIIIE [Herpetosiphon aurantiacus ATCC 23779] Length = 2947 Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 41/358 (11%), Positives = 86/358 (24%), Gaps = 58/358 (16%) Query: 8 DQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCH 67 +KL +EL + + + + V F G WQ Sbjct: 462 SRKLAEELSTLNLRQSAGANLADAVAFFDLMGYSSLDELKVDALKNWQRSIQPKYANWLR 521 Query: 68 SNVNNSNPTIFKCAI------------SAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 + V + + + + G GK+ L ++ + T + + Sbjct: 522 AKVGRMSGNKARTLVFSAKKDGVHGMVAGSTGSGKSELLISLIAVMAVTYDPSVVNFV-- 579 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 L + K LPH + + + + + + Sbjct: 580 ----LVDYKGGGAFKEFERLPHCVDIITNLAGDGVTRMFTAIKSEMQRRQVLNNETDTKN 635 Query: 176 YSEERPDTFVGPHNTHG-MAVFNDEASGT--PDIINKSILGFFTELNPNRFWIMTSNTRR 232 E R F H + + + DE + + L T + + + +R Sbjct: 636 IVEYRKKNFHTTHYPYPYLFIIIDEFAEMIADRAEYRGELESITRIGRSLGVSLILAAQR 695 Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF-PQQ 291 +G + + F + +S F P Sbjct: 696 PSGITDQM-------------------RSNIKFRISLRVETQGESREMLRRSDAAFLPTG 736 Query: 292 EVNNFI------PHNYIEEAMSREAIDDLY----APLIM-------GCDIAGEGGDKT 332 I+ A + + D +I G D + D++ Sbjct: 737 IPGRGYLQVGNEEIELIQVAYTGDPYVDPNSVSQEKVIWPDRRRAEGVDPGIDTQDQS 794 >gi|284053201|ref|ZP_06383411.1| helicase-like protein [Arthrospira platensis str. Paraca] Length = 1044 Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 34/280 (12%), Positives = 68/280 (24%), Gaps = 36/280 (12%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 QL+ + V + ++ G+GKT ++ +L+ + ++ +A Sbjct: 299 QLKILRRVAETFPRSFLIADEV----------GLGKTVETGAILRYLLVSGRVKRVLVLA 348 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 + Q + W E + W Q P G + + E + + Sbjct: 349 PASVQSQ---WHEELR--EKFNLHFWSYGQKEFKDPYGAVSTVREAENPWNRHPLIVASS 403 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP--------DIINKSILGFFTELNPNRFWIM 226 R + V DEA D N + + R ++ Sbjct: 404 HLVRRRERSQELLAAEPWDLVVLDEAHHARRRTPKAHQDTPNSLLELMGQLRDRTRSLLL 463 Query: 227 TSNTRRLNGWF-----------YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275 S T Y + + + + F + + Y Sbjct: 464 LSATPMQIDAIEVFDLLELLGLYGHWRYGENFCDYFASLSEPPDPFILEFWQNMSVDYFR 523 Query: 276 DSDVARIEILGQFPQQEVNNF-IPHNYIEEAMSREAIDDL 314 + G F I + R Sbjct: 524 GGGEPCSRLQG-FLGDRDRLLSYKLQDIWQRGQRMVNPKQ 562 >gi|281204972|gb|EFA79166.1| hypothetical protein PPL_07991 [Polysphondylium pallidum PN500] Length = 1587 Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 62/222 (27%), Gaps = 20/222 (9%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI--STRPGMS--- 109 Q + + S + G GKT A M+L ++ R Sbjct: 1044 QNVDLRLSLTDSQLGIVKSIVQRRLQLVVGPPGTGKTHFLALMVLIIMETLIRAEKKSYI 1103 Query: 110 IICIANSETQLKNTLWA--EVSKWLSMLP----HRHWFEMQSLSLHPSGWYAELLEQSMG 163 I A++ T + N L E+ K + + +S L S +++ Sbjct: 1104 IAITAHTHTAIDNLLVRIAELKKEYESFAGNALNFQIVKKESSKLSESLTSHNIVKYDKK 1163 Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223 I + + DEAS P + L Sbjct: 1164 HKFNLMCIGSTCWGLNTL-------GLDLDMLIIDEASQLPSPLAALGLNAVNLEKSRV- 1215 Query: 224 WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265 ++ + ++L F + + +++ + + S F Sbjct: 1216 -VVVGDPKQLGPVLKASFIVRKDLSVSDKLEHQEPKFHKSIF 1256 >gi|239996950|ref|ZP_04717474.1| hypothetical protein AmacA2_21103 [Alteromonas macleodii ATCC 27126] Length = 753 Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 39/137 (28%), Gaps = 13/137 (9%) Query: 68 SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127 + I+A RG GK++L + R G +++ + +KN L Sbjct: 209 RLYQAHSLNKLNALITAPRGRGKSSLLGIFI--ESLIRQGKNVLLTSERFDNVKNVLSRI 266 Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187 + + R + + + G + Y+ E Sbjct: 267 --QQYEIAGVRTQQPSTANIQTQLILGDKNEAATFGSVKWVPPDSALLYTTED------- 317 Query: 188 HNTHGMAVFNDEASGTP 204 V DEA+ P Sbjct: 318 --EKYDVVIVDEAASIP 332 >gi|242018331|ref|XP_002429631.1| DNA replication helicase DNA2, putative [Pediculus humanus corporis] gi|212514610|gb|EEB16893.1| DNA replication helicase DNA2, putative [Pediculus humanus corporis] Length = 1157 Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 18/162 (11%), Positives = 48/162 (29%), Gaps = 9/162 (5%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 + ++ ++ V S I G GKT A ++ ++ G +++ ++ Sbjct: 718 KILKKLNKEQQKAVVKSILCNEYLLIKGPPGTGKTETTASLVKVFLAL--GKTVLIAGHT 775 Query: 117 ETQLKNTLWAEVS-KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 + + N L ++L + P + ++ + + I Sbjct: 776 HSSVDNILLRLSDVEYLRLGPLKSIKKILHDKSFSKLIENCGSAEDVRKLYDRKVIASTC 835 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217 + DE+S + ++ + F Sbjct: 836 LGLDS----DFIAKKKFDVCIVDESSQV--LQSEILRPLFCS 871 >gi|194043541|ref|XP_001927668.1| PREDICTED: probable ATP-dependent RNA helicase DDX60 [Sus scrofa] Length = 1704 Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 27/199 (13%), Positives = 51/199 (25%), Gaps = 27/199 (13%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P WQ E ++ VD + + I A GKT + + M ++ + Sbjct: 757 PDTWQRELLDVVDKNESA------------VIVAPTSSGKTYASYYCMERVLREGDDGVV 804 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + +A ++ + +++ LP + + + L + I Sbjct: 805 VYVAPTKALVNQVAATVQNRFRKNLPDGEAL----CGVFTRDYRHDALNSQILITVPACF 860 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEAS----GTPDIINKSILGFFTELNPNRFWIM 226 R V DE I + +L Sbjct: 861 EILLLA-PHRQAWVKRIR-----YVIFDEVHCLGGEIGAEIWEHLLVMIRCP-FLALSAT 913 Query: 227 TSNTRRLNGWFYDIFNIPL 245 SN L W + Sbjct: 914 ISNPEHLTEWLQSVKRYWK 932 >gi|84687759|ref|ZP_01015631.1| Possible DNA helicase [Maritimibacter alkaliphilus HTCC2654] gi|84664260|gb|EAQ10752.1| Possible DNA helicase [Rhodobacterales bacterium HTCC2654] Length = 1569 Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 20/236 (8%), Positives = 66/236 (27%), Gaps = 20/236 (8%) Query: 10 KLEQELHEMLMHAECVLSFK-----NFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64 + + ++ + + +F+ + P + + P + E ++ + Sbjct: 900 YAAKGMEDIETAQKLAHDYFAMDEADFMKAWMPGRM--SEFRRQATPQTY-AEIVDDLGN 956 Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI-STRPGMSIICI----ANSETQ 119 + + + + AG G GKT + + +L+ R + I + ++ + Sbjct: 957 TTQAQIVRDDREQTNVLVLAGPGSGKTRVLVHRVAYLVRIKREDPNGILVLAYNRHAAAE 1016 Query: 120 LKNTLWAEV---SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 ++ L + ++++++L + AE + + + Sbjct: 1017 IRERLRRLIGDDARFVTVLTIHALAMRLVGASFAGRAGAETPDFDTLLTDAARLLRGDGL 1076 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG----FFTELNPNRFWIMTS 228 + + + DE I + + Sbjct: 1077 DKVEAEALRETLIQGFRWILVDEYQDVGPEEYALIAAVAGRSIDDPDQRISLFAVG 1132 >gi|319788397|ref|YP_004147872.1| DNA helicase II [Pseudoxanthomonas suwonensis 11-1] gi|317466909|gb|ADV28641.1| DNA helicase II [Pseudoxanthomonas suwonensis 11-1] Length = 726 Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 35/270 (12%), Positives = 69/270 (25%), Gaps = 26/270 (9%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + AG G GKT + + WL + L T +K + R Sbjct: 27 VLAGAGSGKTRVLTHRIAWLNEVH-------GVPAHGILAVTF---TNKAAGEMRSRADM 76 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 ++++ S + + + ++ D + DE Sbjct: 77 QLRNGSRGMWIGTFHGIAHRLLRLHWNEARLPESFQVLDSDDQQRLVKRVVQQLELDE-G 135 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI 261 P + + I N ++ YQ + Sbjct: 136 RFPPRQITWWINAQKDEGRRPQHIQAVNDP--------WTESMRRAYELYQERCDRAGLV 187 Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMG 321 D D+ +F + ++ F N I+ A R D ++ Sbjct: 188 DFAELLLRAHELLRDNPALLQHYRTRFRELLIDEFQDTNAIQYAFVRVLAGDTGRVFVV- 246 Query: 322 CDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 G D + RG +E++ + Sbjct: 247 ------GDDDQAIYGWRGAKVENVQQFLRD 270 >gi|299755713|ref|XP_001828834.2| DNA ATP-dependent helicase [Coprinopsis cinerea okayama7#130] gi|298411348|gb|EAU92841.2| DNA ATP-dependent helicase [Coprinopsis cinerea okayama7#130] Length = 1625 Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 26/276 (9%), Positives = 64/276 (23%), Gaps = 28/276 (10%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 +QL+ + + +N G+GKT + ++ +L T Sbjct: 773 EYQLKGLNWLATLYEQGINGILADEM--------GLGKTVQSISLLAYLAETHDIWGPFL 824 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 + + L N E+++++ L ++ ++ + Sbjct: 825 VVAPASTLHN-WQQEITRFVPNLRALPYWGNVKDRTTLR---KVWSKKDLTYTKDAPFHV 880 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232 T + + DEA + + ++T Sbjct: 881 LITSYQLVTQDQQYFQRIKWQYMILDEAQNIKNSS-SVRWKTLLGFHCRNRLLLTGTP-- 937 Query: 233 LNGWFYDIFNIPLEDW---KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 I N E W + + I + E Sbjct: 938 -------IQNSMQELWALLHFIMPSLFDSHDEFNEWFSKDIENAAENKGSKLNEHQ---L 987 Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325 ++ P + + + D++ Sbjct: 988 RRLHMILKPFMLRRVKRHVQNELSEKIEIDIFVDLS 1023 >gi|223039222|ref|ZP_03609512.1| CRISPR-associated helicase Cas3 [Campylobacter rectus RM3267] gi|222879583|gb|EEF14674.1| CRISPR-associated helicase Cas3 [Campylobacter rectus RM3267] Length = 753 Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 56/183 (30%), Gaps = 19/183 (10%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 +++ + E + + + N K I A GIGKT L + L + + + Sbjct: 226 KYRTKAKELIFQNFNHNTQKD-----KFLIKAPTGIGKTFLALNLALQIAKIKGDKRRVI 280 Query: 113 IANSETQLKNTLWAEVSKWL---SMLPHRHWFEMQSLSL-HPSGWYAELLEQSMGIDSKH 168 A T + + E K + ++L + H +S + E + + Sbjct: 281 TAIPFTSIIDQTHNEYQKIISDQNVLKYHHLTSYKSSKIDKEKDNEDEQEQFMQKVFLAD 340 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAV----------FNDEASGTPDIINKSILGFFTEL 218 + +V N + + DE P ++ K I F E Sbjct: 341 IWHENFIVTTFNQLFYVFFSNHNRDNLKLETLRDSVIIIDEIQNIPRVLLKPISAAFNEF 400 Query: 219 NPN 221 Sbjct: 401 TKR 403 >gi|68487366|ref|XP_712454.1| hypothetical protein CaO19.8783 [Candida albicans SC5314] gi|68487658|ref|XP_712310.1| hypothetical protein CaO19.1192 [Candida albicans SC5314] gi|46433687|gb|EAK93119.1| hypothetical protein CaO19.1192 [Candida albicans SC5314] gi|46433842|gb|EAK93270.1| hypothetical protein CaO19.8783 [Candida albicans SC5314] Length = 1426 Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 21/167 (12%), Positives = 47/167 (28%), Gaps = 18/167 (10%) Query: 38 WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97 W I + Q+ ++ V ++ P G GKTT+ A + Sbjct: 959 WEIPDAETFNPD-----QIAALKKVFSADDYSLIVGMP-----------GTGKTTVIAQL 1002 Query: 98 MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 + L++ R S++ + + + + N L + L + + + + Sbjct: 1003 IKVLVAQR--KSVLLTSYTNSAVDNILLKLKDLDIEFLRIGYPQRVHKDIKDYIPEFKDS 1060 Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + + + DEAS Sbjct: 1061 ITTYEQYVNTYMRPKVIATTCLSITDVCFNLRYSFDYCIVDEASQIT 1107 >gi|296819731|ref|XP_002849895.1| DEAD/DEAH box helicase [Arthroderma otae CBS 113480] gi|238840348|gb|EEQ30010.1| DEAD/DEAH box helicase [Arthroderma otae CBS 113480] Length = 1829 Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 14/222 (6%), Positives = 58/222 (26%), Gaps = 31/222 (13%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +P +WQ + ++ +D + + A GKT ++ + M ++ Sbjct: 820 EPDKWQRDVLDEIDAN------------RSLFVVAPTSAGKTFISFYAMKKVLQQDDNGV 867 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ +A ++ + +++ H ++H + + + + Sbjct: 868 LVYVAPTKALVNQVAAEIQARFSKSFKHGGKSVW---AIHTRDYRINNPTGCQVLVTIPH 924 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF------------TE 217 + + ++ + + DE + + Sbjct: 925 ILQIMLLAPANATSW----SCRVKRIIFDEIHCIGQADDGVVWEQLLLLAPCPIIALSAT 980 Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 + + + ++ + + + Sbjct: 981 VGNPQAFYKWLSSTQRANGIDITMVEHRHRYSDLRKYVYKPP 1022 >gi|182625300|ref|ZP_02953074.1| putative phage terminase, large subunit [Clostridium perfringens D str. JGS1721] gi|177909458|gb|EDT71905.1| putative phage terminase, large subunit [Clostridium perfringens D str. JGS1721] Length = 548 Score = 42.2 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 27/197 (13%), Positives = 52/197 (26%), Gaps = 13/197 (6%) Query: 54 WQLEFMEAVD--VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML--WLISTRPGMS 109 WQ F+EA+ V GR GKT + + L W G Sbjct: 57 WQKAFVEAIFSIKIYDDEVGRYVRKYQDVLFLVGRKNGKTPFISAICLAEWFCGEM-GKK 115 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I+C +N+ Q L A + + + + +K Sbjct: 116 ILCASNNYEQAGLMLDAMDAMREESPRLEKVTRKTVKGIFFGNPKQKKKKGKFTRQNKGC 175 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSILGFFTELNPNRFWIMTS 228 + + + DE D I + + + ++ +T+ Sbjct: 176 IKKISAKTGAKE-------GRNIGIGAVDEVFEMKDDSIVMPVRQALSTQDEPLYFELTT 228 Query: 229 NTRRLNGWFYDIFNIPL 245 +G+ + Sbjct: 229 EGFTNDGYLDERLIEAR 245 >gi|332022731|gb|EGI63007.1| Putative U5 small nuclear ribonucleoprotein 200 kDa helicase [Acromyrmex echinatior] Length = 2115 Score = 42.2 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 25/219 (11%), Positives = 51/219 (23%), Gaps = 28/219 (12%) Query: 48 FSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107 F Q + Q + A+ + A G GKTT+ + +L L++ P Sbjct: 1300 FPQFNPIQTQVFNAIYNSDD-----------NVFVGAPTGSGKTTIAEFAVLRLLTQNPE 1348 Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 + + + E + + W + F Q + + + Sbjct: 1349 GRCVYMVSKEALAELVY----ADWAAK------FGQQLGRKVVLLSGETGTDLKLLAKGQ 1398 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL-------NP 220 T + + + DE + + + Sbjct: 1399 IIITTADKWDVLSRRWKQRKNVQNIQLFIVDELQLIGGEEGPVLEVACSRARYISSQLDK 1458 Query: 221 NRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 I S + P + R V Sbjct: 1459 PTRIIALSASLADAKDAAQWLGAPAAATFNFHPTVRPVP 1497 >gi|327349688|gb|EGE78545.1| DEAD/DEAH box helicase [Ajellomyces dermatitidis ATCC 18188] Length = 1904 Score = 42.2 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 28/303 (9%), Positives = 74/303 (24%), Gaps = 51/303 (16%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +P WQ + ++ +D + + A GKT ++ + M ++ Sbjct: 839 EPDAWQRQVLDEIDGN------------RSLFVVAPTSAGKTFISFYAMKRILEDDDNSV 886 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ +A ++ + +++ H + + + + + Sbjct: 887 LVYVAPTKALVNQVAAEIQARFSKSFKHGGKSVWGIHTRDYRINNPTGCQVLVTV---PH 943 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM--- 226 + + ++ ++ + DE + + L P + Sbjct: 944 ILQIMLLAPANASSW----SSRVKRIIFDEIHCIGQVEEGVVWEQLLLLAPCPIIALSAT 999 Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 N + + W D + R + + + D Sbjct: 1000 VGNPQAFSNWLNMTQKANGIDLTMIEHRHRYSDLRKYVYKPPKKFHFNGLPDSVPFA--- 1056 Query: 287 QFPQQEVNNF-----------------IPHNYIEEAMSREAIDDLYAPLIMG-------C 322 P N F +P + EA + + Sbjct: 1057 --PTSLDNAFGMAFMHPVACIVDRLRGMPEDLTLEARDCWLLWNAMKKYQTADFPVPKSL 1114 Query: 323 DIA 325 D A Sbjct: 1115 DPA 1117 >gi|239615191|gb|EEQ92178.1| DEAD/DEAH box helicase [Ajellomyces dermatitidis ER-3] Length = 1901 Score = 42.2 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 28/303 (9%), Positives = 74/303 (24%), Gaps = 51/303 (16%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +P WQ + ++ +D + + A GKT ++ + M ++ Sbjct: 836 EPDAWQRQVLDEIDGN------------RSLFVVAPTSAGKTFISFYAMKRILEDDDNSV 883 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ +A ++ + +++ H + + + + + Sbjct: 884 LVYVAPTKALVNQVAAEIQARFSKSFKHGGKSVWGIHTRDYRINNPTGCQVLVTV---PH 940 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM--- 226 + + ++ ++ + DE + + L P + Sbjct: 941 ILQIMLLAPANASSW----SSRVKRIIFDEIHCIGQVEEGVVWEQLLLLAPCPIIALSAT 996 Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 N + + W D + R + + + D Sbjct: 997 VGNPQAFSNWLNMTQKANGIDLTMIEHRHRYSDLRKYVYKPPKKFHFNGLPDSVPFA--- 1053 Query: 287 QFPQQEVNNF-----------------IPHNYIEEAMSREAIDDLYAPLIMG-------C 322 P N F +P + EA + + Sbjct: 1054 --PTSLDNAFGMAFMHPVACIVDRLRGMPEDLTLEARDCWLLWNAMKKYQTADFPVPKSL 1111 Query: 323 DIA 325 D A Sbjct: 1112 DPA 1114 >gi|261192386|ref|XP_002622600.1| DEAD/DEAH box helicase [Ajellomyces dermatitidis SLH14081] gi|239589475|gb|EEQ72118.1| DEAD/DEAH box helicase [Ajellomyces dermatitidis SLH14081] Length = 1901 Score = 42.2 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 28/303 (9%), Positives = 74/303 (24%), Gaps = 51/303 (16%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +P WQ + ++ +D + + A GKT ++ + M ++ Sbjct: 836 EPDAWQRQVLDEIDGN------------RSLFVVAPTSAGKTFISFYAMKRILEDDDNSV 883 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ +A ++ + +++ H + + + + + Sbjct: 884 LVYVAPTKALVNQVAAEIQARFSKSFKHGGKSVWGIHTRDYRINNPTGCQVLVTV---PH 940 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM--- 226 + + ++ ++ + DE + + L P + Sbjct: 941 ILQIMLLAPANASSW----SSRVKRIIFDEIHCIGQVEEGVVWEQLLLLAPCPIIALSAT 996 Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 N + + W D + R + + + D Sbjct: 997 VGNPQAFSNWLNMTQKANGIDLTMIEHRHRYSDLRKYVYKPPKKFHFNGLPDSVPFA--- 1053 Query: 287 QFPQQEVNNF-----------------IPHNYIEEAMSREAIDDLYAPLIMG-------C 322 P N F +P + EA + + Sbjct: 1054 --PTSLDNAFGMAFMHPVACIVDRLRGMPEDLTLEARDCWLLWNAMKKYQTADFPVPKSL 1111 Query: 323 DIA 325 D A Sbjct: 1112 DPA 1114 >gi|332291697|ref|YP_004430306.1| type III restriction protein res subunit [Krokinobacter diaphorus 4H-3-7-5] gi|332169783|gb|AEE19038.1| type III restriction protein res subunit [Krokinobacter diaphorus 4H-3-7-5] Length = 887 Score = 42.2 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 23/203 (11%), Positives = 48/203 (23%), Gaps = 38/203 (18%) Query: 32 VMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT 91 +PW +Q F++ H + + + A G GKT Sbjct: 6 FHFIYPW-------------RTYQERFLKDFKSHASDDHLH---------VVAPPGSGKT 43 Query: 92 TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151 L MM R + +A + T + + + ++ S Sbjct: 44 VLGLEMM-----RRVNEKTLVLAPTIT---------IRNQWEQRMFECFVSEEDCTIPLS 89 Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211 E + + + + + DEA + K + Sbjct: 90 RNIKEPAHITFATYQSLHAFSKNEMEGDMDRLVAFFAEAGIKHIVLDEAHHLKNEWWKPL 149 Query: 212 LGFFTELNPNRFWIMTSNTRRLN 234 +T+ + Sbjct: 150 FALKKLEG--TLTALTATPPYDS 170 >gi|296453256|ref|YP_003660399.1| DNA repair helicase Rad25 [Bifidobacterium longum subsp. longum JDM301] gi|296182687|gb|ADG99568.1| DNA repair helicase Rad25 [Bifidobacterium longum subsp. longum JDM301] Length = 1068 Score = 42.2 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 34/221 (15%), Positives = 64/221 (28%), Gaps = 35/221 (15%) Query: 16 HEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFS-QPHRWQLEFMEAVDVHCHSNVNNSN 74 + FK P + LE QP+ Q E + + + Sbjct: 221 LTEEWIKQYEEDFK---KYAPPRHEILQSLEGHDIQPNAMQQEALANLKKIREQGEH--- 274 Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 + I + G GKT L+A + + ++ IA Q + L + + + Sbjct: 275 ----RAIIVSATGTGKTYLSA----FDVRECQPKRMLYIA----QQQMILQTAMKSYQKV 322 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 L S D ++ T +T +P+ + Sbjct: 323 LGCD------------ESELGLYSGTSKQQDRRYVFATVQTMR--QPEVLAQFKSDEFDY 368 Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 V DE + ++ F + + MT+ R +G Sbjct: 369 VLVDEVHHAGAEGYQRVINHFKDAD--FMLGMTATPERTDG 407 >gi|213406579|ref|XP_002174061.1| helicase SWR1 [Schizosaccharomyces japonicus yFS275] gi|212002108|gb|EEB07768.1| helicase SWR1 [Schizosaccharomyces japonicus yFS275] Length = 1603 Score = 42.2 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 28/254 (11%), Positives = 65/254 (25%), Gaps = 26/254 (10%) Query: 22 AECVLSFKNFVMRFFPWG-IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKC 80 AE NF G +P + +QL+ + + +N Sbjct: 816 AEMNEDELNFQNPTMVNGMEIEQPKMLMCKLKEYQLKGLNWLANLYEQGINGILADEM-- 873 Query: 81 AISAGRGIGKTTLNAWMMLWLISTRP---GMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 G+GKT + +M +L T +I A++ E+++++ L Sbjct: 874 ------GLGKTVQSISVMAYLAETHNIWGPFLVIAPASTLHN----WQQEITRFVPKLKC 923 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 ++ + ++++ T + + + Sbjct: 924 IPYWGSMKDRKILRKF---WCKKNLTYSEDSPFHVVVTSYQLVVSDAQYFQSMKWQYMIL 980 Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257 DEA S ++T + +++ + Sbjct: 981 DEAQAIKSSS-SSRWKSLLAFKCRNRLLLTGTP--IQNTMQELWALL----HFIMPTLFD 1033 Query: 258 VEGIDSGFHEGIIS 271 S + I Sbjct: 1034 SHNEFSEWFSKDIE 1047 >gi|154340597|ref|XP_001566255.1| mitochondrial DEAD box protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134063574|emb|CAM39757.1| putative mitochondrial DEAD box protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 544 Score = 42.2 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 26/177 (14%), Positives = 46/177 (25%), Gaps = 20/177 (11%) Query: 43 KPLEHFSQPH---RWQLEFMEAV----DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95 PL F++ RW E + A+ A G GKT A Sbjct: 89 TPLASFAELRDAPRWLAEGLRALKYPSTTDIQKFTIPLLADGHDVIGLAPTGSGKTVAFA 148 Query: 96 WMMLWLISTRPGMS--IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153 L P + ++ +A + ++ T K L ++ P Sbjct: 149 VPALAAFKRNPDGTPSVLVLAPTRELVQQTT-----KVFQSLGCGQVRVCEAYGGAPRDL 203 Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS 210 A L + + + + + DEA D+ + Sbjct: 204 QARCLR------NGCDALVACPGRLKDFLDSGELSIRNLSFLVFDEADRLLDMGFQV 254 >gi|195437039|ref|XP_002066452.1| GK18288 [Drosophila willistoni] gi|194162537|gb|EDW77438.1| GK18288 [Drosophila willistoni] Length = 1051 Score = 42.2 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 35/328 (10%), Positives = 78/328 (23%), Gaps = 45/328 (13%) Query: 40 IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99 + + F W + + N+ I G GKT +L Sbjct: 538 NEKYEMFLFDSKIDWYNPLLNDIQKQAVFNILRGESDNMPYIIFGPPGTGKTVTMIETIL 597 Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEV------SKWLSMLPHRHWFEMQSLSLHPSGW 153 ++ P ++ S L + + + ++ E S+ + + Sbjct: 598 QIMHCLPQSRLLVATPSNMAADLILQRILDSGSVPKDQIIRMVSQNQIEKDSIPENLKSY 657 Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH-------------------NTHGMA 194 L + G T F+G + H Sbjct: 658 CGTLDLSASGTMGTMEEATTSGMRLGCKKDFIGRRRVTVSTCTTMGSLLQLQFPSGHFTH 717 Query: 195 VFNDEASGTPDIINKSILGFFT--------ELNPNRFWIMTSNTRRLNGWFYD------- 239 V DEA + + + + +P + + N+ + Sbjct: 718 VLVDEAGQCTEPETITPIALLSRKRSQVILSGDPYQLQPVIVNSFSAANGYCKSFLERVL 777 Query: 240 IFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299 F +D R+ + + + G S + + + I P Sbjct: 778 EFEPYSKDLNRFPTTSGYNPFVVTKLLNGYRSLPSIMTLYSEIFYDNDLISNVSATDSPQ 837 Query: 300 NYIEEAMSREAIDD-----LYAPLIMGC 322 + + D + + +G Sbjct: 838 EKVLAKVQGIFPPDSKMSPSHGVVFIGV 865 >gi|38154332|gb|AAR12152.1| UL89 [Human herpesvirus 5] Length = 79 Score = 42.2 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 1/74 (1%) Query: 186 GPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIP 244 + + DEA +ILGF + +I ++NT F + N P Sbjct: 1 SIRGQNFHLLLVDEAHFIKKEAFNTILGFLAQNTTKIIFISSTNTTSDATCFLTRLNNAP 60 Query: 245 LEDWKRYQIDTRTV 258 + Sbjct: 61 FDMLNVVSYVCEEH 74 >gi|2909851|gb|AAC40814.1| UL89 protein [human herpesvirus 5] Length = 378 Score = 42.2 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 1/74 (1%) Query: 186 GPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-DIFNIP 244 + + DEA +ILGF + +I ++NT F + N P Sbjct: 1 SIRGQNFHLLLVDEAHFIKKEAFNTILGFLAQNTTKIIFISSTNTTSDATCFLTRLNNAP 60 Query: 245 LEDWKRYQIDTRTV 258 + Sbjct: 61 FDMLNVVSYVCEEH 74 >gi|15668850|ref|NP_247653.1| DEAD-box ATP dependent DNA helicase [Methanocaldococcus jannaschii DSM 2661] gi|2500540|sp|Q58083|H669_METJA RecName: Full=Probable ATP-dependent RNA helicase MJ0669 gi|1591383|gb|AAB98663.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Methanocaldococcus jannaschii DSM 2661] Length = 367 Score = 42.2 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 18/198 (9%), Positives = 45/198 (22%), Gaps = 25/198 (12%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 F +P Q++ + + A G GKT A ++ L++ Sbjct: 25 GFEKPTDIQMKVI-----------PLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENN 73 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 G+ I + + + + L ++ + + + + Sbjct: 74 GIEAIILTPTRELAIQV-----ADEIESLKGNKNLKI------AKIYGGKAIYPQIKALK 122 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFF--TELNPNRF 223 + + + DEA K + + Sbjct: 123 NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRIL 182 Query: 224 WIMTSNTRRLNGWFYDIF 241 + R + Sbjct: 183 LFSATMPREILNLAKKYM 200 >gi|323127628|gb|ADX24925.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 366 Score = 42.2 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 31/318 (9%), Positives = 70/318 (22%), Gaps = 56/318 (17%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIF---KCAISAGRGIGKTTLNAWMMLWLISTRPG 107 P +WQ + + H + IF + G GKT + L ++ + Sbjct: 6 PPQWQEKLDQVAFTHLTPIQEQAFQPIFDGKNLLGVSPTGTGKTLAYLFPTLLTLTPKKS 65 Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 ++ +A + + +W L + S + Sbjct: 66 QQLLILAPNTELAGQI-FEVAKEWAEPLGLTAQLFISGTSQKRQIE---------RLKKG 115 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS----------------GTPDIINKSI 211 + + DE P Sbjct: 116 SEILIGTPGRIFELIKLKKIKMMSVNTIILDEYDELLSDSQYDFVQRISRYVPRDHQMVY 175 Query: 212 LGFF-----TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFH 266 + T L N I S + + E + F Sbjct: 176 MSATNKVDQTSLEENTLLIDLSEQTNDAIQHFYLMTDKRERTDLLRKFANIPHFRALVFF 235 Query: 267 EGIISRYGLDSDV-----------------ARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309 + + + R IL +F +++ + + + + + Sbjct: 236 NSLSDLGATEERLQYNGAAAVSLASDINVKFRKTILEKFKSHQLSLLLATDLVARGIDID 295 Query: 310 AIDDLYAPLIMGCDIAGE 327 ++ D+A + Sbjct: 296 -----NLDYVIHFDVARD 308 >gi|331236920|ref|XP_003331118.1| helicase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309310108|gb|EFP86699.1| helicase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1410 Score = 42.2 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 22/162 (13%), Positives = 45/162 (27%), Gaps = 27/162 (16%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI----STRP 106 P +Q E +E I A G GKT + ++ W + Sbjct: 42 PRLYQTELLEE-------------AKKRNIIIRADTGTGKTIVAVNLIAWTAVKTKANNK 88 Query: 107 GMSI-ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 I + + + K ++ + ++Q + W++EL E + Sbjct: 89 NHQIQAFLVPTRPLAHQQA-EYIQKHCTLRIKAYTGDLQPELWNIRKWHSELNEVDV--- 144 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207 T + + + + + DEA Sbjct: 145 ---LVSTAQIFYDLISKGYWKL--EDVSLLIFDEAHHCRKNH 181 >gi|295400221|ref|ZP_06810201.1| NERD domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|312110527|ref|YP_003988843.1| UvrD/REP helicase [Geobacillus sp. Y4.1MC1] gi|294978000|gb|EFG53598.1| NERD domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|311215628|gb|ADP74232.1| UvrD/REP helicase [Geobacillus sp. Y4.1MC1] Length = 639 Score = 42.2 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 36/252 (14%), Positives = 66/252 (26%), Gaps = 12/252 (4%) Query: 46 EHFSQPHRWQLEFMEAVDVHC-----HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 F P +Q + + ++ N+ + I G GKT + A Sbjct: 212 AEFRPPVPYQDQILLSLHDIKAMDLHQENLAKQIGDKHRL-IRGVAGSGKTLILASRAKL 270 Query: 101 LISTRPGMSIICIANSETQLKNT--LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 L P I+ + + + + L + + L + + L+ G Sbjct: 271 LAKEHPDWKILILCYNISLAQGIRQLINHMLREPDSLFDFDFTKHDGLADTAYGQIIVRN 330 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218 T Y E+ + A+ DE I Sbjct: 331 FHEWLKHDLKITEQQIPYILEKLEKGEAI-LPTYDAILVDEGQDFSSDWLALISKLLNPE 389 Query: 219 NPNRFWI---MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275 + + + RR + D K I+ R I + + L Sbjct: 390 TQSLLLVEDRAQTIYRRKRSYAQDTGLNFQGRSKILTINYRNTAQIVKFAWDFYRTHSVL 449 Query: 276 DSDVARIEILGQ 287 + VA E G+ Sbjct: 450 KNKVAHREFEGE 461 >gi|162329381|ref|YP_001604182.1| putative helicase [Acidianus filamentous virus 6] gi|157310758|emb|CAJ31578.1| putative helicase [Acidianus filamentous virus 6] Length = 564 Score = 42.2 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 33/236 (13%), Positives = 65/236 (27%), Gaps = 34/236 (14%) Query: 10 KLEQELHEMLMHAECVLSFKNFVMR-FFPWGIKGKPLEHFSQPHRWQLE-------FMEA 61 E+E+ + + F W + Q + Sbjct: 128 YNEEEIL-LAWE-----HYDYFTTYRGLYWKLLNISEIRLQPFTNLQYHDITLKNFELRE 181 Query: 62 VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121 ++ + N I + I A G GK+ ++ L ++ + II NS T LK Sbjct: 182 YQINSIKSWINDVNIIGEGIIKAPTGAGKSVISILATLEMLKNKRNPKIIYAVNSTTLLK 241 Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 F + + + YS+++ Sbjct: 242 Q---------------FQQFAKKEDLNFAIVSGELNELKKEKDSNLIALSISYYYSQKKR 286 Query: 182 DTFVGPHN--THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 + + + + + DEA TP SI + + +T+ R +G Sbjct: 287 NKYNELRDIVNNADLIIVDEAHHTP---ANSIKALLLDSPGSIRLGLTATPFREDG 339 >gi|47214668|emb|CAG00904.1| unnamed protein product [Tetraodon nigroviridis] Length = 447 Score = 42.2 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 21/191 (10%), Positives = 48/191 (25%), Gaps = 10/191 (5%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVN-NSNPTIFK-CAISAGRGIGKTTLNAWMMLWLIST 104 Q E + A+ + + +SA G GKT ++ ++ Sbjct: 45 GIDHFFPVQAEVIPAILEAAQQGLLIGRGGYRPRDICVSAPTGSGKTLAFVIPVVQVLMQ 104 Query: 105 RPGMSIICIA--NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162 R + +A ++ + + S + R SL + Sbjct: 105 RVVCHVRALAVLPTKELAQQV-YKVFSAYAEGTSLRVLVLAGQRSLSAEQASLSEYRAGV 163 Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII-----NKSILGFFTE 217 + + + G + DEA D + ++ + + Sbjct: 164 RRSQADIIVATPGRLVDHINKKSGLKLDQLRFLIIDEADRMIDSMHQAWLSQVVKATYGT 223 Query: 218 LNPNRFWIMTS 228 + S Sbjct: 224 GGGREASSIFS 234 >gi|86136246|ref|ZP_01054825.1| hypothetical protein MED193_19024 [Roseobacter sp. MED193] gi|85827120|gb|EAQ47316.1| hypothetical protein MED193_19024 [Roseobacter sp. MED193] Length = 1121 Score = 42.2 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 29/200 (14%), Positives = 53/200 (26%), Gaps = 19/200 (9%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS----MLPH 137 I G GKT ++A +L R G + +NS ++N L VS +P Sbjct: 741 IQGPPGTGKTYVSARAIL--SLVRKGYRVGVASNSHEAIRNVLMGCVSAVEEGVQTEMPD 798 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 +P G + + + + + R + +F Sbjct: 799 LVHKVPSDNDGYPDGCAVRRTKSNDEAAAGGDVVGGTAFFFAREENIQAF-----DWLFV 853 Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK--RYQIDT 255 DEA + R ++ + ++L P + Sbjct: 854 DEAGQV------GLANMAAMGRSARNIVLVGDPQQLPQVIQGAHPEPANLSCLQWMLGEH 907 Query: 256 RTVEGIDSGFHEGIISRYGL 275 TV F + Sbjct: 908 ATVPADRGIFLATTRRMHPE 927 >gi|331231179|ref|XP_003328253.1| DNA replication helicase Dna2 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309307243|gb|EFP83834.1| DNA replication helicase Dna2 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1326 Score = 42.2 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 43/118 (36%), Gaps = 3/118 (2%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTT A ++ LI G +++ + + + + N L V + ML + ++ S Sbjct: 840 GTGKTTTIAELIKTLIGM--GKTVLLTSYTHSAVDNILSKLVDSKIDMLRLGNVDKVSSA 897 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + ++ + ++ K + + + + DEAS Sbjct: 898 LRRFTLHESDPSQTMEALEKKLMSPPLVATTSLSINHPLFTR-RSFDYCIVDEASQVT 954 >gi|321466581|gb|EFX77576.1| hypothetical protein DAPPUDRAFT_54191 [Daphnia pulex] Length = 982 Score = 42.2 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 10/135 (7%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 A++A RG GK+ + + +I + S LK L+ + K L + Sbjct: 273 VALTAARGRGKSAAL-GLSMAAAVAFGYSNIFVTSPSPENLKT-LFEFIFKGFDALQYSE 330 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + ++ + D + + V DE Sbjct: 331 HEDYSITQSSNPEFNKAVVRVDIFHDHRQTIQYIHPTDAAKLGQAE--------LVVIDE 382 Query: 200 ASGTPDIINKSILGF 214 A+ P + K++LG Sbjct: 383 AAAIPLPLVKALLGP 397 >gi|258516762|ref|YP_003192984.1| CRISPR-associated helicase Cas3 [Desulfotomaculum acetoxidans DSM 771] gi|257780467|gb|ACV64361.1| CRISPR-associated helicase Cas3 [Desulfotomaculum acetoxidans DSM 771] Length = 801 Score = 42.2 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 42/185 (22%), Gaps = 9/185 (4%) Query: 38 WGIKGKPLEH--FSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95 W LE S P ++ + A N + +++ A+ G GKT + Sbjct: 227 WAELAGILEAKLSSYPQESKINGLRAEISLACRNFARNGSGVYQLAV--PTGSGKTLSSL 284 Query: 96 WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW--LSMLPHRHW--FEMQSLSLHPS 151 L I I T + + E+ + H + Sbjct: 285 RYALNHAQECDKDRIFYIIP-YTTIIDQNAREIKNILGHEEMILEHHSNLIVADDEEEVV 343 Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211 + I T H+ + DE P Sbjct: 344 NYKLLTERWDSPIILTTMVQFLNTLFNGGTQDVRRLHHLANSVIIFDEIQAIPIKCISMF 403 Query: 212 LGFFT 216 + Sbjct: 404 NSALS 408 >gi|223590207|sp|A5DE68|FAL1_PICGU RecName: Full=ATP-dependent RNA helicase FAL1 gi|190345565|gb|EDK37471.2| hypothetical protein PGUG_01569 [Meyerozyma guilliermondii ATCC 6260] Length = 397 Score = 42.2 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 64/232 (27%), Gaps = 29/232 (12%) Query: 5 ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64 + D++L++EL + + M P +KG F P Q + + Sbjct: 1 MDFDRELDEELEFTKSTKKVKIYPTFESMNLKPELLKGIYNYGFEAPSAIQSRAIMQI-- 58 Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI-STRPGMSIICIANSETQLKNT 123 + G GKT + +L I + + ++ + Sbjct: 59 -IRGRDTIAQAQS---------GTGKTATFSIGILSSIDTKSKDCQALVLSPT------- 101 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 E+++ + + H + ++ H ++ E + + I+ Sbjct: 102 --RELAQQIENVI-EHLGDYMNVRSHACIGGTQVGEDVKKLQQGQHIISGTPGRVLDMIK 158 Query: 184 FVGPHNTHGMAVFNDEAS-----GTPDIINKSILGFFTELNPNRFWIMTSNT 230 H + DEA G + I + I T Sbjct: 159 RRNIMPRHVKMLVLDEADELLTKGFKEQIYE-IYKTLPAGAQVVVVSATLTP 209 >gi|153005404|ref|YP_001379729.1| DEAD/DEAH box helicase domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152028977|gb|ABS26745.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp. Fw109-5] Length = 680 Score = 42.2 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 41/149 (27%), Gaps = 18/149 (12%) Query: 60 EAVDVHCHSNVNNSNPTIFK-------CAISAGRGIGKTTLNAWMMLWLIST-RPGMSII 111 A+ H + + F+ + + G GKT A +L I+ R S + Sbjct: 33 RAIAEHGYERPTPVQVSTFRPVRDGKDVIVRSKTGTGKTAAFAIPILERIADGRRRPSAL 92 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + + + + + LS+ A + EQ +++ I Sbjct: 93 VMCPTRELAIQVAQEFTA----------LAKHRDLSVVAVYGGASMGEQLQKLEAGAEII 142 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 M DEA Sbjct: 143 VGTPGRIYDHIRRRTLKLDETMVCCLDEA 171 >gi|262038656|ref|ZP_06012023.1| DNA repair helicase [Leptotrichia goodfellowii F0264] gi|261747326|gb|EEY34798.1| DNA repair helicase [Leptotrichia goodfellowii F0264] Length = 559 Score = 42.2 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 54/193 (27%), Gaps = 37/193 (19%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI------- 102 +P+ Q E +E + + + K + A G GKT L A + Sbjct: 269 EPNSMQKEILEKLKITRKNGNK-------KGLVVAATGTGKTYLAAMDIKEFFKSKNIIG 321 Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162 R + IA+ E L+N S L + + + Sbjct: 322 YNRKKARFLFIAHREELLENAA-KVFSNILEVA-------------------EDDFGKIF 361 Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222 G + + + + DE ++ +F+ P Sbjct: 362 GGKKESDFEMIFASIQSLRSCYKEFRKDKFDYIIIDEFHHASADSYNKVINYFS---PEF 418 Query: 223 FWIMTSNTRRLNG 235 +T+ R++G Sbjct: 419 LLGLTATPERMDG 431 >gi|253687258|ref|YP_003016448.1| type I site-specific deoxyribonuclease, HsdR family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753836|gb|ACT11912.1| type I site-specific deoxyribonuclease, HsdR family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 1031 Score = 42.2 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 21/189 (11%), Positives = 52/189 (27%), Gaps = 7/189 (3%) Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICI---ANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 +G GK+ W+ W+ P ++ + + Q+++ Sbjct: 278 QGSGKSLTMVWLAKWIRENMPNSRVLIVTDRTELDEQIESVFMGVDEDIYRTSSGNDLIA 337 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 + P + + + +++ T +E + + VF DE Sbjct: 338 TLNHPN-PWLICSLVHKFGRRSEAEDSAATDAFITELQQSLTKTFRAKGDLFVFVDECH- 395 Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262 + + T + P +I + T + + Y+ D +G+ Sbjct: 396 --RTQSGKLHNAMTTILPEALFIGFTGTPLMKKDKKKSVEVFGPYIHTYKFDEAVADGVV 453 Query: 263 SGFHEGIIS 271 Sbjct: 454 LDLRYEARD 462 >gi|255719266|ref|XP_002555913.1| KLTH0H00770p [Lachancea thermotolerans] gi|238941879|emb|CAR30051.1| KLTH0H00770p [Lachancea thermotolerans] Length = 1539 Score = 42.2 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 2/118 (1%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTTL ++ L++ G +I+ + + + + N L + + + H + Sbjct: 1099 GTGKTTLIVEIVKSLVAR--GKTILLTSYTHSAIDNILIKLKNCDIDICRLGHKHRVHQE 1156 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + E + T DT + + V DEAS Sbjct: 1157 AWEFVPDFTEASTFEKFKEQVEKPSVVATTCLNIHDTLLSLRSKDFDYVILDEASQLS 1214 >gi|302653167|ref|XP_003018414.1| ABC bile acid transporter, putative [Trichophyton verrucosum HKI 0517] gi|291182058|gb|EFE37769.1| ABC bile acid transporter, putative [Trichophyton verrucosum HKI 0517] Length = 1338 Score = 41.9 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 42/249 (16%), Positives = 66/249 (26%), Gaps = 32/249 (12%) Query: 7 TDQKLEQELHEMLMHAECVLSFKNFVM-RFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV- 64 T Q L E L N V + P E+ S P W A + Sbjct: 1043 TFSSTLQTLVTAWTQLETALGAINRVRSYSQDVKDENLPNENGSVPDEWPESGAIAFNDV 1102 Query: 65 ---------HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 VN S K AI G GK++L + L + +I+ Sbjct: 1103 SASYDPSLGPVLKGVNLSINAGEKVAICGRTGSGKSSLVS--CLLRMLEMDSGTILI--- 1157 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS---LHPSGWYAELLEQSMGIDSKHYTIT 172 + +V L+ LP +F ++ E + S+ + Sbjct: 1158 DGIDISTISRQQVRSRLNTLPQEPFFLYGTVRDNVDPLQLADDEAVIGSLQDVGLWEFLE 1217 Query: 173 CRTYSEERPDTFVGPHNTHGMA------------VFNDEA-SGTPDIINKSILGFFTELN 219 R +E H + + DEA S +K + E Sbjct: 1218 ARGGLDEEVSEDKLSHGQRQLFCLARAVVKQGNILIMDEATSSVDAETDKVMEDVIREKF 1277 Query: 220 PNRFWIMTS 228 I + Sbjct: 1278 KGMTVIAIA 1286 >gi|254556152|ref|YP_003062569.1| prophage Lp3 protein 15, terminase large subunit [Lactobacillus plantarum JDM1] gi|254045079|gb|ACT61872.1| prophage Lp3 protein 15, terminase large subunit [Lactobacillus plantarum JDM1] Length = 638 Score = 41.9 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 36/327 (11%), Positives = 84/327 (25%), Gaps = 43/327 (13%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMML 99 WQ +A+ N S F A+ + R GKT L ++ Sbjct: 100 PDVESGKPMPLMVWQ----QAILCLLQGWRNESGEKRFTYALISVARTNGKTYLMNILLT 155 Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159 + G + K L + +S S A+ + Sbjct: 156 YGYLIEAGNRKNLDFAYSGTTEQIS----KKGFRYLGSTIDYLAESQSYFKKRIKAKEIN 211 Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219 S + + + H + +A+ D+++K G + N Sbjct: 212 ASADLIQSFKSRNQILRLTANSGKWDSYHCNTAVLDEYGDAAYDDDVLSKLSSGQIHQTN 271 Query: 220 PNRFWIMTSNTRRLNGWFYDIFNIPL------------EDWKRYQIDTRTVEGIDSGF-- 265 I T+ F+D + + ++ D+ + Sbjct: 272 KQLIAISTAYENSNVPMFHDYQRLTRVIEKDNERKSETSLFLCWEQDSIDETDRPDTWEK 331 Query: 266 -------------------HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM 306 E + + L + + ++ + I++++ Sbjct: 332 SNPLLGLAEMHERLLKGLLDEKDKRESTGNVAWFQNRNLNMWLAVSKDKYLQLDDIQKSV 391 Query: 307 S-REAIDDLYAPLIMGCDIAGEGGDKT 332 ++ + +G D++ D + Sbjct: 392 VPNDSFTIDGRDVYVGLDLSRLDDDSS 418 >gi|229917516|ref|YP_002886162.1| type III restriction protein res subunit [Exiguobacterium sp. AT1b] gi|229468945|gb|ACQ70717.1| type III restriction protein res subunit [Exiguobacterium sp. AT1b] Length = 959 Score = 41.9 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 63/186 (33%), Gaps = 32/186 (17%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P+ Q ++ +D + + + G GKT L A + + + Sbjct: 223 PNDMQRSALDGIDAVRQQGHQ-------RALVVSATGTGKTYLAA----FDVRRYEPKRM 271 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + + + E LK + + K + + + + IDSK+ Sbjct: 272 LFVVHREQILKKAI-NDFHKVIGGNIEDYGILSGTSRV---------------IDSKYVF 315 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 T +T S++ +T + DE+ + +L +FT P MT+ Sbjct: 316 ATIQTISKD--ETLYQFAQETFDYILIDESHRAGANTYQKLLEYFT---PKFLLGMTATP 370 Query: 231 RRLNGW 236 R +G+ Sbjct: 371 ERSDGY 376 >gi|288959052|ref|YP_003449393.1| phage terminase large subunit [Azospirillum sp. B510] gi|288911360|dbj|BAI72849.1| phage terminase large subunit [Azospirillum sp. B510] Length = 662 Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 23/170 (13%), Positives = 53/170 (31%), Gaps = 26/170 (15%) Query: 38 WGIKGKPLEHFS--QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95 W + L S P+ +Q E ++A+ P + + + +G T + + Sbjct: 56 WAERHARLYDGSVFHPYPYQREILDAMTD----------PVVERITLMKSARVGYTQMLS 105 Query: 96 WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 + + I+ RP I+ + + ++ + E S +G + Sbjct: 106 AALGYFIAQRP-SKIMIVQPTLEDAEDYS-------------KDTIEPLSDWPVLAGLLS 151 Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 + + G K + + ++ + DE G P Sbjct: 152 DGGTRRKGETIKRKSFPGGSLKITGANSPRAFRRIDLDVLLFDEVDGYPP 201 >gi|148700123|gb|EDL32070.1| DNA2 DNA replication helicase 2-like (yeast) [Mus musculus] Length = 998 Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 38/322 (11%), Positives = 80/322 (24%), Gaps = 21/322 (6%) Query: 4 LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63 + STD + L E+++ F ++ P K ++ Q + M+ V Sbjct: 519 MESTDPS--KRLRELIIDFREP-QFIAYLSSVLPHDAKDTVANILKGLNKPQRQAMKRV- 574 Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 + + G GKTT ++ L + G S++ + + + + N Sbjct: 575 ---------LLSKDYTLIVGMP-GTGKTTTICALVRILSAC--GFSVLLTSYTHSAVDNI 622 Query: 124 LWAE--VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 L L H S+ + Y + Sbjct: 623 LLKLAKFKVGFLRLGQSHKVHPDIQKFTEEEICRSRSIASLAHLEELYNSHPIVATTCMG 682 Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241 DEAS + + F + Sbjct: 683 INHPIFSRKTFDFCIVDEASQISQPV--CLGPLFFSRRFVLVGDHQQLPPLVVNREARAL 740 Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301 + +KR + + V + + + ++ + N Sbjct: 741 GMSESLFKRLERNESAVVQLTVQYRMNRKIMSLSNKLTYAGKLECGSDRVANAVLALPNL 800 Query: 302 IEEAMSREAIDDLYA-PLIMGC 322 + +S + D P + G Sbjct: 801 KDARLSLQLYADYSDSPWLAGV 822 >gi|283837769|ref|NP_796346.2| DNA2-like helicase [Mus musculus] gi|119368660|sp|Q6ZQJ5|DNA2L_MOUSE RecName: Full=DNA2-like helicase; AltName: Full=DNA replication ATP-dependent helicase-like homolog Length = 1062 Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 38/322 (11%), Positives = 80/322 (24%), Gaps = 21/322 (6%) Query: 4 LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63 + STD + L E+++ F ++ P K ++ Q + M+ V Sbjct: 583 MESTDPS--KRLRELIIDFREP-QFIAYLSSVLPHDAKDTVANILKGLNKPQRQAMKRV- 638 Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 + + G GKTT ++ L + G S++ + + + + N Sbjct: 639 ---------LLSKDYTLIVGMP-GTGKTTTICALVRILSAC--GFSVLLTSYTHSAVDNI 686 Query: 124 LWAE--VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 L L H S+ + Y + Sbjct: 687 LLKLAKFKVGFLRLGQSHKVHPDIQKFTEEEICRSRSIASLAHLEELYNSHPIVATTCMG 746 Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241 DEAS + + F + Sbjct: 747 INHPIFSRKTFDFCIVDEASQISQPV--CLGPLFFSRRFVLVGDHQQLPPLVVNREARAL 804 Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301 + +KR + + V + + + ++ + N Sbjct: 805 GMSESLFKRLERNESAVVQLTVQYRMNRKIMSLSNKLTYAGKLECGSDRVANAVLALPNL 864 Query: 302 IEEAMSREAIDDLYA-PLIMGC 322 + +S + D P + G Sbjct: 865 KDARLSLQLYADYSDSPWLAGV 886 >gi|109732330|gb|AAI15717.1| Dna2 protein [Mus musculus] Length = 966 Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 38/322 (11%), Positives = 80/322 (24%), Gaps = 21/322 (6%) Query: 4 LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63 + STD + L E+++ F ++ P K ++ Q + M+ V Sbjct: 583 MESTDPS--KRLRELIIDFREP-QFIAYLSSVLPHDAKDTVANILKGLNKPQRQAMKRV- 638 Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 + + G GKTT ++ L + G S++ + + + + N Sbjct: 639 ---------LLSKDYTLIVGMP-GTGKTTTICALVRILSAC--GFSVLLTSYTHSAVDNI 686 Query: 124 LWAE--VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 L L H S+ + Y + Sbjct: 687 LLKLAKFKVGFLRLGQSHKVHPDIQKFTEEEICRSRSIASLAHLEELYNSHPIVATTCMG 746 Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241 DEAS + + F + Sbjct: 747 INHPIFSRKTFDFCIVDEASQISQPV--CLGPLFFSRRFVLVGDHQQLPPLVVNREARAL 804 Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301 + +KR + + V + + + ++ + N Sbjct: 805 GMSESLFKRLERNESAVVQLTVQYRMNRKIMSLSNKLTYAGKLECGSDRVANAVLALPNL 864 Query: 302 IEEAMSREAIDDLYA-PLIMGC 322 + +S + D P + G Sbjct: 865 KDARLSLQLYADYSDSPWLAGV 886 >gi|37359766|dbj|BAC97861.1| mKIAA0083 protein [Mus musculus] Length = 1078 Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 38/322 (11%), Positives = 80/322 (24%), Gaps = 21/322 (6%) Query: 4 LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63 + STD + L E+++ F ++ P K ++ Q + M+ V Sbjct: 599 MESTDPS--KRLRELIIDFREP-QFIAYLSSVLPHDAKDTVANILKGLNKPQRQAMKRV- 654 Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 + + G GKTT ++ L + G S++ + + + + N Sbjct: 655 ---------LLSKDYTLIVGMP-GTGKTTTICALVRILSAC--GFSVLLTSYTHSAVDNI 702 Query: 124 LWAE--VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 L L H S+ + Y + Sbjct: 703 LLKLAKFKVGFLRLGQSHKVHPDIQKFTEEEICRSRSIASLAHLEELYNSHPIVATTCMG 762 Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241 DEAS + + F + Sbjct: 763 INHPIFSRKTFDFCIVDEASQISQPV--CLGPLFFSRRFVLVGDHQQLPPLVVNREARAL 820 Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301 + +KR + + V + + + ++ + N Sbjct: 821 GMSESLFKRLERNESAVVQLTVQYRMNRKIMSLSNKLTYAGKLECGSDRVANAVLALPNL 880 Query: 302 IEEAMSREAIDDLYA-PLIMGC 322 + +S + D P + G Sbjct: 881 KDARLSLQLYADYSDSPWLAGV 902 >gi|26390571|dbj|BAC25919.1| unnamed protein product [Mus musculus] Length = 1062 Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 38/322 (11%), Positives = 80/322 (24%), Gaps = 21/322 (6%) Query: 4 LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63 + STD + L E+++ F ++ P K ++ Q + M+ V Sbjct: 583 MESTDPS--KRLRELIIDFREP-QFIAYLSSVLPHDAKDTVANILKGLNKPQRQAMKRV- 638 Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 + + G GKTT ++ L + G S++ + + + + N Sbjct: 639 ---------LLSKDYTLIVGMP-GTGKTTTICALVRILSAC--GFSVLLTSYTHSAVDNI 686 Query: 124 LWAE--VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 L L H S+ + Y + Sbjct: 687 LLKLAKFKVGFLRLGQSHKVHPDIQKFTEEEICRSRSIASLAHLEELYNSHPIVATTCMG 746 Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF 241 DEAS + + F + Sbjct: 747 INHPIFSRKTFDFCIVDEASQISQPV--CLGPLFFSRRFVLVGDHQQLPPLVVNREARAL 804 Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301 + +KR + + V + + + ++ + N Sbjct: 805 GMSESLFKRLERNESAVVQLTVQYRMNRKIMSLSNKLTYAGKLECGSDRVANAVLALPNL 864 Query: 302 IEEAMSREAIDDLYA-PLIMGC 322 + +S + D P + G Sbjct: 865 KDARLSLQLYADYSDSPWLAGV 886 >gi|316966601|gb|EFV51154.1| putative Sec63 domain protein [Trichinella spiralis] Length = 1792 Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 28/242 (11%), Positives = 57/242 (23%), Gaps = 25/242 (10%) Query: 59 MEAVDVHCHSNVNNSNPTIFKCA--------ISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 +E + + N +F+ + A G GKT +L L P Sbjct: 1060 LEELYTDEIKSFNPIQTQVFRVFYENKDNVFVGAPHGSGKTICAELAILQLFKKNPNGKC 1119 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + IA E L + ++ KW F + ++ + + Sbjct: 1120 VYIAPLEP-LCDIVY---EKW------ELKFGKKMGKSVVILTGETAVDLKLLAKGQVII 1169 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF-------TELNPNRF 223 T + H + D+ T+L+ Sbjct: 1170 STPEKWDVLSRRWKQRKHVQNVGLYIADDLHFVGGENGPVYEVTCSRMRFMSTQLDTPLR 1229 Query: 224 WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283 + S ++ + + R + I +A+ Sbjct: 1230 IVGLSVPLSNAKDVGQWLGCSSQNTFNFHPNVRPMPLEVHILGFNITHTASRLDAMAKQV 1289 Query: 284 IL 285 L Sbjct: 1290 YL 1291 >gi|163754792|ref|ZP_02161914.1| hypothetical protein KAOT1_17893 [Kordia algicida OT-1] gi|161325733|gb|EDP97060.1| hypothetical protein KAOT1_17893 [Kordia algicida OT-1] Length = 887 Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 30/208 (14%), Positives = 51/208 (24%), Gaps = 40/208 (19%) Query: 24 CVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS 83 S + F W +Q +F+ D H + N + + Sbjct: 11 ISNSPFETLQFQFSW-------------RNYQEQFLAHFDTHLNDNHLH---------VV 48 Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 A G GKT L + R I A + T + R Sbjct: 49 APPGSGKTILG-----LEMLRRVQKKTIVFAPTLT------------IRNQWKDRLLSFF 91 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + + S+ + E + D V AV DEA Sbjct: 92 TNDNAFADFSFNLKKPASLTFVTYQSLHAFYKTFETKEDFLVFFETYGIEAVVLDEAHHL 151 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTR 231 + K + + +T+ Sbjct: 152 KNEWWKCLF-ALKDDRKLTTIALTATPP 178 >gi|56420639|ref|YP_147957.1| DNA/RNA helicase [Geobacillus kaustophilus HTA426] gi|56380481|dbj|BAD76389.1| DNA/RNA helicase [Geobacillus kaustophilus HTA426] Length = 815 Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 25/186 (13%), Positives = 49/186 (26%), Gaps = 36/186 (19%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 QP Q+E +E ++ + K + G+GKT L A R Sbjct: 223 QPRFAQVEALERLEAAYEEGYD-------KAMVVMATGLGKTYLAA------FFARRFSR 269 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ IA+ E L+ + + P ++ Sbjct: 270 VLFIAHREEILRQ------------------AKQSFERVIPDRTAGLYDGNQKEGNADMV 311 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 + T S ++ + DE + + P +T+ Sbjct: 312 FASIFTLSMKKH--LHSFRPDAFDLIIVDEFHHAAARSYERV---LCYFQPKFLLGITAT 366 Query: 230 TRRLNG 235 R + Sbjct: 367 PDRSDN 372 >gi|13358147|ref|NP_078421.1| ATP-dependent RNA helicase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762030|ref|YP_001752667.1| ATP-dependent RNA helicase [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920303|ref|ZP_02931651.1| ATP-dependent RNA helicase [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508613|ref|ZP_02958120.1| ATP-dependent RNA helicase [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701851|ref|ZP_02971513.1| ATP-dependent RNA helicase [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|11356748|pir||A82872 ATP-dependent RNA helicase UU582 [imported] - Ureaplasma urealyticum gi|6899592|gb|AAF30996.1|AE002157_1 ATP-dependent RNA helicase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827607|gb|ACA32869.1| ATP-dependent RNA helicase [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902717|gb|EDT49006.1| ATP-dependent RNA helicase [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182676071|gb|EDT87976.1| ATP-dependent RNA helicase [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701147|gb|EDU19429.1| ATP-dependent RNA helicase [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 443 Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 28/188 (14%), Positives = 54/188 (28%), Gaps = 21/188 (11%) Query: 31 FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90 F + W + + +P QL+ M + A G GK Sbjct: 3 FNSNYQKWILDSLINQKIFEPTPIQLKTMPLIAK------------RENIIGVAPTGTGK 50 Query: 91 TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150 T +L + + +I I + + ++++ + P L + Sbjct: 51 TLAFVLPILNNLDLSQKLQVIIITPTRELARQI-FSKIIVFKKHQPL--------LQVKM 101 Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS 210 + +Q +K + ++ T H A+ DEA D+ S Sbjct: 102 LIGGESIDQQINSQLNKSQLLIATPTRLKQILTRQILDLHHVNALVFDEADMLMDLGFIS 161 Query: 211 ILGFFTEL 218 L F Sbjct: 162 DLEFINSQ 169 >gi|303249526|ref|ZP_07335733.1| ATP-dependent helicase HepA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251848|ref|ZP_07533749.1| RNA polymerase-associated protein rapA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302651600|gb|EFL81749.1| ATP-dependent helicase HepA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860540|gb|EFM92552.1| RNA polymerase-associated protein rapA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 969 Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 29/261 (11%), Positives = 64/261 (24%), Gaps = 19/261 (7%) Query: 33 MRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTI-FKCAISAGRGIGKT 91 + F P R ++ H + + ++ G+GKT Sbjct: 123 RFALRYRALQHQQAQFQSPLRGMRGIRASLIPHQLHIAKEVGQRVAPRVLLADEVGLGKT 182 Query: 92 TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151 ++ + + ++ + Q + W V F+ + S Sbjct: 183 IEAGMILQQQLFSGRVERVLVLVPESLQHQ---W-LVEMLRRFNLKFSLFDEERCSDFDK 238 Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211 DS+ I + E P+ +H + DEA Sbjct: 239 ADEDGNDVSENPFDSEALVIASIDWLESSPNRAKQVLASHWDMLIVDEAHHL---EWSEN 295 Query: 212 LGFF-------TELNPNRFWIMTSNTR--RLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262 ++T+ F + + + + Y + E D Sbjct: 296 EPSVGYQFVERLSKQTPAVLLLTATPEQLGQESHFARLALLDADRFYDYH--SFIAEQKD 353 Query: 263 SGFHEGIISRYGLDSDVARIE 283 ++ D ++ E Sbjct: 354 YKPVADAVATLLNDKPLSHDE 374 >gi|21910864|ref|NP_665132.1| putative terminase large subunit - phage associated [Streptococcus pyogenes MGAS315] gi|28876410|ref|NP_795631.1| putative terminase large subunit [Streptococcus pyogenes phage 315.5] gi|28895446|ref|NP_801796.1| terminase large subunit [Streptococcus pyogenes SSI-1] gi|21905070|gb|AAM79935.1| putative terminase large subunit - phage-associated [Streptococcus pyogenes MGAS315] gi|28810692|dbj|BAC63629.1| terminase large subunit (G2P) hypothetical protein, phage SPP1 [Streptococcus pyogenes SSI-1] Length = 96 Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 NP I A GRG GK++ A ++ + + ++ +CI ++ L+ +++ ++ +S Sbjct: 30 NPQILNIACKGGRGSGKSSNIA-FIISRLIIQYPVNAVCIRKTDNTLEQSVYEQIKWAIS 88 Query: 134 MLPHRHWF 141 +F Sbjct: 89 EQGLERYF 96 >gi|301299633|ref|ZP_07205893.1| helicase C-terminal domain protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852777|gb|EFK80401.1| helicase C-terminal domain protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 556 Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 62/195 (31%), Gaps = 31/195 (15%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 + +P++ Q E ++ + K I + G GKT L A + Sbjct: 76 EDNSNYSTIKPNKMQKEALKNL-------QKLRLLRETKGLIISATGTGKTYLAALDV-- 126 Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 + +A+ E LK +L + +L LS + Sbjct: 127 --KNYNPKRFLFVAHREQILKKSL----DSFHKVLGGDKKTNYGILSGNAK--------- 171 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220 D+K+ T +T S+ + + DEA I +L +FT P Sbjct: 172 --NTDAKYLFATVQTLSK--AENLNQFKRDEFDYILIDEAHHVGSKIYGKLLDYFT---P 224 Query: 221 NRFWIMTSNTRRLNG 235 + MT+ R + Sbjct: 225 DFLLGMTATPERSDD 239 >gi|270002717|gb|EEZ99164.1| hypothetical protein TcasGA2_TC016163 [Tribolium castaneum] Length = 2421 Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 31/285 (10%), Positives = 61/285 (21%), Gaps = 52/285 (18%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 + F Q + Q + +V I A G GKTT+ + +L L Sbjct: 1318 DKFPQFNPIQTQVFNSVYNGDD-----------NIFIGAPTGSGKTTIAEFAILRLFDKN 1366 Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 P + + + + T + W + F + + Sbjct: 1367 PEGRCVYLVPKDALAELT----FADWHNK------FGQILGKKVVLLTGETGTDLKLLAK 1416 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN------ 219 + T + + + DE I + + Sbjct: 1417 GQIVISTAEKWDVLSRRWKQRKNVQNVNLFIVDELHLIGGEDGPVIEVVCSRMRYISSQI 1476 Query: 220 -PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278 I S + + R V Sbjct: 1477 EKPIRIIALSASLMDYRDVSQWLGCNANATFNFHPSVRPVPLELH--------------- 1521 Query: 279 VARIEILGQFPQQEVNNFIPHNY-IEEAMSREAIDDLYAPLIMGC 322 + G + I + A+ R + P+I+ Sbjct: 1522 -----VQGINITHNASRLIAMAKPVYNAVVR---YSPHKPVIVFV 1558 >gi|240276370|gb|EER39882.1| DNA replication ATP-dependent helicase dna2 [Ajellomyces capsulatus H143] gi|325089772|gb|EGC43082.1| DNA replication helicase Dna2 [Ajellomyces capsulatus H88] Length = 1609 Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 3/118 (2%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTT A ++ G S++ + + T + N L + L ++ Sbjct: 1102 GTGKTTTIAHII--RALASQGKSVLLTSYTHTAVDNILLKIKDDNIRTLRLGATTKIHPD 1159 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + A E + + + + + ++ DEAS Sbjct: 1160 VRKFADLAATPKETTEELKDIYENSRIVATTCLGINHP-IFNSRMFDFCIVDEASQIT 1216 >gi|123478324|ref|XP_001322325.1| Type III restriction enzyme, res subunit family protein [Trichomonas vaginalis G3] gi|121905169|gb|EAY10102.1| Type III restriction enzyme, res subunit family protein [Trichomonas vaginalis G3] Length = 1042 Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 27/274 (9%), Positives = 63/274 (22%), Gaps = 42/274 (15%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + +L + +K ++ + M + + F G P ++ WQ+E + Sbjct: 43 LKKLATKIKKPKEYTVDEEMTSLGIPPFLQHAYL------NGIPQPSITKLRDWQIELCK 96 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + + GKT + ++ +I Sbjct: 97 D----------ENWRQGKNTVLLVPTSGGKTVAADLAVAQVLQENKNSKVIYTLPFVALA 146 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 ++ FE Q + + ++ ++ T Sbjct: 147 NEKYTEYEKRF---------FEYQVRPFYQNIGGSDFRRGNI------AICTYEKAHALL 191 Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDI-----INKSILGFFTELNPNRFWIMTSNTRRLNG 235 G ++ + DE + I IL + R +T+ + Sbjct: 192 NSAIQGGYSHSIKLIIIDEVHMIGEEGRGSVIEALILKAKLMNDKPRLITLTATINESD- 250 Query: 236 WFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI 269 RT + Sbjct: 251 -----CQKLANWIDGNTFIWRTRPTPIKQIIKKQ 279 >gi|91093851|ref|XP_970554.1| PREDICTED: similar to pre-mRNA-splicing helicase BRR2 [Tribolium castaneum] Length = 2137 Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 31/285 (10%), Positives = 61/285 (21%), Gaps = 52/285 (18%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 + F Q + Q + +V I A G GKTT+ + +L L Sbjct: 1318 DKFPQFNPIQTQVFNSVYNGDD-----------NIFIGAPTGSGKTTIAEFAILRLFDKN 1366 Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 P + + + + T + W + F + + Sbjct: 1367 PEGRCVYLVPKDALAELT----FADWHNK------FGQILGKKVVLLTGETGTDLKLLAK 1416 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN------ 219 + T + + + DE I + + Sbjct: 1417 GQIVISTAEKWDVLSRRWKQRKNVQNVNLFIVDELHLIGGEDGPVIEVVCSRMRYISSQI 1476 Query: 220 -PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278 I S + + R V Sbjct: 1477 EKPIRIIALSASLMDYRDVSQWLGCNANATFNFHPSVRPVPLELH--------------- 1521 Query: 279 VARIEILGQFPQQEVNNFIPHNY-IEEAMSREAIDDLYAPLIMGC 322 + G + I + A+ R + P+I+ Sbjct: 1522 -----VQGINITHNASRLIAMAKPVYNAVVR---YSPHKPVIVFV 1558 >gi|297617717|ref|YP_003702876.1| metal dependent phosphohydrolase [Syntrophothermus lipocalidus DSM 12680] gi|297145554|gb|ADI02311.1| metal dependent phosphohydrolase [Syntrophothermus lipocalidus DSM 12680] Length = 724 Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 36/255 (14%), Positives = 64/255 (25%), Gaps = 32/255 (12%) Query: 11 LEQELHEMLMHAECVLSFKNFVMRFFPWG-----IKGKPLEHFSQPHRWQLEFMEAVDVH 65 + L ML + + FFP E + + Q E + Sbjct: 159 QRELLIRMLFSVLIDADRLDTELHFFPERARLRDQGPTLAELAIRFRKDQEELLRQ-SED 217 Query: 66 CHSNVNNSNPTIFKCAI------------SAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 S VN +++ + +A G GKT L II Sbjct: 218 RLSVVNEVRRDVYRACVDAAKSPQGWYSLTAPTGAGKTRSALAFALEHALANGHERIIFA 277 Query: 114 ANSETQL-------KNTLWAE-VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 + + ++ L + V + S + + + L + Sbjct: 278 LPYTSIIDQNAEVYRSILGPDSVLEHHSQVKTSDEEDEEQRVLRMRLAEENWDVPLVVT- 336 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN---KSILGFFTELNPNR 222 + RP + H + DEA P + +L E Sbjct: 337 --TTVQLLESLFSNRPSSCRKIHRIAKSVLIFDEAQTLPPELLRPTMQVLKDLAENYGTT 394 Query: 223 FWIMTSNTRRLNGWF 237 + T+ L F Sbjct: 395 VVLSTATQPALKDEF 409 >gi|159043541|ref|YP_001532335.1| type III restriction protein res subunit [Dinoroseobacter shibae DFL 12] gi|157911301|gb|ABV92734.1| type III restriction protein res subunit [Dinoroseobacter shibae DFL 12] Length = 938 Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 56/193 (29%), Gaps = 34/193 (17%) Query: 43 KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102 +PH Q E + A+ + S + A G+GKT L A+ + + Sbjct: 237 AEEGPPPEPHTIQQEALAALA------QSRSKGHRAGLVVLA-TGLGKTWLAAFDTIRAM 289 Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162 + I+ +A+ + L + A + P Sbjct: 290 A----GRILFVAHRDEILTQAMAA------------------FRKVRPDAKLGRYTGAEK 327 Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222 D++ + +T R H + DE + ++ FT Sbjct: 328 EADAEILFASVQTL--GRIGHLRQFDRDHFDYIVVDEFHHAAARTYQKLIEHFTPG---F 382 Query: 223 FWIMTSNTRRLNG 235 +T+ R +G Sbjct: 383 LLGLTATPDRTDG 395 >gi|221123568|ref|XP_002167666.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Hydra magnipapillata] Length = 635 Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 30/286 (10%), Positives = 70/286 (24%), Gaps = 46/286 (16%) Query: 80 CAISAGRGIGKTTLNAWMMLWLI------STRPGMSIICIANSETQLKNTLWAEVSKWLS 133 + A G GKT A +L + R ++ +A + EV K+ Sbjct: 91 VIVQARTGTGKTLGFALPVLEKLKNIDSEQKRKSPLVLTLAPTRELAIQIC-KEVEKY-- 147 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + + +++ A +Q + + + + Sbjct: 148 --------KPRQMTISCFYGGAPYDKQEQELRNGIDFLVGTPGRILDHINKGRLDVSKLQ 199 Query: 194 AVFNDEASGTPDIIN-----KSILGFFTELNPN-RFWIMTSNT-----------RRLNGW 236 V DEA D+ + + +TE N + + Sbjct: 200 YVILDEADRMMDMGFQESMEEILSYAYTEDNKPQTLLFSATVPAWLQKNSEKYLTKNLKK 259 Query: 237 FYDIFNIPLE-----DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291 F I + + K + + ++G + Sbjct: 260 FDLIGRDKNKGATTVEHKAIKCTYWDRPSTIKDIIQQYSGKFGKTIIFTSTKQEANELAL 319 Query: 292 E-----VNNFIPHNYIEEAMSREAI--DDLYAPLIMGCDIAGEGGD 330 + + + ++ + ++ D+A G D Sbjct: 320 NSVINMDSQVLHGDIQQKQRELTLQSFRNGKFNCLIATDVAARGLD 365 >gi|198463449|ref|XP_001352828.2| GA21960 [Drosophila pseudoobscura pseudoobscura] gi|198151259|gb|EAL30329.2| GA21960 [Drosophila pseudoobscura pseudoobscura] Length = 697 Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 19/153 (12%), Positives = 37/153 (24%), Gaps = 4/153 (2%) Query: 60 EAVDVHCHSNVNNSNPTIFK-CAISAGRGIGKTTLNAWMMLWLISTRPGMSI--ICIANS 116 V P + +SA G GKT A ++ L++ R + + + Sbjct: 170 RTVIPWILEAQGQPAPLRPRDICVSAPTGSGKTLAFAIPIVQLLNNRVRCKVRALVVLPV 229 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 + + S + L + + +T Sbjct: 230 AELALQV-FKVIRALCSKTELEVCLLSKQHRLEDEQEKLVEVYKGQIYSKADIVVTTPGR 288 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209 + G + DEA D + Sbjct: 289 LVDHLHATKGFCLKSLKFLVIDEADRIMDAFFQ 321 >gi|90020224|ref|YP_526051.1| hypothetical protein Sde_0575 [Saccharophagus degradans 2-40] gi|89949824|gb|ABD79839.1| type III restriction enzyme, res subunit [Saccharophagus degradans 2-40] Length = 895 Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 25/223 (11%), Positives = 62/223 (27%), Gaps = 43/223 (19%) Query: 27 SFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR 86 S N + W +Q ++AV H + + I A Sbjct: 2 SPFNEMEFRHSW-------------RPYQKRVLDAVHQHLNDK---------RLHIVAAP 39 Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTTL + ++ + +P I ++ + +++ ++ + + + + Sbjct: 40 GAGKTTL--GLEVFRLLGKP---AIVLSPT-RVIRDQWLDRLTDFCQLDDINKLNWVSNT 93 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN---------------TH 191 L P + + ++ T + + + Sbjct: 94 LLTPKTLTSITYQALHSQFAQELNQQDTTQDADEAEELELDKGLKDAELNNFISILEQYN 153 Query: 192 GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 + DEA +++ L +T+ + Sbjct: 154 IQVLILDEAHHLRAEWWRALEKVCNHLPNITLVSLTATPPYDS 196 >gi|198433360|ref|XP_002125539.1| PREDICTED: similar to DNA2 DNA replication helicase 2-like (yeast) [Ciona intestinalis] Length = 1322 Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 22/247 (8%), Positives = 54/247 (21%), Gaps = 10/247 (4%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 + + ++ + + + G GKTT M+ L+ G+ ++ + Sbjct: 897 AQMLRGLNKTQRQAIKRVLISKDYTLVVGMPGSGKTTTIVAMIRILLLC--GLRVLVTSY 954 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL---EQSMGIDSKHYTIT 172 + + + N L + L ++ L + + Y + Sbjct: 955 THSAVDNLLLKLIKYKTRFLRLGRPNQVHPNVLPYTEAVLSQNLKSPTELQKLYDEYRVV 1014 Query: 173 CRTYSEERPDTFVGPHNTH---GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 T F + DEAS + F Sbjct: 1015 GCTCLSVTSHIFFAIPGQNRPIFDVCIVDEASQIAQP--ACLAPLFHSERFVLVGDHLQL 1072 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 + ++R + + + + + P Sbjct: 1073 PPLVVSQEAKKMGADESLFRRLTSHKPALCELTLQYRMNKEIMALSNHVTYEGRLECAHP 1132 Query: 290 QQEVNNF 296 Sbjct: 1133 TVAEATV 1139 >gi|156848392|ref|XP_001647078.1| hypothetical protein Kpol_1050p80 [Vanderwaltozyma polyspora DSM 70294] gi|156117761|gb|EDO19220.1| hypothetical protein Kpol_1050p80 [Vanderwaltozyma polyspora DSM 70294] Length = 1505 Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 43/118 (36%), Gaps = 2/118 (1%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTT+ A ++ L++ + +I+ + + + + N L + ++++ + Sbjct: 1063 GTGKTTVIAEIIKILVANK--KTILLTSYTHSAVDNVLIKMSNTNMNIIRLGSKQRVHPE 1120 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 S + Y + ++ + T D + V DEAS Sbjct: 1121 SQKYTLDYDSIDNYEQYLEVINSASVVATTCLGINDVMLTMREKDFDYVILDEASQVS 1178 >gi|99081143|ref|YP_613297.1| phage terminase GpA [Ruegeria sp. TM1040] gi|99037423|gb|ABF64035.1| Terminase large subunit (GP2) [Ruegeria sp. TM1040] Length = 650 Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 24/208 (11%), Positives = 49/208 (23%), Gaps = 28/208 (13%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 +Q E ++ P + ++ G +GKT + I P ++ Sbjct: 58 PYQREVIDMTAD----------PRCNRISLMWGAQVGKTQTALAAQAYRIGFNPVSQMMM 107 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 +Q T W E P E + + + Q M + + Sbjct: 108 ---QPSQGDLTTWLETK----FNPLVEENEDLAELIAKPRGRQGVNNQRMKSYPGGFLMF 160 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD----IINKSILGFFTELNPNRFWIMTS 228 + + + DE G + R + S Sbjct: 161 SWS------GSPKTMRGRSAPFIVCDETDGYDRTNEGHPVGLLWQRAATFGDQRLLLEIS 214 Query: 229 NTR-RLNGWFYDIFNIPLEDWKRYQIDT 255 + W F + + + Sbjct: 215 TPTIKGGSWIEKSFEAGDQRYFYVRCPH 242 >gi|46143821|ref|ZP_00133947.2| COG0553: Superfamily II DNA/RNA helicases, SNF2 family [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207798|ref|YP_001053023.1| ATP-dependent helicase HepA [Actinobacillus pleuropneumoniae L20] gi|189029406|sp|A3MZ32|RAPA_ACTP2 RecName: Full=RNA polymerase-associated protein rapA; AltName: Full=ATP-dependent helicase hepA gi|126096590|gb|ABN73418.1| ATP-dependent helicase HepA [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 969 Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 29/261 (11%), Positives = 64/261 (24%), Gaps = 19/261 (7%) Query: 33 MRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTI-FKCAISAGRGIGKT 91 + F P R ++ H + + ++ G+GKT Sbjct: 123 RFALRYRALQHQQAQFQSPLRGMRGIRASLIPHQLHIAKEVGQRVAPRVLLADEVGLGKT 182 Query: 92 TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151 ++ + + ++ + Q + W V F+ + S Sbjct: 183 IEAGMILQQQLFSGRVERVLVLVPESLQHQ---W-LVEMLRRFNLKFSLFDEERCSDFDK 238 Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211 DS+ I + E P+ +H + DEA Sbjct: 239 ADEDGNDVSENPFDSEALVIASIDWLESSPNRAKQVLASHWDMLIVDEAHHLA---WSEN 295 Query: 212 LGFF-------TELNPNRFWIMTSNTR--RLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262 ++T+ F + + + + Y + E D Sbjct: 296 EPSVGYQFVERLSKQTPAVLLLTATPEQLGQESHFARLALLDADRFYDYH--SFIAEQKD 353 Query: 263 SGFHEGIISRYGLDSDVARIE 283 ++ D ++ E Sbjct: 354 YKPVADAVATLLNDKPLSHDE 374 >gi|146295679|ref|YP_001179450.1| hypothetical protein Csac_0636 [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409255|gb|ABP66259.1| protein of unknown function DUF815 [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 440 Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 67/237 (28%), Gaps = 21/237 (8%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMR-FFPWGIKGKPLEHFSQPHRWQLEFM 59 + + + T L E L+ F F F W G L +L+ + Sbjct: 161 IEKFLDTSPWS--SLIEELVEFHKQNGFGIFARYKGFSW--DGNNLVGIENLDPIRLDSL 216 Query: 60 EAVDVHCHSNVNNSNPT-----IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 +D V N+ + + RG GK++ ++ + + Sbjct: 217 VNIDRQKKIVVENTLAFLNGQRVNNILLYGSRGTGKSSTVKAILNEFSHMG----LRVVE 272 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 + QL + ++ + L +P + + LS L+ + + Sbjct: 273 VYKDQLYT--FPKLVRILRDVPLKFIIFVDDLSFEDIEVNYTKLKAILEGSLEAMPQNVV 330 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 Y+ V + + +DE ++ + + + + Sbjct: 331 IYATSNRRHLVKERFSDRNGLSDDEVHFRD-----TLEEKLSLADRFGIVVTYPSPT 382 >gi|154346446|ref|XP_001569160.1| helicase [Leishmania braziliensis MHOM/BR/75/M2904] gi|134066502|emb|CAM44296.1| putative helicase [Leishmania braziliensis MHOM/BR/75/M2904] Length = 1284 Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 62/233 (26%), Gaps = 23/233 (9%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI- 110 +Q + + +N+N G+GKT ++ + R Sbjct: 263 RHYQRSALRWMVHLYENNLNGILADEM--------GLGKTVQTIALLCYFAEYRNDWGPH 314 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + + + L AE+ +W L + + S+ Sbjct: 315 LIVVPTTVVLN--WKAELERWAPGLKVLTYIGSTKERQQLRKGWT----------SEDAF 362 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 C T + DEA + +L ++T Sbjct: 363 HVCVTSYNLVVQDRKAFRRRPWGFLVLDEAHHVKN-FMSLKWQSLFDLQAEYRLLLTGTP 421 Query: 231 -RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI 282 + + +F+ L ++ + E + E I R L+ D+ R Sbjct: 422 LQNSIMELWSLFHFLLPFASAFRSNVEFKEWFSNPMDEMITGRSTLNEDIVRR 474 >gi|59711051|ref|YP_203827.1| ATP-dependent RNA helicase SrmB [Vibrio fischeri ES114] gi|59479152|gb|AAW84939.1| ATP-dependent RNA helicase [Vibrio fischeri ES114] Length = 413 Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats. Identities = 41/303 (13%), Positives = 77/303 (25%), Gaps = 38/303 (12%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMSI 110 E + SA G GK+ L + P I Sbjct: 19 EEIDYQRPTQVQAMTIPEALEGKDILASAPTGTGKSAAFLLPALQHLDDFPRREPGPARI 78 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + + + A+ ++ L+ F + + Q + Sbjct: 79 LILTPTRELAIQV--ADEARQLAKYTRHKVFTITGGISYQDHADILATTQDI-------- 128 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP-NRFWIMTSN 229 + + DEA D+ ++ ++ + + S Sbjct: 129 VVATPGRLMEYIEAERFDCRAIETLILDEADRMLDMGFGPVVDRLSKECRWRKQTFLFSA 188 Query: 230 T---RRLNGWFYDIFNIP---------LEDWKRYQIDTR-TVEGIDSGFHEGIISRYGLD 276 T R + G+ D+ N P E K Q R + I++ Sbjct: 189 TLEGRGVEGFTADLLNEPAEINAEPSRRERKKITQWYHRADNMAHKIDLLKNILTEQAER 248 Query: 277 SDVA--RIEILGQFPQQEVNNFIPHNYIE-------EAMSREAIDDLYAPLIMGCDIAGE 327 S V E L + IP +I+ + D +++ D+A Sbjct: 249 SIVFVKTRERLAELRGHLETAKIPCAWIQGEMAQESRNNAISRFRDGTVNVLIATDVAAR 308 Query: 328 GGD 330 G D Sbjct: 309 GID 311 >gi|328721366|ref|XP_001942895.2| PREDICTED: transcriptional regulator ATRX homolog [Acyrthosiphon pisum] Length = 1045 Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats. Identities = 37/253 (14%), Positives = 86/253 (33%), Gaps = 23/253 (9%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLIS 103 L F +PH Q+E ++ + ++ +I A G+GKT L ++ + Sbjct: 334 LVKFLKPH--QVEGIKFLWNSVFESLARIKEHKGNGSILAHCMGLGKT-LQIIALVHTLF 390 Query: 104 TRPG---MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 P +++ I + T E KWL + F + + + + + + Sbjct: 391 RYPETGIKTVLVITPNAT--IENWCKEFHKWLQDIDEEKNFLVLNFTDSKTYEGRKNIVD 448 Query: 161 SMGIDSKHYTITCRTYS--------EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212 D + + + ++ P G + V DE + +I Sbjct: 449 EWKRDHGVLVTSYQLFRSVVNYKNIDKFPTISEGLVDPGPDLVICDE-GHILKNHSTAIS 507 Query: 213 GFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISR 272 + R ++T + N ++ ++ + + + + + F I + Sbjct: 508 KSVNRIKTLRRIVLTGTPLQNN---LREYHCMVDFIRPNLLGSI--KDFTNRFINPITNG 562 Query: 273 YGLDSDVARIEIL 285 DS+V ++I+ Sbjct: 563 QYSDSNVRDVKIM 575 >gi|257466094|ref|ZP_05630405.1| ATP-dependent helicase DinG [Fusobacterium gonidiaformans ATCC 25563] gi|315917251|ref|ZP_07913491.1| ATP-dependent helicase DinG [Fusobacterium gonidiaformans ATCC 25563] gi|317058656|ref|ZP_07923141.1| ATP-dependent helicase DinG [Fusobacterium sp. 3_1_5R] gi|313684332|gb|EFS21167.1| ATP-dependent helicase DinG [Fusobacterium sp. 3_1_5R] gi|313691126|gb|EFS27961.1| ATP-dependent helicase DinG [Fusobacterium gonidiaformans ATCC 25563] Length = 698 Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 52/166 (31%), Gaps = 18/166 (10%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 + Q++ M A+ ++ K I AG G GKT L +I Sbjct: 22 RKEQVDMMNAIRESLEAD--------RKIIIEAGTGTGKTLAYLIPTLEWAIENK-KKVI 72 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 C N+ + L+ ++ ++ F + + L + +S + Sbjct: 73 CTTNTINLQEQLLFKDLP--IAKNIINKHFSYLLVKGRNNYICKRLFHNFILGNS----L 126 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASG---TPDIINKSILGF 214 T S E+ F + M F D+A I + I Sbjct: 127 DISTLSSEQKKQFDYLKSWGKMTEFGDKAELPFEVDSDIWEMIQSS 172 >gi|257452110|ref|ZP_05617409.1| ATP-dependent helicase DinG [Fusobacterium sp. 3_1_5R] Length = 692 Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 52/166 (31%), Gaps = 18/166 (10%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 + Q++ M A+ ++ K I AG G GKT L +I Sbjct: 16 RKEQVDMMNAIRESLEAD--------RKIIIEAGTGTGKTLAYLIPTLEWAIENK-KKVI 66 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 C N+ + L+ ++ ++ F + + L + +S + Sbjct: 67 CTTNTINLQEQLLFKDLP--IAKNIINKHFSYLLVKGRNNYICKRLFHNFILGNS----L 120 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASG---TPDIINKSILGF 214 T S E+ F + M F D+A I + I Sbjct: 121 DISTLSSEQKKQFDYLKSWGKMTEFGDKAELPFEVDSDIWEMIQSS 166 >gi|313227383|emb|CBY22530.1| unnamed protein product [Oikopleura dioica] Length = 1980 Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats. Identities = 23/175 (13%), Positives = 41/175 (23%), Gaps = 21/175 (12%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L FS + Q + + H + A G GKT ML + Sbjct: 1138 LYSFSHFNPIQTQVFHCLYHHDS-----------NALVGAPTGSGKTACAELSMLKVFRD 1186 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 P + IA + +K + W + +Q + Sbjct: 1187 YPNGKCVYIAPLKALVKERM----DDW------SKKLGGKLGKKLVEMTGDIAPDQKAIV 1236 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219 + T + + + DE + + T N Sbjct: 1237 SADIIITTPEKWDGISRSWQTRKYVRDVRLIVIDEIHMLGEDRGPVLESIVTRTN 1291 >gi|313216756|emb|CBY38004.1| unnamed protein product [Oikopleura dioica] Length = 1046 Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats. Identities = 23/175 (13%), Positives = 41/175 (23%), Gaps = 21/175 (12%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L FS + Q + + H + A G GKT ML + Sbjct: 204 LYSFSHFNPIQTQVFHCLYHHDS-----------NALVGAPTGSGKTACAELSMLKVFRD 252 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 P + IA + +K + W + +Q + Sbjct: 253 YPNGKCVYIAPLKALVKERM----DDW------SKKLGGKLGKKLVEMTGDIAPDQKAIV 302 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219 + T + + + DE + + T N Sbjct: 303 SADIIITTPEKWDGISRSWQTRKYVRDVRLIVIDEIHMLGEDRGPVLESIVTRTN 357 >gi|307166155|gb|EFN60404.1| Activating signal cointegrator 1 complex subunit 3 [Camponotus floridanus] Length = 2124 Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats. Identities = 21/177 (11%), Positives = 46/177 (25%), Gaps = 25/177 (14%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L +FS + Q + + + + A G GKT M + Sbjct: 1289 LYNFSHFNPIQTQIFHCLYHTDN-----------NVLLGAPTGSGKTIAAEIAMFRVFKQ 1337 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 P ++ IA + ++ ++ W L ++ L + + I Sbjct: 1338 YPDQKVVYIAPLKALVRER----INDWKIRLEEGLGKKVVEL--------TGDVSPDVKI 1385 Query: 165 DSKHYTITCRTYSEERPDTFVGPHN--THGMAVFNDEASGTPDIINKSILGFFTELN 219 + I + + + DE + + + N Sbjct: 1386 IAGANVIVTTPEKWDGISRSWQTRSYVKKVALIVIDEIHLLGEDRGPVLEVIISRTN 1442 >gi|302817541|ref|XP_002990446.1| hypothetical protein SELMODRAFT_160867 [Selaginella moellendorffii] gi|300141831|gb|EFJ08539.1| hypothetical protein SELMODRAFT_160867 [Selaginella moellendorffii] Length = 483 Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 56/212 (26%), Gaps = 27/212 (12%) Query: 2 PRLISTDQKLEQELHEMLMHAE-CVLSFKNF--VMRFFPWGIKGKPLEHFSQPHRWQLEF 58 P+ + ++E ++ + L+ S K F + P F +P + Q E Sbjct: 53 PKSEKLNDEVETKIEKELVEGNSLYTSAKTFEELKISEPLLRGIYSEMKFERPSKIQAET 112 Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN--AWMMLWLISTRPGMSIICIANS 116 + + NP A G GKTT + S +C+ + Sbjct: 113 LPLIM----------NPPHRNLVAQAHNGSGKTTCFVLGMLSRVNTSLHEPQ-ALCVCPT 161 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 + ++ E ++ S+ I Sbjct: 162 RELA----------LQNQAVLERMARFTQITSTCIIPPTENIKSSLRGHIHDQVIFGTPG 211 Query: 177 SEERPD-TFVGPHNTHGMAVFNDEASGTPDII 207 S ER H + DEA D Sbjct: 212 SLERAILNDRNLDVQHLNVLVFDEADHMLDQN 243 >gi|46447193|ref|YP_008558.1| putative ATP-dependent RNA helicase [Candidatus Protochlamydia amoebophila UWE25] gi|46400834|emb|CAF24283.1| putative ATP-dependent RNA helicase [Candidatus Protochlamydia amoebophila UWE25] Length = 515 Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats. Identities = 29/228 (12%), Positives = 49/228 (21%), Gaps = 17/228 (7%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 E + A G GKT L LI PG ++ + + Sbjct: 28 EAGFKIASPIQKQAIPVVLAGHDVVAQAHTGTGKTAAFGLPALHLIHDNPGSQLLVLTPT 87 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 E+ + L R S P + I Sbjct: 88 RELASQVS-DELFRLGRHLGIRTATICGGKSFRPQIEA---------LQRGVQVIVATPG 137 Query: 177 SEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFT--ELNPNRFWIMTSNTRRL 233 + + V DEA ++I FT + Sbjct: 138 RLQDLLESDSLPDFRPAIVVLDEADEMLDMGFLEAIQRIFTFLPAKRQTLLFSATMP--- 194 Query: 234 NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR 281 + + L+ + + D +I D + R Sbjct: 195 -SAIQKLAHQILKKPIFISVTQKETTNKDIKQVYYVIREDERDDAILR 241 >gi|332360308|gb|EGJ38121.1| ATP-dependent RNA helicase [Streptococcus sanguinis SK355] Length = 799 Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats. Identities = 19/175 (10%), Positives = 42/175 (24%), Gaps = 9/175 (5%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 FS P E + S + I++ + G GKT L+ + + Sbjct: 250 SFSHPTTSLNEIRSQIGERVKSRGEKDSTGIYRLDL--PTGAGKTNLSMRYAFHQLLDQN 307 Query: 107 GMSIICIANSETQLKNTLWAEVSKWL------SMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 I + L+ +E+ K + + + + + Sbjct: 308 KSRCFYITPFLSVLEQNA-SEIRKVIGEVGVLEHHSNVVKQTADNDEKEAAMSDYLIESW 366 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 +T + + + + DE P + Sbjct: 367 DSQTVLTSMVQFFQTLFKTKSANIRRFSSLANSVLILDEVQSLPIEVTTLFNLTM 421 >gi|321259457|ref|XP_003194449.1| DNA replication helicase dna2 [Cryptococcus gattii WM276] gi|317460920|gb|ADV22662.1| DNA replication helicase dna2, putative [Cryptococcus gattii WM276] Length = 1100 Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 37/118 (31%), Gaps = 3/118 (2%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTT A ++ G S++ + + + + L +L + ++ Sbjct: 650 GTGKTTTIAEII--KALVARGKSVLLTSYTHSAVDAILMKLTDVEFGVLRLGNIDKVHPD 707 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 H + E +D++ T + D + DEAS Sbjct: 708 VQHLTLEAYEASASMDQLDARLMTPPVVAATCLAIDHPLFFRRR-FDYCIVDEASQIT 764 >gi|225076382|ref|ZP_03719581.1| hypothetical protein NEIFLAOT_01426 [Neisseria flavescens NRL30031/H210] gi|224952288|gb|EEG33497.1| hypothetical protein NEIFLAOT_01426 [Neisseria flavescens NRL30031/H210] Length = 664 Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 52/199 (26%), Gaps = 17/199 (8%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + H +F + G GKT + L +I + + + Sbjct: 149 EILEHAVEQAAQPQG-LFTLTV--PTGGGKTFTSMAFALEHAKLHGMRRVIYVIPFTSII 205 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS-GWYAELLEQSMGIDSKHYTITCRTYS-- 177 + AE K L + E S A + + ++ I T Sbjct: 206 EQNA-AEFRKAFGELGEQAVLEHHSTFDDGKLQNEATKDKLRLASENWDAPIVVTTAVQF 264 Query: 178 -----EERPDTFVGPHNTHGMAVFNDEASGTPDI----INKSILGFFTELNPNRFWIMTS 228 +R HN G + DEA P I + I + + + Sbjct: 265 FESLFADRSSRCRKLHNIAGSVIILDEAQMLPLNLLLPIMQVIKELAQNYHCSVVMCTAT 324 Query: 229 NTR-RLNGWFYDIFNIPLE 246 + FY F E Sbjct: 325 QPAVQAENGFYRGFENMRE 343 >gi|115938662|ref|XP_797208.2| PREDICTED: similar to DEAD/H box 51 RNA helicase, partial [Strongylocentrotus purpuratus] gi|115969326|ref|XP_001196116.1| PREDICTED: similar to DEAD/H box 51 RNA helicase, partial [Strongylocentrotus purpuratus] Length = 720 Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats. Identities = 24/186 (12%), Positives = 45/186 (24%), Gaps = 12/186 (6%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI--ICIAN 115 +E++ H+ P ISA G GKT A ++ + R + + + Sbjct: 297 LLESLRDGIHTGHAGYRP--RDLCISAPTGSGKTLAYAIPIIQALMNRVVCRVRALVVLP 354 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 + + +S P + + + Sbjct: 355 TRDLATQV-YKIISALCKATPLKPVLIGGTKKFAQEQSLLVREIDGELHSLADIVVATPG 413 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEA----SGTPDIINKSILGFFTEL---NPNRFWIMTS 228 + G + H + DEA + N TS Sbjct: 414 RLVDNISQTAGFNLQHLRFLVIDEADRLMEHISQDWIAQVEKSAYTPLYDNGTTLPTFTS 473 Query: 229 NTRRLN 234 N +R Sbjct: 474 NRQRPG 479 >gi|172087482|ref|XP_001913283.1| putative helicase [Oikopleura dioica] gi|42601411|gb|AAS21435.1| putative helicase [Oikopleura dioica] Length = 2017 Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats. Identities = 23/175 (13%), Positives = 41/175 (23%), Gaps = 21/175 (12%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L FS + Q + + H + A G GKT ML + Sbjct: 1173 LYSFSHFNPIQTQVFHCLYHHDS-----------NALVGAPTGSGKTACAELSMLKVFRD 1221 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 P + IA + +K + W + +Q + Sbjct: 1222 YPNGKCVYIAPLKALVKERM----DDW------SKKLGGKLGKKLVEMTGDIAPDQKAIV 1271 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219 + T + + + DE + + T N Sbjct: 1272 SADIIITTPEKWDGISRSWQTRKYVRDVRLIVIDEIHMLGEDRGPVLESIVTRTN 1326 >gi|328785812|ref|XP_394691.4| PREDICTED: hypothetical protein LOC411217 [Apis mellifera] Length = 1084 Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats. Identities = 26/214 (12%), Positives = 58/214 (27%), Gaps = 23/214 (10%) Query: 23 ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82 + F M F + G + F +P QL+ + F + Sbjct: 19 KIQDDVTFFQMGFSQKILDGLSVCGFQRPSPIQLKAI------------PLGRCGFDLIM 66 Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGM-SIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 A G GKT + + L +I ++ +A + E++ ++ + Sbjct: 67 RAKSGTGKTLVFCIISLEMIDIDISSVQVLILAPT---------REIAVQIAQVFSSVGC 117 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 E++ L + +E + + DEA Sbjct: 118 EIKDLKVEVFIGGL-AIENDKKKVNNCQIAVGAPGRIRHLIDKGFLKVENVRLFVLDEAD 176 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 + + + + P ++ S+ Sbjct: 177 KLMETSFQKDINYIFSKLPLSKQVIASSATYPGD 210 >gi|260495554|ref|ZP_05815679.1| DNA/RNA helicase [Fusobacterium sp. 3_1_33] gi|260196896|gb|EEW94418.1| DNA/RNA helicase [Fusobacterium sp. 3_1_33] Length = 942 Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats. Identities = 29/194 (14%), Positives = 65/194 (33%), Gaps = 35/194 (18%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P+ Q+E ++ ++ N + + + G GKT L+A + + I Sbjct: 210 PNSMQVEALKNLEETRKEND--------RALLISATGTGKTYLSA----FDVKQAKAKKI 257 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + +A+ K L + +L ++ E+ + + I+ K Sbjct: 258 LFVAHR----KVILERSKISYQRILKNKKM---------------EIFDNNFQINGKDEV 298 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 + + + + + DE + +SI +F P +T+ Sbjct: 299 VFAMVQTLNKEKNLNIFPKEYFDYIIIDEVHHSGAKTYQSIFEYF---KPKFLLGITATP 355 Query: 231 RRLNGW-FYDIFNI 243 R + + Y +FN Sbjct: 356 ERTDDFNIYQLFNY 369 >gi|271961946|ref|YP_003336142.1| ATP-independent RNA helicase [Streptosporangium roseum DSM 43021] gi|270505121|gb|ACZ83399.1| ATP-independent RNA helicase [Streptosporangium roseum DSM 43021] Length = 561 Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats. Identities = 27/204 (13%), Positives = 44/204 (21%), Gaps = 28/204 (13%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 + +P Q E + A G GKT A +L ++ Sbjct: 29 GYEEPTPIQREAI------------PPLLEGRDLLGQAATGTGKTAAFALPVLQRMTRDG 76 Query: 107 GM---SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163 G + + + A H+ + P + Q Sbjct: 77 GGGEPMALVLVPTRELAVQVSEA----------FHHYGRELGARVLPIYGGQPIGRQLRA 126 Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFF--TELNP 220 + + V DEA + I T N Sbjct: 127 LQQGVDIVVATPGRALDHIGRGTLRLDDLEMVVLDEADEMLDMGFAEDIEAILQETPENR 186 Query: 221 NRFWIMTSNTRRLNGWFYDIFNIP 244 + R+NG N P Sbjct: 187 QTVLFSATMPPRINGIARRHLNDP 210 >gi|227891006|ref|ZP_04008811.1| DNA/RNA helicase [Lactobacillus salivarius ATCC 11741] gi|227867415|gb|EEJ74836.1| DNA/RNA helicase [Lactobacillus salivarius ATCC 11741] Length = 986 Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 61/195 (31%), Gaps = 31/195 (15%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 + +P++ Q E ++ + K I + G GKT L A + Sbjct: 210 EDNSNYSIIKPNKMQKEALKNL-------QKLRLLRETKGLIISATGTGKTYLAALDV-- 260 Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 + +A+ E LK +L + ++ + + Sbjct: 261 --KNYNPKRFLFVAHREQILKKSL-------------DSFHKVLGGDKKTNYGIISGNTK 305 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220 D+K+ T +T S+ + + DEA I +L +FT P Sbjct: 306 --NTDAKYLFATVQTLSK--VENLNQFKRDEFDYILIDEAHHVGSKIYGKLLDYFT---P 358 Query: 221 NRFWIMTSNTRRLNG 235 + MT+ R + Sbjct: 359 DFLLGMTATPERSDD 373 >gi|166365110|ref|YP_001657383.1| hypothetical protein MAE_23690 [Microcystis aeruginosa NIES-843] gi|166087483|dbj|BAG02191.1| hypothetical protein MAE_23690 [Microcystis aeruginosa NIES-843] Length = 698 Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 46/148 (31%), Gaps = 15/148 (10%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSET---QLKNTL--WAEVSKWLSMLPHRHWF 141 G GKT + A + +L +T P +I + + Q K+ + ++ K + Sbjct: 215 GSGKTIVLALKVAYLHATHPDWNIAVTFYTRSLKDQYKDLITRFSYEHKNSEPDWEKVKI 274 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF---------VGPHNTHG 192 S G Y EL ++ TYS E P F H + Sbjct: 275 IHAWGSPKIEGIYYELCKRHNIEYLGFSQADNLTYSHEEPFDFACQKAFREIKKFH-QYY 333 Query: 193 MAVFNDEASGTPDIINKSILGFFTELNP 220 + DEA P + + Sbjct: 334 DLILIDEAQDFPQDFLRLCYEILKDDKR 361 >gi|119493757|ref|ZP_01624327.1| hypothetical protein L8106_27229 [Lyngbya sp. PCC 8106] gi|119452502|gb|EAW33688.1| hypothetical protein L8106_27229 [Lyngbya sp. PCC 8106] Length = 723 Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats. Identities = 29/261 (11%), Positives = 58/261 (22%), Gaps = 42/261 (16%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q + V + ++ + + + G GKT M+ +++R ++ Sbjct: 31 RPYQQTIKDEVYNQLNQGIH-------RILVYSPTGSGKTATFCSMIADFLASR--HRVL 81 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + + F ++ + + Sbjct: 82 LLMH-----------------------REFLIEQTVKTLRRFGVPTEAIGIIKAGYSENR 118 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 H + V DEA S N I + + Sbjct: 119 DRPLQLAGIQSLSRRQHPQNIDIVIGDEAHTI---CWYSEYKKLLNSLNNSIQIGFTASP 175 Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGII---SRYGLDSDVARIEILGQF 288 F E + E + GF + +D + G F Sbjct: 176 WRLKPHKQYFG---EWFDTIVKGPTIQELMSLGFLARVRYFGKGGLVDLTQLDTDSTGDF 232 Query: 289 PQ-QEVNNFIPHNYIEEAMSR 308 Q F+ E R Sbjct: 233 KTLQMEQKFLDAGICEAVRQR 253 >gi|291455770|ref|ZP_06595160.1| DNA repair helicase Rad25 [Bifidobacterium breve DSM 20213] gi|291382698|gb|EFE90216.1| DNA repair helicase Rad25 [Bifidobacterium breve DSM 20213] Length = 1068 Score = 41.9 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 34/221 (15%), Positives = 64/221 (28%), Gaps = 35/221 (15%) Query: 16 HEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFS-QPHRWQLEFMEAVDVHCHSNVNNSN 74 + FK P + LE QP+ Q E + + + Sbjct: 221 LTEEWIKQYEEDFK---KYAPPRHEILQSLEGHDIQPNAMQQEALANLKKIREQGEH--- 274 Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 + I + G GKT L+A + + ++ IA Q + L + + + Sbjct: 275 ----RAIIVSATGTGKTHLSA----FDVRECQPKRMLYIA----QQQMILQTAMKSYQKV 322 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 L S D ++ T +T +P+ + Sbjct: 323 LGCD------------ESELGLYSGTSKQQDRRYVFATVQTMR--QPEVLAQFKSDEFDY 368 Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 V DE + ++ F + + MT+ R +G Sbjct: 369 VLVDEVHHAGAEGYQRVINHFKDAD--FMLGMTATPERTDG 407 >gi|190892203|ref|YP_001978745.1| hypothetical protein RHECIAT_CH0002615 [Rhizobium etli CIAT 652] gi|190697482|gb|ACE91567.1| hypothetical conserved protein [Rhizobium etli CIAT 652] Length = 930 Score = 41.9 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 19/211 (9%), Positives = 51/211 (24%), Gaps = 32/211 (15%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q + ++ + + + ++A G GKT L +M R G + + Sbjct: 11 RAYQQKILDNLANLIGDDSLH--------IVAAP-GSGKTILGLEVM-----RRLGEATL 56 Query: 112 CIANS------ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 +A S Q ++ + ++++ + Sbjct: 57 ILAPSKTIRDQWAQRLRAMFLPANNAEPDWISHDVRAPSTITIITYQALHAAFSGHTSEE 116 Query: 166 SKHYTITCRTYSEERPDTFVG------------PHNTHGMAVFNDEASGTPDIINKSILG 213 + + + + + + DEA + K++ Sbjct: 117 EIIDSEEEHSDGARSVEASKQQAEKARKKIIAKLRDENVRTLVLDEAHHLRNEWWKALTM 176 Query: 214 FFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244 L +T+ Sbjct: 177 LKQALGKPTVVALTATPPYDVDPQEWDRYQA 207 >gi|188581754|ref|YP_001925199.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi BJ001] gi|179345252|gb|ACB80664.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi BJ001] Length = 506 Score = 41.9 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 34/305 (11%), Positives = 70/305 (22%), Gaps = 42/305 (13%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST------RPGMS 109 E + A G GKT A +L +S R G Sbjct: 18 EEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILHRLSLENRRAPRRGCR 77 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ ++ + S + LP + + + Q I Sbjct: 78 VLVLSPTRELASQIA-ESFSDYGRHLP------YTNTVVF---GGVNINRQERAIAPGVD 127 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG---FFTELNPNRFWIM 226 + + DEA D+ L + Sbjct: 128 ILVATPGRLIDLVDRRALTLDGVEILVLDEADQMLDLGFIHALKRIVKMLPARRQSLFFS 187 Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFH-------EGIISRYGLDSDV 279 + + + G P++ T E +D + +++ D + Sbjct: 188 ATMPKNIAGLADQYLTNPVQ--VAVTPVATTAERVDQQVIFCHTGAKQALLNHVLRDPKI 245 Query: 280 ARIEILGQFPQQEVNNFIPHN---YIEEAMSREAIDDLYA-----------PLIMGCDIA 325 R+ + + + + A+ +++ DIA Sbjct: 246 ERVLVFTRTKHGADRVVRGLDKAGIVGAAIHGNKSQPQRERALAAFRDGSCRVLVATDIA 305 Query: 326 GEGGD 330 G D Sbjct: 306 ARGID 310 >gi|304389926|ref|ZP_07371883.1| superfamily II DNA or RNA helicase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326819|gb|EFL94060.1| superfamily II DNA or RNA helicase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 931 Score = 41.9 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 32/316 (10%), Positives = 71/316 (22%), Gaps = 42/316 (13%) Query: 39 GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98 G P+E W + H G GK+ + + Sbjct: 15 GALTDPVEVLLAFQEWAESTGRPLYPHQQEAAERLILEDKHLIAPTPTGSGKSLIGVAAI 74 Query: 99 LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 LW ++ G A + + + V F ++ + Sbjct: 75 LWSLAR--GGVSYYTAPLKALVSEKFFDLV----------DLFGAANVGMVTGDGSVNAD 122 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG--TPDIINKSILGFFT 216 + ++ + ++ + V DE P+ T Sbjct: 123 APIICATAEILANQALRWGDDL----------NVDTVVMDEFHYYADPERGWAWQAPLLT 172 Query: 217 ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLD 276 +++ S T WF + ++ + + + Sbjct: 173 L--TKTRFVLMSATLGDTSWFAKNLREVTGREVAVLDSAKRPVPLEMSYAAEPLEKILQG 230 Query: 277 SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 + + + + A EA L +G D D + Sbjct: 231 LA---------NQDRLPAYVVHPS--QRAAVEEAERIASLDLRLGLD-----SDTAARLK 274 Query: 337 RRGNIIEHIFDWSAKL 352 + N + + L Sbjct: 275 DQVNTVRFHSSFGKTL 290 >gi|256847916|ref|ZP_05553361.1| type III restriction protein [Lactobacillus coleohominis 101-4-CHN] gi|256715605|gb|EEU30581.1| type III restriction protein [Lactobacillus coleohominis 101-4-CHN] Length = 683 Score = 41.9 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 24/190 (12%), Positives = 49/190 (25%), Gaps = 22/190 (11%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 Q + + A+ H I A G GKT + ++ + + Sbjct: 422 RPKQKQAIMAIKEHDLGM------------ICAQTGFGKTVIGCALI-----AKRQARTL 464 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 I +E K W + + + E E++ + S I Sbjct: 465 VIVPTENIAKQ--WQQTGLKFLNIHDNPFEETTKTGRLVRKKKVEIISGNRNRPSHLVDI 522 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 D + + DE + + + + N +T+ Sbjct: 523 VNYRKLTRMSDDDRKDFYQNYSQIIIDECHHISAVTFEKV---LVQANVKYIVGLTATPE 579 Query: 232 RLNGWFYDIF 241 R +G + Sbjct: 580 RKDGLEQFMH 589 >gi|198425548|ref|XP_002130172.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Ciona intestinalis] Length = 636 Score = 41.9 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 18/155 (11%), Positives = 40/155 (25%), Gaps = 2/155 (1%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIIC 112 Q + + + ++++ +SA G GKT A ++ + R P + Sbjct: 201 QQKVIPYILRDAQRSISHQLFPPRDLCVSAPTGSGKTIAFALPIVQALLQRVVPATRALV 260 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 ++ + VS + SL ++ + Sbjct: 261 VSPTRELSAQIYKVFVSLCRNTQLKCILITAAKGSLLQEQRALLNFGKTGLACPADIVVA 320 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207 + + DEA + I Sbjct: 321 TPGRLADHLSQTSAFSLDKLRFLVIDEADRMMEQI 355 >gi|302838949|ref|XP_002951032.1| hypothetical protein VOLCADRAFT_117719 [Volvox carteri f. nagariensis] gi|300263727|gb|EFJ47926.1| hypothetical protein VOLCADRAFT_117719 [Volvox carteri f. nagariensis] Length = 480 Score = 41.9 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 19/157 (12%), Positives = 45/157 (28%), Gaps = 8/157 (5%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + G+GKT + A +ML P I+ +A ++ ++ + A + +P Sbjct: 172 NTLVCLPTGLGKTLVAAVVMLNYYRWFPDGKIVFVAPTKPLVEQQMKACKEQTC--IPKA 229 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 ++ + A + + T + + + + + D Sbjct: 230 DIVQLTATRGPGGEGRAAEWS-----QRRVFFCTPQILENDIANGTCPKEKYVLVLLVVD 284 Query: 199 EAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 E + L + S T + Sbjct: 285 ECHRALGKAAPVTALQTLRSEQLRFRVVGLSATPGSS 321 >gi|261494476|ref|ZP_05990962.1| putative helicase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309860|gb|EEY11077.1| putative helicase [Mannheimia haemolytica serotype A2 str. OVINE] Length = 762 Score = 41.9 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 49/179 (27%), Gaps = 14/179 (7%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 +++ G GKT + L II + + ++ AE K L Sbjct: 264 SLTVPTGGGKTFTSMAFALEHAKQYGLCRIIYVIPFTSIIEQNA-AEFRKAFGELGEEAV 322 Query: 141 FEMQSLSLHPSGW-YAELLEQSMGIDSKHYTITCRTYS-------EERPDTFVGPHNTHG 192 E S H S + + + ++ + T +R HN G Sbjct: 323 LEHHSTFDHDSLPDKSSRDKLKLASENWDAPVVVTTAVQFFESLFADRSSRCRKLHNIAG 382 Query: 193 MAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTR-RLNGWFYDIFNIPLE 246 + DEA P I +I + + FY F E Sbjct: 383 SVIILDEAQMLPLNLLRPIMAAIDELARNYQCSVVLCTATQPAIHQANGFYKGFENVRE 441 >gi|258507444|ref|YP_003170195.1| UvrD/REP helicase [Lactobacillus rhamnosus GG] gi|257147371|emb|CAR86344.1| UvrD/REP helicase [Lactobacillus rhamnosus GG] gi|259648798|dbj|BAI40960.1| hypothetical protein [Lactobacillus rhamnosus GG] Length = 595 Score = 41.9 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 2/75 (2%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIIC 112 Q+E + H + I + + AG G GKTT+ A +L L++TR I C Sbjct: 5 QIESILLHGAHFTAEQREVIQAIGRIDVVAGPGSGKTTVLAAKVLRLLTTRNYEDKGICC 64 Query: 113 IANSETQLKNTLWAE 127 I ++ +K L Sbjct: 65 ITHTNVAVKEILARL 79 >gi|238786939|ref|ZP_04630739.1| Terminase, ATPase subunit [Yersinia frederiksenii ATCC 33641] gi|238724727|gb|EEQ16367.1| Terminase, ATPase subunit [Yersinia frederiksenii ATCC 33641] Length = 587 Score = 41.9 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 34/328 (10%), Positives = 71/328 (21%), Gaps = 40/328 (12%) Query: 60 EAVDVHCHSNVNNSNPTIFKC-AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 E++ + + F+ + R IG T +W L G + + ++ S+ Sbjct: 142 ESMFGYQRNWYEAGLSPDFRIRNLLKSRQIGATYFFSWEALLDALDT-GRNQMFVSASKA 200 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH-------YTI 171 Q + + E+ L + + + + Sbjct: 201 QAHQ-FKNYIVAAARQVDVDLRGEVIILPNGAEMHFLGTNASTAQGRPGNLYLDEYFWIP 259 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP---NRFWIMTS 228 + + S T G R I S Sbjct: 260 GFQKLRRAASGMASQKRYRST---YFSTPSSTSHEAYPFWAGTLFNKGKAKDKRIEIDVS 316 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 R G + + +++ ++G F + D D + F Sbjct: 317 YPRLAAGRLCED-----KQYRQIVTIEDALKGGCDLFDIDELRNENSDED-FENLFMCGF 370 Query: 289 PQQEVNNFIPHNYIEEAMSREAIDD----------LYAPLIMGCDIAGEGGDKTVVVFRR 338 + F + P+ +G D A G D Sbjct: 371 IDDNASTFKLAEMQRCMVDSWEKWSDVKLLALRPFGDRPVWIGYDPASTG-DSAGCAVIA 429 Query: 339 GNI-------IEHIFDWSAKLIQETNQE 359 + + W + Sbjct: 430 PPVVAGGKFRVLERHQWKGMDFADQASN 457 >gi|296412400|ref|XP_002835912.1| hypothetical protein [Tuber melanosporum Mel28] gi|295629709|emb|CAZ80069.1| unnamed protein product [Tuber melanosporum] Length = 1952 Score = 41.9 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 17/126 (13%), Positives = 30/126 (23%), Gaps = 16/126 (12%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML--- 135 + + G GKT M W PG ++ IA + ++ V W + L Sbjct: 1131 NVLLGSPTGSGKTIACELAMWWAFRENPGSKVVYIAPMKALVRER----VKDWNARLTAP 1186 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 E+ + + + + V Sbjct: 1187 MSLKLVELTGDNTPDTRTIHDADIIITTPEKWDGISRSWQTRNYV---------RQVSLV 1237 Query: 196 FNDEAS 201 DE Sbjct: 1238 IIDEIH 1243 >gi|290975853|ref|XP_002670656.1| predicted protein [Naegleria gruberi] gi|284084217|gb|EFC37912.1| predicted protein [Naegleria gruberi] Length = 919 Score = 41.9 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 20/154 (12%), Positives = 43/154 (27%), Gaps = 12/154 (7%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH------RHW 140 G GKT + + +L ++ P I+ A S + V L+ L Sbjct: 478 GTGKTFVVSQCILEIMKQDPNHKILICAPSNQAADIIVERLVDSNLNPLVKMMRMNSVQR 537 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN---THGMAVFN 197 + +L + + S ++ H + Sbjct: 538 DPNTFTKRWIIKFSNKLDQGFEIPELHEIAKYDVIISTCTSSGYLYSKGVKPGHFSHIII 597 Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 DE+ + + L F+ N ++ + + Sbjct: 598 DESG---ESVIPEALIPFSLKGDNTVVVLAGDPK 628 >gi|225559758|gb|EEH08040.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR] Length = 1612 Score = 41.9 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 36/121 (29%), Gaps = 9/121 (7%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTT A ++ G S++ + + T + N L + L ++ Sbjct: 1165 GTGKTTTIAHII--RALASQGKSVLLTSYTHTAVDNILLKIKDDNIRTLRLGATTKIHPD 1222 Query: 147 SLH---PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + E +E+ I + P ++ DEAS Sbjct: 1223 VRKFADLAATPKETIEELKDIYENSRIVATTCLGINHP----IFNSRMFDFCIVDEASQI 1278 Query: 204 P 204 Sbjct: 1279 T 1279 >gi|28900445|ref|NP_800100.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus RIMD 2210633] gi|260362335|ref|ZP_05775298.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus K5030] gi|260877397|ref|ZP_05889752.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AN-5034] gi|260898434|ref|ZP_05906930.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus Peru-466] gi|28808756|dbj|BAC61933.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus RIMD 2210633] gi|308085113|gb|EFO34808.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus Peru-466] gi|308090744|gb|EFO40439.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AN-5034] gi|308111119|gb|EFO48659.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus K5030] gi|328470398|gb|EGF41309.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus 10329] Length = 430 Score = 41.9 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 26/272 (9%), Positives = 74/272 (27%), Gaps = 38/272 (13%) Query: 87 GIGKTTLNAWMMLWLIST------RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 G GKT + M+ + R + +A + E+++ ++ + + Sbjct: 48 GTGKTAAFSLPMIQQLLDSGRTASRKTARALILAPT---------RELAEQIADNI-KAY 97 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + LS+ ++ Q +++ + E + + DEA Sbjct: 98 TKYTDLSVVAVFGGRKMSSQVSALENGVDILVATPGRLEEHIEQGNVSVANLEFLVFDEA 157 Query: 201 SGTPDIIN--KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 D+ + + ++ T + + + +T Sbjct: 158 DRILDMGFIHAVRKIMLDVDTDPQIMMFSATTSSQLNLLAKDILRKPKRIEVERANTTAH 217 Query: 259 EG------IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY----------- 301 +D ++S + ++ + + + + Sbjct: 218 TVAHVLYPVDQERKTELLSELIGRKNWQQVLVFVNYKETANDVVKELKLDGIKAVVCHGD 277 Query: 302 -IEEAMSREAIDDLYA--PLIMGCDIAGEGGD 330 + A R + +++ D+A G D Sbjct: 278 RAQSARRRALEEFKTGKVRVMVATDVAARGLD 309 >gi|255307197|ref|ZP_05351368.1| ATP-dependent RNA helicase [Clostridium difficile ATCC 43255] Length = 497 Score = 41.9 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 21/235 (8%), Positives = 56/235 (23%), Gaps = 13/235 (5%) Query: 60 EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-SIICIANSET 118 + V + + G GKT A + I+ + + + Sbjct: 23 YNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTASFAIPLCENINVDYNNIQALIVVPTRE 82 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 E+S + R S+ + + + + Sbjct: 83 LALQV-KDEISDIGRLKKVRCSAIFGKQSIKDQIA---------ELKQRVHIVVATPGRI 132 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNT-RRLNGW 236 + + DEA + + L + + S T + Sbjct: 133 LDHINRGSIKLENVKYLVIDEADKMFNKGFVEQMEKILLNLPKEKIVSLFSATIDEEIKY 192 Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291 + + + + ++ T + + I + + + I + P+ Sbjct: 193 ICEKYMLDYSVINIEENESDTNQKTRQIDDKIIKANGREKYILLKELIYSENPKS 247 >gi|255101321|ref|ZP_05330298.1| ATP-dependent RNA helicase [Clostridium difficile QCD-63q42] Length = 497 Score = 41.9 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 21/235 (8%), Positives = 56/235 (23%), Gaps = 13/235 (5%) Query: 60 EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-SIICIANSET 118 + V + + G GKT A + I+ + + + Sbjct: 23 YNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTASFAIPLCENINVDYNNIQALIVVPTRE 82 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 E+S + R S+ + + + + Sbjct: 83 LALQV-KDEISDIGRLKKVRCSAIFGKQSIKDQIA---------ELKQRVHIVVATPGRI 132 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNT-RRLNGW 236 + + DEA + + L + + S T + Sbjct: 133 LDHINRGSIKLENVKYLVIDEADKMFNKGFVEQMEKILLNLPKEKIVSLFSATIDEEIKY 192 Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291 + + + + ++ T + + I + + + I + P+ Sbjct: 193 ICEKYMLDYSVINIEENESDTNQKTRQIDDKIIKANGREKYILLKELIYSENPKS 247 >gi|126699799|ref|YP_001088696.1| ATP-dependent RNA helicase [Clostridium difficile 630] gi|115251236|emb|CAJ69067.1| ATP-dependent RNA helicase [Clostridium difficile] Length = 497 Score = 41.9 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 21/235 (8%), Positives = 56/235 (23%), Gaps = 13/235 (5%) Query: 60 EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-SIICIANSET 118 + V + + G GKT A + I+ + + + Sbjct: 23 YNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTASFAIPLCENINVDYNNIQALIVVPTRE 82 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 E+S + R S+ + + + + Sbjct: 83 LALQV-KDEISDIGRLKKVRCSAIFGKQSIKDQIA---------ELKQRVHIVVATPGRI 132 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNT-RRLNGW 236 + + DEA + + L + + S T + Sbjct: 133 LDHINRGSIKLENVKYLVIDEADKMFNKGFVEQMEKILLNLPKEKIVSLFSATIDEEIKY 192 Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291 + + + + ++ T + + I + + + I + P+ Sbjct: 193 ICEKYMLDYSVINIEENESDTNQKTRQIDDKIIKANGREKYILLKELIYSENPKS 247 >gi|322799954|gb|EFZ21080.1| hypothetical protein SINV_07642 [Solenopsis invicta] Length = 1251 Score = 41.9 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 31/237 (13%), Positives = 68/237 (28%), Gaps = 29/237 (12%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPL-EHFSQPHRWQLEFM 59 M + I+ D +Q +++ + F P I + F++P QL+ + Sbjct: 1 MAQYIAHDINKKQRTNDIKIEENV-----TFDQMRLPQEILDGLMSAGFNKPSPIQLKAI 55 Query: 60 EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI-STRPGMSIICIANSET 118 F + A G GKT + + + L + + ++ +A + Sbjct: 56 ------------PLGRCGFDLIVRAKSGTGKTLVFSVIALETLNISIQLPQVLIVAPTRE 103 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 + V K + E + +E+ +K + Sbjct: 104 IAIQITY--VIKAIGSQIEGLGIEYFVGGI--------SIEEDKKKLNKCHVAIGAPGRI 153 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 + DEA +I + + F P+ ++ S+ Sbjct: 154 RHLIEKGFLQVSKVRLFVLDEADKLLEISFQKDINFIFSKLPSSKQVIASSATYPGD 210 >gi|291568725|dbj|BAI90997.1| putative helicase [Arthrospira platensis NIES-39] Length = 1044 Score = 41.9 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 44/148 (29%), Gaps = 15/148 (10%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 QL+ + V + ++ G+GKT ++ +L+ + ++ +A Sbjct: 299 QLKILRRVAETFPRSFLIADEV----------GLGKTVETGAILRYLLVSGRVKRVLVLA 348 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 + Q + W E + W Q P G + + E + + Sbjct: 349 PASVQSQ---WHEELR--EKFNLHFWSYGQKEFKDPYGAVSTVREAENPWNRHPLIVASS 403 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASG 202 R + V DEA Sbjct: 404 HLVRRRERSQELLAAEPWDLVVLDEAHH 431 >gi|260174972|ref|ZP_05761384.1| hypothetical protein BacD2_24155 [Bacteroides sp. D2] Length = 481 Score = 41.9 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 31/280 (11%), Positives = 76/280 (27%), Gaps = 12/280 (4%) Query: 58 FMEAVDVHCHSNVNNSNPTI-FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 F++ V + + +I ++ A+S GK+ +++ + W+ P S++ Sbjct: 47 FLKKVAEAFMRVYESYSASIIYRLAVSMPPRAGKSYISSLFIAWMYGHFPEESVM----- 101 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 +TL+ ++S + F+ +H G + S+ + Sbjct: 102 RNCCSDTLYNKLSYDTRDVVKSRRFKEIFPDIHLKGDKQNVKSWSVEGARQVSYFGGGVG 161 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP---NRFWIMTSNTRRL 233 T + ++A + T + + I Sbjct: 162 GTVIGFGASMLAMTDDLYKSLEDALSDNNNEKVWSWKQGTHDSRIEGSCCMIDIGTRWSS 221 Query: 234 NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF---PQ 290 N + + + L S+ + ++ P Sbjct: 222 NDVLGRMEEAGKYNEIIRIAALDENDETFCADVHTTEYYKELRSETDESIWMAEYMQEPF 281 Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGD 330 + P + + + + CD A +G D Sbjct: 282 EAKGLLFPKSSLMRFKLADIAGKKPDGTLGACDTADKGDD 321 >gi|158520755|ref|YP_001528625.1| hypothetical protein Dole_0738 [Desulfococcus oleovorans Hxd3] gi|158509581|gb|ABW66548.1| conserved hypothetical protein [Desulfococcus oleovorans Hxd3] Length = 631 Score = 41.9 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 32/228 (14%), Positives = 61/228 (26%), Gaps = 27/228 (11%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q E + +D + ++ V + T ++ I G GK+ + A + L G ++ + Sbjct: 217 QREPL-DMDKNQNNLVTSRTDTGYRR-IKGPAGSGKSLVLAARAVELA--NEGKDVLVVN 272 Query: 115 NSETQ---LKN--------------TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 + T L++ W W + + F+ + +L AE Sbjct: 273 YTITLPHYLRDLAARCHRNGEGRGSITWLNFHAWCKRVCIQAGFKKEYDNLFAEIRSAER 332 Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA--VFNDEASGTPDIINKSILGFF 215 E + + R + + V DEA + Sbjct: 333 REPDKKNNGLKEIMDHRIPDLVDRIISRNLGHPDTIYDAVLLDEAQDFQLKWWNLLRKVC 392 Query: 216 TELNPNRFWI----MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 + T R+ DW R R Sbjct: 393 RQGGEKLLVADATQDIYGTARVWTEEAMHGAGFRGDWVRLATSYRLPP 440 >gi|315923207|ref|ZP_07919447.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313697082|gb|EFS33917.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 471 Score = 41.9 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 31/280 (11%), Positives = 76/280 (27%), Gaps = 12/280 (4%) Query: 58 FMEAVDVHCHSNVNNSNPTI-FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 F++ V + + +I ++ A+S GK+ +++ + W+ P S++ Sbjct: 37 FLKKVAEAFMRVYESYSASIIYRLAVSMPPRAGKSYISSLFIAWMYGHFPEESVM----- 91 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 +TL+ ++S + F+ +H G + S+ + Sbjct: 92 RNCCSDTLYNKLSYDTRDVVKSRRFKEIFPDIHLKGDKQNVKSWSVEGARQVSYFGGGVG 151 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP---NRFWIMTSNTRRL 233 T + ++A + T + + I Sbjct: 152 GTVIGFGASMLAMTDDLYKSLEDALSDNNNEKVWSWKQGTHDSRIEGSCCMIDIGTRWSS 211 Query: 234 NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF---PQ 290 N + + + L S+ + ++ P Sbjct: 212 NDVLGRMEEAGKYNEIIRIAALDENDETFCADVHTTEYYKELRSETDESIWMAEYMQEPF 271 Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGD 330 + P + + + + CD A +G D Sbjct: 272 EAKGLLFPKSSLMRFKLADIAGKKPDGTLGACDTADKGDD 311 >gi|189425674|ref|YP_001952851.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ] gi|189421933|gb|ACD96331.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ] Length = 439 Score = 41.9 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 24/172 (13%), Positives = 49/172 (28%), Gaps = 26/172 (15%) Query: 35 FFPWGIKGKPLEHFSQPHRWQLEFMEAV-DVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93 F P + G ++ P Q + + + H A G GKT Sbjct: 8 FHPKVVAGINALGYTTPTPIQAQAIPKIMAGHDLMG-------------LAQTGTGKTAA 54 Query: 94 NAWMMLWLISTRPGMSI--ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151 A +L + P + + IA + + +ML ++S++++ Sbjct: 55 FALPILHRLMQGPRKQVRALVIAPTRELAEQI-------NDAMLELGQQTRLKSITVY-- 105 Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + Q + + + T+ + DEA Sbjct: 106 -GGVNVNPQIEKLKNGVEIVVACPGRLLDHINQGTIDLTNLELLVLDEADQM 156 >gi|255066890|ref|ZP_05318745.1| CRISPR-associated helicase Cas3 domain protein [Neisseria sicca ATCC 29256] gi|255048965|gb|EET44429.1| CRISPR-associated helicase Cas3 domain protein [Neisseria sicca ATCC 29256] Length = 760 Score = 41.9 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 46/175 (26%), Gaps = 14/175 (8%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 G GKT + L +I + + ++ AE K L + E Sbjct: 266 PTGGGKTFTSMAFALEHAKRYDMRRVIYVIPFTSIIEQNA-AEFRKAFGELGEQAVLEHH 324 Query: 145 SLSLHPS-GWYAELLEQSMGIDSKHYTITCRTYS-------EERPDTFVGPHNTHGMAVF 196 S A + + ++ I T +R HN G + Sbjct: 325 STFDDGKLQNEATKDKLRLASENWDAPIVVTTAVQFFESLFADRSSRCRKLHNIAGSVII 384 Query: 197 NDEASGTPDI----INKSILGFFTELNPNRFWIMTSNTR-RLNGWFYDIFNIPLE 246 DEA P I + I + + + FY F E Sbjct: 385 LDEAQMLPLNLLLPIMQVIKELAQNYRCSVVMCTATQPAVQAENGFYRGFENVRE 439 >gi|1294759|gb|AAB41467.1| terminase [Lactococcus phage phi41] Length = 423 Score = 41.9 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 26/208 (12%), Positives = 59/208 (28%), Gaps = 20/208 (9%) Query: 85 GRGIGKTTLNA-WMMLWLIS-TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 GRG GK++L A ++ W+I + G + IA TQ ++ Sbjct: 101 GRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVF---------------DQV 145 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 + + + +T +++ + + + DE Sbjct: 146 RNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDEVHT 205 Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262 + I +S+ W T +++ +E +K + Sbjct: 206 YGEDITESVNKG--SRQKQDNWQSIYITSGGLKR-DGLYDKLVERFKSEEEFYNDRSFGL 262 Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQ 290 E + + ++G P+ Sbjct: 263 LYMLEDKEQVKNKKNWTMALPLIGDVPK 290 >gi|46133873|ref|XP_389252.1| hypothetical protein FG09076.1 [Gibberella zeae PH-1] Length = 1721 Score = 41.9 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 17/136 (12%), Positives = 33/136 (24%), Gaps = 18/136 (13%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT M+ L ++ A + + N + + + P + L Sbjct: 1305 GTGKTETIVEMICALQIANEKARVLVTAPTHNAVDNVMRRYIKQIQEQ-PLARKVQPNVL 1363 Query: 147 SLHPSGWYAELLEQ----------SMGIDSKHYTITCRTYSEERP-------DTFVGPHN 189 + + + D K + + + Sbjct: 1364 RVSTEVHKVSDDLRKYTCDAMAGQEIHGDYKAMKKATQMIKDSDTVFTTCIGAGIGLLRS 1423 Query: 190 THGMAVFNDEASGTPD 205 V DEAS + Sbjct: 1424 EFFDIVIVDEASQQTE 1439 >gi|293401139|ref|ZP_06645283.1| SNF2 domain protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305265|gb|EFE46510.1| SNF2 domain protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 447 Score = 41.9 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 34/240 (14%), Positives = 70/240 (29%), Gaps = 34/240 (14%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN-AWMMLWLISTRPGMS 109 PH +Q ++ ++ H + V G+GKT + + L + Sbjct: 5 PHNYQSYAIDYIETHPVAAVLLDM------------GLGKTVIFLTAIADLLFDSFEAHR 52 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I+ +A ++T AE+SKW + + + ++ + A + ++ + Sbjct: 53 ILVVAP-LRVARDTWPAEISKWQHLKHLTYAVAVGTVKERKAALSAGADITIINRENLGW 111 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 I Y V DE S + +K + I + Sbjct: 112 LIDSSGYE------------FDYDMVIIDELSSFKNHKSKRFQSLMKVRPKVKRIIGLTG 159 Query: 230 TRRLNGWFYDIFNIPLEDW--------KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR 281 T NG L D+ Y+ + + + + + R Sbjct: 160 TPSSNGLMDLWAEFKLLDFGERLGRFITHYRNNYFIPDKRNGEIIYSYKPMPYAEDAIYR 219 >gi|194216574|ref|XP_001490317.2| PREDICTED: similar to Eukaryotic initiation factor 4A-III (Eukaryotic translation initiation factor 4A isoform 3) (ATP-dependent RNA helicase eIF4A-3) (ATP-dependent RNA helicase DDX48) (DEAD box protein 48) (Eukaryotic initiation factor 4A-like NUK-34) (Nucl [Equus caballus] Length = 375 Score = 41.9 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 27/274 (9%), Positives = 65/274 (23%), Gaps = 34/274 (12%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR--------GIGKTTLNAWMMLWLI-STR 105 + + + + + + K I GR G GKT + +L + Sbjct: 46 REDLLRGIYAYGFEKPSAIQQRAIKQIIK-GRDVIAQSQSGTGKTATFSISVLQCLDIQV 104 Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 + +A + E++ + + ++ H + E +D Sbjct: 105 RETQALILAPT---------RELAVQIQK-GLLALGDYMNVQCHACIGGTNVGEDIRKLD 154 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS-----GTPDIINKSILGFFTELNP 220 + + + DEA G + I Sbjct: 155 YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL--PPAT 212 Query: 221 NRFWIMTSNTRRLNGWFYDIFNIP----LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLD 276 I + + P ++ + V+ + E + + Sbjct: 213 QVVLISATLPHEILEMTNKFMTDPIRILVKRFYYIHPLFDPVDWLTEKMREANFTVSSMH 272 Query: 277 SDVARIEILG---QFPQQEVNNFIPHNYIEEAMS 307 D+ + E +F I + + Sbjct: 273 GDMPQKERESIMKEFRSGASRVLISTDVWARGLD 306 >gi|164687290|ref|ZP_02211318.1| hypothetical protein CLOBAR_00931 [Clostridium bartlettii DSM 16795] gi|164603714|gb|EDQ97179.1| hypothetical protein CLOBAR_00931 [Clostridium bartlettii DSM 16795] Length = 480 Score = 41.9 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 20/199 (10%), Positives = 49/199 (24%), Gaps = 12/199 (6%) Query: 60 EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-SIICIANSET 118 + S V + + G GK+ A + I ++ I + Sbjct: 22 YKIPSQVQSRVIPVLLDKKDILVKSKTGTGKSAAFAIPICNKIKKLENKLKVLVIVPTRE 81 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 E+ K + + + L + + I Sbjct: 82 LALQV-KEEIEKIGRLKMIKCSVILGKEPLKNQI---------LELKQGTNVIVATPGRM 131 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 + DE ++ + + PN + ++ Sbjct: 132 IDHISRGSVDLDDLDYFIIDEVDKMFTKGFETDINTIMKNIPNTSCKAFFSAT-VDNDLK 190 Query: 239 DIFNIPLEDWKRYQIDTRT 257 +I N ++D++ ++D Sbjct: 191 EICNGYMKDYEYIEVDEEE 209 >gi|120600080|ref|YP_964654.1| ATP-dependent RNA helicase SrmB [Shewanella sp. W3-18-1] gi|146291991|ref|YP_001182415.1| ATP-dependent RNA helicase SrmB [Shewanella putrefaciens CN-32] gi|120560173|gb|ABM26100.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1] gi|145563681|gb|ABP74616.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens CN-32] Length = 419 Score = 41.9 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 48/233 (20%), Gaps = 22/233 (9%) Query: 57 EFMEAVDVH----CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM---- 108 E ++A+ H A G GKT L + P Sbjct: 14 ESLKAMGHHSPTTIQQETIPYALEQRDILARAPTGTGKTASFLLPALQHLIDFPRRFSGQ 73 Query: 109 -SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 I+ + + E++ + H Q L + Q + Sbjct: 74 ARILILTPT---------RELASQIHRYAC-HLATDQGLDIAIITGGVPYAPQEEALAGN 123 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227 + + DEA D+ S++ R M Sbjct: 124 VDILVATPGRLMEYLDKGKFSAEEVDILIIDEADRMLDMGFSSVVQAIALEAQGRKQNML 183 Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280 + G L+D + + I Sbjct: 184 FSATLEGGGVQRFAREVLKDPIEIDV---DAPRSEKAKIHQWIHLADDKEHKF 233 >gi|71004464|ref|XP_756898.1| hypothetical protein UM00751.1 [Ustilago maydis 521] gi|74704380|sp|Q4PGL2|INO80_USTMA RecName: Full=Putative DNA helicase INO80 gi|46095890|gb|EAK81123.1| hypothetical protein UM00751.1 [Ustilago maydis 521] Length = 1910 Score = 41.9 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 26/230 (11%), Positives = 54/230 (23%), Gaps = 31/230 (13%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GMS 109 +QL+ + + +N G+GKT + +M +L Sbjct: 1000 EYQLKGLNWLANLYEQGINGILADEM--------GLGKTVQSISLMAYLAEVHDIWGPFL 1051 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 +I A++ E+SK++ L ++ + + + + Sbjct: 1052 VIAPASTLHN----WQQEISKFVPTLKALPYWGNVKDRAVLRKF---WNRKQISYNRDAP 1104 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 T + + DEA N ++T Sbjct: 1105 FHVLVTSYQLVVSDEKYFQRVKWQYMILDEAQAIKSSS-SIRWKTLLGFNCRNRLLLTGT 1163 Query: 230 TRRLNGWFYDIFNIPLEDW---KRYQIDTRTVEGIDSGFHEGIISRYGLD 276 + N E W S + I + Sbjct: 1164 P---------VQNSMQELWALLHFIMPSLFDSHDEFSEWFSKDIESHAEQ 1204 >gi|332671921|ref|YP_004454929.1| type III restriction protein res subunit [Cellulomonas fimi ATCC 484] gi|332340959|gb|AEE47542.1| type III restriction protein res subunit [Cellulomonas fimi ATCC 484] Length = 1029 Score = 41.9 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 45/307 (14%), Positives = 88/307 (28%), Gaps = 45/307 (14%) Query: 4 LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63 + D EQ E + + PLE +PH +Q +E ++ Sbjct: 277 FVPYDP--EQFAAEQRRAGNSDHGPRVML----------SPLE--VRPHPFQSRLLELLE 322 Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 V + + + A G GKT + A L ++ +A+ E L + Sbjct: 323 VSRQRGHHRNL-------LVAATGTGKTVMAALDYARLRRRLGSARLLFVAHREEILDQS 375 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 L F L + + + + QS D H + ++ + + Sbjct: 376 L--------------ATFRHT---LRETQFGEKWVGQSRPRDFDHVFASVQSLNANGLGS 418 Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI 243 H V DE + I T + P +T+ R +G + Sbjct: 419 LDPEHFD---VVIIDEFHHAAAASYERI---LTAVKPKELLGLTATPERTDGLPILQWFD 472 Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303 + D + + + F + +V G + N + + Sbjct: 473 HRIAAELRLWDAIDQQHL-APFVYYGVHDGLDLREVPWRRGRGYDVEALSNLYTSSDAWA 531 Query: 304 EAMSREA 310 + +E Sbjct: 532 RRVIKEV 538 >gi|83591582|ref|YP_425334.1| Type III restriction enzyme, res subunit [Rhodospirillum rubrum ATCC 11170] gi|83574496|gb|ABC21047.1| Type III restriction enzyme, res subunit [Rhodospirillum rubrum ATCC 11170] Length = 1014 Score = 41.9 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 23/77 (29%), Gaps = 12/77 (15%) Query: 38 WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97 W + P W H +NP + + A+ G GKTT+ A + Sbjct: 141 WLTEVAPKLGKKGERFW---------DHIKGANEQANPELLRLALKLATGAGKTTVMAML 191 Query: 98 MLW---LISTRPGMSII 111 + W P Sbjct: 192 IAWQTVNAVRHPNSKTF 208 >gi|199581427|gb|ACH89415.1| FclIR [Flavobacterium columnare] Length = 974 Score = 41.9 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 65/241 (26%), Gaps = 23/241 (9%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P Q ++ +G GK+ L + W++ + Sbjct: 206 PRPHQYFALKEAQKFIQQKEGGIIWHT--------QGSGKSILMIILAKWILENVTNSRV 257 Query: 111 ICI---ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 + + + Q+ +T K ++ + P + + + ++ Sbjct: 258 VILTDRTELDKQIADTFEGIGEKDIARTRSGNELMYFLTQPKPRLIASLIHKFGNKGETD 317 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227 + +T+ EE + + VF DE + + N +I Sbjct: 318 Y-----KTFIEEIKSNPIPIQGN--VFVFVDECH---RTQGGKLNETMKAVLQNAIFIGF 367 Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287 + T L +I Y+ + +G+ S + ++ Sbjct: 368 TGTPLLQKDKQTTMDIFGRYIHTYKFNEAVTDGVVKDLVYEGRDIEQKLSS--QDKVDAW 425 Query: 288 F 288 F Sbjct: 426 F 426 >gi|85059174|ref|YP_454876.1| hypothetical protein SG1196 [Sodalis glossinidius str. 'morsitans'] gi|84779694|dbj|BAE74471.1| hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 536 Score = 41.9 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 21/212 (9%), Positives = 46/212 (21%), Gaps = 24/212 (11%) Query: 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAI-SAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 W V CH A+ RG GK+T+ A W I+ Sbjct: 11 WAERMGWDVPD-CHYRACYWLEHRGNLAVLRCFRGFGKSTILAVYNAWRYYRDRQYRILH 69 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 + S++ + T + + + ++ +++ + +K Sbjct: 70 QSESDSTARKTSRDTQNVLRNHPLTKGMLAKSIGAVEQWSVEGAHDKRNASMFAKGILSN 129 Query: 173 CRTYSE--------ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224 E P P + E + F Sbjct: 130 VTGARANECQNDDVEVPGNIQTPEAREKLRYRLSEQTHI-----------LIPGGRKLF- 177 Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256 + + ++ + Sbjct: 178 --IGTPHTHDSLYDEMEAAGADCLTIKLFSHE 207 >gi|285808643|gb|ADC36161.1| hypothetical protein [uncultured bacterium 162] Length = 273 Score = 41.9 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 23/211 (10%), Positives = 54/211 (25%), Gaps = 37/211 (17%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q+ +++++ H N + I A G GKT ++ R + Sbjct: 24 RTYQVRLLDSLNDHLDDN---------RVHIVAAPGSGKTIFGIEVV-----RRINKRTL 69 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL------------E 159 +A + T + ++L + R + + E Sbjct: 70 VLAPTTTIRDQWAERLIQQFLPIGDSRPDWVSTDIRKPRRLTIVTYQALHALCSGQPDHE 129 Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM----------AVFNDEASGTPDIINK 209 + ++S+ E + + + DEA + Sbjct: 130 PTENLESEENLSFSPAIVIENGNGDGNAKAAEQVELPASLSRFETLLVDEAHHLKAEWWR 189 Query: 210 SILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240 ++ F +T+ F Sbjct: 190 TLT-FVVNRLRPTVIALTATPPYDVSPFEWQ 219 >gi|310722509|ref|YP_003969332.1| Dda DNA helicase [Aeromonas phage phiAS5] gi|306021352|gb|ADM79886.1| Dda DNA helicase [Aeromonas phage phiAS5] Length = 454 Score = 41.9 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 22/154 (14%), Positives = 43/154 (27%), Gaps = 27/154 (17%) Query: 62 VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121 + +++ IS G GK+ L ++ LI G +I A + Q K Sbjct: 13 LTDCQKRSIDAVLNDRSHITISGPAGSGKSFLTKILIKKLIEKNNGG-VILSAPT-HQAK 70 Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 L + ++H + + + + + E Sbjct: 71 IVLSKMSG-------------YTASTIHSIMKIHPDTYEDVREFKQSKSDKAKKDLNEVR 117 Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 + DEAS + + + IL Sbjct: 118 ------------YLIVDEASMVDNDLFEIILKSV 139 >gi|269120813|ref|YP_003308990.1| type III restriction protein res subunit [Sebaldella termitidis ATCC 33386] gi|268614691|gb|ACZ09059.1| type III restriction protein res subunit [Sebaldella termitidis ATCC 33386] Length = 993 Score = 41.9 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 71/225 (31%), Gaps = 40/225 (17%) Query: 16 HEMLMHAECVLSFKNFVMRF-----FPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70 + ++++ + ++NF + F + + E F P++ Q E +E + + Sbjct: 229 EAIELNSKFIDMYENFRNKSGNIETFDFKKEETEKEIFM-PNKMQSELLEKLKLTREFGN 287 Query: 71 NNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK 130 K I A G GKT L A +L + +L N + SK Sbjct: 288 K-------KGLIVAATGTGKTYLAAMDILKM-----NPKSFLFIAHREELINNAFNVFSK 335 Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190 L + + F S + + ++ Sbjct: 336 ILPYDKNEYGFLTGSEKNYNKRFMFSTIQSLYK-------------------NTEYFSKD 376 Query: 191 HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 + DE + ++++ +F NP +T+ R++G Sbjct: 377 AFDYIIIDEFHHSKASTYEAVINYF---NPFFMLGLTATPERMDG 418 >gi|88813625|ref|ZP_01128856.1| Type III restriction enzyme, res subunit [Nitrococcus mobilis Nb-231] gi|88789130|gb|EAR20266.1| Type III restriction enzyme, res subunit [Nitrococcus mobilis Nb-231] Length = 531 Score = 41.9 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 46/181 (25%), Gaps = 15/181 (8%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 +Q E + + + G GKT + + + Sbjct: 130 DYQREIVLRTQHVLEEPPRKALLHM-------PTGSGKTRTAMHFIARHLQKYGPTLVCW 182 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 +ANS L+ E + ML R S+ ++ + S+ Sbjct: 183 LANSGELLEQAA-DEAERSWRMLGDR------SIGIYRFWGDHSVDLGSVRDGVLVAGFA 235 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASG-TPDIINKSILGFFTELNPNRFWIMTSNTR 231 + R + DEA I +T+ N +T+ Sbjct: 236 KMHAAYLREQNTLIALGDRSSLTVVDEAHQAIAPTYRSVIDALYTKRPVNALLGLTATPG 295 Query: 232 R 232 R Sbjct: 296 R 296 >gi|291563087|emb|CBL41903.1| DNA or RNA helicases of superfamily II [butyrate-producing bacterium SS3/4] Length = 691 Score = 41.9 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 56/187 (29%), Gaps = 36/187 (19%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +P Q+E + A++ + + A GIGKT L A ++ Sbjct: 197 EPRGAQIEALCALENSRAEGAV-------RGIVQAATGIGKTYLAA------FDSKKYQK 243 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ +A+ E L + + ++ S Y E+ Sbjct: 244 VLFVAHREEIL------------------NQAAVSFHNVRNSDDYGFFNEREKATGKSVI 285 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNRFWIMTS 228 + T + T + + DE D + I F P +T+ Sbjct: 286 FASVYTLGRKEYLTEKYFSEDYFDYIVIDEFHHAVNDGYLRIIDYF----KPKFLLGLTA 341 Query: 229 NTRRLNG 235 R++G Sbjct: 342 TPERMDG 348 >gi|261881047|ref|ZP_06007474.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270332164|gb|EFA42950.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 375 Score = 41.9 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 24/177 (13%), Positives = 52/177 (29%), Gaps = 11/177 (6%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 + P + + + V + N S A+ + R IGK+ L + Sbjct: 11 YGYKGP-EYFCDREQEVAQLISALHNES-----NVALISPRRIGKSGLIHHAFHLIREQS 64 Query: 106 PGMSIICIA--NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163 P ++ I I N+ +Q K+ + A S+ ++ L ++ + G+ + Sbjct: 65 PDIACIYIDILNTRSQ-KDFIDAFASEVIAALGGNLQTALKKAASFFKGFRPTITFDEFS 123 Query: 164 IDSKHYTITCRTYSEERPDT-FVGPHNTHGMAVF-NDEASGTPDIINKSILGFFTEL 218 + + F H + DE + + Sbjct: 124 GAPTFSFHVEHSKESNTIEQIFKYIHQSGKRCYIAFDEFQQITNYPEPGLEALLRSQ 180 >gi|261381104|ref|ZP_05985677.1| CRISPR-associated helicase Cas3 domain protein [Neisseria subflava NJ9703] gi|284795902|gb|EFC51249.1| CRISPR-associated helicase Cas3 domain protein [Neisseria subflava NJ9703] Length = 762 Score = 41.9 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 47/175 (26%), Gaps = 14/175 (8%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 G GKT + L +I + + ++ AE K L + E Sbjct: 268 PTGGGKTFTSMAFALEYAKRHGMRRVIYVIPFTSIIEQNA-AEFRKAFGELGEQAVLEHH 326 Query: 145 SLSLHPS-GWYAELLEQSMGIDSKHYTITCRTYS-------EERPDTFVGPHNTHGMAVF 196 S A + + ++ I T +R HN G + Sbjct: 327 STFDDGKLQNEATKDKLRLASENWDAPIVVTTAVQFFESLFADRSSRCRKLHNIAGSVII 386 Query: 197 NDEASGTPDI----INKSILGFFTELNPNRFWIMTSNTR-RLNGWFYDIFNIPLE 246 DEA P I ++I + + + FY F E Sbjct: 387 LDEAQMLPLNLLLPIMQAIKELAQNYRCSVVMCTATQPAVQAENGFYRGFENVRE 441 >gi|195590910|ref|XP_002085187.1| GD12444 [Drosophila simulans] gi|194197196|gb|EDX10772.1| GD12444 [Drosophila simulans] Length = 687 Score = 41.9 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 42/145 (28%), Gaps = 12/145 (8%) Query: 72 NSNPTIFK-CAISAGRGIGKTTLNAWMMLWLISTRPGMS-----IICIANSETQLKNTLW 125 P + +SA G GKT A ++ L+S R ++ +A Q+ + Sbjct: 177 KPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVDCKVRALVVLPVAELALQVYRVIS 236 Query: 126 AEVSKW-LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184 A SK L +++ Y +T E Sbjct: 237 ALCSKTDLEACLLSKQHKLEDEQEKLVEQYKGKY-----YSKADIVVTTPGRLVEHLHAT 291 Query: 185 VGPHNTHGMAVFNDEASGTPDIINK 209 G + DEA D + + Sbjct: 292 KGFCLKSLKFLIIDEADRIMDAVFQ 316 >gi|153839129|ref|ZP_01991796.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ3810] gi|260902834|ref|ZP_05911229.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ4037] gi|149747384|gb|EDM58352.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ3810] gi|308107831|gb|EFO45371.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ4037] Length = 430 Score = 41.9 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 26/272 (9%), Positives = 74/272 (27%), Gaps = 38/272 (13%) Query: 87 GIGKTTLNAWMMLWLIST------RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 G GKT + M+ + R + +A + E+++ ++ + + Sbjct: 48 GTGKTAAFSLPMIQQLLDSGRTASRKTARALILAPT---------RELAEQIADNI-KAY 97 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + LS+ ++ Q +++ + E + + DEA Sbjct: 98 TKYTDLSVVAVFGGRKMSSQISALENGVDILVATPGRLEEHIEQGNVSVANLEFLVFDEA 157 Query: 201 SGTPDIIN--KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 D+ + + ++ T + + + +T Sbjct: 158 DRILDMGFIHAVRKIMLDVDTDPQIMMFSATTSSQLNLLAKDILRKPKRIEVERANTTAH 217 Query: 259 EG------IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY----------- 301 +D ++S + ++ + + + + Sbjct: 218 TVAHVLYPVDQERKTELLSELIGRKNWQQVLVFVNYKETANDVVKELKLDGIKAVVCHGD 277 Query: 302 -IEEAMSREAIDDLYA--PLIMGCDIAGEGGD 330 + A R + +++ D+A G D Sbjct: 278 RAQSARRRALEEFKTGKVRVMVATDVAARGLD 309 >gi|111018693|ref|YP_701665.1| helicase [Rhodococcus jostii RHA1] gi|110818223|gb|ABG93507.1| possible helicase [Rhodococcus jostii RHA1] Length = 549 Score = 41.9 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 38/142 (26%), Gaps = 5/142 (3%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + G G GKT L L G + I S L + L + W R Sbjct: 221 RVEVRGGAGSGKTFLAVEKARRLAKQ--GQRVALICYS-HGLASYLERLTATW--SYEER 275 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + + +L E ++S+ P AV D Sbjct: 276 PAYVGEFHALGQRWGAPEGPDESIRTTDTVQFWEHDLPRHMAELASDLPLRDRFDAVVVD 335 Query: 199 EASGTPDIINKSILGFFTELNP 220 EA D +L + Sbjct: 336 EAQDFADDWWGPLLAALRDEEA 357 >gi|13399860|pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The Hyperthermophile Methanococcus Jannaschii gi|13399861|pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The Hyperthermophile Methanococcus Jannaschii Length = 367 Score = 41.9 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 18/192 (9%), Positives = 44/192 (22%), Gaps = 25/192 (13%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 F +P Q + + + A G GKT A ++ L++ Sbjct: 25 GFEKPTDIQXKVI-----------PLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENN 73 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 G+ I + + + + L ++ + + + + Sbjct: 74 GIEAIILTPTRELAIQV-----ADEIESLKGNKNLKI------AKIYGGKAIYPQIKALK 122 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFF--TELNPNRF 223 + + + DEA K + + Sbjct: 123 NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEXLNXGFIKDVEKILNACNKDKRIL 182 Query: 224 WIMTSNTRRLNG 235 + R + Sbjct: 183 LFSATXPREILN 194 >gi|297824187|ref|XP_002879976.1| hypothetical protein ARALYDRAFT_483318 [Arabidopsis lyrata subsp. lyrata] gi|297325815|gb|EFH56235.1| hypothetical protein ARALYDRAFT_483318 [Arabidopsis lyrata subsp. lyrata] Length = 2168 Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 23/216 (10%), Positives = 52/216 (24%), Gaps = 23/216 (10%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCA----ISAGRGIGKTTLNAWMMLWLISTRPGM--SI 110 E + H + ++ + ++A G GKT + +L P + Sbjct: 1343 ETLYQDFKHFNPVQTQVFSVLYNTSDNVLVAAPTGSGKTICAEFAILRNHLEGPDSTMRV 1402 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + +A E K K+ L R +L + Sbjct: 1403 VYVAPLEAIAKEQFRDWEKKFGKGLGLRVVELTGETALDLKLLEK----------GQIII 1452 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP-------DIINKSILGFFTELNPNRF 223 T + + DE ++I + +++ Sbjct: 1453 STPEKWDALSRRWKQRKYIQQVSLFIVDELHLIGGQGGPVLEVIVSRMRYISSQVGNKIR 1512 Query: 224 WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 + S + + + + + R V Sbjct: 1513 IVALSTSLANAKDLGEWIGASSCGFFNFPPNVRPVP 1548 >gi|294501273|ref|YP_003564973.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus megaterium QM B1551] gi|295706620|ref|YP_003599695.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319] gi|294351210|gb|ADE71539.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus megaterium QM B1551] gi|294804279|gb|ADF41345.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus megaterium DSM 319] Length = 439 Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 55/224 (24%), Gaps = 29/224 (12%) Query: 30 NFVMRFF-PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGI 88 NF F P+ I+ F QP Q + +V + G Sbjct: 5 NFERFEFQPFLIEAIKQLGFYQPTEIQERLIPSVLKGES------------VIGQSQTGT 52 Query: 89 GKTTLNAWMMLWLISTRPGMS----IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 GKT +L L+ ++ A + + +H E + Sbjct: 53 GKTH---AYLLPLLEKVDPKKEEVQVVITAPTRELASQIYQEVLK------LTKHSAEGE 103 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 +S + + + + A+ DEA Sbjct: 104 EISAKCFIGGTDKQRTIDKLKKQPQVVVGTPARLFDLVNEKALVVYTTKALVVDEADLML 163 Query: 205 DIINKSILGFFTELNPNRFWIMTSN---TRRLNGWFYDIFNIPL 245 D+ + P + ++ + +L + P Sbjct: 164 DMGFLEDVDRLASNMPEKLQMLVFSATIPEKLKPFLKKYMENPK 207 >gi|255513283|gb|EET89549.1| DEAD_2 domain protein [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 614 Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 9/80 (11%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L FS P ++Q E M+ + + ++A GIGKT L Sbjct: 6 LFRFSAPRQYQKEMMQDIYGAVSRGQS--------ILVNAPTGIGKTDAAIGATLTYALK 57 Query: 105 RPGMSIICIANSETQLKNTL 124 + + +Q K + Sbjct: 58 N-SKDVFFLTPKISQHKIAM 76 >gi|219683588|ref|YP_002469971.1| DNA or RNA helicase of superfamily II [Bifidobacterium animalis subsp. lactis AD011] gi|219621238|gb|ACL29395.1| DNA or RNA helicase of superfamily II [Bifidobacterium animalis subsp. lactis AD011] Length = 1020 Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 62/187 (33%), Gaps = 32/187 (17%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +P+ Q + + + K + + G GKT L+A + + Sbjct: 232 EPNAMQRDALANIRKLREEGE-------RKAVVISATGTGKTYLSA----FDVRQFQPKR 280 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ +AN +T LK+ E + + + S D+K+ Sbjct: 281 MLYVANRDTILKSA--RESYQRVLGCDEGELGLLTGN--------------SKQHDAKYV 324 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 T T + + + DEA + +S++ +F+E + MT+ Sbjct: 325 FATVDTLRRHMMEWYEP---DDFDYILIDEAHHSGANNYRSVIDYFSEAD--FMLGMTAT 379 Query: 230 TRRLNGW 236 R + + Sbjct: 380 PERTDNF 386 >gi|198422283|ref|XP_002119912.1| PREDICTED: similar to capping protein (actin filament) muscle Z-line, alpha 1 [Ciona intestinalis] Length = 968 Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 36/146 (24%), Gaps = 9/146 (6%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV-----SKWLSMLPHRHWF 141 G GKT + + P + A S + + + M + Sbjct: 517 GTGKTVTMVEAIKQVHKFHPDYKCLVCAPSNSACDLMAERLIGHIDKKRMFRMCAMSRQW 576 Query: 142 EMQSLSLHPSGWYAELLEQS---MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + P Y K YT+ T ++ N H VF D Sbjct: 577 RDVPEKVKPISNYNSSTGDYYYPPLETLKEYTVILTTLITAGRISWAEFPNNHFNYVFID 636 Query: 199 EA-SGTPDIINKSILGFFTELNPNRF 223 EA ++ G + Sbjct: 637 EAGHAVEPECMVAVEGILAKRGRVVL 662 >gi|183602543|ref|ZP_02963908.1| DNA or RNA helicase of superfamily II [Bifidobacterium animalis subsp. lactis HN019] gi|241190617|ref|YP_002968011.1| superfamily II DNA/RNA helicase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196023|ref|YP_002969578.1| superfamily II DNA/RNA helicase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218184|gb|EDT88830.1| DNA or RNA helicase of superfamily II [Bifidobacterium animalis subsp. lactis HN019] gi|240249009|gb|ACS45949.1| superfamily II DNA/RNA helicase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250577|gb|ACS47516.1| superfamily II DNA/RNA helicase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178356|gb|ADC85602.1| DNA/RNA helicase (DEAD/DEAH box family) [Bifidobacterium animalis subsp. lactis BB-12] gi|295793606|gb|ADG33141.1| superfamily II DNA/RNA helicase [Bifidobacterium animalis subsp. lactis V9] Length = 1041 Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 62/187 (33%), Gaps = 32/187 (17%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +P+ Q + + + K + + G GKT L+A + + Sbjct: 253 EPNAMQRDALANIRKLREEGE-------RKAVVISATGTGKTYLSA----FDVRQFQPKR 301 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ +AN +T LK+ E + + + S D+K+ Sbjct: 302 MLYVANRDTILKSA--RESYQRVLGCDEGELGLLTGN--------------SKQHDAKYV 345 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 T T + + + DEA + +S++ +F+E + MT+ Sbjct: 346 FATVDTLRRHMMEWYEP---DDFDYILIDEAHHSGANNYRSVIDYFSEAD--FMLGMTAT 400 Query: 230 TRRLNGW 236 R + + Sbjct: 401 PERTDNF 407 >gi|182420170|ref|ZP_02951401.1| DNA/RNA helicase [Clostridium butyricum 5521] gi|237667593|ref|ZP_04527577.1| type III restriction protein, res subunit [Clostridium butyricum E4 str. BoNT E BL5262] gi|182375972|gb|EDT73562.1| DNA/RNA helicase [Clostridium butyricum 5521] gi|237655941|gb|EEP53497.1| type III restriction protein, res subunit [Clostridium butyricum E4 str. BoNT E BL5262] Length = 833 Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 54/183 (29%), Gaps = 34/183 (18%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +P Q+E + A++ + K I A GIGKT L A ++ Sbjct: 228 EPKGAQIEALYALNNTREEGFD-------KALIVAATGIGKTYLAA------FDSKDSQR 274 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I+ +A+ E +K + ++F D Sbjct: 275 ILFVAHREEIIKQAA-RSFKNVRNSEDIGYFFNSTKDK-----------------DKSMI 316 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 +T ++ + + DE + I+ +FT P +T+ Sbjct: 317 FALVQTLGKDEYLNEDYFKKDYFDYIIIDEFHHAVSNNYRKIIDYFT---PKFLLGLTAT 373 Query: 230 TRR 232 R Sbjct: 374 PER 376 >gi|241205120|ref|YP_002976216.1| type III restriction protein res subunit [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859010|gb|ACS56677.1| type III restriction protein res subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 930 Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 25/213 (11%), Positives = 54/213 (25%), Gaps = 36/213 (16%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q + ++ + + + ++A G GKT L +M R G + + Sbjct: 11 RAYQQKILDDLANLIGDDGLH--------IVAAP-GSGKTVLGLEVM-----CRLGEATL 56 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWY--------AELLEQSMG 163 +A S +++ WA + + + P E S + G Sbjct: 57 ILAPS-KTIRDQ-WAHRLRTMFLPPDLAEPEWISHDVRAPGTVTIITYQALHAAFSGHPS 114 Query: 164 IDSKHYTITCRTYSEERPDTFVG------------PHNTHGMAVFNDEASGTPDIINKSI 211 + + E + + DEA + K++ Sbjct: 115 EEEVLDGEEEGSDGAESGEPGKQETEKARKKIIAKLREEKVRTLVLDEAHHLRNEWWKAL 174 Query: 212 LGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244 L +T+ Sbjct: 175 TMLKEALGQPTVVALTATPPYDVDPQEWDRYQA 207 >gi|306821248|ref|ZP_07454862.1| ATP-dependent RNA helicase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550760|gb|EFM38737.1| ATP-dependent RNA helicase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 517 Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 30/240 (12%), Positives = 66/240 (27%), Gaps = 21/240 (8%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAG-------RGIGKTTLNAWMM 98 F + ++A+D ++ I A++ G GKT + Sbjct: 1 MKFRELTDINENILKAIDAMGFEDMTQIQEKIVPVAVNKCDVIGQSQTGTGKTVAFGIPL 60 Query: 99 LWLISTRPGM-SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 + + + + + AE+++ L LP + E+ Sbjct: 61 IQNLDFDEEKIQSVIMTPTRELAIQVT-AEINRLLRFLPTKAVALY---------GGEEI 110 Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFT 216 Q + + I + V DEA + I Sbjct: 111 TRQIKRLKDRPAIIVATPGRLMDHIRRRTVKTEYINTVVLDEADEMLSMGFVEDIEEILE 170 Query: 217 E-LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275 + N + + ++ + F + + + + T TV+ ID + + S Sbjct: 171 QMPNRSITMLFSATMPDRIKKISEKF-LKDPLFVKVERKTLTVDSIDQKYIQIQESDKFD 229 >gi|242005506|ref|XP_002423606.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212506754|gb|EEB10868.1| conserved hypothetical protein [Pediculus humanus corporis] Length = 1199 Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 22/214 (10%), Positives = 54/214 (25%), Gaps = 27/214 (12%) Query: 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 W + + NV + G GKT+ +++ + + PG ++ Sbjct: 708 WHSKNLNERQKMAVINVLKGQGRPLPYIVFGPPGTGKTSTLIELIIQIYTLIPGSRLLVC 767 Query: 114 ANSETQLKNTLWAEVSK------WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 A + + L L F + + + + + Sbjct: 768 APLNSAADLICERLIEIGKFKPGQLVRLIAFQRFLQDKVPPKLVPYSTLVSLEDDTGKNN 827 Query: 168 HYTITCRTYSEERPDTFVGPHN-------------------THGMAVFNDEASGTPDIIN 208 + +G H H + DEA + Sbjct: 828 ESLKFKKNIRISSASQLIGRHRITVGTCSSVGYLHYLAFPLEHFTHILVDEAGQATEP-- 885 Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242 + ++ + N ++ + ++L + F Sbjct: 886 EILIPASFQSFTNSRVVLFGDPQQLGPVCFGKFA 919 >gi|195661202|ref|YP_002117670.1| large terminase subunit [Lactobacillus phage Lrm1] gi|166200916|gb|ABY84303.1| large terminase subunit [Lactobacillus phage Lrm1] Length = 570 Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 40/322 (12%), Positives = 86/322 (26%), Gaps = 60/322 (18%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFK---CAISAGRGIGKTTLNAWMMLWLISTRPG-- 107 +Q + ++ V+ +P I + IS R GK+ L + ++L+ Sbjct: 74 PFQKFIIGSIY----GWVDKDDPNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPA 129 Query: 108 -MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 + A ++ + ++ V L L + D Sbjct: 130 NKRQLYTAANDRKQAGIVFGMVKDRLRAL--------------MRKDPGIKRMVKITRDE 175 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS--GTPDIINKSILGFFTELNPNRFW 224 T DT DE + T D+I G + F Sbjct: 176 LVNLDDGSTIRSFSRDTG-LVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFI 234 Query: 225 IMTSNTRRLNGWFYDIFNIPL---------EDWKRYQIDTRTVEGIDSG--FHEGI---- 269 I T+ F + E + + + V+ +D + + Sbjct: 235 ISTAGFDMNVPMFQQNYPYAKKVLSGEETAERYFAFIAEQDNVQEVDDPNSWIKSNPLLD 294 Query: 270 -----------------ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 +R + ++ + Q ++++ + ++A E D Sbjct: 295 VDIVHDQITDYLTTKLSQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKDAELSEKPD 354 Query: 313 DLYAPLIMGCDIAGEGGDKTVV 334 +G D+ D + Sbjct: 355 IRGKRAWIGIDVGRT-SDLFAI 375 >gi|325291138|ref|YP_004267319.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324966539|gb|ADY57318.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 518 Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 34/307 (11%), Positives = 72/307 (23%), Gaps = 33/307 (10%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 + A G GKT A M+ + + Sbjct: 18 ADMGFEEATPIQEKTIPVAMAGRDIIGQAQTGTGKTAAFAIPMIENLERHAEGIGGLVVT 77 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 +L + E++K P ++ Q + ++ I Sbjct: 78 PTRELAVQVAEEINKIGQFKGIHAQ---------PIYGGQDINRQIRALRNRPQIIVGTP 128 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFF--TELNPNRFWIMTSNTRR 232 H DEA + I + + + Sbjct: 129 GRLMDHMRRHTIRLDHVSMAVLDEADEMLSMGFIEDIESILGEIQHKHQTLLFSATMPQS 188 Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ-Q 291 + P ++ + TV + + E + + ++L + Q Sbjct: 189 ILNLSKRFMLEP--EFISIKAKEVTVPNTEQYYVE--------LPERQKFDVLCRLLDIQ 238 Query: 292 EVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEG--GDKTVVVFRRGNIIEHIFDWS 349 + I + + + EG GD T RR +++ H + Sbjct: 239 SPDLAIVFGRTKRRVDELYEALNKRGY------SAEGIHGDLT--QLRRDSVLRHFKEGV 290 Query: 350 AKLIQET 356 ++ T Sbjct: 291 TDILVAT 297 >gi|325107622|ref|YP_004268690.1| Xenobiotic-transporting ATPase [Planctomyces brasiliensis DSM 5305] gi|324967890|gb|ADY58668.1| Xenobiotic-transporting ATPase [Planctomyces brasiliensis DSM 5305] Length = 652 Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 59/218 (27%), Gaps = 15/218 (6%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL-----ISTRPGMSIIC 112 F + + +VN P K I G GK+TL + + + G+ + Sbjct: 433 FAYNENEYVIRDVNLQIPYREKIGIVGPNGGGKSTLTSLLCRFYDPQQGAVKIDGIDVRN 492 Query: 113 IANSETQLK-------NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 ++ + + + L+ E ++ + E Q + E + Sbjct: 493 LSLHDLRGRIGLVTQQTELFNESIRYNITYGTGNVTEEQIEEAARKAYAHEFISSLPEGY 552 Query: 166 SKHYTITCRTYSEERPDTFVGPHN--THGMAVFNDEA-SGTPDIINKSILGFFTELNPNR 222 + S + + + DEA S IL E N Sbjct: 553 DTPVGQNGQKLSGGQRQRIALARAFLKNPEIMILDEATSQIDVASEDLILDAIREHANNC 612 Query: 223 FWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 + ++ + G + + + + Sbjct: 613 TVLFITHRTSVLGIVDSVIEVQKGAVTHRPVTAQESSR 650 >gi|195376095|ref|XP_002046832.1| GJ12271 [Drosophila virilis] gi|194153990|gb|EDW69174.1| GJ12271 [Drosophila virilis] Length = 1180 Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 27/202 (13%), Positives = 53/202 (26%), Gaps = 27/202 (13%) Query: 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 W E + + NV I G GKT +L L+ PG ++ Sbjct: 691 WFNEGLNCIQKRAVYNVLRGETEKMPYVIFGPPGTGKTVTLVETILQLVRHVPGSRLLVG 750 Query: 114 ANSETQLKNTLWAEV------SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 S + + L ++ E + + + A + ++ D Sbjct: 751 TPSNSSADLITKRIIASNALNHGEFIRLVSQNQVEKDLVPPELASYCATVDIGTVDSDHD 810 Query: 168 HYTITCRTYSEERPDTFVGPHN-------------------THGMAVFNDEASGTPDIIN 208 IT ++G H H V DEA + Sbjct: 811 SMIITESGLKLRCQAKYLGKHLITISTCTTLGNFIQMDFLPEHFTHVLIDEAGQCTEP-- 868 Query: 209 KSILGFFTELNPNRFWIMTSNT 230 ++++ ++ + Sbjct: 869 ETMVPIVLLARKRSQVVLAGDP 890 >gi|160946079|ref|ZP_02093295.1| hypothetical protein PEPMIC_00030 [Parvimonas micra ATCC 33270] gi|158447842|gb|EDP24837.1| hypothetical protein PEPMIC_00030 [Parvimonas micra ATCC 33270] Length = 360 Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 62/235 (26%), Gaps = 28/235 (11%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ + ++ H + + GR GKTTL + + +++ G Sbjct: 117 QPWQHFIIGSLFGWVHKDTGIRRFREGLVFV--GRKNGKTTLISGLSNYMLGFDGENGAR 174 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I +AN+E Q L+ E + P S + + I+++ Sbjct: 175 IYVLANAEQQAHE-LFDEAKAMVEKSP------YLSKRYKAQRSVIKYDKTYSKIEAR-- 225 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTS 228 + DE D + I +T+ Sbjct: 226 -----------ASDSKRLDGLNTHLGIFDEIHEFKDFKLINVIKKSRGARKQPLIIYITT 274 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283 L+G + + E + + + + D I+ Sbjct: 275 AGYVLDGPLMNYYESAQECLENLDDNLDE---RTFYYIAKLDDPKEADHPELWIK 326 >gi|154287262|ref|XP_001544426.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] gi|150408067|gb|EDN03608.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] Length = 1332 Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 36/121 (29%), Gaps = 9/121 (7%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTT A ++ G S++ + + T + N L + L ++ Sbjct: 825 GTGKTTTIAHLI--RALASQGKSVLLTSYTHTAVDNILLKIKDDNIRTLRLGATTKIHPD 882 Query: 147 SLH---PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + E +E+ + + P ++ DEAS Sbjct: 883 IRKFADLAATPKETIEELKDMYENSRIVATTCLGINHP----IFNSRMFDFCIVDEASQI 938 Query: 204 P 204 Sbjct: 939 T 939 >gi|296328513|ref|ZP_06871032.1| DNA/RNA helicase (DEAD/DEAH box family) [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154322|gb|EFG95121.1| DNA/RNA helicase (DEAD/DEAH box family) [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 942 Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 28/194 (14%), Positives = 66/194 (34%), Gaps = 35/194 (18%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P+ Q++ ++ ++ N + + + G GKT L+A + + I Sbjct: 210 PNSMQVQALKNLEETRKEND--------RALLISATGTGKTYLSA----FDVKQTKAKKI 257 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + +A+ K L + + +L ++ E+ + + I++K Sbjct: 258 LFVAHR----KVILERSKNSYQRILKNKKM---------------EIFDSNFQINNKDEV 298 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 + + + + + DE +SI +F P +T+ Sbjct: 299 VFAMVQTLNKEKNLNIFPKDYFDYIIIDEVHHGGAKTYQSIFEYF---KPKFLLGITATP 355 Query: 231 RRLNGW-FYDIFNI 243 R + + Y +FN Sbjct: 356 ERTDDFNIYQLFNY 369 >gi|288555762|ref|YP_003427697.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4] gi|288546922|gb|ADC50805.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4] Length = 454 Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 60/224 (26%), Gaps = 24/224 (10%) Query: 27 SFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR 86 +FK F ++ F I+ + FS P Q + A+ + Sbjct: 5 NFKRFELKPFL--IEALSGQRFSLPTEIQERLIPAIKNGKD------------VIGQSQT 50 Query: 87 GIGKTTLNAWMMLWLIS-TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 G GKT +L I + + I A + L+ E+ K L P Sbjct: 51 GTGKTLSFLLPILDKIDPAKEEVQAIITAPTRELASQ-LFDELKKLLEHCPEEEMIHA-- 107 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 + G+ ++ + + + DEA D Sbjct: 108 ---KLLVGGTDRNRAIEGLKTQPHIVVGTAGRIGDLMDDKALLVYTAAMLVVDEADQMLD 164 Query: 206 IINKSILGFFTELNPNRFWIMTSN---TRRLNGWFYDIFNIPLE 246 + + + +M + +L + N P Sbjct: 165 MGFIADVDKVASRMAEDLQMMIFSATIPEKLQPFLKKYMNDPRH 208 >gi|301092109|ref|XP_002896227.1| N-acetyltransferase 10 [Phytophthora infestans T30-4] gi|262094857|gb|EEY52909.1| N-acetyltransferase 10 [Phytophthora infestans T30-4] Length = 1102 Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 10/125 (8%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 A++AGRG GK+ M L +I A S LK + V K L ++ Sbjct: 280 VALTAGRGRGKSAAL-GMSLAGAVAYGYSNIFVTAPSPENLKTV-FEFVFKGFDALKYKE 337 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + + ++ ++ + + + E+ V DE Sbjct: 338 HLDYEIVQSTNPEFNHAVVRVNIFREHRQTIQYIQPTHHEK--------LAQAELVAIDE 389 Query: 200 ASGTP 204 A+ P Sbjct: 390 AAAIP 394 >gi|261340099|ref|ZP_05967957.1| terminase, ATPase subunit [Enterobacter cancerogenus ATCC 35316] gi|288318026|gb|EFC56964.1| terminase, ATPase subunit [Enterobacter cancerogenus ATCC 35316] Length = 589 Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 39/343 (11%), Positives = 86/343 (25%), Gaps = 76/343 (22%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 F + + + + + R IG T A L G + I ++ S+ Sbjct: 141 FFDQSFDYQLRWHKAGLEHRIRHILKS-RQIGATFYFARESLLRALKT-GQNQIFLSASK 198 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177 TQ K++ ++ + AEL+ + Sbjct: 199 TQAY-----VFRKYIIAFARLVDVDLSGDPIVIGNNGAELI-----------------FL 236 Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNT----- 230 +T + ++ DE P + K G ++ + + T +T Sbjct: 237 GTNSNTAQSHNGD----LYVDEIFWIPNFQKLRKVASGMASQSHLRTTYFSTPSTLAHGA 292 Query: 231 -RRLNGWFYDIFNIPLEDWKRYQIDTR---------TVEGIDSGFHEGIIS--------- 271 +G ++ ++ I + + E ++ Sbjct: 293 YPFWSGELFNRGRSNRDERVDIDISHQALAGGMLCGDGQWRQIVSIEDALAGGCTLFNLD 352 Query: 272 --RYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM------SREAIDDLYAP-----L 318 + +D R + +F + + P ++ M + P + Sbjct: 353 QLKQENSADDFRNLFMCEFVD-DKASVFPFEELQRCMVDAMEEWEDFEPFADRPFNWRPV 411 Query: 319 IMGCDIAGEGGDKTVVVFRRGN-------IIEHIFDWSAKLIQ 354 +G D + G D I W Sbjct: 412 WIGYDPSHTG-DSAGCAVLAPPLVAGGKFRILERHQWKGMDFA 453 >gi|157871882|ref|XP_001684490.1| mitochondrial DEAD box protein [Leishmania major strain Friedlin] gi|68127559|emb|CAJ05642.1| putative mitochondrial DEAD box protein [Leishmania major strain Friedlin] Length = 544 Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 46/177 (25%), Gaps = 20/177 (11%) Query: 43 KPLEHFSQPH---RWQLEFMEAV----DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95 PL F + RW E ++ + A G GKT A Sbjct: 89 TPLNSFEELRDAPRWLAEGLKTLKYPSTTDIQKFTIPLLANGHDVIGLAPTGSGKTVAFA 148 Query: 96 WMMLWLISTRPGMS--IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153 L + P + ++ +A + ++ T K L ++ P Sbjct: 149 VPALAGLKPNPDGTPSVLVLAPTRELVQQTT-----KVFQNLGCGQVRVCEAYGGAPRDL 203 Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS 210 A L + + + + + DEA D+ + Sbjct: 204 QARHLR------NGCDALVACPGRLKDFLDGGDVSIRNLSFLVFDEADRLLDMGFQV 254 >gi|38073423|gb|AAR10833.1| Hel61 [Leishmania major] Length = 544 Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 46/177 (25%), Gaps = 20/177 (11%) Query: 43 KPLEHFSQPH---RWQLEFMEAV----DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95 PL F + RW E ++ + A G GKT A Sbjct: 89 TPLNSFEELRDAPRWLAEGLKTLKYPSTTDIQKFTIPLLANGHDVIGLAPTGSGKTVAFA 148 Query: 96 WMMLWLISTRPGMS--IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153 L + P + ++ +A + ++ T K L ++ P Sbjct: 149 VPALAGLKPNPDGTPSVLVLAPTRELVQQTT-----KVFQNLGCGQVRVCEAYGGAPRDL 203 Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS 210 A L + + + + + DEA D+ + Sbjct: 204 QARHLR------NGCDALVACPGRLKDFLDGGDVSIRNLSFLVFDEADRLLDMGFQV 254 >gi|145220105|ref|YP_001130814.1| CRISPR-associated helicase Cas3 family protein protein [Prosthecochloris vibrioformis DSM 265] gi|145206269|gb|ABP37312.1| CRISPR-associated helicase, Cas3 family [Chlorobium phaeovibrioides DSM 265] Length = 665 Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 20/150 (13%), Positives = 42/150 (28%), Gaps = 7/150 (4%) Query: 68 SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT--LW 125 N + P +F + G GKT + L +I + ++ T ++ Sbjct: 165 KNKASLAPGVFSLTV--PTGGGKTLSSMAFALEHAIKYKKKRVIIAIPYTSIIEQTAAIF 222 Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185 ++ ++L H + + + + + + Sbjct: 223 RKIFGSDAVLEHHSNLDPDRETQSARLSSENWDAPIIVTTNVQLFESLFAAR---SSSCR 279 Query: 186 GPHNTHGMAVFNDEASGTPDIINKSILGFF 215 HN + DEA P + IL Sbjct: 280 KLHNLVNSVIILDEAQTLPTGFLQPILSSL 309 >gi|227875061|ref|ZP_03993206.1| helicase [Mobiluncus mulieris ATCC 35243] gi|304390304|ref|ZP_07372257.1| SNF2 domain protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|306817348|ref|ZP_07451093.1| SNF2 domain protein [Mobiluncus mulieris ATCC 35239] gi|227844339|gb|EEJ54503.1| helicase [Mobiluncus mulieris ATCC 35243] gi|304326060|gb|EFL93305.1| SNF2 domain protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304649789|gb|EFM47069.1| SNF2 domain protein [Mobiluncus mulieris ATCC 35239] Length = 457 Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 61/193 (31%), Gaps = 28/193 (14%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM- 108 QPH +Q + + + H + AI G G+GK+ + +W + Sbjct: 4 QPHNYQRQATQFIIDHHEA------------AIFLGMGLGKSVIT-LTAIWQLMLDYFTI 50 Query: 109 -SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 ++ IA ++T AE++KW + + + + A + + ++ Sbjct: 51 HRVLVIAP-LRVARDTWPAEIAKWDHLDGLTVAVAVGTKQDRLNALAASAMVTIINRENI 109 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227 + I+ + V DE S + K + W+ Sbjct: 110 PWLIS------------QLGGSWPFDMVVIDELSSFKNHRAKRFTALVKMRPHVKRWVGL 157 Query: 228 SNTRRLNGWFYDI 240 + T NG Sbjct: 158 TGTPTSNGLMDVW 170 >gi|160933317|ref|ZP_02080705.1| hypothetical protein CLOLEP_02162 [Clostridium leptum DSM 753] gi|156867194|gb|EDO60566.1| hypothetical protein CLOLEP_02162 [Clostridium leptum DSM 753] Length = 321 Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 56/205 (27%), Gaps = 27/205 (13%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT L M + R II + + L Q + Sbjct: 136 GTGKTYLAVAMAVTAFRAREVNRIILTRPA------------VEAGEKLGFLPGDLQQKV 183 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + Y L M + R E P ++ + DEA T Sbjct: 184 DPYLRPLYDALF--DMLGTDTYQKYVERGNIEVAPLAYMRGRTLDDSFIILDEAQNTTPE 241 Query: 207 INKSILGFFTELNPNRFWIMTSN------TRRLNGWFYDIFNIPL--EDWKRYQIDTRTV 258 K T L N ++T + D+ I +D + + + R V Sbjct: 242 QMKMF---LTRLGFNSKMVITGDITQIDLPDGKRSGLRDVLKILKNVDDIAQIRFNERDV 298 Query: 259 EGIDSGFHEGIISRYGLDSDVARIE 283 + + II Y + + R Sbjct: 299 --VRHKLVQEIIKAYEKNEEGKRNR 321 >gi|261420309|ref|YP_003253991.1| type III restriction protein res subunit [Geobacillus sp. Y412MC61] gi|319767119|ref|YP_004132620.1| type III restriction protein res subunit [Geobacillus sp. Y412MC52] gi|261376766|gb|ACX79509.1| type III restriction protein res subunit [Geobacillus sp. Y412MC61] gi|317111985|gb|ADU94477.1| type III restriction protein res subunit [Geobacillus sp. Y412MC52] Length = 815 Score = 41.5 bits (95), Expect = 0.20, Method: Composition-based stats. Identities = 25/186 (13%), Positives = 49/186 (26%), Gaps = 36/186 (19%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 QP Q+E +E ++ + K + G+GKT L A R Sbjct: 223 QPRFAQVEALERLEAAYEEGYD-------KAMVVMATGLGKTYLAA------FFARRFSR 269 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ IA+ E L+ + + P ++ Sbjct: 270 VLFIAHREEILRQ------------------AKQSFERVIPDRTAGLYDGNQKEGNADMV 311 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 + T S ++ + DE + + P +T+ Sbjct: 312 FASIFTLSMKKH--LHSFRPDAFDLIIVDEFHHAAARSYERV---LRYFQPKFLLGITAT 366 Query: 230 TRRLNG 235 R + Sbjct: 367 PDRSDN 372 >gi|199598961|ref|ZP_03212370.1| hypothetical protein LRH_06891 [Lactobacillus rhamnosus HN001] gi|199590161|gb|EDY98258.1| hypothetical protein LRH_06891 [Lactobacillus rhamnosus HN001] Length = 570 Score = 41.5 bits (95), Expect = 0.20, Method: Composition-based stats. Identities = 40/322 (12%), Positives = 86/322 (26%), Gaps = 60/322 (18%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFK---CAISAGRGIGKTTLNAWMMLWLISTRPG-- 107 +Q + ++ V+ +P I + IS R GK+ L + ++L+ Sbjct: 74 PFQKFIIGSIY----GWVDKDDPNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPA 129 Query: 108 -MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 + A ++ + ++ V L L + D Sbjct: 130 NKRQLYTAANDRKQAGIVFGMVKDRLRAL--------------MRKDPGIKRMVKITRDE 175 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS--GTPDIINKSILGFFTELNPNRFW 224 T DT DE + T D+I G + F Sbjct: 176 LVNLDDGSTIRSFSRDTG-LVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFI 234 Query: 225 IMTSNTRRLNGWFYDIFNIPL---------EDWKRYQIDTRTVEGIDSG--FHEGI---- 269 I T+ F + E + + + V+ +D + + Sbjct: 235 ISTAGFDMNVPMFQQNYPYAKKVLSGEETAERYFAFIAEQDNVQEVDDPNSWIKSNPLLD 294 Query: 270 -----------------ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAID 312 +R + ++ + Q ++++ + ++A E D Sbjct: 295 VDIVHDQITDYLTTKLSQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKDAELSEKPD 354 Query: 313 DLYAPLIMGCDIAGEGGDKTVV 334 +G D+ D + Sbjct: 355 IRGKRAWIGIDVGRT-SDLFAI 375 >gi|146417440|ref|XP_001484689.1| hypothetical protein PGUG_02418 [Meyerozyma guilliermondii ATCC 6260] Length = 847 Score = 41.5 bits (95), Expect = 0.20, Method: Composition-based stats. Identities = 35/264 (13%), Positives = 67/264 (25%), Gaps = 27/264 (10%) Query: 26 LSFKNFVMRFFPW-GIKGKP-LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS 83 K + FP+ G P ++ QP ++ + + + ++ Sbjct: 203 HHPK--LKDVFPYLGSLETPPVKRAPQPEGMNIKLLPFQLEGLNWLLQQEEGEFRGGILA 260 Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 G+GKT + L +S P + + Q KN + L + H Sbjct: 261 DEMGMGKTIQTIALFLSDLSKGPNLVVGPTVA-LMQWKNEIEKHTKDGLLKVLLFHGANR 319 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + S + L S+ H+ V DEA Sbjct: 320 ATDVKELSKYNVILTSFSVLESVFRKQNYGFKRKAGLVKEKSPLHSIEFYRVVLDEAHNI 379 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRL-----------------NGWFYDIFNIPLE 246 D + + R W +T + + +F + Sbjct: 380 KDRTSGTAKAANNLKCSKR-WCLTGTPLQNRIGEMYSLIRFMKLEPFHQYFCTKCECSSD 438 Query: 247 DWKRYQIDTRT----VEGIDSGFH 266 +WK + + F Sbjct: 439 EWKFLDWRHCDICGHSPMVHTNFF 462 >gi|153835022|ref|ZP_01987689.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01] gi|148868543|gb|EDL67640.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01] Length = 430 Score = 41.5 bits (95), Expect = 0.20, Method: Composition-based stats. Identities = 27/272 (9%), Positives = 74/272 (27%), Gaps = 38/272 (13%) Query: 87 GIGKTTLNAWMMLWLIST------RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 G GKT + M+ + R + +A + E+++ ++ + + Sbjct: 48 GTGKTAAFSLPMIQQLLESGRSASRKTARALIMAPT---------RELAEQIADNI-KAY 97 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + LS+ ++ Q ++ + E + + DEA Sbjct: 98 TKYTDLSVAAIFGGRKMSSQVTALEGGVDILVATPGRLEEHIEQGNVSVANIEFLVFDEA 157 Query: 201 SGTPDIIN--KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 D+ + + ++ T + + + +T Sbjct: 158 DRILDMGFIHAVRKIMMDVDTDPQIMMFSATTSSQLNLLAKDILRKPKRIEVERANTTAQ 217 Query: 259 EG------IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY----------- 301 +D ++S + ++ + + + + Sbjct: 218 TIAHVLYPVDQERKTELLSELIGRKNWKQVLVFVNYKETANDVVKELKLDGIKAVVCHGD 277 Query: 302 -IEEAMSREAID--DLYAPLIMGCDIAGEGGD 330 + A R + A +++ D+A G D Sbjct: 278 RAQSARRRALEEFKTGKARVMVATDVAARGLD 309 >gi|29829470|ref|NP_824104.1| DNA repair helicase [Streptomyces avermitilis MA-4680] gi|29606578|dbj|BAC70639.1| putative DNA repair helicase [Streptomyces avermitilis MA-4680] Length = 714 Score = 41.5 bits (95), Expect = 0.20, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 59/194 (30%), Gaps = 16/194 (8%) Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK--TTLNAWMMLWLISTR--PGMSIICIA 114 + V + V + + G GK T L+A + + + + + IA Sbjct: 260 LLEVRDYQKRAVTQWFAQRGRGILRMATGTGKTLTALSAAAQVTKMLHKVGEPLLTVVIA 319 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 + + WA+ +W + P R +S + L ++ IT Sbjct: 320 PYQHLVDQ--WAKDIEWFGVHPLR---AYESTAAWFPHASQLLDALALHTTRGGVIITTN 374 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 E + + + DEA +S L + +++ R Sbjct: 375 KTFGETAFQSILQRYRGQLLLIADEAHNLGARHIRSKLP----DSAQFRLGLSATPER-- 428 Query: 235 GWFYDIFNIPLEDW 248 WF D L D+ Sbjct: 429 -WFDDEGTAALTDY 441 >gi|325182937|emb|CCA17392.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14] gi|325189887|emb|CCA24367.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14] Length = 1653 Score = 41.5 bits (95), Expect = 0.20, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 44/124 (35%), Gaps = 12/124 (9%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 +S G+GKT + + +M P +I +A ++ V++ + Sbjct: 177 NTLVSLPTGLGKTLIASVVMHNFYRWFPNGKVIFLAPTK--------PLVTQQIQACYEI 228 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT-FVGPHNTHGMAVFN 197 + + + G + + + + T ++++ + + F H + + Sbjct: 229 NGLPLDQTAE-IQGNVPKESRRKWWKQKRIFFCTPQSFTNDVKEGIFKDAH--QIVCLII 285 Query: 198 DEAS 201 DEA Sbjct: 286 DEAH 289 >gi|303257923|ref|ZP_07343932.1| putative helicase [Burkholderiales bacterium 1_1_47] gi|302859266|gb|EFL82348.1| putative helicase [Burkholderiales bacterium 1_1_47] Length = 1003 Score = 41.5 bits (95), Expect = 0.20, Method: Composition-based stats. Identities = 25/185 (13%), Positives = 56/185 (30%), Gaps = 20/185 (10%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P++ Q F++ +D HS N + + + G GKT A+ + L+ + Sbjct: 230 PNKMQESFIKKLDEIYHSGQN-------RALLISATGTGKTYAAAFSVKHLMEQKRP--- 279 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + + +K L+ + +++ + + + L D + Sbjct: 280 ---EHHKRPIKKVLFVVHREQIAIQAKNSFARV----IGSEHGQTYGLLSGNHKDKECTF 332 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 + + + DEA + I P + MT+ Sbjct: 333 LFSTIQTLSLDRILKDFAPDAFDFIIIDEAHRSGANSYDKI---MAHFQPEFWLGMTATP 389 Query: 231 RRLNG 235 R + Sbjct: 390 ERTDD 394 >gi|163816458|ref|ZP_02207822.1| hypothetical protein COPEUT_02647 [Coprococcus eutactus ATCC 27759] gi|158448158|gb|EDP25153.1| hypothetical protein COPEUT_02647 [Coprococcus eutactus ATCC 27759] Length = 713 Score = 41.5 bits (95), Expect = 0.20, Method: Composition-based stats. Identities = 24/182 (13%), Positives = 53/182 (29%), Gaps = 9/182 (4%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + HC + N F+ + G GKT + L +I + + + Sbjct: 216 EILKHCLNEGQNEKGY-FRLTV--PTGGGKTIASLAFALKHAVENDMDRVIYVIPYTSII 272 Query: 121 KN--TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 + ++ ++ ++L + + A + + + +S Sbjct: 273 EQNAQVFRDILGEQNVLENHCNVDYDGREDFEPMQLASENWDKPIVVTTNVQFFESLFS- 331 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE---LNPNRFWIMTSNTRRLNG 235 + HN + DEA P K + +E + + T+ L Sbjct: 332 NKSSKCRKLHNIANSVIIFDEAQMLPTDYLKPCIYMISELVIRYRSSIVLCTATQPALGS 391 Query: 236 WF 237 F Sbjct: 392 LF 393 >gi|303389640|ref|XP_003073052.1| pre-mRNA splicing helicase [Encephalitozoon intestinalis ATCC 50506] gi|303302196|gb|ADM11692.1| pre-mRNA splicing helicase [Encephalitozoon intestinalis ATCC 50506] Length = 1480 Score = 41.5 bits (95), Expect = 0.20, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 54/199 (27%), Gaps = 18/199 (9%) Query: 32 VMRFFPWGIKGKPLEHFSQPHRWQLEFMEA-VDVHCHSNVNNS-NPTIFKCAISAGRGIG 89 F G K P + F V + S V +S + A G G Sbjct: 218 AKIVFVPGQKVDVEFDGEPPENVKRLFGRNFVFNYVQSVVQSSVLKGDGNVLVCAPTGSG 277 Query: 90 KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLH 149 KT + +L I R + + IA + + K + + +H + + Sbjct: 278 KTVIGMMCILKEIEARKKVRVGYIAPMKALAREIC-----KTIGKVFSKHEVSVVEHTSD 332 Query: 150 PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209 Y L + + + + ++ R V DE D Sbjct: 333 IYSGYRRLEQAGVIVSTPEKFDILTRNTDLR-----------FDLVIIDEIHIIGDSRGA 381 Query: 210 SILGFFTELNPNRFWIMTS 228 +I + + + Sbjct: 382 TIEAIVARMAMQKKCRIVG 400 >gi|290473109|ref|YP_003465970.1| HsdR protein [Xenorhabdus bovienii SS-2004] gi|289172403|emb|CBJ79170.1| HsdR protein [Xenorhabdus bovienii SS-2004] Length = 1029 Score = 41.5 bits (95), Expect = 0.20, Method: Composition-based stats. Identities = 19/188 (10%), Positives = 49/188 (26%), Gaps = 5/188 (2%) Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICI--ANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 +G GK+ W+ W+ P ++ + ++ V + + Sbjct: 277 QGSGKSLTMVWLAKWIRENVPNSRVLIVTDRTELDAQIEKVFTGVEENIYRTKSGADLIF 336 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 +P + + + +++ T E + + VF DE Sbjct: 337 NLNRPNPWLICSLVHKFGHRSEAEDDAATDEYIKELKKSLPSDFRAKGDLFVFVDECH-- 394 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + + +I + T + + Y+ D +G+ Sbjct: 395 -RTQSGKLHDAMKSILAEAVFIGFTGTPLMKKDKKKSIEVFGSFIHTYKFDEAVSDGVIL 453 Query: 264 GFHEGIIS 271 Sbjct: 454 DLRYEARD 461 >gi|330987023|gb|EGH85126.1| helicase domain-containing protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 1178 Score = 41.5 bits (95), Expect = 0.20, Method: Composition-based stats. Identities = 33/221 (14%), Positives = 60/221 (27%), Gaps = 36/221 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT + ++ L+ I+ ++ + +W L + + Sbjct: 132 GAGKTIMAGLLIRELLMRSDAKRILVVSP---------GSLTEQWQDELLEKFGVRFEVF 182 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG-PHNTHGMAVFNDEASGTPD 205 S A + + R R + + NT + DEA Sbjct: 183 SREKQEQCASGN-----YFEEINLLIARLDQLSRSEDYQQKLKNTEWDLIIVDEAHKLSA 237 Query: 206 IINKSI--------LGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257 S LG F +MT+ N ED++ + Sbjct: 238 NYFGSKVNKTKRFELGELLGSITRHFLLMTATP----------HNGKEEDFQ-IWLSLLD 286 Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIP 298 + F EG SD+ R + + + + P Sbjct: 287 GDRFYGKFREGAHKV--DVSDMMRRMVKEELLKFDGTPLFP 325 >gi|315122536|ref|YP_004063025.1| DNA packaging protein Gp2 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495938|gb|ADR52537.1| DNA packaging protein Gp2 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 455 Score = 41.5 bits (95), Expect = 0.20, Method: Composition-based stats. Identities = 34/316 (10%), Positives = 69/316 (21%), Gaps = 34/316 (10%) Query: 55 QLEFMEAVDVH---CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 Q EF H + + AG +GKT A ++ + Sbjct: 10 QREFRRLDFYHPYEQQKLFHQLGKIARERLFMAGNQLGKTLAGAAEAAIHLTGFYPPWWL 69 Query: 112 ---CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 + + + + L + + + + Sbjct: 70 GHRFVKPIVMVAGSVSYELTRDGIQRLLLGEPMSLDRQGSGMIPAHTIVNMTRRFNVAGA 129 Query: 169 YTI---------TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219 YT T + + V+ DE P+ + G Sbjct: 130 YTTVTIKHVSGGTSVLLLKAYEQGREKWQSNTVDYVWFDEEP--PEDVY--FEGLTRINA 185 Query: 220 PNRFWIMTSNT-RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278 +T + + + D + ++ + II+ Y L Sbjct: 186 TQGLVALTLTPLKGRSNIVEHYLSSSSPDRQVIRMTLEETPHYTAKERIRIINSYPLHER 245 Query: 279 VARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE----------G 328 AR + P P ++ + + I G D Sbjct: 246 EARTKGE---PVLGSGRIFPI-LEQDIVITSFDIPEHWSQIGGMDFGWHHPFAAVQLAWN 301 Query: 329 GDKTVVVFRRGNIIEH 344 D V+ + Sbjct: 302 RDSDVIYVVKNYRCRE 317 >gi|313668069|ref|YP_004048353.1| hypothetical protein NLA_7310 [Neisseria lactamica ST-640] gi|313005531|emb|CBN86967.1| hypothetical protein NLA_7310 [Neisseria lactamica 020-06] Length = 761 Score = 41.5 bits (95), Expect = 0.20, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 47/175 (26%), Gaps = 14/175 (8%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 G GKT + L +I + + ++ AE K L + E Sbjct: 267 PTGGGKTFTSMAFALEHAKQHGMRRVIYVIPFTSIIEQNA-AEFRKAFGELGEQAVLEHH 325 Query: 145 SLSLHPS-GWYAELLEQSMGIDSKHYTITCRTYS-------EERPDTFVGPHNTHGMAVF 196 S + + ++ I T +R HN G + Sbjct: 326 STFDDGKLQNEVTKDKLRLASENWDAPIVVTTAVQFFESLFADRSSRCRKLHNIAGSVII 385 Query: 197 NDEASGTPDI----INKSILGFFTELNPNRFWIMTSNTR-RLNGWFYDIFNIPLE 246 DEA P I ++I + + + + FY F E Sbjct: 386 LDEAQMLPLNLLLPIMQAIKELAQNYHCSVVMCTATQPAVQAENGFYRGFENVRE 440 >gi|256822194|ref|YP_003146157.1| DEAD/DEAH box helicase domain-containing protein [Kangiella koreensis DSM 16069] gi|256795733|gb|ACV26389.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM 16069] Length = 458 Score = 41.5 bits (95), Expect = 0.20, Method: Composition-based stats. Identities = 20/225 (8%), Positives = 52/225 (23%), Gaps = 14/225 (6%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 E S + + V +SA G GKT ++ + Sbjct: 9 ELHSGLQKAFQKLKFEVPSEVQEKAIEPILDGHDVMVSAETGSGKTAAFLLPIIHNLLEN 68 Query: 106 PGM----SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161 P ++ +A + + + K L + + A+ Q Sbjct: 69 PSRHTSTRVLILAPTRELARQ-----IDKHARDL-----TQFTQIKTGLIIGGADYKYQQ 118 Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221 I G + DEA ++ + + Sbjct: 119 AIFRDNPEIIIATPGRMLEHCEKQGADLNDLEYLVIDEADKMFEMGFTDDVQAIAGFCKS 178 Query: 222 RFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFH 266 + + + + +++ + +++ + Sbjct: 179 DRQTLLFSATLKTKGIKHLTDYLMDEPQAIVLNSFEAKNDSIEQF 223 >gi|328789292|ref|XP_001120427.2| PREDICTED: probable ATP-dependent RNA helicase DDX52-like, partial [Apis mellifera] Length = 512 Score = 41.5 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 24/204 (11%), Positives = 51/204 (25%), Gaps = 28/204 (13%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS-- 103 + P Q++ + + A G GKT ++ + Sbjct: 95 CGYQYPTPIQMQAIPVMLQGRQ------------ILACAPTGSGKTAAFLLPIIHHLGGP 142 Query: 104 TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163 + G I ++ + K T + L + F++ +S + S Sbjct: 143 EKKGFRAIILSPTRELAKQTY-----RECLRLSEGYNFKIHIISKINQALNKYGPKSSQK 197 Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-------IINKSILGFFT 216 D T + + + DE + + I T Sbjct: 198 FD--ILITTPKRIIYLLNQDPPAISFNNVEWLIVDEVDKLFEDGIRCFRDQFEKISKSCT 255 Query: 217 ELNPNRFWIMTSNTRRLNGWFYDI 240 ++ +NT + W Sbjct: 256 SEKLHKAMFSATNTPIVTKWCRRN 279 >gi|298711631|emb|CBJ32687.1| conserved unknown protein [Ectocarpus siliculosus] Length = 1053 Score = 41.5 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 50/160 (31%), Gaps = 15/160 (9%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + S A++A RG GK+ + L +I A Sbjct: 261 QARALLTFMEAISEKTLRST-----VALTASRGRGKSAAI-GLCLAGAIAYGYSNIFVTA 314 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 S L + V K +L + + + + ++ ++ D + + Sbjct: 315 PSPENLSTV-FEFVLKGFDLLHFSEHLDYEVIQSTNPAFNRAVVRINVFKDHRQTIQYIQ 373 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF 214 D+ H + DEA+ P + KS+LG Sbjct: 374 P-----HDSEKLSHCE---LLAVDEAAAIPLPLVKSLLGP 405 >gi|241956218|ref|XP_002420829.1| DNA replication ATP-dependent helicase, putative [Candida dubliniensis CD36] gi|223644172|emb|CAX40981.1| DNA replication ATP-dependent helicase, putative [Candida dubliniensis CD36] Length = 1420 Score = 41.5 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 14/141 (9%), Positives = 37/141 (26%), Gaps = 3/141 (2%) Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 + + + + G GKTT+ A ++ + S++ + + + + N Sbjct: 965 DQIAALNKAFSANDYSLIVGMP-GTGKTTVIAQLI--KVLVSQKKSVLLTSYTNSAVDNI 1021 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 L + L + + + + + + + + Sbjct: 1022 LLKLKELDIDFLRLGYPQRVHKDIKDYIPGFKDSITTYEQYVNTYMRPKVIATTCLNITD 1081 Query: 184 FVGPHNTHGMAVFNDEASGTP 204 DEAS Sbjct: 1082 TCFNLRRTFDYCIVDEASQIT 1102 >gi|254450245|ref|ZP_05063682.1| helicase domain protein [Octadecabacter antarcticus 238] gi|198264651|gb|EDY88921.1| helicase domain protein [Octadecabacter antarcticus 238] Length = 937 Score = 41.5 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 20/212 (9%), Positives = 60/212 (28%), Gaps = 14/212 (6%) Query: 87 GIGKTTLNAWMMLWLISTRP-GMSIICIANS-----ETQLKNTLWAEVSKWLSMLPHRHW 140 G+GKT + A ++L + R I+ +A + E +++ + Sbjct: 122 GLGKT-IEAGLILRELKLRGMAKRILVVAPKGLVRQWQAEMRLHFGENFQFIEPSEFSAY 180 Query: 141 FEMQSLSLHPSGWYAELL--EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + + + + + + S+ + S + F + V D Sbjct: 181 RQFRDDEENLWRLHDQAICSLDSVKPLEGRRGWSAEQLSTYNRERFEDLISASWDLVIID 240 Query: 199 EASGTPDIINKSIL---GFFTELNPNRFWIMTSNT-RRLNGWFYDIFN-IPLEDWKRYQI 253 EA ++ G ++++ + F+ + + + + Sbjct: 241 EAHRMGGSTDQVARYKLGAALAEAAPYLLLLSATPHQGKTDQFHRLMQLLDRDSFPDENS 300 Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285 + E ++ + + + Sbjct: 301 ISSDRVRPFVVRTEKRLAIDAEGKPLFKPRVT 332 >gi|162329311|ref|YP_001604365.1| putative helicase [Acidianus filamentous virus 3] gi|157310688|emb|CAJ31513.1| putative helicase [Acidianus filamentous virus 3] Length = 564 Score = 41.5 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 47/157 (29%), Gaps = 20/157 (12%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 I A G GK+ ++ L ++ + +I NS T LK Sbjct: 201 IIKAPTGSGKSIISILATLEMLKNKKNAKVIYAVNSTTLLKQ---------------FQQ 245 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN--THGMAVFND 198 F + + + YS+++ + + + + D Sbjct: 246 FAKKEDLNFAIVSGELNELKKEKDSNLIALSISYYYSQKKRNKHNELRDIINNADLIIID 305 Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 EA TP SI + + +T+ R +G Sbjct: 306 EAHHTP---ANSIKALLLDSPNSIRLGLTATPYREDG 339 >gi|119472748|ref|ZP_01614702.1| helicase [Alteromonadales bacterium TW-7] gi|119444773|gb|EAW26077.1| helicase [Alteromonadales bacterium TW-7] Length = 1070 Score = 41.5 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 71/237 (29%), Gaps = 30/237 (12%) Query: 1 MPRLISTDQ--KLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEF 58 + + ST + + AEC N + G P QL Sbjct: 288 IAKTKSTFETYWQSPDFELFRGKAECKEKLINSLNEQRGVGQSSSQFYFDITPKTHQLAI 347 Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 +E + V FK + A G GKT ++A+ + P + +A+ E Sbjct: 348 LEKLS------VERGVHNRFKNLVVAATGTGKTIISAFDFKTVYDKNPNAHFLFVAHREE 401 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 LK S + +L + + E+ + P + + + Sbjct: 402 ILKQA----QSAYRGVLKNNDFGELWVGNYKPQRY---------------NQLFASIQTL 442 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 + + + + DE ++IL F P +T+ R +G Sbjct: 443 NSQIGSLNLTHDYYDYIVIDEVHHVSAASYRAILNHFA---PTILLGLTATPERQDG 496 >gi|86605886|ref|YP_474649.1| PhoH family protein [Synechococcus sp. JA-3-3Ab] gi|86554428|gb|ABC99386.1| PhoH family protein [Synechococcus sp. JA-3-3Ab] Length = 325 Score = 41.5 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 50/185 (27%), Gaps = 31/185 (16%) Query: 44 PLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS 103 L P Q E+++A+ H G GKT L A + + + Sbjct: 114 ELIRPKTPR--QQEYVQAIRTHDLCFGIGPA------------GTGKTYLAAVVAITALQ 159 Query: 104 TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163 R +I + + L ++ + + Y L Sbjct: 160 NREYERLILTRPA------------VEAGEKLGFLPGDLVEKVDPYLRPLYDALF--EFI 205 Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223 +K + + E P ++ + DEA T K T L Sbjct: 206 DPAKLPQLMAQGVIEVVPLAYMRGRTLSNAFIILDEAQNTTPEQMKMA---LTRLGFRSR 262 Query: 224 WIMTS 228 ++T Sbjct: 263 MVVTG 267 >gi|70990852|ref|XP_750275.1| DNA-directed DNA polymerase theta [Aspergillus fumigatus Af293] gi|66847907|gb|EAL88237.1| DNA-directed DNA polymerase theta, putative [Aspergillus fumigatus Af293] gi|159130748|gb|EDP55861.1| DNA-directed DNA polymerase theta, putative [Aspergillus fumigatus A1163] Length = 940 Score = 41.5 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 46/318 (14%), Positives = 83/318 (26%), Gaps = 54/318 (16%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ + + + +A G GK+ + +ML I P I Sbjct: 141 PWQASCL--LARGLLEGERH-------LVYTAPTGGGKSLVADVLMLKRIIEHPSRKAIL 191 Query: 113 IANSETQLKNTLWAEVSKWLSML---PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 + ++ L KWL + ++ + + +Y + I Y Sbjct: 192 VLPYVALVQEKL-----KWLRRIVENVEKNVPDDDDEAARLKPYYQRWKKLQKSIRVTGY 246 Query: 170 TITCRTYSE-----------ERPDTFVGPHNTHGMA-----VFNDEASGTPDII------ 207 RT + E+ ++ + V DE D Sbjct: 247 FGGSRTAASWADTDIAVCTIEKANSLINTAVEECSIGDLGVVVLDELHMLDDENRGYILE 306 Query: 208 NKSILGFFTELNPNRF--WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265 + + SNT L W + + R V + Sbjct: 307 LMVTKLLLLQQDIQIIGMSATLSNTELLADWMNAKY---------FISTYRPVPIDEYLV 357 Query: 266 HEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYIEEAMSREA-IDDLYAPLIMGC 322 +E I + + + + PH I+ + RE A + + Sbjct: 358 YENAIYPAATSRQLFQTITRLKSMKTISLTDTIPPHRMIQCSKHRELANPMTNAMVALAV 417 Query: 323 DIAGEGGDKTVVV-FRRG 339 D A G V R+G Sbjct: 418 DTAAAGYGALVFCGSRQG 435 >gi|118382948|ref|XP_001024630.1| Type III restriction enzyme, res subunit family protein [Tetrahymena thermophila] gi|89306397|gb|EAS04385.1| Type III restriction enzyme, res subunit family protein [Tetrahymena thermophila SB210] Length = 2279 Score = 41.5 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 21/171 (12%), Positives = 45/171 (26%), Gaps = 21/171 (12%) Query: 36 FPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTT-LN 94 FP G + ++ Q + + + A G GKT + Sbjct: 1427 FPEGEAVLKELGITTFNKIQTQVLNQFYSQSE-----------NIFLGAPTGSGKTACII 1475 Query: 95 AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWY 154 M+ + +I +A + ++ SK L + + Sbjct: 1476 VAMLRIFKTYYENKKVIYVAP-FESICQNMYKLFSKAFKHLGKKVAILTGQTKTDNQIFT 1534 Query: 155 AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 + S +++ I R + + N + DE + Sbjct: 1535 KYDIIIS---TPENWDINTRKWKKT-----QQIINKNIKLFIADELHMLNE 1577 >gi|116195262|ref|XP_001223443.1| hypothetical protein CHGG_04229 [Chaetomium globosum CBS 148.51] gi|88180142|gb|EAQ87610.1| hypothetical protein CHGG_04229 [Chaetomium globosum CBS 148.51] Length = 1676 Score = 41.5 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 17/135 (12%), Positives = 39/135 (28%), Gaps = 16/135 (11%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS--------MLPHR 138 G GKT ++ L I+ A + + N L + + + + P R Sbjct: 1283 GTGKTETIVEIIRALQICFDKPRILVTAPTHNAVDNVLRRYIGRVSATVQASNPHLTPLR 1342 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR--------TYSEERPDTFVGPHNT 190 E++ ++ + + + ++ + ++ Sbjct: 1343 VSTEIRKVAEDLRKYTCDAMAGQEIHANRAAMDQAKKRVKQCCIIFTTCIGAGIGLLRPE 1402 Query: 191 HGMAVFNDEASGTPD 205 V DEAS + Sbjct: 1403 VFDIVIVDEASQQTE 1417 >gi|328947484|ref|YP_004364821.1| Type I site-specific deoxyribonuclease [Treponema succinifaciens DSM 2489] gi|328447808|gb|AEB13524.1| Type I site-specific deoxyribonuclease [Treponema succinifaciens DSM 2489] Length = 850 Score = 41.5 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 30/244 (12%), Positives = 67/244 (27%), Gaps = 24/244 (9%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFS---QPHRWQL- 56 M R + + E+ + +A + V F + P + P +Q Sbjct: 156 MARWRGVNAEKIAEVENRMEYAIDGNAKFYDVPLCFEENLMNTPFYSGADCYPPRYYQRN 215 Query: 57 ---EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST-RPGMSIIC 112 +EA+ H + I+ G GKT A+ ++W + ++ Sbjct: 216 AVNRTLEAIAKHQA-----------RILIAMATGTGKTY-TAFQIVWRLIESGTKKKVLY 263 Query: 113 IANSETQLKNTL---WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 +A+ + ++ + + K + + + +S + + S + Sbjct: 264 LADRNNLVDQSIQQDFKPLDKVIHK-INFQKEDKSKISAYQVYFALYQQLDSTKHHNDEE 322 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 T E + DE + N MT+ Sbjct: 323 EETEEEIENELSKYKEFFTPDFFDLIIVDECHRGSAKADSRWRKILEYFNGATQIGMTAT 382 Query: 230 TRRL 233 + Sbjct: 383 PKET 386 >gi|297583090|ref|YP_003698870.1| SNF2-like protein [Bacillus selenitireducens MLS10] gi|297141547|gb|ADH98304.1| SNF2-related protein [Bacillus selenitireducens MLS10] Length = 458 Score = 41.5 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 27/204 (13%), Positives = 56/204 (27%), Gaps = 18/204 (8%) Query: 87 GIGKTTLN-AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 G+GKT + + L+ + ++ +A ++ E+ KW + P R+ + + Sbjct: 29 GLGKTVITLTALFDLLLDSFHVRKVLVVAP-LRVGRDVWPEELDKWDHLEPLRYEVAIGN 87 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 + + + ++ + I Y V DE S Sbjct: 88 PEERLAALHRSAPITIINRENITWLIEKSGYP------------FDFDMVVIDELSSFKS 135 Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNI----PLEDWKRYQIDTRTVEGI 261 +K + + + T NG E R+ R Sbjct: 136 HQSKRFKSMMKVRSKVTRIVGLTGTPSSNGLMDLWAEYRLLDKGERLGRFISHYRDAFFE 195 Query: 262 DSGFHEGIISRYGLDSDVARIEIL 285 ++ +I Y L Sbjct: 196 PDKRNQQVIFTYKLKPGAEEQIYE 219 >gi|154281325|ref|XP_001541475.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] gi|150411654|gb|EDN07042.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] Length = 908 Score = 41.5 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 21/153 (13%), Positives = 40/153 (26%), Gaps = 5/153 (3%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + + + + + + + + A G GK+ + +ML + P I + Sbjct: 113 QRQAVSSTPGPSQNPLLSLSHQSYGLPPHAPTGGGKSLIADVLMLKRVIEDPAKRAILVL 172 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 ++ L KWL + + + A Q Sbjct: 173 PYVALVQEKL-----KWLRRVVEGVDKNVDMPTTADEASSAPKWRQPQKSIRVTGFFGGS 227 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207 DT + V DE D Sbjct: 228 KTRATWTDTDIAVSLMTWGVVVLDELHMLDDEH 260 >gi|260939694|ref|XP_002614147.1| hypothetical protein CLUG_05632 [Clavispora lusitaniae ATCC 42720] gi|238852041|gb|EEQ41505.1| hypothetical protein CLUG_05632 [Clavispora lusitaniae ATCC 42720] Length = 1006 Score = 41.5 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 32/209 (15%), Positives = 59/209 (28%), Gaps = 17/209 (8%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 A++AGRG GK+ + +I + S LK L+ V + L + Sbjct: 275 VALTAGRGRGKSAALGIAIA-AAIAHGYSNIFVTSPSPENLKT-LFEFVFRGFDALGYAE 332 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + ++ + ++ + + V DE Sbjct: 333 HADYDAVQSTNPSFNKAVVRVDVKRSHRQTVQYIAPTDHHLLGQAE--------LVIVDE 384 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 A+ P + + +LG + F T N G + I K Q D+ Sbjct: 385 AAAIPLPVVRRLLGPYL-----VFMASTINGYEGTGRSLSLKLIQQLREKSAQADSSDTG 439 Query: 260 GIDSGFHEG--IISRYGLDSDVARIEILG 286 I G + ++L Sbjct: 440 RTLREVVLDEPIRYAPGDPVEKWLNKLLC 468 >gi|261856214|ref|YP_003263497.1| P-type conjugative transfer ATPase TrbB [Halothiobacillus neapolitanus c2] gi|261836683|gb|ACX96450.1| P-type conjugative transfer ATPase TrbB [Halothiobacillus neapolitanus c2] Length = 346 Score = 41.5 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 49/168 (29%), Gaps = 15/168 (8%) Query: 32 VMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF--------KCAIS 83 V + +G EH ++PH + + ++ H +N + T + Sbjct: 117 VFTLADYIERGILAEHSAEPHDFLSPIVSSMQSHAADWLNLALSTRLESAIREKMNILVV 176 Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 G G GKTTL ++ L P I+ I ++ A + + +P Sbjct: 177 GGTGSGKTTLANALLHSLSEQCPHDRIVAIEDTMELQVRVENAVLLRASEQVPMSRLLRA 236 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191 E+ ++++ P H Sbjct: 237 TMRLRPDRIIVGEV-------RGGEAYTLLKSWNSGHPGGLATIHANS 277 >gi|145475913|ref|XP_001423979.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124391041|emb|CAK56581.1| unnamed protein product [Paramecium tetraurelia] Length = 1079 Score = 41.5 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 41/334 (12%), Positives = 92/334 (27%), Gaps = 45/334 (13%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + ++ S D+++++ + + + + K F F + + LE QL + Sbjct: 237 IAKVESKDEEVDESILDADKCLKVLKKSKQF---PFLFEAEDSLLEQQPFLLNGQLRIYQ 293 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKT--------TLNAWMMLWLISTRPGMSIIC 112 V VH +++ + ++ G+GKT L A +W P + I+ Sbjct: 294 LVGVHWMASL---HQQQMNGILADEMGLGKTIQTIALLAYLAANKQIWG----PHLVIVP 346 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 + E +W +F +++L Sbjct: 347 TSILMN-----WEIEFKRWCPAFKIMTYFGSPKERKLKRQGWSQLNS----------FHV 391 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232 C T + + DEA + N ++T Sbjct: 392 CITSYKIVIQDSKVFKRKKWYYMILDEAQHIKN-FKSQRWQVLLNFNTRSRLLLTGTP-- 448 Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292 L +I+++ + I + ++ + +Q Sbjct: 449 LQNDLGEIWSLL----HFLMPSIFDSHQDFLQWFMSIEKAISENKTISE-----EVLRQL 499 Query: 293 VNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAG 326 + P E +I+ CD++ Sbjct: 500 HDILRPFVLRRLKKDVEKQLPEKREVIVKCDLSR 533 >gi|255011290|ref|ZP_05283416.1| putative ATPase [Bacteroides fragilis 3_1_12] gi|313149101|ref|ZP_07811294.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313137868|gb|EFR55228.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 375 Score = 41.5 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 25/257 (9%), Positives = 60/257 (23%), Gaps = 30/257 (11%) Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 + + + + R GK++L M L+ + + I + ++ + Sbjct: 23 RKQLKELLGSGINVMLISPRRWGKSSLVKVAMDELMHEDKQVRVCYIDAFSIKTESEFYR 82 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 ++ + + H ++ + E D Sbjct: 83 IFAREVIACAASTLEKRLEDVRH--FLKTVSPSITLKSTPTDTMSFDLKFELEERDVMEI 140 Query: 187 PHNTH--------GMAVFNDEASGTPDII-NKSILGFFTE-------------LNPNRFW 224 + V DE + + + G + Sbjct: 141 LKLPEKIAIAKSIRLIVCIDEFQQLAQLSGYRDLEGKMRSVWQKQQQVSYCFYGSKRHMM 200 Query: 225 IMT----SNTRRLNGWFYDIFNIPLEDWKRYQIDT--RTVEGIDSGFHEGIISRYGLDSD 278 + SN G + I E+W + ++ RT + I E + S Sbjct: 201 LDIFNNSSNPFYRFGQVLFLQKIKKEEWVPFIVNAFKRTNKEISKEQAEQLCDIVKCHSW 260 Query: 279 VARIEILGQFPQQEVNN 295 + + Sbjct: 261 YLQQLCYFVWSGTSDKV 277 >gi|134101555|ref|YP_001107216.1| ATPase [Saccharopolyspora erythraea NRRL 2338] gi|291008163|ref|ZP_06566136.1| ATPase [Saccharopolyspora erythraea NRRL 2338] gi|133914178|emb|CAM04291.1| ATPase [Saccharopolyspora erythraea NRRL 2338] Length = 1118 Score = 41.5 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 37/124 (29%), Gaps = 7/124 (5%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKW-LSMLPHR 138 A+ G GKT L ++ L+ R G ++ +NS ++N L A + + R Sbjct: 743 LAVQGPPGAGKTYLAGKLIAHLV--RSGRTVGVTSNSHKAVENVLSAALGNAPSAACAKR 800 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 L + + + + ++ + D Sbjct: 801 PRRAPDPALPWEQPKTNNALAKWRDEHNDGHLVGGTAWTFANA----AVREEPFDVLVID 856 Query: 199 EASG 202 EA Sbjct: 857 EAGQ 860 >gi|145488703|ref|XP_001430355.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124397452|emb|CAK62957.1| unnamed protein product [Paramecium tetraurelia] Length = 1100 Score = 41.5 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 41/334 (12%), Positives = 92/334 (27%), Gaps = 45/334 (13%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60 + ++ S D+++++ + + + + K F F + + LE QL + Sbjct: 237 IAKVESKDEEVDESILDADKCLKVLKKSKQF---PFLFEAEDSLLEQQPFLLNGQLRIYQ 293 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKT--------TLNAWMMLWLISTRPGMSIIC 112 V VH +++ + ++ G+GKT L A +W P + I+ Sbjct: 294 LVGVHWMASL---HQQQMNGILADEMGLGKTIQTIALLAYLAANKQIWG----PHLVIVP 346 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 + E +W +F +++L Sbjct: 347 TSILMN-----WEIEFKRWCPAFKIMTYFGSPKERKLKRQGWSQLNS----------FHV 391 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232 C T + + DEA + N ++T Sbjct: 392 CITSYKIVIQDSKVFKRKKWYYMILDEAQHIKN-FKSQRWQVLLNFNTRSRLLLTGTP-- 448 Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292 L +I+++ + I + ++ + +Q Sbjct: 449 LQNDLGEIWSLL----HFLMPSIFDSHQDFLQWFMSIEKAIQENKTISE-----EVLRQL 499 Query: 293 VNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAG 326 + P E +I+ CD++ Sbjct: 500 HDILRPFVLRRLKKDVEKQLPEKREIIVKCDLSR 533 >gi|66046145|ref|YP_235986.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae pv. syringae B728a] gi|63256852|gb|AAY37948.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae pv. syringae B728a] Length = 1473 Score = 41.5 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 38/314 (12%), Positives = 86/314 (27%), Gaps = 39/314 (12%) Query: 31 FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90 F+ R+F + L W +E + + + + + + I AG G GK Sbjct: 831 FIRRYFVDREEVLKLATSE--ESW-RSIVEKLSA-AQRIIVSDDDDVNRL-ILAGPGSGK 885 Query: 91 TTLNAWMMLWLISTRP-GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM---QSL 146 T + + +L+ R I N E+ + L L F + Sbjct: 886 TRVIVHRIAYLLRVRRVPARCIVALTFNRHAAN----EIKQRLIKLVGADAFGVNVMTYH 941 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCR----TYSEERPDTFVGPH---NTHGMAVFNDE 199 + + + + + + + + DE Sbjct: 942 RMAMRLTGTRFERGETLEEGRLAQVMGEAVELLEGKRQVEGEDDLREQLMRGYRYILVDE 1001 Query: 200 ASGTPDIIN---KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256 D+ ++ G +E + + Y + +R++ + Sbjct: 1002 YQDIDDLQYRLVSALAGRKSEEEGRLCILAVG---DDDQNIYAWRDTNNRYIERFRDEYS 1058 Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE-VNNFIPHNYIEEAMSREAIDDLY 315 + + A ++G+ P + ++ I + + AM + + Sbjct: 1059 ATKNYLVDNYRSSGRIID-----AANRVIGRNPDRLKKDHPIQIDTVRRAMPKGGDWET- 1112 Query: 316 APLIMGCDIAGEGG 329 DI EG Sbjct: 1113 ------LDIEREGR 1120 >gi|317470487|ref|ZP_07929875.1| type III restriction enzyme [Anaerostipes sp. 3_2_56FAA] gi|316902002|gb|EFV23928.1| type III restriction enzyme [Anaerostipes sp. 3_2_56FAA] Length = 251 Score = 41.5 bits (95), Expect = 0.22, Method: Composition-based stats. Identities = 25/188 (13%), Positives = 55/188 (29%), Gaps = 23/188 (12%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q ++ D + K I A G GKTTL + R G + Sbjct: 15 RPYQERILDRADTYLKDG---------KIHIVAPPGSGKTTLG-----IELIRRLGRPCL 60 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 ++ S ++ + + + + S +H + Q++ + + Sbjct: 61 ILSPS-AVIRQQW---LERVKEAFIQKDDQSLLSDDIHAPALITSVTYQALHFGMEQISG 116 Query: 172 TCRTYSEERPDT-----FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226 + E+ D+ + DE KS+ F ++ + Sbjct: 117 PKSVFEAEQEDSKVFNLINAVKAAEIGTICLDECHHLRSEWWKSLEKFMMKMENVCVVSL 176 Query: 227 TSNTRRLN 234 T+ + Sbjct: 177 TATPPYDS 184 >gi|162447941|ref|YP_001621073.1| putative DNA/RNA helicase [Acholeplasma laidlawii PG-8A] gi|161986048|gb|ABX81697.1| putative DNA/RNA helicase [Acholeplasma laidlawii PG-8A] Length = 986 Score = 41.5 bits (95), Expect = 0.22, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 55/185 (29%), Gaps = 34/185 (18%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P+ Q +E ++ +S N K I A G GKT L+A + + + Sbjct: 236 PNEMQEMALEGLNNIRNSGGN-------KALIIAATGTGKTYLSA----FDVFQLRPKKV 284 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + + + L++ L + D + Sbjct: 285 LFVVHRGKILRDAL--------------------RTFKTIMPEVSMGEFVGSKKDLESDY 324 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 + + + D ++ + DEA + + I +FT P MT+ Sbjct: 325 LFASVQTISKIDNLNLFDPSYFDYIIIDEAHRSAADSYQRITSYFT---PKFLLGMTATP 381 Query: 231 RRLNG 235 R + Sbjct: 382 ERTDS 386 >gi|309803522|ref|ZP_07697615.1| type III restriction enzyme, res subunit [Lactobacillus iners LactinV 11V1-d] gi|308164406|gb|EFO66660.1| type III restriction enzyme, res subunit [Lactobacillus iners LactinV 11V1-d] Length = 879 Score = 41.5 bits (95), Expect = 0.22, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 59/186 (31%), Gaps = 16/186 (8%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q E + + ++ N I A G GKT + A ++L+L + + Sbjct: 37 REYQKEAFQYFVTYFENDGLRKNKQIHTLFHMA-TGAGKTVMMAGLILYLYTKGYRKFLF 95 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + + N L +L+ L ++ F + L ++ S + Sbjct: 96 FVNQT-----NILKKTEENFLNTLSSKYLFADELSYLGMKIKVKKVDRFSDIPLDDDIEL 150 Query: 172 TCRTYSEERPDTFVGPHN--------THGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223 T + D + N + + +DE+ K TE + + Sbjct: 151 LFTTTQKLHMDMWDAKENAPTCADFENDKIVLISDESHHINSNTKK--KKTSTEEDDEKS 208 Query: 224 WIMTSN 229 W T N Sbjct: 209 WEYTVN 214 >gi|302812373|ref|XP_002987874.1| hypothetical protein SELMODRAFT_447130 [Selaginella moellendorffii] gi|300144493|gb|EFJ11177.1| hypothetical protein SELMODRAFT_447130 [Selaginella moellendorffii] Length = 483 Score = 41.5 bits (95), Expect = 0.22, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 56/212 (26%), Gaps = 27/212 (12%) Query: 2 PRLISTDQKLEQELHEMLMHAE-CVLSFKNF--VMRFFPWGIKGKPLEHFSQPHRWQLEF 58 P+ + ++E ++ + L+ S K F + P F +P + Q E Sbjct: 53 PKPEKLNDEVETKIEKELVEGNSLYTSAKTFEELKISEPLLRGIYSEMKFERPSKIQAET 112 Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN--AWMMLWLISTRPGMSIICIANS 116 + + NP A G GKTT + S +C+ + Sbjct: 113 LPLIM----------NPPHRNLVAQAHNGSGKTTCFVLGMLSRVNTSLHEPQ-ALCVCPT 161 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 + ++ E ++ S+ I Sbjct: 162 RELA----------LQNQAVLERMARFTQITSTCIIPPTENIKSSLRGHIHDQVIFGTPG 211 Query: 177 SEERPD-TFVGPHNTHGMAVFNDEASGTPDII 207 S ER H + DEA D Sbjct: 212 SLERAILNDRNLDVQHLNVLVFDEADHMLDQN 243 >gi|260789510|ref|XP_002589789.1| hypothetical protein BRAFLDRAFT_90470 [Branchiostoma floridae] gi|229274972|gb|EEN45800.1| hypothetical protein BRAFLDRAFT_90470 [Branchiostoma floridae] Length = 987 Score = 41.5 bits (95), Expect = 0.22, Method: Composition-based stats. Identities = 20/144 (13%), Positives = 42/144 (29%), Gaps = 8/144 (5%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G+GKT + +L+ + I S T + E+++W L ++ Q Sbjct: 529 GLGKTAQAISFLAYLLEQGDDGPHLIIVPSSTL--DNWVRELAQWCPDLKVLIYYGSQMD 586 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E +E + + + + V H DE ++ Sbjct: 587 RQAMRDDILEGVEDFHVLVTTYQCCVGSATDRTLFNKKVAFH-----YAILDEGHMLKNM 641 Query: 207 INKSILGFFTELNPNRFWIMTSNT 230 + + R ++T Sbjct: 642 QTQRYQQLLRIRSERRL-LLTGTP 664 >gi|328715040|ref|XP_001943598.2| PREDICTED: putative U5 small nuclear ribonucleoprotein 200 kDa helicase-like isoform 1 [Acyrthosiphon pisum] Length = 2144 Score = 41.5 bits (95), Expect = 0.22, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 49/221 (22%), Gaps = 28/221 (12%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 E F Q + Q + AV I A G GKT + + + L+S Sbjct: 1324 ERFHQFNPIQTQVFNAVYNSDE-----------NVFIGAPTGSGKTAIAEFALYRLLSQN 1372 Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 P + + E+Q + S W F + + + Sbjct: 1373 PDHRCVYLVAKESQAELIY----SSWH------VIFGIGLARKVVLLTGEIGTDLKLLAK 1422 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL-------GFFTEL 218 + T + + + DE + ++ Sbjct: 1423 GQIIVTTAEKWDVLSRRWKQRKNVQNINLFIVDELQLIGGEDGPVLEIVCSRMRYIASQT 1482 Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 + S P + R V Sbjct: 1483 EKQMRVVALSAPLADARDLALWLGAPATTTFNFHPSVRPVP 1523 >gi|328715038|ref|XP_003245515.1| PREDICTED: putative U5 small nuclear ribonucleoprotein 200 kDa helicase-like isoform 2 [Acyrthosiphon pisum] Length = 2148 Score = 41.5 bits (95), Expect = 0.22, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 49/221 (22%), Gaps = 28/221 (12%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 E F Q + Q + AV I A G GKT + + + L+S Sbjct: 1328 ERFHQFNPIQTQVFNAVYNSDE-----------NVFIGAPTGSGKTAIAEFALYRLLSQN 1376 Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 P + + E+Q + S W F + + + Sbjct: 1377 PDHRCVYLVAKESQAELIY----SSWH------VIFGIGLARKVVLLTGEIGTDLKLLAK 1426 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL-------GFFTEL 218 + T + + + DE + ++ Sbjct: 1427 GQIIVTTAEKWDVLSRRWKQRKNVQNINLFIVDELQLIGGEDGPVLEIVCSRMRYIASQT 1486 Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 + S P + R V Sbjct: 1487 EKQMRVVALSAPLADARDLALWLGAPATTTFNFHPSVRPVP 1527 >gi|269140417|ref|YP_003297118.1| type I site-specific deoxyribonuclease, HsdR family [Edwardsiella tarda EIB202] gi|267986078|gb|ACY85907.1| type I site-specific deoxyribonuclease, HsdR family [Edwardsiella tarda EIB202] gi|304560213|gb|ADM42877.1| Type I restriction-modification system, restriction subunit R [Edwardsiella tarda FL6-60] Length = 1031 Score = 41.5 bits (95), Expect = 0.22, Method: Composition-based stats. Identities = 21/188 (11%), Positives = 54/188 (28%), Gaps = 5/188 (2%) Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICI--ANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 +G GK+ W+ W+ P ++ + + +++ V + + Sbjct: 278 QGSGKSLTMVWLAKWIRENVPNSRVLIVTDRTELDEQIESVFMGVDEEIYRTSSGSDLIA 337 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 +P + + + +++ T +E + + VF DE Sbjct: 338 TLNHPNPWLICSLVHKFGRRSEAEDAAATDDFITELQQSLTKTFRAKGDLFVFVDECH-- 395 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + T + P +I + T + + Y+ D +G+ Sbjct: 396 -RTQSGKLHNAMTAILPEALFIGFTGTPLMKKDKKKSVEVFGPYIHTYKFDEAVADGVVL 454 Query: 264 GFHEGIIS 271 Sbjct: 455 DLRYEARD 462 >gi|225573155|ref|ZP_03781910.1| hypothetical protein RUMHYD_01346 [Blautia hydrogenotrophica DSM 10507] gi|225039484|gb|EEG49730.1| hypothetical protein RUMHYD_01346 [Blautia hydrogenotrophica DSM 10507] Length = 459 Score = 41.5 bits (95), Expect = 0.22, Method: Composition-based stats. Identities = 21/181 (11%), Positives = 47/181 (25%), Gaps = 13/181 (7%) Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GMSIICIANSETQLK 121 + + G KT + + L + P +I + Sbjct: 244 FLQEALMQPASKAPLVIVKGMAGTAKTFYSLAVGLEKLINNPSGEYRKMIVCRPNSQFDS 303 Query: 122 NTLW---AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 + + E K ++ + +L + E ++ K I R + Sbjct: 304 DIGFLPGDEQDKIYPLM----RPIVDNLEQLIDSNIEKRYENEQELNDKIEEIFDRGLIQ 359 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 F+ + + DEA + G T I+ + +++ Sbjct: 360 TEALNFIRGRSIVKTYLIIDEAQNMTPNQ---MKGIITRAGEGTKIILLGDPAQIDRPLL 416 Query: 239 D 239 D Sbjct: 417 D 417 >gi|254830644|ref|ZP_05235299.1| DNA segregation ATPase FtsK/SpoIIIE [Listeria monocytogenes 10403S] Length = 1498 Score = 41.5 bits (95), Expect = 0.22, Method: Composition-based stats. Identities = 32/328 (9%), Positives = 76/328 (23%), Gaps = 44/328 (13%) Query: 26 LSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAG 85 L NF W KPL+ ++ ++ + A+ + Sbjct: 962 LHPVNF---EEAWKEPKKPLQATIG-------LLDQPELQAQVPLTLDLTKDGHVAVFSS 1011 Query: 86 RGIGKTTLNAWMMLWLISTRPGMS------------IICIANSETQLKNTLWAE---VSK 130 G GK+T +++ L ++ + + + E + K Sbjct: 1012 PGFGKSTFLQSLVMDLARQHNPEQLHVYLLDFGTNGLLPLVDLPHIADTMMVDEVEKIQK 1071 Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190 +L + + + LS + + S + + + Sbjct: 1072 FLRICLNEIKTRKKLLSQYRVANIEQYERASGKELPNIIIVLDNYDAVKDAGLGDDF--E 1129 Query: 191 HGMAVFNDEASGTPDIINKSILGF--------FTELNPNRFWIMTSNTRRLNGWFYDIFN 242 + E + + I + + ++ Sbjct: 1130 KIITQITREGASI--GMFMIISASRHMSLRTQMATNIKQMIALYLIDKNDISSTVGRTDT 1187 Query: 243 IPLEDWKRYQIDTRTVEGIDS------GFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 E R + TV + I ++ + R G+ P+ Sbjct: 1188 PLEEYPGRALVKLETVTTFQTTLPSQGEETIQQIEGIRNEAKLMREGWQGELPESVPMIP 1247 Query: 297 IPHNYIEEAMSRE-AIDDLYAPLIMGCD 323 + E + +G D Sbjct: 1248 EKIKLADFCEWMETKEVVANGNIPIGVD 1275 >gi|3337256|gb|AAC34148.1| terminase subunit [Enterobacteria phage 186] Length = 589 Score = 41.5 bits (95), Expect = 0.22, Method: Composition-based stats. Identities = 43/350 (12%), Positives = 86/350 (24%), Gaps = 53/350 (15%) Query: 34 RFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93 F I+ F Q +QL++ A H + I R IG T Sbjct: 128 FFSDEAIEKLEELFFDQSFEYQLQWYRAGLAHRIRD------------ILKSRQIGATFY 175 Query: 94 NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF--EMQSLSLHPS 151 + L G + I ++ S+TQ ++ E + L + + Sbjct: 176 FSREALLRALKT-GHNQIFLSASKTQAY--VFREYIIQFARLVDVDLTGDPIVIGNNGAK 232 Query: 152 GWYAELLEQSMGIDSKH-------YTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGT 203 + + + + + + H A G Sbjct: 233 LIFLGTNSNTAQSHNGDLYVDEIFWIPNFQKLRKVASGMASQKHLRSTYFSTPSTLAHGA 292 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + +R I S+ G D W++ + G + Sbjct: 293 YPFWSGELFNKGRSRIADRIEIDISHRALAGGQLCDD-----GQWRQIVTIEDALAGGCT 347 Query: 264 GFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY-------- 315 F + R D D + + +F + + P ++ M + Sbjct: 348 LFDLDQLKRENSDED-FKNLFMCEFVD-DKASVFPFEELQRCMVDVMEEWEDFAPFADHP 405 Query: 316 ---APLIMGCDIAGEGGDKTVVVFRRGN--------IIEHIFDWSAKLIQ 354 P+ +G D + G + + W Sbjct: 406 FGSRPVWIGYDPSHTGD--SAGCVVLAPPVVSGGKFRMLERHQWKGMDFA 453 >gi|110834947|ref|YP_693806.1| ATP-dependent RNA helicase DbpA [Alcanivorax borkumensis SK2] gi|110648058|emb|CAL17534.1| ATP-dependent RNA helicase DbpA [Alcanivorax borkumensis SK2] Length = 459 Score = 41.5 bits (95), Expect = 0.22, Method: Composition-based stats. Identities = 28/274 (10%), Positives = 71/274 (25%), Gaps = 33/274 (12%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRP-GMSIICIANSETQLKNTLWAEVSKWLSMLPH- 137 A G GKT +L ++ R G + + + E+ + + Sbjct: 44 VIAQASTGSGKTAAFGLGLLHPLNPRYYGCQALVLCPTRELADQVAV-EIRRLARGPGNI 102 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + + P E + + + + Sbjct: 103 KVLTLCGGQPIGPQIGSLEH---------GAQIVVGTPGRVLKHLSKGTLSLDGLNTLVL 153 Query: 198 DEASGTPDIINKSILGFF---TELNPNRFWIMTSNTRR--------LNGWFYDIFNIPLE 246 DEA D+ + T + ++ + + Sbjct: 154 DEADRMLDMGFYDSIAEVIRQTPPRRQTLLFSATYPPGIKQLAETFMSNPQHVEVETLHD 213 Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR-------IEILGQFPQQEVNNFIPH 299 + + Q I+ + S V +++ Q +Q ++ + + Sbjct: 214 NSQIEQRYYEVEPFQREEAVASAIACFRPVSCVVFCVTKQQCQDVVNQLCRQGLSAMVLN 273 Query: 300 NYIEEAMSREAID---DLYAPLIMGCDIAGEGGD 330 + +E+ E + + +++ D+A G D Sbjct: 274 SDLEQRERDEVLTLFANRSLSVLVATDVAARGLD 307 >gi|111219429|ref|XP_646844.2| hypothetical protein DDB_G0268924 [Dictyostelium discoideum AX4] gi|90970905|gb|EAL73051.2| hypothetical protein DDB_G0268924 [Dictyostelium discoideum AX4] Length = 1772 Score = 41.5 bits (95), Expect = 0.22, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 44/152 (28%), Gaps = 8/152 (5%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 I G GKTT +++ L++ P I+ S + K L L + Sbjct: 1261 TLIQGPPGTGKTTTIYYLLSILLAINPEFKILVCGPSHASVDEIAKRCSKKKLIGLDGKP 1320 Query: 140 WFEM-----QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT-HGM 193 + + ++ P + ++ S +S N Sbjct: 1321 YLPNMVRIGKKENISPDCHSISIFNKTQREKSDSIYRASIVFSTLSGSGSETVKNNFRAD 1380 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWI 225 + DE++ + + SI+ + Sbjct: 1381 IILVDESTQSTEP--SSIIPLCIGNIEKLILV 1410 >gi|281200302|gb|EFA74523.1| DEAD/DEAH box helicase [Polysphondylium pallidum PN500] Length = 2185 Score = 41.5 bits (95), Expect = 0.22, Method: Composition-based stats. Identities = 25/192 (13%), Positives = 47/192 (24%), Gaps = 22/192 (11%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 K K + +F + Q + + + I+A GKT +L Sbjct: 1349 KAKEIFNFKYFNAIQTQVFDCLYKGDD-----------NALIAAPANSGKTVCAELAVLR 1397 Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 + P + IA + L K+ + L R + + Sbjct: 1398 ELKKNPNAKCVYIAPMQDLATLRLRDWTFKFQNTLGKRV----------VELTGEPITDN 1447 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220 + + T + + DE + +IL Sbjct: 1448 KLLESASIVIATAEKWDILSRRWKQRKSIQNISLFVVDELHMIGGGADGAILEIIVSR-M 1506 Query: 221 NRFWIMTSNTRR 232 I T + R Sbjct: 1507 RFIAIQTGSPIR 1518 >gi|281420729|ref|ZP_06251728.1| putative prophage LambdaSa03, helicase [Prevotella copri DSM 18205] gi|281405021|gb|EFB35701.1| putative prophage LambdaSa03, helicase [Prevotella copri DSM 18205] Length = 553 Score = 41.5 bits (95), Expect = 0.22, Method: Composition-based stats. Identities = 33/286 (11%), Positives = 67/286 (23%), Gaps = 48/286 (16%) Query: 49 SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW----MMLWLIST 104 + +Q E NV I + G GKT + ++ W Sbjct: 34 TGLRPYQAEM--------KHNVYGLWDRIDNVMLQMPTGTGKTIVFTSVVKDILRWCNLH 85 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 I+ +A+ + + L + ++ + Sbjct: 86 SRESKILIVAHRRE--------LIRQASRKLGNIP---------------HGVIVSGEKL 122 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224 D + + + DEA + + F N + Sbjct: 123 DLDKSIQVASIQTFMSRRHYEIMRRVQFDFIIIDEAHHCMAPGYQKLWEMF--PNSKKLG 180 Query: 225 IMTSNTRRL-----NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279 + T+ R+ F DI +W Q + I + + Sbjct: 181 V-TATPWRMSHCGFTSLFGDIVLAKSIEWFVNQGYLANYDYISIKPTSEVQHAINGIDRM 239 Query: 280 ARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP--LIMGCD 323 G + E++ I I + + +I D Sbjct: 240 GA---DGDYLDSELSAVIDKAKIRAGLYKSYEKYAKGKKGIIYAID 282 >gi|119496737|ref|XP_001265142.1| DNA-directed DNA polymerase theta, putative [Neosartorya fischeri NRRL 181] gi|119413304|gb|EAW23245.1| DNA-directed DNA polymerase theta, putative [Neosartorya fischeri NRRL 181] Length = 940 Score = 41.5 bits (95), Expect = 0.22, Method: Composition-based stats. Identities = 46/318 (14%), Positives = 84/318 (26%), Gaps = 54/318 (16%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ + + + +A G GK+ + +ML I P I Sbjct: 141 PWQASCL--LARGLLEGERH-------LVYTAPTGGGKSLVADVLMLKRIIEHPSRKAIL 191 Query: 113 IANSETQLKNTLWAEVSKWLSML---PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 + ++ L KWL + ++ + + +Y + I Y Sbjct: 192 VLPYVALVQEKL-----KWLRRIVENVEKNVPDDDDETARSKPYYQRWKKLQKSIRVTGY 246 Query: 170 TITCRTYSE-----------ERPDTFVGPHNTHGMA-----VFNDEASGTPDII------ 207 RT + E+ ++ + V DE D Sbjct: 247 FGGSRTAASWADTDIAVCTIEKANSLINSAVEECSIGDLGVVVLDELHMLDDEHRGYILE 306 Query: 208 NKSILGFFTELNPNRF--WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265 + + SNT L W ++ + R V + Sbjct: 307 LMVTKLLLLQQDIQIIGMSATLSNTELLADWMNAMY---------FISTYRPVPIDEYLV 357 Query: 266 HEGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYIEEAMSREA-IDDLYAPLIMGC 322 +E I + + + + PH I+ + RE A + + Sbjct: 358 YENAIYPAATSRQLFQTITRLKSMKTISLTDTIPPHRMIQCSKHRELANPMTNAMVALAV 417 Query: 323 DIAGEGGDKTVVV-FRRG 339 D A G V R+G Sbjct: 418 DTAAAGYGALVFCGSRQG 435 >gi|319637995|ref|ZP_07992759.1| hypothetical protein HMPREF0604_00382 [Neisseria mucosa C102] gi|317400640|gb|EFV81297.1| hypothetical protein HMPREF0604_00382 [Neisseria mucosa C102] Length = 762 Score = 41.5 bits (95), Expect = 0.22, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 53/199 (26%), Gaps = 17/199 (8%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + H +F + G GKT + L +I + + + Sbjct: 247 EILDHAVEQAAQPQG-LFTLTV--PTGGGKTFTSMAFALEHAKRHGMRRVIYVIPFTSII 303 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS-GWYAELLEQSMGIDSKHYTITCRTYS-- 177 + AE K L + E S A + + ++ I T Sbjct: 304 EQNA-AEFRKAFGELGEQAVLEHHSTFDDGKLQNEATKDKLRLASENWDAPIVVTTAVQF 362 Query: 178 -----EERPDTFVGPHNTHGMAVFNDEASGTPDI----INKSILGFFTELNPNRFWIMTS 228 +R HN G + DEA P I ++I + + + Sbjct: 363 FESLFADRSSRCRKLHNIAGSVIILDEAQMLPLNLLLPIMQAIKELAQNYHCSVVMCTAT 422 Query: 229 NTR-RLNGWFYDIFNIPLE 246 + FY F E Sbjct: 423 QPAVQAENGFYRGFENVRE 441 >gi|313836721|gb|EFS74435.1| type III restriction enzyme, res subunit [Propionibacterium acnes HL037PA2] gi|314929873|gb|EFS93704.1| type III restriction enzyme, res subunit [Propionibacterium acnes HL044PA1] gi|314972300|gb|EFT16397.1| type III restriction enzyme, res subunit [Propionibacterium acnes HL037PA3] Length = 347 Score = 41.5 bits (95), Expect = 0.22, Method: Composition-based stats. Identities = 23/182 (12%), Positives = 51/182 (28%), Gaps = 14/182 (7%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 + + ++ N + ++ G+GKT ++ LI G I+ + Sbjct: 108 AKRLRYQYSAVQQALDPDN-LRPRILLADAVGLGKTIEIGMILSELIRRGRGERILIVCP 166 Query: 116 SE--TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173 Q++N +W+ + L ++ ++ + +D+ Sbjct: 167 RHVLEQMQNEMWSRFAIPFVRLDSVGLQRVKQKIPANRNPFSWYKRVIISMDTLKQDRFA 226 Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233 H AV DE+ ++ T I+ S T Sbjct: 227 -----------HDLHRHEWNAVVIDESHNVTGDTTQNNRLARTLAPNTDALILASATPHN 275 Query: 234 NG 235 Sbjct: 276 GN 277 >gi|313899662|ref|ZP_07833165.1| CRISPR-associated endonuclease Cas3-HD [Clostridium sp. HGF2] gi|312955277|gb|EFR36942.1| CRISPR-associated endonuclease Cas3-HD [Clostridium sp. HGF2] Length = 788 Score = 41.5 bits (95), Expect = 0.23, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 45/160 (28%), Gaps = 7/160 (4%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 E ++ C ++ +P I++ + G GKT + L II +A Sbjct: 248 ELRASISDQC-KAFSSHSPGIYRLS--CPTGSGKTLASLRYALHHAKKYHKKHIIYVAPF 304 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQ-SLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 +T L+ + L H + S + + + + + Sbjct: 305 KTILEQNAEVMKQFFNEDLVLEHHSNIIPSQYTDYDYYSSSWNKPVILTTAVRLFDVMF- 363 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 ++R H + DEA P Sbjct: 364 --KDRTTDVRRFHQLADSVLIIDEAQKIPVQTISMFNEMM 401 >gi|300721107|ref|YP_003710375.1| type I site-specific deoxyribonuclease HsdR [Xenorhabdus nematophila ATCC 19061] gi|297627592|emb|CBJ88111.1| Type I site-specific deoxyribonuclease HsdR [Xenorhabdus nematophila ATCC 19061] Length = 1029 Score = 41.5 bits (95), Expect = 0.23, Method: Composition-based stats. Identities = 20/188 (10%), Positives = 50/188 (26%), Gaps = 5/188 (2%) Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICI--ANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 +G GK+ W+ W+ P ++ + ++ V + + Sbjct: 277 QGSGKSLTMVWLAKWIRENVPNSRVLIVTDRTELDAQIEKVFTGVEENIYRTKSGADLIF 336 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 +P + + + +++ T E + + VF DE Sbjct: 337 NLNRPNPWLICSLVHKFGHRSEAEDDAATDEYIKELKKSLPSDFRAKGDLFVFVDECH-- 394 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + + P +I + T + + Y+ D +G+ Sbjct: 395 -RTQSGKLHDAMKSILPEAVFIGFTGTPLMKKDKKKSIEVFGSFIHTYKFDEAVSDGVIL 453 Query: 264 GFHEGIIS 271 Sbjct: 454 DLRYEARD 461 >gi|238919907|ref|YP_002933422.1| bacteriophage terminase large subunit [Edwardsiella ictaluri 93-146] gi|238869476|gb|ACR69187.1| putative bacteriophage terminase large subunit [Edwardsiella ictaluri 93-146] Length = 558 Score = 41.5 bits (95), Expect = 0.23, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 53/226 (23%), Gaps = 32/226 (14%) Query: 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCA---------ISAGRGIGKTTLNAWMMLWLIST 104 W+L+ + + V + I R +G +T +L Sbjct: 24 WRLDNLYQIVDEQGRLVPFRMRPAQRQLFMEMHEKNLILKARQLGFSTAIDLYLLDQALF 83 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 + +A + AE+ + +P H + H + + Sbjct: 84 SKNVKCGIVAQDKQAA-----AEIFRTKIEVPFDHLPGWLAGCFHAVKRHGGASGGYIEF 138 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224 + ++ + + P + G + Sbjct: 139 AHGSNIMVATSFRSGTVQRLHISEHGKI-------CAKYPAKAKEVRTGTLNAVAEGSIV 191 Query: 225 IMTSNTRRLNGWFYDIFNIPLE-----------DWKRYQIDTRTVE 259 + S + G FYD+ E D+K + Sbjct: 192 FIESTAEGVGGDFYDMSLRAQEMAQSRLPLSSQDYKFHFYAWWQDP 237 >gi|224539562|ref|ZP_03680101.1| hypothetical protein BACCELL_04467 [Bacteroides cellulosilyticus DSM 14838] gi|224518843|gb|EEF87948.1| hypothetical protein BACCELL_04467 [Bacteroides cellulosilyticus DSM 14838] Length = 667 Score = 41.5 bits (95), Expect = 0.23, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 80/267 (29%), Gaps = 25/267 (9%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRP-GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 + AG G GKT + + + +L+ +I+ + + + + +++ + RH Sbjct: 26 VIAGAGSGKTRVLTYKIAYLLENGYQPWNILALTFTNKAARE-MKERIARQVGDQRARHL 84 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + S+ +AE T + + D+ + DE Sbjct: 85 WMGTFHSIFLRILHAEAANI---------GFTSQFTIYDTADSKSLVRSIIKEMG-LDEK 134 Query: 201 SGTPDIINKSILGFFTELNPNRFWIM--TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 P S+ + + SN G + + RY R Sbjct: 135 VYKP----GSVQARISNAKNHLVSPAGYASNKEAYEGDCAAKMPAIRDIYHRYWDRCRQA 190 Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318 + +D D QF V+ + NY + ++ + D Sbjct: 191 DAMDFDDLLFYTFILFRDHPEVLARYQEQFRYILVDEYQDTNYAQHSIVLQLAKDHQHVC 250 Query: 319 IMGCDIAGEGGDKTVVVFRRGNIIEHI 345 ++ G D + RG I++I Sbjct: 251 VV-------GDDAQSIYSFRGADIDNI 270 >gi|116180300|ref|XP_001219999.1| hypothetical protein CHGG_00778 [Chaetomium globosum CBS 148.51] gi|121791807|sp|Q2HG76|MPH1_CHAGB RecName: Full=ATP-dependent DNA helicase MPH1 gi|88185075|gb|EAQ92543.1| hypothetical protein CHGG_00778 [Chaetomium globosum CBS 148.51] Length = 1134 Score = 41.5 bits (95), Expect = 0.23, Method: Composition-based stats. Identities = 30/214 (14%), Positives = 59/214 (27%), Gaps = 13/214 (6%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 ++ G+GKT + A +ML I+ +A ++ + A + ++ +P Sbjct: 202 NTLVALPTGLGKTFIAATIMLNYFRWTKRSKIVFVAPTKPLASQQVQACLG--IAGIPRS 259 Query: 139 HWFEMQ-SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + E + + +T +T + + P + + Sbjct: 260 QATLLTGETPPVLRQGEWE--------SKRLFFMTPQTLMNDLSKGYADP--KSIVLLVV 309 Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257 DEA + F I+ + I +I T Sbjct: 310 DEAHRATGDYAYVKVVEFIRRFSKSIRILALTATPGSTVEGVQDIIDNLGISHVEIRTEE 369 Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291 I H I D E+ G F + Sbjct: 370 SIDIRQYVHSRNIDTVTFDPSDEMHEVRGLFSKA 403 >gi|328907729|gb|EGG27493.1| putative helicase [Propionibacterium sp. P08] Length = 343 Score = 41.5 bits (95), Expect = 0.23, Method: Composition-based stats. Identities = 23/182 (12%), Positives = 51/182 (28%), Gaps = 14/182 (7%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 + + ++ N + ++ G+GKT ++ LI G I+ + Sbjct: 104 AKRLRYQYSAVQQALDPDN-LRPRILLADAVGLGKTIEIGMILSELIRRGRGERILIVCP 162 Query: 116 SE--TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173 Q++N +W+ + L ++ ++ + +D+ Sbjct: 163 RHVLEQMQNEMWSRFAIPFVRLDSVGLQRVKQKIPANRNPFSWYKRVIISMDTLKQDRFA 222 Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233 H AV DE+ ++ T I+ S T Sbjct: 223 -----------HDLHRHEWNAVVIDESHNVTGDTTQNNRLARTLAPNTDALILASATPHN 271 Query: 234 NG 235 Sbjct: 272 GN 273 >gi|308185825|ref|YP_003929956.1| ATP-dependent RNA helicase dbpA [Pantoea vagans C9-1] gi|308056335|gb|ADO08507.1| ATP-dependent RNA helicase dbpA [Pantoea vagans C9-1] Length = 460 Score = 41.5 bits (95), Expect = 0.23, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 57/223 (25%), Gaps = 22/223 (9%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR--------GIGKTTLNAWMMLWLI-STR 105 QL+ + + + V + AI GR G GKT +L I STR Sbjct: 14 QLDNLREMGYTSMTPVQAATLP----AILQGRDVRAQAKTGSGKTAAFGIGLLHHIDSTR 69 Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 + + + ++L F L G ++ + Sbjct: 70 FQTQALILCPTRELADQV--------GNVLRQLARFTRNIKVLTLCGGQPMSAQRDSLVH 121 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225 + + + DEA ++ + + E P Sbjct: 122 P-PHIVVGTPGRILDHINRENLKLDQLSTLVLDEADRMLEMGFLNDMETIIEATPASRQT 180 Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG 268 + + +G + D + ID F E Sbjct: 181 LLFSATWPDGITAISTRFQRDALSVVTEDVSELPSIDQQFFEA 223 >gi|304384818|ref|ZP_07367164.1| PBSX family phage terminase [Pediococcus acidilactici DSM 20284] gi|304329012|gb|EFL96232.1| PBSX family phage terminase [Pediococcus acidilactici DSM 20284] Length = 432 Score = 41.5 bits (95), Expect = 0.23, Method: Composition-based stats. Identities = 19/201 (9%), Positives = 49/201 (24%), Gaps = 16/201 (7%) Query: 87 GIGKTTLN-AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 GKT + A + L+ + + P + + A ++ + + Sbjct: 34 RAGKTAADDARLALFYLVS-PNETHLVSAYNQELA-----------YKLFIEGDGLGLAY 81 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 + S + + ID + ++ +V E + Sbjct: 82 IFDGVSHLRRDRGGDHLEIDLPSGKKKVYFKGGGKSNSANSIRGLSLGSVAYSEMNLLDK 141 Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265 T R+ + N + + F W + Sbjct: 142 EFIDESF-RRTAAAKIRYHLADLNPPAPHDPIIETFKEYGAHW--LHWTMSDNPVMSEQR 198 Query: 266 HEGIISRYGLDSDVARIEILG 286 + + + + + + LG Sbjct: 199 LKEMEEQLKRNPYRYKRDWLG 219 >gi|221130192|ref|XP_002154179.1| PREDICTED: similar to septin 9b [Hydra magnipapillata] Length = 402 Score = 41.5 bits (95), Expect = 0.23, Method: Composition-based stats. Identities = 20/153 (13%), Positives = 39/153 (25%), Gaps = 25/153 (16%) Query: 6 STDQKLEQELHEMLMHAEC------VLSFKNFVM----RFFPWGIK-GKPLEHFSQPHRW 54 + E+E+ A +F N ++ WG+K P++ + Sbjct: 48 PNFSETEKEIVNKKSEARSEKGMLSYNNFLNIMLETMGMTTQWGVKLKTPVDGYVGFDSI 107 Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + F + G+GK+TL + C Sbjct: 108 QEQL---------RLNALKRGFEFNIMVVGSAGLGKSTLIN-----TLFKTRAARASCTT 153 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147 + T K ++ L + Sbjct: 154 ETNTIPKTVEIKTITHVLEEKGVNLKLTVTDTP 186 >gi|332653904|ref|ZP_08419648.1| phage terminase large subunit (GpA) [Ruminococcaceae bacterium D16] gi|332516990|gb|EGJ46595.1| phage terminase large subunit (GpA) [Ruminococcaceae bacterium D16] Length = 640 Score = 41.5 bits (95), Expect = 0.23, Method: Composition-based stats. Identities = 30/269 (11%), Positives = 69/269 (25%), Gaps = 18/269 (6%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 W+ + ++ + + P + K + A +GK+ L ++ ++I PG I+ Sbjct: 51 PWRTKRTPYLEEPMRAFTD---PKVHKIVMVAASQVGKSELELNIIGYIIDQDPGS-ILY 106 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 + + + L + P + +H Sbjct: 107 VHPTIDDARKFS------RLRVAPMIRDSKPLKAKVHDVKAKDSGNTILQKSFPGGMLTL 160 Query: 173 --CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 + S + A D + T N + T Sbjct: 161 TGSNSASALASTPARYIIGDERDR-WATSAGTEGDPWALAEARQATFYNAKAVEVSTPTI 219 Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI---DSGFHEGIISRYGLDSDVARIEILGQ 287 + + + E W + I + F G S + + Sbjct: 220 KGNSNIETSFYQGTQERWCHRCPECGEYSEIVFDNIHFDPEAKRIRGKKSWSLKSGV--S 277 Query: 288 FPQQEVNNFIPHNYIEEAMSREAIDDLYA 316 + IP + + + ++ D+ A Sbjct: 278 WSCPACGCLIPEDVMRKQPAKWIADNPDA 306 >gi|167841454|ref|ZP_02468138.1| phage-related DNA maturase [Burkholderia thailandensis MSMB43] Length = 598 Score = 41.5 bits (95), Expect = 0.23, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 42/171 (24%), Gaps = 23/171 (13%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 E + + + A RG KTT+ A +W + P ++ I+ Sbjct: 43 EVQADIAEFLEYGPHY-------LMVQAQRGQAKTTICALFAVWCLIHDPKFRVLIISAG 95 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 TQ V ++M +G + + K + Sbjct: 96 GTQANEISTLIVRVIMTMDILGCL-----RPDRNAGDRTSVEAFDVHHTLKGLDKSPSVA 150 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227 G + D+ +S TE +T Sbjct: 151 CVGVTGNLQGKRAD---LLIADD--------IESAKNSLTEHQRQALLQLT 190 >gi|170086129|ref|XP_001874288.1| predicted protein [Laccaria bicolor S238N-H82] gi|164651840|gb|EDR16080.1| predicted protein [Laccaria bicolor S238N-H82] Length = 1307 Score = 41.5 bits (95), Expect = 0.23, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 51/157 (32%), Gaps = 12/157 (7%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 ++ G+GKT + +ML P ++ +A ++ + ++ Sbjct: 223 NTLVALPTGLGKTFIAGAVMLNFYRWFPEGKVVFVAPTKPLVAQ----QIMACHETCGI- 277 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 S+ +G + + + + +T +T + P + + D Sbjct: 278 ----PGGDSIELNGEVPKATRARHWREKRVFFMTPQTLINDLHTEICDP--LDVVLLVVD 331 Query: 199 EASGTP-DIINKSILGFFTELNPNRFWIMTSNTRRLN 234 EA D ++ F NP+ + + T N Sbjct: 332 EAHRATGDYAYNQVIRFLMAKNPHFRVLALTATPGNN 368 >gi|116493124|ref|YP_804859.1| superfamily II DNA/RNA helicase [Pediococcus pentosaceus ATCC 25745] gi|116103274|gb|ABJ68417.1| DNA or RNA helicase of superfamily II [Pediococcus pentosaceus ATCC 25745] Length = 950 Score = 41.5 bits (95), Expect = 0.23, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 68/228 (29%), Gaps = 32/228 (14%) Query: 9 QKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHS 68 Q + + + + V P + P+R Q ++A+ Sbjct: 174 QWQKAQPLNQKWIDQYAKFYSENVSLSSPTTPFQLENKSPLTPNRMQQAALKALINLRSE 233 Query: 69 NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128 + I + G GKT L A + + + + + E L+ Sbjct: 234 GQK-------RGLIISATGTGKTYLAA----FDVRNYRPRKFLFVVHREQILR------- 275 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188 + +++ P+ Y L + ID K+ T +T S RPD Sbjct: 276 ---------KALLSFKNVLGGPADDYGILAGGTKEIDRKYVFATIQTLS--RPDILNELK 324 Query: 189 NTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236 + DEA + I+ F P MT+ R + + Sbjct: 325 ANTFDYILIDEAHKAGAASYQKIINHF---KPEFLLGMTATPERTDDF 369 >gi|320168067|gb|EFW44966.1| hypothetical protein CAOG_02972 [Capsaspora owczarzaki ATCC 30864] Length = 1972 Score = 41.5 bits (95), Expect = 0.23, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 50/157 (31%), Gaps = 12/157 (7%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + G+GKT + A +M P ++ +A ++ ++ L A S Sbjct: 80 NTLVCLPTGLGKTFIAAVVMYNFYRWFPTGKVVFMAPTKPLVQQQLEACFSIM------- 132 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 Q+ ++ +G A+ + + +T + + D + V D Sbjct: 133 --GVPQNETVMMTGSKAKEYRRETWRCKRILFVTPQILQHDLADGVCNAR--DFVCVVVD 188 Query: 199 EASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 EA D ++ N + S T N Sbjct: 189 EAHKALGDYAYCQVIRHMVRTNRRFRVLALSATPGSN 225 >gi|124485198|ref|YP_001029814.1| hypothetical protein Mlab_0371 [Methanocorpusculum labreanum Z] gi|124362739|gb|ABN06547.1| DEAD/DEAH box helicase domain protein [Methanocorpusculum labreanum Z] Length = 656 Score = 41.5 bits (95), Expect = 0.23, Method: Composition-based stats. Identities = 24/232 (10%), Positives = 53/232 (22%), Gaps = 23/232 (9%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS-T 104 F +P Q + + A G GKT ++ + Sbjct: 23 MGFEEPTPIQAMAIPQILDGKD------------VTGQAQTGTGKTAAFGIPIIERLDPD 70 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 + + ++ + T E S+ + + L++ P + Q + Sbjct: 71 NKNVQALVLSPTRELAIQTA-EEFSRLMK--------YKKGLNVVPIYGGQPIERQLRAL 121 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224 + H DEA D+ + + P Sbjct: 122 KGTVQVVIGTPGRVIDHIKRGTLHLDSVTMFILDEADQMLDMGFREDIEDIFRDTPKDRQ 181 Query: 225 IMTSNTRRLNGWFYDIFNIPLE-DWKRYQIDTRTVEGIDSGFHEGIISRYGL 275 + + + + + TV I+ + E Sbjct: 182 TILFSATMPQPILDITRRFQRDPQFVKITRKELTVPQIEQTYIEVRERDKLE 233 >gi|309364348|emb|CAP24997.2| hypothetical protein CBG_04253 [Caenorhabditis briggsae AF16] Length = 2026 Score = 41.5 bits (95), Expect = 0.24, Method: Composition-based stats. Identities = 31/225 (13%), Positives = 56/225 (24%), Gaps = 31/225 (13%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 + F + Q + ++ S I A G GKT M L+ Sbjct: 1172 IYGFDYFNPIQAQVFFSLYKTDKSA-----------LIGAPTGSGKTLCAELAMFRLLQD 1220 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 PGM ++ IA ++ ++ V W + FE+ + Sbjct: 1221 HPGMKVVYIAPLKSLVRER----VDDW------KKKFEVGMGYRVVEVSGDVTPDPEELS 1270 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT-------- 216 S T + + + DE + + Sbjct: 1271 ASSILITTPEKWDGISRSWATREYVRRVGLIVLDEVHLLGVDRGAVLEAIVSRLKMITRR 1330 Query: 217 --ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 + + S G + IP E ++ R V Sbjct: 1331 SHTRDEPVRLLGLSTALANAGDVAEWLGIPDEACYNFRPSVRPVP 1375 >gi|295106980|emb|CBL04523.1| Phage terminase-like protein, large subunit [Gordonibacter pamelaeae 7-10-1-b] Length = 440 Score = 41.5 bits (95), Expect = 0.24, Method: Composition-based stats. Identities = 27/246 (10%), Positives = 54/246 (21%), Gaps = 25/246 (10%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 ++ R GK+ G ++ A+ + T + +F Sbjct: 28 LAVPRQNGKSLGTVQARSNYGMVALGEQVVYTAHLQKTATETFESIAG----------FF 77 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + + L + + + S G HG + DEA Sbjct: 78 TSRKMVGRVKAVREALGREQIVLKSGARIKFLARTR-------NGGRGQHGDLLIFDEAQ 130 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLN--GWFYDIFNIPLEDWKRYQIDTRTVE 259 D S L + + I + G + + Sbjct: 131 ELDDTQQSSFLFAISASPNPQT-IYAGTPPDEDSPGTVFKRIRAAALGGRTRTTSWDEWS 189 Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYAP 317 + + + I I P + + A R D Sbjct: 190 VPEIPEDPRDRRIWAATNPSLGITIQ---PSTIETEIEQMDAAKLARERFGWWAPDTGVE 246 Query: 318 LIMGCD 323 ++ D Sbjct: 247 RVVDAD 252 >gi|254565621|ref|XP_002489921.1| Putative RNA helicase related to Ski2p, involved in translation inhibition of non-poly(A) mRNAs [Pichia pastoris GS115] gi|238029717|emb|CAY67640.1| Putative RNA helicase related to Ski2p, involved in translation inhibition of non-poly(A) mRNAs [Pichia pastoris GS115] gi|328350332|emb|CCA36732.1| pre-mRNA-splicing helicase BRR2 [Pichia pastoris CBS 7435] Length = 1942 Score = 41.5 bits (95), Expect = 0.24, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 35/124 (28%), Gaps = 15/124 (12%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLIS-TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 I + G GKT + A + +W PG ++ IA + ++ V W + L Sbjct: 1139 NVFIGSPTGSGKT-VVAELAIWHAFKEFPGSKVVYIAPMKALVRER----VDDWRARLTG 1193 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 E+ SL + E + + + Sbjct: 1194 NKVVELTGDSLPEAKEIREANIVITTPEKFDGISRNWQTRKFV---------QQVSLIIM 1244 Query: 198 DEAS 201 DE Sbjct: 1245 DEIH 1248 >gi|227821702|ref|YP_002825672.1| DNA packaging protein Gp2 [Sinorhizobium fredii NGR234] gi|227340701|gb|ACP24919.1| DNA packaging protein Gp2 [Sinorhizobium fredii NGR234] Length = 416 Score = 41.5 bits (95), Expect = 0.24, Method: Composition-based stats. Identities = 37/264 (14%), Positives = 63/264 (23%), Gaps = 32/264 (12%) Query: 83 SAGRGIGKTTLNAWMML---------WLISTRPGMSIICIA--NSETQLKNTLWAEV--- 128 AG +GKT A W R I+ +A S ++ + + Sbjct: 1 MAGNQLGKTLAGAAEAAMHLTGRYPDWWDGRRFDKPIVMLAGSESYELTRDGVQRLMVGP 60 Query: 129 ----SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184 W + + SG L ++ S +I E+ + Sbjct: 61 PMNEEDWGTGCIPKAAIVGTPTRR--SGVSGALDSVTVRHVSGGVSILLFKAYEQGRGKW 118 Query: 185 VGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN-I 243 V+ DE P+ + G +T + + Sbjct: 119 Q---ANTVDYVWFDEEP--PEDVY--FEGITRTNATRGSIAVTFTPLKGMSTVVARYILE 171 Query: 244 PLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303 D + + E + II Y AR + P P E Sbjct: 172 KSPDREVITMTIDDAEHYTPEERQRIIDSYPAHEREARTKG---VPSLGSGRIFPVAE-E 227 Query: 304 EAMSREAIDDLYAPLIMGCDIAGE 327 + I G D + Sbjct: 228 SITIAPFEIPKHWVQIGGLDFGWD 251 >gi|118374210|ref|XP_001020295.1| UvrD/REP helicase family protein [Tetrahymena thermophila] gi|89302062|gb|EAS00050.1| UvrD/REP helicase family protein [Tetrahymena thermophila SB210] Length = 745 Score = 41.5 bits (95), Expect = 0.24, Method: Composition-based stats. Identities = 29/269 (10%), Positives = 68/269 (25%), Gaps = 21/269 (7%) Query: 66 CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW 125 ++A G GKT + I S ICI Q N + Sbjct: 15 QQQKEFIYASKRRDIKVTACAGSGKTQCVLMYVKEAIDEGFDPSAICITTFNIQASNDMK 74 Query: 126 AEVSKWLS-------------MLPHRHWFEMQ-SLSLHPSGWYAELLEQSMGIDSKHYTI 171 + + L + + +Q + + +E+ + ID Sbjct: 75 KRAVQLIGKDKADKIEITNIDKLITKLFNSIQRAKKQKDNEKQKNEIEKELLIDITLVEK 134 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 + Y + + + + DE + + ++ + Sbjct: 135 QSQVYEDLQDLSLSKEIFEKYKIIIFDEFQDINQLQYDIF--MLFKKIGESILVVVGD-D 191 Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291 N + + N K + R + I ++ + +I + Sbjct: 192 AQNIYEFRGSNYEFLRSKVIEDVNRENKRIYGSEDYTMLDIKLTTNFRCSSKIT----KF 247 Query: 292 EVNNFIPHNYIEEAMSREAIDDLYAPLIM 320 + N I++ + Y + + Sbjct: 248 ANDIIKSFNIIQQNTMQSYEGYSYEDIAI 276 >gi|268530400|ref|XP_002630326.1| Hypothetical protein CBG04253 [Caenorhabditis briggsae] Length = 1794 Score = 41.5 bits (95), Expect = 0.24, Method: Composition-based stats. Identities = 31/225 (13%), Positives = 56/225 (24%), Gaps = 31/225 (13%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 + F + Q + ++ S I A G GKT M L+ Sbjct: 953 IYGFDYFNPIQAQVFFSLYKTDKSA-----------LIGAPTGSGKTLCAELAMFRLLQD 1001 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 PGM ++ IA ++ ++ V W + FE+ + Sbjct: 1002 HPGMKVVYIAPLKSLVRER----VDDW------KKKFEVGMGYRVVEVSGDVTPDPEELS 1051 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT-------- 216 S T + + + DE + + Sbjct: 1052 ASSILITTPEKWDGISRSWATREYVRRVGLIVLDEVHLLGVDRGAVLEAIVSRLKMITRR 1111 Query: 217 --ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 + + S G + IP E ++ R V Sbjct: 1112 SHTRDEPVRLLGLSTALANAGDVAEWLGIPDEACYNFRPSVRPVP 1156 >gi|316983443|gb|ADU76211.1| polyprotein [Dengue virus 3] Length = 2808 Score = 41.5 bits (95), Expect = 0.24, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 47/185 (25%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1628 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1681 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + + T P + + DEA D Sbjct: 1682 ------------EHTGREIADLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1723 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1724 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1780 Query: 264 GFHEG 268 + Sbjct: 1781 EWITD 1785 >gi|319425286|gb|ADV53360.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200] Length = 419 Score = 41.5 bits (95), Expect = 0.24, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 48/233 (20%), Gaps = 22/233 (9%) Query: 57 EFMEAVDVH----CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM---- 108 E ++A+ H A G GKT L + P Sbjct: 14 ESLKAMGHHSPTTIQQETIPYALEQRDILARAPTGTGKTASFLLPTLQHLIDFPRRFSGQ 73 Query: 109 -SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 I+ + + E++ + H Q L + Q + Sbjct: 74 ARILILTPT---------RELASQIHRYAC-HLATDQGLDIAIITGGVPYAPQEEALAGN 123 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227 + + DEA D+ S++ R M Sbjct: 124 VDILVATPGRLMEYLDKGKFSAEEVDILIIDEADRMLDMGFSSVVQAIALEAQGRKQNML 183 Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280 + G L+D + + I Sbjct: 184 FSATLEGGGVQRFAREVLKDPIEIDV---DAPRSEKAKIHQWIHLADDKEHKF 233 >gi|50302989|ref|XP_451432.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49640563|emb|CAH03020.1| KLLA0A09889p [Kluyveromyces lactis] Length = 1960 Score = 41.5 bits (95), Expect = 0.24, Method: Composition-based stats. Identities = 17/121 (14%), Positives = 38/121 (31%), Gaps = 12/121 (9%) Query: 82 ISAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 + + G GKT + A + +W PG ++ IA + ++ V+ W + Sbjct: 1155 VGSPTGSGKT-VVAELAIWHAFRDYPGSKVVYIAPMKALVRER----VNDWRKRI----- 1204 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + + + Q + D+ T + + + + DE Sbjct: 1205 TPVTGDRIVELTGDSVPDPQDIK-DATIVITTPEKFDGISRNWQTRKFVQNVSLIIMDEI 1263 Query: 201 S 201 Sbjct: 1264 H 1264 >gi|78187155|ref|YP_375198.1| CRISPR-associated helicase Cas3 family protein protein [Chlorobium luteolum DSM 273] gi|78167057|gb|ABB24155.1| CRISPR-associated helicase, Cas3 family [Chlorobium luteolum DSM 273] Length = 692 Score = 41.5 bits (95), Expect = 0.24, Method: Composition-based stats. Identities = 37/267 (13%), Positives = 71/267 (26%), Gaps = 19/267 (7%) Query: 22 AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81 +E +F +F+ R G K P+ + + P +F Sbjct: 158 SELKDTFNHFMARKQA-GAKDSPVNRA-----------RNLILEECRTNAALEPGLFSLT 205 Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + G GKT + L II + ++ T + + H Sbjct: 206 V--PTGGGKTLCSMAFALEHAIRFQKKRIIVAIPYTSIIEQTADQYRQIFGNDAVLEHHS 263 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + A + I + + + + + HN + DEA Sbjct: 264 NLDPEKGSGKYRLASENWDAPIIVTTNVQLFESLF-AAKSSACRKLHNIVNSVIVLDEAQ 322 Query: 202 GTPDIINK---SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 P + S+L E + T+ L+G N+ + + Sbjct: 323 MLPTGYLQPVVSVLELLAEHFRTSIVLCTATQPVLSGRVGTGQNVLKGFKNDGVRELMSD 382 Query: 259 EGIDSGFHEGIISRYGLDSDVARIEIL 285 + + D+D R E Sbjct: 383 PDNLFKVFQRVTVNMLGDADE-RHEWD 408 >gi|308476267|ref|XP_003100350.1| hypothetical protein CRE_22485 [Caenorhabditis remanei] gi|308265092|gb|EFP09045.1| hypothetical protein CRE_22485 [Caenorhabditis remanei] Length = 1870 Score = 41.5 bits (95), Expect = 0.24, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 58/222 (26%), Gaps = 31/222 (13%) Query: 48 FSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107 F + Q + ++ S + A G GKT M L+ PG Sbjct: 1030 FDYFNPIQAQVFYSLYKTDKSA-----------LVGAPTGSGKTLCAELAMFRLLQDHPG 1078 Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 M ++ IA ++ ++ V W + + + +S + EL S+ Sbjct: 1079 MKVVYIAPLKSLVRER----VDDWKQKFENGMGYRVVEVSGDVTPDPQELQASSI----- 1129 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT----------E 217 T + + + DE + + Sbjct: 1130 -LITTPEKWDGISRSWATREYVRRVGLIVLDEVHLLGVDRGAVLEAIVSRLKMITRRSHT 1188 Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 + S G + IP E ++ R V Sbjct: 1189 REEPVRLLGLSTALANAGDVAEWLGIPDEACFNFRPSVRPVP 1230 >gi|311112398|ref|YP_003983620.1| hypothetical protein HMPREF0733_10728 [Rothia dentocariosa ATCC 17931] gi|310943892|gb|ADP40186.1| conserved hypothetical protein [Rothia dentocariosa ATCC 17931] Length = 907 Score = 41.5 bits (95), Expect = 0.24, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 46/163 (28%), Gaps = 21/163 (12%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL------- 132 A+ G GKT L + ++ L++ G + +A S ++N L A + + L Sbjct: 501 VAVQGPPGSGKTFLGSQVIARLVAA--GAKVGVVAQSHAVVENMLTACLERNLFPADRVM 558 Query: 133 -----SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187 S LP W E+ L + L + + Sbjct: 559 RAKGKSQLPDYPWVEVSDKDLTALLDKSSGLSSE-KSGTGTSPGVLFGGTAWDFANPNRI 617 Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 + DEA + R ++ + Sbjct: 618 PEGSLDLLVIDEAGQFS------LANTLAVGRAARNLLLLGDP 654 >gi|260905995|ref|ZP_05914317.1| TrwC relaxase [Brevibacterium linens BL2] Length = 1152 Score = 41.5 bits (95), Expect = 0.24, Method: Composition-based stats. Identities = 25/188 (13%), Positives = 48/188 (25%), Gaps = 19/188 (10%) Query: 40 IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99 P +P +L +D + G GKTT+ A + Sbjct: 426 EAQAPNREPPRPDLTELAAEHGLDAGQAEAAAAVASRDPLVVVEGAAGSGKTTMLATAI- 484 Query: 100 WLISTRPGMSIICIANSET--QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 G S+ + ++ Q+ + ++ L + H F + + Sbjct: 485 -EALDHDGRSVRVVTPTKKAAQVAAETLKVPADSVAALVYAHGFRWNDDGVWTRLNPGDA 543 Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217 + + R ER V DEA ++L E Sbjct: 544 DPATGQTYTGPR-KGARLVRGER--------------VIVDEAGMLDQDTALALLTIIRE 588 Query: 218 LNPNRFWI 225 + + Sbjct: 589 AKASVALV 596 >gi|17546658|ref|NP_520060.1| terminase (ATPase subunit) related protein [Ralstonia solanacearum GMI1000] gi|17428957|emb|CAD15641.1| probable terminase (atpase subunit) related protein [Ralstonia solanacearum GMI1000] Length = 506 Score = 41.5 bits (95), Expect = 0.24, Method: Composition-based stats. Identities = 37/347 (10%), Positives = 80/347 (23%), Gaps = 35/347 (10%) Query: 39 GIKGKPLEHFSQPHRWQLEFMEA----VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN 94 G + K + P Q + ++A + + + + + R IG T Sbjct: 124 GPRSKLERNAISPEE-QTQLLKAFRDSMFDYQRVWYEAGQVERIRNLLKS-RQIGATWYF 181 Query: 95 AWMMLWLISTRPGMSIICIANSET----QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150 A T G I A+ + +A+ + + + + Sbjct: 182 AREAFIDALTTGGNQIFLSASKAQAHVFKQYIVQFAKDAAGVELKGDPMVLPNGATLYFL 241 Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS 210 + Y R + + + H + S Sbjct: 242 GTNARTAQSYHGNLYFDEYFWVPRFQELRKVASGMAIHKHWRQT-YFSTPSSLSHEAYPF 300 Query: 211 ILGFFTELNP-NRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI 269 G I + D W++ + G + F Sbjct: 301 WSGALFNRGKAKDKQIKL---DVSHAALRDGLRCADGQWRQIVTVEDALRGGCNLFDLDQ 357 Query: 270 ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY-----------APL 318 + + + ++ F + + P + + M P+ Sbjct: 358 LRLEYSEPE-FANLLMCAFID-DNASVFPLSMLMRGMVDSWEAWEDFRPFAPRPFGNRPV 415 Query: 319 IMGCDIAGEGGDKTVVVFRRGN-------IIEHIFDWSAKLIQETNQ 358 +G D G GGD +V + + +E Sbjct: 416 WVGYDPNGGGGDSAALVVVAPPLVPGGKFRVLERHQFRGIDYEEQAG 462 >gi|326800862|ref|YP_004318681.1| hypothetical protein Sph21_3473 [Sphingobacterium sp. 21] gi|326551626|gb|ADZ80011.1| hypothetical protein Sph21_3473 [Sphingobacterium sp. 21] Length = 543 Score = 41.5 bits (95), Expect = 0.24, Method: Composition-based stats. Identities = 26/208 (12%), Positives = 46/208 (22%), Gaps = 10/208 (4%) Query: 85 GRGIGKTTL-NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP---HRHW 140 GRG GKT A + P + + + QL + + K L + H+ Sbjct: 26 GRGTGKTQGPIAHRSTSFANKMPRGATGIVGKTYMQLLDRTLPPLLKAWETLGYYENIHY 85 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + + + + D + + DEA Sbjct: 86 WVKTRPQDKLNIPKPLYKVLHPEYS--IFWWNGHVFHLISQDRPGLANGKTLDNIICDEA 143 Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-NIPLEDWKRYQIDTRTVE 259 + N F + + Y P W + + Sbjct: 144 RFLNHQRYTDDIAPINRGNLEYFSHL---PEHHSVTMYSDMPRDPKGKWLLEKKAQMDSK 200 Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQ 287 GI + GQ Sbjct: 201 GIAEIAFMQYEQNKIKQQMLLPNLTDGQ 228 >gi|115613179|ref|XP_781239.2| PREDICTED: similar to Fanconi anemia complementation group M [Strongylocentrotus purpuratus] gi|115925565|ref|XP_001193687.1| PREDICTED: similar to Fanconi anemia complementation group M [Strongylocentrotus purpuratus] Length = 2463 Score = 41.5 bits (95), Expect = 0.24, Method: Composition-based stats. Identities = 18/162 (11%), Positives = 46/162 (28%), Gaps = 12/162 (7%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 ++ G+GKT + A +M P I+ +A ++ ++ ++ + Sbjct: 71 QALFKNTLVTLPTGLGKTFIAAVVMYNFYRWYPRGKIVFMAPTKP----LVFQQIEACFN 126 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 ++ ++ + + +T P T Sbjct: 127 IMGIPQEDMVEMTGNMHPPERKKSWQVQRVFFLTPQVMTNDLSRRACPAT-------DVK 179 Query: 194 AVFNDEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 V DEA + ++ ++ + S T + Sbjct: 180 CVIVDEAHKALGNHAYCQVVRELSKYTSQFRVLALSATPGGD 221 >gi|83309455|ref|YP_419719.1| superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1] gi|82944296|dbj|BAE49160.1| DNA or RNA helicase of superfamily II [Magnetospirillum magneticum AMB-1] Length = 523 Score = 41.5 bits (95), Expect = 0.24, Method: Composition-based stats. Identities = 24/187 (12%), Positives = 48/187 (25%), Gaps = 32/187 (17%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q + A+ + + I +AG GK + + + ++ P I+ Sbjct: 5 RPYQQAALTAIYDYFGRKSGHPLIVIP----TAG---GKALVLSAFIKEVLENWPDQRIL 57 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + + + + L P D + Sbjct: 58 VVTHVRELIAQNYAELIG------------------LWPDAPAGIYSAGLGKRDLGARIL 99 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP---DIINKSILGFFTELNPNRFWIMTS 228 S + + V DEA P D + + L +NP+ I + Sbjct: 100 FAGIQSIHKRAYDI----QQCDLVLIDEAHLIPCASDTMYRRFLDTLARINPHLKVIGFT 155 Query: 229 NTRRLNG 235 T Sbjct: 156 ATPYRLD 162 >gi|157737907|ref|YP_001490591.1| phage uncharacterized protein [Arcobacter butzleri RM4018] gi|157699761|gb|ABV67921.1| phage uncharacterized protein [Arcobacter butzleri RM4018] Length = 573 Score = 41.1 bits (94), Expect = 0.25, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 55/193 (28%), Gaps = 24/193 (12%) Query: 22 AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81 + F F +FP + Q E +E + ++ P K A Sbjct: 69 EKQKSDFHYFRRTYFP------HYYSLEGKSKLQDE-LETIYYKIIDDLK---PMGLKFA 118 Query: 82 ISAGRGIGKTTLNAWMM-LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 I+A RG GK+T + +W I I +++ + + A ++ + Sbjct: 119 IAAPRGFGKSTDVSIAFPIWCIVNNYKHFITLFSDAIELAETLVEAIKAELEENERLKQD 178 Query: 141 F--EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP--------DTFVGPHN- 189 F + G + + + RP + + Sbjct: 179 FSNACGIGKVWKIGEIVTNNNIKVKAYGSGKRVRGVKHGTFRPDLAIIDDLENDTNVRSR 238 Query: 190 --THGMAVFNDEA 200 + + DEA Sbjct: 239 TQRDKLEDWLDEA 251 >gi|255656171|ref|ZP_05401580.1| ATP-dependent RNA helicase [Clostridium difficile QCD-23m63] Length = 497 Score = 41.1 bits (94), Expect = 0.25, Method: Composition-based stats. Identities = 20/235 (8%), Positives = 53/235 (22%), Gaps = 13/235 (5%) Query: 60 EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-SIICIANSET 118 + V + + G GKT A + I+ + + + Sbjct: 23 YNIPSRVQIEVIPKLLNGQNLVVKSKTGSGKTASFAIPLCENINVEYNNIQALIVVPTRE 82 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 E+S + R + + + + + Sbjct: 83 LALQV-KDEISSIGRLRKVRCSAIFGKQPIKEQIA---------ELKQRVHIVVATPGRI 132 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNT-RRLNGW 236 + + DEA + + L + + S T + Sbjct: 133 IDHINKGTIKLENIKYLIIDEADKMFNKGFVEQMEKILLNLPKEKIVGLFSATIDEEIKY 192 Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291 + + + + T + + I + + + I + P+ Sbjct: 193 ICEKYIPDYSVINIEENKSDTNQRTRQIDDKIIKTNEREKYILLKELIYSENPKS 247 >gi|194472054|ref|ZP_03078038.1| large subunit terminase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205358723|ref|ZP_02658709.2| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194458418|gb|EDX47257.1| large subunit terminase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205332242|gb|EDZ19006.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 570 Score = 41.1 bits (94), Expect = 0.25, Method: Composition-based stats. Identities = 25/242 (10%), Positives = 53/242 (21%), Gaps = 31/242 (12%) Query: 5 ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV 64 +S + EQ L + + + + + + L F Q + + Sbjct: 15 LSGMSEAEQRLFILTKLS----NPWWRLNHLYTVQNEKGELVTFRM-RPAQRQLFRNMHN 69 Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124 K I R +G +T +L + +A + Sbjct: 70 --------------KNIILKARQLGFSTAIDIYLLDQALFTAHLKCGIVAQDKQAASEIF 115 Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184 +++ LP + ++ Sbjct: 116 RTKIAVPFDNLPPWLRASFTVAERRSGASG-----GYILFGHGSSIQVATSFRSGTVQRL 170 Query: 185 VGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244 + + P + G + S + G FYD+ N Sbjct: 171 HISEHGKI-------CAKYPAKAKELRTGTLNAVADECIIFDESTAEGVGGDFYDMSNRA 223 Query: 245 LE 246 E Sbjct: 224 QE 225 >gi|254038860|ref|ZP_04872912.1| conserved hypothetical protein [Escherichia sp. 1_1_43] gi|226838825|gb|EEH70852.1| conserved hypothetical protein [Escherichia sp. 1_1_43] Length = 623 Score = 41.1 bits (94), Expect = 0.25, Method: Composition-based stats. Identities = 21/175 (12%), Positives = 45/175 (25%), Gaps = 9/175 (5%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 ++ + S+P + + G GK+ L + ++ I Sbjct: 21 QIEAYIKIREFFSDPEHREALVILPTGTGKSGLISIA----PYGVSQKRVLIITPGLVT- 75 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 K+++ + S + Y + S + S R Sbjct: 76 KDSIRKTQEVLEDNFWINYDIVFSSKDIPVVSEYTPDISSEHLEQSHIIFSNIQRISGNR 135 Query: 181 PDTF-VGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 + DEA P + L +F+ + +T R + Sbjct: 136 KSALINRVPEDFFDFIIVDEAHHAPAQSWRDALKYFS---KAKVLHVTGTPYRGD 187 >gi|195328224|ref|XP_002030816.1| GM24369 [Drosophila sechellia] gi|194119759|gb|EDW41802.1| GM24369 [Drosophila sechellia] Length = 687 Score = 41.1 bits (94), Expect = 0.25, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 42/145 (28%), Gaps = 12/145 (8%) Query: 72 NSNPTIFK-CAISAGRGIGKTTLNAWMMLWLISTRPGMS-----IICIANSETQLKNTLW 125 P + +SA G GKT A ++ L+S R ++ +A Q+ + Sbjct: 177 KPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVDCKVRALVVLPVAELALQVYRVIS 236 Query: 126 AEVSKW-LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184 A SK L +++ Y +T + Sbjct: 237 ALCSKTDLEACLLSKQHKLEDEQEKLVEQYKGKY-----YSKADIVVTTPGRLVDHLHAT 291 Query: 185 VGPHNTHGMAVFNDEASGTPDIINK 209 G + DEA D + + Sbjct: 292 KGFCLKSLKFLIIDEADRIMDAVFQ 316 >gi|148951|gb|AAC36867.1| DNA helicase II [Haemophilus influenzae] gi|739972|prf||2004269A DNA helicase II Length = 727 Score = 41.1 bits (94), Expect = 0.25, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 81/302 (26%), Gaps = 29/302 (9%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIA 114 E ++ ++ V + AG G GKT + + WLI+ SI+ + Sbjct: 6 ELLDGLNDKQREAVAAPLGNH---LVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 62 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 + S H+ + + +G+ + Sbjct: 63 FTNKAAAEMRHRIQSTLAKHAQHQLFGMWIGTFHSIARRLLRAHHLDVGLPQDFQILDSE 122 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 + HN DE + P + + + Sbjct: 123 -DQLRLIKRLLKLHN-------FDEKAF-PPKQACWYINNKKDEGLR--------PNDIE 165 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294 + ++ ++ YQ +D + + +F V+ Sbjct: 166 DFNDRQEREWIKIYQIYQDTCDRAGLVDFAELLIRVYELFEKKPLILQRYQQRFQHILVD 225 Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354 F N I+ + + +++ D D++ + RG IE+I + Sbjct: 226 EFQDTNKIQYK-WIKFLPGKTGQVMIVGD-----DDQS-IYGWRGAQIENIQKFLKDFKA 278 Query: 355 ET 356 ET Sbjct: 279 ET 280 >gi|193676308|ref|XP_001946967.1| PREDICTED: activating signal cointegrator 1 complex subunit 3 [Acyrthosiphon pisum] Length = 2156 Score = 41.1 bits (94), Expect = 0.25, Method: Composition-based stats. Identities = 17/173 (9%), Positives = 43/173 (24%), Gaps = 21/173 (12%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L F+ + Q + + + + A G GKT M + + Sbjct: 1323 LYGFTHFNPIQTQIFHCLYHTDN-----------NVLLGAPTGSGKTIAAEIAMFRVFNE 1371 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 +P ++ IA + ++ + + L ++ + Sbjct: 1372 QPDAKVVYIAPLKALVRERMKDWKIRLEEKLKKSVVELTGDVTPDIRA---ISNSSVIVT 1428 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217 + + R++ V DE + + + Sbjct: 1429 TPEKWDGVSRSWQTRNYV-------RQVALVVLDEVHLLGEDRGPVLEIIISR 1474 >gi|254360774|ref|ZP_04976922.1| possible helicase [Mannheimia haemolytica PHL213] gi|153091344|gb|EDN73318.1| possible helicase [Mannheimia haemolytica PHL213] Length = 762 Score = 41.1 bits (94), Expect = 0.25, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 49/179 (27%), Gaps = 14/179 (7%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 +++ G GKT + L II + + ++ AE K L Sbjct: 264 SLTVPTGGGKTFTSMAFALEHAKQYGLCRIIYVIPFTSIIEQNA-AEFRKAFGELGTEAV 322 Query: 141 FEMQSLSLHPSGW-YAELLEQSMGIDSKHYTITCRTYS-------EERPDTFVGPHNTHG 192 E S H S + + + ++ + T +R HN G Sbjct: 323 LEHHSTFDHDSLPDKSSRDKLKLASENWDTPVVVTTAVQFFESLFADRSSRCRKLHNIVG 382 Query: 193 MAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTR-RLNGWFYDIFNIPLE 246 + DEA P I +I + + FY F E Sbjct: 383 SVIILDEAQMLPLNLLRPIMAAIDELARNYQCSVVLCTATQPAIHQANGFYKGFENVRE 441 >gi|157877576|ref|XP_001687105.1| helicase [Leishmania major strain Friedlin] gi|68130180|emb|CAJ09491.1| putative helicase [Leishmania major strain Friedlin] Length = 1285 Score = 41.1 bits (94), Expect = 0.25, Method: Composition-based stats. Identities = 31/243 (12%), Positives = 64/243 (26%), Gaps = 24/243 (9%) Query: 43 KPLEHFSQP-HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101 E +P +Q + + +N+N G+GKT ++ + Sbjct: 255 LDTEGGQRPLRHYQRSALRWMVHLYENNLNGILADEM--------GLGKTVQTIALLCYF 306 Query: 102 ISTRPGMSI-ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 R + + + L AE+ +W L + + Sbjct: 307 AEYRNDWGPHLIVVPTTVVLN--WKAELERWSPGLKVLTYIGSTKERHQLRKGWT----- 359 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220 S+ C T + DEA + +L Sbjct: 360 -----SEDAFHVCVTSYNLVVQDRKVFRRRPWGFLVLDEAHHVKN-FMSLKWQSLFDLQA 413 Query: 221 NRFWIMTSNT-RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279 ++T + + +F+ L ++ + E + E I R L+ + Sbjct: 414 EYRLLLTGTPLQNSIMELWSLFHFLLPFASAFRSNAEFKEWFSNPMDEMITGRSTLNEAI 473 Query: 280 ARI 282 R Sbjct: 474 VRR 476 >gi|332827709|gb|EGK00444.1| hypothetical protein HMPREF9455_03087 [Dysgonomonas gadei ATCC BAA-286] Length = 589 Score = 41.1 bits (94), Expect = 0.25, Method: Composition-based stats. Identities = 25/225 (11%), Positives = 53/225 (23%), Gaps = 26/225 (11%) Query: 85 GRGIGKTTLNAWMMLWLISTR-PGMSIICIANSETQLKNTLWAEV-SKWLSMLPHRHWFE 142 GRG GKTT + + PG ++ A + + + + + +L +FE Sbjct: 36 GRGSGKTTHILAPRVDRVQNDMPGALVVLAAATYKSILDNIVPGILEYFLEKYQRGVYFE 95 Query: 143 MQSLSLHPSG--------WYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 G W +E+ + D + Sbjct: 96 FGKKPPEHFGVATHQHPNWSRNEIEKITDFKHTITFVNGTVIKFVSCDRPESMLGLNAAH 155 Query: 195 VFNDEASGTPDIIN-KSILGFFTELNPNR-----FWIMTS---NTRRLNGWFYDIFNIPL 245 +F DE P+ + I+ + +T D + Sbjct: 156 LFIDEMIRIPEEKFLERIMPALRADRSKFGHSHYYMGITGFSSTPNFETD--EDWWTKNE 213 Query: 246 EDWK-----RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285 +D + + + + + Sbjct: 214 KDHNQPLMDCILEIAYEADLRMGKLLVARAEADMEEVNKLQRFVD 258 >gi|115901674|ref|XP_782047.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115931835|ref|XP_001181037.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 960 Score = 41.1 bits (94), Expect = 0.25, Method: Composition-based stats. Identities = 18/150 (12%), Positives = 45/150 (30%), Gaps = 15/150 (10%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + + S +++A RG GK+ + + +I A Sbjct: 260 QAKALLKFVESISEKTLRST-----VSMTAARGRGKSAAL-GLAIATAVAFGYSNIFVTA 313 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 S ++ L+ + K L ++ + + + + ++ ++ + + Sbjct: 314 PSPENIRT-LFEFIFKGFDGLDYQEHLDYELVQSTNPEFNKAVIRVNIFREHRQTIQYIH 372 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + V DEA+ P Sbjct: 373 PGDAHKLSQAE--------LVVIDEAAAIP 394 >gi|291164759|gb|ADD80789.1| TerL [Rhodococcus phage ReqiDocB7] Length = 660 Score = 41.1 bits (94), Expect = 0.26, Method: Composition-based stats. Identities = 28/265 (10%), Positives = 68/265 (25%), Gaps = 32/265 (12%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAIS-AGRGIGKTTLNAW----MMLWLISTRPGMSIIC 112 M A+ ++ + ++ + A+ G GIGKTT + M+ W+ + Sbjct: 51 VMAALIEIFGDKIDPNWISVKRKAVMTGGIGIGKTTFASIVLPYMVHWVYCLKDPQDFFG 110 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 +A + + +L F + S W+ + + Sbjct: 111 LAPGSKIAFMMMSTSEKQATEVL-----FGDVKARVENSPWFERRCPYDPKFEKQLRFAK 165 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASG--------TPDIINKSILGFFTE------- 217 + + + DE + +I Sbjct: 166 KNLWILPGGSEETRFEGYNILGGVIDEGDSHKKTARKDYAEEGYDTIHSRIESRFMDHKA 225 Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFN--IPLEDWKRYQIDTRTVEGI-----DSGFHEGII 270 I+ T+ G+ ++N + D ++ G + + Sbjct: 226 GKFKGILILIGQTKSATGFMRRMYNEFMKEPDAAAIRMSIWESYGWHRYTENPDDEKNYR 285 Query: 271 SRYGLDSDVARIEILGQFPQQEVNN 295 S V + +++ + Sbjct: 286 ETAPRKSFVYDVMRKEIIKKEDADA 310 >gi|156044530|ref|XP_001588821.1| hypothetical protein SS1G_10369 [Sclerotinia sclerotiorum 1980] gi|154694757|gb|EDN94495.1| hypothetical protein SS1G_10369 [Sclerotinia sclerotiorum 1980 UF-70] Length = 1515 Score = 41.1 bits (94), Expect = 0.26, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 45/152 (29%), Gaps = 21/152 (13%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI-STRPGMS 109 P +QLE +E ++ G GKT + +L + P Sbjct: 107 PRTYQLEMLEE-------------SLKGNIIVAMDTGSGKTHVAVLRILAELERMEPDKL 153 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I +A + L + +++L + ++ S W + ++ D K Sbjct: 154 IWFLAPTVA-----LCTQHNEYLQLNISSVLVKLLVGSDGVDRWTEQRQWDAILKDVKIA 208 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + + F + DEA Sbjct: 209 VSPYQVLLDALAHGF--VRMERLSLIIFDEAH 238 >gi|22537994|ref|NP_688845.1| prophage LambdaSa2, terminase large subunit [Streptococcus agalactiae 2603V/R] gi|22534895|gb|AAN00718.1|AE014275_26 prophage LambdaSa2, terminase large subunit, putative [Streptococcus agalactiae 2603V/R] Length = 570 Score = 41.1 bits (94), Expect = 0.26, Method: Composition-based stats. Identities = 36/277 (12%), Positives = 70/277 (25%), Gaps = 31/277 (11%) Query: 11 LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70 E+ + + + L+ V WG + P +E + + Sbjct: 54 EEECSNTKGLAGKLRLALPQKVWLETTWGFYHTVEVTKTNPDT-----LEEYTDYEERRL 108 Query: 71 NNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP--GMSIICIANSETQLKNTLWAEV 128 + P I RG GKTTL + + G I +A S Q L+ Sbjct: 109 IHEVP------IIVPRGTGKTTLGSAIAEVGQIIDGEWGADIQLLAYSREQA-GYLFNAS 161 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188 LS + ++ L + T + + + Sbjct: 162 RAMLSNEESLLHYMREADILRST-------------KQGILYETTNSLMSIKTSDYESLD 208 Query: 189 NTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW 248 T+ DE D K + + WI + +F+ W Sbjct: 209 GTNAHYNIFDEVHTYDDDFIKVVNDG--SSRKRKNWITWYISTNGTKR-DKLFDKYYNIW 265 Query: 249 KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285 D + + + + + + + Sbjct: 266 VDILDDKIINDSV-MPWIYQLDDVSEIHDPDMWQKAM 301 >gi|116206834|ref|XP_001229226.1| hypothetical protein CHGG_02710 [Chaetomium globosum CBS 148.51] gi|88183307|gb|EAQ90775.1| hypothetical protein CHGG_02710 [Chaetomium globosum CBS 148.51] Length = 1561 Score = 41.1 bits (94), Expect = 0.26, Method: Composition-based stats. Identities = 15/119 (12%), Positives = 35/119 (29%), Gaps = 4/119 (3%) Query: 38 WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97 + ++ PL + Q + + + H + N P + I G G GK+ + + Sbjct: 1096 YDVEDMPLAARDTLNTQQRQVYDTIMRHFRAKNENRRPPPLRLQIDGGGGTGKSYMVKVI 1155 Query: 98 MLWL----ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSG 152 L I+ A + + L + ++ + + Sbjct: 1156 SSHLQAKAAFYGRPSPIVRAAPTGVASNQIGGQTLHSLLRLPVDGNYRSLSETPTTLNA 1214 >gi|299746105|ref|XP_001837738.2| hypothetical protein CC1G_06944 [Coprinopsis cinerea okayama7#130] gi|298406904|gb|EAU84082.2| hypothetical protein CC1G_06944 [Coprinopsis cinerea okayama7#130] Length = 1080 Score = 41.1 bits (94), Expect = 0.26, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 59/187 (31%), Gaps = 19/187 (10%) Query: 33 MRFFPWGIKGKPLEHFSQPHRWQLEFM---EAVDVHCHSNVNNSNPTIFKCAISAGRGIG 89 + +FP K KP + + ++++E + ++ V + G G Sbjct: 339 LFWFPTWKKFKPPANSVRLDQYRVESVLHSAHLNDSQRKVVETIGSDERSIIVHGPPGTG 398 Query: 90 KTTLNAWMM-LWLISTRPGMSIICIANSETQLKNTLWAEVSK------WLSMLPHRHWFE 142 KTT A + +W + P + +A+S +KN A + +S + W E Sbjct: 399 KTTTIAAISRIWDMHDCP---VWIVAHSNVAVKNIANALFKRDVDFKIIVSKEFYEEWHE 455 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSK----HYTITCRTYSEERPDTFVGPHNT--HGMAVF 196 L++ + L + I + P + Sbjct: 456 HLYLAIEAKLIRTDELPTDPVGLERVIGDSCVILSTLSTLSNPALDQNKMFELVPVERLI 515 Query: 197 NDEASGT 203 DEAS Sbjct: 516 VDEASQI 522 >gi|298531187|ref|ZP_07018588.1| type III restriction protein res subunit [Desulfonatronospira thiodismutans ASO3-1] gi|298509210|gb|EFI33115.1| type III restriction protein res subunit [Desulfonatronospira thiodismutans ASO3-1] Length = 978 Score = 41.1 bits (94), Expect = 0.26, Method: Composition-based stats. Identities = 26/194 (13%), Positives = 47/194 (24%), Gaps = 27/194 (13%) Query: 42 GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101 G + +P Q + A+ A G+GKT L A + Sbjct: 347 GTSKQSIIEPESIQPNVAQ--SEALEGLKKLRTRKARSGAVIAATGVGKTYLAA----FD 400 Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161 + IA+ E L+ R F + + S Sbjct: 401 FIQSGKDKCLFIAHREDILR--------------KARESFSHVLGPEGLEIFSGRSKDVS 446 Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221 + + R H + DE + + P+ Sbjct: 447 Y----GSKAVFAMIQTLGRQGNMKRFHPREFDYIVMDEFH---HAMANTYRKVLDYFQPD 499 Query: 222 RFWIMTSNTRRLNG 235 +T+ R++G Sbjct: 500 FLLGLTATPERMDG 513 >gi|156976669|ref|YP_001447575.1| ATP-dependent RNA helicase [Vibrio harveyi ATCC BAA-1116] gi|156528263|gb|ABU73348.1| hypothetical protein VIBHAR_05443 [Vibrio harveyi ATCC BAA-1116] Length = 430 Score = 41.1 bits (94), Expect = 0.26, Method: Composition-based stats. Identities = 27/272 (9%), Positives = 73/272 (26%), Gaps = 38/272 (13%) Query: 87 GIGKTTLNAWMMLWLIST------RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 G GKT + M+ + R + +A + E+++ ++ + + Sbjct: 48 GTGKTAAFSLPMIQQLLESGRSASRKTARALIMAPT---------RELAEQIADNI-KAY 97 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + LS+ ++ Q ++ + E + DEA Sbjct: 98 TKYTDLSVAAIFGGRKMSSQVTALEGGVDILVATPGRLEEHIEQGNVSVASIEFLVFDEA 157 Query: 201 SGTPDIIN--KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 D+ + + ++ T + + + +T Sbjct: 158 DRILDMGFIHAVRKIMMDVDTDPQIMMFSATTSSQLNLLAKDILRKPKRIEVERANTTAQ 217 Query: 259 EG------IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY----------- 301 +D ++S + ++ + + + + Sbjct: 218 TIAHVLYPVDQERKTELLSELIGRKNWKQVLVFVNYKETANDVVKELKLDGIKAVVCHGD 277 Query: 302 -IEEAMSREAID--DLYAPLIMGCDIAGEGGD 330 + A R + A +++ D+A G D Sbjct: 278 RAQSARRRALEEFKTGKARVMVATDVAARGLD 309 >gi|123509953|ref|XP_001329985.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3] gi|121913036|gb|EAY17850.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3] Length = 402 Score = 41.1 bits (94), Expect = 0.26, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 60/234 (25%), Gaps = 23/234 (9%) Query: 35 FFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN 94 P I +S+P Q + ++ + +A G GKT Sbjct: 8 VHPDIIAAVESMGWSKPTPIQEKTIKQAIAGED------------VSGAAETGSGKTGAF 55 Query: 95 AWMMLWLIS--TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSG 152 +L + RP I +A + + AEV++ +S ++ + G Sbjct: 56 LIPLLHQLLEKDRPEKYGIILAPTRELVIQI--AEVAQLMS-------AKLNITIVPIYG 106 Query: 153 WYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212 ++ + + H + + G + DEA + + Sbjct: 107 GVDDVEQMAQLAKRPHIIVATPGRLAQLIRDAKGFDLKPVRVIVIDEADKMAAVEFFDDI 166 Query: 213 GFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFH 266 T IM + + + V + Sbjct: 167 SVITSNCAKTHQIMLFSATMPKDLEKFTALYSKKASIVELTSEKQVPQALQEYM 220 >gi|237736755|ref|ZP_04567236.1| PhoH family protein [Fusobacterium mortiferum ATCC 9817] gi|229420617|gb|EEO35664.1| PhoH family protein [Fusobacterium mortiferum ATCC 9817] Length = 438 Score = 41.1 bits (94), Expect = 0.26, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 51/166 (30%), Gaps = 21/166 (12%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRP-GMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + G G GKT L L L+ + I+ K+ L + Sbjct: 248 VTLVGGAGTGKTLLAIAAGLELVVEKKRYKKILIARPIIPMGKD------------LGYL 295 Query: 139 HWFEMQSLSLHPSGWYAELL-----EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 E + L + + ++ + + + P T++ + Sbjct: 296 PGSEKEKLKPWMQPIFDNIDFLSEAKEDRAGEKVVEGLESMGMMKIEPLTYIRGRSIPKG 355 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239 + DEA + K+I T + I T + ++++ + D Sbjct: 356 LIIIDEAQNLTPLEIKTI---VTRAGQDTKIIFTGDPQQIDNPYLD 398 >gi|212540008|ref|XP_002150159.1| DNA-directed DNA polymerase theta, putative [Penicillium marneffei ATCC 18224] gi|210067458|gb|EEA21550.1| DNA-directed DNA polymerase theta, putative [Penicillium marneffei ATCC 18224] Length = 943 Score = 41.1 bits (94), Expect = 0.26, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 50/219 (22%), Gaps = 34/219 (15%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ + +A G GK+ + +ML + P I Sbjct: 155 PWQASCL---------LGRGHLTAEKNLLYTAPTGGGKSLVADVLMLRRVIDNPHRKAIL 205 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI-------- 164 + ++ L KWL + + + + W E + Sbjct: 206 VLPYVALVQEKL-----KWLRRIVQGVEKNIDTSASMKQPWKQPSKEIRVTGFFGGSKSR 260 Query: 165 ----DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI------INKSILGF 214 D+ T + + V DE D Sbjct: 261 ATWADTDIAICTIEKANALVNTAIEECNIDDLAVVVVDEIHMLDDDSRGYLLELMVTKLL 320 Query: 215 FTELNPNRF--WIMTSNTRRLNGWFYDIFNIPLEDWKRY 251 + + SNT+ L W + F+ Sbjct: 321 LLQQDIQIIGMSATLSNTQLLADWIHASFHASTHRPVPI 359 >gi|190346274|gb|EDK38320.2| hypothetical protein PGUG_02418 [Meyerozyma guilliermondii ATCC 6260] Length = 847 Score = 41.1 bits (94), Expect = 0.26, Method: Composition-based stats. Identities = 35/264 (13%), Positives = 67/264 (25%), Gaps = 27/264 (10%) Query: 26 LSFKNFVMRFFPW-GIKGKP-LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS 83 K + FP+ G P ++ QP ++ + + + ++ Sbjct: 203 HHPK--LKDVFPYLGSLETPPVKRAPQPEGMNIKLLPFQLEGLNWLLQQEEGEFRGGILA 260 Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 G+GKT + L +S P + + Q KN + L + H Sbjct: 261 DEMGMGKTIQTIALFLSDLSKGPNLVVGPTVA-LMQWKNEIEKHTKDGLLKVLLFHGANR 319 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + S + L S+ H+ V DEA Sbjct: 320 ATDVKELSKYNVILTSFSVLESVFRKQNYGFKRKAGLVKEKSPLHSIEFYRVVLDEAHNI 379 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRL-----------------NGWFYDIFNIPLE 246 D + + R W +T + + +F + Sbjct: 380 KDRTSGTAKAANNLKCSKR-WCLTGTPLQNRIGEMYSLIRFMKLEPFHQYFCTKCECSSD 438 Query: 247 DWKRYQIDTRT----VEGIDSGFH 266 +WK + + F Sbjct: 439 EWKFSDWRHCDICGHSPMVHTNFF 462 >gi|318042785|ref|ZP_07974741.1| protoporphyrin IX magnesium chelatase subunit ChlD [Synechococcus sp. CB0101] Length = 707 Score = 41.1 bits (94), Expect = 0.26, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 49/180 (27%), Gaps = 25/180 (13%) Query: 80 CAISAGRGIGKTTLNAWM--------MLWLISTRPGMSIICIANSETQLKNTLWAEVSKW 131 I+ GRG GK+ L + +L L S PG N + Q + + Sbjct: 45 VVIAGGRGTGKSVLARGLHALLPPIDVLDLGSPTPGQPAPAALNIDPQRPDDWDEPTRRR 104 Query: 132 LSMLPHRH----WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187 L+ L + + P+ + L + +T S + Sbjct: 105 LTELGADPSGDDTAALLPTKVIPAPFVQVPLGITEDRLVGSVDVTASLASGQAVFQPGLL 164 Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR-------------FWIMTSNTRRLN 234 H ++ DE + D I +L + I T N Sbjct: 165 AEAHRGVLYVDELNLLDDNITNLLLAAVSSGENRIEREGLSLSHPCRCLLIATYNPEEGA 224 >gi|308499375|ref|XP_003111873.1| hypothetical protein CRE_29522 [Caenorhabditis remanei] gi|308268354|gb|EFP12307.1| hypothetical protein CRE_29522 [Caenorhabditis remanei] Length = 1041 Score = 41.1 bits (94), Expect = 0.26, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 44/153 (28%), Gaps = 15/153 (9%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 Q + + +N C+++AGRG GK+ + L +I Sbjct: 255 TACQAKALLRFLDVITEKQSNVT-----CSLTAGRGRGKSAAV-GLSLAGAIAFGYTNIF 308 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + S LK V + + Q + + A ++ + + Sbjct: 309 VTSPSPENLKTLFEFIVKGF-------DALDYQEHTDYELIQSANPEFKNCLVRVNVFRE 361 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 +T P + DEA+ P Sbjct: 362 HKQTIQYISPTDVQKLG--QCELIVIDEAAAIP 392 >gi|255552113|ref|XP_002517101.1| ATP-dependent helicase NAM7, putative [Ricinus communis] gi|223543736|gb|EEF45264.1| ATP-dependent helicase NAM7, putative [Ricinus communis] Length = 882 Score = 41.1 bits (94), Expect = 0.26, Method: Composition-based stats. Identities = 24/165 (14%), Positives = 50/165 (30%), Gaps = 18/165 (10%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT +L L R I+ A S + + L + + + + F + + Sbjct: 422 GTGKTMTIVEAILQLYKNRKDTRILVCAPSNSAADHLLEKLLREKAANIRQNEIFRLNAT 481 Query: 147 SLHPSGWYAELLE-------------QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 S ++ + S + T + + H +H Sbjct: 482 SRPFGDIKSDYIRFCFFDELLFKCPPLSALRRYRIIISTFMSACYLYAEGVERGHFSH-- 539 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 +F DEA + + L + ++ + ++L Y Sbjct: 540 -IFLDEAGQASEPESMIPLSNLCGRD--TVVVLAGDPKQLGPVIY 581 >gi|167837009|ref|ZP_02463892.1| helicase, Snf2 family protein [Burkholderia thailandensis MSMB43] Length = 711 Score = 41.1 bits (94), Expect = 0.26, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 41/166 (24%), Gaps = 26/166 (15%) Query: 72 NSNPTIFKCAISAGR-------GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124 A+ AGR G+GKT L ++ + + LK Sbjct: 119 PYQAEGALFAVRAGRALICDEMGLGKTVQAIAAAEILTRHFGVSKVLVVCPT--SLKYQW 176 Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184 +E+ ++ L+E+ + + T E+ Sbjct: 177 QSEILRFSGRA--------------SRVVAGSLVERQNEYAEEDFCKI--TNYEKLKSDL 220 Query: 185 VGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 V DEA + N + ++T Sbjct: 221 DMISAWEPELVIVDEAQRIKN-WNTIAAKALKRIGSPYAVVLTGTP 265 >gi|307188367|gb|EFN73136.1| DNA2-like helicase [Camponotus floridanus] Length = 1167 Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 19/234 (8%), Positives = 56/234 (23%), Gaps = 15/234 (6%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 + + ++ + V + I G GKT ++ + G S++ A+ Sbjct: 725 AKIISDLNENQQRAVLKALAANEYILIKGMPGTGKTQTLVALI--ELLQTLGSSVLITAH 782 Query: 116 SETQLKNTLWAEVSK---WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 + + + N L + + +L + + + + + +S+ I Sbjct: 783 THSAVDNLLLKLLERNIDFLRLGSTKQIHPLLTCKSEEYALASCDSPESLETLYNSKQIV 842 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232 T DE++ + ++ +I+ + Sbjct: 843 GVTCLGAYH---ALLRRRTFDVCVVDESAQIMQPT--VLRPLYSTR----KFILVGDPD- 892 Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 + + + + G Sbjct: 893 QLPPIVKNKTAARLGADESLFTRLDSDNNTVNLLKQYRMNGRIMRLANDVTYHG 946 >gi|301300723|ref|ZP_07206908.1| putative phage terminase, large subunit [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851661|gb|EFK79360.1| putative phage terminase, large subunit [Lactobacillus salivarius ACS-116-V-Col5a] Length = 590 Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 25/180 (13%), Positives = 53/180 (29%), Gaps = 24/180 (13%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ + ++ H + + + GR GKTTL + + ++ G + Sbjct: 111 QPWQHFIVGSMFGWVHRDTG--LRRFREGLVFVGRKNGKTTLESGLADYMAGFDGERGAN 168 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 + +AN++ Q + L+ E + P+ + + + + Sbjct: 169 VYFLANAQVQARK-LYDESKAMIEDSPYLAKRFVTT-------------RSEIRFPKTNS 214 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 TI + + D + DE D S + + S Sbjct: 215 TIVPMSAEKNNKD------GENVHFAVFDEIHEYKDYFLISAMKQARGARLQPLIMYIST 268 >gi|260582117|ref|ZP_05849911.1| DNA helicase II [Haemophilus influenzae NT127] gi|260094749|gb|EEW78643.1| DNA helicase II [Haemophilus influenzae NT127] Length = 727 Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 40/303 (13%), Positives = 84/303 (27%), Gaps = 29/303 (9%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 E ++ ++ V + AG G GKT + + WLI+ +A Sbjct: 5 AELLDGLNDKQREAVAAPLGNH---LVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAV 61 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 + T N AE+ + +H W + + H+ Sbjct: 62 TFT---NKAAAEMRHRIQSTLAKHAQHQLFG-----MWIGTFHSIAHRLLRAHHLDVGLP 113 Query: 176 YSEERPDTFVGPHNTHGMAVF--NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233 + D+ + DE + P + + + Sbjct: 114 QDFQILDSEDQRRLIKRLLKLHNFDEKAF-PPKQACWYINNKKDEGLR--------PNDI 164 Query: 234 NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293 + ++ ++ YQ +D + + +F V Sbjct: 165 EDFNDRQEREWIKIYQIYQDTCDRAGLVDFAELLIRVYELFEKKPLILQRYQQRFQHILV 224 Query: 294 NNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353 + F N I+ + + +++ D D++ + RG IE+I + Sbjct: 225 DEFQDTNKIQYK-WIKILAGKTGKVMIVGD-----DDQS-IYGWRGAQIENIQKFLKDFK 277 Query: 354 QET 356 ET Sbjct: 278 AET 280 >gi|255082039|ref|XP_002508238.1| predicted protein [Micromonas sp. RCC299] gi|226523514|gb|ACO69496.1| predicted protein [Micromonas sp. RCC299] Length = 1901 Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 56/234 (23%), Gaps = 29/234 (12%) Query: 45 LEHFSQPHRWQLEFM---EAVDVHCHSNVNNSNPTIF----KCAISAGRGIGKTTLNAWM 97 L P + EF E + + T+F + A G GKT Sbjct: 966 LYPPENPELGRKEFFDLYEGKFEFFNKVQTQAFNTLFHSESNVLLGAPTGSGKTISAELA 1025 Query: 98 MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 M+ PG II IA + ++ + K +L ++ E+ Sbjct: 1026 MMAAFRDHPGGKIIYIAPLKALVRERIEDWKGKLCKVL-NKKLVELTGDYTPDIRALQGA 1084 Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI---INKSILGF 214 + V DE I + I+ Sbjct: 1085 DIIVCTPEKWDGISRQWQARSYVT---------KVSLVVIDEIHLLGADRGPILEVIVSR 1135 Query: 215 FTELNPNR--------FWIMTSNTRRLNGWFY-DIFNIPLEDWKRYQIDTRTVE 259 ++ +N L W + P ++ R V Sbjct: 1136 MRFISTRTERPVRIVGLSTALANANDLADWLGIEKQEGPKSGLFNFKPSVRPVP 1189 >gi|145641213|ref|ZP_01796793.1| DNA helicase II [Haemophilus influenzae R3021] gi|145274050|gb|EDK13916.1| DNA helicase II [Haemophilus influenzae 22.4-21] Length = 726 Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 40/303 (13%), Positives = 84/303 (27%), Gaps = 29/303 (9%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 E ++ ++ V + AG G GKT + + WLI+ +A Sbjct: 4 AELLDGLNDKQREAVAAPLGNH---LVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAV 60 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 + T N AE+ + +H W + + H+ Sbjct: 61 TFT---NKAAAEMRHRIQSTLAKHAQHQLFG-----MWIGTFHSIAHRLLRAHHLDVGLP 112 Query: 176 YSEERPDTFVGPHNTHGMAVF--NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233 + D+ + DE + P + + + Sbjct: 113 QDFQILDSEDQRRLIKRLLKLHNFDEKAF-PPKQACWYINNKKDEGLR--------PNDI 163 Query: 234 NGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293 + ++ ++ YQ +D + + +F V Sbjct: 164 EDFNDRQEREWIKIYQIYQDTCDRAGLVDFAELLIRVYELFEKKPLILQRYQQRFQHILV 223 Query: 294 NNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLI 353 + F N I+ + + +++ D D++ + RG IE+I + Sbjct: 224 DEFQDTNKIQYK-WIKILAGKTGKVMIVGD-----DDQS-IYGWRGAQIENIQKFLKDFK 276 Query: 354 QET 356 ET Sbjct: 277 AET 279 >gi|60099243|emb|CAH65452.1| hypothetical protein RCJMB04_38k15 [Gallus gallus] Length = 676 Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 27/209 (12%), Positives = 55/209 (26%), Gaps = 29/209 (13%) Query: 42 GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML-W 100 G F +P QL+ + + A G GKT + + + L Sbjct: 35 GLEAAGFHRPSPVQLKAI------------PLGRCGLDLIVQAKSGTGKTCVFSTIALDA 82 Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 L+ P ++ +A + E++ + + +M+ L H L + Sbjct: 83 LLLDSPATQVLILAPT---------REIAVQIHAVITTIGIKMEGLECHVFIGGTPLSQD 133 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-----IINKSILGFF 215 + + K + ++ + DEA + I Sbjct: 134 KVRL-KKCHIAVGSPGRIKQLIELDYLNTASIRLFILDEADKLLEEGSFQEQINWIYSSL 192 Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIP 244 N + + L P Sbjct: 193 -PANKQMLAVSATYPESLANALTMYMREP 220 >gi|50760381|ref|XP_417996.1| PREDICTED: hypothetical protein [Gallus gallus] Length = 767 Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 27/209 (12%), Positives = 55/209 (26%), Gaps = 29/209 (13%) Query: 42 GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML-W 100 G F +P QL+ + + A G GKT + + + L Sbjct: 35 GLEAAGFHRPSPVQLKAI------------PLGRCGLDLIVQAKSGTGKTCVFSTIALDA 82 Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 L+ P ++ +A + E++ + + +M+ L H L + Sbjct: 83 LLLDSPATQVLILAPT---------REIAVQIHAVITTIGIKMEGLECHVFIGGTPLSQD 133 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-----IINKSILGFF 215 + + K + ++ + DEA + I Sbjct: 134 KVRL-KKCHIAVGSPGRIKQLIELDYLNTASIRLFILDEADKLLEEGSFQEQINWIYSSL 192 Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIP 244 N + + L P Sbjct: 193 -PANKQMLAVSATYPESLANALTMYMREP 220 >gi|322498208|emb|CBZ33283.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 1065 Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 43/125 (34%), Gaps = 10/125 (8%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 C ++AGRG GK+ M + + +IIC A + + TL+ + L L +R Sbjct: 287 CVVTAGRGRGKSAAL-GMTIAGAIAQGYSNIICTAPTPENV-QTLFEFAIRGLKELGYRE 344 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + ++L + + ++ + + DE Sbjct: 345 RTDFEALQGVSEEFAKCFIRINVFREHRQTVQFVSAA--------DTAKFAQAELCVIDE 396 Query: 200 ASGTP 204 A+ P Sbjct: 397 AAALP 401 >gi|312877336|ref|ZP_07737302.1| protein of unknown function DUF815 [Caldicellulosiruptor lactoaceticus 6A] gi|311795899|gb|EFR12262.1| protein of unknown function DUF815 [Caldicellulosiruptor lactoaceticus 6A] Length = 469 Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 28/237 (11%), Positives = 71/237 (29%), Gaps = 21/237 (8%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMR-FFPWGIKGKPLEHFSQPHRWQLEFM 59 + + ++ L E L+ F F F W G L +L+ + Sbjct: 190 IEKFLNITPWS--SLIEELIEFHKQNGFGIFARYKGFSW--DGNNLVGIENLDPIRLDDL 245 Query: 60 EAVDVHCHSNVNNSNP-----TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 ++ V N+ + + RG GK++ ++ + G+ ++ + Sbjct: 246 VNIERQKKIVVENTLAFLNGKKVNNILLYGSRGSGKSSTVKALLNEF--SHRGLRVVEV- 302 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 + QL + ++ + L +P + + LS L+ + + Sbjct: 303 -FKDQLYT--FPKLIRILRDVPLKFIIFVDDLSFEDIEENYTKLKAILEGSLEAMPQNVV 359 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 Y+ V + + +DE ++ + + + + Sbjct: 360 IYATSNRRHLVKERFSDRSSFSDDEVH-----WQDTLEEKLSLADRFGIIVTYPSPT 411 >gi|295402561|ref|ZP_06812510.1| DEAD/DEAH box helicase domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|312112527|ref|YP_003990843.1| DEAD/DEAH box helicase [Geobacillus sp. Y4.1MC1] gi|294975409|gb|EFG51038.1| DEAD/DEAH box helicase domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|311217628|gb|ADP76232.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y4.1MC1] Length = 465 Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 22/192 (11%), Positives = 52/192 (27%), Gaps = 14/192 (7%) Query: 87 GIGKTTLNAWMMLWLI-STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 G GKT ++ + T + + +A + E+ K + ++ Sbjct: 49 GTGKTAAFGIPLIEKVDVTNEAIQGLVVAPTRELAIQVS-EELYKIGA---------VKR 98 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTP 204 + + P ++ Q + + + I H + V DEA Sbjct: 99 VRVLPIYGGQDIGRQIRALKKRPHIIVGTPGRIIDHINRKTLHLENVHTVVLDEADEMLN 158 Query: 205 DIINKSILGFFTE-LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 I + + + ++ + F + + + TV I Sbjct: 159 MGFIDDIEAILSNVPEKRQTLLFSATMPEPIRRIAERF-MNEPQIVKVKAKEMTVPNIQQ 217 Query: 264 GFHEGIISRYGL 275 + E + Sbjct: 218 YYLEVQEKKKFD 229 >gi|294813351|ref|ZP_06771994.1| Type III restriction protein res subunit [Streptomyces clavuligerus ATCC 27064] gi|326441713|ref|ZP_08216447.1| nucleotide modification protein [Streptomyces clavuligerus ATCC 27064] gi|294325950|gb|EFG07593.1| Type III restriction protein res subunit [Streptomyces clavuligerus ATCC 27064] Length = 538 Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 18/178 (10%), Positives = 45/178 (25%), Gaps = 11/178 (6%) Query: 60 EAVDVHCHSNVNNSNPTIF----KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 + H ++ + + G+GKT ++ + ++ +A Sbjct: 135 YGLFPHQRRAAGKVRRLLYSGERRTVLHLPTGVGKTRTGMDLICDHLRQHEPTLVVWLAR 194 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 L+ E + + L +R E+ + + Sbjct: 195 GRELLEQAAL-EFERAWASLGNR---EVTVARMWGDAPTDLDDITDGIVVLGLEKAGAAA 250 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233 S + DEA + ++ T + + +T+ R Sbjct: 251 KSTPGFLDQLALR---TTLTVFDEAHQAIAPTYRRVVEALTLRSDSSLLGLTATPGRT 305 >gi|224756704|gb|ACN62375.1| ATP dependent RNA helicase Hel61p [Leishmania tarentolae] Length = 545 Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 24/177 (13%), Positives = 45/177 (25%), Gaps = 20/177 (11%) Query: 43 KPLEHFSQPH---RWQLEFMEAV----DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95 PL F + RW E + + A G GKT A Sbjct: 89 TPLNSFEELRDAPRWLAEGLRTLKYPSTTDIQKFTIPLLAEGHDAIGLAPTGSGKTVAFA 148 Query: 96 WMMLWLISTRPGMS--IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153 L P + ++ +A + ++ T K L ++ Sbjct: 149 VPALAGFKPNPDGTPSVLVLAPTRELVQQTT-----KVFQNLGCGQVRVCEA------YG 197 Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS 210 A Q+ + + + + + + DEA D+ + Sbjct: 198 GAPRDLQARRLRNGCDVLVACPGRLKDFLDGGEVSLRNLSFLVFDEADRLLDMGFQV 254 >gi|254388739|ref|ZP_05003972.1| type III restriction enzyme [Streptomyces clavuligerus ATCC 27064] gi|197702459|gb|EDY48271.1| type III restriction enzyme [Streptomyces clavuligerus ATCC 27064] Length = 542 Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 18/178 (10%), Positives = 45/178 (25%), Gaps = 11/178 (6%) Query: 60 EAVDVHCHSNVNNSNPTIF----KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 + H ++ + + G+GKT ++ + ++ +A Sbjct: 139 YGLFPHQRRAAGKVRRLLYSGERRTVLHLPTGVGKTRTGMDLICDHLRQHEPTLVVWLAR 198 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 L+ E + + L +R E+ + + Sbjct: 199 GRELLEQAAL-EFERAWASLGNR---EVTVARMWGDAPTDLDDITDGIVVLGLEKAGAAA 254 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233 S + DEA + ++ T + + +T+ R Sbjct: 255 KSTPGFLDQLALR---TTLTVFDEAHQAIAPTYRRVVEALTLRSDSSLLGLTATPGRT 309 >gi|146083626|ref|XP_001464793.1| hypothetical protein [Leishmania infantum JPCM5] gi|134068887|emb|CAM59821.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 1065 Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 43/125 (34%), Gaps = 10/125 (8%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 C ++AGRG GK+ M + + +IIC A + + TL+ + L L +R Sbjct: 287 CVVTAGRGRGKSAAL-GMTIAGAIAQGYSNIICTAPTPENV-QTLFEFAIRGLKELGYRE 344 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + ++L + + ++ + + DE Sbjct: 345 RTDFEALQGVSEEFAKCFIRINVFREHRQTVQFVSAA--------DTAKFAQAELCVIDE 396 Query: 200 ASGTP 204 A+ P Sbjct: 397 AAALP 401 >gi|317177484|dbj|BAJ55273.1| Type IIG restriction-modification enzyme [Helicobacter pylori F16] Length = 1016 Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 65/233 (27%), Gaps = 47/233 (20%) Query: 5 ISTDQKLEQELHEMLMHAECVL------SFKNFVMRFFPWGIKG-------KPLEHFSQP 51 IST L E+ + S ++F+ W PL +P Sbjct: 114 ISTSNLSSNALEEIEQIRKSKGIDIVEISEEDFIYSQIDWEKFDPTQTQGELPLCDKKKP 173 Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 Q+E ++A + + N I A G GKT + L ++ + Sbjct: 174 RPHQIEAIKATKEYFSNPKNTRGK-----LIMAC-GTGKTYTS----LKIMEALEPKITL 223 Query: 112 CIANSETQLKNTLWAEVSKWLS---------------------MLPHRHWFEMQSLSLHP 150 +A S L + E ++ + L L P Sbjct: 224 FLAPSIALLSQ-TFREYAQEKNDPFYASIVCSDDKVGKGKKNKNDDDTDDINFSELPLKP 282 Query: 151 SGWYAELLEQSMGI--DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 S ++L ++KH+ I S R V DEA Sbjct: 283 STSPEDILSVYEKAQKENKHFIIFSTYQSALRIKEAQEVGLGEIDLVICDEAH 335 >gi|167750895|ref|ZP_02423022.1| hypothetical protein EUBSIR_01879 [Eubacterium siraeum DSM 15702] gi|167656074|gb|EDS00204.1| hypothetical protein EUBSIR_01879 [Eubacterium siraeum DSM 15702] Length = 812 Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 21/187 (11%), Positives = 39/187 (20%), Gaps = 15/187 (8%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 L FS + + C + N + G GKT + Sbjct: 240 LDNKLSKFSGSDSLISKLRMNISDRCCAFAKNDVGI---VQLIVPTGGGKTLSALRFAIE 296 Query: 101 LISTRPGMSIICIANSETQLKNT--LWAEV----------SKWLSMLPHRHWFEMQSLSL 148 I I+ + L+ + E+ S S + + ++ Sbjct: 297 YAVEHKKERIFYISPFMSILEQNGDVIREIAGDDNYLEHHSDMYSKIIDNKHKSKEEVND 356 Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208 + + T R + H + DE P Sbjct: 357 ELEDYELRCRHWDKQVICTTMVQFFDTLFSSRTEALRRMHRFTDSVIIIDEVQSIPIRCV 416 Query: 209 KSILGFF 215 Sbjct: 417 YLFNLAM 423 >gi|126643947|ref|XP_001388153.1| SWI/SNF-related, matrix associated, actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 [Cryptosporidium parvum Iowa II] gi|126117230|gb|EAZ51330.1| SWI/SNF-related, matrix associated, actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 [Cryptosporidium parvum Iowa II] Length = 807 Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 42/152 (27%), Gaps = 13/152 (8%) Query: 87 GIGKTTLNAWMMLWLISTRPGMS----IICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 G+GKT A +WL +I L + EVS W P + Sbjct: 221 GLGKT---AQTCVWLQYLFDSGKLVKPVIISCP--ASLLDNWTKEVSIW---APRIRAVK 272 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 +L E+ T + S + H + DEA Sbjct: 273 YHGSQKERRQIADQLFEEYEESRVDVIITTFQMLSNKMDINMAFKHFE-FSYMIVDEAHN 331 Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 + ++ ++ R ++T + Sbjct: 332 IKNSASQRYKSMSRKIQSERKLLLTGTPISNS 363 >gi|67624283|ref|XP_668424.1| SWI/SNF-related, matrix associated, actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 [Cryptosporidium hominis TU502] gi|54659629|gb|EAL38197.1| SWI/SNF-related, matrix associated, actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 [Cryptosporidium hominis] Length = 807 Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 42/152 (27%), Gaps = 13/152 (8%) Query: 87 GIGKTTLNAWMMLWLISTRPGMS----IICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 G+GKT A +WL +I L + EVS W P + Sbjct: 221 GLGKT---AQTCVWLQYLFDSGKLVKPVIISCP--ASLLDNWTKEVSIW---APRIRAVK 272 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 +L E+ T + S + H + DEA Sbjct: 273 YHGSQKERRQIADQLFEEYEESRVDVIITTFQMLSNKMDINMAFKHFE-FSYMIVDEAHN 331 Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 + ++ ++ R ++T + Sbjct: 332 IKNSASQRYKSMSRKIQSERKLLLTGTPISNS 363 >gi|298245680|ref|ZP_06969486.1| DEAD/DEAH box helicase domain protein [Ktedonobacter racemifer DSM 44963] gi|297553161|gb|EFH87026.1| DEAD/DEAH box helicase domain protein [Ktedonobacter racemifer DSM 44963] Length = 882 Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 31/233 (13%), Positives = 56/233 (24%), Gaps = 23/233 (9%) Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 + ++A G GKT L A +WL R G II L N Sbjct: 18 DDFQLESVSHLLDGRSVMVAAPTGTGKT-LVAEFAVWLAQKR-GQRIIYTTP-LKALSNQ 74 Query: 124 LWAEVSKWLS----MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 + ++ + L E S+ E+ + D + Sbjct: 75 KYRDMRELYGYDNVGLVTGDIVEHSHASI--VIMTTEVYRNMLLEDGGERFVNG------ 126 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPD-----IINKSILGFFTELNPNRFWIMTSNTRRLN 234 + V DE D + ++I+ + SN L Sbjct: 127 --ERLDASELRDVGFVVFDELHYLSDFDRGPVWEEAIICSPKHVQLVGLSATVSNAEDLA 184 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287 W + + + + G + + G+ Sbjct: 185 SWISRVHRPISLVFHEQRAVPLEHYYYYGDKIHLVQDAEGNRVNRFP-RVGGE 236 >gi|269965041|ref|ZP_06179206.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269830344|gb|EEZ84569.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 675 Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 36/248 (14%), Positives = 67/248 (27%), Gaps = 40/248 (16%) Query: 40 IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFK--CAISAGRGIGKTTLNAWM 97 + KPL + + E H S + K ++A RG GKT+ Sbjct: 133 EQDKPLPTAPDIKQAEKESHYTEQEHAISLIEKVVTGHRKRPLVLTADRGRGKTSALGIA 192 Query: 98 MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 L+ +P + I+ A S ++ L +LP+ L Sbjct: 193 CASLLQQKP-LRILITAPSIKAVEPVYQH----ALRLLPNAQRIRKDRLE---------- 237 Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217 + + + + + DEA+ P + Sbjct: 238 --------------SGQGSIQFIAPDELLLSRPECDLLLVDEAAAIP-------VPMLKS 276 Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277 + + ++ S T F I DW + Q + L+S Sbjct: 277 ITEHYHRLVFSTTIHGYEGCGRGFTIKFVDWLQKQRSGM--KTWHMTQPIRWSMNDALES 334 Query: 278 DVARIEIL 285 + +L Sbjct: 335 WLYDAFLL 342 >gi|257456356|ref|ZP_05621553.1| DNA translocase ftsk [Treponema vincentii ATCC 35580] gi|257446442|gb|EEV21488.1| DNA translocase ftsk [Treponema vincentii ATCC 35580] Length = 1078 Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 39/336 (11%), Positives = 81/336 (24%), Gaps = 27/336 (8%) Query: 44 PLEHFSQPHRWQLEFMEAVDVHCHSNVNN-SNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102 L P ++ A+ N I+ G GK+ ++L ++ Sbjct: 723 ELIETDLPEAAKMAIPVALGKDVTGNPQVLDLAQTPHLLIAGATGSGKSVCVNSIILSIL 782 Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162 R + I ++ L+ +++ L+ + Q+L Sbjct: 783 YNRRPDEVKLILVDPKIVELKLYNDIAHLLTPVITEPKRAFQALQYALCEMERRYALLDN 842 Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT-----E 217 T + SE + + + DE + K + Sbjct: 843 MGVRDIKTFNAKIKSERIATEALP-----YIVIIIDEFADLMATSGKELEATVARLCAMS 897 Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277 ++ + ++ I I + G Sbjct: 898 RAVGIHLVLATQRPSIDVITGLIKANIPSRIAFMVASKTDSRIILDEMGAEKLLGKGDML 957 Query: 278 DVARIEILGQFPQQEVNNFIPHNYIEE--AMSREAIDDLYAPLIMGC-------DIAGEG 328 V+ FP + F+ +E A +E + Y + D A Sbjct: 958 YVSAAR---PFPTRIQGAFVSEQEVERVVACVKEYCEPEYIDEEIFVDDDDEPYDNAVFS 1014 Query: 329 GDKTVVVFRRGNIIEHIFDWSAKLIQETNQEGCPVG 364 D + I ++ K Q +G Sbjct: 1015 DDNDPLY----EQALEIVTFAGKASASYVQRKLKIG 1046 >gi|229816677|ref|ZP_04446965.1| hypothetical protein COLINT_03725 [Collinsella intestinalis DSM 13280] gi|229807729|gb|EEP43543.1| hypothetical protein COLINT_03725 [Collinsella intestinalis DSM 13280] Length = 984 Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 25/187 (13%), Positives = 54/187 (28%), Gaps = 37/187 (19%) Query: 51 PHRWQLEFMEAVDV-HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 P++ Q + +EA+ H + + + + G GKT L+A+ + + Sbjct: 241 PNKMQEKALEALAALHERRDP--------RALLVSATGTGKTYLSAFDVKAAA----PVR 288 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ +A+ K L A ++ + +L + + + Sbjct: 289 VLFLAHR----KRILTASMASYKKLLGDNYTYGL-----------------YRAGGDGTE 327 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 + DEA + I P MT+ Sbjct: 328 FTCTFAMCSTICGYLDKIDAELFDYIVIDEAHRVGAKGYQRI---LEHFKPKFCLGMTAT 384 Query: 230 TRRLNGW 236 R +G+ Sbjct: 385 PNRTDGY 391 >gi|195037008|ref|XP_001989957.1| GH19081 [Drosophila grimshawi] gi|193894153|gb|EDV93019.1| GH19081 [Drosophila grimshawi] Length = 2181 Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 48/177 (27%), Gaps = 24/177 (13%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L F+ + Q + + + + A G GKT + + ++ Sbjct: 1331 LYKFTHFNPIQTQIFHCLYHTDN-----------NVLLGAPTGSGKTIVAEIAIFRALNL 1379 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 P ++ IA + +K ++ W FE L L ++ + Sbjct: 1380 DPKCKVVYIAPLKALVKER----IADWQQR------FEQSELGLKVVELTGDV-TPDIRA 1428 Query: 165 DSKHYTITCRTYSEERPDTFVGPHN--THGMAVFNDEASGTPDIINKSILGFFTELN 219 + I + + H + DE + I + N Sbjct: 1429 IRESQLIVTTPEKWDGISRSWQTRDYVQHVALIVIDEIHLLGEDRGPVIEVIVSRTN 1485 >gi|159127927|gb|EDP53042.1| DEAD/DEAH box helicase, putative [Aspergillus fumigatus A1163] Length = 1796 Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 56/231 (24%), Gaps = 33/231 (14%) Query: 25 VLSFKNFVMR---FFPWGIKGKPLEHFSQ--PHRWQLEFMEAVDVHCHSNVNNSNPTIFK 79 L F+ F + F G + P +WQ + ++ +D + Sbjct: 713 PLDFQAFQLLHCGPFMDRQTGAKPDDRVGFEPDKWQKDVLDELDKN------------HS 760 Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT---LWAEVSKWLSMLP 136 + A GKT ++ + M ++ ++ +A ++ + + A K S Sbjct: 761 VFVVAPTSAGKTFISFYAMSKVLQEDDTGVLVYVAPTKALVNQIGAEIHARFRKRYSGPE 820 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 W ++L + + S T+ + Sbjct: 821 QTVWAIATRDVRINDPLKCQILVTV------PHFLQIMLLSSANATTW----APRVKCII 870 Query: 197 NDEASGT--PDIINKSILGFFTELNPNR-FWIMTSNTRRLNGWFYDIFNIP 244 DE D N W N Sbjct: 871 FDEIHSIGHTDDGLVWEQLLLLAPCRIIALSATVGNPSEFADWLQSTQNNM 921 >gi|146323319|ref|XP_001481607.1| DEAD/DEAH box helicase [Aspergillus fumigatus Af293] gi|129558349|gb|EBA27477.1| DEAD/DEAH box helicase, putative [Aspergillus fumigatus Af293] Length = 1796 Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 56/231 (24%), Gaps = 33/231 (14%) Query: 25 VLSFKNFVMR---FFPWGIKGKPLEHFSQ--PHRWQLEFMEAVDVHCHSNVNNSNPTIFK 79 L F+ F + F G + P +WQ + ++ +D + Sbjct: 713 PLDFQAFQLLHCGPFMDRQTGAKPDDRVGFEPDKWQKDVLDELDKN------------HS 760 Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT---LWAEVSKWLSMLP 136 + A GKT ++ + M ++ ++ +A ++ + + A K S Sbjct: 761 VFVVAPTSAGKTFISFYAMSKVLQEDDTGVLVYVAPTKALVNQIGAEIHARFRKRYSGPE 820 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 W ++L + + S T+ + Sbjct: 821 QTVWAIATRDVRINDPLKCQILVTV------PHFLQIMLLSSANATTW----APRVKCII 870 Query: 197 NDEASGT--PDIINKSILGFFTELNPNR-FWIMTSNTRRLNGWFYDIFNIP 244 DE D N W N Sbjct: 871 FDEIHSIGHTDDGLVWEQLLLLAPCRIIALSATVGNPSEFADWLQSTQNNM 921 >gi|37523180|ref|NP_926557.1| phosphate starvation-inducible protein PhoH-like protein [Gloeobacter violaceus PCC 7421] gi|35214183|dbj|BAC91552.1| gll3611 [Gloeobacter violaceus PCC 7421] Length = 323 Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 39/148 (26%), Gaps = 17/148 (11%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT L A + + R II + + L + + +L Sbjct: 137 GTGKTYLAAVQAVLALQERRVERIILTRPA-VEAGERLGFLPGDLQAKVSPYLRPLYDAL 195 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + + + E P ++ V DEA T Sbjct: 196 YDFMEP-------------ERLMQLMEKGTIEVAPLAYMRGRTLSNAFVILDEAQNTTAE 242 Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLN 234 K T L ++T + + + Sbjct: 243 QMKM---MLTRLGNASKMVVTGDPTQTD 267 >gi|218885832|ref|YP_002435153.1| phage uncharacterized protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756786|gb|ACL07685.1| phage uncharacterized protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 558 Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 48/367 (13%), Positives = 84/367 (22%), Gaps = 71/367 (19%) Query: 19 LMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIF 78 HA+ F F +FP K S HRW E + + P Sbjct: 48 KRHAQAQDDFVFFRRTYFPHYAKS---GGDSVLHRWLDEELPRIVA---------APEGV 95 Query: 79 KCAISAGRGIGKTTLNA-WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 K A++A RG K+T A + +LW + T ++ IA++ Q L A + + Sbjct: 96 KLAVAAPRGEAKSTYVALFFVLWCVLTNRKKYLLLIADALEQAAALLEAVKVELEANPRI 155 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 F + + ++ + + R P Sbjct: 156 GMDFPDAAGQGRVWNVGTIVTRSNVKLQALGAGKRMRGLR-HGPHRPDLAVLDDLEN--- 211 Query: 198 DEASGTP--------------------DIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 DE P D I + F Sbjct: 212 DENVLKPEQRDKLQGWLQRTVLSLGPADDSMDVIYVGTILHYDSVLARTLQKPLWRGKRF 271 Query: 238 YDIFNIPL-----EDWKRYQIDT-------------------RTVEGIDSGFHEGIISRY 273 + P + W+ V ++ + Sbjct: 272 RAVIRWPDRMDLWDRWEGILRAEGADAARAFHAANAADMERNAEVSWPSMRPLYKLMLKR 331 Query: 274 GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA----GEGG 329 D E P + ++ D + G G Sbjct: 332 AEDHAAFDAEQQND-PLSGDDAPFA-----ACITFWVDRRADWLFFGAVDPSLGKHGAGR 385 Query: 330 DKTVVVF 336 D + ++ Sbjct: 386 DPSAILV 392 >gi|146092266|ref|XP_001470248.1| mitochondrial DEAD box protein [Leishmania infantum] gi|134085042|emb|CAM69443.1| putative mitochondrial DEAD box protein [Leishmania infantum JPCM5] gi|322500550|emb|CBZ35627.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 544 Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 24/177 (13%), Positives = 46/177 (25%), Gaps = 20/177 (11%) Query: 43 KPLEHFSQPH---RWQLEFMEAV----DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95 PL F + RW E ++ + A G GKT A Sbjct: 89 TPLNSFEELRDAPRWLAEGLKTLKYPSTTDIQKFTIPLLADGHDVIGLAPTGSGKTVAFA 148 Query: 96 WMMLWLISTRPGMS--IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153 L P + ++ +A + ++ T K L ++ Sbjct: 149 VPALAGFKPNPDGTPSVLVLAPTRELVQQTT-----KVFQNLGCGQVRVCEA------YG 197 Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS 210 A Q+ + + + + + + DEA D+ + Sbjct: 198 GAPRDLQARRLRNGCDALVACPGRLKDFLDGGDVSIRNLSFLVFDEADRLLDMGFQV 254 >gi|327461143|gb|EGF07476.1| prophage LambdaSa04 protein [Streptococcus sanguinis SK1057] Length = 530 Score = 41.1 bits (94), Expect = 0.28, Method: Composition-based stats. Identities = 35/329 (10%), Positives = 77/329 (23%), Gaps = 54/329 (16%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ + + + + N T + + + GK+ L A + Sbjct: 48 PWQEQIVRDLFGIVKEDGNRQFLTAY---VEIPKKNGKSELAAA----IALYLLYADGEA 100 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 A + A + F++ + S + + Sbjct: 101 SAEVYGAACDRNQASIV-----------FDVAKQMVLMSRALEKRSKVMGATKRIINYSN 149 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT-- 230 Y +T H + + DE P+ +L + + T Sbjct: 150 AGFYQVLSAETG-TKHGLNVSGLVFDEIHAQPNRHLYDVLTKGSGDAREQPLFFIITTAG 208 Query: 231 RRLNGWFYDIFNIP----------------------LEDW----KRYQIDTRTVEGIDSG 264 N Y++ +DW + + I Sbjct: 209 NDKNSICYELHTKALDILKGRKKDSTFYPVVYGLSEEDDWNDEENWLKANPSLGHTIGID 268 Query: 265 FHEGIISRYGLDS---DVARIEILGQFPQQEVNNFIPHNYIEEA-MSREAIDDLYAPLIM 320 + +V + L + V +IP + ++ + Sbjct: 269 RVREAYLNALDNPAEENVFKQLRLNIWTNSAVT-WIPEHIYDKGSQEIDVESLKGRDCYA 327 Query: 321 GCDIAGEGGDKTVVVFRRGNIIEHIFDWS 349 G D++ D T V + ++ Sbjct: 328 GLDLSST-SDITAFVLIFPPR-REVENYQ 354 >gi|255093167|ref|ZP_05322645.1| ATP-dependent RNA helicase [Clostridium difficile CIP 107932] gi|255314909|ref|ZP_05356492.1| ATP-dependent RNA helicase [Clostridium difficile QCD-76w55] gi|255517583|ref|ZP_05385259.1| ATP-dependent RNA helicase [Clostridium difficile QCD-97b34] gi|260683781|ref|YP_003215066.1| ATP-dependent RNA helicase [Clostridium difficile CD196] gi|260209944|emb|CBA63924.1| ATP-dependent RNA helicase [Clostridium difficile CD196] Length = 497 Score = 41.1 bits (94), Expect = 0.28, Method: Composition-based stats. Identities = 21/235 (8%), Positives = 56/235 (23%), Gaps = 13/235 (5%) Query: 60 EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI-STRPGMSIICIANSET 118 + V + + G GKT A + I + + + + Sbjct: 23 YNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTASFAIPLCENINVDCNNIQALIVVPTRE 82 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 E+S + R S+ + + + + Sbjct: 83 LALQV-KDEISDIGRLKKVRCSAIFGKQSIKDQIA---------ELKQRVHIVVATPGRI 132 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNT-RRLNGW 236 + + DEA + + L + + S T + Sbjct: 133 LDHINKGSIKLENVKYLVIDEADKMFNKGFVEQMEKILLNLPKEKIVSLFSATIDEEIKY 192 Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291 + + + + ++ T + + I + + + I + P+ Sbjct: 193 ICEKYMLDYSVINIEENESDTNQKTRQIDDKIIKANGREKYILLKELIYSENPKS 247 >gi|198277095|ref|ZP_03209626.1| hypothetical protein BACPLE_03303 [Bacteroides plebeius DSM 17135] gi|198269593|gb|EDY93863.1| hypothetical protein BACPLE_03303 [Bacteroides plebeius DSM 17135] Length = 771 Score = 41.1 bits (94), Expect = 0.28, Method: Composition-based stats. Identities = 45/326 (13%), Positives = 95/326 (29%), Gaps = 48/326 (14%) Query: 7 TDQKLEQELHEMLMHAECVLSFKNFVMRFFP-WGIKGKPLEHFSQ---PHRWQLEFMEAV 62 T ++ E +L E + I P + + P +Q ++ Sbjct: 116 TGKETEIKLENFPTEEELYNRYLASKNYTSDELNIIETPFYYDAHSHEPRYYQRIAVDRT 175 Query: 63 DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN 122 + + G GKT ++ L + I+ +A+ +N Sbjct: 176 VEAIARGQQ-------RVLVVMATGTGKTFTAFQIIHRLHKSGAKKKILYLAD-----RN 223 Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182 L + + F + S+ ++ + ++ + + E +PD Sbjct: 224 ILIDQT--MVQDFKPFKKFMTKITSV--GEGEEKIDSSYEVYIALYHQLVGK---EGKPD 276 Query: 183 TFVGPHNTHGMAVFNDEA---SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239 F+ + DE S D + +L +F+ MT+ + G Sbjct: 277 PFLEVQPNFFDLIIVDECHRGSAKDDSAWRKVLEYFSSATQ---IGMTATPKADEG---- 329 Query: 240 IFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299 +D +GI D +A + F ++ + P Sbjct: 330 ----------ANNLDYFGEPVYTYSLLQGI-----QDGFLAPYRVTADFINVDLQGWTPD 374 Query: 300 NYIEEAMSREAIDDLYAPLIMGCDIA 325 + + +E LY +G D+A Sbjct: 375 EGEIDLLGKEIEQKLYQRQNIGRDLA 400 >gi|164657404|ref|XP_001729828.1| hypothetical protein MGL_2814 [Malassezia globosa CBS 7966] gi|159103722|gb|EDP42614.1| hypothetical protein MGL_2814 [Malassezia globosa CBS 7966] Length = 540 Score = 41.1 bits (94), Expect = 0.28, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 40/150 (26%), Gaps = 12/150 (8%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 E + + H + + + G+GK+T A + WL+ R + I Sbjct: 349 ELLATLPAHAVRGNVSPSLNPYSIGFVGVNGVGKSTNLAKVCFWLLQNRYRVLIAACDTF 408 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 + L V + H + G A +LE K + Sbjct: 409 RSGAVEQLRTHVRNLGELEVDGHRV-----ADGAPGTGAAMLELYERGYGKDAAGIAK-- 461 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 D N V D A D Sbjct: 462 -----DALAYARNEGFDVVLIDTAGRMQDN 486 >gi|39935629|ref|NP_947905.1| amino acid ABC transporter ATP-binding protein [Rhodopseudomonas palustris CGA009] gi|192291213|ref|YP_001991818.1| ABC transporter [Rhodopseudomonas palustris TIE-1] gi|39649482|emb|CAE28004.1| amino acid ABC transporter, ATP-binding protein aapP-1 [Rhodopseudomonas palustris CGA009] gi|192284962|gb|ACF01343.1| ABC transporter related [Rhodopseudomonas palustris TIE-1] Length = 246 Score = 41.1 bits (94), Expect = 0.28, Method: Composition-based stats. Identities = 18/192 (9%), Positives = 48/192 (25%), Gaps = 27/192 (14%) Query: 42 GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101 P+ + ++W EF H +++ + I G GK+TL + Sbjct: 3 DTPIVSIAGLNKWYGEF------HVLRDISLDVARSERIVICGPSGSGKSTLI--RCINA 54 Query: 102 ISTRPGMSIIC----IANSETQLKNTLWAEVSKWLSMLPHRHWFE----MQSLSLHPS-G 152 + I+ + + + EV + Sbjct: 55 LEEFQEGKIVVDGIDLGPTLKHVDEI-RREVGMVFQSFNLFPHLTVLENCTLAPIWVRNI 113 Query: 153 WYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH-------NTHGMAVFNDE--ASGT 203 + +M + + + + + DE ++ Sbjct: 114 PKKDAEATAMKFLERVRIPDKANKYPGQISGGQQQRVAIARALSMNPKVMLFDEPTSALD 173 Query: 204 PDIINKSILGFF 215 P+++ + + Sbjct: 174 PEMVKEVLDTMV 185 >gi|325261984|ref|ZP_08128722.1| CRISPR-associated helicase Cas3 domain protein [Clostridium sp. D5] gi|324033438|gb|EGB94715.1| CRISPR-associated helicase Cas3 domain protein [Clostridium sp. D5] Length = 713 Score = 41.1 bits (94), Expect = 0.28, Method: Composition-based stats. Identities = 22/168 (13%), Positives = 49/168 (29%), Gaps = 8/168 (4%) Query: 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN--TLWAEVSKWLSM 134 +F+ + G GKT + L II + + ++ +++E+ ++ Sbjct: 233 LFRLTV--PTGGGKTVASLAFALQHAVKNKLDRIIYVIPYTSIIEQNAKVFSEILGKNNV 290 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 L + + S + + + HN Sbjct: 291 LENHCNVDYDSEEE-LKPMQLAAENWDKPVVVTTNVQFFESLFANKSSKCRKLHNIANSV 349 Query: 195 VFNDEASGTPDIINKSILGFFTE---LNPNRFWIMTSNTRRLNGWFYD 239 + DEA P+ K + E + + T+ L+ +F Sbjct: 350 IIFDEAQMLPNDYLKPCIAMMEELLKRYRSSIVLCTATQPALSQFFQK 397 >gi|192360930|ref|YP_001982918.1| CRISPR-associated helicase Cas3 domain-containing protein [Cellvibrio japonicus Ueda107] gi|190687095|gb|ACE84773.1| CRISPR-associated helicase Cas3 domain protein [Cellvibrio japonicus Ueda107] Length = 817 Score = 41.1 bits (94), Expect = 0.28, Method: Composition-based stats. Identities = 30/251 (11%), Positives = 58/251 (23%), Gaps = 31/251 (12%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 + E + +C +N S ++ + G GKT + L II Sbjct: 255 RNYVDELRREISNNCKNNAYKSQG-LYTLTV--PTGGGKTYASLRYALHHARHHGLERII 311 Query: 112 CIANSETQLKN--TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ--SMGIDSK 167 I + ++ + E+ + S +L W ++L+ + I Sbjct: 312 YIIPYTSIIEQNAKVIREIVEHKSDTRPWVLEHHSNLEPEQQTWQSKLVSENWDAPIVLT 371 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN----KSILGFFTELNPNRF 223 T H + DE P + N Sbjct: 372 TMVQLLETLFSGGTKGVRRLHQLANSVLVFDEIQTLPINCVHIFCNVMNFLVQGCNTTAV 431 Query: 224 WIMTSNT------------------RRLNGWFYDIFNIPL--EDWKRYQIDTRTVEGIDS 263 + L G F F + + + + + I + Sbjct: 432 LCTATQPLLNELKCPEKGQLIVSEGNELAGDFNRHFVDLRRVDIYNQIKPGGWSAPEISA 491 Query: 264 GFHEGIISRYG 274 E Sbjct: 492 LALEQFQKHGS 502 >gi|499204|gb|AAC14192.1| D-E-A-D box protein [Drosophila melanogaster] Length = 644 Score = 41.1 bits (94), Expect = 0.28, Method: Composition-based stats. Identities = 20/141 (14%), Positives = 38/141 (26%), Gaps = 4/141 (2%) Query: 72 NSNPTIFK-CAISAGRGIGKTTLNAWMMLWLISTRPGMSI--ICIANSETQLKNTLWAEV 128 P + +SA G GKT A ++ L+S R + + + + + Sbjct: 177 KPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVDCKVRALVVLPVAELALQV-YRVI 235 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188 S+ S + L + +T + G Sbjct: 236 SELCSKTELEVCLLSKQHKLEDEQEKLVEQYKGKYYSKADIVVTTPGRLVDHLHATKGFC 295 Query: 189 NTHGMAVFNDEASGTPDIINK 209 + DEA D + + Sbjct: 296 LKSLKFLVIDEADRIMDAVFQ 316 >gi|17136666|ref|NP_476833.1| dead box protein 73D [Drosophila melanogaster] gi|12644178|sp|P26802|DDX51_DROME RecName: Full=Probable ATP-dependent RNA helicase Dbp73D; Short=DEAD box protein 73D gi|4972732|gb|AAD34761.1| unknown [Drosophila melanogaster] gi|7294064|gb|AAF49419.1| dead box protein 73D [Drosophila melanogaster] gi|33589494|gb|AAQ22514.1| LD27814p [Drosophila melanogaster] Length = 687 Score = 41.1 bits (94), Expect = 0.28, Method: Composition-based stats. Identities = 20/141 (14%), Positives = 38/141 (26%), Gaps = 4/141 (2%) Query: 72 NSNPTIFK-CAISAGRGIGKTTLNAWMMLWLISTRPGMSI--ICIANSETQLKNTLWAEV 128 P + +SA G GKT A ++ L+S R + + + + + Sbjct: 177 KPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVDCKVRALVVLPVAELALQV-YRVI 235 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188 S+ S + L + +T + G Sbjct: 236 SELCSKTELEVCLLSKQHKLEDEQEKLVEQYKGKYYSKADIVVTTPGRLVDHLHATKGFC 295 Query: 189 NTHGMAVFNDEASGTPDIINK 209 + DEA D + + Sbjct: 296 LKSLKFLVIDEADRIMDAVFQ 316 >gi|327289195|ref|XP_003229310.1| PREDICTED: u5 small nuclear ribonucleoprotein 200 kDa helicase-like [Anolis carolinensis] Length = 1724 Score = 41.1 bits (94), Expect = 0.28, Method: Composition-based stats. Identities = 21/161 (13%), Positives = 44/161 (27%), Gaps = 15/161 (9%) Query: 54 WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q +F + + V NS+ +F + A G GK+ + +L ++ + Sbjct: 1321 YQDKFPFFNPIQTQVFNTVYNSDENVF---VGAPTGSGKSICAEFAILRMLLQNSEGRCV 1377 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 I E + K+ L + S + S + + I Sbjct: 1378 YITPMEALAEQIFLDWYEKFQERLLKKVVLLTGETSTDLKLLVKGNIIIS---TPEKWDI 1434 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212 R + + + DE + Sbjct: 1435 LSRRWK-------QRKNVQNVNLFIVDEVHLIGGENGPVLE 1468 >gi|323508306|emb|CBQ68177.1| related to INO80-ATPase with chromatin remodeling and helicase activity [Sporisorium reilianum] Length = 1910 Score = 41.1 bits (94), Expect = 0.28, Method: Composition-based stats. Identities = 26/230 (11%), Positives = 54/230 (23%), Gaps = 31/230 (13%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GMS 109 +QL+ + + +N G+GKT + +M +L Sbjct: 1005 EYQLKGLNWLANLYEQGINGILADEM--------GLGKTVQSISLMAYLAEVHDIWGPFL 1056 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 +I A++ E+SK++ L ++ + + + + Sbjct: 1057 VIAPASTLHN----WQQEISKFVPTLKALPYWGNVKDRAVLRKF---WNRKQISYNRDAP 1109 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 T + + DEA N ++T Sbjct: 1110 FHVLVTSYQLVVSDEKYFQRVKWQYMILDEAQAIKSSS-SIRWKTLLGFNCRNRLLLTGT 1168 Query: 230 TRRLNGWFYDIFNIPLEDW---KRYQIDTRTVEGIDSGFHEGIISRYGLD 276 + N E W S + I + Sbjct: 1169 P---------VQNSMQELWALLHFIMPSLFDSHDEFSEWFSKDIESHAEQ 1209 >gi|312793794|ref|YP_004026717.1| hypothetical protein Calkr_1611 [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180934|gb|ADQ41104.1| protein of unknown function DUF815 [Caldicellulosiruptor kristjanssonii 177R1B] Length = 440 Score = 41.1 bits (94), Expect = 0.28, Method: Composition-based stats. Identities = 28/237 (11%), Positives = 71/237 (29%), Gaps = 21/237 (8%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMR-FFPWGIKGKPLEHFSQPHRWQLEFM 59 + + ++ L E L+ F F F W G L +L+ + Sbjct: 161 IEKFLNITPWS--SLIEELIEFHKQNGFGIFARYKGFSW--DGNNLVGIENLDPIRLDDL 216 Query: 60 EAVDVHCHSNVNNSNP-----TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 ++ V N+ + + RG GK++ ++ + G+ ++ + Sbjct: 217 VNIERQKKIVVENTLAFLNGKKVNNILLYGSRGTGKSSTVKALLNEF--SHRGLRVVEV- 273 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 + QL + ++ + L +P + + LS L+ + + Sbjct: 274 -FKDQLYT--FPKLIRILRDVPLKFIIFVDDLSFEDIEENYTKLKAILEGSLEAMPQNVV 330 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 Y+ V + + +DE ++ + + + + Sbjct: 331 IYATSNRRHLVKERFSDRSSFSDDEVH-----WQDTLEEKLSLADRFGIIVTYPSPT 382 >gi|167522693|ref|XP_001745684.1| hypothetical protein [Monosiga brevicollis MX1] gi|163776033|gb|EDQ89655.1| predicted protein [Monosiga brevicollis MX1] Length = 2142 Score = 41.1 bits (94), Expect = 0.28, Method: Composition-based stats. Identities = 22/187 (11%), Positives = 45/187 (24%), Gaps = 17/187 (9%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 + A G GKT +L RP + +A ++ + + R Sbjct: 1344 VFVGAPTGSGKTVCAELTLLRAFGLRPDSKAVYVAATQA---------ICDQTAAAW-RD 1393 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 F + S + + T + H DE Sbjct: 1394 LFGAKLGKTVVSLTGDSSADLKLVGRGDLIVATAEQWDVISRRWKQRRHVQAVNLYIVDE 1453 Query: 200 AS-------GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQ 252 A +I++ + +L + ++ I + + Sbjct: 1454 AHLLGGDKGPVLEIVSSRMRYMSIQLEKPVRIVCLASPVANAKEMAAWLGITSSNVFNFH 1513 Query: 253 IDTRTVE 259 + R V Sbjct: 1514 PNVRPVP 1520 >gi|308274532|emb|CBX31131.1| hypothetical protein N47_E46430 [uncultured Desulfobacterium sp.] Length = 632 Score = 41.1 bits (94), Expect = 0.29, Method: Composition-based stats. Identities = 25/166 (15%), Positives = 51/166 (30%), Gaps = 12/166 (7%) Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS-IICIANSETQLKNTLWAEVSKWLS 133 + I+ G G+GKT + A ++L + R + ++ I + E+ ++ Sbjct: 269 SDRPRLLIADGVGVGKT-IEAGLILRELQARRDIRSVLIICPRPLVTERKWMNEMKRFEE 327 Query: 134 MLPHRHWF-------EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 H EM + P ++ S+ + Y + + Sbjct: 328 RFTHLDGGALRYCINEMDLEGVWPEQHQRVIVPYSLLDEVLLYGSGSDGKRKRKKGLLDL 387 Query: 187 PHNTHGMAVFNDEASGTP--DIINKSILGFFTELNPNRFWIMTSNT 230 V DEA D + + FF + +T+ Sbjct: 388 DPPPRFDLVIVDEAHHIRNQDTFSHKAVRFFCDH-AEAVIFLTATP 432 >gi|317127827|ref|YP_004094109.1| type III restriction protein res subunit [Bacillus cellulosilyticus DSM 2522] gi|315472775|gb|ADU29378.1| type III restriction protein res subunit [Bacillus cellulosilyticus DSM 2522] Length = 890 Score = 41.1 bits (94), Expect = 0.29, Method: Composition-based stats. Identities = 35/260 (13%), Positives = 67/260 (25%), Gaps = 37/260 (14%) Query: 48 FSQP-HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 F P +Q E ++ +D H + + + A G GKT L +ML R Sbjct: 10 FCHPWRSYQQEVLDHLDHHLANKHLH---------LVAPPGSGKTVLGLEVML-----RL 55 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 G + +A + ++N + + + + L Sbjct: 56 GKPTLIVAPTLA-IRNQWVSRFVELFLQANEQPTWISTDLRNPKFITVTTYQGLHSIFQK 114 Query: 167 KHYTITCR----------TYSEERPDTFVGPH----NTHGMAVFNDEASGTPDIINKSIL 212 K T + + SE P + + DEA ++ L Sbjct: 115 KGEKETSQDVIDDEEMDESSSEVDPTDKELAQQKLIDEQFQTLILDEAHHLRTSWWRTTL 174 Query: 213 GFFTELNPNRFWIMTSNTRRLNG--WFYDIFN-----IPLEDWKRYQIDTRTVEGIDSGF 265 F +L+ +T+ G + + + D + Sbjct: 175 SFRNKLHDPTVVSLTATPPYDVGKSEWDKYMELCGPIDEEIEVAALVKEGDLCPHQDYVW 234 Query: 266 HEGIISRYGLDSDVARIEIL 285 + D E Sbjct: 235 MSEPSKKEKEPIDTFHQEAE 254 >gi|210134874|ref|YP_002301313.1| type II R-M system protein [Helicobacter pylori P12] gi|210132842|gb|ACJ07833.1| type II R-M system protein [Helicobacter pylori P12] Length = 662 Score = 41.1 bits (94), Expect = 0.29, Method: Composition-based stats. Identities = 30/198 (15%), Positives = 51/198 (25%), Gaps = 35/198 (17%) Query: 29 KNFVMRFFPWGIKG-------KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81 ++F+ W PL +P Q E +E + + N Sbjct: 145 EDFIYSRIDWEKFDPTKTEDEIPLCDKKRPRPHQTEAIERTKEYFSNPKNARGK-----L 199 Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML------ 135 I A G GKT + L ++ + +A S L T + Sbjct: 200 IMAC-GTGKTYTS----LKIMEALDPKITLFLAPSIALLSQTFREYAQEKSEPFYASIVC 254 Query: 136 ----------PHRHWFEMQSLSLHPSGWYAELLEQSMGI--DSKHYTITCRTYSEERPDT 183 + L + S ++L ++K + I S R Sbjct: 255 SDDKVGKSKDEDNDDIKFSELPIKASTRLEDILSVHEKAQKENKRFIIFSTYQSALRIKE 314 Query: 184 FVGPHNTHGMAVFNDEAS 201 + DEA Sbjct: 315 AQEAGLNGIDLIICDEAH 332 >gi|254431300|ref|ZP_05045003.1| magnesium chelatase ATPase subunit D [Cyanobium sp. PCC 7001] gi|197625753|gb|EDY38312.1| magnesium chelatase ATPase subunit D [Cyanobium sp. PCC 7001] Length = 714 Score = 41.1 bits (94), Expect = 0.29, Method: Composition-based stats. Identities = 32/228 (14%), Positives = 55/228 (24%), Gaps = 38/228 (16%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT----------LWAEVS 129 I+ GRG GK+ L + + P + ++ + ++ Q N E Sbjct: 48 VVIAGGRGTGKSVLARGL----HALLPPIDVLDLGSAPAQALNVDPRRPEDWDATIRERL 103 Query: 130 KWLSMLPHRHWFE-MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188 + L P + + + P+ + L + +T S + Sbjct: 104 QQLGADPSGSAADALLPTRVIPAPFVQVPLGITEDRLVGSVDVTASLASGQAVFQPGLLA 163 Query: 189 NTHGMAVFNDEASGTPDIINKSILGFFTELNPNR-------------FWIMTSNTRRLN- 234 H ++ DE + D I +L I T N Sbjct: 164 EAHRGVLYVDELNLLDDSITNLLLAAVGSGENRIEREGLSLSHPCRCLLIATYNPEEGAV 223 Query: 235 -GWFYDIFNIP--------LEDWKRYQIDTRTVEGIDSGFHEGIISRY 273 D F I LE F Sbjct: 224 RDHLLDRFAIALSANQVLDLEQRVAITRSALDHAESSDSFRGRWQEET 271 >gi|150396555|ref|YP_001327022.1| phage terminase [Sinorhizobium medicae WSM419] gi|150028070|gb|ABR60187.1| phage Terminase [Sinorhizobium medicae WSM419] Length = 491 Score = 41.1 bits (94), Expect = 0.29, Method: Composition-based stats. Identities = 32/283 (11%), Positives = 65/283 (22%), Gaps = 39/283 (13%) Query: 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136 + + +S R GKT L A ++L + + A + + Sbjct: 15 VRRAILSVARKNGKTALIAAIVLAHL----------VGPVSEINGEIYSAATDREQAGQV 64 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 + ++ L+ + Y + H + Sbjct: 65 FKFCRQIVEADPELDAASGGLITVVPSTKTLVCKSNGSFYRALSAEAG-TKHGLNPSVWI 123 Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSN----TRRL------------NGWFYDI 240 DE + D ++ I+ S + Sbjct: 124 YDELAQARDQELYEVMNTSQGARKEPLGIVISTQSPDPEHPLSKLVDDALAADDNTVLVH 183 Query: 241 FNIPLEDWKRYQIDTRTVEGI---------DSGFHEGIISRYGLDSDVARIEILGQFPQQ 291 +D D +R R L Q Q Sbjct: 184 LYCAKDDADIMDETAWRAANPALSDFRSVDDLRALAVQATRMKTLESSFRNLYLNQRVDQ 243 Query: 292 EVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334 IP + + + + + L + +G D++ G D T + Sbjct: 244 NS-PLIPRSEWKACQTGDTLR-LGEKIYLGLDLSAVG-DLTAL 283 >gi|226290188|gb|EEH45672.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18] Length = 1524 Score = 41.1 bits (94), Expect = 0.29, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 35/118 (29%), Gaps = 3/118 (2%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTT A ++ G S++ + + T + N L + L ++ Sbjct: 1009 GTGKTTTIAHII--RALVSQGKSVLLTSYTHTAVDNILLKIKDDNIRTLRLGATTKIHPD 1066 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + A + + + + + +N DEAS Sbjct: 1067 VQKFADLAATPKKTIEELRDIYENSLVVATTCLGINHP-IFNNRTFDYCIVDEASQIT 1123 >gi|225682750|gb|EEH21034.1| DNA-binding protein SMUBP-2 [Paracoccidioides brasiliensis Pb03] Length = 1492 Score = 41.1 bits (94), Expect = 0.29, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 35/118 (29%), Gaps = 3/118 (2%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTT A ++ G S++ + + T + N L + L ++ Sbjct: 977 GTGKTTTIAHII--RALVSQGKSVLLTSYTHTAVDNILLKIKDDNIRTLRLGATTKIHPD 1034 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + A + + + + + +N DEAS Sbjct: 1035 VQKFADLAATPKKTIEELRDIYENSLVVATTCLGINHP-IFNNRTFDYCIVDEASQIT 1091 >gi|222100309|ref|YP_002534877.1| ATP-dependent DNA helicase [Thermotoga neapolitana DSM 4359] gi|221572699|gb|ACM23511.1| ATP-dependent DNA helicase [Thermotoga neapolitana DSM 4359] Length = 649 Score = 41.1 bits (94), Expect = 0.29, Method: Composition-based stats. Identities = 46/304 (15%), Positives = 89/304 (29%), Gaps = 22/304 (7%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 E+ +P + L F+E +D V S +C + AG G GKT + + + +L++ Sbjct: 4 EYRIKPKKTDLSFLEDLDEEQRKAVVESEG---RCIVIAGPGSGKTRVITYKIAYLLANG 60 Query: 106 -PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 I+ + + + + L + + YA + Sbjct: 61 VDPSRILLVTFTRAAAREMVERAKMVTGRELSEMLAGTFHHVCNYFLRKYAPYVGLDRNY 120 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224 + R P ++ L R Sbjct: 121 SILDREDSESLMRHARSKFLERKGREERKNF------PQPSVLMSIYSYMRNTLKSLRES 174 Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 I+ N + F D E + Y+ + R+ +D + R + R Sbjct: 175 IIVKNPK-----FLDFKEEIAEIFDLYEQEKRSQNVVDYEDLLFFVYRLFEEHREIRDRE 229 Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEH 344 +F V+ F NY++ M ++ G D + RG E+ Sbjct: 230 AERFLWVLVDEFQDTNYVQYRMIEHLSSRHGN--VLAV-----GDDAQSIYSFRGARYEN 282 Query: 345 IFDW 348 + D+ Sbjct: 283 VEDF 286 >gi|269124787|ref|YP_003298157.1| DEAD/DEAH box helicase domain-containing protein [Thermomonospora curvata DSM 43183] gi|268309745|gb|ACY96119.1| DEAD/DEAH box helicase domain protein [Thermomonospora curvata DSM 43183] Length = 562 Score = 41.1 bits (94), Expect = 0.29, Method: Composition-based stats. Identities = 25/204 (12%), Positives = 45/204 (22%), Gaps = 28/204 (13%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI---S 103 + +P Q E + H + + A G GKT A +L + Sbjct: 29 GYEEPTPIQREAI----PHLLAGRDLLG--------QAATGTGKTAAFALPILHRTPRPA 76 Query: 104 TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163 P + + + ++ + R P A + Q Sbjct: 77 DEPDPGALVLVPTRELAVQVA-DAFHRYGREMGVRVL---------PVYGGAPIGRQIQV 126 Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFF--TELNP 220 + + V DEA + I T Sbjct: 127 LKRGVDVVVATPGRALDLIDRDVLRLARLRTVVLDEADEMLDMGFAEDIEAILAQTPPQR 186 Query: 221 NRFWIMTSNTRRLNGWFYDIFNIP 244 + R++G P Sbjct: 187 QTVLFSATVPPRIDGIARRHLREP 210 >gi|221117600|ref|XP_002163251.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Hydra magnipapillata] Length = 790 Score = 41.1 bits (94), Expect = 0.29, Method: Composition-based stats. Identities = 37/300 (12%), Positives = 82/300 (27%), Gaps = 33/300 (11%) Query: 6 STDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKG-KPLEHFSQPHRWQLEFMEAVDV 64 + L ++L +M A+ +F F + G ++S+P Q + + Sbjct: 253 PAVKNLREKLGLKVMGADPARPAISFGHFGFDDHLMGVIRSSNYSKPTPIQSQAV----- 307 Query: 65 HCHSNVNNSNPTIFKCAISAGR-GIGKTTLNAWMMLWLISTRP------GMSIICIANSE 117 + I R G GKT W ML I +P G + A + Sbjct: 308 --------PVALSGRDIIGIARTGSGKTAAFVWPMLVHIMAQPVLKEGDGPIALICAPT- 358 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177 E+ + ++ + + + +L + EQ+ G+ + C Sbjct: 359 --------RELCQQIN-SECKRFGKCYNLRVIACYGGGSKWEQTKGLQQGAEIVVCTPGR 409 Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 + + DEA D+ + + + + Sbjct: 410 LIDLIKAKATNLLRVTYLVFDEADRMFDMGFEPQVRSIANNVRPDRQCLLFSATMKKKVE 469 Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297 + +I + + + E + S + + + +F Sbjct: 470 WLCRDILSDPIRIVVGELGEANEDIVQAVEVMKSPQQKWNWLLSHIV--EFTSGGSVLIF 527 >gi|150865976|ref|XP_001385416.2| nucleotide excision repair protein [Scheffersomyces stipitis CBS 6054] gi|149387232|gb|ABN67387.2| nucleotide excision repair protein [Scheffersomyces stipitis CBS 6054] Length = 701 Score = 41.1 bits (94), Expect = 0.29, Method: Composition-based stats. Identities = 39/344 (11%), Positives = 89/344 (25%), Gaps = 40/344 (11%) Query: 28 FKNFVMRFFPW--GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAG 85 F + FP+ ++ P+E QP ++ + + + ++ Sbjct: 57 FHPHLKDVFPYLASLERIPVERSPQPPSMNIKLLPFQLEGLNWLKKQEDGEFQGGILADE 116 Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 G+GKT + ++ RP + + L +L + Sbjct: 117 MGMGKTIQTIGLFTSDLTKRPNLVVGPTVALMQWKNEIEKHTEPGLLKVLLYHGANRTTD 176 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 + + + + S + H V DEA D Sbjct: 177 VKELSKYDVILTSYSVLESVYRKENHGFKRKSGLVKEK-SALHAVEFYRVILDEAHNIKD 235 Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRL-----------------NGWFYDIFNIPLEDW 248 + + R W ++ + + +F + ++W Sbjct: 236 RTSGTAKAANNLRCKKR-WCLSGTPLQNRIGEMYSLIRFMKMEPFHQYFCTKCDCKSDEW 294 Query: 249 KRYQIDTRT--------VEGIDSGFHEGIISRYGLDSD----VARIEILGQF-------P 289 K + F I ++G++ D I +L Q Sbjct: 295 KFSDWRHCDQCGHAPMVHTNFFNHFMLKNIQKFGIEGDGLVSFQNIRLLLQNVMLRRTKI 354 Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTV 333 ++ + +P +E R ++ + D + D Sbjct: 355 ERADDLGLPPRIVEIRRDRFNEEEKDLYTSLYSDSKRKFNDYVA 398 >gi|149178000|ref|ZP_01856597.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797] gi|148843193|gb|EDL57559.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797] Length = 418 Score = 41.1 bits (94), Expect = 0.29, Method: Composition-based stats. Identities = 37/311 (11%), Positives = 79/311 (25%), Gaps = 44/311 (14%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAI-------SAGRGIGKTTLNAWMMLWLI-STRPG 107 + ++ + + + + A+ A G GKT + +L + RPG Sbjct: 24 EKILKDLSKAGYETPSPIQSELIPIAVTGQDCIGQARTGTGKTAAFSLPVLQQLDLRRPG 83 Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 M + +A + +L + AE+ K + +SLS+ + Q + Sbjct: 84 MQALILAPT-RELSEQVAAEIRKLCTS---------KSLSIAVLVGGKPVRPQENQLKKG 133 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK-SILGFF--TELNPNRFW 224 V DEA DI + I Sbjct: 134 AQIAVGTPGRVIDHINRGNLQLGTLGFVVLDEADRMLDIGFRPDIEKILRKCPEKRQTLL 193 Query: 225 IMTSNTRRLNGWFYDIFNIP-----LEDWKRY----QIDTRTVEGIDSGFHEGIISRYGL 275 + + + P ED Q ++ + Sbjct: 194 LSATLPPPVERLANRYMQNPVMIDLSEDKVSVDAIDQYYITVDPDRKIKLLSRLL--FQE 251 Query: 276 DSDVARIEILGQFPQQEVNNFIPHNYIE-EAMSREAIDDLYAPL-----------IMGCD 323 + + +++ E A+ + + ++ D Sbjct: 252 RPKQTIVFTRTKRGADKLDRIFSKKLKEVAAIHGDLPQPKRDRVLKKFREGKIRLLIATD 311 Query: 324 IAGEGGDKTVV 334 + G G D + + Sbjct: 312 VMGRGIDVSGI 322 >gi|226360800|ref|YP_002778578.1| hypothetical protein ROP_13860 [Rhodococcus opacus B4] gi|226239285|dbj|BAH49633.1| hypothetical protein [Rhodococcus opacus B4] Length = 549 Score = 41.1 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 38/142 (26%), Gaps = 5/142 (3%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + + G G GKT L L G + I S L + L + W R Sbjct: 221 RVEVRGGAGSGKTFLAVEKARRLAKQ--GQRVALICYS-HGLASYLERLTATW--SYKER 275 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + + +L E ++S+ P AV D Sbjct: 276 PAYVGEFHALGQLWGAPEGPDESIRNTDTVQFWEHDLPRHMAELASKLPLRERFDAVVVD 335 Query: 199 EASGTPDIINKSILGFFTELNP 220 EA D +L + Sbjct: 336 EAQDFADDWWGPLLAALRDEES 357 >gi|260587728|ref|ZP_05853641.1| putative helicase [Blautia hansenii DSM 20583] gi|331083983|ref|ZP_08333090.1| hypothetical protein HMPREF0992_02014 [Lachnospiraceae bacterium 6_1_63FAA] gi|260541993|gb|EEX22562.1| putative helicase [Blautia hansenii DSM 20583] gi|330402345|gb|EGG81915.1| hypothetical protein HMPREF0992_02014 [Lachnospiraceae bacterium 6_1_63FAA] Length = 886 Score = 41.1 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 33/257 (12%), Positives = 61/257 (23%), Gaps = 49/257 (19%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 R+Q + D + K I A G GKTTL + R + Sbjct: 15 RRYQERVLNFSDAYLSDK---------KIHIVAAPGAGKTTLG-----IELIRRTQKPCL 60 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFE-MQSLSLHPSGWYAELLEQSMGIDSKHYT 170 ++ + E +WL + E + + + L S+ + Sbjct: 61 ILSP------RIVIRE--QWLERIKDGFLNERLSPEDILSNDMKNPKLITSITYQTLFCG 112 Query: 171 IT-----CRTYSEERPDTFVGPHNT--------HGMAVFNDEASGTPDIINKSILGFFTE 217 +T E + H + DE + K++ F E Sbjct: 113 MTRYAGMTEEEETENQEAMDFSHFELLRTVKEAGIKVICLDECHHLKNEWWKALEDFMKE 172 Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277 + +T+ E + E + D Sbjct: 173 MGEVTVISLTATPPYDATPVQW------ERYCNM-CGPVDEEITVPELVKENSLCPHQD- 224 Query: 278 DVARIEILGQFPQQEVN 294 + +P E Sbjct: 225 -----FVYFNYPTGEEQ 236 >gi|91775571|ref|YP_545327.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus KT] gi|91709558|gb|ABE49486.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus KT] Length = 1053 Score = 41.1 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 22/198 (11%), Positives = 44/198 (22%), Gaps = 17/198 (8%) Query: 13 QELHEMLMHAECVLSFK--NFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70 Q + L ++ + FV G + L P Q + Sbjct: 261 QMVENSLWTVTRAVNSRVTRFVRELVSRGRGDRALFEVLPP---QRRTLAE--------Q 309 Query: 71 NNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS--IICIANSETQLKNTLWAEV 128 + +S GKT + + ML ++ ++ +A S + Sbjct: 310 GLLGSSRRAVVVSLPTSSGKTLIAQFRMLQALNQFDDQKGWVVYLAPSRALVNQITRQLR 369 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188 + + + + T + + Sbjct: 370 RDFQPLGVVVERVSPALEVNGIEAGLLAESQDDTQF--RVLVATPEKFDLMLRQGWEEKI 427 Query: 189 NTHGMAVFNDEASGTPDI 206 V DEA D Sbjct: 428 GRPLTLVVVDEAHTIQDK 445 >gi|331250710|ref|XP_003337961.1| hypothetical protein PGTG_19538 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309316951|gb|EFP93542.1| hypothetical protein PGTG_19538 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1489 Score = 41.1 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 46/171 (26%), Gaps = 42/171 (24%) Query: 44 PLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS 103 P + P +Q E +E I A G GKT + ++ W+ + Sbjct: 15 PPDTMKIPRLYQAELLEE-------------AKKRNIIIRADTGTGKTFVALSLITWIAA 61 Query: 104 T----RPGMSI-ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 I +A + + K ++ + ++Q + W++EL Sbjct: 62 QSPANHDDHRIQAFLAPTRPLAHQQA-EYIQKHCTLRVKAYTGDLQPELWNIDKWHSELN 120 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209 E + + + + DEA Sbjct: 121 EVDVIVST-----------------------AQVSLLIFDEAHHCRKNHIY 148 >gi|331236934|ref|XP_003331125.1| hypothetical protein PGTG_13088 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309310115|gb|EFP86706.1| hypothetical protein PGTG_13088 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1465 Score = 41.1 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 46/171 (26%), Gaps = 42/171 (24%) Query: 44 PLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS 103 P + P +Q E +E I A G GKT + ++ W+ + Sbjct: 15 PPDTMKIPRLYQAELLEE-------------AKKRNIIIRADTGTGKTFVALSLITWIAA 61 Query: 104 T----RPGMSI-ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 I +A + + K ++ + ++Q + W++EL Sbjct: 62 QSPANHDDHRIQAFLAPTRPLAHQQA-EYIQKHCTLRVKAYTGDLQPELWNIDKWHSELN 120 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209 E + + + + DEA Sbjct: 121 EVDVIVST-----------------------AQVSLLIFDEAHHCRKNHIY 148 >gi|241894907|ref|ZP_04782203.1| terminase large subunit [Weissella paramesenteroides ATCC 33313] gi|241871915|gb|EER75666.1| terminase large subunit [Weissella paramesenteroides ATCC 33313] Length = 604 Score = 41.1 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 34/306 (11%), Positives = 78/306 (25%), Gaps = 29/306 (9%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMS 109 WQ + + + GR GKTT+ + + +++ G Sbjct: 113 QPWQHFVLGNIFGWVDKETGLRRFNEGLIFV--GRKNGKTTIQSGLAIYMAGFDGENGAE 170 Query: 110 IICIANSETQLKNTLWAEVSKW--LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 + +AN + Q + ++ L R + ++ +L S SK Sbjct: 171 VYALANMKAQAGRLVDETIAMIDASEFLKKRFKTTKSMHKVEHQRTHSTILSLSAEKHSK 230 Query: 168 HYTITCRTYSEERPDTFVGP----------HNTHGMAVFNDEASGTPDIINKSILGFFTE 217 T +E + + V+ A D Sbjct: 231 DGFNTSFAVFDEIHEYKDYELIEVMRRSMGQRMQPLTVYISTAGTVLDGPMTDFF----R 286 Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277 N + ++Y +++ ++ + + ++S Y D Sbjct: 287 SGKETLEQYDENLNERS-FYYLAKIDDVKEADNPEMWIKANPNLPMMDGLSLLSNYKKDM 345 Query: 278 DVARIEIL------GQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLIMGCDIAGEGGD 330 + F + + + I + + + G D++ D Sbjct: 346 RTPQQRRDWITKQFNLFSESGEQSLLDAETILANNDEIDESELAGIHPVAGFDLSDT-ED 404 Query: 331 KTVVVF 336 T Sbjct: 405 FTAAAL 410 >gi|38638456|ref|NP_943831.1| gp53 [Mycobacterium phage PG1] gi|33334071|gb|AAQ12130.1| gp53 [Mycobacterium phage PG1] Length = 559 Score = 41.1 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 27/264 (10%), Positives = 66/264 (25%), Gaps = 28/264 (10%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q E +EA++ H V + + G GK+T+ + R ++ Sbjct: 2 RPYQREAVEAIESHWSQGVT-------RVGVVLPTGTGKSTVIGRTAVNGYQNREP--VL 52 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 +A+ + + P + + A ++ ++ + + Sbjct: 53 MVAHRGELIDQMAGTIF----EVDPSIPRSHVGIVRAEMDDHSAPIVVATLQTLATAHRR 108 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 + V G E G D + + + + Sbjct: 109 EAVGFRRRILWDEVHHAGAEGFHTTFTELGGYTDALFAGFTATMRRDDKGK------SPV 162 Query: 232 RLNGWFYDIFNIPLEDW-----KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 L + W + TV + + + + G + L Sbjct: 163 GLGDVIEKVVYEKDILWAIDSGYLVRPRGLTVRINNLNALDDVRTVAGD----FQQSDLA 218 Query: 287 QFPQQEVNNFIPHNYIEEAMSREA 310 + + + + A R Sbjct: 219 EVMEAATEYVVDAIKLHAADRRPI 242 >gi|311696294|gb|ADP99167.1| UvrD/REP helicase [marine bacterium HP15] Length = 721 Score = 41.1 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 41/282 (14%), Positives = 81/282 (28%), Gaps = 45/282 (15%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + AG G GKT + + WL++ P I+ + + K + + + + + Sbjct: 25 LLVLAGAGSGKTRVLVHRIAWLMTVDRVPPTGILAVTFTNKAAKEMRYR-IEQMMDIPAR 83 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF- 196 WF G + + + + K P+ F + + + Sbjct: 84 GLWF----------GTFHGIAHRLLRSHWK---------DAGLPENFQVLDSDDQLRLIK 124 Query: 197 -------NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249 DE S P + + + I +I L+ ++ Sbjct: 125 RVMRENQIDE-SKWPPKQAQWFISSQKDEGLRVDHI-------QENPGDHFLSIMLKIYR 176 Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309 +Y+ + +D G L +F V+ F N I+ A Sbjct: 177 QYEKLCQQGGLVDFGELLLRSHELWLHRPELLAHYQSRFQHILVDEFQDTNTIQYA---W 233 Query: 310 AIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 + M G D + RG +E+I + Sbjct: 234 LQVLASNRVPMTV----VGDDDQSIYGWRGAKVENIQQYQRD 271 >gi|331247629|ref|XP_003336442.1| fanconi anemia complementation group M [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309315432|gb|EFP92023.1| fanconi anemia complementation group M [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1587 Score = 41.1 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 22/158 (13%), Positives = 47/158 (29%), Gaps = 11/158 (6%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 C +S G+GKT + A +ML P +I +A + ++ + E ++ +P Sbjct: 280 NCLVSLPTGLGKTFIAAVVMLNFYRWYPRGKVIFLAPTRPLVQQQI--EACHSIAGIPSV 337 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + + A ++ + + R S + + D Sbjct: 338 DCVSLTGTTSATKRAVAWENKRVIFATPQTVANDLRRGS---------LRPEDIICLVVD 388 Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236 EA I+ F ++ + Sbjct: 389 EAHRATGAYAYCIVVKLLMRFNPHFRVLALTATPGSDP 426 >gi|260579621|ref|ZP_05847490.1| helicase [Corynebacterium jeikeium ATCC 43734] gi|258602262|gb|EEW15570.1| helicase [Corynebacterium jeikeium ATCC 43734] Length = 967 Score = 41.1 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 25/186 (13%), Positives = 47/186 (25%), Gaps = 32/186 (17%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P+ Q E +E + + + + G GKT L A + + Sbjct: 216 PNAMQSEALEKI-------KQIRESNARRAVVISATGTGKTILAALSV----REAKPERM 264 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + I + Q+ + E K L + S + Sbjct: 265 LFIVH-REQILDKAILEFQKVLEAPAEDFGKLVGSTRQQDRRYV---------------- 307 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 S R + + DE ++ L P +T+ Sbjct: 308 -FASIQSLSREENLQDFDPAAFDFIIVDE---VHRAGAETYLRTLEHFQPAFLLGLTATP 363 Query: 231 RRLNGW 236 R +G+ Sbjct: 364 ERTDGF 369 >gi|156554507|ref|XP_001605046.1| PREDICTED: similar to ENSANGP00000013875 [Nasonia vitripennis] Length = 2105 Score = 41.1 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 20/176 (11%), Positives = 48/176 (27%), Gaps = 23/176 (13%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L F+ + Q + + H + A G GKT M+ + + Sbjct: 1269 LYKFTHFNPIQTQIFHCLYHTDH-----------NVLLGAPTGSGKTIAAEIAMMRVFRS 1317 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS-MG 163 P ++ IA + ++ + W L + + L+ + + + Sbjct: 1318 EPDRKVVYIAPLKALVRERM----KDWTKRLGGQLGKNVVELTGDVTPDVKVISTSDVIV 1373 Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219 + + R++ + DE + + + N Sbjct: 1374 TTPEKWDGISRSWQTRNYV-------QKVALIIIDEIHLLGEDRGPVLEVIVSRTN 1422 >gi|59711751|ref|YP_204527.1| DNA and RNA helicase [Vibrio fischeri ES114] gi|59479852|gb|AAW85639.1| DNA and RNA helicase [Vibrio fischeri ES114] Length = 431 Score = 41.1 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 25/272 (9%), Positives = 70/272 (25%), Gaps = 38/272 (13%) Query: 87 GIGKTTLNAWMMLWLIST------RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 G GKT A ++ + R + +A + + + Sbjct: 48 GTGKTAAFALPVIQQLLDSKKSATRRTARALILAPTRELAEQIAVNI----------ADY 97 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + SL++ ++ Q ++ + + + + DEA Sbjct: 98 IKYTSLTVTSVFGGKKMSSQERALEPGVDILVATPGRLQEHIEEENVSIANLEFLVFDEA 157 Query: 201 S-GTPDIINKSILG-FFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 +I + + ++ + + +T Sbjct: 158 DRMLDMGFVNAIRNIMMEVNTSPQIMLFSATSSAQMNKLASDILRKPKRISVDPENTTAS 217 Query: 259 EGIDSGFHEGIISRYGLDSDV-----ARIEILGQFPQQEVNNFI-------------PHN 300 + + L S++ + ++ ++ N + + Sbjct: 218 TIAHVVYPVDEERKTELLSELIGRKNWQQVLVFVNYKETANEIVKELKLDGIKAVLCHGD 277 Query: 301 YIEEAMSREAID--DLYAPLIMGCDIAGEGGD 330 + A R + + A +++ D+A G D Sbjct: 278 KAQSARRRALEEFKEGKARVMVATDVAARGLD 309 >gi|315618351|gb|EFU98939.1| type I site-specific deoxyribonuclease, HsdR family protein [Escherichia coli 3431] Length = 1028 Score = 41.1 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 21/189 (11%), Positives = 53/189 (28%), Gaps = 7/189 (3%) Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICI---ANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 +G GK+ W+ W+ P ++ + + Q+++ Sbjct: 275 QGSGKSLTMVWLAKWIRENVPNSRVLIVTDRTELDEQIESVFMGVNEDIYRTSSGNDLIA 334 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 + P + + + +++ T +E + + VF DE Sbjct: 335 TLNHPN-PWLICSLVHKFGRRSEAEDNAATDAFITELQQSLTKTFRAKGDLFVFVDECH- 392 Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262 + + T + P+ +I + T + + Y+ D +G+ Sbjct: 393 --RTQSGKLHNAMTAILPDALFIGFTGTPLMKKDKKKSVEVFGPYIHTYKFDEAVADGVV 450 Query: 263 SGFHEGIIS 271 Sbjct: 451 LDLRYEARD 459 >gi|282856135|ref|ZP_06265419.1| phage terminase large subunit (GpA) [Pyramidobacter piscolens W5455] gi|282586062|gb|EFB91346.1| phage terminase large subunit (GpA) [Pyramidobacter piscolens W5455] Length = 608 Score = 41.1 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 31/242 (12%), Positives = 70/242 (28%), Gaps = 35/242 (14%) Query: 10 KLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSN 69 +EL ++ + +S W + + L+ S P + + Sbjct: 24 WTPRELRALVPPKKIDVS---------EWADRNRVLDAASSPMPGPWKTARTP--YLREI 72 Query: 70 VNNSNPTIFKCAISA-GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128 ++N K + G +GK+ ++ ++I PG +++ ++ K+ Sbjct: 73 LDNFRDRRLKKMVLCFGTQLGKSECILNLIGYVIDQDPGATLLVY-PTDQLAKSI----- 126 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188 +R + + W + E Y ++ Sbjct: 127 ------SKNRIAPMLINSPALLEKWNIDDSEILELQLQGMYLALV------GANSPSKLA 174 Query: 189 NTHGMAVFNDEASGTPDIINKSILGF-----FTELNPNRFWIMTSNTRRLNGWFYDIFNI 243 + +F DE PD T+ N +M S+ ++G + F Sbjct: 175 SRPIRYLFYDEIDKFPDRSGGDANPIDLAAERTKNFANSRQVMASSPTVVSGAIWQNFLA 234 Query: 244 PL 245 Sbjct: 235 AR 236 >gi|260576816|ref|ZP_05844800.1| ATP-dependent DNA helicase, RecQ family [Rhodobacter sp. SW2] gi|259020959|gb|EEW24271.1| ATP-dependent DNA helicase, RecQ family [Rhodobacter sp. SW2] Length = 1415 Score = 41.1 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 51/218 (23%), Gaps = 19/218 (8%) Query: 10 KLEQELHEMLMHAECVLSFKNFVMRFFP--WGIK-GKPLEHFSQPHRWQLEFMEAVDVHC 66 E L M + F W G + + W ++A+D Sbjct: 993 YAETGLEAMDQAQRLAGDYFVLDRDAFLRRWLPGRGTEIRRQTTGASW-RTIVDALDNPA 1051 Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS-TRPGMSIICIANSETQLKNTLW 125 + + + + AG G GKT + + +LI R I + Sbjct: 1052 QAEIVRDDREQTNVLVLAGPGSGKTRVLVHRIAYLIRVKREDPRGILVLTYNRHAA---- 1107 Query: 126 AEVSKWLSMLPHRHWF-----EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 AE+ + L +L +L++ G + Sbjct: 1108 AEIRERLRLLIGEDAAWVTVSTCHALAMRLVGASFAGDGDGPRDFDGIVMQAVALLRGDG 1167 Query: 181 PDTFVGPHNTHGMA-----VFNDEASGTPDIINKSILG 213 + + DE I Sbjct: 1168 LSRPEAEALRDTLIQGYRWLLVDEYQDIGPEEYALISA 1205 >gi|256023437|ref|ZP_05437302.1| predicted type I site-specific deoxyribonuclease, HsdR family protein [Escherichia sp. 4_1_40B] Length = 1031 Score = 41.1 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 21/189 (11%), Positives = 53/189 (28%), Gaps = 7/189 (3%) Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICI---ANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 +G GK+ W+ W+ P ++ + + Q+++ Sbjct: 278 QGSGKSLTMVWLAKWIRENVPNSRVLIVTDRTELDEQIESVFMGVNEDIYRTSSGNDLIA 337 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 + P + + + +++ T +E + + VF DE Sbjct: 338 TLNHPN-PWLICSLVHKFGRRSEAEDNAATDAFITELQQSLTKTFRAKGDLFVFVDECH- 395 Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262 + + T + P+ +I + T + + Y+ D +G+ Sbjct: 396 --RTQSGKLHNAMTAILPDALFIGFTGTPLMKKDKKKSVEVFGPYIHTYKFDEAVADGVV 453 Query: 263 SGFHEGIIS 271 Sbjct: 454 LDLRYEARD 462 >gi|149634448|ref|XP_001507983.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 [Ornithorhynchus anatinus] Length = 729 Score = 41.1 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 24/174 (13%), Positives = 47/174 (27%), Gaps = 17/174 (9%) Query: 77 IFKCAISAGRGIGKTTLNAWMMLW-LISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 + + A G GKT + + + L LI P I+ +A + E++ + + Sbjct: 6 VSNLIVQAKSGTGKTCVFSTVALDSLILENPSTQILVLAPT---------REIAVQIHSV 56 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 +M+ L H L + + K + ++ + Sbjct: 57 ITAIGIKMEGLECHVFIGGTPLSQDKSRL-KKCHIAVGSPGRIKQLIELDYLNTASIRLF 115 Query: 196 FNDEASGTPD-----IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244 DEA + I N + + L P Sbjct: 116 ILDEADKLLEEGSFQEQINWIYSSL-PANKQMLAVSATYPEFLANALTRYMRDP 168 >gi|127513705|ref|YP_001094902.1| DEAD/DEAH box helicase domain-containing protein [Shewanella loihica PV-4] gi|126639000|gb|ABO24643.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4] Length = 451 Score = 41.1 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 30/280 (10%), Positives = 73/280 (26%), Gaps = 41/280 (14%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGM----SIICIANSETQLKNTLWAEVSKWLSMLPHR 138 A G GKT ++++L + +P S + + + +S++ Sbjct: 44 CAQTGTGKTAAFSFVLLQRLLNQPRAIGQLSALILTPTRELAIQVA-DSISRY------S 96 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + E+ +L+++ A + Q + + + D Sbjct: 97 QFTELTTLAVY---GGANINPQRKALARGVDILVATPGRLFDLLGQHDLSLETVDQLIVD 153 Query: 199 EASGTPDIIN----KSILGFFTELNPNRFWIMTSNT-------RRLNGWFYDIFNIPLED 247 EA D+ + + + T + L+ + Sbjct: 154 EADRMLDMGFVRDIERTKRLLCVSHSTMLFSATFTPEVKALATKMLDNPEWINVTSASSG 213 Query: 248 WKRYQIDTRTVEGIDSGFHEGIIS-----------RYGLDSDVARIEILGQFPQQEVNNF 296 + Q + +I ++ E+ N Sbjct: 214 PQIEQKIYPLDARRKAELLAELIGRNNWQQVLVFVNTKESAERLHRELK---LDGIKNAV 270 Query: 297 IPHNYIEEAMSREAIDDLYA--PLIMGCDIAGEGGDKTVV 334 + + A +R +++ D+A G D T + Sbjct: 271 FHGDKTQGARNRALEQFKAGELRVLVATDVAARGLDITAL 310 >gi|312132702|ref|YP_004000041.1| superfamily ii RNA helicase [Bifidobacterium longum subsp. longum BBMN68] gi|311773662|gb|ADQ03150.1| Superfamily II RNA helicase [Bifidobacterium longum subsp. longum BBMN68] Length = 863 Score = 41.1 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 36/263 (13%), Positives = 64/263 (24%), Gaps = 26/263 (9%) Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 + N++ ++A G GKT + A ++L R + + Sbjct: 48 DDFQTEANDALEAGSNVLVAAPTGAGKT-VVADFAIYLAQER-NVKAFYTTPIKALSNQK 105 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 V + P + S++ + + + ER T Sbjct: 106 YHDLVDVY---GPDKVGLLTGDTSINSEADIVVMTTEVLRN-----------MLYERSTT 151 Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM-TSNTRRLNGWFYDIFN 242 V DE D + P I+ S T F + Sbjct: 152 LNALR-----YVILDEVHYLADRFRGPVWEEVIIHLPKTVKIVGLSATVSNVEDFSNWIA 206 Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH--N 300 D K + R V + D+ R + G+ + I Sbjct: 207 SVRGDTKLVISEHRPVPLEQHVIVQADEHTEPEVLDLYRRDGNGEQTTKLNAELINRLDQ 266 Query: 301 YIEEAMSREAIDDLYAPLIMGCD 323 +A R + G D Sbjct: 267 LDRKAARRRGEERPDKRK--GFD 287 >gi|307256343|ref|ZP_07538126.1| RNA polymerase-associated protein rapA [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865169|gb|EFM97069.1| RNA polymerase-associated protein rapA [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 969 Score = 41.1 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 29/261 (11%), Positives = 65/261 (24%), Gaps = 19/261 (7%) Query: 33 MRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTI-FKCAISAGRGIGKT 91 + F P R ++ H + + ++ G+GKT Sbjct: 123 RFALRYRALQHQQAQFQSPLRGMRGIRASLIPHQLHIAKEVGQRVAPRVLLADEVGLGKT 182 Query: 92 TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151 ++ + + ++ + Q + W V F+ + S Sbjct: 183 IEAGMILQQQLFSGRVERVLVLVPESLQHQ---W-LVEMLRRFNLKFSLFDEERCSDFDK 238 Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211 DS+ I + E P+ +H + DEA Sbjct: 239 ADEDGNDVSENPFDSEALVIASIDWLESSPNRAKQVLASHWDMLIVDEAHHL---EWSEN 295 Query: 212 LGFF-------TELNPNRFWIMTSNTR--RLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262 ++T+ F + + + + Y ++ E D Sbjct: 296 EPSVGYQFVERLSKQTPAVLLLTATPEQLGQESHFARLALLDADRF--YDYNSFVAEQKD 353 Query: 263 SGFHEGIISRYGLDSDVARIE 283 ++ D ++ E Sbjct: 354 YKPVADAVATLLNDKPLSNEE 374 >gi|229051372|ref|ZP_04194877.1| Tail tape measure protein [Bacillus cereus AH676] gi|228721941|gb|EEL73381.1| Tail tape measure protein [Bacillus cereus AH676] Length = 1586 Score = 41.1 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 27/215 (12%), Positives = 61/215 (28%), Gaps = 26/215 (12%) Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 +T W E+S W +P + ++ S W+ E EQ++ ++ T+ P Sbjct: 1043 DTWWTEMSNWFDSIPDKIKTKLIGWKDAISQWFDEQNEQNIIFYNQ-LWEAMSTWFSSIP 1101 Query: 182 DTFVGPHNTHGMAV--FNDEASGT----PDIINKSILGFFTE------LNPNRFWIMTSN 229 + + G A+ + DE + SI ++T +W S Sbjct: 1102 EKLRTKLSEWGTAISTWFDETVTLWGENLEKWWNSIAAWWTALPERMWEQLELWWTSIST 1161 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG-----------FHEGIISRYGLDSD 278 + W T+ + + +R+G + + Sbjct: 1162 WFDQTTT--RWGENLEKWWNSIVTWWTTLPERMWEQLELWWTSISTWFDQTTTRWGENLE 1219 Query: 279 VARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 I + + +++ + Sbjct: 1220 KWWNSISTWWTTLPDRMWEKLELWWNSIATWFDET 1254 >gi|170084045|ref|XP_001873246.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82] gi|164650798|gb|EDR15038.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82] Length = 1573 Score = 41.1 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 25/276 (9%), Positives = 64/276 (23%), Gaps = 28/276 (10%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 +QL+ + + +N G+GKT + ++ +L Sbjct: 738 EYQLKGLNWLATLYEQGINGILADEM--------GLGKTVQSISLLAYLAEAHDIWGPFL 789 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 + + L N E+++++ L ++ + ++ + + Sbjct: 790 VVAPASTLHN-WQQELTRFVPNLKALPYWGNVKDRTTLRKF---WSKKEISYNQDAPFHV 845 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232 T + + DEA + ++T Sbjct: 846 LITSYQLVTQDQQYFQRVKWQYMILDEAQNIKNSA-SVRWKTLLGFQCRNRLLLTGTP-- 902 Query: 233 LNGWFYDIFNIPLEDW---KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 I N E W + + I + E Sbjct: 903 -------IQNSMQELWALLHFIMPSLFDSHDEFNEWFSKDIENAAENKGSKLNEHQ---L 952 Query: 290 QQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325 ++ P + + + D++ Sbjct: 953 RRLHMILKPFMLRRVKKHVQNELSEKIEIDIYVDLS 988 >gi|320665547|gb|EFX32593.1| Helicase family protein [Escherichia coli O157:H7 str. LSU-61] Length = 952 Score = 41.1 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 29/249 (11%), Positives = 60/249 (24%), Gaps = 40/249 (16%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 + I+ G+GKT ++ LI G I+ +A + E Sbjct: 122 PRQRILIADAVGLGKTLEAGILVSELIRRGRGKRILVLAVK--SMLTQFQKEF------- 172 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH---NTHG 192 F + L +G + HY + H N Sbjct: 173 --WSRFAIPLTRLDSAGLQKVRNRIPTNHNPFHYFDKTIISIDTLKQDIEYRHHLENAWW 230 Query: 193 MAVFNDEASGTPDIINKSIL----GFFTELNPNRFWIMTS----------------NTRR 232 + DEA + S+ + + + + Sbjct: 231 DIIVIDEAHNVAERGTSSLRSKLAKLLAGRSDTLIMLSATPHDGKAESFASLMNMLDPTA 290 Query: 233 LNGW-FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG-----IISRYGLDSDVARIEILG 286 + Y+ + ++ + + + F E G + + R + Sbjct: 291 IANPKEYEYADFADKNLVVRRFKKDVKDQMSGEFPERNIVKLTRLASGAEEEAYRRLVES 350 Query: 287 QFPQQEVNN 295 QF + Sbjct: 351 QFRDDDDEQ 359 >gi|320660619|gb|EFX28080.1| Helicase family protein [Escherichia coli O55:H7 str. USDA 5905] Length = 952 Score = 41.1 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 29/249 (11%), Positives = 60/249 (24%), Gaps = 40/249 (16%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 + I+ G+GKT ++ LI G I+ +A + E Sbjct: 122 PRQRILIADAVGLGKTLEAGILVSELIRRGRGKRILVLAVK--SMLTQFQKEF------- 172 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH---NTHG 192 F + L +G + HY + H N Sbjct: 173 --WSRFAIPLTRLDSAGLQKVRNRIPTNHNPFHYFDKTIISIDTLKQDIEYRHHLENAWW 230 Query: 193 MAVFNDEASGTPDIINKSIL----GFFTELNPNRFWIMTS----------------NTRR 232 + DEA + S+ + + + + Sbjct: 231 DIIVIDEAHNVAERGTSSLRSKLAKLLAGRSDTLIMLSATPHDGKAESFASLMNMLDPTA 290 Query: 233 LNGW-FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG-----IISRYGLDSDVARIEILG 286 + Y+ + ++ + + + F E G + + R + Sbjct: 291 IANPKEYEYADFADKNLVVRRFKKDVKDQMSGEFPERNIVKLTRLASGAEEEAYRRLVES 350 Query: 287 QFPQQEVNN 295 QF + Sbjct: 351 QFRDDDDEQ 359 >gi|320644400|gb|EFX13465.1| Helicase family protein [Escherichia coli O157:H- str. 493-89] gi|320649718|gb|EFX18242.1| Helicase family protein [Escherichia coli O157:H- str. H 2687] Length = 952 Score = 41.1 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 29/249 (11%), Positives = 60/249 (24%), Gaps = 40/249 (16%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 + I+ G+GKT ++ LI G I+ +A + E Sbjct: 122 PRQRILIADAVGLGKTLEAGILVSELIRRGRGKRILVLAVK--SMLTQFQKEF------- 172 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH---NTHG 192 F + L +G + HY + H N Sbjct: 173 --WSRFAIPLTRLDSAGLQKVRNRIPTNHNPFHYFDKTIISIDTLKQDIEYRHHLENAWW 230 Query: 193 MAVFNDEASGTPDIINKSIL----GFFTELNPNRFWIMTS----------------NTRR 232 + DEA + S+ + + + + Sbjct: 231 DIIVIDEAHNVAERGTSSLRSKLAKLLAGRSDTLIMLSATPHDGKAESFASLMNMLDPTA 290 Query: 233 LNGW-FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG-----IISRYGLDSDVARIEILG 286 + Y+ + ++ + + + F E G + + R + Sbjct: 291 IANPKEYEYADFADKNLVVRRFKKDVKDQMSGEFPERNIVKLTRLASGAEEEAYRRLVES 350 Query: 287 QFPQQEVNN 295 QF + Sbjct: 351 QFRDDDDEQ 359 >gi|313906357|ref|ZP_07839698.1| helicase domain protein [Eubacterium cellulosolvens 6] gi|313468821|gb|EFR64182.1| helicase domain protein [Eubacterium cellulosolvens 6] Length = 1190 Score = 41.1 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 21/181 (11%), Positives = 54/181 (29%), Gaps = 11/181 (6%) Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS-IICIANSETQLKNT 123 + + ++ G+GKT A ++L + R ++ ++ I + Sbjct: 270 QFRPALKMIKADSPRILVADDVGVGKTI-EAGLILKEMEARSSINSVLIICPRPLVAERK 328 Query: 124 LWAEVSKW---LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID--SKHYTITCRTYSE 178 E+ ++ + L + E S + W + + + + S+ Sbjct: 329 WELEMKRFDEDFTQLDGKELLECISETDRDGEWPERHRKTIIPYSLFGEDMLAGTESTSD 388 Query: 179 ERPDTFVGPHNT---HGMAVFNDEASGTPDIINKSILGF-FTELNPNRFWIMTSNTRRLN 234 ++ H V DEA + + G + +T+ + + Sbjct: 389 KKRKQKGLMQLDPVPHFDLVIVDEAHNIRNSNTWAYQGVELFTRAADAVVFLTATPLQNS 448 Query: 235 G 235 Sbjct: 449 N 449 >gi|331665952|ref|ZP_08366846.1| ATP-dependent helicase [Escherichia coli TA143] gi|331057003|gb|EGI28997.1| ATP-dependent helicase [Escherichia coli TA143] Length = 952 Score = 41.1 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 29/249 (11%), Positives = 60/249 (24%), Gaps = 40/249 (16%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 + I+ G+GKT ++ LI G I+ +A + E Sbjct: 122 PRQRILIADAVGLGKTLEAGILVSELIRRGRGKRILVLAVK--SMLTQFQKEF------- 172 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH---NTHG 192 F + L +G + HY + H N Sbjct: 173 --WSRFAIPLTRLDSAGLQKVRNRIPTNHNPFHYFDKTIISIDTLKQDIEYRHHLENAWW 230 Query: 193 MAVFNDEASGTPDIINKSIL----GFFTELNPNRFWIMTS----------------NTRR 232 + DEA + S+ + + + + Sbjct: 231 DIIVIDEAHNVAERGTSSLRSKLAKLLAGRSDTLIMLSATPHDGKAESFASLMNMLDPTA 290 Query: 233 LNGW-FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG-----IISRYGLDSDVARIEILG 286 + Y+ + ++ + + + F E G + + R + Sbjct: 291 IANPKEYEYADFADKNLVVRRFKKDVKDQMSGEFPERNIVKLTRLASGAEEEAYRRLVES 350 Query: 287 QFPQQEVNN 295 QF + Sbjct: 351 QFRDDDDEQ 359 >gi|300928441|ref|ZP_07143973.1| protein, SNF2 family [Escherichia coli MS 187-1] gi|300463558|gb|EFK27051.1| protein, SNF2 family [Escherichia coli MS 187-1] Length = 952 Score = 41.1 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 29/249 (11%), Positives = 60/249 (24%), Gaps = 40/249 (16%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 + I+ G+GKT ++ LI G I+ +A + E Sbjct: 122 PRQRILIADAVGLGKTLEAGILVSELIRRGRGKRILVLAVK--SMLTQFQKEF------- 172 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH---NTHG 192 F + L +G + HY + H N Sbjct: 173 --WSRFAIPLTRLDSAGLQKVRNRIPTNHNPFHYFDKTIISIDTLKQDIEYRHHLENAWW 230 Query: 193 MAVFNDEASGTPDIINKSIL----GFFTELNPNRFWIMTS----------------NTRR 232 + DEA + S+ + + + + Sbjct: 231 DIIVIDEAHNVAERGTSSLRSKLAKLLAGRSDTLIMLSATPHDGKAESFASLMNMLDPTA 290 Query: 233 LNGW-FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG-----IISRYGLDSDVARIEILG 286 + Y+ + ++ + + + F E G + + R + Sbjct: 291 IANPKEYEYADFADKNLVVRRFKKDVKDQMSGEFPERNIVKLTRLASGAEEEAYRRLVES 350 Query: 287 QFPQQEVNN 295 QF + Sbjct: 351 QFRDDDDEQ 359 >gi|290974011|ref|XP_002669740.1| predicted protein [Naegleria gruberi] gi|284083291|gb|EFC36996.1| predicted protein [Naegleria gruberi] Length = 1143 Score = 41.1 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 24/168 (14%), Positives = 44/168 (26%), Gaps = 6/168 (3%) Query: 64 VHCHSNVNNSNPTIFKCAISAGR-GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN 122 N ++ I A G+GKT + L ++ + IA + Sbjct: 267 EGIKWLNTRFNADKYRGGILADEMGLGKTVQVSAF-LGGLAQSKTRRYLIIAP--LSVLQ 323 Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182 T +E+ KW + + + S + S + T RT Sbjct: 324 TWASELDKWAPNIKTFVFHNLSSKEQYNSMARDFHGCAKQQKSA-AIITTFRTLVTYTVT 382 Query: 183 TFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 DEA + I ++ + +T Sbjct: 383 LASLCAKQEFDITIVDEAHQIKNDQ-TGISKNLRKIGSRAKFCLTGTP 429 >gi|212638706|ref|YP_002315226.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1] gi|212560186|gb|ACJ33241.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1] Length = 426 Score = 41.1 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 32/225 (14%), Positives = 57/225 (25%), Gaps = 31/225 (13%) Query: 31 FVMRFF-PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIG 89 F F P+ I+ F +P Q + AV + G G Sbjct: 2 FERFSFHPFIIEAIEHLKFHKPTPIQERVIPAVLRGES------------VIGQSQTGTG 49 Query: 90 KTTLNAWMMLWLISTRPGMSI-----ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 KT +L I R + + A + + EV K P+ H Sbjct: 50 KTH---AYLL-PIIQRIDPRVAEVQAVITAPTRELATQI-YHEVLKITKFCPNDHRITA- 103 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 G + + T + + + H + DEA Sbjct: 104 --RCFVGGTDKLRSIEKLKTQPHLVIGTPGRIDDLVREQALFVHTAR--MLVVDEADVML 159 Query: 205 DIINKSILGFFTELNPNRFWIMTSN---TRRLNGWFYDIFNIPLE 246 D+ + + P ++ + +L + P Sbjct: 160 DMGFIADVDRVAGRMPEDLQMLVFSATIPEKLKPFLKKYMEHPTH 204 >gi|208780086|ref|ZP_03247429.1| restriction modification system-R protein [Francisella novicida FTG] gi|208744090|gb|EDZ90391.1| restriction modification system-R protein [Francisella novicida FTG] Length = 372 Score = 41.1 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 57/182 (31%), Gaps = 5/182 (2%) Query: 49 SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108 +Q++ +E + V A G GKT + A +L+L Sbjct: 37 QHLRPYQIKALENFIFYNTDPVYKKIDNKHLLFHMA-TGSGKTNIIAATILYLYEQGYRD 95 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 I + N++ + T + K+ S + ++ + S ++ ++ + + Sbjct: 96 FIFFV-NTQNIITKTKANLIDKYSSKYLFKDTMQIDVNEITDSFDSSKSNSINIMFTTIN 154 Query: 169 YTI-TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227 +E ++ N DEA K T+ NR W T Sbjct: 155 KLHGDLELLVKENSISYADFENRKIAL-IADEAHHLNSE-FKKGKATKTDEENNRSWSTT 212 Query: 228 SN 229 N Sbjct: 213 KN 214 >gi|158851710|gb|ABW82056.1| polyprotein [Dengue virus 3] Length = 3390 Score = 41.1 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALRGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|154500303|ref|ZP_02038341.1| hypothetical protein BACCAP_03970 [Bacteroides capillosus ATCC 29799] gi|150271035|gb|EDM98309.1| hypothetical protein BACCAP_03970 [Bacteroides capillosus ATCC 29799] Length = 1182 Score = 41.1 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 22/179 (12%), Positives = 51/179 (28%), Gaps = 9/179 (5%) Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-SIICIANSETQLKNT 123 + + ++ G+GKT + A +++ + R G S++ I + Sbjct: 267 QFRPALKVIQAEQPRLLVADSVGVGKT-IEAGLIMKELQARSGAESVLIICPKPLVAERK 325 Query: 124 LWAEVSKW---LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID---SKHYTITCRTYS 177 E+ ++ + + S + W + + Sbjct: 326 WELEMKRFDETFTQMNSEDLRRAISDTHRDGVWPDRYRKAIVPYSILTGATLDGVSARRG 385 Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF-FTELNPNRFWIMTSNTRRLNG 235 ++ F V DEA + + G F N N ++T+ + Sbjct: 386 KKNYGLFDLDPAPQFDLVIVDEAHHIRNRSTLAYAGVEFFCRNANAVVLLTATPVQTGD 444 >gi|170021860|ref|YP_001726814.1| helicase domain-containing protein [Escherichia coli ATCC 8739] gi|169756788|gb|ACA79487.1| helicase domain protein [Escherichia coli ATCC 8739] Length = 952 Score = 41.1 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 29/249 (11%), Positives = 60/249 (24%), Gaps = 40/249 (16%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 + I+ G+GKT ++ LI G I+ +A + E Sbjct: 122 PRQRILIADAVGLGKTLEAGILVSELIRRGRGKRILVLAVK--SMLTQFQKEF------- 172 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH---NTHG 192 F + L +G + HY + H N Sbjct: 173 --WSRFAIPLTRLDSAGLQKVRNRIPTNHNPFHYFDKTIISIDTLKQDIEYRHHLENAWW 230 Query: 193 MAVFNDEASGTPDIINKSIL----GFFTELNPNRFWIMTS----------------NTRR 232 + DEA + S+ + + + + Sbjct: 231 DIIVIDEAHNVAERGTSSLRSKLAKLLAGRSDTLIMLSATPHDGKAESFASLMNMLDPTA 290 Query: 233 LNGW-FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG-----IISRYGLDSDVARIEILG 286 + Y+ + ++ + + + F E G + + R + Sbjct: 291 IANPKEYEYADFADKNLVVRRFKKDVKDQMSGEFPERNIVKLTRLASGAEEEAYRRLVES 350 Query: 287 QFPQQEVNN 295 QF + Sbjct: 351 QFRDDDDEQ 359 >gi|15804878|ref|NP_290919.1| putative ATP-dependent helicase [Escherichia coli O157:H7 EDL933] gi|168749544|ref|ZP_02774566.1| helicase family protein [Escherichia coli O157:H7 str. EC4113] gi|168754866|ref|ZP_02779873.1| helicase family protein [Escherichia coli O157:H7 str. EC4401] gi|168760541|ref|ZP_02785548.1| helicase family protein [Escherichia coli O157:H7 str. EC4501] gi|168766575|ref|ZP_02791582.1| helicase family protein [Escherichia coli O157:H7 str. EC4486] gi|168773995|ref|ZP_02799002.1| helicase family protein [Escherichia coli O157:H7 str. EC4196] gi|168782811|ref|ZP_02807818.1| helicase family protein [Escherichia coli O157:H7 str. EC4076] gi|168784937|ref|ZP_02809944.1| helicase family protein [Escherichia coli O157:H7 str. EC869] gi|168797866|ref|ZP_02822873.1| helicase family protein [Escherichia coli O157:H7 str. EC508] gi|170683792|ref|YP_001746739.1| helicase family protein [Escherichia coli SMS-3-5] gi|195937309|ref|ZP_03082691.1| helicase domain-containing protein [Escherichia coli O157:H7 str. EC4024] gi|208806552|ref|ZP_03248889.1| helicase family protein [Escherichia coli O157:H7 str. EC4206] gi|208811987|ref|ZP_03253316.1| helicase family protein [Escherichia coli O157:H7 str. EC4045] gi|208818305|ref|ZP_03258625.1| helicase family protein [Escherichia coli O157:H7 str. EC4042] gi|209398792|ref|YP_002273828.1| helicase family protein [Escherichia coli O157:H7 str. EC4115] gi|217326570|ref|ZP_03442654.1| helicase family protein [Escherichia coli O157:H7 str. TW14588] gi|254796304|ref|YP_003081141.1| putative ATP-dependent helicase [Escherichia coli O157:H7 str. TW14359] gi|261226661|ref|ZP_05940942.1| putative ATP-dependent helicase [Escherichia coli O157:H7 str. FRIK2000] gi|261256952|ref|ZP_05949485.1| putative ATP-dependent helicase [Escherichia coli O157:H7 str. FRIK966] gi|291285686|ref|YP_003502504.1| Helicase family protein [Escherichia coli O55:H7 str. CB9615] gi|12519307|gb|AAG59485.1|AE005661_1 putative ATP-dependent helicase [Escherichia coli O157:H7 str. EDL933] gi|170521510|gb|ACB19688.1| helicase family protein [Escherichia coli SMS-3-5] gi|187770256|gb|EDU34100.1| helicase family protein [Escherichia coli O157:H7 str. EC4196] gi|188016143|gb|EDU54265.1| helicase family protein [Escherichia coli O157:H7 str. EC4113] gi|188999742|gb|EDU68728.1| helicase family protein [Escherichia coli O157:H7 str. EC4076] gi|189357770|gb|EDU76189.1| helicase family protein [Escherichia coli O157:H7 str. EC4401] gi|189363963|gb|EDU82382.1| helicase family protein [Escherichia coli O157:H7 str. EC4486] gi|189368951|gb|EDU87367.1| helicase family protein [Escherichia coli O157:H7 str. EC4501] gi|189375059|gb|EDU93475.1| helicase family protein [Escherichia coli O157:H7 str. EC869] gi|189379473|gb|EDU97889.1| helicase family protein [Escherichia coli O157:H7 str. EC508] gi|208726353|gb|EDZ75954.1| helicase family protein [Escherichia coli O157:H7 str. EC4206] gi|208733264|gb|EDZ81951.1| helicase family protein [Escherichia coli O157:H7 str. EC4045] gi|208738428|gb|EDZ86110.1| helicase family protein [Escherichia coli O157:H7 str. EC4042] gi|209160192|gb|ACI37625.1| helicase family protein [Escherichia coli O157:H7 str. EC4115] gi|217322791|gb|EEC31215.1| helicase family protein [Escherichia coli O157:H7 str. TW14588] gi|254595704|gb|ACT75065.1| putative ATP-dependent helicase [Escherichia coli O157:H7 str. TW14359] gi|290765559|gb|ADD59520.1| Helicase family protein [Escherichia coli O55:H7 str. CB9615] gi|320190583|gb|EFW65233.1| putative ATP-dependent helicase [Escherichia coli O157:H7 str. EC1212] gi|320639030|gb|EFX08676.1| Helicase family protein [Escherichia coli O157:H7 str. G5101] gi|320654766|gb|EFX22735.1| Helicase family protein [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|326345385|gb|EGD69128.1| putative ATP-dependent helicase [Escherichia coli O157:H7 str. 1125] gi|326346760|gb|EGD70494.1| putative ATP-dependent helicase [Escherichia coli O157:H7 str. 1044] Length = 952 Score = 41.1 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 29/249 (11%), Positives = 60/249 (24%), Gaps = 40/249 (16%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 + I+ G+GKT ++ LI G I+ +A + E Sbjct: 122 PRQRILIADAVGLGKTLEAGILVSELIRRGRGKRILVLAVK--SMLTQFQKEF------- 172 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH---NTHG 192 F + L +G + HY + H N Sbjct: 173 --WSRFAIPLTRLDSAGLQKVRNRIPTNHNPFHYFDKTIISIDTLKQDIEYRHHLENAWW 230 Query: 193 MAVFNDEASGTPDIINKSIL----GFFTELNPNRFWIMTS----------------NTRR 232 + DEA + S+ + + + + Sbjct: 231 DIIVIDEAHNVAERGTSSLRSKLAKLLAGRSDTLIMLSATPHDGKAESFASLMNMLDPTA 290 Query: 233 LNGW-FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG-----IISRYGLDSDVARIEILG 286 + Y+ + ++ + + + F E G + + R + Sbjct: 291 IANPKEYEYADFADKNLVVRRFKKDVKDQMSGEFPERNIVKLTRLASGAEEEAYRRLVES 350 Query: 287 QFPQQEVNN 295 QF + Sbjct: 351 QFRDDDDEQ 359 >gi|15834515|ref|NP_313288.1| ATP-dependent helicase [Escherichia coli O157:H7 str. Sakai] gi|13364739|dbj|BAB38684.1| putative ATP-dependent helicase [Escherichia coli O157:H7 str. Sakai] Length = 943 Score = 41.1 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 29/249 (11%), Positives = 60/249 (24%), Gaps = 40/249 (16%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 + I+ G+GKT ++ LI G I+ +A + E Sbjct: 113 PRQRILIADAVGLGKTLEAGILVSELIRRGRGKRILVLAVK--SMLTQFQKEF------- 163 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH---NTHG 192 F + L +G + HY + H N Sbjct: 164 --WSRFAIPLTRLDSAGLQKVRNRIPTNHNPFHYFDKTIISIDTLKQDIEYRHHLENAWW 221 Query: 193 MAVFNDEASGTPDIINKSIL----GFFTELNPNRFWIMTS----------------NTRR 232 + DEA + S+ + + + + Sbjct: 222 DIIVIDEAHNVAERGTSSLRSKLAKLLAGRSDTLIMLSATPHDGKAESFASLMNMLDPTA 281 Query: 233 LNGW-FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG-----IISRYGLDSDVARIEILG 286 + Y+ + ++ + + + F E G + + R + Sbjct: 282 IANPKEYEYADFADKNLVVRRFKKDVKDQMSGEFPERNIVKLTRLASGAEEEAYRRLVES 341 Query: 287 QFPQQEVNN 295 QF + Sbjct: 342 QFRDDDDEQ 350 >gi|229194206|ref|ZP_04321061.1| phage terminase, large subunit [Bacillus cereus ATCC 10876] gi|228589267|gb|EEK47231.1| phage terminase, large subunit [Bacillus cereus ATCC 10876] Length = 539 Score = 41.1 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 55/185 (29%), Gaps = 24/185 (12%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS--- 109 WQ +F+ A+ + + + I GRG GKT A+ ++++ G++ Sbjct: 53 PWQ-KFLNALM-YGVRFKKDDRIVFDEVLILMGRGGGKTGYMAYDSFYMMTGHHGINNYD 110 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I +A SE Q K + +V +S + L E + Sbjct: 111 IDVVATSEDQAK-RTFTDVYNVIS--------TPSFKEKFKKIFKWTLEEIQHKKTNSVM 161 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 + V DEA +I + + R + Sbjct: 162 NYNTSNSRTKD--------GKRTGCVIFDEAHEY--ENYDNINVYTSGQGKVRGSRIIYT 211 Query: 230 TRRLN 234 T + Sbjct: 212 TTDGH 216 >gi|313885754|ref|ZP_07819501.1| type III restriction enzyme, res subunit [Eremococcus coleocola ACS-139-V-Col8] gi|312618981|gb|EFR30423.1| type III restriction enzyme, res subunit [Eremococcus coleocola ACS-139-V-Col8] Length = 711 Score = 41.1 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 29/206 (14%), Positives = 59/206 (28%), Gaps = 11/206 (5%) Query: 4 LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63 ++++ L L++ L+ L FV +Q + + Sbjct: 3 KKTSNKTLPLPLYDELL----KLDQDVFVSATAYDHPAYLTENMVHTFRYYQEDALR-FF 57 Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 H + + G GKT L A +ML+L + + + N+ + L T Sbjct: 58 HHSQTLPQFHYRHPNHVLFNMATGSGKTDLMAGLMLYLYQEHDYQNFLFVVNTNSVLNKT 117 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPS-----GWYAELLEQSMGIDSKHYTITCRTYSE 178 + + + E++ + + + + S Sbjct: 118 IDNLTNPQSDKYLFQQSIEIEGERIRIEKVSQYPRQPQKNVIYLKLASIQSVFNDLFTQR 177 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTP 204 E + H +AV DEA Sbjct: 178 ENTMGLTDY-SRHKVAVLGDEAHHYS 202 >gi|255927576|gb|ACU41198.1| gp52 [Mycobacterium phage Colbert] Length = 559 Score = 41.1 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 19/169 (11%), Positives = 45/169 (26%), Gaps = 13/169 (7%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q E +EA++ H V + + G GK+T+ + R ++ Sbjct: 2 RPYQREAVEAIESHWSQGVT-------RVGVVLPTGTGKSTVIGRTAVNGYQNREP--VL 52 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 +A+ + + P + + A ++ ++ + + Sbjct: 53 MVAHRGELIDQMAGTIF----EVDPSIPRSHVGIVRAEMDDHSAPIVVATLQTLATAHRR 108 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220 + V G E G D + + Sbjct: 109 EAVGFRRRILWDEVHHAGAEGFHTTFTELGGYTDALFAGFTATMRRDDK 157 >gi|239500908|ref|ZP_04660218.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter baumannii AB900] Length = 583 Score = 41.1 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 20/149 (13%), Positives = 38/149 (25%), Gaps = 16/149 (10%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 E ++ + I+ G G GKT A ++ L P + + A Sbjct: 118 EEHLDLLTDPHQRAALQMVSRQSLSIITGGPGTGKTYTLARIIAVLSQAIPHIRVAMAAP 177 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 + + +Q+ P + + L+ + S Sbjct: 178 TGKAAQRM----------------QEALQNSFNDPKLFESGLMSDELRNQSTQTIHRLLG 221 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + F + DEAS Sbjct: 222 MGHSQTPRFNQKQPLPYDVIVVDEASMLD 250 >gi|124028015|ref|YP_001013335.1| P-loop ATPase [Hyperthermus butylicus DSM 5456] gi|123978709|gb|ABM80990.1| P-loop ATPase [Hyperthermus butylicus DSM 5456] Length = 743 Score = 41.1 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 20/150 (13%), Positives = 41/150 (27%), Gaps = 11/150 (7%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q E ++ + H S + RG GK+ L + +++++ + A Sbjct: 203 QAEALDKIVAHVRSRG-------RSILVLGDRGRGKSGLLGLAVAYIVASHMAGFVSVTA 255 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL--HPSGWYAELLEQSMGIDSKHYTIT 172 S + + + + L L RHW + + W+ D Sbjct: 256 PSPANV-QSFFRILRLALGKLGTRHWEIRRGNIVIGIAGPWFHVRYHTPDRADPGS-FTV 313 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 + P + G Sbjct: 314 VDEAAALGPSRLRSIARRAPRLLAATTIHG 343 >gi|15218086|ref|NP_173520.1| emb1507 (embryo defective 1507); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding / nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] gi|4836892|gb|AAD30595.1|AC007369_5 Putative RNA helicase [Arabidopsis thaliana] gi|332191925|gb|AEE30046.1| putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] gi|332191926|gb|AEE30047.1| putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] Length = 2171 Score = 41.1 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 20/167 (11%), Positives = 37/167 (22%), Gaps = 16/167 (9%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFK----CAISAGRGIGKTTLNAWMMLWLISTRPGM--SI 110 E + H + ++ ++A G GKT + +L P + Sbjct: 1342 EILYQDFKHFNPVQTQVFTVLYNTNDNVLVAAPTGSGKTICAEFAILRNHHEGPDATMRV 1401 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + IA E K K+ L R +L + Sbjct: 1402 VYIAPLEAIAKEQFRIWEGKFGKGLGLRVVELTGETALDLKLLEK----------GQIII 1451 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217 T + + DE + + Sbjct: 1452 STPEKWDALSRRWKQRKYVQQVSLFIVDELHLIGGQHGPVLEVIVSR 1498 >gi|312884016|ref|ZP_07743733.1| ATP-dependent RNA helicase SrmB [Vibrio caribbenthicus ATCC BAA-2122] gi|309368474|gb|EFP96009.1| ATP-dependent RNA helicase SrmB [Vibrio caribbenthicus ATCC BAA-2122] Length = 407 Score = 41.1 bits (94), Expect = 0.32, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 79/313 (25%), Gaps = 50/313 (15%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 + +P + Q E + SA G GKT L + Sbjct: 21 MGYQRPTQIQAEAIPQALDG------------RDVLASAPTGTGKTAAFVLPALQFLQDF 68 Query: 106 P-----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 P I+ + + AE ++ L+ + F + + Q Sbjct: 69 PRKQPGPARILILTPTRELAMQV--AEQARALAKHTRLNIFTITGGVQYQEHADILATTQ 126 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220 + + + DEA D+ + + Sbjct: 127 DI--------VVATPGRLMEYIEAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSSECR 178 Query: 221 NRFWIMTSNTR----RLNGWFYDIFNIP---------LEDWKRYQIDTRTVEGIDS-GFH 266 R + + + G+ D+ P E K Q R + Sbjct: 179 WRKQTLLFSATLEGRGVEGFTADLLKEPAMIDAEPSRRERKKIAQWYHRADDMAHKLELL 238 Query: 267 EGIISRYGLDSDVAR--IEILGQFPQQEVNNFIPHNYI--EEAMSRE-----AIDDLYAP 317 + I++ S V E L + IP +I E R D Sbjct: 239 KSILNNQAERSIVFLKTRERLSALRSELEKAEIPCAWIQGEMPQDRRNNAISRFSDGTVN 298 Query: 318 LIMGCDIAGEGGD 330 +++ D+A G D Sbjct: 299 VLLATDVAARGID 311 >gi|72021085|ref|XP_793570.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115928806|ref|XP_001188414.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 1117 Score = 41.1 bits (94), Expect = 0.32, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 46/170 (27%), Gaps = 16/170 (9%) Query: 80 CAISAGRGIGKTTLNAWMMLWLI-STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + A G GKT + + + L I T P ++ +A + E++ + Sbjct: 6 LIVQAKSGTGKTCVFSVIALEGIDLTNPSTQVLILAPT---------REIAVQIQDTIRA 56 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 EM+ L H L K + ++ + D Sbjct: 57 IGCEMEGLRSHVFIGGT-LFGPDRQKLKKCHIAVGTPGRIKQLIEYEVLKTGTIRLFVLD 115 Query: 199 EASGTPDIINK----SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244 EA D + I ++ N + + L P Sbjct: 116 EADKLLDDTFQEQVNWIYNHLSD-NKQMLALSATYPEYLAKHLTKYMREP 164 >gi|87119779|ref|ZP_01075676.1| PhoH family protein [Marinomonas sp. MED121] gi|86165255|gb|EAQ66523.1| PhoH family protein [Marinomonas sp. MED121] Length = 463 Score = 41.1 bits (94), Expect = 0.32, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 47/144 (32%), Gaps = 13/144 (9%) Query: 87 GIGKTTLNAWMML-WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 G GKT L L + + II ++ ++ + ++ M P F+ Sbjct: 282 GSGKTLLALAYALQVSMEEKRFSKIIVARSTPPMAEDIGFLPGTEEEKMAPWLAAFDDNL 341 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 LH + ++ + + + F+ + + + DEA G Sbjct: 342 EILHGADEHSISSIDYVKQKANIQFKSL---------NFMRGRSFNNALIIVDEAQGLTQ 392 Query: 206 IINKSILGFFTELNPNRFWIMTSN 229 KSI T + N I+ N Sbjct: 393 FQLKSI---VTRIGSNSRIIVLGN 413 >gi|332310408|gb|EGJ23503.1| Ftsk/spoIIIe family protein [Listeria monocytogenes str. Scott A] Length = 1478 Score = 41.1 bits (94), Expect = 0.32, Method: Composition-based stats. Identities = 32/328 (9%), Positives = 76/328 (23%), Gaps = 44/328 (13%) Query: 26 LSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAG 85 L NF W KPL+ ++ ++ + A+ + Sbjct: 942 LHPVNF---EEAWKEPKKPLQATIG-------LLDQPELQAQVPLTLDLTKDGHVAVFSS 991 Query: 86 RGIGKTTLNAWMMLWLISTRPGMS------------IICIANSETQLKNTLWAE---VSK 130 G GK+T +++ L ++ + + + E + K Sbjct: 992 PGFGKSTFLQSLVMDLARQHNPEQLHVYLLDFGTNGLLPLVDLPHIADTMMVDEVEKIQK 1051 Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190 +L + + + LS + + S + + + Sbjct: 1052 FLRICLNEIKTRKKLLSQYRVANIEQYERASGKELPNIIVVLDNYDAVKDAGLGDDF--E 1109 Query: 191 HGMAVFNDEASGTPDIINKSILGF--------FTELNPNRFWIMTSNTRRLNGWFYDIFN 242 + E + + I + + ++ Sbjct: 1110 KIITQITREGASI--GMFMIISASRHMSLRTQMATNIKQMIALYLIDKNDISSTVGRTDT 1167 Query: 243 IPLEDWKRYQIDTRTVEGIDS------GFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 E R + TV + I ++ + R G+ P+ Sbjct: 1168 PLEEYPGRALVKLETVTTFQTTLPSHGEETIQQIEGIRNEAKLMREGWQGELPESVPMIP 1227 Query: 297 IPHNYIEEAMSRE-AIDDLYAPLIMGCD 323 + E + +G D Sbjct: 1228 EKIKLADFCEWMETKEVVANGNIPIGVD 1255 >gi|254518470|ref|ZP_05130526.1| phage terminase [Clostridium sp. 7_2_43FAA] gi|226912219|gb|EEH97420.1| phage terminase [Clostridium sp. 7_2_43FAA] Length = 579 Score = 41.1 bits (94), Expect = 0.32, Method: Composition-based stats. Identities = 27/209 (12%), Positives = 58/209 (27%), Gaps = 13/209 (6%) Query: 54 WQLEFMEAVDVHC--HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML--WLISTRPGMS 109 +Q F+EA+ V GR GKT L + L W G Sbjct: 86 FQKAFIEAIFAIKMYDEEVGRYVRKYQDILFLVGRKNGKTPLIGAICLSEWFCGEM-GKK 144 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I+C +N Q + ++ ++ ++L ++ K Sbjct: 145 ILCASNDFEQA-DLMFQAINSMREESKTLEKVTRKNLK-----GIYFGNPRTKKKKGKFS 198 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSILGFFTELNPNRFWIMTS 228 + + + + DE D + I + + ++ +T+ Sbjct: 199 YQNKGSIRKLSAKSG-AKEGRNIGVGAVDEVFEMEDDSLVMPIRQALSTQDEPLYFELTT 257 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257 +G+ + + + R Sbjct: 258 EGFTQDGYLDKRLIEARKVLNGEKQNERW 286 >gi|221369955|ref|YP_002521051.1| Helicase domain protein [Rhodobacter sphaeroides KD131] gi|221163007|gb|ACM03978.1| Helicase domain protein [Rhodobacter sphaeroides KD131] Length = 990 Score = 41.1 bits (94), Expect = 0.32, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 44/153 (28%), Gaps = 18/153 (11%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G+GKT ++ L P + IA +S+W R Sbjct: 61 GLGKTVQALMIVNALRWQDPKHRTLVIAPD---------NLLSQWQEECWIRGHVMPAIA 111 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 G + +LL ++ T + D V + DE P Sbjct: 112 GALGHGTHDDLLPITLARPRDLMTRPGQGTRTITADPDV------FDLLIVDEPQTMPR- 164 Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239 + I + + R ++ S T RL + Sbjct: 165 --EVIQAIASASDDFRQVLVLSATPRLGDPSWR 195 >gi|197334932|ref|YP_002155940.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11] gi|197316422|gb|ACH65869.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11] Length = 431 Score = 41.1 bits (94), Expect = 0.32, Method: Composition-based stats. Identities = 25/272 (9%), Positives = 70/272 (25%), Gaps = 38/272 (13%) Query: 87 GIGKTTLNAWMMLWLIST------RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 G GKT A ++ + R + +A + + + Sbjct: 48 GTGKTAAFALPVIQQLLDSKKSATRRTARALILAPTRELAEQIAVNI----------ADY 97 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + SL++ ++ Q ++ + + + + DEA Sbjct: 98 TKYTSLTVTSVFGGKKMSSQERALEPGVDILVATPGRLQEHIEEENVSIANLEFLVFDEA 157 Query: 201 S-GTPDIINKSILG-FFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 +I + + ++ + + +T Sbjct: 158 DRMLDMGFVNAIRNIMMEVNTSPQIMLFSATSSAQMNKLASDILRKPKRISVDPENTTAS 217 Query: 259 EGIDSGFHEGIISRYGLDSDV-----ARIEILGQFPQQEVNNFI-------------PHN 300 + + L S++ + ++ ++ N + + Sbjct: 218 TIAHVVYPVDEERKTELLSELIGRKNWQQVLVFVNYKETANEIVKELKLDGIKAVLCHGD 277 Query: 301 YIEEAMSREAID--DLYAPLIMGCDIAGEGGD 330 + A R + + A +++ D+A G D Sbjct: 278 KAQSARRRALEEFKEGKARVMVATDVAARGLD 309 >gi|254930798|ref|ZP_05264157.1| diarrheal toxin/FtsK/SpoIIIE family protein [Listeria monocytogenes HPB2262] gi|293582340|gb|EFF94372.1| diarrheal toxin/FtsK/SpoIIIE family protein [Listeria monocytogenes HPB2262] Length = 1498 Score = 41.1 bits (94), Expect = 0.32, Method: Composition-based stats. Identities = 32/328 (9%), Positives = 76/328 (23%), Gaps = 44/328 (13%) Query: 26 LSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAG 85 L NF W KPL+ ++ ++ + A+ + Sbjct: 962 LHPVNF---EEAWKEPKKPLQATIG-------LLDQPELQAQVPLTLDLTKDGHVAVFSS 1011 Query: 86 RGIGKTTLNAWMMLWLISTRPGMS------------IICIANSETQLKNTLWAE---VSK 130 G GK+T +++ L ++ + + + E + K Sbjct: 1012 PGFGKSTFLQSLVMDLARQHNPEQLHVYLLDFGTNGLLPLVDLPHIADTMMVDEVEKIQK 1071 Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190 +L + + + LS + + S + + + Sbjct: 1072 FLRICLNEIKTRKKLLSQYRVANIEQYERASGKELPNIIVVLDNYDAVKDAGLGDDF--E 1129 Query: 191 HGMAVFNDEASGTPDIINKSILGF--------FTELNPNRFWIMTSNTRRLNGWFYDIFN 242 + E + + I + + ++ Sbjct: 1130 KIITQITREGASI--GMFMIISASRHMSLRTQMATNIKQMIALYLIDKNDISSTVGRTDT 1187 Query: 243 IPLEDWKRYQIDTRTVEGIDS------GFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 E R + TV + I ++ + R G+ P+ Sbjct: 1188 PLEEYPGRALVKLETVTTFQTTLPSHGEETIQQIEGIRNEAKLMREGWQGELPESVPMIP 1247 Query: 297 IPHNYIEEAMSRE-AIDDLYAPLIMGCD 323 + E + +G D Sbjct: 1248 EKIKLADFCEWMETKEVVANGNIPIGVD 1275 >gi|193206561|ref|NP_502998.2| Maternal Effect Lethal family member (mel-46) [Caenorhabditis elegans] gi|154147106|emb|CAM36366.2| C. elegans protein T06A10.1, confirmed by transcript evidence [Caenorhabditis elegans] gi|154756880|gb|ABS85191.1| MEL-46 [Caenorhabditis elegans] Length = 973 Score = 41.1 bits (94), Expect = 0.32, Method: Composition-based stats. Identities = 18/158 (11%), Positives = 45/158 (28%), Gaps = 13/158 (8%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPG--MSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + A G GKT + + + + + +R +I + E+S + Sbjct: 62 MLVQAKSGTGKTLVFSVLAVENLDSRSSHIQKVIVT-PT---------REISVQIKETVR 111 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + S++ G +L + ++ + + + +H Sbjct: 112 KVAPTGARTSVYVGGSAHKLNLIDLK-QTRPQIVIGTPGRIAQLVKLGAMNMSHVDFFVL 170 Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 DEA D + + + P + + Sbjct: 171 DEADKLMDEVFRDDINIIINSLPQIRQVAVFSATYPRN 208 >gi|148826204|ref|YP_001290957.1| DNA-dependent helicase II [Haemophilus influenzae PittEE] gi|229846218|ref|ZP_04466330.1| DNA-dependent helicase II [Haemophilus influenzae 7P49H1] gi|148716364|gb|ABQ98574.1| DNA helicase II [Haemophilus influenzae PittEE] gi|229811222|gb|EEP46939.1| DNA-dependent helicase II [Haemophilus influenzae 7P49H1] Length = 726 Score = 41.1 bits (94), Expect = 0.32, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 84/302 (27%), Gaps = 29/302 (9%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 E ++ ++ V + AG G GKT + + WLI+ +A + Sbjct: 5 ELLDGLNDKQREAVAAPLGNH---LVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 T N AE+ + +H W + + H+ Sbjct: 62 FT---NKAAAEMRHRIQSTLAKHAQHQLFG-----MWIGTFHSIAHRLLRAHHLDVGLPQ 113 Query: 177 SEERPDTFVGPHNTHGMAVF--NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 + D+ + DE + P + + + Sbjct: 114 DFQILDSEDQRRLIKRLLKLHNFDEKAF-PPKQACWYINNKKDEGLR--------PNDIE 164 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294 + ++ ++ YQ +D + + +F V+ Sbjct: 165 DFNDRQEREWIKIYQIYQDTCDRAGLVDFAELLIRVYELFEKKPLILQRYQQRFQHILVD 224 Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354 F N I+ + + +++ D D++ + RG IE+I + Sbjct: 225 EFQDTNKIQYK-WIKILAGKTGKVMIVGD-----DDQS-IYGWRGAQIENIQKFLKDFKA 277 Query: 355 ET 356 ET Sbjct: 278 ET 279 >gi|47230040|emb|CAG10454.1| unnamed protein product [Tetraodon nigroviridis] Length = 1724 Score = 41.1 bits (94), Expect = 0.32, Method: Composition-based stats. Identities = 17/157 (10%), Positives = 41/157 (26%), Gaps = 12/157 (7%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + G+GKT + + +M P I+ +A ++ + ++ ++ Sbjct: 165 NTLVCLPTGLGKTFIASVVMYNFYRWYPSGKIVFMAPTKPLVAQ----QIEACYKVMGIP 220 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + + E+ + E P V D Sbjct: 221 QAHMAELTGSTAAKQRQEVWRTKRVFFLTPQVMVNDLSRETCP-------AQQVKCVVID 273 Query: 199 EASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 EA + ++ + + S T + Sbjct: 274 EAHKALGNHAYCQVIRQLSSQTLQFRILALSATPGGD 310 >gi|47092188|ref|ZP_00229980.1| diarrheal toxin/FtsK/SpoIIIE family protein [Listeria monocytogenes str. 4b H7858] gi|47019390|gb|EAL10131.1| diarrheal toxin/FtsK/SpoIIIE family protein [Listeria monocytogenes str. 4b H7858] gi|328468392|gb|EGF39398.1| DNA segregation ATPase FtsK/SpoIIIE [Listeria monocytogenes 1816] Length = 1498 Score = 41.1 bits (94), Expect = 0.32, Method: Composition-based stats. Identities = 32/328 (9%), Positives = 76/328 (23%), Gaps = 44/328 (13%) Query: 26 LSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAG 85 L NF W KPL+ ++ ++ + A+ + Sbjct: 962 LHPVNF---EEAWKEPKKPLQATIG-------LLDQPELQAQVPLTLDLTKDGHVAVFSS 1011 Query: 86 RGIGKTTLNAWMMLWLISTRPGMS------------IICIANSETQLKNTLWAE---VSK 130 G GK+T +++ L ++ + + + E + K Sbjct: 1012 PGFGKSTFLQSLVMDLARQHNPEQLHVYLLDFGTNGLLPLVDLPHIADTMMVDEVEKIQK 1071 Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190 +L + + + LS + + S + + + Sbjct: 1072 FLRICLNEIKTRKKLLSQYRVANIEQYERASGKELPNIIVVLDNYDAVKDAGLGDDF--E 1129 Query: 191 HGMAVFNDEASGTPDIINKSILGF--------FTELNPNRFWIMTSNTRRLNGWFYDIFN 242 + E + + I + + ++ Sbjct: 1130 KIITQITREGASI--GMFMIISASRHMSLRTQMATNIKQMIALYLIDKNDISSTVGRTDT 1187 Query: 243 IPLEDWKRYQIDTRTVEGIDS------GFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 E R + TV + I ++ + R G+ P+ Sbjct: 1188 PLEEYPGRALVKLETVTTFQTTLPSHGEETIQQIEGIRNEAKLMREGWQGELPESVPMIP 1247 Query: 297 IPHNYIEEAMSRE-AIDDLYAPLIMGCD 323 + E + +G D Sbjct: 1248 EKIKLADFCEWMETKEVVANGNIPIGVD 1275 >gi|302684619|ref|XP_003031990.1| hypothetical protein SCHCODRAFT_234573 [Schizophyllum commune H4-8] gi|300105683|gb|EFI97087.1| hypothetical protein SCHCODRAFT_234573 [Schizophyllum commune H4-8] Length = 662 Score = 40.7 bits (93), Expect = 0.32, Method: Composition-based stats. Identities = 32/276 (11%), Positives = 67/276 (24%), Gaps = 27/276 (9%) Query: 22 AECVLSFKNFVMRFFP----WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTI 77 A+ F F P W P+ + + + + + + Sbjct: 362 ADLFDQP-FFCAMFLPEEDTWDE-DAPMRPSLPIRFAKEDALNDSQRNALQRILSGANED 419 Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA-------NSETQLKNTLWAEVSK 130 + G GKTT+ A + ++ +I +A N +L + + E Sbjct: 420 RLVLVQGPPGTGKTTVIAGAVESIVRGDSKRTIWLVAQSNVAVKNMAEKLADVGFREFKV 479 Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS---KHYTITCRTYSEERPDTFVGP 187 +S H W E + ++ ++ + + T S D Sbjct: 480 LVSKDFHHEWHEHLYEKIEHRLIRSDGFPETPNEAARLLGDARVVLCTLSALAVDRLQSV 539 Query: 188 -HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN-------TRRLNGWFYD 239 H + DEAS +L ++ L + Sbjct: 540 THVVPPQMMLVDEASQI---EVGDLLPMLHLHRNRLEKVVFIGDDRQYRMPTFLGDFISQ 596 Query: 240 IFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275 + +D + + Sbjct: 597 YVYDGQLLSEHRNKSADCCRFVDVAEGKETRAGMSW 632 >gi|168029927|ref|XP_001767476.1| predicted protein [Physcomitrella patens subsp. patens] gi|162681372|gb|EDQ67800.1| predicted protein [Physcomitrella patens subsp. patens] Length = 1075 Score = 40.7 bits (93), Expect = 0.32, Method: Composition-based stats. Identities = 32/225 (14%), Positives = 67/225 (29%), Gaps = 28/225 (12%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 A++A RG GK+ + + +I A S LK L+ + K + ++ Sbjct: 279 VALTAARGRGKSAAL-GVAIAGAVAFGYSNIFVTAPSPENLKT-LFEFIFKGFDAMEYKE 336 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + S + ++ ++ + + E+ + DE Sbjct: 337 HIDYDLVESTNSAFNKAIVRVNIFRQHRQTIQYIQPKDHEK--------LAQAELLVIDE 388 Query: 200 ASGTPDIINKSILG-----FFTELNPNRF-----------WIMTSNTRRLNGW--FYDIF 241 A+ P I K++LG + +N ++ N G + Sbjct: 389 AAAIPLPIVKALLGPYLVFLCSTVNGETCDLGFYSVEFVTCLLLLNHYEGTGRSLSLKLI 448 Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 E + + E I + G + E+L Sbjct: 449 QQLREQSNKLHFKLTGRTFRELELAEPIRYKAGDPIEAWLNELLC 493 >gi|156406753|ref|XP_001641209.1| predicted protein [Nematostella vectensis] gi|156228347|gb|EDO49146.1| predicted protein [Nematostella vectensis] Length = 2147 Score = 40.7 bits (93), Expect = 0.32, Method: Composition-based stats. Identities = 19/188 (10%), Positives = 43/188 (22%), Gaps = 17/188 (9%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 I A G GKT + +L + P + + + + + W + Sbjct: 1345 NVFIGAPTGSGKTICAEFAVLRFLQQSPEGRCVYVTPIQALAEQVY----ADWQNK---- 1396 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 F +Q + + T + + + D Sbjct: 1397 --FGLQLGKNVVMLTGETSADLKLLAKGNVVVSTPEKWDVLSRRWKQRKNVQNVSLFIMD 1454 Query: 199 EASGTPDIINKSILGFFTELN-------PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY 251 EA + + + + S++ +P + Sbjct: 1455 EAHLIGGDTGPVMEIICSRMRYISSQLERTIRIVALSSSLANAKDVAQWLGVPSTGLFNF 1514 Query: 252 QIDTRTVE 259 + R V Sbjct: 1515 HPNVRPVP 1522 >gi|290975236|ref|XP_002670349.1| dead box RNA helicase [Naegleria gruberi] gi|284083907|gb|EFC37605.1| dead box RNA helicase [Naegleria gruberi] Length = 2295 Score = 40.7 bits (93), Expect = 0.32, Method: Composition-based stats. Identities = 25/202 (12%), Positives = 51/202 (25%), Gaps = 24/202 (11%) Query: 28 FKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA----IS 83 ++ V PL S W + H + ++ + +K + + Sbjct: 533 YEEHVFPAPKKREDNTPLVPISIFEDW-AQLAFKGYTHLNRVQSDVFYSAYKTSENMLVC 591 Query: 84 AGRGIGKTTLNAWMMLWLI--------STRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 A G GKT + +L I R II IA + + + + Sbjct: 592 APTGCGKTNIAMMTVLREIGQHFKGGKIRREEFKIIYIAPMKALAAEMVENFSKRLAPLG 651 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 ++ ++ E+ + M + + T + Sbjct: 652 I-----TVKEMTGDMQLTKREVQQTQMIVTTPEKWDVT-TRKASDQALIQLTR-----LI 700 Query: 196 FNDEASGTPDIINKSILGFFTE 217 DE + I Sbjct: 701 IIDEVHLLNEDRGPVIESIVAR 722 Score = 40.7 bits (93), Expect = 0.35, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 35/124 (28%), Gaps = 12/124 (9%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 I A G GKT L A + ++ + +P +I IA + ++ L K++ L Sbjct: 1451 NILIGAPTGSGKT-LAAELCIFRLFNTKPNQKVIYIAPLKALVRERLVEWEKKFVQKLGK 1509 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + E+ E + D + Sbjct: 1510 K-MVELTGDFTPDVKLLKEADIVITTPEKWDGISRNWQNRSYVRDVG---------LIVM 1559 Query: 198 DEAS 201 DE Sbjct: 1560 DEIH 1563 >gi|255928514|gb|ACU42129.1| gp52 [Mycobacterium phage UncleHowie] Length = 567 Score = 40.7 bits (93), Expect = 0.32, Method: Composition-based stats. Identities = 19/169 (11%), Positives = 45/169 (26%), Gaps = 13/169 (7%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q E +EA++ H V + + G GK+T+ + R ++ Sbjct: 10 RPYQREAVEAIESHWSQGVT-------RVGVVLPTGTGKSTVIGRTAVNGYQNREP--VL 60 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 +A+ + + P + + A ++ ++ + + Sbjct: 61 MVAHRGELIDQMAGTIF----EVDPSIPRSHVGIVRAEMDDHSAPIVVATLQTLATAHRR 116 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220 + V G E G D + + Sbjct: 117 EAVGFRRRILWDEVHHAGAEGFHTTFTELGGYTDALFAGFTATMRRDDK 165 >gi|167516624|ref|XP_001742653.1| hypothetical protein [Monosiga brevicollis MX1] gi|163779277|gb|EDQ92891.1| predicted protein [Monosiga brevicollis MX1] Length = 649 Score = 40.7 bits (93), Expect = 0.32, Method: Composition-based stats. Identities = 22/201 (10%), Positives = 52/201 (25%), Gaps = 5/201 (2%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G+GKT ++L ST+P + I + ++ L + + Sbjct: 74 GLGKTVQTIALILSRPSTKPNRPTMVICPTVALMQWRNEVRSKTVEGALSCFVYHGDNRI 133 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP--DTFVGPHNTHGMAVFNDEASGTP 204 +++ + + + + H H + DEA Sbjct: 134 RDLEQLSSFDIILTTYATVESGFRRMKSGFQRKGQKMYEDSVLHALHLHRLVLDEAHYIK 193 Query: 205 DIINKSILGFFTELNPNRFWIMTSNT-RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 D + + + +L + W ++ + G Y + + D + R Sbjct: 194 DRFSNTARAVW-DLKADYKWSLSGTPLQNRVGELYSLVKLLRADPYSHYF-CRQCPCKSL 251 Query: 264 GFHEGIISRYGLDSDVARIEI 284 + Sbjct: 252 KWSFERRQCTECGHRSMSHFC 272 >gi|146283765|ref|YP_001173918.1| SNF2 family DNA/RNA helicase [Pseudomonas stutzeri A1501] gi|145571970|gb|ABP81076.1| superfamily II DNA/RNA helicase, SNF2 family [Pseudomonas stutzeri A1501] Length = 957 Score = 40.7 bits (93), Expect = 0.32, Method: Composition-based stats. Identities = 25/237 (10%), Positives = 57/237 (24%), Gaps = 17/237 (7%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q M+A+ + I+ G+GKT + L+ I+ + Sbjct: 101 QHGVMDALPFQLQPAHQVLQQLRPRLLIADTVGLGKTLEAGILTAELMRRGKARRILVVT 160 Query: 115 NS--ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 Q + W + L+ L ++ + + +D Sbjct: 161 TKSMMRQFQQEFWNRFTIPLTRLDSAGIQRIRRDIPANHNPFNYYDRTIISVD------- 213 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTP---DIINKSILGFFTELNPNRFWIMTSN 229 + + + DEA + + L + ++T+ Sbjct: 214 ---TLKRDSEYRHYLEKAWWDLIIIDEAHNVSYKGNRTQSNRLAELLSQRSDALILLTAT 270 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL--DSDVARIEI 284 + L+ T + ++ F D E+ Sbjct: 271 PHNGKKDSFASLMRMLDPTVLPSGADYTRDDVEHLFIRRFKKDVREQMKQDFPEREV 327 >gi|270296274|ref|ZP_06202474.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273678|gb|EFA19540.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 771 Score = 40.7 bits (93), Expect = 0.33, Method: Composition-based stats. Identities = 45/326 (13%), Positives = 95/326 (29%), Gaps = 48/326 (14%) Query: 7 TDQKLEQELHEMLMHAECVLSFKNFVMRFFP-WGIKGKPLEHFSQ---PHRWQLEFMEAV 62 T ++ E +L E + I P + + P +Q ++ Sbjct: 116 TGKETEIKLENFPTEEELYNRYLASKNYTSDELNIIETPFYYDAHSHEPRYYQRIAVDRT 175 Query: 63 DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN 122 + + G GKT ++ L + I+ +A+ +N Sbjct: 176 VEAIARGQQ-------RVLVVMATGTGKTFTAFQIIHRLHKSGAKKKILYLAD-----RN 223 Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182 L + + F + S+ ++ + ++ + + E +PD Sbjct: 224 ILIDQT--MVQDFKPFKKFMTKITSV--GEGEEKIDSSYEVYMALYHQLVGK---EGKPD 276 Query: 183 TFVGPHNTHGMAVFNDEA---SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239 F+ + DE S D + +L +F+ MT+ + G Sbjct: 277 PFLEVQPNFFDLIIVDECHRGSAKDDSAWRKVLEYFSSATQ---IGMTATPKADEG---- 329 Query: 240 IFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPH 299 +D +GI D +A + F ++ + P Sbjct: 330 ----------ANNLDYFGEPVYTYSLLQGI-----QDGFLAPYRVTADFINVDLQGWTPD 374 Query: 300 NYIEEAMSREAIDDLYAPLIMGCDIA 325 + + +E LY +G D+A Sbjct: 375 EGEIDLLGKEIEQKLYQRQNIGRDLA 400 >gi|220933618|ref|YP_002512517.1| phage uncharacterized protein [Thioalkalivibrio sp. HL-EbGR7] gi|219994928|gb|ACL71530.1| phage uncharacterized protein [Thioalkalivibrio sp. HL-EbGR7] Length = 537 Score = 40.7 bits (93), Expect = 0.33, Method: Composition-based stats. Identities = 37/332 (11%), Positives = 89/332 (26%), Gaps = 29/332 (8%) Query: 27 SFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR 86 F+ F +FP + P+ +++ +P AI+A R Sbjct: 48 DFEFFARTYFP--------HYIVHPNSRLHDYLYR-----RLPEIADSPRSETDAIAAPR 94 Query: 87 GIGKTTLNA-WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 G K+T+ + ++W + T I ++ Q L A ++ + F+ + Sbjct: 95 GEAKSTITSQIYVIWCVVTGRKWYPIIGMDAFDQAAIMLEAIKAELEANPRLNMDFQEAT 154 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 + + I++ R P DE TP+ Sbjct: 155 GQGRVWRAGVIVTRNNRKIEAVGSGKRIRG-RRHGPHRPDLFVGDDLEN---DENVRTPE 210 Query: 206 I------INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 + I+ + + PL +++ R + Sbjct: 211 QRDKLHGWLNKAVLKLGAAGAKFDVIVIGTILHYDSVLARVLKNPLWRGNKFKAVIRWPD 270 Query: 260 GID--SGFHEGIISRYGLDSDVARIEILGQFPQQEV-NNFIPHNYIEEAMSREAIDDLYA 316 +D + E ++++ ++ + + + + R Sbjct: 271 RMDLWDRWEELLLNQGKEAAEAFYRKNQAHMETGAEVSWPDGRPLYDLMVIRARDGHAAF 330 Query: 317 PLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDW 348 + D D+ + + +W Sbjct: 331 DSELQNDP--LSDDEAPFAKVIVFWVNRLAEW 360 >gi|209876996|ref|XP_002139940.1| ATPase family protein [Cryptosporidium muris RN66] gi|209555546|gb|EEA05591.1| putative ATPase family protein [Cryptosporidium muris RN66] Length = 1072 Score = 40.7 bits (93), Expect = 0.33, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 59/221 (26%), Gaps = 24/221 (10%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 ++++GRG GK+ + L + +I + + +S+ H Sbjct: 304 ISLTSGRGRGKSAAL-GLALSGAISYGYSNIFITSPYPENVSTVFEFVEVGLISLGYTEH 362 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC---RTYSEERPDTFVGPHNTHGMAVF 196 S + + + I +T P+ + V Sbjct: 363 KHFELIRSKILTDIRVGGGKSHVNSHLIRINIFKEHRQTIQYISPEDYKLVS--QAELVV 420 Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY-----------DIFNIPL 245 DEA+ P L + + +IM+S T G + Sbjct: 421 MDEAAAIP-------LPIVRKFLGSHIFIMSSTTNGYEGTGRALSVKLISELKKSCSSLK 473 Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 + + + +E I G + ++L Sbjct: 474 NGIVDSNGISPSTSFKEINLNEPIRYGKGDPVEKWLYDLLC 514 >gi|164656581|ref|XP_001729418.1| hypothetical protein MGL_3453 [Malassezia globosa CBS 7966] gi|159103309|gb|EDP42204.1| hypothetical protein MGL_3453 [Malassezia globosa CBS 7966] Length = 1517 Score = 40.7 bits (93), Expect = 0.33, Method: Composition-based stats. Identities = 25/230 (10%), Positives = 56/230 (24%), Gaps = 31/230 (13%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GMS 109 +QL+ + + +N G+GKT + +M +L Sbjct: 629 PYQLKGLSWLANLYEQGINGILADEM--------GLGKTVQSISLMAYLAEVHDIWGPFL 680 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 +I A++ E++K++ L ++ + + + D Sbjct: 681 VIAPASTLHN----WQQEITKFVPALKALPYWGNVKDRAILRKF---WNRKQISYDRDAP 733 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 T + + DEA + + ++T Sbjct: 734 FHVLVTSYQLVVSDEKYFQRVKWQYMVLDEAQAIKSSSSN-RWKTLLGFHCRNRLLLTGT 792 Query: 230 TRRLNGWFYDIFNIPLEDW---KRYQIDTRTVEGIDSGFHEGIISRYGLD 276 + N E W S + I + + Sbjct: 793 P---------VQNSMQELWALLHFIMPSLFDSHDEFSEWFSKDIENHAEN 833 >gi|320354338|ref|YP_004195677.1| flagellar biosynthesis protein FlhG [Desulfobulbus propionicus DSM 2032] gi|320122840|gb|ADW18386.1| flagellar biosynthesis protein (FlhG) [Desulfobulbus propionicus DSM 2032] Length = 299 Score = 40.7 bits (93), Expect = 0.33, Method: Composition-based stats. Identities = 24/236 (10%), Positives = 70/236 (29%), Gaps = 13/236 (5%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRG-IGKTTLNAWMMLWLIST 104 EH +P Q + A++ + ++++G+G +GKT + A + + + Sbjct: 3 EHTGRPTD-QAGTLRAMNSPRLTEERTRQAATRVVSVTSGKGGVGKTAVVANLAV--LLA 59 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 R G ++ + + ++ ++ H+F + E ++ Sbjct: 60 RMGKRVLILDADLGLANIDVVFGLAPSHNL---NHFFTGEQGLETILTDGPEGIKILPAG 116 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224 + + R + N V D +G + + F Sbjct: 117 SGVQRFTRLDSEQKMRLLEGLDAMNNDFDFVLIDTEAGISENVTY-----FNTAAQEILV 171 Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280 + T + + Y + + + + + + + + ++ Sbjct: 172 VTTPDPTAITDA-YALMKLLSNQYHEKHFNLIVNFIRNEEEALDVYRKLTMVANRY 226 >gi|282721431|gb|ADA83879.1| gp53 [Mycobacterium phage Fang] Length = 598 Score = 40.7 bits (93), Expect = 0.33, Method: Composition-based stats. Identities = 19/169 (11%), Positives = 45/169 (26%), Gaps = 13/169 (7%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q E +EA++ H V + + G GK+T+ + R ++ Sbjct: 41 RPYQREAVEAIESHWSQGVT-------RVGVVLPTGTGKSTVIGRTAVNGYQNREP--VL 91 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 +A+ + + P + + A ++ ++ + + Sbjct: 92 MVAHRGELIDQMAGTIF----EVDPSIPRSHVGIVRAEMDDHSAPIVVATLQTLATAHRR 147 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220 + V G E G D + + Sbjct: 148 EAVGFRRRILWDEVHHAGAEGFHTTFTELGGYTDALFAGFTATMRRDDK 196 >gi|269963602|ref|ZP_06177925.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269831615|gb|EEZ85751.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 430 Score = 40.7 bits (93), Expect = 0.33, Method: Composition-based stats. Identities = 27/272 (9%), Positives = 78/272 (28%), Gaps = 38/272 (13%) Query: 87 GIGKTTLNAWMMLWLIST------RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 G GKT + M+ + R + +A + E+++ ++ + + Sbjct: 48 GTGKTAAFSLPMIQRLLDSGRNASRKTARALIMAPT---------RELAEQIADNI-KAY 97 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + +LS+ ++ Q +++ + E + + DEA Sbjct: 98 TKYTNLSVAAIFGGRKMPSQISALENGVDILVATPGRLEEHIEQGNVSVANIEFLVFDEA 157 Query: 201 SGT-PDIINKSILGFFTELNPNRFWIMTSNTRRLN-GWFYDIFNIPLEDWKRYQIDTRTV 258 ++ +++ + +M S T + + + +T Sbjct: 158 DRILDMGFINAVRKIMLDVDTDPQIMMFSATTSTQLNVLARDILRKPKRIEVERANTTAQ 217 Query: 259 EG------IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY----------- 301 +D ++S + ++ + + + + Sbjct: 218 TVAHVLYPVDQERKTELLSELIGRKNWKQVLVFVNYKETANDVVKELKLDGIKAVVCHGD 277 Query: 302 -IEEAMSREAIDDLYA--PLIMGCDIAGEGGD 330 + A R + +++ D+A G D Sbjct: 278 RAQSARRRALEEFKTGKVRVMVATDVAARGLD 309 >gi|197286326|ref|YP_002152198.1| plasmid ATP-dependent helicase [Proteus mirabilis HI4320] gi|194683813|emb|CAR44896.1| putative plasmid ATP-dependent helicase [Proteus mirabilis HI4320] Length = 987 Score = 40.7 bits (93), Expect = 0.33, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 64/235 (27%), Gaps = 22/235 (9%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 + I+ G+GKT ++ LI G I+ +A + E Sbjct: 149 PRQRILIADAVGLGKTLEAGILVSELIRRGKGKRILVLAVK--SMLTQFQKEF------- 199 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH---NTHG 192 F + L +G + +Y + H + + Sbjct: 200 --WSRFSIPLTRLDSTGIQQVRNRIPTNHNPFYYYDKAIISIDTLKQDVEYRHYLESAYW 257 Query: 193 MAVFNDEASGTPD---IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249 + DEA + +S L + ++++ + L+ Sbjct: 258 DIIVIDEAHNVAERGSHSQRSKLAKLLARRSDTLVMLSATPHDGKAESFASLMNMLDA-- 315 Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE 304 + F + + DV + G+FP++ ++ +E Sbjct: 316 --TAIANPSDYSYDDFKDKNLVVRRFKKDVKDQMV-GEFPERHIDRVYAKASAQE 367 >gi|121704896|ref|XP_001270711.1| DEAD/DEAH box helicase, putative [Aspergillus clavatus NRRL 1] gi|119398857|gb|EAW09285.1| DEAD/DEAH box helicase, putative [Aspergillus clavatus NRRL 1] Length = 1761 Score = 40.7 bits (93), Expect = 0.33, Method: Composition-based stats. Identities = 19/190 (10%), Positives = 47/190 (24%), Gaps = 21/190 (11%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P WQ + ++ + + A GKT ++ + M ++ + Sbjct: 707 PDEWQRQVLDEL------------DKEHSIFVVAPTSAGKTFISFYAMKKILQEDNDGVL 754 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + +A ++ + +++ P R ++H + + + + Sbjct: 755 VYVAPTKALVNQIAAEIHARFRKSYPDRSH--KTVWAIHTRDIRINDPMKCQILVTVPHL 812 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNR-FWIMT 227 + S T+ + DE D Sbjct: 813 LQIMLLSPFNATTW----APRVKCIIFDEIHSIGHTDEGLVWEQLLLLAPCRIIALSATV 868 Query: 228 SNTRRLNGWF 237 N W Sbjct: 869 GNPAEFADWL 878 >gi|15643994|ref|NP_229043.1| ATP-dependent DNA helicase [Thermotoga maritima MSB8] gi|4981792|gb|AAD36313.1|AE001779_15 ATP-dependent DNA helicase [Thermotoga maritima MSB8] Length = 648 Score = 40.7 bits (93), Expect = 0.33, Method: Composition-based stats. Identities = 49/307 (15%), Positives = 98/307 (31%), Gaps = 28/307 (9%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 E+ +P L F+E +D V S +C + AG G GKT + + + +L++ Sbjct: 3 EYRIRPREANLSFLEDLDEEQRRAVVESEG---RCIVIAGPGSGKTRVITYKIAYLLANG 59 Query: 106 -PGMSIICIANSETQLKNTLWA---EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161 I+ + + + + + LS + + + + L Y L Sbjct: 60 VDPSRILLVTFTRAAAREMVERAKAVTGRELSEMLAGTFHHVCNHFLRKYAPYVGLERNY 119 Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221 +D + R + + + P ++ L Sbjct: 120 SILDREDAESLMRHARSKYLERKSKEERKNF---------PQPSVLMAIYSYMKNTLKSL 170 Query: 222 RFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR 281 R I+ N + F D+ E + Y+ + R+ +D R ++ R Sbjct: 171 RESIVVKNPK-----FLDLKEEISEIFDLYEQEKRSQNVVDYEDLLFYAYRLFEENKEIR 225 Query: 282 IEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNI 341 +F V+ F NY++ + I+ G D + RG Sbjct: 226 DREAERFLWILVDEFQDTNYVQYKIVEHLSSKHGN--ILAV-----GDDAQSIYSFRGAR 278 Query: 342 IEHIFDW 348 E++ D+ Sbjct: 279 YENVEDF 285 >gi|323463426|gb|ADX75579.1| putative helicase [Staphylococcus pseudintermedius ED99] Length = 954 Score = 40.7 bits (93), Expect = 0.33, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 63/184 (34%), Gaps = 31/184 (16%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P+ Q E + +++ + + I + G GKT ++A + Sbjct: 223 PNMMQQEALRELEMIRQQGES-------RGLIISATGTGKTIMSALDV----RQVQPEKF 271 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + + ++E L+ + + +L P+G + L +K+ Sbjct: 272 LFVVHNEGILRRAM----EDYRRVLADE-----------PAGAFGLLTGNDKQTTAKYLF 316 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 T +T S+ PD + H + DEA + + +FT P MT+ Sbjct: 317 STIQTISK--PDIYEQFSREHFDYIVFDEAHRVAAASYRRVFNYFT---PEFILGMTATP 371 Query: 231 RRLN 234 R + Sbjct: 372 ERND 375 >gi|308158882|gb|EFO61442.1| U5 small nuclear ribonucleoprotein 200 kDa helicase, putative [Giardia lamblia P15] Length = 1567 Score = 40.7 bits (93), Expect = 0.33, Method: Composition-based stats. Identities = 27/210 (12%), Positives = 49/210 (23%), Gaps = 17/210 (8%) Query: 66 CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS-----TRPGMSIICIANSETQL 120 V + ++A G GKT + W ++ L+ P I +A + + Sbjct: 214 VQMRVVDPIFNGGNTLVAAPTGAGKTNIALWAIICLLHTSRYKCHPVQLAIYVAPLKALV 273 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT----- 175 L S + + A + I T Sbjct: 274 HEVLLQLESSLQRLPKEYVATIYEYTGEESISLNAISSLLHSPQTATTLVILVATPEKLD 333 Query: 176 --YSEERPDTFVGPHNTHGMAVFNDEASGTPDII----NKSILGFFTELNPNRFWIMTSN 229 S+ + F + DE D + ++ F + S Sbjct: 334 VLTSKLTGEDFQTIRGR-LALIVFDELHLIGDHTRGSVVEELVLRFHRHYKETMLLALSA 392 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 T D + + R V Sbjct: 393 TIPNAQQIADFLQCASSNTLVFDSSYRAVS 422 >gi|322688258|ref|YP_004207992.1| helicase [Bifidobacterium longum subsp. infantis 157F] gi|322690268|ref|YP_004219838.1| helicase [Bifidobacterium longum subsp. longum JCM 1217] gi|291517673|emb|CBK71289.1| DNA or RNA helicases of superfamily II [Bifidobacterium longum subsp. longum F8] gi|320455124|dbj|BAJ65746.1| putative helicase [Bifidobacterium longum subsp. longum JCM 1217] gi|320459594|dbj|BAJ70214.1| putative helicase [Bifidobacterium longum subsp. infantis 157F] Length = 1068 Score = 40.7 bits (93), Expect = 0.33, Method: Composition-based stats. Identities = 33/221 (14%), Positives = 64/221 (28%), Gaps = 35/221 (15%) Query: 16 HEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFS-QPHRWQLEFMEAVDVHCHSNVNNSN 74 + FK P + E QP+ Q E + + + Sbjct: 221 LTEEWIKQYEEDFK---KYAPPRHEILQSFEGHDIQPNAMQQEALANLKKLREQGEH--- 274 Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 + I + G GKT L+A + + ++ IA Q + L ++ + + Sbjct: 275 ----RAIIVSATGTGKTYLSA----FDVRECQPKRMLYIA----QQQMILQTAMNSYQKV 322 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 L S D ++ T +T +P+ + Sbjct: 323 LGCD------------ESELGLYSGTSKQQDRRYVFATVQTMR--QPEVLAQFKSDEFDY 368 Query: 195 VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 V DE + ++ F + + MT+ R +G Sbjct: 369 VLVDEVHHAGAEGYQRVINHFKDAD--FMLGMTATPERTDG 407 >gi|269963883|ref|ZP_06178195.1| hypothetical protein VME_45790 [Vibrio harveyi 1DA3] gi|269831370|gb|EEZ85517.1| hypothetical protein VME_45790 [Vibrio harveyi 1DA3] Length = 581 Score = 40.7 bits (93), Expect = 0.33, Method: Composition-based stats. Identities = 23/211 (10%), Positives = 58/211 (27%), Gaps = 35/211 (16%) Query: 27 SFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFK------C 80 F N + + G P W++ + ++ +++ + + C Sbjct: 71 DFCNKFLFHIKGELAGSPFLLP----PWEIFLLGSIFGWRKKRLSSYSKKKLRRFKTAEC 126 Query: 81 AISAGRGIGKTTLNAWMMLWLISTRP--GMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 ++ R GK+ + + +M+W + G I A + Q + + + L P Sbjct: 127 WVA--RKNGKSFIASAVMIWCLLFDSENGSEIYSAATTRDQAR-ITADDAMRILRGSPLA 183 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 ++ + + + H + + D + D Sbjct: 184 QL--------------CKINKYHVEVPETHGVLRALSADGGSLD------GLNVHLGVLD 223 Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSN 229 E ++ T + S Sbjct: 224 ELHAHKQRDVYDVITTATGAREQPIIFVIST 254 >gi|149237126|ref|XP_001524440.1| hypothetical protein LELG_04412 [Lodderomyces elongisporus NRRL YB-4239] gi|146451975|gb|EDK46231.1| hypothetical protein LELG_04412 [Lodderomyces elongisporus NRRL YB-4239] Length = 536 Score = 40.7 bits (93), Expect = 0.33, Method: Composition-based stats. Identities = 17/123 (13%), Positives = 38/123 (30%), Gaps = 12/123 (9%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 ++ G+GKT + + +ML + P I+ +A ++ V++ + Sbjct: 148 NLLVALPTGLGKTFIASTVMLNFLRWFPKSKIVFMAPTK--------PLVAQQIKACCSI 199 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 +++ E + I + E F + + D Sbjct: 200 TGIPASKVAILL----DETRKNRGEIWNSRQVFFTTPQVVENDLAFGLVNPKSISLLVID 255 Query: 199 EAS 201 EA Sbjct: 256 EAH 258 >gi|109391899|ref|YP_655149.1| gp53 [Mycobacterium phage Orion] gi|88910441|gb|ABD58369.1| gp53 [Mycobacterium phage Orion] gi|255928272|gb|ACU41889.1| gp52 [Mycobacterium phage Puhltonio] Length = 567 Score = 40.7 bits (93), Expect = 0.33, Method: Composition-based stats. Identities = 19/169 (11%), Positives = 45/169 (26%), Gaps = 13/169 (7%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q E +EA++ H V + + G GK+T+ + R ++ Sbjct: 10 RPYQREAVEAIESHWSQGVT-------RVGVVLPTGTGKSTVIGRTAVNGYQNREP--VL 60 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 +A+ + + P + + A ++ ++ + + Sbjct: 61 MVAHRGELIDQMAGTIF----EVDPSIPRSHVGIVRAEMDDHSAPIVVATLQTLATAHRR 116 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220 + V G E G D + + Sbjct: 117 EAVGFRRRILWDEVHHAGAEGFHTTFTELGGYTDALFAGFTATMRRDDK 165 >gi|7507255|pir||T33655 hypothetical protein T06A10.1 - Caenorhabditis elegans (fragment) gi|25396141|pir||D88912 protein T06A10.1 [imported] - Caenorhabditis elegans Length = 1031 Score = 40.7 bits (93), Expect = 0.33, Method: Composition-based stats. Identities = 18/158 (11%), Positives = 45/158 (28%), Gaps = 13/158 (8%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPG--MSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + A G GKT + + + + + +R +I + E+S + Sbjct: 52 MLVQAKSGTGKTLVFSVLAVENLDSRSSHIQKVIVT-PT---------REISVQIKETVR 101 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + S++ G +L + ++ + + + +H Sbjct: 102 KVAPTGARTSVYVGGSAHKLNLIDLK-QTRPQIVIGTPGRIAQLVKLGAMNMSHVDFFVL 160 Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 DEA D + + + P + + Sbjct: 161 DEADKLMDEVFRDDINIIINSLPQIRQVAVFSATYPRN 198 >gi|325186784|emb|CCA21330.1| PREDICTED: similar to activating signal cointegrator 1 complex subunit 3 putative [Albugo laibachii Nc14] Length = 2134 Score = 40.7 bits (93), Expect = 0.34, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 41/160 (25%), Gaps = 11/160 (6%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 + A G GKT + ML +S R +I + L+ + ++W + H Sbjct: 1269 VLLCAPNGSGKTLCAEFAMLRALSMRTRKWMIYVTP----LQEIALSTANRWRRVFEDEH 1324 Query: 140 W-------FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 F+ S S S + + T E + Sbjct: 1325 TVKCGIWCFDSGSRSSSISEFEYAIGRPQDVHGMGIIVTTAGRLDELLRRPIMKQIFPEL 1384 Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232 V D+ D + S+ R Sbjct: 1385 ALVIVDDLHFITDPNVGPLYEIVLSRLARVESGRLSDPTR 1424 >gi|260948128|ref|XP_002618361.1| hypothetical protein CLUG_01820 [Clavispora lusitaniae ATCC 42720] gi|238848233|gb|EEQ37697.1| hypothetical protein CLUG_01820 [Clavispora lusitaniae ATCC 42720] Length = 1910 Score = 40.7 bits (93), Expect = 0.34, Method: Composition-based stats. Identities = 16/125 (12%), Positives = 34/125 (27%), Gaps = 14/125 (11%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLIS-TRPGMSIICIANSETQLKNTLWAEVSKWL-SMLP 136 + + G GKT + A + +W PG ++ IA + ++ V W + Sbjct: 1129 NVFVGSPTGSGKT-VVAELAIWHAFKEFPGSKVVYIAPMKALVRER----VDDWRTRLCK 1183 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 ++ + + + R + + V Sbjct: 1184 PTGRKLVELTGDSLPEARDVRESDIIITTPEKFDGISRNWQTRKFV-------QEISLVI 1236 Query: 197 NDEAS 201 DE Sbjct: 1237 MDEIH 1241 >gi|242021722|ref|XP_002431292.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus corporis] gi|212516560|gb|EEB18554.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus corporis] Length = 591 Score = 40.7 bits (93), Expect = 0.34, Method: Composition-based stats. Identities = 23/197 (11%), Positives = 52/197 (26%), Gaps = 25/197 (12%) Query: 15 LHEMLMHAECVLSFKNFVM--RFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNN 72 L+E + +L + + KG F +P Q + + Sbjct: 10 LNEKPRTDDVILDDEIYFKDLLLSDLTFKGLESCGFRKPSPVQRKAI------------P 57 Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR-PGMSIICIANSETQLKNTLWAEVSKW 131 F + A G GKT + + L ++ + + ++ ++ + E+S Sbjct: 58 LGRCGFDLIVQAKSGTGKTCVFTIVALEMMDSDSDNLQVLILSPT---------REISVQ 108 Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191 + + ++L + L+ K + Sbjct: 109 IKDVISAIGKNFKNLKVSAFIGGMPLV-TDKKNIKKCQIAVGAPGRVKHLIEEGSMKVDS 167 Query: 192 GMAVFNDEASGTPDIIN 208 DEA + Sbjct: 168 IRLFVLDEADKLMEESF 184 >gi|206600344|ref|YP_002241364.1| gp54 [Mycobacterium phage Chah] gi|206287432|gb|ACI12774.1| gp54 [Mycobacterium phage Chah] gi|282721535|gb|ADA83982.1| gp53 [Mycobacterium phage Scoot17C] Length = 598 Score = 40.7 bits (93), Expect = 0.34, Method: Composition-based stats. Identities = 19/169 (11%), Positives = 45/169 (26%), Gaps = 13/169 (7%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q E +EA++ H V + + G GK+T+ + R ++ Sbjct: 41 RPYQREAVEAIESHWSQGVT-------RVGVVLPTGTGKSTVIGRTAVNGYQNREP--VL 91 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 +A+ + + P + + A ++ ++ + + Sbjct: 92 MVAHRGELIDQMAGTIF----EVDPSIPRSHVGIVRAEMDDHSAPIVVATLQTLATAHRR 147 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220 + V G E G D + + Sbjct: 148 EAVGFRRRILWDEVHHAGAEGFHTTFTELGGYTDALFAGFTATMRRDDK 196 >gi|327355031|gb|EGE83888.1| DNA replication helicase Dna2 [Ajellomyces dermatitidis ATCC 18188] Length = 1653 Score = 40.7 bits (93), Expect = 0.34, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 35/118 (29%), Gaps = 3/118 (2%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTT A ++ G S++ + + T + N L + L ++ Sbjct: 1141 GTGKTTTIAHII--RALISQGKSVLLTSYTHTAVDNILLKVKDDNIRTLRLGATTKIHPD 1198 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + A + + + + + ++ DEAS Sbjct: 1199 VQKFADLAATPKKTIEELRDIYENSRIVATTCLGINHP-IFNSRTFDYCIVDEASQIT 1255 >gi|310819811|ref|YP_003952169.1| phage terminase, ATPase subunit [Stigmatella aurantiaca DW4/3-1] gi|309392883|gb|ADO70342.1| phage terminase, atpase subunit [Stigmatella aurantiaca DW4/3-1] Length = 433 Score = 40.7 bits (93), Expect = 0.34, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 61/215 (28%), Gaps = 20/215 (9%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 N + F+ ++ R +G + L A L R G + + ++ + + + Sbjct: 63 DNRSRFR-WVAKSRQVGFSFLFALEALARCHLRDGHTAVFVSYNLSDAVEKV-------- 113 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 L R +E L+ E + ++K R S P G Sbjct: 114 --LIARQVYEELPLAFKKKLVTDAKTELAFESNAK-----GRRLSRIISVPSKPPRGKRG 166 Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY- 251 A ++ A D + + S G F++I + L + + Sbjct: 167 DAYLDELAHYVNDREVYTGSTALILR-SHGQLTGCSTPLGRRGIFWEIASQELRKYPHHT 225 Query: 252 --QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 Q+ + + ++ + Sbjct: 226 RQQVPWWLCRFFSLDVRRAAVEAPLMSTEERVVRF 260 >gi|300675501|gb|ADK26420.1| polyprotein [Dengue virus 3] gi|316983435|gb|ADU76207.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.7 bits (93), Expect = 0.34, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 47/185 (25%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + + T P + + DEA D Sbjct: 1724 ------------EHTGREIADLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|263612920|gb|ACY70760.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.7 bits (93), Expect = 0.34, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 47/185 (25%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ + Sbjct: 1670 GSGKTRKYLPAIIREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTVTKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|261402374|ref|YP_003246598.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus vulcanius M7] gi|261369367|gb|ACX72116.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus vulcanius M7] Length = 404 Score = 40.7 bits (93), Expect = 0.34, Method: Composition-based stats. Identities = 22/185 (11%), Positives = 43/185 (23%), Gaps = 23/185 (12%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 F +P Q + + A G GKT A ++ LI+ Sbjct: 25 GFEKPTDIQTKVI-----------PLFLNGEKNIVAQARTGSGKTASFALPLIELINEGE 73 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 G+ I + + E++ + + ++ + Sbjct: 74 GIKAIILTPTRELAIQVA-DEINS----------LKGNKNLKIVKVYGGTPIQPQIKYLK 122 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNRFWI 225 + + DEA + N NR + Sbjct: 123 NANIVVGTPGRVLDHINRGTLNLKDVEYFILDEADEMLNMGFIDDVEKILNACNKNRRIL 182 Query: 226 MTSNT 230 + S T Sbjct: 183 LFSAT 187 >gi|239613455|gb|EEQ90442.1| DNA replication helicase Dna2 [Ajellomyces dermatitidis ER-3] Length = 1575 Score = 40.7 bits (93), Expect = 0.34, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 35/118 (29%), Gaps = 3/118 (2%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTT A ++ G S++ + + T + N L + L ++ Sbjct: 1063 GTGKTTTIAHII--RALISQGKSVLLTSYTHTAVDNILLKVKDDNIRTLRLGATTKIHPD 1120 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + A + + + + + ++ DEAS Sbjct: 1121 VQKFADLAATPKKTIEELRDIYENSRIVATTCLGINHP-IFNSRTFDYCIVDEASQIT 1177 >gi|261194643|ref|XP_002623726.1| DNA replication helicase Dna2 [Ajellomyces dermatitidis SLH14081] gi|239588264|gb|EEQ70907.1| DNA replication helicase Dna2 [Ajellomyces dermatitidis SLH14081] Length = 1575 Score = 40.7 bits (93), Expect = 0.34, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 35/118 (29%), Gaps = 3/118 (2%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTT A ++ G S++ + + T + N L + L ++ Sbjct: 1063 GTGKTTTIAHII--RALISQGKSVLLTSYTHTAVDNILLKVKDDNIRTLRLGATTKIHPD 1120 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + A + + + + + ++ DEAS Sbjct: 1121 VQKFADLAATPKKTIEELRDIYENSRIVATTCLGINHP-IFNSRTFDYCIVDEASQIT 1177 >gi|322388624|ref|ZP_08062224.1| helicase [Streptococcus infantis ATCC 700779] gi|321140544|gb|EFX36049.1| helicase [Streptococcus infantis ATCC 700779] Length = 966 Score = 40.7 bits (93), Expect = 0.34, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 57/187 (30%), Gaps = 32/187 (17%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +P++ Q E ++ + S K + + G GKT L+A + + Sbjct: 235 EPNKMQKEALKGLQAIRDSGKK-------KALVISATGTGKTYLSA----FDVQQFEPKR 283 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ I + E L + + +L P + + K+ Sbjct: 284 MLFIVHREQ----ILQKSLKDFQKVL------------QFPESEGLIYHSGADLTNKKYI 327 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 T +T S + + + DE K + NP F MT+ Sbjct: 328 FATIQTLSRDSHLNLFTE--NYFDYILIDEVHKAGADSYKKV---MAHFNPEFFLGMTAT 382 Query: 230 TRRLNGW 236 R +G Sbjct: 383 PERTDGQ 389 >gi|263613066|gb|ACY70764.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.7 bits (93), Expect = 0.34, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 47/185 (25%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ + Sbjct: 1670 GSGKTRKYLPAIIREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTVTKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|194207332|ref|XP_001915885.1| PREDICTED: Fanconi anemia, complementation group M [Equus caballus] Length = 2127 Score = 40.7 bits (93), Expect = 0.34, Method: Composition-based stats. Identities = 27/276 (9%), Positives = 70/276 (25%), Gaps = 32/276 (11%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +QL A + G+GKT + A +M P ++ Sbjct: 169 RDYQLRIARA-------------ALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVV 215 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 +A ++ + ++ ++ + + E+ + + Sbjct: 216 FMAPTKPLVTQ----QIEACYRVMGIPQPDMAEMTGCIQAFTRKEIWRSKRVLFLTPQVM 271 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASG-TPDIINKSILGFFTELNPNRFWIMTSNT 230 P + DEA + ++ + + + S T Sbjct: 272 VNDLSRGSCP-------AAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFRILALSAT 324 Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI---DSGFHEGIISRYGLDSDVARIEILGQ 287 + I + ++ + I + + A + Q Sbjct: 325 P-GSDIKAVQQVITNLLIGQIELRSEDSPDILPYSHERRVEKLVVPLGEELAAIQKAYIQ 383 Query: 288 FPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCD 323 + ++ I N ++ R+ +I+ D Sbjct: 384 ILETFASSLIQRNVLKR---RDIPSLTKYQIILARD 416 >gi|195013317|ref|XP_001983833.1| GH16116 [Drosophila grimshawi] gi|193897315|gb|EDV96181.1| GH16116 [Drosophila grimshawi] Length = 1166 Score = 40.7 bits (93), Expect = 0.34, Method: Composition-based stats. Identities = 25/203 (12%), Positives = 52/203 (25%), Gaps = 27/203 (13%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 W + ++ N+ I G GKT +L L+ PG ++ Sbjct: 676 PWFNPQLNSIQKRAIYNILRGESDRIPYVIFGPPGTGKTVTLVETVLQLVYNLPGARVLV 735 Query: 113 IANSETQLKNTLWAEVSKWLS------MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 S + + + L + E + + A + + Sbjct: 736 GTPSNSSADLITKRIIDSNVLQPGEFVRLVSHNQVEKDLVPPELMNYCATIEIGILDDSH 795 Query: 167 KHYTITCRTYSEERPDTFVGPH-------------------NTHGMAVFNDEASGTPDII 207 +T P F+G H + H + DEA + Sbjct: 796 DSIIVTDSGLKLRCPANFLGKHRVTISTCSTLGNFIQMDFPSGHFTHLLIDEAGQCTEP- 854 Query: 208 NKSILGFFTELNPNRFWIMTSNT 230 ++++ I+ + Sbjct: 855 -ETMVPIALVAQKRSQVILAGDP 876 >gi|120610382|ref|YP_970060.1| putative terminase large subunit protein [Acidovorax citrulli AAC00-1] gi|120588846|gb|ABM32286.1| putative terminase large subunit protein [Acidovorax citrulli AAC00-1] Length = 539 Score = 40.7 bits (93), Expect = 0.34, Method: Composition-based stats. Identities = 45/336 (13%), Positives = 79/336 (23%), Gaps = 60/336 (17%) Query: 2 PRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQ--PHRWQLEFM 59 P ++ TD E EL LM E L F + + G P+R Q F+ Sbjct: 21 PTMVPTD---EAELARCLMDPEWRL-FSGCLYQIIVKGESDDDDSFVMPFKPNRAQRRFI 76 Query: 60 EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119 + + I R +G TTL A M L IA Sbjct: 77 MRLWN--------------RNLILKARQLGFTTLIALMWLDHALFNGNQRCGMIAQDRET 122 Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 + +V LP ++ + + + Sbjct: 123 AEAIFRDKVVFAYDHLPEEIRQRF--------PLARASTKELLFAHNNSSLRVATSVRGG 174 Query: 180 RPDTFVGPHNTHGMAVFNDEASGT----PDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 E P + + G F + + ++ S +G Sbjct: 175 TIHRLH-----------VSEFGKICAKFPHKAVEVVTGSFQAVPLSGIIVVESTAEGQDG 223 Query: 236 WFYDIFNIP-----------LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 FY + ++ + ++S+ D + Sbjct: 224 EFYRMCQRAMALVTGAGRLTASQYRFHFYAWWQDPAYRMDPAGVVVSQELQDYFDEIESL 283 Query: 285 LGQFPQQEVNNFIPHNY------IEEAMSREAIDDL 314 +G + E+ M RE Sbjct: 284 MGCTIDTGQRAWYVEKLNNDFAGAEDQMWREYPSTP 319 >gi|89072912|ref|ZP_01159469.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34] gi|89051434|gb|EAR56889.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34] Length = 432 Score = 40.7 bits (93), Expect = 0.34, Method: Composition-based stats. Identities = 27/306 (8%), Positives = 82/306 (26%), Gaps = 42/306 (13%) Query: 57 EFMEAV-DVHCHSNVNNSNPTIFK---CAISAGRGIGKTTLNAWMMLWLISTRPGMS--- 109 + + + + P + A G GKT + ++ + +P Sbjct: 14 KALTEIGYEKLTPVQQKAIPQARRGADILALAQTGTGKTAAFSLPIIQKLIEKPKSKSRF 73 Query: 110 ---IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 + +A + E+++ ++ + + + ++ ++ Q ++ Sbjct: 74 NVRALILAPT---------RELAEQIANNINE-YAKYTDVNCTAIFGGKKMSSQEKRLEQ 123 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN----KSILGFFTELNPNR 222 + + + DEA D+ + IL Sbjct: 124 GVDILVATPGRLIEHMELNNVSLANLEFLVFDEADRMLDMGFIGAIRVILEDIRTKPQTM 183 Query: 223 FWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLD---SDV 279 + TS+ + + + T+ + E + Sbjct: 184 LFSATSSPQMNSLASDILHKPQRITVTPENSTADTIAHVVYPVDEDRKREMLSELIGKKN 243 Query: 280 ARIEILGQFPQQEVNNFI-------------PHNYIEEAMSREAID--DLYAPLIMGCDI 324 + ++ ++ N + + + A R + + A +++ ++ Sbjct: 244 WKQVLVFVNYKESANQLVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKARVMVATEV 303 Query: 325 AGEGGD 330 A G D Sbjct: 304 AARGLD 309 >gi|315657178|ref|ZP_07910062.1| superfamily II DNA or RNA helicase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492281|gb|EFU81888.1| superfamily II DNA or RNA helicase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 931 Score = 40.7 bits (93), Expect = 0.35, Method: Composition-based stats. Identities = 31/316 (9%), Positives = 71/316 (22%), Gaps = 42/316 (13%) Query: 39 GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98 G P++ W + H G GK+ + + Sbjct: 15 GALTDPVQVLLAFQEWAESTGRPLYPHQQEAAERLILEDKHLIAPTPTGSGKSLIGVAAI 74 Query: 99 LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 LW ++ G A + + + V F ++ + Sbjct: 75 LWSLAR--GGVSYYTAPLKALVSEKFFDLV----------DLFGAANVGMVTGDGSVNAD 122 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG--TPDIINKSILGFFT 216 + ++ + ++ + V DE P+ T Sbjct: 123 APIICATAEILANQALRWGDDL----------NVDTVVMDEFHYYADPERGWAWQAPLLT 172 Query: 217 ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLD 276 +++ S T WF + ++ + + + Sbjct: 173 L--TKTRFVLMSATLGDTSWFAKNLREVTGREVAVLDSAKRPVPLEMSYAAEPLEKILQG 230 Query: 277 SDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 + + + + A EA L +G D D + Sbjct: 231 LA---------NQDRLPAYVVHPS--QRAAVEEAERIASLDLRLGLD-----SDTAARLK 274 Query: 337 RRGNIIEHIFDWSAKL 352 + N + + L Sbjct: 275 DQVNTVRFHSSFGKTL 290 >gi|159109491|ref|XP_001705010.1| U5 small nuclear ribonucleoprotein 200 kDa helicase, putative [Giardia lamblia ATCC 50803] gi|157433087|gb|EDO77336.1| U5 small nuclear ribonucleoprotein 200 kDa helicase, putative [Giardia lamblia ATCC 50803] Length = 1594 Score = 40.7 bits (93), Expect = 0.35, Method: Composition-based stats. Identities = 28/210 (13%), Positives = 51/210 (24%), Gaps = 17/210 (8%) Query: 66 CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS-----TRPGMSIICIANSETQL 120 V + ++A G GKT + W M+ L+ RP ++ +A + + Sbjct: 240 VQMRVVDPIFNGGNTLVAAPTGAGKTNIALWAMICLLHTSRYKCRPAQLVVYVAPLKALV 299 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT----- 175 L S + + + + I T Sbjct: 300 HEILSQLESSFQRLPKEYTATICEYTGEESISLNTISSLLHCPQTTTALVILVATPEKLD 359 Query: 176 --YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT----ELNPNRFWIMTSN 229 S+ + F N + DE D S++ + S Sbjct: 360 VFTSKLTGEDFQLIRNR-LALIVFDELHLIGDHTRGSVIEELVLRFHRHYQEAMLLALSA 418 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 T D + + R V Sbjct: 419 TIPNVQQIADFLRCASSNTLAFDSSYRAVS 448 >gi|310778216|ref|YP_003966549.1| PhoH family protein [Ilyobacter polytropus DSM 2926] gi|309747539|gb|ADO82201.1| PhoH family protein [Ilyobacter polytropus DSM 2926] Length = 435 Score = 40.7 bits (93), Expect = 0.35, Method: Composition-based stats. Identities = 20/183 (10%), Positives = 52/183 (28%), Gaps = 12/183 (6%) Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGR-GIGKTTLNAWMMLWLISTRP-GMSIICIANS 116 + A + ++ + GR G GKT L L + R + Sbjct: 223 VRARNDEQEYAMDLLMDDNIRVITLVGRAGTGKTLLAVATGLEQVVERKKYKKLFIARPI 282 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 K+ + + ++ + + ++ + + Sbjct: 283 IPMGKDIG-------YLPGSEKEKLKPWMQPIYDNIDFLSENKEDKAGEKVVMGLESLGL 335 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236 + T++ + + DEA + K+I T + + T + +++ Sbjct: 336 LKIEALTYIRGRSIPAGFIIIDEAQNLTPLEIKTI---VTRAGEDTKIVFTGDPDQIDSP 392 Query: 237 FYD 239 + D Sbjct: 393 YLD 395 >gi|308063540|gb|ADO05427.1| hypothetical protein HPSAT_03445 [Helicobacter pylori Sat464] Length = 1604 Score = 40.7 bits (93), Expect = 0.35, Method: Composition-based stats. Identities = 27/203 (13%), Positives = 55/203 (27%), Gaps = 41/203 (20%) Query: 29 KNFVMRFFPWGIKG-------KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81 ++F+ W PL +P Q+E ++A + N Sbjct: 144 EDFIYSQIDWEKFDPMQTQGELPLCDKKKPRPHQIEAIKATKEYFSDPKNTRGK-----L 198 Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK-----WLSMLP 136 I A G GKT + L ++ + +A S L + E ++ + + + Sbjct: 199 IMAC-GTGKTYTS----LKIMEALDPKITLFLAPSIALLSQ-TFREYAQEKSEPFYASIV 252 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGI------------------DSKHYTITCRTYSE 178 + ++ + + ++K + I S Sbjct: 253 CSDDKVGKGKKNKNDDGTDDINFSELPLKPSTRPEDILSVHEKAQKENKRFIIFSTYQSA 312 Query: 179 ERPDTFVGPHNTHGMAVFNDEAS 201 R + DEA Sbjct: 313 LRIQEAQEVGLGEMDLIICDEAH 335 >gi|307706117|ref|ZP_07642936.1| type III restriction enzyme, res subunit [Streptococcus mitis SK321] gi|307618517|gb|EFN97665.1| type III restriction enzyme, res subunit [Streptococcus mitis SK321] Length = 881 Score = 40.7 bits (93), Expect = 0.35, Method: Composition-based stats. Identities = 21/245 (8%), Positives = 54/245 (22%), Gaps = 30/245 (12%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q + ++ + + ++A G GKTT+ + R + Sbjct: 11 RNYQKQVLDNFQEYQADGHVH--------LVAAP-GSGKTTIG-----IELIARFDKPAL 56 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI--DSKHY 169 + + ++ + + ++ + + + Sbjct: 57 VLVPT-VTIREQWVDRIRQAFLEDENQVTSLVSQNLKDMKQITIATYQAFHSAMQQVQSQ 115 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 D + DE + KS+ F + +T+ Sbjct: 116 EDNGEVEDFVGFDLLARLKERGVETLCLDECHHLRNEWWKSLEDFRKNYQQLQIISLTAT 175 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 + D E + D + FP Sbjct: 176 PPYDSEPELW-------DRYLQMCGEIDQEITVPELVKEDTLCPHQD------FVYICFP 222 Query: 290 QQEVN 294 +E + Sbjct: 223 TKEED 227 >gi|52425046|ref|YP_088183.1| hypothetical protein MS0991 [Mannheimia succiniciproducens MBEL55E] gi|52307098|gb|AAU37598.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 760 Score = 40.7 bits (93), Expect = 0.35, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 47/185 (25%), Gaps = 14/185 (7%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET---QLKNTLWAEVSK 130 P +F + G GKT + L + II + + Q + Sbjct: 257 EPGLFSLTV--PTGGGKTFTSMAFALEHAKKYGMLRIIYVIPFTSIIEQNAQEFRKAFGE 314 Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE----ERPDTFVG 186 + H L +L S D T + E ++ Sbjct: 315 FGEAAVLEHHSTFDDEKLLDKDTKDKLKLASENWDMPIVVTTAVQFFESLFADKSSRCRK 374 Query: 187 PHNTHGMAVFNDEASGTPDI----INKSILGFFTELNPNRFWIMTSNTRRLNGW-FYDIF 241 HN + DEA P I +SI + + + FY F Sbjct: 375 LHNIANSVIILDEAQMLPLNLLLPIMQSIKELARNYHSSIVMCTATQPAIQTQHGFYRGF 434 Query: 242 NIPLE 246 E Sbjct: 435 ENVRE 439 >gi|39996964|ref|NP_952915.1| phenylacetate-coenzyme A ligase [Geobacter sulfurreducens PCA] gi|39983852|gb|AAR35242.1| phoH family protein [Geobacter sulfurreducens PCA] gi|298505981|gb|ADI84704.1| PhoH-related ATPase [Geobacter sulfurreducens KN400] Length = 440 Score = 40.7 bits (93), Expect = 0.35, Method: Composition-based stats. Identities = 20/154 (12%), Positives = 44/154 (28%), Gaps = 10/154 (6%) Query: 87 GIGKTTLN-AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 G GKT L A + ++ ++ L L W + Sbjct: 256 GTGKTLLAIAAGLHKTAEENVYNRLLVSRPVFPMGRD-LGFLPGDIEEKL--TPWMQPIF 312 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 ++ E + + + + P T++ + + DEA Sbjct: 313 DNVELLLSGHEAEK---RHSKGYKELMAMGIMDIEPLTYIRGRSIPLQFMIVDEAQNLTP 369 Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239 K+I T ++T + +++ + D Sbjct: 370 HEIKTI---ITRAGEGTKIVLTGDPYQIDNPYVD 400 >gi|301786799|ref|XP_002928821.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group M protein-like [Ailuropoda melanoleuca] Length = 2048 Score = 40.7 bits (93), Expect = 0.35, Method: Composition-based stats. Identities = 19/196 (9%), Positives = 52/196 (26%), Gaps = 13/196 (6%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + G+GKT + A +M P ++ +A ++ + ++ ++ Sbjct: 108 CNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQ----QIEACYRVMGI 163 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + + E+ + + P + Sbjct: 164 PQSHMAEMTGSTQAFIRKEIWRSKRVLFLTPQVMVNDLSRGACP-------AAEIKCLVI 216 Query: 198 DEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256 DEA + ++ + + + S T + I + ++ + Sbjct: 217 DEAHKALGNYAYCQVVRELVKYTNHFRILALSATP-GSDIKAVQQVITNLRIGQIELRSE 275 Query: 257 TVEGIDSGFHEGIISR 272 I HE + + Sbjct: 276 DSPDILPYSHERQVEK 291 >gi|298346309|ref|YP_003718996.1| helicase [Mobiluncus curtisii ATCC 43063] gi|298236370|gb|ADI67502.1| helicase [Mobiluncus curtisii ATCC 43063] Length = 931 Score = 40.7 bits (93), Expect = 0.35, Method: Composition-based stats. Identities = 23/211 (10%), Positives = 47/211 (22%), Gaps = 26/211 (12%) Query: 39 GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98 G P+E W + H G GK+ + + Sbjct: 15 GALTDPVEVLLAFQEWAESTGRPLYPHQQEAAERLILEDKHLIAPTPTGSGKSLIGVAAI 74 Query: 99 LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 LW ++ G A + + + V F ++ + Sbjct: 75 LWSLAR--GGVSYYTAPLKALVSEKFFDLV----------DLFGAANVGMVTGDGSVNAD 122 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG--TPDIINKSILGFFT 216 + ++ + ++ + V DE P+ T Sbjct: 123 APIICATAEILANQALRWGDDL----------NVDTVVMDEFHYYADPERGWAWQAPLLT 172 Query: 217 ELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247 +++ S T WF Sbjct: 173 L--TKTRFVLMSATLGDTTWFAKNLREVTGR 201 >gi|239624401|ref|ZP_04667432.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520787|gb|EEQ60653.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 468 Score = 40.7 bits (93), Expect = 0.36, Method: Composition-based stats. Identities = 22/178 (12%), Positives = 43/178 (24%), Gaps = 7/178 (3%) Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GMSIICIANSETQLK 121 + + G KT + L + P II + Q Sbjct: 253 FLQEALMQPAEQAPLVIVKGMAGTAKTFYTLAVGLEKLLNNPTGEYRRIIISRPN-AQFD 311 Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 + + + +L + E + K I R + Sbjct: 312 TDIGFLPGDEQEKISPLMRPVIDNLEQLIDSCEEKRYENETELKGKVDEIFDRGLIQAEA 371 Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239 F+ + + DEA + G T I+ + +++ F D Sbjct: 372 LNFIRGRSIVRTYLIIDEAQNMTPAQ---VKGIITRAGKGTKIILLGDPNQIDRNFLD 426 >gi|254465635|ref|ZP_05079046.1| EcoEI R C-terminal domain protein [Rhodobacterales bacterium Y4I] gi|206686543|gb|EDZ47025.1| EcoEI R C-terminal domain protein [Rhodobacterales bacterium Y4I] Length = 816 Score = 40.7 bits (93), Expect = 0.36, Method: Composition-based stats. Identities = 16/196 (8%), Positives = 49/196 (25%), Gaps = 14/196 (7%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 +P +Q+ + A + + + G GKT A+ ++W + Sbjct: 158 FASGKEPRYYQMNAVNASIEAIAKGRD-------RLLLVMATGTGKTF-TAFQIIWRLWK 209 Query: 105 -RPGMSIICIANSETQLKNTLWAEVSKWLSMLPH-----RHWFEMQSLSLHPSGWYAELL 158 ++ +A+ + T+ + ++ + + + Sbjct: 210 SGKKKRVLFLADRNVLVDQTMVNDFRPFIGSMAKLSTNAKTIERPDGTEEELTLAMDRRR 269 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218 + + T E + + DE + + Sbjct: 270 RINTAYEIYLGLYQALTGPRESQKIYRELSPDFFDLIIIDECHRGSAAEDSAWREILEHF 329 Query: 219 NPNRFWIMTSNTRRLN 234 + +T+ + Sbjct: 330 SSATQIGLTATPKETE 345 >gi|119487463|ref|XP_001262524.1| RNA helicase/RNAse III, putative [Neosartorya fischeri NRRL 181] gi|158705692|sp|A1D9Z6|DCL2_NEOFI RecName: Full=Dicer-like protein 2; Includes: RecName: Full=Endoribonuclease dcl2; Includes: RecName: Full=ATP-dependent helicase dcl2 gi|119410681|gb|EAW20627.1| RNA helicase/RNAse III, putative [Neosartorya fischeri NRRL 181] Length = 1388 Score = 40.7 bits (93), Expect = 0.36, Method: Composition-based stats. Identities = 25/201 (12%), Positives = 53/201 (26%), Gaps = 30/201 (14%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI-ST 104 QP +QLE +EA ++ G GKT + + + Sbjct: 11 ASPYQPRNYQLEMLEA-------------SMKENIIVAMDTGSGKTHIAVLRIKAELDIC 57 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 P + +A + L ++ L + R + + L + + Sbjct: 58 PPDKLVWFLAPTVA-LCIQQHEVIASNLPAVRTRTLTGLDKVELWTEQSIWDAVL----- 111 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS------ILGFFTEL 218 + + I + + + DEA + T+ Sbjct: 112 -NGYRVIVSTHAVLADALSHGFVKMSRLALLIFDEAHHCTRRHAANKIMRDFYHPTLTKS 170 Query: 219 NP---NRFWIMTSNTRRLNGW 236 P R +T++ + Sbjct: 171 GPGAVPRIMGLTASPVVRSNH 191 >gi|108864385|gb|ABG22485.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group] Length = 1132 Score = 40.7 bits (93), Expect = 0.36, Method: Composition-based stats. Identities = 21/188 (11%), Positives = 46/188 (24%), Gaps = 8/188 (4%) Query: 99 LWLISTRPGMSIICIANSETQLKNT--LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156 L+++ + + Q + E+ +LP + L PS Sbjct: 127 LYIMEQFHDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVVGCIIAKLPPS----- 181 Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII-NKSILGFF 215 + Y T +++ P+ + + + Sbjct: 182 WRSFGPEQEKGKYKAQQTTNFKKQKKNNNNPNQDERTCFVCGQPGHLARKCPQRKGMKTP 241 Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275 T + NT +G+ F+ P +W + F + + Sbjct: 242 TSQTSKSANVTIGNTGDRSGYGRTGFHRPSGEWVTCFYSWCWHGRYEVYFGKDRAAEERA 301 Query: 276 DSDVARIE 283 R E Sbjct: 302 TCPFYRQE 309 >gi|85858291|ref|YP_460492.1| superfamily I DNA/RNA helicase [Syntrophus aciditrophicus SB] gi|85721382|gb|ABC76325.1| superfamily I DNA and RNA helicase [Syntrophus aciditrophicus SB] Length = 287 Score = 40.7 bits (93), Expect = 0.36, Method: Composition-based stats. Identities = 28/227 (12%), Positives = 57/227 (25%), Gaps = 14/227 (6%) Query: 15 LHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSN 74 + E L A S + V + K L + P W +E+++ ++ + Sbjct: 12 MAEALHLAMAYFSLERDVFISHWLPERQKELARQTTPESW-RNIVESLNNPVQQHIVTDD 70 Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLIS-TRPGMS-IICIANSETQLKNTLWAEVSKWL 132 + AG G GKT + + +L+ R I+ +A + Sbjct: 71 REKTNVLVLAGPGSGKTRVLVHRIAYLVRVKRENARGILALAYNRHAAVEIRRRLADLIG 130 Query: 133 SMLPHRHWFEMQSLSLHPSG---WYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189 +L++ +G + E P Sbjct: 131 DDARGVTVLTCHALAMRLAGVSFAGHTEMLDDDAFKKVLQQAVALLKREGLPPEEADEQR 190 Query: 190 THGMA----VFNDEASGTPDIINKSILGFF----TELNPNRFWIMTS 228 +A + DE + I + + Sbjct: 191 DRLLAGFRWILVDEYQDIGPEQYELISALAGRTSQDEDGRLSLFAVG 237 >gi|88803430|ref|ZP_01118956.1| putative phosphate starvation-inducible PhoH-like protein [Polaribacter irgensii 23-P] gi|88780996|gb|EAR12175.1| putative phosphate starvation-inducible PhoH-like protein [Polaribacter irgensii 23-P] Length = 317 Score = 40.7 bits (93), Expect = 0.36, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 42/144 (29%), Gaps = 17/144 (11%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT + + + + II + +N L + L Sbjct: 136 GTGKTYTAVALAVKALKEKEVRKIILTRPAVESGEN------------LGFLPGDLKEKL 183 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + Y L + M + + + + P F+ V DEA T Sbjct: 184 DPYMQPLYDAL--RDMIPHERLESHIEKGIIQIAPLAFMRGRTLDNAFVILDEAQNTTHN 241 Query: 207 INKSILGFFTELNPNRFWIMTSNT 230 K T + + +I+T + Sbjct: 242 QMKMF---LTRMGKSAKFIITGDP 262 >gi|303244918|ref|ZP_07331244.1| helicase domain protein [Methanothermococcus okinawensis IH1] gi|302484735|gb|EFL47673.1| helicase domain protein [Methanothermococcus okinawensis IH1] Length = 797 Score = 40.7 bits (93), Expect = 0.36, Method: Composition-based stats. Identities = 21/197 (10%), Positives = 50/197 (25%), Gaps = 14/197 (7%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 G G+GKT + A + + + ++ ++ +A S V + + L + F Sbjct: 36 GTGLGKTAI-ATLTIAGMLSKKDGKVLIVAPSR--------PLVEQHYNSLKN---FLNI 83 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + + E + M + DEA T Sbjct: 84 DEDKIIVLTGKIAPSKRKKMWEEGQIFIATPQIVENDIVANRVNTNDFMLLIADEAHHTT 143 Query: 205 DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264 + + + N +T++ +I + + + D Sbjct: 144 GNHSYTFVASVF-RNKAHVLGLTASPGSNIDKILEICENLGIEHVEIR-TYDDADVRDYV 201 Query: 265 FHEGIISRYGLDSDVAR 281 + Sbjct: 202 KTVKLRPVKVELPKEYE 218 >gi|296450396|ref|ZP_06892152.1| ATP-dependent RNA helicase DeaD [Clostridium difficile NAP08] gi|296879481|ref|ZP_06903475.1| ATP-dependent RNA helicase DeaD [Clostridium difficile NAP07] gi|296260657|gb|EFH07496.1| ATP-dependent RNA helicase DeaD [Clostridium difficile NAP08] gi|296429627|gb|EFH15480.1| ATP-dependent RNA helicase DeaD [Clostridium difficile NAP07] Length = 497 Score = 40.7 bits (93), Expect = 0.36, Method: Composition-based stats. Identities = 20/235 (8%), Positives = 52/235 (22%), Gaps = 13/235 (5%) Query: 60 EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-SIICIANSET 118 + V + + G GKT A + I+ + + + Sbjct: 23 YNIPSRVQIEVIPKLLNGQNLVVKSKTGSGKTASFAIPLCENINVEYNNIQALIVVPTRE 82 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 E+S + R + + + + + Sbjct: 83 LALQV-KDEISSIGRLRKVRCSAIFGKQPIKEQIA---------ELKQRVHIVVATPGRI 132 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIMTSNT-RRLNGW 236 + DEA + + L + + S T + Sbjct: 133 IDHINKGTIKLEDIKYLIIDEADKMFNKGFVEQMEKILLNLPKEKIVGLFSATIDEEIKY 192 Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291 + + + + T + + I + + + I + P+ Sbjct: 193 ICEKYIPDYSVINIEENKSDTNQRTRQIDDKIIKTNEREKYILLKELIYSENPKS 247 >gi|195014606|ref|XP_001984044.1| GH15223 [Drosophila grimshawi] gi|193897526|gb|EDV96392.1| GH15223 [Drosophila grimshawi] Length = 675 Score = 40.7 bits (93), Expect = 0.36, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 49/159 (30%), Gaps = 16/159 (10%) Query: 60 EAVDVHCHSNVNNSNPTIFK-CAISAGRGIGKTTLNAWMMLWLISTRPGMS-----IICI 113 AV + P + +SA G GKT A ++ L++ R ++ + Sbjct: 168 RAVIPWILEAQSKPAPFRPRDICVSAPTGSGKTLAFAIPIVQLLANRVECKVRALVVLPV 227 Query: 114 ANSETQLKN---TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 A Q+ L ++ + +L +H E + L + + Sbjct: 228 AELALQVYKVFSVLCSKTELEVCLLSKQHRLEDEQEKLLEQYKGVYYSKVDI-------V 280 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209 +T + G + DEA D + + Sbjct: 281 VTTPGRLVDHLHATEGFCLKSLQFLVIDEADRIMDAVFQ 319 >gi|32442174|gb|AAP82049.1| putative mating pair formation protein [Stenotrophomonas maltophilia] Length = 330 Score = 40.7 bits (93), Expect = 0.36, Method: Composition-based stats. Identities = 15/115 (13%), Positives = 32/115 (27%), Gaps = 7/115 (6%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 + + G G GKTTL+ ++ + P I+ I ++ A V + + + Sbjct: 153 SRKNILVVGGTGSGKTTLSNAIIHAISQEHPNDRILIIEDTGELQCAAANAVVMRAVEDV 212 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190 + E+ ++ P H+ Sbjct: 213 TMERLLKASLRLRPDRILVGEV-------RDGSALTLIEAWNTGHPGGIATIHSD 260 >gi|15836655|ref|NP_297343.1| DNA-dependent helicase II [Xylella fastidiosa 9a5c] gi|9104818|gb|AAF82863.1|AE003859_4 DNA helicase II [Xylella fastidiosa 9a5c] Length = 728 Score = 40.7 bits (93), Expect = 0.36, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 78/294 (26%), Gaps = 32/294 (10%) Query: 62 VDVHCHSNVNNSNPTIF-KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 V H + N + I AG G GKT + ++WL + + + Sbjct: 6 VLDHLNQNQREAVAAAPGHYLILAGAGSGKTRVLTHRIVWLNEVH-------GVPTHSMM 58 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 T +K + R +++ W + + H+ + + Sbjct: 59 AVTF---TNKAAGEIQQRIDLQLRHGKRGM--WIGTFHSLAHRLLRLHWNDATLPENFQV 113 Query: 181 PDTFVGPHNTHGM---AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 D+ + ND P + + I + W Sbjct: 114 IDSDDQLRLVKRVIQSLGLNDTL--FPPKQAMWWINTQKDEGRRPEHI---QPESHDDWI 168 Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297 + YQ +D D+ +F + ++ F Sbjct: 169 ----ETQRRIYAEYQERCNRAGLVDFAELLLRAHELLRDTPALLTHYRSRFREILIDEFQ 224 Query: 298 PHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 N I+ A R ++ ++ G D + RG +EH+ + Sbjct: 225 DTNAIQYAFVRILANETGH--VIAV-----GDDDQAIYGWRGAKVEHVQHFLKD 271 >gi|308184455|ref|YP_003928588.1| type II R-M system protein [Helicobacter pylori SJM180] gi|308060375|gb|ADO02271.1| type II R-M system protein [Helicobacter pylori SJM180] Length = 677 Score = 40.7 bits (93), Expect = 0.36, Method: Composition-based stats. Identities = 30/198 (15%), Positives = 52/198 (26%), Gaps = 35/198 (17%) Query: 29 KNFVMRFFPWGIKG-------KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81 ++F+ W PL +P Q E +E + + N Sbjct: 145 EDFIYSRIDWEKFDPTKTEDEIPLCDKKRPRPHQTEAIEKTKEYFSNPKNARGK-----L 199 Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML------ 135 I A G GKT + L ++ + +A S L T + Sbjct: 200 IMAC-GTGKTYTS----LKIMEALEPKITLFLAPSIALLSQTFREYAQEKSEPFYASIVC 254 Query: 136 ----------PHRHWFEMQSLSLHPSGWYAELLEQSMGI--DSKHYTITCRTYSEERPDT 183 + L + S ++L + ++K + I S R Sbjct: 255 SDDKVGKSKDEDNDDIKFSELPIKASTRLEDILSVYEKVQKENKRFIIFSTYQSALRIKE 314 Query: 184 FVGPHNTHGMAVFNDEAS 201 + DEA Sbjct: 315 AQEAGLNGIDLIICDEAH 332 >gi|291334806|gb|ADD94448.1| phage terminase GpA [uncultured phage MedDCM-OCT-S05-C64] Length = 513 Score = 40.7 bits (93), Expect = 0.36, Method: Composition-based stats. Identities = 23/242 (9%), Positives = 63/242 (26%), Gaps = 19/242 (7%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +P W+ + + +S ++ + + GKT + + W+I PG Sbjct: 37 EPGPWRTD--RTPYLRQVMRDLSSESSVQRVVLMFSAQSGKTEVGLNWLAWIIDHSPGP- 93 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ + + + + + P A + Sbjct: 94 LLAVQPTIEMARRMSKQRLEGLIEDTP------------RLKEKIAPPRSRDGSNSMFAK 141 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN----PNRFWI 225 ++ + +F DE +I + E R + Sbjct: 142 DFPGGILLLTGANSPSQLRSAPCRYLFMDEVDAMQEIPGEGDPVALAERRTTTFARRKVL 201 Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285 +TS + + + + K + E + + ++ + + Sbjct: 202 LTSTPTVKDFSKIEAEYMKSDQRKFWIPAPCCGEFQHLEWSRLKWEKDRPETAQYQCKHC 261 Query: 286 GQ 287 G+ Sbjct: 262 GE 263 >gi|325171219|ref|YP_004251191.1| hypothetical protein ViPhICP2p20 [Vibrio phage ICP2] gi|323512245|gb|ADX87702.1| conserved hypothetical protein [Vibrio phage ICP2] Length = 508 Score = 40.7 bits (93), Expect = 0.36, Method: Composition-based stats. Identities = 25/217 (11%), Positives = 57/217 (26%), Gaps = 17/217 (7%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF-EM 143 RG K+ + A + W ++ P +I+ I+ + + L+ + S + R+W + Sbjct: 51 PRGHLKSHMMALWVAWWVTKHPETTILYISATSELAEMQLYDIKNIMTSKIYRRYWPDMI 110 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 W + + G H V + Sbjct: 111 NEEEGKREKWTNSAIAVDHPKRKMEGVRDFTIKTAGLTTNTTGWHAD----VIISDDVVV 166 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGW-----FYDIFNIPLEDWKRYQIDTRTV 258 PD TE + S + P + + ++ + V Sbjct: 167 PDNAY-------TEDGRRKVAAAMSQMESILNADGIVKACGTRYHPADIYDTWKNQHQPV 219 Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN 295 + + V + + +P+ + Sbjct: 220 FDEHGEETGEERPVWDIFERVVEEDGVFLWPRTSRGS 256 >gi|206602216|gb|EDZ38698.1| Putative phosphate starvation-inducible protein (PhoH) [Leptospirillum sp. Group II '5-way CG'] Length = 331 Score = 40.7 bits (93), Expect = 0.36, Method: Composition-based stats. Identities = 30/198 (15%), Positives = 59/198 (29%), Gaps = 23/198 (11%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT L M ++ + II + + + L + + Sbjct: 138 GTGKTYLAMAMAVFYLLKHSFRRIILVRPA------------VEAGEKLGFLPGDIAEKI 185 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + + Y L M K + + E P F+ + V DEA + Sbjct: 186 NPYLRPLYDALF--DMIDVDKVNRMIDKREIEIAPLAFMRGRTLNDSFVILDEAQ---NA 240 Query: 207 INKSILGFFTELNPNRFWIMTSN------TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 + + F T + N ++T + + ++ NI + V+ Sbjct: 241 TIEQMKMFLTRIGFNSKAVITGDVTQIDLPQGRTSGLIEVQNILKNISGIEFLYFNEVDV 300 Query: 261 IDSGFHEGIISRYGLDSD 278 + + II Y + Sbjct: 301 VRHRLVQEIIKAYERYEN 318 >gi|124515712|gb|EAY57221.1| putative phosphate starvation-inducible protein (PhoH) [Leptospirillum rubarum] Length = 331 Score = 40.7 bits (93), Expect = 0.36, Method: Composition-based stats. Identities = 30/198 (15%), Positives = 59/198 (29%), Gaps = 23/198 (11%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT L M ++ + II + + + L + + Sbjct: 138 GTGKTYLAMAMAVFYLLKHSFRRIILVRPA------------VEAGEKLGFLPGDIAEKI 185 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + + Y L M K + + E P F+ + V DEA + Sbjct: 186 NPYLRPLYDALF--DMIDVDKVNRMIDKREIEIAPLAFMRGRTLNDSFVILDEAQ---NA 240 Query: 207 INKSILGFFTELNPNRFWIMTSN------TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 + + F T + N ++T + + ++ NI + V+ Sbjct: 241 TIEQMKMFLTRIGFNSKAVITGDVTQIDLPQGRTSGLIEVQNILKNISGIEFLYFNEVDV 300 Query: 261 IDSGFHEGIISRYGLDSD 278 + + II Y + Sbjct: 301 VRHRLVQEIIKAYERYEN 318 >gi|17507621|ref|NP_491574.1| hypothetical protein F55A12.8 [Caenorhabditis elegans] gi|21363098|sp|O01757|YIL8_CAEEL RecName: Full=UPF0202 protein F55A12.8 gi|2088668|gb|AAB54126.1| Hypothetical protein F55A12.8 [Caenorhabditis elegans] Length = 1043 Score = 40.7 bits (93), Expect = 0.36, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 44/153 (28%), Gaps = 15/153 (9%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 Q + + +N C+++AGRG GK+ + L +I Sbjct: 255 TACQAKALLRFLDVITEKQSNVT-----CSLTAGRGRGKSAAV-GLSLAGAIAFGYTNIF 308 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + S LK V + + Q + + A ++ + + Sbjct: 309 VTSPSPENLKTLFEFVVKGF-------DALDYQEHTDYELIQSANPEFKNCLVRINVFRE 361 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 +T P + DEA+ P Sbjct: 362 HKQTIQYISPTDVQKLG--QCELIVIDEAAAIP 392 >gi|323487890|ref|ZP_08093148.1| DNA/RNA helicase [Planococcus donghaensis MPA1U2] gi|323398624|gb|EGA91412.1| DNA/RNA helicase [Planococcus donghaensis MPA1U2] Length = 809 Score = 40.7 bits (93), Expect = 0.37, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 44/185 (23%), Gaps = 36/185 (19%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P Q E +EA+D + + G+GKT L A+ + Sbjct: 215 PRPAQEEALEALDNVLAE-------EYSRAMVVLATGLGKTYLAAFFAAKF------KRV 261 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + +A+ E L + H + D+ Sbjct: 262 LFVAHREEILTQ--------------------AEQSFKHVHPNRTSSFYNASEKDTAADF 301 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 + Y+ + DE + P +T+ Sbjct: 302 VFASIYTLSSQYHLDRFEKDAFDLIVVDEFHHAAAPTYGRL---LNHFEPKFMLGITATP 358 Query: 231 RRLNG 235 R++ Sbjct: 359 DRMDN 363 >gi|304395420|ref|ZP_07377303.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB] gi|304356714|gb|EFM21078.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB] Length = 460 Score = 40.7 bits (93), Expect = 0.37, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 57/223 (25%), Gaps = 22/223 (9%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR--------GIGKTTLNAWMMLWLI-STR 105 QL+ + + + V + AI GR G GKT +L I STR Sbjct: 14 QLDNLREMGYTSMTPVQAATLP----AILQGRDVRAQAKTGSGKTAAFGIGLLHHIDSTR 69 Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 + + + ++L F L G ++ + Sbjct: 70 FQTQALILCPTRELADQV--------GNVLRQLARFTRNIKVLTLCGGQPMSAQRDSLVH 121 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225 + + + DEA ++ + + E P Sbjct: 122 P-PHIVVGTPGRILDHINRENLKLDQLNTLVLDEADRMLEMGFLNDMETIIEATPASRQT 180 Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG 268 + + +G + + + ID F E Sbjct: 181 LLFSATWPDGITAISTRFQRDALSVVTEEVSELPSIDQQFFEA 223 >gi|302896542|ref|XP_003047151.1| hypothetical protein NECHADRAFT_46398 [Nectria haematococca mpVI 77-13-4] gi|256728079|gb|EEU41438.1| hypothetical protein NECHADRAFT_46398 [Nectria haematococca mpVI 77-13-4] Length = 971 Score = 40.7 bits (93), Expect = 0.37, Method: Composition-based stats. Identities = 32/247 (12%), Positives = 67/247 (27%), Gaps = 33/247 (13%) Query: 87 GIGKTTLNAWMMLWLISTRPGMS-----------IICIANSETQL---------KNTLWA 126 G+GKT ++ P ++ + Q +A Sbjct: 229 GLGKTITTLACIV----GHPPEKEDRDEFSRATLVVVGGPQDAQQWADQTERHCDEKFFA 284 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 + + + +P W Q H + + + + + Sbjct: 285 KTTIYSKKIP---WRAAQWGRRHIELVAQFPNKNVIQALRGQWAGDPVGFERALQENLGQ 341 Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI-----F 241 + V DEA + + + L + + WI++ + Y F Sbjct: 342 LFKINWYRVVLDEAHSIKNRTSSTTLACWQL-SAKFRWIVSGTPISNTFYPYLRFLGCSF 400 Query: 242 NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNY 301 + L+ +K +D G ++ R D I+ + ++P Sbjct: 401 AVNLKKFKSEYMDGGHSNGNFEALVSLVMYRRKQDETFLGRRIVSLPESHSHDLWVPLED 460 Query: 302 IEEAMSR 308 E AM R Sbjct: 461 WEMAMMR 467 >gi|14548160|gb|AAA93186.2| DEAD family RNA helicase [uncultured crenarchaeote 4B7] Length = 451 Score = 40.7 bits (93), Expect = 0.37, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 48/218 (22%), Gaps = 23/218 (10%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 A G GKT ML I G+ + IA + E+ K Sbjct: 45 QAHTGTGKTAAFGIPMLQNIIHGGGIQGLVIAPTRELAMQIT-EEIKKVGK--------- 94 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS- 201 + + + Q + K + + V DEA Sbjct: 95 YTKIKVVTVYGGQGIGIQLDALRRKPEIVVATPGRLIDHLDNGSIRTDNIKHVVLDEADV 154 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSN--TRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 + I ++ NR + S + N + Sbjct: 155 MLDMGFIEDIEYVLQKIPGNRITSLWSATMPPEILRLSDKYLNNAKN-------ILIDSD 207 Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297 + + + + L F Q I Sbjct: 208 DLSGEGIDQAFLVIKDRE---KHKYLTDFINQNKGQVI 242 >gi|332883475|gb|EGK03758.1| hypothetical protein HMPREF9456_01825 [Dysgonomonas mossii DSM 22836] Length = 1116 Score = 40.7 bits (93), Expect = 0.37, Method: Composition-based stats. Identities = 43/293 (14%), Positives = 89/293 (30%), Gaps = 52/293 (17%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE----------VSKW 131 I G GKT++ A ++ + + +I+ +A + + A ++ Sbjct: 703 IVGPPGTGKTSIFARQLIERLHAKEDSNILVMAYTNRAVDELCAAICEAFSEDDSVCDRY 762 Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE--ERPDTFVGPHN 189 + + E L + Y + + I T + +P+ F H Sbjct: 763 IRIGSELSCGEAYRHRLLQNISYKATNRKDLLQAIASTRIFVGTLASIMGKPELFDLKHF 822 Query: 190 THGMAVFNDEASGTPDIINKSILG-----------------FFTELNPNRFWIMTSN--- 229 DEAS + +L + + ++ N Sbjct: 823 D---VAIIDEASQILESQIIGLLPQFDKFIMIGDHKQLSTITLQDESRSKVDGSILNDIE 879 Query: 230 -TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA----RIEI 284 F +F I + + DT T G +++ + D+ + R + Sbjct: 880 LYDCRESLFERLFRICQKQAWTHAYDTLTYHGRMHQDIARLVNPHFYDNILKIATERQQA 939 Query: 285 LGQFPQQEVNN------------FIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325 +P + N+ FIP I++A + +D A + + IA Sbjct: 940 DLNYPSFDPNDPYQTMISNKRVCFIPVREIDDASVSDKTNDAEAEIAVSLSIA 992 >gi|326794298|ref|YP_004312118.1| PhoH family protein [Marinomonas mediterranea MMB-1] gi|326545062|gb|ADZ90282.1| PhoH family protein [Marinomonas mediterranea MMB-1] Length = 466 Score = 40.7 bits (93), Expect = 0.37, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 47/144 (32%), Gaps = 13/144 (9%) Query: 87 GIGKTTLNAWMML-WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 G GKT L L + + II ++ ++ + ++ M P F+ Sbjct: 285 GSGKTLLALAYALQVTMEEKRFNKIIVARSTPPMAEDIGFLPGTEEEKMAPWLAAFDDNL 344 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 LH + ++ + + + F+ + + + DEA G Sbjct: 345 EILHGADEHSFSSIDYVKQKANIQFKSL---------NFMRGRSFNNALIIIDEAQGLTQ 395 Query: 206 IINKSILGFFTELNPNRFWIMTSN 229 KSI T + N I+ N Sbjct: 396 FQLKSI---VTRIGSNSKIIVLGN 416 >gi|91228785|ref|ZP_01262694.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 12G01] gi|91187660|gb|EAS73983.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 12G01] Length = 430 Score = 40.7 bits (93), Expect = 0.37, Method: Composition-based stats. Identities = 29/272 (10%), Positives = 78/272 (28%), Gaps = 38/272 (13%) Query: 87 GIGKTTLNAWMMLWLIST------RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 G GKT + M+ + R + +A + E+++ ++ + + Sbjct: 48 GTGKTAAFSLPMIQQLLDSNRSASRKTARALILAPT---------RELAEQIADNI-KAY 97 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + +LS+ ++ Q +++ + E H + DEA Sbjct: 98 TKYTNLSVAAIFGGRKMSSQVTALENGVDILVATPGRLEEHIEQGNVSVAHLEFLVFDEA 157 Query: 201 SGTPDIIN--KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 D+ + + ++ T + + + +T Sbjct: 158 DRILDMGFIHAVRKIMLDVDTDPQIMMFSATTSSQLNLLAKDILRKPKRIEVERANTTAQ 217 Query: 259 EGIDSGFHEGIISRYGLDSDV-----ARIEILGQFPQQEVNNFI-------------PHN 300 + + L S++ + ++ ++ N + + Sbjct: 218 TVAHVLYPVDQERKTELLSELIGRKNWKQVLVFVNYKETANEVVKELKLDGIKAVVCHGD 277 Query: 301 YIEEAMSREAID--DLYAPLIMGCDIAGEGGD 330 + A R + A +++ D+A G D Sbjct: 278 RAQSARRRALEEFKSGKARVMVATDVAARGLD 309 >gi|312127369|ref|YP_003992243.1| hypothetical protein Calhy_1153 [Caldicellulosiruptor hydrothermalis 108] gi|311777388|gb|ADQ06874.1| protein of unknown function DUF815 [Caldicellulosiruptor hydrothermalis 108] Length = 440 Score = 40.7 bits (93), Expect = 0.38, Method: Composition-based stats. Identities = 31/237 (13%), Positives = 73/237 (30%), Gaps = 21/237 (8%) Query: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMR-FFPWGIKGKPLEHFSQPHRWQLEFM 59 + + ++ L E L+ F F F W G+ L +L+ + Sbjct: 161 IEKFLNITPWS--SLIEELVEFHRQNGFGIFAKYKGFSW--DGEKLIGIENLDPIRLDSL 216 Query: 60 EAVDVHCHSNVNNSNPT-----IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 +D V N+ + + RG GK++ ++ + G+ ++ + Sbjct: 217 VNIDRQKKIVVENTLAFLNGQRVNNILLYGSRGTGKSSTVKAILNEF--SHKGLRVVEV- 273 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 + QL + + + L +P + + LS L+ + + Sbjct: 274 -FKDQLYT--FPRLIRILRDVPLKFIIFVDDLSFEDIEENYTKLKAILEGSLEAMPQNVV 330 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 Y+ FV + + +DE N ++ + + + + Sbjct: 331 IYATSNRRHFVKERFSDRNGLSDDEVHF-----NDTLEEKLSLADRFGIVVTYPSPT 382 >gi|304395575|ref|ZP_07377458.1| helicase domain protein [Pantoea sp. aB] gi|304356869|gb|EFM21233.1| helicase domain protein [Pantoea sp. aB] Length = 954 Score = 40.7 bits (93), Expect = 0.38, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 61/247 (24%), Gaps = 40/247 (16%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 + I+ G+GKT ++ LI G I+ +A + E Sbjct: 122 PRQRILIADAVGLGKTLEAGILVSELIRRGRGKRILVLAVK--SMLTQFQKEF------- 172 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH---NTHG 192 F + L +G + HY + H N Sbjct: 173 --WSRFAVPLTRLDSAGLQKVRNRIPTNHNPFHYFDKTIISIDTLKQDIEYRHHLENAWW 230 Query: 193 MAVFNDEASGTPDIINKSILGFFTE--LNPNRFWIMTSNTR------------------- 231 + DEA + S+ + + IM S T Sbjct: 231 DIIVIDEAHNVAERGTSSLRSKLAKLLAGRSDTLIMLSATPHDGKAESFASLMNMLDPTA 290 Query: 232 --RLNGWFYDIFNIPLEDWKRYQIDTRT--VEGIDSGFHEG-IISRYGLDSDVARIEILG 286 + Y F +R++ D + + + +V R + Sbjct: 291 IANPKEYEYADFADKNLVVRRFKKDVKDQMAGEFPEREIKELQREATSAEEEVYRRLLES 350 Query: 287 QFPQQEV 293 +F + Sbjct: 351 KFRDDDD 357 >gi|300742505|ref|ZP_07072526.1| ATPase [Rothia dentocariosa M567] gi|300381690|gb|EFJ78252.1| ATPase [Rothia dentocariosa M567] Length = 914 Score = 40.7 bits (93), Expect = 0.38, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 48/166 (28%), Gaps = 27/166 (16%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL------------WAE 127 A+ G GKT L + ++ L++ G + +A S ++N L W Sbjct: 500 VAVQGPPGSGKTFLGSQVIARLVA--EGAKVGVVAQSHAVVENMLTACLERNLFPAEWVM 557 Query: 128 VSKWLSMLPHRHWFEMQS---LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184 +K S LP W E +L + + + G + P+ Sbjct: 558 RAKGKSQLPDYPWVEASDKDLTALLDNSGGSGGEKSGDGTSPGVLFG-GTAWDFANPNR- 615 Query: 185 VGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 + DEA + R ++ + Sbjct: 616 --IPEGSLDLLVIDEAGQFS------LANTLAVGRAARNLLLLGDP 653 >gi|261601998|gb|ACX91601.1| protein of unknown function DUF699 ATPase putative [Sulfolobus solfataricus 98/2] Length = 727 Score = 40.7 bits (93), Expect = 0.38, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 38/132 (28%), Gaps = 21/132 (15%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 I+A RG GK+ + +L+S SII + + + + + + L L ++ Sbjct: 219 LVITAARGRGKSASIGLFLSYLMSEGNFGSIIVTSPTYYSSQEI-FKFIIRGLEALNVKY 277 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + S + + N G + DE Sbjct: 278 KV--------------------ITSRDGKIMKISTRDSRVKWVSPDLAKNEEGDLIVIDE 317 Query: 200 ASGTPDIINKSI 211 A+ I Sbjct: 318 AAAMGIEFLDYI 329 >gi|15897323|ref|NP_341928.1| hypothetical protein SSO0391 [Sulfolobus solfataricus P2] gi|13813538|gb|AAK40718.1| Conserved hypothetical protein [Sulfolobus solfataricus P2] Length = 743 Score = 40.7 bits (93), Expect = 0.38, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 38/132 (28%), Gaps = 21/132 (15%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 I+A RG GK+ + +L+S SII + + + + + + L L ++ Sbjct: 235 LVITAARGRGKSASIGLFLSYLMSEGNFGSIIVTSPTYYSSQEI-FKFIIRGLEALNVKY 293 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + S + + N G + DE Sbjct: 294 KV--------------------ITSRDGKIMKISTRDSRVKWVSPDLAKNEEGDLIVIDE 333 Query: 200 ASGTPDIINKSI 211 A+ I Sbjct: 334 AAAMGIEFLDYI 345 >gi|261492366|ref|ZP_05988927.1| putative helicase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261311970|gb|EEY13112.1| putative helicase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 762 Score = 40.7 bits (93), Expect = 0.38, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 49/179 (27%), Gaps = 14/179 (7%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 +++ G GKT + L II + + ++ AE K L Sbjct: 264 SLTVPTGGGKTFTSMAFALEHAKQYGLCRIIYVIPFTSIIEQNA-AEFRKAFGELGTEAV 322 Query: 141 FEMQSLSLHPSGW-YAELLEQSMGIDSKHYTITCRTYS-------EERPDTFVGPHNTHG 192 E S H S + + + ++ + T +R HN G Sbjct: 323 LEHHSTFDHDSLPDKSSRDKLKLASENWDAPVVVTTAVQFFESLFADRSSCCRKLHNIAG 382 Query: 193 MAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTR-RLNGWFYDIFNIPLE 246 + DEA P I +I + + FY F E Sbjct: 383 SVIILDEAQMLPLNLLRPIMAAIDELARNYQCSVVLCTATQPAIHQANGFYKGFENVRE 441 >gi|260599032|ref|YP_003211603.1| Terminase, ATPase subunit [Cronobacter turicensis z3032] gi|260218209|emb|CBA33092.1| Terminase, ATPase subunit [Cronobacter turicensis z3032] Length = 590 Score = 40.7 bits (93), Expect = 0.38, Method: Composition-based stats. Identities = 33/329 (10%), Positives = 72/329 (21%), Gaps = 46/329 (13%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 F E + + + + R IG T + L G + I ++ S+ Sbjct: 141 FFEESFDYQLRWHRAGLEHRIRDILKS-RQIGATFYFSREALLRALET-GHNQIFLSASK 198 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP-----SGWYAELLEQSMGIDSKH---- 168 TQ ++ E ++ R E+ + + + + Sbjct: 199 TQAY--VFRE---YIIQFARRVDVELSGDPIVIGNNGAKLIFLGTNSNTAQSHNGDLYVD 253 Query: 169 ---YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225 + + + H + S G Sbjct: 254 EIFWIPNFQRLRKVASGMASQKHLRST---YFSTPSTLGHGAFPFWSGELFNKG-RTSAA 309 Query: 226 MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285 + + W++ + G F + R D R + Sbjct: 310 ERVDIDISHAALAGGMLCGDGQWRQIVTIEDALAGGCDLFDLDALKRENSAED-FRNLFM 368 Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLY-----------APLIMGCDIAGEGGDKTVV 334 +F + + P ++ M + P+ +G D + G + Sbjct: 369 CEFVD-DKASVFPFEELQRCMVDSLEEWEDFSPFAARPFGSRPVWIGYDPSHTGD--SAG 425 Query: 335 VFRRGN--------IIEHIFDWSAKLIQE 355 I W Sbjct: 426 CVVLAPPVVSGGKFRILERHQWKGMDFAT 454 >gi|149004108|ref|ZP_01828913.1| prophage LambdaSa2, terminase large subunit, putative [Streptococcus pneumoniae SP14-BS69] gi|147757920|gb|EDK64929.1| prophage LambdaSa2, terminase large subunit, putative [Streptococcus pneumoniae SP14-BS69] Length = 570 Score = 40.7 bits (93), Expect = 0.38, Method: Composition-based stats. Identities = 34/275 (12%), Positives = 70/275 (25%), Gaps = 27/275 (9%) Query: 11 LEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNV 70 E+ + + + L+ V WG + P +E + Sbjct: 54 EEECSNTKGLAGKLRLALPQKVWLETTWGFYHTVEVTKTDPDT-----LEEYKDFEERRL 108 Query: 71 NNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK 130 + P I RG GKTTL + + + I + E L A + Sbjct: 109 IHEVP------IIVPRGTGKTTLGSAI----------GEVGQIIDGEWGADIQLLAYSRE 152 Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190 L + + + + +S T + + + T Sbjct: 153 QAGYLFNASRAMLSNEESLLHYMREADILRSTK--QGILYETTNSLMSIKTSDYEILDGT 210 Query: 191 HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250 + DE D K + + WI + +F+ W Sbjct: 211 NAHYNIFDEVHTYDDDFIKVVNDG--SSRKRKNWITWYISTNGTKR-DKLFDKYYNIWVD 267 Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285 +D + V + + + + + + Sbjct: 268 I-LDEKIVNDSVMPWIYQLDDVSEIHNPDMWQKAM 301 >gi|239827745|ref|YP_002950369.1| DEAD/DEAH box helicase [Geobacillus sp. WCH70] gi|239808038|gb|ACS25103.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. WCH70] Length = 435 Score = 40.7 bits (93), Expect = 0.39, Method: Composition-based stats. Identities = 23/220 (10%), Positives = 54/220 (24%), Gaps = 23/220 (10%) Query: 31 FVMRFF-PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIG 89 F F P+ I+ F +P Q + ++ + G G Sbjct: 6 FERFSFQPFIIEAIKELRFYKPTEIQERIIPSILRGES------------VIGQSQTGTG 53 Query: 90 KTTLNAWMMLWLIS-TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148 KT ++ I + + A + + E+ K + P Sbjct: 54 KTHAYLLPIIEKIDPDHEAVQAVITAPTRELATQI-YHEILKIIKFCPSDRQITA----- 107 Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208 + + + ++ + + + + DEA D+ Sbjct: 108 RCFIGGTDKQKAIEKLKTQPHIVVGTPGRINDLIREQALNVWTATTLVVDEADLMLDMGF 167 Query: 209 KSILGFFTELNPNRFWIMTSN---TRRLNGWFYDIFNIPL 245 + P ++ + +L + P Sbjct: 168 IVDVDQIAARMPKELQMLVFSATIPEKLKPFLKKYMENPK 207 >gi|317491008|ref|ZP_07949444.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920555|gb|EFV41878.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 442 Score = 40.7 bits (93), Expect = 0.39, Method: Composition-based stats. Identities = 24/209 (11%), Positives = 52/209 (24%), Gaps = 20/209 (9%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 SA G GKT +L + P ++ + + AE + L+ + Sbjct: 47 SAPTGTGKTVAYLLPVLQHLLDFPRKKSGPPRVLVLTPTRELAMQV--AEQAIELAKHTN 104 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + + + Q + + T + + Sbjct: 105 LDIATITGGVAYMNHAEVFSENQDI--------VVATTGRLLQYIKEENFDCRAVETLIL 156 Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257 DEA D+ + R M + + L+D + Sbjct: 157 DEADRMLDMGFAQDIETIAAETRWRKQTMLFSATLEGDAIKEFSERLLQDPVEIE---AD 213 Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILG 286 + + Y D+ + ++L Sbjct: 214 PSRRERKKIQQW--YYRADTLEHKTKLLC 240 >gi|302388667|ref|YP_003824488.1| CRISPR-associated HD domain protein [Thermosediminibacter oceani DSM 16646] gi|302199295|gb|ADL06865.1| CRISPR-associated HD domain protein [Thermosediminibacter oceani DSM 16646] Length = 811 Score = 40.7 bits (93), Expect = 0.39, Method: Composition-based stats. Identities = 20/183 (10%), Positives = 45/183 (24%), Gaps = 8/183 (4%) Query: 72 NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL--WAEVS 129 + P ++ G+GKT + L +++ +I +A + L E + Sbjct: 282 RTFPDRLIYSLELATGLGKTLTALRIALEAVASGKCSRVIYVAPYISILSQATNVIREAT 341 Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV---G 186 ++ H H + H T + + P Sbjct: 342 GISDIIEHHHLSFLDIDYEHLRSEEDGAFLIDSWQSKIVTTTFNQFFLALFPTKAQHTVR 401 Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF---WIMTSNTRRLNGWFYDIFNI 243 + V DE + L + T+ + + + + Sbjct: 402 IQALNNAFVIIDEPQIIEPKAWAAFLKTLEAAAKRLHFQSILCTATLPHASDYLNEEYMC 461 Query: 244 PLE 246 Sbjct: 462 LSR 464 >gi|296475200|gb|DAA17315.1| Fanconi anemia, complementation group M [Bos taurus] Length = 348 Score = 40.7 bits (93), Expect = 0.39, Method: Composition-based stats. Identities = 13/125 (10%), Positives = 33/125 (26%), Gaps = 11/125 (8%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + G+GKT + A +M P ++ +A ++ + ++ ++ Sbjct: 111 CNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQ----QIEACYRVMGI 166 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + + E+ + + P + Sbjct: 167 PQSHMAEMTGSTQAFTRKEIWSSKRVLFLTPQVMVNDLSRGACP-------AAEIKCLVI 219 Query: 198 DEASG 202 DEA Sbjct: 220 DEAHK 224 >gi|198469293|ref|XP_001354982.2| GA15175 [Drosophila pseudoobscura pseudoobscura] gi|198146802|gb|EAL32038.2| GA15175 [Drosophila pseudoobscura pseudoobscura] Length = 1009 Score = 40.7 bits (93), Expect = 0.39, Method: Composition-based stats. Identities = 26/207 (12%), Positives = 58/207 (28%), Gaps = 22/207 (10%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 +++A RG GK+ + + +++ + L L+ V K L ++ Sbjct: 275 MSLTAARGRGKSAAL-GLSIAAAVAFGYVNVYVTSPHPENLIT-LFEFVLKGFDALEYQE 332 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + + ++ ++ S+ + + DE Sbjct: 333 HADYTIIRSTNADYKKAIIRINITRSSRQTIQYIAPSDTHLLNAAD--------LLLIDE 384 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 A+ P L ++ M S Y+ L Q+ Sbjct: 385 AAAIP-------LPLVKKMIGPYLVFMASTING-----YEGTGRSLSLKLISQLQKENNA 432 Query: 260 GIDSGFHEGIISRYGLDSDVARIEILG 286 E I + D + I +L Sbjct: 433 RPPLKLDESIRYQENDDIERWLINLLC 459 >gi|195163221|ref|XP_002022450.1| GL13038 [Drosophila persimilis] gi|194104442|gb|EDW26485.1| GL13038 [Drosophila persimilis] Length = 691 Score = 40.7 bits (93), Expect = 0.39, Method: Composition-based stats. Identities = 26/207 (12%), Positives = 58/207 (28%), Gaps = 22/207 (10%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 +++A RG GK+ + + +++ + L L+ V K L ++ Sbjct: 252 MSLTAARGRGKSAAL-GLSIAAAVAFGYVNVYVTSPHPENLIT-LFEFVLKGFDALEYQE 309 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + + ++ ++ S+ + + DE Sbjct: 310 HADYTIIRSTNADYKKAIIRINITRSSRQTIQYIAPSDTHLLNAAD--------LLLIDE 361 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 A+ P L ++ M S Y+ L Q+ Sbjct: 362 AAAIP-------LPLVKKMIGPYLVFMASTING-----YEGTGRSLSLKLISQLQKENNA 409 Query: 260 GIDSGFHEGIISRYGLDSDVARIEILG 286 E I + D + I +L Sbjct: 410 RPPLKLDESIRYQENDDIERWLINLLC 436 >gi|182418672|ref|ZP_02949948.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521] gi|237669697|ref|ZP_04529674.1| cold-shock deAd box protein a [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377449|gb|EDT75004.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521] gi|237654771|gb|EEP52334.1| cold-shock deAd box protein a [Clostridium butyricum E4 str. BoNT E BL5262] Length = 524 Score = 40.7 bits (93), Expect = 0.39, Method: Composition-based stats. Identities = 20/183 (10%), Positives = 47/183 (25%), Gaps = 12/183 (6%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT + +L +ST G+ + +A + E+++ + + Sbjct: 51 GTGKTAAYSLPILTKMSTNKGIKALILAPTRELAVQV-KDEMNR---------LSKYEKA 100 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPD 205 + + Q + + H + DEA Sbjct: 101 EILAVYGGDSIDRQIRALRKGVDVVVGTPGRMLDLIKRKCLHLDSVEFLVLDEADEMLNM 160 Query: 206 IINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264 I + + + ++ + P + + TV I+ Sbjct: 161 GFIDDIESILSHTPEERQTLLFSATMPDPIAKLAKRYMKPDAKLVSVKKSSLTVSKIEQS 220 Query: 265 FHE 267 + Sbjct: 221 YFM 223 >gi|151553733|gb|AAI49287.1| FANCM protein [Bos taurus] Length = 373 Score = 40.7 bits (93), Expect = 0.39, Method: Composition-based stats. Identities = 13/125 (10%), Positives = 33/125 (26%), Gaps = 11/125 (8%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + G+GKT + A +M P ++ +A ++ + ++ ++ Sbjct: 111 CNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQ----QIEACYRVMGI 166 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + + E+ + + P + Sbjct: 167 PQSHMAEMTGSTQAFTRKEIWSSKRVLFLTPQVMVNDLSRGACP-------AAEIKCLVI 219 Query: 198 DEASG 202 DEA Sbjct: 220 DEAHK 224 >gi|221134097|ref|ZP_03560402.1| DNA helicase II [Glaciecola sp. HTCC2999] Length = 722 Score = 40.7 bits (93), Expect = 0.39, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 86/295 (29%), Gaps = 29/295 (9%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 ++ ++ V + I AG G GKT + + WL+ +A + Sbjct: 5 RLLDGLNDKQRQAVAAPAQDM---LILAGAGSGKTRVLVHRIAWLMEVENLSPFSILAVT 61 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 T N E+ + L + + ++ ++ T Sbjct: 62 FT---NKAAREMRGRIEQLKGQSLHH-----MWIGTFHGLAHRLLRAHYAEANLPENFTI 113 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236 + + M + DE P ++ + + + ++ + Sbjct: 114 LDSDDQHRLIKRIIKSMNL--DE-KDWPAKQSQWYINGNKDEGLR--------PKDIDTY 162 Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 + ++ YQ ID D+D R +F V+ F Sbjct: 163 GDANQQKMRDIYQAYQQTCDRSGLIDFAELLLRAYELWRDNDRIRQHYQERFRAVLVDEF 222 Query: 297 IPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 N I+ A R +I+G D D++ + RG +E+I + Sbjct: 223 QDTNNIQYAWLRLLSAPSNNMMIVGDD------DQS-IYGWRGANVENISHFLKD 270 >gi|313632875|gb|EFR99821.1| helicase domain-containing protein [Listeria seeligeri FSL N1-067] Length = 444 Score = 40.7 bits (93), Expect = 0.39, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 35/152 (23%), Gaps = 11/152 (7%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +WQ E + + G GKT A L I P + + Sbjct: 12 EKWQEHGYETPTE-IQRAMYQPIKDGADVLAVSPTGTGKTVAYALPTLEKIEATPHIQWL 70 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 +A S + R W + L++ A + Q + K I Sbjct: 71 ILAPSHELVMQITE----------VIRSWLPSEDLTVISLIGGANVKRQIEKLKKKPQII 120 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + DE Sbjct: 121 VASPGRALELIKQKKIKMHEIKTITLDECDQL 152 >gi|289435058|ref|YP_003464930.1| helicase domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171302|emb|CBH27844.1| helicase domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 444 Score = 40.7 bits (93), Expect = 0.39, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 35/152 (23%), Gaps = 11/152 (7%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +WQ E + + G GKT A L I P + + Sbjct: 12 EKWQEHGYETPTE-IQRAMYQPIKDGADVLAVSPTGTGKTVAYALPTLEKIEATPHIQWL 70 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 +A S + R W + L++ A + Q + K I Sbjct: 71 ILAPSHELVMQITE----------VIRSWLPSEDLTVISLIGGANVKRQIEKLKKKPQII 120 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + DE Sbjct: 121 VASPGRALELIKQKKIKMHEIKTITLDECDQL 152 >gi|291531275|emb|CBK96860.1| DNA or RNA helicases of superfamily II [Eubacterium siraeum 70/3] Length = 1048 Score = 40.7 bits (93), Expect = 0.40, Method: Composition-based stats. Identities = 24/187 (12%), Positives = 57/187 (30%), Gaps = 30/187 (16%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGM 108 P+ +Q E ++ + + + I A G GKT ++A Sbjct: 317 PYSYQQEILDKL------DAERKVRGYNRNLIVAATGTGKTVISALDYKRFCRQNSDKPC 370 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 ++ +A+ E LK ++ ++ + E+ + +S Sbjct: 371 RLLFVAHREEILKQSM------------------YTFRAVLKDANFGEMFVGNYKPESID 412 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 + T + + + DE + + + NP+ +T+ Sbjct: 413 NLFISIQTFNSQSFTDKTSPDFY-DYIIVDEFHHAAAPTYQKL---LSYYNPHILLGLTA 468 Query: 229 NTRRLNG 235 R++G Sbjct: 469 TPERMDG 475 >gi|15922227|ref|NP_377896.1| hypothetical protein ST1912 [Sulfolobus tokodaii str. 7] gi|15623016|dbj|BAB67005.1| 725aa long conserved hypothetical protein [Sulfolobus tokodaii str. 7] Length = 725 Score = 40.7 bits (93), Expect = 0.40, Method: Composition-based stats. Identities = 20/163 (12%), Positives = 44/163 (26%), Gaps = 26/163 (15%) Query: 80 CAISAGRGIGKTTLNAWMM--LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 A++A RG GK+ + + + + R II + S + ++K L L Sbjct: 219 LAVTAPRGRGKSAVIGLFLSYVVFLKYREPTVIIITSPSYYSSSEI-FRFLAKGLKSLGI 277 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 ++ E++ + + + G + Sbjct: 278 KYTVTKSRDGKIMRISAGEVIVRWL--------------------APDLAKDYDGYLIVV 317 Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240 DEA+ +++ + N F Sbjct: 318 DEAAALG---IETLEYIIRKWNKTILITTIHGYEGSGKAFLKY 357 >gi|307249531|ref|ZP_07531518.1| RNA polymerase-associated protein rapA [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858386|gb|EFM90455.1| RNA polymerase-associated protein rapA [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 969 Score = 40.7 bits (93), Expect = 0.40, Method: Composition-based stats. Identities = 27/261 (10%), Positives = 65/261 (24%), Gaps = 19/261 (7%) Query: 33 MRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTI-FKCAISAGRGIGKT 91 + F P R ++ H + + ++ G+GKT Sbjct: 123 RFALRYRALQHQQAQFQSPLRGMRGIRASLIPHQLHIAKEVGQRVAPRVLLADEVGLGKT 182 Query: 92 TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151 ++ + + ++ + Q + W V F+ + + Sbjct: 183 IEAGMILQQQLFSGRVERVLVLVPESLQHQ---W-LVEMLRRFNLKFSLFDEERCADFDK 238 Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211 DS+ I + E P+ ++ + DEA Sbjct: 239 ADEDGNDVSENPFDSEALVIASIDWLESSPNRAKQVLASNWDMLIVDEAHHL---EWSEN 295 Query: 212 LGFF-------TELNPNRFWIMTSNTR--RLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262 ++T+ F + + + + Y ++ E D Sbjct: 296 EPSVGYQFVERLSKQTPAVLLLTATPEQLGQESHFARLALLDADRF--YDYNSFVAEQKD 353 Query: 263 SGFHEGIISRYGLDSDVARIE 283 ++ D ++ E Sbjct: 354 YKPVADAVATLLNDKPLSNEE 374 >gi|293356793|ref|XP_241671.5| PREDICTED: DNA replication helicase 2 homolog [Rattus norvegicus] Length = 1060 Score = 40.7 bits (93), Expect = 0.40, Method: Composition-based stats. Identities = 34/297 (11%), Positives = 72/297 (24%), Gaps = 18/297 (6%) Query: 28 FKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRG 87 F ++ P K ++ Q + M+ V + + G Sbjct: 603 FIAYLSSVLPHDAKDTVANILKGLNKPQRQAMKKV----------LLSKDYTLIVGMP-G 651 Query: 88 IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS--MLPHRHWFEMQS 145 GKTT ++ L + G S++ + + + + N L + L H Sbjct: 652 TGKTTTICALVRILSAC--GFSVLLTSYTHSAVDNILLKLAKFKIGFLRLGQSHKVHPDI 709 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 S+ + Y + + DEAS Sbjct: 710 QKFTEEEMCRLRSIASLAHLEELYNSHPVVATTCMGISHPMFSRKTFDFCIVDEASQISQ 769 Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265 I + F + + +KR + + V + + Sbjct: 770 PI--CLGPLFFSRRFVLVGDHKQLPPLVLNREARALGMSESLFKRLERNESAVVQLTIQY 827 Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGC 322 + ++ + N I +++ D P + G Sbjct: 828 RMNRKIMSLSNKLTYEGKLECG-SDRVANAVITLPNLKDVRLEFYADYSDNPWLAGV 883 >gi|293344978|ref|XP_002725876.1| PREDICTED: DNA replication helicase 2 homolog (yeast) [Rattus norvegicus] Length = 1060 Score = 40.7 bits (93), Expect = 0.40, Method: Composition-based stats. Identities = 34/297 (11%), Positives = 72/297 (24%), Gaps = 18/297 (6%) Query: 28 FKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRG 87 F ++ P K ++ Q + M+ V + + G Sbjct: 603 FIAYLSSVLPHDAKDTVANILKGLNKPQRQAMKKV----------LLSKDYTLIVGMP-G 651 Query: 88 IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS--MLPHRHWFEMQS 145 GKTT ++ L + G S++ + + + + N L + L H Sbjct: 652 TGKTTTICALVRILSAC--GFSVLLTSYTHSAVDNILLKLAKFKIGFLRLGQSHKVHPDI 709 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 S+ + Y + + DEAS Sbjct: 710 QKFTEEEMCRLRSIASLAHLEELYNSHPVVATTCMGISHPMFSRKTFDFCIVDEASQISQ 769 Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265 I + F + + +KR + + V + + Sbjct: 770 PI--CLGPLFFSRRFVLVGDHKQLPPLVLNREARALGMSESLFKRLERNESAVVQLTIQY 827 Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGC 322 + ++ + N I +++ D P + G Sbjct: 828 RMNRKIMSLSNKLTYEGKLECG-SDRVANAVITLPNLKDVRLEFYADYSDNPWLAGV 883 >gi|229551666|ref|ZP_04440391.1| possible bacteriophage terminase large subunit [Lactobacillus rhamnosus LMS2-1] gi|229314984|gb|EEN80957.1| possible bacteriophage terminase large subunit [Lactobacillus rhamnosus LMS2-1] Length = 563 Score = 40.7 bits (93), Expect = 0.40, Method: Composition-based stats. Identities = 35/292 (11%), Positives = 74/292 (25%), Gaps = 53/292 (18%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPG---MSIICIANSETQLKNTLWAEVSKWLSMLP 136 IS R GK+ L + ++L+ + A ++ + ++ V L L Sbjct: 93 VFISMARKNGKSLLISGVILYEFLFGKNPANKRQLYTAANDRKQAGIVFGMVKDRLRAL- 151 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 + D T DT Sbjct: 152 -------------MRKDPGIKRMVKITRDELVNLDDGSTIRSFSRDTG-LVDGYEPHVAV 197 Query: 197 NDEAS--GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL--------- 245 DE + T D+I G + F I T+ F + Sbjct: 198 VDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPMFQQNYPYAKKVLSGEETA 257 Query: 246 EDWKRYQIDTRTVEGIDSG--FHEGI---------------------ISRYGLDSDVARI 282 E + + + V+ +D + + + + + Sbjct: 258 ERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDIVHDQITDYLTTKLSQAHADGSLNAKLV 317 Query: 283 EILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVV 334 + + Q ++++ + ++A E D +G D+ D + Sbjct: 318 KNFNIWRQATEDSYLDFDAWKDAELSEKPDIRGKRAWIGIDVGRT-SDLFAI 368 >gi|254284073|ref|ZP_04959041.1| RNA helicase DbpA [gamma proteobacterium NOR51-B] gi|219680276|gb|EED36625.1| RNA helicase DbpA [gamma proteobacterium NOR51-B] Length = 474 Score = 40.7 bits (93), Expect = 0.40, Method: Composition-based stats. Identities = 25/200 (12%), Positives = 55/200 (27%), Gaps = 17/200 (8%) Query: 55 QLEFMEAVD----VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS-TRPGMS 109 QL+ ++A+ + + + A G GKT A +L I+ G+ Sbjct: 28 QLDALDALGYKAMTPVQAQSLPLILSGRDVIVRAKTGSGKTAAFALGLLATINPRFFGVQ 87 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 + + +L + + E+ + S +P+ L Q + + Sbjct: 88 AFVMCPT-RELADQVGKEIRRLASRMPNIKLV--------LLCGGVPLGPQRDSLSHGAH 138 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE---LNPNRFWIM 226 + E + + DEA D+ + + Sbjct: 139 IVVGTPGRIEDHLKRGSLNIESVKTLVLDEADRMLDMGFADAIKQIISGMPGDRQTLLFS 198 Query: 227 TSNTRRLNGWFYDIFNIPLE 246 + + + I P Sbjct: 199 ATYPQDIQRISRSIQRNPAS 218 >gi|149043918|gb|EDL97369.1| rCG60675 [Rattus norvegicus] Length = 991 Score = 40.7 bits (93), Expect = 0.40, Method: Composition-based stats. Identities = 34/297 (11%), Positives = 72/297 (24%), Gaps = 18/297 (6%) Query: 28 FKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRG 87 F ++ P K ++ Q + M+ V + + G Sbjct: 538 FIAYLSSVLPHDAKDTVANILKGLNKPQRQAMKKV----------LLSKDYTLIVGMP-G 586 Query: 88 IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS--MLPHRHWFEMQS 145 GKTT ++ L + G S++ + + + + N L + L H Sbjct: 587 TGKTTTICALVRILSAC--GFSVLLTSYTHSAVDNILLKLAKFKIGFLRLGQSHKVHPDI 644 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 S+ + Y + + DEAS Sbjct: 645 QKFTEEEMCRLRSIASLAHLEELYNSHPVVATTCMGISHPMFSRKTFDFCIVDEASQISQ 704 Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265 I + F + + +KR + + V + + Sbjct: 705 PI--CLGPLFFSRRFVLVGDHKQLPPLVLNREARALGMSESLFKRLERNESAVVQLTIQY 762 Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGC 322 + ++ + N I +++ D P + G Sbjct: 763 RMNRKIMSLSNKLTYEGKLECG-SDRVANAVITLPNLKDVRLEFYADYSDNPWLAGV 818 >gi|317126196|ref|YP_004100308.1| TrwC relaxase [Intrasporangium calvum DSM 43043] gi|315590284|gb|ADU49581.1| TrwC relaxase [Intrasporangium calvum DSM 43043] Length = 1096 Score = 40.7 bits (93), Expect = 0.40, Method: Composition-based stats. Identities = 31/244 (12%), Positives = 59/244 (24%), Gaps = 20/244 (8%) Query: 87 GIGKTTLNAWM-MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 G GK+T A + +W PG + ++ + + + Sbjct: 544 GTGKSTTMAGVRAVWEAKFGPGSVVGLAPSAAAAEVLADAVGMPTENTAKWLTEHARLPE 603 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 A L S + ++ R G V DEAS Sbjct: 604 RQARLERLRARLDRASPSLRTRALEREARRT----AHEIDRWRLRPGQLVIIDEASMVGT 659 Query: 206 IINKSILGFFTELNPNRF----WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI 261 + I + W S G + + +D + V Sbjct: 660 LELDQITTSASAAAAKVLLVGDWAQLS--PVQAGGAFKLLATDRDDVPQLH----DVRRF 713 Query: 262 DSGFHEGI--ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI 319 + R G + E G+ + + + + A + L+ Sbjct: 714 RHEWERDASLKLRTGRPTAADDYEKHGRVIGGDRDTV--LDALFTAWQTDIT-AGRTSLM 770 Query: 320 MGCD 323 + D Sbjct: 771 IAAD 774 >gi|295399200|ref|ZP_06809182.1| DEAD/DEAH box helicase domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|312110198|ref|YP_003988514.1| DEAD/DEAH box helicase [Geobacillus sp. Y4.1MC1] gi|294978666|gb|EFG54262.1| DEAD/DEAH box helicase domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|311215299|gb|ADP73903.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y4.1MC1] Length = 435 Score = 40.7 bits (93), Expect = 0.40, Method: Composition-based stats. Identities = 27/223 (12%), Positives = 55/223 (24%), Gaps = 29/223 (13%) Query: 31 FVMRFF-PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI-SAGRGI 88 F F P+ I+ F +P Q + K AI + G Sbjct: 6 FERFSFQPFIIEAIKELRFYKPTEIQERII-------------PIALRGKSAIGQSQTGT 52 Query: 89 GKTTLNAWMMLWLISTRPGMS---IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 GKT A+++ + P + A + + E+ K P Sbjct: 53 GKTH--AYLLPIIEKIDPDRKAVQAVITAPTRELATQI-YHEILKITKFCPSDRQITA-- 107 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 + + + ++ + + + DEA D Sbjct: 108 ---RCFIGGTDKQKAIEKLKTQPHIVVGTPGRINDLIREQALLVRTANTLVVDEADLMLD 164 Query: 206 IINKSILGFFTELNPNRFWIMTSN---TRRLNGWFYDIFNIPL 245 + + P ++ + +L + P Sbjct: 165 MGFIVDVDQIAARMPKELQMLVFSATIPEKLKPFLKKYMENPE 207 >gi|195495021|ref|XP_002095090.1| GE22191 [Drosophila yakuba] gi|194181191|gb|EDW94802.1| GE22191 [Drosophila yakuba] Length = 681 Score = 40.7 bits (93), Expect = 0.40, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 39/153 (25%), Gaps = 4/153 (2%) Query: 60 EAVDVHCHSNVNNSNPTIFK-CAISAGRGIGKTTLNAWMMLWLISTRPGMSI--ICIANS 116 + V P + +SA G GKT A ++ L+S R + + + Sbjct: 165 KQVIPWILEAQAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVECKVRALIVLPV 224 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 + VS S + L + +T Sbjct: 225 AELALQV-YRVVSALCSKTELEVCLLSKQHKLEDEQEKLVEQYKGKYYSKADIVVTTPGR 283 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209 E G + DEA D + + Sbjct: 284 LVEHLHATKGFCLKSLTFLVIDEADRIMDAVFQ 316 >gi|322493294|emb|CBZ28579.1| putative mitochondrial DEAD box protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 544 Score = 40.7 bits (93), Expect = 0.41, Method: Composition-based stats. Identities = 24/177 (13%), Positives = 46/177 (25%), Gaps = 20/177 (11%) Query: 43 KPLEHFSQPH---RWQLEFMEAV----DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95 PL F + RW E ++ + A G GKT A Sbjct: 89 TPLNSFEELRDAPRWLAEGLKTLKYPSTTDIQKFTIPLLADGHDVIGLAPTGSGKTVAFA 148 Query: 96 WMMLWLISTRPGMS--IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153 L P + ++ +A + ++ T K L ++ Sbjct: 149 VPALAGFKPNPDGTPSVLVLAPTRELVQQTT-----KVFQNLGCGQVRVCEA------YG 197 Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS 210 A Q+ + + + + + + DEA D+ + Sbjct: 198 GASRDLQARRLRNGCDALVACPGRLKDFLDGGDVSIRNLSFLVFDEADRLLDMGFQV 254 >gi|269104692|ref|ZP_06157388.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae CIP 102761] gi|268161332|gb|EEZ39829.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae CIP 102761] Length = 430 Score = 40.7 bits (93), Expect = 0.41, Method: Composition-based stats. Identities = 18/185 (9%), Positives = 50/185 (27%), Gaps = 20/185 (10%) Query: 57 EFMEAV-DVHCHSNVNNSNPTIFK---CAISAGRGIGKTTLNAWMMLWLISTRP------ 106 + + + + P + + +A G GKT + ++ + P Sbjct: 14 KALTEIGYEKLTPIQKQAIPQLRRGHDVLANAQTGTGKTAAFSLPIIQKMLDNPQPRSRM 73 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 + + +A + ++ + + L+ ++ Q ++S Sbjct: 74 NVRALILAPTRELVEQI----------ANNIKDYTRYTDLTTVAVFGGRKIATQEKKLES 123 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226 + ++ + DEA D+ S + + IM Sbjct: 124 GCDILVATPGRLLEHLELQNVLLSNIEFLVFDEADRMLDMGFISAIRTILSNVNSTPQIM 183 Query: 227 TSNTR 231 + Sbjct: 184 LFSAT 188 >gi|156838354|ref|XP_001642884.1| hypothetical protein Kpol_1007p10 [Vanderwaltozyma polyspora DSM 70294] gi|156113461|gb|EDO15026.1| hypothetical protein Kpol_1007p10 [Vanderwaltozyma polyspora DSM 70294] Length = 605 Score = 40.7 bits (93), Expect = 0.41, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 51/173 (29%), Gaps = 21/173 (12%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR- 105 +F P Q ++ C N +++N + A G GKT +L + Sbjct: 202 NFISPSPIQR---ISIPNICQKNGHSTNRDLMGI---ASTGSGKTLAFVIPILIKLLGTA 255 Query: 106 ---------PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156 G + +A + + AE+ K LS+ + E+ ++ Sbjct: 256 IRPLSLKVIEGPKALILAPTRELAQQI-QAEIKKILSLSSN----ELTKITSICIVGGHS 310 Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209 + E S + + + + DEA D + Sbjct: 311 IEEISYDLSKGCDILVATPGRLIDCLESHLIVIDNVNTIVLDEADKMIDFGFE 363 >gi|313813466|gb|EFS51180.1| protein, SNF2 family [Propionibacterium acnes HL025PA1] Length = 458 Score = 40.7 bits (93), Expect = 0.41, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 56/192 (29%), Gaps = 28/192 (14%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG--M 108 PH +Q + H + AI G G+GK+ + +W + Sbjct: 5 PHNYQQTATRFILDHHEA------------AILLGMGLGKSVIT-LTAIWQLLLDYFTVS 51 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 ++ +A ++T A+V+KW + + + + + + ++ Sbjct: 52 RVLVVAP-LRVARDTWPAQVAKWDHLQGLSVAVAVGTKADRLDALAKSAMVTVINRENIP 110 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 + + S V DE S + K + W+ + Sbjct: 111 WLVRQYGDS------------WPFDMVVIDELSSFKNHRAKRFTALVKMRPHVKRWVGLT 158 Query: 229 NTRRLNGWFYDI 240 T NG Sbjct: 159 GTPASNGLMDIW 170 >gi|295114516|emb|CBL33153.1| Uncharacterized protein conserved in bacteria [Enterococcus sp. 7L76] Length = 906 Score = 40.7 bits (93), Expect = 0.41, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 46/161 (28%), Gaps = 16/161 (9%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q E + + +F A G GKT L A ++L+L + + Sbjct: 49 RYYQDEAIRNYHYTQTRIKPSPQHVLFNMA----TGSGKTDLMAGLILYLYQEYDYKNFL 104 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 N+ + L ++ ++ F+ + E+ I Sbjct: 105 FTVNTNS----VLMKTKDNLVNQNSDKYLFQDKIEIDGKQISVVEVERFPRVQQDNTIYI 160 Query: 172 TCRTYSEERPDTFVGPHN--------THGMAVFNDEASGTP 204 + + D V N H + + DEA Sbjct: 161 KLSSVQKVSDDLCVVKENTMGLADYERHPVVILADEAHHYS 201 >gi|194303202|ref|YP_002014616.1| gp5 [Mycobacterium phage Phaedrus] gi|194150934|gb|ACF33969.1| gp5 [Mycobacterium phage Phaedrus] Length = 586 Score = 40.7 bits (93), Expect = 0.41, Method: Composition-based stats. Identities = 41/351 (11%), Positives = 76/351 (21%), Gaps = 48/351 (13%) Query: 43 KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102 L P + + + ++ GK+T+ A Sbjct: 79 AELATAVDPEFVITPALRIISDAIEDVLRYP---RCNLLVTMPPQEGKSTMCAVWTPIRA 135 Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162 I +A L + + + L++ + Sbjct: 136 LQLNPNRRIILATYGDSLADQHSTTARDLIMRYGTGVTDALTGLAVEDKLGLKINPK--- 192 Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND-------EASGT--PDIINKSILG 213 + I D EA + +N+ Sbjct: 193 QAKVSSWRIDGAIGGMVAAGLGSAITGKSADLFIIDDPFKNMIEADSARHREKVNEWFAS 252 Query: 214 FFTEL-NPNRFWIMTSNTRRLNGWFYDIFNIPL-EDWKRYQIDTRTVEGIDSGFHEGIIS 271 + +P I+ I D + V + + Sbjct: 253 VASTRLSPEASMILIQTRWHPEDLSGTIIAGEKLLDAEDRTWRHINVPAVSEDGIPDALG 312 Query: 272 RYGLDSDV--ARIEILGQF-------------------PQQEVNNFIPHNYIEEAMSREA 310 R + AR L +F P+ + E R Sbjct: 313 RPEPGIPMISARGRTLREFNQTRKSVGERVWYALYQGSPRNPAGGLFMRAWFEPMAER-- 370 Query: 311 IDDLYAPLIMGCDIAGEG-GDKTVVV----FRRGNIIEHIFDWSAKLIQET 356 + I+ D A G GD+T ++ R G I+ DWS + Sbjct: 371 SPERPLATIVAIDPADSGEGDETGIIGGMLDRDGTIVLT-DDWS--DQMTS 418 >gi|194208328|ref|XP_001497607.2| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like [Equus caballus] Length = 1656 Score = 40.7 bits (93), Expect = 0.41, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 34/99 (34%), Gaps = 12/99 (12%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P WQ E ++ VD + + I A GKT + + M ++ + Sbjct: 761 PDTWQREVLDVVDNNESA------------VIVAPTSSGKTYASYYCMEKVLKESDEGVV 808 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLH 149 + +A ++ + ++++ LP + Sbjct: 809 VYVAPTKVLVGQVAATVQNRFIKKLPPGSALCGTFTRDY 847 >gi|187940200|gb|ACD39328.1| ATP-dependent DNA helicase [Pseudomonas aeruginosa] Length = 1708 Score = 40.7 bits (93), Expect = 0.41, Method: Composition-based stats. Identities = 39/347 (11%), Positives = 81/347 (23%), Gaps = 52/347 (14%) Query: 12 EQELHEMLMHAECVLSFKN-FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHC---H 67 E+ + + K+ F+ R+F + L E A+ + Sbjct: 1049 EEMAAALRLVMHYFNDPKDEFIERYFAGREEVLKLATS-------EESWRAIVENLSVAQ 1101 Query: 68 SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLW 125 + N + + AG G GKT + + +L+ R P I+ + + Sbjct: 1102 RVIVEDNEDQNRL-VLAGPGSGKTRVIVHRIAYLLRVRRVPARCIVALTFNRHAANEIKQ 1160 Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR--TYSEERPDT 183 + + + +++ +G E E + + + Sbjct: 1161 RLLRLVGADAYGVNVMTYHRMAMRLTGTRFERGETVEEGRLSLVLSDAVELLEGKRQVEG 1220 Query: 184 FVGPH---NTHGMAVFNDEASGTPDIINKSILGFF---TELNPNRFWIMTSNTRRLN--- 234 + DE D+ + I E + + + Sbjct: 1221 EDDLREQLLRGYRYILVDEYQDIDDVQYRLISALAGRKAEEEGRLCILAVGDDDQNIYAW 1280 Query: 235 -GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEV 293 ED+ E + + Q P + Sbjct: 1281 RDTSNRFIEQFREDYSASSSYLVDNYRSSRNIIEAANQVIERNP----HRLKSQHPIK-- 1334 Query: 294 NNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEG--------GDKT 332 I E + D A G GD++ Sbjct: 1335 ---IDVKRTESPRGGLWEEK---------DPARRGQVLRLLIAGDES 1369 >gi|3703076|gb|AAC63033.1| putative terminase large subunit [Lactococcus phage P008] Length = 540 Score = 40.7 bits (93), Expect = 0.41, Method: Composition-based stats. Identities = 29/209 (13%), Positives = 65/209 (31%), Gaps = 22/209 (10%) Query: 85 GRGIGKTTLNA-WMMLWLIS-TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 GRG GK++L A ++ W+I + G + IA TQ ++ Sbjct: 101 GRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVF---------------DQV 145 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 + + + +T +++ D + + DE Sbjct: 146 RNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTFKKQTDDTLRAQGGNSSLNIFDEVHT 205 Query: 203 TPDIINKSIL-GFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI 261 + I +S+ G + + + +TS + +G + + E +K + Sbjct: 206 YGEDITESVNKGSRQKQDNWQSICITSGGLKRDGLYDKLV----ERFKSEEEFYNDRSFG 261 Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQ 290 E + + ++G P+ Sbjct: 262 LLYMLENHEQVKDKKNWTMALPLIGDVPK 290 >gi|67484208|ref|XP_657324.1| U5 snRNP-specific 200kd protein [Entamoeba histolytica HM-1:IMSS] gi|56474579|gb|EAL51944.1| U5 snRNP-specific 200kd protein, putative [Entamoeba histolytica HM-1:IMSS] Length = 1799 Score = 40.7 bits (93), Expect = 0.41, Method: Composition-based stats. Identities = 25/173 (14%), Positives = 52/173 (30%), Gaps = 14/173 (8%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIF----KCAISAGRGIGKTTLNAWMMLWLI----ST 104 W + + + + + + PT+F + A G GKTT+ +L + T Sbjct: 439 EWAQKSLMPL-KYLNRMQSTIYPTVFETDDNVLVCAPTGAGKTTVALLTILHEVKKAKQT 497 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 II IA ++ ++ + K ++ ++ +S S EL E + + Sbjct: 498 HEQFKIIYIAPMKSLVQEIVGTLQGKLENL-----GMKVAEMSGDSSLTKKELEETDVIV 552 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217 + + + DE D + Sbjct: 553 ATPEKIDVITRKIGGLGSGCGHGIFEYLKVMIIDEVHLLHDTRGPVLEALVAR 605 >gi|259489484|tpe|CBF89793.1| TPA: DNA helicase (Eurofung) [Aspergillus nidulans FGSC A4] Length = 971 Score = 40.7 bits (93), Expect = 0.41, Method: Composition-based stats. Identities = 21/158 (13%), Positives = 53/158 (33%), Gaps = 12/158 (7%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + ++ G+GKT + A +ML + II +A ++ + + A + ++ +P Sbjct: 174 YNLLVALPTGLGKTFIAATIMLNWLRWTKSAQIIFVAPTKPLVAQQISACLR--IAGIPR 231 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + + + + + +T +T + + P + + Sbjct: 232 SQTTMLTGEAP-------PGIRAEEWKSKRVFFMTPQTLTNDLKSGIADP--KRIVLLVV 282 Query: 198 DEASGTPDIINKS-ILGFFTELNPNRFWIMTSNTRRLN 234 DEA ++ F N + + + T Sbjct: 283 DEAHRATGGYAYVEVVKFLRRFNQSFRVLALTATPGST 320 >gi|158337176|ref|YP_001518351.1| DEAD/DEAH box-like helicase [Acaryochloris marina MBIC11017] gi|158307417|gb|ABW29034.1| DEAD/DEAH box-like helicase [Acaryochloris marina MBIC11017] Length = 909 Score = 40.7 bits (93), Expect = 0.41, Method: Composition-based stats. Identities = 40/323 (12%), Positives = 88/323 (27%), Gaps = 40/323 (12%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 +Q F +D +N + +SA G GKT + ++ G + Sbjct: 7 EFQQLFPYQLDEFQQQAINALDANQ-SVVVSAPTGSGKT-MVGEYAIYRALQH-GQRVFY 63 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 + L + ++ P + +++ + + Sbjct: 64 TTPLKALSNQKLRDFQHMFGDQAVGLLTGDLSVNRSAPILVMTTEIFRNILYGTLTDVVN 123 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI-----INKSILGFFTELNPNRFWIMT 227 +V DE D +SI+ ++ Sbjct: 124 TSL--------------EGVTSVILDECHYMNDRQRGTVWEESIIYCPADIQLIALSATV 169 Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE------GIDSGFHEGIISRYGLDSDVAR 281 +N ++L W + + D R V F L+ + Sbjct: 170 ANAQQLVDWMSWVHGPTQ----LIESDWRPVPLAYFFANAKGLFPLLNQKHTALNPRLKA 225 Query: 282 I--EILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRG 339 + G Q+ ++ ++ RE + A + + +G D+TV Sbjct: 226 QAKKHHGHRHQRRADSPDVIAVLQHLREREMLP---AIYFI---FSRKGCDRTVESTAHL 279 Query: 340 NIIEHIFDWSAKLIQETNQEGCP 362 N++ ++ ET ++ P Sbjct: 280 NLLTPAESAQMQIQIETFRQQHP 302 >gi|121714731|ref|XP_001274976.1| RNA helicase/RNAse III, putative [Aspergillus clavatus NRRL 1] gi|158706439|sp|A1C9M6|DCL2_ASPCL RecName: Full=Dicer-like protein 2; Includes: RecName: Full=Endoribonuclease dcl2; Includes: RecName: Full=ATP-dependent helicase dcl2 gi|119403130|gb|EAW13550.1| RNA helicase/RNAse III, putative [Aspergillus clavatus NRRL 1] Length = 1389 Score = 40.7 bits (93), Expect = 0.41, Method: Composition-based stats. Identities = 28/264 (10%), Positives = 66/264 (25%), Gaps = 28/264 (10%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +QLE +EA ++ G GKT + + + + P II Sbjct: 17 RNYQLEMLEA-------------SMKENIIVAMDTGSGKTHIAVLRIKAELDSCPPDKII 63 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 L ++ L + R + + L + + + + + Y + Sbjct: 64 WFLAPTVALCTQQHKVIASNLPAVQTRTLTGLDKVELWTEQAIWDAILKDVRVVVSTYAV 123 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII------NKSILGFFTELNP---NR 222 S + + DEA ++ P R Sbjct: 124 LADALSHG------FMRMSRLALIIFDEAHHCMRKHAANKIMQDFYHPTVSKFGPSAVPR 177 Query: 223 FWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI 282 +T++ + D E + + D + Sbjct: 178 IMGLTASPVVRSNREELFTIETNLDAVCKTPRAHRQELLKFSHRPELKQLLYEPPDPMGL 237 Query: 283 EILGQFPQQEVNNFIPHNYIEEAM 306 ++ Q + + + + ++ Sbjct: 238 QVSSQTLRALIEAWETLDIEDDPY 261 >gi|313763503|gb|EFS34867.1| type III restriction enzyme, res subunit [Propionibacterium acnes HL013PA1] gi|313793892|gb|EFS41916.1| type III restriction enzyme, res subunit [Propionibacterium acnes HL110PA1] gi|313801283|gb|EFS42534.1| type III restriction enzyme, res subunit [Propionibacterium acnes HL110PA2] gi|313816685|gb|EFS54399.1| type III restriction enzyme, res subunit [Propionibacterium acnes HL059PA1] gi|313829488|gb|EFS67202.1| type III restriction enzyme, res subunit [Propionibacterium acnes HL063PA2] gi|313839994|gb|EFS77708.1| type III restriction enzyme, res subunit [Propionibacterium acnes HL086PA1] gi|314914801|gb|EFS78632.1| type III restriction enzyme, res subunit [Propionibacterium acnes HL005PA4] gi|314919382|gb|EFS83213.1| type III restriction enzyme, res subunit [Propionibacterium acnes HL050PA1] gi|314920710|gb|EFS84541.1| type III restriction enzyme, res subunit [Propionibacterium acnes HL050PA3] gi|314930590|gb|EFS94421.1| type III restriction enzyme, res subunit [Propionibacterium acnes HL067PA1] gi|314954455|gb|EFS98861.1| type III restriction enzyme, res subunit [Propionibacterium acnes HL027PA1] gi|314957554|gb|EFT01657.1| type III restriction enzyme, res subunit [Propionibacterium acnes HL002PA1] gi|314963753|gb|EFT07853.1| type III restriction enzyme, res subunit [Propionibacterium acnes HL082PA1] gi|314968419|gb|EFT12517.1| type III restriction enzyme, res subunit [Propionibacterium acnes HL037PA1] gi|315079601|gb|EFT51594.1| type III restriction enzyme, res subunit [Propionibacterium acnes HL053PA2] gi|315099131|gb|EFT71107.1| type III restriction enzyme, res subunit [Propionibacterium acnes HL059PA2] gi|315100386|gb|EFT72362.1| type III restriction enzyme, res subunit [Propionibacterium acnes HL046PA1] gi|315109108|gb|EFT81084.1| type III restriction enzyme, res subunit [Propionibacterium acnes HL030PA2] gi|327452081|gb|EGE98735.1| type III restriction enzyme, res subunit [Propionibacterium acnes HL092PA1] gi|327454882|gb|EGF01537.1| type III restriction enzyme, res subunit [Propionibacterium acnes HL087PA3] gi|327457834|gb|EGF04489.1| type III restriction enzyme, res subunit [Propionibacterium acnes HL083PA2] gi|328755286|gb|EGF68902.1| type III restriction enzyme, res subunit [Propionibacterium acnes HL087PA1] gi|328758233|gb|EGF71849.1| type III restriction enzyme, res subunit [Propionibacterium acnes HL025PA2] Length = 303 Score = 40.7 bits (93), Expect = 0.42, Method: Composition-based stats. Identities = 22/165 (13%), Positives = 46/165 (27%), Gaps = 13/165 (7%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE--TQLKNTLWAEVSK 130 + ++ G+GKT ++ LI G I+ + Q++N +W+ + Sbjct: 120 PENLRPRILLADAVGLGKTIEIGMILSELIRRGRGERILIVCPRHVLEQMQNEMWSRFAI 179 Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190 L ++ ++ + +D+ H Sbjct: 180 PFVRLDSVGLQRVKQKIPANRNPFSWYKRVIISMDTLKQDRFT-----------HDLHRH 228 Query: 191 HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 AV DE+ ++ T I+ S T Sbjct: 229 EWNAVVIDESHNVTGDTTQNNRLTRTLAPNTDALILASATPHNGN 273 >gi|171060955|ref|YP_001793304.1| type III restriction protein res subunit [Leptothrix cholodnii SP-6] gi|170778400|gb|ACB36539.1| type III restriction protein res subunit [Leptothrix cholodnii SP-6] Length = 1058 Score = 40.7 bits (93), Expect = 0.42, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 60/206 (29%), Gaps = 31/206 (15%) Query: 33 MRFFPWGIKGKPLEHFS-QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT 91 F G + F QP +Q E +E + S+ ++A G GKT Sbjct: 312 RESFGGGEPTATISFFDLQPKTYQQEMLEQL------ITERSHGRNRNLLVAA-TGTGKT 364 Query: 92 TLNAWMMLWLISTRPGM-SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150 + A+ G ++ +A+ E L+ L + +L + ++ + P Sbjct: 365 VVAAFDYRNTCRVEGGRPRLLFVAHREEILRQAL----RTYREVLRDPEFGDLLTGGNQP 420 Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS 210 W + S D H V DE + Sbjct: 421 ERWDH---------------LFATIDSVTSRDLVTTVGADHWHTVVVDECHRLAADRFDA 465 Query: 211 ILGFFTELNPNRFWIMTSNTRRLNGW 236 + P+ +T+ R +G Sbjct: 466 FVKSVR---PSVLLGLTATPERSDGQ 488 >gi|170030072|ref|XP_001842914.1| potentail helicase MOV-10 [Culex quinquefasciatus] gi|167865920|gb|EDS29303.1| potentail helicase MOV-10 [Culex quinquefasciatus] Length = 989 Score = 40.7 bits (93), Expect = 0.42, Method: Composition-based stats. Identities = 28/212 (13%), Positives = 51/212 (24%), Gaps = 19/212 (8%) Query: 34 RFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCH--SNVNNSNPTIFKCAISAGRGIGKT 91 FFP K LE+ + W +E N+ N + G GKT Sbjct: 503 LFFP-EEAPKQLENAKEIDSWFNPSLEGNVEQQTAVRNIVNRTAYPLPYILFGPPGTGKT 561 Query: 92 TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE--------VSKWLSMLPHR---HW 140 T ++ + + P I+ A S + ++ S + Sbjct: 562 TTLVEAIVQICTRHPSEHILVTAQSNAACDELAVRLLHYLAPKSIYRFYSRSIEKRLEEL 621 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 E + + ++ + H H VF DE Sbjct: 622 PEPLKQISNLADGVFLWPPWETLYKTRVIVCSLTVCGRLVQGNMKPNHFRH---VFVDEC 678 Query: 201 SGTPDIINKSILGFFTELNPNRF--WIMTSNT 230 + L ++ + Sbjct: 679 GSASEPATLVALAGLVSKRRKIPASVVLAGDP 710 >gi|160895971|ref|YP_001561553.1| exodeoxyribonuclease V subunit alpha [Delftia acidovorans SPH-1] gi|160361555|gb|ABX33168.1| exodeoxyribonuclease V, alpha subunit [Delftia acidovorans SPH-1] Length = 735 Score = 40.7 bits (93), Expect = 0.42, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 49/188 (26%), Gaps = 23/188 (12%) Query: 38 WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI-SAGRGIGKTTLNAW 96 W + P P WQ + + + ++ + G G GKT A Sbjct: 220 WLDRLFPPAAGGGPVDWQK-------------LACALALRGRLSVITGGPGTGKTYTAAR 266 Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156 ++ L +T P QL+ L A K + L + L G Sbjct: 267 LLALLFATAPDA---------GQLRVALAAPTGKAAARLKQSIDGALLQLQGSMGGEIDL 317 Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT 216 ++ + R F + DEAS + ++L Sbjct: 318 AGLVQRMGAARTLHSMLGARPDTRHWGFHAGRQLDVDVLIVDEASMVHLEMMAALLEALP 377 Query: 217 ELNPNRFW 224 Sbjct: 378 AGARLVLL 385 >gi|262396801|ref|YP_003288654.1| ATP-dependent RNA helicase [Vibrio sp. Ex25] gi|269966728|ref|ZP_06180805.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 40B] gi|262340395|gb|ACY54189.1| ATP-dependent RNA helicase [Vibrio sp. Ex25] gi|269828651|gb|EEZ82908.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 40B] Length = 430 Score = 40.7 bits (93), Expect = 0.42, Method: Composition-based stats. Identities = 29/272 (10%), Positives = 78/272 (28%), Gaps = 38/272 (13%) Query: 87 GIGKTTLNAWMMLWLIST------RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 G GKT + M+ + R + +A + E+++ ++ + + Sbjct: 48 GTGKTAAFSLPMIQQLLDSNRSASRKTARALILAPT---------RELAEQIADNI-KAY 97 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + +LS+ ++ Q +++ + E H + DEA Sbjct: 98 TKYTNLSVAAIFGGRKMSSQVAALENGVDILVATPGRLEEHIEQGNVSVAHLEFLVFDEA 157 Query: 201 SGTPDIIN--KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 D+ + + ++ T + + + +T Sbjct: 158 DRILDMGFIHAVRKIMLDVDTDPQIMMFSATTSSQLNLLAKDILRKPKRIEVERANTTAQ 217 Query: 259 EGIDSGFHEGIISRYGLDSDV-----ARIEILGQFPQQEVNNFI-------------PHN 300 + + L S++ + ++ ++ N + + Sbjct: 218 TVAHVLYPVDQERKTELLSELIGRKNWKQVLVFVNYKETANEVVKELKLDGIKAVVCHGD 277 Query: 301 YIEEAMSREAID--DLYAPLIMGCDIAGEGGD 330 + A R + A +++ D+A G D Sbjct: 278 RAQSARRRALEEFKSGKARVMVATDVAARGLD 309 >gi|281416255|ref|YP_003347604.1| terminase large subunit [Enterococcus phage phiFL3A] gi|270209520|gb|ACZ64061.1| terminase large subunit [Enterococcus phage phiFL3A] Length = 239 Score = 40.3 bits (92), Expect = 0.42, Method: Composition-based stats. Identities = 20/201 (9%), Positives = 56/201 (27%), Gaps = 21/201 (10%) Query: 94 NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153 A +++ + R ++ + I + ++ +++ ++ + +F++ + Sbjct: 42 IAHIIV-QLIMRYPVNAVAIRYVDNTIELSIFEQIKWAIEEQGVSKYFKVNKSPMK---- 96 Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSIL 212 + + I R + + +E A + K+I Sbjct: 97 --------ITYKPRGNYIVFRGAQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTIT 148 Query: 213 GFFTEL----NPNRFWIMTSNTR-RLNGWFYDIFN--IPLEDWKRYQIDTRTVEGIDSGF 265 + + N R W + E+ + + I F Sbjct: 149 NSLLRGELADGLFYKFFYSYNPPKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAF 208 Query: 266 HEGIISRYGLDSDVARIEILG 286 E + + + A E G Sbjct: 209 IEEVNATRAKNPKRAEWEYDG 229 >gi|254581536|ref|XP_002496753.1| ZYRO0D07348p [Zygosaccharomyces rouxii] gi|238939645|emb|CAR27820.1| ZYRO0D07348p [Zygosaccharomyces rouxii] Length = 1960 Score = 40.3 bits (92), Expect = 0.42, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 35/125 (28%), Gaps = 14/125 (11%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTLWAEVSKWLSML-P 136 + + G GKT + A + +W PG I+ IA + ++ V W + P Sbjct: 1157 NVFVGSPTGSGKT-VIAELAMWHAFRDFPGKKIVYIAPMKALVRER----VDDWRKKITP 1211 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 ++ + + + R + R V Sbjct: 1212 VTGDRVVELTGDSLPDPRDVRDSTIVITTPEKFDGISRNWQTRRFV-------QDVSLVI 1264 Query: 197 NDEAS 201 DE Sbjct: 1265 MDEIH 1269 >gi|210621168|ref|ZP_03292510.1| hypothetical protein CLOHIR_00453 [Clostridium hiranonis DSM 13275] gi|210154905|gb|EEA85911.1| hypothetical protein CLOHIR_00453 [Clostridium hiranonis DSM 13275] Length = 1064 Score = 40.3 bits (92), Expect = 0.42, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 58/187 (31%), Gaps = 30/187 (16%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG--M 108 P+ +Q E ++ + + +K + A G GKT ++A P Sbjct: 332 PYSYQQEILDKL------DAERKVRGHYKNLVVAATGTGKTVISALDYKRFRKENPDKPC 385 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 ++ +A+ E LK +++ L F + + Sbjct: 386 RLLFVAHREEILKQSMYT-FRAVLKDANFGDMFVGNYKPDSLDNLFISI----------- 433 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 T + + E+ F + DE +S+ T PN +T+ Sbjct: 434 QTFNSQKFIEKTDKDF-------YDYIIVDEFHHAAAPTYQSL---LTYYEPNILLGLTA 483 Query: 229 NTRRLNG 235 R++G Sbjct: 484 TPERMDG 490 >gi|51850387|dbj|BAD42421.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.42, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|296426050|ref|XP_002842549.1| hypothetical protein [Tuber melanosporum Mel28] gi|295638821|emb|CAZ80284.1| unnamed protein product [Tuber melanosporum] Length = 1003 Score = 40.3 bits (92), Expect = 0.42, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 36/118 (30%), Gaps = 3/118 (2%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTT A ++ G S++ + + T + N L + + L ++ Sbjct: 551 GTGKTTTIAHII--RALVGQGKSVLLTSYTHTAVDNILLKIKNDNIDTLRLGSGTKIHP- 607 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + AE + S + + + + DEAS Sbjct: 608 EVKSFAQLAEGQKTSFEELRETFHMPKIVATTCLGVNHPIFSERKFDYCIVDEASQIT 665 >gi|290891687|ref|ZP_06554735.1| hypothetical protein AWRIB429_2125 [Oenococcus oeni AWRIB429] gi|290478671|gb|EFD87347.1| hypothetical protein AWRIB429_2125 [Oenococcus oeni AWRIB429] Length = 540 Score = 40.3 bits (92), Expect = 0.42, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 52/188 (27%), Gaps = 25/188 (13%) Query: 50 QPHRWQLEFM--EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA-WMMLWLIS-TR 105 P RW E M + VN N GRG GK++L A ++ W+I + Sbjct: 68 PPQRWWYELMLGYDMVDEKGIQVNLVNEIFLNL----GRGSGKSSLMATRVLNWMILGGQ 123 Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 G + IA TQ ++ + + Sbjct: 124 YGGESLVIAYDNTQARHVF---------------DQVRNQTEASDTLRVYNENKIFKSTK 168 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225 + +T +++ + + + DE + I +S+ W Sbjct: 169 QGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKG--SRQKQDNWQ 226 Query: 226 MTSNTRRL 233 T Sbjct: 227 SIYITSGG 234 >gi|288916279|ref|ZP_06410658.1| Terminase [Frankia sp. EUN1f] gi|288352258|gb|EFC86456.1| Terminase [Frankia sp. EUN1f] Length = 546 Score = 40.3 bits (92), Expect = 0.42, Method: Composition-based stats. Identities = 25/197 (12%), Positives = 58/197 (29%), Gaps = 22/197 (11%) Query: 52 HRWQL-EFMEAVDVHCHSNVNNSNPTI-FKCA-ISAGRGIGKTTLNAWMMLWLISTR-PG 107 WQ E + + + ++ A I GR GK+ L + + L+ + Sbjct: 45 EPWQRDEIIRPMFGTVMYDPQLEQWVRQYRLAWIELGRKNGKSELLSALALYFLCADGEE 104 Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 + + A + ++ + + + P S L + ID K Sbjct: 105 SAEVYGAACDRDQAALVYNVAKRMVELSPV------------LSKRLEVLDSKKRIIDPK 152 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIM 226 ++ ++ + PH + DE P+ + ++ + Sbjct: 153 TNSVYQVLAADAGGNLGQNPHA-----IVFDEVLTQPNRELWDALRTGMGARSQPIMIAA 207 Query: 227 TSNTRRLNGWFYDIFNI 243 T+ N + + Sbjct: 208 TTAGNTGNDFCLEEHEY 224 >gi|212539558|ref|XP_002149934.1| DEAD box helicase Mph1, putative [Penicillium marneffei ATCC 18224] gi|210067233|gb|EEA21325.1| DEAD box helicase Mph1, putative [Penicillium marneffei ATCC 18224] Length = 1129 Score = 40.3 bits (92), Expect = 0.43, Method: Composition-based stats. Identities = 22/158 (13%), Positives = 48/158 (30%), Gaps = 12/158 (7%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + ++ G+GKT + A +ML I+ A ++ VS+ ++ Sbjct: 310 YNLLVALPTGLGKTFIAATVMLNWFRWTKDAQIVFTAPTK--------PLVSQQVAACLG 361 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 +L +G + + +T +T + P + + Sbjct: 362 IAGIPRSDTTL-LTGNVPPGTRAEEWQTKRVFFMTPQTLINDLKTGIADP--KRIVLLVV 418 Query: 198 DEASGTPDIINKS-ILGFFTELNPNRFWIMTSNTRRLN 234 DEA ++ F N + + + T Sbjct: 419 DEAHRATGGYAYVEVVKFLRRFNQSFRVLALTATPGST 456 >gi|196230475|ref|ZP_03129337.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus Ellin428] gi|196225405|gb|EDY19913.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus Ellin428] Length = 591 Score = 40.3 bits (92), Expect = 0.43, Method: Composition-based stats. Identities = 27/237 (11%), Positives = 55/237 (23%), Gaps = 15/237 (6%) Query: 43 KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102 L + + + S T + G GKT A + + Sbjct: 7 TELGLSPELLKAVAKMGFEEASPIQSETIPQLLTGADVVGLSQTGSGKTAAFAIPAIERV 66 Query: 103 STR-PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161 ++ + + E++ ++ + F + + P Q Sbjct: 67 DGNLRAPQVLILCPT---------RELAMQVAEEVAKLAFFKRGVRELPIYGGQSYDRQL 117 Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL--- 218 G+ I + DEA D+ + + Sbjct: 118 RGLRDGAQIIIGTPGRVMDHLERKTLRLDQVGMIILDEADRMLDMGFRDDIETILGQAPA 177 Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275 + + +N P+ R Q TV ID ++E Sbjct: 178 ERQTVFFSATMPPAINQLVKKYTKEPVN--VRIQAQEMTVPAIDQSYYEVDRRSKLE 232 >gi|116873155|ref|YP_849936.1| helicase domain-containing protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742033|emb|CAK21157.1| helicase domain protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 442 Score = 40.3 bits (92), Expect = 0.43, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 33/152 (21%), Gaps = 11/152 (7%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +WQ E + + G GKT A L I P + Sbjct: 12 EKWQEHGYETPTE-IQRAMYQPIKDGADVLAVSPTGTGKTVAYALPTLEKIEAIPKTQWL 70 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 +A S + R W L++ A + Q + K I Sbjct: 71 VLAPSHELVMQITE----------VIRSWLPSDDLTVISLIGGANVKRQIEKLKKKPQII 120 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + DE Sbjct: 121 VASPGRALELIKQKKIKMHEIKMITLDECDQL 152 >gi|288556427|ref|YP_003428362.1| HKD family nuclease fused to DNA/RNA helicase of superfamily II [Bacillus pseudofirmus OF4] gi|288547587|gb|ADC51470.1| HKD family nuclease fused to DNA/RNA helicase of superfamily II [Bacillus pseudofirmus OF4] Length = 389 Score = 40.3 bits (92), Expect = 0.43, Method: Composition-based stats. Identities = 25/185 (13%), Positives = 53/185 (28%), Gaps = 36/185 (19%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P + QLE +E ++ + K + G+GKT L+A R + Sbjct: 213 PRQAQLEALEELERTLDDGYD-------KSLVVMATGLGKTYLSA------FFARRFKRV 259 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + IA+ E E+ + + + + Sbjct: 260 LFIAHRE---------EILYQAKKTFNHVMPDRTCGIFNAREKERDAD-----------F 299 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 + +S + DE + +L +F+ + +T+ Sbjct: 300 VFASIFSIANQKQVEEFDKDAFDLIIIDEFHHAAARSYQHVLEYFS---YSFLLGLTATP 356 Query: 231 RRLNG 235 R++G Sbjct: 357 DRMDG 361 >gi|228966921|ref|ZP_04127961.1| phage terminase, large subunit [Bacillus thuringiensis serovar sotto str. T04001] gi|229061552|ref|ZP_04198896.1| phage terminase, large subunit [Bacillus cereus AH603] gi|228717786|gb|EEL69436.1| phage terminase, large subunit [Bacillus cereus AH603] gi|228792774|gb|EEM40336.1| phage terminase, large subunit [Bacillus thuringiensis serovar sotto str. T04001] Length = 539 Score = 40.3 bits (92), Expect = 0.43, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 55/184 (29%), Gaps = 24/184 (13%) Query: 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS---I 110 WQ +F+ A+ + + + I GRG GKT A+ ++++ G++ I Sbjct: 54 WQ-KFLNALM-YGVRFKKDDRIVFDEVLILMGRGGGKTGYMAYDSFYMMTGHHGINNYDI 111 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 +A SE Q K + +V ++ + L E + Sbjct: 112 DVVATSEDQAK-RTFTDVYNVIN--------TPSFKEKFKKIFKWTLEEIQHKKTNSVMN 162 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 + V DEA +I + + R + T Sbjct: 163 YNTSNSRTKD--------GKRTGCVIFDEAHEY--ENYDNINVYTSGQGKVRGSRIIYTT 212 Query: 231 RRLN 234 + Sbjct: 213 TDGH 216 >gi|194366277|ref|YP_002028887.1| Terminase [Stenotrophomonas maltophilia R551-3] gi|194349081|gb|ACF52204.1| Terminase [Stenotrophomonas maltophilia R551-3] Length = 602 Score = 40.3 bits (92), Expect = 0.43, Method: Composition-based stats. Identities = 37/312 (11%), Positives = 78/312 (25%), Gaps = 63/312 (20%) Query: 70 VNNSNPTIFKCA-ISAGRGIGKTTLNAWMMLWLISTRP--GMSIICIANSETQLKNTLWA 126 F+ A I G+G GK+ + + L + G + +A+ + Q L+ Sbjct: 78 KQADGARRFRRAYIEEGKGNGKSPMAGGIALIGLCADQEAGAQVYAVASHKDQA-GILFR 136 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 + K + P ++ G E + D Sbjct: 137 DAVKMVKASP-----ALKKRLEFSGGEGKEYNIAHHKSQ--------SYFRPASRDVGKT 183 Query: 187 PHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL 245 V DE D I + + F +++T++ N + + Sbjct: 184 GSGYRPHFVLADEVHEMADGKIIEMMENGFKFRRSPLLFMITNSGSDRNSVAWAEHEHAV 243 Query: 246 EDWKRYQIDTRTVEGIDSGFHEGII----------SRYGLDSDVA--------------- 280 + + + D Sbjct: 244 KVAAGHHEAVND-PTFVGEVIDDRTFSFVCGLDDGDEPLEDPACWVKANPMLGITITDEY 302 Query: 281 ---RIEILGQFP--------------QQEVNNFIPHNYIEEAMSR-EAIDDLYAPLIMGC 322 R+++ Q P + ++ +E AM + L +G Sbjct: 303 LQGRVDLAKQIPSKLNEILRLNFCMWTDADHAWMSREIVEPAMQSFDKAQHHGKRLHLGL 362 Query: 323 DIAGEGGDKTVV 334 D++ + D T + Sbjct: 363 DLS-QNRDITAL 373 >gi|171058461|ref|YP_001790810.1| exodeoxyribonuclease V subunit alpha [Leptothrix cholodnii SP-6] gi|170775906|gb|ACB34045.1| exodeoxyribonuclease V, alpha subunit [Leptothrix cholodnii SP-6] Length = 739 Score = 40.3 bits (92), Expect = 0.43, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 51/177 (28%), Gaps = 37/177 (20%) Query: 41 KGKPLEHFSQPHR--WQLEFMEAVDVHCHSNVNNSNPTIFKCA-ISAGRGIGKTTLNAWM 97 + P R WQ + + A I+ G G GKT A + Sbjct: 231 LDRLFGGPPAPDRFDWQRSAC-------------AIALRGRLALITGGPGTGKTYTVARL 277 Query: 98 MLWLISTRPGM---SIICIANSET---QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151 + +++ P I A + +LK ++ + + + + LP + L S Sbjct: 278 LALVMAVHPQPQALRIALAAPTGKAAARLKQSIDSALQQLAAALP--GALDWGLLQQRLS 335 Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208 D++ + R H + DEAS + Sbjct: 336 QSLTLHKLLGARPDTRRFGRDAR-------------HPLEVDLLVVDEASMVHLEMM 379 >gi|328856768|gb|EGG05888.1| hypothetical protein MELLADRAFT_36442 [Melampsora larici-populina 98AG31] Length = 878 Score = 40.3 bits (92), Expect = 0.43, Method: Composition-based stats. Identities = 19/181 (10%), Positives = 48/181 (26%), Gaps = 19/181 (10%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GMS 109 +QL+ + + +N G+GKT + +M +L Sbjct: 201 EYQLKGLNWLANLYEQGINGILADEM--------GLGKTVQSISLMAYLAEVHNIWGPFL 252 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 +I A++ E+++++ L ++ + + + D + Sbjct: 253 VIAPASTLHN----WQQEITRFVPALKALPYWGSVKDRAILRKF---WNRKHLRYDREAP 305 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 T + + DEA + + ++T Sbjct: 306 FHVVITSYQLVVQDEKYFQTLKWQYMILDEAQAIKSSS-STRWKTLLGFHCRNRLLLTGT 364 Query: 230 T 230 Sbjct: 365 P 365 >gi|307245128|ref|ZP_07527221.1| RNA polymerase-associated protein rapA [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254084|ref|ZP_07535931.1| RNA polymerase-associated protein rapA [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258539|ref|ZP_07540276.1| RNA polymerase-associated protein rapA [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306854017|gb|EFM86229.1| RNA polymerase-associated protein rapA [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306863009|gb|EFM94956.1| RNA polymerase-associated protein rapA [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867443|gb|EFM99294.1| RNA polymerase-associated protein rapA [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 969 Score = 40.3 bits (92), Expect = 0.43, Method: Composition-based stats. Identities = 26/257 (10%), Positives = 63/257 (24%), Gaps = 19/257 (7%) Query: 33 MRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTI-FKCAISAGRGIGKT 91 + F P R ++ H + + ++ G+GKT Sbjct: 123 RFALRYRALQHQQAQFQSPLRGMRGIRASLIPHQLHIAKEVGQRVAPRVLLADEVGLGKT 182 Query: 92 TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151 ++ + + ++ + Q + W V F+ + + Sbjct: 183 IEAGMILQQQLFSGRVERVLVLVPESLQHQ---W-LVEMLRRFNLKFSLFDEERCADFDK 238 Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211 DS+ I + E P+ ++ + DEA Sbjct: 239 ADEDGNDVSENPFDSEALVIASIDWLESSPNRAKQVLASNWDMLIVDEAHHL---EWSEN 295 Query: 212 LGFF-------TELNPNRFWIMTSNTR--RLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262 ++T+ F + + + + Y ++ E D Sbjct: 296 EPSVGYQFVERLSKQTPAVLLLTATPEQLGQESHFARLALLDADRF--YDYNSFVAEQKD 353 Query: 263 SGFHEGIISRYGLDSDV 279 ++ D + Sbjct: 354 YKPVTDAVATLLNDKPL 370 >gi|290993372|ref|XP_002679307.1| dicer helicase [Naegleria gruberi] gi|284092923|gb|EFC46563.1| dicer helicase [Naegleria gruberi] Length = 857 Score = 40.3 bits (92), Expect = 0.43, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 48/161 (29%), Gaps = 28/161 (17%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q E + HC I A G GKT + A ++ +++ P ++ Sbjct: 108 REYQKELV----EHCKDE---------NTIIVAPTGAGKTFIAALLIHHMLNLNPFKKVL 154 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 I N + ++ ++ L W E + ++ + + + Sbjct: 155 FIVNQISLVEQ-----QARALREFGIEKVGAFHGEKKSIKNWKLETKDFTVLVCTIQIIL 209 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSI 211 YS+ + DE T + K + Sbjct: 210 NVLQYSDI---------FDDLQLLIFDECHHTHSNHPFKVL 241 >gi|237745794|ref|ZP_04576274.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] gi|229377145|gb|EEO27236.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] Length = 585 Score = 40.3 bits (92), Expect = 0.43, Method: Composition-based stats. Identities = 36/321 (11%), Positives = 84/321 (26%), Gaps = 33/321 (10%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 F++++ + N+ N AI R IG T A L G + I ++ S Sbjct: 138 FLDSLFDYQKEWWNSRNSRTR--AILKSRQIGATWYFAREALMDAVLT-GGNQIFLSASR 194 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177 Q V + LS ++ ++ ++ ++ Sbjct: 195 AQAYVFRQYIVQFAKEATGVELKGDPIVLSNGAHLYFLGTNARTAQGYHGNFYFDEFFWT 254 Query: 178 EERPD-----TFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232 + + + + H F+ ++ + + F + + Sbjct: 255 FKFEELNKVASGMALHKRWRKTYFSTPSAMSHEAYPFWTGDAFNKRRRKEEQVRI---DV 311 Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292 + W + W++ +G F + Y D ++ F + Sbjct: 312 SHKWLAEGRLCEDRIWRQIVTIEDAEKGGCDLFDIDELRNYEYSPDQFDNLLMCNFID-D 370 Query: 293 VNNFIPHNYIEEAM-SREAIDDLYAP----------LIMGCDIAGEGGDKTVVVFRRGN- 340 + P + ++ M + Y P + +G D + G + Sbjct: 371 TASVFPLSELQRCMVDSWEAWNDYKPFTARPFGNRPVWVGYDPSRSGD--SAGCVVMAPP 428 Query: 341 -------IIEHIFDWSAKLIQ 354 I + Sbjct: 429 LTFPGKFRIIEKHQYRGMDFA 449 >gi|239840444|gb|ACS32027.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.44, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ K + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEEKDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|209976540|gb|ACJ04184.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.44, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ K + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEEKDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|197310724|gb|ACH61717.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.44, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ K + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEEKDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|190161829|gb|ACE63533.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.44, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ K + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEEKDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|169635097|gb|ACA58324.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.44, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ K + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEEKDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|168483712|ref|ZP_02708664.1| putative phage terminase, large subunit [Streptococcus pneumoniae CDC1873-00] gi|168484664|ref|ZP_02709616.1| putative phage terminase, large subunit [Streptococcus pneumoniae CDC1873-00] gi|168484815|ref|ZP_02709760.1| putative phage terminase, large subunit [Streptococcus pneumoniae CDC1873-00] gi|169833564|ref|YP_001693473.1| putative phage terminase, large subunit [Streptococcus pneumoniae Hungary19A-6] gi|307066681|ref|YP_003875647.1| phage terminase-like protein large subunit [Streptococcus pneumoniae AP200] gi|168996066|gb|ACA36678.1| putative phage terminase, large subunit [Streptococcus pneumoniae Hungary19A-6] gi|172042018|gb|EDT50064.1| putative phage terminase, large subunit [Streptococcus pneumoniae CDC1873-00] gi|172042118|gb|EDT50164.1| putative phage terminase, large subunit [Streptococcus pneumoniae CDC1873-00] gi|172042965|gb|EDT51011.1| putative phage terminase, large subunit [Streptococcus pneumoniae CDC1873-00] gi|306408218|gb|ADM83645.1| Phage terminase-like protein, large subunit [Streptococcus phage PhiSpn_200] Length = 570 Score = 40.3 bits (92), Expect = 0.44, Method: Composition-based stats. Identities = 32/254 (12%), Positives = 63/254 (24%), Gaps = 27/254 (10%) Query: 32 VMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT 91 V WG + P +E + + P I RG GKT Sbjct: 75 VWLETTWGFYHTVEVTKTDPDT-----LEEYKDFEERRLIHEVP------IIVPRGTGKT 123 Query: 92 TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151 TL + + + I + E L A + L + + + Sbjct: 124 TLGSAI----------GEVGQIIDGEWGADIQLLAYSREQAGYLFNASRAMLSNEESLLH 173 Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211 + +S T + + + T+ DE D K + Sbjct: 174 YMREADILRSTK--QGILYETTNSLMSIKTSDYESLDGTNAHYNIFDEVHTYDDDFIKVV 231 Query: 212 LGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271 + WI + +F+ W +D + V + + Sbjct: 232 NDG--SSRKRKNWITWYISTNGTKR-DKLFDKYYNIWVDI-LDEKIVNHSVMPWIYQLDD 287 Query: 272 RYGLDSDVARIEIL 285 + + + + Sbjct: 288 VSEIHNPDMWQKAM 301 >gi|152965472|ref|YP_001361256.1| helicase c2 [Kineococcus radiotolerans SRS30216] gi|151359989|gb|ABS02992.1| helicase c2 [Kineococcus radiotolerans SRS30216] Length = 672 Score = 40.3 bits (92), Expect = 0.44, Method: Composition-based stats. Identities = 19/156 (12%), Positives = 35/156 (22%), Gaps = 11/156 (7%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 Q AV + + AG G GK+ + G +++ Sbjct: 26 REGQATMARAVTDAIR--------SRRHLLVQAGTGTGKSMAYLVPAVAHA-VHAGRAVV 76 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI--DSKHY 169 + + ++ + + R E L Y + G D Sbjct: 77 VTTATLALQAQVVERDLPRLAKAIAPRLHREPTWELLKGRSNYLCRNKLDGGFPSDEGTL 136 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 S E++ T D Sbjct: 137 FDVAGASSGPDAGGEGRLGREVVRLREWAESTSTGD 172 >gi|325293201|ref|YP_004279065.1| terminase large subunit/Phage Terminase [Agrobacterium sp. H13-3] gi|325061054|gb|ADY64745.1| putative terminase large subunit/Phage Terminase [Agrobacterium sp. H13-3] Length = 539 Score = 40.3 bits (92), Expect = 0.44, Method: Composition-based stats. Identities = 39/336 (11%), Positives = 79/336 (23%), Gaps = 64/336 (19%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GM 108 RWQ + + + + + RG KTTL A + L G Sbjct: 47 TRWQERIVRRIYGPRTPDG---QMIVKSVLLLMPRGNRKTTLAAALALLHTIGPEAVAGG 103 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 I A Q K + E + + + + ++ S L+ + Sbjct: 104 QAIFAAKDSDQAK-IAFNEAAGIIR----EDKRLVAATKIYGSKTGKRLINCDVK----- 153 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMT 227 ++ E H + DE + + +++ + P + T Sbjct: 154 -----KSSLEVLSSDGGKAHGLSPTFILADELHVWKNRELWEALKSSRVKKRPLTIIVST 208 Query: 228 ---SNTRRLNGWFYDIFNIPLED------------------------WKRYQIDTRT--V 258 N L + + I + W + V Sbjct: 209 AGAGNENLLYDEYVNACKIATGEKFNPSYLPILFMADPDDAWDDPATWHKANPGLADGFV 268 Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR--EAIDDLYA 316 + + L + +E + + Sbjct: 269 SIEEFENLVTDARDRPQERFAFLQYNLNIWQGASREPLFDMGIYDEGHDPNFDLAELESL 328 Query: 317 PLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKL 352 P +G D++ G D T + + W Sbjct: 329 PCYIGVDMSVNG-DLTAI----------VAAWKHGD 353 >gi|322699514|gb|EFY91275.1| putative DNA helicase [Metarhizium acridum CQMa 102] Length = 1535 Score = 40.3 bits (92), Expect = 0.44, Method: Composition-based stats. Identities = 16/118 (13%), Positives = 36/118 (30%), Gaps = 3/118 (2%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTT A ++ G +++ +++ T + N L + + +L ++ Sbjct: 1047 GTGKTTTIAHII--RALVSQGKTVLLTSHTHTAVDNILLKLKTDKIPVLRLGAPAKVHPE 1104 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + + I + + + DEAS Sbjct: 1105 VQDFAHLAGQPRKTFDEIKEAWHGTPIVATTCLGINHP-VFQERSFDYCIVDEASQIT 1161 >gi|317014088|gb|ADU81524.1| type II R-M system protein [Helicobacter pylori Gambia94/24] Length = 510 Score = 40.3 bits (92), Expect = 0.44, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 53/204 (25%), Gaps = 42/204 (20%) Query: 29 KNFVMRFFPWGIKG-------KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81 ++F+ W PL +P Q E +E + N Sbjct: 148 EDFIYSRIDWEKFDPTKTEDEIPLCDKKRPRPHQTEAIEQTKKYFSDPKNARGK-----L 202 Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE-------------- 127 I A G GKT + L ++ + +A S L + E Sbjct: 203 IMAC-GTGKTYTS----LKIMEALDPKITLFLAPSIALLSQ-TFREYAQEKSEPFYASIV 256 Query: 128 --------VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI--DSKHYTITCRTYS 177 K S + L L PS ++L ++K + I S Sbjct: 257 CSDDKTGQSKKNKSKNEDNDDIKFSELPLKPSTRLEDILSVYEKAQKENKRFIIFSTYQS 316 Query: 178 EERPDTFVGPHNTHGMAVFNDEAS 201 R + DEA Sbjct: 317 ALRIKEAQEAGLKGIDLIICDEAH 340 >gi|263613489|gb|ACY70776.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.44, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIIREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|263613409|gb|ACY70774.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.44, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIIREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|263612959|gb|ACY70761.1| polyprotein [Dengue virus 3] gi|263613134|gb|ACY70766.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.44, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIIREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|263612813|gb|ACY70757.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.44, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIIREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|263612559|gb|ACY70750.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.44, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIIREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|263612527|gb|ACY70749.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.44, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIIREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|263612496|gb|ACY70748.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.44, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIIREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|238926929|ref|ZP_04658689.1| CRISPR-associated helicase Cas3 [Selenomonas flueggei ATCC 43531] gi|238885163|gb|EEQ48801.1| CRISPR-associated helicase Cas3 [Selenomonas flueggei ATCC 43531] Length = 814 Score = 40.3 bits (92), Expect = 0.44, Method: Composition-based stats. Identities = 31/245 (12%), Positives = 62/245 (25%), Gaps = 30/245 (12%) Query: 3 RLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAV 62 RL S + +L++ L + AE SF + L FS P + + + + Sbjct: 215 RLDSAEFELDRPLTDEWETAEIWASFSD---------KLECKLAGFSLPKEPKAKKIAQL 265 Query: 63 DVHCHSN---VNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET- 118 + P IF+ + G GKT + L II + + Sbjct: 266 RKKISDDCLKAAEEEPGIFRLCV--PTGGGKTLASMRFALQHAQRYQKKRIIVVIPYTSI 323 Query: 119 ------QLKNTLW--AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 ++++ + + S + E + Sbjct: 324 IDQNVKEIRDIFRVDEAILEHHSNVITEADGEDTESMDWRRILTERWDVPIIFT---TQV 380 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII---NKSILGFFTELNP-NRFWIM 226 T + ++ V DE P + + F + Sbjct: 381 QFLNTLFAGGNSSIRRMNSLQDSIVIFDEIQTLPVRCTFLFNAAMNFLKDFCRITAVLCT 440 Query: 227 TSNTR 231 + Sbjct: 441 ATQPP 445 >gi|332030741|gb|EGI70417.1| Fanconi anemia group M protein [Acromyrmex echinatior] Length = 1326 Score = 40.3 bits (92), Expect = 0.45, Method: Composition-based stats. Identities = 24/211 (11%), Positives = 62/211 (29%), Gaps = 15/211 (7%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + G+GKT + A +M P I+ +A ++ + ++ ++ Sbjct: 47 RNTMVCLPTGLGKTFIAAVVMFNFWRWYPSGKIVFLAPTKPLVAQ----QIKACYEVMGI 102 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + +G + + + + T + + + + + H V Sbjct: 103 -----PNVDMIELTGAVIQKNREIAWLKKRIIFATPQVFHNDLEKSIIPSHL--IKCVVI 155 Query: 198 DEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRL--NGWFYDIFNIPLEDWKRYQID 254 DEA + + N + S T + I N+ + + + Sbjct: 156 DEAHKALGKHSYCECVRILSTQNQYFRILALSATPGNKLDNVHEVIQNLNISHLELRDEN 215 Query: 255 TRT-VEGIDSGFHEGIISRYGLDSDVARIEI 284 + V I+ + I+ + + Sbjct: 216 SIDIVPYINKRKVDIILVPLSNELAAFKERY 246 >gi|308516967|emb|CBW47072.1| N4 gp68-like protein [Roseovarius sp. 217 phage 1] Length = 537 Score = 40.3 bits (92), Expect = 0.45, Method: Composition-based stats. Identities = 29/285 (10%), Positives = 63/285 (22%), Gaps = 28/285 (9%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 K RG KTTL A + ++ + + +++ V K + Sbjct: 70 KITNLCARGTAKTTLMAEYLTLYLAMFNKIPGFGAVPGMLYISDSMDNGV-KSMRESVKS 128 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC-RTYSEERPDTFVGPHNTHGMAVFN 197 ++ + L E M +K+ + + + N + Sbjct: 129 RYYSSEFLQSWLPEEGVRFTENYMEFHNKNGGKFGVKMFGAKSGIRGTKIFNRRPVLAVM 188 Query: 198 D----EASGTPDIINKSILGFFTEL------NPNRFWIMTSNTRRLNGWFYDIFNIPL-- 245 D +A ++I I+ Y Sbjct: 189 DDLISDADSKSPTAMEAINDTVYSGVQYALDPTRHKMILNGTPFNKEDIVYQAIESGAWQ 248 Query: 246 -EDWKRYQ--------IDTRTVEGIDSGFHEGIISR--YGLDSDVARIEILGQFPQQEVN 294 W + + + + + R E++ + E Sbjct: 249 VNVWPVCKEFPCEEKDFSGAWEDRFTYDYVKEMYDSSVMEGKEKSFRQELMLRITSDESR 308 Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIA---GEGGDKTVVVF 336 + + D A + D TV+ Sbjct: 309 LIQESEIGWRSRQEILQKRKDYNFYITTDFATSSKQTADYTVISV 353 >gi|297529729|ref|YP_003671004.1| type III restriction protein res subunit [Geobacillus sp. C56-T3] gi|297252981|gb|ADI26427.1| type III restriction protein res subunit [Geobacillus sp. C56-T3] Length = 818 Score = 40.3 bits (92), Expect = 0.45, Method: Composition-based stats. Identities = 24/186 (12%), Positives = 45/186 (24%), Gaps = 36/186 (19%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 QP Q+E +E ++ + K + G+GKT L A R Sbjct: 223 QPRFAQVEALERLEAAYEEGYD-------KAMVVMATGLGKTYLAA------FFARRFSR 269 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ IA+ E L+ + L D Sbjct: 270 VLFIAHREEILRQ--------------------AKQSFERVIPDRTAGLYDGNQKDGNAD 309 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 + ++ + DE + + P +T+ Sbjct: 310 MVFASIFTLSMKKHLHSFRPDAFDLIVVDEFHHAAARSYERV---LCYFQPKFLLGITAT 366 Query: 230 TRRLNG 235 R + Sbjct: 367 PDRSDN 372 >gi|120602103|ref|YP_966503.1| phage terminase GpA [Desulfovibrio vulgaris DP4] gi|120562332|gb|ABM28076.1| phage terminase GpA [Desulfovibrio vulgaris DP4] Length = 641 Score = 40.3 bits (92), Expect = 0.45, Method: Composition-based stats. Identities = 37/298 (12%), Positives = 71/298 (23%), Gaps = 45/298 (15%) Query: 35 FFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN 94 W + + +P RW+ E C S P I I GKT L Sbjct: 37 VTEWCERHFRIIGGQRPGRWRREVFPY---TCTIMDAYSLPFIRVIGICGPPQTGKTALE 93 Query: 95 AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWY 154 + W I PG ++ + + + + + + +L E L Sbjct: 94 LGCLAWAIDRDPGP-VLMVLDQQDTAREMA---KDRVIPLLKASPPLEQYITGLADDETS 149 Query: 155 AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG- 213 + + M + R ++ + DE + Sbjct: 150 KSINLRHMTLHFGWAGSVSRLANKPVKH------------LLLDEVDKYDHDGKREAGPV 197 Query: 214 FFTELNPNRF-----WIMTSNTRRLNGW-----------FYDIFNIPL-EDWKRYQIDTR 256 F ++ S+ G F+ P ++ + Sbjct: 198 SLAMKRVRTFKHTHKCMLLSSPSTPRGEIMLCLAEARVIFHYFVRCPKCGVYQEMRFTHD 257 Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILG---QFPQQEVNNFIPHNYIEEAMSREAI 311 E D +AR G + + + +E R+ Sbjct: 258 DGEVGVVWPEGERDYAQVNDQMLARYRCRGCGALWNDHDRDV-----AVERGEWRDPE 310 >gi|310793920|gb|EFQ29381.1| type III restriction enzyme [Glomerella graminicola M1.001] Length = 1113 Score = 40.3 bits (92), Expect = 0.45, Method: Composition-based stats. Identities = 22/155 (14%), Positives = 52/155 (33%), Gaps = 12/155 (7%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 ++ G+GKT + A +ML I+ +A ++ V++ + + Sbjct: 197 NTLVALPTGLGKTFIAATIMLNYYRWTKDAKIVFVAPTK--------PLVAQQVDACFNI 248 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 +L +G A L + + + +T +T + + P + + D Sbjct: 249 VGIPRSETTL-LTGDTAPALRVNEWSSKRVFFMTPQTLQNDISHGYADP--KSIVLLVID 305 Query: 199 EASGTP-DIINKSILGFFTELNPNRFWIMTSNTRR 232 EA + ++ + N + + T Sbjct: 306 EAHRATGEYAYAKVVKRIRQYNSYFRLLALTATPG 340 >gi|263613309|gb|ACY70771.1| polyprotein [Dengue virus 3] gi|263613447|gb|ACY70775.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.45, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIIREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|263613267|gb|ACY70770.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.45, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIIREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|263613236|gb|ACY70769.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.45, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIIREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|263612782|gb|ACY70756.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.45, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIIREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|259496195|gb|ACW82872.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.45, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIIREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|259496193|gb|ACW82871.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.45, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIIREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|259496191|gb|ACW82870.1| polyprotein [Dengue virus 3] gi|263612369|gb|ACY70744.1| polyprotein [Dengue virus 3] gi|263612401|gb|ACY70745.1| polyprotein [Dengue virus 3] gi|263612436|gb|ACY70746.1| polyprotein [Dengue virus 3] gi|263612466|gb|ACY70747.1| polyprotein [Dengue virus 3] gi|263612596|gb|ACY70751.1| polyprotein [Dengue virus 3] gi|263612638|gb|ACY70752.1| polyprotein [Dengue virus 3] gi|263612678|gb|ACY70753.1| polyprotein [Dengue virus 3] gi|263612716|gb|ACY70754.1| polyprotein [Dengue virus 3] gi|263612844|gb|ACY70758.1| polyprotein [Dengue virus 3] gi|263612881|gb|ACY70759.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.45, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIIREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|228918668|ref|ZP_04082093.1| ABC transporter [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925216|ref|ZP_04088324.1| ABC transporter [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834449|gb|EEM79980.1| ABC transporter [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840969|gb|EEM86186.1| ABC transporter [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 536 Score = 40.3 bits (92), Expect = 0.45, Method: Composition-based stats. Identities = 28/213 (13%), Positives = 68/213 (31%), Gaps = 31/213 (14%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 Q E ++ +++ ++ K A+ G GKTT+ +L +I Sbjct: 325 ETAQKEILKNINLEINTGE--------KLALIGSNGSGKTTIV--KLLLGFYQNYLGNIY 374 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID------ 165 + +LK E+ + ++P + +++ + ++ E+ Sbjct: 375 I---NGIELKKINIRELRDRIGIIPQNIYLFENTIADNIKIGNTKITEKEFQQKINLLKK 431 Query: 166 ---------SKHYTITCRTYSEERPDTFVGPH--NTHGMAVFNDEA-SGTPDIINKSILG 213 +K + S+ + + + DEA S K+ Sbjct: 432 QGILADLDLNKKIIENGKNLSKGQIQQIAFARAFMKNFDVLIFDEATSNMDKNARKAFKE 491 Query: 214 FFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246 ++ N+ I S+ L+ + F + + Sbjct: 492 ILSQEFSNKICIFISHDNELSNFIDKKFVLLED 524 >gi|172707|gb|AAA35093.1| SRP receptor alpha-chain homologue [Saccharomyces cerevisiae] Length = 621 Score = 40.3 bits (92), Expect = 0.45, Method: Composition-based stats. Identities = 20/145 (13%), Positives = 40/145 (27%), Gaps = 8/145 (5%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 + + + + +I G+GK+T + + WL+ + I+ Sbjct: 377 DLLREIQSKRSKKDEEGKCDPYVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTF 436 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 + L V ++ H ++ Y EL E G I + Sbjct: 437 RSGAVEQLRVHVENLAQLMDDSHVRGSKNKRGKTGNDYVELFEAGYGGSDLVTKIAKQ-- 494 Query: 177 SEERPDTFVGPHNTHGMAVFNDEAS 201 + + V D A Sbjct: 495 ------AIKYARDQNFDIVLMDTAG 513 >gi|268566029|ref|XP_002639614.1| Hypothetical protein CBG12327 [Caenorhabditis briggsae] Length = 1043 Score = 40.3 bits (92), Expect = 0.45, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 49/153 (32%), Gaps = 15/153 (9%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 Q + + +N C+++AGRG GK+ + L +I Sbjct: 255 TACQAKALLRFLDVITEKQSNVT-----CSLTAGRGRGKSAAV-GLSLAGAVAFGYTNIF 308 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + + LK L+ V K L L ++ + + + + L+ + + K Sbjct: 309 VTSPTPENLKT-LFEFVVKGLDALDYQEHTDYELIQSANPEFKNCLVRVQVFREHKQTIQ 367 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 E+ + DEA+ P Sbjct: 368 YISPTDVEKLGQCE--------LIVIDEAAAIP 392 >gi|325420951|gb|ADZ13190.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.45, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + V DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLVIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|312142609|ref|YP_003994055.1| type III restriction protein res subunit [Halanaerobium sp. 'sapolanicus'] gi|311903260|gb|ADQ13701.1| type III restriction protein res subunit [Halanaerobium sp. 'sapolanicus'] Length = 801 Score = 40.3 bits (92), Expect = 0.45, Method: Composition-based stats. Identities = 23/187 (12%), Positives = 50/187 (26%), Gaps = 35/187 (18%) Query: 49 SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108 P Q+E + +++ ++ ++A G+GKT L A+ + Sbjct: 198 PHPRGAQIEALYELELAREEGISEG-------IVAAATGVGKTYLAAFDSI------DYD 244 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 ++ +A+ E LK L++ P+ + Sbjct: 245 KVLFVAHREEILKQ------------------AADTYLAIKPNKKISFFN-GQNKDKGGE 285 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 T + DE S L + + +T+ Sbjct: 286 VVFASVQTLHNERYLEEYFSQTEFNYIIIDEFH---HAAADSYLSVLSYFEADFMLGLTA 342 Query: 229 NTRRLNG 235 R++ Sbjct: 343 TPYRMDN 349 >gi|312869819|ref|ZP_07729961.1| helicase C-terminal domain protein [Lactobacillus oris PB013-T2-3] gi|311094665|gb|EFQ52967.1| helicase C-terminal domain protein [Lactobacillus oris PB013-T2-3] Length = 1074 Score = 40.3 bits (92), Expect = 0.45, Method: Composition-based stats. Identities = 19/150 (12%), Positives = 47/150 (31%), Gaps = 15/150 (10%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q E + AV+ + ++ G GKT + +M LI + I+ Sbjct: 374 RDYQKEAIRAVENAIGEGKT-------RILLAMATGTGKTRMAISLMYRLIKNKRARRIL 426 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + + ++ T + + P + ++ + + ++ + Sbjct: 427 YLVDRQSLANQTANSLKDNKIGSQPVSSIYNVKEFTDKMPASTTRIQISTVQGMVQRLFN 486 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + T + P + + DEA Sbjct: 487 STDTADKPTPGMYD--------FIIVDEAH 508 >gi|254556123|ref|YP_003062540.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1] gi|300766642|ref|ZP_07076559.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180120|ref|YP_003924248.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp. plantarum ST-III] gi|254045050|gb|ACT61843.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1] gi|300495742|gb|EFK30893.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045611|gb|ADN98154.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 444 Score = 40.3 bits (92), Expect = 0.45, Method: Composition-based stats. Identities = 24/169 (14%), Positives = 37/169 (21%), Gaps = 11/169 (6%) Query: 66 CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW 125 + V A G GKT W ML + G + +A S+ T Sbjct: 20 IQTAVAEPLAAGQSVLGLAPTGSGKTLAFTWPMLEALRVGEGTQALILAPSQELAMQTT- 78 Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185 R W ++ + A + Q + I Sbjct: 79 ---------NVVREWGQLIDAKVLAITGGANVKRQMEKLKKHPEVIVGTPGRITNLIADG 129 Query: 186 GPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233 H + DEA D I + + Sbjct: 130 KIKLGHLKMMIVDEADELLTDETLDQIREILDATFAETLQLGFFSATET 178 >gi|28377939|ref|NP_784831.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1] gi|28270773|emb|CAD63678.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1] Length = 444 Score = 40.3 bits (92), Expect = 0.45, Method: Composition-based stats. Identities = 24/169 (14%), Positives = 37/169 (21%), Gaps = 11/169 (6%) Query: 66 CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW 125 + V A G GKT W ML + G + +A S+ T Sbjct: 20 IQTAVAEPLAAGQSVLGLAPTGSGKTLAFTWPMLEALRVGEGTQALILAPSQELAMQTT- 78 Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185 R W ++ + A + Q + I Sbjct: 79 ---------NVVREWGQLIDAKVLAITGGANVKRQMEKLKKHPEVIVGTPGRITNLIADG 129 Query: 186 GPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233 H + DEA D I + + Sbjct: 130 KIKLGHLKMMIVDEADELLTDETLDQIREILDATFAETLQLGFFSATET 178 >gi|66826987|ref|XP_646848.1| DNA2/NAM7 helicase family protein [Dictyostelium discoideum AX4] gi|60474984|gb|EAL72920.1| DNA2/NAM7 helicase family protein [Dictyostelium discoideum AX4] Length = 2523 Score = 40.3 bits (92), Expect = 0.45, Method: Composition-based stats. Identities = 21/156 (13%), Positives = 45/156 (28%), Gaps = 16/156 (10%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL------- 132 I G GKTT +++ L++ P I+ S + + K L Sbjct: 1612 TLIQGPPGTGKTTTIYYLLSILLAINPKFKILVCGPSHASVDEVAKRCLKKSLVNIDGKP 1671 Query: 133 ---SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189 +M+ + S + ++ I + + S +P Sbjct: 1672 YLPNMVRIGKLQNISPDCHRISLFDKTPAQRKAIIRNATIIFATLSASGSKPIRSNF--- 1728 Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225 V DE++ + + S++ + Sbjct: 1729 -KANIVLVDESTQSSEP--ASLIPLCIGNIEKLILV 1761 >gi|320580086|gb|EFW94309.1| translation-regulating helicase, putative [Pichia angusta DL-1] Length = 1918 Score = 40.3 bits (92), Expect = 0.46, Method: Composition-based stats. Identities = 16/125 (12%), Positives = 36/125 (28%), Gaps = 16/125 (12%) Query: 80 CAISAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTL--WAEVSKWLSMLP 136 + + G GKT + A + +W PG ++ IA + ++ + W E + Sbjct: 1137 VFVGSPTGSGKT-VVAELAIWHAFNEFPGSKVVYIAPMKALVRERVDDWRE-----RISR 1190 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 + ++ + + + R + + V Sbjct: 1191 NTKHKVVEMTGDSLPEAREVREADIIITTPEKFDGISRNWQTRKFV-------QDVSLVI 1243 Query: 197 NDEAS 201 DE Sbjct: 1244 MDEIH 1248 >gi|238921297|ref|YP_002934812.1| type I restriction enzyme R protein (HsdR) [Edwardsiella ictaluri 93-146] gi|238870866|gb|ACR70577.1| type I restriction enzyme R protein (HsdR) [Edwardsiella ictaluri 93-146] Length = 1031 Score = 40.3 bits (92), Expect = 0.46, Method: Composition-based stats. Identities = 21/188 (11%), Positives = 54/188 (28%), Gaps = 5/188 (2%) Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICI--ANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 +G GK+ W+ W+ P ++ + + +++ V + + Sbjct: 278 QGSGKSLTMVWLAKWIRENVPNSRVLIVTDRTELDEQIESVFMGVDEEIYRTSSGSDLIA 337 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 +P + + + +++ T +E + + VF DE Sbjct: 338 TLNHPNPWLICSLVHKFGRRSEAEDAAATDDFITELQQSLTKTFRAKGDLFVFVDECH-- 395 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + T + P +I + T + + Y+ D +G+ Sbjct: 396 -RTQSGKLHDAMTAILPEALFIGFTGTPLMKKDKKKSVEVFGPYIHTYKFDEAVADGVVL 454 Query: 264 GFHEGIIS 271 Sbjct: 455 DLRYEARD 462 >gi|158851658|gb|ABW82030.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.46, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 47/185 (25%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L+ LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALNGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|326924726|ref|XP_003208576.1| PREDICTED: LOW QUALITY PROTEIN: u5 small nuclear ribonucleoprotein 200 kDa helicase-like [Meleagris gallopavo] Length = 2079 Score = 40.3 bits (92), Expect = 0.46, Method: Composition-based stats. Identities = 20/161 (12%), Positives = 40/161 (24%), Gaps = 15/161 (9%) Query: 54 WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q +F + + V NS+ +F + A G GKT + +L ++ + Sbjct: 1264 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1320 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 I E + K+ L + S + Sbjct: 1321 YITPMEALAEQVFMDWYEKFQERLNKKVVLLTGETSTDLK----------LLGKGNIIIS 1370 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212 T + + + DE + Sbjct: 1371 TPEKWDILSRRWKQRKNVQNVNLFIVDEVHLIGGENGPVLE 1411 >gi|197104450|ref|YP_002129827.1| type I restriction-modification system, R subunit [Phenylobacterium zucineum HLK1] gi|196477870|gb|ACG77398.1| type I restriction-modification system, R subunit [Phenylobacterium zucineum HLK1] Length = 815 Score = 40.3 bits (92), Expect = 0.46, Method: Composition-based stats. Identities = 21/195 (10%), Positives = 51/195 (26%), Gaps = 14/195 (7%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST- 104 P +Q+ + A + + + G GKT A+ ++W + Sbjct: 161 GSGKAPRYYQVNAVNAAVEAIAKGRD-------RVLLVMATGTGKTY-TAFQIIWRLWKA 212 Query: 105 RPGMSIICIANSETQLKNTL---WAEVSKWLSMLPHRHWF--EMQSLSLHPSGWYAELLE 159 I+ +A+ + T+ + ++ L + + + + Sbjct: 213 GQKKRILFLADRNILVDQTMVNDFRPFGPAMAKLSTKSKTIERADGTEVDLTLAMDKRRR 272 Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219 + T EER F + DE + + + Sbjct: 273 VDTAFEIYLGLYQAITGPEERQKIFKDFSPGFFDLIVIDECHRGSAADDAAWREILEHFS 332 Query: 220 PNRFWIMTSNTRRLN 234 +T+ + Sbjct: 333 GATQIGLTATPKETT 347 >gi|91218310|ref|ZP_01255255.1| ATP-independent RNA helicase [Psychroflexus torquis ATCC 700755] gi|91183519|gb|EAS69917.1| ATP-independent RNA helicase [Psychroflexus torquis ATCC 700755] Length = 443 Score = 40.3 bits (92), Expect = 0.46, Method: Composition-based stats. Identities = 14/153 (9%), Positives = 39/153 (25%), Gaps = 17/153 (11%) Query: 55 QLEFME----AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS-TRPGMS 109 Q + + V + + G GKT + +L ++ P + Sbjct: 8 QEDILRKLNIQVLNPMQEEAIPLIENTTNTILLSPTGTGKTLAFSLPLLTILDPESPDVQ 67 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ + S E++ + + + +++ + + + I Sbjct: 68 VLILVPS---------RELAIQIEQVIRTMGSGYKVNAVY---GGRPVSKDKIEIKHNPA 115 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 + T + DE Sbjct: 116 ILIGTPGRILDHFNSERFSKTSIQTLILDEFDK 148 >gi|329124082|ref|ZP_08252629.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Haemophilus aegyptius ATCC 11116] gi|327467507|gb|EGF13005.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Haemophilus aegyptius ATCC 11116] Length = 727 Score = 40.3 bits (92), Expect = 0.46, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 81/302 (26%), Gaps = 29/302 (9%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIA 114 E ++ ++ V + AG G GKT + + WLI+ SI+ + Sbjct: 6 ELLDGLNDKQREAVAAPLGNR---LVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 62 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 + S H+ + + +G+ + Sbjct: 63 FTNKAAAEMRHRIQSTLAKHAQHQLFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSE 122 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 + HN DE + P + + + Sbjct: 123 -DQLRLIKRLLKLHN-------FDEKAF-PPKQACWYINNKKDEGLR--------PNDIE 165 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294 + ++ ++ YQ +D + + +F V+ Sbjct: 166 DFNDRQEREWIKIYQIYQDTCDRAGLVDFAELLIRVYELFEKKPLILQRYQQRFQHILVD 225 Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354 F N I+ + + +++ D D++ + RG IE+I + Sbjct: 226 EFQDTNKIQYK-WIKILAGKTGKVMIVGD-----DDQS-IYGWRGAQIENIQKFLKDFKA 278 Query: 355 ET 356 ET Sbjct: 279 ET 280 >gi|320167619|gb|EFW44518.1| RNA helicase [Capsaspora owczarzaki ATCC 30864] Length = 2274 Score = 40.3 bits (92), Expect = 0.46, Method: Composition-based stats. Identities = 21/176 (11%), Positives = 43/176 (24%), Gaps = 23/176 (13%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L FS + Q + + H + A G GKT + A + + + Sbjct: 1405 LYRFSHFNPIQTQVFHTLYHTDH-----------NVLLGAPTGSGKT-IVAELAAYRVFN 1452 Query: 105 -RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163 P ++ IA + ++ + + ++ L R E+ Sbjct: 1453 EYPHTKVVYIAPLKALVRERMDDWLERFQRRLGKRV-VELTGDFTPDLQALHRADVIVTT 1511 Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219 + + DE D + + N Sbjct: 1512 PEKWDGISRSWQNRSYV---------KAVSLIIIDEIHLLGDDRGPVLEVIVSRTN 1558 >gi|312069940|ref|XP_003137916.1| type III restriction enzyme [Loa loa] gi|307766923|gb|EFO26157.1| type III restriction enzyme [Loa loa] Length = 1032 Score = 40.3 bits (92), Expect = 0.46, Method: Composition-based stats. Identities = 31/262 (11%), Positives = 61/262 (23%), Gaps = 24/262 (9%) Query: 22 AECVLSFKNFVMRFFPWGIKG-KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKC 80 + +K + M+ F + +Q E V C Sbjct: 259 SRTQEHYKKYRMKAFSDEKLERLEDAESIELRPYQQEL---VATACRG---------VNT 306 Query: 81 AISAGRGIGKTTLNAWMMLWLIST----RPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136 I A G GKT + A ++L T + + + ++ ++++L Sbjct: 307 IICAPTGSGKTVVAAHIILEHFRTMKAADKPSRVAILVPTIPLVEQQCI-MLNRYLRK-- 363 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 W + S S + + I R D + T Sbjct: 364 -TFWVDGMSGSEPVDENGRAPNVLASHVTVFTPQIFINLLRSIRRD--DRLYFTDFSMFI 420 Query: 197 NDEASGTP-DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255 DE D ++ + + I+ G L+ Sbjct: 421 FDECHHCDGDHPYHVLMRMLHRFDGPKPQIVGLTASLPLGAGRANVEAALDHMMDLCAKL 480 Query: 256 RTVEGIDSGFHEGIISRYGLDS 277 H + + Sbjct: 481 SAHSISTVRKHMENLRYFVKPP 502 >gi|237805399|ref|ZP_04592103.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. oryzae str. 1_6] gi|331026506|gb|EGI06561.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. oryzae str. 1_6] Length = 355 Score = 40.3 bits (92), Expect = 0.46, Method: Composition-based stats. Identities = 27/194 (13%), Positives = 50/194 (25%), Gaps = 34/194 (17%) Query: 82 ISAGR--------GIGKTTLNAWMMLWLISTRPGM------SIICIANSETQLKNTLWAE 127 + AGR G GKT A +L ++ + +A + +L + + Sbjct: 3 VLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNSIRALVLAPT-RELADQVHES 61 Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187 + ++ LP LS + + + Q M + + Sbjct: 62 IRQYAEHLP---------LSTYAAYGGVSINPQMMKLRKGVDVLVATPGRLLDLHRQKAV 112 Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247 + + DEA D+ P I+ + ED Sbjct: 113 KFSQLQTLILDEADRMLDMGFI----------PQVRQIIRQTPHKGERQTLLFSATFTED 162 Query: 248 WKRYQIDTRTVEGI 261 T I Sbjct: 163 VMNLAKQWTTEPSI 176 >gi|241794222|ref|XP_002414494.1| activating signal cointegrator 1 complex subunit 3, helc1, putative [Ixodes scapularis] gi|215508705|gb|EEC18159.1| activating signal cointegrator 1 complex subunit 3, helc1, putative [Ixodes scapularis] Length = 1531 Score = 40.3 bits (92), Expect = 0.46, Method: Composition-based stats. Identities = 18/161 (11%), Positives = 41/161 (25%), Gaps = 21/161 (13%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L FS + Q + + + + A G GKT M + + Sbjct: 901 LYSFSHFNPIQTQIFHTLYHTD-----------YNVLLGAPTGSGKTIAAEIAMFRIFNV 949 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 P ++ IA + ++ + W + E + + + Sbjct: 950 NPSSKVVYIAPLKALVRER----IKDW------KVRLEEKLDKKVAELTGDVTPDFRVIT 999 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 ++ T + + + DE + Sbjct: 1000 NAHVIVTTPEKWDGISRSWHTRGYVKDVSLIIIDEIHLLAE 1040 >gi|205320896|gb|ACI03010.1| hypothetical protein V35_56 [uncultured bacterium HHV35] Length = 875 Score = 40.3 bits (92), Expect = 0.47, Method: Composition-based stats. Identities = 24/180 (13%), Positives = 50/180 (27%), Gaps = 12/180 (6%) Query: 52 HRWQLEFMEAVDVHCHSNVN--NSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +Q E + + N +F A G GKT + A +L+L + Sbjct: 45 RSYQTEALRYLHYAQSHNEADIRFKHLLFNMA----TGSGKTMVMASAILYLFKEYGYQN 100 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS-----GWYAELLEQSMGI 164 I +++ ++ T ++K S E++ + + + Sbjct: 101 YIFFVHTDAIIQKTKENLLNKLSSKYLFAQSIEIEGERIVIEAVDIFPRQPSKNTIYLKL 160 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224 + H +E T+ + + DEA + W Sbjct: 161 STIHKIHDELNSYKENSITYEDL-AEIPLVLLGDEAHHFNAETKAKGKSKTSTEYEELTW 219 >gi|152974577|ref|YP_001374094.1| type III restriction protein res subunit [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023329|gb|ABS21099.1| type III restriction protein res subunit [Bacillus cytotoxicus NVH 391-98] Length = 812 Score = 40.3 bits (92), Expect = 0.47, Method: Composition-based stats. Identities = 30/195 (15%), Positives = 54/195 (27%), Gaps = 36/195 (18%) Query: 40 IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99 P E P Q+ +E ++ N K I G+GKT L A+ Sbjct: 211 EPTAPYETKIAPRFAQVPALEQLENTLEEGYN-------KAMIVMATGLGKTYLAAFFAK 263 Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159 ++ +A+ E L + E + Sbjct: 264 RF------KRVLFVAHLEEIL------------------NQAEQSFQRVIRDKTTGIYNG 299 Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219 + + + +T S +R + DE + +L +F N Sbjct: 300 KRKEGEKDVVFASIQTLSRKRH--LENFSPDDFDLIIVDEFHHAAANSYQKVLDYF---N 354 Query: 220 PNRFWIMTSNTRRLN 234 PN +T+ R + Sbjct: 355 PNFLLGITATPDRND 369 >gi|238855614|ref|ZP_04645915.1| ATP-dependent RNA helicase [Lactobacillus jensenii 269-3] gi|260665326|ref|ZP_05866174.1| RNA helicase [Lactobacillus jensenii SJ-7A-US] gi|282933012|ref|ZP_06338406.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii 208-1] gi|238831758|gb|EEQ24094.1| ATP-dependent RNA helicase [Lactobacillus jensenii 269-3] gi|260560830|gb|EEX26806.1| RNA helicase [Lactobacillus jensenii SJ-7A-US] gi|281302866|gb|EFA95074.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii 208-1] Length = 452 Score = 40.3 bits (92), Expect = 0.47, Method: Composition-based stats. Identities = 30/213 (14%), Positives = 54/213 (25%), Gaps = 27/213 (12%) Query: 40 IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99 G +F +P + Q E + T + A G GKT A+++ Sbjct: 15 QAGLEKINFKKPTKVQAEVI------------PVFLTGKNMLVQAATGSGKTH--AYLIP 60 Query: 100 WLISTRPGMS---IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156 L P I+ A S + V++ L + +G Sbjct: 61 ALNEVAPSSQTTQIVITAPSRELAQQLY--NVARQLRDASNLDL-----SISLLAGGSDR 113 Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT 216 + S I + + DEA + D+ + Sbjct: 114 ERQISKAESKAPQVIVATPGRLLDFAKKRIINLENTKCFIIDEADMSLDLGFLGDIDQVA 173 Query: 217 ELNPNRFWIMTSN---TRRLNGWFYDIFNIPLE 246 P I + +L+ + P Sbjct: 174 ARMPKTVQIAAFSATIPVKLDNFLRKYMQKPER 206 >gi|225010681|ref|ZP_03701151.1| LAO/AO transport system ATPase [Flavobacteria bacterium MS024-3C] gi|225005234|gb|EEG43186.1| LAO/AO transport system ATPase [Flavobacteria bacterium MS024-3C] Length = 335 Score = 40.3 bits (92), Expect = 0.47, Method: Composition-based stats. Identities = 27/235 (11%), Positives = 65/235 (27%), Gaps = 17/235 (7%) Query: 63 DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN 122 + NP + IS G+GK+TL + ++L+ ++++ I S Q Sbjct: 42 AQELEVAFSKENPNTIRVGISGVPGVGKSTLIEALGMYLVEKGLRLAVLTIDPSSQQSGG 101 Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182 ++ + ++ + H+ + + + G A+ S+ + Sbjct: 102 SILGDKTRMDQLAAHKSAYIRTTAAASTLGGVAQNTRSSILFCEAAGFDVIIVETVGVGQ 161 Query: 183 TFVGPHNTHGMAVFN------DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236 + H + DE G + + + Sbjct: 162 NELEVHEMVDALLLLQLPGAGDEIQGIKRGLLEVADALLINKADGAQAPL-------AKK 214 Query: 237 FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL---GQF 288 F + ++ + + + E + S I + G F Sbjct: 215 AQQYFKASVHGFRPRKNGW-EPPVLLASAIENRGVKEVWQSIEYFIRLQKKHGDF 268 >gi|163759251|ref|ZP_02166337.1| prophage LambdaW4, terminase large subunit, putative [Hoeflea phototrophica DFL-43] gi|162283655|gb|EDQ33940.1| prophage LambdaW4, terminase large subunit, putative [Hoeflea phototrophica DFL-43] Length = 669 Score = 40.3 bits (92), Expect = 0.47, Method: Composition-based stats. Identities = 18/213 (8%), Positives = 45/213 (21%), Gaps = 26/213 (12%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 A+ G TT+ I R ++ + + L + + Sbjct: 73 IAVRKSAQTGFTTMLLAAAA-YIIDRDPCRVMIVQPTSGALADF-----------NKDKL 120 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 ++ + + ++ + + ++ + DE Sbjct: 121 TPTLEQSPVLAAKIRSQTSRSGDASTVTSKRFQGGSITLAIANSAADLRSKTVKIALCDE 180 Query: 200 ASGTPDIINKSILGF-FTELNPNRFWIM-------TSNTR-RLNGWFYDIFNIPLEDWKR 250 PD ++ E F + S + + + + Sbjct: 181 IDEYPDDLDGQGDPMSMIEARQESFLMSGEWLRAYVSTPTIKSVSRIDAQWERSDKRYWH 240 Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283 G F +Y E Sbjct: 241 MPC-----PGCGEMFKYEFDRKYFRFKAEWPHE 268 >gi|270005385|gb|EFA01833.1| hypothetical protein TcasGA2_TC007435 [Tribolium castaneum] Length = 1011 Score = 40.3 bits (92), Expect = 0.47, Method: Composition-based stats. Identities = 34/245 (13%), Positives = 70/245 (28%), Gaps = 33/245 (13%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + + S +++A RG GK+ + + +I + Sbjct: 257 QGKALLKFIEAISEKTLRST-----VSLTAARGRGKSAAL-GLSVAAAVAFGYSNIFVTS 310 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 S L NT + V K L ++ + + + ++ ++ D + + Sbjct: 311 PSPENL-NTFFEFVFKGFDALEYQEHIDYSLVQSTNPEFNKAIVRVNIFRDHRQTIQYIQ 369 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 + + + DEA+ P KS+LG + F T N Sbjct: 370 PTDSQ--------RLSQAELLVIDEAAAIPLPYVKSMLGPYL-----VFLASTINGYEGT 416 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSG-------------FHEGIISRYGLDSDVAR 281 G + + + + T E I + G D + Sbjct: 417 GRSLSLKLLQQLRIQAVPVGANTNAANKKDSGAATGRTLHEVTLDESIRYKPGDDVEAWL 476 Query: 282 IEILG 286 ++L Sbjct: 477 TKLLC 481 >gi|157867656|ref|XP_001682382.1| hypothetical protein [Leishmania major strain Friedlin] gi|68125835|emb|CAJ03973.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 1061 Score = 40.3 bits (92), Expect = 0.47, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 10/125 (8%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 C ++AGRG GK+ M + + +I+C A + + TL+ + L L +R Sbjct: 287 CVVTAGRGRGKSAAL-GMTIAGAIAQGYSNIMCTAPTPENV-QTLFEFAIRGLKELGYRE 344 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + ++L + + ++ + DE Sbjct: 345 RTDFEALQGVSEEFAKCFIRINVFRGHRQTVQFVSAT--------DTAKFAQAELCVIDE 396 Query: 200 ASGTP 204 A+ P Sbjct: 397 AAALP 401 >gi|70726359|ref|YP_253273.1| hypothetical protein SH1358 [Staphylococcus haemolyticus JCSC1435] gi|68447083|dbj|BAE04667.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 448 Score = 40.3 bits (92), Expect = 0.47, Method: Composition-based stats. Identities = 21/203 (10%), Positives = 52/203 (25%), Gaps = 25/203 (12%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI-STR 105 F +P Q + + + G GK+ ++ I Sbjct: 23 KFDKPTEIQNRIIPRIKKGV------------NLIGQSQTGTGKSHAFLLPLIDKIDVEN 70 Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 I +A + E+++ L + Q + + ++ + Sbjct: 71 KEPQSIVVAPT---------RELAQQLYQAANHLATFKQGIKVSLFIGGTDIEKDRQRTS 121 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD---IINKSILGFFTELNPNR 222 ++ + H + DEA D I + ++ + N + Sbjct: 122 NQPQLVIGTPTRINDLAQSGHLHAHLASYLIVDEADLMIDLGLIEDVDLIASRLDENSHI 181 Query: 223 FWIMTSNTRRLNGWFYDIFNIPL 245 + + L + + P Sbjct: 182 AVFSATIPKSLQPFLNKYLSNPE 204 >gi|289450361|ref|YP_003475500.1| type III restriction enzyme, res subunit [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184908|gb|ADC91333.1| type III restriction enzyme, res subunit [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 878 Score = 40.3 bits (92), Expect = 0.48, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 56/186 (30%), Gaps = 17/186 (9%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q E + + + N I A G GKT + A ++L+L + + Sbjct: 37 REYQKEAFQYFVTYFEKDGLRKNKQIHTLFHMA-TGSGKTVMMAGLILYLYTKGYRKFLF 95 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + + N L +L+ L ++ F L ++ S + Sbjct: 96 FVNQT-----NILKKTEENFLNTLSSKYLFSDNLSYLGTKIKVKKVDRFSDTALDDDIEL 150 Query: 172 TCRTYSEERPDTFVGPHN--------THGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223 T + D + N + +DE+ K TE + + Sbjct: 151 LFTTTQKLHTDMWFAKENAPTYADFENDKIVFISDESHHINSDTKK---KTSTEEDAEKS 207 Query: 224 WIMTSN 229 W T N Sbjct: 208 WEYTVN 213 >gi|257066575|ref|YP_003152831.1| DEAD/DEAH box helicase domain-containing protein [Anaerococcus prevotii DSM 20548] gi|256798455|gb|ACV29110.1| DEAD/DEAH box helicase domain protein [Anaerococcus prevotii DSM 20548] Length = 536 Score = 40.3 bits (92), Expect = 0.48, Method: Composition-based stats. Identities = 29/226 (12%), Positives = 57/226 (25%), Gaps = 26/226 (11%) Query: 57 EFMEAVDV-------HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 E + A+D + G GKT A ++ I Sbjct: 11 EILRAIDDLGYEKPSPIQEESIPHLLEGNDLIGKSQTGSGKTAAFAIPIIENIEANGITQ 70 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 + + + +L + E+ K + + + + ++ Q + Sbjct: 71 ALILCPT-RELCIQVSKEIEKLYK--------YKKEIKILSVYGGSHIVRQIKSLKKGVE 121 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 + V DEA D + + +F + +N Sbjct: 122 IVVGTPGRLMDLMRRKVLKLDQLKTVVLDEA----DEMFDMGF-----RDDMKFILDRTN 172 Query: 230 TRRLNGWFYDIFNIP-LEDWKRYQIDTRTVEGIDSGFHEGIISRYG 274 R +F E K YQ + V+ I +Y Sbjct: 173 PNRQTCFFSATMGPEIQEFSKLYQTNPYEVKIKSKEVTVDRIDQYY 218 >gi|262066432|ref|ZP_06026044.1| putative helicase [Fusobacterium periodonticum ATCC 33693] gi|291379859|gb|EFE87377.1| putative helicase [Fusobacterium periodonticum ATCC 33693] Length = 942 Score = 40.3 bits (92), Expect = 0.48, Method: Composition-based stats. Identities = 28/194 (14%), Positives = 64/194 (32%), Gaps = 35/194 (18%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P+ Q++ ++ ++ N + + + G GKT L+A + + I Sbjct: 210 PNSMQVQALKNLEETRKEND--------RALLISATGTGKTYLSA----FDVKQAKAKKI 257 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + +A+ K L + +L ++ E+ + + I+ K Sbjct: 258 LFVAHR----KVILERSKISYQRILKNKKM---------------EIFDSNFQINDKDEV 298 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 + + + + + DE +SI +F P +T+ Sbjct: 299 VFAMVQTLNKEKNLNIFPKDYFDYIIIDEVHHGGAKTYQSIFEYFR---PKFLLGITATP 355 Query: 231 RRLNGW-FYDIFNI 243 R + + Y +FN Sbjct: 356 ERTDDFNIYKLFNY 369 >gi|224003239|ref|XP_002291291.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220973067|gb|EED91398.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 1115 Score = 40.3 bits (92), Expect = 0.48, Method: Composition-based stats. Identities = 19/135 (14%), Positives = 37/135 (27%), Gaps = 14/135 (10%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 +++A RG GK+ + L + S++ A L + + L L ++ Sbjct: 313 VSLTAPRGRGKSAAL-GLCLAGAISFGFNSVVVTAPEPENLVSVFQFLIEG-LKALKYQE 370 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC----------RTYSEERPDTFVGPHN 189 ++ + I +T +P Sbjct: 371 HYDYTIGYNYGMDSNEGNNRGEKAGRDNIKCIVSVEIHGRGTQRQTVRYVKPSDVDKFVG 430 Query: 190 THGMAVFNDEASGTP 204 V DEA+ P Sbjct: 431 AE--LVAVDEAAAIP 443 >gi|167626971|ref|YP_001677471.1| DNA/RNA helicase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596972|gb|ABZ86970.1| DNA/RNA helicase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 912 Score = 40.3 bits (92), Expect = 0.48, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 63/235 (26%), Gaps = 42/235 (17%) Query: 8 DQKLEQELHE---MLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQ----PHRWQLEFME 60 D EQ L E + AE + + F + P++ Q + +E Sbjct: 138 DPTTEQILAEFDYLFAKAEYARDIIQQYSQIYQQISSNILTYRFIETKISPNKVQQDALE 197 Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 +D N K I + G GKT L+A + ++ + I + Sbjct: 198 NLDRLRQQGKN-------KSLIISATGTGKTFLSA----FDVAKVKPKRCLFIVHRT--- 243 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 N + ++ + P+ + + + + Sbjct: 244 -NIAIKAKETFEKVIKDKTLGLYTGEVKDPADY-----------------LFATVQTLKN 285 Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 P T + DE K + + P MT+ R + Sbjct: 286 PQTLASFETNEFDYIIVDEVHHVEAQSYKKV---LSHFKPKFLLGMTATPERSDN 337 >gi|292654216|ref|YP_003534113.1| helicase [Haloferax volcanii DS2] gi|291372864|gb|ADE05091.1| helicase [Haloferax volcanii DS2] Length = 734 Score = 40.3 bits (92), Expect = 0.49, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 55/207 (26%), Gaps = 18/207 (8%) Query: 48 FSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107 + +P+ Q M + + G GKT L Sbjct: 22 YDEPYPNQEAAMSGIADAL--------DDERNVLLEGATGTGKTISALVPALSYAREH-D 72 Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE------LLEQS 161 +++ N Q++ + + F +S H + E Sbjct: 73 KTVVITTNVHQQMRQFVEDARAITREEAIRAVVFRGKSSMCHIDVGFQECQTLRDTTRSI 132 Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221 + +S ++ +T S + DE D + + G + E N Sbjct: 133 VEKESDKAELSEQTQSLLDGIREGESGAADARSAVTDELDAIDDELAELKEGNYCEHYYN 192 Query: 222 RFWIMTSNTRRLNGWFYDIFNIPLEDW 248 T NT W +D P E + Sbjct: 193 NL---TRNTDEFFQWLFDDVRTPDEIF 216 >gi|228538220|gb|ACQ44380.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.49, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|81966966|sp|Q99D35|POLG_DEN3C RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 gi|12711600|gb|AAK01920.1|AF317645_1 polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.49, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|53804974|ref|YP_113170.1| CRISPR-associated helicase Cas3 [Methylococcus capsulatus str. Bath] gi|53758735|gb|AAU93026.1| CRISPR-associated helicase Cas3 [Methylococcus capsulatus str. Bath] Length = 732 Score = 40.3 bits (92), Expect = 0.49, Method: Composition-based stats. Identities = 34/237 (14%), Positives = 67/237 (28%), Gaps = 20/237 (8%) Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 + A + P +F + G GKT + L I+ + Sbjct: 227 LRAQVLAQCRTKAEEAPGLFSLTV--PTGGGKTLSSLAFALEHAVHHGQRRIVYAIPYTS 284 Query: 119 QLKNT--LWAEV--SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 ++ T ++ E+ + + + S S + L + + R Sbjct: 285 IIEQTADIFREIFGEAVIEHHSNLDPDRETAKSRLMSENWDAPLVVTTNVQLFESLFAAR 344 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF---FTELNPNRFWIMTSN-- 229 T + HN + DEA P IL T + T+ Sbjct: 345 TSQCRK------LHNLVDSVIVLDEAQLLPPEFLDPILEVLRDLTAHYGVTMVLSTATQP 398 Query: 230 ---TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283 R+ GW +D E ++ R ++ + + + + + RI Sbjct: 399 AFKPRQGFGWKFDGLENVREIMADPELLYRDLKRVAVKLPDDLHAPEDWPTLAERIR 455 >gi|302343668|ref|YP_003808197.1| Terminase [Desulfarculus baarsii DSM 2075] gi|301640281|gb|ADK85603.1| Terminase [Desulfarculus baarsii DSM 2075] Length = 540 Score = 40.3 bits (92), Expect = 0.49, Method: Composition-based stats. Identities = 40/331 (12%), Positives = 73/331 (22%), Gaps = 64/331 (19%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS-- 109 WQ + ++A+ + K ++ R GKT L A + L + Sbjct: 60 RPWQKKIVKALY-----RTRGGRRVVRKALLTLPRKNGKTALAAALALAHLIGPEAEQRG 114 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 + A ++ + ++AE+ + +P + Sbjct: 115 QVYSAAADRGQASIIFAEMEAVIGAVPEFA-ARCNVQRFRKAIEDDVTGSVYH------- 166 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 H V DE + L ++ S Sbjct: 167 ---------ALSSDDRKAHGLSPSFVVYDELAQARTRHLFDNLDTGAGARREPLMVVIST 217 Query: 230 TRRLNGWFYDIFN--------------------------IPLEDWKRYQIDTRTVEGIDS 263 + + + + + W D Sbjct: 218 --QSSDHHHVMSELVEYGRKVLDGVIEDETFLPIIYAAPPDADPWSEEVWRACNPALGDF 275 Query: 264 GFHEGII------SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAM-SREAIDDLYA 316 E + R V R L Q P + FI E + Sbjct: 276 RSLEEMRQFAAQAKRIPAKETVFRALYLNQ-PVEVDGRFIAQADWEACRGEVDPEALRGR 334 Query: 317 PLIMGCDIAGEGGDKTVVVFR---RGNIIEH 344 P G D+ D T +V G + Sbjct: 335 PCWAGLDLGST-TDLTALVLYFPEDGGAVLP 364 >gi|221070356|gb|ACL99058.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.49, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|30387431|ref|NP_848156.1| hypothetical protein pNAC3_p7 [Bifidobacterium longum] gi|30265968|gb|AAM66776.1| unknown [Bifidobacterium longum] Length = 1387 Score = 40.3 bits (92), Expect = 0.49, Method: Composition-based stats. Identities = 38/299 (12%), Positives = 70/299 (23%), Gaps = 46/299 (15%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 + G GKT + + + R + IA + EV Sbjct: 504 VVEGAAGAGKTHMLNAVNDY---CRENGKRLVIATPTQKAALVAGEEVG----------- 549 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT----FVGPHNTHGMAVF 196 A + S+ R +T + Sbjct: 550 ---TGTGTLMRLLEAYGWRHDETNPEHPWYRVAEGQSDHRGNTYRGVPDEYRLDRDTFLV 606 Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256 DEA ++L E + +T +LN E + + R Sbjct: 607 VDEAGMMDQDQALALLRVADETGARL--TLVGDTMQLNAVGRGGVMQLAERYTGNVVAMR 664 Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILGQF--------PQQEVNNF--IPHNYIEEA- 305 V + R + + G+ + I ++E Sbjct: 665 DVHRFKDPDYAAYTIRLRERTPANAERLAGELFDRGMVRHWDSDEATVNAIAAAWMEHPD 724 Query: 306 ------MSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQ 358 +R+A + A + D AG+ GD+ G I ++ Sbjct: 725 TTISTVTNRQADEVNRAIQRLRLD-AGQLGDERCASMIDGQEIHV-----GDIVMTRRN 777 >gi|113476152|ref|YP_722213.1| PhoH-like protein [Trichodesmium erythraeum IMS101] gi|110167200|gb|ABG51740.1| PhoH-like protein [Trichodesmium erythraeum IMS101] Length = 317 Score = 40.3 bits (92), Expect = 0.49, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 48/182 (26%), Gaps = 25/182 (13%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAIS--------AGRGIGKTTLNAWMMLWLISTRP 106 Q + + + AI G GKT L A + + + Sbjct: 97 QQDVLAKTRRGLEIRAKTFRQRKYVQAIRRHDMTFCVGPAGTGKTFLGAIIAVKALLDNE 156 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 +I + + L Q ++ + Y L + Sbjct: 157 YERLILTRPA------------VEAGEKLGFLPGDLQQKINPYLRPLYDALY--ELIEPE 202 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226 K T+ + E P ++ + V DEA T K + T L I+ Sbjct: 203 KVNTLMEKGVIEVAPLAYMRGRTLNNSFVILDEAQNTTPAQMKMV---LTRLGFRSKMIV 259 Query: 227 TS 228 T Sbjct: 260 TG 261 >gi|326429449|gb|EGD75019.1| hypothetical protein PTSG_07244 [Salpingoeca sp. ATCC 50818] Length = 2864 Score = 40.3 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 19/175 (10%), Positives = 52/175 (29%), Gaps = 12/175 (6%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 ++ + + ++ G+GKT + A +M P ++ +A ++ Sbjct: 24 SIAERSYQFSMTKQCLLKNTLVTLPTGLGKTFIAAVVMYNFYRWYPTGKVVFMAPTK--- 80 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 V++ + F+ + + +G L + + + + +T + Sbjct: 81 -----PLVAQQVQACFRIMGFDREDVCE-MTGNKRPALRKKLWHQKRVFFLTAEVLQNDL 134 Query: 181 PDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 + + DEA + +++ I S T Sbjct: 135 RRGSCP--AKAFVCLVADEAHRALGNHAYCNVVEVLCSHTERLRIIGLSATPGDT 187 >gi|293609631|ref|ZP_06691933.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828083|gb|EFF86446.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 247 Score = 40.3 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 33/134 (24%), Gaps = 3/134 (2%) Query: 29 KNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGI 88 K+F P K +++ P Q + V + + G Sbjct: 61 KHFAGAMIPERHKNAGFRNYNTPLPGQKNALTQTANFAKKIVK---GEVENLVMVGSTGT 117 Query: 89 GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148 GKT L L++ I ++ + L + L L Sbjct: 118 GKTHLACATARTLLAKGNYARYITSEELAQRIMKAWDKDTKDQSEQLVIYEFTTYDLLIL 177 Query: 149 HPSGWYAELLEQSM 162 G + + Sbjct: 178 DEYGLHDREKRLEL 191 >gi|206603136|gb|EDZ39616.1| Protein of unknown function [Leptospirillum sp. Group II '5-way CG'] Length = 292 Score = 40.3 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 57/184 (30%), Gaps = 11/184 (5%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRG-IGKTTLNAWMMLWLISTRPGMSIICI 113 Q E + + + S+P ++++G+G +GKT + A + T ++ Sbjct: 4 QAEGLRNRESLLAAVEKKSSPPRI-ISVTSGKGGVGKTNVTANLAYAFSETFGKKVLVLD 62 Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173 A+ + L+ +W F+ +SLS A + + T Sbjct: 63 ADMGLGNMDVLFNLRPRWTLR---DFLFDNRSLSDVLVEGPAGIRILPAASGVEEMTALS 119 Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233 + + F + D +G + + F + ++T Sbjct: 120 PEQNLKLISAFDQLEAD-FDILLIDTGAGISENVL-----TFNLASQETLIVVTPEPTSR 173 Query: 234 NGWF 237 F Sbjct: 174 TDAF 177 >gi|157418347|gb|ABV54900.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|302669090|ref|YP_003832915.1| helicase [Butyrivibrio proteoclasticus B316] gi|302397430|gb|ADL36333.1| helicase [Butyrivibrio proteoclasticus B316] Length = 559 Score = 40.3 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 61/233 (26%), Gaps = 19/233 (8%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 + +EAV ++ N +CA+ G GKT L + + + +++ + + Sbjct: 4 DILEAVRNRTKEDLKNKLSLFNRCAVPRCTGFGKTWLLSEIA------QEYDTVLYLYPA 57 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 E + K W A E +D + T Sbjct: 58 E---------IIKKTAMHAIDETWEIEDEDESEAEEKKAIYDELGYELDYHNIRFMTYT- 107 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW 236 R D + DEA + K+ + N I + T Sbjct: 108 KLARMDKKQIKELPLYSLIIMDEAHRLGGELTKTRALWLMYYQKNSHIIGATATPERMDA 167 Query: 237 FYDIFNIPLEDWKRYQIDTRTV--EGIDSGFHEGIISRYGLDSDVARIEILGQ 287 F I +Q +GI + S + GQ Sbjct: 168 FDVIAEFFRG-ICVFQYTLHDAIQDGIIKMPIYIYCTYDIETSFKQAARLTGQ 219 >gi|259496217|gb|ACW82883.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|219120234|ref|XP_002180860.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217407576|gb|EEC47512.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 1051 Score = 40.3 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 28/188 (14%), Positives = 55/188 (29%), Gaps = 16/188 (8%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + + C S A++A RG GK+ + L + +I A Sbjct: 269 QAKALLVFLEACSEKTLKST-----VAMTAARGRGKSA-AMGLCLAGAISLGYSTICVTA 322 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 L +++ + + L L ++ + SG ++ + + + + Sbjct: 323 PEPENL-VSVFDFLCRGLKALKYQEHMDYSVTYNSASGREQTKCITAINVH-RSHRQVIQ 380 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 D F V DEA+ P + + + F T N Sbjct: 381 YVDPAETDKFTSA-----EIVAIDEAAAIP---LPVVRALMSHPDRLTFLSSTINGYEGT 432 Query: 235 GWFYDIFN 242 G + Sbjct: 433 GRALRGRH 440 >gi|145413592|gb|AAW51409.2| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIIREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822 >gi|312215389|emb|CBX95341.1| hypothetical protein [Leptosphaeria maculans] Length = 1323 Score = 40.3 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 52/157 (33%), Gaps = 12/157 (7%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 ++ G+GKT + A +ML I+ +A ++ + + A ++ +P Sbjct: 367 NLLVALPTGLGKTFIAATIMLNWYRWTVDSQIVFVAPTKPLVAQQVQACFK--IAGIPRS 424 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + G L + + + +T +T + + P + + D Sbjct: 425 ATTMLT-------GNVQTGLRAEEWKEKRVFFMTPQTLQNDLKSGYADP--KKIVLLVVD 475 Query: 199 EASGTPDIINKS-ILGFFTELNPNRFWIMTSNTRRLN 234 EA I+ F N + + + T N Sbjct: 476 EAHRATGGYAYVEIVSFLRRFNDSFRVLALTATPGAN 512 >gi|263613171|gb|ACY70767.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEASAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|239840462|gb|ACS32036.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|261196434|ref|XP_002624620.1| ATP-dependent DNA helicase MPH1 [Ajellomyces dermatitidis SLH14081] gi|239595865|gb|EEQ78446.1| ATP-dependent DNA helicase MPH1 [Ajellomyces dermatitidis SLH14081] gi|239609438|gb|EEQ86425.1| ATP-dependent DNA helicase MPH1 [Ajellomyces dermatitidis ER-3] gi|327357011|gb|EGE85868.1| ATP-dependent DNA helicase MPH1 [Ajellomyces dermatitidis ATCC 18188] Length = 1145 Score = 40.3 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 21/159 (13%), Positives = 48/159 (30%), Gaps = 16/159 (10%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 ++ G+GKT + A +ML II +A ++ + + A ++ +P Sbjct: 342 NLLVALPTGLGKTFIAATVMLNWFRWTTDAQIIFVAPTKPLVSQQVAACFG--IAGIPRS 399 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT--HGMAVF 196 + G + + + +T +T + H + + Sbjct: 400 QTVMLT-------GSTVPAIRAEEWQSKRVFFMTPQTL----VNDLKSGHADPKRIVLLV 448 Query: 197 NDEASGTPDIINKS-ILGFFTELNPNRFWIMTSNTRRLN 234 DEA + + N + + + T Sbjct: 449 VDEAHRATGSYAYVEAVKLLQKYNTSFRVLALTATPGST 487 >gi|228541467|gb|ACQ44479.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070216|gb|ACL98990.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|197310720|gb|ACH61715.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|187610219|gb|ACD13423.1| polyprotein [Dengue virus 3] gi|204305617|gb|ACH99667.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|187610207|gb|ACD13417.1| polyprotein [Dengue virus 3] Length = 3391 Score = 40.3 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|158851664|gb|ABW82033.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|110431934|gb|ABG73599.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|50347097|gb|AAT75224.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|78222516|ref|YP_384263.1| PhoH-like protein [Geobacter metallireducens GS-15] gi|78193771|gb|ABB31538.1| PhoH-like protein [Geobacter metallireducens GS-15] Length = 439 Score = 40.3 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 20/154 (12%), Positives = 45/154 (29%), Gaps = 10/154 (6%) Query: 87 GIGKTTLN-AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 G GKT L A + ++ ++ + + P W + Sbjct: 255 GTGKTLLAIAAGLHKTAEENVFNRLLVSRPVFPMGRDLGFLPGDIEEKLAP---WMQPIF 311 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 ++ E + + + E P T++ + + DEA Sbjct: 312 DNVELLLSGHEAEK---RHSKGYKELMAMGIMEIEPLTYIRGRSIPNQFMIVDEAQNLTP 368 Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239 K+I T ++T + +++ + D Sbjct: 369 HEIKTI---ITRAGEGTKIVLTGDPYQIDNPYVD 399 >gi|130437|sp|P27915|POLG_DEN3P RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 gi|323469|gb|AAA99437.1| unnamed protein product [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 22/185 (11%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + + LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEAMKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|316983461|gb|ADU76220.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|300675515|gb|ADK26427.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|225691028|gb|ACO06202.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|289209652|ref|YP_003461718.1| type III restriction protein res subunit [Thioalkalivibrio sp. K90mix] gi|288945283|gb|ADC72982.1| type III restriction protein res subunit [Thioalkalivibrio sp. K90mix] Length = 1066 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 63/187 (33%), Gaps = 33/187 (17%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-- 108 P+ +Q E +E + S ++ + A G GKT + A+ + Sbjct: 336 PYAFQQEILEDIRRERRSGIDRHL-------VIAATGTGKTMIAAFDYRRFAREQADKGR 388 Query: 109 -SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 S++ IA+ E L+ + + + +L + ++ PS + Sbjct: 389 PSLLFIAHREEILRQAM----ASFRQVLQDHEFGDVLVGGARPSQ-------------DR 431 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227 H T +++ D H + V DEA + + I + P +T Sbjct: 432 HLFCTVASWNARDLDRLDPEHFDY---VVLDEAHHSSAGSYQRI---LEHVRPKCLLGLT 485 Query: 228 SNTRRLN 234 + R + Sbjct: 486 ATPERTD 492 >gi|221070429|gb|ACL99092.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070400|gb|ACL99078.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070224|gb|ACL98994.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|209976606|gb|ACJ04219.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|209976536|gb|ACJ04182.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|204305603|gb|ACH99660.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|197310732|gb|ACH61721.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|197310678|gb|ACH61690.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|196015823|ref|XP_002117767.1| hypothetical protein TRIADDRAFT_51100 [Trichoplax adhaerens] gi|190579652|gb|EDV19743.1| hypothetical protein TRIADDRAFT_51100 [Trichoplax adhaerens] Length = 2140 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 31/255 (12%), Positives = 61/255 (23%), Gaps = 40/255 (15%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + A G GKT + + L++T+ + + ++ + +W+ R Sbjct: 1345 NVFVGAPTGSGKTICAEFAITRLLNTQNDGKCVYVTPFQSLAEKLYI----EWMERFEKR 1400 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + L+ S L ++ I + ++R D Sbjct: 1401 LGKTVNILTGEISIDIKRLSTGNIIISTPDKWDILSRRWKQRKAVLK------VNLFLID 1454 Query: 199 EASGTPDIINKSILGFF-------TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY 251 EA I SI +++ IM S+ + + Sbjct: 1455 EAHLIGGEIGPSIEIICSRMRYISSQVEDPIRIIMLSSPIANASDLAQWLGVSSSCLFNF 1514 Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311 + R I G FI I + Sbjct: 1515 HPNVRPTPLELH--------------------IQGFHTTHSPTRFIT--MIRPTYNTILK 1552 Query: 312 DDLYAPLIMGCDIAG 326 P I+ + Sbjct: 1553 YSPSKPCIIYV-PSR 1566 >gi|187610159|gb|ACD13393.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|180165015|gb|ACB87133.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|169635127|gb|ACA58339.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|169635117|gb|ACA58334.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|169143976|gb|ACA48862.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|169143918|gb|ACA48833.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|158851704|gb|ABW82053.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|158851698|gb|ABW82050.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|158851690|gb|ABW82046.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|158851632|gb|ABW82017.1| polyprotein [Dengue virus 3] gi|158851634|gb|ABW82018.1| polyprotein [Dengue virus 3] gi|158851644|gb|ABW82023.1| polyprotein [Dengue virus 3] gi|158851652|gb|ABW82027.1| polyprotein [Dengue virus 3] gi|158851654|gb|ABW82028.1| polyprotein [Dengue virus 3] gi|158851656|gb|ABW82029.1| polyprotein [Dengue virus 3] gi|158851660|gb|ABW82031.1| polyprotein [Dengue virus 3] gi|158851662|gb|ABW82032.1| polyprotein [Dengue virus 3] gi|158851666|gb|ABW82034.1| polyprotein [Dengue virus 3] gi|158851668|gb|ABW82035.1| polyprotein [Dengue virus 3] gi|158851672|gb|ABW82037.1| polyprotein [Dengue virus 3] gi|158851678|gb|ABW82040.1| polyprotein [Dengue virus 3] gi|158851680|gb|ABW82041.1| polyprotein [Dengue virus 3] gi|158851682|gb|ABW82042.1| polyprotein [Dengue virus 3] gi|158851686|gb|ABW82044.1| polyprotein [Dengue virus 3] gi|158851688|gb|ABW82045.1| polyprotein [Dengue virus 3] gi|158851696|gb|ABW82049.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|84998946|ref|XP_954194.1| DEAD-box helicase [Theileria annulata] gi|65305192|emb|CAI73517.1| DEAD-box helicase, putative [Theileria annulata] Length = 1925 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 19/143 (13%), Positives = 36/143 (25%), Gaps = 7/143 (4%) Query: 80 CAISAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 ++A G GKT L A + L+ + P + IA + W L + Sbjct: 1149 LVVAAPTGSGKT-LVAELGLFRLFDKHPDKIAVYIAPLKALAHER----FKDWCKKLHFK 1203 Query: 139 HWFEMQSLSLHPSGWYAEL-LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 ++ + + E+ T + T + Sbjct: 1204 KILQLTGDTSSNNLDNQLYKFERDELDRYDIVITTPEKWDGISRHWRRKKLVTKVALIIL 1263 Query: 198 DEASGTPDIINKSILGFFTELNP 220 DE + I + Sbjct: 1264 DELHLLGESRGAIIESIISRQYT 1286 >gi|325420568|gb|ADZ13189.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|316983479|gb|ADU76229.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|316983477|gb|ADU76228.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|316983473|gb|ADU76226.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|316983469|gb|ADU76224.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|316983463|gb|ADU76221.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|316983457|gb|ADU76218.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|316983433|gb|ADU76206.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|316983411|gb|ADU76195.1| polyprotein [Dengue virus 3] gi|316983455|gb|ADU76217.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|300675555|gb|ADK26445.1| polyprotein [Dengue virus 3] gi|316983447|gb|ADU76213.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|300675545|gb|ADK26440.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|300675541|gb|ADK26438.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|300675533|gb|ADK26436.1| polyprotein [Dengue virus 3] Length = 3389 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|300675507|gb|ADK26423.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|298388365|gb|ADI80662.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|298388363|gb|ADI80661.1| polyprotein [Dengue virus 3] gi|300675503|gb|ADK26421.1| polyprotein [Dengue virus 3] gi|300675511|gb|ADK26425.1| polyprotein [Dengue virus 3] gi|300675513|gb|ADK26426.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|298388355|gb|ADI80657.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|298388353|gb|ADI80656.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|297623886|ref|YP_003705320.1| CRISPR-associated helicase Cas3 [Truepera radiovictrix DSM 17093] gi|297165066|gb|ADI14777.1| CRISPR-associated helicase Cas3 [Truepera radiovictrix DSM 17093] Length = 772 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 24/181 (13%), Positives = 47/181 (25%), Gaps = 15/181 (8%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 E P + + P F+ + G GKT + L Sbjct: 229 EDGKDPQP--INALRREMYASALGNAALPPGFFRLTM--PTGGGKTLTSLAFALEHARQH 284 Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 +I T + + + L + +L + E + + Sbjct: 285 GLRRVIYAVP-FTTIIDQTAKVFREVLERCDFKVLEHHSNLEVKEPKEGEENQTTAPDLA 343 Query: 166 SKHY----------TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 ++++ + T R HN G + DEA P + + L Sbjct: 344 TENWDAPVIVTTTVRLFQETLFGTRTAQLRRLHNVSGSVIVLDEAQTLPANLLQPTLDAL 403 Query: 216 T 216 + Sbjct: 404 S 404 >gi|281324821|gb|ADA60766.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|281324819|gb|ADA60765.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|281324815|gb|ADA60763.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|263613522|gb|ACY70777.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|263613379|gb|ACY70773.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|263613346|gb|ACY70772.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|263613097|gb|ACY70765.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|263612343|gb|ACY70743.1| polyprotein [Dengue virus 3] gi|263612751|gb|ACY70755.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|259500459|gb|ACW83006.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|259500457|gb|ACW83005.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|259500453|gb|ACW83003.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|259500451|gb|ACW83002.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|259500449|gb|ACW83001.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|259500447|gb|ACW83000.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|259500445|gb|ACW82999.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|259496321|gb|ACW82935.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|259496203|gb|ACW82876.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|254939504|gb|AAB69126.2| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|239840470|gb|ACS32040.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|239840454|gb|ACS32032.1| polyprotein [Dengue virus 3] gi|281324813|gb|ADA60762.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|239840448|gb|ACS32029.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|239840398|gb|ACS32004.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|239840388|gb|ACS31999.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|239840386|gb|ACS31998.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|239840384|gb|ACS31997.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|239840382|gb|ACS31996.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|239840380|gb|ACS31995.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|228543174|gb|ACQ44530.1| polyprotein [Dengue virus 3] gi|239840378|gb|ACS31994.1| polyprotein [Dengue virus 3] gi|298388357|gb|ADI80658.1| polyprotein [Dengue virus 3] gi|298388361|gb|ADI80660.1| polyprotein [Dengue virus 3] gi|300675525|gb|ADK26432.1| polyprotein [Dengue virus 3] gi|300675547|gb|ADK26441.1| polyprotein [Dengue virus 3] gi|300675549|gb|ADK26442.1| polyprotein [Dengue virus 3] gi|300675557|gb|ADK26446.1| polyprotein [Dengue virus 3] gi|310002702|gb|ADO97106.1| polyprotein [Dengue virus 3] gi|310002704|gb|ADO97107.1| polyprotein [Dengue virus 3] gi|310002706|gb|ADO97108.1| polyprotein [Dengue virus 3] gi|310002708|gb|ADO97109.1| polyprotein [Dengue virus 3] gi|316983431|gb|ADU76205.1| polyprotein [Dengue virus 3] gi|316983453|gb|ADU76216.1| polyprotein [Dengue virus 3] gi|316983467|gb|ADU76223.1| polyprotein [Dengue virus 3] gi|316983471|gb|ADU76225.1| polyprotein [Dengue virus 3] gi|316983475|gb|ADU76227.1| polyprotein [Dengue virus 3] gi|316983483|gb|ADU76231.1| polyprotein [Dengue virus 3] gi|316983485|gb|ADU76232.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|228543145|gb|ACQ44529.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|228542631|gb|ACQ44513.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|228542539|gb|ACQ44510.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|228542510|gb|ACQ44509.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|228542482|gb|ACQ44508.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|228542456|gb|ACQ44507.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|228542259|gb|ACQ44503.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|228542226|gb|ACQ44502.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|228542195|gb|ACQ44501.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|228542062|gb|ACQ44498.1| polyprotein [Dengue virus 3] gi|259496323|gb|ACW82936.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|228542016|gb|ACQ44497.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|228541988|gb|ACQ44496.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|228541662|gb|ACQ44485.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|228541597|gb|ACQ44483.1| polyprotein [Dengue virus 3] gi|259500455|gb|ACW83004.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|228541565|gb|ACQ44482.1| polyprotein [Dengue virus 3] gi|281324817|gb|ADA60764.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|228541534|gb|ACQ44481.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|228541501|gb|ACQ44480.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|228538467|gb|ACQ44387.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|228538430|gb|ACQ44386.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|228538395|gb|ACQ44385.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|228538361|gb|ACQ44384.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|228538328|gb|ACQ44383.1| polyprotein [Dengue virus 3] gi|239840446|gb|ACS32028.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|228538287|gb|ACQ44382.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|228535530|gb|ACQ44322.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|228535528|gb|ACQ44321.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|225691054|gb|ACO06215.1| polyprotein [Dengue virus 3] gi|259496175|gb|ACW82862.1| polyprotein [Dengue virus 3] gi|259496177|gb|ACW82863.1| polyprotein [Dengue virus 3] gi|259496205|gb|ACW82877.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|225691052|gb|ACO06214.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|225691050|gb|ACO06213.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|225691024|gb|ACO06200.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|225690994|gb|ACO06185.1| polyprotein [Dengue virus 3] gi|316983419|gb|ADU76199.1| polyprotein [Dengue virus 3] gi|316983423|gb|ADU76201.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|225690992|gb|ACO06184.1| polyprotein [Dengue virus 3] gi|239840400|gb|ACS32005.1| polyprotein [Dengue virus 3] gi|316983421|gb|ADU76200.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|225690972|gb|ACO06174.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|225690968|gb|ACO06172.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|225690962|gb|ACO06169.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|225690942|gb|ACO06159.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|225690902|gb|ACO06139.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|187479900|gb|AAV36569.2| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070475|gb|ACL99113.1| polyprotein [Dengue virus 3] gi|221070477|gb|ACL99114.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070472|gb|ACL99112.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070454|gb|ACL99104.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070439|gb|ACL99097.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070433|gb|ACL99094.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070427|gb|ACL99091.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070424|gb|ACL99090.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070420|gb|ACL99088.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070418|gb|ACL99087.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070416|gb|ACL99086.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070414|gb|ACL99085.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070408|gb|ACL99082.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070404|gb|ACL99080.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070402|gb|ACL99079.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070398|gb|ACL99077.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070396|gb|ACL99076.1| polyprotein [Dengue virus 3] gi|228542572|gb|ACQ44511.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070391|gb|ACL99074.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070389|gb|ACL99073.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070387|gb|ACL99072.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070380|gb|ACL99069.1| polyprotein [Dengue virus 3] gi|221070385|gb|ACL99071.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070378|gb|ACL99068.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070376|gb|ACL99067.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070374|gb|ACL99066.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070371|gb|ACL99065.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070369|gb|ACL99064.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070365|gb|ACL99062.1| polyprotein [Dengue virus 3] gi|221070367|gb|ACL99063.1| polyprotein [Dengue virus 3] gi|228542605|gb|ACQ44512.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070362|gb|ACL99061.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070353|gb|ACL99057.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070349|gb|ACL99055.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070347|gb|ACL99054.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070345|gb|ACL99053.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070343|gb|ACL99052.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070339|gb|ACL99050.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070337|gb|ACL99049.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070335|gb|ACL99048.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070329|gb|ACL99045.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070327|gb|ACL99044.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070321|gb|ACL99041.1| polyprotein [Dengue virus 3] gi|221070323|gb|ACL99042.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070304|gb|ACL99033.1| polyprotein [Dengue virus 3] gi|221070306|gb|ACL99034.1| polyprotein [Dengue virus 3] gi|221070310|gb|ACL99036.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070264|gb|ACL99014.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070238|gb|ACL99001.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070236|gb|ACL99000.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070234|gb|ACL98999.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070232|gb|ACL98998.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070230|gb|ACL98997.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070228|gb|ACL98996.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070226|gb|ACL98995.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070222|gb|ACL98993.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070220|gb|ACL98992.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070218|gb|ACL98991.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070214|gb|ACL98989.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070212|gb|ACL98988.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070210|gb|ACL98987.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070206|gb|ACL98985.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|217302387|gb|ACK28187.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|157061325|gb|ABV03585.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|209976604|gb|ACJ04218.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|209976550|gb|ACJ04189.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|209976548|gb|ACJ04188.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|209976542|gb|ACJ04185.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|209976538|gb|ACJ04183.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|209976532|gb|ACJ04180.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|209976530|gb|ACJ04179.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|209976528|gb|ACJ04178.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|204305634|gb|ACH99677.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|204305632|gb|ACH99676.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|204305621|gb|ACH99669.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|204305615|gb|ACH99666.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|204305607|gb|ACH99662.1| polyprotein [Dengue virus 3] gi|221070325|gb|ACL99043.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|204305599|gb|ACH99658.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|204305597|gb|ACH99657.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|204305593|gb|ACH99655.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|204305591|gb|ACH99654.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|204305587|gb|ACH99652.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|197310730|gb|ACH61720.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|197310726|gb|ACH61718.1| polyprotein [Dengue virus 3] gi|197310728|gb|ACH61719.1| polyprotein [Dengue virus 3] gi|204305589|gb|ACH99653.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|197310722|gb|ACH61716.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|197310666|gb|ACH61684.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|197310664|gb|ACH61683.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|195471459|ref|XP_002088022.1| GE18344 [Drosophila yakuba] gi|194174123|gb|EDW87734.1| GE18344 [Drosophila yakuba] Length = 429 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 25/204 (12%), Positives = 52/204 (25%), Gaps = 9/204 (4%) Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182 LW E L ++ F + + AEL ++ S + Sbjct: 59 RLWHEAKDELHLMLSPGAFGELETEMRKTNVTAELFISNVQELIDSEEAANLKASRDGSF 118 Query: 183 TFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242 + ++ + + DE + +S + I S G + Sbjct: 119 GWTKYNSLAEIYAWLDEILAAYPSVTESFEVGQSYEGRTIRGIKISYKSNNPGVLIESNI 178 Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYI 302 E E + S + ++ + D + +L H Sbjct: 179 HAREWITSATATWLINEFLTST--DELVRDLAENHDWYIVPVL-----NVDGLVYTHE-- 229 Query: 303 EEAMSREAIDDLYAPLIMGCDIAG 326 ++ M R+ +G D Sbjct: 230 KDRMWRKTRQPSDISSCIGVDPNR 253 >gi|190161853|gb|ACE63545.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|190161851|gb|ACE63544.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|190161831|gb|ACE63534.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|190161827|gb|ACE63532.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|190161821|gb|ACE63529.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|190161819|gb|ACE63528.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|187610209|gb|ACD13418.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|187610193|gb|ACD13410.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|187610183|gb|ACD13405.1| polyprotein [Dengue virus 3] gi|209976546|gb|ACJ04187.1| polyprotein [Dengue virus 3] gi|209976608|gb|ACJ04220.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|187610179|gb|ACD13403.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|187610177|gb|ACD13402.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|187610161|gb|ACD13394.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|187610157|gb|ACD13392.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|180165050|gb|ACB87134.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|170665952|gb|ACB29499.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|170665950|gb|ACB29498.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|170665948|gb|ACB29497.1| polyprotein [Dengue virus 3] gi|187610039|gb|ACD13331.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|170665946|gb|ACB29496.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|169635133|gb|ACA58342.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|169635129|gb|ACA58340.1| polyprotein [Dengue virus 3] gi|169635131|gb|ACA58341.1| polyprotein [Dengue virus 3] gi|225690912|gb|ACO06144.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|169635121|gb|ACA58336.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|169635119|gb|ACA58335.1| polyprotein [Dengue virus 3] gi|204305585|gb|ACH99651.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|169635105|gb|ACA58328.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|169635103|gb|ACA58327.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|169635099|gb|ACA58325.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|169635095|gb|ACA58323.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|169635093|gb|ACA58322.1| polyprotein [Dengue virus 3] gi|221070312|gb|ACL99037.1| polyprotein [Dengue virus 3] gi|221070314|gb|ACL99038.1| polyprotein [Dengue virus 3] gi|221070316|gb|ACL99039.1| polyprotein [Dengue virus 3] gi|221070318|gb|ACL99040.1| polyprotein [Dengue virus 3] gi|221070333|gb|ACL99047.1| polyprotein [Dengue virus 3] gi|224383588|gb|ACN42696.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|169635091|gb|ACA58321.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|169635089|gb|ACA58320.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|169144014|gb|ACA48881.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|169144012|gb|ACA48880.1| polyprotein [Dengue virus 3] gi|169635101|gb|ACA58326.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|169144010|gb|ACA48879.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|169143978|gb|ACA48863.1| polyprotein [Dengue virus 3] gi|221070208|gb|ACL98986.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|169143912|gb|ACA48830.1| polyprotein [Dengue virus 3] gi|204305595|gb|ACH99656.1| polyprotein [Dengue virus 3] gi|204305613|gb|ACH99665.1| polyprotein [Dengue virus 3] gi|204305619|gb|ACH99668.1| polyprotein [Dengue virus 3] gi|225690910|gb|ACO06143.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|169143902|gb|ACA48825.1| polyprotein [Dengue virus 3] gi|169143904|gb|ACA48826.1| polyprotein [Dengue virus 3] gi|190161825|gb|ACE63531.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|169143896|gb|ACA48822.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|158851720|gb|ABW82061.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|158851706|gb|ABW82054.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|158851700|gb|ABW82051.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|158851692|gb|ABW82047.1| polyprotein [Dengue virus 3] gi|158851694|gb|ABW82048.1| polyprotein [Dengue virus 3] gi|158851708|gb|ABW82055.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|158851676|gb|ABW82039.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|158851674|gb|ABW82038.1| polyprotein [Dengue virus 3] gi|158851684|gb|ABW82043.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|158851648|gb|ABW82025.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|158851646|gb|ABW82024.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|158851640|gb|ABW82021.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|158851638|gb|ABW82020.1| polyprotein [Dengue virus 3] gi|158851642|gb|ABW82022.1| polyprotein [Dengue virus 3] gi|158851650|gb|ABW82026.1| polyprotein [Dengue virus 3] gi|158851670|gb|ABW82036.1| polyprotein [Dengue virus 3] gi|158851718|gb|ABW82060.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|158851636|gb|ABW82019.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|157418345|gb|ABV54899.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|157418341|gb|ABV54897.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|157418339|gb|ABV54896.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|165972365|ref|NP_001107132.1| Fanconi anemia, complementation group M [Danio rerio] gi|126843130|gb|ABO27624.1| Fanconi anemia M [Danio rerio] Length = 1761 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/238 (9%), Positives = 52/238 (21%), Gaps = 43/238 (18%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +QL EA + + G+GKT + + +M P I+ Sbjct: 78 REYQLRVCEA-------------ALLQNTLVCLPTGLGKTFIASVLMYNYYRWFPAGKIV 124 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 +A ++ + ++ ++ + + L S+ Sbjct: 125 FMAPTKPLVAQ----QIEACYRVMGIPQEHTAELTGSTAAPQRRSLW------SSRRVFF 174 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 D H E L + + SN Sbjct: 175 LTPPDRCVVIDEAHKATGNHAYCQVIRELRKQTPQFRVLALSATPGGDVKAVQQVISN-- 232 Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF----HEGIISRYGLDSDVARIEIL 285 ++ + + + E ++ G + L Sbjct: 233 --------------LLISHIELRSEDSPDVQTHVHQRSLEKMVVPLGESLTHYQTRYL 276 >gi|89274866|gb|ABD65878.1| polyprotein [Dengue virus 3] gi|89274868|gb|ABD65879.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|50657546|gb|AAT79552.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|163644369|ref|YP_001621843.1| polyprotein [Dengue virus 3] gi|81988680|sp|Q6YMS4|POLG_DEN3S RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 gi|37543956|gb|AAM51537.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|50080846|gb|AAT69740.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|329936128|ref|ZP_08285927.1| helicase-like protein [Streptomyces griseoaurantiacus M045] gi|329304446|gb|EGG48325.1| helicase-like protein [Streptomyces griseoaurantiacus M045] Length = 1056 Score = 40.3 bits (92), Expect = 0.52, Method: Composition-based stats. Identities = 25/173 (14%), Positives = 39/173 (22%), Gaps = 28/173 (16%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + + + I + G GKT A L PG ++ Sbjct: 18 QKARFREWAGSPFNTRSPVPEQGSRGTIVSATGSGKTITAAACAL---ECFPGARVLVTV 74 Query: 115 NSETQLKNTLWA----------------EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 + L T A E L+ L R L+L + Sbjct: 75 PTLDLLVQTAQAWRLVGHRSPMVAVCSLENDAVLNSLGVRTTTNPIQLALWAGHGPVVVF 134 Query: 159 EQSMGIDSKHYTITCRTYSEER---------PDTFVGPHNTHGMAVFNDEASG 202 + + + R + G DEA G Sbjct: 135 ATYASLVDREDIDAPEGQRKVRGPLEAALAGGERLYGQRMAGFDLAIVDEAHG 187 >gi|322490223|emb|CBZ25484.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 1062 Score = 40.3 bits (92), Expect = 0.52, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 44/125 (35%), Gaps = 10/125 (8%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 C ++AGRG GK+ M + + +I+C A + + TL+ + L L +R Sbjct: 287 CVVTAGRGRGKSAAL-GMTIAGAIAQGYSNIMCTAPTPENV-QTLFEFAIRGLKELGYRE 344 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + ++L + + ++ + + + DE Sbjct: 345 RTDFEALQGVSEEFAKCFIRINVFREHRQTVQFVSATDTTK--------FAQAELCVIDE 396 Query: 200 ASGTP 204 A+ P Sbjct: 397 AAALP 401 >gi|301120732|ref|XP_002908093.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4] gi|262103124|gb|EEY61176.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4] Length = 564 Score = 40.3 bits (92), Expect = 0.52, Method: Composition-based stats. Identities = 37/316 (11%), Positives = 77/316 (24%), Gaps = 59/316 (18%) Query: 81 AISAGR--------GIGKTTLNAWMMLWLI-------STRPGMSIICIANSETQLKNTLW 125 +++GR G GKT + L I PG ++ +A + + Sbjct: 181 ILASGRDIIGIAETGSGKTLAFSIPGLIHIAAQPEVSHKHPGPRMLVVAPTRELAMQSS- 239 Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185 A +S+ + + H + + + Sbjct: 240 AVISEAGKKCGLKSICIYGGVPKHTQKKALRD---------GVHVVVATPGRLKDLVEER 290 Query: 186 GPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL 245 + + V DEA D + + I + Sbjct: 291 SCNLSKVTFVVLDEADRMLDEGFEKDIRAIIGSTHPERQIAMFSATWPQSIQKLAHEFLN 350 Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV-----------ARIEILGQFPQQEVN 294 + K + ++ DS +L ++E + Sbjct: 351 DPVKVTIGSDELAASHNVTQIVEVVEDRARDSRAHALLQKYHASRKNRILLFVLYKKEAD 410 Query: 295 NF-----------IPHNYIEEAMSREAIDDLYA----PLIMGCDIAGEGGDKTVVVFRRG 339 I + R + + PL++ D+A G D Sbjct: 411 RVERMLHQRGWNCIAIHGDRNQQQRSEAVEQFKSGEVPLLIATDVAARGLD--------I 462 Query: 340 NIIEHIFDWSAKLIQE 355 +E++ ++S L E Sbjct: 463 PGVEYVMNYSFPLTIE 478 >gi|115949446|ref|XP_001194731.1| PREDICTED: similar to RNA helicase [Strongylocentrotus purpuratus] Length = 1419 Score = 40.3 bits (92), Expect = 0.52, Method: Composition-based stats. Identities = 24/221 (10%), Positives = 56/221 (25%), Gaps = 29/221 (13%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 + F + +R+Q + SN I A G+GK+ +L Sbjct: 869 MFSFDEFNRFQKVVFNKLYTETDSN----------VLIGAPGGMGKSVATELAILGAFRA 918 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 RP ++ IA + L+ +++ +L + F + Sbjct: 919 RPDTKVVYIAPLRSLLRRRFRVWRARFGDILGKKV-FMLNGDVSSDVNTVKRADIILATS 977 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT------EL 218 + + + + D+ ++ T Sbjct: 978 EKWDAVC----RRGQNTED--------VSLLVLDQLQFLASDCGPALEAIVTRMKITSRS 1025 Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 + S + + ++ ++ D R V Sbjct: 1026 TSKVRIVALSTPMSNSIEVAEWLDVKEVGSYNFKADERPVP 1066 >gi|115730743|ref|XP_795220.2| PREDICTED: similar to RNA helicase, partial [Strongylocentrotus purpuratus] Length = 1398 Score = 40.3 bits (92), Expect = 0.52, Method: Composition-based stats. Identities = 24/221 (10%), Positives = 56/221 (25%), Gaps = 29/221 (13%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 + F + +R+Q + SN I A G+GK+ +L Sbjct: 869 MFSFDEFNRFQKVVFNKLYTETDSN----------VLIGAPGGMGKSVATELAILGAFRA 918 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 RP ++ IA + L+ +++ +L + F + Sbjct: 919 RPDTKVVYIAPLRSLLRRRFRVWRARFGDILGKKV-FMLNGDVSSDVNTVKRADIILATS 977 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT------EL 218 + + + + D+ ++ T Sbjct: 978 EKWDAVC----RRGQNTED--------VSLLVLDQLQFLASDCGPALEAIVTRMKITSRS 1025 Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 + S + + ++ ++ D R V Sbjct: 1026 TSKVRIVALSTPMSNSIEVAEWLDVKEVGSYNFKADERPVP 1066 >gi|83571766|ref|YP_425018.1| putative large terminase subunit [Enterobacteria phage K1E] gi|83308217|emb|CAJ29449.1| gp40A protein [Enterobacteria phage K1E] Length = 405 Score = 40.3 bits (92), Expect = 0.52, Method: Composition-based stats. Identities = 32/246 (13%), Positives = 72/246 (29%), Gaps = 19/246 (7%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 ++ I A RGI KTTL+A ++ I P I+ ++ + + + E++ W+ Sbjct: 62 FYGHKYRL-IEAPRGIAKTTLSAIYTVFRIIHEPHKRIMVVSQNAKRAE-----EIAGWV 115 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 + F L +G A + + + + G Sbjct: 116 VKIFRGLDFLEFMLPDIYAGDRASVKAFEIHYTLRGSDKSPSVSCYSIEAGMQGARADII 175 Query: 193 MAVFNDEASGTPDIINKSILGFFTELNPNRFW----IMTSNTRRLNGWFYDIFNIPLE-D 247 +A + +++L T+ + I + +N + ++ Sbjct: 176 LADDVESMQNARTAAGRALLEELTKEFESINQFGDIIYLGTPQNVNSIYNNLPARGYSVR 235 Query: 248 WKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL--------GQFPQQEVNNFIPH 299 + + E F +I + D+ R + + I Sbjct: 236 IWTARYPSVEQEQCYGDFLAPMIVQDMKDNPALRSGYGLDGNSGAPCAPEMYDDDVLIEK 295 Query: 300 NYIEEA 305 + A Sbjct: 296 EISQGA 301 >gi|260592885|ref|ZP_05858343.1| type I restriction-modification system, R subunit [Prevotella veroralis F0319] gi|260535174|gb|EEX17791.1| type I restriction-modification system, R subunit [Prevotella veroralis F0319] Length = 770 Score = 40.3 bits (92), Expect = 0.52, Method: Composition-based stats. Identities = 45/310 (14%), Positives = 97/310 (31%), Gaps = 49/310 (15%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 + +P +Q +E + + I G GKT ++ L ++ Sbjct: 164 YTYEPRYYQRIAVERTVEAIAKGRD-------RVLIVMATGTGKTITAFQIIHRLKASGT 216 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 I+ +A+ + T+ + P + + S + + + + Sbjct: 217 KKKILYLADRNILIDQTMVQDFK------PFKKVMTKIQGATIDSAYEVHMALYHQLVSN 270 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA---SGTPDIINKSILGFFTELNPNRF 223 + E D F T + DE S D + +L +F+ Sbjct: 271 E----------EGVEDPFKQVQPTFFDLIIVDECHRGSAKDDSAWRKVLEYFSTATQ--- 317 Query: 224 WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIE 283 MT+ + NG +D +GI D +A Sbjct: 318 IGMTATPKAENG--------------ANNLDYFGEPVFTYSLLQGI-----QDGFLAPYR 358 Query: 284 ILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIE 343 + + ++ F P + ++ + R+ + LY +G DIA + +V R +++ Sbjct: 359 VTNSYISIDLQGFKPSDDEKDLLGRDIVQRLYERKDIGRDIAFTKR-REIVAKRITKMLK 417 Query: 344 HIFDWSAKLI 353 I + ++ Sbjct: 418 QIGRMTKTIV 427 >gi|254496379|ref|ZP_05109261.1| CRISPR-associated helicase Cas3 [Legionella drancourtii LLAP12] gi|254354397|gb|EET13050.1| CRISPR-associated helicase Cas3 [Legionella drancourtii LLAP12] Length = 814 Score = 40.3 bits (92), Expect = 0.52, Method: Composition-based stats. Identities = 30/245 (12%), Positives = 60/245 (24%), Gaps = 19/245 (7%) Query: 63 DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN------- 115 + + + + ++ G GKT + L II Sbjct: 313 AEILQNCRDAALTSSKIYTLTVPTGGGKTLSSMAFALEHALKHNKRRIIVAIPYTSIIEQ 372 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 + Q + V + S L L W A ++ + + Sbjct: 373 TADQYRKVFGNAVIEHHSNLDPEKETAKS--RLSSENWDAPIIVTTNVQLLESLF----- 425 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK---SILGFFTELNPNRFWIMTSNTRR 232 HN + DEA P + +L T + T+ Sbjct: 426 --AAHTSRCRKLHNLVNSVIIIDEAQLLPPQFLQPVLDVLRLLTTHYGVTLVLSTATQPA 483 Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292 L+ + L + + V + I + ++ E L Q + Sbjct: 484 LSTIKNSFGHTVLRGFTDVHEIIKDVPALYRQLVRVKIEKPTNLNERVSWESLSQRLCEH 543 Query: 293 VNNFI 297 + + Sbjct: 544 ESVLV 548 >gi|242036511|ref|XP_002465650.1| hypothetical protein SORBIDRAFT_01g042980 [Sorghum bicolor] gi|241919504|gb|EER92648.1| hypothetical protein SORBIDRAFT_01g042980 [Sorghum bicolor] Length = 2084 Score = 40.3 bits (92), Expect = 0.52, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 48/157 (30%), Gaps = 21/157 (13%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L FS + Q + + + + A G GKT ML L +T Sbjct: 1278 LYRFSHFNPIQTQAFHVLYHTDN-----------NVLLGAPTGSGKTISAELAMLHLFNT 1326 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 P M ++ IA + ++ + + W L + + + +G + L + Sbjct: 1327 HPDMKVVYIAPLKAIVRERM----NDWRKRLVTQ----LGKKMVEMTGDFTPDLMALLSA 1378 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 D T + + + + DE Sbjct: 1379 D--IIISTPEKWDGISRNWHSRSYVMKVGLMILDEIH 1413 >gi|239840450|gb|ACS32030.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.52, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|228538252|gb|ACQ44381.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.52, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|225690956|gb|ACO06166.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.52, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|225690950|gb|ACO06163.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.52, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|225690944|gb|ACO06160.1| polyprotein [Dengue virus 3] gi|228541693|gb|ACQ44486.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.52, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070452|gb|ACL99103.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.52, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|260792384|ref|XP_002591195.1| hypothetical protein BRAFLDRAFT_105397 [Branchiostoma floridae] gi|229276398|gb|EEN47206.1| hypothetical protein BRAFLDRAFT_105397 [Branchiostoma floridae] Length = 757 Score = 40.3 bits (92), Expect = 0.52, Method: Composition-based stats. Identities = 17/170 (10%), Positives = 45/170 (26%), Gaps = 28/170 (16%) Query: 85 GRGIGKTTLNAWMMLWLISTRP--GMSIICIANSETQLKNTLWAEVSKWLSMLPHRH--- 139 R GK++ + ++ ++ P G+ + A++ + + L + Sbjct: 78 PRRCGKSSFFSTILTLILVACPYAGLKALYTAHTLSLVSEMYRRIADNITRPLEAFNAYQ 137 Query: 140 ------------------WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC-----RTY 176 F ++ + + + +E D + T Sbjct: 138 LHQYQMRKERNGGISTSGDFYFKAEARLQTHGHIIRVEFFKKNDDGVLKLPGDKMLVNTL 197 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226 + V DEA P + ++ L + + + Sbjct: 198 DCKLCIRTNSLRGLTFNMVIVDEAHFVPGNVYETFLPWTATDDGAMIMLS 247 >gi|157418343|gb|ABV54898.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.52, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|81988679|sp|Q6YMS3|POLG_DEN3M RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 gi|37543958|gb|AAM51538.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.52, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|316983481|gb|ADU76230.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|315637257|ref|ZP_07892476.1| phage protein [Arcobacter butzleri JV22] gi|315478421|gb|EFU69135.1| phage protein [Arcobacter butzleri JV22] Length = 574 Score = 40.3 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 56/193 (29%), Gaps = 24/193 (12%) Query: 22 AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81 + F F +FP + Q E +E + + ++ P K A Sbjct: 69 EKQKSDFHYFRETYFP------HYYSLEGKSKLQDE-LEIIY---YKIIDQYKPMGLKFA 118 Query: 82 ISAGRGIGKTTLNAWMM-LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 I+A RG GK+T + +W I I +++ + + A ++ + Sbjct: 119 IAAPRGFGKSTDVSIAFPIWCIVNNYKHFITLFSDAIELAETLVEAIKAELEENERLKQD 178 Query: 141 F--EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP--------DTFVGPHN- 189 F + G + + + RP + + Sbjct: 179 FSNACGIGKVWKIGEIVTNNNIKVKAYGSGKRVRGVKHGTFRPDLAIIDDLENDTNVRSR 238 Query: 190 --THGMAVFNDEA 200 + + DEA Sbjct: 239 TQRDKLEDWLDEA 251 >gi|310002710|gb|ADO97110.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|300675543|gb|ADK26439.1| polyprotein [Dengue virus 3] gi|300675553|gb|ADK26444.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|300675505|gb|ADK26422.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|298388359|gb|ADI80659.1| polyprotein [Dengue virus 3] gi|300675509|gb|ADK26424.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|291233977|ref|XP_002736929.1| PREDICTED: nat10 protein-like [Saccoglossus kowalevskii] Length = 1024 Score = 40.3 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 20/150 (13%), Positives = 45/150 (30%), Gaps = 15/150 (10%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + + S A++A RG GK+ + + +I A Sbjct: 260 QAKAVLKFVEAISEKTLRST-----VAMTAARGRGKSAAL-GLAMSAAVAFSYSNIFVTA 313 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 S L+ ++ V K L ++ + + + + ++ ++ + + Sbjct: 314 PSPENLRT-MFDFVFKGFDALEYQEHLDYELVQSTNPEFNKAVVRVNIFREHRQTIQYIH 372 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + V DEA+ P Sbjct: 373 PSDAHKLGQAE--------LVVIDEAAAIP 394 >gi|228541630|gb|ACQ44484.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|225691026|gb|ACO06201.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070351|gb|ACL99056.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|254227443|ref|ZP_04920875.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|262396292|ref|YP_003288145.1| hypothetical protein VEA_000995 [Vibrio sp. Ex25] gi|151940055|gb|EDN58881.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|262339886|gb|ACY53680.1| hypothetical protein VEA_000995 [Vibrio sp. Ex25] Length = 675 Score = 40.3 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 34/248 (13%), Positives = 64/248 (25%), Gaps = 40/248 (16%) Query: 40 IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFK--CAISAGRGIGKTTLNAWM 97 + KPL + + E H S + K ++A RG GKT+ Sbjct: 133 EQDKPLPTAPDIKQAEKESHYTEQEHAISLIEKVVTGHRKRPLILTADRGRGKTSALGIA 192 Query: 98 MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 + + I+ A S ++ L +LP+ L Sbjct: 193 CA-NLLQQKPFRILITAPSIKAVEPVYQH----ALRLLPNAQRIRKDRLE---------- 237 Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217 + + + + + DEA+ P + Sbjct: 238 --------------SGQGAIQFIAPDELLSSRPECDLLLVDEAAAIP-------VPMLKS 276 Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277 + + ++ S T F I DW + Q + L+S Sbjct: 277 ITEHYHRLVFSTTIHGYEGCGRGFTIKFVDWLQKQRSGM--KTWHMTQPIRWSMNDALES 334 Query: 278 DVARIEIL 285 + +L Sbjct: 335 WLYDAFLL 342 >gi|316983459|gb|ADU76219.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|316983445|gb|ADU76212.1| polyprotein [Dengue virus 3] Length = 3351 Score = 40.3 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1631 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1684 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1685 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1726 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1727 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1783 Query: 264 GFHEG 268 + Sbjct: 1784 EWITD 1788 >gi|316983441|gb|ADU76210.1| polyprotein [Dengue virus 3] Length = 3315 Score = 40.3 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1595 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1648 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1649 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1690 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1691 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1747 Query: 264 GFHEG 268 + Sbjct: 1748 EWITD 1752 >gi|300675551|gb|ADK26443.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|157418353|gb|ABV54903.1| polyprotein [Dengue virus 3] Length = 3297 Score = 40.3 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1577 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1630 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1631 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1672 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1673 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1729 Query: 264 GFHEG 268 + Sbjct: 1730 EWITD 1734 >gi|28199891|ref|NP_780205.1| hypothetical protein PD2030 [Xylella fastidiosa Temecula1] gi|28058012|gb|AAO29854.1| conserved hypothetical protein [Xylella fastidiosa Temecula1] Length = 616 Score = 40.3 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 44/154 (28%), Gaps = 24/154 (15%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT + A +L + P I N+ LK ++ + + E Sbjct: 113 GSGKTIVLALKAAYLHTQYPDWRIAVTFNT-RSLKAQFQRLIT---NFCIEQSGEEPDWT 168 Query: 147 SLH-PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH-------------- 191 + + W A G+ ++ T T+ + R +F + + Sbjct: 169 KIRVINAWGAPGGAARDGLYYEYCCATGATFFDFRRASFTFVNEENAFNGACRNALEDAA 228 Query: 192 -----GMAVFNDEASGTPDIINKSILGFFTELNP 220 + DEA P K T Sbjct: 229 DAAGLYDVILLDEAQDLPPSFLKLCYAMLTPEKR 262 >gi|46124913|ref|XP_387010.1| hypothetical protein FG06834.1 [Gibberella zeae PH-1] Length = 873 Score = 40.3 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 41/173 (23%), Gaps = 19/173 (10%) Query: 40 IKGKPLEHFSQPH----RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95 + P WQ ++ A G GK+ + Sbjct: 102 ELDLSHPSYDLPRQMIYPWQKACLKGPG---------LLTGEKNLVYCAPTGGGKSLVAD 152 Query: 96 WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM-QSLSLHPSGWY 154 +ML I G + + L E +WL + F ++ W Sbjct: 153 VLMLKRILQEKGTKALLVLP-----YVALVQEKVRWLRSVVQGLRFAPETAIDDDKRIWR 207 Query: 155 AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207 E ++ + R + + AV DE D Sbjct: 208 RRADENAVRVVGFFGGGKVRATWADFDIAIDDCSISKLSAVVLDELHMIDDDH 260 >gi|71899962|ref|ZP_00682108.1| conserved hypothetical protein [Xylella fastidiosa Ann-1] gi|71730249|gb|EAO32334.1| conserved hypothetical protein [Xylella fastidiosa Ann-1] Length = 614 Score = 40.3 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 44/154 (28%), Gaps = 24/154 (15%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT + A +L + P I N+ LK ++ + + E Sbjct: 111 GSGKTIVLALKAAYLHTQYPDWRIAVTFNT-RSLKAQFQRLIT---NFCIEQSGEEPDWT 166 Query: 147 SLH-PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH-------------- 191 + + W A G+ ++ T T+ + R +F + + Sbjct: 167 KIRIINAWGAPGGAARDGLYYEYCCATGATFFDFRRASFTFVNEENAFNGACRNALEDAA 226 Query: 192 -----GMAVFNDEASGTPDIINKSILGFFTELNP 220 + DEA P K T Sbjct: 227 DAAGLYDVILLDEAQDLPPSFLKLCYAMLTPEKR 260 >gi|37525956|ref|NP_929300.1| hypothetical protein plu2039 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785385|emb|CAE14332.1| phosphate starvation-inducible protein [Photorhabdus luminescens subsp. laumondii TTO1] Length = 262 Score = 40.3 bits (92), Expect = 0.54, Method: Composition-based stats. Identities = 24/141 (17%), Positives = 40/141 (28%), Gaps = 13/141 (9%) Query: 76 TIFKCAISAGR-GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 K I++G G GKT ++A M + + II V + Sbjct: 71 NYKKLIIASGEAGCGKTFISAAMAADALINKEIDRIIVTRP------------VLQADED 118 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 L + + + Y LL++ ++ E P ++ Sbjct: 119 LGFLPGDMAEKFAPYFRPVYDVLLKRMGASFLQYCLRPEIGKVEIAPFAYMRGRTFENAF 178 Query: 195 VFNDEASGTPDIINKSILGFF 215 V DEA K L Sbjct: 179 VILDEAQNVTVNQMKMFLTRL 199 >gi|154248608|ref|YP_001419566.1| type III restriction protein res subunit [Xanthobacter autotrophicus Py2] gi|154162693|gb|ABS69909.1| type III restriction protein res subunit [Xanthobacter autotrophicus Py2] Length = 999 Score = 40.3 bits (92), Expect = 0.54, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 57/186 (30%), Gaps = 24/186 (12%) Query: 60 EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI----------STRPGMS 109 + + +NP +F+ A+ G GKTT+ A ++ W +R + Sbjct: 139 RRLRDELEQHNKGANPALFRLAMKMATGSGKTTVMAMLIAWQAVNAARKATKDFSRAFLI 198 Query: 110 IICIANSETQLKNTLWAEVSKWL--------SMLPHRHWFE-----MQSLSLHPSGWYAE 156 I +L+ L +E + MLP E + + + Sbjct: 199 IAPGITIRDRLRVLLPSEPDNYYETREIVPPEMLPDIRRAEIVITNYHAFQHRETLALPK 258 Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFF 215 + + ++ T T +E N + V NDEA + G Sbjct: 259 VARSFLQGNAPEPLKTTETDAEMLERACGKLLNYDRVTVINDEAHHCYRHKVGGDAEGPL 318 Query: 216 TELNPN 221 T + Sbjct: 319 TGEDKK 324 >gi|253745031|gb|EET01146.1| U5 small nuclear ribonucleoprotein 200 kDa helicase, putative [Giardia intestinalis ATCC 50581] Length = 1568 Score = 40.3 bits (92), Expect = 0.54, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 51/197 (25%), Gaps = 17/197 (8%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTR-----PGMSIICIANSETQLKNTLWAEVSKWLS 133 ++A G GKT + W M+ L+ P I +A + ++ L S Sbjct: 225 NTLVAAPTGAGKTNIALWAMICLLHISQCQHLPVQLAIYVAPLKALVREVLSRLESSLQQ 284 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT-------YSEERPDTFVG 186 + + + A S + T S+ + F Sbjct: 285 LPNSYNAILCEYTGEESISLSAISSLLHGLHTSTTLIVLVATPEKLDVFTSKLIGEDFQL 344 Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFT----ELNPNRFWIMTSNTRRLNGWFYDIFN 242 + V DE D S++ N + S T + + Sbjct: 345 IRAR-LVLVVLDELHLIGDHTRGSVIEELVLRFHRHYQNTMLLALSATIPNTQQLAEFLH 403 Query: 243 IPLEDWKRYQIDTRTVE 259 + + R V Sbjct: 404 CAPSNTLVFDSSYRAVS 420 >gi|170061820|ref|XP_001866402.1| pre-mRNA-splicing helicase BRR2 [Culex quinquefasciatus] gi|167879899|gb|EDS43282.1| pre-mRNA-splicing helicase BRR2 [Culex quinquefasciatus] Length = 853 Score = 40.3 bits (92), Expect = 0.54, Method: Composition-based stats. Identities = 19/168 (11%), Positives = 41/168 (24%), Gaps = 21/168 (12%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L FSQ + Q + AV + + A G GKT + + +L + Sbjct: 305 LYAFSQFNPIQTQVFNAVYNNED-----------NVFVGAPTGSGKTRIAEFAVLRKLQQ 353 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 P ++ + + + + W F + + Sbjct: 354 NPHGRVLYLVSRDALAELI----FMDWHQK------FGQNLGCKVVKLTGETGTDLKLIA 403 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212 + T ++ + + DE + Sbjct: 404 KGQIIVTTADKWNILSRRWKQRKNVQNIQLFIVDELQLISGEEGPVLE 451 >gi|56698829|gb|AAW23129.1| polyprotein [Dengue virus 3] Length = 3390 Score = 40.3 bits (92), Expect = 0.54, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 47/185 (25%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F + ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNSPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221128221|ref|XP_002165482.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 2136 Score = 40.3 bits (92), Expect = 0.54, Method: Composition-based stats. Identities = 25/255 (9%), Positives = 56/255 (21%), Gaps = 40/255 (15%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 I A G GKT + +L L+ + I + ++ + + W S Sbjct: 1349 NILIGAPTGSGKTICAEFAILHLLLQHHDARCVYITSLQSLAEQV----FTDWRSK---- 1400 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 F + + + T + + + D Sbjct: 1401 --FGIMLGKNVVMLTGETSGDLKLLAKGNIIISTPDKWDVLSRRWKQRKNVQNVNLFILD 1458 Query: 199 EASGTPDIINKSIL------GFFTELNPNRF-WIMTSNTRRLNGWFYDIFNIPLEDWKRY 251 E + + + + S++ + + + + Sbjct: 1459 ELHLIGGENGPVMEVICSRMRYISSQIEKGIRIVALSSSLSNSKDIAQWLGVSTNNIFNF 1518 Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAI 311 + R V I G + I I+ A Sbjct: 1519 HPNVRPVPLELH--------------------IQGFNITHTGSRLI--AMIKPAYQSIVR 1556 Query: 312 DDLYAPLIMGCDIAG 326 P+I+ + Sbjct: 1557 LSPRKPVIVFV-PSR 1570 >gi|182680607|ref|YP_001828767.1| DNA-dependent helicase II [Xylella fastidiosa M23] gi|182630717|gb|ACB91493.1| DNA helicase II [Xylella fastidiosa M23] Length = 723 Score = 40.3 bits (92), Expect = 0.54, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 79/294 (26%), Gaps = 32/294 (10%) Query: 62 VDVHCHSNVNNSNPTIF-KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + H + N + I AG G GKT + ++WL + + + + + Sbjct: 1 MLDHLNQNQREAVAAAPGHYLILAGAGSGKTRVLTHRIVWL-------NEVNGVPTHSMM 53 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 T +K + R +++ W + + H+ + + Sbjct: 54 AVTF---TNKAAGEIQQRIDLQLRHGKRGM--WIGTFHSLAHRLLRLHWNDATLPENFQV 108 Query: 181 PDTFVGPHNTHGM---AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 D+ + ND P + + I + W Sbjct: 109 IDSDDQLRLVKRVIQSLGLNDTL--FPPKQAMWWINTQKDEGRRPEHI---QPESHDDWI 163 Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297 + YQ +D D+ +F + ++ F Sbjct: 164 ----ETQRRIYTEYQERCNRAGLVDFSELLLRAHELLRDTPALLTHYRSRFREILIDEFQ 219 Query: 298 PHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 N I+ A R +D + G D + RG +EH+ + Sbjct: 220 DTNAIQYAFVRVLANDTGHIFAV-------GDDDQAIYGWRGAKVEHVQHFLKD 266 >gi|220927525|ref|YP_002504434.1| type III restriction protein res subunit [Clostridium cellulolyticum H10] gi|219997853|gb|ACL74454.1| type III restriction protein res subunit [Clostridium cellulolyticum H10] Length = 1100 Score = 40.3 bits (92), Expect = 0.54, Method: Composition-based stats. Identities = 23/203 (11%), Positives = 51/203 (25%), Gaps = 18/203 (8%) Query: 36 FPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT-TLN 94 F + + + Q+ + A+ H N T + G GKT T+ Sbjct: 125 FSFREEDN-VTGAKGLRPPQIGALHAIAAHFAVGKNFEPAT-----VVLPTGTGKTETML 178 Query: 95 AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWY 154 + + + + I S+ L+ ++ + + Sbjct: 179 SMQVYKRLL-----RTLVIVPSDA-LRTQIYKKFLTLGVLPDLEVVPSETIGPNVTRLVT 232 Query: 155 AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH--NTHGMAVFNDEASGTPDIINKSIL 212 ++ + I + + DEA P + Sbjct: 233 GIRSKEEALAIIEKSNIIITLPKTLSASDPEALRILTEYCTDLIVDEAHHIPASQWSLVC 292 Query: 213 GFFTELNPNRFWIMTSNTRRLNG 235 F++ R T+ R + Sbjct: 293 QMFSD---KRITQFTATPFRRDN 312 >gi|71899705|ref|ZP_00681857.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1] gi|71730500|gb|EAO32579.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1] Length = 723 Score = 40.3 bits (92), Expect = 0.54, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 79/294 (26%), Gaps = 32/294 (10%) Query: 62 VDVHCHSNVNNSNPTIF-KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + H + N + I AG G GKT + ++WL + + + + + Sbjct: 1 MLDHLNQNQREAVAAAPGHYLILAGAGSGKTRVLTHRIVWL-------NEVNGVPTHSMM 53 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 T +K + R +++ W + + H+ + + Sbjct: 54 AVTF---TNKAAGEIQQRIDLQLRHGKRGM--WIGTFHSLAHRLLRLHWNDATLPENFQV 108 Query: 181 PDTFVGPHNTHGM---AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 D+ + ND P + + I + W Sbjct: 109 IDSDDQLRLVKRVIQSLGLNDTL--FPPKQAMWWINTQKDEGRRPEHI---QPESHDDWI 163 Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297 + YQ +D D+ +F + ++ F Sbjct: 164 ----ETQRRIYTEYQERCNRAGLVDFSELLLRAHELLRDTPALLTHYRSRFREILIDEFQ 219 Query: 298 PHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 N I+ A R +D + G D + RG +EH+ + Sbjct: 220 DTNAIQYAFVRVLANDTGHIFAV-------GDDDQAIYGWRGAKVEHVQHFLKD 266 >gi|71275503|ref|ZP_00651789.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Dixon] gi|71900751|ref|ZP_00682872.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1] gi|170729288|ref|YP_001774721.1| DNA-dependent helicase II [Xylella fastidiosa M12] gi|71163803|gb|EAO13519.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Dixon] gi|71729481|gb|EAO31591.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1] gi|167964081|gb|ACA11091.1| DNA helicase II [Xylella fastidiosa M12] Length = 723 Score = 40.3 bits (92), Expect = 0.54, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 79/294 (26%), Gaps = 32/294 (10%) Query: 62 VDVHCHSNVNNSNPTIF-KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + H + N + I AG G GKT + ++WL + + + + + Sbjct: 1 MLDHLNQNQREAVAAAPGHYLILAGAGSGKTRVLTHRIVWL-------NEVNGVPTHSMM 53 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 T +K + R +++ W + + H+ + + Sbjct: 54 AVTF---TNKAAGEIQQRIDLQLRHGKRGM--WIGTFHSLAHRLLRLHWNDATLPENFQV 108 Query: 181 PDTFVGPHNTHGM---AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 D+ + ND P + + I + W Sbjct: 109 IDSDDQLRLVKRVIQSLGLNDTL--FPPKQAMWWINTQKDEGRRPEHI---QPESHDDWI 163 Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297 + YQ +D D+ +F + ++ F Sbjct: 164 ----ETQRRIYTEYQERCNRAGLVDFSELLLRAHELLRDTPALLTHYRSRFREILIDEFQ 219 Query: 298 PHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 N I+ A R +D + G D + RG +EH+ + Sbjct: 220 DTNAIQYAFVRVLANDTGHIFAV-------GDDDQAIYGWRGAKVEHVQHFLKD 266 >gi|325690440|gb|EGD32443.1| prophage LambdaSa04 protein [Streptococcus sanguinis SK115] Length = 530 Score = 39.9 bits (91), Expect = 0.55, Method: Composition-based stats. Identities = 35/317 (11%), Positives = 74/317 (23%), Gaps = 53/317 (16%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ + + + + N T + + + GK+ L A + Sbjct: 48 PWQEQIVRDLFGIVKEDGNRQFLTAY---VEIPKKNGKSELAAA----IALYLLYADGEA 100 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 A + A + F++ + S + + Sbjct: 101 SAEVYGAACDRNQASIV-----------FDVAKQMVLMSRALEKRSKVMGATKRIINYSN 149 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT-- 230 Y +T H + + DE P+ +L + + T Sbjct: 150 AGFYQVLSAETG-TKHGLNVSGLVFDEIHAQPNRHLYDVLTKGSGDAREQPLFFIITTAG 208 Query: 231 RRLNGWFYDIFNIP----------------------LEDW----KRYQIDTRTVEGIDSG 264 N Y++ +DW + + I Sbjct: 209 NDKNSICYELHTKALDILKGRKKDSTFYPVVYGLSEEDDWNDEENWLKANPSLGHTIGID 268 Query: 265 FHEGIISRYGLDS---DVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLIM 320 + +V + L + V +IP + ++ + Sbjct: 269 RVREAYLNALDNPAEENVFKQLRLNIWTNSAVT-WIPEHIYDKGRQPIDVESLKGRDCYA 327 Query: 321 GCDIAGEGGDKTVVVFR 337 G D++ D T V Sbjct: 328 GLDLSST-SDITAFVLI 343 >gi|255654809|ref|ZP_05400218.1| putative ATP-dependent RNA helicase [Clostridium difficile QCD-23m63] gi|296449553|ref|ZP_06891330.1| cold-shock DEAD box protein A [Clostridium difficile NAP08] gi|296878124|ref|ZP_06902139.1| cold-shock DEAD box protein A [Clostridium difficile NAP07] gi|296261617|gb|EFH08435.1| cold-shock DEAD box protein A [Clostridium difficile NAP08] gi|296430877|gb|EFH16709.1| cold-shock DEAD box protein A [Clostridium difficile NAP07] Length = 537 Score = 39.9 bits (91), Expect = 0.55, Method: Composition-based stats. Identities = 26/238 (10%), Positives = 58/238 (24%), Gaps = 23/238 (9%) Query: 40 IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99 K F +P Q + + A+ A G GKT + +L Sbjct: 16 KKAIAEMGFEEPSPIQAQSIPAILSGKD------------VIGQAQTGTGKTAAFSIPIL 63 Query: 100 WLIS-TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 I + + + + E+ K ++ +++L ++ + Sbjct: 64 ETIDPNNRSLQAVVLCPTRELAIQVS-TEIRKL-----AKYSHGIKTLPIYGGQPIDRQI 117 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218 + + S + + + DEA D+ + + Sbjct: 118 KS---LKSGVQVVIGTPGRTIDHINRKTLKMDNVKMIILDEADEMLDMGFREDIEMILSK 174 Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLE-DWKRYQIDTRTVEGIDSGFHEGIISRYGL 275 P + G + + + TV + E S Sbjct: 175 IPEERQTTFFSATMPRGILELTKRYQKDPEHIKVVRKELTVSNTKQYYIETRSSNKLE 232 >gi|225434327|ref|XP_002266157.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297745752|emb|CBI15808.3| unnamed protein product [Vitis vinifera] Length = 568 Score = 39.9 bits (91), Expect = 0.55, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 46/166 (27%), Gaps = 24/166 (14%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGR--------GIGKTTLNAWMMLWLISTRPGMS 109 M+ + H ++ A+ +GR G GKT A M+ +P + Sbjct: 134 IMKDITFHEYTRPTFIQAQAMPVAL-SGRDLLGCAETGSGKTAAFAIPMIQHCLAQPPVR 192 Query: 110 ------IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163 + +A + E+++ + + S + EQ Sbjct: 193 RGDGPLALVLAPT---------RELAQQIEKEVKAFSRSLDSFRTAIVVGGTNISEQRSE 243 Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209 + + + + V DEA D+ + Sbjct: 244 LRAGVNIVVATPGRFIHHLQEGNTSLSRISFVVLDEADRMLDMGFE 289 >gi|126698341|ref|YP_001087238.1| putative ATP-dependent RNA helicase [Clostridium difficile 630] gi|254974380|ref|ZP_05270852.1| putative ATP-dependent RNA helicase [Clostridium difficile QCD-66c26] gi|255091773|ref|ZP_05321251.1| putative ATP-dependent RNA helicase [Clostridium difficile CIP 107932] gi|255099876|ref|ZP_05328853.1| putative ATP-dependent RNA helicase [Clostridium difficile QCD-63q42] gi|255305765|ref|ZP_05349937.1| putative ATP-dependent RNA helicase [Clostridium difficile ATCC 43255] gi|255313504|ref|ZP_05355087.1| putative ATP-dependent RNA helicase [Clostridium difficile QCD-76w55] gi|255516192|ref|ZP_05383868.1| putative ATP-dependent RNA helicase [Clostridium difficile QCD-97b34] gi|255649288|ref|ZP_05396190.1| putative ATP-dependent RNA helicase [Clostridium difficile QCD-37x79] gi|260682458|ref|YP_003213743.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196] gi|260686057|ref|YP_003217190.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291] gi|306519386|ref|ZP_07405733.1| putative ATP-dependent RNA helicase [Clostridium difficile QCD-32g58] gi|115249778|emb|CAJ67595.1| putative ATP-dependent RNA helicase [Clostridium difficile] gi|260208621|emb|CBA61352.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196] gi|260212073|emb|CBE02663.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291] Length = 537 Score = 39.9 bits (91), Expect = 0.55, Method: Composition-based stats. Identities = 26/238 (10%), Positives = 58/238 (24%), Gaps = 23/238 (9%) Query: 40 IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99 K F +P Q + + A+ A G GKT + +L Sbjct: 16 KKAIAEMGFEEPSPIQAQSIPAILSGKD------------VIGQAQTGTGKTAAFSIPIL 63 Query: 100 WLIS-TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 I + + + + E+ K ++ +++L ++ + Sbjct: 64 ETIDPNNRSLQAVVLCPTRELAIQVS-TEIRKL-----AKYSHGIKTLPIYGGQPIDRQI 117 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218 + + S + + + DEA D+ + + Sbjct: 118 KS---LKSGVQVVIGTPGRTIDHINRKTLKMDNVKMIILDEADEMLDMGFREDIEMILSK 174 Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLE-DWKRYQIDTRTVEGIDSGFHEGIISRYGL 275 P + G + + + TV + E S Sbjct: 175 IPEERQTTFFSATMPRGILELTKRYQKDPEHIKVVRKELTVSNTKQYYIETRSSNKLE 232 >gi|156548982|ref|XP_001607217.1| PREDICTED: similar to CG7922-PA [Nasonia vitripennis] Length = 1498 Score = 39.9 bits (91), Expect = 0.55, Method: Composition-based stats. Identities = 24/210 (11%), Positives = 59/210 (28%), Gaps = 15/210 (7%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + G+GKT + A +M P ++ +A ++ + ++ ++ Sbjct: 55 NTLVCLPTGLGKTFIAAVVMYNFWRWYPRGRVVFLAPTKPLVAQ----QIEACHEIMGI- 109 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 ++ +G ++ + I + T +T+ ++ + + D Sbjct: 110 ----PSEETVELTGAINQVKRKQAWIQKRVVFATPQTFQKDLQN--DIVPCQLIKCIVID 163 Query: 199 EASG-TPDIINKSILGFFTELNPNRFWIMTS-NTRRLNGWFYDIFNIP--LEDWKRYQID 254 EA I+ ++ + S ++ E R Sbjct: 164 EAHKALGKHSYCEIVRMMSDKTKFFRILALSATPGSKIDHVREVIQNLLISELELRDDSS 223 Query: 255 TRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 + E II G D + Sbjct: 224 PDITPYTNDRSMEKIIVGLGTDLTNYKDRY 253 >gi|126178399|ref|YP_001046364.1| type III restriction enzyme, res subunit [Methanoculleus marisnigri JR1] gi|125861193|gb|ABN56382.1| type III restriction enzyme, res subunit [Methanoculleus marisnigri JR1] Length = 1062 Score = 39.9 bits (91), Expect = 0.55, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 62/187 (33%), Gaps = 31/187 (16%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG--M 108 P+ +Q E +E + +K I A G GKT ++A+ + RPG Sbjct: 333 PYYYQKEILERL------KAERELHNNYKNLIVAATGTGKTVISAFDYK-SLFQRPGEYP 385 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 ++ +A+ E LK + + + +L +++ ++ P+ Sbjct: 386 RLLFVAHREEILKQS----IQVFRGVLKDQNFGDLLVGGSEPAQIEH------------- 428 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 + S + + V DE + +L ++T +T+ Sbjct: 429 --LFTSIQSLNSRNLPEITPPDYYDMVIVDEFHHAAAPSYQRLLSYYTPG---VLLGLTA 483 Query: 229 NTRRLNG 235 R + Sbjct: 484 TPERTDN 490 >gi|268534660|ref|XP_002632461.1| C. briggsae CBR-MEL-46 protein [Caenorhabditis briggsae] Length = 935 Score = 39.9 bits (91), Expect = 0.55, Method: Composition-based stats. Identities = 18/158 (11%), Positives = 42/158 (26%), Gaps = 13/158 (8%) Query: 80 CAISAGRGIGKTTLNAWMMLWLIS--TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + A G GKT + + + + + +I + E+S + Sbjct: 54 MLVQAKSGTGKTLVFSVLAVENLDLKAHYIQKVIIT-PT---------REISTQIKETVR 103 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + S++ G +L + ++ + + +H Sbjct: 104 KLTPAGARTSVYTGGIGHKLNVIDLK-KTRPQIVIGTPGRVAQLIRMGAMDISHVDFFVL 162 Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 DEA D + K + P + + Sbjct: 163 DEADKLMDEVFKPDINTIINSLPPIRQVAVFSATYPRN 200 >gi|88859352|ref|ZP_01133992.1| putative helicase [Pseudoalteromonas tunicata D2] gi|88818369|gb|EAR28184.1| putative helicase [Pseudoalteromonas tunicata D2] Length = 1050 Score = 39.9 bits (91), Expect = 0.55, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 62/185 (33%), Gaps = 28/185 (15%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P QL +E + V + FK + A G GKT ++A+ + +P Sbjct: 320 PKTHQLTILEKLS------VERTVHQRFKNLVVAATGTGKTIISAFDFKTVYDAKPNAQF 373 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + +A+ E LK S + +L + + E+ + P + Sbjct: 374 LFVAHREEILKQA----QSAYRGVLKNNQFGELWVGNYKPQSY---------------NQ 414 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 + + + + + + DE + +L +FT P +T+ Sbjct: 415 LFASIQTLNSQLDTLNLSSDYYDYIVIDEVHHVSAASYRMVLNYFT---PQILLGLTATP 471 Query: 231 RRLNG 235 R +G Sbjct: 472 ERQDG 476 >gi|170055165|ref|XP_001863460.1| pre-mRNA-splicing helicase BRR2 [Culex quinquefasciatus] gi|167875204|gb|EDS38587.1| pre-mRNA-splicing helicase BRR2 [Culex quinquefasciatus] Length = 2144 Score = 39.9 bits (91), Expect = 0.56, Method: Composition-based stats. Identities = 21/221 (9%), Positives = 48/221 (21%), Gaps = 28/221 (12%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 + F Q + Q + AV + A G GKTT+ + +L ++ Sbjct: 1324 DRFPQFNPIQTQVFNAVYNSED-----------NVFVGAPTGSGKTTIAEFAVLRMLQQN 1372 Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 P ++ + + + + W F + + Sbjct: 1373 PHGRVVYLVSRDALAELI----FMDWHQK------FGQNLGCKVVKLTGETGTDLKLIAK 1422 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN------ 219 + T + + + DE + + + Sbjct: 1423 GQIIVTTADKWDILSRRWKQRKNVQNIQLFIVDELQLIGGEEGPVLEVVCSRMRYISSQI 1482 Query: 220 -PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 I S + + R + Sbjct: 1483 EKQIRIIALSASLSDARDVAQWLGCNANATFNFHPSVRPIP 1523 >gi|158851702|gb|ABW82052.1| polyprotein [Dengue virus 3] Length = 3390 Score = 39.9 bits (91), Expect = 0.56, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 47/185 (25%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P ++ + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVSNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ K + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEEKDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|317121963|ref|YP_004101966.1| helicase [Thermaerobacter marianensis DSM 12885] gi|315591943|gb|ADU51239.1| helicase domain protein [Thermaerobacter marianensis DSM 12885] Length = 524 Score = 39.9 bits (91), Expect = 0.57, Method: Composition-based stats. Identities = 31/257 (12%), Positives = 75/257 (29%), Gaps = 42/257 (16%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 WQ + ++ + + + ++ G+GKT + L++ ++ Sbjct: 11 RLWQHQGVQYLGYQVEAARRVVEDLHGRAILADEVGLGKTVEAGLVTRELMARHGIRRVL 70 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + + VS+W + + + + AE + S+ + + Sbjct: 71 VLVPT---------PLVSQWAAEFRDKFALTLAVNPRGAALRRAERIVISIDLAKRD--- 118 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT- 230 + V DEA + + F L ++++ Sbjct: 119 ----------EPRRVLQARPWDLVIVDEAHKLKNRNTQV-HAFVRGLQARYLLLLSATPL 167 Query: 231 -RRLNGWFY-------DIFNIPLEDWKRY---QIDTRTVEGIDSGFHEGIISRYGLDSDV 279 L + D+F E W+ + + + + + + +I Sbjct: 168 QNDLTELYSLVSLVRPDLFGSYSEFWRNFLLDKRTPKDPQQLKQVLAQVMIRNR------ 221 Query: 280 ARIEILGQFPQQEVNNF 296 R E+ FP +EV Sbjct: 222 -RAELDLPFPAREVELV 237 >gi|158851716|gb|ABW82059.1| polyprotein [Dengue virus 3] Length = 3390 Score = 39.9 bits (91), Expect = 0.57, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822 >gi|145413604|gb|AAW51416.2| polyprotein [Dengue virus 3] Length = 3390 Score = 39.9 bits (91), Expect = 0.57, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822 >gi|145413608|gb|AAW51419.2| polyprotein [Dengue virus 3] Length = 3390 Score = 39.9 bits (91), Expect = 0.57, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822 >gi|145413602|gb|AAW51415.2| polyprotein [Dengue virus 3] Length = 3390 Score = 39.9 bits (91), Expect = 0.57, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822 >gi|145413594|gb|AAW51410.2| polyprotein [Dengue virus 3] Length = 3390 Score = 39.9 bits (91), Expect = 0.57, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822 >gi|118443735|ref|YP_878084.1| helicase [Clostridium novyi NT] gi|118134191|gb|ABK61235.1| helicase, putative [Clostridium novyi NT] Length = 964 Score = 39.9 bits (91), Expect = 0.57, Method: Composition-based stats. Identities = 33/228 (14%), Positives = 63/228 (27%), Gaps = 36/228 (15%) Query: 10 KLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFS--QPHRWQLEFMEAVDVHCH 67 LE + E + S+ NF+ K +++ +P+ Q + ++ Sbjct: 179 YLELWESTSFVDDEFLNSYNNFIQEIRKTEKKTLEFKNYEIIKPNYMQNRAISNLNRLRL 238 Query: 68 SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127 + K + A G GKT ++A+ ++ ++ + + E LK Sbjct: 239 QGED-------KALVVAATGTGKTYMSAFDVI----NYNPKRMLFLVHREDILK------ 281 Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187 E L + D + S Sbjct: 282 ------------GAEATFRKLVKNKNKTTGFLTGTRKDLGSDYLFSTIQSMNN--NLESF 327 Query: 188 HNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 V DEA K ++ +F P MT+ R + Sbjct: 328 KADEFEYVIIDEAHHAASPSYKKVMNYF---KPKFILGMTATPERCDN 372 >gi|57544894|gb|AAW51412.1| polyprotein [Dengue virus 3] Length = 3390 Score = 39.9 bits (91), Expect = 0.57, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822 >gi|57544906|gb|AAW51418.1| polyprotein [Dengue virus 3] gi|145413599|gb|AAW51413.2| polyprotein [Dengue virus 3] Length = 3390 Score = 39.9 bits (91), Expect = 0.57, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822 >gi|57544904|gb|AAW51417.1| polyprotein [Dengue virus 3] Length = 3390 Score = 39.9 bits (91), Expect = 0.57, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822 >gi|57544886|gb|AAW51408.1| polyprotein [Dengue virus 3] Length = 3390 Score = 39.9 bits (91), Expect = 0.57, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822 >gi|51850381|dbj|BAD42418.1| polyprotein [Dengue virus 3] Length = 3390 Score = 39.9 bits (91), Expect = 0.57, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822 >gi|51850385|dbj|BAD42420.1| polyprotein [Dengue virus 3] Length = 3390 Score = 39.9 bits (91), Expect = 0.57, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822 >gi|51850383|dbj|BAD42419.1| polyprotein [Dengue virus 3] Length = 3390 Score = 39.9 bits (91), Expect = 0.57, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822 >gi|316983465|gb|ADU76222.1| polyprotein [Dengue virus 3] Length = 3390 Score = 39.9 bits (91), Expect = 0.57, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTTRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|304436852|ref|ZP_07396817.1| phage terminase large subunit [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370167|gb|EFM23827.1| phage terminase large subunit [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 605 Score = 39.9 bits (91), Expect = 0.57, Method: Composition-based stats. Identities = 25/231 (10%), Positives = 57/231 (24%), Gaps = 24/231 (10%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 AG +GKT M+ + ++ P ++ + SE K T + + + P Sbjct: 79 CAGTQLGKTAAEQNMIGYAVAQDPAP-MLVVYPSEKLAKFTSEKRLQPMIKLSPA----- 132 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 + + E + + + I ++ + +F DE Sbjct: 133 -------LADKFDERGSKDLELSLGGMYIALVGA-----NSPSELSSRPVRYIFFDEIDK 180 Query: 203 TPDIINKSILGF-FTELNPNRF----WIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257 P F + S G + + ++ Y Sbjct: 181 FPKWTGAEAGPLELAAERTKTFYNRKIVKVSTPTLKTGNIWQGWETADIQYRYYVPCPHC 240 Query: 258 VEGIDSGFHE-GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307 E F + ++ + ++N + Sbjct: 241 GEMQTLEFRQIKWTDGADETEARMAAYYECKYCHETIDNRHKPAMLRMGEW 291 >gi|145413596|gb|AAW51411.2| polyprotein [Dengue virus 3] Length = 3390 Score = 39.9 bits (91), Expect = 0.57, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPVRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822 >gi|10803640|ref|NP_046038.1| hypothetical protein VNG7093 [Halobacterium sp. NRC-1] gi|16120082|ref|NP_395670.1| DNA repair protein [Halobacterium sp. NRC-1] gi|169237281|ref|YP_001690487.1| RAD25-type DNA repair helicase [Halobacterium salinarum R1] gi|2822371|gb|AAC82877.1| unknown [Halobacterium sp. NRC-1] gi|10584184|gb|AAG20805.1| DNA repair protein [Halobacterium sp. NRC-1] gi|167728347|emb|CAP15151.1| RAD25-type DNA repair helicase [Halobacterium salinarum R1] Length = 469 Score = 39.9 bits (91), Expect = 0.57, Method: Composition-based stats. Identities = 22/253 (8%), Positives = 59/253 (23%), Gaps = 42/253 (16%) Query: 38 WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97 + +P +Q + A H ++ G GKT L Sbjct: 71 YRDLDLTPAVAIEPRDYQQAALAAWTDHDRRG-----------SVVLPTGSGKTFLA--- 116 Query: 98 MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 +S + + + +++W + L + + Sbjct: 117 --VQAIADASVSTLVVVPTID--------LLNQWHATLTN-------------AFGDQLP 153 Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217 E + H + + ++ + + DE P + I Sbjct: 154 HEIGVLGGGSHNVTDITVTTYDSAYRYINEYGDQFGLLVVDEVHHLPAPTYQQIPEMTIA 213 Query: 218 LNPNRFWIMTSNTRRLNGWFYD-----IFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISR 272 T + D ++ +++ + + ++ Sbjct: 214 PYRLGLTATYERTDGEHNVLEDLIGPVVYEENVDELAGEYLSEYETIHLKVDLTPEERNQ 273 Query: 273 YGLDSDVARIEIL 285 Y + + R + Sbjct: 274 YDDEYQIYRDYLD 286 >gi|95930869|ref|ZP_01313600.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684] gi|95133111|gb|EAT14779.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684] Length = 463 Score = 39.9 bits (91), Expect = 0.57, Method: Composition-based stats. Identities = 27/210 (12%), Positives = 53/210 (25%), Gaps = 20/210 (9%) Query: 82 ISAGR--------GIGKTTLNAWMMLWLI-STRPGMSIICIANSETQLKNTLWAEVSKWL 132 I AGR G GKT +L + R + + + + +L + + E+ K Sbjct: 38 ILAGRDVIGQGKTGSGKTAAFGLGLLQKLNVKRFHVQALVLCPT-RELADQVAKEIRKLA 96 Query: 133 SMLPH-RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191 + + + + P E + I E + Sbjct: 97 RTIHNIKVLTLCGGMPFGPQLGSLEH---------GAHIIVGTPGRIEEHVRKGALKLDN 147 Query: 192 GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY 251 + DEA ++ + L + P + + + Sbjct: 148 LTLLVLDEADRMLEMGFQEALDAIIDQTPQTRQTLLFSATFPRQIESIAGRVMKTPVMVQ 207 Query: 252 QIDTRTVEGIDSGFHEGIISRYGLDSDVAR 281 T I F+E + R Sbjct: 208 VEATHDSAVITQHFYEVADDTADRQQALRR 237 >gi|289187585|gb|ADC92353.1| polyprotein [Dengue virus 3] Length = 3390 Score = 39.9 bits (91), Expect = 0.58, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822 >gi|242826326|ref|XP_002488618.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC 10500] gi|218712436|gb|EED11862.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC 10500] Length = 1845 Score = 39.9 bits (91), Expect = 0.58, Method: Composition-based stats. Identities = 26/227 (11%), Positives = 65/227 (28%), Gaps = 25/227 (11%) Query: 26 LSFKNF-VMRFFPW-----GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFK 79 LS +F + P+ G P H +P WQ E ++ +D Sbjct: 751 LSPPDFQLFYAGPYIDRSMGSTRDPRIHDFEPDMWQREVLDQIDA------------RGS 798 Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 + A GKT ++ + + ++ ++ +A ++ + +++ + Sbjct: 799 LFVVAPTSAGKTFISFYAIKQILEDDNDGILVYVAPTKALVNQVAAEIEARFSKSFNNMP 858 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 ++H + + + + + + ++ + + DE Sbjct: 859 --GKSVWAIHTRDYRINNPTGCQVLITVPHILQIMLLAPSNAKSW----SPRIKRIIFDE 912 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246 + I L I S T F + + Sbjct: 913 VHCIGQAEDGVIWEQLLLL-APCPIIALSATVGNPEEFRQWLEMAQK 958 >gi|195039987|ref|XP_001990982.1| GH12329 [Drosophila grimshawi] gi|193900740|gb|EDV99606.1| GH12329 [Drosophila grimshawi] Length = 1010 Score = 39.9 bits (91), Expect = 0.58, Method: Composition-based stats. Identities = 27/207 (13%), Positives = 58/207 (28%), Gaps = 22/207 (10%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 +++A RG GK+ + + ++I + L L+ V K L ++ Sbjct: 275 ISLTAARGRGKSAAL-GLSIAAAVAFGYVNIYVTSPHPENLIT-LFEFVLKGFDGLEYQE 332 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + ++ ++ +S+ + + DE Sbjct: 333 HADYTIIRSTNPDYKKAIIRINITRNSRQTIQYIAPSDTHLLNAAD--------LLLIDE 384 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 A+ P L ++ M S Y+ L Q+ Sbjct: 385 AAAIP-------LPLVKKMIGPYLIFMASTING-----YEGTGRSLSLKLISQLQKENNA 432 Query: 260 GIDSGFHEGIISRYGLDSDVARIEILG 286 E I + D + I +L Sbjct: 433 RPPLKLDESIRYQSNDDIERWLINLLC 459 >gi|195019547|ref|XP_001985005.1| GH14740 [Drosophila grimshawi] gi|193898487|gb|EDV97353.1| GH14740 [Drosophila grimshawi] Length = 1007 Score = 39.9 bits (91), Expect = 0.58, Method: Composition-based stats. Identities = 27/207 (13%), Positives = 58/207 (28%), Gaps = 22/207 (10%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 +++A RG GK+ + + ++I + L L+ V K L ++ Sbjct: 275 ISLTAARGRGKSAAL-GLSIAAAVAFGYVNIYVTSPHPENLIT-LFEFVLKGFDGLEYQE 332 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + ++ ++ +S+ + + DE Sbjct: 333 HADYTIIRSTNPDYKKAIIRINITRNSRQTIQYIAPSDTHLLNAAD--------LLLIDE 384 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 A+ P L ++ M S Y+ L Q+ Sbjct: 385 AAAIP-------LPLVKKMIGPYLIFMASTING-----YEGTGRSLSLKLISQLQKENNA 432 Query: 260 GIDSGFHEGIISRYGLDSDVARIEILG 286 E I + D + I +L Sbjct: 433 RPPLKLDESIRYQSNDDIERWLINLLC 459 >gi|158851712|gb|ABW82057.1| polyprotein [Dengue virus 3] Length = 3390 Score = 39.9 bits (91), Expect = 0.58, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822 >gi|116494138|ref|YP_805872.1| hypothetical protein LSEI_0585 [Lactobacillus casei ATCC 334] gi|116104288|gb|ABJ69430.1| hypothetical protein LSEI_0585 [Lactobacillus casei ATCC 334] Length = 808 Score = 39.9 bits (91), Expect = 0.58, Method: Composition-based stats. Identities = 31/206 (15%), Positives = 67/206 (32%), Gaps = 11/206 (5%) Query: 4 LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63 +K+E L ++L + + N P IKG +Q + + +D Sbjct: 3 KKKVMRKIELPLVDLLENKRKIDLLSNEKPFIIPEYIKGNLKHQL---RPYQNQALVNLD 59 Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 + + ++ G GKT + A ++L+L + + + + N+ + T Sbjct: 60 WTQRQPLADYQYNQLLFNMATG--SGKTDVLAALILYLYTEFTYHNFLFVVNTNAVVAKT 117 Query: 124 LWAEV-----SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 + S H ++ S+ E + + + + ++ Sbjct: 118 YDNLLNTASPKYLFSQPLTIHGQRIELRSVTRFPSTPEDGVIYLRLATIQALTNELSETK 177 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTP 204 E T+ H + V DEA Sbjct: 178 ENSLTYDDFKA-HKLVVLADEAHHFS 202 >gi|57544898|gb|AAW51414.1| polyprotein [Dengue virus 3] Length = 3390 Score = 39.9 bits (91), Expect = 0.58, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822 >gi|311235518|gb|ADP88371.1| metal dependent phosphohydrolase [Desulfovibrio vulgaris RCH1] Length = 745 Score = 39.9 bits (91), Expect = 0.58, Method: Composition-based stats. Identities = 23/164 (14%), Positives = 46/164 (28%), Gaps = 7/164 (4%) Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 + +H + P +F + G GKT + L T +I + Sbjct: 235 IRKTVLHDCRARASETPGLFSLTV--PTGGGKTLSSMAFALDHAVTHGLRRVIYAIPFTS 292 Query: 119 QLKN--TLWAEVSKWLSMLPHRHWFEMQSLSL---HPSGWYAELLEQSMGIDSKHYTITC 173 ++ ++++V ++L H + + + + Sbjct: 293 IIEQNAKVFSDVFGQDNVLEHHCNYRSKDEPEEQGYDKWRGLAAENWDAPVVVTTNVQFF 352 Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217 + RP HN + DEA P + L E Sbjct: 353 ESLFSNRPSRCRKLHNIARSVIVLDEAQAIPTEYLEPCLYALKE 396 >gi|120586832|ref|YP_961177.1| metal dependent phosphohydrolase [Desulfovibrio vulgaris subsp. vulgaris DP4] gi|120564246|gb|ABM29989.1| CRISPR-associated helicase, Cas3 family [Desulfovibrio vulgaris DP4] Length = 745 Score = 39.9 bits (91), Expect = 0.58, Method: Composition-based stats. Identities = 23/164 (14%), Positives = 46/164 (28%), Gaps = 7/164 (4%) Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 + +H + P +F + G GKT + L T +I + Sbjct: 235 IRKTVLHDCRARASETPGLFSLTV--PTGGGKTLSSMAFALDHAVTHGLRRVIYAIPFTS 292 Query: 119 QLKN--TLWAEVSKWLSMLPHRHWFEMQSLSL---HPSGWYAELLEQSMGIDSKHYTITC 173 ++ ++++V ++L H + + + + Sbjct: 293 IIEQNAKVFSDVFGQDNVLEHHCNYRSKDEPEEQGYDKWRGLAAENWDAPVVVTTNVQFF 352 Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217 + RP HN + DEA P + L E Sbjct: 353 ESLFSNRPSRCRKLHNIARSVIVLDEAQAIPTEYLEPCLYALKE 396 >gi|46562132|ref|YP_009169.1| CRISPR-associated helicase Cas3 domain-containing protein [Desulfovibrio vulgaris str. Hildenborough] gi|46447669|gb|AAS94335.1| CRISPR-associated helicase Cas3 domain protein [Desulfovibrio vulgaris str. Hildenborough] Length = 702 Score = 39.9 bits (91), Expect = 0.58, Method: Composition-based stats. Identities = 23/164 (14%), Positives = 46/164 (28%), Gaps = 7/164 (4%) Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 + +H + P +F + G GKT + L T +I + Sbjct: 192 IRKTVLHDCRARASETPGLFSLTV--PTGGGKTLSSMAFALDHAVTHGLRRVIYAIPFTS 249 Query: 119 QLKN--TLWAEVSKWLSMLPHRHWFEMQSLSL---HPSGWYAELLEQSMGIDSKHYTITC 173 ++ ++++V ++L H + + + + Sbjct: 250 IIEQNAKVFSDVFGQDNVLEHHCNYRSKDEPEEQGYDKWRGLAAENWDAPVVVTTNVQFF 309 Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217 + RP HN + DEA P + L E Sbjct: 310 ESLFSNRPSRCRKLHNIARSVIVLDEAQAIPTEYLEPCLYALKE 353 >gi|82940932|dbj|BAE48727.1| unnamed protein product [Dengue virus 3] Length = 3390 Score = 39.9 bits (91), Expect = 0.58, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822 >gi|82940928|dbj|BAE48725.1| polyprotein [Dengue virus 3] Length = 3390 Score = 39.9 bits (91), Expect = 0.58, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822 >gi|195428034|ref|XP_002062080.1| GK17342 [Drosophila willistoni] gi|194158165|gb|EDW73066.1| GK17342 [Drosophila willistoni] Length = 681 Score = 39.9 bits (91), Expect = 0.59, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 40/153 (26%), Gaps = 4/153 (2%) Query: 60 EAVDVHCHSNVNNSNPTIFK-CAISAGRGIGKTTLNAWMMLWLISTRPGMSI--ICIANS 116 AV P + +SA G GKT A ++ L+S R + + + Sbjct: 168 RAVIPWILEAHAKPEPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVECKVRALVVLPV 227 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 + +S S + L L + +T Sbjct: 228 AELALQV-YKVISSLCSKTELEVCLLSKQHRLEDEQEKLLELYKGKYYSKVDIVVTTPGR 286 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209 + G + DEA D + + Sbjct: 287 LVDHLHATKGFCLKSLQFLVIDEADRIMDAVFQ 319 >gi|169634533|ref|YP_001708269.1| exonuclease V, alpha subunit [Acinetobacter baumannii SDF] gi|169153325|emb|CAP02436.1| exonuclease V, alpha subunit [Acinetobacter baumannii] Length = 583 Score = 39.9 bits (91), Expect = 0.59, Method: Composition-based stats. Identities = 20/149 (13%), Positives = 37/149 (24%), Gaps = 16/149 (10%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 E ++ + I+ G G GKT A ++ L P + + A Sbjct: 118 EEHLDLLTDPHQRTALQMVTRQSLSIITGGPGTGKTYTLARIIAVLSQAIPHIRVAMAAP 177 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 + + +Q+ P + L+ + S Sbjct: 178 TGKAAQRM----------------QEALQNSFNDPKLLESGLMSDELRNQSTQTIHRLLG 221 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + F + DEAS Sbjct: 222 MGHSQTPRFNQKQPLPYDVIVVDEASMLD 250 >gi|15227913|ref|NP_181756.1| U5 small nuclear ribonucleoprotein helicase, putative [Arabidopsis thaliana] gi|2673917|gb|AAB88651.1| putative ATP-dependent RNA helicase [Arabidopsis thaliana] gi|330255004|gb|AEC10098.1| U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] Length = 2172 Score = 39.9 bits (91), Expect = 0.59, Method: Composition-based stats. Identities = 19/167 (11%), Positives = 40/167 (23%), Gaps = 16/167 (9%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCA----ISAGRGIGKTTLNAWMMLWLISTRPGM--SI 110 E + H + ++ + ++A G GKT + +L P + Sbjct: 1343 ETLYQDFKHFNPVQTQVFTVLYNTSDNVVVAAPTGSGKTICAEFAILRNHLEGPDSAMRV 1402 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + IA E K + W + LL+ + + Sbjct: 1403 VYIAPLEAIAKE----QFRDWEKKFGKGLGLRV------VELTGETLLDLKLLEKGQIII 1452 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217 T + + DE + + + Sbjct: 1453 STPEKWDALSRRWKQRKYIQQVSLFIVDELHLIGGQGGQVLEVIVSR 1499 >gi|56461630|ref|YP_156911.1| exonuclease V subunit alpha [Idiomarina loihiensis L2TR] gi|56180640|gb|AAV83362.1| ATP-dependent exoDNAse (exonuclease V), alpha subunit, superfamily I helicase [Idiomarina loihiensis L2TR] Length = 647 Score = 39.9 bits (91), Expect = 0.59, Method: Composition-based stats. Identities = 27/244 (11%), Positives = 49/244 (20%), Gaps = 34/244 (13%) Query: 42 GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101 KP ++ WQ + F I+ G G GKT ++ L Sbjct: 167 DKPDGDKAEEINWQRVACAN-----------TVRNRFSV-ITGGPGTGKTYTVVRLLTAL 214 Query: 102 ISTR-----PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156 P + + A + + S+ + ++ Sbjct: 215 QHQTLFLGLPPLRVSLAAPTGKAAARLTESIESELNRLRGDAKLATLKDALDAIKPEGKT 274 Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT 216 L + V DEAS + ++L T Sbjct: 275 LHRL---------LGVKPNSRAFKHHADNPLRTD---VVIVDEASMIDIEMMTALLKA-T 321 Query: 217 ELNPNRFWI----MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISR 272 N I ++ + +I Sbjct: 322 PKNARLVLIGDKDQLASVEAGAVLGNLCEGADQGHYHTETAQWLQHVADTPVLPAELIDN 381 Query: 273 YGLD 276 G Sbjct: 382 NGEQ 385 >gi|82940930|dbj|BAE48726.1| unnamed protein product [Dengue virus 3] Length = 3390 Score = 39.9 bits (91), Expect = 0.59, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822 >gi|317478209|ref|ZP_07937375.1| hypothetical protein HMPREF1007_00491 [Bacteroides sp. 4_1_36] gi|316905602|gb|EFV27390.1| hypothetical protein HMPREF1007_00491 [Bacteroides sp. 4_1_36] Length = 375 Score = 39.9 bits (91), Expect = 0.59, Method: Composition-based stats. Identities = 34/276 (12%), Positives = 73/276 (26%), Gaps = 40/276 (14%) Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN----SETQLKN 122 + + + + R GK++L M L + + I +E + Sbjct: 23 RKQLKELLGSGINVMLISPRRWGKSSLVKVAMDELTQEDKHIRVCFIDAFSIKTEAEFYR 82 Query: 123 TLWAEVSKWLSMLPHRHWFEMQSL------SLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 EV + + +++ S+ + L + ++ + ++ Sbjct: 83 IFAREVISCAASTLEKRLEDVKQFLKAVSPSITLKSDPTDTLSFDLKLELEEKSVMEILE 142 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDII-NKSILGFFTELNPNRFWIMT-------- 227 E+ G H + V DE + KS+ G + + Sbjct: 143 LPEKIAAAKGIH----LIVCIDEFQQLALLPGYKSMEGKMRSAWQKQQQVSYCFYGSKRH 198 Query: 228 ---------SNTRRLNGWFYDIFNIPLEDWKRYQID--TRTVEGIDSGFHEGIISRYGLD 276 SN G + I E+W + ++ RT + I E + Sbjct: 199 MMMDIFNNSSNPFYRFGQVLFLQKIKKEEWVPFIVNAFHRTNKEISEQQAEQLCDIVKCH 258 Query: 277 SDVARIEILGQFPQQEVNN------FIPHNYIEEAM 306 S + + I+ M Sbjct: 259 SWYLQQLCYFIWSGTSEKVTDEIIEIRTRQLIDTNM 294 >gi|294675348|ref|YP_003575964.1| ATPase [Prevotella ruminicola 23] gi|294473103|gb|ADE82492.1| archaeal ATPase family protein [Prevotella ruminicola 23] Length = 374 Score = 39.9 bits (91), Expect = 0.59, Method: Composition-based stats. Identities = 29/250 (11%), Positives = 65/250 (26%), Gaps = 21/250 (8%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML-PH 137 A+ A R IGKT L + + + + +++ + A S L+ L P Sbjct: 36 NVALIAPRRIGKTGLIENLYHLKEVQENYYTFLIDIYATKNMEDMVMAMGSAMLASLRPK 95 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF- 196 + S + + R + F + + Sbjct: 96 GAQIMQKFTGFLSSLRSGISFDPAGNPSWNVEIGDIRMPRTTLEEIFHYIESADKPCIVA 155 Query: 197 NDEASGT---PDIINKSILGFFTELNPNRFWIMTSN--------TRRLNGWFYDIFNIPL 245 DE PD +++L + N +I + FY ++ Sbjct: 156 IDEFQSVANYPDGHAEALLRTHIQHCRNANFIFAGSQRTMMAEIFNSPARPFYQSASMMN 215 Query: 246 ------EDWKRY-QIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFI 297 + + ++ Q ++ ++ + F + Sbjct: 216 LGCISMDKYCQFAQEHFSKAGKSLPADVFQMVYERFEGITWYVQRVMNELFSLTSTGSAC 275 Query: 298 PHNYIEEAMS 307 I+ A+ Sbjct: 276 TVEMIDVAID 285 >gi|263613203|gb|ACY70768.1| polyprotein [Dengue virus 3] Length = 3390 Score = 39.9 bits (91), Expect = 0.59, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIIREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTAT-- 1721 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1722 ----------RSEHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|258545085|ref|ZP_05705319.1| probable exonuclease V, alpha subunit [Cardiobacterium hominis ATCC 15826] gi|258519662|gb|EEV88521.1| probable exonuclease V, alpha subunit [Cardiobacterium hominis ATCC 15826] Length = 606 Score = 39.9 bits (91), Expect = 0.59, Method: Composition-based stats. Identities = 18/158 (11%), Positives = 37/158 (23%), Gaps = 30/158 (18%) Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 N + I+ G G GKT A ++ P + I A + K + Sbjct: 113 QQNAIRLARSRRLALINGGPGTGKTYTIARLIHAEQQADPKIRIALAAPTGKAAKRMEES 172 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 + + LP + + + + Sbjct: 173 LAAAGVQDLPAQTLHRLL------------------------------GIGTDGQARYHM 202 Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224 + + DEAS + +++ Sbjct: 203 SRHLPHDLIIIDEASMLSLELAHALIAATATDTRLILL 240 >gi|82940934|dbj|BAE48728.1| unnamed protein product [Dengue virus 3] Length = 3390 Score = 39.9 bits (91), Expect = 0.59, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 27/177 (15%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN 1822 >gi|300112918|ref|YP_003759493.1| hypothetical protein Nwat_0200 [Nitrosococcus watsonii C-113] gi|299538855|gb|ADJ27172.1| protein of unknown function DUF450 [Nitrosococcus watsonii C-113] Length = 997 Score = 39.9 bits (91), Expect = 0.60, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 53/232 (22%), Gaps = 19/232 (8%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P QL+ + + H + + I G GK+ AW+ L+ G Sbjct: 274 PRYHQLKVVRRLLAHARKSGVGK-----RYLIQHSAGSGKSNSIAWLAHQLVGLEQGGRA 328 Query: 111 I----CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ-SLSLHPSGWYAELLEQSMGID 165 + + L + + +++ + E L ++ Sbjct: 329 LFDSVIVVTDRRVLDKQIRDTIKQFVQVSATVGHAEHSGDLRKFLKVGKKIIITTVQKFP 388 Query: 166 ------SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS---ILGFFT 216 + + + G T M +E + D + I Sbjct: 389 FILDEIGDEHRGAKFAIVIDEAHSSQGGKTTAAMNRVLEETAPYGDEMASVEDKINQIME 448 Query: 217 ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG 268 + T +IF P + + Sbjct: 449 SRKMVTNASYFAFTATPKNKTLEIFGEPDPQPDGTVKHSPFHSYTMKQAIQE 500 >gi|324505328|gb|ADY42291.1| ATP-dependent RNA helicase DDX27 [Ascaris suum] Length = 688 Score = 39.9 bits (91), Expect = 0.60, Method: Composition-based stats. Identities = 31/292 (10%), Positives = 71/292 (24%), Gaps = 34/292 (11%) Query: 7 TDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHC 66 D ++ E+++ +E +SF+ ++ P +K F++P Q + Sbjct: 126 ADSFFDETTSELVLASEPSVSFE-YMNLSRP-MLKAVGACGFTKPTPIQAACI------- 176 Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS----IICIANSETQLKN 122 A G GKT +L + +P ++ + + Sbjct: 177 -----PLALAGRDLCACAATGTGKTAAFMLPILERLLFKPKQKSVTRVLVLVPTRELAMQ 231 Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP- 181 R + + + ++ Q + + Sbjct: 232 VFH----------VTRLLSQFSQVEICLCAGGLDIKAQEAALRLGPDIVIATPGRLIDHL 281 Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILG---FFTELNPNRFWIMTSNTRRLNGWFY 238 + DEA D + N + T ++ Sbjct: 282 HNAPNFSLHDIEVLVLDEADRMLDEAFADQMKELIRLCSANRQTLLFSATMTDQIEQLAA 341 Query: 239 DIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290 P+ + +T T + F + + + FP Sbjct: 342 VSLKNPVRIF--INENTETALNLRQEFIRIRENHEHERESIVVALVTRIFPD 391 >gi|289167072|ref|YP_003445339.1| FtsK/SpoIIIE family protein [Streptococcus mitis B6] gi|288906637|emb|CBJ21471.1| FtsK/SpoIIIE family protein [Streptococcus mitis B6] Length = 440 Score = 39.9 bits (91), Expect = 0.60, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 59/166 (35%), Gaps = 25/166 (15%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q ++++D+ VN + +S G G GK+ ++++L L+ + ++ Sbjct: 183 QRREIDSLDIDLGYGVNYNPIKCPHILVSGGTGSGKSVFISFLILELLKRQ--STVYIAD 240 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 + L + +K+++ P+ +++ E+ E+ + + Sbjct: 241 PKNSDLGSLSHYFGNKYVATTPN-------NIARIVRIVVEEMQERYQVMRDNFQYGSNF 293 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDE-----ASGTPDIINKSILGFF 215 + H + + DE ASGT + I+ Sbjct: 294 S-----------EHGFKPICLIIDEMGAFQASGTDKKSKEVIVEVM 328 >gi|237651533|ref|YP_002899004.1| N4 gp68-like protein [Roseophage EE36P1] gi|220898165|gb|ACL81422.1| N4 gp68-like protein [Sulfitobacter phage EE36phi1] Length = 538 Score = 39.9 bits (91), Expect = 0.60, Method: Composition-based stats. Identities = 33/297 (11%), Positives = 71/297 (23%), Gaps = 36/297 (12%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 K RG KTTL + ++ + + +++ V Sbjct: 70 KITNLCARGTAKTTLMMEYLTLYLAMFNKIPGFGPVPGMLYISDSMDNGVKSA-RESIKS 128 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC-RTYSEERPDTFVGPHNTHGMAVFN 197 ++ + L E M +++ + + + N + Sbjct: 129 RYYSSEFLQYWLPESGVRFTENYMEFHNRNGGKFGVKMFGAKSGIRGTKIFNRRPVLAVM 188 Query: 198 D----EASGTPDIINKSILGFFTEL------NPNRFWIMTSNTRRLNGWFYDIFNIPL-- 245 D +A ++I I+ Y Sbjct: 189 DDLISDADSKSPTAMEAINDTVYSGVQYALDPTRHKMILNGTPFNKEDIVYQAIESGAWQ 248 Query: 246 -EDWKRYQ--------IDTRTVEGIDSGFHEGIISR--YGLDSDVARIEILGQFPQQEVN 294 W + + + + + R E++ + + + Sbjct: 249 VNVWPVCKEFPCEREEFSGAWEDRFTYDYVKEMYDSAVMEGKEKSFRQELMLR-ITSDES 307 Query: 295 NFIPHNYI--EEAMSREAIDDLYAPLIMGCDIA---GEGGDKTVVVF----RRGNII 342 I + I + M + Y I D A + D TV+ + GN I Sbjct: 308 RLIQQDEIGWKSRMDILSNRKHYNFYITT-DFATSSKQTADYTVISVWAYDKDGNWI 363 >gi|206889555|ref|YP_002248708.1| phosphate starvation-inducible protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741493|gb|ACI20550.1| phosphate starvation-inducible protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 301 Score = 39.9 bits (91), Expect = 0.60, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 37/123 (30%), Gaps = 14/123 (11%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT L M + + TR I+ + + + L + + Sbjct: 117 GTGKTYLAMAMAIHFLLTRQVSRIVLVRPA------------VEAGEKLGFLPGAIEEKV 164 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 S + Y L M + + + E P F+ + + DEA T Sbjct: 165 SPYLRPLYDALY--DMLDLDRASKLIEKGAIEIAPLAFMRGRTLNDAFIILDEAQNTTTE 222 Query: 207 INK 209 K Sbjct: 223 QMK 225 >gi|169237324|ref|YP_001690529.1| RAD25-type DNA repair helicase [Halobacterium salinarum R1] gi|167728840|emb|CAP15732.1| RAD25-type DNA repair helicase [Halobacterium salinarum R1] Length = 469 Score = 39.9 bits (91), Expect = 0.60, Method: Composition-based stats. Identities = 22/253 (8%), Positives = 59/253 (23%), Gaps = 42/253 (16%) Query: 38 WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97 + +P +Q + A H ++ G GKT L Sbjct: 71 YRDLDLTPAVAIEPRDYQQAALAAWTDHDRRG-----------SVVLPTGSGKTFLA--- 116 Query: 98 MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 +S + + + +++W + L + + Sbjct: 117 --VQAIADASVSTLVVVPTID--------LLNQWHATLTN-------------AFGDQLP 153 Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217 E + H + + ++ + + DE P + I Sbjct: 154 HEIGVLGGGSHNVTDITVTTYDSAYRYINEYGDQFGLLVVDEVHHLPAPTYQQIPEMTIA 213 Query: 218 LNPNRFWIMTSNTRRLNGWFYD-----IFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISR 272 T + D ++ +++ + + ++ Sbjct: 214 PYRLGLTATYERTDGEHNVLEDLIGPVVYEENVDELAGEYLSEYETIHLKVDLTPEERNQ 273 Query: 273 YGLDSDVARIEIL 285 Y + + R + Sbjct: 274 YDDEYQIYRDYLD 286 >gi|123464703|ref|XP_001317120.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3] gi|121899846|gb|EAY04897.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3] Length = 774 Score = 39.9 bits (91), Expect = 0.60, Method: Composition-based stats. Identities = 24/201 (11%), Positives = 45/201 (22%), Gaps = 30/201 (14%) Query: 6 STDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVH 65 E ++ + F+ + G P FS WQ + + Sbjct: 13 PQSISDESQVLSSTISEMDECGIPKFLQNSYL---SGTPPPAFSTLRPWQRSLLLKAEWQ 69 Query: 66 CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW 125 N + A GKT + + P I+ Sbjct: 70 LQKNA----------IVLAPTAGGKTLIAEVAFAQALERNPSAKILYCVPFVALATEKY- 118 Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185 + F ++ S+ +Y ++ + S R +S Sbjct: 119 -------------NLFTLRFPSVTVRAYYHDIGAGPLTQRSIGVCTYERAHSLINSSASG 165 Query: 186 GPHNTHGMAVFNDEASGTPDI 206 + DE D Sbjct: 166 KF---DLDLIVIDEFHMLDDN 183 >gi|78045316|ref|YP_361566.1| putative DotB-like type IV secretion system protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78033820|emb|CAJ19819.1| putative DotB-like type IV secretion system protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 398 Score = 39.9 bits (91), Expect = 0.60, Method: Composition-based stats. Identities = 32/282 (11%), Positives = 72/282 (25%), Gaps = 9/282 (3%) Query: 36 FPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSN-----PTIFKCAISAGRGIGK 90 F W G ++ E E ++ + P + G GK Sbjct: 111 FRWNATGAEIDGSFGISIILRELPEIPPAIDKEDLGDDLYGALYPDDGIVMVCGPTGSGK 170 Query: 91 TTLNAWMMLWLISTRPGMSIICIANSETQ--LKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148 +TL A M+ I+ P I + + + ++ S H + ++ Sbjct: 171 STLLAGMIR-DIAENPDSHCHIITYESPVEFVYDKVEKPTTEIESTSIPDHLPNF-AAAI 228 Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208 S + + S+ + H+T A F P Sbjct: 229 RNSLRRDPDIIVVGEMRDGETIGAAILASQTGHVVYGTAHSTSVGATFTRTMQSLPKNEQ 288 Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG 268 + +LG + + + E +R + + Sbjct: 289 QGMLGGLIDSLRLIICQELVQSTDGKRVALREYLSFGESERRALLTAAMRDPAGVPSVAQ 348 Query: 269 IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREA 310 ++R + + L + + + + E+ + Sbjct: 349 QLTRERGQTKLMHARKLFAAGRIKEDVVLRFELAEQTARAQV 390 >gi|114566027|ref|YP_753181.1| CRISPR-associated helicase Cas3 domain-containing protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336962|gb|ABI67810.1| CRISPR-associated helicase, Cas3 family [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 717 Score = 39.9 bits (91), Expect = 0.60, Method: Composition-based stats. Identities = 22/174 (12%), Positives = 44/174 (25%), Gaps = 13/174 (7%) Query: 66 CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN--T 123 C +F ++ G GKT + L +I + ++ Sbjct: 223 CCRQAAKKEKGLFSLSV--PTGGGKTLSSLEFALRHACKHGMERVIYAVPFTSIIEQNAA 280 Query: 124 LWAEV---SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 ++ E L + + E ++ + AE + + + + + Sbjct: 281 VFREALGDDAVLEHHRNYDFEEDENNPNYKHRLAAENWDAPVIVTTNVQFFESLLA--YK 338 Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDI----INKSILGFFTELNPNRFWIMTSNT 230 P HN V DEA PD + + Sbjct: 339 PSRCRKLHNIANSIVILDEAQTLPDRLLLPCLAILEELLLRYGATIVLCTATQP 392 >gi|332851855|ref|ZP_08433758.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter baumannii 6013150] gi|332867446|ref|ZP_08437606.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter baumannii 6013113] gi|332729640|gb|EGJ60976.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter baumannii 6013150] gi|332733986|gb|EGJ65130.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter baumannii 6013113] Length = 587 Score = 39.9 bits (91), Expect = 0.61, Method: Composition-based stats. Identities = 20/149 (13%), Positives = 37/149 (24%), Gaps = 16/149 (10%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 E ++ + I+ G G GKT A ++ L P + + A Sbjct: 122 EEHLDLLTDPHQRAALQMVTRQSLSIITGGPGTGKTYTLARIIAVLSQAIPHIRVAMAAP 181 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 + + +Q+ P + L+ + S Sbjct: 182 TGKAAQRM----------------QEALQNSFNDPKLLESGLMSDELRNQSTQTIHRLLG 225 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + F + DEAS Sbjct: 226 MGHSQTPRFNQKQPLPYDVIVVDEASMLD 254 >gi|291535269|emb|CBL08381.1| DNA or RNA helicases of superfamily II [Roseburia intestinalis M50/1] Length = 827 Score = 39.9 bits (91), Expect = 0.61, Method: Composition-based stats. Identities = 29/194 (14%), Positives = 58/194 (29%), Gaps = 34/194 (17%) Query: 42 GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101 + +P Q+E + A++ K + A G+GKT L A Sbjct: 209 DTNVRVLYEPRGAQIEALCALEDTRAEGA-------RKALVQAATGVGKTYLAA------ 255 Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161 ++ ++ +A+ E L A K + +F +S Sbjct: 256 FDSKNYKRVLFVAHREEILNQA--ALSFKNVRNSDDYGFFTGKSK--------------- 298 Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221 + T + T + + DE + + I+ +F P Sbjct: 299 -ENARSVIFASVSTLGRKEYLTEEYFTKDYFDYIVIDEFHHAVNDQYRRIIEYF---EPK 354 Query: 222 RFWIMTSNTRRLNG 235 +T+ R++G Sbjct: 355 FLLGLTATPDRMDG 368 >gi|237725012|ref|ZP_04555493.1| DNA repair helicase [Bacteroides sp. D4] gi|229436750|gb|EEO46827.1| DNA repair helicase [Bacteroides dorei 5_1_36/D4] Length = 747 Score = 39.9 bits (91), Expect = 0.61, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 50/167 (29%), Gaps = 20/167 (11%) Query: 43 KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102 P F +P +Q E +N S +F A G GKT + +L + Sbjct: 270 SPQFPFPEPRPYQKEAF--------NNWKASQKGLFAMA----TGTGKTLTSLNCLLQIY 317 Query: 103 STRPGMSIICIANSETQLKNTLWAEVSK------WLSMLPHRHWFEMQSLSLHPSGWYAE 156 + + + + T ++ W + K + + + + + AE Sbjct: 318 NKFKFYQALILVPTITLVEQ--WEDECKRFNFSHIIKVSSKNQGWRSEIDDIKLKESLAE 375 Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 E S+ + S + + M + DEA Sbjct: 376 SDESSLSFIIITTYASFSRESTFKQLMSLSKKIQRQMLLIADEAHNI 422 >gi|283797954|ref|ZP_06347107.1| CRISPR-associated helicase Cas3 domain protein [Clostridium sp. M62/1] gi|291074253|gb|EFE11617.1| CRISPR-associated helicase Cas3 domain protein [Clostridium sp. M62/1] Length = 758 Score = 39.9 bits (91), Expect = 0.61, Method: Composition-based stats. Identities = 18/211 (8%), Positives = 56/211 (26%), Gaps = 15/211 (7%) Query: 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN--TLWAEVSKWLSM 134 +F+ + G GKT + L + +I + + ++ +++++ ++ Sbjct: 244 LFRLTV--PTGGGKTISSLAFALRHGAEHEMKRVIYVIPYTSIIEQNAKIFSDILGRENV 301 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 L + +S + + + + HN Sbjct: 302 LEDHCNIDYESDEE-LKPLHLAAENWDKPVVVTTNVQFFESLFSNKSSKCRKLHNIADSV 360 Query: 195 VFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTR-----RLNGWFYDIFNIPL 245 + DEA P ++ + R + + ++ Sbjct: 361 IIFDEAQMLPCEYLRPCIAAMEELLLRYRSTLVLCTATQPALGGLFRKSITWEELCPDRE 420 Query: 246 EDWKRY-QIDTRTVEGIDSGFHEGIISRYGL 275 E ++ + + + I + + Sbjct: 421 EQFQFFKRCQILNLGRIRREELIDRLEQEDQ 451 >gi|193076198|gb|ABO10818.2| exonuclease V alpha subunit [Acinetobacter baumannii ATCC 17978] Length = 587 Score = 39.9 bits (91), Expect = 0.61, Method: Composition-based stats. Identities = 20/149 (13%), Positives = 37/149 (24%), Gaps = 16/149 (10%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 E ++ + I+ G G GKT A ++ L P + + A Sbjct: 122 EEHLDLLTDPHQRAALQMVTRQSLSIITGGPGTGKTYTLARIIAVLSQAIPHIRVAMAAP 181 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 + + +Q+ P + L+ + S Sbjct: 182 TGKAAQRM----------------QEALQNSFNDPKLLESGLMSDELRNQSTQTIHRLLG 225 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + F + DEAS Sbjct: 226 MGHSQTPRFNQKQPLPYDVIVVDEASMLD 254 >gi|169797387|ref|YP_001715180.1| exonuclease V, alpha subunit [Acinetobacter baumannii AYE] gi|213155798|ref|YP_002317843.1| exonuclease V alpha subunit [Acinetobacter baumannii AB0057] gi|215484827|ref|YP_002327062.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter baumannii AB307-0294] gi|301345351|ref|ZP_07226092.1| exonuclease V, alpha subunit [Acinetobacter baumannii AB056] gi|301512606|ref|ZP_07237843.1| exonuclease V, alpha subunit [Acinetobacter baumannii AB058] gi|301594569|ref|ZP_07239577.1| exonuclease V, alpha subunit [Acinetobacter baumannii AB059] gi|169150314|emb|CAM88211.1| exonuclease V, alpha subunit [Acinetobacter baumannii AYE] gi|213054958|gb|ACJ39860.1| exonuclease V alpha subunit [Acinetobacter baumannii AB0057] gi|213986255|gb|ACJ56554.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter baumannii AB307-0294] Length = 583 Score = 39.9 bits (91), Expect = 0.61, Method: Composition-based stats. Identities = 20/149 (13%), Positives = 37/149 (24%), Gaps = 16/149 (10%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 E ++ + I+ G G GKT A ++ L P + + A Sbjct: 118 EEHLDLLTDPHQRAALQMVTRQSLSIITGGPGTGKTYTLARIIAVLSQAIPHIRVAMAAP 177 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 + + +Q+ P + L+ + S Sbjct: 178 TGKAAQRM----------------QEALQNSFNDPKLLESGLMSDELRNQSTQTIHRLLG 221 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + F + DEAS Sbjct: 222 MGHSQTPRFNQKQPLPYDVIVVDEASMLD 250 >gi|126640436|ref|YP_001083420.1| exonuclease V alpha subunit [Acinetobacter baumannii ATCC 17978] Length = 516 Score = 39.9 bits (91), Expect = 0.61, Method: Composition-based stats. Identities = 20/149 (13%), Positives = 37/149 (24%), Gaps = 16/149 (10%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 E ++ + I+ G G GKT A ++ L P + + A Sbjct: 51 EEHLDLLTDPHQRAALQMVTRQSLSIITGGPGTGKTYTLARIIAVLSQAIPHIRVAMAAP 110 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 + + +Q+ P + L+ + S Sbjct: 111 TGKAAQRM----------------QEALQNSFNDPKLLESGLMSDELRNQSTQTIHRLLG 154 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + F + DEAS Sbjct: 155 MGHSQTPRFNQKQPLPYDVIVVDEASMLD 183 >gi|241667544|ref|ZP_04755122.1| DNA/RNA helicase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876089|ref|ZP_05248799.1| DNA/RNA helicase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842110|gb|EET20524.1| DNA/RNA helicase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 912 Score = 39.9 bits (91), Expect = 0.61, Method: Composition-based stats. Identities = 26/185 (14%), Positives = 50/185 (27%), Gaps = 35/185 (18%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P++ Q + +E +D N K I + G GKT L+A + ++ Sbjct: 188 PNKVQQDALENLDRLRQQGKN-------KSLIISATGTGKTFLSA----FDVAKVKPKRC 236 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + I + ++ L + + + Sbjct: 237 LFIVHRTNIAIK-------------------AKETFEKVIRDKTLGLYTGEIKDPADYLF 277 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 T +T + P T + DE +S + P MT+ Sbjct: 278 ATVQTL--KNPQTLASFETNEFDYIIVDE---VHHAEAQSYKKVLSHFKPKFLLGMTATP 332 Query: 231 RRLNG 235 R + Sbjct: 333 ERSDN 337 >gi|219111171|ref|XP_002177337.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217411872|gb|EEC51800.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 1589 Score = 39.9 bits (91), Expect = 0.61, Method: Composition-based stats. Identities = 17/140 (12%), Positives = 34/140 (24%), Gaps = 2/140 (1%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 + A G GKT + +L + P + IA ++ + L + S Sbjct: 960 VLLGAPTGSGKTIVAELALLRMKRIFPKGICVYIAPLKSLARERLKEWKIRLGSAPLRWK 1019 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY--SEERPDTFVGPHNTHGMAVFN 197 E+ + H G + E + + Sbjct: 1020 ILELSGDTHHDQGVVESADVLVCTPEKWDLISRGWRSYVKAEASENAGKAFVKRVKLLVL 1079 Query: 198 DEASGTPDIINKSILGFFTE 217 DE + + + Sbjct: 1080 DEVHLLGEERGAVLEAIVSR 1099 >gi|147801232|emb|CAN75572.1| hypothetical protein VITISV_009507 [Vitis vinifera] Length = 489 Score = 39.9 bits (91), Expect = 0.61, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 46/166 (27%), Gaps = 24/166 (14%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGR--------GIGKTTLNAWMMLWLISTRPGMS 109 M+ + H ++ A+ +GR G GKT A M+ +P + Sbjct: 134 IMKDIXFHEYTRPTFIQAQAMPVAL-SGRDLLGCAETGSGKTAAFAIPMIQHCLAQPPVR 192 Query: 110 ------IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163 + +A + E+++ + + S + EQ Sbjct: 193 RGDGPLALVLAPT---------RELAQQIEKEVKAFSRSLDSFRTAIVVGGTNISEQRSE 243 Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209 + + + + V DEA D+ + Sbjct: 244 LRAGVNIVVATPGRFIHHLQEGNTSLSRISFVVLDEADRMLDMGFE 289 >gi|120603537|ref|YP_967937.1| PhoH family protein [Desulfovibrio vulgaris DP4] gi|120563766|gb|ABM29510.1| PhoH family protein [Desulfovibrio vulgaris DP4] Length = 398 Score = 39.9 bits (91), Expect = 0.61, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 64/224 (28%), Gaps = 15/224 (6%) Query: 32 VMRFFPWGIKGKPLEHFSQPH--RWQLEFMEAVDVHCHSN---VNNSNPTIFKCAISAGR 86 V F W P WQ E + H N +P I +I + Sbjct: 148 VPNCFRWENGQPVFHGPDGPRAVTWQHEVWKVAPRSVHQNLAFELMLHPGIDIVSIQSEA 207 Query: 87 GIGKTTLNAWMMLWLISTR---PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 G GKT L L L+ R P I + + M P+ + + Sbjct: 208 GYGKTFLALAAALHLVFERKDTPYRKIYLVKPVVEIGARMGFLPGDIEEKMHPYIRYVQD 267 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 L LH ++ + + + + E +P +V N V DE Sbjct: 268 LLLKLHD---LRPANRVFQSAEAGNMKLNPKRF-EIQPIAYVRGMNLENAVVIIDEMQNL 323 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247 T + +TR+++ + + N L Sbjct: 324 SRNE---ARALLTRMGEGVKCFCLGDTRQVDNQYLNESNNGLNW 364 >gi|225691000|gb|ACO06188.1| polyprotein [Dengue virus 3] Length = 3390 Score = 39.9 bits (91), Expect = 0.62, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 45/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F + + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDKERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|195456668|ref|XP_002075234.1| GK16915 [Drosophila willistoni] gi|194171319|gb|EDW86220.1| GK16915 [Drosophila willistoni] Length = 1013 Score = 39.9 bits (91), Expect = 0.62, Method: Composition-based stats. Identities = 29/207 (14%), Positives = 63/207 (30%), Gaps = 22/207 (10%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 +++A RG GK+ + + +++ + L L+ V K L ++ Sbjct: 277 MSLTAARGRGKSAAL-GLAISAAIAFGYVNVYVTSPHPENLIT-LFEFVLKGFDALEYQE 334 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + + ++ ++ +S+ + + DE Sbjct: 335 HADYTIIRSTNADYKKAIIRINITRNSRQTIQYIAPSDTHLLNAAD--------LLLIDE 386 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 A+ P + K +LG + F T N Y+ L Q+ Sbjct: 387 AAAIPLPLVKKMLGPYL-----IFMASTIN-------GYEGTGRSLSLKLISQLQKENNA 434 Query: 260 GIDSGFHEGIISRYGLDSDVARIEILG 286 E I + D + I +L Sbjct: 435 RPPLKLEESIRYQENDDIERWLINLLC 461 >gi|19113352|ref|NP_596560.1| ATP-dependent RNA helicase Slh1 [Schizosaccharomyces pombe 972h-] gi|18202096|sp|O60072|MUG81_SCHPO RecName: Full=Putative helicase mug81; AltName: Full=Meiotically up-regulated gene 81 protein gi|3080535|emb|CAA18663.1| ATP-dependent RNA helicase Slh1 [Schizosaccharomyces pombe] Length = 1935 Score = 39.9 bits (91), Expect = 0.62, Method: Composition-based stats. Identities = 20/182 (10%), Positives = 44/182 (24%), Gaps = 19/182 (10%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTR-PGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + A G GKT + A + W P ++ IA + +K + + + + Sbjct: 1152 NIFVGAPTGSGKT-MAAELATWRALHNYPKSKVVYIAPMKALVKERVKDWGHRLVEPMGI 1210 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 E+ + + + D + Sbjct: 1211 S-MIELTGDTNPDVKAVTNANIIITTPEKWDGITRSWKSRKYVQD---------VSLIIL 1260 Query: 198 DEAS-------GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250 DE ++I + ++ N + S + NI + Sbjct: 1261 DEIHLLGSDRGPVLEMIVSRMNYVASQTNKKVRVLGLSTAVANANDLANWLNIRDGLFNF 1320 Query: 251 YQ 252 Sbjct: 1321 RH 1322 >gi|325923766|ref|ZP_08185383.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865] gi|325545764|gb|EGD17001.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865] Length = 539 Score = 39.9 bits (91), Expect = 0.63, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 49/191 (25%), Gaps = 14/191 (7%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 + Q AV H + + G GKT +ML + Sbjct: 31 AGLTGFRLPQRAAAFAVLSHLDISPAKPA------IVVMPTGTGKTDTIFALMLAGLF-- 82 Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 + + S+ S ++ S +H + + L+ S Sbjct: 83 --KRTLLVVPSDALRSQMSERLESLSTLRQIEVVTDQLLSPKVHLAAGLSGALDLSAIEA 140 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225 + T T + +PD V DEA + I + Sbjct: 141 ANVTVATPDTLALLQPDALRQVMGL-FTHVVFDEAHHVVADTWERIRAA---ADGKPTLY 196 Query: 226 MTSNTRRLNGW 236 T+ RL+ Sbjct: 197 FTATPFRLDDQ 207 >gi|255951308|ref|XP_002566421.1| Pc22g25350 [Penicillium chrysogenum Wisconsin 54-1255] gi|211593438|emb|CAP99823.1| Pc22g25350 [Penicillium chrysogenum Wisconsin 54-1255] Length = 1109 Score = 39.9 bits (91), Expect = 0.63, Method: Composition-based stats. Identities = 29/252 (11%), Positives = 68/252 (26%), Gaps = 37/252 (14%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 ++ G+GKT + A +ML I+ +A ++ VS+ +S Sbjct: 311 NLLVALPTGLGKTFIAATIMLNWFRWTKDSQIVFVAPTK--------PLVSQQVSACLDI 362 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 ++ +G + + + + +T +T + P + + D Sbjct: 363 AGIPRSESTM-LTGGASPGIRAEEWKSKRVFFMTPQTLINDLKTGIADP--KRIVLLVVD 419 Query: 199 EASGTPDIINKS-ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257 EA ++ F N + + + T + Sbjct: 420 EAHRATGAYAYVEVVKFLRRFNNSFRVLALTATPGST--------------------VES 459 Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILGQFP-----QQEVNNFIPHNYIEEAMSREAID 312 V+ + G + +S R + + + + + A+ Sbjct: 460 VQAVIDGLDIARVEIRTENSIDIRDYVHARNIEIETFENSDEMIFCMDLMSAALQPLLDQ 519 Query: 313 DLYAPLIMGCDI 324 G D Sbjct: 520 LRTINAYWGRDP 531 >gi|9758045|dbj|BAB08508.1| DNA excision repair cross-complementing protein [Arabidopsis thaliana] Length = 754 Score = 39.9 bits (91), Expect = 0.63, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 50/171 (29%), Gaps = 21/171 (12%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 L+ +QP +Q + + + + + + G GK+ ++ Sbjct: 260 LDMELKPHAQPRPYQEKSLSKMFGNGRARSG--------IIVLPC-GAGKS-----LVGV 305 Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 + R S +C+A + + WA K S + S S A ++ Sbjct: 306 SAAARIKKSCLCLATNAVSVDQ--WAYQFKLWSTIKDDQICRFTSDSKERFRGNAGVVVT 363 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211 + SEE N + DE P + + + Sbjct: 364 TYN-----MIAFGGKRSEEAEKIIEEMRNREWGLLLMDEVHVVPAHMFRKV 409 >gi|18422089|ref|NP_568591.1| XPB2; ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / helicase/ hydrolase/ nucleic acid binding [Arabidopsis thaliana] gi|57013267|sp|Q9FUG4|XPB2_ARATH RecName: Full=DNA repair helicase XPB2; AltName: Full=ERCC3 homolog 2; AltName: Full=RAD25 homolog 2; Short=AtXPB2; AltName: Full=XPB homolog 2 gi|11037022|gb|AAG27465.1|AF308595_1 putative DNA repair protein and transcription factor [Arabidopsis thaliana] gi|47606402|gb|AAT36214.1| putative DNA repair and transcription factor XBP2 [Arabidopsis thaliana] gi|332007286|gb|AED94669.1| DNA repair helicase XPB2 [Arabidopsis thaliana] Length = 766 Score = 39.9 bits (91), Expect = 0.63, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 50/171 (29%), Gaps = 21/171 (12%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 L+ +QP +Q + + + + + + G GK+ ++ Sbjct: 272 LDMELKPHAQPRPYQEKSLSKMFGNGRARSG--------IIVLPC-GAGKS-----LVGV 317 Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 + R S +C+A + + WA K S + S S A ++ Sbjct: 318 SAAARIKKSCLCLATNAVSVDQ--WAYQFKLWSTIKDDQICRFTSDSKERFRGNAGVVVT 375 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211 + SEE N + DE P + + + Sbjct: 376 TYN-----MIAFGGKRSEEAEKIIEEMRNREWGLLLMDEVHVVPAHMFRKV 421 >gi|188586603|ref|YP_001918148.1| type III restriction protein res subunit [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351290|gb|ACB85560.1| type III restriction protein res subunit [Natranaerobius thermophilus JW/NM-WN-LF] Length = 1082 Score = 39.9 bits (91), Expect = 0.64, Method: Composition-based stats. Identities = 18/162 (11%), Positives = 42/162 (25%), Gaps = 14/162 (8%) Query: 40 IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML 99 + + +Q E ++A++ I+ G GKT + ++ Sbjct: 362 ELKEEPLDYLGLRYYQEEAIKAIEKGLEEG-------RQSLLIAMATGTGKTRMAIGLIY 414 Query: 100 WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159 L+ +R ++ + + +N L + + + A Sbjct: 415 RLVKSRRFKRVLFLVD-----RNALGKQAENAFKDSKLESFNSFTEI-FELQSLKAPNPN 468 Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + R P+ + DEA Sbjct: 469 PETKVHISTVQGMMRRIYYNDPEKDKPTV-DQYDCIVVDEAH 509 >gi|119489004|ref|ZP_01621939.1| PhoH-like protein [Lyngbya sp. PCC 8106] gi|119454960|gb|EAW36103.1| PhoH-like protein [Lyngbya sp. PCC 8106] Length = 317 Score = 39.9 bits (91), Expect = 0.64, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 46/148 (31%), Gaps = 17/148 (11%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT L A + + + + +I + + L Q + Sbjct: 137 GTGKTYLAAIIAVQALLSDQYERLILTRPA------------VEAGERLGFLPGDLQQKV 184 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + + Y L + K + R E P ++ + V DEA T Sbjct: 185 NPYLRPLYDALY--ELIDPEKTANLMERGIIEVAPLAYMRGRTLNNAFVILDEAQNTTPA 242 Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLN 234 K + T L ++T +T + + Sbjct: 243 QMKMV---LTRLGFRSRMVVTGDTTQTD 267 >gi|148653717|ref|YP_001280810.1| type III restriction enzyme, res subunit [Psychrobacter sp. PRwf-1] gi|148572801|gb|ABQ94860.1| type III restriction enzyme, res subunit [Psychrobacter sp. PRwf-1] Length = 946 Score = 39.9 bits (91), Expect = 0.64, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 59/193 (30%), Gaps = 33/193 (17%) Query: 43 KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102 L P++ Q E ++ + S N K I + G GKT L+A + + Sbjct: 209 TALNQPVTPNQMQSEALKNLSDLRKSGKN-------KALIISATGTGKTYLSA----FDV 257 Query: 103 STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162 + + I + T + L K L F QS L ++ + S Sbjct: 258 QQYQPKTFLFIVHRRTIAEEAL-KTFRKLLGSKISMGLFSGQSKDLDCDYLFSTVQTIS- 315 Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222 + + + H + DE K+IL +F Sbjct: 316 -----------------KQENLKLFNQQHFDYIVIDETHRAGAQSYKAILDYFKPG---F 355 Query: 223 FWIMTSNTRRLNG 235 MT+ R +G Sbjct: 356 LLGMTATPERTDG 368 >gi|150397042|ref|YP_001327509.1| hypothetical protein Smed_1839 [Sinorhizobium medicae WSM419] gi|150028557|gb|ABR60674.1| protein of unknown function DUF264 [Sinorhizobium medicae WSM419] Length = 477 Score = 39.9 bits (91), Expect = 0.64, Method: Composition-based stats. Identities = 35/278 (12%), Positives = 66/278 (23%), Gaps = 29/278 (10%) Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML---------WLISTRPGMSIICIA--N 115 + + T + AG +GKT A W R + +A Sbjct: 47 QREFHAAGATFRERLFMAGNQLGKTLAGAAEAAMHLTGRYPEWWQGRRFDRPVAMLAGSE 106 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 S ++ + + + + + + S +DS Sbjct: 107 SYELTRDGVQRLL---IGPPLNEDEWGTGFVPKATIQATTRRSGASGALDSVTVRHVAGG 163 Query: 176 YSEERPDTFVGPHNTH----GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 S + V+ DE P+ + G +T Sbjct: 164 ASTLLFKAYEQGRAKWQANTVDYVWFDEEP--PEDVY--FEGITRTNATRGSIAVTFTPL 219 Query: 232 RLNGWFYDIF-NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290 + + D + + E II Y AR + P Sbjct: 220 KGLSAVVARYLMEKSADREVTTMTIEDAEHYTPEERRRIIDSYPAHEREARTKG---VPA 276 Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPLIM-GCDIAGE 327 P EE++ + D + + G D + Sbjct: 277 LGSGRIFP--VTEESIRADPFDIPKHWVQIGGLDFGWD 312 >gi|260062485|ref|YP_003195565.1| ATP-dependent exoDNAse [Robiginitalea biformata HTCC2501] gi|88784050|gb|EAR15220.1| ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [Robiginitalea biformata HTCC2501] Length = 479 Score = 39.9 bits (91), Expect = 0.64, Method: Composition-based stats. Identities = 25/173 (14%), Positives = 43/173 (24%), Gaps = 41/173 (23%) Query: 43 KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR-GIGKTTLNAWMMLWL 101 + +P R Q + + + + + G G GKTTL ++ Sbjct: 13 LEEKFPHEPTRNQERALRQLSDFIIGAHTD------RIFLLKGYAGTGKTTLLGTLI--- 63 Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161 LW K + M P ++ S + + Sbjct: 64 --------------------TNLWHSKKKAVLMAPTGRAAKVMSTYTNSRAYTIHRQIYI 103 Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF 214 + S T + + DEAS PD + G Sbjct: 104 PKKE----------RSGGVRFTLAPNRHRN-TIFIVDEASMIPDSPVSTAKGS 145 >gi|328772256|gb|EGF82294.1| hypothetical protein BATDEDRAFT_34342 [Batrachochytrium dendrobatidis JAM81] Length = 741 Score = 39.9 bits (91), Expect = 0.65, Method: Composition-based stats. Identities = 20/153 (13%), Positives = 40/153 (26%), Gaps = 13/153 (8%) Query: 87 GIGKTTLNAWMMLWLISTRPG----MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 G GKT ++ + RP ++ + + + S+ F Sbjct: 234 GSGKTAAFIIPIVERLLFRPKNDATTRVLILVPTRELG--------VQCQSVAISISKFT 285 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 S L G + E + + T + ++ + DEA Sbjct: 286 DISTCLCVGGLPTKTQEAELRLRPDIIIATPGRLIDHIHNSPSFF-LDAIDILVIDEADR 344 Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 D + L + P M + + Sbjct: 345 ILDDGFDAELNEIIKHTPRTRQTMLFSATMTDN 377 >gi|170058205|ref|XP_001864819.1| activating signal cointegrator 1 complex subunit 3 [Culex quinquefasciatus] gi|167877399|gb|EDS40782.1| activating signal cointegrator 1 complex subunit 3 [Culex quinquefasciatus] Length = 1036 Score = 39.9 bits (91), Expect = 0.65, Method: Composition-based stats. Identities = 18/167 (10%), Positives = 40/167 (23%), Gaps = 21/167 (12%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 + F Q + Q + AV + A G GKTT+ + +L ++ Sbjct: 401 DRFPQFNPIQTQVFNAVYNSED-----------NVFVGAPTGSGKTTIAEFAVLRMLQQN 449 Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 P ++ + + + + W F + + Sbjct: 450 PHGRVVYLVSRDALAELI----FMDWHQK------FGQNLGCKVVKLTGETGTDLKLIAK 499 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212 + T + + + DE + Sbjct: 500 GQIIVTTADKWDILSRRWKQRKNVQNIQLFIVDELQLIGGEEGPVLE 546 >gi|158851714|gb|ABW82058.1| polyprotein [Dengue virus 3] Length = 3390 Score = 39.9 bits (91), Expect = 0.65, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADVFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|46578858|ref|YP_009666.1| phoH-like protein [Desulfovibrio vulgaris str. Hildenborough] gi|46448270|gb|AAS94925.1| phoH-related protein [Desulfovibrio vulgaris str. Hildenborough] gi|311232721|gb|ADP85575.1| PhoH family protein [Desulfovibrio vulgaris RCH1] Length = 398 Score = 39.9 bits (91), Expect = 0.65, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 65/224 (29%), Gaps = 15/224 (6%) Query: 32 VMRFFPWGIKGKPLEHFSQPH--RWQLEFMEAVDVHCHSN---VNNSNPTIFKCAISAGR 86 V F W P WQ E + H N +P I +I + Sbjct: 148 VPNCFRWENGQPVFHGPDGPRAVTWQHEVWKVAPRSVHQNLAFELMLHPGIDIVSIQSEA 207 Query: 87 GIGKTTLNAWMMLWLISTR---PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 G GKT L L L+ R P I + + M P+ + + Sbjct: 208 GYGKTFLALAAALHLVFERKDTPYRKIYLVKPVVEIGARMGFLPGDIEEKMHPYIRYVQD 267 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 L LH +++ + + + + E +P +V N V DE Sbjct: 268 LLLKLHD---LRPANRVFQSVEAGNMKLNPKRF-EIQPIAYVRGMNLENAVVIIDEMQNL 323 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247 T + +TR+++ + + N L Sbjct: 324 SRNE---ARALLTRMGEGVKCFCLGDTRQVDNQYLNESNNGLNW 364 >gi|54023354|ref|YP_117596.1| hypothetical protein nfa13870 [Nocardia farcinica IFM 10152] gi|54014862|dbj|BAD56232.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 926 Score = 39.9 bits (91), Expect = 0.65, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 55/206 (26%), Gaps = 25/206 (12%) Query: 17 EMLMHAECVLSF-KNFVMRFFPWG--IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNS 73 L+ C+ + F WG I P + P LE ++ + + Sbjct: 211 TDLLALLCIPDPQIAHLAGGFDWGVPIAHVPSLASTVPR---LEILDRLATAIELDPAAR 267 Query: 74 NPTIFKCAISAG-RGIGKTTLNAWMMLWLISTRP-----GMSIICIANSETQLKNTLWAE 127 +PT AI+AG G GK+TL A + +A Q+++ L Sbjct: 268 SPT---IAIAAGSTGTGKSTLAADYCHINYNRYEFICWIDSRDAGLAE--AQVRDALLRL 322 Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187 + +L H W S + Y + S T Sbjct: 323 TGSVVKPGADVAGPFCTALGRHRGPWLLVFDGASNPAVIEKYVPSAGHGSVIITTT---- 378 Query: 188 HNTHGMAVFNDEASGTPDIINKSILG 213 + A + Sbjct: 379 ----NSLGWWTSAHRIDVEAFTTAEA 400 >gi|255730915|ref|XP_002550382.1| DNA repair protein RAD16 [Candida tropicalis MYA-3404] gi|240132339|gb|EER31897.1| DNA repair protein RAD16 [Candida tropicalis MYA-3404] Length = 855 Score = 39.9 bits (91), Expect = 0.65, Method: Composition-based stats. Identities = 30/209 (14%), Positives = 55/209 (26%), Gaps = 12/209 (5%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G+GKT + + + RP + + E+ K + + Sbjct: 274 GMGKTIQTIGLFMHDRTKRPNLVVGPTVALMQ-----WKNEIEKHTEPGSLKVLLYHGAG 328 Query: 147 SL----HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 S + L S+ HN V DEA Sbjct: 329 RSNNVADLSDYDVILTSYSVLESVYRKQNYGFRRKAGLVKEESALHNIPFYRVILDEAHN 388 Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNT--RRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 D + + +ELN + W +T R+ + I + L+ + Y + Sbjct: 389 IKDRNSNTSKAA-SELNTQKRWCLTGTPLQNRIGEMYSLIRYMKLDPFHLYFCTKCDCKS 447 Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQFP 289 F +G + + F Sbjct: 448 THWKFSDGRRCDHCQHPPMQHTNFFNHFM 476 >gi|295674415|ref|XP_002797753.1| ATP-dependent RNA helicase DBP3 [Paracoccidioides brasiliensis Pb01] gi|226280403|gb|EEH35969.1| ATP-dependent RNA helicase DBP3 [Paracoccidioides brasiliensis Pb01] Length = 486 Score = 39.9 bits (91), Expect = 0.65, Method: Composition-based stats. Identities = 28/256 (10%), Positives = 52/256 (20%), Gaps = 34/256 (13%) Query: 31 FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90 F PLE+FS+P Q S A G GK Sbjct: 73 FSYLPSDSKELYGPLENFSKPTPIQ------------SVSWPFLFAGRDVIGVAETGSGK 120 Query: 91 TTLNAWMMLWLISTRPGMS------IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 T + + G + I + + + P+ Sbjct: 121 TLAFGVPCIRKVLEINGPRSSSRISAVIITPTRELATQIY----DQLMKFTPNNVGIAC- 175 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + K + T + + DEA Sbjct: 176 -------IYGGASKDDQRRALKKASVVVATTGRLKDFQGDESLRLDKVKYLVLDEADRML 228 Query: 205 DIINKS----ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 D + I+G + + T+ D F + + Sbjct: 229 DKGFEQDIKDIVGAMPSSKKRQTVMFTATWPISVRKLADTFMKDQVMITIGDLSSDIRAN 288 Query: 261 IDSGFHEGIISRYGLD 276 ++ + Sbjct: 289 TRIKQIVEVLKPEDKE 304 >gi|196007514|ref|XP_002113623.1| hypothetical protein TRIADDRAFT_26257 [Trichoplax adhaerens] gi|190584027|gb|EDV24097.1| hypothetical protein TRIADDRAFT_26257 [Trichoplax adhaerens] Length = 642 Score = 39.9 bits (91), Expect = 0.65, Method: Composition-based stats. Identities = 17/157 (10%), Positives = 48/157 (30%), Gaps = 12/157 (7%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 ++ G+GKT + A +M P ++ +A ++ V++ + Sbjct: 45 NTLVTLPTGLGKTFIAAVVMYNFFRWYPNGKVVFMAPTK--------PLVAQQEEACYN- 95 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + ++ +G + + + + +T + + + + D Sbjct: 96 VTGIPRDTTIRLTGTMNPDKRRQVWQSKRVFFLTPQVLQNDL--NRETCCANDIVCLVVD 153 Query: 199 EAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 EA + ++ N + S T + Sbjct: 154 EAHRALGNHAYCQVIRGLCNYTRNFRVLALSATPGDD 190 >gi|169603375|ref|XP_001795109.1| hypothetical protein SNOG_04697 [Phaeosphaeria nodorum SN15] gi|160706381|gb|EAT88457.2| hypothetical protein SNOG_04697 [Phaeosphaeria nodorum SN15] Length = 1275 Score = 39.9 bits (91), Expect = 0.65, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 52/157 (33%), Gaps = 12/157 (7%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 ++ G+GKT + A +ML I+ +A ++ V++ + H Sbjct: 320 NLLVALPTGLGKTFIAATIMLNWYRWTKDSQIVFVAPTK--------PLVAQQIDACFHI 371 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 ++ +G + L + + +T +T + + P + + D Sbjct: 372 AGIPRSQTTM-LTGGVSPALRSEEWKSKRVFFMTPQTLLNDLKHGYADP--KKLVLLVVD 428 Query: 199 EASGTPDIINKS-ILGFFTELNPNRFWIMTSNTRRLN 234 EA ++ F N + + + T N Sbjct: 429 EAHRATGAYAYVEVVSFLRRFNQSFRVLALTATPGAN 465 >gi|15614358|ref|NP_242661.1| arsenical pump-driving ATPase [Bacillus halodurans C-125] gi|10174413|dbj|BAB05514.1| arsenical pump-driving ATPase [Bacillus halodurans C-125] Length = 313 Score = 39.9 bits (91), Expect = 0.65, Method: Composition-based stats. Identities = 18/148 (12%), Positives = 43/148 (29%), Gaps = 11/148 (7%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G+GK+T A W + R +++ + L + E+ + F + Sbjct: 17 GVGKSTSAASFA-WRCAERGEKTLLISTDPAHNLGDLFHTEIGAKHKK-ITDNLFATEID 74 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRT----YSEERPDTFVGPHNTHGMAVFNDEASG 202 + Y + ++ ++ K + + P ++ DE Sbjct: 75 PEQETRRYIQSVKDNLRGMVKSTMLDEVNRQIDAAAATPGADEAAMFNAISSIVLDEQGT 134 Query: 203 TPDIINKSI-----LGFFTELNPNRFWI 225 ++ + + T WI Sbjct: 135 YDKLVFDTAPTGHTIRLLTLPEMMGVWI 162 >gi|255072719|ref|XP_002500034.1| dead box helicase [Micromonas sp. RCC299] gi|226515296|gb|ACO61292.1| dead box helicase [Micromonas sp. RCC299] Length = 1778 Score = 39.9 bits (91), Expect = 0.66, Method: Composition-based stats. Identities = 17/154 (11%), Positives = 36/154 (23%), Gaps = 9/154 (5%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + G+GKT + A +M P ++ +A + V + + + Sbjct: 316 VCLPTGLGKTLIAAVVMYNFYRWFPQGKVVFLAPTR--------PLVDQQKAACSNICGI 367 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + + C + E + V DEA Sbjct: 368 PTEDTCTMMGSTKKDESGTRRTFWRTKRVFFCTPQTMENDINSSVCPANEVVCVVIDEAH 427 Query: 202 -GTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 + + + + S T Sbjct: 428 RAKGNHSYVGCIRMLWDRGVKFRTLALSATPGRT 461 >gi|19483918|gb|AAH25182.1| Dna2 protein [Mus musculus] Length = 800 Score = 39.9 bits (91), Expect = 0.66, Method: Composition-based stats. Identities = 29/204 (14%), Positives = 54/204 (26%), Gaps = 18/204 (8%) Query: 4 LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVD 63 + STD + L E+++ F ++ P K ++ Q + M+ V Sbjct: 321 MESTDPS--KRLRELIIDFREP-QFIAYLSSVLPHDAKDTVANILKGLNKPQRQAMKRV- 376 Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 + + G GKTT ++ L + G S++ + + + + N Sbjct: 377 ---------LLSKDYTLIVGMP-GTGKTTTICALVRILSAC--GFSVLLTSYTHSAVDNI 424 Query: 124 LWAE--VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 L L H S+ + Y + Sbjct: 425 LLKLAKFKVGFLRLGQSHKVHPDIQKFTEEEICRSRSIASLAHLEELYNSHPIVATTCMG 484 Query: 182 DTFVGPHNTHGMAVFNDEASGTPD 205 DEAS Sbjct: 485 INHPIFSRKTFDFCIVDEASQISQ 508 >gi|291386275|ref|XP_002710075.1| PREDICTED: activating signal cointegrator 1 complex subunit 3-like 1 [Oryctolagus cuniculus] Length = 2137 Score = 39.9 bits (91), Expect = 0.67, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 45/161 (27%), Gaps = 15/161 (9%) Query: 54 WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q +F + + V NS+ +F + A G GKT + +L ++ + Sbjct: 1322 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1378 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 I E + K+ L + S + S + + I Sbjct: 1379 YITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIIS---TPEKWDI 1435 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212 R + ++ H DE + Sbjct: 1436 LSRRW--KQRKNVQNIH-----LFVVDEVHLIGGENGPVLE 1469 >gi|255723341|ref|XP_002546604.1| hypothetical protein CTRG_06082 [Candida tropicalis MYA-3404] gi|240130735|gb|EER30298.1| hypothetical protein CTRG_06082 [Candida tropicalis MYA-3404] Length = 1926 Score = 39.9 bits (91), Expect = 0.67, Method: Composition-based stats. Identities = 15/125 (12%), Positives = 36/125 (28%), Gaps = 16/125 (12%) Query: 80 CAISAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTL--WAEVSKWLSMLP 136 + + G GKT + A + +W P ++ IA + ++ + W E + Sbjct: 1132 VFVGSPTGSGKT-VVAELAIWHAFNEFPSSKVVYIAPMKALVRERVDDWRE-----RICK 1185 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 + ++ + + + + R + + V Sbjct: 1186 NTAHRLVELTGDSLPSVHEVKEADIIITTPEKFDGISRNWQTRKFV-------QQVSLVI 1238 Query: 197 NDEAS 201 DE Sbjct: 1239 MDEIH 1243 >gi|226222706|ref|YP_002756813.1| DNA segregation ATPase FtsK/SpoIIIE [Listeria monocytogenes Clip81459] gi|225875168|emb|CAS03860.1| Putative DNA segregation ATPase FtsK/SpoIIIE [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 1498 Score = 39.9 bits (91), Expect = 0.67, Method: Composition-based stats. Identities = 33/328 (10%), Positives = 76/328 (23%), Gaps = 44/328 (13%) Query: 26 LSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAG 85 L NF W KPL+ ++ ++ + A+ + Sbjct: 962 LHPVNF---EEAWKEPKKPLQATIG-------LLDQPELQAQVPLTLDLTKDGHVAVFSS 1011 Query: 86 RGIGKTTLNAWMMLWLISTRPGMS------------IICIANSETQLKNTLWAE---VSK 130 G GK+T +++ L ++ + + + E V K Sbjct: 1012 PGFGKSTFLQSLVMDLARQHNPEQLHVYLLDFGTNGLLPLIDLPHVADTMMVDEVEKVQK 1071 Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190 +L + + + LS + + S + + + Sbjct: 1072 FLRICLNEIKTRKKLLSQYRVANIEQYERASGKELPNIIIVLDNYDAVKDAGLGDDF--E 1129 Query: 191 HGMAVFNDEASGTPDIINKSILGF--------FTELNPNRFWIMTSNTRRLNGWFYDIFN 242 + E + + I + + ++ Sbjct: 1130 KIITQITREGASI--GMFMIISASRHMSLRTQMATNIKQMIALYLIDKNDISSTVGRTDT 1187 Query: 243 IPLEDWKRYQIDTRTVEGIDS------GFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 E R + TV + I ++ + R G+ P+ Sbjct: 1188 PLEEYPGRALVKLETVTTFQTTLPSQGEETIQQIEGIRNEAKLMREGWQGELPESVPMIP 1247 Query: 297 IPHNYIEEAMSRE-AIDDLYAPLIMGCD 323 + E + +G D Sbjct: 1248 EKIKLADFCEWMETKEVVANGNIPIGVD 1275 >gi|150864206|ref|XP_001382938.2| DNA-directed DNA polymerase [Scheffersomyces stipitis CBS 6054] gi|149385462|gb|ABN64909.2| DNA-directed DNA polymerase [Scheffersomyces stipitis CBS 6054] Length = 1942 Score = 39.9 bits (91), Expect = 0.67, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 36/124 (29%), Gaps = 14/124 (11%) Query: 80 CAISAGRGIGKTTLNAWMMLWLIS-TRPGMSIICIANSETQLKNTLWAEVSKWLSM-LPH 137 + + G GKT + A + +W PG ++ IA + ++ V W + + Sbjct: 1145 VFVGSPTGSGKT-VVAELAIWHAFKQFPGSKVVYIAPMKALVRER----VDDWRARICKN 1199 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + ++ + + + R + + V Sbjct: 1200 TSYKLVELTGDSLPEAKEVREADIIITTPEKFDGISRNWQTRKFV-------QQVSLVIM 1252 Query: 198 DEAS 201 DE Sbjct: 1253 DEIH 1256 >gi|121708259|ref|XP_001272076.1| DNA replication helicase Dna2, putative [Aspergillus clavatus NRRL 1] gi|119400224|gb|EAW10650.1| DNA replication helicase Dna2, putative [Aspergillus clavatus NRRL 1] Length = 1679 Score = 39.9 bits (91), Expect = 0.67, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 37/120 (30%), Gaps = 7/120 (5%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM--Q 144 G GKTT A ++ G S++ + + T + N L + + +L ++ + Sbjct: 1167 GTGKTTTIAHII--RALVAQGKSVLLTSYTHTAVDNILLKIRNDNIRILRVGATAKVHPE 1224 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + + + + T + F DEAS Sbjct: 1225 VQQFVDLAAIPKTTIEELKASYEESQVVATTCLGVNHNIFNR---RIFDYCIVDEASQIT 1281 >gi|180165079|gb|ACB87135.1| polyprotein [Dengue virus 3] Length = 3390 Score = 39.9 bits (91), Expect = 0.68, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTAT-- 1721 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1722 ----------RSEHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|146422038|ref|XP_001486961.1| hypothetical protein PGUG_00338 [Meyerozyma guilliermondii ATCC 6260] gi|146388082|gb|EDK36240.1| hypothetical protein PGUG_00338 [Meyerozyma guilliermondii ATCC 6260] Length = 1043 Score = 39.9 bits (91), Expect = 0.68, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 37/125 (29%), Gaps = 10/125 (8%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 A++AGRG GK+ + + +I + S LK L+ + K L + Sbjct: 279 VALTAGRGRGKSAALGIAIA-AAVSHDYSNIFVTSPSPENLKT-LFEFIFKGFDALGYTE 336 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + ++ + + + DE Sbjct: 337 HMDYDIIQSTNPAFNKAIVRVDIKRGHRQTIQYISPNDSHVLGQAE--------LLIIDE 388 Query: 200 ASGTP 204 A+ P Sbjct: 389 AAAIP 393 >gi|78042906|ref|YP_359101.1| DEAD-box ATP dependent DNA helicase [Carboxydothermus hydrogenoformans Z-2901] gi|77995021|gb|ABB13920.1| ATP-dependent RNA helicase, DEAD box family [Carboxydothermus hydrogenoformans Z-2901] Length = 430 Score = 39.9 bits (91), Expect = 0.68, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 43/185 (23%), Gaps = 26/185 (14%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 F P Q E + + A G GKT +L I Sbjct: 21 GFEMPTPIQKEAIPLILEG------------HNLVGQAPTGTGKTAAYLLPVLQRIQRGK 68 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 ++ + + EV+K L R ++ Q G+ Sbjct: 69 KAQVLIVTPTRELALQVA-DEVAKLGKYLKVRALAVYGGQAI---------ERQIRGLRQ 118 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN----KSILGFFTELNPNR 222 I V DEA D+ ++IL T Sbjct: 119 GVEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTL 178 Query: 223 FWIMT 227 + T Sbjct: 179 LFSAT 183 >gi|71018359|ref|XP_759410.1| hypothetical protein UM03263.1 [Ustilago maydis 521] gi|46098957|gb|EAK84190.1| hypothetical protein UM03263.1 [Ustilago maydis 521] Length = 1054 Score = 39.9 bits (91), Expect = 0.68, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 49/166 (29%), Gaps = 13/166 (7%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA-EVSKWLS-MLPHRHWFEMQ 144 G+GKT M+ L+ + + +A + + W E+ ++ L W Sbjct: 468 GMGKT----IQMISLMLSDRKKPCLVVAPT---VAIMQWRNEIEQYTEPKLKVLMWHGAN 520 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG--PHNTHGMAVFNDEASG 202 A+++ S + + + + H H + DEA Sbjct: 521 RTQDLKELKAADVVLTSYAVLESSFRKQESGFRRKNEILKERSALHAVHWRRIILDEAHN 580 Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNT-RRLNGWFYDIFNIPLED 247 + + G F W ++ + G Y + D Sbjct: 581 IKERSTNTAKGAFALQGD-FRWCLSGTPLQNRVGELYSMIRFLGGD 625 >gi|238022589|ref|ZP_04603015.1| hypothetical protein GCWU000324_02497 [Kingella oralis ATCC 51147] gi|237867203|gb|EEP68245.1| hypothetical protein GCWU000324_02497 [Kingella oralis ATCC 51147] Length = 759 Score = 39.9 bits (91), Expect = 0.68, Method: Composition-based stats. Identities = 22/162 (13%), Positives = 43/162 (26%), Gaps = 13/162 (8%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 +++ G GKT + L +I + + ++ AE K L Sbjct: 261 SLTVPTGGGKTFTSMAFALEHAKAHGLRRVIYVIPFTSIIEQNA-AEFRKAFGALGEAAV 319 Query: 141 FEMQSLSLHPS-GWYAELLEQSMGIDSKHYTITCRTYS-------EERPDTFVGPHNTHG 192 E S + + ++ + T +R HN G Sbjct: 320 LEHHSSFDDARLQGENSKDKLRLASENWDMPVVVTTAVQFFESLFADRSSRCRKLHNISG 379 Query: 193 MAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNT 230 + DEA P I +++ + + Sbjct: 380 SVIILDEAQLLPLNLLRPIMQAVKELARNYGCSVVLCTATQP 421 >gi|209809828|ref|YP_002265367.1| putative exported ATPase protein [Aliivibrio salmonicida LFI1238] gi|208011391|emb|CAQ81856.1| putative exported ATPase protein [Aliivibrio salmonicida LFI1238] Length = 717 Score = 39.9 bits (91), Expect = 0.68, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 44/161 (27%), Gaps = 32/161 (19%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 I+A RG GK++ + L+ + ++I A + Sbjct: 199 LIITADRGRGKSSAIGIAIAELVLSHK-LTIAITAPQRASVDEI---------------- 241 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH-GMAVFND 198 F + G E + ++ I+ H V D Sbjct: 242 -FSHAARVSIQLGMPVEHNKNTLIINGSSILYIAP---------DELVRGEHLVDVVCVD 291 Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239 EA+ P +L +E + T N G ++ Sbjct: 292 EAAAIP----APMLLSLSEKYSRMIFSTTINGYEGTGRGFE 328 >gi|162456487|ref|YP_001618854.1| putative helicase [Sorangium cellulosum 'So ce 56'] gi|161167069|emb|CAN98374.1| putative helicase [Sorangium cellulosum 'So ce 56'] Length = 848 Score = 39.9 bits (91), Expect = 0.68, Method: Composition-based stats. Identities = 22/199 (11%), Positives = 54/199 (27%), Gaps = 8/199 (4%) Query: 34 RFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93 + W + P Q + + + ++ I G GKT Sbjct: 8 FYKKWSLPECRDYPQEPPAAHQAKALGELGKWYAKQGKSAGAGILVL----PTGGGKTFT 63 Query: 94 NAWMMLWLISTRPGMSIICIANSETQLKNTL-WAEVSKWLSMLPHRHWFEMQSLSLHPSG 152 + + G ++ +A++ L+ + ++ R ++ +S Sbjct: 64 AVRFLAEGPLS-DGYKVLWLAHTHHLLEQAFHCFRPGRIGAIREPRCELRLRVVSGTEGH 122 Query: 153 WYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT-HGMAVFNDEASGTPDIINKSI 211 + +E + + + P+ + V DEA P + + Sbjct: 123 FPPRYVEPTDDVVIGTLQTIAIAVRDGLPNMKEFLKAAGKKLFVVFDEAHHAPAPSYRKL 182 Query: 212 LGFFTELNPNRFWIMTSNT 230 L +T+ Sbjct: 183 LQGLQAEGAPVL-GLTATP 200 >gi|308172829|ref|YP_003919534.1| phage protein [Bacillus amyloliquefaciens DSM 7] gi|307605693|emb|CBI42064.1| phage uncharacterized protein [Bacillus amyloliquefaciens DSM 7] Length = 564 Score = 39.9 bits (91), Expect = 0.69, Method: Composition-based stats. Identities = 24/202 (11%), Positives = 60/202 (29%), Gaps = 13/202 (6%) Query: 5 ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWG----IKGKPLEHFSQ--PHRWQLEF 58 I +K + EL ++ + F + G + + + PH + Sbjct: 22 IDMFRKNKAELIKLKRVHRAEVDIAYFTYEYLSDGLNPENEDNVVRNSDDGTPHDGIEDI 81 Query: 59 MEAVDVHCHSNVNNSNPTI-FKCAISAGRGIGKTTLNAWMM-LWLISTRPGMSIICIANS 116 + + + + AI+A RG K+ + + + L + R I+ I+ + Sbjct: 82 AKIHEEFFELCDYVNEEKRNARLAIAAARGHSKSGMFSNALPLHQAAYRKRKYILVISET 141 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 ++L ++ W++ + + + + + I + Sbjct: 142 -----DSLSKKLIGWVNKQMKFNGKLREDFGPMMHESASRNEKDNEEAFITTTNILIESS 196 Query: 177 SEERPDTFVGPHNTHGMAVFND 198 S + V D Sbjct: 197 SSGKQLRGKRHGAVRPDLVIID 218 >gi|255083352|ref|XP_002504662.1| predicted protein [Micromonas sp. RCC299] gi|226519930|gb|ACO65920.1| predicted protein [Micromonas sp. RCC299] Length = 462 Score = 39.9 bits (91), Expect = 0.69, Method: Composition-based stats. Identities = 37/340 (10%), Positives = 79/340 (23%), Gaps = 53/340 (15%) Query: 32 VMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR----- 86 + P G P+ FS+ + + + A + + + +G Sbjct: 36 AKKAAPDGTNFTPVAEFSE-AGFSKDVLAATANFKKPSPIQAQSWP---IVLSGHDMVGI 91 Query: 87 ---GIGKTTLNAWMMLWLISTRPGM-----SIICIANSETQLKNTLWAEVSKWLSMLPHR 138 G GKT L I +P + +A + + T + R Sbjct: 92 AATGSGKTMAFGLPALMQILAQPKCAPGSPQCLVLAPTRELAQQTA-KVFEDAGTACGVR 150 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 ++ M I + D Sbjct: 151 CVCVYGGAPKWEQ-------KKLMQQGGGCAVIVATPGRLRDFMNDGDVKLDKVTMLVLD 203 Query: 199 EASGTPDIINKS---ILGFFTELNPNRFWIMTSNTRRLNGWFYDIF-----------NIP 244 EA D+ + + T + + + G + + Sbjct: 204 EADRMLDLGFEPEIREIAGKTRADRQTVMFSATWPTSIQGLAAEFMCNPVKVRIGAEGLK 263 Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG----------QFPQQEVN 294 ++ D+ + G V R + + +++ Sbjct: 264 ASHSVTQVVEVVEPNEKDAHLARVLKKYLGGKKPVPRTLVFALYKKECARLHENLRRQNW 323 Query: 295 NFIPHNYIEEAMSREAIDDLYA----PLIMGCDIAGEGGD 330 + RE + + PL++ D+A G D Sbjct: 324 QAACIHGDMSQRDRELSVEAFKSGSSPLLIATDVAARGLD 363 >gi|54303269|ref|YP_133262.1| hypothetical protein PBPRB1602 [Photobacterium profundum SS9] gi|46916699|emb|CAG23462.1| hypothetical protein trbB [Photobacterium profundum SS9] Length = 302 Score = 39.9 bits (91), Expect = 0.69, Method: Composition-based stats. Identities = 15/122 (12%), Positives = 31/122 (25%), Gaps = 11/122 (9%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET---QLKNTLWAEVSKWLSM 134 I G G GKTTL ++ + P +I + ++ Q +N + Sbjct: 133 RNIVIVGGTGSGKTTLANAVLAKIAECFPNERLIILEDTNEIQCQARN------HVIMRT 186 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 L ++ + + ++ P + H Sbjct: 187 CDKAGISMQTLLRATLRYRPDRIIVGEVRG--GEALDLLKAWNTGHPGGILTIHADSARL 244 Query: 195 VF 196 Sbjct: 245 GL 246 >gi|302337590|ref|YP_003802796.1| CRISPR-associated helicase Cas3 [Spirochaeta smaragdinae DSM 11293] gi|301634775|gb|ADK80202.1| CRISPR-associated helicase Cas3 [Spirochaeta smaragdinae DSM 11293] Length = 741 Score = 39.9 bits (91), Expect = 0.69, Method: Composition-based stats. Identities = 20/185 (10%), Positives = 44/185 (23%), Gaps = 12/185 (6%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + C N +++ G GKT + + II + + + Sbjct: 229 DILDWCRKAANLPQGIY---SLTVPTGGGKTKSSVSFAIEHCIRHELKRIIYVIPYTSII 285 Query: 121 KN--TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 ++ + ++L H E + + + + ++ Sbjct: 286 SQNAGVFRGIFGVDNVLEHHSNLEPEHENARNRLLCENWDAPIVVTTN---IQFFESFYS 342 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDI----INKSILGFFTELNPNRFWIMTSNTRRLN 234 R + HN + DEA P + I + Sbjct: 343 SRSSSCRKLHNVADSVIIFDEAQMLPSEFLKPCLEIISELVDNYGCTAVLCTATQPTLNK 402 Query: 235 GWFYD 239 F Sbjct: 403 ERFLK 407 >gi|145637060|ref|ZP_01792723.1| DNA helicase II [Haemophilus influenzae PittHH] gi|145269714|gb|EDK09654.1| DNA helicase II [Haemophilus influenzae PittHH] Length = 726 Score = 39.9 bits (91), Expect = 0.69, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 80/302 (26%), Gaps = 29/302 (9%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIA 114 E ++ ++ V + AG G GKT + + WLI+ SI+ + Sbjct: 5 ELLDGLNDKQREAVAAPLGNH---LVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 + S H+ + + +G+ + Sbjct: 62 FTNKAAAEMRHRIQSTLAKHAQHQLFGMWIGTFHSIAHRLLRAHHLDIGLPQDFQILDSE 121 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 + HN DE + P + + + Sbjct: 122 -DQLRLIKRLLKLHN-------FDEKAF-PPKQACWYINNKKDEGLR--------PNDIE 164 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294 + ++ +K YQ +D + +F V+ Sbjct: 165 DFNDRQEREWIKIYKIYQDTCDRAGLVDFAELLIRAYELFEKKPLILQRYQQRFQHILVD 224 Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354 F N I+ + + +++ D D++ + RG IE+I + Sbjct: 225 EFQDTNKIQYK-WIKILAGKTGKVMIVGD-----DDQS-IYGWRGAQIENIQKFLKDFKA 277 Query: 355 ET 356 ET Sbjct: 278 ET 279 >gi|145627832|ref|ZP_01783633.1| DNA helicase II [Haemophilus influenzae 22.1-21] gi|145639293|ref|ZP_01794899.1| DNA helicase II [Haemophilus influenzae PittII] gi|144979607|gb|EDJ89266.1| DNA helicase II [Haemophilus influenzae 22.1-21] gi|145271596|gb|EDK11507.1| DNA helicase II [Haemophilus influenzae PittII] Length = 726 Score = 39.9 bits (91), Expect = 0.69, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 80/302 (26%), Gaps = 29/302 (9%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIA 114 E ++ ++ V + AG G GKT + + WLI+ SI+ + Sbjct: 5 ELLDGLNDKQREAVAAPLGNH---LVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 + S H+ + + +G+ + Sbjct: 62 FTNKAAAEMRHRIQSTLAKHAQHQLFGMWIGTFHSIAHRLLRAHHLDIGLPQDFQILDSE 121 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 + HN DE + P + + + Sbjct: 122 -DQLRLIKRLLKLHN-------FDEKAF-PPKQACWYINNKKDEGLR--------PNDIE 164 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294 + ++ +K YQ +D + +F V+ Sbjct: 165 DFNDRQEREWIKIYKIYQDTCDRAGLVDFAELLIRAYELFEKKPLILQRYQQRFQHILVD 224 Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354 F N I+ + + +++ D D++ + RG IE+I + Sbjct: 225 EFQDTNKIQYK-WIKILAGKTGKVMIVGD-----DDQS-IYGWRGAQIENIQKFLKDFKA 277 Query: 355 ET 356 ET Sbjct: 278 ET 279 >gi|110431906|gb|ABG73585.1| polyprotein [Dengue virus 3] Length = 3390 Score = 39.9 bits (91), Expect = 0.69, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPTIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGKEIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|309751169|gb|ADO81153.1| DNA helicase II [Haemophilus influenzae R2866] Length = 727 Score = 39.9 bits (91), Expect = 0.69, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 80/302 (26%), Gaps = 29/302 (9%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIA 114 E ++ ++ V + AG G GKT + + WLI+ SI+ + Sbjct: 6 ELLDGLNDKQREAVAAPLGNH---LVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 62 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 + S H+ + + +G+ + Sbjct: 63 FTNKAAAEMRHRIQSTLAKHAQHQLFGMWIGTFHSIAHRLLRAHHLDIGLPQDFQILDSE 122 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 + HN DE + P + + + Sbjct: 123 -DQLRLIKRLLKLHN-------FDEKAF-PPKQACWYINNKKDEGLR--------PNDIE 165 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294 + ++ +K YQ +D + +F V+ Sbjct: 166 DFNDRQEREWIKIYKIYQDTCDRAGLVDFAELLIRAYELFEKKPLILQRYQQRFQHILVD 225 Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354 F N I+ + + +++ D D++ + RG IE+I + Sbjct: 226 EFQDTNKIQYK-WIKILAGKTGKVMIVGD-----DDQS-IYGWRGAQIENIQKFLKDFKA 278 Query: 355 ET 356 ET Sbjct: 279 ET 280 >gi|328554891|gb|AEB25383.1| hypothetical protein BAMTA208_16155 [Bacillus amyloliquefaciens TA208] Length = 584 Score = 39.9 bits (91), Expect = 0.70, Method: Composition-based stats. Identities = 24/202 (11%), Positives = 60/202 (29%), Gaps = 13/202 (6%) Query: 5 ISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWG----IKGKPLEHFSQ--PHRWQLEF 58 I +K + EL ++ + F + G + + + PH + Sbjct: 42 IDMFRKNKAELIKLKRVHRAEVDIAYFTYEYLSDGLNPENEDNVVRNSDDGTPHDGIEDI 101 Query: 59 MEAVDVHCHSNVNNSNPTI-FKCAISAGRGIGKTTLNAWMM-LWLISTRPGMSIICIANS 116 + + + + AI+A RG K+ + + + L + R I+ I+ + Sbjct: 102 AKIHEEFFELCDYVNEEKRNARLAIAAARGHSKSGMFSNALPLHQAAYRKRKYILVISET 161 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 ++L ++ W++ + + + + + I + Sbjct: 162 -----DSLSKKLIGWVNKQMKFNAKLREDFGPMMHESASRNEKDNEEAFITTTNILIESS 216 Query: 177 SEERPDTFVGPHNTHGMAVFND 198 S + V D Sbjct: 217 SSGKQLRGKRHGAVRPDLVIID 238 >gi|283781038|ref|YP_003371793.1| ABC transporter [Pirellula staleyi DSM 6068] gi|283439491|gb|ADB17933.1| ABC transporter related protein [Pirellula staleyi DSM 6068] Length = 645 Score = 39.9 bits (91), Expect = 0.70, Method: Composition-based stats. Identities = 24/202 (11%), Positives = 53/202 (26%), Gaps = 15/202 (7%) Query: 60 EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL-------ISTRPGMSIIC 112 ++ + P K AI G GK+TL + + + + ++ + Sbjct: 431 YDPADPILKGIDLTIPFGEKLAIVGPNGGGKSTLISLLCRFYDPQQGKVLLDGTPLTEMA 490 Query: 113 IANSETQL-----KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 + + +L + L+ + + + + + E + G Sbjct: 491 LEDLRGRLALVSQQTELFNDSVMYNIRYGRLDATDAEVVEAARKAHAHEFISAMSGGYQT 550 Query: 168 HYTITCRTYSEERPDTFVGPHN--THGMAVFNDEA-SGTPDIINKSILGFFTELNPNRFW 224 + S + + DEA S I E +R Sbjct: 551 VVGQNGQRLSGGQRQRIALARAILRDPEILILDEATSQIDVASESLIHDTLAEFGRSRTV 610 Query: 225 IMTSNTRRLNGWFYDIFNIPLE 246 IM ++ I + Sbjct: 611 IMITHRESTLDLADRIIEVSRG 632 >gi|219666700|ref|YP_002457135.1| superfamily I DNA/RNA helicase [Desulfitobacterium hafniense DCB-2] gi|219536960|gb|ACL18699.1| superfamily I DNA/RNA helicase [Desulfitobacterium hafniense DCB-2] Length = 1584 Score = 39.9 bits (91), Expect = 0.70, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 39/127 (30%), Gaps = 9/127 (7%) Query: 87 GIGKTTLNAWMMLWLISTRPGM-SIICIANSETQLKNTLWAEVSKWLSMLPHRHW---FE 142 G GKTT A ++ I + ++ + + + + + W F Sbjct: 1128 GTGKTTYLAREIILPIMQKANALKVLVLTPTNKSADVLVRRLMEVMGVDHSYNDWLVRFG 1187 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITC---RTYSEERPDTFVGPHNT--HGMAVFN 197 + ++ + S++ T+T Y PD H + Sbjct: 1188 ATNDTIIEQSGIFRDKTFDIRTFSRNVTVTTIARFPYDYFLPDENTRLHLNALKWDYIII 1247 Query: 198 DEASGTP 204 DEAS P Sbjct: 1248 DEASMIP 1254 >gi|189235557|ref|XP_968432.2| PREDICTED: similar to predicted protein [Tribolium castaneum] Length = 723 Score = 39.9 bits (91), Expect = 0.70, Method: Composition-based stats. Identities = 27/212 (12%), Positives = 61/212 (28%), Gaps = 24/212 (11%) Query: 24 CVLSFKNFVMRFFPWGIK-GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82 + +F P IK G + F +P Q + + F + Sbjct: 19 ILDENISFASLLLPDDIKQGLSVSGFKKPSPIQFKAI------------PLGRCGFDLIV 66 Query: 83 SAGRGIGKTTLNAWMMLWLI-STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + G GKT + + + L + + + + ++ + + E++ + + Sbjct: 67 KSKSGTGKTLVFSTIALETVNTAKDHLQVLILVPT---------REIAVQIEDVLRSVGC 117 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + L + L E + SK + + DEA Sbjct: 118 HVNGLKIESFIGGRPL-EDDLKKSSKCHIAVGAPGRVKHLLKMGALTTNLVKLFVLDEAD 176 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233 + +S + P R ++ S+ Sbjct: 177 KLMEESFQSDINEIYNSLPPRKQMIVSSATYP 208 >gi|270004341|gb|EFA00789.1| hypothetical protein TcasGA2_TC003675 [Tribolium castaneum] Length = 688 Score = 39.9 bits (91), Expect = 0.70, Method: Composition-based stats. Identities = 27/212 (12%), Positives = 61/212 (28%), Gaps = 24/212 (11%) Query: 24 CVLSFKNFVMRFFPWGIK-GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82 + +F P IK G + F +P Q + + F + Sbjct: 19 ILDENISFASLLLPDDIKQGLSVSGFKKPSPIQFKAI------------PLGRCGFDLIV 66 Query: 83 SAGRGIGKTTLNAWMMLWLI-STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 + G GKT + + + L + + + + ++ + + E++ + + Sbjct: 67 KSKSGTGKTLVFSTIALETVNTAKDHLQVLILVPT---------REIAVQIEDVLRSVGC 117 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + L + L E + SK + + DEA Sbjct: 118 HVNGLKIESFIGGRPL-EDDLKKSSKCHIAVGAPGRVKHLLKMGALTTNLVKLFVLDEAD 176 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRL 233 + +S + P R ++ S+ Sbjct: 177 KLMEESFQSDINEIYNSLPPRKQMIVSSATYP 208 >gi|126173085|ref|YP_001049234.1| ATP-dependent RNA helicase SrmB [Shewanella baltica OS155] gi|125996290|gb|ABN60365.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155] Length = 419 Score = 39.9 bits (91), Expect = 0.70, Method: Composition-based stats. Identities = 28/233 (12%), Positives = 48/233 (20%), Gaps = 22/233 (9%) Query: 57 EFMEAVDVH----CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM---- 108 E + A+ H A G GKT L + P Sbjct: 14 ESLNAMGHHSPTTIQQETIPYALEQRDILARAPTGTGKTASFLLPSLQHLIDFPRRFAGQ 73 Query: 109 -SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 I+ + + E++ + H Q L + Q + K Sbjct: 74 ARILILTPT---------RELASQIHRYAC-HLATGQGLDIAIVTGGVPYGPQEEALAGK 123 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227 + + + DEA D+ S++ R M Sbjct: 124 VDILVATPGRLMEYLDKGNFNAQEVDILIIDEADRMLDMGFSSVVQAIAIEAQGRKQNML 183 Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280 + G L D + + I Sbjct: 184 FSATLEGGGVQRFAREVLNDPIEIDV---EAPRSEKAKIHQWIHLADDKEHKF 233 >gi|323940184|gb|EGB36378.1| DEAD/DEAH box helicase [Escherichia coli E482] Length = 726 Score = 39.9 bits (91), Expect = 0.70, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 62/208 (29%), Gaps = 36/208 (17%) Query: 24 CVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS 83 SF F+ R F + + E + + + + + AIS Sbjct: 119 IPESFYAFLKRSFIENENKIKISN--------KEI--TLTNFQKRVWESLHSNVPQ-AIS 167 Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 A GK+ L M+ I + S I IA + + + + LP+++ + Sbjct: 168 APTSAGKSFLVVEMLANGIISGELNSAIYIAPTRALVNEITQKFI---IKTLPYQNEVRV 224 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 S+ + + +K + + + D F V DEA Sbjct: 225 TSIPTINNEY------------NKQIFVLTQERLQVLLDNFE----EKIDLVVIDEAQSI 268 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTR 231 D I G + I T N Sbjct: 269 SDE----IRGMILQ--DCLDKISTQNPN 290 >gi|283853557|ref|ZP_06370796.1| PhoH family protein [Desulfovibrio sp. FW1012B] gi|283571056|gb|EFC19077.1| PhoH family protein [Desulfovibrio sp. FW1012B] Length = 328 Score = 39.9 bits (91), Expect = 0.70, Method: Composition-based stats. Identities = 30/203 (14%), Positives = 54/203 (26%), Gaps = 23/203 (11%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT L M + + R +I + + L ++ + Sbjct: 142 GTGKTYLAVAMGVGFLLERRVKRLILTRPA------------VEAGEKLGFLPGDMVEKV 189 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + + Y L + + T E P F+ + + DEA T Sbjct: 190 NPYLRPLYDALNDMLDFRKVREMLDTGVI--EVAPLAFMRGRTLNDALIILDEAQNTTPE 247 Query: 207 INKSILGFFTELNPNRFWIMTSN------TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 K T L ++T + R + + + + Sbjct: 248 QMKMF---LTRLGLASKAVVTGDVTQIDLPPRSVSGLVEAKRVLDGVHGIDFVSFTDADV 304 Query: 261 IDSGFHEGIISRYGLDSDVARIE 283 I I+ Y DS + E Sbjct: 305 IRHPLVGRIVQAYERDSRQGKTE 327 >gi|260910277|ref|ZP_05916953.1| type I restriction-modification system [Prevotella sp. oral taxon 472 str. F0295] gi|260635601|gb|EEX53615.1| type I restriction-modification system [Prevotella sp. oral taxon 472 str. F0295] Length = 763 Score = 39.9 bits (91), Expect = 0.70, Method: Composition-based stats. Identities = 42/307 (13%), Positives = 93/307 (30%), Gaps = 43/307 (14%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 + +P +Q +E + + I G GKT ++ L +T Sbjct: 158 YTYEPRYYQRIAVERTIEAIAKGKD-------RVLIVMATGTGKTITAFQIIHRLKATGK 210 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 ++ +A+ + T+ + + ++ + S Y +L+ +G++ Sbjct: 211 KKKVLYLADRNILIDQTMAQDFKPFKKVMTKVQGASIDSAYEVYMALYHQLVSNEVGME- 269 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226 D F T + DE + + N M Sbjct: 270 ---------------DPFKQVQPTFFDLIIVDECHRGSAKDDSAWRKVLEYFNTATQIGM 314 Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 T+ + G +D +GI D +A + Sbjct: 315 TATPKAETG--------------ANNLDYFGEPVFTYSLLQGI-----QDGFLAPYRVTN 355 Query: 287 QFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346 + ++ F P + ++ + R+ LY +G DIA + +V R +++ I Sbjct: 356 SYISIDLQGFKPDDDEKDLLGRDIAQRLYERKDIGRDIAFTKR-REIVAKRITKMLKQIG 414 Query: 347 DWSAKLI 353 + ++ Sbjct: 415 RMTKTIV 421 >gi|187957728|gb|AAI50786.1| Fanconi anemia, complementation group M [Mus musculus] Length = 2021 Score = 39.9 bits (91), Expect = 0.70, Method: Composition-based stats. Identities = 32/250 (12%), Positives = 72/250 (28%), Gaps = 19/250 (7%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + G+GKT + A +M P ++ +A ++ + + A +P Sbjct: 93 CNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQQMEACFHVM--GIPQ 150 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 H EM + + E+ + + P T H + Sbjct: 151 SHMAEMTGSTQ--AVNRKEIWSSRRVLFLTPQVMVNDLTRGAVPAT-------HVKCLVV 201 Query: 198 DEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256 DEA + ++ + + + S T + I + ++ + Sbjct: 202 DEAHKALGNYAYCQVVRELVKYTTHFRILALSATP-GSDIKAVQQVITNLLIGKIELRSE 260 Query: 257 TVEGI---DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 I + + A + Q + ++ I N + M R+ + Sbjct: 261 ESPDILPYSHERRVEKLVVPLGEELGAIQKTYIQILETFASSLIHRNVL---MKRDIPNL 317 Query: 314 LYAPLIMGCD 323 +I+ D Sbjct: 318 TKYQIILARD 327 >gi|148704700|gb|EDL36647.1| mCG118968 [Mus musculus] Length = 1370 Score = 39.9 bits (91), Expect = 0.70, Method: Composition-based stats. Identities = 32/250 (12%), Positives = 72/250 (28%), Gaps = 19/250 (7%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + G+GKT + A +M P ++ +A ++ + + A +P Sbjct: 61 CNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQQMEACFHVM--GIPQ 118 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 H EM + + E+ + + P T H + Sbjct: 119 SHMAEMTGSTQ--AVNRKEIWSSRRVLFLTPQVMVNDLTRGAVPAT-------HVKCLVV 169 Query: 198 DEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256 DEA + ++ + + + S T + I + ++ + Sbjct: 170 DEAHKALGNYAYCQVVRELVKYTTHFRILALSATP-GSDIKAVQQVITNLLIGKIELRSE 228 Query: 257 TVEGI---DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 I + + A + Q + ++ I N + M R+ + Sbjct: 229 ESPDILPYSHERRVEKLVVPLGEELGAIQKTYIQILETFASSLIHRNVL---MKRDIPNL 285 Query: 314 LYAPLIMGCD 323 +I+ D Sbjct: 286 TKYQIILARD 295 >gi|26343661|dbj|BAC35487.1| unnamed protein product [Mus musculus] Length = 651 Score = 39.9 bits (91), Expect = 0.70, Method: Composition-based stats. Identities = 32/250 (12%), Positives = 72/250 (28%), Gaps = 19/250 (7%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + G+GKT + A +M P ++ +A ++ + + A +P Sbjct: 93 CNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQQMEACFHVM--GIPQ 150 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 H EM + + E+ + + P T H + Sbjct: 151 SHMAEMTGSTQ--AVNRKEIWSSRRVLFLTPQVMVNDLTRGAVPAT-------HVKCLVV 201 Query: 198 DEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256 DEA + ++ + + + S T + I + ++ + Sbjct: 202 DEAHKALGNYAYCQVVRELVKYTTHFRILALSATP-GSDIKAVQQVITNLLIGKIELRSE 260 Query: 257 TVEGI---DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 I + + A + Q + ++ I N + M R+ + Sbjct: 261 ESPDILPYSHERRVEKLVVPLGEELGAIQKTYIQILETFASSLIHRNVL---MKRDIPNL 317 Query: 314 LYAPLIMGCD 323 +I+ D Sbjct: 318 TKYQIILARD 327 >gi|26352047|dbj|BAC39660.1| unnamed protein product [Mus musculus] Length = 433 Score = 39.9 bits (91), Expect = 0.70, Method: Composition-based stats. Identities = 32/250 (12%), Positives = 72/250 (28%), Gaps = 19/250 (7%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + G+GKT + A +M P ++ +A ++ + + A +P Sbjct: 93 CNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQQMEACFHVM--GIPQ 150 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 H EM + + E+ + + P T H + Sbjct: 151 SHMAEMTGSTQ--AVNRKEIWSSRRVLFLTPQVMVNDLTRGAVPAT-------HVKCLVV 201 Query: 198 DEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256 DEA + ++ + + + S T + I + ++ + Sbjct: 202 DEAHKALGNYAYCQVVRELVKYTTHFRILALSATP-GSDIKAVQQVITNLLIGKIELRSE 260 Query: 257 TVEGI---DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 I + + A + Q + ++ I N + M R+ + Sbjct: 261 ESPDILPYSHERRVEKLVVPLGEELGAIQKTYIQILETFASSLIHRNVL---MKRDIPNL 317 Query: 314 LYAPLIMGCD 323 +I+ D Sbjct: 318 TKYQIILARD 327 >gi|26333531|dbj|BAC30483.1| unnamed protein product [Mus musculus] Length = 519 Score = 39.9 bits (91), Expect = 0.70, Method: Composition-based stats. Identities = 32/250 (12%), Positives = 72/250 (28%), Gaps = 19/250 (7%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + G+GKT + A +M P ++ +A ++ + + A +P Sbjct: 93 CNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQQMEACFHVM--GIPQ 150 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 H EM + + E+ + + P T H + Sbjct: 151 SHMAEMTGSTQ--AVNRKEIWSSRRVLFLTPQVMVNDLTRGAVPAT-------HVKCLVV 201 Query: 198 DEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256 DEA + ++ + + + S T + I + ++ + Sbjct: 202 DEAHKALGNYAYCQVVRELVKYTTHFRILALSATP-GSDIKAVQQVITNLLIGKIELRSE 260 Query: 257 TVEGI---DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 I + + A + Q + ++ I N + M R+ + Sbjct: 261 ESPDILPYSHERRVEKLVVPLGEELGAIQKTYIQILETFASSLIHRNVL---MKRDIPNL 317 Query: 314 LYAPLIMGCD 323 +I+ D Sbjct: 318 TKYQIILARD 327 >gi|74197309|dbj|BAC34178.2| unnamed protein product [Mus musculus] gi|74217148|dbj|BAC39257.2| unnamed protein product [Mus musculus] Length = 1393 Score = 39.9 bits (91), Expect = 0.70, Method: Composition-based stats. Identities = 32/250 (12%), Positives = 72/250 (28%), Gaps = 19/250 (7%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + G+GKT + A +M P ++ +A ++ + + A +P Sbjct: 93 CNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQQMEACFHVM--GIPQ 150 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 H EM + + E+ + + P T H + Sbjct: 151 SHMAEMTGSTQ--AVNRKEIWSSRRVLFLTPQVMVNDLTRGAVPAT-------HVKCLVV 201 Query: 198 DEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256 DEA + ++ + + + S T + I + ++ + Sbjct: 202 DEAHKALGNYAYCQVVRELVKYTTHFRILALSATP-GSDIKAVQQVITNLLIGKIELRSE 260 Query: 257 TVEGI---DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 I + + A + Q + ++ I N + M R+ + Sbjct: 261 ESPDILPYSHERRVEKLVVPLGEELGAIQKTYIQILETFASSLIHRNVL---MKRDIPNL 317 Query: 314 LYAPLIMGCD 323 +I+ D Sbjct: 318 TKYQIILARD 327 >gi|54112418|ref|NP_849243.2| Fanconi anemia group M protein homolog [Mus musculus] gi|78099255|sp|Q8BGE5|FANCM_MOUSE RecName: Full=Fanconi anemia group M protein homolog; Short=Protein FACM; AltName: Full=ATP-dependent RNA helicase FANCM Length = 2021 Score = 39.9 bits (91), Expect = 0.70, Method: Composition-based stats. Identities = 32/250 (12%), Positives = 72/250 (28%), Gaps = 19/250 (7%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + G+GKT + A +M P ++ +A ++ + + A +P Sbjct: 93 CNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQQMEACFHVM--GIPQ 150 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 H EM + + E+ + + P T H + Sbjct: 151 SHMAEMTGSTQ--AVNRKEIWSSRRVLFLTPQVMVNDLTRGAVPAT-------HVKCLVV 201 Query: 198 DEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256 DEA + ++ + + + S T + I + ++ + Sbjct: 202 DEAHKALGNYAYCQVVRELVKYTTHFRILALSATP-GSDIKAVQQVITNLLIGKIELRSE 260 Query: 257 TVEGI---DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 I + + A + Q + ++ I N + M R+ + Sbjct: 261 ESPDILPYSHERRVEKLVVPLGEELGAIQKTYIQILETFASSLIHRNVL---MKRDIPNL 317 Query: 314 LYAPLIMGCD 323 +I+ D Sbjct: 318 TKYQIILARD 327 >gi|329954246|ref|ZP_08295340.1| phage terminase, large subunit, PBSX family [Bacteroides clarus YIT 12056] gi|328527952|gb|EGF54938.1| phage terminase, large subunit, PBSX family [Bacteroides clarus YIT 12056] Length = 438 Score = 39.9 bits (91), Expect = 0.71, Method: Composition-based stats. Identities = 30/269 (11%), Positives = 77/269 (28%), Gaps = 39/269 (14%) Query: 90 KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLH 149 K+ L ++ P N+ + ++ K + + ++ Sbjct: 34 KSWLGCEWLMQCCHYLPETRWFAGRNNLKDSRASIAVTFVKVANSHGYPYYHLTNDG--- 90 Query: 150 PSGWYAELLEQSMGIDSKHYTITC-RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208 + D+ I TY + + + + +EA + Sbjct: 91 ------------IKFDNGSEIIFLDLTYYPYKDPMYERFGSLEFTGGWIEEAGQVNRLAF 138 Query: 209 KSILGFFTEL-----NPNRFWIMTSNTRRLNGWFYDIFNIP------LEDWKRYQIDTRT 257 + + N ++T N ++ W YD F P + + Q + Sbjct: 139 EVLQTRIGRHLNDVYNVPGKILITCNPKK--NWLYDKFYKPWKEHKLKDGYAFVQALVQD 196 Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLY-A 316 + + + + V + + + + + P + + + + Sbjct: 197 NPFATEDYINTLKNT---NDKVTKERLYFGNWEYDND---PAVLCDYDAICDLFVNEHVQ 250 Query: 317 PLIMGC---DIAGEGGDKTVVVFRRGNII 342 P+ + D+A +G D+ V GN+ Sbjct: 251 PVGLSTGSSDLAMKGRDRFVSGHWIGNVC 279 >gi|319411618|emb|CBQ73662.1| probable RAD16-nucleotide excision repair protein [Sporisorium reilianum] Length = 1070 Score = 39.9 bits (91), Expect = 0.71, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 48/166 (28%), Gaps = 13/166 (7%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA-EVSKWLS-MLPHRHWFEMQ 144 G+GKT M+ L+ + + +A + + W E+ K+ L W Sbjct: 484 GMGKT----IQMISLMLSDRKKPCLVVAPT---VAIMQWRNEIEKYTEPQLKVLLWHGPN 536 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD--TFVGPHNTHGMAVFNDEASG 202 +++ S + + + + H H + DEA Sbjct: 537 RTQNLKELKAVDVVLTSYAVLESSFRKQESGFRRKNEILKEKSALHAVHWRRIILDEAHN 596 Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNT-RRLNGWFYDIFNIPLED 247 + + G F W ++ + G Y + D Sbjct: 597 IKERSTNTAKGAFALQGD-FRWCLSGTPLQNRVGELYSMIRFLGGD 641 >gi|306821434|ref|ZP_07455038.1| conserved hypothetical protein [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550509|gb|EFM38496.1| conserved hypothetical protein [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 1587 Score = 39.9 bits (91), Expect = 0.71, Method: Composition-based stats. Identities = 25/193 (12%), Positives = 64/193 (33%), Gaps = 11/193 (5%) Query: 28 FKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRG 87 FK+F++++F + LE P ++ E E + +N+ N + AG G Sbjct: 1000 FKDFLIKYFD-KAEQVDLERNISPEKY-KELFEELSPKQKEIINDDNSQF--ITVLAGAG 1055 Query: 88 IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147 GKT + + L+ + + + ++ T + + + ++ +F + + Sbjct: 1056 SGKTKVLVHKLASLLLMEDVKAEQLLMLTFSRAAATEFK--KRLIELIGDGAYF-VDIKT 1112 Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207 H + ++ + ++ + + DEA + Sbjct: 1113 FHSYCFDILGQRGTVEKSENIVSKAVDEILSKKVEQGQV----TKSVIVIDEAQDMDEDS 1168 Query: 208 NKSILGFFTELNP 220 K + + Sbjct: 1169 FKLLEAIIAANDG 1181 >gi|154335334|ref|XP_001563907.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 1080 Score = 39.9 bits (91), Expect = 0.71, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 44/125 (35%), Gaps = 10/125 (8%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 C ++AGRG GK+ MM+ + +I+C A + + TL+ + L L +R Sbjct: 305 CVVTAGRGRGKSAAL-GMMVAGAIAQGYSNIMCTAPTPENV-QTLFEFAIRGLKELGYRE 362 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + ++L + + ++ + + DE Sbjct: 363 RTDFEALQGVSEEFAKCFIRINVFREHRQTLQFVSAT--------DTAKFAQAEVCVIDE 414 Query: 200 ASGTP 204 A+ P Sbjct: 415 AAALP 419 >gi|115756213|ref|XP_001201651.1| PREDICTED: similar to helicase, partial [Strongylocentrotus purpuratus] gi|115937753|ref|XP_796771.2| PREDICTED: similar to helicase, partial [Strongylocentrotus purpuratus] Length = 633 Score = 39.9 bits (91), Expect = 0.71, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 46/150 (30%), Gaps = 6/150 (4%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 M ++ + + + I G GKTT ++ L++ GMS++ + + Sbjct: 324 IMRDLNEDQRAAIKAVLRSQDYTVIIGMPGTGKTTTIVALVRILVAC--GMSVLLTSYTH 381 Query: 118 TQLKNTLWAEVSKWLS--MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 + + N L + + L +H + S E S T Sbjct: 382 SAVDNILLKLLKYKIDILRLGAQHNIHPELREFSDSKLMKEASGVSQLAMQMERKKVVAT 441 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 S + H+ DEAS Sbjct: 442 TSLGMKHALLTRHS--FDVCIVDEASQISQ 469 >gi|209527482|ref|ZP_03275986.1| arsenite-activated ATPase ArsA [Arthrospira maxima CS-328] gi|209492090|gb|EDZ92441.1| arsenite-activated ATPase ArsA [Arthrospira maxima CS-328] Length = 637 Score = 39.5 bits (90), Expect = 0.72, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 8/127 (6%) Query: 80 CAISAGRG-IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 A+ +G+G +GKTTL + L S P I+ ++ +L + + PH Sbjct: 10 LALFSGKGGVGKTTLACGLALHWASQFPDDRILLLSTDPAH---SLGDVLQMQVENTPHH 66 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + L A + + Y T + + V++ Sbjct: 67 VAAMADFVPLPNLSIRALDAHILLKDFKERYGDTLQLL----VERGSFVEGEDLTPVWDL 122 Query: 199 EASGTPD 205 E G + Sbjct: 123 EWPGVDE 129 >gi|84386171|ref|ZP_00989200.1| Predicted P-loop ATPase fused to an acetyltransferase [Vibrio splendidus 12B01] gi|84378941|gb|EAP95795.1| Predicted P-loop ATPase fused to an acetyltransferase [Vibrio splendidus 12B01] Length = 699 Score = 39.5 bits (90), Expect = 0.72, Method: Composition-based stats. Identities = 26/217 (11%), Positives = 52/217 (23%), Gaps = 37/217 (17%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 ++A RG GK++ L+ R G+ II A S ++ + + Sbjct: 190 LILTADRGRGKSSTLGIAAAQLLVERHGLDIIVTAPSVKAIEPVFSHAIQRL-------- 241 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + + DE Sbjct: 242 ------------EVIEVVNATHIRHQGGSLRFVAP--------DDLLKSKPDCDLLMVDE 281 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 A+ P + + ++ S T F I E W + Sbjct: 282 AAAIP-------IPMLKSMAGIYHRMVFSTTVHGYEGSGRGFGIKFESWLSVHRPGW--K 332 Query: 260 GIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 G + L++ + +LG + Sbjct: 333 GFKLEQPIRWNNNDPLEAWLFDCFLLGNDASLSDSAI 369 >gi|260654109|ref|ZP_05859599.1| CRISPR-associated helicase Cas3 domain protein [Jonquetella anthropi E3_33 E1] gi|260631094|gb|EEX49288.1| CRISPR-associated helicase Cas3 domain protein [Jonquetella anthropi E3_33 E1] Length = 810 Score = 39.5 bits (90), Expect = 0.72, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 48/224 (21%), Gaps = 12/224 (5%) Query: 68 SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS---ETQLKNTL 124 + P F+ + G GKT + L T II Q + L Sbjct: 304 RQAGHCEPGFFQLTV--PTGGGKTLASLAFALEHCLTNGRRRIIYAIPYVSIIEQTADVL 361 Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184 ++L H + +L + + + +R Sbjct: 362 RGIFGDTGAVLEHHSNILPERETLQNKLAAENWDAPIVVTTN---VQLFESLLSDRRVLC 418 Query: 185 VGPHNTHGMAVFNDEASGTPDIIN----KSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240 HN + DEA P + G + + Sbjct: 419 RKIHNISRSVIILDEAQMLPLQHMRGVLSVLKGLVKHFGVTVLLCTATQPALTRTFSDGQ 478 Query: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 + QI + + Y E+ Sbjct: 479 NVSFPGLPEPRQIVPAGADLYQKLLRAEWVRDYNPTQPRTWDEL 522 >gi|255010503|ref|ZP_05282629.1| hypothetical protein Bfra3_15299 [Bacteroides fragilis 3_1_12] gi|313148310|ref|ZP_07810503.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313137077|gb|EFR54437.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 376 Score = 39.5 bits (90), Expect = 0.72, Method: Composition-based stats. Identities = 22/145 (15%), Positives = 38/145 (26%), Gaps = 8/145 (5%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 A+ + R +GKT L + + + L++ ++A + L L Sbjct: 38 NLALISTRRMGKTGLIQHCFRERKIRKDYYTFFIDIYATKSLRDLVFALSKEILEELKPS 97 Query: 139 -----HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 F SLH S + S+ + T E H Sbjct: 98 GKKALQLFWKSVKSLHTSVSFDINGTPSLSLGLGDIQAPATTLDEIFHY---LNHADKPC 154 Query: 194 AVFNDEASGTPDIINKSILGFFTEL 218 V DE ++ Sbjct: 155 LVAIDEFQQIAGYAEDNVEATLRTY 179 >gi|167767000|ref|ZP_02439053.1| hypothetical protein CLOSS21_01517 [Clostridium sp. SS2/1] gi|167710975|gb|EDS21554.1| hypothetical protein CLOSS21_01517 [Clostridium sp. SS2/1] gi|291559659|emb|CBL38459.1| Phage terminase-like protein, large subunit [butyrate-producing bacterium SSC/2] Length = 582 Score = 39.5 bits (90), Expect = 0.72, Method: Composition-based stats. Identities = 38/282 (13%), Positives = 77/282 (27%), Gaps = 35/282 (12%) Query: 86 RGIGKTTLNAWMMLWLISTRPGMSI-ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 RG K+ + + + ++ + I A + Q + + F + Sbjct: 127 RGAAKSMYESCIQNFFLNVDTSTTYQITTAPTMKQADEVMSPIRTSITRARGPLFKFLTE 186 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE--ASG 202 + +G A ++ + +T E RP + DE + Sbjct: 187 GSLQNTTGSKANRVKLTSTKKGIENFLTGSLL-EVRPMSIDKLQGMRCKIATVDEWLSGD 245 Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY------------DIFNIPLEDWKR 250 + +I ++ + +S NG + FN + W Sbjct: 246 VREDPIGAIEQGASKNDDYLIIATSSEGTVRNGVGDTIKMELMNILKGEYFNPHVSIWYY 305 Query: 251 YQIDTRTVEGIDS-------------GFHEGIISRYGLDSDVARIEILGQF---PQQEVN 294 V D + ++ +R +IL + P + Sbjct: 306 KLDSIEEVNDPDMWLKANPNLGKTVTYETYQLDVDKAENNPASRNDILAKRFGIPMEGYT 365 Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 F + E R D P +G D++ +G D F Sbjct: 366 YFFTYE--ETLTHRRKRDYWQMPCALGADLS-QGDDFCAFTF 404 >gi|154321994|ref|XP_001560312.1| hypothetical protein BC1G_01144 [Botryotinia fuckeliana B05.10] gi|150850391|gb|EDN25584.1| hypothetical protein BC1G_01144 [Botryotinia fuckeliana B05.10] Length = 730 Score = 39.5 bits (90), Expect = 0.72, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 51/185 (27%), Gaps = 20/185 (10%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICI----ANSETQLKNTLWAE------VSKWLSMLP 136 G+GKT + A + ++ + PGMS + + N+ W E S L Sbjct: 201 GLGKT-IEAIVTMYHMKDEPGMSYVVCPAALCPQWVKAINSSWKEGHGLTAFHLHDSSLT 259 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH---YTITCRTYSEERPDTFVGPHNTH-- 191 M L S + E ++ + Y + +RP T + H Sbjct: 260 AHDVQGMGCHVLVMSYNFVETNKRKPKNFAGDIALYANDGKATRPKRPTTSIQSDMWHEI 319 Query: 192 ---GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT-RRLNGWFYDIFNIPLED 247 + DEA + + R F + + Sbjct: 320 NLQPKLLVLDEAQMVNKPALAWARALMALKAKRVLVMSGTLPHNRWTDIFGYLNFLKGHP 379 Query: 248 WKRYQ 252 + + Sbjct: 380 FNTQR 384 >gi|298529811|ref|ZP_07017214.1| CRISPR-associated helicase Cas3 [Desulfonatronospira thiodismutans ASO3-1] gi|298511247|gb|EFI35150.1| CRISPR-associated helicase Cas3 [Desulfonatronospira thiodismutans ASO3-1] Length = 721 Score = 39.5 bits (90), Expect = 0.73, Method: Composition-based stats. Identities = 23/228 (10%), Positives = 53/228 (23%), Gaps = 21/228 (9%) Query: 60 EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119 + C N + P +F + G GKT + L II + + Sbjct: 215 REILERCRENASL-EPGLFTLTV--PTGGGKTLASMAFALEHSQKYGHRRIIYVIPYTSI 271 Query: 120 LKN--TLWAEV---SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS---KHYTI 171 ++ ++ E+ + + + + L Sbjct: 272 IEQNAQVFREIFPPDSIIEHHSNFDERSLPEEADQFGPGLRHRLACENWGAPVVVTTNVQ 331 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMT 227 + +P HN G + DEA P + +++ + Sbjct: 332 FFESLYASKPSRCRKLHNLAGSVIILDEAQMLPVKYLNPCLRALEELAENYQASIVLCTA 391 Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275 + + + + + F + G Sbjct: 392 TQP------ALRKRDDFKHGLDGVREIAPEPKRMHREFLRTRLKDAGR 433 >gi|329943344|ref|ZP_08292118.1| exodeoxyribonuclease V, alpha subunit [Chlamydophila psittaci Cal10] gi|332287920|ref|YP_004422821.1| exodeoxyribonuclease V subunit alpha [Chlamydophila psittaci 6BC] gi|313848493|emb|CBY17497.1| exodeoxyribonuclease V alpha chain [Chlamydophila psittaci RD1] gi|325506621|gb|ADZ18259.1| exodeoxyribonuclease V subunit alpha [Chlamydophila psittaci 6BC] gi|328814891|gb|EGF84881.1| exodeoxyribonuclease V, alpha subunit [Chlamydophila psittaci Cal10] gi|328915185|gb|AEB56018.1| exodeoxyribonuclease V, alpha subunit [Chlamydophila psittaci 6BC] Length = 504 Score = 39.5 bits (90), Expect = 0.73, Method: Composition-based stats. Identities = 18/138 (13%), Positives = 39/138 (28%), Gaps = 5/138 (3%) Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124 + V + I G G GKT L +++ LI P + I ++ + + Sbjct: 138 QEQNEVFHKAVNSCFSLICGGPGTGKTFLAVQIIIALIKQYPKIRIAIVSPTGK--ATSH 195 Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184 + + + L ++ + +D +S + Sbjct: 196 IRHILSKHHISESSVTIQTIHRFLQEHAYHQCASFDLLLVDEGSMVTFSLLHSLVNTLSG 255 Query: 185 VGPHNT---HGMAVFNDE 199 H + + DE Sbjct: 256 ENKHGKIIADNLIILGDE 273 >gi|312383231|gb|EFR28397.1| hypothetical protein AND_03789 [Anopheles darlingi] Length = 2300 Score = 39.5 bits (90), Expect = 0.73, Method: Composition-based stats. Identities = 14/125 (11%), Positives = 31/125 (24%), Gaps = 9/125 (7%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + A G GKTT+ + +L L+S P ++ + + + +W Sbjct: 1378 NVFVGAPTGSGKTTIAEFAVLRLLSQNPAGRVVYLVAKDALAEII----FHEWHQRFGQS 1433 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + + + T + + + D Sbjct: 1434 AL-----GCKVVKLTGETGTDLKLIAKGQIIVTTADKWDVLSRRWKQRKNVQNVQLFIVD 1488 Query: 199 EASGT 203 E Sbjct: 1489 ELQLI 1493 >gi|303318869|ref|XP_003069434.1| SNF2 family N-terminal domain containing protein [Coccidioides posadasii C735 delta SOWgp] gi|240109120|gb|EER27289.1| SNF2 family N-terminal domain containing protein [Coccidioides posadasii C735 delta SOWgp] Length = 1688 Score = 39.5 bits (90), Expect = 0.73, Method: Composition-based stats. Identities = 23/188 (12%), Positives = 46/188 (24%), Gaps = 17/188 (9%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G+GKT + +M +L + + L N E+ K++ L ++ Sbjct: 824 GLGKTVQSISVMAYLAEVHDIWGPFLVVAPSSTLHN-WQQEIVKFVPDLKVLPYWGSAKD 882 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + +++ + T + + DEA Sbjct: 883 RKVLRKF---WDRRNITYRKQSEFHVLVTSYQLVVGDAQYFQKIKWQYMILDEAQAIKSS 939 Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW---KRYQIDTRTVEGIDS 263 S ++ ++T I N E W S Sbjct: 940 Q-SSRWKSLLGMHCRNRLLLTGTP---------IQNNMQELWALLHFIMPTLFDSHDEFS 989 Query: 264 GFHEGIIS 271 + I Sbjct: 990 EWFSKDIE 997 >gi|258572046|ref|XP_002544805.1| potential DNA-dependent ATPase Ino80p [Uncinocarpus reesii 1704] gi|237905075|gb|EEP79476.1| potential DNA-dependent ATPase Ino80p [Uncinocarpus reesii 1704] Length = 1668 Score = 39.5 bits (90), Expect = 0.73, Method: Composition-based stats. Identities = 23/188 (12%), Positives = 46/188 (24%), Gaps = 17/188 (9%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G+GKT + +M +L + + L N E+ K++ L ++ Sbjct: 832 GLGKTVQSISVMAYLAEVHDIWGPFLVVAPSSTLHN-WQQEIVKFVPDLKVLPYWGSAKD 890 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + +++ + T + + DEA Sbjct: 891 RKVLRKF---WDRRNITYRKQSEFHVLVTSYQLVVGDAQYFQKIKWQYMILDEAQAIKSS 947 Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW---KRYQIDTRTVEGIDS 263 S ++ ++T I N E W S Sbjct: 948 Q-SSRWKSLLGMHCRNRLLLTGTP---------IQNNMQELWALLHFIMPTLFDSHDEFS 997 Query: 264 GFHEGIIS 271 + I Sbjct: 998 EWFSKDIE 1005 >gi|282599774|ref|ZP_05971828.2| terminase, ATPase subunit [Providencia rustigianii DSM 4541] gi|282567779|gb|EFB73314.1| terminase, ATPase subunit [Providencia rustigianii DSM 4541] Length = 594 Score = 39.5 bits (90), Expect = 0.73, Method: Composition-based stats. Identities = 38/340 (11%), Positives = 79/340 (23%), Gaps = 52/340 (15%) Query: 42 GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101 ++ E + H +N+ S I R IG T A+ Sbjct: 137 DISNLTADDFQKFADEMLFGYQKHLRANITKSVRN-----ILKSRQIGATWYFAFEAFED 191 Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161 G + ++ S+ Q EV + + +F + L Sbjct: 192 ACLT-GKPQLFLSASKPQA------EVFRSYIVNIAEKFFGVTLTGNPIRLSNGAELRFL 244 Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221 + + + Y +E A T D + + Sbjct: 245 STNKNTAQSYSGHLYCDEYFWVPDFKRFNE-----VSSAMATHDHWRTTYFSTPSAKTHP 299 Query: 222 RFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL------ 275 + T + R + P + + R + + Sbjct: 300 AYPFWTGDEWRGSDPARKKVKFPQ--FDELRDGGRDCPDGQWRYVITLEDAIKGGFNLAS 357 Query: 276 --------DSDVARIEILGQFPQQEVNNFIPHNYIEEA-----MSREAIDDLYAPL---- 318 + D + + F + ++ +++ + + D P Sbjct: 358 IERLRNKYNPDSFNMLFMCVFVDSGA-SVFKYHQLDKCGVDVHLWEDHNPDAPRPFGDRE 416 Query: 319 IMG-CDIAGEGGDKTVVVFR-------RGNIIEHIFDWSA 350 + G D A G D + + IF W Sbjct: 417 VWGGFDPARSG-DTSTFAIVAPPMMAPEVFRVLAIFYWQG 455 >gi|221070358|gb|ACL99059.1| polyprotein [Dengue virus 3] Length = 3390 Score = 39.5 bits (90), Expect = 0.73, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTSATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|221070331|gb|ACL99046.1| polyprotein [Dengue virus 3] Length = 3390 Score = 39.5 bits (90), Expect = 0.73, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTSATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|88860256|ref|ZP_01134894.1| ATP-dependent RNA helicase [Pseudoalteromonas tunicata D2] gi|88817454|gb|EAR27271.1| ATP-dependent RNA helicase [Pseudoalteromonas tunicata D2] Length = 408 Score = 39.5 bits (90), Expect = 0.73, Method: Composition-based stats. Identities = 31/308 (10%), Positives = 69/308 (22%), Gaps = 41/308 (13%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-----SII 111 + SA G GKT + + P ++ Sbjct: 18 KAGYKTPTSIQQLAIPEAMAGRDILASAPTGTGKTAAFLLPSIQYLLDFPRRDPGFARVL 77 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + + + L + + + + Sbjct: 78 IMTPTRELAYQI--------HEQCVL--FAANTHLKIGVVTGGINYGSHKDIFEKNNDIL 127 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS-ILGFFTELNPNRFWIMTSNT 230 H + + DEA D+ +S ++ E R + S T Sbjct: 128 IATPGRLMDYMKTEEFHAENVEILILDEADRMLDMGFRSEMMKICDEATNRRQCFLFSAT 187 Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTR-------------TVEGIDSGFHEGIISRYGLDS 277 + I + +R E I+ + Sbjct: 188 LEGDSVERFADTILNDPALLEAESSRKEQGKILQWVHLADSRNHKLDLLEAILKAEDMSK 247 Query: 278 DVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDL-----------YAPLIMGCDIAG 326 + ++ + ++ V + + + E D A +++ D+A Sbjct: 248 AIVFVKTR-EKLEELVGLLVARDIKTAWLRGEMPQDKRMAAMANFQSGRANILVATDVAA 306 Query: 327 EGGDKTVV 334 G D T + Sbjct: 307 RGIDVTDI 314 >gi|238879929|gb|EEQ43567.1| hypothetical protein CAWG_01805 [Candida albicans WO-1] Length = 1388 Score = 39.5 bits (90), Expect = 0.74, Method: Composition-based stats. Identities = 26/222 (11%), Positives = 54/222 (24%), Gaps = 25/222 (11%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 +QL+ + + +N G+GKT + + +L ++ M Sbjct: 675 EYQLKGLNWLANLYEQGINGILADEM--------GLGKT-VQSISVLAYLAETYNMWGPF 725 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 + + + E++K++ ++ + +S+ D Sbjct: 726 LVVTPASTLHNWQQEITKFVPEFKVLPYWGNAKDRKILRKF---WDRKSLRYDKDSPFHV 782 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232 T + + DEA S L ++T Sbjct: 783 LVTSYQLIVADIAYFQKMKWQYMILDEAQAIKSSS-SSRWKSLLNLTCRNRLLLTGTP-- 839 Query: 233 LNGWFYDIFNIPLEDW---KRYQIDTRTVEGIDSGFHEGIIS 271 I N E W S + I Sbjct: 840 -------IQNSMQELWALLHFIMPSIFDSHDEFSDWFAKDIE 874 >gi|242215360|ref|XP_002473496.1| predicted protein [Postia placenta Mad-698-R] gi|220727397|gb|EED81317.1| predicted protein [Postia placenta Mad-698-R] Length = 811 Score = 39.5 bits (90), Expect = 0.74, Method: Composition-based stats. Identities = 26/241 (10%), Positives = 58/241 (24%), Gaps = 19/241 (7%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG--- 107 P + + N F +A G GKT L ++ ++ G Sbjct: 1 PIPVSADVYRGMFKF--GVFNAVQSQCFDIVCAAPTGSGKTVLFELAIIRMLMQSGGNSN 58 Query: 108 -MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 I IA ++ +K+ ++ + ++ L + W M + Sbjct: 59 TSKCIYIAPTKALCSEKCREWTTKFQALGVNCCELTGDTVQLGKNAWGNARDASIMYGEK 118 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT-----ELNPN 221 R++ DE + ++ + + Sbjct: 119 WDSL--TRSWRRHGQILSQ------IQLFLIDEVHILNESRGSTLEVVLSRMKARGSSVR 170 Query: 222 RFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR 281 + + + + P Q S F G + + V + Sbjct: 171 FVVVSATVPNIKDVASWIGDGTPDGSATVMQFGEEFRPCRLSKFVYGFFRKREQNDFVFQ 230 Query: 282 I 282 Sbjct: 231 T 231 >gi|165975771|ref|YP_001651364.1| ATP-dependent helicase HepA [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|254789671|sp|B0BT63|RAPA_ACTPJ RecName: Full=RNA polymerase-associated protein rapA; AltName: Full=ATP-dependent helicase hepA gi|165875872|gb|ABY68920.1| RNA polymerase associated protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 969 Score = 39.5 bits (90), Expect = 0.74, Method: Composition-based stats. Identities = 20/172 (11%), Positives = 45/172 (26%), Gaps = 5/172 (2%) Query: 33 MRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTI-FKCAISAGRGIGKT 91 + F P R ++ H + + ++ G+GKT Sbjct: 123 RFALRYRALQHQQAQFQSPLRGMRGIRASLIPHQLHIAKEVGQRVAPRVLLADEVGLGKT 182 Query: 92 TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151 ++ + + ++ + Q + W V F+ + + Sbjct: 183 IEAGMILQQQLFSGRVERVLVLVPESLQHQ---W-LVEMLRRFNLKFSLFDEERCADFDK 238 Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 DS+ I + E P+ ++ + DEA Sbjct: 239 ADEDGNDVSENPFDSEALVIASIDWLESSPNRAKQVLASNWDMLIVDEAHHL 290 >gi|68491912|ref|XP_710254.1| potential DNA-dependent ATPase Ino80p [Candida albicans SC5314] gi|68491929|ref|XP_710247.1| potential DNA-dependent ATPase Ino80p [Candida albicans SC5314] gi|74679547|sp|Q59KI4|INO80_CANAL RecName: Full=Putative DNA helicase INO80 gi|46431413|gb|EAK90982.1| potential DNA-dependent ATPase Ino80p [Candida albicans SC5314] gi|46431421|gb|EAK90989.1| potential DNA-dependent ATPase Ino80p [Candida albicans SC5314] Length = 1387 Score = 39.5 bits (90), Expect = 0.74, Method: Composition-based stats. Identities = 26/222 (11%), Positives = 54/222 (24%), Gaps = 25/222 (11%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 +QL+ + + +N G+GKT + + +L ++ M Sbjct: 674 EYQLKGLNWLANLYEQGINGILADEM--------GLGKT-VQSISVLAYLAETYNMWGPF 724 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 + + + E++K++ ++ + +S+ D Sbjct: 725 LVVTPASTLHNWQQEITKFVPEFKVLPYWGNAKDRKILRKF---WDRKSLRYDKDSPFHV 781 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232 T + + DEA S L ++T Sbjct: 782 LVTSYQLIVADIAYFQKMKWQYMILDEAQAIKSSS-SSRWKSLLNLTCRNRLLLTGTP-- 838 Query: 233 LNGWFYDIFNIPLEDW---KRYQIDTRTVEGIDSGFHEGIIS 271 I N E W S + I Sbjct: 839 -------IQNSMQELWALLHFIMPSIFDSHDEFSDWFAKDIE 873 >gi|327295602|ref|XP_003232496.1| DNA replication helicase Dna2 [Trichophyton rubrum CBS 118892] gi|326465668|gb|EGD91121.1| DNA replication helicase Dna2 [Trichophyton rubrum CBS 118892] Length = 1591 Score = 39.5 bits (90), Expect = 0.75, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 32/120 (26%), Gaps = 7/120 (5%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS--MLPHRHWFEMQ 144 G GKTT A ++ G S++ + + T + N L L + Sbjct: 1089 GTGKTTTIAQII--RALVSQGKSVLLTSYTHTAVDNILLKIRDDKYRILRLGTPSKVHPE 1146 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + + ++ + T + DEAS Sbjct: 1147 VQQFAEMAATPKNTIEELEDSYENSKVVATTCLGVNH---RIFNTRTFDYCIVDEASQIT 1203 >gi|255523170|ref|ZP_05390141.1| type III restriction protein res subunit [Clostridium carboxidivorans P7] gi|296186136|ref|ZP_06854541.1| type III restriction enzyme, res subunit [Clostridium carboxidivorans P7] gi|255513038|gb|EET89307.1| type III restriction protein res subunit [Clostridium carboxidivorans P7] gi|296049404|gb|EFG88833.1| type III restriction enzyme, res subunit [Clostridium carboxidivorans P7] Length = 752 Score = 39.5 bits (90), Expect = 0.75, Method: Composition-based stats. Identities = 24/183 (13%), Positives = 53/183 (28%), Gaps = 8/183 (4%) Query: 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM-LWLISTRPGMSIIC 112 +Q + + + + + N+ + A G GKT + + + + I Sbjct: 7 YQKKAVRELVDKTNRLLKNNEKKKV-LVLKAPTGSGKTVIASKYIEMVSKLQDKDFCFIW 65 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 I+ + L ++S L P E ++ K+ Sbjct: 66 ISIGKGHLHEQSKNKISSILEGSPPCKLLEDVIRYGIIKRNAIVVVNWEKLNTKKNGAWD 125 Query: 173 CRTYSEERPDTF----VGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 E F + + + DE+ T D ++ +NP M++ Sbjct: 126 NVLMREGDGINFLKLLENTSSARKIILIVDESHNTTDT--RTSRELMNIINPEILLEMSA 183 Query: 229 NTR 231 + Sbjct: 184 TPK 186 >gi|253583367|ref|ZP_04860565.1| helicase [Fusobacterium varium ATCC 27725] gi|251833939|gb|EES62502.1| helicase [Fusobacterium varium ATCC 27725] Length = 1624 Score = 39.5 bits (90), Expect = 0.75, Method: Composition-based stats. Identities = 17/152 (11%), Positives = 46/152 (30%), Gaps = 17/152 (11%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + N + G GKT A ++ ++ G +++ ++++ L Sbjct: 365 EIAEKIERNNA--------VVVQGPPGTGKTHTIANLLGHFLAQ--GKNVLVTSHTKKAL 414 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSL-------HPSGWYAELLEQSMGIDSKHYTITC 173 K + + + S + +E L++ + I K + Sbjct: 415 KVLKEKIPKNIQGLCISILDDDNSDMKRSIESISEKMSSFNSEDLKKDIEILKKDRVMIY 474 Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 + + + + + ++N E D Sbjct: 475 EEFKKIKEEMLSIKYKESQSIIYNGEGISVKD 506 >gi|227540804|ref|ZP_03970853.1| type I restriction-modification system restriction subunit [Corynebacterium glucuronolyticum ATCC 51866] gi|227183433|gb|EEI64405.1| type I restriction-modification system restriction subunit [Corynebacterium glucuronolyticum ATCC 51866] Length = 1004 Score = 39.5 bits (90), Expect = 0.75, Method: Composition-based stats. Identities = 30/200 (15%), Positives = 57/200 (28%), Gaps = 16/200 (8%) Query: 3 RLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAV 62 + ++ + + L+ + + F FV P G K + P QL+ + A+ Sbjct: 232 KYKTSYLWEQVLAKDSLL--DILHRFVQFVPGKTPEGRPAKSKDKVIFPRFHQLDAVRAL 289 Query: 63 DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG-MSIICIANSETQLK 121 N N + A G GK+ AW+ L + ++ + + Sbjct: 290 VADAKDNGAGKNYLVQHSA-----GSGKSNTIAWLAHHLSNLHDDEQRVVFDSIIVITDR 344 Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 L ++ + F M + + + + I Sbjct: 345 RVLDKQLQDTV--------FSMDHTAGVVVKVDKNARQLTEALGRGARIIISTLQKFPFV 396 Query: 182 DTFVGPHNTHGMAVFNDEAS 201 D AV DEA Sbjct: 397 DVSNIATAGKHFAVIVDEAH 416 >gi|169635115|gb|ACA58333.1| polyprotein [Dengue virus 3] Length = 3390 Score = 39.5 bits (90), Expect = 0.75, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAVVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|169635107|gb|ACA58329.1| polyprotein [Dengue virus 3] Length = 3390 Score = 39.5 bits (90), Expect = 0.75, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAVVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|169143914|gb|ACA48831.1| polyprotein [Dengue virus 3] Length = 3390 Score = 39.5 bits (90), Expect = 0.75, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAVVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|108760236|ref|YP_635133.1| CRISPR-associated helicase Cas3 [Myxococcus xanthus DK 1622] gi|108464116|gb|ABF89301.1| CRISPR-associated helicase Cas3 [Myxococcus xanthus DK 1622] Length = 767 Score = 39.5 bits (90), Expect = 0.75, Method: Composition-based stats. Identities = 22/162 (13%), Positives = 45/162 (27%), Gaps = 9/162 (5%) Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL--WAEVSKWL 132 P +F + G GKT + L T+ +I + ++ + + + + L Sbjct: 276 PGVFSLTV--PTGGGKTLTSMAFALEHARTQGLQRVIVAIPYTSIIEQSAEAYRQAFQGL 333 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 H + P A + I + + + RP H Sbjct: 334 EHAVIEHHSAVDPDRETPLNRVASENWDAPIIVTTTVQLLESLF-ARRPSACRKLHRVAR 392 Query: 193 MAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNT 230 + DEA P + I + + + + Sbjct: 393 SVIVLDEAQTLPASLLEPILDGLGALVRDYGCSVVICTATQP 434 >gi|118580907|ref|YP_902157.1| PhoH family protein [Pelobacter propionicus DSM 2379] gi|118503617|gb|ABL00100.1| PhoH family protein [Pelobacter propionicus DSM 2379] Length = 438 Score = 39.5 bits (90), Expect = 0.75, Method: Composition-based stats. Identities = 22/154 (14%), Positives = 46/154 (29%), Gaps = 10/154 (6%) Query: 87 GIGKTTLN-AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 G GKT L A + + ++ K+ L L W + Sbjct: 254 GTGKTLLAIAAGLHKVAEDNVYNRLLVSRPVFPMGKD-LGFLPGDIEEKL--TPWMQPIF 310 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 ++ E + + + + P T++ + + DEA Sbjct: 311 DNVELLISGHEAEK---RHSKGYKELMAMGLLDIEPLTYIRGRSIPNQYLIVDEAQNLTP 367 Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239 K+I T + I+T + +++ + D Sbjct: 368 HEIKTI---VTRVGEGTKIILTGDPYQIDNPYVD 398 >gi|322392316|ref|ZP_08065777.1| hypothetical protein HMPREF9180_1167 [Streptococcus peroris ATCC 700780] gi|321144851|gb|EFX40251.1| hypothetical protein HMPREF9180_1167 [Streptococcus peroris ATCC 700780] Length = 885 Score = 39.5 bits (90), Expect = 0.75, Method: Composition-based stats. Identities = 21/245 (8%), Positives = 54/245 (22%), Gaps = 30/245 (12%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q + ++ + + ++A G GKTT+ + R + Sbjct: 15 RNYQKQVLDNFQEYQADGHVH--------LVAAP-GSGKTTIG-----IELIARFDKPAL 60 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI--DSKHY 169 + + ++ + + ++ + + + Sbjct: 61 VLVPT-VTIREQWVDRIRQAFLEDENQITSLVSQNLKDMKQITIATYQAFHSAMQQVQSQ 119 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 D + DE + KS+ F + +T+ Sbjct: 120 EDNGEVEDFVGFDLLARLKERGVETLCLDECHHLRNEWWKSLEDFRKNYQQLQVISLTAT 179 Query: 230 TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFP 289 + D E + D + FP Sbjct: 180 PPYDSEPELW-------DRYLQMCGEIDQEITVPELVKEDTLCPHQD------FVYICFP 226 Query: 290 QQEVN 294 +E + Sbjct: 227 TKEED 231 >gi|307184505|gb|EFN70894.1| Putative U5 small nuclear ribonucleoprotein 200 kDa helicase [Camponotus floridanus] Length = 2140 Score = 39.5 bits (90), Expect = 0.75, Method: Composition-based stats. Identities = 25/220 (11%), Positives = 48/220 (21%), Gaps = 28/220 (12%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 F Q + Q + AV + A G GKTT+ + +L L++ Sbjct: 1317 EFPQFNPIQTQVFNAVYNSDD-----------NVFVGAPTGSGKTTIAEFAVLRLLTQNS 1365 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 + + + E + W F Q + + Sbjct: 1366 EGRCVYMVSKEALAELVY----DDWAKK------FGQQLGRKVVLLTGETGTDLKLLAKG 1415 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL-------N 219 + T + + + DE + + + Sbjct: 1416 QIIITTADKWDVLSRRWKQRKNVQNIQLFIVDELQLIGGEEGPVLEVACSRARYISSQLD 1475 Query: 220 PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 I S + P + R V Sbjct: 1476 KPTRIIALSASLGDAKDAAQWLGAPAAATFNFHPSVRPVP 1515 >gi|241958618|ref|XP_002422028.1| DNA helicase, putative [Candida dubliniensis CD36] gi|223645373|emb|CAX40029.1| DNA helicase, putative [Candida dubliniensis CD36] Length = 1366 Score = 39.5 bits (90), Expect = 0.75, Method: Composition-based stats. Identities = 26/222 (11%), Positives = 54/222 (24%), Gaps = 25/222 (11%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 +QL+ + + +N G+GKT + + +L ++ M Sbjct: 656 EYQLKGLNWLANLYEQGINGILADEM--------GLGKT-VQSISVLAYLAETYNMWGPF 706 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 + + + E++K++ ++ + +S+ D Sbjct: 707 LVVTPASTLHNWQQEITKFVPEFKVLPYWGNAKDRKILRKF---WDRKSLRYDKDSPFHV 763 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232 T + + DEA S L ++T Sbjct: 764 LVTSYQLIVADIAYFQKMKWQYMILDEAQAIKSSS-SSRWKSLLNLTCRNRLLLTGTP-- 820 Query: 233 LNGWFYDIFNIPLEDW---KRYQIDTRTVEGIDSGFHEGIIS 271 I N E W S + I Sbjct: 821 -------IQNSMQELWALLHFIMPSIFDSHDEFSDWFAKDIE 855 >gi|160903308|ref|YP_001568889.1| CRISPR-associated helicase Cas3 [Petrotoga mobilis SJ95] gi|160360952|gb|ABX32566.1| CRISPR-associated helicase Cas3 [Petrotoga mobilis SJ95] Length = 730 Score = 39.5 bits (90), Expect = 0.75, Method: Composition-based stats. Identities = 32/261 (12%), Positives = 64/261 (24%), Gaps = 15/261 (5%) Query: 27 SFKNFVMRFFPWGIKGKPLEHF--SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISA 84 NF + K LE + W+ + E+ + S P I+ + Sbjct: 187 DRINFDKISYQQDRFDKFLESLPKNHLSDWKNKIRES---TLSNVDTISEPGIYTITL-- 241 Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 G GKT + L + +II + + + +EV+K + + Sbjct: 242 PTGAGKTLTGLQASMKLANKLSLKTIIYVLPFISIVDQN--SEVAKKIYDKVQEDHHLVS 299 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRT-----YSEERPDTFVGPHNTHGMAVFNDE 199 + E S + +T + + H V DE Sbjct: 300 ASKEKEDLDNLERFILSFRYFKEPLIVTTLAKFWEVLYSPNANDSMSFHRLKDAVVILDE 359 Query: 200 ASGTPDIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 P + + + + + K Sbjct: 360 PQSIPPEYWQGFGETMSFLSKKMGTYFILMTATQPKIAEGKELAPKSSFPKNRHCYNIVN 419 Query: 259 EGIDSGFHEGIISRYGLDSDV 279 E I + + +S + Sbjct: 420 EKIKLSDIKQFTADRTDNSSL 440 >gi|325968164|ref|YP_004244356.1| reverse gyrase [Vulcanisaeta moutnovskia 768-28] gi|323707367|gb|ADY00854.1| reverse gyrase [Vulcanisaeta moutnovskia 768-28] Length = 1263 Score = 39.5 bits (90), Expect = 0.76, Method: Composition-based stats. Identities = 18/132 (13%), Positives = 32/132 (24%), Gaps = 7/132 (5%) Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 AI A G GKTT L++ R ++ + + T + Sbjct: 90 QRLWTRRLIKGKSFAIVAPTGSGKTTFGMMASLYIAL-RKRSKVLIVVPTSTLAYDV-HR 147 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 +S++ + M S L+ + G Sbjct: 148 RLSEYSGKMNSNIRIIMASSILYKQELIDAMNAIENGDFDILIITNAFLPRH-----MDL 202 Query: 187 PHNTHGMAVFND 198 +F D Sbjct: 203 LRKYRFSLIFVD 214 >gi|298674426|ref|YP_003726176.1| hypothetical protein Metev_0465 [Methanohalobium evestigatum Z-7303] gi|298287414|gb|ADI73380.1| protein of unknown function DUF450 [Methanohalobium evestigatum Z-7303] Length = 988 Score = 39.5 bits (90), Expect = 0.76, Method: Composition-based stats. Identities = 23/228 (10%), Positives = 57/228 (25%), Gaps = 28/228 (12%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---- 106 P QL+ + ++ + N + + G GK+ AW+ L Sbjct: 266 PRYHQLKAVNSMIENARLNGPGH-----RYLVQHSTGSGKSFTIAWLCNKLSGLHDENNN 320 Query: 107 ---GMSIICI--ANSETQLKNTLW-----AEVSKWLSMLPHRHWFEM---QSLSLHPSGW 153 I+ + QL +T++ +W+ + + + Sbjct: 321 RIFDSIIVITDRRVLDQQLSSTMFEFEQVRGTVEWIDSNKKSEQLKQALESNKEIIVVTL 380 Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV------FNDEASGTPDII 207 + + + V + DE + + Sbjct: 381 QTFPFLVDEANQLSDRNFAIVVDEAHSSQSGETARGSRKVLVSADDVQYEDEMEKDVEDV 440 Query: 208 NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDT 255 S + N + + T + +P ++ Y + + Sbjct: 441 INSEIEKTVGPAKNISYFAFTATPKQKTLELFGTKMPDGSYEPYHLYS 488 >gi|256374708|ref|YP_003098368.1| hypothetical protein Amir_0555 [Actinosynnema mirum DSM 43827] gi|255919011|gb|ACU34522.1| hypothetical protein Amir_0555 [Actinosynnema mirum DSM 43827] Length = 478 Score = 39.5 bits (90), Expect = 0.76, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 18/45 (40%) Query: 68 SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 + A++ G G GK+TL + ++ ++ P + Sbjct: 45 RGHRARFAEPVRVAVAGGHGTGKSTLVSALVGEELTAPPTATAWY 89 >gi|222615621|gb|EEE51753.1| hypothetical protein OsJ_33185 [Oryza sativa Japonica Group] Length = 726 Score = 39.5 bits (90), Expect = 0.76, Method: Composition-based stats. Identities = 22/209 (10%), Positives = 51/209 (24%), Gaps = 25/209 (11%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q +F+E ++ G+GKT + A +M P I+ Sbjct: 249 REYQKKFVEK-------------ALFTNTLVALPTGLGKTFIAAVVMYNYFRWFPEGKIV 295 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A + V++ + + + + G + + + + Sbjct: 296 FTAPTR--------PLVTQQIEACHNTVGIPQEWT-IDLKGNLSPSKRSCFWKSKRVFFV 346 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK-SILGFFTELNPNRFWIMTSNT 230 T + + + + DEA ++ + + T Sbjct: 347 TPQVLQNDIQSGICMV--NQLVCLVIDEAHRASRNYAYCVVVRELEAARVPLRILALTAT 404 Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 L + D E Sbjct: 405 PGSKQPAIQNVINNLRISELVHCDESDPE 433 >gi|218185362|gb|EEC67789.1| hypothetical protein OsI_35346 [Oryza sativa Indica Group] Length = 648 Score = 39.5 bits (90), Expect = 0.76, Method: Composition-based stats. Identities = 22/209 (10%), Positives = 51/209 (24%), Gaps = 25/209 (11%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q +F+E ++ G+GKT + A +M P I+ Sbjct: 171 REYQKKFVEK-------------ALFTNTLVALPTGLGKTFIAAVVMYNYFRWFPEGKIV 217 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A + V++ + + + + G + + + + Sbjct: 218 FTAPTR--------PLVTQQIEACHNTVGIPQEWT-IDLKGNLSPSKRSCFWKSKRVFFV 268 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK-SILGFFTELNPNRFWIMTSNT 230 T + + + + DEA ++ + + T Sbjct: 269 TPQVLQNDIQSGICMV--NQLVCLVIDEAHRASRNYAYCVVVRELEAARVPLRILALTAT 326 Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 L + D E Sbjct: 327 PGSKQPAIQNVINNLRISELVHCDESDPE 355 >gi|217977592|ref|YP_002361739.1| double-strand break repair helicase AddA [Methylocella silvestris BL2] gi|217502968|gb|ACK50377.1| double-strand break repair helicase AddA [Methylocella silvestris BL2] Length = 1151 Score = 39.5 bits (90), Expect = 0.76, Method: Composition-based stats. Identities = 18/132 (13%), Positives = 36/132 (27%), Gaps = 7/132 (5%) Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA-WMMLWLISTRPGMSIICIANSE 117 + A+ ++ +SA G GKT + A ++ L+ P I+C+ ++ Sbjct: 3 LAAISPQTLQKQREASDPAASVWVSANAGSGKTHVLAQRVVRLLLQGTPPSKILCLTFTK 62 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177 N + W + L + + + RT Sbjct: 63 AAAANMSMRVFNTLAR------WTALDDAELRRAIVATGAPSPDWREMREARKLFARTVE 116 Query: 178 EERPDTFVGPHN 189 H Sbjct: 117 TPGGLKIQTIHA 128 >gi|124022672|ref|YP_001016979.1| exodeoxyribonuclease V 67 kD polypeptide [Prochlorococcus marinus str. MIT 9303] gi|123962958|gb|ABM77714.1| possible exodeoxyribonuclease V 67 kD polypeptide [Prochlorococcus marinus str. MIT 9303] Length = 576 Score = 39.5 bits (90), Expect = 0.76, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 45/138 (32%), Gaps = 25/138 (18%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 +S G G GKT+ M+ ++ RPG+ I A + + L V K L +P Sbjct: 155 VLLSGGPGTGKTSTIVQMLARAVTLRPGLRIGLAAPTGKAAR-RLEEAVRKGLEAIPPTQ 213 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF--VGPHNTHGMAVFN 197 + SL T + + RP F H + Sbjct: 214 RQALTSLP----------------------CSTLHRWLQARPGGFGRHQQHPLMLDLLVI 251 Query: 198 DEASGTPDIINKSILGFF 215 DE S + +++L Sbjct: 252 DEMSMVELSLMQALLSAL 269 >gi|62734194|gb|AAX96303.1| Similar to probable ATP-dependent RNA helicase - fission yeast (Schizosaccharomyces pombe) [Oryza sativa Japonica Group] gi|77548994|gb|ABA91791.1| Type III restriction enzyme, res subunit family protein, expressed [Oryza sativa Japonica Group] Length = 1488 Score = 39.5 bits (90), Expect = 0.76, Method: Composition-based stats. Identities = 22/209 (10%), Positives = 51/209 (24%), Gaps = 25/209 (11%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q +F+E ++ G+GKT + A +M P I+ Sbjct: 249 REYQKKFVEK-------------ALFTNTLVALPTGLGKTFIAAVVMYNYFRWFPEGKIV 295 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A + V++ + + + + G + + + + Sbjct: 296 FTAPTR--------PLVTQQIEACHNTVGIPQEWT-IDLKGNLSPSKRSCFWKSKRVFFV 346 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK-SILGFFTELNPNRFWIMTSNT 230 T + + + + DEA ++ + + T Sbjct: 347 TPQVLQNDIQSGICMV--NQLVCLVIDEAHRASRNYAYCVVVRELEAARVPLRILALTAT 404 Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 L + D E Sbjct: 405 PGSKQPAIQNVINNLRISELVHCDESDPE 433 >gi|167854769|ref|ZP_02477547.1| type III restriction enzyme, res subunit [Haemophilus parasuis 29755] gi|167854067|gb|EDS25303.1| type III restriction enzyme, res subunit [Haemophilus parasuis 29755] Length = 1121 Score = 39.5 bits (90), Expect = 0.77, Method: Composition-based stats. Identities = 33/322 (10%), Positives = 85/322 (26%), Gaps = 49/322 (15%) Query: 39 GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98 F +Q + ++AV+ + ++ G GKT ++ Sbjct: 392 QKLENEPFDFLGLRPYQEKAIQAVEQNLSEGKRE-------MLLAMATGTGKTRTITGLI 444 Query: 99 LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 + T I+ + + + + Y + Sbjct: 445 HRFLKTDRFRRILFLVDRTALA------------EQAEDTFGGMNVEPNQTLNTLYNFAV 492 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218 + ++K T ++ ++ + P + DEA + + G Sbjct: 493 NGVVEPETKVKVATVQSLVKQIFYSGEAPAIDQFDCIIVDEAHRGYTLDQEMTDGELEFQ 552 Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE--------------GIDSG 264 + ++ S RR+ +F + + + +D Sbjct: 553 DNEQY---LSTYRRVLDYFDAVKIGLTATPALHTKEIFGEPVFVYSYKEAVIDDYLVDHE 609 Query: 265 FHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE------EAMSREAIDDLYAPL 318 I ++ D +F + + E+ +R ++D + + Sbjct: 610 PPIEIKTKLNQDGIHFERGEQLEFIDTSTGEVVLSELADEQNFDVESFNRTVLNDSFNQV 669 Query: 319 IM-----GCDIAGEGGDKTVVV 335 + D G +KT++ Sbjct: 670 VCEVLLDYLDP--FGSEKTLIF 689 >gi|169615567|ref|XP_001801199.1| hypothetical protein SNOG_10942 [Phaeosphaeria nodorum SN15] gi|160702991|gb|EAT81441.2| hypothetical protein SNOG_10942 [Phaeosphaeria nodorum SN15] Length = 1765 Score = 39.5 bits (90), Expect = 0.77, Method: Composition-based stats. Identities = 20/199 (10%), Positives = 55/199 (27%), Gaps = 25/199 (12%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +P WQ + ++ +D + A GKT ++ + M ++ + Sbjct: 718 EPDAWQRKVLDEIDA------------RRSLLVIAPTSAGKTFISFYAMKQVLESSNNDV 765 Query: 110 IICIANSETQLKNTLWAEVSKWLS--MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 ++ +A ++ + +++ + W + ++L Sbjct: 766 LVYVAPTKALVNQIAAEVQARFSKNYKYANSVWGIHTRDYRINNPTGCQILVTV------ 819 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227 + + + ++ + + DE + I + I Sbjct: 820 PHILQIMLLAPSHAKSW----SERVKWIIFDEVHCIGQAEDGVIWEQLLLM-APCPIIAL 874 Query: 228 SNTRRLNGWFYDIFNIPLE 246 S T F D + Sbjct: 875 SATIGNADAFNDWLASTQK 893 >gi|117165153|emb|CAJ88709.1| putative DEAD/DEAH box helicase [Streptomyces ambofaciens ATCC 23877] Length = 1992 Score = 39.5 bits (90), Expect = 0.77, Method: Composition-based stats. Identities = 21/162 (12%), Positives = 39/162 (24%), Gaps = 14/162 (8%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN-AWMMLWLISTRPGM 108 +P Q + V+ A G GK+ A + WL Sbjct: 383 EPRPAQQTMTTTLHDWTDRGVSGLLE--------APTGTGKSYAVLAAALDWLAGG--DS 432 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 IA QL++ + ++ LP A L + + Sbjct: 433 RTAVIATYTKQLQSQMAKDIQDLERALPGILGVADLVKGKSNRLSLAALTKTLAEAPRRR 492 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS 210 + + F + + A+ P + Sbjct: 493 RSAGTARARFSQRSRFRELAVFLALRLL---AAKEPPQSWTA 531 >gi|118380994|ref|XP_001023659.1| hypothetical protein TTHERM_00732610 [Tetrahymena thermophila] gi|89305426|gb|EAS03414.1| hypothetical protein TTHERM_00732610 [Tetrahymena thermophila SB210] Length = 1342 Score = 39.5 bits (90), Expect = 0.77, Method: Composition-based stats. Identities = 26/269 (9%), Positives = 64/269 (23%), Gaps = 30/269 (11%) Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 + G GKTT ++L + I+ A S+ + Sbjct: 908 QQLAVEKAALNRITIVQGPPGSGKTTAAVEIVLEWLRAS-NQPILVTAESQGTVNIIYGE 966 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF-- 184 + + + FE + ++ + E + SK E P++ Sbjct: 967 LIKANVKAVTIGPGFEDRLDHINEIISKPDGHEPIQKLTSKDGKHLAPKPQEYIPNSMKF 1026 Query: 185 ----------------------VGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222 H V DEA+ + ++ + Sbjct: 1027 LILKKMLREAQVVCCTCQTVMADYLKGLHFTRVIIDEANTVSEPLSLIPIHRLCNQLVLI 1086 Query: 223 FWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI 282 M S+ + + + +++ + + + Sbjct: 1087 GDHMQSSPKSQSMFAQSKGMCMS-LFEKLISQGFKPHLLKTQYRVAANQMIFQSRYFYNN 1145 Query: 283 EILG----QFPQQEVNNFIPHNYIEEAMS 307 + +F + P+ I+ + Sbjct: 1146 MLENGIVEEFKPELRGFPWPNPAIKSCVI 1174 >gi|309359628|emb|CAP32447.2| CBR-MEL-46 protein [Caenorhabditis briggsae AF16] Length = 995 Score = 39.5 bits (90), Expect = 0.77, Method: Composition-based stats. Identities = 19/156 (12%), Positives = 45/156 (28%), Gaps = 9/156 (5%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 + A G GKT + + + + + + A+ ++ T E+S + + Sbjct: 62 MLVQAKSGTGKTLVFSVLAVENLDLK--------AHYIQKVIITPTREISTQIKETVRKL 113 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 S++ G +L + ++ + + +H DE Sbjct: 114 TPAGARTSVYTGGIGHKLNVIDLK-KTRPQIVIGTPGRVAQLIRMGAMDISHVDFFVLDE 172 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 A D + K + P + + Sbjct: 173 ADKLMDEVFKPDINTIINSLPPIRQVAVFSATYPRN 208 >gi|297805512|ref|XP_002870640.1| DNA repair and transcription factor XPB1 [Arabidopsis lyrata subsp. lyrata] gi|297316476|gb|EFH46899.1| DNA repair and transcription factor XPB1 [Arabidopsis lyrata subsp. lyrata] Length = 767 Score = 39.5 bits (90), Expect = 0.77, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 50/171 (29%), Gaps = 21/171 (12%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 L+ +QP +Q + + + + + + G GK+ ++ Sbjct: 272 LDMELKPHAQPRPYQEKSLSKMFGNGRARSG--------IIVLPC-GAGKS-----LVGV 317 Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 + R S +C+A + + WA K S + S S A ++ Sbjct: 318 SAAARIKKSCLCLATNAVSVDQ--WAYQFKLWSTIRDDQICRFTSDSKERFRGNAGVVVT 375 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211 + SEE N + DE P + + + Sbjct: 376 TYN-----MIAFGGKRSEEAEKIIEEMRNREWGLLLMDEVHVVPAHMFRKV 421 >gi|258647098|ref|ZP_05734567.1| DNA helicase [Prevotella tannerae ATCC 51259] gi|260853046|gb|EEX72915.1| DNA helicase [Prevotella tannerae ATCC 51259] Length = 1099 Score = 39.5 bits (90), Expect = 0.77, Method: Composition-based stats. Identities = 21/149 (14%), Positives = 35/149 (23%), Gaps = 7/149 (4%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 I G GKT+ +L P ++ A + + V L + Sbjct: 683 IVGPPGTGKTSFGLMNILQEELLDPSALVLLTAYTNRAVDEICSKLVKANLDFVRIGKSI 742 Query: 142 EMQSL---SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + L A + + I T S + D Sbjct: 743 TCEPAYRPYLLEEQLQAANNLTDVSTIIGRHRIFVGTTSTLIANN-QLFLLRSFSLAIVD 801 Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMT 227 EAS + +L W + Sbjct: 802 EASQFLEPQ---LLPLLAAQTRQGQWGIR 827 >gi|241948421|ref|XP_002416933.1| DNA repair protein RAD16-homologue, putative; RAD family ATP-dependent helicase, putative [Candida dubliniensis CD36] gi|223640271|emb|CAX44521.1| DNA repair protein RAD16-homologue, putative [Candida dubliniensis CD36] Length = 846 Score = 39.5 bits (90), Expect = 0.77, Method: Composition-based stats. Identities = 28/209 (13%), Positives = 53/209 (25%), Gaps = 12/209 (5%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G+GKT + + S P + + E+ K + + Sbjct: 263 GMGKTIQTIGLFMHDRSKGPNLVVGPTVALMQ-----WKNEIEKHTEPGMLKVLLYHGAN 317 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF----VGPHNTHGMAVFNDEASG 202 + ++ + Y R + HN V DEA Sbjct: 318 RSNSIEELSQYDVILTSYSVLESVYRKQNYGFRRKNGLVKEKSAIHNIEFYRVILDEAHN 377 Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNT--RRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 D + + R W +T R+ + I + L+ + Y + Sbjct: 378 IKDRNSNTSRAAGKLNTKKR-WCLTGTPLQNRIGEMYSLIRYMKLDPFHSYFCTKCDCKS 436 Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQFP 289 D F +G + + F Sbjct: 437 EDWKFSDGRRCDFCQHPPMLHTNFFNHFM 465 >gi|156540980|ref|XP_001599298.1| PREDICTED: similar to ENSANGP00000009625 [Nasonia vitripennis] Length = 2129 Score = 39.5 bits (90), Expect = 0.77, Method: Composition-based stats. Identities = 24/192 (12%), Positives = 49/192 (25%), Gaps = 24/192 (12%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 + +E F Q + Q + AV + A G GKTT+ + +L Sbjct: 1308 ENLYVEKFPQFNPIQTQVFNAVYNSDD-----------NVFVGAPSGSGKTTIAEFAVLR 1356 Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 LIS P + + + E + K+ S+ ++ + Sbjct: 1357 LISQNPDGRCVYMVSKEALAEIIYSDWAYKFKSLGKKVVLLTGETGTD-----------L 1405 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220 + ++ T + + + DE + + Sbjct: 1406 KLLAKAQIIITTADKWDVLSRRWKQRKNVQNIQLFIIDELQLIGGEEGPVLEVACS--RA 1463 Query: 221 NRFWIMTSNTRR 232 R Sbjct: 1464 RYISSQLDKPTR 1475 >gi|55820924|ref|YP_139366.1| DNA endonuclease, type III restriction and modification system [Streptococcus thermophilus LMG 18311] gi|55822846|ref|YP_141287.1| DNA endonuclease, type III restriction and modification system [Streptococcus thermophilus CNRZ1066] gi|55736909|gb|AAV60551.1| DNA endonuclease, type III restriction and modification system [Streptococcus thermophilus LMG 18311] gi|55738831|gb|AAV62472.1| DNA endonuclease, type III restriction and modification system [Streptococcus thermophilus CNRZ1066] Length = 928 Score = 39.5 bits (90), Expect = 0.77, Method: Composition-based stats. Identities = 26/185 (14%), Positives = 50/185 (27%), Gaps = 20/185 (10%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q + + N +F A G GKT L A ++L+L + + Sbjct: 49 RAYQDKAIRNYHYTQTQIKPNPQHVLFNMA----TGSGKTDLMAGLILYLYQEHGYRNFL 104 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS-----GWYAELLEQSMGIDS 166 N+ + L T V++ + E+ + + + + S Sbjct: 105 FTVNTNSVLMKTKDNLVNENSEKYLFKDKIEIDGKHIFIKQVERFPRIQQDNTIYIKLSS 164 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP----------DIINKSILGFFT 216 +E N +AV DEA + +I Sbjct: 165 VQKVSDDLFVLKENTMGLSDYENQ-PVAVLADEAHHYSASTKSEKEAENTWESAINKILR 223 Query: 217 ELNPN 221 + Sbjct: 224 ARDDK 228 >gi|291516530|emb|CBK70146.1| TrwC relaxase [Bifidobacterium longum subsp. longum F8] Length = 1368 Score = 39.5 bits (90), Expect = 0.78, Method: Composition-based stats. Identities = 38/299 (12%), Positives = 70/299 (23%), Gaps = 46/299 (15%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 + G GKT + + + R + IA + EV Sbjct: 485 VVEGAAGAGKTHMLNAVNDY---CRENGKRLVIATPTQKAALVAGEEVG----------- 530 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT----FVGPHNTHGMAVF 196 A + S+ R +T + Sbjct: 531 ---TGTGTLMRLLEAYGWRNDETDPEHPWYRVAEGQSDHRGNTYRGVPDEYRLDRDTFLV 587 Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256 DEA ++L E + +T +LN E + + R Sbjct: 588 VDEAGMMDQDQALALLRVADETGARL--TLVGDTMQLNAVGRGGVMQLAERYTGNVVAMR 645 Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILGQF--------PQQEVNNF--IPHNYIEEA- 305 V + R + + G+ + I ++E Sbjct: 646 DVHRFKDPDYAAYTIRLRERTPANAERLAGELFDRGMVRHWDSDEATVNAIAAAWMEHPD 705 Query: 306 ------MSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQ 358 +R+A + A + D AG+ GD+ G I ++ Sbjct: 706 TTISTVTNRQAAEVNRAIQRLRLD-AGQLGDERCASMIDGQEIHV-----GDIVMTRRN 758 >gi|39996461|ref|NP_952412.1| helicase [Geobacter sulfurreducens PCA] gi|39983341|gb|AAR34735.1| helicase, putative [Geobacter sulfurreducens PCA] Length = 1041 Score = 39.5 bits (90), Expect = 0.78, Method: Composition-based stats. Identities = 27/186 (14%), Positives = 60/186 (32%), Gaps = 29/186 (15%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM-LWLISTRPGMS 109 PH +Q +EA++ S ++ + A G GKT + A+ + + Sbjct: 309 PHPFQERILEALE------RERSAHDRWRNLVIAATGTGKTVVAAFDFKRFYEQKQKQAK 362 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 ++ +A+ + L + + ++L +++ E+Q + M + + Sbjct: 363 LLFLAHRQ----EILQQALGTFRNILRDQNFGELQVGPYDATRLEHLFCSVGMLTSRRLW 418 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 + DEA S F +P +T+ Sbjct: 419 EQVGP---------------DFYDYIVIDEAH---HGTAGSYRPIFNHFSPQILLGLTAT 460 Query: 230 TRRLNG 235 R++G Sbjct: 461 PERMDG 466 >gi|312622203|ref|YP_004023816.1| hypothetical protein Calkro_1135 [Caldicellulosiruptor kronotskyensis 2002] gi|312202670|gb|ADQ45997.1| protein of unknown function DUF815 [Caldicellulosiruptor kronotskyensis 2002] Length = 440 Score = 39.5 bits (90), Expect = 0.79, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 65/223 (29%), Gaps = 19/223 (8%) Query: 15 LHEMLMHAECVLSFKNFVMR-FFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNS 73 L E L+ F F F W GK L +L+ + +D V N+ Sbjct: 173 LIEELVEFHRQNGFGIFAKYKGFSW--DGKKLIGIENLDPIRLDSLVNIDRQKKIVVENT 230 Query: 74 NPT-----IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEV 128 + + RG GK++ ++ + + + QL + + Sbjct: 231 LAFLNGQRVNNILLYGSRGTGKSSTVKALLNEFHHMG----LRIVEVYKDQLYT--FPRL 284 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188 + L +P + + LS L+ + + Y+ V Sbjct: 285 IRILRDVPLKFIIFVDDLSFEDIEENYTKLKAILEGSLEAMPQNVVIYATSNRRHLVKER 344 Query: 189 NTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 + ++ +DE N ++ + + + + Sbjct: 345 FSDRSSLSDDEVHF-----NDTLDEKLSLADRFGIVVTYPSPT 382 >gi|295400608|ref|ZP_06810586.1| Type III site-specific deoxyribonuclease [Geobacillus thermoglucosidasius C56-YS93] gi|294977511|gb|EFG53111.1| Type III site-specific deoxyribonuclease [Geobacillus thermoglucosidasius C56-YS93] Length = 722 Score = 39.5 bits (90), Expect = 0.79, Method: Composition-based stats. Identities = 32/243 (13%), Positives = 65/243 (26%), Gaps = 19/243 (7%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q+E + + + P ++ G GKT L A +L+ + Sbjct: 39 RPYQIEALRRLLFYFEHYRQKELPVHLLYEMATG--SGKTLLMAANILYFYEKGYRYFLF 96 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEM------QSLSLHPSGWYAELLEQSMGID 165 + ++ N + + +L+ ++ F Q + + + E + + I Sbjct: 97 FVNST-----NIIEKTKNNFLNPASTKYLFAPRIRIYQQDVRIREIQNFQEGNDDDINIL 151 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFN-DEASGTPDIINKSILGFFTELNPNRFW 224 +T V DEA + + E W Sbjct: 152 FMTIQGLHSKLYAPSENTLTFEDFDDRKIVLLSDEAHHMNALTKNKLSK--EEQLEKHTW 209 Query: 225 IMTSN---TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR 281 T N TR + + + E RY D + R Sbjct: 210 EYTINEIFTRNKENVMLEYTATAELQHPAVREKYKNKAIYKYSLKEFREDRYSKDVKLLR 269 Query: 282 IEI 284 ++ Sbjct: 270 SDV 272 >gi|284928939|ref|YP_003421461.1| cob(I)yrinic acid a,c-diamide adenosyltransferase [cyanobacterium UCYN-A] gi|284809398|gb|ADB95103.1| cob(I)yrinic acid a,c-diamide adenosyltransferase [cyanobacterium UCYN-A] Length = 205 Score = 39.5 bits (90), Expect = 0.79, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 3/119 (2%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 ++Q + + + V S I+ G G GKTT M+L + ++II Sbjct: 10 EQYQQKMEQRKKIQEQRLVEASKKKGL-IIINTGHGKGKTTAALGMVLRSLGHGFQVAII 68 Query: 112 -CIANSETQLKNTLWAEVSKWLSMLPHRHWFEM-QSLSLHPSGWYAELLEQSMGIDSKH 168 + + + +++ K + F E E+S+ + Sbjct: 69 QFVKGAWEPAEKSIFKSFGKQIEFYAMGEGFTWETQDRERDIFKAKEAWEKSLSYINNS 127 >gi|119181996|ref|XP_001242158.1| hypothetical protein CIMG_06054 [Coccidioides immitis RS] gi|121937034|sp|Q1DUF9|INO80_COCIM RecName: Full=Putative DNA helicase INO80 Length = 1662 Score = 39.5 bits (90), Expect = 0.79, Method: Composition-based stats. Identities = 23/188 (12%), Positives = 46/188 (24%), Gaps = 17/188 (9%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G+GKT + +M +L + + L N E+ K++ L ++ Sbjct: 824 GLGKTVQSISVMAYLAEVHDIWGPFLVVAPSSTLHN-WQQEIVKFVPDLKVLPYWGSAKD 882 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + +++ + T + + DEA Sbjct: 883 RKVLRKF---WDRRNITYRKQSEFHVLVTSYQLVVGDAQYFQKIKWQYMILDEAQAIKSS 939 Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW---KRYQIDTRTVEGIDS 263 S ++ ++T I N E W S Sbjct: 940 Q-SSRWKSLLGMHCRNRLLLTGTP---------IQNNMQELWALLHFIMPTLFDSHDEFS 989 Query: 264 GFHEGIIS 271 + I Sbjct: 990 EWFSKDIE 997 >gi|223997592|ref|XP_002288469.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220975577|gb|EED93905.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 1287 Score = 39.5 bits (90), Expect = 0.79, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 53/177 (29%), Gaps = 12/177 (6%) Query: 60 EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119 + H + + I + G G GKT ++ PG + I + ++ Sbjct: 352 RRLFQHQTQAIEAAMNDIH-TVVCTGTGSGKTMCFLLPVIAKALASPGSASILLFPTKAL 410 Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS-------MGIDSKHYTIT 172 ++ ++++ L LP+ ++ L ++ + + + Sbjct: 411 AQDQ-YSKIKTLLQSLPNEPSTDIPPLHAGVIDGDTPHAQRDAIATDCQIILTNPDTIHA 469 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 S +RP V DEA D + + + +S+ Sbjct: 470 ALLPSWKRPSYKQLL--ARIDTVVIDEAH-VYDGTFGAHVAMVLSRLKRVCRVASSS 523 >gi|198274910|ref|ZP_03207442.1| hypothetical protein BACPLE_01069 [Bacteroides plebeius DSM 17135] gi|198272357|gb|EDY96626.1| hypothetical protein BACPLE_01069 [Bacteroides plebeius DSM 17135] Length = 739 Score = 39.5 bits (90), Expect = 0.79, Method: Composition-based stats. Identities = 24/187 (12%), Positives = 44/187 (23%), Gaps = 13/187 (6%) Query: 55 QLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 Q E + H + P + + G GKT + + II Sbjct: 218 QTELNQLRRKIQHLCGEKSIKEPGFYSLTV--PTGGGKTLSSLLWAVKHAVKYGKDRIII 275 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY--- 169 + + + T + H + + LE + S+++ Sbjct: 276 VIPYTSIIVQTAAILRKIFGDENVCEHHSSFDFEEVWKDKPDSSQLELQQRLASENWDYP 335 Query: 170 ------TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223 + +P HN V DE P + I+ Sbjct: 336 IIVTTNVQFFESLFGNKPSVCRKLHNIANSVVILDEIQTLPREYLQPIVNAMDSYQRLFG 395 Query: 224 WIMTSNT 230 T Sbjct: 396 VSFLFTT 402 >gi|220917833|ref|YP_002493137.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219955687|gb|ACL66071.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 652 Score = 39.5 bits (90), Expect = 0.79, Method: Composition-based stats. Identities = 19/149 (12%), Positives = 38/149 (25%), Gaps = 18/149 (12%) Query: 60 EAVDVHCHSNVNNSNPTIFK-------CAISAGRGIGKTTLNAWMMLWLI-STRPGMSII 111 AV H ++ F+ + + G GKT + +L I R S + Sbjct: 33 RAVAEHGYTKPTPVQSATFRPIRDGKDVIVRSKTGTGKTAAFSIPILERIPDGRRKPSAL 92 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + + + + + L + A + +Q + + + Sbjct: 93 VMCPTRELAIQVAEEVTA----------LAKHRDLGVVTIYGGASMGDQLDKLKAGAEIV 142 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 M DEA Sbjct: 143 VGTPGRIYDHIRRKTLRLEEVMVCCLDEA 171 >gi|197123043|ref|YP_002134994.1| DEAD/DEAH box helicase [Anaeromyxobacter sp. K] gi|196172892|gb|ACG73865.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp. K] Length = 651 Score = 39.5 bits (90), Expect = 0.79, Method: Composition-based stats. Identities = 19/149 (12%), Positives = 38/149 (25%), Gaps = 18/149 (12%) Query: 60 EAVDVHCHSNVNNSNPTIFK-------CAISAGRGIGKTTLNAWMMLWLI-STRPGMSII 111 AV H ++ F+ + + G GKT + +L I R S + Sbjct: 33 RAVAEHGYTKPTPVQSATFRPIRDGKDVIVRSKTGTGKTAAFSIPILERIPDGRRKPSAL 92 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + + + + + L + A + +Q + + + Sbjct: 93 VMCPTRELAIQVAEEVTA----------LAKHRDLGVVTIYGGASMGDQLDKLKAGAEIV 142 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 M DEA Sbjct: 143 VGTPGRIYDHIRRKTLRLEEVMVCCLDEA 171 >gi|332795755|ref|YP_004457255.1| DEAD/DEAH box helicase domain-containing protein [Acidianus hospitalis W1] gi|332693490|gb|AEE92957.1| DEAD/DEAH box helicase domain protein [Acidianus hospitalis W1] Length = 740 Score = 39.5 bits (90), Expect = 0.80, Method: Composition-based stats. Identities = 25/190 (13%), Positives = 52/190 (27%), Gaps = 24/190 (12%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 ++Q + +E + + I +G G GKT +L L I+ Sbjct: 58 KFQEKALEEI------------ESRKNVLIISGTGTGKTEAFLIPILDLALKGEKSVIVY 105 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 ++ ++ L + + + LP + I + Sbjct: 106 --PTKALARDQLSR-ILRLIKNLPINVGIIDGDTPKIERDRLY-ASPPDILITNPDMIHV 161 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEAS---GTPDIINKSILGFFTELNPNRFWIMTSN 229 S P+ + DE G + I+ E + I +S Sbjct: 162 GLPLS---PNFRRIIRSAEH--FVFDEIHVYEGVLGSHLRMIIDRLKEFTNDIHIIASSA 216 Query: 230 TRRLNGWFYD 239 T + + + Sbjct: 217 TIGASPYMFQ 226 >gi|327271453|ref|XP_003220502.1| PREDICTED: probable ATP-dependent RNA helicase DDX20-like [Anolis carolinensis] Length = 752 Score = 39.5 bits (90), Expect = 0.80, Method: Composition-based stats. Identities = 24/171 (14%), Positives = 47/171 (27%), Gaps = 17/171 (9%) Query: 80 CAISAGRGIGKTTLNAWMMLW-LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + A G GKT + + + L LI P I+ +A + E++ + + Sbjct: 65 LIVQAKSGTGKTCVFSTVALDSLILESPVTQILVLAPT---------REIAVQIHAVITT 115 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 +M+ L H L + + K + ++ + + D Sbjct: 116 IGIKMEGLECHVFIGGTPLNQDKTRL-KKCHIAVGTPGRIKQLIELDFLNTSSIRLFILD 174 Query: 199 EASGTPD-----IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244 EA + I N + + L P Sbjct: 175 EADKLLEEGSFQEQINWIYSSL-PANKQMLAVSATYPESLANTLTRYMRDP 224 >gi|295669542|ref|XP_002795319.1| DNA replication ATP-dependent helicase dna2 [Paracoccidioides brasiliensis Pb01] gi|226285253|gb|EEH40819.1| DNA replication ATP-dependent helicase dna2 [Paracoccidioides brasiliensis Pb01] Length = 1492 Score = 39.5 bits (90), Expect = 0.80, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 35/118 (29%), Gaps = 3/118 (2%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTT A ++ G S++ + + T + N L + L ++ Sbjct: 977 GTGKTTTIAHII--RALVSQGKSVLLTSYTHTAVDNILLKIKDDNIRTLRLGATTKIHPD 1034 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + A + + + + + +N DEAS Sbjct: 1035 VQKFADLAATPKKTIEELRDIYENSLVVATTCLGINHP-IFNNRIFNYCIVDEASQIT 1091 >gi|259907267|ref|YP_002647623.1| Non-specific serine/threonine protein kinase [Erwinia pyrifoliae Ep1/96] gi|224962889|emb|CAX54370.1| Non-specific serine/threonine protein kinase [Erwinia pyrifoliae Ep1/96] gi|283477080|emb|CAY72980.1| SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [Erwinia pyrifoliae DSM 12163] Length = 1081 Score = 39.5 bits (90), Expect = 0.81, Method: Composition-based stats. Identities = 30/226 (13%), Positives = 57/226 (25%), Gaps = 22/226 (9%) Query: 87 GIGKTTLNAWMMLWLISTRPGMS-IICIANSETQLKNTLWAEVSKW--------LSMLPH 137 G+GKT +++W I P + +A L + E+ + L + Sbjct: 612 GLGKTLQILALLVWNIEQNPDGEPGLIVAPV--SLLDNWQRELDNFFYTTGIPVLKLYGD 669 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 P A+ ++ + + T E D + Sbjct: 670 TIGAMKYRQQDIPVHLKAQGIKSLLQPGWRGEAKIVLTTYETLRDQEFSLARQPWSIMVC 729 Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN--------GWFYDIFNIPLEDWK 249 DEA + I + T + L ++ Sbjct: 730 DEAQKIKNPA-ALITQAANAVQARFKVACTGTPVENTLVDLWSLFDFVQPGLLGALNEFG 788 Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI--EILGQFPQQEV 293 + + T E + R + R E+ G PQ+ Sbjct: 789 KRYVRTIENEDGRHHRALEQLRRLIEPQTLRRTKEEVAGDLPQKIE 834 >gi|145349424|ref|XP_001419134.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579365|gb|ABO97427.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 1767 Score = 39.5 bits (90), Expect = 0.81, Method: Composition-based stats. Identities = 27/189 (14%), Positives = 51/189 (26%), Gaps = 19/189 (10%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL-SMLPH 137 + A G GKT M+ + PG ++ IA + ++ + W ++ P Sbjct: 931 NVLLGAPTGSGKTISAELSMMKVFRDSPGSKVVYIAPLKALVRER----IKDWRKNLCPT 986 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 ++ + A L + + + R + T V Sbjct: 987 LGLRMVELTGDYTPDLRALLQADIIVSTPEKWDGISRNWQSRAYVT-------KVALVVI 1039 Query: 198 DEAS-------GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250 DE ++I + N + S D I E Sbjct: 1040 DEIHLLASDRGPILEVIVSRMRYISARTGSNVRIVGLSTALANARDLGDWLGIDKEGLFN 1099 Query: 251 YQIDTRTVE 259 ++ R V Sbjct: 1100 FRPSVRPVP 1108 >gi|156741590|ref|YP_001431719.1| helicase domain-containing protein [Roseiflexus castenholzii DSM 13941] gi|156232918|gb|ABU57701.1| helicase domain protein [Roseiflexus castenholzii DSM 13941] Length = 1129 Score = 39.5 bits (90), Expect = 0.81, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 55/224 (24%), Gaps = 29/224 (12%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 + + I+ G GKT + ++ + I+ +A L++ E+ + Sbjct: 116 HQPRVRFLIADDPGAGKTIMAGLVIKEMKLRGLVRRILIVAP--GHLRDQWQRELKERF- 172 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + M ++ + + + D H Sbjct: 173 ---DERFVLMDRQTMRNRFGENAWES--------EFQVITSLDFARQEDVMQALAGAHWD 221 Query: 194 AVFNDEASGTP--------DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIF---- 241 DEA + + LG N + +T+ R + + +F Sbjct: 222 LTIVDEAHKMAAYKYGDKMEKTKRYRLGELLSRNSTQLLFLTATPHRGDPENFRLFLDLL 281 Query: 242 ---NIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI 282 D I E + G + R Sbjct: 282 QPGAFATVDMLDESIRAGDNPLFIRRLKEDLKDFEGKPLFLPRQ 325 >gi|315608532|ref|ZP_07883517.1| type I restriction-modification system R subunit [Prevotella buccae ATCC 33574] gi|315249780|gb|EFU29784.1| type I restriction-modification system R subunit [Prevotella buccae ATCC 33574] Length = 763 Score = 39.5 bits (90), Expect = 0.81, Method: Composition-based stats. Identities = 42/307 (13%), Positives = 92/307 (29%), Gaps = 43/307 (14%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 + +P +Q +E + + I G GKT ++ L ++ Sbjct: 158 YTYEPRYYQRIAVERTVEAIAKGKD-------RVLIVMATGTGKTITAFQIIHRLKASGA 210 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 I+ +A+ + T+ + P + + S + + + + Sbjct: 211 KKKILYLADRNILIDQTMVQDFK------PFKKIMTKIQGAAIDSAYEVHMALYHQLVSN 264 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226 + E D F T + DE + + N M Sbjct: 265 E----------EGVEDPFRQVQPTFFDLIIVDECHRGSAKDDSAWRKVLEYFNTATQIGM 314 Query: 227 TSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILG 286 T+ + NG +D +GI D +A + Sbjct: 315 TATPKAENG--------------ANNLDYFGEPVFTYSLLQGI-----QDGFLAPYRVTN 355 Query: 287 QFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIF 346 + ++ F P+ ++ + R+ + LY +G DIA + +V R +++ I Sbjct: 356 SYISIDLQGFKPNEDEKDLLGRDIVQRLYERKDIGRDIAFTKR-REIVAKRITKMLKQIG 414 Query: 347 DWSAKLI 353 + ++ Sbjct: 415 RMTKTIV 421 >gi|23099217|ref|NP_692683.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon [Oceanobacillus iheyensis HTE831] gi|22777446|dbj|BAC13718.1| ATP-dependent DNA helicase [Oceanobacillus iheyensis HTE831] Length = 939 Score = 39.5 bits (90), Expect = 0.81, Method: Composition-based stats. Identities = 22/180 (12%), Positives = 46/180 (25%), Gaps = 25/180 (13%) Query: 23 ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82 SF N++ + G K + Q E E + S+ + I Sbjct: 231 NVDTSFGNYLDTIYEDGGKLSEHLSMYEKRAGQQEMSETIYDAFTSSNHA--------LI 282 Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 AG G GK+ L + + + +I ++ L E+ ++ Sbjct: 283 EAGTGTGKS-LAYLLPAVYYAVKQNQKVIISTHTTQLQSQLLEEEIPLIHAISDIPFQAA 341 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 + E+ D + + ++ E + Sbjct: 342 LLKG----------------KNHYISLEKFSIELYEQGQDNYDIALTKAMLLIWITETNT 385 >gi|160891733|ref|ZP_02072736.1| hypothetical protein BACUNI_04188 [Bacteroides uniformis ATCC 8492] gi|156859140|gb|EDO52571.1| hypothetical protein BACUNI_04188 [Bacteroides uniformis ATCC 8492] Length = 375 Score = 39.5 bits (90), Expect = 0.82, Method: Composition-based stats. Identities = 32/259 (12%), Positives = 70/259 (27%), Gaps = 34/259 (13%) Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN----SETQLKN 122 + + + + R GK++L M L + + I +E + Sbjct: 23 RKQLKELLGSGINVMLISPRRWGKSSLVKVAMDELTQEDKHIRVCFIDAFSIKTEAEFYR 82 Query: 123 TLWAEVSKWLSMLPHRHWFEMQSL------SLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 EV + + +++ S+ + L + ++ + ++ Sbjct: 83 IFAREVISCAASTLEKRLEDVKQFLKAVSPSITLKSDPTDTLSFDLKLELEEKSVMEILE 142 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDII-NKSILGFFTELNPNRFWIMT-------- 227 E+ G H + V DE + KS+ G + + Sbjct: 143 LPEKIAAAKGIH----LIVCIDEFQQLALLPGYKSMEGKMRSAWQKQQQVSYCFYGSKRH 198 Query: 228 ---------SNTRRLNGWFYDIFNIPLEDWKRYQID--TRTVEGIDSGFHEGIISRYGLD 276 SN G + I E+W + ++ RT + I E + Sbjct: 199 MMMDIFNNSSNPFYRFGQVLFLQKIKKEEWVPFIVNAFHRTNKEISEQQAEQLCDIVKCH 258 Query: 277 SDVARIEILGQFPQQEVNN 295 S + + Sbjct: 259 SWYLQQLCYFIWSGTSEKV 277 >gi|254284934|ref|ZP_04959900.1| phage terminase large subunit (GpA) [Vibrio cholerae AM-19226] gi|150424937|gb|EDN16714.1| phage terminase large subunit (GpA) [Vibrio cholerae AM-19226] Length = 632 Score = 39.5 bits (90), Expect = 0.82, Method: Composition-based stats. Identities = 25/237 (10%), Positives = 63/237 (26%), Gaps = 29/237 (12%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 +PT K G +GK+ ++ W + P II + +E+ + N + ++ + Sbjct: 10 DPTYSKITFVMGTQMGKSATMQNVIGWRLDDLPAP-IIYVGPTESNINNVVEPKIMEMFR 68 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + ++ I + + + + Sbjct: 69 ECQ------------------SLWIKYDDKSPKHKKRIGGVSLRFAWAGSATELASDSAV 110 Query: 194 AVFNDE-----ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW 248 DE A+ T + I + + +TS + + W Sbjct: 111 ITLVDELDRPDANATGEGSLSEIAEARGDAYIDSKLGLTSTPTHGKASTFVHPETGVTHW 170 Query: 249 KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEE 304 + + +G + + G+ F + + P ++ Sbjct: 171 AVAPKGKVSSPIW-LEWEQGTRHEWAVPCPDPD---CGEYFIPRSELLWWPGKGTDK 223 >gi|19115394|ref|NP_594482.1| DEAD/DEAH box helicase [Schizosaccharomyces pombe 972h-] gi|74698339|sp|Q9P7T8|YIW2_SCHPO RecName: Full=Uncharacterized helicase C694.02 gi|6901197|emb|CAB71840.1| DEAD/DEAH box helicase [Schizosaccharomyces pombe] Length = 1717 Score = 39.5 bits (90), Expect = 0.82, Method: Composition-based stats. Identities = 20/168 (11%), Positives = 47/168 (27%), Gaps = 25/168 (14%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P WQ E ++ +D + A GKT ++ + M ++ + Sbjct: 736 PDEWQRETLDILDRDES------------VFVVAPTSSGKTFISFYAMEKVLRDNDDGVV 783 Query: 111 ICIANSE---TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 I +A ++ QL ++A +K W + ++L Sbjct: 784 IYVAPTKALVNQLSAEVYARFNKHYPHAGQTVWSVYTRDYRINNPTNCQVLITV------ 837 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 + + + + + DE + + + Sbjct: 838 PHVLQSMLLQPALANAW----CPKIRRIIFDEIHCIGQMEDGLVEEQL 881 >gi|150389449|ref|YP_001319498.1| CRISPR-associated helicase Cas3 [Alkaliphilus metalliredigens QYMF] gi|149949311|gb|ABR47839.1| CRISPR-associated helicase Cas3 [Alkaliphilus metalliredigens QYMF] Length = 798 Score = 39.5 bits (90), Expect = 0.82, Method: Composition-based stats. Identities = 25/197 (12%), Positives = 44/197 (22%), Gaps = 7/197 (3%) Query: 38 WGIKGKPLEHF--SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95 W LE S P +++ + N + I++ A+ G GKT + Sbjct: 227 WNELADVLEVKLKSYPKSGKIDLLREEVSIACKNFGENKTGIYQLAV--PTGGGKTLSSL 284 Query: 96 WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 L + I T + + + Sbjct: 285 RYALQHAKKFNKERVFYIIPFTTIIDQNAKDIKDILGREDIILEHHSNLVVDNDQEEYKL 344 Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII---NKSIL 212 I T HN + DE P S + Sbjct: 345 LTERWDSPIVLTTMVQFLDTLFSGGTQGVRRMHNLTNSIIIFDEIQAIPIKCINMFNSAI 404 Query: 213 GFFTELNPNRFWIMTSN 229 F + + + T+ Sbjct: 405 NFLSNICNATIILCTAT 421 >gi|253699452|ref|YP_003020641.1| hypothetical protein GM21_0812 [Geobacter sp. M21] gi|251774302|gb|ACT16883.1| conserved hypothetical protein [Geobacter sp. M21] Length = 486 Score = 39.5 bits (90), Expect = 0.83, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 43/166 (25%), Gaps = 22/166 (13%) Query: 37 PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96 PW G F W+ V P +S R IGKTTL Sbjct: 19 PWWSGG----RFQDLPTWRRAAFREVHDWLK-----DPPAGRALLLSGARQIGKTTLLLQ 69 Query: 97 MMLWLISTR-PGMSIICIANSETQLKNT-------LWAEVSKWLSMLPHRHWFEMQSLSL 148 + L+ P +I+ LK LW E + + E+Q+ Sbjct: 70 AIDVLLDQGVPPTNILYATFDHPLLKLIGLDGLLRLWREFEPAREGVEYIFLDEIQATKD 129 Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 L+ + + + + + + Sbjct: 130 W-----QVWLKHQVDFEKRRRIAVTGSATPLETEGLESGVGRWHTI 170 >gi|254580319|ref|XP_002496145.1| ZYRO0C11528p [Zygosaccharomyces rouxii] gi|238939036|emb|CAR27212.1| ZYRO0C11528p [Zygosaccharomyces rouxii] Length = 1510 Score = 39.5 bits (90), Expect = 0.83, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 39/130 (30%), Gaps = 5/130 (3%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTT+ A ++ L S G ++ + + + + N L ++++ ++ Sbjct: 1046 GSGKTTVIAQIIKILASR--GQKVLLTSYTHSAVDNILLKLKGSPINIIRLGSARKIHPE 1103 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 Y + + T T D F DEAS Sbjct: 1104 IHEYQPSYQDAESYEDIMKQISDTQVVATTCLGLNDIFFTLQQKDFDYAILDEASQIS-- 1161 Query: 207 INKSILGFFT 216 LG Sbjct: 1162 -MPVALGPLR 1170 >gi|157128662|ref|XP_001661489.1| U520 [Aedes aegypti] gi|108872530|gb|EAT36755.1| U520 [Aedes aegypti] Length = 2075 Score = 39.5 bits (90), Expect = 0.83, Method: Composition-based stats. Identities = 21/221 (9%), Positives = 49/221 (22%), Gaps = 28/221 (12%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 + F Q + Q + AV + A G GKTT+ + +L ++ Sbjct: 1255 DKFPQFNPIQTQVFNAVYNSED-----------NVFVGAPTGSGKTTIAEFAVLRMLQQN 1303 Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 P ++ + + ++ + W F + + Sbjct: 1304 PHGRVVYLVSRDSLAELI----FMDWHQK------FGQHLGCKVVKLTGETGTDLKLIAK 1353 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN------ 219 + T + + + DE + + + Sbjct: 1354 GQIIVTTADKWDILSRRWKQRKNVQNIQLFIVDELQLIGGEEGPVLEVVCSRMRYISSQI 1413 Query: 220 -PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 I S + + R + Sbjct: 1414 EKQIRIIALSASLSDARDVAQWLGCNANATFNFHPSVRPIP 1454 >gi|86607265|ref|YP_476028.1| DEAD-box ATP dependent DNA helicase [Synechococcus sp. JA-3-3Ab] gi|86555807|gb|ABD00765.1| ATP-dependent helicase, DEAD/DEAH box family [Synechococcus sp. JA-3-3Ab] Length = 803 Score = 39.5 bits (90), Expect = 0.83, Method: Composition-based stats. Identities = 33/294 (11%), Positives = 81/294 (27%), Gaps = 38/294 (12%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q+ ++A+ + A G GKT L ++ ++ G + Sbjct: 24 DEFQIRAIQALAAGES------------VVVCAPTGSGKT-LIGEYAIYRALSQ-GKRVF 69 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWF-EMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 L N + + + ++ P + ++M + Sbjct: 70 YTTP-LKALSNQKFRDFGQQFGPERVGLLTGDISINREAPILVMTTEIFRNMLYGTPLSL 128 Query: 171 ITCRTYSEERPDTFVGPHNTHGM------AVFNDEASGTPDI-----INKSILGFFTELN 219 + D + AV DE D ++I+ + Sbjct: 129 AVQQGAYASEMDAWEQAEALSRDPLQDVQAVILDECHYMNDQQRGTVWEEAIIYCPAHIQ 188 Query: 220 PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279 +N+ +L W + ++ + ++ + V Sbjct: 189 LVALSATLANSDQLTDWMNQVHGPTRLIDSSHRPVPLQFHFANRKGLFPLLEQTESGQWV 248 Query: 280 ARIEILGQFPQQEVNNF--IP--HNYIEEAMSREAIDDLYAPLIM----GCDIA 325 + + P+ +++ +P +E R+ + A + GCD+A Sbjct: 249 CNRRLKSKLPKSGQSSYGGVPDMVQVVENLRQRDMLP---AIYFIFSRKGCDLA 299 >gi|238879242|gb|EEQ42880.1| DNA repair protein RAD16 [Candida albicans WO-1] Length = 852 Score = 39.5 bits (90), Expect = 0.83, Method: Composition-based stats. Identities = 30/209 (14%), Positives = 53/209 (25%), Gaps = 12/209 (5%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G+GKT + + S P + I E+ K + S Sbjct: 269 GMGKTIQTIGLFMHDRSKGPNLVIGPTVALMQ-----WKNEIEKHTEPGMLKVLLYHGSN 323 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF----VGPHNTHGMAVFNDEASG 202 + ++ + Y +R + HN V DEA Sbjct: 324 RSNSIQELSQYDVILTSYSVLESVYRKQNYGFKRKNGLVKEKSAIHNIEFYRVILDEAHN 383 Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNT--RRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 D + + R W +T R+ + I + L+ + Y + Sbjct: 384 IKDRNSNTSRAAGKLNTKKR-WCLTGTPLQNRIGEMYSLIRYMKLDPFHSYFCTKCDCKS 442 Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQFP 289 D F +G + F Sbjct: 443 EDWKFSDGRRCDLCQHPPMLHTNFFNHFM 471 >gi|224012567|ref|XP_002294936.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335] gi|220969375|gb|EED87716.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335] Length = 224 Score = 39.5 bits (90), Expect = 0.83, Method: Composition-based stats. Identities = 24/182 (13%), Positives = 51/182 (28%), Gaps = 12/182 (6%) Query: 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 W E + + + +S G+GKT + A +M P ++ Sbjct: 1 WIYPVDEKYPERSYQLQMSQTAIMANTLVSLPTGLGKTLIAAVVMYNYYRWFPTGKVVFC 60 Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173 A + + ++ ++ + SG ++M + + T Sbjct: 61 APTRPLVTQ----QIQACYKIMGIPELHTAE-----ISGRSKPESRENMWNSKRVFFCTP 111 Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL-GFFTELNPNRFWIMTSNTRR 232 T ++ + V DEA ++L E + S T Sbjct: 112 HTLVKDIEGGRCD--AKSIVCVVMDEAHRATGNHANALLVNMIEEAGAKFRLVGLSATPG 169 Query: 233 LN 234 + Sbjct: 170 TD 171 >gi|167524609|ref|XP_001746640.1| hypothetical protein [Monosiga brevicollis MX1] gi|163774910|gb|EDQ88536.1| predicted protein [Monosiga brevicollis MX1] Length = 1507 Score = 39.5 bits (90), Expect = 0.83, Method: Composition-based stats. Identities = 24/176 (13%), Positives = 43/176 (24%), Gaps = 23/176 (13%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L F+ + Q + V H + A G GKT + A + L+ + Sbjct: 1267 LYRFTHFNPVQTQVFHTVYHTDH-----------NVLLGAPTGSGKT-VVAELALYRLFR 1314 Query: 105 -RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163 PG + IA + ++ + + L R E+ + Sbjct: 1315 EHPGKKAVYIAPLKALVRERMDDWQIRLQQKLGRRV-VELTGDVTPDARAIERADVIVTT 1373 Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219 + + V DE I + N Sbjct: 1374 PEKWDGISRSWQNRDYV---------RKVTLVIIDEIHLLGGDRGPVIEVIVSRTN 1420 >gi|153005573|ref|YP_001379898.1| PhoH family protein [Anaeromyxobacter sp. Fw109-5] gi|152029146|gb|ABS26914.1| PhoH family protein [Anaeromyxobacter sp. Fw109-5] Length = 356 Score = 39.5 bits (90), Expect = 0.83, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 36/129 (27%), Gaps = 14/129 (10%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT L M + + R I+ + + L + + Sbjct: 143 GTGKTYLAMAMAVSFLVERKVKRIVLTRPA------------VEAGEKLGFLPGDIAEKV 190 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + + + L M K R E P F+ + + DEA T + Sbjct: 191 NPYLRPLHDALF--DMVDYEKATAFMERGTVEVAPLAFMRGRTLNDAFIILDEAQNTTEE 248 Query: 207 INKSILGFF 215 K L Sbjct: 249 QMKMFLTRL 257 >gi|89242736|gb|AAS49486.2| polyprotein [Dengue virus 3] Length = 3390 Score = 39.5 bits (90), Expect = 0.83, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPTIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|13811296|gb|AAK40099.1|AF339908_1 RNA helicase SDE3 [Arabidopsis thaliana] Length = 1002 Score = 39.5 bits (90), Expect = 0.83, Method: Composition-based stats. Identities = 20/163 (12%), Positives = 48/163 (29%), Gaps = 14/163 (8%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ L +T+ ++ A S + + L + + F + + Sbjct: 424 GTGKTMTLVEAIVQLYTTQRNARVLVCAPSNSAADHILEKLLCLEGVRIKDNEIFRLNAA 483 Query: 147 SLHPSGWYAELLE-----------QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 + E++ + +++ + S + H + Sbjct: 484 TRSYEEIKPEIIRFCFFDELIFKCPPLKALTRYKLVVSTYMSASLLNAEGVKRG-HFTHI 542 Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 DEA + N + ++ + R+L Y Sbjct: 543 LLDEAGQASEPENMIAVSNLCL--TETVVVLAGDPRQLGPVIY 583 >gi|68468819|ref|XP_721468.1| hypothetical protein CaO19.2969 [Candida albicans SC5314] gi|68469363|ref|XP_721196.1| hypothetical protein CaO19.10486 [Candida albicans SC5314] gi|46443104|gb|EAL02388.1| hypothetical protein CaO19.10486 [Candida albicans SC5314] gi|46443387|gb|EAL02669.1| hypothetical protein CaO19.2969 [Candida albicans SC5314] Length = 852 Score = 39.5 bits (90), Expect = 0.83, Method: Composition-based stats. Identities = 30/209 (14%), Positives = 53/209 (25%), Gaps = 12/209 (5%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G+GKT + + S P + I E+ K + S Sbjct: 269 GMGKTIQTIGLFMHDRSKGPNLVIGPTVALMQ-----WKNEIEKHTEPGMLKVLLYHGSN 323 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF----VGPHNTHGMAVFNDEASG 202 + ++ + Y +R + HN V DEA Sbjct: 324 RSNSIQELSQYDVILTSYSVLESVYRKQNYGFKRKNGLVKEKSAIHNIEFYRVILDEAHN 383 Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNT--RRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 D + + R W +T R+ + I + L+ + Y + Sbjct: 384 IKDRNSNTSRAAGKLNTKKR-WCLTGTPLQNRIGEMYSLIRYMKLDPFHSYFCTKCDCKS 442 Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQFP 289 D F +G + F Sbjct: 443 EDWKFSDGRRCDLCQHPPMLHTNFFNHFM 471 >gi|213405465|ref|XP_002173504.1| helicase C-terminal domain-containing protein [Schizosaccharomyces japonicus yFS275] gi|212001551|gb|EEB07211.1| helicase C-terminal domain-containing protein [Schizosaccharomyces japonicus yFS275] Length = 794 Score = 39.5 bits (90), Expect = 0.84, Method: Composition-based stats. Identities = 17/123 (13%), Positives = 42/123 (34%), Gaps = 11/123 (8%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 ++ G+GKT + A +M+ + P ++ +A ++ + + E ++ +P Sbjct: 90 NVLVALPTGLGKTFIAAVLMMNYLRWFPQSYVVFLAPTKPLVTQQM--EACYKIAGIPKS 147 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 E+ + + K + +T +T + + D Sbjct: 148 CTAELSGQ-------VPVATRAELYKEKKVFFLTPQTLQNDLKRGICD--RMKISCLVVD 198 Query: 199 EAS 201 EA Sbjct: 199 EAH 201 >gi|66809511|ref|XP_638478.1| hypothetical protein DDB_G0284689 [Dictyostelium discoideum AX4] gi|60467073|gb|EAL65114.1| hypothetical protein DDB_G0284689 [Dictyostelium discoideum AX4] Length = 1679 Score = 39.5 bits (90), Expect = 0.84, Method: Composition-based stats. Identities = 19/150 (12%), Positives = 33/150 (22%), Gaps = 6/150 (4%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAE--VSKWLSML 135 + G GKT A ++L + + I + + + N L + K S+ Sbjct: 1174 VRGPPGTGKTHFLALVVLIFMESFKRKEKPFRIAITSFTHNAIDNLLLRISALKKEYSIS 1233 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 + D K T + + Sbjct: 1234 VGQDINFPLFKKQSSKLTDEFKDNDIKLFDKKDLTNRNHLCVGATSWSLSTLDYNDFDLL 1293 Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWI 225 DEAS I + Sbjct: 1294 IIDEASQLSSFIGSIPFQRLNKETGKIIIC 1323 >gi|68499973|gb|AAY97916.1| putative ATPase [Plasmid pMCBF1] gi|133711725|gb|ABO36545.1| putative ATPase [uncultured bacterium pMCBF6] Length = 319 Score = 39.5 bits (90), Expect = 0.85, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 32/130 (24%), Gaps = 7/130 (5%) Query: 62 VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121 + ++ + + G G GKTTL ++ ++ P + I ++ Sbjct: 133 MTDAQRLSIIRAVEEHRNILVIGGTGSGKTTLVNAIINQMVIQDPTERVFIIEDTGE--- 189 Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 AE + +L + + ++ P Sbjct: 190 IQCAAENHVQYHTSIDVSMTMLLKTTLRMRP----DRILVGEVRGEEALDLLDAWNTGHP 245 Query: 182 DTFVGPHNTH 191 H Sbjct: 246 GGAATLHANS 255 >gi|320582339|gb|EFW96556.1| Nicotinic acid mononucleotide adenylyltransferase [Pichia angusta DL-1] Length = 778 Score = 39.5 bits (90), Expect = 0.85, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 45/158 (28%), Gaps = 9/158 (5%) Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS-IICIANSE 117 ME V ++ C + RG GKTT+ +L L P M +I I+ Sbjct: 39 MEQVQIYKMLENTIKFNEGKSCLVIGPRGSGKTTMVNNALLDLQEKFPNMFYVIRISGFY 98 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177 + E+++ L RH S S+ + Sbjct: 99 QSDDKSAIKEIARQLDWHLLRHSGNWSVSFERFSANETMNSVMSV--------LDGSQLM 150 Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 E + + DE + +++L Sbjct: 151 EGKDQNGDNDEMQMPIIFVIDELDRYTNDAKQTLLYNL 188 >gi|311245447|ref|XP_003121832.1| PREDICTED: Fanconi anemia group M protein-like [Sus scrofa] Length = 2053 Score = 39.5 bits (90), Expect = 0.85, Method: Composition-based stats. Identities = 25/250 (10%), Positives = 68/250 (27%), Gaps = 19/250 (7%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + G+GKT + A +M P ++ +A ++ + ++ ++ Sbjct: 114 CNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQ----QIEACYRVMGI 169 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + E+ + + + P + Sbjct: 170 PQSHMAEMTGSTQVFTRKEIWDSKRVLFLTPQVMVNDLSRGACP-------AAEIKCLVI 222 Query: 198 DEAS-GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256 DEA + ++ + + + S T + I ++ ++ + Sbjct: 223 DEAHRALGNYAYCQVVRELVKYTNHFRILALSATP-GSDIKAVQQVITNLLIEQIELRSE 281 Query: 257 TVEGI---DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 I + + A + Q + ++ I N + M R+ + Sbjct: 282 DAPDILPYSHERRVEKLVVPLSEELAAIQKAYIQILEAFAHSLIQRNVL---MRRDIPNL 338 Query: 314 LYAPLIMGCD 323 +I+ D Sbjct: 339 TKYQIILARD 348 >gi|306843198|ref|ZP_07475811.1| type I site-specific deoxyribonuclease, HsdR family [Brucella sp. BO2] gi|306286608|gb|EFM58181.1| type I site-specific deoxyribonuclease, HsdR family [Brucella sp. BO2] Length = 968 Score = 39.5 bits (90), Expect = 0.85, Method: Composition-based stats. Identities = 22/193 (11%), Positives = 49/193 (25%), Gaps = 24/193 (12%) Query: 33 MRFFPWGIKG-KPLEHFSQP---HRWQ-LEFMEAVDVHCHSNVNNSNPTIFK--CAISAG 85 ++ W +G P + Q F+E + + +SA Sbjct: 142 KHYYQWKEEGENPYGYMLDFHISRLCQKRRFLEIIHDFIVFDSGTKKTCRHNQYFGVSAA 201 Query: 86 R---------------GIGKTTLNAWMMLWLISTRPGMSIICI--ANSETQLKNTLWAEV 128 G GK+ W+ W+ ++ I + +++ V Sbjct: 202 HDHVRDRKSGIIWHTQGSGKSLTMVWLAKWIRENAKDSRVLVITDRTELDEQIEGVFSGV 261 Query: 129 SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188 + + + + + + + + T E + G Sbjct: 262 DEKIYRTKNGEDLIATLNKSTEWLVCSLIHKFGRQGEDEDNQATEDFIKELKASLPAGFA 321 Query: 189 NTHGMAVFNDEAS 201 + VF DE Sbjct: 322 AKGEIFVFVDECH 334 >gi|256086191|ref|XP_002579287.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni] gi|238664711|emb|CAZ35526.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni] Length = 217 Score = 39.5 bits (90), Expect = 0.85, Method: Composition-based stats. Identities = 15/136 (11%), Positives = 32/136 (23%), Gaps = 11/136 (8%) Query: 66 CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMML-WLISTRPGMSIICIANSETQLKNTL 124 + A G GKT + +L + + P + +A + K Sbjct: 44 IQQRAIIPSIEGRNVIAQAQSGTGKTATFSIAILQQICTNDPRCQALVLAPTRELAKQI- 102 Query: 125 WAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF 184 + + ++S H ++ + + + Sbjct: 103 ---------QMVVLALGDYMNISCHVCIGGTQVSTDIEQLQLGQQIVVGTPGRVLDMISR 153 Query: 185 VGPHNTHGMAVFNDEA 200 H DEA Sbjct: 154 GYLHTQTIKCFVLDEA 169 >gi|84494465|ref|ZP_00993584.1| putative cell division-related protein [Janibacter sp. HTCC2649] gi|84383958|gb|EAP99838.1| putative cell division-related protein [Janibacter sp. HTCC2649] Length = 1472 Score = 39.5 bits (90), Expect = 0.85, Method: Composition-based stats. Identities = 22/208 (10%), Positives = 51/208 (24%), Gaps = 13/208 (6%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 ++ G GK+ L ++ L P I + Sbjct: 654 VAGTTGSGKSELLQSLICSLAINNPPSRITFLLVDYKG---------GAAFRECADLPHS 704 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP-DTFVGPHNTHGMAVFNDEA 200 L P+ L+ + ++ + + + + M + DE Sbjct: 705 VGYITDLTPALVQRALVSLHAELTTREHLLERYGAKDLVALERSHPDVAPPAMLICIDEF 764 Query: 201 SGTPDIINKSILGFFT--ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 + + + + G + + + M T+R G + +I + Sbjct: 765 AALTTEVPEFVDGMVSIAQRGRSLGMHMILATQRPAGVVTPQIKANTDLRIALRIASDDD 824 Query: 259 EGIDSGFHEGIISRYGLDSDVARIEILG 286 D A ++ G Sbjct: 825 SH-DVIDAPDAARLSRRTPGRAWVKRTG 851 >gi|294881707|ref|XP_002769457.1| N-acetyltransferase, putative [Perkinsus marinus ATCC 50983] gi|239872916|gb|EER02175.1| N-acetyltransferase, putative [Perkinsus marinus ATCC 50983] Length = 924 Score = 39.5 bits (90), Expect = 0.85, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 61/224 (27%), Gaps = 23/224 (10%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 +++A RG GK+ M + L T+ ++ A S L TL+ V K L + Sbjct: 283 VSLTAARGRGKSASL-GMAIALAITQGYSNVFVTAPSPENL-TTLFEFVLKTFESLGYAE 340 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN---------- 189 + + SG + ++S R + + Sbjct: 341 HQDYSLVQQQQSGSEDYGSDSKARLESGGGGHRGVNTPLVRINVYKTHRQTIQYVSPADS 400 Query: 190 ---THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246 + + DEA+ P + + T G + E Sbjct: 401 KYISQAELLVIDEAAAIP---LPVVKKLLSTGQHITLMSSTVQGYEGTGR-ALSLKLIAE 456 Query: 247 DWKRYQIDTRTVEGIDS----GFHEGIISRYGLDSDVARIEILG 286 K+ + +R + I G + +L Sbjct: 457 LKKQQKGSSRDDPNGKHLTELTLNTPIRYASGDGLEAWLGRLLC 500 >gi|56808102|ref|ZP_00365893.1| COG1203: Predicted helicases [Streptococcus pyogenes M49 591] Length = 673 Score = 39.5 bits (90), Expect = 0.85, Method: Composition-based stats. Identities = 24/194 (12%), Positives = 51/194 (26%), Gaps = 11/194 (5%) Query: 29 KNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME-AVDVHCHSNVNNSNPTIFKCAISAGRG 87 ++F+ + I+ K F QP+ QL + + + I++ + G Sbjct: 105 RSFLKHSYLAAIEQK-YASFGQPNN-QLNTIRTEIAERVKERGKRDSKGIYRLDL--PTG 160 Query: 88 IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147 GKT L+ + I + L+ + + H + + Sbjct: 161 AGKTNLSMRYAFHQLVHHDKSRFFYITPFLSVLEQNAYEIRKVTGDLGVLEHHSNVVKQA 220 Query: 148 LHPSGWYAELLEQSMGIDSKHYTI------TCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 LL + + +T + + + V DE Sbjct: 221 NEDDDDKDSLLSAYLSDSWDSQVVLTSMVQFFQTLFKTKSANLRRFSSLINSVVILDEVQ 280 Query: 202 GTPDIINKSILGFF 215 P + Sbjct: 281 SLPIEVTTLFNLTM 294 >gi|319760404|ref|YP_004124342.1| exodeoxyribonuclease V, alpha subunit [Candidatus Blochmannia vafer str. BVAF] gi|318039118|gb|ADV33668.1| exodeoxyribonuclease V, alpha subunit [Candidatus Blochmannia vafer str. BVAF] Length = 645 Score = 39.5 bits (90), Expect = 0.86, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 28/66 (42%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + IS G G GKT+ A ++ L+ + I IA + ++ +K + Sbjct: 191 RVLISGGPGTGKTSTIAKIITALLLYDHNLRIKMIAPTGKSASILTYSCNNKLNNFNQLN 250 Query: 139 HWFEMQ 144 +F+ + Sbjct: 251 GFFKYK 256 >gi|237651615|ref|YP_002899085.1| N4 gp68-like protein [Roseophage DSS3P2] gi|220898085|gb|ACL81343.1| N4 gp68-like protein [Silicibacter phage DSS3phi2] Length = 538 Score = 39.5 bits (90), Expect = 0.86, Method: Composition-based stats. Identities = 33/297 (11%), Positives = 71/297 (23%), Gaps = 36/297 (12%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 K RG KTTL + ++ + + +++ V Sbjct: 70 KITNLCARGTAKTTLMMEYLTLYLAMFNKIPGFGPVPGMLYISDSMDNGVKSA-RESIKS 128 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC-RTYSEERPDTFVGPHNTHGMAVFN 197 ++ + L E M +++ + + + N + Sbjct: 129 RYYSSEFLQYWLPESGVRFTENYMEFYNRNGGKFGVKMFGAKSGIRGTKIFNRRPVLAVM 188 Query: 198 D----EASGTPDIINKSILGFFTEL------NPNRFWIMTSNTRRLNGWFYDIFNIPL-- 245 D +A ++I I+ Y Sbjct: 189 DDLISDADSKSPTAMEAINDTVYSGVQYALDPTRHKMILNGTPFNKEDIVYQAIESGAWQ 248 Query: 246 -EDWKRYQ--------IDTRTVEGIDSGFHEGIISR--YGLDSDVARIEILGQFPQQEVN 294 W + + + + + R E++ + + + Sbjct: 249 VNVWPVCKEFPCTEEEFSGAWEDRFTYQYVKEMYESAVMEGKEKSFRQELMLR-ITSDES 307 Query: 295 NFIPHNYI--EEAMSREAIDDLYAPLIMGCDIA---GEGGDKTVVVF----RRGNII 342 I + I + M + Y I D A + D TV+ + GN I Sbjct: 308 RLIQQDEIGWKSRMDILSNRKNYNFYITT-DFATSSKQTADYTVISVWAYDKDGNWI 363 >gi|321476533|gb|EFX87493.1| hypothetical protein DAPPUDRAFT_306483 [Daphnia pulex] Length = 805 Score = 39.5 bits (90), Expect = 0.87, Method: Composition-based stats. Identities = 38/328 (11%), Positives = 84/328 (25%), Gaps = 55/328 (16%) Query: 43 KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR--------GIGKTTLN 94 KP+ F+ + + M + +N A+ +GR G GKT Sbjct: 297 KPVCSFAHF-NFDEKLMNVIRKSEFTNPTPIQSQAIPAAL-SGRDVIGIAQTGSGKTAAF 354 Query: 95 AWMMLWLISTRPGMS------IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148 W M+ I +P + + +A + +L ++ E K+ + S Sbjct: 355 LWPMIVHILDQPDLKPGDGPIGLILAPT-RELSQQIYTEAKKFCKVFGISVVCCYGGGSK 413 Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208 EQS ++ + + + DEA D+ Sbjct: 414 W---------EQSKDLEQGAEIVVATPGRMIDLVKIKATNLQRVTFLVLDEADRMFDMGF 464 Query: 209 KSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG 268 + + + + ++ + + Q D D Sbjct: 465 EPQVRSICNHARPERQTLLFSATFKKRIEKLARDVLSDPIRIVQGDVGEA-NQDVTQVIE 523 Query: 269 IISRYGLDSDVARIEILGQFPQQEVNNFI--------------------------PHNYI 302 +I+ S + + +F + + Sbjct: 524 VIAPTAKYSWLITRLV--EFMASGSVLIFVTKKANAEELSASLKSRELSVALLHGDMDQV 581 Query: 303 EEAMSREAIDDLYAPLIMGCDIAGEGGD 330 + + +++ D+A G D Sbjct: 582 DRNQVISSFKKKEMDILVATDVAARGLD 609 >gi|290998710|ref|XP_002681923.1| SNF2 domain-containing protein [Naegleria gruberi] gi|284095549|gb|EFC49179.1| SNF2 domain-containing protein [Naegleria gruberi] Length = 1231 Score = 39.5 bits (90), Expect = 0.87, Method: Composition-based stats. Identities = 23/209 (11%), Positives = 49/209 (23%), Gaps = 14/209 (6%) Query: 87 GIGKTTLNAWMMLWLISTRP---GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 G+GKT M +L + II +++ E K+ L ++ Sbjct: 533 GLGKTIQTIAFMAYLAEKKSIWGPTLIITPSSTLHN----WQQEFEKFCPTLRVLPYWGA 588 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 ++ + + + + DEA Sbjct: 589 LKERKLLRKYWTNPDKLYQKDSP---FHVVVSSYGLILEDEKYFKKVKWQYLILDEAHAI 645 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNT---RRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 + ++T W F +P + + + Sbjct: 646 K-SSKSLRWKTLLSMKCRNRMLLTGTPIQNNMKELWALLHFIMPSIFDSHDEFNDWFSKD 704 Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQFP 289 I+S + ++ IL F Sbjct: 705 IESHATKEQDTKLNEQQLARLHMILKPFM 733 >gi|215414875|emb|CAA21686.2| C. elegans protein Y54E2A.4, partially confirmed by transcript evidence [Caenorhabditis elegans] Length = 2017 Score = 39.5 bits (90), Expect = 0.87, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 39/136 (28%), Gaps = 10/136 (7%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 I A G GKT M L+ PGM ++ IA ++ ++ V W + Sbjct: 1200 IGAPTGSGKTLCAELAMFRLLQDHPGMKVVYIAPLKSLVRER----VDDWKKKFEDGMGY 1255 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + +S + EL S+ T + + + DE Sbjct: 1256 RVVEVSGDVTPDPEELAASSI------LITTPEKWDGISRSWATREYVRRVGLIVLDEVH 1309 Query: 202 GTPDIINKSILGFFTE 217 + + Sbjct: 1310 LLGVDRGAVLEAIVSR 1325 >gi|209559724|ref|YP_002286196.1| ATP-dependent RNA helicase SrmB, putative [Streptococcus pyogenes NZ131] gi|209540925|gb|ACI61501.1| ATP-dependent RNA helicase SrmB, putative [Streptococcus pyogenes NZ131] Length = 800 Score = 39.5 bits (90), Expect = 0.87, Method: Composition-based stats. Identities = 24/194 (12%), Positives = 51/194 (26%), Gaps = 11/194 (5%) Query: 29 KNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME-AVDVHCHSNVNNSNPTIFKCAISAGRG 87 ++F+ + I+ K F QP+ QL + + + I++ + G Sbjct: 232 RSFLKHSYLAAIEQK-YASFGQPNN-QLNTIRTEIAERVKERGKRDSKGIYRLDL--PTG 287 Query: 88 IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147 GKT L+ + I + L+ + + H + + Sbjct: 288 AGKTNLSMRYAFHQLVHHDKSRFFYITPFLSVLEQNAYEIRKVTGDLGVLEHHSNVVKQA 347 Query: 148 LHPSGWYAELLEQSMGIDSKHYTI------TCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 LL + + +T + + + V DE Sbjct: 348 NEDDDDKDSLLSAYLSDSWDSQVVLTSMVQFFQTLFKTKSANLRRFSSLINSVVILDEVQ 407 Query: 202 GTPDIINKSILGFF 215 P + Sbjct: 408 SLPIEVTTLFNLTM 421 >gi|17537519|ref|NP_497062.1| hypothetical protein Y54E2A.6 [Caenorhabditis elegans] Length = 1798 Score = 39.5 bits (90), Expect = 0.87, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 39/136 (28%), Gaps = 10/136 (7%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 I A G GKT M L+ PGM ++ IA ++ ++ V W + Sbjct: 981 IGAPTGSGKTLCAELAMFRLLQDHPGMKVVYIAPLKSLVRER----VDDWKKKFEDGMGY 1036 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + +S + EL S+ T + + + DE Sbjct: 1037 RVVEVSGDVTPDPEELAASSI------LITTPEKWDGISRSWATREYVRRVGLIVLDEVH 1090 Query: 202 GTPDIINKSILGFFTE 217 + + Sbjct: 1091 LLGVDRGAVLEAIVSR 1106 >gi|327400267|ref|YP_004341106.1| hypothetical protein Arcve_0358 [Archaeoglobus veneficus SNP6] gi|327315775|gb|AEA46391.1| protein of unknown function DUF699 ATPase [Archaeoglobus veneficus SNP6] Length = 807 Score = 39.5 bits (90), Expect = 0.88, Method: Composition-based stats. Identities = 33/238 (13%), Positives = 67/238 (28%), Gaps = 43/238 (18%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM------LWLISTRPGM 108 Q+ ++ + I+A RG GKT + + + + RP + Sbjct: 255 QVRVLQLFETFFDREKERKA-----VVITADRGRGKTAVLGIVTPYLISRMHRVLKRP-V 308 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 I+ +A + Q T + + K L +++ + Sbjct: 309 RIMVVAPT-PQAVQTYFRFLKKALVRQGMKNY------------------KVKESNGLIT 349 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP-DIINKSILGFFTELNPNRFWIMT 227 + E + + DEA+G ++ + G +I+ Sbjct: 350 VINSKFARVEYVVPRRAMIEKDYADIIIVDEAAGIDVPVLWQITEGAR--------YIVF 401 Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285 S T F+I + + VE E I G + ++L Sbjct: 402 STTIHGYEGAGRGFSI---RFLKRLEMDEDVEIEKIHLEEPIRYGKGDPIEAWLYDVL 456 >gi|297526845|ref|YP_003668869.1| ABC transporter related protein [Staphylothermus hellenicus DSM 12710] gi|297255761|gb|ADI31970.1| ABC transporter related protein [Staphylothermus hellenicus DSM 12710] Length = 219 Score = 39.5 bits (90), Expect = 0.88, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 51/185 (27%), Gaps = 15/185 (8%) Query: 63 DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL-----ISTRPGMSIICIA-NS 116 H N+ S + G+GKTTL L L G I + + Sbjct: 14 SEHILRNIYLSIEEKENVVVRGRSGVGKTTLAMISALLLKPSSGEIMFVGRKITKLRDHE 73 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM--------GIDSKH 168 + L+ + ++ +LP+ + L L GW + E + + Sbjct: 74 RSMLRLKHIGYIDQYYKLLPNLTVLDNIILPLRLMGWKKQEAENEALNLIKQLGIYNVRD 133 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDE-ASGTPDIINKSILGFFTELNPNRFWIMT 227 + +++ + DE S + I+ N + Sbjct: 134 KYPLQISGGQKQRAAIARALVKKPKLIIADEPFSNLDEETMHQIMMLLKNYVENNHAGIL 193 Query: 228 SNTRR 232 T Sbjct: 194 ITTTD 198 >gi|153002036|ref|YP_001367717.1| ATP-dependent RNA helicase SrmB [Shewanella baltica OS185] gi|217974608|ref|YP_002359359.1| ATP-dependent RNA helicase SrmB [Shewanella baltica OS223] gi|304410566|ref|ZP_07392184.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|307304659|ref|ZP_07584409.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] gi|151366654|gb|ABS09654.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185] gi|217499743|gb|ACK47936.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223] gi|304351050|gb|EFM15450.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183] gi|306912061|gb|EFN42485.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175] Length = 419 Score = 39.5 bits (90), Expect = 0.88, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 47/233 (20%), Gaps = 22/233 (9%) Query: 57 EFMEAVDVH----CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM---- 108 E + A+ H A G GKT L + P Sbjct: 14 ESLNAMGHHSPTTIQQETIPYALEQRDILARAPTGTGKTASFLLPSLQHLIDFPRRFAGQ 73 Query: 109 -SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 I+ + + E++ + H Q L + Q + Sbjct: 74 ARILILTPT---------RELASQIHRYAC-HLATGQGLDIAIVTGGVPYGPQEEALAGN 123 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227 + + + DEA D+ S++ R M Sbjct: 124 VDILVATPGRLMEYLDKGNFNAQEVDILIIDEADRMLDMGFSSVVQAIAIEAQGRKQNML 183 Query: 228 SNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280 + G L D + + I Sbjct: 184 FSATLEGGGVQRFAREVLNDPIEIDV---EAPRSEKAKIHQWIHLADDKEHKF 233 >gi|123454959|ref|XP_001315228.1| Type III restriction enzyme, res subunit family protein [Trichomonas vaginalis G3] gi|121897898|gb|EAY03005.1| Type III restriction enzyme, res subunit family protein [Trichomonas vaginalis G3] Length = 955 Score = 39.5 bits (90), Expect = 0.88, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 52/157 (33%), Gaps = 12/157 (7%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + G+GKT ++A ++L P I+ +A S + + A + L + Sbjct: 28 NTLVVIPTGLGKTFISAMVILNFYRWFPKGKILFLATSRPLVTQQM-AGIRDILQI---- 82 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 +S + +G + + ++ T +T ++ + + V D Sbjct: 83 ----DKSEIIELTGSVEPRIRPQLWNKARVIFATPQTVQKDLEKG--TCPASQIVLVVID 136 Query: 199 EASGTP-DIINKSILGFFTELNPNRFWIMTSNTRRLN 234 EA D ++ E I S T + Sbjct: 137 EAHHATGDHSYCKVVSGIAEYTKFFRVIGLSATPGSD 173 >gi|323512317|gb|ADX87773.1| hypothetical protein TU12-16_00095 [Vibrio phage ICP2_2006_A] Length = 508 Score = 39.5 bits (90), Expect = 0.88, Method: Composition-based stats. Identities = 26/220 (11%), Positives = 53/220 (24%), Gaps = 23/220 (10%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSET----QLKNTLWAEVSKWLSMLPHRHW 140 RG K+ + A W ++ P +I+ I+ + QL + SK Sbjct: 51 PRGHLKSHMMALWAAWWVTKHPETTILYISATSELAEMQLYDIKNIMTSKIYRRYWPDMI 110 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 E + W + + G H V + Sbjct: 111 HEEEGKREK---WTNSAIAVDHPKRKMEGVRDFTIKTAGLTTNTTGWHAD----VIISDD 163 Query: 201 SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGW-----FYDIFNIPLEDWKRYQIDT 255 PD TE + S + P + + ++ Sbjct: 164 VVVPDNAY-------TEDGRRKVAAAMSQMESILNADGIVKACGTRYHPADIYDTWKNQH 216 Query: 256 RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN 295 + V + + V + + +P+ + Sbjct: 217 QPVFDEHGEETGEERPVWDIFERVVEEDGVFLWPRTSRGS 256 >gi|331218680|ref|XP_003322017.1| helicase SWR1 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309301007|gb|EFP77598.1| helicase SWR1 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1764 Score = 39.5 bits (90), Expect = 0.88, Method: Composition-based stats. Identities = 25/236 (10%), Positives = 60/236 (25%), Gaps = 26/236 (11%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GMS 109 +QL+ + + +N G+GKT + +M +L Sbjct: 846 EYQLKGLNWLANLYEQGINGILADEM--------GLGKTVQSISLMAYLAEVHNIWGPFL 897 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 +I A++ E+++++ L ++ + + + D Sbjct: 898 VIAPASTLHN----WQQEITRFVPALKPIPYWGSVKDRTILRKF---WNRKHLRYDRDAP 950 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 T + + DEA + + ++T Sbjct: 951 FHVVITSYQLVVQDEKYFQTLKWQYMILDEAQAIKSSS-STRWKTLLGFHCRNRLLLTGT 1009 Query: 230 TRRLNG---WFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI 282 + + W F +P + E + G++ R Sbjct: 1010 PIQNSMTELWALLHFIMPQ----LFDSHEEFSEWFSKDIENSVDKAGGMNEHQLRR 1061 >gi|285804114|gb|ADC35596.1| polyprotein [Dengue virus 3] Length = 3390 Score = 39.5 bits (90), Expect = 0.88, Method: Composition-based stats. Identities = 26/185 (14%), Positives = 52/185 (28%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATK- 1722 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 +E + + +H T T R S + + DEA D Sbjct: 1723 --------SEHTGREIVDLMRHATFTMRLLS--------PVRVPNYNLIIMDEAHF-TDP 1765 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 1766 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 1822 Query: 264 GFHEG 268 + Sbjct: 1823 EWITD 1827 >gi|284037966|ref|YP_003387896.1| type I site-specific deoxyribonuclease [Spirosoma linguale DSM 74] gi|283817259|gb|ADB39097.1| Type I site-specific deoxyribonuclease [Spirosoma linguale DSM 74] Length = 813 Score = 39.5 bits (90), Expect = 0.88, Method: Composition-based stats. Identities = 34/332 (10%), Positives = 80/332 (24%), Gaps = 36/332 (10%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 QP +Q + N + + G GKT M+ L + Sbjct: 160 GSGRQPRYYQQIAINRTVEAIAKGQN-------RVLLVMATGTGKTYTAFQMIYRLWKSG 212 Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSML-PHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 I+ +A+ + T + + + R + + Sbjct: 213 RKKRILFLADRNALIDQTRRGDFKYFRDKMTIIRKRVVNVGGKEELVSTRRRGISATDKA 272 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA---SGTPDIINKSILGFFTELNPN 221 + E D + + DE S + D + IL + Sbjct: 273 YEIFLGLYQGLTGNEGIDAYKDFSPDFFDLIVVDECHRGSASDDSSWRVIL----DYFKG 328 Query: 222 RFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGI---ISRYGLDSD 278 + + T R + + + I + G Sbjct: 329 ATQVGLTATPRETNTVSNSEYFGDPLYTYSLKQGIDDGFLAPYRVVRIGLNVDLEGWRPP 388 Query: 279 VARIEILGQFPQQEVNNFIPHNYIEEAMSREA-------IDDLY--------APLIMGCD 323 + + G + + + + E Y ++ D Sbjct: 389 KGKRDKKGNPV---EDRIYNRSDFDRNIVVEDRRRLVAEKITEYLKGQNRFMKTIVFCVD 445 Query: 324 IAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQE 355 I G + +V + ++++ + + K+ + Sbjct: 446 IEHADGMRNALVKQNADLVKQNYKYVMKITGD 477 >gi|212715327|ref|ZP_03323455.1| hypothetical protein BIFCAT_00221 [Bifidobacterium catenulatum DSM 16992] gi|212661784|gb|EEB22359.1| hypothetical protein BIFCAT_00221 [Bifidobacterium catenulatum DSM 16992] Length = 481 Score = 39.5 bits (90), Expect = 0.88, Method: Composition-based stats. Identities = 36/314 (11%), Positives = 68/314 (21%), Gaps = 53/314 (16%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ + T +S R GK+TL + P I Sbjct: 34 PWQRLVADVAGEIDPDTGTYFYDT---VILSTPRQCGKSTLVDAVDTRNSQWGPDRFIYY 90 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 +A + + K+L L + + +G + I K T Sbjct: 91 LAQTGKDAGD----HFKKYLKTLGSSPLAAITTRPYLGAGDLRQPFANGSVIMPKSVTKV 146 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL----GFFTEL------NPNR 222 H G + DEA + +IL P Sbjct: 147 AG-------------HGVQGDKITLDEAFSLSEETGNTILDGFMPTMATRLKATGVQPQL 193 Query: 223 FWIMTSNT------RRLNGWFYDIFNIPLEDWKRYQIDTRTVEG---------------I 261 + T T R W + + Sbjct: 194 WITSTEGTAESTFFNRRLDACRAGEQSRRTCWFDFGLPADEDPENLDSIMRHHPAAGLLW 253 Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD--LYAPLI 319 + ++ + + + + I ++ P++ Sbjct: 254 NKTQLADFREQFQGNPAGWARAFGNRRDEGITDRAIDEALWAATVTAPVTPGDLDGRPVV 313 Query: 320 MGCDIAGEGGDKTV 333 G + +G +V Sbjct: 314 FGVAVDVDGTHTSV 327 >gi|255084417|ref|XP_002508783.1| predicted protein [Micromonas sp. RCC299] gi|226524060|gb|ACO70041.1| predicted protein [Micromonas sp. RCC299] Length = 943 Score = 39.5 bits (90), Expect = 0.89, Method: Composition-based stats. Identities = 19/135 (14%), Positives = 45/135 (33%), Gaps = 10/135 (7%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 A++A RG GK+ + + +I + S LK + + K + ++ Sbjct: 276 VALTAARGRGKSA-AMGIAVAGAVAMGYANIFVTSPSPENLKT-FFQFILKGFDAMEYKE 333 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + ++ ++ + ER + + DE Sbjct: 334 HLDYDIVESSNPAFGKAIVRINVHRAHRQTIQYILPQHAERASSAE--------LLVIDE 385 Query: 200 ASGTPDIINKSILGF 214 A+ P +++LG Sbjct: 386 AAAIPLPTVQALLGP 400 >gi|239616472|ref|YP_002939794.1| Type III site-specific deoxyribonuclease [Kosmotoga olearia TBF 19.5.1] gi|239505303|gb|ACR78790.1| Type III site-specific deoxyribonuclease [Kosmotoga olearia TBF 19.5.1] Length = 875 Score = 39.5 bits (90), Expect = 0.89, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 56/194 (28%), Gaps = 22/194 (11%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q+E + + N N PT ++ G GKT L A +L + + + + Sbjct: 39 RPYQIEAIARFIHYLEENPNRKRPTQLLFNMATG--SGKTLLMAANIL-YLYNKGYRNFL 95 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 NS N + +L++L ++ F + E+ + I Sbjct: 96 FFVNST----NIIEKTRDNFLNLLSPKYLFNQRIKFEDKEVVIREVSNFDEANEEDINII 151 Query: 172 TCRTYSEERPDTFVGPHN-------THGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224 ++ + + +DEA TE W Sbjct: 152 FTTIQGLHSQLNLFRENSITFEDLKDKKIVLISDEAHHI--NAWTRNRLSKTEEMKKTSW 209 Query: 225 ------IMTSNTRR 232 I+ SN Sbjct: 210 EYTVMQILNSNPEN 223 >gi|169795370|ref|YP_001713163.1| putative Phage replication protein [Acinetobacter baumannii AYE] gi|169148297|emb|CAM86162.1| conserved hypothetical protein; putative Phage replication protein [Acinetobacter baumannii AYE] Length = 247 Score = 39.5 bits (90), Expect = 0.89, Method: Composition-based stats. Identities = 17/136 (12%), Positives = 32/136 (23%), Gaps = 3/136 (2%) Query: 29 KNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGI 88 K+F P K +++ P Q + V + + G Sbjct: 61 KHFAGAMLPERHKNAGFRNYNTPLSGQKNALTQTANFAKKIVK---GEVENLVMVGSTGT 117 Query: 89 GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148 GKT L L++ I ++ + + L L Sbjct: 118 GKTHLACATARTLLAKGNYARYITSEELAQRIMKAWDKDTKDQSEQSVIHEFTTYDLLIL 177 Query: 149 HPSGWYAELLEQSMGI 164 G + + Sbjct: 178 DEYGLHDRDKRLELIH 193 >gi|304413632|ref|ZP_07395076.1| DNA-dependent ATPase I and helicase II [Candidatus Regiella insecticola LSR1] gi|304283723|gb|EFL92117.1| DNA-dependent ATPase I and helicase II [Candidatus Regiella insecticola LSR1] Length = 715 Score = 39.5 bits (90), Expect = 0.90, Method: Composition-based stats. Identities = 43/288 (14%), Positives = 81/288 (28%), Gaps = 28/288 (9%) Query: 59 MEAVDVHCHSNVNNSNPTIFK-CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 M + + + T +K + AG G GK+ + + WL+S IA + Sbjct: 1 MSNLLDGLNEKQREAVATRYKHLLVLAGAGSGKSRVLVHRIAWLLSQEDISPFSIIAVTF 60 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177 T N AE+ + L H + + H+ Sbjct: 61 T---NKSAAEMRHRIENLGRAHNGMWVGTFHGLA----------HRLLRIHHLAANLPQD 107 Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 + D+ + D + + + + Sbjct: 108 FQVLDSDDQLRFVKRIIKSLD----LDEKKWSPRQAISYINGKKDMMLR---PENIENYG 160 Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297 + NI L ++ Y +D L++ +F V+ F Sbjct: 161 NPVENIWLRIYQAYHDACHRTGSVDFAELLLRAHELWLNNPCILQHYRQRFSHILVDEFQ 220 Query: 298 PHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHI 345 N I+ A D +I+G D D++ + RG +E+I Sbjct: 221 DTNKIQYAWIHLLAGDQATVMIVGDD------DQS-IYGWRGAQVENI 261 >gi|311234325|gb|ADP87179.1| terminase GpA [Desulfovibrio vulgaris RCH1] Length = 659 Score = 39.5 bits (90), Expect = 0.90, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 42/144 (29%), Gaps = 7/144 (4%) Query: 35 FFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN 94 W + + +P RW+ E C S P I I GKT L Sbjct: 55 VTEWCERHFRIIGGQRPGRWRREVFPY---TCTIMDAYSLPFIRVIGICGPPQTGKTALE 111 Query: 95 AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWY 154 + W I PG ++ + + + + + + +L E L Sbjct: 112 LGCLAWAIDRDPGP-VLMVLDQQDTAREMA---KDRVIPLLKASPPLEQYITGLADDETA 167 Query: 155 AELLEQSMGIDSKHYTITCRTYSE 178 + + M I R ++ Sbjct: 168 KSINLRHMTIHFGWAGSVSRLANK 191 >gi|241203596|ref|YP_002974692.1| hypothetical protein Rleg_0854 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857486|gb|ACS55153.1| hypothetical protein Rleg_0854 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 229 Score = 39.5 bits (90), Expect = 0.90, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 36/141 (25%), Gaps = 16/141 (11%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 + R +G TT ML + IA++ ++ ++ LP Sbjct: 55 VLLKARQLGLTTFIQIFMLDACVFNRDIRAGTIAHTLGDVQAIFRDKIKYPYDNLPDG-- 112 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + + + + + + + T H + + Sbjct: 113 -------IRNAVPVVRANQTELLLGNNSSIRVGTSLR---SGTLQYLHISEYGKL----C 158 Query: 201 SGTPDIINKSILGFFTELNPN 221 + PD + G + Sbjct: 159 AKYPDKAREVRTGALNKAGEE 179 >gi|167538304|ref|XP_001750817.1| hypothetical protein [Monosiga brevicollis MX1] gi|163770734|gb|EDQ84416.1| predicted protein [Monosiga brevicollis MX1] Length = 1041 Score = 39.5 bits (90), Expect = 0.90, Method: Composition-based stats. Identities = 26/240 (10%), Positives = 54/240 (22%), Gaps = 29/240 (12%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 F+ P Q + + + +A G GKT +L I R Sbjct: 310 GFTAPTPIQ-----------QAAIVPAVRDYRDVIAAAPTGSGKTLAFGLPVLQHILNRR 358 Query: 107 -------GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159 G+ + + + ++ + L L + ++ + E L Sbjct: 359 ARGRSTAGLQCLILTPTRELALQQSLWQIQQHLKPLATPLSVRVTAIVGGMALVKQERL- 417 Query: 160 QSMGIDSKHYTIT-CRTYSEERPDTFVGPHNTHGMAVFNDEAS-GTPDIINKSILGFFTE 217 + + T R + + H + DEA + Sbjct: 418 --LKAKPEIVVGTPGRLWEIIQSGHVHFAHLDSLRFLVLDEADRMVERGHFAELDKILA- 474 Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277 P + + + D + + V S Sbjct: 475 RLPRPTQPAF--PTEEDAYLQRVRENARRDG---TPNVQEVPSNVEEPSATQSDGRKRSS 529 >gi|328882738|emb|CCA55977.1| DNA or RNA helicases of superfamily II [Streptomyces venezuelae ATCC 10712] Length = 597 Score = 39.5 bits (90), Expect = 0.91, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 47/200 (23%), Gaps = 41/200 (20%) Query: 37 PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96 PWG GK WQ ME + + A++ G GKTT Sbjct: 20 PWGTAGKL-------RAWQQGAMEK---YIQEQPRDF------LAVATP-GAGKTTFALT 62 Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156 + WL+ I +A +E + W + Sbjct: 63 LASWLLHHHVVQQITVVAPTEH-----------------LKKQWAAAAARIGIKLDPDYS 105 Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA--SGTPDIINKSILGF 214 S D T V DE +G ++ L Sbjct: 106 AGPLSKEYDGVAITYAGVGVRPMLHRNRSEQR---KTLVILDEIHHAGDSKSWGEACLEA 162 Query: 215 FTELNPNRFWIMTSNTRRLN 234 F +T R + Sbjct: 163 FEPATRRL--ALTGTPFRSD 180 >gi|317178970|dbj|BAJ56758.1| Type IIG restriction-modification enzyme [Helicobacter pylori F30] Length = 1611 Score = 39.5 bits (90), Expect = 0.91, Method: Composition-based stats. Identities = 34/282 (12%), Positives = 74/282 (26%), Gaps = 33/282 (11%) Query: 29 KNFVMRFFPWGIKG-------KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81 ++F+ W PL +P Q+E ++A + + N Sbjct: 144 EDFIYSQIDWEKFDPTQTQGEIPLCDKKKPRPHQIEAIKATKEYFSNPKNTRGK-----L 198 Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 I A G GKT + L ++ + +A S L + E + Sbjct: 199 IMAC-GTGKTYTS----LKIMEALEPKITLFLAPSIALLSQ-TFRE--YAQEKSDPFYAS 250 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + S G + + + I+ + T E+ + + Sbjct: 251 IVCSDDKVGKGKKNKNDDDTDDINFSELPLKPSTRPEDILSVCELVQKENKRFIIFSTYQ 310 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI 261 I ++ R G Y +D + + I Sbjct: 311 S-----ALRIKEAQEVGLGEIDLVICDEAHRTVGAMYSSNE--RDDKNAFTLCHSD-GNI 362 Query: 262 DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303 + + + + S+ ++ ++ N + E Sbjct: 363 KAKKRLYMTATPKVYSESSKAR-----AKESDNAIYSMDDAE 399 >gi|307298971|ref|ZP_07578773.1| chromosomal replication initiator protein DnaA [Thermotogales bacterium mesG1.Ag.4.2] gi|306915396|gb|EFN45781.1| chromosomal replication initiator protein DnaA [Thermotogales bacterium mesG1.Ag.4.2] Length = 447 Score = 39.5 bits (90), Expect = 0.91, Method: Composition-based stats. Identities = 18/139 (12%), Positives = 40/139 (28%), Gaps = 10/139 (7%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 + + V + N NP + G G+GKT L + +S P ++ I S Sbjct: 120 KALYEVALDVTQNPGKYNPFF----VYGGVGLGKTHLLQAIAQETMSNFPDKKVLYI-TS 174 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHW-----FEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 E + + + + + + + + + + Sbjct: 175 EQFMNDMIQSIKENNIQKFRDHYRKKSDILLIDDIQFLIGKKGVQNEFFHSFNELHDSGK 234 Query: 172 TCRTYSEERPDTFVGPHNT 190 S+ P+ H+ Sbjct: 235 QLIICSDRNPEELETFHSR 253 >gi|156399977|ref|XP_001638777.1| predicted protein [Nematostella vectensis] gi|156225900|gb|EDO46714.1| predicted protein [Nematostella vectensis] Length = 2187 Score = 39.5 bits (90), Expect = 0.91, Method: Composition-based stats. Identities = 23/175 (13%), Positives = 43/175 (24%), Gaps = 21/175 (12%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L F+ + Q + V H + A G GKT + + L Sbjct: 1326 LYKFTHFNPVQTQVFHTVYNSDH-----------NVLLGAPTGSGKTIIAELAIFRLFDK 1374 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 PG + IA + ++ + ++ L R E+ S ++ Sbjct: 1375 YPGAKAVYIAPLKALVRERMDDWKVRFGRKLGKRV-IELTGDVTPDSRSISQADLIVTTP 1433 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219 + + DE D + + N Sbjct: 1434 EKWDGISRSWQTRSYV---------KQVNLLIIDEIHLLGDERGPVLEVIVSRTN 1479 >gi|331271055|ref|YP_004385766.1| hypothetical protein CbC4_4191 [Clostridium botulinum BKT015925] gi|329127447|gb|AEB77391.1| hypothetical protein CbC4_4191 [Clostridium botulinum BKT015925] Length = 329 Score = 39.5 bits (90), Expect = 0.91, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 28/98 (28%), Gaps = 12/98 (12%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISA---------GRGIGKTTLNAWMMLWLIS 103 +W + + + + RG GKT L + Sbjct: 55 KWFPDLWYDMLKPEKGGMRLDLDQRVFLRCMSRFISTYGVFPRGFGKTMLELMSIYHTCV 114 Query: 104 TRPGMSIICIANSETQLKNTL---WAEVSKWLSMLPHR 138 P ++I A S+ + E+ KW +L + Sbjct: 115 FFPDITIAMSAQSKENASSISEEKHKEILKWFPLLKNE 152 >gi|317405963|gb|EFV86241.1| type III restriction enzyme [Achromobacter xylosoxidans C54] Length = 976 Score = 39.5 bits (90), Expect = 0.91, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 57/186 (30%), Gaps = 16/186 (8%) Query: 49 SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108 S QL + +V H +S G GKT + + +L+ + Sbjct: 22 SGFRPGQLGALHSVAAHFSVYDEP-------AIVSLPTGYGKTAVI-MALPFLLGSN--- 70 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 ++ + ++ + T LS L ++ + H L + + Sbjct: 71 RVLVVEPTDVLRRQTSAH--FGELSTLRKLKVLPAEAGNPHVHPQKGRPLSADEWLAFRT 128 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 + + T + P + DEA P + LG + +F +T+ Sbjct: 129 FDVVVSTPASTSPVLEPVSPADLFDLIIFDEAHHAPADTWSAYLG---HYSRAKFVFLTA 185 Query: 229 NTRRLN 234 R + Sbjct: 186 TPFRRD 191 >gi|260550544|ref|ZP_05824754.1| exonuclease V alpha subunit [Acinetobacter sp. RUH2624] gi|260406459|gb|EEW99941.1| exonuclease V alpha subunit [Acinetobacter sp. RUH2624] Length = 583 Score = 39.5 bits (90), Expect = 0.91, Method: Composition-based stats. Identities = 20/149 (13%), Positives = 37/149 (24%), Gaps = 16/149 (10%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 E ++ + I+ G G GKT A ++ L P + + A Sbjct: 118 EEHLDLLTDPHQQAALQMVTRQSLSIITGGPGTGKTYTLARIIAVLSQAIPHIRVAMAAP 177 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 + + +Q+ P + L+ + S Sbjct: 178 TGKAAQRM----------------QEALQNSFNDPKLLESGLISDELRNQSTQTIHRLLG 221 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + F + DEAS Sbjct: 222 MGHSQTPRFNQKQPLPYDVIVVDEASMLD 250 >gi|195546688|ref|YP_002117769.1| putative DNA maturase B [Pseudomonas phage PT5] gi|158187649|gb|ABW23126.1| putative DNA maturase B [Pseudomonas phage PT5] Length = 601 Score = 39.5 bits (90), Expect = 0.91, Method: Composition-based stats. Identities = 31/260 (11%), Positives = 70/260 (26%), Gaps = 28/260 (10%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + + N K ++A RG K+T+ ++W I+ P + ++ S + Sbjct: 41 DIADFMQDSPN-------KAMVAAQRGEAKSTIACIYVVWCITQNPATRAMLVSGSGDKA 93 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLS-LHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 + L + L+ L P + + + ++ S Sbjct: 94 EEN---------GQLITKLIMHWDLLAYLRPEARMGDRTSATSFDVNWALKGVEKSASIN 144 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT-------SNTRR 232 + D+ T + + + T + I T + Sbjct: 145 CIGITAALQGYRADILIPDDIETTKNGLTATERAKLTRQSQEFTSICTHGKILYLGTPQS 204 Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292 + +P + R +D G + + +AR+E G P+ Sbjct: 205 RESIYN---GLPARGFLMRIWPGRF-PTLDEQERYGDWLAPSILARIARLEERGHNPRTG 260 Query: 293 VNNFIPHNYIEEAMSREAID 312 + + D Sbjct: 261 KGLDGTRGWAADPQRYNEED 280 >gi|195480025|ref|XP_002101109.1| GE17433 [Drosophila yakuba] gi|194188633|gb|EDX02217.1| GE17433 [Drosophila yakuba] Length = 1008 Score = 39.5 bits (90), Expect = 0.91, Method: Composition-based stats. Identities = 26/207 (12%), Positives = 58/207 (28%), Gaps = 22/207 (10%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 +++A RG GK+ + + +++ + L L+ V K L ++ Sbjct: 275 MSLTAARGRGKSAAL-GLSIAAAVAFGYVNVYVTSPHPENLIT-LFEFVLKGFDALEYQE 332 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + + ++ ++ S+ + + DE Sbjct: 333 HADYTIIRSTNADYKKAIIRINITRSSRQTIQYIAPSDTHLLNAAD--------LLLIDE 384 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 A+ P L ++ M S Y+ L Q+ Sbjct: 385 AAAIP-------LPLVKKMIGPYLVFMASTING-----YEGTGRSLSLKLISQLQKDNNA 432 Query: 260 GIDSGFHEGIISRYGLDSDVARIEILG 286 E I + D + I +L Sbjct: 433 RPPLKLEESIRYQENDDIEKWLINLLC 459 >gi|195355164|ref|XP_002044063.1| GM21106 [Drosophila sechellia] gi|194129316|gb|EDW51359.1| GM21106 [Drosophila sechellia] Length = 861 Score = 39.5 bits (90), Expect = 0.91, Method: Composition-based stats. Identities = 26/207 (12%), Positives = 58/207 (28%), Gaps = 22/207 (10%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 +++A RG GK+ + + +++ + L L+ V K L ++ Sbjct: 275 MSLTAARGRGKSAAL-GLSIAAAVAFGYVNVYVTSPHPENLIT-LFEFVLKGFDALEYQE 332 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + + ++ ++ S+ + + DE Sbjct: 333 HADYTIIRSTNADYKKAIIRINITRSSRQTIQYIAPSDTHLLNAAD--------LLLIDE 384 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 A+ P L ++ M S Y+ L Q+ Sbjct: 385 AAAIP-------LPLVKKMIGPYLVFMASTING-----YEGTGRSLSLKLISQLQKDNNA 432 Query: 260 GIDSGFHEGIISRYGLDSDVARIEILG 286 E I + D + I +L Sbjct: 433 RPPLKLEESIRYQENDDIEKWLINLLC 459 >gi|194890908|ref|XP_001977405.1| GG19025 [Drosophila erecta] gi|190649054|gb|EDV46332.1| GG19025 [Drosophila erecta] Length = 1210 Score = 39.5 bits (90), Expect = 0.91, Method: Composition-based stats. Identities = 26/207 (12%), Positives = 58/207 (28%), Gaps = 22/207 (10%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 +++A RG GK+ + + +++ + L L+ V K L ++ Sbjct: 477 MSLTAARGRGKSAAL-GLSIAAAVAFGYVNVYVTSPHPENLIT-LFEFVLKGFDALEYQE 534 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + + ++ ++ S+ + + DE Sbjct: 535 HADYTIIRSTNADYKKAIIRINITRSSRQTIQYIAPSDTHLLNAAD--------LLLIDE 586 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 A+ P L ++ M S Y+ L Q+ Sbjct: 587 AAAIP-------LPLVKKMIGPYLVFMASTING-----YEGTGRSLSLKLISQLQKDNNA 634 Query: 260 GIDSGFHEGIISRYGLDSDVARIEILG 286 E I + D + I +L Sbjct: 635 RPPLKLEESIRYQENDDIEKWLINLLC 661 >gi|190345830|gb|EDK37782.2| hypothetical protein PGUG_01880 [Meyerozyma guilliermondii ATCC 6260] Length = 952 Score = 39.5 bits (90), Expect = 0.91, Method: Composition-based stats. Identities = 22/222 (9%), Positives = 53/222 (23%), Gaps = 25/222 (11%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 +QL+ + + +N G+GKT + + +L ++ + Sbjct: 170 EYQLKGLNWLANLYDQGINGILADEM--------GLGKT-VQSISVLAYLAEHHNIWGPF 220 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 + + + E+++++ ++ + +S+ Sbjct: 221 FVVTPSSTLHNWQQEIARFVPEFKVLPYWGNAKDRKILRKF---WDRKSLRYGKDAPFHV 277 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232 T + + DEA S + ++T Sbjct: 278 LVTSYQLVVADAAYFQKMKWQYMILDEAQAIKSSQ-SSRWKTLLSFSCRNRLLLTGTP-- 334 Query: 233 LNGWFYDIFNIPLEDW---KRYQIDTRTVEGIDSGFHEGIIS 271 I N E W S + I Sbjct: 335 -------IQNSMQELWALLHFIMPSLFDSHDEFSEWFSKDIE 369 >gi|159153044|gb|ABW93030.1| lethal (1) G0020 [Drosophila simulans] Length = 244 Score = 39.5 bits (90), Expect = 0.91, Method: Composition-based stats. Identities = 26/207 (12%), Positives = 58/207 (28%), Gaps = 22/207 (10%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 +++A RG GK+ + + +++ + L L+ V K L ++ Sbjct: 18 MSLTAARGRGKSAAL-GLSIAAAVAFGYVNVYVTSPHPENLIT-LFEFVLKGFDALEYQE 75 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + + ++ ++ S+ + + DE Sbjct: 76 HADYTIIRSTNADYKKAIIRINITRSSRQTIQYIAPSDTHLLNAAD--------LLLIDE 127 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 A+ P L ++ M S Y+ L Q+ Sbjct: 128 AAAIP-------LPLVKKMIGPYLVFMASTING-----YEGTGRSLSLKLISQLQKDNNA 175 Query: 260 GIDSGFHEGIISRYGLDSDVARIEILG 286 E I + D + I +L Sbjct: 176 RPPLKLEESIRYQENDDIEKWLINLLC 202 >gi|150399457|ref|YP_001323224.1| Hef nuclease [Methanococcus vannielii SB] gi|150012160|gb|ABR54612.1| ERCC4 domain protein [Methanococcus vannielii SB] Length = 776 Score = 39.5 bits (90), Expect = 0.91, Method: Composition-based stats. Identities = 21/144 (14%), Positives = 45/144 (31%), Gaps = 12/144 (8%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 G G+GKT + A + + I ++ ++ IA S + + Sbjct: 36 GTGLGKTAIAA-LTIAGILSKRNGKVLIIAPS---------RPLVDQHQKSMNSFLNIDP 85 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + +G + L + M K + T + + + DEA T Sbjct: 86 EKIIVLNGKISPLKREEMWKTGKIFIATPQVAENDIISG--ILKTKDFSLLIADEAHHTT 143 Query: 205 DIINKSILGFFTELNPNRFWIMTS 228 + + + + N + + S Sbjct: 144 GNHSYTFVANTFKQNSHILGLTAS 167 >gi|150020730|ref|YP_001306084.1| DEAD/DEAH box helicase domain-containing protein [Thermosipho melanesiensis BI429] gi|149793251|gb|ABR30699.1| DEAD/DEAH box helicase domain protein [Thermosipho melanesiensis BI429] Length = 514 Score = 39.5 bits (90), Expect = 0.92, Method: Composition-based stats. Identities = 33/304 (10%), Positives = 77/304 (25%), Gaps = 39/304 (12%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 + E + + A G GKT ++ L+ ++ + I + Sbjct: 18 EKGFEKPTPVQKRVIPILLNKEKNLIVQAKTGTGKTAAFGIPLIELLESKGYVQAIILTP 77 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 + E++ L + P + Q + + Sbjct: 78 TRELALQVS-EEINSLKRK----------RLKILPVYGGQSISRQIEHLKRGVDIVVGTP 126 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNRFWIMTSN--TRR 232 + DEA + + + ++M S RR Sbjct: 127 GRILDHLERKTIDLSKVEYFILDEADEMLDMGFIDDVEKILKSTSDEKIFLMFSATIPRR 186 Query: 233 LNGWF------YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA-----R 281 + Y++ I + + +E ++ E + ++ D R Sbjct: 187 IIDLAKKYIKNYEVIKIADKQLTTNLTEQIYIELNENDKFEALCRIIDVEDDFYGMVFCR 246 Query: 282 IEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL-----------IMGCDIAGEGGD 330 ++ I Y EA+ + + ++ D+A G D Sbjct: 247 TKVEVDNVSS---KLIERGYDAEALHGDFSQYQRERVLKKFKEKRINILVATDVAARGID 303 Query: 331 KTVV 334 + + Sbjct: 304 ISGL 307 >gi|295090111|emb|CBK76218.1| CRISPR-associated helicase, Cas3 family [Clostridium cf. saccharolyticum K10] Length = 758 Score = 39.5 bits (90), Expect = 0.93, Method: Composition-based stats. Identities = 18/211 (8%), Positives = 56/211 (26%), Gaps = 15/211 (7%) Query: 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN--TLWAEVSKWLSM 134 +F+ + G GKT + L + +I + + ++ +++++ ++ Sbjct: 244 LFRLTV--PTGGGKTISSLAFALRHGAEHEMKRVIYVIPYTSIIEQNAKIFSDILGRENV 301 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMA 194 L + +S + + + + HN Sbjct: 302 LEDHCNIDYESDEE-LKPLHLAAENWDKPVVVTTNVQFFESLFSIKSSKCRKLHNIADSV 360 Query: 195 VFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNTR-----RLNGWFYDIFNIPL 245 + DEA P ++ + R + + ++ Sbjct: 361 IIFDEAQMLPCEYLRPCIAAMEELLLRYRSTLVLCTATQPALGGLFRKSITWEELCPDRE 420 Query: 246 EDWKRY-QIDTRTVEGIDSGFHEGIISRYGL 275 E ++ + + + I + + Sbjct: 421 EQFQFFKRCQILNLGRIRREELIDRLEQEDQ 451 >gi|169608259|ref|XP_001797549.1| hypothetical protein SNOG_07199 [Phaeosphaeria nodorum SN15] gi|160701604|gb|EAT85850.2| hypothetical protein SNOG_07199 [Phaeosphaeria nodorum SN15] Length = 1484 Score = 39.5 bits (90), Expect = 0.93, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 57/227 (25%), Gaps = 17/227 (7%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTT A ++ G S++ + + T + N L S + +L ++ Sbjct: 1029 GTGKTTTIAHII--RTLVAKGKSVLLTSYTHTAVDNILLKIKSDKIGILRLGASAKIHPD 1086 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + A + S+ K + + + DEAS Sbjct: 1087 -VREFATLAAEPKDSLEALEKSWMEPPVVATTCLTINHPLFNRRIFDYCIVDEASQIT-- 1143 Query: 207 INKSILGFFTELNPNRFWIMTSN-TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265 LG + D +++ Sbjct: 1144 -LPVCLGPIRMSRKFILVGDHYQLPPLVQN---KEAMEGGLDVSLFKMLCEAHPQAVVSL 1199 Query: 266 HEGIISRYG----LDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR 308 ++ + + F + I + +++ SR Sbjct: 1200 EHQYRMCADIMLLSNTFIYSGRLKCVFINTD---LISQSLEDQSGSR 1243 >gi|16273110|ref|NP_439344.1| DNA-dependent helicase II [Haemophilus influenzae Rd KW20] gi|1174922|sp|Q02322|UVRD_HAEIN RecName: Full=DNA helicase II gi|1574115|gb|AAC22841.1| DNA helicase II (uvrD) [Haemophilus influenzae Rd KW20] Length = 727 Score = 39.5 bits (90), Expect = 0.93, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 81/302 (26%), Gaps = 29/302 (9%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIA 114 E ++ ++ V + AG G GKT + + WLI+ SI+ + Sbjct: 6 ELLDGLNDKQRERVAAPLGNH---LVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 62 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 + S H+ + + +G+ + Sbjct: 63 FTNKAAAEMRHRIQSTLAKHAQHQLFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSE 122 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 + HN DE + P + + + Sbjct: 123 -DQLRLIKRLLKLHN-------FDEKAF-PPKQACWYINNKKDEGLR--------PNDIE 165 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294 + ++ ++ YQ +D + + +F V+ Sbjct: 166 DFNDRQEREWIKIYQIYQDTCDRAGLVDFAELLIRVYELFEKKPLILQRYQQRFQHILVD 225 Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354 F N I+ + + +++ D D++ + RG IE+I + Sbjct: 226 EFQDTNKIQYK-WIKILAGKTGQVMIVGD-----DDQS-IYGWRGAQIENIQKFLKDFKA 278 Query: 355 ET 356 ET Sbjct: 279 ET 280 >gi|254483191|ref|ZP_05096424.1| UvrD/REP helicase domain protein [marine gamma proteobacterium HTCC2148] gi|214036562|gb|EEB77236.1| UvrD/REP helicase domain protein [marine gamma proteobacterium HTCC2148] Length = 717 Score = 39.2 bits (89), Expect = 0.94, Method: Composition-based stats. Identities = 43/306 (14%), Positives = 83/306 (27%), Gaps = 34/306 (11%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL--ISTRPGMSIICI 113 ++ + + + + + AG G GKT + + WL SI+ + Sbjct: 1 MDVSDILSPLNEAQRDAVAAESQNMLVLAGAGSGKTRVLVHRIAWLIRAEEFSPWSILAV 60 Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173 + K ++ ML + + H+ Sbjct: 61 TFTNKAAKEM----RNRIEEMLQIPSHGMWVGTFHGLA----------HRLLKAHWKEAG 106 Query: 174 RTYSEERPDTFVGPHNTHGMA--VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 + + D+ + + DE S P + + I Sbjct: 107 LPQNFQILDSDDQLRLVKRVCREMELDE-SRWPPKQAMWYINSQKDEGLRSQHI------ 159 Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQ 291 L+ ++ Y+ +D L S G+F Q Sbjct: 160 -DAPHGDLYAQTMLQVYRAYEAACDRTGMVDFAELLLRAHELWLKSPEVLAHYQGRFRQI 218 Query: 292 EVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 V+ F N I+ A + P+I D D++ + RG IE+I + Sbjct: 219 LVDEFQDTNTIQYA-WLRVLAGKDIPVIAVGD-----DDQS-IYGWRGAKIENIQRF-GD 270 Query: 352 LIQETN 357 + T Sbjct: 271 DFKGTR 276 >gi|72160934|ref|YP_288591.1| superfamily I DNA/RNA helicase [Thermobifida fusca YX] gi|71914666|gb|AAZ54568.1| superfamily I DNA and RNA helicases [Thermobifida fusca YX] Length = 712 Score = 39.2 bits (89), Expect = 0.94, Method: Composition-based stats. Identities = 29/260 (11%), Positives = 53/260 (20%), Gaps = 29/260 (11%) Query: 37 PWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96 PWG E Q E + AV I AG G GKT Sbjct: 9 PWGRMPSAEEILRGLDPEQEEAVRAVRGP--------------VCILAGAGTGKTRAITH 54 Query: 97 MMLWLISTR--PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWY 154 + + ++T P I+ + + E+ L L + Sbjct: 55 RIAYAVATGVVPEQQILAVTFTTRAA-----GEMRGRLRALGAPRVQARTFHAAALRQLS 109 Query: 155 AELLEQSMGIDSKHYTITCRTYSEERPD-TFVGPHNTHGMAVFNDEASGTPDIINKSILG 213 + G +T + F E + Sbjct: 110 YFWADAVGGPKPTLIDSKIKTVAAAAHSCGFQVDRTELRDLAAEIEWAKVTQTRPTDYET 169 Query: 214 FFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRY 273 + R Y+ + + ++ + Sbjct: 170 AVAKEGRTPPM-----PPRDVARVYEAYEELRSEHNLLDFESML--ELTVAMIHERPDIA 222 Query: 274 GLDSDVARIEILGQFPQQEV 293 R ++ +F Sbjct: 223 ERIRSQYRYFVVDEFQDVNP 242 >gi|330468685|ref|YP_004406428.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora maris AB-18-032] gi|328811656|gb|AEB45828.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora maris AB-18-032] Length = 566 Score = 39.2 bits (89), Expect = 0.94, Method: Composition-based stats. Identities = 24/202 (11%), Positives = 47/202 (23%), Gaps = 24/202 (11%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 + +P Q E + A G GKT A L L+ P Sbjct: 34 GYEEPTPIQREAI------------GPLLAGRDLLGQAATGTGKT---AAFALPLLQRMP 78 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG-ID 165 + + L + + H + + + + + + + +D Sbjct: 79 DER-----PTGDPVALVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIGRQLRALD 133 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFF--TELNPNR 222 + + + V DEA + I T Sbjct: 134 NGVDVVVATPGRALDHIARGTLRLGNLATVVLDEADEMLDMGFAEDIEAILEHTPEQRQT 193 Query: 223 FWIMTSNTRRLNGWFYDIFNIP 244 + R++G P Sbjct: 194 VLFSATMPSRIDGMARAHLTDP 215 >gi|159153064|gb|ABW93040.1| lethal (1) G0020 [Drosophila melanogaster] Length = 244 Score = 39.2 bits (89), Expect = 0.94, Method: Composition-based stats. Identities = 27/207 (13%), Positives = 58/207 (28%), Gaps = 22/207 (10%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 +++A RG GK+ + + ++I + L L+ V K L ++ Sbjct: 18 MSLTAARGRGKSAAL-GLSIAAAVAFGYVNIYVTSPHPENLIT-LFEFVLKGFDALEYQE 75 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + + ++ ++ S+ + + DE Sbjct: 76 HADYTIIRSTNADYKKAIIRINITRSSRQTIQYIAPSDTHLLNAAD--------LLLIDE 127 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 A+ P L ++ M S Y+ L Q+ Sbjct: 128 AAAIP-------LPLVKKMIGPYLVFMASTING-----YEGTGRSLSLKLISQLQKDNNA 175 Query: 260 GIDSGFHEGIISRYGLDSDVARIEILG 286 E I + D + I +L Sbjct: 176 RPPLKLEESIRYQENDDIEKWLINLLC 202 >gi|159153046|gb|ABW93031.1| lethal (1) G0020 [Drosophila melanogaster] gi|159153048|gb|ABW93032.1| lethal (1) G0020 [Drosophila melanogaster] gi|159153050|gb|ABW93033.1| lethal (1) G0020 [Drosophila melanogaster] gi|159153052|gb|ABW93034.1| lethal (1) G0020 [Drosophila melanogaster] gi|159153054|gb|ABW93035.1| lethal (1) G0020 [Drosophila melanogaster] gi|159153056|gb|ABW93036.1| lethal (1) G0020 [Drosophila melanogaster] gi|159153058|gb|ABW93037.1| lethal (1) G0020 [Drosophila melanogaster] gi|159153060|gb|ABW93038.1| lethal (1) G0020 [Drosophila melanogaster] gi|159153062|gb|ABW93039.1| lethal (1) G0020 [Drosophila melanogaster] gi|159153066|gb|ABW93041.1| lethal (1) G0020 [Drosophila melanogaster] gi|159153068|gb|ABW93042.1| lethal (1) G0020 [Drosophila melanogaster] Length = 244 Score = 39.2 bits (89), Expect = 0.94, Method: Composition-based stats. Identities = 27/207 (13%), Positives = 58/207 (28%), Gaps = 22/207 (10%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 +++A RG GK+ + + ++I + L L+ V K L ++ Sbjct: 18 MSLTAARGRGKSAAL-GLSIAAAVAFGYVNIYVTSPHPENLIT-LFEFVLKGFDALEYQE 75 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + + ++ ++ S+ + + DE Sbjct: 76 HADYTIIRSTNADYKKAIIRINITRSSRQTIQYIAPSDTHLLNAAD--------LLLIDE 127 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 A+ P L ++ M S Y+ L Q+ Sbjct: 128 AAAIP-------LPLVKKMIGPYLVFMASTING-----YEGTGRSLSLKLISQLQKDNNA 175 Query: 260 GIDSGFHEGIISRYGLDSDVARIEILG 286 E I + D + I +L Sbjct: 176 RPPLKLEESIRYQENDDIEKWLINLLC 202 >gi|148927603|ref|ZP_01811071.1| hypothetical protein TM7_0318 [candidate division TM7 genomosp. GTL1] gi|147887052|gb|EDK72552.1| hypothetical protein TM7_0318 [candidate division TM7 genomosp. GTL1] Length = 284 Score = 39.2 bits (89), Expect = 0.94, Method: Composition-based stats. Identities = 24/171 (14%), Positives = 49/171 (28%), Gaps = 22/171 (12%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM-LWLISTRPGMS-IICIAN 115 F + ++ A+ A RG GK+T+ + LW + I+ ++ Sbjct: 50 FQREIYDLLADDLVGY------MAVVAFRGSGKSTIATQIFPLWALIGNLEKKFILTLSL 103 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 ++ Q +N L + R F G + + + Y Sbjct: 104 NQNQARNHLQNIKRQIEGNELLRKDFGPLEQQSDEWGSMSLVFPK--------YGARISA 155 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM 226 S E+ + + D D+ + + + N W Sbjct: 156 ASTEQSIRGIRHGAYRPDLIIAD------DVEDSNSVKTMEGRNKTHDWFT 200 >gi|33636497|gb|AAQ23546.1| RE64686p [Drosophila melanogaster] Length = 1008 Score = 39.2 bits (89), Expect = 0.94, Method: Composition-based stats. Identities = 27/207 (13%), Positives = 58/207 (28%), Gaps = 22/207 (10%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 +++A RG GK+ + + ++I + L L+ V K L ++ Sbjct: 275 MSLTAARGRGKSAAL-GLSIAAAVAFGYVNIYVTSPHPENLIT-LFEFVLKGFDALEYQE 332 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + + ++ ++ S+ + + DE Sbjct: 333 HADYTIIRSTNADYKKAIIRINITRSSRQTIQYIAPSDTHLLNAAD--------LLLIDE 384 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 A+ P L ++ M S Y+ L Q+ Sbjct: 385 AAAIP-------LPLVKKMIGPYLVFMASTING-----YEGTGRSLSLKLISQLQKDNNA 432 Query: 260 GIDSGFHEGIISRYGLDSDVARIEILG 286 E I + D + I +L Sbjct: 433 RPPLKLEESIRYQENDDIEKWLINLLC 459 >gi|24640662|ref|NP_572503.1| lethal (1) G0020 [Drosophila melanogaster] gi|32172463|sp|Q9W3C1|U202_DROME RecName: Full=Polycomb protein l(1)G0020; AltName: Full=p110 gi|22833026|gb|AAF46410.2| lethal (1) G0020 [Drosophila melanogaster] Length = 1008 Score = 39.2 bits (89), Expect = 0.94, Method: Composition-based stats. Identities = 27/207 (13%), Positives = 58/207 (28%), Gaps = 22/207 (10%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 +++A RG GK+ + + ++I + L L+ V K L ++ Sbjct: 275 MSLTAARGRGKSAAL-GLSIAAAVAFGYVNIYVTSPHPENLIT-LFEFVLKGFDALEYQE 332 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + + ++ ++ S+ + + DE Sbjct: 333 HADYTIIRSTNADYKKAIIRINITRSSRQTIQYIAPSDTHLLNAAD--------LLLIDE 384 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 A+ P L ++ M S Y+ L Q+ Sbjct: 385 AAAIP-------LPLVKKMIGPYLVFMASTING-----YEGTGRSLSLKLISQLQKDNNA 432 Query: 260 GIDSGFHEGIISRYGLDSDVARIEILG 286 E I + D + I +L Sbjct: 433 RPPLKLEESIRYQENDDIEKWLINLLC 459 >gi|332873098|ref|ZP_08441055.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter baumannii 6014059] gi|332738610|gb|EGJ69480.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter baumannii 6014059] Length = 587 Score = 39.2 bits (89), Expect = 0.95, Method: Composition-based stats. Identities = 20/149 (13%), Positives = 37/149 (24%), Gaps = 16/149 (10%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 E ++ + I+ G G GKT A ++ L P + + A Sbjct: 122 EEHLDLLTDPHQQAALQMVTRQSLSIITGGPGTGKTYTLARIIAVLSQAIPHIRVAMAAP 181 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 + + +Q+ P + L+ + S Sbjct: 182 TGKAAQRM----------------QEALQNSFNDPKLLESGLISAELRNQSTQTIHRLLG 225 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + F + DEAS Sbjct: 226 MGHSQTPRFNQKQPLPYDVIVVDEASMLD 254 >gi|296876617|ref|ZP_06900666.1| ATP-dependent RNA helicase [Streptococcus parasanguinis ATCC 15912] gi|296432376|gb|EFH18174.1| ATP-dependent RNA helicase [Streptococcus parasanguinis ATCC 15912] Length = 799 Score = 39.2 bits (89), Expect = 0.95, Method: Composition-based stats. Identities = 21/175 (12%), Positives = 42/175 (24%), Gaps = 9/175 (5%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 F P E + N + I++ + G GKT L+ + + Sbjct: 250 GFDNPTTRLNEVRLQISERVKERGENDSAGIYRLDL--PTGAGKTNLSMRYAFHQLVKQK 307 Query: 107 GMSIICIANSETQLKNTLWAEVSKW------LSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 I + L+ +E+ K L + + + + Sbjct: 308 KSRYFYITPFLSVLEQNA-SEIKKITGDAGVLEHHSNVIHKDDDNDDKKTLMLDYLIDSW 366 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 I +T + + N + DE P + Sbjct: 367 DSQIILTSMVQFFQTLFKTKSSNIRRFSNLANSVLILDEVQSLPIEVTTLFNLTM 421 >gi|225868893|ref|YP_002744841.1| RNA helicase [Streptococcus equi subsp. zooepidemicus] gi|225702169|emb|CAW99874.1| putative RNA helicase [Streptococcus equi subsp. zooepidemicus] Length = 364 Score = 39.2 bits (89), Expect = 0.95, Method: Composition-based stats. Identities = 20/189 (10%), Positives = 41/189 (21%), Gaps = 13/189 (6%) Query: 51 PHRWQLEFMEAVDVHC---HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107 P +WQ + + + V + G GKT W L +S + Sbjct: 6 PTQWQEKLAKLGFTNLTPIQEQVFQPIVDGKSLLGISPTGTGKTLAYLWPSLLRLSPKKA 65 Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 ++ +A + L+ +W L + S + Sbjct: 66 QQLLILAPNTELAGQ-LFEVTKEWAEPLGLTAQLFISGSSQKRQIE---------RLKKG 115 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227 I + DE + + P ++ Sbjct: 116 PEIIIGTPGRIFELVKLKKIKMMAINTIILDEYDDLLSDSQYQFVQKLSHHAPRDHQMIY 175 Query: 228 SNTRRLNGW 236 + Sbjct: 176 MSATNKVDQ 184 >gi|225457229|ref|XP_002284129.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297733882|emb|CBI15129.3| unnamed protein product [Vitis vinifera] Length = 2093 Score = 39.2 bits (89), Expect = 0.95, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 48/157 (30%), Gaps = 21/157 (13%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L FS + Q + + + + A G GKT ML L +T Sbjct: 1283 LYKFSHFNPIQTQTFHVLYHTDN-----------NVLLGAPTGSGKTISAELAMLHLFNT 1331 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 +P M +I IA + ++ + + +S L ++ + A + + Sbjct: 1332 QPDMKVIYIAPLKAIVRERMIDWKKRIVSQLGKE---MVEMTGDYTPDLMALMSADIIIS 1388 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + + R + + + DE Sbjct: 1389 TPEKWDGISRNWH-------NRGYVKKVGLMILDEIH 1418 >gi|195977805|ref|YP_002123049.1| ATP-dependent RNA helicase DEAD/DEAH box family [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974510|gb|ACG62036.1| ATP-dependent RNA helicase DEAD/DEAH box family [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 360 Score = 39.2 bits (89), Expect = 0.95, Method: Composition-based stats. Identities = 20/189 (10%), Positives = 41/189 (21%), Gaps = 13/189 (6%) Query: 51 PHRWQLEFMEAVDVHC---HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107 P +WQ + + + V + G GKT W L +S + Sbjct: 6 PTQWQEKLAKLGFTNLTPIQEQVFQPIVDGKSLLGISPTGTGKTLAYLWPSLLRLSPKKA 65 Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 ++ +A + L+ +W L + S + Sbjct: 66 QQLLILAPNTELAGQ-LFEVTKEWAEPLGLTAQLFISGSSQKRQIE---------RLKKG 115 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227 I + DE + + P ++ Sbjct: 116 PEIIIGTPGRIFELVKLKKIKMMAINTIILDEYDDLLSDSQYQFVQKLSHHAPRDHQMIY 175 Query: 228 SNTRRLNGW 236 + Sbjct: 176 MSATNKVDQ 184 >gi|184156690|ref|YP_001845029.1| exonuclease V subunit alpha [Acinetobacter baumannii ACICU] gi|183208284|gb|ACC55682.1| ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [Acinetobacter baumannii ACICU] gi|322506577|gb|ADX02031.1| recD [Acinetobacter baumannii 1656-2] gi|323516456|gb|ADX90837.1| exonuclease V subunit alpha [Acinetobacter baumannii TCDC-AB0715] Length = 583 Score = 39.2 bits (89), Expect = 0.95, Method: Composition-based stats. Identities = 20/149 (13%), Positives = 37/149 (24%), Gaps = 16/149 (10%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 E ++ + I+ G G GKT A ++ L P + + A Sbjct: 118 EEHLDLLTDPHQQAALQMVTRQSLSIITGGPGTGKTYTLARIIAVLSQAIPHIRVAMAAP 177 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 + + +Q+ P + L+ + S Sbjct: 178 TGKAAQRM----------------QEALQNSFNDPKLLESGLISAELRNQSTQTIHRLLG 221 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + F + DEAS Sbjct: 222 MGHSQTPRFNQKQPLPYDVIVVDEASMLD 250 >gi|146329137|ref|YP_001209325.1| exonuclease V, alpha subunit [Dichelobacter nodosus VCS1703A] gi|146232607|gb|ABQ13585.1| exonuclease V, alpha subunit [Dichelobacter nodosus VCS1703A] Length = 524 Score = 39.2 bits (89), Expect = 0.95, Method: Composition-based stats. Identities = 19/140 (13%), Positives = 39/140 (27%), Gaps = 22/140 (15%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 I+ G G GKT A ++ L++ P ++I A + + A +++ R Sbjct: 133 IINGGPGTGKTFTVARIVAALLARDPDLTIALAAPTGKAAQRLEIALHQAFITAQLTRPT 192 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + ++H + ++ V DEA Sbjct: 193 QLTTAQTVHRLLGVD--NTGTARYHEHYFLP--------------------YDVVIIDEA 230 Query: 201 SGTPDIINKSILGFFTELNP 220 S + + Sbjct: 231 SMLSLELAAQLFQALAPHTR 250 >gi|330844486|ref|XP_003294155.1| hypothetical protein DICPUDRAFT_43010 [Dictyostelium purpureum] gi|325075435|gb|EGC29323.1| hypothetical protein DICPUDRAFT_43010 [Dictyostelium purpureum] Length = 392 Score = 39.2 bits (89), Expect = 0.96, Method: Composition-based stats. Identities = 24/254 (9%), Positives = 59/254 (23%), Gaps = 48/254 (18%) Query: 42 GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101 G + +P Q ++A+ + + G GKT + + L Sbjct: 48 GLEDAGYIKPSPIQ---LKAIPLGISGIDMIAQAKS---------GTGKTVVFGVIALDY 95 Query: 102 IST----RPGMSIICIANSETQLKNT--LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 ++ +A + + ++SK+ + + + Sbjct: 96 CEMVGGVPRKPLVLIMAPTREIAVQIGDVVKQISKYCKRIKTQVFI------------GG 143 Query: 156 ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI---L 212 + + + I + + + DEA D I + Sbjct: 144 LKEDNDIHRLAGSQIIVGTPGRIKSLIENLQLRTDTLKMLILDEADKLLDASFTKIINWI 203 Query: 213 GFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP---------------LEDWKRYQIDTRT 257 N + L P + ++ ++ T Sbjct: 204 YTTMPANRQILAFSATYPSYLINILQAYMKSPIQIRLCSDTPSLEGIKQYYQVFKNPNST 263 Query: 258 VEGIDSGFHEGIIS 271 G + + I Sbjct: 264 NPGTNYKLFQEKIK 277 >gi|291520948|emb|CBK79241.1| DNA or RNA helicases of superfamily II [Coprococcus catus GD/7] Length = 920 Score = 39.2 bits (89), Expect = 0.96, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 78/229 (34%), Gaps = 35/229 (15%) Query: 16 HEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQP-HRWQLEFMEAVD--------VHC 66 E L A+ L+F+NF+ + K K ++ + + Q+ +EA Sbjct: 113 FEKLWDADQALTFENFIEFYTDIYTKNKIIQRQKELVRQEQMPSLEAFRLQPNSMQVGFI 172 Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 + + + + + G GKT +A+ M L R I+ + + K Sbjct: 173 RNLQKIYDAGEKRALLISATGTGKTYASAFAMRELGFQR----ILFLVHRGQIAKQ---- 224 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 ++ F+ G DS T +T+S+E D Sbjct: 225 ----------AKNSFKKVFAGTRSMGLVTGN---YQNYDSDVIFATIQTFSKE--DVLSK 269 Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 T A+ DEA + K ++ +FT P + MT+ + + Sbjct: 270 YSRTAFDAIVIDEAHHSAANSYKKVMDYFT---PRLWLGMTATPDKRDD 315 >gi|156543742|ref|XP_001605981.1| PREDICTED: similar to conserved hypothetical protein [Nasonia vitripennis] Length = 1277 Score = 39.2 bits (89), Expect = 0.96, Method: Composition-based stats. Identities = 28/204 (13%), Positives = 52/204 (25%), Gaps = 27/204 (13%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 +W + + NV I G GKT +L ++ T I+ Sbjct: 808 KWFNKRLNKYQKEAVKNVLKGLARPLPYVIFGPPGTGKTITVCEAILQILFTMSESRILI 867 Query: 113 IANSETQLKNTLWAEVSKW------LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 S + + L L H+ E +S+ + S G Sbjct: 868 ATPSNSSANLIAERLLDSNLLKPGDLIRLVAHHYLESESIPEKLIPYCVTADIASEGSRG 927 Query: 167 KHYTITCRTYSEERPDTFVGPH-------------------NTHGMAVFNDEASGTPDII 207 I R + + H + H V DEA + Sbjct: 928 DVNHIDPRGCKTNVTLSVLCQHRMIIGTCSALGILYNMGCKSDHFTHVIVDEAGQACEP- 986 Query: 208 NKSILGFFTELNPNRFWIMTSNTR 231 + ++ + I+ + + Sbjct: 987 -EIMIPLSLAHSGTTQVILAGDPK 1009 >gi|148976212|ref|ZP_01812936.1| hypothetical protein VSWAT3_18418 [Vibrionales bacterium SWAT-3] gi|145964306|gb|EDK29561.1| hypothetical protein VSWAT3_18418 [Vibrionales bacterium SWAT-3] Length = 711 Score = 39.2 bits (89), Expect = 0.96, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 47/177 (26%), Gaps = 35/177 (19%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 ++A RG GK++ L++ RPG +I+ A S Sbjct: 190 LILTADRGRGKSSTLGIAAALLLAERPGFNIVVTAPS----------------------- 226 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 ++ P +A+ S + + + + + DE Sbjct: 227 -----VKAIEPVFSHAKQRLDSCEVVNATHICHQGGSLRFVAPDELLKSKPECDLLLVDE 281 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256 A+ P + + + + S T F I E W Sbjct: 282 AAAIP-------IPMLKSMVDSYHRMAFSTTVHGYEGSGRGFGIKFEAWLSKHRPGW 331 >gi|190410694|ref|YP_001965264.1| hypothetical protein pFRL1.58c [Streptomyces sp. FR1] gi|84872709|gb|ABC67446.1| hypothetical protein pFRL1.58c [Streptomyces sp. FR1] Length = 901 Score = 39.2 bits (89), Expect = 0.96, Method: Composition-based stats. Identities = 25/173 (14%), Positives = 38/173 (21%), Gaps = 30/173 (17%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + P + I + G GKT A L + I+ Sbjct: 13 QRSAFRRWVGFPARSSVP--PQGARGTIVSATGSGKTITAAACAL---ESFADGRILVTV 67 Query: 115 NSETQLKNTLWA----------------EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 + L T A E L+ L R L+L + Sbjct: 68 PTLDLLAQTAQAWRLVGHRAPMVAVCSLENDAVLNSLGVRTTTNPIQLALWAGSGPVVVF 127 Query: 159 EQSMGIDSKHYTITCRTYSEER---------PDTFVGPHNTHGMAVFNDEASG 202 + + + R + G DEA G Sbjct: 128 ATYASLVDREDVDAPEGQRKVRGPLEAALAGGERLYGQRMDGFDLAIVDEAHG 180 >gi|332158624|ref|YP_004423903.1| DEXX-box atpase [Pyrococcus sp. NA2] gi|331034087|gb|AEC51899.1| DEXX-box atpase [Pyrococcus sp. NA2] Length = 397 Score = 39.2 bits (89), Expect = 0.98, Method: Composition-based stats. Identities = 27/174 (15%), Positives = 47/174 (27%), Gaps = 16/174 (9%) Query: 32 VMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT 91 + PW RW+ + + F + R +GKT Sbjct: 6 LTYMNPWWEG----REDYHVRRWREQRLHWRPKWLERLSLRPFSLNF---VLGPRQVGKT 58 Query: 92 TLNAWMMLWLISTRPGMSIICIA----NSETQLKNTLWAEVSKWLSMLPHR----HWFEM 143 T M+ L+ P +++ I S +L N L E + + E+ Sbjct: 59 TGIKLMIQELLKDNPPEAVLYINVEVLPSHHELLNLL-REFQELKEKEGIKIGYVFLDEV 117 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 SL G + + D T + + F G + Sbjct: 118 TSLEGWWRGVKPLIDAGLLERDVITVTGSSSLRVRRDIELFPGRRGGGRIIEVM 171 >gi|284053981|ref|ZP_06384191.1| PhoH-like protein [Arthrospira platensis str. Paraca] gi|291567510|dbj|BAI89782.1| phosphate starvation-inducible protein [Arthrospira platensis NIES-39] Length = 317 Score = 39.2 bits (89), Expect = 0.98, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 48/185 (25%), Gaps = 25/185 (13%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS--------AGRGIGKTTLNAWMMLWLIS 103 Q + + + AI G GKT L A + L + Sbjct: 94 RELQQDVLARTRRGQDIRAKTFRQRQYIQAIRTHDLTFCIGPAGTGKTYLAAIIALQALL 153 Query: 104 TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163 + +I + + L Q ++ + Y + + Sbjct: 154 SDQYERLILTRPA------------VEAGERLGFLPGDLQQKVNPYLRPLYDAIY--ELV 199 Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223 K + R E P ++ + V DEA T K + T L Sbjct: 200 DPEKAANLMERGVIEVAPIAYMRGRTLNNSFVILDEAQNTTPGQMKMV---LTRLGSRSR 256 Query: 224 WIMTS 228 ++T Sbjct: 257 MVVTG 261 >gi|284006731|emb|CBA71988.1| ATP-dependent RNA helicase [Arsenophonus nasoniae] Length = 449 Score = 39.2 bits (89), Expect = 0.98, Method: Composition-based stats. Identities = 22/191 (11%), Positives = 46/191 (24%), Gaps = 18/191 (9%) Query: 83 SAGRGIGKTTLNAWMMLWLISTRP-----GMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 S+ G GKT ++ + P I+ + + AE +K L+ H Sbjct: 54 SSPTGTGKTAAYLLPVIQHLLDFPRKRSGPPRILILTPTRELAMQV--AEQAKALAKYTH 111 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + + + Q + + T + + Sbjct: 112 LDIATITGGVSYVNHAEIFSENQDI--------VVATTGRLLQYIKEENFDCRAIETLIL 163 Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257 DEA D+ + + R M + +D L + Sbjct: 164 DEADRMLDMGFANDIETIAGETRWRKQTMLFSATLAGEAIHDFAERLLNNPHEID---AD 220 Query: 258 VEGIDSGFHEG 268 + + Sbjct: 221 PSRRERKKIQQ 231 >gi|257451672|ref|ZP_05616971.1| metal dependent phosphohydrolase [Fusobacterium sp. 3_1_5R] gi|317058233|ref|ZP_07922718.1| metal dependent phosphohydrolase [Fusobacterium sp. 3_1_5R] gi|313683909|gb|EFS20744.1| metal dependent phosphohydrolase [Fusobacterium sp. 3_1_5R] Length = 801 Score = 39.2 bits (89), Expect = 0.98, Method: Composition-based stats. Identities = 27/209 (12%), Positives = 53/209 (25%), Gaps = 21/209 (10%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + A G+GKT LW I G I+ + + + + + ++ K + Sbjct: 262 NVIVVAQTGLGKTEAG----LWWIGDHKGFFILPLRTAIDAIYDRIKNKIIKNDRVEERL 317 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKH--YTITCRTYSEERPDTFVGP-------HN 189 +SL + W E Q Y T + T Sbjct: 318 ALLHGESLESYLQLWEKEKELQEGSGFEWENYYIKTRQLSLPLTICTLDQLFPFVFRYRG 377 Query: 190 THGMA-------VFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFN 242 V DE + ++ T + G+ D+ Sbjct: 378 YEAKLATMAYSKVVIDEVQMYGPDLVGFLIVGLTMIQKMGGKFAILTATFP-GFIKDLMR 436 Query: 243 IPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271 ++K + + + I+ Sbjct: 437 EQGLEFKMSTPYVKEESRHSVQWIQKEIN 465 >gi|189502116|ref|YP_001957833.1| hypothetical protein Aasi_0717 [Candidatus Amoebophilus asiaticus 5a2] gi|189497557|gb|ACE06104.1| hypothetical protein Aasi_0717 [Candidatus Amoebophilus asiaticus 5a2] Length = 1640 Score = 39.2 bits (89), Expect = 0.98, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 2/40 (5%) Query: 309 EAIDDLYAPLIMGCDIAGEGGDKT--VVVFRRGNIIEHIF 346 E + Y ++M D AG+G D+T + R G+ + Sbjct: 774 EPQEKKYDDVVMSIDPAGDGKDETGYCIAKRSGDYYFIVE 813 >gi|300173131|ref|YP_003772297.1| terminase large subunit [Leuconostoc gasicomitatum LMG 18811] gi|299887510|emb|CBL91478.1| terminase large subunit [Leuconostoc gasicomitatum LMG 18811] Length = 242 Score = 39.2 bits (89), Expect = 0.98, Method: Composition-based stats. Identities = 20/170 (11%), Positives = 53/170 (31%), Gaps = 18/170 (10%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAG-RGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 E + + + + G RG GK+ A +++ I T+ ++ + + Sbjct: 3 EIEWNLPEMVSKAYAPLFNSKKRYIVYKGSRGSGKSEAEATKVIYDILTKSYVNWLVLRR 62 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 + + + + K + + F+ S + I R Sbjct: 63 YANTNRQSTFTLLQKVANRMGVGSLFQFNSS------------LPEITYKPTGQKILFRG 110 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTP-----DIINKSILGFFTELNP 220 + T + + ++ +EA D +++S+ G + + Sbjct: 111 ADKPLSITSISVETGNLCRLWVEEAYQLELEDAFDTVDESMRGIIADPDG 160 >gi|297527461|ref|YP_003669485.1| DNA topoisomerase (ATP-hydrolyzing) [Staphylothermus hellenicus DSM 12710] gi|297256377|gb|ADI32586.1| DNA topoisomerase (ATP-hydrolyzing) [Staphylothermus hellenicus DSM 12710] Length = 1220 Score = 39.2 bits (89), Expect = 0.98, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 36/124 (29%), Gaps = 5/124 (4%) Query: 15 LHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDV-HCHSNVNNS 73 L + + +C +N + + LE F + + + Sbjct: 25 LWDFGVCGKCSGETRNSFNALTLYRAFKEDLEDF---TSFFRKATGNLKPWGAQLTWVKR 81 Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 I A G+GKTTL +++ G ++ A + K + + Sbjct: 82 LLNGENTVIVAPTGMGKTTLLVVYSVYVA-KNYGKKVLFFAPTRALAKQIYNRIIEAAEN 140 Query: 134 MLPH 137 + Sbjct: 141 VCGT 144 >gi|262165307|ref|ZP_06033044.1| type I restriction-modification system restriction subunit R [Vibrio mimicus VM223] gi|262025023|gb|EEY43691.1| type I restriction-modification system restriction subunit R [Vibrio mimicus VM223] Length = 818 Score = 39.2 bits (89), Expect = 0.98, Method: Composition-based stats. Identities = 21/189 (11%), Positives = 42/189 (22%), Gaps = 24/189 (12%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 P +QL + N + + G GKT + +M L Sbjct: 164 GSGKSPRYYQLNAISKTIEAISRGQN-------RILLVMATGTGKTYTASQIMWKLWKAN 216 Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 I+ +A+ + + + L E + Sbjct: 217 VKKRILFLADRNFLVDDPM-----------------RKDFLPFKDVMTKITGREIDPAYE 259 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225 + T E+ F + DE + + Sbjct: 260 VQLALYQSTTGQEDHQKVFKQVSRDFFDLIIVDECHRGSASKESAWREILEYFDSATQIG 319 Query: 226 MTSNTRRLN 234 +T+ + N Sbjct: 320 LTATPKETN 328 >gi|210075893|ref|XP_503715.2| YALI0E09012p [Yarrowia lipolytica] gi|199426896|emb|CAG79304.2| YALI0E09012p [Yarrowia lipolytica] Length = 1457 Score = 39.2 bits (89), Expect = 0.98, Method: Composition-based stats. Identities = 30/240 (12%), Positives = 61/240 (25%), Gaps = 34/240 (14%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR----PGM 108 +QL+ + + +N G+GKT + +M +L T P + Sbjct: 699 EYQLKGLNWLANLYEQGINGILADEM--------GLGKTVQSISVMAYLAETHNIWGPYL 750 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 I + E+SK++ ++ + +++ Sbjct: 751 VIAPASTLHN-----WQQEISKFVPDFKVLPYWGNGKDRKILRKF---WDRKNVKYTRDS 802 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 T + + DEA + NR ++T Sbjct: 803 PFHVLVTSYQLVVSDAQYFSRVKWQYMILDEAQAIKSSSSSRWKSLLAFQCRNRL-LLTG 861 Query: 229 NTRRLNGWFYDIFNIPLEDW---KRYQIDTRTVEGIDSGFH-EGIISRYGLDSDVARIEI 284 I N E W S + + I S S + + ++ Sbjct: 862 TP---------IQNSMQELWALLHFIMPSLFDSHDEFSEWFSKDIESHAKEKSQLDQQQL 912 >gi|145297543|ref|YP_001140384.1| hypothetical protein ASA_0464 [Aeromonas salmonicida subsp. salmonicida A449] gi|142850315|gb|ABO88636.1| conserved hypothetical protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 688 Score = 39.2 bits (89), Expect = 0.98, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 61/225 (27%), Gaps = 49/225 (21%) Query: 39 GIKGKPLEHFSQPHRWQ-----LEFMEAVDVHCHSNVNNSNPTIFKCAISAG-RGIGKTT 92 G L + P WQ + + + + + + + RG GK++ Sbjct: 143 GDPALSLLPPTSPQPWQPIGAERPLSDDQALALPAIQRVLHGHRRRPLVLSADRGRGKSS 202 Query: 93 LNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSG 152 L L+ +P + I+ A S+ + L+A ++ L Sbjct: 203 LLGLAAAGLLRQQPDLKIVVTAPSQATVAT-LFAHAARAL-------------------- 241 Query: 153 WYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212 + + + + + DEA+ P + +++L Sbjct: 242 ------DTTQEQLVGLEFC---SPDRLVHEALQP------DLLLVDEAAAIPTPLLEAML 286 Query: 213 GFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257 I+ + T F++ + Q Sbjct: 287 A-------RHSRIVFATTEHGYEGTGRGFHLRFKRVLDRQTPDWQ 324 >gi|118110894|ref|XP_428333.2| PREDICTED: similar to Activating signal cointegrator 1 complex subunit 3-like 1, partial [Gallus gallus] Length = 129 Score = 39.2 bits (89), Expect = 0.98, Method: Composition-based stats. Identities = 14/125 (11%), Positives = 27/125 (21%), Gaps = 10/125 (8%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + A G GKT + +L ++ + I E + K+ L + Sbjct: 10 NVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITPMEALAEQVFMDWYEKFQERLNKK 69 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 S + T + + + D Sbjct: 70 VVLLTGETSTDLK----------LLGKGNIIISTPEKWDILSRRWKQRKNVQNVNLFIVD 119 Query: 199 EASGT 203 E Sbjct: 120 EVHLI 124 >gi|46580590|ref|YP_011398.1| terminase large subunit [Desulfovibrio vulgaris str. Hildenborough] gi|46450009|gb|AAS96658.1| terminase, large subunit, putative [Desulfovibrio vulgaris str. Hildenborough] Length = 641 Score = 39.2 bits (89), Expect = 0.98, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 42/144 (29%), Gaps = 7/144 (4%) Query: 35 FFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLN 94 W + + +P RW+ E C S P I I GKT L Sbjct: 37 VTEWCERHFRIIGGQRPGRWRREVFPY---TCTIMDAYSLPFIRVIGICGPPQTGKTALE 93 Query: 95 AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWY 154 + W I PG ++ + + + + + + +L E L Sbjct: 94 LGCLAWAIDRDPGP-VLMVLDQQDTAREMA---KDRVIPLLKASPPLEQYITGLADDETA 149 Query: 155 AELLEQSMGIDSKHYTITCRTYSE 178 + + M I R ++ Sbjct: 150 KSINLRHMTIHFGWAGSVSRLANK 173 >gi|168001533|ref|XP_001753469.1| predicted protein [Physcomitrella patens subsp. patens] gi|162695348|gb|EDQ81692.1| predicted protein [Physcomitrella patens subsp. patens] Length = 624 Score = 39.2 bits (89), Expect = 0.99, Method: Composition-based stats. Identities = 20/154 (12%), Positives = 38/154 (24%), Gaps = 13/154 (8%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 +S G+GKT + A +M P I+ A S + ++ +++ Sbjct: 82 NTLVSLPTGLGKTLIAAVVMYNYFRWFPTGKIVFTAPSRPLVMQ----QIEACHNIMGIP 137 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + AE + S P + + D Sbjct: 138 QEMAIDMTGQMSPPQRAEEWRSRRVFYVTPQCLEKDIQSGTCPVN-------DIVCLVVD 190 Query: 199 EASGTPDIINK--SILGFFTELNPNRFWIMTSNT 230 EA + R +T+ Sbjct: 191 EAHRATGNFSYCVVTRELLARNIKFRILALTATP 224 >gi|124027804|ref|YP_001013124.1| reverse gyrase [Hyperthermus butylicus DSM 5456] gi|123978498|gb|ABM80779.1| Reverse gyrase 2 [Hyperthermus butylicus DSM 5456] Length = 1183 Score = 39.2 bits (89), Expect = 1.0, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 48/152 (31%), Gaps = 12/152 (7%) Query: 56 LEFMEAVDVH----CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 EF E + H AI A G+GKTTL + ++ S G+ + Sbjct: 42 EEFFEKLTGHKLWSAQRTWAKRMLQGESIAIVAPTGVGKTTLLSVYAVYRASQ--GLKVY 99 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + +E + + L L R ++ +S + S E+S+ + Sbjct: 100 YLLPTENLARQVT-----RKLETLSSRLGGGIRVVSYYSSLPK-RAKEESLRTIEERSYD 153 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 T + + ++ D+ Sbjct: 154 ILVTTTAFLSRRWSLIEGIRFDSILVDDVDAV 185 >gi|24372534|ref|NP_716576.1| ATP-dependent RNA helicase SrmB [Shewanella oneidensis MR-1] gi|24346546|gb|AAN54021.1|AE015540_1 ATP-dependent RNA helicase SrmB [Shewanella oneidensis MR-1] Length = 420 Score = 39.2 bits (89), Expect = 1.0, Method: Composition-based stats. Identities = 21/223 (9%), Positives = 46/223 (20%), Gaps = 20/223 (8%) Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-----SIICIANSET 118 A G GKT L + P ++ + + Sbjct: 25 TTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQHLIDFPRRYSGQARVLILTPT-- 82 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 E++ + H Q L++ Q + + Sbjct: 83 -------RELASQIHRYAC-HLATDQGLNIAIITGGVPYAPQEEALKGNIDILVATPGRL 134 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWF 237 + DEA D+ +++ E + ++ S T +G Sbjct: 135 MEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQNMLFSATLEGSGVI 194 Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280 + + + + I Sbjct: 195 RFAREVLNDPIEID----VDAPRKEKAKIHQWIHLADDKDHKF 233 >gi|114048723|ref|YP_739273.1| ATP-dependent RNA helicase SrmB [Shewanella sp. MR-7] gi|113890165|gb|ABI44216.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7] Length = 420 Score = 39.2 bits (89), Expect = 1.0, Method: Composition-based stats. Identities = 21/223 (9%), Positives = 46/223 (20%), Gaps = 20/223 (8%) Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-----SIICIANSET 118 A G GKT L + P ++ + + Sbjct: 25 TTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQHLIDFPRRYSGQARVLILTPT-- 82 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 E++ + H Q L++ Q + + Sbjct: 83 -------RELASQIHRYAC-HLATDQGLNIAIITGGVPYAPQEEALKGNIDILVATPGRL 134 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWF 237 + DEA D+ +++ E + ++ S T +G Sbjct: 135 MEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQNMLFSATLEGSGVI 194 Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280 + + + + I Sbjct: 195 RFAREVLNDPIEID----VDAPRKEKAKIHQWIHLADDKDHKF 233 >gi|328791598|ref|XP_393083.4| PREDICTED: Fanconi anemia group M protein [Apis mellifera] Length = 1194 Score = 39.2 bits (89), Expect = 1.0, Method: Composition-based stats. Identities = 28/212 (13%), Positives = 54/212 (25%), Gaps = 19/212 (8%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + G+GKT + A +M P II +A ++ + ++A Sbjct: 49 NTLVCLPTGLGKTFIAAVVMYNFWRWYPWGKIIFLAPTKPLVTQQIFAC----------- 97 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 H + A L++ SK I + + D Sbjct: 98 HNTMGIPSAETIELTGAINLKKREVAWSKKRIIFATPQVFHNDLNKNIVPSDLIKCIVID 157 Query: 199 EASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY-----Q 252 EA + N N + S T ++ + + + Sbjct: 158 EAHKALGKHSYCECIRILNGKNQNFRVLALSATPG--NKIDNVHEVLQNLLIAHVELRDE 215 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 V I+ E I+ + + Sbjct: 216 TSLDIVPYINKKKVEIILVPLNNKLTEYKEKY 247 >gi|257052779|ref|YP_003130612.1| helicase domain protein [Halorhabdus utahensis DSM 12940] gi|256691542|gb|ACV11879.1| helicase domain protein [Halorhabdus utahensis DSM 12940] Length = 952 Score = 39.2 bits (89), Expect = 1.0, Method: Composition-based stats. Identities = 26/246 (10%), Positives = 63/246 (25%), Gaps = 25/246 (10%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G+GKT + L++ I+ + L++ +W H + Q Sbjct: 125 GLGKTIEAGLITSELLARNRAERILIVTP--ANLRD-------QWREAFEHFFHIDAQIT 175 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA------ 200 + + + + ++ + V DEA Sbjct: 176 DRRNRRAMEKEVPPGTSVWEYYSKHIVSIDYAKQAHIHNQIRSQDWDMVIIDEAHQAARP 235 Query: 201 ----SGTPDIINKSILGFFTELNPNRFWIMTSNT-RRLNGWFYDIFNIPLEDWKRYQIDT 255 +G + + ++T+ F + + D Sbjct: 236 HTASAGQAPSKLRWEFAKAITEDATHALLLTATPHNGYTDSFASLLRMVNSDIVAGDAH- 294 Query: 256 RTVEGIDSGFHEG--IISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 I+ + + R + + FP+++ E + +A+ D Sbjct: 295 --NPSINQELAKRHVVQRRRKDVEEWFGDDNENPFPERDQATVDVTPTEYEKTAYDAVRD 352 Query: 314 LYAPLI 319 L+ Sbjct: 353 YGDTLV 358 >gi|170759542|ref|YP_001787275.1| hypothetical protein CLK_1337 [Clostridium botulinum A3 str. Loch Maree] gi|169406531|gb|ACA54942.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch Maree] Length = 598 Score = 39.2 bits (89), Expect = 1.0, Method: Composition-based stats. Identities = 14/113 (12%), Positives = 31/113 (27%), Gaps = 3/113 (2%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS---ML 135 K AI RG KTT+ + + + + K + + Sbjct: 113 KVAIIEPRGFAKTTIFDMAVSVWLHCYEKSLFTLLGAKTDSDATQFLDSIKKVFNDNKKI 172 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188 + + +G + + + Y T + + R + + G Sbjct: 173 IKCFGKLINIKVIKSNGERYTVNSNEVEFTNGTYIKTVGSGTSVRGNNWGGIR 225 >gi|320588535|gb|EFX01003.1| DNA replication helicase [Grosmannia clavigera kw1407] Length = 1602 Score = 39.2 bits (89), Expect = 1.0, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 40/134 (29%), Gaps = 21/134 (15%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA----------------EVSK 130 G GKTT A ++ R G S++ + + T + N L E+S Sbjct: 1088 GTGKTTTIAHII--RALVRQGKSVLLASYTHTAVDNILLKLKPGSSAEKVGKVDHSEISI 1145 Query: 131 WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNT 190 P + E++ ++ + +++ + T H Sbjct: 1146 LRLGAPAKVHPEVRDFAVLAEAPATQTSFEAIRRAWHDSPVVATTCLGIGH---ALFHER 1202 Query: 191 HGMAVFNDEASGTP 204 DEAS Sbjct: 1203 TFDYCIVDEASQIT 1216 >gi|134298866|ref|YP_001112362.1| metal dependent phosphohydrolase [Desulfotomaculum reducens MI-1] gi|134051566|gb|ABO49537.1| CRISPR-associated helicase, Cas3 family [Desulfotomaculum reducens MI-1] Length = 731 Score = 39.2 bits (89), Expect = 1.0, Method: Composition-based stats. Identities = 19/186 (10%), Positives = 45/186 (24%), Gaps = 18/186 (9%) Query: 60 EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119 + +C P +F + G GKT + L I + + Sbjct: 220 YKILANCREKAEC-EPGLFTLTV--PTGGGKTLSSLSFALRHAIRYEKERIFYVIPFTSI 276 Query: 120 LKN--TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY-------- 169 ++ ++ V ++L H F + ++++ Sbjct: 277 IEQNAMVFKRVIGEENVLEHHSNFAYPQEDQWEMENDLADKLAQQKLATENWDMPVIATT 336 Query: 170 -TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI----INKSILGFFTELNPNRFW 224 + + HN + DEA P +++ + Sbjct: 337 NVQFFESLFAAKSSRCRKIHNLANSVIIIDEAQMIPTGFLKPCLNAVVELVANYHATIVL 396 Query: 225 IMTSNT 230 + Sbjct: 397 CTATQP 402 >gi|309360315|emb|CAP31319.2| hypothetical protein CBG_12327 [Caenorhabditis briggsae AF16] Length = 1077 Score = 39.2 bits (89), Expect = 1.0, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 50/160 (31%), Gaps = 14/160 (8%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 Q + + +N C+++AGRG GK+ + L +I Sbjct: 270 TACQAKALLRFLDVITEKQSNVT-----CSLTAGRGRGKSAAV-GLSLAGAVAFGYTNIF 323 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ----SLSLHPSGWYAELLEQSMGIDSK 167 + + LK L+ V K L L ++ + + + + + + + Sbjct: 324 VTSPTPENLKT-LFEFVVKGLDALDYQEHTDYELIQSANPEFKNCLVRVQVFREHKQTIQ 382 Query: 168 HYTIT---CRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + I C T + + DEA+ P Sbjct: 383 VHIIFFLNCNTDIFQYISPTDVEKLGQCELIVIDEAAAIP 422 >gi|291544275|emb|CBL17384.1| Phosphate starvation-inducible protein PhoH, predicted ATPase [Ruminococcus sp. 18P13] Length = 324 Score = 39.2 bits (89), Expect = 1.0, Method: Composition-based stats. Identities = 29/203 (14%), Positives = 51/203 (25%), Gaps = 27/203 (13%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT L M + I+ + + L + Sbjct: 136 GTGKTYLAVAMAVKAFRAHAVSRIVLTRPA------------VEAGEKLGFLPGDMQDKV 183 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + Y L M + E P ++ + DEA T Sbjct: 184 DPYLRPLYDALY--EMLGAESVQRNMEKGSIEVAPLAYMRGRTLDEAFIILDEAQNTTPE 241 Query: 207 INKSILGFFTELNPNRFWIMTSN------TRRLNGWFYDIFNIPL--EDWKRYQIDTRTV 258 K T L + ++T + + + +D +Q R V Sbjct: 242 QIKMF---LTRLGNSSKMVITGDITQIDLPDAKRSGLVEAMKVLRNVDDIAIHQFQERDV 298 Query: 259 EGIDSGFHEGIISRYGLDSDVAR 281 + + II+ Y + R Sbjct: 299 --VRHKLVQDIIAAYEKYQNERR 319 >gi|167383584|ref|XP_001736589.1| hypothetical protein [Entamoeba dispar SAW760] gi|165900952|gb|EDR27163.1| hypothetical protein, conserved [Entamoeba dispar SAW760] Length = 976 Score = 39.2 bits (89), Expect = 1.0, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 51/150 (34%), Gaps = 15/150 (10%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + + ++ N+ +I+AGRG GK+ + + +I A Sbjct: 248 QAKCVVSLFDSLKEKTLNTT-----ISITAGRGRGKSAAL-GLTIACSVALGYSNIFVTA 301 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 S +K + K L + + + + S + ++ ++ + + + Sbjct: 302 PSPENVKTV-FEFAVKGLEIFGMKEHLDFDVIQTTKSEYGKAVVRVNIHQNHR------Q 354 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 T P+ + + DEA+ P Sbjct: 355 TIQYILPN--DTAQLSQAELLVIDEAAAIP 382 >gi|325914238|ref|ZP_08176588.1| hypothetical protein XVE_0455 [Xanthomonas vesicatoria ATCC 35937] gi|325539493|gb|EGD11139.1| hypothetical protein XVE_0455 [Xanthomonas vesicatoria ATCC 35937] Length = 951 Score = 39.2 bits (89), Expect = 1.0, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 55/167 (32%), Gaps = 24/167 (14%) Query: 60 EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW---LISTRPGMS------- 109 E H N++NP + + A+ G GKTT+ A ++ W P Sbjct: 65 ERFLDHLKKASNDANPGLMRLALKLATGAGKTTVMAMLIAWQTVNAVRHPQSKKFTRGFL 124 Query: 110 -IICIANSETQLKNTLWAEVSKWL---SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 + + +L+ L + + ++P ++ + + ++A L + M + Sbjct: 125 LVAPGLTIKDRLRVLLPNDADSYYASREIVPRDMLADLDKTKIIITNYHAFKLRERMELS 184 Query: 166 S-KHYTITCRTYSEERPDTFVGPHNTHGM---------AVFNDEASG 202 + RT SE G M NDEA Sbjct: 185 KGGRRLLQGRTGSELDTQETEGQMLQRVMPELMGLKNILAINDEAHH 231 >gi|300121423|emb|CBK21803.2| unnamed protein product [Blastocystis hominis] Length = 1028 Score = 39.2 bits (89), Expect = 1.0, Method: Composition-based stats. Identities = 23/159 (14%), Positives = 46/159 (28%), Gaps = 11/159 (6%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFK-CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 + + A+ C + S T +++A RG GK+ + + ++ A Sbjct: 266 QVLRALTGLCRTADQASAKTRQTTVSVTASRGRGKSAAL-GLTVAGAIGFGYSNVFVTAP 324 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 S ++ + L + E + S + K + + Sbjct: 325 SAENVQT----LFDFAVKGLKALKFAEHTDFEVIYSPREEQAHWVVRVNVFKTHRQVVQF 380 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF 214 DEA+ P + KS+LG Sbjct: 381 VDPAEASKLAQA-----ELCIVDEAAAIPLPLVKSLLGP 414 >gi|270295175|ref|ZP_06201376.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274422|gb|EFA20283.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 283 Score = 39.2 bits (89), Expect = 1.0, Method: Composition-based stats. Identities = 32/259 (12%), Positives = 70/259 (27%), Gaps = 34/259 (13%) Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN----SETQLKN 122 + + + + R GK++L M L + + I +E + Sbjct: 23 RKQLKELLGSGINVMLISPRRWGKSSLVKVAMDELTQEDKHIRVCFIDAFSIKTEAEFYR 82 Query: 123 TLWAEVSKWLSMLPHRHWFEMQSL------SLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 EV + + +++ S+ + L + ++ + ++ Sbjct: 83 IFAREVISCTASTLEKRLEDVKQFLKAVSPSITLKSDPTDTLSFDLKLELEEKSVMEILE 142 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPDII-NKSILGFFTELNPNRFWIMT-------- 227 E+ G H + V DE + KS+ G + + Sbjct: 143 LPEKIAAAKGIH----LIVCIDEFQQLALLPGYKSMEGKMRSAWQKQQQVSYCFYGSKRH 198 Query: 228 ---------SNTRRLNGWFYDIFNIPLEDWKRYQID--TRTVEGIDSGFHEGIISRYGLD 276 SN G + I E+W + ++ RT + I E + Sbjct: 199 MMMDIFNNSSNPFYRFGQVLFLQKIKKEEWVPFIVNAFHRTNKEISEQQAEQLCDIVKCH 258 Query: 277 SDVARIEILGQFPQQEVNN 295 S + + Sbjct: 259 SWYLQQLCYFIWSGTSEKV 277 >gi|67465259|ref|XP_648814.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS] gi|56465091|gb|EAL43429.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS] Length = 978 Score = 39.2 bits (89), Expect = 1.0, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 51/150 (34%), Gaps = 15/150 (10%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + + ++ N+ +I+AGRG GK+ + + +I A Sbjct: 248 QAKCVVSLFDSLKEKTLNTT-----ISITAGRGRGKSAAL-GLTIACSVALGYSNIFVTA 301 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 S +K + K L + + + + S + ++ ++ + + + Sbjct: 302 PSPENVKTV-FEFAVKGLEIFGMKEHLDFDVVQTTKSEYGKAVVRVNIHQNHR------Q 354 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 T P+ + + DEA+ P Sbjct: 355 TIQYILPN--DTAQLSQAELLVIDEAAAIP 382 >gi|300766664|ref|ZP_07076581.1| DNA replication protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300495764|gb|EFK30915.1| DNA replication protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 261 Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 26/203 (12%), Positives = 56/203 (27%), Gaps = 13/203 (6%) Query: 4 LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEF----- 58 + T ++L+ + + + + W G PL + WQ++ Sbjct: 26 KLPTKEELDHQTIDRANAGVIANRKRYYYRMSV-W-SGGVPLRFS--FNDWQVDKQPNQA 81 Query: 59 -MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 + F A++ G G+GKT+L +M L++ + A Sbjct: 82 KARELGNQAFKLARQLETNQFNVALAGGPGVGKTSLALAIMYQLMNAGQTAMFVSTAELL 141 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177 + A + + + L + E + + K +T Sbjct: 142 RLVNEKYEAPDVRQRLLYILKG--MQNVDVLVLDDFGTEGGKPTEKGFYKPVHKDLQTLM 199 Query: 178 EERPD-TFVGPHNTHGMAVFNDE 199 + + HN Sbjct: 200 YQVANARCDFDHNEVKHITIITT 222 >gi|242768912|ref|XP_002341663.1| DNA replication helicase Dna2, putative [Talaromyces stipitatus ATCC 10500] gi|218724859|gb|EED24276.1| DNA replication helicase Dna2, putative [Talaromyces stipitatus ATCC 10500] Length = 1657 Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 37/118 (31%), Gaps = 3/118 (2%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTT A ++ G S++ + + T + N L + + L ++ Sbjct: 1143 GTGKTTTIAHII--RALVSQGKSVLLTSYTHTAVDNILLKIKNDNIRTLRLGAVAKVHPE 1200 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 A ++S+ + Y + + + DEAS Sbjct: 1201 VQQFVDLAAIP-KKSIEELKESYERSEIVATTCLGINHPIFNERIFDYCIVDEASQIT 1257 >gi|167760904|ref|ZP_02433031.1| hypothetical protein CLOSCI_03292 [Clostridium scindens ATCC 35704] gi|167661507|gb|EDS05637.1| hypothetical protein CLOSCI_03292 [Clostridium scindens ATCC 35704] Length = 793 Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 19/186 (10%), Positives = 48/186 (25%), Gaps = 21/186 (11%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST-RPGMS 109 P +Q + + N + ++ G GKT A+ +++ + R Sbjct: 166 PRYYQCNAINRAVEAVANGQN-------RLLLTMATGTGKTY-TAFQIVYRLWKSRTKKR 217 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I+ +A+ + + + + + + +R + + Sbjct: 218 ILFLADRNVLVDDPMRKDFKFFNADSNNR------------KMTKIRDKKVDKAYEVYFA 265 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 T DT+ + DE + + MT+ Sbjct: 266 IYQGVTGQIGFADTYKEFSPDFFDLIIVDECHRGSAKEDSAWRKILEYFKNATQIGMTAT 325 Query: 230 TRRLNG 235 + Sbjct: 326 PKETKD 331 >gi|320590134|gb|EFX02577.1| dead box helicase [Grosmannia clavigera kw1407] Length = 1329 Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 29/246 (11%), Positives = 71/246 (28%), Gaps = 19/246 (7%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 ++ G+GKT + A ++L ++ +A ++ VS+ + Sbjct: 204 NTLVALPTGLGKTFIAATVILNFYRWTKDAKMVFVAPTK--------PLVSQQVEACFTI 255 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 +L +G A L + + + +T +T + + P + + D Sbjct: 256 AGIPRSETTL-LTGDTAPALRAAEWASKRLFFMTPQTLQNDLSKGYADP--KSIVLLVID 312 Query: 199 EASGTP-DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257 EA D ++GF + + + T + + Sbjct: 313 EAHRATGDYAYVKVIGFIRRFTKSFRVLALTATPGST------VEGVQDVINNLGVSHVE 366 Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILGQFP-QQEVNNFIPHNYIEEAMSREAIDDLYA 316 + +S + ++ V + +F + P + D + Sbjct: 367 IRTEESLDIRQYVHGRDVERFVLDPSVEIKFVQEHLSKALKPFCEKLDQQKIWYGRDPMS 426 Query: 317 PLIMGC 322 + G Sbjct: 427 LTMFGL 432 >gi|19112388|ref|NP_595596.1| mitochondrial ATP-dependent RNA helicase Mss116 (predicted) [Schizosaccharomyces pombe 972h-] gi|74581875|sp|O13622|MS116_SCHPO RecName: Full=ATP-dependent RNA helicase mss116, mitochondrial; Flags: Precursor gi|2257514|dbj|BAA21410.1| ATP-DEPENDENT RNA HELICASE MSS116 PRECURSOR [Schizosaccharomyces pombe] gi|13810214|emb|CAC37365.1| mitochondrial ATP-dependent RNA helicase Mss116 (predicted) [Schizosaccharomyces pombe] Length = 535 Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 24/216 (11%), Positives = 55/216 (25%), Gaps = 6/216 (2%) Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 E + +N P + A G GKT A++++ G + + + Sbjct: 58 FEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKT--LAFLLVAFKDVLKGKPRLNSSKIHS 115 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 + + + + +S G E ++ + + I E Sbjct: 116 VILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLE 175 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINK----SILGFFTELNPNRFWIMTSNTRRLN 234 + + + DEA D+ +I T + + +++ Sbjct: 176 DHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFSATMPPKVS 235 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGII 270 F I + + F Sbjct: 236 NVFRGILGTDFKLINCLDPNEPPTHERVPQFVIETK 271 >gi|117921774|ref|YP_870966.1| ATP-dependent RNA helicase SrmB [Shewanella sp. ANA-3] gi|117614106|gb|ABK49560.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3] Length = 419 Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 22/220 (10%), Positives = 46/220 (20%), Gaps = 20/220 (9%) Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP-----GMSIICIANSET 118 A G GKT L + P I+ + + Sbjct: 25 TTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQHLIDFPRRYSGHARILILTPT-- 82 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 E++ + H Q L++ Q + + Sbjct: 83 -------RELASQIHRYAC-HLATGQGLNIAIITGGVPYGPQEEALKDNIDILVATPGRL 134 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWF 237 + DEA D+ +++ E + ++ S T +G Sbjct: 135 MEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQNMLFSATLEGSGVI 194 Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDS 277 + + + + I Sbjct: 195 RFAREVLNDPIEID----VDAPRKEKAKIHQWIHLADDKE 230 >gi|327261478|ref|XP_003215557.1| PREDICTED: activating signal cointegrator 1 complex subunit 3-like [Anolis carolinensis] Length = 2207 Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 19/176 (10%), Positives = 45/176 (25%), Gaps = 23/176 (13%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L F+ + Q + + + A G GKT + A + ++ I Sbjct: 1328 LYKFTHFNPIQTQIFHTLYHTD-----------CNVLLGAPTGSGKT-VAAELAIFRIFN 1375 Query: 105 RPG-MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163 + IA + ++ + + L R ++ + + Sbjct: 1376 HYPTSKAVYIAPLKALVREIIEDWKIRIEEKLGKRVVELTGDVTPDMR---SIAQADLIV 1432 Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219 + + R++ + DE D + + N Sbjct: 1433 TTPEKWDGVSRSWQNRSYV-------QKVSILIIDEIHLLGDERGPVLEVIVSRTN 1481 >gi|91776957|ref|YP_546713.1| hypothetical protein Mfla_2607 [Methylobacillus flagellatus KT] gi|91710944|gb|ABE50872.1| protein of unknown function DUF450 [Methylobacillus flagellatus KT] Length = 1022 Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 23/182 (12%), Positives = 45/182 (24%), Gaps = 12/182 (6%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP--GM 108 P QL+ + + H + I G GK+ AW+ L S Sbjct: 287 PRYHQLDAVRKMVAHARE-----QGSGRNYLIQHSAGSGKSNSIAWLAHRLASLHDAQDQ 341 Query: 109 SI---ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 + + + L L + ++ + + L + + + Sbjct: 342 KVFHSVVVVTDRRVLDQQLQNTIYQFEHKTGVVEKIDEDTQQLARALSQGTPIIITTIQK 401 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNRFW 224 + T + + AV DEA S ++ G Sbjct: 402 FPFISQALSTLERKGAGVKIDTAGRRF-AVIVDEAHSSQSGETATALRGMLNRDGIEAAI 460 Query: 225 IM 226 Sbjct: 461 AA 462 >gi|50086398|ref|YP_047908.1| putative type I restriction-modification system (HsdR) [Acinetobacter sp. ADP1] gi|49532374|emb|CAG70086.1| putative type I restriction-modification system (HsdR) [Acinetobacter sp. ADP1] Length = 1020 Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 55/168 (32%), Gaps = 11/168 (6%) Query: 39 GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98 G + E P QL+ + + H +N + N I A G GK+ AW+ Sbjct: 270 GFRYIEKETMIFPRYHQLDAVRKLTKHSKANGSGHNYLIQHSA-----GSGKSNTIAWLA 324 Query: 99 --LWLISTRPGMSI---ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153 L + I I + L L ++++ + +L L + Sbjct: 325 HQLASMHNADDKKIFNSIIVITDRIVLDRQLQETIAQFEHKDGVVQKIDENTLQLTNALA 384 Query: 154 YAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + + + + RT +++ + + AV DEA Sbjct: 385 SNVPIIITTIQKFPYIMQSIRTQAKKGIKVDLSTEGKNF-AVIVDEAH 431 >gi|332975817|gb|EGK12696.1| type I restriction-modification system R subunit [Psychrobacter sp. 1501(2011)] Length = 811 Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 24/190 (12%), Positives = 47/190 (24%), Gaps = 26/190 (13%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST- 104 P +QL+ + N + + G GKT A+ ++W + Sbjct: 163 GSGKSPRYYQLQAINKTIEAIARRQN-------RILLVMATGTGKTY-TAFQIIWRLWKA 214 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 R I+ +A+ +N L + + E Sbjct: 215 REKKRILFLAD-----RNILVDQTRV------------NDFQPFGTAMTKIEGRTVDPAF 257 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224 + T EE F + DE + + N Sbjct: 258 EIHLGLYQALTGPEEHQKAFKQVAPDFFDLIVIDECHRGSAAEDSAWREILEYFNSATQV 317 Query: 225 IMTSNTRRLN 234 +T+ + + Sbjct: 318 GLTATPKETD 327 >gi|261855436|ref|YP_003262719.1| CRISPR-associated helicase Cas3 [Halothiobacillus neapolitanus c2] gi|261835905|gb|ACX95672.1| CRISPR-associated helicase Cas3 [Halothiobacillus neapolitanus c2] Length = 753 Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 26/189 (13%), Positives = 43/189 (22%), Gaps = 8/189 (4%) Query: 68 SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127 ++ P +F + G GKT + L II + T + Sbjct: 248 REKSHEPPGLFSLTV--PTGGGKTLSSMAFALEHAKRNNKRRIIYVIP-YTSIIEQTADI 304 Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ-SMGIDSKHYTITCRTYSEERPDTFVG 186 H + + + E I + + Sbjct: 305 FRDIFGEAVIEHHSNAEVDANKENSRSRLACENWDASIVVTTNVQFFESLFAAKTSRCRK 364 Query: 187 PHNTHGMAVFNDEASGTPDIINKSI---LGFFTELNPNRFWIMTSN-TRRLNGWFYDIFN 242 HN V DEA P + I L T + T+ ++D N Sbjct: 365 LHNIVDSVVVMDEAQLIPAEFLQPILDVLNLLTLHYGVTVVLSTATQPALATREYFDAKN 424 Query: 243 IPLEDWKRY 251 Sbjct: 425 NMRGLENVR 433 >gi|149371676|ref|ZP_01891092.1| RNA helicase [unidentified eubacterium SCB49] gi|149355303|gb|EDM43863.1| RNA helicase [unidentified eubacterium SCB49] Length = 419 Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 18/159 (11%), Positives = 40/159 (25%), Gaps = 27/159 (16%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 ++ P Q + + + SA G GKT + ML +I+ +P Sbjct: 20 GYTTPSPIQAKAIPKILEGKD------------VLASAQTGTGKTAGFSLPMLHIITKQP 67 Query: 107 -----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161 + + + + L E+ + + + Q Sbjct: 68 FQRHRPVKALIVTPTRELAAQIL-KEIKDYSA---------FTDVRSTVIFGGVNANPQI 117 Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + + + + + DEA Sbjct: 118 RALKQGTDILVATPGRLLDLHSQGVFNMKKVEFLVLDEA 156 >gi|149237833|ref|XP_001524793.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] gi|152112298|sp|A5E2I8|SPB4_LODEL RecName: Full=ATP-dependent rRNA helicase SPB4 gi|146451390|gb|EDK45646.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] Length = 637 Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 28/208 (13%), Positives = 57/208 (27%), Gaps = 26/208 (12%) Query: 52 HRWQLEFMEAV----DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107 W + + ++ ++ + A G GKT A +L +S R Sbjct: 18 EPWLKDAIRSLNYPTMTPVQASTIPLLSGNKDVIVEAVTGSGKTLAFAIPVLQKVSKRLY 77 Query: 108 MS----------------IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151 I +A + K K L +LP +E + + Sbjct: 78 QVPEGEEKPEPVKRGHMLAIVMAPTRELAKQI-QMVFDKVLELLPEEDSYEPRIKTQLLV 136 Query: 152 GWYAELLEQSMGI-DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS 210 G+ + E +++ + + + V DEA D+ ++ Sbjct: 137 GFLGNVREDLDSYQENRPQILIATPGRLLDFMSLQIVKTSSLEIVILDEADKLLDMSFET 196 Query: 211 ----ILGFFTELNPNRFWIMTSNTRRLN 234 IL + + T + Sbjct: 197 DVIKILKMLPKQRRTGLFSATISAAGDT 224 >gi|297581650|ref|ZP_06943572.1| type III restriction enzyme [Vibrio cholerae RC385] gi|297534057|gb|EFH72896.1| type III restriction enzyme [Vibrio cholerae RC385] Length = 1005 Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 26/185 (14%), Positives = 54/185 (29%), Gaps = 28/185 (15%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P Q + +E + V F+ + A G GKT ++A+ I +P + Sbjct: 320 PFPHQSDILEQLA------VERCVHQRFRNLVVAATGTGKTLISAFDFARFIKAKPQANF 373 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + +A+ E E+ K L G E + Sbjct: 374 LFVAHRE---------EILKQARAAYRGVLRNGAFGELWVGGHTPE----------HYRQ 414 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 + + + + + + DE +++ +P +T+ Sbjct: 415 LFVSIQTLNNQLSQLNLTTDYYDYIVIDEVHHIAAASYRAV---LEHFSPAILLGLTATP 471 Query: 231 RRLNG 235 R +G Sbjct: 472 ERHDG 476 >gi|116513197|ref|YP_812104.1| hypothetical protein LACR_2573 [Lactococcus lactis subsp. cremoris SK11] gi|116108851|gb|ABJ73991.1| hypothetical protein LACR_2573 [Lactococcus lactis subsp. cremoris SK11] Length = 906 Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 46/161 (28%), Gaps = 16/161 (9%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q E + + +F A G GKT L A ++L+L + + Sbjct: 49 RYYQDEAVRNYHYTQTRIKPSPQHVLFNMA----TGSGKTDLMAGLILYLYQEYDYKNFL 104 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 N+ + L ++ ++ F+ + E+ I Sbjct: 105 FTVNTNS----VLMKTKDNLVNQNSDKYLFQDKIEIDGRQISILEVERFPRVQQDNTIYI 160 Query: 172 TCRTYSEERPDTFVGPHN--------THGMAVFNDEASGTP 204 + + D FV N + V DEA Sbjct: 161 KLSSVQKVSDDLFVVKENAMGLADYERQPVVVLADEAHHYS 201 >gi|94314203|ref|YP_587412.1| 23S rRNA ATP-dependent RNA helicase [Cupriavidus metallidurans CH34] gi|93358055|gb|ABF12143.1| ATP-dependent RNA helicase, specific for 23S rRNA [Cupriavidus metallidurans CH34] Length = 467 Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 18/182 (9%), Positives = 38/182 (20%), Gaps = 10/182 (5%) Query: 87 GIGKTTLNAWMMLWLISTRP-GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 G GKT A +L + RP + + + + + + Sbjct: 54 GSGKTAAFALSLLHRLDPRPLDVQALVLCPTRELADQVTQEIRRLARAEDNVKVLTLSGG 113 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 + P + + + + DEA D Sbjct: 114 TPIRPQVESLVH---------GAHVVVGTPGRIIDHLDRGSLNIDAINTLVLDEADRMLD 164 Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265 + + F P + + + + I F Sbjct: 165 MGFHDDIAFIASHAPKDRQTLLFSATYPAAIDKLAHRFLRQPKTVKVEEAHDAATITQRF 224 Query: 266 HE 267 +E Sbjct: 225 YE 226 >gi|322834137|ref|YP_004214164.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602] gi|321169338|gb|ADW75037.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602] Length = 442 Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 23/190 (12%), Positives = 45/190 (23%), Gaps = 27/190 (14%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 +S+P Q E + SA G GKT L + P Sbjct: 23 GYSRPTVIQAEAI------------PPAMDGRDVLGSAPTGTGKTAAFLLPALQHLLDFP 70 Query: 107 -----GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161 I+ + + AE ++ L+ + + + Q Sbjct: 71 RKKSGPPRILILTPTRELAMQV--AEQARELAKHTELDIATITGGVAYMNHAEVFSENQD 128 Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221 + + T + + DEA D+ + + Sbjct: 129 I--------VVATTGRLLQYIKEENFDCRAIETLILDEADRMLDMGFAQDIETISAEARW 180 Query: 222 RFWIMTSNTR 231 R + + Sbjct: 181 RKQTLLFSAT 190 >gi|237807952|ref|YP_002892392.1| type I site-specific deoxyribonuclease, HsdR family [Tolumonas auensis DSM 9187] gi|237500213|gb|ACQ92806.1| type I site-specific deoxyribonuclease, HsdR family [Tolumonas auensis DSM 9187] Length = 1030 Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 12/118 (10%), Positives = 34/118 (28%), Gaps = 2/118 (1%) Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICI--ANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 +G GK+ W+ W+ ++ + + ++ V + + Sbjct: 278 QGSGKSLTMVWLAKWIRENVKDSRVLIVTDRTELDEQIEKVFFGVDEEIYRTKSGADLIA 337 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + +P + + + +S +E + + +F DE Sbjct: 338 TLNTANPWLICSLVHKFGRQSESDDEGAADEFIAELKKSLPKDFRAKGDLFIFVDECH 395 >gi|159125465|gb|EDP50582.1| DNA replication helicase Dna2, putative [Aspergillus fumigatus A1163] Length = 1657 Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 35/120 (29%), Gaps = 7/120 (5%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM--Q 144 G GKTT A ++ G S++ + + T + N L +L ++ + Sbjct: 1162 GTGKTTTIAHII--RALVAQGKSVLLTSYTHTAVDNILLKIRDDNFRILRIGATAKVHTE 1219 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + + + + T + F DEAS Sbjct: 1220 VQQFVDLAAVPKSTVEELKASYEESQVVATTCLGVNHNIFNR---RVFDYCIVDEASQIT 1276 >gi|146323861|ref|XP_751610.2| DNA replication helicase Dna2 [Aspergillus fumigatus Af293] gi|129557499|gb|EAL89572.2| DNA replication helicase Dna2, putative [Aspergillus fumigatus Af293] Length = 1657 Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 35/120 (29%), Gaps = 7/120 (5%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM--Q 144 G GKTT A ++ G S++ + + T + N L +L ++ + Sbjct: 1162 GTGKTTTIAHII--RALVAQGKSVLLTSYTHTAVDNILLKIRDDNFRILRIGATAKVHTE 1219 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + + + + T + F DEAS Sbjct: 1220 VQQFVDLAAVPKSTVEELKASYEESQVVATTCLGVNHNIFNR---RVFDYCIVDEASQIT 1276 >gi|326430023|gb|EGD75593.1| snf family helicase [Salpingoeca sp. ATCC 50818] Length = 3098 Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 27/246 (10%), Positives = 55/246 (22%), Gaps = 31/246 (12%) Query: 87 GIGKTTLNAWMMLWLISTR----PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 G+GKT ++ L TR P + ++ + + E+ KW P Sbjct: 1083 GLGKTIQTIALLAHLAVTRNNWGPHLIVVPTS-----VMVNWEMELKKW---CPAFKVLN 1134 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 + C T + + DEA Sbjct: 1135 YHGTIKERREKRVGWTKPD-------QFHVCITSYKLAVQDAHIFKRKKWKYLILDEAHH 1187 Query: 203 TPDIINKSILGFFTELNPNRFWIMTSNT--RRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 + R ++T L + + + ++ +Q Sbjct: 1188 IKN-FESKRWQTLLRFTSRRRLLLTGTPLQNDLMELWSLLHFLMPRVFQSHQQFREWFGN 1246 Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIM 320 E + D + + P E ++ Sbjct: 1247 PVREMVESTRAAKQRDK---------ERVSRLHKLLRPFILRRLKADVELQMPKKYEHVI 1297 Query: 321 GCDIAG 326 CD++ Sbjct: 1298 TCDLSR 1303 >gi|292653988|ref|YP_003533886.1| DNA repair helicase Rad25 [Haloferax volcanii DS2] gi|291369858|gb|ADE02086.1| DNA repair helicase Rad25 [Haloferax volcanii DS2] Length = 466 Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 27/251 (10%), Positives = 61/251 (24%), Gaps = 44/251 (17%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 +P +Q ++A H ++ G GKT L Sbjct: 75 LDLTPALHIEPRDYQQAALDAWTNHNRRG-----------SVVLPTGSGKTFL------- 116 Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 G+ I A + +++W + L + + +L E Sbjct: 117 ------GLQAIADAGVGALVVTPTIDLMNQWHATLTN--------------AFGDQLPEP 156 Query: 161 SMGIDSKHYTITCRTYSE-ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219 + + +T T + + +V + + DE P + I Sbjct: 157 IGVLGGGSHDVTAITVTTYDSAYRYVNEYGDQFGLLVVDEEHHLPPPTYRQIPEMTIAPY 216 Query: 220 PNRFWIMTSNTRRLNGWFYD-----IFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYG 274 + D ++ ++D + + Y Sbjct: 217 RLGLTATYERPDGKHELLEDLLGPVVYREHVDDLAGEYLSEYETIHMSVDLTADERETYD 276 Query: 275 LDSDVARIEIL 285 + + R + Sbjct: 277 EEYKLYRDYVD 287 >gi|260556279|ref|ZP_05828498.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter baumannii ATCC 19606] gi|260410334|gb|EEX03633.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter baumannii ATCC 19606] Length = 583 Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 20/160 (12%), Positives = 39/160 (24%), Gaps = 16/160 (10%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 E ++ + I+ G G GKT A ++ L P + + A Sbjct: 118 EEHLDLLTDPHQQAALQMVTRQSLSIITGGPGTGKTYTLARIIAVLSQAIPHIRVAMAAP 177 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 + + +Q+ P + L+ + S Sbjct: 178 TGKAAQRM----------------QEALQNSFNDPKLLESGLMSDELRNQSTQTIHRLLG 221 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 + F + DEAS + + Sbjct: 222 MGHSQTPRFNQKQPLPYDVIVVDEASMLDLNLATVLFEAV 261 >gi|209527839|ref|ZP_03276330.1| PhoH family protein [Arthrospira maxima CS-328] gi|209491749|gb|EDZ92113.1| PhoH family protein [Arthrospira maxima CS-328] Length = 317 Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 26/185 (14%), Positives = 48/185 (25%), Gaps = 25/185 (13%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS--------AGRGIGKTTLNAWMMLWLIS 103 Q + + + AI G GKT L A + L + Sbjct: 94 RELQQDVLARTRRGQDIRAKTFRQRQYIQAIRTHDLTFCIGPAGTGKTYLAAIIALQALL 153 Query: 104 TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163 + +I + + L Q ++ + Y + + Sbjct: 154 SDQYERLILTRPA------------VEAGERLGFLPGDLQQKVNPYLRPLYDAIY--ELV 199 Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223 K + R E P ++ + + DEA T K + T L Sbjct: 200 DPEKAANLMERGVIEVAPIAYMRGRTLNNSFIILDEAQNTTPGQMKMV---LTRLGSRSR 256 Query: 224 WIMTS 228 ++T Sbjct: 257 MVVTG 261 >gi|300708923|ref|XP_002996632.1| hypothetical protein NCER_100260 [Nosema ceranae BRL01] gi|239605948|gb|EEQ82961.1| hypothetical protein NCER_100260 [Nosema ceranae BRL01] Length = 490 Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 37/136 (27%), Gaps = 6/136 (4%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE---TQLKNTLWAEVSKWLSMLP 136 A G GKT ++ I P + I Q+K+ K Sbjct: 65 LICKAPTGSGKTLCYIIPVIQKILKNPNSKAVIICPVRELCDQIKSVCLELTKKLFVNKK 124 Query: 137 HRH---WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + + ++ ++ + S +Q + S I + + Sbjct: 125 NENCDLYYNPKTANQPISVMTIRSDKQELVDYSDANIIIATPGRLIFNLEKKFINFDNLD 184 Query: 194 AVFNDEASGTPDIINK 209 + DEA D K Sbjct: 185 TIVFDEADKLYDSTFK 200 >gi|206603906|gb|EDZ40386.1| Exodeoxyribonuclease V, alpha subunit [Leptospirillum sp. Group II '5-way CG'] Length = 575 Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 71/265 (26%), Gaps = 27/265 (10%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFK--CAISAGRGIGKTTLNAWMMLWLIST 104 +P E + +F+ ++ G G GKT +A ++ Sbjct: 140 GAREPDARDQEILRLASGGVEDRRRLLEGALFRPFFLLTGGPGTGKTYTSAEILKVWKIL 199 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 RP ++ + + + E + + S L Q + + Sbjct: 200 RPEAHLVVATPTGKAARR--FREALSLPEVDVLTLHRLLGISPGGASPGEDRPLVQDLVL 257 Query: 165 DSKHYTIT----CRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELN 219 + + R + P+T V D+ S P + + + Sbjct: 258 VDECSMVDLSLMARLFRALSPETSVILVGDP------DQLSSVGPGSVFGDLALAMSVEQ 311 Query: 220 PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279 R I S + N + W + V D+G I++ + Sbjct: 312 KTRPEISRS-------FQVLTRNYRQDSWDDFGRLAEGVRQGDAGTVLEILASGEKSGPI 364 Query: 280 ARIEILGQFPQQEVNNFIPHNYIEE 304 IE P+ I IE Sbjct: 365 RWIE-----PRTGAIREIGKTLIEA 384 >gi|124514960|gb|EAY56471.1| Exodeoxyribonuclease V, alpha subunit [Leptospirillum rubarum] Length = 575 Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 71/265 (26%), Gaps = 27/265 (10%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFK--CAISAGRGIGKTTLNAWMMLWLIST 104 +P E + +F+ ++ G G GKT +A ++ Sbjct: 140 GAREPDARDQEILRLASGGVEDRRRLLEGALFRPFFLLTGGPGTGKTYTSAEILKVWKIL 199 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 RP ++ + + + E + + S L Q + + Sbjct: 200 RPEAHLVVATPTGKAARR--FREALSLPEVDVLTLHRLLGISPGGASPGEDRPLVQDLVL 257 Query: 165 DSKHYTIT----CRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELN 219 + + R + P+T V D+ S P + + + Sbjct: 258 VDECSMVDLSLMARLFRALSPETSVILVGDP------DQLSSVGPGSVFGDLALAMSVEQ 311 Query: 220 PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279 R I S + N + W + V D+G I++ + Sbjct: 312 KTRPEISRS-------FQVLTRNYRQDSWDDFGRLAEGVRQGDAGTVLEILASGEKSGPI 364 Query: 280 ARIEILGQFPQQEVNNFIPHNYIEE 304 IE P+ I IE Sbjct: 365 RWIE-----PRTGAIREIGKTLIEA 384 >gi|73953279|ref|XP_546133.2| PREDICTED: similar to DNA2-like homolog (DNA replication helicase-like homolog) [Canis familiaris] Length = 1046 Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 25/198 (12%), Positives = 56/198 (28%), Gaps = 22/198 (11%) Query: 13 QELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNN 72 Q+L ++++ F +++ P+ K ++ Q + M+ V Sbjct: 589 QKLRDLIIDFREP-QFISYLSSVLPYDAKDTVACILKGLNKPQRQAMKKV---------- 637 Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 + + G GKTT ++ L + G S++ + + + + N L + Sbjct: 638 LLSKDYTLIVGMP-GTGKTTTICTLVRILYTC--GFSVLLTSYTHSAVDNILLKLAKFKI 694 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQS-----MGIDSKHYTITCRTYSEERPDTFVGP 187 L ++ + + + + I T Sbjct: 695 GFLRLGRTQKVHQDIQKFTEEEICRSKPIKSLALLEELYNSHRIVATTCMGINHP---IF 751 Query: 188 HNTHGMAVFNDEASGTPD 205 DEAS Sbjct: 752 SRKTFDFCIVDEASQISQ 769 >gi|307591364|ref|YP_003900163.1| type III restriction protein res subunit [Cyanothece sp. PCC 7822] gi|306986218|gb|ADN18097.1| type III restriction protein res subunit [Cyanothece sp. PCC 7822] Length = 507 Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 57/177 (32%), Gaps = 18/177 (10%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q + +E H ++ + I AG G GKT + + ++ +S G +I Sbjct: 4 RPYQTKVIEE--THFKRKISQ------RILIIAGTGAGKTVIGSRLISDFVSL--GQKVI 53 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + + ++ L + K L + + S + S Q++ K + Sbjct: 54 FLVH-----RDILIKQTLKKLEGINLPYGIIAGSYPENLSQQVQIASIQTLSRRGKQWLQ 108 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 ++ F H T+ + P N++I+G Sbjct: 109 AEFPFTVAI---FDESHLTNWFNFSLELCPKLPKKNNQTIIGLTATPWRRLKSQSMG 162 >gi|322419455|ref|YP_004198678.1| PhoH family protein [Geobacter sp. M18] gi|320125842|gb|ADW13402.1| PhoH family protein [Geobacter sp. M18] Length = 439 Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 22/154 (14%), Positives = 44/154 (28%), Gaps = 10/154 (6%) Query: 87 GIGKTTLN-AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 G GKT L A + ++ ++ L L W + Sbjct: 255 GTGKTLLAIAAGLQKTAEENVYNRLLVSRPVFPMGRD-LGFLPGDIEEKL--SPWMQPIF 311 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 ++ E + + + E P T++ + + DEA Sbjct: 312 DNVELLLSGHEGEK---RHSKGYKELMAMGILEIEPLTYIRGRSIPNQYMIVDEAQNLTP 368 Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYD 239 K+I T I+T + +++ + D Sbjct: 369 HEIKTI---VTRAGEGTKIILTGDPYQIDNPYVD 399 >gi|225626370|ref|YP_002727866.1| terminase large subunit [Pseudomonas phage phikF77] gi|225594879|emb|CAX63164.1| terminase large subunit [Pseudomonas phage phikF77] Length = 601 Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 30/260 (11%), Positives = 71/260 (27%), Gaps = 28/260 (10%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + + N K ++A RG K+T+ ++W I+ P + ++ S + Sbjct: 41 DIADFMQDSPN-------KAMVAAQRGEAKSTIACIYVVWCIAQNPATRAMLVSGSGDKA 93 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLS-LHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 + L + L+ L P + + + ++ S Sbjct: 94 EEN---------GQLITKLIMHWDLLAYLRPEARMGDRTSATSFDVNWALKGVEKSASIN 144 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT-------SNTRR 232 + D+ T + + + T + I T + Sbjct: 145 CIGITAALQGYRADILIPDDIETTKNGLTATERAKLTRQSQEFTSICTHGKILYLGTPQS 204 Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292 + +P + R + + ++ +D +AR+E G P+ Sbjct: 205 RESIYN---GLPARGFLMRIWPGRFPTLDEQKRYGEWLAPSIVD-RIARLEEKGHNPRTG 260 Query: 293 VNNFIPHNYIEEAMSREAID 312 + + D Sbjct: 261 KGLDGTRGWAADPQRYNEED 280 >gi|257440685|ref|ZP_05616440.1| conserved hypothetical protein [Faecalibacterium prausnitzii A2-165] gi|257196858|gb|EEU95142.1| conserved hypothetical protein [Faecalibacterium prausnitzii A2-165] Length = 721 Score = 39.2 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 36/151 (23%), Gaps = 19/151 (12%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSE------TQLKNTLWAEVS----KWLSMLP 136 G GKT + A +L + P I N+ QL NT + E + W ++ Sbjct: 215 GSGKTVVLALKAAYLHAQHPEWKIAVTFNTRSLKGQLRQLINTFYIEQTSEEPDWDNLHI 274 Query: 137 HRHWFEMQSLSLHPSGWY-------AELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189 W + L S + + Sbjct: 275 LHAWGAPGGGERTGMYYIFCGTNNLEYLDFLSAKNRFGSTDPFGVACRKALEEATDP--R 332 Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNP 220 AV DEA K E Sbjct: 333 PMYDAVLVDEAQDFSPAFLKLCYEMLREPKR 363 >gi|293610156|ref|ZP_06692457.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827388|gb|EFF85752.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 587 Score = 39.2 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 18/148 (12%), Positives = 38/148 (25%), Gaps = 16/148 (10%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 ++++ + I+ G G GKT A ++ L P + + A + Sbjct: 123 DYLDLLTDPHQQAALQMVARQSLSIITGGPGTGKTYTLARIIAVLSQAIPHIRVAMAAPT 182 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 + +Q+ P + L+ + + Sbjct: 183 GKAAQRM----------------QEALQNSFNDPKLLESGLVSEELRNQGTQTIHRLLGM 226 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTP 204 + F + DEAS Sbjct: 227 GHSQTPRFNQKQPLPYDVIVVDEASMLD 254 >gi|210076288|ref|XP_504727.2| YALI0E33377p [Yarrowia lipolytica] gi|199426994|emb|CAG80331.2| YALI0E33377p [Yarrowia lipolytica] Length = 1390 Score = 39.2 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 35/123 (28%), Gaps = 9/123 (7%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTT A +++ L+ G +++ + + + + N L + + Sbjct: 958 GTGKTTTIAEIIMELVKN--GKTVLLSSFTHSAVDNILLKLM--QHPSCNFDMLRLGSTS 1013 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT-----FVGPHNTHGMAVFNDEAS 201 +HP +++ T H DEAS Sbjct: 1014 KIHPEVAEHYAANNRRNYETREEFEKLFLAPPVVGATALGIGDWVLQERHFDYCIVDEAS 1073 Query: 202 GTP 204 Sbjct: 1074 QIT 1076 >gi|327394548|dbj|BAK11970.1| ABC transporter ATP-binding protein YojI [Pantoea ananatis AJ13355] Length = 550 Score = 39.2 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 28/203 (13%), Positives = 52/203 (25%), Gaps = 19/203 (9%) Query: 40 IKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA------ISAGRGIGKTTL 93 P F+ WQ + V H N P + + G G GK+TL Sbjct: 308 EPDFPT--FNGETDWQTLELRDVTFHYGDNGFQVGPVNLRLQRGELVFLIGGNGSGKSTL 365 Query: 94 NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ----SLSLH 149 A ++ L + G +I + + S + + + Sbjct: 366 -AMLLTGLYRPQSGSLLIDGKPVDMGDLDRWRKHFSAVFTDVHLFDRLIDSKGDPASPAR 424 Query: 150 PSGWYAELLEQSMGIDSKHYTITCRTYSEER-PDTFVGPHNTHGMAVFNDEASGTPDIIN 208 W +L Q + + + + + + DE + D Sbjct: 425 IQQWLEKLKMQDKLKIEGNKILNLQLSKGQSKRLALLLAVAEQRDVLLLDEWAADQDPHF 484 Query: 209 -----KSILGFFTELNPNRFWIM 226 + +L F I Sbjct: 485 RRVFYRELLPALQAAGKTVFAIS 507 >gi|301605926|ref|XP_002932581.1| PREDICTED: u5 small nuclear ribonucleoprotein 200 kDa helicase [Xenopus (Silurana) tropicalis] Length = 2140 Score = 39.2 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 14/134 (10%), Positives = 28/134 (20%), Gaps = 10/134 (7%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + A G GKT + +L ++ + I E + K+ L + Sbjct: 1344 NVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITPMEALAEQVFMDWFEKFQDRLYKK 1403 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 S + T + + + D Sbjct: 1404 VVLLTGETSTDLK----------LLGKGNIIISTPEKWDILSRRWKQRKNVQNVSLFIVD 1453 Query: 199 EASGTPDIINKSIL 212 E + Sbjct: 1454 ETHLIGGANGPVLE 1467 >gi|255021847|ref|ZP_05293857.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus caldus ATCC 51756] gi|254968671|gb|EET26223.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus caldus ATCC 51756] Length = 429 Score = 39.2 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 19/181 (10%), Positives = 43/181 (23%), Gaps = 20/181 (11%) Query: 60 EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP------GMSIICI 113 + +A G GKT A +L ++ P + + + Sbjct: 38 YEQATPIQARAIPEILKGHDILAAAQTGTGKTAAFALPILHRLARDPVSSGPRPVRALIL 97 Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173 + + + +P R + + + P + + + Sbjct: 98 VPTRELAAQV-EDNIRLYRGQMPVRSLMLIGGVKIGPQME---------QLRNGADIVVA 147 Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN----KSILGFFTELNPNRFWIMTSN 229 + DEA D+ + I+G N + T + Sbjct: 148 TPGRLLDHLQQRSLRLDRVETLVLDEADRMLDMGFIRDIRRIIGMLPAKRQNLLFSATFS 207 Query: 230 T 230 Sbjct: 208 P 208 >gi|302548755|ref|ZP_07301097.1| putative terminase, large subunit [Streptomyces hygroscopicus ATCC 53653] gi|302466373|gb|EFL29466.1| putative terminase, large subunit [Streptomyces himastatinicus ATCC 53653] Length = 528 Score = 39.2 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 28/304 (9%), Positives = 64/304 (21%), Gaps = 39/304 (12%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM-LWLISTRPGMSI 110 Q ++ +D + ++ GK+ + LW + P + Sbjct: 71 REIQAPHLDLIDQAFRRIA---AGERLQVMLTMPPRHGKSQRASRWGPLWYLRRHPTRRV 127 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + + + +W+ + +L + + + Sbjct: 128 MIASYGADLADDH-----GRWIRDQLKEY---SDTLGIRLNPASHAANRFDLEQPRGSSV 179 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEA------SGTP---DIINKSILGFFTELNPN 221 G D+ SG+P D + F Sbjct: 180 RGGMVT----AGVGGGLTGKGFDLGIIDDPFKGNDDSGSPAQRDRVYDWYRSVFYTRRAP 235 Query: 222 RFWIMTSNTR-RLNGWFYDIFNIPLEDWKRYQIDT-RTVE------------GIDSGFHE 267 I+ NTR + + W + + Sbjct: 236 GASIILINTRWHEDDLSGRLLQSEPHRWIQIDLPAIADSPDDPLGRHIGQALWPSQYDEA 295 Query: 268 GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGE 327 + + + Q P+ +I + P + + Sbjct: 296 DLADTRETLGERIWYAMYQQKPRPLEGGVWQWAWISGNRLKPEAWPGIDPTRVVVAVDHA 355 Query: 328 GGDK 331 GGD Sbjct: 356 GGDS 359 >gi|319760754|ref|YP_004124691.1| helicase c2 [Alicycliphilus denitrificans BC] gi|330822674|ref|YP_004385977.1| DEAD_2 domain-containing protein [Alicycliphilus denitrificans K601] gi|317115315|gb|ADU97803.1| helicase c2 [Alicycliphilus denitrificans BC] gi|329308046|gb|AEB82461.1| DEAD_2 domain protein [Alicycliphilus denitrificans K601] Length = 724 Score = 39.2 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 19/181 (10%), Positives = 40/181 (22%), Gaps = 9/181 (4%) Query: 52 HRWQLEFMEAVD---VHCHSNVNNSNPTIFKCAIS---AGRGIGKTTLNAWMMLWLISTR 105 Q E V + + AI+ AG G+GK+ + + + R Sbjct: 27 REGQRRMAEQVAQTFAQAQLGKLEDEDSQPRRAIAVVQAGTGVGKSLAYSVPAIAMALAR 86 Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 G ++ + + + ++ + + F + Sbjct: 87 -GTRVLISTATVALQEQLVHKDLPALAARMEQPFQFALAKGRGRYVCKLKLERLAGGAAG 145 Query: 166 SKHYTITCRTYSEERPDTFVGPH--NTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223 + + EE P M + A Sbjct: 146 GEDGVPDDDLFPEEAAAQRQRPRHDAEARMRFYASMADALATGGWDGDRDTLDSPPEPEA 205 Query: 224 W 224 W Sbjct: 206 W 206 >gi|237740709|ref|ZP_04571190.1| ATP-dependent helicase [Fusobacterium sp. 2_1_31] gi|229422726|gb|EEO37773.1| ATP-dependent helicase [Fusobacterium sp. 2_1_31] Length = 822 Score = 39.2 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 42/146 (28%), Gaps = 12/146 (8%) Query: 34 RFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTL 93 F GI ++ F H Q E + + + N K + AG G GKT Sbjct: 127 YFSEDGILVNEIKGFEHRHE-QEEMAKNIQNAINDN--------RKIIVEAGTGTGKTLA 177 Query: 94 NAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGW 153 + T +I N+ + L ++ L+ + F + + Sbjct: 178 YLIPAIKWAITNK-KKVIIATNTINLQEQLLLKDIP--LAKSVIKDEFTYALVKGRSNYL 234 Query: 154 YAELLEQSMGIDSKHYTITCRTYSEE 179 L + S E+ Sbjct: 235 CKRLFTELSLGKSIDIESFSVEAREQ 260 >gi|39977783|ref|XP_370279.1| hypothetical protein MGG_06776 [Magnaporthe oryzae 70-15] gi|206558153|sp|A4R227|INO80_MAGO7 RecName: Full=Putative DNA helicase INO80 gi|145013701|gb|EDJ98342.1| hypothetical protein MGG_06776 [Magnaporthe oryzae 70-15] Length = 1944 Score = 39.2 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 30/257 (11%), Positives = 65/257 (25%), Gaps = 26/257 (10%) Query: 32 VMRFFPWGIKGKPLEHFSQPH----RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRG 87 + P G+ +E +QL+ + + +N G Sbjct: 1055 MNFQNPTGLGDVEIEQPKLLTATLKEYQLKGLNWLVNLYEQGINGILADEM--------G 1106 Query: 88 IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147 +GKT + +M +L + + L N E+ +++ L ++ S Sbjct: 1107 LGKTIQSISVMAYLAEHHDIWGPFLVVAPASTLHN-WEQEIKRFVPDLKIVPYWGSASDR 1165 Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207 + + T + + DEA Sbjct: 1166 KILRKF---WDRKHSTYKRDAQFHVAITSYQMVVSDVAYFQKMKWQYMILDEAQAIKSSQ 1222 Query: 208 NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI---------FNIPLEDWKRYQIDTRTV 258 S + ++T + N F+ E + D + Sbjct: 1223 -SSRWKCLLSFHCRNRLLLTGTPIQNNMQELWALLHFIMPSLFDSHEEFSDWFSKDIESH 1281 Query: 259 EGIDSGFHEGIISRYGL 275 +S +E + R + Sbjct: 1282 AQSNSKLNEDQLKRLHM 1298 >gi|220903520|ref|YP_002478832.1| hypothetical protein Ddes_0239 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867819|gb|ACL48154.1| protein of unknown function DUF264 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 615 Score = 39.2 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 35/309 (11%), Positives = 68/309 (22%), Gaps = 35/309 (11%) Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ------L 120 ++ + + + A R +G T A I A + Sbjct: 178 QREISATKEHRNRMFLKA-RQLGFTWFFAQEAFEDAVLNGDNQIFLSATRAQSEIFLHYI 236 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEE- 179 ++ L P +L+ + + G + E Sbjct: 237 RDICGEAFDIELKGNPLVLHTAKGPATLYFLATSSRSAQGYHGHVYGDEFFWMPKFKEFW 296 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIINK--SILGFFTELNPNRFWIMTSNTRRLNGWF 237 + + + H + S S + + W + Sbjct: 297 KVASGMAAHAKWRRTM-FSTPSIITHEAYPRWSGKEYLSRFKNPAPW-----PDKAA--L 348 Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297 P ++R + E + R +F + Sbjct: 349 RQGLICPDNTYRRI-VTLDDAEAGGCNLFNRADLEQEYSPEDMRQLFGCEFID-DTLAVF 406 Query: 298 PHNYIEEAMS---------REAIDDLYAPLIMGCDIAGEGGDKTVVVFRR----GNIIE- 343 +E M R+A A + G D + D + VV G+ I Sbjct: 407 LLGLLEGCMEDPDGWGIDLRQARPVDNAGVWGGYDPSRTRDDASFVVLLPPQKAGDKIRT 466 Query: 344 -HIFDWSAK 351 W K Sbjct: 467 LERHTWKGK 475 >gi|119586186|gb|EAW65782.1| Fanconi anemia, complementation group M, isoform CRA_b [Homo sapiens] Length = 2083 Score = 39.2 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 25/250 (10%), Positives = 66/250 (26%), Gaps = 19/250 (7%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + G+GKT + A +M P ++ +A ++ + ++ ++ Sbjct: 105 CNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQ----QIEACYQVMGI 160 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + + E+ + + P + Sbjct: 161 PQSHMAEMTGSTQASTRKEIWCSKRVLFLTPQVMVNDLSRGACP-------AAEIKCLVI 213 Query: 198 DEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256 DEA + ++ + + + S T + I + ++ + Sbjct: 214 DEAHKALGNYAYCQVVRELVKYTNHFRILALSATP-GSDIKAVQQVITNLLIGQIELRSE 272 Query: 257 TVEGI---DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 I + + A + Q + + I N + M R+ + Sbjct: 273 DSPDILTYSHERKVEKLIVPLGEELAAIQKTYIQILESFARSLIQRNVL---MRRDIPNL 329 Query: 314 LYAPLIMGCD 323 +I+ D Sbjct: 330 TKYQIILARD 339 >gi|119586187|gb|EAW65783.1| Fanconi anemia, complementation group M, isoform CRA_c [Homo sapiens] Length = 1979 Score = 39.2 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 25/250 (10%), Positives = 66/250 (26%), Gaps = 19/250 (7%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + G+GKT + A +M P ++ +A ++ + ++ ++ Sbjct: 105 CNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQ----QIEACYQVMGI 160 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + + E+ + + P + Sbjct: 161 PQSHMAEMTGSTQASTRKEIWCSKRVLFLTPQVMVNDLSRGACP-------AAEIKCLVI 213 Query: 198 DEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256 DEA + ++ + + + S T + I + ++ + Sbjct: 214 DEAHKALGNYAYCQVVRELVKYTNHFRILALSATP-GSDIKAVQQVITNLLIGQIELRSE 272 Query: 257 TVEGI---DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 I + + A + Q + + I N + M R+ + Sbjct: 273 DSPDILTYSHERKVEKLIVPLGEELAAIQKTYIQILESFARSLIQRNVL---MRRDIPNL 329 Query: 314 LYAPLIMGCD 323 +I+ D Sbjct: 330 TKYQIILARD 339 >gi|119500114|ref|XP_001266814.1| DNA replication helicase Dna2, putative [Neosartorya fischeri NRRL 181] gi|119414979|gb|EAW24917.1| DNA replication helicase Dna2, putative [Neosartorya fischeri NRRL 181] Length = 1607 Score = 39.2 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 35/120 (29%), Gaps = 7/120 (5%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM--Q 144 G GKTT A ++ G S++ + + T + N L +L ++ + Sbjct: 1112 GTGKTTTIAHII--RALVAQGKSVLLTSYTHTAVDNILLKIRDDNFRILRIGATAKVHPE 1169 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + + + + T + F DEAS Sbjct: 1170 VQQFVDLAAVPKSTVEELKASYEESQVVATTCLGVNHNIFNR---RIFDYCIVDEASQIT 1226 >gi|111219431|ref|XP_646847.2| DNA2/NAM7 helicase family protein [Dictyostelium discoideum AX4] gi|90970906|gb|EAL72919.2| DNA2/NAM7 helicase family protein [Dictyostelium discoideum AX4] Length = 2314 Score = 39.2 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 20/156 (12%), Positives = 45/156 (28%), Gaps = 16/156 (10%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL------- 132 I G GKTT +++ L++ P I+ S + + K L Sbjct: 1413 TLIQGPPGTGKTTTIYYLLSILLAINPKFKILVCGPSHASVDEVAKRCLKKSLINVDGKP 1472 Query: 133 ---SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189 +M+ + S + ++ I + + + + S Sbjct: 1473 YLPNMVRIGKLQNISPDCHRISPYDKTPAQRKEIIRNANIVFSTLSASGSGSVRSNF--- 1529 Query: 190 THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225 V DE++ + + S++ + Sbjct: 1530 -KANIVLVDESTQSSEP--ASLIPLCIGNIEKLILV 1562 >gi|23273574|gb|AAH36056.1| FANCM protein [Homo sapiens] gi|119586188|gb|EAW65784.1| Fanconi anemia, complementation group M, isoform CRA_d [Homo sapiens] gi|325463111|gb|ADZ15326.1| Fanconi anemia, complementation group M [synthetic construct] Length = 669 Score = 39.2 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 25/250 (10%), Positives = 66/250 (26%), Gaps = 19/250 (7%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + G+GKT + A +M P ++ +A ++ + ++ ++ Sbjct: 105 CNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQ----QIEACYQVMGI 160 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + + E+ + + P + Sbjct: 161 PQSHMAEMTGSTQASTRKEIWCSKRVLFLTPQVMVNDLSRGACP-------AAEIKCLVI 213 Query: 198 DEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256 DEA + ++ + + + S T + I + ++ + Sbjct: 214 DEAHKALGNYAYCQVVRELVKYTNHFRILALSATP-GSDIKAVQQVITNLLIGQIELRSE 272 Query: 257 TVEGI---DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 I + + A + Q + + I N + M R+ + Sbjct: 273 DSPDILTYSHERKVEKLIVPLGEELAAIQKTYIQILESFARSLIQRNVL---MRRDIPNL 329 Query: 314 LYAPLIMGCD 323 +I+ D Sbjct: 330 TKYQIILARD 339 >gi|21752288|dbj|BAC04159.1| unnamed protein product [Homo sapiens] Length = 669 Score = 39.2 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 25/250 (10%), Positives = 66/250 (26%), Gaps = 19/250 (7%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + G+GKT + A +M P ++ +A ++ + ++ ++ Sbjct: 105 CNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQ----QIEACYQVMGI 160 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + + E+ + + P + Sbjct: 161 PQSHMAEMTGSTQASTRKEIWCSKRVLFLTPQVMVNDLSRGACP-------AAEIKCLVI 213 Query: 198 DEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256 DEA + ++ + + + S T + I + ++ + Sbjct: 214 DEAHKALGNYAYCQVVRELVKYTNHFRILALSATP-GSDIKAVQQVITNLLIGQIELRSE 272 Query: 257 TVEGI---DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 I + + A + Q + + I N + M R+ + Sbjct: 273 DSPDILTYSHERKVEKLIVPLGEELAAIQKTYIQILESFARSLIQRNVL---MRRDIPNL 329 Query: 314 LYAPLIMGCD 323 +I+ D Sbjct: 330 TKYQIILARD 339 >gi|74959747|ref|NP_065988.1| Fanconi anemia group M protein [Homo sapiens] gi|78099254|sp|Q8IYD8|FANCM_HUMAN RecName: Full=Fanconi anemia group M protein; Short=Protein FACM; AltName: Full=ATP-dependent RNA helicase FANCM; AltName: Full=Fanconi anemia-associated polypeptide of 250 kDa; Short=FAAP250; AltName: Full=Protein Hef ortholog gi|71912519|gb|AAZ53290.1| Fanconi anemia complementation group M [Homo sapiens] gi|119586185|gb|EAW65781.1| Fanconi anemia, complementation group M, isoform CRA_a [Homo sapiens] gi|162319388|gb|AAI56491.1| Fanconi anemia, complementation group M [synthetic construct] Length = 2048 Score = 39.2 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 25/250 (10%), Positives = 66/250 (26%), Gaps = 19/250 (7%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + G+GKT + A +M P ++ +A ++ + ++ ++ Sbjct: 105 CNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQ----QIEACYQVMGI 160 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + + E+ + + P + Sbjct: 161 PQSHMAEMTGSTQASTRKEIWCSKRVLFLTPQVMVNDLSRGACP-------AAEIKCLVI 213 Query: 198 DEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256 DEA + ++ + + + S T + I + ++ + Sbjct: 214 DEAHKALGNYAYCQVVRELVKYTNHFRILALSATP-GSDIKAVQQVITNLLIGQIELRSE 272 Query: 257 TVEGI---DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 I + + A + Q + + I N + M R+ + Sbjct: 273 DSPDILTYSHERKVEKLIVPLGEELAAIQKTYIQILESFARSLIQRNVL---MRRDIPNL 329 Query: 314 LYAPLIMGCD 323 +I+ D Sbjct: 330 TKYQIILARD 339 >gi|320582067|gb|EFW96285.1| hypothetical protein HPODL_1942 [Pichia angusta DL-1] Length = 2061 Score = 39.2 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 18/156 (11%), Positives = 44/156 (28%), Gaps = 8/156 (5%) Query: 20 MHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFK 79 H + F + + + + + W + V + + Sbjct: 1900 NHPQLTYDFLSGFFDTLDYCQEQEQDAYVIYTSPWIKNIFKHVYSADSIKGPRRTSDLIR 1959 Query: 80 CAISAGRGIGKTTLNA-WMMLWLISTRPGMSI------ICIANSETQLKNTLWAEVSKWL 132 + A R K+T A + +W + I A + + + W E++K+ Sbjct: 1960 KFVRASRKS-KSTTLAFALYIWGELCLEDRLVEIVIDEIISAAIDHEAEGHGWEEITKYW 2018 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 + P + L ++ E + + Sbjct: 2019 PLTPTVEICGLLIHRLRERSYFINNDESELDFLKEP 2054 >gi|293611312|ref|ZP_06693609.1| predicted protein [Acinetobacter sp. SH024] gi|292826323|gb|EFF84691.1| predicted protein [Acinetobacter sp. SH024] Length = 1043 Score = 39.2 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 20/151 (13%), Positives = 39/151 (25%), Gaps = 14/151 (9%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 + G GKT A ++ ++ G ++ A LK +P Sbjct: 265 VVVQGPPGTGKTHSIANIICHYLAN--GKKVLVTAQQSHVLKTV--------HEKIPDEL 314 Query: 140 WFEMQSLSLHPSGWYAELL-EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + S +L + + HN H MA+ + Sbjct: 315 KPLVVSRIGSSKESKNQLESSIDLIVQKITQMNVAEVRKTIEVLKHQIDHNHHEMALIDR 374 Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSN 229 E + ++I + N + Sbjct: 375 EIYNFAEKHYQNIE---VDGNKKLPMDIVKT 402 >gi|282858205|ref|ZP_06267396.1| ATP-dependent nuclease subunit A (ATP-dependent helicase addA) [Pyramidobacter piscolens W5455] gi|282583957|gb|EFB89334.1| ATP-dependent nuclease subunit A (ATP-dependent helicase addA) [Pyramidobacter piscolens W5455] Length = 558 Score = 39.2 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 24/219 (10%), Positives = 57/219 (26%), Gaps = 5/219 (2%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 + AG G GKT AW +W + TR + + + + + ++ L+ L Sbjct: 42 TVVGAGAGTGKTWTLAWRFVWTVLTREDVRHMLTLTFTEKAASEMRRRIAALLADLEPAL 101 Query: 140 WFEMQSLSLHPSGWYA-ELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + + + + S I S + + + + Sbjct: 102 AASAELSRRRAAALVSLDQAYISTIHGFGARVIGEAGLSLPVEPSPRLVGDAEASEFWRE 161 Query: 199 EASGTPDIINKSI-LGFFTELNPNRFWIMTSNTRRLNGWF-YDIFNIPLEDWKRYQIDTR 256 A + + G E ++ N + + ++ Sbjct: 162 LAGALDRLDAEWFCWGMDREYGAAARELL--NGDGAADVVNCWGPEGVADFARSFEGMMS 219 Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN 295 E + S ++ R + +F + Sbjct: 220 DFGETPESVLEKLGSPDAQALELLRQNLGAEFARLADCW 258 >gi|169830411|ref|YP_001716393.1| type III restriction enzyme, res subunit [Candidatus Desulforudis audaxviator MP104C] gi|169637255|gb|ACA58761.1| type III restriction enzyme, res subunit [Candidatus Desulforudis audaxviator MP104C] Length = 1021 Score = 39.2 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 27/182 (14%), Positives = 58/182 (31%), Gaps = 24/182 (13%) Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW---LISTRPGMS-------IICI 113 H + N +NP + + A+ G GKTT+ A ++ W +P ++C Sbjct: 154 EHLINANNEANPGLLRLALKLATGAGKTTVMAMLIAWQTINAVRQPNSKRFTRGFLVVCP 213 Query: 114 ANSETQLKNTLWA----EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS-KH 168 + L + ++P+ +++ + + ++A L + M + Sbjct: 214 GLTIRDRLRVLQPNDPDSYYQSRELVPNDMLRDLERAKIVITNYHAFKLRERMELSKGGR 273 Query: 169 YTITCRTYSEERPDTFVG--------PHNTHGMAVFNDEASGT-PDIINKSILGFFTELN 219 + R + +T + V NDEA + G + Sbjct: 274 SLLQGRGAALNTLETEGQMLQRVMPELMGMKNILVLNDEAHHCYREKPKSDAEGELKGDD 333 Query: 220 PN 221 Sbjct: 334 RR 335 >gi|169786937|ref|YP_001708749.1| putative DNA helicase [Acinetobacter baumannii AYE] gi|169147098|emb|CAM84758.1| putative DNA helicase [Acinetobacter baumannii AYE] Length = 1579 Score = 39.2 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 20/151 (13%), Positives = 39/151 (25%), Gaps = 14/151 (9%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 + G GKT A ++ ++ G ++ A LK +P Sbjct: 463 VVVQGPPGTGKTHSIANIICHYLAN--GKKVLVTAQQSHVLKTV--------HEKIPDEL 512 Query: 140 WFEMQSLSLHPSGWYAELL-EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + S +L + + HN H MA+ + Sbjct: 513 KPLVVSRIGSSKESKNQLESSIDLIVQKITQMNVAEVRKTIEVLKHQIDHNHHEMALIDR 572 Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSN 229 E + ++I + N + Sbjct: 573 EIYNFAEKHYQNIE---VDGNKKLPMDIVKT 600 >gi|220918004|ref|YP_002493308.1| PhoH family protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219955858|gb|ACL66242.1| PhoH family protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 359 Score = 39.2 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 27/205 (13%), Positives = 51/205 (24%), Gaps = 23/205 (11%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT L M + + R I+ + + L + + Sbjct: 143 GTGKTYLAMAMAVAYLVERRVKRIVLTRPA------------VEAGERLGFLPGDIAEKV 190 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + + + L M K R E P F+ + + DEA T Sbjct: 191 NPYLRPLHDALF--DMVDYEKATAFIERGTVEVAPLAFMRGRTLNDAFIILDEAQNTTAE 248 Query: 207 INKSILGFFTELNPNRFWIMTSN------TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 K T L ++T + ++ + V+ Sbjct: 249 QMKMF---LTRLGYGSKAVITGDVTQVDLPSGRGSGLVEVQKVLRGVEGVSFCMFSEVDV 305 Query: 261 IDSGFHEGIISRYGLDSDVARIEIL 285 + + ++ Y R Sbjct: 306 VRHPLVQEVVRAYDAFEAERRARTE 330 >gi|197123215|ref|YP_002135166.1| PhoH family protein [Anaeromyxobacter sp. K] gi|196173064|gb|ACG74037.1| PhoH family protein [Anaeromyxobacter sp. K] Length = 359 Score = 39.2 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 27/205 (13%), Positives = 51/205 (24%), Gaps = 23/205 (11%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT L M + + R I+ + + L + + Sbjct: 143 GTGKTYLAMAMAVAYLVERRVKRIVLTRPA------------VEAGERLGFLPGDIAEKV 190 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + + + L M K R E P F+ + + DEA T Sbjct: 191 NPYLRPLHDALF--DMVDYEKATAFIERGTVEVAPLAFMRGRTLNDAFIILDEAQNTTAE 248 Query: 207 INKSILGFFTELNPNRFWIMTSN------TRRLNGWFYDIFNIPLEDWKRYQIDTRTVEG 260 K T L ++T + ++ + V+ Sbjct: 249 QMKMF---LTRLGYGSKAVITGDVTQVDLPSGRGSGLVEVQKVLRGVEGVSFCMFSEVDV 305 Query: 261 IDSGFHEGIISRYGLDSDVARIEIL 285 + + ++ Y R Sbjct: 306 VRHPLVQEVVRAYDAFEAERRARTE 330 >gi|307212510|gb|EFN88241.1| Putative U5 small nuclear ribonucleoprotein 200 kDa helicase [Harpegnathos saltator] Length = 2134 Score = 38.8 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 49/226 (21%), Gaps = 28/226 (12%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 + + F Q + Q + AV + A G GKTT+ + +L Sbjct: 1312 ENIYADRFPQFNPIQTQVFNAVYNSDD-----------NVFVGAPTGSGKTTIAEFAVLR 1360 Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 L++ + + + E + K+ L + Sbjct: 1361 LLTQNSDGRCVYMVSKEALAELVYADWAMKFNQQLGRKVVLLTGETGTDLK--------- 1411 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN- 219 + + T + + + DE + + Sbjct: 1412 -LLAKGQIIITTADKWDVLSRRWKQRKNVQNIQLFIVDELQLIGGEEGPVLEVACSRARY 1470 Query: 220 ------PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 I S + P + R V Sbjct: 1471 ISSQLEKPTRIIALSASLADAKDAAQWLGAPAAATFNFHPSVRPVP 1516 >gi|299771760|ref|YP_003733786.1| exonuclease V, alpha subunit [Acinetobacter sp. DR1] gi|298701848|gb|ADI92413.1| exonuclease V, alpha subunit [Acinetobacter sp. DR1] Length = 583 Score = 38.8 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 19/146 (13%), Positives = 39/146 (26%), Gaps = 16/146 (10%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 ++++ + I+ G G GKT A ++ L T P + + A + Sbjct: 119 DYLDLLTDPHQQAALQMVARQSLSIITGGPGTGKTYTLARIIAVLSQTIPNIRVAMAAPT 178 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 + +Q+ P + L+ + + Sbjct: 179 GKAAQRM----------------QEALQNSFNDPKLLESGLVSEELRNQGTQTIHRLLGM 222 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASG 202 + F + DEAS Sbjct: 223 GHSQTPRFNQKQPLPYDVIVVDEASM 248 >gi|121997226|ref|YP_001002013.1| hypothetical protein Hhal_0422 [Halorhodospira halophila SL1] gi|121588631|gb|ABM61211.1| conserved hypothetical protein [Halorhodospira halophila SL1] Length = 554 Score = 38.8 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 17/217 (7%), Positives = 48/217 (22%), Gaps = 17/217 (7%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + + + V + ++ + G GKT + A R + Sbjct: 200 QEQTFQRLAGGITELVQGLEMSPWRLRVIGAAGSGKT-IAAIEFFEAAQARGERPALVCF 258 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 N L + L F + + + +++ ++++ Sbjct: 259 N------RVLGDRLRARLEGNADVGNFHRLCHAWLEAVGESFDAQRARREPQEYWSEVAD 312 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 E + DE + + + + + W+ Sbjct: 313 RLIEHSE------RLPCFDRLIVDEGQDFSEEWWELLRICLVDDDAPVLWLE----DPQQ 362 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIIS 271 + + F ++ Sbjct: 363 DLYGRNDQQQSAFVTYRTGKAFRTPRRIAQFVRRLLE 399 >gi|319776569|ref|YP_004139057.1| DNA helicase II [Haemophilus influenzae F3047] gi|319897345|ref|YP_004135541.1| DNA helicase ii [Haemophilus influenzae F3031] gi|317432850|emb|CBY81215.1| DNA helicase II [Haemophilus influenzae F3031] gi|317451160|emb|CBY87393.1| DNA helicase II [Haemophilus influenzae F3047] Length = 727 Score = 38.8 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 81/302 (26%), Gaps = 29/302 (9%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIA 114 E ++ ++ V + AG G GKT + + WLI+ SI+ + Sbjct: 6 ELLDGLNDKQREAVAAPLGNH---LVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 62 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 + S H+ + + +G+ + Sbjct: 63 FTNKAAAEMRHRIQSTLAKHAQHQLFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSE 122 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 + HN DE + P + + + Sbjct: 123 -DQLRLIKRLLKLHN-------FDEKAF-PPKQACWYINNKKDEGLR--------PNDIE 165 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294 + ++ ++ YQ +D + + +F V+ Sbjct: 166 DFNDRQEREWIKIYQIYQDTCDRAGLVDFAELLIRVYELFEKKPLILQRYQQRFQHILVD 225 Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354 F N I+ + + +++ D D++ + RG IE+I + Sbjct: 226 EFQDTNKIQYK-WIKILAGKTGKVMIVGD-----DDQS-IYGWRGAQIENIQKFLKDFKA 278 Query: 355 ET 356 ET Sbjct: 279 ET 280 >gi|290473827|ref|YP_003466701.1| DNA helicase IV [Xenorhabdus bovienii SS-2004] gi|289173134|emb|CBJ79907.1| DNA helicase IV [Xenorhabdus bovienii SS-2004] Length = 687 Score = 38.8 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 20/177 (11%), Positives = 43/177 (24%), Gaps = 16/177 (9%) Query: 7 TDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHC 66 Q L L + C + W +G +W ++ Sbjct: 135 AFQALPLPLARIEQFENCRDDY----RMCLDWLNEGGKTIKTLN-QQWIERILQQYAEFF 189 Query: 67 HSNVNNSNPTI---------FKCAISAGRGIGKTTLNAWMMLWLISTRP--GMSIICIAN 115 + + AG G GKT++ WL+ + ++ +A Sbjct: 190 QTIETTPLNRSQCQAVVNGEKSILVLAGAGSGKTSVLIARAGWLLLRQQALPEQVLLLAF 249 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 + + F +L + G + + D++ Sbjct: 250 GRQAADEMNKRIQERLGAKEIQAKTFHALALHIIQQGSHTAPKMSELETDAQKRRDF 306 >gi|257063128|ref|YP_003142800.1| hypothetical protein Shel_03900 [Slackia heliotrinireducens DSM 20476] gi|256790781|gb|ACV21451.1| uncharacterized conserved protein [Slackia heliotrinireducens DSM 20476] Length = 998 Score = 38.8 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 28/245 (11%), Positives = 57/245 (23%), Gaps = 22/245 (8%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 + A G GKT + A ++ + M + I L + + ++L + +R Sbjct: 481 ILMAPTGFGKTVIGACII-----GKLKMRTLVIVPKTN-LIDQWKTRLEQFLVIEDNRPA 534 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN----THGMAVF 196 +S S D P V Sbjct: 535 LLTKSGRPSRRKRPVIGQIGGGKNAPSGIVDIATFQSLSFKDDLGIPSAKPIVEDYGLVI 594 Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256 DE ++ + + +++ +R +G E Sbjct: 595 CDECHY---GAAPNLELVMKNVTAKYVYGLSATPKRADGL---------ERIIYMHCGPI 642 Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYA 316 + L R+ + P N + A + +D Sbjct: 643 RHKVDPKEQAAEQGFVRTLQPRFTRVRLASLEPGFSFNQVVDALCEHAARNDLIAEDAAG 702 Query: 317 PLIMG 321 + G Sbjct: 703 AVRAG 707 >gi|168181377|ref|ZP_02616041.1| 6-phospho-beta-glucosidase BglA [Clostridium botulinum Bf] gi|182675298|gb|EDT87259.1| 6-phospho-beta-glucosidase BglA [Clostridium botulinum Bf] Length = 598 Score = 38.8 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 14/113 (12%), Positives = 32/113 (28%), Gaps = 3/113 (2%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS---ML 135 K AI RG KTT+ + + + + K + + Sbjct: 113 KVAIIEPRGFAKTTIFDMAVSVWLHCYEKSMFTLLGAKTDSDATQFLDSIKKVFNDNTKI 172 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH 188 + ++ +G + + + Y T + + R + + G Sbjct: 173 IKCFGKLINIKAIKTNGERYTVNSNEVEFTNGTYIKTVGSGTSVRGNNWGGIR 225 >gi|145633082|ref|ZP_01788814.1| DNA helicase II [Haemophilus influenzae 3655] gi|144986308|gb|EDJ92887.1| DNA helicase II [Haemophilus influenzae 3655] Length = 726 Score = 38.8 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 81/302 (26%), Gaps = 29/302 (9%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIA 114 E ++ ++ V + AG G GKT + + WLI+ SI+ + Sbjct: 5 ELLDGLNDKQREAVAAPLGNH---LVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 + S H+ + + +G+ + Sbjct: 62 FTNKAAAEMRHRIQSTLAKHAQHQLFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSE 121 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 + HN DE + P + + + Sbjct: 122 -DQLRLIKRLLKLHN-------FDEKAF-PPKQACWYINNKKDEGLR--------PNDIE 164 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294 + ++ ++ YQ +D + + +F V+ Sbjct: 165 DFNDRQEREWIKIYQIYQDTCDRAGLVDFAELLIRVYELFEKKPLILQRYQQRFQHILVD 224 Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354 F N I+ + + +++ D D++ + RG IE+I + Sbjct: 225 EFQDTNKIQYK-WIKILAGKTGKVMIVGD-----DDQS-IYGWRGAQIENIQKFLKDFKA 277 Query: 355 ET 356 ET Sbjct: 278 ET 279 >gi|123495150|ref|XP_001326674.1| Type III restriction enzyme, res subunit family protein [Trichomonas vaginalis G3] gi|121909592|gb|EAY14451.1| Type III restriction enzyme, res subunit family protein [Trichomonas vaginalis G3] Length = 871 Score = 38.8 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 35/213 (16%), Positives = 62/213 (29%), Gaps = 19/213 (8%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + G GKT + + +M+ P II A + A V + +S + Sbjct: 72 NTLVCLPTGTGKTFIASVVMMNFYRWYPSSLIIFCATTR--------ALVEQQISAC-NS 122 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + ++ G + L + + D + T +T E + P + D Sbjct: 123 FTTIPEDDTVVLVGTSSTTLRKIVWDDYRVVYATPQTVQNEIKKGKLDP--CKISLIIFD 180 Query: 199 EASGTP-DIINKSILGFFTELNPNRFWIMTSNTRRLN-----GWFYDIFNIPLEDWKRYQ 252 EA I E + I S T N Y++ + + Sbjct: 181 EAHHAHGKQSYGMITRMVAERSSQFRVIGLSATPGSNIQQIQDIIYNLMI--SQIIYKDD 238 Query: 253 IDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285 D + E I G D + R + Sbjct: 239 TDPDIAQYQHQTDIEYITVHAGDDDEAVRHNLD 271 >gi|309973348|gb|ADO96549.1| DNA helicase II [Haemophilus influenzae R2846] Length = 727 Score = 38.8 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 81/302 (26%), Gaps = 29/302 (9%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIA 114 E ++ ++ V + AG G GKT + + WLI+ SI+ + Sbjct: 6 ELLDGLNDKQREAVAAPLGNH---LVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 62 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 + S H+ + + +G+ + Sbjct: 63 FTNKAAAEMRHRIQSTLAKHAQHQLFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSE 122 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 + HN DE + P + + + Sbjct: 123 -DQLRLIKRLLKLHN-------FDEKAF-PPKQACWYINNKKDEGLR--------PNDIE 165 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294 + ++ ++ YQ +D + + +F V+ Sbjct: 166 DFNDRQEREWIKIYQIYQDTCDRAGLVDFAELLIRVYELFEKKPLILQRYQQRFQHILVD 225 Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354 F N I+ + + +++ D D++ + RG IE+I + Sbjct: 226 EFQDTNKIQYK-WIKILAGKTGKVMIVGD-----DDQS-IYGWRGAQIENIQKFLKDFKA 278 Query: 355 ET 356 ET Sbjct: 279 ET 280 >gi|294635655|ref|ZP_06714129.1| helicase IV [Edwardsiella tarda ATCC 23685] gi|291090985|gb|EFE23546.1| helicase IV [Edwardsiella tarda ATCC 23685] Length = 694 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 25/209 (11%), Positives = 51/209 (24%), Gaps = 22/209 (10%) Query: 14 ELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNS 73 L E + A W +G+ L +W + Sbjct: 155 RLAEFPVCASLYHD-------CLAWRDEGESLRQ-QHNRQWSQRMLNEQADFFAQVEAQP 206 Query: 74 NPTI---------FKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKN 122 + AG G GKT++ + WL+ G I+ +A + Sbjct: 207 LNPSQALAVVNGEANVLVLAGAGSGKTSVLLARVAWLLQRGLAEGPQILLLAFGRRAAQE 266 Query: 123 TLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID--SKHYTITCRTYSEER 180 + F +L + + + D ++H + + Sbjct: 267 MAQRLPACPGGDSVAAKTFHALALQIVEQAGRKPVRLSRLESDRQARHDFLLAEWCQQCA 326 Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINK 209 +A DE + + + Sbjct: 327 TKKSQAKGWRQWLASLFDE-TPLEEAFWQ 354 >gi|138895652|ref|YP_001126105.1| DNA/RNA helicase [Geobacillus thermodenitrificans NG80-2] gi|134267165|gb|ABO67360.1| DNA/RNA helicase [Geobacillus thermodenitrificans NG80-2] Length = 815 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 46/185 (24%), Gaps = 36/185 (19%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P Q+E +E ++ + K + G+GKT L A R + Sbjct: 224 PRFAQVEALERLEAAYEEGYD-------KAMVVMATGLGKTYLAA------FFARRFSRV 270 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + IA+ E L+ + FE + D Sbjct: 271 LFIAHREEILRQ--------------AKQSFEC------VIPDRTAGIYDGHQKDGNADM 310 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 + ++ + DE + + P +T+ Sbjct: 311 VFASIFTLSMKKHLFSFRPDSFDLIVVDEFHHAAARSYERV---LRYFRPEFLLGITATP 367 Query: 231 RRLNG 235 R + Sbjct: 368 DRNDN 372 >gi|39968797|ref|XP_365789.1| hypothetical protein MGG_02491 [Magnaporthe oryzae 70-15] gi|145013896|gb|EDJ98537.1| hypothetical protein MGG_02491 [Magnaporthe oryzae 70-15] Length = 1689 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 33/119 (27%), Gaps = 5/119 (4%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTT A ++ R G S++ + + + + N L + +L ++ Sbjct: 1175 GTGKTTTIAHII--RALIRQGKSVLLTSYTHSAVDNILLKLKGDSIPVLRLGAPAKVHPE 1232 Query: 147 -SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + + H T DEAS Sbjct: 1233 VQEFATLAAQPMNSFEEIRTAWHDLPVVATTCLGISHPLFNER--TFDYCIVDEASQIT 1289 >gi|149238153|ref|XP_001524953.1| hypothetical protein LELG_03985 [Lodderomyces elongisporus NRRL YB-4239] gi|146451550|gb|EDK45806.1| hypothetical protein LELG_03985 [Lodderomyces elongisporus NRRL YB-4239] Length = 1936 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 17/122 (13%), Positives = 37/122 (30%), Gaps = 14/122 (11%) Query: 82 ISAGRGIGKTTLNAWMMLWLIS-TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 + + G GKT + A + +W P ++ IA + ++ V W + Sbjct: 1141 VGSPTGSGKT-IVAELAIWHAFKEFPKSKVVYIAPMKALVRER----VDDWRKRISKHTS 1195 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN-THGMAVFNDE 199 ++ L+ E+ E + + + + + V DE Sbjct: 1196 HKLVELTGDSLPSTHEVKEADIIVTTPEKF-------DGISRNWQTRKFVQQVSLVIMDE 1248 Query: 200 AS 201 Sbjct: 1249 IH 1250 >gi|115387249|ref|XP_001211130.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114195214|gb|EAU36914.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 918 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 50/157 (31%), Gaps = 12/157 (7%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 ++ G+GKT + A +ML I+ +A ++ + + A Sbjct: 325 NLLVALPTGLGKTFIAATIMLNWFRWTRDAQIVFVAPTKPLVAQQVSACF---------G 375 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 +S + +G A + D + + +T +T + P + + D Sbjct: 376 VAGIPRSQTTMLTGEAAPGIRAQEWQDKRVFFMTPQTLINDLKSGIADP--KRIVLLVVD 433 Query: 199 EASGTPDIINKS-ILGFFTELNPNRFWIMTSNTRRLN 234 EA ++ F N + + + T Sbjct: 434 EAHRATGGYAYVEVVKFLRRYNQSFRVLALTATPGST 470 >gi|169770983|ref|XP_001819961.1| hypothetical protein AOR_1_1462154 [Aspergillus oryzae RIB40] gi|238486528|ref|XP_002374502.1| nucleolar ATPase Kre33, putative [Aspergillus flavus NRRL3357] gi|83767820|dbj|BAE57959.1| unnamed protein product [Aspergillus oryzae] gi|220699381|gb|EED55720.1| nucleolar ATPase Kre33, putative [Aspergillus flavus NRRL3357] Length = 1068 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 42/150 (28%), Gaps = 15/150 (10%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + + S A++AGRG GK+ + +I + Sbjct: 261 QAKALLTFVDAIAEKTLRST-----VALTAGRGRGKSAALGVAIA-AAVAHGYSNIFITS 314 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 S LK L+ V K L + + L + ++ ++ + + Sbjct: 315 PSPENLKT-LFEFVFKGFDALGYLDHVDYTILQSTNPDFNKAIVRVNIHRQHRQTIQYIQ 373 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + DEA+ P Sbjct: 374 PQDAHVLGQAE--------LLVIDEAAAIP 395 >gi|301755892|ref|XP_002913804.1| PREDICTED: DNA2-like helicase-like, partial [Ailuropoda melanoleuca] Length = 1069 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 25/198 (12%), Positives = 56/198 (28%), Gaps = 22/198 (11%) Query: 13 QELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNN 72 Q+L ++++ F +++ P+ K ++ Q + M+ V Sbjct: 597 QKLRDLIIDFREP-QFISYLSSVLPYDAKDTVACILKGLNKPQRQAMKKV---------- 645 Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 + + G GKTT ++ L + G S++ + + + + N L + Sbjct: 646 LLSKDYTLIVGMP-GTGKTTTICTLVRILYAC--GFSVLLTSYTHSAVDNILLKLAKFKI 702 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQS-----MGIDSKHYTITCRTYSEERPDTFVGP 187 L ++ + + + + I T Sbjct: 703 GFLRLGQTQKVHQDIQKFTEEEVCRSKSIKSSALLEELYNSHRIVATTCMGINHP---IF 759 Query: 188 HNTHGMAVFNDEASGTPD 205 DEAS Sbjct: 760 SRKTFDFCIVDEASQISQ 777 >gi|281346967|gb|EFB22551.1| hypothetical protein PANDA_001621 [Ailuropoda melanoleuca] Length = 1016 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 25/198 (12%), Positives = 56/198 (28%), Gaps = 22/198 (11%) Query: 13 QELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNN 72 Q+L ++++ F +++ P+ K ++ Q + M+ V Sbjct: 565 QKLRDLIIDFREP-QFISYLSSVLPYDAKDTVACILKGLNKPQRQAMKKV---------- 613 Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 + + G GKTT ++ L + G S++ + + + + N L + Sbjct: 614 LLSKDYTLIVGMP-GTGKTTTICTLVRILYAC--GFSVLLTSYTHSAVDNILLKLAKFKI 670 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQS-----MGIDSKHYTITCRTYSEERPDTFVGP 187 L ++ + + + + I T Sbjct: 671 GFLRLGQTQKVHQDIQKFTEEEVCRSKSIKSSALLEELYNSHRIVATTCMGINHP---IF 727 Query: 188 HNTHGMAVFNDEASGTPD 205 DEAS Sbjct: 728 SRKTFDFCIVDEASQISQ 745 >gi|189082537|sp|Q0CWI2|MPH1_ASPTN RecName: Full=ATP-dependent DNA helicase mph1 Length = 1100 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 50/157 (31%), Gaps = 12/157 (7%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 ++ G+GKT + A +ML I+ +A ++ + + A Sbjct: 325 NLLVALPTGLGKTFIAATIMLNWFRWTRDAQIVFVAPTKPLVAQQVSACF---------G 375 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 +S + +G A + D + + +T +T + P + + D Sbjct: 376 VAGIPRSQTTMLTGEAAPGIRAQEWQDKRVFFMTPQTLINDLKSGIADP--KRIVLLVVD 433 Query: 199 EASGTPDIINKS-ILGFFTELNPNRFWIMTSNTRRLN 234 EA ++ F N + + + T Sbjct: 434 EAHRATGGYAYVEVVKFLRRYNQSFRVLALTATPGST 470 >gi|168244020|ref|ZP_02668952.1| helicase family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194451781|ref|YP_002048512.1| helicase family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194410085|gb|ACF70304.1| helicase family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205337051|gb|EDZ23815.1| helicase family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 952 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 29/242 (11%), Positives = 60/242 (24%), Gaps = 40/242 (16%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 + I+ G+GKT ++ LI G I+ +A + E Sbjct: 122 PRQRILIADAVGLGKTLEAGILVSELIRRGRGKRILVLAVK--SMLTQFQKEF------- 172 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH---NTHG 192 F + L +G + HY + H N Sbjct: 173 --WSRFAIPLTRLDSAGLQKVRNRIPTNHNPFHYFDKTIISIDTLKQDIEYRHHLENAWW 230 Query: 193 MAVFNDEASGTPDIINKSIL----GFFTELNPNRFWIMTS----------------NTRR 232 + DEA S+ + + + + + Sbjct: 231 DIIVIDEAHNVAQRGTSSLRSKLAKLLSGRSDTLIMLSATPHDGKAESFASLMNMLDPTA 290 Query: 233 LNGW-FYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEG-----IISRYGLDSDVARIEILG 286 + Y+ + ++ + + + F E + G + + R + Sbjct: 291 IANPKEYEYADFADKNLVVRRFKKDVKDQMAGEFPERNIVKLMRPATGAEEEAYRRLVES 350 Query: 287 QF 288 QF Sbjct: 351 QF 352 >gi|170725255|ref|YP_001759281.1| ATP-dependent RNA helicase SrmB [Shewanella woodyi ATCC 51908] gi|169810602|gb|ACA85186.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC 51908] Length = 408 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 29/253 (11%), Positives = 60/253 (23%), Gaps = 24/253 (9%) Query: 52 HRWQLEFMEAVDVH----CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107 LE ++A+ H A G GKT L I P Sbjct: 9 DPILLESLKAMGHHKPTTIQQQTIPLAMDQRDILARAPTGTGKTASFLLPALQHIIDFPR 68 Query: 108 M-----SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162 ++ + + E++ + +E+ ++ +G Q Sbjct: 69 RFSGQARVVILTPT---------RELASQIHRYASHLAYELDLNTVIITGG-VPYAPQEE 118 Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222 + + + + DEA D+ +++ + R Sbjct: 119 ALKGNVDILVATPGRLMEYLDKGLFNAEEVEILVIDEADRMLDMGFSAVVETIAIESVGR 178 Query: 223 FWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI 282 M + + L D + + + I Sbjct: 179 KQTMLFSATLEGSDVGRFSHQLLTDPVKVE---AEAPRSEKAKIHQWIHIADDKEHKF-- 233 Query: 283 EILGQFPQQEVNN 295 ++L QQE Sbjct: 234 KLLCSILQQEETQ 246 >gi|34496679|ref|NP_900894.1| hypothetical protein CV_1224 [Chromobacterium violaceum ATCC 12472] gi|34102534|gb|AAQ58899.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 693 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 29/231 (12%), Positives = 59/231 (25%), Gaps = 19/231 (8%) Query: 65 HCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL 124 H +F + G GKT + L +I + + ++ T Sbjct: 183 HAARGKAGRPQGLFSLTV--PTGGGKTLASLAFALDHALMHGLRRVIFVIPFTSVVEQTA 240 Query: 125 WAEVSKWLSMLPHRHWFEM-QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS------ 177 A + L + E + P + + +++ + + T Sbjct: 241 -AVFRQAFGDLGEQAVLEHHSAFVDDPGKAPEARDKLTQAMENWDWPVVVTTSVQFFESL 299 Query: 178 -EERPDTFVGPHNTHGMAVFNDEASGTP----DIINKSILGFFTELNPNRFWIMTSNT-- 230 RP HN G V DEA P ++ + + Sbjct: 300 FASRPSRCRKLHNIAGSVVILDEAQALPLAQLRPCVAALDELARNYRTSIVLCTATQPAL 359 Query: 231 --RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279 R G F + + + + ++ R + + S Sbjct: 360 SERDFVGGFAQVEELAQDPARLFRALERVTVRHIGEADDAALVARFAASPQ 410 >gi|291565642|dbj|BAI87914.1| arsenite-antimonite (ArsAB) efflux family [Arthrospira platensis NIES-39] Length = 637 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 8/127 (6%) Query: 80 CAISAGRG-IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 A+ +G+G +GKTTL + L S P I+ ++ +L + + P+ Sbjct: 10 LALFSGKGGVGKTTLACGLALHWASQFPDDRILLLSTDPAH---SLGDVLQMQVDNTPNH 66 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + + L A + + Y T + + V++ Sbjct: 67 VAASVDFVPLPNLSIRALDAHILLKDFKERYGDTLQLL----VERGSFVEGEDLTPVWDL 122 Query: 199 EASGTPD 205 E G + Sbjct: 123 EWPGVDE 129 >gi|284051493|ref|ZP_06381703.1| arsenite-activated ATPase ArsA [Arthrospira platensis str. Paraca] Length = 637 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 8/127 (6%) Query: 80 CAISAGRG-IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 A+ +G+G +GKTTL + L S P I+ ++ +L + + P+ Sbjct: 10 LALFSGKGGVGKTTLACGLALHWASQFPDDRILLLSTDPAH---SLGDVLQMQVDNTPNH 66 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + + L A + + Y T + + V++ Sbjct: 67 VAASVDFVPLPNLSIRALDAHILLKDFKERYGDTLQLL----VERGSFVEGEDLTPVWDL 122 Query: 199 EASGTPD 205 E G + Sbjct: 123 EWPGVDE 129 >gi|268324635|emb|CBH38223.1| conserved hypothetical protein, type III restriction enzyme, res subunit family [uncultured archaeon] Length = 858 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 22/171 (12%), Positives = 48/171 (28%), Gaps = 21/171 (12%) Query: 52 HRWQLEFMEAVDVHCHS---NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM 108 +Q+E + +F A G GKT + A ++L+L Sbjct: 38 RPYQIEAFTRFFHCLDREFPGKDWPLHFLFNMA----TGSGKTLIMAGLILYLYVKGYRN 93 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 + + ++ N + +L+ L + F+ ++ D+ Sbjct: 94 FLFFVNST-----NIIEKTRDNFLNPLSAKFLFKENIRFGTRRVNITPVVNCEGVNDNGI 148 Query: 169 YTITCR--------TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211 T +E T+ + + + DEA + Sbjct: 149 NICFTTIQKLHSDLTTEKENAITYEDFKDKKIVLL-ADEAHHINTQTKAQM 198 >gi|58336408|ref|YP_192993.1| phage DEAD box family helicase [Lactobacillus acidophilus NCFM] gi|58253725|gb|AAV41962.1| putative phage DEAD box family helicase [Lactobacillus acidophilus NCFM] Length = 944 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 62/185 (33%), Gaps = 32/185 (17%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS 109 +P++ Q ++ ++ + + + + G GKT L A+ + Sbjct: 207 EPNQMQKAALKNLNSLVNEGAK-------RALVVSATGTGKTYLGAFAV----KDFKPKK 255 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 + I + + K TL ++ +S SG + + ++ + Sbjct: 256 FLYIVHRQQIAKKTL---------DSFYKVIGGAKSDYGILSGNHHDTDKRYL------- 299 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 T +T S++ + DEA T + I+ +F P MT+ Sbjct: 300 FATIQTLSQDNV--LDDLVRNEFDYILIDEAHRTAAPSYQKIINYF---QPKFLLGMTAT 354 Query: 230 TRRLN 234 R++ Sbjct: 355 PERMD 359 >gi|50547433|ref|XP_501186.1| YALI0B21538p [Yarrowia lipolytica] gi|74660084|sp|Q6CDS6|ROK1_YARLI RecName: Full=ATP-dependent RNA helicase ROK1 gi|49647052|emb|CAG83439.1| YALI0B21538p [Yarrowia lipolytica] Length = 547 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 21/175 (12%), Positives = 41/175 (23%), Gaps = 23/175 (13%) Query: 36 FPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95 P+ + ++ P Q E + + A G GKT + Sbjct: 119 HPYLLANLKKNKYTDPTPIQCESIPTMLNG------------RDLIACAPTGSGKTMAYS 166 Query: 96 WMMLWLISTRPGM-------SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148 M+ ++ + G + +A ++ A S + + + + L Sbjct: 167 IPMVEMLGKKKGSKDAKKGIKALVVAPTKELASQIFNAVFSLCVGVGKKKDELKPCLLDK 226 Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + S D V DEA Sbjct: 227 STADKLRNGKVSSQKYD----ICITTPLRLVSALNDGSLDLGSLDLVIFDEADKL 277 >gi|312113987|ref|YP_004011583.1| metal dependent phosphohydrolase [Rhodomicrobium vannielii ATCC 17100] gi|311219116|gb|ADP70484.1| metal dependent phosphohydrolase [Rhodomicrobium vannielii ATCC 17100] Length = 743 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 22/174 (12%), Positives = 37/174 (21%), Gaps = 16/174 (9%) Query: 68 SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN---SETQLKNTL 124 N P++F + G GKT + L II Q + Sbjct: 235 RGKANEAPSLFTLTV--PTGGGKTLTSLAFALDHARAHGMRRIIYAIPFTSVIDQTADIF 292 Query: 125 WAE----VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180 + S + + + + + Sbjct: 293 RKLFGDDIVLEHHSAIDEEKVRNLSSRDKLRLAMEDWAAPVVVTTTVQLFESLFSAR--- 349 Query: 181 PDTFVGPHNTHGMAVFNDEASGTPDI----INKSILGFFTELNPNRFWIMTSNT 230 P HN G + DEA P I ++I + Sbjct: 350 PSRCRKLHNIAGSVIVLDEAQTLPRHLLIPIMRAIEELAANYGCTVVLCTATQP 403 >gi|291618151|ref|YP_003520893.1| YojI [Pantoea ananatis LMG 20103] gi|291153181|gb|ADD77765.1| YojI [Pantoea ananatis LMG 20103] Length = 550 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 27/195 (13%), Positives = 51/195 (26%), Gaps = 17/195 (8%) Query: 48 FSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA------ISAGRGIGKTTLNAWMMLWL 101 F+ WQ + V H N P + + G G GK+TL A ++ L Sbjct: 314 FNGETDWQTLELRDVTFHYGDNGFQVGPVNLRLQRGELVFLIGGNGSGKSTL-AMLLTGL 372 Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ----SLSLHPSGWYAEL 157 + G +I + + S + + + W +L Sbjct: 373 YRPQSGSLLIDGKPVDMGDLDRWRKHFSAVFTDVHLFDRLIDSKGDPASPARIQQWLEKL 432 Query: 158 LEQSMGIDSKHYTITCRTYSEER-PDTFVGPHNTHGMAVFNDEASGTPDIIN-----KSI 211 Q + + + + + + DE + D + + Sbjct: 433 KMQDKLKIEGNKILNLQLSKGQSKRLALLLAVAEQRDVLLLDEWAADQDPHFRRVFYREL 492 Query: 212 LGFFTELNPNRFWIM 226 L F I Sbjct: 493 LPALQAAGKTVFAIS 507 >gi|301782221|ref|XP_002926521.1| PREDICTED: u5 small nuclear ribonucleoprotein 200 kDa helicase-like [Ailuropoda melanoleuca] Length = 2136 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 15/161 (9%) Query: 54 WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q +F + + V NS+ +F + A G GKT + +L ++ + Sbjct: 1321 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1377 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 I E + W R + + Sbjct: 1378 YITPMEALAEQVY----MDWYEKFQDRL------NKKVVLLTGETSTDLKLLGKGNIIIS 1427 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212 T + + + DE + Sbjct: 1428 TPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLE 1468 >gi|281371480|ref|NP_001032855.2| activating signal cointegrator 1 complex subunit 3-like 1 [Rattus norvegicus] Length = 2136 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 15/161 (9%) Query: 54 WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q +F + + V NS+ +F + A G GKT + +L ++ + Sbjct: 1321 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1377 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 I E + W R + + Sbjct: 1378 YITPMEALAEQVY----MDWYEKFQDRL------NKKVVLLTGETSTDLKLLGKGNIIIS 1427 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212 T + + + DE + Sbjct: 1428 TPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLE 1468 >gi|281343455|gb|EFB19039.1| hypothetical protein PANDA_016179 [Ailuropoda melanoleuca] Length = 2121 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 15/161 (9%) Query: 54 WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q +F + + V NS+ +F + A G GKT + +L ++ + Sbjct: 1306 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1362 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 I E + W R + + Sbjct: 1363 YITPMEALAEQVY----MDWYEKFQDRL------NKKVVLLTGETSTDLKLLGKGNIIIS 1412 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212 T + + + DE + Sbjct: 1413 TPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLE 1453 >gi|259146773|emb|CAY80030.1| Slh1p [Saccharomyces cerevisiae EC1118] Length = 1967 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 12/121 (9%) Query: 82 ISAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 + + G GKT + A + +W PG I+ IA + ++ V W + Sbjct: 1160 VGSPTGSGKT-IVAELAIWHAFKTFPGKKIVYIAPMKALVRER----VDDWRKKI----- 1209 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + + + + + D+ T + + + DE Sbjct: 1210 TPVTGDKVVELTGDSLPDPKDV-HDATIVITTPEKFDGISRNWQTRKFVQDVSLIIMDEI 1268 Query: 201 S 201 Sbjct: 1269 H 1269 >gi|256272657|gb|EEU07634.1| Slh1p [Saccharomyces cerevisiae JAY291] Length = 1967 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 12/121 (9%) Query: 82 ISAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 + + G GKT + A + +W PG I+ IA + ++ V W + Sbjct: 1160 VGSPTGSGKT-IVAELAIWHAFKTFPGKKIVYIAPMKALVRER----VDDWRKKI----- 1209 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + + + + + D+ T + + + DE Sbjct: 1210 TPVTGDKVVELTGDSLPDPKDV-HDATIVITTPEKFDGISRNWQTRKFVQDVSLIIMDEI 1268 Query: 201 S 201 Sbjct: 1269 H 1269 >gi|227874786|ref|ZP_03992939.1| helicase [Mobiluncus mulieris ATCC 35243] gi|227844561|gb|EEJ54717.1| helicase [Mobiluncus mulieris ATCC 35243] Length = 920 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 20/192 (10%), Positives = 38/192 (19%), Gaps = 24/192 (12%) Query: 39 GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98 G G LE S W + H + G GK+ + + Sbjct: 16 GKLGDSLEVLSGFEAWAESTGRPLYPHQLEAAEHIILEDRHLIAPTPTGSGKSLIGVAGI 75 Query: 99 LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 LW ++ G A + + + V + + + + Sbjct: 76 LWALAR--GGVAYYTAPLKALVSEKFFDLVD----LFGAANVGMITGDGSVNAAAPIICA 129 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII--NKSILGFFT 216 + + V DE D Sbjct: 130 TAEILANLALRWGDTL----------------DVDTVVMDEFHYYGDAERGWAWQAPLLL 173 Query: 217 ELNPNRFWIMTS 228 N + + Sbjct: 174 LPNTRFILMSAT 185 >gi|238604032|ref|XP_002396101.1| hypothetical protein MPER_03733 [Moniliophthora perniciosa FA553] gi|215468003|gb|EEB97031.1| hypothetical protein MPER_03733 [Moniliophthora perniciosa FA553] Length = 205 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 4/66 (6%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + H +S+P K I G GK+T+ ++ + + ++ +A Sbjct: 74 QERAFRIIANH----AASSHPEQLKMYIGGMGGTGKSTVLKALIHYFSVRKEDHRLLVVA 129 Query: 115 NSETQL 120 + + Sbjct: 130 PTGSAA 135 >gi|207344888|gb|EDZ71878.1| YGR271Wp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 960 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 12/121 (9%) Query: 82 ISAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 + + G GKT + A + +W PG I+ IA + ++ V W + Sbjct: 153 VGSPTGSGKT-IVAELAIWHAFKTFPGKKIVYIAPMKALVRER----VDDWRKKI----- 202 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + + + + + D+ T + + + DE Sbjct: 203 TPVTGDKVVELTGDSLPDPKDV-HDATIVITTPEKFDGISRNWQTRKFVQDVSLIIMDEI 261 Query: 201 S 201 Sbjct: 262 H 262 >gi|194220416|ref|XP_001492729.2| PREDICTED: activating signal cointegrator 1 complex subunit 3-like 1 isoform 1 [Equus caballus] Length = 2136 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 15/161 (9%) Query: 54 WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q +F + + V NS+ +F + A G GKT + +L ++ + Sbjct: 1321 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1377 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 I E + W R + + Sbjct: 1378 YITPMEALAEQVY----MDWYEKFQDRL------NKKVVLLTGETSTDLKLLGKGNIIIS 1427 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212 T + + + DE + Sbjct: 1428 TPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLE 1468 >gi|330443576|ref|NP_011787.2| Slh1p [Saccharomyces cerevisiae S288c] gi|190406727|gb|EDV09994.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] gi|329138905|tpg|DAA08359.2| TPA: Slh1p [Saccharomyces cerevisiae S288c] Length = 1967 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 12/121 (9%) Query: 82 ISAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 + + G GKT + A + +W PG I+ IA + ++ V W + Sbjct: 1160 VGSPTGSGKT-IVAELAIWHAFKTFPGKKIVYIAPMKALVRER----VDDWRKKI----- 1209 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + + + + + D+ T + + + DE Sbjct: 1210 TPVTGDKVVELTGDSLPDPKDV-HDATIVITTPEKFDGISRNWQTRKFVQDVSLIIMDEI 1268 Query: 201 S 201 Sbjct: 1269 H 1269 >gi|151943543|gb|EDN61854.1| conserved protein [Saccharomyces cerevisiae YJM789] Length = 1967 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 12/121 (9%) Query: 82 ISAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 + + G GKT + A + +W PG I+ IA + ++ V W + Sbjct: 1160 VGSPTGSGKT-IVAELAIWHAFKTFPGKKIVYIAPMKALVRER----VDDWRKKI----- 1209 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + + + + + D+ T + + + DE Sbjct: 1210 TPVTGDKVVELTGDSLPDPKDV-HDATIVITTPEKFDGISRNWQTRKFVQDVSLIIMDEI 1268 Query: 201 S 201 Sbjct: 1269 H 1269 >gi|149369448|ref|ZP_01889300.1| hypothetical protein SCB49_06472 [unidentified eubacterium SCB49] gi|149356875|gb|EDM45430.1| hypothetical protein SCB49_06472 [unidentified eubacterium SCB49] Length = 849 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 18/149 (12%), Positives = 40/149 (26%), Gaps = 16/149 (10%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT L +M R + +A + ++N + + + F Sbjct: 6 GSGKTVLGLEIM-----QRIDKKALVLAPTL-TIRNQWYDRMDEC---------FVKDKD 50 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + S L E + ++ + + + DEA + Sbjct: 51 VISVSFDIKNLAEITFTTYQSLHSFFKNDCDFDNEKLIAFFADAGIETLVLDEAHHLKNE 110 Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLNG 235 K + + +T+ + Sbjct: 111 WWKPLF-TLKSIPNCTIVALTATPPYDSD 138 >gi|149193952|ref|ZP_01871050.1| hypothetical protein CMTB2_02668 [Caminibacter mediatlanticus TB-2] gi|149135905|gb|EDM24383.1| hypothetical protein CMTB2_02668 [Caminibacter mediatlanticus TB-2] Length = 908 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 25/211 (11%), Positives = 62/211 (29%), Gaps = 28/211 (13%) Query: 3 RLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEH-----------FSQP 51 R + + ++ + A+ F+ F G K + F + Sbjct: 20 RFSKDIKLYDYQIEALKNTAK-------FLSILFEDGQINKKRVYELYKDKLENNIFLED 72 Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 + + + + + +C+ G GKT L ++ L+ + P +I+ Sbjct: 73 TKIGDSYFSELFLGKKQEKIEFKELVNRCSFWMATGSGKT-LVMIKLIELLQSFPKKNIL 131 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 +A ++ E+ + + S + + + Sbjct: 132 ILAPTD---------EIINQIKKHIDIYNSYHTSNKIEIYDLRDFDDRYNNRVYIYRSNN 182 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 + ++E+ F+ N + DEA Sbjct: 183 IVDSETKEKQLNFMEFFNNGEWYLILDEAHK 213 >gi|149180791|ref|ZP_01859294.1| Putative helicase [Bacillus sp. SG-1] gi|148851581|gb|EDL65728.1| Putative helicase [Bacillus sp. SG-1] Length = 1049 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 63/187 (33%), Gaps = 29/187 (15%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW-MMLWLISTRPGM 108 QP+ +Q E +E + +K + A G+GKT ++A+ + + Sbjct: 322 QPYYYQKEILEKLQA------EREVHHRYKNLLVAATGVGKTVISAFDYKRFRKANGGKA 375 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 ++ +A+ E LK +L + ++L ++ +M + PS + + Sbjct: 376 KLLFVAHREEILKQSLHT----FRAVLREPNFGDMLVGAQQPSSLDHLFVSIQSFNSKEL 431 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 + T + + DE + + P +T+ Sbjct: 432 HQHTESGF---------------YDFIVVDEFHHAAADSYQKL---LNHYQPQILLGLTA 473 Query: 229 NTRRLNG 235 R++G Sbjct: 474 TPERMDG 480 >gi|148696230|gb|EDL28177.1| activating signal cointegrator 1 complex subunit 3-like 1, isoform CRA_c [Mus musculus] Length = 2143 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 15/161 (9%) Query: 54 WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q +F + + V NS+ +F + A G GKT + +L ++ + Sbjct: 1328 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1384 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 I E + W R + + Sbjct: 1385 YITPMEALAEQVY----MDWYEKFQDRL------NKKVVLLTGETSTDLKLLGKGNIIIS 1434 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212 T + + + DE + Sbjct: 1435 TPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLE 1475 >gi|148696228|gb|EDL28175.1| activating signal cointegrator 1 complex subunit 3-like 1, isoform CRA_a [Mus musculus] Length = 2135 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 15/161 (9%) Query: 54 WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q +F + + V NS+ +F + A G GKT + +L ++ + Sbjct: 1320 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1376 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 I E + W R + + Sbjct: 1377 YITPMEALAEQVY----MDWYEKFQDRL------NKKVVLLTGETSTDLKLLGKGNIIIS 1426 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212 T + + + DE + Sbjct: 1427 TPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLE 1467 >gi|1143249|gb|AAC49699.1| G9365 ORF [Saccharomyces cerevisiae] Length = 1967 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 12/121 (9%) Query: 82 ISAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 + + G GKT + A + +W PG I+ IA + ++ V W + Sbjct: 1160 VGSPTGSGKT-IVAELAIWHAFKTFPGKKIVYIAPMKALVRER----VDDWRKKI----- 1209 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + + + + + D+ T + + + DE Sbjct: 1210 TPVTGDKVVELTGDSLPDPKDV-HDATIVITTPEKFDGISRNWQTRKFVQDVSLIIMDEI 1268 Query: 201 S 201 Sbjct: 1269 H 1269 >gi|73980233|ref|XP_864157.1| PREDICTED: similar to activating signal cointegrator 1 complex subunit 3-like 1 isoform 5 [Canis familiaris] Length = 2146 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 15/161 (9%) Query: 54 WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q +F + + V NS+ +F + A G GKT + +L ++ + Sbjct: 1328 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1384 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 I E + W R + + Sbjct: 1385 YITPMEALAEQVY----MDWYEKFQDRL------NKKVVLLTGETSTDLKLLGKGNIIIS 1434 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212 T + + + DE + Sbjct: 1435 TPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLE 1475 >gi|73980225|ref|XP_532949.2| PREDICTED: similar to activating signal cointegrator 1 complex subunit 3-like 1 isoform 1 [Canis familiaris] Length = 2143 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 15/161 (9%) Query: 54 WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q +F + + V NS+ +F + A G GKT + +L ++ + Sbjct: 1328 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1384 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 I E + W R + + Sbjct: 1385 YITPMEALAEQVY----MDWYEKFQDRL------NKKVVLLTGETSTDLKLLGKGNIIIS 1434 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212 T + + + DE + Sbjct: 1435 TPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLE 1475 >gi|73980237|ref|XP_864200.1| PREDICTED: similar to activating signal cointegrator 1 complex subunit 3-like 1 isoform 7 [Canis familiaris] Length = 2143 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 15/161 (9%) Query: 54 WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q +F + + V NS+ +F + A G GKT + +L ++ + Sbjct: 1327 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1383 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 I E + W R + + Sbjct: 1384 YITPMEALAEQVY----MDWYEKFQDRL------NKKVVLLTGETSTDLKLLGKGNIIIS 1433 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212 T + + + DE + Sbjct: 1434 TPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLE 1474 >gi|73980239|ref|XP_864228.1| PREDICTED: similar to activating signal cointegrator 1 complex subunit 3-like 1 isoform 8 [Canis familiaris] Length = 2132 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 15/161 (9%) Query: 54 WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q +F + + V NS+ +F + A G GKT + +L ++ + Sbjct: 1317 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1373 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 I E + W R + + Sbjct: 1374 YITPMEALAEQVY----MDWYEKFQDRL------NKKVVLLTGETSTDLKLLGKGNIIIS 1423 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212 T + + + DE + Sbjct: 1424 TPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLE 1464 >gi|73980243|ref|XP_864276.1| PREDICTED: similar to activating signal cointegrator 1 complex subunit 3-like 1 isoform 10 [Canis familiaris] Length = 2117 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 15/161 (9%) Query: 54 WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q +F + + V NS+ +F + A G GKT + +L ++ + Sbjct: 1302 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1358 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 I E + W R + + Sbjct: 1359 YITPMEALAEQVY----MDWYEKFQDRL------NKKVVLLTGETSTDLKLLGKGNIIIS 1408 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212 T + + + DE + Sbjct: 1409 TPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLE 1449 >gi|73980235|ref|XP_864176.1| PREDICTED: similar to activating signal cointegrator 1 complex subunit 3-like 1 isoform 6 [Canis familiaris] Length = 2151 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 15/161 (9%) Query: 54 WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q +F + + V NS+ +F + A G GKT + +L ++ + Sbjct: 1328 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1384 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 I E + W R + + Sbjct: 1385 YITPMEALAEQVY----MDWYEKFQDRL------NKKVVLLTGETSTDLKLLGKGNIIIS 1434 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212 T + + + DE + Sbjct: 1435 TPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLE 1475 >gi|73980241|ref|XP_864252.1| PREDICTED: similar to activating signal cointegrator 1 complex subunit 3-like 1 isoform 9 [Canis familiaris] Length = 2138 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 15/161 (9%) Query: 54 WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q +F + + V NS+ +F + A G GKT + +L ++ + Sbjct: 1323 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1379 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 I E + W R + + Sbjct: 1380 YITPMEALAEQVY----MDWYEKFQDRL------NKKVVLLTGETSTDLKLLGKGNIIIS 1429 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212 T + + + DE + Sbjct: 1430 TPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLE 1470 >gi|73980247|ref|XP_864316.1| PREDICTED: similar to activating signal cointegrator 1 complex subunit 3-like 1 isoform 12 [Canis familiaris] Length = 2140 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 15/161 (9%) Query: 54 WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q +F + + V NS+ +F + A G GKT + +L ++ + Sbjct: 1325 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1381 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 I E + W R + + Sbjct: 1382 YITPMEALAEQVY----MDWYEKFQDRL------NKKVVLLTGETSTDLKLLGKGNIIIS 1431 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212 T + + + DE + Sbjct: 1432 TPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLE 1472 >gi|73980245|ref|XP_864297.1| PREDICTED: similar to activating signal cointegrator 1 complex subunit 3-like 1 isoform 11 [Canis familiaris] Length = 2148 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 15/161 (9%) Query: 54 WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q +F + + V NS+ +F + A G GKT + +L ++ + Sbjct: 1333 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1389 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 I E + W R + + Sbjct: 1390 YITPMEALAEQVY----MDWYEKFQDRL------NKKVVLLTGETSTDLKLLGKGNIIIS 1439 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212 T + + + DE + Sbjct: 1440 TPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLE 1480 >gi|40018610|ref|NP_796188.2| U5 small nuclear ribonucleoprotein 200 kDa helicase [Mus musculus] gi|38649232|gb|AAH63261.1| Small nuclear ribonucleoprotein 200 (U5) [Mus musculus] gi|123232173|emb|CAM17440.1| activating signal cointegrator 1 complex subunit 3-like 1 [Mus musculus] Length = 2136 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 15/161 (9%) Query: 54 WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q +F + + V NS+ +F + A G GKT + +L ++ + Sbjct: 1321 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1377 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 I E + W R + + Sbjct: 1378 YITPMEALAEQVY----MDWYEKFQDRL------NKKVVLLTGETSTDLKLLGKGNIIIS 1427 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212 T + + + DE + Sbjct: 1428 TPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLE 1468 >gi|50510635|dbj|BAD32303.1| mKIAA0788 protein [Mus musculus] Length = 1909 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 15/161 (9%) Query: 54 WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q +F + + V NS+ +F + A G GKT + +L ++ + Sbjct: 1094 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1150 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 I E + W R + + Sbjct: 1151 YITPMEALAEQVY----MDWYEKFQDRL------NKKVVLLTGETSTDLKLLGKGNIIIS 1200 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212 T + + + DE + Sbjct: 1201 TPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLE 1241 >gi|1723776|sp|P53327|SLH1_YEAST RecName: Full=Antiviral helicase SLH1; AltName: Full=SKI2-like helicase 1 gi|1323493|emb|CAA97301.1| unnamed protein product [Saccharomyces cerevisiae] Length = 1967 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 12/121 (9%) Query: 82 ISAGRGIGKTTLNAWMMLWLIST-RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 + + G GKT + A + +W PG I+ IA + ++ V W + Sbjct: 1160 VGSPTGSGKT-IVAELAIWHAFKTFPGKKIVYIAPMKALVRER----VDDWRKKI----- 1209 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + + + + + D+ T + + + DE Sbjct: 1210 TPVTGDKVVELTGDSLPDPKDV-HDATIVITTPEKFDGISRNWQTRKFVQDVSLIIMDEI 1268 Query: 201 S 201 Sbjct: 1269 H 1269 >gi|301633423|gb|ADK86977.1| DEAD/DEAH box helicase [Mycoplasma pneumoniae FH] Length = 450 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 20/186 (10%), Positives = 47/186 (25%), Gaps = 25/186 (13%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 + +QP Q + H + + G GKT + A ++ + +P Sbjct: 22 NINQPTTIQQLAIPQFLQHQ------------NLIVHSPTGTGKTAVFAIPVIETLLKKP 69 Query: 107 GM---SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163 + +A + + ++ + L + + +Q Sbjct: 70 SKGTTQTLVVAPTRELAEQI----------KTTFINFAKHTHLKVVSLIGGIPIWQQLKQ 119 Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223 ++++ + H + DE D K L Sbjct: 120 LENQPEIVVGTMGRVMDLLERGVIKFEHLEHLIIDEVDLMLDRGFKRKLFDLLGRIEKFE 179 Query: 224 WIMTSN 229 I + Sbjct: 180 QIAVYS 185 >gi|299134435|ref|ZP_07027628.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2] gi|298591182|gb|EFI51384.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2] Length = 859 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 12/143 (8%), Positives = 35/143 (24%), Gaps = 13/143 (9%) Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 H + + A++A GK+ + + + +I+ I + + Sbjct: 140 THYQFGLWRRLVAGERVAVAAPTSAGKSFVLQNFIAARLEGSSPQTIVYIVPTRALIAQV 199 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 + ++ ++ + + + ++ Sbjct: 200 SADVRKLLIGHEGASSDVDVITIPVEAGQPLPRRAIYVLTQERLRMMLSAHPT------- 252 Query: 184 FVGPHNTHGMAVFNDEASGTPDI 206 H + DEA D Sbjct: 253 ------FHAQIIIVDEAHSVGDG 269 >gi|238503900|ref|XP_002383182.1| DNA replication helicase Dna2, putative [Aspergillus flavus NRRL3357] gi|220690653|gb|EED47002.1| DNA replication helicase Dna2, putative [Aspergillus flavus NRRL3357] Length = 1571 Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 35/120 (29%), Gaps = 7/120 (5%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM--Q 144 G GKTT A ++ G S++ + + T + N L + +L ++ + Sbjct: 1081 GTGKTTTIAHII--RALVSQGKSVLLTSYTHTAVDNILLKIRDDNIRILRIGAAAKVHPE 1138 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + + + + T F DEAS Sbjct: 1139 VQQFADLAAVPKNTIEELQGAYEDSQVVATTCLGIGHSVFSQ---RIFDYCIVDEASQIT 1195 >gi|170097585|ref|XP_001880012.1| predicted protein [Laccaria bicolor S238N-H82] gi|164645415|gb|EDR09663.1| predicted protein [Laccaria bicolor S238N-H82] Length = 1066 Score = 38.8 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 38/125 (30%), Gaps = 10/125 (8%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 ++A RG GK+ + + +I + S LK L+ V K + L + Sbjct: 276 VTLTAARGRGKSAAL-GLAIAASLAHGYSNIFVTSPSPENLKT-LFDFVFKGMDALGYEE 333 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + ++ ++ D + + V DE Sbjct: 334 HLDYDIAQSTNPDFNKAIVRVNVFRDHRQTIQYIQPEDAHVLGQAE--------LVVIDE 385 Query: 200 ASGTP 204 A+ P Sbjct: 386 AAAIP 390 >gi|306818078|ref|ZP_07451809.1| superfamily II DNA or RNA helicase [Mobiluncus mulieris ATCC 35239] gi|304649042|gb|EFM46336.1| superfamily II DNA or RNA helicase [Mobiluncus mulieris ATCC 35239] Length = 920 Score = 38.8 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 20/192 (10%), Positives = 38/192 (19%), Gaps = 24/192 (12%) Query: 39 GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98 G G LE S W + H + G GK+ + + Sbjct: 16 GKLGDSLEVLSGFEAWAESTGRPLYPHQLEAAEHIILEDRHLIAPTPTGSGKSLIGVAGI 75 Query: 99 LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 LW ++ G A + + + V + + + + Sbjct: 76 LWALAR--GGVAYYTAPLKALVSEKFFDLVD----LFGAANVGMITGDGSVNAAAPIICA 129 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII--NKSILGFFT 216 + + V DE D Sbjct: 130 TAEILANLALRWGDTL----------------DVDTVVMDEFHYYGDAERGWAWQAPLLL 173 Query: 217 ELNPNRFWIMTS 228 N + + Sbjct: 174 LPNTRFILMSAT 185 >gi|302343154|ref|YP_003807683.1| terminase [Desulfarculus baarsii DSM 2075] gi|301639767|gb|ADK85089.1| Terminase [Desulfarculus baarsii DSM 2075] Length = 539 Score = 38.8 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 38/332 (11%), Positives = 68/332 (20%), Gaps = 66/332 (19%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP---GM 108 WQ + A+ + K ++ R GKT L A + L + Sbjct: 60 RPWQKRIVRALY-----RTRGGRRVVRKALLTLPRKNGKTALAAALALAHLIGPEAEQRG 114 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 + A Q ++AE+ + +P + + Sbjct: 115 QVYSAAADRDQAS-IIFAEMEAVIGAVPEFA-ARCNVQRFRKAIEDDVTGSVYHALS--- 169 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTS 228 H V DE + L ++ S Sbjct: 170 -------------SDDRKAHGLSPSFVVYDELAQARTRHLFDNLDTGAGARREPLMVVIS 216 Query: 229 NTRRLNGWFYDIFN--------------------------IPLEDWKRYQIDTRTVEGID 262 + + + + + W D Sbjct: 217 T--QSSDQHHVMTELVDYGRKLLDGVIEDETFLPIIYAAPPDADPWSEDVWRACNPALGD 274 Query: 263 SGFHEGII------SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSR-EAIDDLY 315 E + R V L + P + FI + Sbjct: 275 FRALEEMRQFAAQAKRIPAKQAVFESLYLNR-PTEVDGRFIAQADWNACAGPVDVEALRG 333 Query: 316 APLIMGCDIAGEGGDKTVVVFR---RGNIIEH 344 P G D+ D T +V G + Sbjct: 334 RPCWAGLDLGST-TDLTALVLYFPEDGGAVLP 364 >gi|162456248|ref|YP_001618615.1| PhoH family protein [Sorangium cellulosum 'So ce 56'] gi|161166830|emb|CAN98135.1| PhoH family protein [Sorangium cellulosum 'So ce 56'] Length = 370 Score = 38.8 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 35/129 (27%), Gaps = 14/129 (10%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT L M + + R II + + L + + Sbjct: 141 GTGKTYLAMAMAVHALLERRVKRIILTRPA------------VEAGERLGFLPGDLAEKV 188 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + + Y L M K + R E P F+ + V DEA Sbjct: 189 NPYLRPLYDAL--HDMMDADKAQGLVTRGQIEVAPLAFMRGRTLNDCFVILDEAQNATSD 246 Query: 207 INKSILGFF 215 + L Sbjct: 247 QMRMFLTRL 255 >gi|121605393|ref|YP_982722.1| type II secretion system protein E [Polaromonas naphthalenivorans CJ2] gi|120594362|gb|ABM37801.1| type II secretion system protein E [Polaromonas naphthalenivorans CJ2] Length = 321 Score = 38.8 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 23/181 (12%), Positives = 50/181 (27%), Gaps = 13/181 (7%) Query: 62 VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET--- 118 + + + + I+ G G GKTTL ++ + P I+ I + Sbjct: 135 MTELQATLIKTAVADRKNILIAGGTGSGKTTLANAVLNEISFISPDHRIVIIEDVLELQC 194 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 +KNT++ L + + +L + K + ++ Sbjct: 195 SVKNTVF------LRTSANIDQVGLLRATLRLRP----DRIVVGEVRDKSALALLKAWNT 244 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 P H + + +E I ++T R+ Sbjct: 245 GHPGGIGTVHANSTGTALVRIGQLIQEAGVPAAPELISEAVNMVISIRRNSTGRIIDEVA 304 Query: 239 D 239 + Sbjct: 305 E 305 >gi|154495131|ref|ZP_02034136.1| hypothetical protein PARMER_04178 [Parabacteroides merdae ATCC 43184] gi|154085681|gb|EDN84726.1| hypothetical protein PARMER_04178 [Parabacteroides merdae ATCC 43184] Length = 750 Score = 38.8 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 40/164 (24%), Gaps = 3/164 (1%) Query: 68 SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127 + S P F + G GKT + L II + + + T Sbjct: 248 RKMAESLPGFFSLTV--PTGGGKTLASMAWALLHAVRYKKKRIIIVIPYTSIIVQTAAVL 305 Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ-SMGIDSKHYTITCRTYSEERPDTFVG 186 + + H +Q S E I + R Sbjct: 306 RDIFGAENVVEHHSNLQQDSNDERSPSLLATENWDAPIIVTTNVQFFESLYACRTSRCRK 365 Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 HN V DEA P IL L + + T Sbjct: 366 LHNICNSVVILDEAQMLPVEFLHPILDVLQSLQASFKASILFTT 409 >gi|145553323|ref|XP_001462336.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124430175|emb|CAK94963.1| unnamed protein product [Paramecium tetraurelia] Length = 960 Score = 38.8 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 48/162 (29%), Gaps = 14/162 (8%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + + + V + +ISA RG GK+ + +I A Sbjct: 249 QAKIILGLIDSLQEKV-----FRYTISISAARGRGKSAAIGMAAAAALKLGF-SNIFVTA 302 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 S L +S ++ F + + +++ T R Sbjct: 303 PSPENLVTFFEFLISSLETL-----DFRQNQHFDVIQSTNPDFNNAVIRVNA---YKTHR 354 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT 216 + + + VF DEA+ P KS+ G T Sbjct: 355 QFVQYIQPQDFVKVANNADLVFCDEAAAIPIQFVKSMFGSHT 396 >gi|307700633|ref|ZP_07637661.1| DEAD/DEAH box helicase [Mobiluncus mulieris FB024-16] gi|307614163|gb|EFN93404.1| DEAD/DEAH box helicase [Mobiluncus mulieris FB024-16] Length = 920 Score = 38.8 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 20/192 (10%), Positives = 38/192 (19%), Gaps = 24/192 (12%) Query: 39 GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98 G G LE S W + H + G GK+ + + Sbjct: 16 GKLGDSLEVLSGFEAWAESTGRPLYPHQLEAAEHIILEDRHLIAPTPTGSGKSLIGVAGI 75 Query: 99 LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 LW ++ G A + + + V + + + + Sbjct: 76 LWALAR--GGVAYYTAPLKALVSEKFFDLVD----LFGAANVGMITGDGSVNAAAPIICA 129 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII--NKSILGFFT 216 + + V DE D Sbjct: 130 TAEILANLALRWGDTL----------------DVDTVVMDEFHYYGDAERGWAWQAPLLL 173 Query: 217 ELNPNRFWIMTS 228 N + + Sbjct: 174 LPNTRFILMSAT 185 >gi|297571405|ref|YP_003697179.1| GTP-binding protein HSR1-related protein [Arcanobacterium haemolyticum DSM 20595] gi|296931752|gb|ADH92560.1| GTP-binding protein HSR1-related protein [Arcanobacterium haemolyticum DSM 20595] Length = 530 Score = 38.8 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 4/96 (4%) Query: 72 NSNPTIFKCAISAGRGIGKTTLNAWMM---LWLISTRPGMSIICIANSETQLKNTL-WAE 127 NP + AI+ G GK+++ ++ L ++ + A S Q + L W + Sbjct: 43 EHNPDVCVVAIAGSTGSGKSSIVNALIGENLARVAATRPTTAQPCAVSTVQAHDLLSWLD 102 Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163 +++ + F S + + + Sbjct: 103 ITQRFERPGLKDAFGATSDFVIVDLPDIDSTSAANR 138 >gi|260581112|ref|ZP_05848933.1| DNA helicase II [Haemophilus influenzae RdAW] gi|260092241|gb|EEW76183.1| DNA helicase II [Haemophilus influenzae RdAW] Length = 727 Score = 38.8 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 81/302 (26%), Gaps = 29/302 (9%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIA 114 E ++ ++ V + AG G GKT + + WLI+ SI+ + Sbjct: 6 ELLDGLNDKQREAVAAPLGNH---LVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 62 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 + S H+ + + +G+ + Sbjct: 63 FTNKAAAEMRHRIQSTLAKHAQHQLFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSE 122 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 + HN DE + P + + + Sbjct: 123 -DQLRLIKRLLKLHN-------FDEKAF-PPKQACWYINNKKDEGLR--------PNDIE 165 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294 + ++ ++ YQ +D + + +F V+ Sbjct: 166 DFNDRQEREWIKIYQIYQDTCDRAGLVDFAELLIRVYELFEKKPLILQRYQQRFQHILVD 225 Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354 F N I+ + + +++ D D++ + RG IE+I + Sbjct: 226 EFQDTNKIQYK-WIKILAGKTGQVMIVGD-----DDQS-IYGWRGAQIENIQKFLKDFKA 278 Query: 355 ET 356 ET Sbjct: 279 ET 280 >gi|291300875|ref|YP_003512153.1| DEAD/DEAH box helicase domain-containing protein [Stackebrandtia nassauensis DSM 44728] gi|290570095|gb|ADD43060.1| DEAD/DEAH box helicase domain protein [Stackebrandtia nassauensis DSM 44728] Length = 832 Score = 38.8 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 21/198 (10%), Positives = 46/198 (23%), Gaps = 27/198 (13%) Query: 44 PLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS 103 P FS W +E ++ + +S G GK+ + A + Sbjct: 13 PDAIFSAFTDWAVEAGFSLYD-AQEEAVMEIVSGNNVIVSTPTGSGKSLIAAGA--HFAA 69 Query: 104 TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163 + A + + + + + + + P + ++ Sbjct: 70 LSENRTSFYTAPIKALVSEKFFDLCELFGTDNVGMMTGDASVNADAPLICCTAEVLANIA 129 Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPN 221 Y + V DE PD + Sbjct: 130 FRDGDYADVGQ--------------------VVMDEFHFYAEPDRGWAWQVPLLELP--R 167 Query: 222 RFWIMTSNTRRLNGWFYD 239 +++ S T +F Sbjct: 168 TQFVLMSATLGDTSFFEK 185 >gi|222110400|ref|YP_002552664.1| ecoei r domain-containing protein [Acidovorax ebreus TPSY] gi|221729844|gb|ACM32664.1| EcoEI R domain protein [Acidovorax ebreus TPSY] Length = 827 Score = 38.8 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 25/214 (11%), Positives = 62/214 (28%), Gaps = 24/214 (11%) Query: 38 WGIKGKPLEHFS-----QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTT 92 W + + F P +QL + + + + + G GKT Sbjct: 147 WSAEESRIAGFDYAPNKTPRYYQLNAVNRAVEAIAAGQD-------RVLLVMATGTGKTY 199 Query: 93 LNAWMMLWLIST-RPGMSIICIANSETQLKNTL---WAEVSKWLSML-PHRHWFEM--QS 145 A+ ++W + I+ +A+ + T+ + ++ L P+ E Sbjct: 200 -TAFQIIWRLWKSGAKKRILFLADRNILIDQTMVNDFRPFKGAMAKLSPNAKGVERVDAQ 258 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYT----ITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 ++ + + + +D + T +EE + + + DE Sbjct: 259 GAVSVEDVDLAVNKTTKLVDKSYEIYLSLYQAVTGTEEERNIYKQFSPDFFDLIVVDECH 318 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 + + T +T+ + Sbjct: 319 RGSAAEDSAWRDILTYFAGATQIGLTATPKETKD 352 >gi|121594955|ref|YP_986851.1| EcoEI R domain-containing protein [Acidovorax sp. JS42] gi|120607035|gb|ABM42775.1| EcoEI R, C-terminal domain protein [Acidovorax sp. JS42] Length = 817 Score = 38.8 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 25/214 (11%), Positives = 62/214 (28%), Gaps = 24/214 (11%) Query: 38 WGIKGKPLEHFS-----QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTT 92 W + + F P +QL + + + + + G GKT Sbjct: 147 WSAEESRIAGFDYAPNKTPRYYQLNAVNRAVEAIAAGQD-------RVLLVMATGTGKTY 199 Query: 93 LNAWMMLWLIST-RPGMSIICIANSETQLKNTL---WAEVSKWLSML-PHRHWFEM--QS 145 A+ ++W + I+ +A+ + T+ + ++ L P+ E Sbjct: 200 -TAFQIIWRLWKSGAKKRILFLADRNILIDQTMVNDFRPFKGAMAKLSPNAKGVERVDAQ 258 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYT----ITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 ++ + + + +D + T +EE + + + DE Sbjct: 259 GAVSVEDVDLAVNKTTKLVDKSYEIYLSLYQAVTGTEEERNIYKQFSPDFFDLIVVDECH 318 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 + + T +T+ + Sbjct: 319 RGSAAEDSAWRDILTYFAGATQIGLTATPKETKD 352 >gi|269976795|ref|ZP_06183770.1| DEAD/DEAH box helicase domain protein [Mobiluncus mulieris 28-1] gi|269934992|gb|EEZ91551.1| DEAD/DEAH box helicase domain protein [Mobiluncus mulieris 28-1] Length = 920 Score = 38.8 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 20/192 (10%), Positives = 38/192 (19%), Gaps = 24/192 (12%) Query: 39 GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98 G G LE S W + H + G GK+ + + Sbjct: 16 GKLGDSLEVLSGFEAWAESTGRPLYPHQLEAAEHIILEDRHLIAPTPTGSGKSLIGVAGI 75 Query: 99 LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 LW ++ G A + + + V + + + + Sbjct: 76 LWALAR--GGVAYYTAPLKALVSEKFFDLVD----LFGAANVGMITGDGSVNAAAPIICA 129 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII--NKSILGFFT 216 + + V DE D Sbjct: 130 TAEILANLALRWGDTL----------------DVDTVVMDEFHYYGDAERGWAWQAPLLL 173 Query: 217 ELNPNRFWIMTS 228 N + + Sbjct: 174 LPNTRFILMSAT 185 >gi|313892421|ref|ZP_07826011.1| helicase C-terminal domain protein [Dialister microaerophilus UPII 345-E] gi|313119103|gb|EFR42305.1| helicase C-terminal domain protein [Dialister microaerophilus UPII 345-E] Length = 526 Score = 38.8 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 20/140 (14%), Positives = 40/140 (28%), Gaps = 12/140 (8%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q + + AV +N + I G+GKT A + I G ++ Sbjct: 4 RPYQEKAVNAV-------LNEWESGRKRTLIVMATGLGKTITFANIAKKRIEN--GERVL 54 Query: 112 CIANSE---TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 +A+ E Q K+ ++ + + + L + + + K Sbjct: 55 VLAHREELLEQAKDKIFKVANIFCAKEKANETCLNSFLPITVGSVQTLQKKSRLERFPKD 114 Query: 169 YTITCRTYSEERPDTFVGPH 188 Y T Sbjct: 115 YFKTIIVDEAHHALADSYQR 134 >gi|157374029|ref|YP_001472629.1| ATP-dependent RNA helicase SrmB [Shewanella sediminis HAW-EB3] gi|157316403|gb|ABV35501.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis HAW-EB3] Length = 408 Score = 38.8 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 25/238 (10%), Positives = 52/238 (21%), Gaps = 22/238 (9%) Query: 52 HRWQLEFMEAVDVH----CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107 LE ++A+ H A G GKT L + P Sbjct: 9 DPILLESLKAMGHHKPTTIQQQAIPLAMDQRDILARAPTGTGKTASFLLPALQHLIDFPR 68 Query: 108 M-----SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162 I+ + + E++ + E+ ++ +G Q Sbjct: 69 RFSGQARILILTPT---------RELASQIHRYASHLASELDFNTVIITGG-VPYGPQED 118 Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222 + + + + DEA D+ + + + R Sbjct: 119 ALKGNVDILVATPGRLMEYLDKGQFNAEEVEMLVIDEADRMLDMGFSAAVETLAIESVGR 178 Query: 223 FWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280 M + + L D + + + I Sbjct: 179 KQTMLFSATLEGSDVGRFSHQLLTDPVKVE---AEAPRSEKAKIHQWIHIADNKDHKF 233 >gi|156937309|ref|YP_001435105.1| Reverse gyrase [Ignicoccus hospitalis KIN4/I] gi|156566293|gb|ABU81698.1| Reverse gyrase [Ignicoccus hospitalis KIN4/I] Length = 1259 Score = 38.8 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 9/118 (7%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 +I A G+GK+TL A + + +S + I + + + ++ +VS + Sbjct: 105 SIVAPTGMGKSTLGALLSV-YLSHKKKKKSYIIVPTTPLV-DMMFRKVSAFAEA------ 156 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 F ++++ H ++ E + S T S + N VF D Sbjct: 157 FGVRAVYFHSKMSPSQRKEMKERLLSGD-FDVLITTSRFLINNLDLLKNYEFGFVFVD 213 >gi|77552422|gb|ABA95219.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group] Length = 909 Score = 38.8 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 18/68 (26%) Query: 216 TELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGL 275 + NTR +G+ F+ P +W + F + + Sbjct: 110 AGQTSKFANVTIGNTRDGSGYGRTGFHCPNGEWVTCFCSWCWHGRSEVYFGKDRAAEERA 169 Query: 276 DSDVARIE 283 R E Sbjct: 170 ACPFYRQE 177 >gi|113969134|ref|YP_732927.1| ATP-dependent RNA helicase SrmB [Shewanella sp. MR-4] gi|113883818|gb|ABI37870.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4] Length = 420 Score = 38.8 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 21/219 (9%), Positives = 46/219 (21%), Gaps = 20/219 (9%) Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-----SIICIANSET 118 A G GKT L + P ++ + + Sbjct: 25 TTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQHLIDFPRRYSGQARVLILTPT-- 82 Query: 119 QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 E++ + H Q L++ Q + + Sbjct: 83 -------RELASQIHRYAC-HLATDQGLNIAIITGGVPYAPQEEALKGNIDILVATPGRL 134 Query: 179 ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT-ELNPNRFWIMTSNTRRLNGWF 237 + DEA D+ +++ E + ++ S T +G Sbjct: 135 MEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQNMLFSATLEGSGVI 194 Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLD 276 + + + + I Sbjct: 195 RFAREVLNDPIEID----VDAPRKEKAKIHQWIHLADDK 229 >gi|194769264|ref|XP_001966726.1| GF19127 [Drosophila ananassae] gi|190618247|gb|EDV33771.1| GF19127 [Drosophila ananassae] Length = 1004 Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 28/207 (13%), Positives = 58/207 (28%), Gaps = 22/207 (10%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 +++A RG GK+ + + ++I + L L+ V K L ++ Sbjct: 275 MSLTAARGRGKSAAL-GLSIAAAVAFGYVNIYVTSPHPENLIT-LFEFVLKGFDALEYQE 332 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + + ++ ++ S+ + V DE Sbjct: 333 HADYTIIRSTNAEYKKAIIRINITRSSRQTIQYIAPSDTHLLNAAD--------LVLIDE 384 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 A+ P L ++ M S Y+ L Q+ Sbjct: 385 AAAIP-------LPLVKKMIGPCLIFMASTING-----YEGTGRSLSLKLISQLQKENNA 432 Query: 260 GIDSGFHEGIISRYGLDSDVARIEILG 286 E I + D + I +L Sbjct: 433 RPPLKLEESIRYQDNDDVEKWLINLLC 459 >gi|164654858|ref|YP_001531172.2| Nonstructural protein NS3 [Dengue virus 3] Length = 619 Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 30/185 (16%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 197 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 250 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA D Sbjct: 251 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHF-TDP 292 Query: 207 INKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDS 263 + + G+ + MT+ F ++ + + Sbjct: 293 ASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGN--- 349 Query: 264 GFHEG 268 + Sbjct: 350 EWITD 354 >gi|269954927|ref|YP_003324716.1| Superfamily I DNA and RNA helicase and helicase subunits-like protein [Xylanimonas cellulosilytica DSM 15894] gi|269303608|gb|ACZ29158.1| Superfamily I DNA and RNA helicase and helicase subunits-like protein [Xylanimonas cellulosilytica DSM 15894] Length = 1324 Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 20/174 (11%), Positives = 43/174 (24%), Gaps = 10/174 (5%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL-SMLPHR 138 A+ G GKT L A ++ + R + +A S ++N L V L L + Sbjct: 947 LAVQGPPGTGKTYLAARVIR-TLVERHHWRVGVVAQSHAVVENVLDGVVGAGLDRDLVGK 1005 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + ++ + + + + + + + D + D Sbjct: 1006 QPGDPEADLVFTAVPRKGYAAFADERATSGFVLGGTAWDFVAADR---VPRRSLDLLVVD 1062 Query: 199 EASGTP-----DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED 247 EA + + + D Sbjct: 1063 EAGQYSLGTTIAASVAARNLLLLGDPQQLPQVSQGTHPEPVDTSALGWVSAGHD 1116 >gi|330872555|gb|EGH06704.1| putative ATP-binding protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 660 Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 14/120 (11%), Positives = 37/120 (30%), Gaps = 6/120 (5%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT + A L L P ++ + ++ +K+ + + + + + Sbjct: 225 GSGKTLIAANRALILARRFPDQQVLMLIHNVPVVKDLKHRLQRVYGEIPAN---LTIITA 281 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + L Q + +++ + + + + DE + D Sbjct: 282 LSWIKKQWRTLFIQHPKMPNRNKEVESLIQHFKDLEYPDLKPGKA---LLIDEFNFINDT 338 >gi|326484576|gb|EGE08586.1| DNA replication ATP-dependent helicase dna2 [Trichophyton equinum CBS 127.97] Length = 1596 Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 32/120 (26%), Gaps = 7/120 (5%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS--MLPHRHWFEMQ 144 G GKTT A ++ G S++ + + T + N L L + Sbjct: 1094 GTGKTTTIAQII--RALVSQGKSVLLTSYTHTAVDNILLKIRDDKFRILRLGTPSKVHPE 1151 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + + ++ + T + DEAS Sbjct: 1152 VQQFAEMAATPKNTIEELEDSYENSKVVATTCLGVNH---RIFNTRTFDYCIVDEASQIT 1208 >gi|326475655|gb|EGD99664.1| DNA replication helicase Dna2 [Trichophyton tonsurans CBS 112818] Length = 1596 Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 32/120 (26%), Gaps = 7/120 (5%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS--MLPHRHWFEMQ 144 G GKTT A ++ G S++ + + T + N L L + Sbjct: 1094 GTGKTTTIAQII--RALVSQGKSVLLTSYTHTAVDNILLKIRDDKFRILRLGTPSKVHPE 1151 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + + ++ + T + DEAS Sbjct: 1152 VQQFAEMAATPKNTIEELEDSYENSKVVATTCLGVNH---RIFNTRTFDYCIVDEASQIT 1208 >gi|302663024|ref|XP_003023160.1| hypothetical protein TRV_02682 [Trichophyton verrucosum HKI 0517] gi|291187142|gb|EFE42542.1| hypothetical protein TRV_02682 [Trichophyton verrucosum HKI 0517] Length = 1596 Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 32/120 (26%), Gaps = 7/120 (5%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS--MLPHRHWFEMQ 144 G GKTT A ++ G S++ + + T + N L L + Sbjct: 1094 GTGKTTTIAQII--RALVSQGKSVLLTSYTHTAVDNILLKIRDDKFRILRLGTPSKVHPE 1151 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + + ++ + T + DEAS Sbjct: 1152 VQQFAEMAATPKNTIEELEDSYENSKVVATTCLGVNH---RIFNTRTFDYCIVDEASQIT 1208 >gi|302502578|ref|XP_003013253.1| hypothetical protein ARB_00438 [Arthroderma benhamiae CBS 112371] gi|291176816|gb|EFE32613.1| hypothetical protein ARB_00438 [Arthroderma benhamiae CBS 112371] Length = 1597 Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 32/120 (26%), Gaps = 7/120 (5%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS--MLPHRHWFEMQ 144 G GKTT A ++ G S++ + + T + N L L + Sbjct: 1095 GTGKTTTIAQII--RALVSQGKSVLLTSYTHTAVDNILLKIRDDKFRILRLGTPSKVHPE 1152 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + + ++ + T + DEAS Sbjct: 1153 VQQFAEMAATPKNTIEELEDSYENSKVVATTCLGVNH---RIFNTRTFDYCIVDEASQIT 1209 >gi|300361581|ref|ZP_07057758.1| possible type I site-specific deoxyribonuclease [Lactobacillus gasseri JV-V03] gi|300354200|gb|EFJ70071.1| possible type I site-specific deoxyribonuclease [Lactobacillus gasseri JV-V03] Length = 1086 Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 20/150 (13%), Positives = 50/150 (33%), Gaps = 15/150 (10%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q+E +++++ + ++ G GKT +M L+ + I+ Sbjct: 386 RDYQVEAIKSIEEAIKDGKK-------RILLAMATGTGKTRTAIALMYRLLKHKRARRIL 438 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + + + + T A + L + + ++ L ++ ++ K Sbjct: 439 YLVDRNSLGQQTADAIKDNKIGNLSISNIYGVKELKDKLPDASTKIQIATVQGMIKRLFY 498 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 +EE+P + DEA Sbjct: 499 NDS--NEEKPSVGQY------DFIIVDEAH 520 >gi|222475988|ref|YP_002564509.1| type III restriction protein res subunit [Halorubrum lacusprofundi ATCC 49239] gi|222454359|gb|ACM58623.1| type III restriction protein res subunit [Halorubrum lacusprofundi ATCC 49239] Length = 466 Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 22/198 (11%), Positives = 50/198 (25%), Gaps = 39/198 (19%) Query: 38 WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97 + +P +Q ++A H ++ G GKT L Sbjct: 72 YPDLDLTQALHIEPRDYQQAALDAWIDHDRRG-----------SVVLPTGSGKTFLG--- 117 Query: 98 MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 G+S + + + +++W + L + + +L Sbjct: 118 --LQAIADAGVSTLVVTPTID--------LMNQWHATLTN--------------AFGDQL 153 Query: 158 LEQSMGIDSKHYTITCRTYSE-ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT 216 E + + +T T + + +V + + DE P + I Sbjct: 154 TEPVGVLGGGSHDVTAITVTTYDSAYRYVNEYGDQFGLLVVDEEHHLPAPTYRQIPEMII 213 Query: 217 ELNPNRFWIMTSNTRRLN 234 + Sbjct: 214 APYRLGLTATYERPDGKH 231 >gi|192359134|ref|YP_001980830.1| DbpA RNA binding domain family [Cellvibrio japonicus Ueda107] gi|190685299|gb|ACE82977.1| DbpA RNA binding domain family [Cellvibrio japonicus Ueda107] Length = 469 Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 23/196 (11%), Positives = 49/196 (25%), Gaps = 18/196 (9%) Query: 81 AISAGR--------GIGKTTLNAWMMLWLISTRPGM-SIICIANSETQLKNTLWAEVSKW 131 + AGR G GKT +L + + + + +L + + E+ + Sbjct: 48 WVLAGRDLIAQAKTGSGKTAAFGIGLLEKLQVDSFAVQALVLCPT-RELADQVAKELRRL 106 Query: 132 LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTH 191 F L G A + ++ + + H Sbjct: 107 AR-------FTHNIKILTLCGGVAIGPQLG-SLERGAHIVVGTPGRIVDHLRKGSLHLDR 158 Query: 192 GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY 251 + DEA D+ + + + + + + Sbjct: 159 LQQLVLDEADRMLDMGFADDINTVIASANSERQTLLFSATYPANIQQMSARYQRDPVRVT 218 Query: 252 QIDTRTVEGIDSGFHE 267 T + I F+E Sbjct: 219 VESLHTSQQIRQHFYE 234 >gi|156549148|ref|XP_001607707.1| PREDICTED: similar to MGC148591 protein [Nasonia vitripennis] Length = 1028 Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 30/251 (11%), Positives = 69/251 (27%), Gaps = 28/251 (11%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + + S +++A RG GK+ + ++ +I + Sbjct: 254 QAKVLLKFIEAISEKTLRST-----ISLTAARGRGKSAALGLAIAGAVAFGY-SNIYITS 307 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 S LK + +SK L ++ + + + + ++ D + Sbjct: 308 PSPENLKTV-FEFISKGFEALNYQEHTDYEFFQSTNPEFNQATIRVNVFRDHRQTIQYIH 366 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 + + + DEA+ P K++LG + F T N Sbjct: 367 PTDAKGKLSLA-------ELLVIDEAAAIPLPHVKAMLGPYLT-----FMASTINGYEGT 414 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF----HEGIISRYGLDSDVARI-----EIL 285 G + + + Q ++ + D + + R + L Sbjct: 415 GRSLTLKLLNQLRAQTVQTNSVNKQEKDLMAKAVIGRELQELVLEEPIRYRAGDSIEKWL 474 Query: 286 GQFPQQEVNNF 296 + Sbjct: 475 CDLLCLDATTV 485 >gi|119357244|ref|YP_911888.1| CRISPR-associated helicase Cas3 [Chlorobium phaeobacteroides DSM 266] gi|119354593|gb|ABL65464.1| CRISPR-associated helicase, Cas3 family [Chlorobium phaeobacteroides DSM 266] Length = 667 Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 46/181 (25%), Gaps = 17/181 (9%) Query: 39 GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98 G P+ + E + C + P +F + G GKT + Sbjct: 147 GALDTPVNRA------RKEILRE----CRDKGRSLEPGLFSLTV--PTGGGKTLASMAFA 194 Query: 99 LWLISTRPGMSIICIANSETQLKNT--LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156 L II + ++ T ++ EV ++L H + + Sbjct: 195 LEHAIRHGKKRIIVAIPYTSIIEQTAAVYREVFGDDTVLEHHSNLDPARETAESRLATEN 254 Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT 216 + + + HN V DE P + I+ Sbjct: 255 WDAPIIVTTNVQLFESLFAAR---SSACRKLHNIVNSVVVLDETQMLPTDFLQPIVSVIK 311 Query: 217 E 217 Sbjct: 312 S 312 >gi|33300854|ref|NP_877482.1| putative DNA maturase B [Pseudomonas phage phiKMV] gi|195546750|ref|YP_002117828.1| DNA maturase B [Pseudomonas phage PT2] gi|33284825|emb|CAD44234.1| putative DNA maturase B [Enterobacteria phage phiKMV] gi|165880759|gb|ABY71014.1| DNA maturase B [Pseudomonas phage PT2] Length = 601 Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 21/168 (12%), Positives = 48/168 (28%), Gaps = 17/168 (10%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + + N K ++A RG K+T+ ++W I+ P + ++ S + Sbjct: 41 DIADFMQDSPN-------KAMVAAQRGEAKSTIACIYVVWCITQNPATRAMLVSGSGDKA 93 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLS-LHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 + L + L+ L P + + + ++ S Sbjct: 94 EEN---------GQLITKLIMHWDLLAYLRPEARMGDRTSATSFDVNWALKGVEKSASIN 144 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227 + D+ T + + + T + I T Sbjct: 145 CIGITAALQGYRADILIPDDIETTKNGLTATERAKLTRQSQEFTSICT 192 >gi|269216046|ref|ZP_06159900.1| conserved hypothetical protein [Slackia exigua ATCC 700122] gi|269130305|gb|EEZ61383.1| conserved hypothetical protein [Slackia exigua ATCC 700122] Length = 402 Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 21/175 (12%), Positives = 48/175 (27%), Gaps = 27/175 (15%) Query: 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG-MSII- 111 ++ E + + + P F + R GK+T +W I+ Sbjct: 13 YEREIVSTIA------SRMNEPRRFMQIVMGPRQTGKST-----AIWQALAHADIPRIVE 61 Query: 112 ----------CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL---L 158 + + +N + + + + ++ + ++ W + + Sbjct: 62 EVTFRGESPDWVRAHWQRARNLIQGDQKRAV-LVLDEIQYVSNWSAVVKELWDEDARAGI 120 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213 + + + T+ SE F H H EA G G Sbjct: 121 DLRVVLSGSSATLIQNGLSESLAGRFELIHCPHWTYQECREAFGYSLDEFLYFGG 175 >gi|262375118|ref|ZP_06068352.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter lwoffii SH145] gi|262310131|gb|EEY91260.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter lwoffii SH145] Length = 593 Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 22/154 (14%), Positives = 36/154 (23%), Gaps = 18/154 (11%) Query: 62 VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLK 121 + IS G G GKT A M+ L P + I A + + Sbjct: 125 LSDPQQKLALEMVARQALNIISGGPGTGKTYTLAHMIAVLHEALPNIRIAMAAPTGKAAQ 184 Query: 122 NTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP 181 L E + L +G + + Sbjct: 185 ----RMKEALQKALHSEALQEFELEQLKQLQPVTLHRLLGLGTRGQPRFHAKQPLP---- 236 Query: 182 DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 + DEAS +++ +L Sbjct: 237 ----------YDVIVVDEASMLDLNLSQMLLAAV 260 >gi|89274860|gb|ABD65875.1| polyprotein [Dengue virus 3] Length = 3390 Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 22/184 (11%), Positives = 44/184 (23%), Gaps = 28/184 (15%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ R + + +A + + AE+ + L LP R+ Sbjct: 1670 GSGKTRKYLPAIVREAIKRR-LRTLILAPTR-----VVAAEMEEALKGLPIRYQTTATKS 1723 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 E + T P + + DEA T Sbjct: 1724 ------------EHTGREIVDLMCHATFTMRLLSP-----VRVPNYNLIIMDEAHFTDPA 1766 Query: 207 INKS--ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264 + + + MT+ F ++ + + Sbjct: 1767 SIPARGYISTRVGMGETAAIFMTATPPGTTEAFPQSNAPIQDEERDIPERSWNSGN---E 1823 Query: 265 FHEG 268 + Sbjct: 1824 WITD 1827 >gi|332363219|gb|EGJ41004.1| hypothetical protein HMPREF9380_0379 [Streptococcus sanguinis SK49] Length = 892 Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 21/197 (10%), Positives = 46/197 (23%), Gaps = 24/197 (12%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q +E + + ISA G GKTTL + R + Sbjct: 11 RDYQKRILERSRDYMADGQVH---------ISAAPGSGKTTLGIEFI-----RRFDKPAL 56 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + + ++ + + P + +++ Sbjct: 57 ILVPTI-TIREQWADRIKTAFLSHASEAERLVSQDLKTPKMITIATYQALHSALTQYKVK 115 Query: 172 TCRTYSEER-PDTFVGPHNT--------HGMAVFNDEASGTPDIINKSILGFFTELNPNR 222 EE + + DE + KS+ F + + Sbjct: 116 LSNLSEEEVLAENVDFSQFDLVNKLQEIGLGTLCLDECHHLRNEWWKSLEEFRDKYSQLN 175 Query: 223 FWIMTSNTRRLNGWFYD 239 +T+ + Sbjct: 176 LIALTATPPYDSEPALW 192 >gi|251792312|ref|YP_003007037.1| type III restriction enzyme, res subunit family [Aggregatibacter aphrophilus NJ8700] gi|247533704|gb|ACS96950.1| type III restriction enzyme, res subunit family [Aggregatibacter aphrophilus NJ8700] Length = 762 Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 16/144 (11%), Positives = 40/144 (27%), Gaps = 2/144 (1%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN 115 +F + + + + + G GKT + + + P + Sbjct: 7 KDFQQQTVDFLLEKTTEQHKKQQQIIVKSPTGSGKTIILISYIENYLRNYPNTIFCWFSV 66 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 + L+ ++ ++ LP + ++ + Y E + + R Sbjct: 67 GKGDLEEQSKEKMERFSPTLPTGNIADVLNQGFECGTTYFINWETITKKGNLALKDSERK 126 Query: 176 YSEERPDTFVGPHNTHGMAVFNDE 199 ++ N V DE Sbjct: 127 NIKQHI--ADAHRNNKQFIVIIDE 148 >gi|126303557|ref|XP_001373679.1| PREDICTED: similar to activating signal cointegrator 1 complex subunit 3-like 1 isoform 2 [Monodelphis domestica] Length = 2138 Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 15/161 (9%) Query: 54 WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q +F + + V NS+ +F + A G GKT + +L ++ + Sbjct: 1323 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1379 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 I E + W R + + Sbjct: 1380 YITPMEALAEQVY----MDWYEKFQDRL------NKKVVLLTGETSTDLKLLGKGNIIIS 1429 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212 T + + + DE + Sbjct: 1430 TPEKWDILSRRWKQRKNVQNVNLFVVDEVHLIGGENGPVLE 1470 >gi|126303555|ref|XP_001373661.1| PREDICTED: similar to activating signal cointegrator 1 complex subunit 3-like 1 isoform 1 [Monodelphis domestica] Length = 2136 Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 15/161 (9%) Query: 54 WQLEF--MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q +F + + V NS+ +F + A G GKT + +L ++ + Sbjct: 1321 YQDKFPFFNPIQTQVFNTVYNSDDNVF---VGAPTGSGKTICAEFAILRMLLQNSEGRCV 1377 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 I E + W R + + Sbjct: 1378 YITPMEALAEQVY----MDWYEKFQDRL------NKKVVLLTGETSTDLKLLGKGNIIIS 1427 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212 T + + + DE + Sbjct: 1428 TPEKWDILSRRWKQRKNVQNVNLFVVDEVHLIGGENGPVLE 1468 >gi|8778728|gb|AAF79736.1|AC005106_17 T25N20.11 [Arabidopsis thaliana] Length = 1048 Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 24/165 (14%), Positives = 48/165 (29%), Gaps = 18/165 (10%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ L +T+ ++ A S + + L + + F + + Sbjct: 470 GTGKTMTLVEAIVQLYTTQRNARVLVCAPSNSAADHILEKLLCLEGVRIKDNEIFRLNAA 529 Query: 147 SLHPSGWYAELLE-------------QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + E++ K T + S + H TH + Sbjct: 530 TRSYEEIKPEIIRFCFFDELIFKCPPLKALTRYKLVVSTYMSASLLNAEGVNRGHFTHIL 589 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 DEA + N + ++ + R+L Y Sbjct: 590 L---DEAGQASEPENMIAVSNLCL--TETVVVLAGDPRQLGPVIY 629 >gi|15220521|ref|NP_172037.1| SDE3 (SILENCING DEFECTIVE); RNA helicase [Arabidopsis thaliana] gi|50401594|sp|Q8GYD9|SDE3_ARATH RecName: Full=Probable RNA helicase SDE3; AltName: Full=Silencing defective protein 3 gi|26450472|dbj|BAC42350.1| unknown protein [Arabidopsis thaliana] gi|332189722|gb|AEE27843.1| putative RNA helicase SDE3 [Arabidopsis thaliana] Length = 1002 Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 24/165 (14%), Positives = 48/165 (29%), Gaps = 18/165 (10%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT ++ L +T+ ++ A S + + L + + F + + Sbjct: 424 GTGKTMTLVEAIVQLYTTQRNARVLVCAPSNSAADHILEKLLCLEGVRIKDNEIFRLNAA 483 Query: 147 SLHPSGWYAELLE-------------QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + E++ K T + S + H TH + Sbjct: 484 TRSYEEIKPEIIRFCFFDELIFKCPPLKALTRYKLVVSTYMSASLLNAEGVNRGHFTHIL 543 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFY 238 DEA + N + ++ + R+L Y Sbjct: 544 L---DEAGQASEPENMIAVSNLCL--TETVVVLAGDPRQLGPVIY 583 >gi|297793665|ref|XP_002864717.1| hypothetical protein ARALYDRAFT_919354 [Arabidopsis lyrata subsp. lyrata] gi|297310552|gb|EFH40976.1| hypothetical protein ARALYDRAFT_919354 [Arabidopsis lyrata subsp. lyrata] Length = 2112 Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 11/80 (13%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L FS + Q + + + + A G GKT ML L ST Sbjct: 1306 LYKFSHFNPIQTQIFHVLYHTDN-----------NVLVGAPTGSGKTISAELAMLRLFST 1354 Query: 105 RPGMSIICIANSETQLKNTL 124 +P M ++ IA + ++ + Sbjct: 1355 QPDMKVVYIAPLKAIVRERM 1374 >gi|92116726|ref|YP_576455.1| DEAD/DEAH box helicase-like [Nitrobacter hamburgensis X14] gi|91799620|gb|ABE61995.1| DEAD/DEAH box helicase-like protein [Nitrobacter hamburgensis X14] Length = 858 Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 12/143 (8%), Positives = 35/143 (24%), Gaps = 13/143 (9%) Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 H + + A++A GK+ + + + +I+ I + + Sbjct: 140 THYQFGLWRRLVAGERVAVAAPTSAGKSFVLQNFIAARLEGSSPQTIVYIVPTRALIAQV 199 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 + ++ ++ + + + ++ Sbjct: 200 SADVRKLLIIDDGTSGDVDVITVPVEAGQPLPRRAIYVLTQERLRMMLSAHPT------- 252 Query: 184 FVGPHNTHGMAVFNDEASGTPDI 206 H + DEA D Sbjct: 253 ------FHAQIIIVDEAHSVGDG 269 >gi|30697481|ref|NP_200922.2| DEAD box RNA helicase, putative [Arabidopsis thaliana] gi|332010042|gb|AED97425.1| U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] Length = 2146 Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 11/80 (13%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L FS + Q + + + + A G GKT ML L ST Sbjct: 1339 LYKFSHFNPIQTQIFHVLYHTDN-----------NVLVGAPTGSGKTISAELAMLRLFST 1387 Query: 105 RPGMSIICIANSETQLKNTL 124 +P M ++ IA + ++ + Sbjct: 1388 QPDMKVVYIAPLKAIVRERM 1407 >gi|9759460|dbj|BAB10376.1| RNA helicase [Arabidopsis thaliana] gi|332010043|gb|AED97426.1| U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] Length = 2157 Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 11/80 (13%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L FS + Q + + + + A G GKT ML L ST Sbjct: 1350 LYKFSHFNPIQTQIFHVLYHTDN-----------NVLVGAPTGSGKTISAELAMLRLFST 1398 Query: 105 RPGMSIICIANSETQLKNTL 124 +P M ++ IA + ++ + Sbjct: 1399 QPDMKVVYIAPLKAIVRERM 1418 >gi|330957698|gb|EGH57958.1| ATP-dependent DNA helicase DinG [Pseudomonas syringae pv. maculicola str. ES4326] Length = 714 Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 27/101 (26%), Gaps = 5/101 (4%) Query: 51 PHRWQL----EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 P Q E + + A+ AG G GKT A + Sbjct: 25 PRYGQRLMIAEVARVLGDIDTDEEGRRSGDPAVVAVEAGTGTGKTVAYAIASIPTAKAAG 84 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147 +I A Q + ++ ++ + F + Sbjct: 85 KRLVIATATVALQ-EQIVYKDLPDLMRNSGLNFTFALAKGR 124 >gi|313611711|gb|EFR86253.1| phage terminase, large subunit, pbsx family [Listeria monocytogenes FSL F2-208] Length = 466 Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 23/256 (8%), Positives = 68/256 (26%), Gaps = 28/256 (10%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 GR K+++ + ++ P +++C+ L +++ ++ L + Sbjct: 59 IIAKGGRSSMKSSVISLKLVEKKMANPQSNMVCLRKVANTLYKSVYQQIKWALYEMGVAD 118 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 F+ + + + + + P + ++ +E Sbjct: 119 QFKFGKSPMEI-----------IHKEWGTGFYFSGCDDPAKLKSMKIPVG-YVSGLWFEE 166 Query: 200 AS------GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL--EDWKRY 251 + + + I + ++ + R W + + +D+ + Sbjct: 167 LAEFSGVTDIDVVEDTFIREDLPDGQEVTIYMSFNPPRNPYEWVNEYVDSKRSDDDYLIH 226 Query: 252 QIDTRT--VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE 309 + + I D D R LG+ N + + Sbjct: 227 HTTYLDDEKGFLSKQIIKKIEKYKKNDLDYYRWMYLGEVIGLGDNVY------NMNLFHP 280 Query: 310 AIDDLYAPLIMGCDIA 325 ++ D A Sbjct: 281 LKAIPADDRLILIDFA 296 >gi|325983747|ref|YP_004296148.1| P-type conjugative transfer ATPase TrbB [Nitrosomonas sp. AL212] gi|325533266|gb|ADZ27986.1| P-type conjugative transfer ATPase TrbB [Nitrosomonas sp. AL212] Length = 319 Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 19/52 (36%) Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 + + + G G GKTTL ++ ++ P I + ++ Sbjct: 138 RDVIKEAVRKHRNILVIGGTGSGKTTLINAIINEMVLCDPDERIFILEDTGE 189 >gi|322504579|emb|CAM37954.2| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 1080 Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 10/125 (8%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 C ++AGRG GK+ M + + +I+C A + + TL+ + L L +R Sbjct: 305 CVVTAGRGRGKSAAL-GMTVAGAIAQGYSNIMCTAPTPENV-QTLFEFAIRGLKELGYRE 362 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + ++L + + ++ + + DE Sbjct: 363 RTDFEALQGVSEEFAKCFIRINVFREHRQTLQFVSAT--------DTAKFAQAEVCVIDE 414 Query: 200 ASGTP 204 A+ P Sbjct: 415 AAALP 419 >gi|146329169|ref|YP_001209947.1| hypothetical protein DNO_1061 [Dichelobacter nodosus VCS1703A] gi|146232639|gb|ABQ13617.1| conserved hypothetical protein [Dichelobacter nodosus VCS1703A] Length = 477 Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 5/111 (4%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW--AEVSKWLSMLPHRH 139 I RG GK+TL A ++WL+ I+ +A + L V ++L LP Sbjct: 132 ILGARGTGKSTLLAEKIIWLVQQNIAP-ILVVAPFLANINRILTLPQSVQRFLRFLPPDE 190 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR--TYSEERPDTFVGPH 188 + + H A + + H+ T +E + H Sbjct: 191 ACRLLPTAQHLIIDEAAACAPAQLLQLCHHYSNFTLATTTEGYEGSANTFH 241 >gi|170720332|ref|YP_001748020.1| ATP-dependent DNA helicase DinG [Pseudomonas putida W619] gi|169758335|gb|ACA71651.1| helicase c2 [Pseudomonas putida W619] Length = 714 Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 19/184 (10%), Positives = 49/184 (26%), Gaps = 17/184 (9%) Query: 51 PHRWQL----EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 P Q E + + + A+ AG G GKT + + + Sbjct: 25 PRYGQRLMIAEVAKVLGDIACDDEGRRAGEPAVVAVEAGTGTGKTVAYS-LAAIPAAKAA 83 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 G ++ + + ++ ++ + F + + + + Sbjct: 84 GKRLVIATATVALQEQIVFKDLPDLMRSSGLNFSFALAKGRGR---YLCLSKLDILLQEG 140 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG---------TPDIINKSILGFFTE 217 + T + + EE V + ++ +G P+ + T Sbjct: 141 HAQSATAQLFEEEGFHIEVDERSQKLFNSMIEKLAGNRWDGDRDSWPEALEDQDWARLTT 200 Query: 218 LNPN 221 + Sbjct: 201 DHSQ 204 >gi|158345070|ref|YP_001522835.1| putative DNA maturase B [Pseudomonas phage LKD16] gi|114796423|emb|CAK25979.1| putative DNA maturase B [Pseudomonas phage LKD16] Length = 601 Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 31/260 (11%), Positives = 68/260 (26%), Gaps = 28/260 (10%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + + N K ++A RG K+T+ ++W I P + ++ S + Sbjct: 41 DIADFMQDSPN-------KAMVAAQRGEAKSTIACIYVVWCIVRDPRTRAMLVSGSGDKA 93 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLS-LHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 + L + L+ L P + + + ++ S Sbjct: 94 EEN---------GQLITKLIMHWDLLAYLRPEARMGDRTSATSFDVNWALKGVEKSASIN 144 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT-------SNTRR 232 + D+ T + + + T + I T + Sbjct: 145 CIGITAALQGYRADILIPDDIETTKNGLTATERAKLTRQSQEFTSICTHGKILYLGTPQS 204 Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292 + +P + R +D G + +AR+E G P+ Sbjct: 205 RESIYN---GLPARGFLMRIWPGRF-PTLDEQERYGDWLAPSILERIARLEERGHNPRTG 260 Query: 293 VNNFIPHNYIEEAMSREAID 312 + + D Sbjct: 261 KGLDGTRGWAADPQRYNEED 280 >gi|109898646|ref|YP_661901.1| DEAD/DEAH box helicase-like [Pseudoalteromonas atlantica T6c] gi|109700927|gb|ABG40847.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica T6c] Length = 426 Score = 38.8 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 27/199 (13%), Positives = 58/199 (29%), Gaps = 20/199 (10%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGM------SIICIANSETQLKNTLWAEVSKWLS 133 SA G GKT A +L + +P + + + E+++ L+ Sbjct: 41 VLASAQTGTGKTAAFAVPILQQMLNKPKKTTPGTPRALILTPT---------RELAEQLA 91 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 ++ + +S+ +L Q+ + + + T + Sbjct: 92 TNIA-NYAKFTDISVTALYGGVKLGGQASKLSAGVDIVISTPGRLLEHMTLKNVELANVE 150 Query: 194 AVFNDEASGTPDIINKS----ILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWK 249 V DEA D+ + +L T + + T + + N Sbjct: 151 FVVLDEADRMLDMGFIADVRQMLAQITSAHQTLLFSATISPTVNELAHKLLKNHQEIRAT 210 Query: 250 RYQIDTRTVEGIDSGFHEG 268 + TV+ + E Sbjct: 211 QLNSAADTVQHVMYPVSEE 229 >gi|317486294|ref|ZP_07945126.1| PhoH-like protein [Bilophila wadsworthia 3_1_6] gi|316922464|gb|EFV43718.1| PhoH-like protein [Bilophila wadsworthia 3_1_6] Length = 326 Score = 38.8 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 38/129 (29%), Gaps = 14/129 (10%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT L M + +++ R II + + L + + Sbjct: 135 GTGKTYLAVAMAVHMLNARRVRRIILTRPA------------VEAGEKLGFLPGDLAEKV 182 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + + + L M K ++ E P F+ + + DEA T Sbjct: 183 NPYLRPLHDAL--LDMLGPQKMASLQETGIIEVAPLAFMRGRTLNDAFIILDEAQNTTRE 240 Query: 207 INKSILGFF 215 K L Sbjct: 241 QMKMFLTRL 249 >gi|148270656|ref|YP_001245116.1| UvrD/REP helicase [Thermotoga petrophila RKU-1] gi|170289362|ref|YP_001739600.1| UvrD/REP helicase [Thermotoga sp. RQ2] gi|281412966|ref|YP_003347045.1| UvrD/REP helicase [Thermotoga naphthophila RKU-10] gi|147736200|gb|ABQ47540.1| UvrD/REP helicase [Thermotoga petrophila RKU-1] gi|170176865|gb|ACB09917.1| UvrD/REP helicase [Thermotoga sp. RQ2] gi|281374069|gb|ADA67631.1| UvrD/REP helicase [Thermotoga naphthophila RKU-10] Length = 648 Score = 38.8 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 45/304 (14%), Positives = 89/304 (29%), Gaps = 22/304 (7%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 E+ +P L F+E +D V S +C + AG G GKT + + + +L++ Sbjct: 3 EYRIRPKEANLSFLEDLDEEQRKAVVESEG---RCIVIAGPGSGKTRVITYKIAYLLANG 59 Query: 106 -PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 I+ + + + + + L + + YA + Sbjct: 60 VDPSRILLVTFTRAAAREMVERAKTVTGRELSEMLAGTFHHVCNYFLRKYAPYVGLERNY 119 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224 R P ++ L R Sbjct: 120 SILDREDAESLMRHARSKYLERKSKEERKNF------PQPSVLMAIYSYMKNTLKSLRES 173 Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEI 284 I+ N + F D+ E + Y+ + R+ +D R ++ R Sbjct: 174 IVVKNPK-----FLDLKEEISEIFDLYEQEKRSQNVVDYEDLLFYAYRLLEENKEIRDRE 228 Query: 285 LGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEH 344 +F V+ F NY++ + ++ G D + RG E+ Sbjct: 229 AERFLWVLVDEFQDTNYVQYRIVEHLSSKHGN--VLAV-----GDDAQSIYSFRGARYEN 281 Query: 345 IFDW 348 + D+ Sbjct: 282 VEDF 285 >gi|94994795|ref|YP_602893.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750] gi|94548303|gb|ABF38349.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750] Length = 542 Score = 38.8 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 24/195 (12%), Positives = 49/195 (25%), Gaps = 13/195 (6%) Query: 29 KNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME-AVDVHCHSNVNNSNPTIFKCAISAGRG 87 ++F+ + I+ K F QP+ QL + + + I++ + G Sbjct: 234 RSFLKHSYLAAIEQK-YASFGQPNN-QLNTIRTEIAERVKERGKRDSKGIYRLDL--PTG 289 Query: 88 IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW------- 140 GKT L+ + I + L+ +E+ K L Sbjct: 290 AGKTNLSMRYAFHQLVHHDKSRFFYITPFLSVLEQNA-SEIRKVTGDLGVLEHHSNVVKQ 348 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + + +T + + + V DE Sbjct: 349 ANEEDDDKDSLLSAYLSDSWDSQVVLTSMVQFFQTLFKTKSANLRRFSSLINSVVILDEV 408 Query: 201 SGTPDIINKSILGFF 215 P + Sbjct: 409 QSLPIEVTTLFNLTM 423 >gi|332229232|ref|XP_003263795.1| PREDICTED: Fanconi anemia group M protein isoform 1 [Nomascus leucogenys] Length = 2050 Score = 38.8 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 25/250 (10%), Positives = 67/250 (26%), Gaps = 19/250 (7%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + G+GKT + A +M P ++ +A ++ + ++ ++ Sbjct: 105 CNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQ----QIEACYQVMGI 160 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + + E+ + + P + Sbjct: 161 PQSHMAEMTGSTQAFTRKEIWCSKRVLFLTPQVMVNDLSRGACP-------AAEIKCLVI 213 Query: 198 DEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256 DEA + ++ + + + S T + I + ++ + Sbjct: 214 DEAHKALGNYAYCQVVRELVKYTNHFRILALSATP-GSDIKAVQQVITNLLIGQIELRSE 272 Query: 257 TVEGI---DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 I + + A + Q + ++ I N + M R+ + Sbjct: 273 DSPDILAYSHERKVEKLIVPLGEELAAIQKTYIQILESFAHSLIQRNVL---MRRDIPNL 329 Query: 314 LYAPLIMGCD 323 +I+ D Sbjct: 330 TKYQIILARD 339 >gi|297695020|ref|XP_002824758.1| PREDICTED: Fanconi anemia group M protein-like [Pongo abelii] Length = 1967 Score = 38.8 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 25/250 (10%), Positives = 67/250 (26%), Gaps = 19/250 (7%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 + G+GKT + A +M P ++ +A ++ + ++ ++ Sbjct: 105 CNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQ----QIEACYQVMGI 160 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + + E+ + + P + Sbjct: 161 PQSHMAEMTGSTQAFTRKEIWCSKRVLFLTPQVMVNDLSRGACP-------AAEIKCLVI 213 Query: 198 DEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256 DEA + ++ + + + S T + I + ++ + Sbjct: 214 DEAHKALGNYAYCQVVRELVKYTNHFRILALSATP-GSDIKAVQQVITNLLIGQIELRSE 272 Query: 257 TVEGI---DSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 I + + A + Q + ++ I N + M R+ + Sbjct: 273 DSPDILAYSHERKVEKLIVPLGEELAAIQKTYIQILESFAHSLIQRNVL---MRRDIPNL 329 Query: 314 LYAPLIMGCD 323 +I+ D Sbjct: 330 TKYQIILARD 339 >gi|238924846|ref|YP_002938362.1| putative helicase [Eubacterium rectale ATCC 33656] gi|238876521|gb|ACR76228.1| predicted helicase [Eubacterium rectale ATCC 33656] gi|291526018|emb|CBK91605.1| CRISPR-associated helicase, Cas3 family [Eubacterium rectale DSM 17629] gi|291527248|emb|CBK92834.1| CRISPR-associated helicase, Cas3 family [Eubacterium rectale M104/1] Length = 704 Score = 38.8 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 49/165 (29%), Gaps = 8/165 (4%) Query: 85 GRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKN--TLWAEVSKWLSMLPHRHWFE 142 G GKT + L II + + ++ ++ E+ ++L + + Sbjct: 230 PTGGGKTIASLAFALKHAVRHQMEHIIYVIPYTSIIEQNAQVFREILGQDNVLENHCNVD 289 Query: 143 M-QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 S L P +E ++ + + + S R HN V DEA Sbjct: 290 YGDSEELKPMQLASENWDKPVIVTTNVQFFESLFAS--RSSKCRKIHNIANSVVIFDEAQ 347 Query: 202 GTPDIINKSILGFFT---ELNPNRFWIMTSNTRRLNGWFYDIFNI 243 P K + + + T+ L+ F Sbjct: 348 MLPLEYLKPCIAMMENLMDFYRTSIVLCTATQPALDSIFDQHRRY 392 >gi|163748970|ref|ZP_02156221.1| Type I restriction enzyme EcoEI R protein [Shewanella benthica KT99] gi|161331346|gb|EDQ02234.1| Type I restriction enzyme EcoEI R protein [Shewanella benthica KT99] Length = 817 Score = 38.4 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 27/193 (13%), Positives = 53/193 (27%), Gaps = 32/193 (16%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST- 104 P +Q++ + N + + G GKT A+ ++W + Sbjct: 162 GSGKAPRYYQIQAINKTIEAISRQQN-------RILLVMATGTGKTY-TAFQIIWRLWKS 213 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 R I+ +A+ + L + K + +A+ Sbjct: 214 RQKKRILFLAD-----RTALIDQTKK------------NDFQPFGTAMTWAKNRTIDPAF 256 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA---SGTPDIINKSILGFFTELNPN 221 + T EE + + DE S D + IL +FT Sbjct: 257 EIHLALYQALTGPEEHQKAYKQVSQDFFDLIIIDECHRGSAADDSAWREILEYFTSATQ- 315 Query: 222 RFWIMTSNTRRLN 234 +T+ + Sbjct: 316 --IGLTATPKETE 326 >gi|167600489|ref|YP_001671988.1| terminase large subunit [Pseudomonas phage LUZ19] gi|161168352|emb|CAP45516.1| terminase large subunit [Pseudomonas phage LUZ19] Length = 601 Score = 38.4 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 21/168 (12%), Positives = 48/168 (28%), Gaps = 17/168 (10%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + + N K ++A RG K+T+ ++W I+ P + ++ S + Sbjct: 41 DIADFMQDSPN-------KAMVAAQRGEAKSTIACIYVVWCITQNPATRAMLVSGSGDKA 93 Query: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLS-LHPSGWYAELLEQSMGIDSKHYTITCRTYSEE 179 + L + L+ L P + + + ++ S Sbjct: 94 EEN---------GQLITKLIMHWDLLAYLRPEARMGDRTSATSFDVNWALKGVEKSASIN 144 Query: 180 RPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227 + D+ T + + + T + I T Sbjct: 145 CIGITAALQGYRADILIPDDIETTKNGLTATERAKLTRQSQEFTSICT 192 >gi|156934895|ref|YP_001438811.1| hypothetical protein ESA_02743 [Cronobacter sakazakii ATCC BAA-894] gi|156533149|gb|ABU77975.1| hypothetical protein ESA_02743 [Cronobacter sakazakii ATCC BAA-894] Length = 143 Score = 38.4 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 31/125 (24%), Gaps = 20/125 (16%) Query: 84 AGRGIGKTTLNAWMMLWLISTRPGMSI----ICIANSETQLKNTLWAEVSKWLSMLPHRH 139 GRG KT A M +I +C L+ + EV + + +P Sbjct: 29 GGRGSAKTRTFALMTAVRAYQAAEANISGVILCAREYMNSLEESSMEEVKQAIRSVP--- 85 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 W + + + R + + + DE Sbjct: 86 -------------WLDDYFDIGEKYIRTKNRRVSYVFCGLRHNLDSIKSKARILVAWVDE 132 Query: 200 ASGTP 204 A Sbjct: 133 AESVT 137 >gi|325978229|ref|YP_004287945.1| DNA endonuclease, type III restriction and modification system [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178157|emb|CBZ48201.1| DNA endonuclease, type III restriction and modification system [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 928 Score = 38.4 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 47/158 (29%), Gaps = 10/158 (6%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q + + N +F A G GKT L A ++L+L + + Sbjct: 49 RTYQDKAIRNYHYTQTQIKPNPQHVLFNMA----TGSGKTDLMAGLILYLYQEHGYRNFL 104 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS-----GWYAELLEQSMGIDS 166 N+ + L T V++ ++ E+ + + + + S Sbjct: 105 FTVNTNSVLMKTKDNLVNENSEKYLFQNKIEIDGKHIFIKQVERFPRIQQDNTIYIKLSS 164 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 +E N +AV DEA Sbjct: 165 VQKVSDDLFVLKENTMGLSDYENQ-PVAVLADEAHHYS 201 >gi|315042666|ref|XP_003170709.1| DNA replication ATP-dependent helicase dna2 [Arthroderma gypseum CBS 118893] gi|311344498|gb|EFR03701.1| DNA replication ATP-dependent helicase dna2 [Arthroderma gypseum CBS 118893] Length = 1595 Score = 38.4 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 32/120 (26%), Gaps = 7/120 (5%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS--MLPHRHWFEMQ 144 G GKTT A ++ G S++ + + T + N L L + Sbjct: 1094 GTGKTTTIAQII--RALVSQGKSVLLTSYTHTAVDNILLKIRDDKFRILRLGTPSKVHPE 1151 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + + ++ I T + DEAS Sbjct: 1152 VQQFAEMATTPKNTIEELEDSYENSKIVATTCLGVNH---RIFNTRTFDYCIVDEASQIT 1208 >gi|312076550|ref|XP_003140911.1| U5 small nuclear ribonucleoprotein helicase [Loa loa] gi|307763923|gb|EFO23157.1| U5 small nuclear ribonucleoprotein helicase [Loa loa] Length = 1646 Score = 38.4 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 19/160 (11%), Positives = 37/160 (23%), Gaps = 21/160 (13%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 Q + V S I A G GKT + +L RP + Sbjct: 1329 PIQTQVFRTVYEGNDS-----------VFIGAPHGSGKTVCAEFAILRHFDNRPDAKAVY 1377 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 + +++ + W + + L+ PS L + I + Sbjct: 1378 VTP----MEDLAEKKFGDWQERIGTALEKTVVMLTGEPSTDLKLLQRGQLIIATPEKWDN 1433 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212 ++ D+ + Sbjct: 1434 VSR-RWKQRKNVQAVR-----LFIVDDLHMIGGNNGPVLE 1467 >gi|310765239|gb|ADP10189.1| Non-specific serine/threonine protein kinase [Erwinia sp. Ejp617] Length = 1081 Score = 38.4 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 57/226 (25%), Gaps = 22/226 (9%) Query: 87 GIGKTTLNAWMMLWLISTRPGMS-IICIANSETQLKNTLWAEVSKWL--SMLPHRHWFEM 143 G+GKT ++W I P + +A L + E+ + + +P + Sbjct: 612 GLGKTLQILAFLVWNIEQNPDGEPGLIVAPV--SLLDNWQRELDNFFCTAGIPVLKLYGE 669 Query: 144 QSLSLHPSGWYAEL------LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 ++ ++ + + T E D + Sbjct: 670 TIGAVKYRQQDIPAHLKAQGIKNLLQPGWRGEAKIVLTTYETLRDQEFSLARQPWSIMVC 729 Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN--------GWFYDIFNIPLEDWK 249 DEA + I + T + L ++ Sbjct: 730 DEAQKIKNPA-ALITQAANAVQARFKVACTGTPVENTLVDLWSLFDFVQPGLLGALNEFG 788 Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI--EILGQFPQQEV 293 + + T E + + + R E+ G PQ+ Sbjct: 789 KRYVRTIENEDGRHHRALEQLRQLIKPQTLRRTKEEVAGDLPQKIE 834 >gi|315446103|ref|YP_004078982.1| nuclease-like protein [Mycobacterium sp. Spyr1] gi|315264406|gb|ADU01148.1| nuclease-like protein [Mycobacterium sp. Spyr1] Length = 551 Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 37/139 (26%), Gaps = 5/139 (3%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + I G G GKT L L ++++C ++ L + L + W Sbjct: 221 RVEIRGGAGSGKTFLAMEQARRLARAGRRVALVCYSH---GLASYLERITATWNRRHRPA 277 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + E L + + + H A+ D Sbjct: 278 YVGEFHDLGKQWGAPAGPDESVRNDETVRFWEHDLPSQMTRLATQLDPGHR--FDAIVVD 335 Query: 199 EASGTPDIINKSILGFFTE 217 EA D +L + Sbjct: 336 EAQDFADAWWDPLLAALKD 354 >gi|221197472|ref|ZP_03570519.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2M] gi|221204145|ref|ZP_03577163.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2] gi|221176311|gb|EEE08740.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2] gi|221184026|gb|EEE16426.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2M] Length = 464 Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats. Identities = 17/182 (9%), Positives = 39/182 (21%), Gaps = 10/182 (5%) Query: 87 GIGKTTLNAWMMLWLI-STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 G GKT + +L + + R + + + + + + Sbjct: 54 GSGKTAAFSLALLSRLDARRFDVQAMILCPTRELADQVAQEVRRLARAEENVKVLTLCGG 113 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 + P E + + + DEA D Sbjct: 114 TPMRPQAQSLEH---------GAHIVVGTPGRIMDHLDRGNLQLDALNTLVLDEADRMLD 164 Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265 + + P + + +G + + I F Sbjct: 165 MGFFDDIAKVARQCPPTRQTLLFSATYPDGIAKLSQQFLRNPKEVKLEERHDDSKIRQRF 224 Query: 266 HE 267 +E Sbjct: 225 YE 226 >gi|114048358|ref|YP_738908.1| EcoEI R domain-containing protein [Shewanella sp. MR-7] gi|113889800|gb|ABI43851.1| EcoEI R, C-terminal domain protein [Shewanella sp. MR-7] Length = 821 Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats. Identities = 22/192 (11%), Positives = 49/192 (25%), Gaps = 26/192 (13%) Query: 44 PLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS 103 P + P +QL+ + + + + + G GKT A+ ++W + Sbjct: 166 PDSNGKAPRYYQLQAINKTVEAVAAGQD-------RVLLVMATGTGKTY-TAFQIIWRLW 217 Query: 104 T-RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162 R I+ +A+ +N L + S Sbjct: 218 KSRAKKRILFLAD-----RNILVDQTK------------TNDFQPFGTSMTKVTGRTVDP 260 Query: 163 GIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNR 222 + T EE + + DE + + + Sbjct: 261 AYEIHLALYQALTGPEESQKAYKQVAPDFFDLIVVDECHRGSAAEDSAWREILEYFSAAT 320 Query: 223 FWIMTSNTRRLN 234 +T+ + + Sbjct: 321 QIGLTATPKETD 332 >gi|317026211|ref|XP_001389173.2| DNA replication helicase Dna2 [Aspergillus niger CBS 513.88] Length = 1660 Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 31/120 (25%), Gaps = 7/120 (5%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR--HWFEMQ 144 G GKTT A ++ G S++ + + T + N L +L Sbjct: 1167 GTGKTTTIAHII--RALVAQGKSVLLTSYTHTAVDNILLKIKDDNFRILRIGAPAKVHPD 1224 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + + + + T F DEAS Sbjct: 1225 VQQFAELAAVPKSTMEELKASYEDSQVVATTCLGVSHGIFTQ---RMFDYCIVDEASQIT 1281 >gi|134055283|emb|CAK96173.1| unnamed protein product [Aspergillus niger] Length = 1085 Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 31/120 (25%), Gaps = 7/120 (5%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR--HWFEMQ 144 G GKTT A ++ G S++ + + T + N L +L Sbjct: 592 GTGKTTTIAHII--RALVAQGKSVLLTSYTHTAVDNILLKIKDDNFRILRIGAPAKVHPD 649 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + + + + T F DEAS Sbjct: 650 VQQFAELAAVPKSTMEELKASYEDSQVVATTCLGVSHGIFTQ---RMFDYCIVDEASQIT 706 >gi|116195494|ref|XP_001223559.1| hypothetical protein CHGG_04345 [Chaetomium globosum CBS 148.51] gi|88180258|gb|EAQ87726.1| hypothetical protein CHGG_04345 [Chaetomium globosum CBS 148.51] Length = 1610 Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 48/185 (25%), Gaps = 14/185 (7%) Query: 15 LHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSN 74 L L + F + FP G + H Q + V H V+ + Sbjct: 1130 LSNQLWKETKLAHPLGFDVGDFPDGAEDTLSPH-------QRLIYDMVMTHDQQTVDGLH 1182 Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLI-----STRPGMS--IICIANSETQLKNTLWAE 127 P + I G GK+ + L RP +I A + Sbjct: 1183 PPPLRLNIDGRGGSGKSYAIKLISAHLYKRAVQQARPDAENIVIRSAPTGVAANGIQGTT 1242 Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187 + L + FE S + + + ID K + + P Sbjct: 1243 LHSLLRLPVGIVAFEPLSPPDVAAAQARLQSLKYLVIDEKSMISLKTMGFIDNRLRQIFP 1302 Query: 188 HNTHG 192 + Sbjct: 1303 RSNEP 1307 >gi|331702004|ref|YP_004398963.1| DEAD/DEAH box helicase domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329129347|gb|AEB73900.1| DEAD/DEAH box helicase domain protein [Lactobacillus buchneri NRRL B-30929] Length = 429 Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 60/224 (26%), Gaps = 19/224 (8%) Query: 66 CHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLW 125 V A G GKT A +L I G+S++ I S T Sbjct: 20 IQQAVYQPLKDGQSVLGLAPTGSGKTVAFALPLLENIQPEDGLSLLVIEPSAELAMQT-- 77 Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185 W ++ LS+ A + Q + I T Sbjct: 78 --------QKVLLEWGKLIGLSVQGIIGGANINRQVDKLKQHPNVIVGTTGRIVNLIDLG 129 Query: 186 GPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244 A+ DEA + + SI + + S T+ Sbjct: 130 KLKLDSLKAIVIDEADNLLSEDTLASIRSLVDLADDSVTLGFFSATQND-------LLAH 182 Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 + W I T V ID + S+ + ++L +F Sbjct: 183 VNRWFVQDIQTFDVSDIDDTRG-EVKHTLLEVSNRKKAQMLLRF 225 >gi|325124331|gb|ADY83854.1| exonuclease V, alpha subunit [Acinetobacter calcoaceticus PHEA-2] Length = 583 Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats. Identities = 18/148 (12%), Positives = 38/148 (25%), Gaps = 16/148 (10%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 ++++ + I+ G G GKT A ++ L P + + A + Sbjct: 119 DYLDLLTDAHQQAALQMVARQSLSIITGGPGTGKTYTLARIIAVLSQAIPHIRVAMAAPT 178 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 + +Q+ P + L+ + + Sbjct: 179 GKAAQRM----------------QEALQNSFNDPKLLESGLVSEELRNQGTQTIHRLLGM 222 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTP 204 + F + DEAS Sbjct: 223 GHSQTPRFNQKQPLPYDVIVVDEASMLD 250 >gi|311278820|ref|YP_003941051.1| cyclic peptide transporter [Enterobacter cloacae SCF1] gi|308748015|gb|ADO47767.1| cyclic peptide transporter [Enterobacter cloacae SCF1] Length = 547 Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats. Identities = 29/195 (14%), Positives = 57/195 (29%), Gaps = 20/195 (10%) Query: 49 SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA------ISAGRGIGKTTLNAWMMLWLI 102 +P WQ + V H N P A + G G GK+TL M+L + Sbjct: 316 DRPD-WQTLELRDVTFHYQDNTFGIGPINLTLARGELVFLIGGNGSGKSTLA--MLLTGL 372 Query: 103 STRPGMSIIC----IANSETQLKNTLWAEV--SKWLSMLPHRHWFEMQSLSLHPSGWYAE 156 I+ +A + L++ V WL + L Sbjct: 373 YQPVSGQILVDGKPLAAERPEDYRRLFSAVFTDVWLFDKLLGPAGQEADPRLTDKWLSLL 432 Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-----KSI 211 + + +++ + +++ + + DE + D + + Sbjct: 433 KMTGKVTLENGTILDLRLSKGQKKRVALLLALAEARDIILLDEWAADQDPHFRREFYQVL 492 Query: 212 LGFFTELNPNRFWIM 226 L ++ F I Sbjct: 493 LPLMQQMGKTVFAIS 507 >gi|307104210|gb|EFN52465.1| hypothetical protein CHLNCDRAFT_138793 [Chlorella variabilis] Length = 2323 Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 42/157 (26%), Gaps = 21/157 (13%) Query: 45 LEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST 104 L FS + Q + + + +P + A G GKT ML L S Sbjct: 1374 LYKFSHFNPIQTQAFHTLY-------HTDHP----VLLGAPTGSGKTISAELAMLRLFSQ 1422 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 PG +I +A + ++ + W F + + Sbjct: 1423 HPGQKVIYVAPLKALVRER----IKDW------GAGFCRALGKRLVELTGDYTPDMHALL 1472 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 + T + + + + DE Sbjct: 1473 AADVIICTPEKWDGISRNWRSRSYVRKVGLLVIDEIH 1509 >gi|254507584|ref|ZP_05119717.1| EcoEI R C-terminal domain protein [Vibrio parahaemolyticus 16] gi|219549471|gb|EED26463.1| EcoEI R C-terminal domain protein [Vibrio parahaemolyticus 16] Length = 814 Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats. Identities = 22/190 (11%), Positives = 47/190 (24%), Gaps = 26/190 (13%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST- 104 P +QL+ + + N + + G GKT A+ ++W + Sbjct: 164 GSGKSPRYYQLQAINKTVEAVAAGQN-------RVLLVMATGTGKTY-TAFQIIWRLWKS 215 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 R I+ +A+ +N L + P+ Sbjct: 216 RAKKRILFLAD-----RNILVDQTK------------TNDFQPFGPAMTKVTGRTVDPAY 258 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224 + T EE + + DE + + Sbjct: 259 EIHLALYQALTGPEEHQKAYKQVDPDFFDLIVVDECHRGSAAEDSAWREILEYFGSATQI 318 Query: 225 IMTSNTRRLN 234 +T+ + + Sbjct: 319 GLTATPKETD 328 >gi|310657378|ref|YP_003935099.1| putative helicase [Clostridium sticklandii DSM 519] gi|308824156|emb|CBH20194.1| putative Similarities with helicase [Clostridium sticklandii] Length = 636 Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats. Identities = 22/208 (10%), Positives = 56/208 (26%), Gaps = 20/208 (9%) Query: 29 KNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGI 88 +N+ P + + L + Q+E + + +S +N + G+ Sbjct: 7 ENYFKYSKPNILGNEELRYP------QVEAYIEIKEYFNSEYDN-----RNALVVLPTGV 55 Query: 89 GKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH--WFEMQSL 146 GKT A G ++ + + A + + + + L Sbjct: 56 GKTGFMAIA----PFGVSGGRVLIVTPYAAIKNTVIDALNPDIYNNFWLKRNVFSSRKFL 111 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + + + + + S + DEA + Sbjct: 112 PTIIEYNGQDTPMEVLNKANIVILNIHKLQSRLDSSLINRVSKDFFDMIIIDEAHHSTAD 171 Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLN 234 + +F + ++ +T R + Sbjct: 172 TWVECVNYF---DKSKVLKLTGTPFRTD 196 >gi|46255203|ref|YP_006115.1| hypothetical protein TT_P0132 [Thermus thermophilus HB27] gi|46198052|gb|AAS82462.1| hypothetical conserved protein [Thermus thermophilus HB27] Length = 786 Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats. Identities = 33/260 (12%), Positives = 61/260 (23%), Gaps = 33/260 (12%) Query: 60 EAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQ 119 V C S P +F+ + G GKT L ++ + Sbjct: 290 REVYEACLQAAELS-PGLFRLTV--PTGGGKTRSGLAFALRHALKHGLRRVVVAIPYTSI 346 Query: 120 LKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE- 178 + T H + +L Q + ++ + T + Sbjct: 347 IDQTAQVYREILGEEAVLEHHSAYE--PPLGEEQEENVLRQRLATENWDAPLVVTTTVQL 404 Query: 179 ------ERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRR 232 RP H + DE P + K L + + Sbjct: 405 FESLFSNRPSKMRKVHRLARSVILLDEVQTLPPELLKPTLEALR---------LLATPVE 455 Query: 233 LNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292 G+ + Q V I+ Y + + + P+ Sbjct: 456 EGGYGATVV-----LSTATQPTFEVVPTFQGLPVREIVPDYPRHFARLQRVVYERRPK-- 508 Query: 293 VNNFIPHNYIEEAMSREAID 312 P ++ E A +A Sbjct: 509 -----PLSWEELARELQARP 523 >gi|317124599|ref|YP_004098711.1| NERD domain protein [Intrasporangium calvum DSM 43043] gi|315588687|gb|ADU47984.1| NERD domain protein [Intrasporangium calvum DSM 43043] Length = 560 Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats. Identities = 23/143 (16%), Positives = 38/143 (26%), Gaps = 11/143 (7%) Query: 79 KCAISAGRGIGKTTLN---AWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 + + G G GKT L A + R + + S L + L Sbjct: 232 RMEVRGGAGSGKTILALTQAKDLTRGQGERRPQRVALLCYSIG-----LSQYFKRQLQAA 286 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 PHRH + S + D + + P + A+ Sbjct: 287 PHRHRPAF-AGSFEDLANEWGIATAHDRNDRDFWERDLAAQMAAVAERL--PESRRFDAI 343 Query: 196 FNDEASGTPDIINKSILGFFTEL 218 DEA D ++ + Sbjct: 344 IVDEAQDFADHWWNPLMKSLKDE 366 >gi|238021357|ref|ZP_04601783.1| hypothetical protein GCWU000324_01256 [Kingella oralis ATCC 51147] gi|237868337|gb|EEP69343.1| hypothetical protein GCWU000324_01256 [Kingella oralis ATCC 51147] Length = 619 Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats. Identities = 29/269 (10%), Positives = 65/269 (24%), Gaps = 63/269 (23%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 F+E + + V F+ + + R IG T A L + A Sbjct: 175 FLEQLFDYQR--VWLKQQVRFRHLLKS-RQIGATFFFAREALVDAVKTGKNKVFLSA--- 228 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177 +Q + ++ +++ + + ++++ G + RT Sbjct: 229 SQAQAFIF------------KNYMRKLAGMVDVELKGSDVITLGNGAELHFLGTNSRTAQ 276 Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNG 235 D ++ DE PD + ++ S + Sbjct: 277 GRNGD------------LYVDEYFWIPDFKRLRDLANPMASQ--KRYRITYFSTPSTTSH 322 Query: 236 WFYDIF----------------------------NIPLEDWKRYQIDTRTVEGIDSGFHE 267 YD + + P W++ + E + Sbjct: 323 PAYDFWTGAEFNVGRAESERIKLDVSPAALAAGRHDPDGKWRQV-VTLDDAERGGCNLFD 381 Query: 268 GIISRYGLDSDVARIEILGQFPQQEVNNF 296 R + +F + F Sbjct: 382 REQLMLENAPAQFRQLFMCEFVEDGDGVF 410 >gi|224503353|ref|ZP_03671660.1| hypothetical protein LmonFR_12705 [Listeria monocytogenes FSL R2-561] Length = 441 Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 34/152 (22%), Gaps = 11/152 (7%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +WQ E S + + G GKT A L I P + Sbjct: 12 EKWQEHGYETPTE-IQSAMYQPIKDGADVLAVSPTGTGKTVAYALPTLEKIEAIPKTQWL 70 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 +A S + R W L++ A + Q + K I Sbjct: 71 VLAPSHELVMQITE----------VIRSWLPSDDLTVISLIGGANVKRQIEKLKKKPQII 120 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + DE Sbjct: 121 VASPGRALELIKQKKIKMHEIKTITLDECDQL 152 >gi|254832425|ref|ZP_05237080.1| hypothetical protein Lmon1_13804 [Listeria monocytogenes 10403S] Length = 441 Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 34/152 (22%), Gaps = 11/152 (7%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +WQ E S + + G GKT A L I P + Sbjct: 12 EKWQEHGYETPTE-IQSAMYQPIKDGADVLAVSPTGTGKTVAYALPTLEKIEAIPKTQWL 70 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 +A S + R W L++ A + Q + K I Sbjct: 71 VLAPSHELVMQITE----------VIRSWLPSDDLTVISLIGGANVKRQIEKLKKKPQII 120 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + DE Sbjct: 121 VASPGRALELIKQKKIKMHEIKTITLDECDQL 152 >gi|145225752|ref|YP_001136430.1| hypothetical protein Mflv_5176 [Mycobacterium gilvum PYR-GCK] gi|145218238|gb|ABP47642.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] Length = 551 Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 37/139 (26%), Gaps = 5/139 (3%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + I G G GKT L L ++++C ++ L + L + W Sbjct: 221 RVEIRGGAGSGKTFLAMEQARRLARAGRRVALVCYSH---GLASYLERITATWNRRHRPA 277 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + E L K + + H A+ D Sbjct: 278 YVGEFHDLGKQWGAPAGPDESVRNDETVKFWEHDLPSQMTRLATQLDPGHR--FDAIVVD 335 Query: 199 EASGTPDIINKSILGFFTE 217 EA D +L + Sbjct: 336 EAQDFADAWWDPLLAALKD 354 >gi|16803762|ref|NP_465247.1| hypothetical protein lmo1722 [Listeria monocytogenes EGD-e] gi|47095648|ref|ZP_00233255.1| helicase domain protein [Listeria monocytogenes str. 1/2a F6854] gi|224499557|ref|ZP_03667906.1| hypothetical protein LmonF1_07612 [Listeria monocytogenes Finland 1988] gi|254829244|ref|ZP_05233931.1| helicase domain-containing protein [Listeria monocytogenes FSL N3-165] gi|254900773|ref|ZP_05260697.1| hypothetical protein LmonJ_13194 [Listeria monocytogenes J0161] gi|254913741|ref|ZP_05263753.1| helicase domain-containing protein [Listeria monocytogenes J2818] gi|254938128|ref|ZP_05269825.1| helicase domain-containing protein [Listeria monocytogenes F6900] gi|284802166|ref|YP_003414031.1| hypothetical protein LM5578_1922 [Listeria monocytogenes 08-5578] gi|284995308|ref|YP_003417076.1| hypothetical protein LM5923_1873 [Listeria monocytogenes 08-5923] gi|16411176|emb|CAC99800.1| lmo1722 [Listeria monocytogenes EGD-e] gi|47015933|gb|EAL06859.1| helicase domain protein [Listeria monocytogenes str. 1/2a F6854] gi|258601656|gb|EEW14981.1| helicase domain-containing protein [Listeria monocytogenes FSL N3-165] gi|258610742|gb|EEW23350.1| helicase domain-containing protein [Listeria monocytogenes F6900] gi|284057728|gb|ADB68669.1| hypothetical protein LM5578_1922 [Listeria monocytogenes 08-5578] gi|284060775|gb|ADB71714.1| hypothetical protein LM5923_1873 [Listeria monocytogenes 08-5923] gi|293591758|gb|EFG00093.1| helicase domain-containing protein [Listeria monocytogenes J2818] Length = 441 Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 34/152 (22%), Gaps = 11/152 (7%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +WQ E S + + G GKT A L I P + Sbjct: 12 EKWQEHGYETPTE-IQSAMYQPIKDGADVLAVSPTGTGKTVAYALPTLEKIEAIPKTQWL 70 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 +A S + R W L++ A + Q + K I Sbjct: 71 VLAPSHELVMQITE----------VIRSWLPSDDLTVISLIGGANVKRQIEKLKKKPQII 120 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + DE Sbjct: 121 VASPGRALELIKQKKIKMHEIKTITLDECDQL 152 >gi|229844857|ref|ZP_04464995.1| DNA-dependent helicase II [Haemophilus influenzae 6P18H1] gi|229812238|gb|EEP47929.1| DNA-dependent helicase II [Haemophilus influenzae 6P18H1] Length = 726 Score = 38.4 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 81/302 (26%), Gaps = 29/302 (9%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIA 114 E ++ ++ V + AG G GKT + + WLI+ SI+ + Sbjct: 5 ELLDGLNDKQREAVAAPIGNH---LVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 + S H+ + + +G+ + Sbjct: 62 FTNKAAAEMRHRIQSTLAKHAQHQLFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSE 121 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 + HN DE + P + + + Sbjct: 122 -DQLRLIKRLLKLHN-------FDEKAF-PPKQACWYINNKKDEGLR--------PNDIE 164 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294 + ++ ++ YQ +D + + +F V+ Sbjct: 165 DFNDRQEREWIKIYQIYQDTCDRAGLVDFAELLIRVYELFEKKPLILQRYQQRFQHILVD 224 Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354 F N I+ + + +++ D D++ + RG IE+I + Sbjct: 225 EFQDTNKIQYK-WIKILAGKTGKVMIVGD-----DDQS-IYGWRGAQIENIQKFLKDFKA 277 Query: 355 ET 356 ET Sbjct: 278 ET 279 >gi|68249734|ref|YP_248846.1| DNA-dependent helicase II [Haemophilus influenzae 86-028NP] gi|68057933|gb|AAX88186.1| DNA helicase II [Haemophilus influenzae 86-028NP] Length = 727 Score = 38.4 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 80/302 (26%), Gaps = 29/302 (9%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIA 114 E ++ ++ V + AG G GKT + + WLI+ SI+ + Sbjct: 6 ELLDGLNDKQRKAVAAPLGNH---LVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 62 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 + S H+ + +G+ + Sbjct: 63 FTNKAAAEMRHRIQSTLAKHAQHQLVGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSE 122 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 + HN DE + P + + + Sbjct: 123 -DQLRLIKRLLKLHN-------FDEKAF-PPKQACWYINNKKDEGLR--------PNDIE 165 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294 + ++ ++ YQ +D + + +F V+ Sbjct: 166 DFNDRQEREWIKIYQIYQDTCDRAGLVDFAELLIRVYELFEKKPLILQRYQQRFQHILVD 225 Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354 F N I+ + + +++ D D++ + RG IE+I + Sbjct: 226 EFQDTNKIQYK-WIKILSGKTGKVMIVGD-----DDQS-IYGWRGAQIENIQKFLKDFKA 278 Query: 355 ET 356 ET Sbjct: 279 ET 280 >gi|328354481|emb|CCA40878.1| DNA replication ATP-dependent helicase Dna2 [Pichia pastoris CBS 7435] Length = 1413 Score = 38.4 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 15/119 (12%), Positives = 38/119 (31%), Gaps = 3/119 (2%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTT+ A ++ +++ G S++ +++ + + + L + + ++ L Sbjct: 974 GTGKTTVIAQIIRIMVAN--GKSVLLTSHTHSAVDSILLKLLDDGIDFYRVGSEAKIHPL 1031 Query: 147 -SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 S+ + + + + DEAS Sbjct: 1032 VRKFMPQKRGSADMNSIEDFQRMIHQAPVVAATCMGVGDLVFNYRTFDYCIVDEASQVS 1090 >gi|260940775|ref|XP_002615227.1| hypothetical protein CLUG_04109 [Clavispora lusitaniae ATCC 42720] gi|238850517|gb|EEQ39981.1| hypothetical protein CLUG_04109 [Clavispora lusitaniae ATCC 42720] Length = 477 Score = 38.4 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 47/157 (29%), Gaps = 12/157 (7%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIIC 112 Q+ + + N + ++A G GKT + ++ + R P + I Sbjct: 133 QVGTLRLIMEDIRRNRLAPD-FRGDLLVNASTGSGKTLAYSIPVIEALYDRVVPRVRAII 191 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 + ++ L +VS+ L L + + SL+ S + + D I Sbjct: 192 LVPTKP-----LITQVSQTLRDLSNGTTLSIVSLTSDLSIREEGIKITTNIPD----VIV 242 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209 + DEA + + Sbjct: 243 STPGRLVDHLLNGSISLEALRFLIIDEADRLLNQSFQ 279 >gi|254573166|ref|XP_002493692.1| Essential tripartite DNA replication factor with single-stranded DNA-dependent ATPase [Pichia pastoris GS115] gi|238033491|emb|CAY71513.1| Essential tripartite DNA replication factor with single-stranded DNA-dependent ATPase [Pichia pastoris GS115] Length = 1397 Score = 38.4 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 15/119 (12%), Positives = 38/119 (31%), Gaps = 3/119 (2%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTT+ A ++ +++ G S++ +++ + + + L + + ++ L Sbjct: 958 GTGKTTVIAQIIRIMVAN--GKSVLLTSHTHSAVDSILLKLLDDGIDFYRVGSEAKIHPL 1015 Query: 147 -SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 S+ + + + + DEAS Sbjct: 1016 VRKFMPQKRGSADMNSIEDFQRMIHQAPVVAATCMGVGDLVFNYRTFDYCIVDEASQVS 1074 >gi|84497795|ref|ZP_00996592.1| hypothetical protein JNB_16948 [Janibacter sp. HTCC2649] gi|84381295|gb|EAP97178.1| hypothetical protein JNB_16948 [Janibacter sp. HTCC2649] Length = 1203 Score = 38.4 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 31/219 (14%), Positives = 62/219 (28%), Gaps = 17/219 (7%) Query: 76 TIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML 135 ++ G GKT + + ++ L+ G + A S ++N L A V+ + Sbjct: 803 DRSALSVQGPPGTGKTYVASQVIADLVRDH-GWRVGVCAQSHASIENVLAAVVAAGVDPE 861 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 + + A+ L Y I + P + Sbjct: 862 QVAKMTKEATEPTWTDLASADDLAGFAAEQQGGYVIGGTAWDLTNPKRVQPG---QLDLL 918 Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED------WK 249 DEA S+ ++ + ++L P++ + Sbjct: 919 VIDEAGQ------YSLAKTLAVAESADRLLLLGDPQQLPQVSQGTHPEPVDASALGWVIR 972 Query: 250 RYQIDTRTVEGIDSGFHE-GIISRYGLDSDVARIEILGQ 287 + D R + F E L V+R+ G+ Sbjct: 973 AERDDERVLPASHGYFLETTWRMHPALTEPVSRLAYEGR 1011 >gi|326444878|ref|ZP_08219612.1| hypothetical protein SclaA2_27605 [Streptomyces clavuligerus ATCC 27064] Length = 870 Score = 38.4 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 36/153 (23%), Gaps = 28/153 (18%) Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT--LWAEVSK-- 130 P + I + G GKT A L + ++ + L T W V Sbjct: 3 PQGARGTIVSATGSGKTITAAACAL---ESFADGRVLVTVPTLDLLAQTAQAWRLVGHRA 59 Query: 131 ------------WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 L+ L R L+L + + + + Sbjct: 60 PMVAVCSLENDPVLNSLGVRTTTNPIQLALWAGSGPVVVFATYASLVDREEIGAPVGQRK 119 Query: 179 ER---------PDTFVGPHNTHGMAVFNDEASG 202 R + G DEA G Sbjct: 120 VRGPLEAALAGGERLYGQRMASFDLAIVDEAHG 152 >gi|319652392|ref|ZP_08006508.1| helicase [Bacillus sp. 2_A_57_CT2] gi|317395854|gb|EFV76576.1| helicase [Bacillus sp. 2_A_57_CT2] Length = 1050 Score = 38.4 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 27/188 (14%), Positives = 54/188 (28%), Gaps = 31/188 (16%) Query: 50 QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW-MMLWLISTRPGM 108 QP+ +Q E +E + V K I A G+GKT ++A+ + R Sbjct: 324 QPYYYQKEILEKLQ------VERKVFGRRKNLIVAATGVGKTVISAFDYKNYYKQNRHAA 377 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 ++ +A+ E LK +L L + + + ++ Sbjct: 378 KLLFVAHREEILKQSL-DTFRAILKDANFGDLLVGNHQPSSLDHLFVSIQSFNSKKLYEN 436 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI-MT 227 T + DE + + + +T Sbjct: 437 TTADF------------------YDFIIVDEFHHAAANSYQ----TLLDYYKPNILVGLT 474 Query: 228 SNTRRLNG 235 + R++G Sbjct: 475 ATPERMDG 482 >gi|302756859|ref|XP_002961853.1| hypothetical protein SELMODRAFT_140315 [Selaginella moellendorffii] gi|300170512|gb|EFJ37113.1| hypothetical protein SELMODRAFT_140315 [Selaginella moellendorffii] Length = 1015 Score = 38.4 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 65/207 (31%), Gaps = 16/207 (7%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 A++A RG GK+ + ++ +I A S LK L+ V K L ++ Sbjct: 279 VALTASRGRGKSAALGLAIAGAVAFGY-SNIFVTAPSPENLKT-LFEFVCKGFDALEYKE 336 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + ++ ++ + + + + DE Sbjct: 337 HIDYDLVQSTNPAFNKAVVRVNIFRQHRQTIQYIQPQDHAK--------LAQAELLIIDE 388 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 A+ P + K++LG + F T N G + I + +V Sbjct: 389 AAAIPLPMVKALLGPYL-----VFMCSTVNGYEGTGRSLSLKLIQQLRSQGKSESAPSV- 442 Query: 260 GIDSGFHEGIISRYGLDSDVARIEILG 286 + E I G + E+L Sbjct: 443 FREVELAEPIRYGAGDPIEGWLHELLC 469 >gi|227496838|ref|ZP_03927104.1| type I restriction-modification system restriction subunit [Actinomyces urogenitalis DSM 15434] gi|315656944|ref|ZP_07909831.1| type I site-specific deoxyribonuclease [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|226833659|gb|EEH66042.1| type I restriction-modification system restriction subunit [Actinomyces urogenitalis DSM 15434] gi|315492899|gb|EFU82503.1| type I site-specific deoxyribonuclease [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 1009 Score = 38.4 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 47/179 (26%), Gaps = 12/179 (6%) Query: 23 ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAI 82 + + F FV P G K + P QL+ + + +N N + A Sbjct: 251 DILHRFVQFVPGKTPEGRPAKSKDKVIFPRFHQLDAVRKLIADAKANGAGHNYLVQHSA- 309 Query: 83 SAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE 142 G GK+ AW+ L + + + + + L F Sbjct: 310 ----GSGKSNTIAWLAHHLSNLHDDQQRVVF-------DSIIVITDRRVLDKQLQDTVFS 358 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEAS 201 M + + + + I D AV DEA Sbjct: 359 MDHTAGVVVKVDKNARQLTDALGRGARIIISTLQKFPFVDVSNIATAGKRFAVIVDEAH 417 >gi|225870101|ref|YP_002746048.1| RNA helicase [Streptococcus equi subsp. equi 4047] gi|225699505|emb|CAW93057.1| putative RNA helicase [Streptococcus equi subsp. equi 4047] Length = 364 Score = 38.4 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 20/186 (10%), Positives = 41/186 (22%), Gaps = 13/186 (6%) Query: 51 PHRWQLEFMEAVDVHC---HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPG 107 P +WQ + + + V + G GKT W L +S + Sbjct: 6 PTQWQEKLAKLGFTNLTPIQEQVFQPIVDGKSLLGISPTGTGKTLAYLWPSLLRLSPKKA 65 Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 ++ +A + L+ +W L + S + Sbjct: 66 QQLLILAPNTELAGQ-LFEVTKEWAEPLGLTAQLFISGSSQKRQIE---------RLKKG 115 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMT 227 I + DE + + P ++ Sbjct: 116 PEIIIGTPGRIFELVRLKKIKMMAINTIILDEYDDLLSDSQYQFVQKLSHYAPRDHQMIY 175 Query: 228 SNTRRL 233 + Sbjct: 176 MSATNK 181 >gi|317485973|ref|ZP_07944828.1| hypothetical protein HMPREF0179_02183 [Bilophila wadsworthia 3_1_6] gi|316922746|gb|EFV43977.1| hypothetical protein HMPREF0179_02183 [Bilophila wadsworthia 3_1_6] Length = 529 Score = 38.4 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 41/131 (31%), Gaps = 11/131 (8%) Query: 69 NVNNSNPTIFKCAISAGRGIGKTTLNA-WMMLWLISTRPGMSIICIANSETQLKNTLWAE 127 P + AI+A RG K+T + + +LW + T I+ IA++ Q + L A Sbjct: 59 PRMADAPEGVRLAIAAPRGEAKSTFVSLFFVLWAVLTGRKHYILIIADALEQAASLLGA- 117 Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187 + F P + + + I + GP Sbjct: 118 -------VKDELEFNEALKRDFPGVGKGHVWNVGTVVTPGNVKIQALGAGKRMRGLRHGP 170 Query: 188 HNTHGMAVFND 198 H + D Sbjct: 171 HR--PDLIVLD 179 >gi|302798078|ref|XP_002980799.1| hypothetical protein SELMODRAFT_113365 [Selaginella moellendorffii] gi|300151338|gb|EFJ17984.1| hypothetical protein SELMODRAFT_113365 [Selaginella moellendorffii] Length = 1015 Score = 38.4 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 65/207 (31%), Gaps = 16/207 (7%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 A++A RG GK+ + ++ +I A S LK L+ V K L ++ Sbjct: 279 VALTASRGRGKSAALGLAIAGAVAFGY-SNIFVTAPSPENLKT-LFEFVCKGFDALEYKE 336 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + ++ ++ + + + + DE Sbjct: 337 HIDYDLVQSTNPAFNKAVVRVNIFRQHRQTIQYIQPQDHAK--------LAQAELLIIDE 388 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 A+ P + K++LG + F T N G + I + +V Sbjct: 389 AAAIPLPMVKALLGPYL-----VFMCSTVNGYEGTGRSLSLKLIQQLRSQGKSESAPSV- 442 Query: 260 GIDSGFHEGIISRYGLDSDVARIEILG 286 + E I G + E+L Sbjct: 443 FREVELAEPIRYGAGDPIEGWLHELLC 469 >gi|213403958|ref|XP_002172751.1| DEAD/DEAH box helicase [Schizosaccharomyces japonicus yFS275] gi|212000798|gb|EEB06458.1| DEAD/DEAH box helicase [Schizosaccharomyces japonicus yFS275] Length = 1722 Score = 38.4 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 15/155 (9%), Positives = 43/155 (27%), Gaps = 19/155 (12%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P +WQ + ++ +D + A GKT ++ + M ++ + Sbjct: 742 PDKWQRDTLDILDRDES------------VFVVAPTSAGKTFISFYAMEKVLRDNDEGVV 789 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 I +A ++ + +++ PH + + + + + Sbjct: 790 IYVAPTKALVNQLSAEVYARFNKRYPHAGQTVWSVYTRDYRINNPTNCQVLITV---PHV 846 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 + + + + DE Sbjct: 847 LQSMLLQPALANAW----CPKIRRIIFDEIHSIGQ 877 >gi|75676132|ref|YP_318553.1| CRISPR-associated helicase Cas3 family protein protein [Nitrobacter winogradskyi Nb-255] gi|74421002|gb|ABA05201.1| CRISPR-associated helicase, Cas3 family [Nitrobacter winogradskyi Nb-255] Length = 744 Score = 38.4 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 22/162 (13%), Positives = 41/162 (25%), Gaps = 13/162 (8%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + H + N P +F + G GKT + L II + + Sbjct: 231 DILAHVRAGALN-EPGLFTLNV--PTGGGKTLASLGFALAHARKWDHRRIIYAIPFTSIV 287 Query: 121 -------KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173 ++ L + E + + + + + + Sbjct: 288 DQTAAIFRDILGEDNVLEHHSAIDEEHIEERWGRDKLKLAMQDWAAPVVVTTNVQFFESL 347 Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 R HN G + DEA P + K + Sbjct: 348 FAARTSRA---RKLHNIAGSIIILDEAQTIPRPLLKPCVRML 386 >gi|19114238|ref|NP_593326.1| N-acetyltransferase Nat10 (predicted) [Schizosaccharomyces pombe 972h-] gi|3219939|sp|P87115|YDK9_SCHPO RecName: Full=UPF0202 protein C20G8.09c gi|2094864|emb|CAB08603.1| N-acetyltransferase Nat10 (predicted) [Schizosaccharomyces pombe] Length = 1033 Score = 38.4 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 10/125 (8%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 +++AGRG GK+ + +I + S LK L+ + K L + Sbjct: 278 VSLTAGRGRGKSAALGLAIA-AAIAHGYSNIFITSPSPENLKT-LFEFIFKGFDALNYEE 335 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + ++ ++ ++ D + +T P+ V DE Sbjct: 336 HVDYDIIQSTNPAYHNAIVRVNIFRDHR------QTIQYISPEDSNVLG--QAELVVIDE 387 Query: 200 ASGTP 204 A+ P Sbjct: 388 AAAIP 392 >gi|116194167|ref|XP_001222896.1| hypothetical protein CHGG_06801 [Chaetomium globosum CBS 148.51] gi|88182714|gb|EAQ90182.1| hypothetical protein CHGG_06801 [Chaetomium globosum CBS 148.51] Length = 2103 Score = 38.4 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 48/185 (25%), Gaps = 14/185 (7%) Query: 15 LHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSN 74 L L + F + FP G + H Q + V H V+ + Sbjct: 1622 LSNQLWKETKLAHPLGFDVGDFPDGAEDTLSPH-------QRLIYDMVMTHDQQTVDGLH 1674 Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLI-----STRPGMS--IICIANSETQLKNTLWAE 127 P + I G GK+ + L RP +I A + Sbjct: 1675 PPPLRLNIDGRGGSGKSYAIKLISAHLYKRAVQQARPDAENIVIRSAPTGVAANGIQGTT 1734 Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187 + L + FE S + + + ID K + + P Sbjct: 1735 LHSLLRLPVGIVAFEPLSPPDVAAAQARLQSLKYLVIDEKSMISLKTMGFIDNRLRQIFP 1794 Query: 188 HNTHG 192 + Sbjct: 1795 RSNEP 1799 >gi|115524887|ref|YP_781798.1| UvrD/REP helicase [Rhodopseudomonas palustris BisA53] gi|115518834|gb|ABJ06818.1| UvrD/REP helicase [Rhodopseudomonas palustris BisA53] Length = 700 Score = 38.4 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 27/274 (9%), Positives = 71/274 (25%), Gaps = 16/274 (5%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 + AG G GKT A + L+ + + + + + V + Sbjct: 46 LLVIAGAGSGKTNTLAHRVAHLLVHGADPRRLLLMTFSRRAASEMIRRVERIARKAIGEP 105 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 M ++ + T + + H + E Sbjct: 106 AAIMTGAMSWAGTFHGVGARLLRERAEQLGLDPGFTIHDREDAADLINLVRHQLGFSKTE 165 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 + SI ++ WF E + + + Sbjct: 166 SRFPTKGTCLSIYSRCVNAEAPIEQVL-------GSWFPWCAGWATELKQLFAGYVEAKQ 218 Query: 260 GIDSGFHEGIISRY--GLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAP 317 + ++ ++ + + ++ +F V+ + N ++ ++ D Sbjct: 219 QQNVLDYDDLLLYWAQAMRDPSFAADLASRFDHVLVDEYQDTNALQSSILLALKPDGIGL 278 Query: 318 LIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAK 351 ++ G D + R + +I D+ + Sbjct: 279 TVV-------GDDAQSIYAFRAATVRNILDFPNQ 305 >gi|321265578|ref|XP_003197505.1| nucleolus protein [Cryptococcus gattii WM276] gi|317463985|gb|ADV25718.1| Nucleolus protein, putative [Cryptococcus gattii WM276] Length = 1070 Score = 38.4 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 37/125 (29%), Gaps = 10/125 (8%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 A++AGRG GK+ + +I + LK L+ V K L L + Sbjct: 279 VALTAGRGRGKSAALGLAIG-AALAHDYSNIFVTSPDPENLKT-LFEFVFKALDALGYEE 336 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + ++ ++ + V DE Sbjct: 337 HIDYDVVQSTNPDFKKAIVRVNIFRGHRQTIQYISPEDSHVLGQAE--------LVIIDE 388 Query: 200 ASGTP 204 A+ P Sbjct: 389 AAAIP 393 >gi|322804372|emb|CBZ01922.1| DNA helicase [Clostridium botulinum H04402 065] Length = 1350 Score = 38.4 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 7/102 (6%), Positives = 32/102 (31%), Gaps = 6/102 (5%) Query: 40 IKGKPLEHFSQPHRWQL---EFMEAV-DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95 + + + + +W+ + + + ++ + G GK+ A Sbjct: 239 EEKEIEDDYIHKDQWKECKEDILFPLDANEEQISIVKKICENEAILVQGPPGTGKSHTIA 298 Query: 96 WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 ++ ++ G ++ + + L+ + + + Sbjct: 299 NLICHFLAH--GKKVLITSETSRALRVLINKIPKDIKPLCVN 338 >gi|170759897|ref|YP_001785430.1| hypothetical protein CLK_3276 [Clostridium botulinum A3 str. Loch Maree] gi|169406886|gb|ACA55297.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch Maree] Length = 1350 Score = 38.4 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 7/102 (6%), Positives = 32/102 (31%), Gaps = 6/102 (5%) Query: 40 IKGKPLEHFSQPHRWQL---EFMEAV-DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95 + + + + +W+ + + + ++ + G GK+ A Sbjct: 239 EEKEIEDDYIHKDQWKECKEDILFPLDANEEQISIVKKICENEAILVQGPPGTGKSHTIA 298 Query: 96 WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 ++ ++ G ++ + + L+ + + + Sbjct: 299 NLICHFLAH--GKKVLITSETSRALRVLINKIPKDIKPLCVN 338 >gi|168177433|ref|ZP_02612097.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916] gi|182670417|gb|EDT82391.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916] Length = 1350 Score = 38.4 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 7/102 (6%), Positives = 32/102 (31%), Gaps = 6/102 (5%) Query: 40 IKGKPLEHFSQPHRWQL---EFMEAV-DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95 + + + + +W+ + + + ++ + G GK+ A Sbjct: 239 EEKEIEDDYIHKDQWKECKEDILFPLDANEEQISIVKKICENEAILVQGPPGTGKSHTIA 298 Query: 96 WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 ++ ++ G ++ + + L+ + + + Sbjct: 299 NLICHFLAH--GKKVLITSETSRALRVLINKIPKDIKPLCVN 338 >gi|153824647|ref|ZP_01977314.1| type I restriction-modification system, R subunit [Vibrio cholerae MZO-2] gi|149741865|gb|EDM55894.1| type I restriction-modification system, R subunit [Vibrio cholerae MZO-2] Length = 825 Score = 38.4 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 22/190 (11%), Positives = 47/190 (24%), Gaps = 26/190 (13%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST- 104 P +QL+ + + N + + G GKT A+ ++W + Sbjct: 175 GSGKSPRYYQLQAINKTVEAVAAGQN-------RVLLVMATGTGKTY-TAFQIIWRLWKS 226 Query: 105 RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 R I+ +A+ +N L + P+ Sbjct: 227 RAKKRILFLAD-----RNILVDQTK------------TNDFQPFGPAMTKVTGRTVDPAY 269 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFW 224 + T EE + + DE + + Sbjct: 270 EIHLALYQALTGPEEHQKAYKQVDPDFFDLIVVDECHRGSAAEDSAWREILEYFGSATQI 329 Query: 225 IMTSNTRRLN 234 +T+ + + Sbjct: 330 GLTATPKETD 339 >gi|148378108|ref|YP_001252649.1| hypothetical protein CBO0101 [Clostridium botulinum A str. ATCC 3502] gi|153933124|ref|YP_001382508.1| hypothetical protein CLB_0137 [Clostridium botulinum A str. ATCC 19397] gi|153937141|ref|YP_001386060.1| hypothetical protein CLC_0149 [Clostridium botulinum A str. Hall] gi|148287592|emb|CAL81657.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 3502] gi|152929168|gb|ABS34668.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 19397] gi|152933055|gb|ABS38554.1| conserved hypothetical protein [Clostridium botulinum A str. Hall] Length = 1350 Score = 38.4 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 7/102 (6%), Positives = 32/102 (31%), Gaps = 6/102 (5%) Query: 40 IKGKPLEHFSQPHRWQL---EFMEAV-DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95 + + + + +W+ + + + ++ + G GK+ A Sbjct: 239 EEKEIEDDYIHKDQWKECKEDILFPLDANEEQISIVKKICENEAILVQGPPGTGKSHTIA 298 Query: 96 WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 ++ ++ G ++ + + L+ + + + Sbjct: 299 NLICHFLAH--GKKVLITSETSRALRVLINKIPKDIKPLCVN 338 >gi|258654733|ref|YP_003203889.1| type I site-specific deoxyribonuclease, HsdR family [Nakamurella multipartita DSM 44233] gi|258557958|gb|ACV80900.1| type I site-specific deoxyribonuclease, HsdR family [Nakamurella multipartita DSM 44233] Length = 1028 Score = 38.4 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 17/161 (10%), Positives = 40/161 (24%), Gaps = 17/161 (10%) Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICI--ANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 +G GK+ W+ W+ +P ++ + + ++ V++ + Sbjct: 276 QGSGKSLTMVWLAKWIREHQPDARVLLVTDRTELDEQIEKVFNGVNEQIYRTTSGADLLD 335 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY-SEERPDTFVGPHNTHGMAVFNDEASG 202 + + + D K + E + VF DEA Sbjct: 336 TLNKSQEWLICSLVHKFRGSDDDKALDQAGEDFIRELNAKIPKDFKAKGNLFVFVDEAHR 395 Query: 203 -------------TPDIINKSILGF-FTELNPNRFWIMTSN 229 P+ + G + + Sbjct: 396 TQSGKMHQAMKQLMPEAMFIGFTGTPLLKTDKETSIETFGT 436 >gi|85712760|ref|ZP_01043804.1| General secretion pathway protein, ATPase [Idiomarina baltica OS145] gi|85693400|gb|EAQ31354.1| General secretion pathway protein, ATPase [Idiomarina baltica OS145] Length = 309 Score = 38.4 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 22/188 (11%), Positives = 45/188 (23%), Gaps = 7/188 (3%) Query: 90 KTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLH 149 K+ A ++ I T K L + L +P + S Sbjct: 26 KSHDQAAKVVLTALNTGEGFIKVTGEVGTG-KTLLCR---RLLEEIPDYFYTAYVPDSYL 81 Query: 150 PSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209 + Q +G+++ + H + + DEA P+ + Sbjct: 82 NPDQLRRAVAQELGVETADIESEHPLARALQDKLLEINHAGRAVVLIVDEAQALPEDSLE 141 Query: 210 SIL---GFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFH 266 ++ TE I+ F + T + + Sbjct: 142 ALRLLSNLETESRKLLHIILVGQPELDERLAQHNFRQLRQRISFSHRLTAMNARETAQYI 201 Query: 267 EGIISRYG 274 + G Sbjct: 202 GHRMRIAG 209 >gi|229496387|ref|ZP_04390104.1| CRISPR-associated helicase Cas3 domain protein [Porphyromonas endodontalis ATCC 35406] gi|229316706|gb|EEN82622.1| CRISPR-associated helicase Cas3 domain protein [Porphyromonas endodontalis ATCC 35406] Length = 750 Score = 38.4 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 35/240 (14%), Positives = 68/240 (28%), Gaps = 21/240 (8%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 K PL H + EF++ +H ++ +P+I+ + G GKT + L Sbjct: 215 KDSPLNHA------RAEFLQKCRIH----GSSHDPSIYSLFL--PTGGGKTLSSMAWALE 262 Query: 101 LISTRPGMSIICIANSETQLKNT--LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 II + + + T ++ ++ +L H +M + W Sbjct: 263 SAIRNDSSRIIYVIPYTSIITQTAEIFKQIFGEEYVLEHHSELDMGDNEEYDR-WKLLTE 321 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE- 217 I + R HN + DE P + +L Sbjct: 322 NWDAPIIITTNVQMFESLYASRTSRCRKLHNICNSVIVFDEVQMFPSALLNPMLRAVESL 381 Query: 218 ---LNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYG 274 N N + + +++ ++ QI+ V D Sbjct: 382 SLCFNANILLCTATQP--VFTQSFEVAGRESSNFYSIQIEIEDVVLYDKELFSAFERVRY 439 >gi|237798821|ref|ZP_04587282.1| ATP-dependent DNA helicase DinG [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021674|gb|EGI01731.1| ATP-dependent DNA helicase DinG [Pseudomonas syringae pv. oryzae str. 1_6] Length = 357 Score = 38.4 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 28/101 (27%), Gaps = 5/101 (4%) Query: 51 PHRWQL----EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 P Q E + + + A+ AG G GKT A + Sbjct: 25 PRYGQRLMIAEVAKVLGDIDTDEEGRRSGDPAVVAVEAGTGTGKTVAYAIAAIPTAKAAG 84 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147 +I A Q + ++ ++ + F + Sbjct: 85 KRLVIATATVALQ-EQIVYKDLPDLMRNSGLNFTFALAKGR 124 >gi|221369953|ref|YP_002521049.1| hypothetical protein RSKD131_4116 [Rhodobacter sphaeroides KD131] gi|221163005|gb|ACM03976.1| Hypothetical Protein RSKD131_4116 [Rhodobacter sphaeroides KD131] Length = 791 Score = 38.4 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 28/244 (11%), Positives = 59/244 (24%), Gaps = 13/244 (5%) Query: 68 SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIANSETQLKNTLW 125 P + + AG G GKT + ++ L+ I+ ++ + + L Sbjct: 217 QLRVAHAPAGTRMLVEAGPGSGKTHVACERVISLVQDEGIAPSRILLLSFTRIAVAE-LR 275 Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185 + + L+ +P+ ++++ + + S G R + P Sbjct: 276 DRIGRRLNEVPNVAALQIRTFDSFAARLLSSAGVGSSGGHDASIRAATRLLRSDDPLVAD 335 Query: 186 GPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL 245 V DEA + L+P + + Sbjct: 336 AIG--QLEHVVIDEAQDLVGDRKEMCEALLALLDPGCGVTVFG----DFAQAIYGYQHKG 389 Query: 246 EDWKRYQIDTRTVEGIDSGFHEGIISRY----GLDSDVARIEILGQFPQQEVNNFIPHNY 301 + + E R + G + F Sbjct: 390 NPRATFLSEVAKRPDFTCDQLERDHRTRTAALKEMFRTVRQTLRGDPAGSRDSYFRVREE 449 Query: 302 IEEA 305 I A Sbjct: 450 IRAA 453 >gi|153930606|ref|YP_001393242.1| conjugal transfer protein TrbB [Yersinia pseudotuberculosis IP 31758] gi|152958150|gb|ABS45613.1| conjugal transfer protein TrbB [Yersinia pseudotuberculosis IP 31758] Length = 366 Score = 38.4 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 22/57 (38%) Query: 62 VDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET 118 + H + N+ + G G GKTTL ++ ++ P + I ++ Sbjct: 180 MTAHQSEVIRNAIRDHRNILVIGGTGSGKTTLVNAIINEMVVFDPSERVFIIEDTGE 236 >gi|58262276|ref|XP_568548.1| nucleolus protein [Cryptococcus neoformans var. neoformans JEC21] gi|57230722|gb|AAW47031.1| nucleolus protein, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 1069 Score = 38.4 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 37/125 (29%), Gaps = 10/125 (8%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 A++AGRG GK+ + +I + LK L+ V K L L + Sbjct: 279 VALTAGRGRGKSAALGLAIG-AALAHDYSNIFVTSPDPENLKT-LFEFVFKALDALGYEE 336 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + ++ ++ + V DE Sbjct: 337 HIDYDVVQSTNPDFKKAIVRVNIFRGHRQTIQYISPEDSHVLGQAE--------LVIIDE 388 Query: 200 ASGTP 204 A+ P Sbjct: 389 AAAIP 393 >gi|268532354|ref|XP_002631305.1| C. briggsae CBR-DNA-2 protein [Caenorhabditis briggsae] Length = 1071 Score = 38.4 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 36/124 (29%), Gaps = 11/124 (8%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH--------R 138 G GKTTL + ++ ++ A + + + N L + + + Sbjct: 679 GSGKTTLISVLI--QCLVATNKKVLLTAFTHSAVDNILGKLTKEVSNEKILRLGSSSTIK 736 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 +L G +E ++ K P + H V D Sbjct: 737 DDVRTLTLKSKLEGETSEDYYVAVRRVMKTTVPIVACTCHHVP-RELLFSYRHFDVVIID 795 Query: 199 EASG 202 EAS Sbjct: 796 EASM 799 >gi|134118842|ref|XP_771924.1| hypothetical protein CNBN1040 [Cryptococcus neoformans var. neoformans B-3501A] gi|50254528|gb|EAL17277.1| hypothetical protein CNBN1040 [Cryptococcus neoformans var. neoformans B-3501A] Length = 1069 Score = 38.4 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 37/125 (29%), Gaps = 10/125 (8%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 A++AGRG GK+ + +I + LK L+ V K L L + Sbjct: 279 VALTAGRGRGKSAALGLAIG-AALAHDYSNIFVTSPDPENLKT-LFEFVFKALDALGYEE 336 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + ++ ++ + V DE Sbjct: 337 HIDYDVVQSTNPDFKKAIVRVNIFRGHRQTIQYISPEDSHVLGQAE--------LVIIDE 388 Query: 200 ASGTP 204 A+ P Sbjct: 389 AAAIP 393 >gi|328466480|gb|EGF37623.1| ATP-dependent RNA helicase [Listeria monocytogenes 1816] Length = 396 Score = 38.4 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 34/152 (22%), Gaps = 11/152 (7%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +WQ E S + + G GKT A L I P + Sbjct: 12 EKWQEHGYETPTE-IQSAMYQPIKDGADVLAVSPTGTGKTVAYALPTLEKIEAIPKTQWL 70 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 +A S + R W L++ A + Q + K I Sbjct: 71 VLAPSHELVMQITE----------VIRSWLPSDELTVISLIGGANVKRQIEKLKKKPQII 120 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + DE Sbjct: 121 VASPGRALELIKQKKIKMHEIKTITLDECDQL 152 >gi|217964128|ref|YP_002349806.1| helicase domain protein [Listeria monocytogenes HCC23] gi|217333398|gb|ACK39192.1| helicase domain protein [Listeria monocytogenes HCC23] gi|307571305|emb|CAR84484.1| ATP-dependent RNA helicase [Listeria monocytogenes L99] Length = 442 Score = 38.4 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 34/152 (22%), Gaps = 11/152 (7%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +WQ E S + + G GKT A L I P + Sbjct: 12 EKWQEHGYETPTE-IQSAMYQPIKDGADVLAVSPTGTGKTVAYALPTLEKIEAIPKTQWL 70 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 +A S + R W L++ A + Q + K I Sbjct: 71 VLAPSHELVMQITE----------VIRSWLPSDELTVISLIGGANVKRQIEKLKKKPQII 120 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + DE Sbjct: 121 VASPGRALELIKQKKIKMHEIKTITLDECDQL 152 >gi|254932833|ref|ZP_05266192.1| helicase domain-containing protein [Listeria monocytogenes HPB2262] gi|293584386|gb|EFF96418.1| helicase domain-containing protein [Listeria monocytogenes HPB2262] gi|332312163|gb|EGJ25258.1| Helicase domain protein [Listeria monocytogenes str. Scott A] Length = 442 Score = 38.4 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 34/152 (22%), Gaps = 11/152 (7%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +WQ E S + + G GKT A L I P + Sbjct: 12 EKWQEHGYETPTE-IQSAMYQPIKDGADVLAVSPTGTGKTVAYALPTLEKIEAIPKTQWL 70 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 +A S + R W L++ A + Q + K I Sbjct: 71 VLAPSHELVMQITE----------VIRSWLPSDELTVISLIGGANVKRQIEKLKKKPQII 120 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + DE Sbjct: 121 VASPGRALELIKQKKIKMHEIKTITLDECDQL 152 >gi|11863101|ref|NP_071818.1| putative large terminase subunit [Methanothermobacter phage psiM100] gi|11692721|gb|AAG39957.1|AF301375_17 putative large terminase subunit [Methanothermobacter phage psiM100] Length = 467 Score = 38.4 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 25/194 (12%), Positives = 49/194 (25%), Gaps = 16/194 (8%) Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208 G AE EQ + E D + + + DE + + Sbjct: 126 WLGGTDAEWNEQKKRWTFPSGAALQFGHMEHEKDRYRY-QGSSYHYIAFDELTEFLESQY 184 Query: 209 KSILGFFTELNPNRFWI---MTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265 + + + + + TSN G + + R ++ Sbjct: 185 RFMFRSLRKEADDPIPLRFRATSNP-GGIGHEWVKTRFITGEKTFIPSTWRENPYLNRDE 243 Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325 +E ++ D R G + + E + + D+A Sbjct: 244 YEEALNML--DHVTRRQLKEGDWDVSIQGGVFRREWFE---IIDTPPHDLVMKLRYWDLA 298 Query: 326 ---GEGG---DKTV 333 +G D TV Sbjct: 299 ATPHDGSNDPDYTV 312 >gi|8489871|gb|AAF75791.1|AF271892_1 DEAD box protein P68 [Pisum sativum] Length = 622 Score = 38.4 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 48/166 (28%), Gaps = 24/166 (14%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGR--------GIGKTTLNAWMMLWLISTRPGMS 109 M+ + H ++ ++ A+ +GR G GKT ML +P + Sbjct: 129 IMKDIAYHEYTRPSSIQAQAMPIAL-SGRDLLGCAETGSGKTAAFTIPMLQHCLVQPPIR 187 Query: 110 ------IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163 + +A + E+++ + ++SL + +Q Sbjct: 188 RGDGPLALVLAPT---------RELAQQIEKEVQAFSRSLESLKNCIVVGGTNIEKQRSE 238 Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209 + + + V DEA D+ + Sbjct: 239 LRAGVEIAVATPGRFIDHLQQGNTSLSRISYVVLDEADRMLDMGFE 284 >gi|46907952|ref|YP_014341.1| helicase domain-containing protein [Listeria monocytogenes serotype 4b str. F2365] gi|254826031|ref|ZP_05231032.1| helicase domain-containing protein [Listeria monocytogenes FSL J1-194] gi|254992802|ref|ZP_05274992.1| ATP-dependent RNA helicase [Listeria monocytogenes FSL J2-064] gi|255520798|ref|ZP_05388035.1| ATP-dependent RNA helicase [Listeria monocytogenes FSL J1-175] gi|46881222|gb|AAT04518.1| helicase domain protein [Listeria monocytogenes serotype 4b str. F2365] gi|293595270|gb|EFG03031.1| helicase domain-containing protein [Listeria monocytogenes FSL J1-194] Length = 442 Score = 38.4 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 34/152 (22%), Gaps = 11/152 (7%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +WQ E S + + G GKT A L I P + Sbjct: 12 EKWQEHGYETPTE-IQSAMYQPIKDGADVLAVSPTGTGKTVAYALPTLEKIEAIPKTQWL 70 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 +A S + R W L++ A + Q + K I Sbjct: 71 VLAPSHELVMQITE----------VIRSWLPSDELTVISLIGGANVKRQIEKLKKKPQII 120 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + DE Sbjct: 121 VASPGRALELIKQKKIKMHEIKTITLDECDQL 152 >gi|83945168|ref|ZP_00957517.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Oceanicaulis alexandrii HTCC2633] gi|83851338|gb|EAP89194.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Oceanicaulis alexandrii HTCC2633] Length = 466 Score = 38.4 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 29/257 (11%), Positives = 51/257 (19%), Gaps = 36/257 (14%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKC--AISAGR--------GIGKTTLNAWMMLWLIST--- 104 + A+ P + A+ G G GKT ++ + Sbjct: 30 ILTAISEQ---GYETPTPIQARAIPAVMKGHDLIGLAQTGTGKTAAFVLPLVHQLLAENK 86 Query: 105 ---RPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161 + +A + E K + L+ + Q Sbjct: 87 QAPGRSCRALILAPTRELAAQI--EEQVKAYT--------AHTKLTSTVVFGGVKAGPQI 136 Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNP 220 + + V DEA D +I + Sbjct: 137 KALARGVDILVATPGRLLDHLGERKARLDLTRFVILDEADQMLDLGFIPAIRKLLRMVGE 196 Query: 221 NRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280 R +M S T +D+ + Y S Sbjct: 197 ERQTLMFSATMAPA------IRQLADDFLDHPETVAVTPPSKPVERIDQKVFYTEASAKP 250 Query: 281 RIEILGQFPQQEVNNFI 297 I P+ I Sbjct: 251 DALIDLMAPEAGKRAII 267 >gi|47094340|ref|ZP_00232038.1| helicase domain protein [Listeria monocytogenes str. 4b H7858] gi|226224325|ref|YP_002758432.1| ATP-dependent RNA helicase [Listeria monocytogenes Clip81459] gi|300764661|ref|ZP_07074652.1| hypothetical protein LMHG_11104 [Listeria monocytogenes FSL N1-017] gi|47017283|gb|EAL08118.1| helicase domain protein [Listeria monocytogenes str. 4b H7858] gi|225876787|emb|CAS05496.1| Putative ATP-dependent RNA helicase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|300514547|gb|EFK41603.1| hypothetical protein LMHG_11104 [Listeria monocytogenes FSL N1-017] Length = 442 Score = 38.4 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 34/152 (22%), Gaps = 11/152 (7%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +WQ E S + + G GKT A L I P + Sbjct: 12 EKWQEHGYETPTE-IQSAMYQPIKDGADVLAVSPTGTGKTVAYALPTLEKIEAIPKTQWL 70 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 +A S + R W L++ A + Q + K I Sbjct: 71 VLAPSHELVMQITE----------VIRSWLPSDELTVISLIGGANVKRQIEKLKKKPQII 120 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + DE Sbjct: 121 VASPGRALELIKQKKIKMHEIKTITLDECDQL 152 >gi|304383829|ref|ZP_07366287.1| DNA helicase [Prevotella marshii DSM 16973] gi|304335085|gb|EFM01357.1| DNA helicase [Prevotella marshii DSM 16973] Length = 1174 Score = 38.4 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 17/138 (12%), Positives = 36/138 (26%), Gaps = 4/138 (2%) Query: 87 GIGKTTLNAWMML--WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQ 144 G GKT++ ++ L + SI+ A + + L + + + Sbjct: 738 GTGKTSMALQYLVKEELATDGTDASILLTAYTNRAVDEICGMLADTHLPFIRLGNAYTCD 797 Query: 145 S--LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 L + ++S + T + DEA Sbjct: 798 QRFLPYLLRQAVDDCPQRSAVRERLLSTPIIVGTTSTLQSRPFLFDLKRFSLAIVDEAGQ 857 Query: 203 TPDIINKSILGFFTELNP 220 P+ +L + Sbjct: 858 IPEPGLIGLLASHRGSDA 875 >gi|154247228|ref|YP_001418186.1| double-strand break repair helicase AddA [Xanthobacter autotrophicus Py2] gi|154161313|gb|ABS68529.1| Double-strand break repair helicase AddA [Xanthobacter autotrophicus Py2] Length = 1167 Score = 38.4 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 4/82 (4%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR-PGMSIICIAN 115 + + ++ F +SA G GKT + A ++ L+ P I+C+ Sbjct: 12 DAARDPKSEATRRQSEASHPAFSAWVSANAGSGKTHVLARRVIRLLLAGTPPGRILCLTY 71 Query: 116 SETQLKNT---LWAEVSKWLSM 134 ++ N + A + +W+ + Sbjct: 72 TKAAAANMANRVLAILGRWVRL 93 >gi|116200864|ref|XP_001226244.1| hypothetical protein CHGG_10977 [Chaetomium globosum CBS 148.51] gi|88175691|gb|EAQ83159.1| hypothetical protein CHGG_10977 [Chaetomium globosum CBS 148.51] Length = 1863 Score = 38.4 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 48/185 (25%), Gaps = 14/185 (7%) Query: 15 LHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSN 74 L L + F + FP G + H Q + V H V+ + Sbjct: 1426 LSNQLWKETKLAHPLGFDVGDFPDGAEDTLSPH-------QRLIYDMVMTHDQQTVDGLH 1478 Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLI-----STRPGMS--IICIANSETQLKNTLWAE 127 P + I G GK+ + L RP +I A + Sbjct: 1479 PPPLRLNIDGRGGSGKSYAIKLISAHLYKRAVQQARPDAENIVIRSAPTGVAANGIQGTT 1538 Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187 + L + FE S + + + ID K + + P Sbjct: 1539 LHSLLRLPVGIVAFEPLSPPDVAAAQARLQSLKYLVIDEKSMISLKTMGFIDNRLRQIFP 1598 Query: 188 HNTHG 192 + Sbjct: 1599 RSNEP 1603 >gi|213404684|ref|XP_002173114.1| N-acetyltransferase Nat10 [Schizosaccharomyces japonicus yFS275] gi|212001161|gb|EEB06821.1| N-acetyltransferase Nat10 [Schizosaccharomyces japonicus yFS275] Length = 1034 Score = 38.4 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 44/147 (29%), Gaps = 19/147 (12%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 F+E++ +++AGRG GK+ + +I + S Sbjct: 265 FIESIAEKSLRGT---------VSLTAGRGRGKSAALGLAIA-AAVGHGYSNIFITSPSP 314 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177 LK L+ V K L + + + + ++ ++ D + R Sbjct: 315 ENLKT-LFEFVFKGFDALKYEEHIDYDIIQSTNPAFNNAIVRVNIFRDHRQTIQYIRPED 373 Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTP 204 V DEA+ P Sbjct: 374 AHVLGQAE--------LVIIDEAAAIP 392 >gi|213409063|ref|XP_002175302.1| DNA replication ATP-dependent helicase dna2 [Schizosaccharomyces japonicus yFS275] gi|212003349|gb|EEB09009.1| DNA replication ATP-dependent helicase dna2 [Schizosaccharomyces japonicus yFS275] Length = 1178 Score = 38.4 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 35/118 (29%), Gaps = 3/118 (2%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTT A ++ L+S G S++ + + T + N L +L ++ Sbjct: 745 GTGKTTTIACLIHTLVSN--GKSVLLSSYTHTAVDNILLKLKQFNFPILRLGSKSKVLPE 802 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + + + S DEAS P Sbjct: 803 VFSFCFGEHDTASDDITVKKIYEEPLIVATSCLGIQHP-LFSKRKFDYCLIDEASQIP 859 >gi|145631236|ref|ZP_01787009.1| DNA helicase II [Haemophilus influenzae R3021] gi|144983163|gb|EDJ90658.1| DNA helicase II [Haemophilus influenzae R3021] Length = 726 Score = 38.4 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 82/302 (27%), Gaps = 29/302 (9%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIA 114 E ++ ++ H V + AG G GKT + + WLI+ SI+ + Sbjct: 5 ELLDGLNDKQHEAVAAPLGNH---LVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 + S H+ + + +G+ + Sbjct: 62 FTNKAAAEMRHRIQSTLAKHAQHQLFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSE 121 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 + HN DE + P + + + Sbjct: 122 -DQLRLIKRLLKLHN-------FDEKAF-PPKQACWYINNKKDEGLR--------PNDIE 164 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294 + ++ ++ YQ +D + + +F V+ Sbjct: 165 DFNDRQEREWIKIYQIYQDTCDRAGLVDFAELLIRVYELFEKKPLILQRYQQRFQHILVD 224 Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354 F N I+ + + +++ D D++ + RG IE+I + Sbjct: 225 EFQDTNKIQYK-WIKILAGKTGKVMIVGD-----DDQS-IYGWRGAQIENIQKFLKDFKA 277 Query: 355 ET 356 ET Sbjct: 278 ET 279 >gi|320582191|gb|EFW96409.1| Signal recognition particle (SRP) receptor-alpha subunit [Pichia angusta DL-1] Length = 550 Score = 38.0 bits (86), Expect = 2.1, Method: Composition-based stats. Identities = 15/139 (10%), Positives = 40/139 (28%), Gaps = 5/139 (3%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 + ++ + SN ++ G+GK+T + + WL+ + I Sbjct: 325 DLLKEIQAKKASNNLPYV-----ISVVGVNGVGKSTNLSKLAYWLLQNNYRVLITACDTF 379 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 + L V+ + P + E+ + A++ ++ ++ Sbjct: 380 RSGAVEQLRTHVNNLTKLSPDQKQIELFEGGYGGADLVAKIATGAIKYAKQNNFDIVLLD 439 Query: 177 SEERPDTFVGPHNTHGMAV 195 + R Sbjct: 440 TAGRRHNDTQLMAPLASFA 458 >gi|302539315|ref|ZP_07291657.1| TtrA [Streptomyces sp. C] gi|302448210|gb|EFL20026.1| TtrA [Streptomyces sp. C] Length = 888 Score = 38.0 bits (86), Expect = 2.1, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 40/173 (23%), Gaps = 30/173 (17%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + + T + I + G GKT A L PG I+ Sbjct: 11 QKSAIRKWVGFPSRSPVPPQGT--RGTIVSATGSGKTITAAAGAL---ECFPGGRILVTV 65 Query: 115 NSETQLKNT--LWAEVSK--------------WLSMLPHRHWFEMQSLSLHPSGWYAELL 158 + L T W V L+ L R L+L + Sbjct: 66 PTLDLLAQTAQAWRLVGHKAPMIAVCSLENDPVLNELGVRTTTNPIQLALWAGAGPVVVF 125 Query: 159 EQSMGIDSKHYTITCRTYSEER---------PDTFVGPHNTHGMAVFNDEASG 202 + + + R + G DEA G Sbjct: 126 ATYASLVDREDLDAPEGQRKVRGPLEAALTGGERLYGQQMAGFDLAIVDEAHG 178 >gi|317138411|ref|XP_001816888.2| DNA replication helicase Dna2 [Aspergillus oryzae RIB40] Length = 1671 Score = 38.0 bits (86), Expect = 2.1, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 35/120 (29%), Gaps = 7/120 (5%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM--Q 144 G GKTT A ++ G S++ + + T + N L + +L ++ + Sbjct: 1181 GTGKTTTIAHII--RALVSQGKSVLLTSYTHTAVDNILLKIRDDNIRILRIGAAAKVHPE 1238 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + + + + T F DEAS Sbjct: 1239 VQQFADLAAVPKNTIEELQGAYEDSQVVATTCLGIGHSIFSQ---RIFDYCIVDEASQIT 1295 >gi|298531185|ref|ZP_07018586.1| type III restriction protein res subunit [Desulfonatronospira thiodismutans ASO3-1] gi|298509208|gb|EFI33113.1| type III restriction protein res subunit [Desulfonatronospira thiodismutans ASO3-1] Length = 1041 Score = 38.0 bits (86), Expect = 2.1, Method: Composition-based stats. Identities = 31/273 (11%), Positives = 69/273 (25%), Gaps = 39/273 (14%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 PH +Q +E ++ N + N + A G GKT + A+ + Sbjct: 309 PHPFQERILEELEQDRKVNNQHQN------LVVAATGTGKTVIAAFDFQRFFQRKQKQVK 362 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + ++ L Q + + + + Sbjct: 363 LLFVAHRQEILEQAQDTFRNVLKDHNFGDLLVGQHQAEQVKHLFCSVSMITNRRL----- 417 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 + DEA S F P +T+ Sbjct: 418 -------------GEQVGRDFYDFIIIDEAH---HGTAASYRPIFDNFEPEVLLGLTATP 461 Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFH-----EGIISRYGLDSDVARIEIL 285 R++G N+ + R + R E ++ G+ L+ D Sbjct: 462 ERMDGE-----NVLADFGNRITSEIRLPEALEEKLLCPFHYFGVADPISLNEDRFWH--H 514 Query: 286 GQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPL 318 G++ ++ +++ + + + Sbjct: 515 GRYNVAKLEKIYTGAHVQARQRLDVVLEALKRY 547 >gi|11602713|emb|CAC18543.1| translation initiation factor 4A-like protein [Echinococcus multilocularis] Length = 403 Score = 38.0 bits (86), Expect = 2.1, Method: Composition-based stats. Identities = 20/164 (12%), Positives = 43/164 (26%), Gaps = 20/164 (12%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR--------GIGKTTLNAWMMLWLI-STR 105 + + + + + + K I GR G GKT A L ++ Sbjct: 38 REDLLRGIYAYGFERPSAIQQRAIKQIIL-GRDVIAQAQSGTGKTATLAIASLQVLDIQL 96 Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 ++ ++ + + K + +L + H + E +D Sbjct: 97 RDTQVLILSPTRELALQ-----IQKVILVLGDFMNVQC-----HACYGGTNVGEDIKKLD 146 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209 + ++ + DEA D K Sbjct: 147 YGQHIVSGTPGRVFDMIKRRNLRTRTIKLLILDEADEMLDKGFK 190 >gi|83764742|dbj|BAE54886.1| unnamed protein product [Aspergillus oryzae] Length = 1673 Score = 38.0 bits (86), Expect = 2.1, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 35/120 (29%), Gaps = 7/120 (5%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM--Q 144 G GKTT A ++ G S++ + + T + N L + +L ++ + Sbjct: 1183 GTGKTTTIAHII--RALVSQGKSVLLTSYTHTAVDNILLKIRDDNIRILRIGAAAKVHPE 1240 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + + + + T F DEAS Sbjct: 1241 VQQFADLAAVPKNTIEELQGAYEDSQVVATTCLGIGHSIFSQ---RIFDYCIVDEASQIT 1297 >gi|242077806|ref|XP_002448839.1| hypothetical protein SORBIDRAFT_06g034160 [Sorghum bicolor] gi|241940022|gb|EES13167.1| hypothetical protein SORBIDRAFT_06g034160 [Sorghum bicolor] Length = 1042 Score = 38.0 bits (86), Expect = 2.2, Method: Composition-based stats. Identities = 26/220 (11%), Positives = 50/220 (22%), Gaps = 29/220 (13%) Query: 49 SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIG----------KTTLNAWMM 98 S+P++ + + + H + + RG G KT A + Sbjct: 321 SKPYKLPGKIFKMLFSHQREGLRW-------LWVLHCRGTGGILGDDMGLGKTMQVAAFL 373 Query: 99 LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 L +R ++ +A T + + S + E Sbjct: 374 AGLFHSRLVKRVLIVAPKTLLAHWTKELSIVGLKEKIRDYSGPSTNIRSYELQYAFKEGG 433 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218 D + + T + DE + + + Sbjct: 434 ILLTTYD--IVRNNYKLIRGNSYNNDDEEEGTLWNYIILDEGHLIKNNKTQRAQSLYEIP 491 Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 +R I I N E W + V Sbjct: 492 CAHRIVIS-GTP---------IQNNLKEMWTLFNFCCPDV 521 >gi|330878860|gb|EGH13009.1| ATP-dependent DNA helicase DinG [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330966522|gb|EGH66782.1| ATP-dependent DNA helicase DinG [Pseudomonas syringae pv. actinidiae str. M302091] Length = 714 Score = 38.0 bits (86), Expect = 2.2, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 28/101 (27%), Gaps = 5/101 (4%) Query: 51 PHRWQL----EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 P Q E + + + A+ AG G GKT A + Sbjct: 25 PRYGQRLMIAEVAKVLGDIDTDEEGRRSGDPAVVAVEAGTGTGKTVAYAIAAIPTAKAAG 84 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147 +I A Q + ++ ++ + F + Sbjct: 85 KRLVIATATVALQ-EQIVYKDLPDLMRNSGLNFTFSLAKGR 124 >gi|302133680|ref|ZP_07259670.1| ATP-dependent DNA helicase DinG [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 714 Score = 38.0 bits (86), Expect = 2.2, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 28/101 (27%), Gaps = 5/101 (4%) Query: 51 PHRWQL----EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 P Q E + + + A+ AG G GKT A + Sbjct: 25 PRYGQRLMIAEVAKVLGDIDTDEEGRRSGDPAVVAVEAGTGTGKTVAYAIAAIPTAKAAG 84 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147 +I A Q + ++ ++ + F + Sbjct: 85 KRLVIATATVALQ-EQIVYKDLPDLMRNSGLNFTFSLAKGR 124 >gi|198423018|ref|XP_002125988.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Ciona intestinalis] Length = 718 Score = 38.0 bits (86), Expect = 2.2, Method: Composition-based stats. Identities = 25/241 (10%), Positives = 49/241 (20%), Gaps = 16/241 (6%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR----PGMSIIC 112 E A G GKT +L + R P ++C Sbjct: 188 EINYVTPTPIQQAAIPIGLLGRDICACAATGTGKTAAFMLPVLERLLYRTQSTPITRVLC 247 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 + + H + +L + + ++ Q + + Sbjct: 248 LVPTRELAVQVY----------SVTHHLAQHSNLRICLAAGGLDMKSQEAALRQGPDIVI 297 Query: 173 CRTYSEERP-DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTR 231 + DEA D + + +L + M + Sbjct: 298 ATPGRLIDHLHNTPSFDLQMVEILILDEADRMLDEFFEDQMNEIIKLCSHHRQTMLFSAT 357 Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTV-EGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290 K + V + F +R G + F Sbjct: 358 MSEQVQELAAVSLKNPVKIFVNSNTDVAPFLRQEFIRIRETREGDREAIVAALCSRSFIS 417 Query: 291 Q 291 Sbjct: 418 N 418 >gi|124485672|ref|YP_001030288.1| hypothetical protein Mlab_0850 [Methanocorpusculum labreanum Z] gi|124363213|gb|ABN07021.1| metal dependent phosphohydrolase [Methanocorpusculum labreanum Z] Length = 834 Score = 38.0 bits (86), Expect = 2.2, Method: Composition-based stats. Identities = 25/216 (11%), Positives = 59/216 (27%), Gaps = 26/216 (12%) Query: 38 WGIKGKPLEHF--SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95 W + L+ F +P + ++ + I++ + G GKT + Sbjct: 239 WEKLAENLDEFLDQKPIIYDIDELRKEISLSCKAFGKKTSGIYRLNV--PTGGGKTLSSL 296 Query: 96 WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYA 155 L + I + T + + + + L E S ++ Sbjct: 297 RYALAHAAEWNKERIFYVIP-FTTIIDQNAKVIREALRE--DDLILEHHSNLVYEDPLDE 353 Query: 156 ELLEQSMGIDSKHYTITCRTYSE----------------ERPDTFVGPHNTHGMAVFNDE 199 + + ++Y + + + + HN + DE Sbjct: 354 NDESITGADEGRNYRLLTERWDSPIILTTTVQMLNTLFLGKAGSIRRMHNLANSIIIFDE 413 Query: 200 ASGTPDII---NKSILGFFTELNPNRFWIMTSNTRR 232 P + L F +E+ + T+ + Sbjct: 414 VQMIPVKCLRMFNTALNFLSEICGTTIILCTATQPK 449 >gi|28871262|ref|NP_793881.1| ATP-dependent helicase, DinG family [Pseudomonas syringae pv. tomato str. DC3000] gi|213971388|ref|ZP_03399502.1| ATP-dependent helicase, DinG family [Pseudomonas syringae pv. tomato T1] gi|301384365|ref|ZP_07232783.1| ATP-dependent DNA helicase DinG [Pseudomonas syringae pv. tomato Max13] gi|302062035|ref|ZP_07253576.1| ATP-dependent DNA helicase DinG [Pseudomonas syringae pv. tomato K40] gi|28854512|gb|AAO57576.1| ATP-dependent helicase, DinG family [Pseudomonas syringae pv. tomato str. DC3000] gi|213923831|gb|EEB57412.1| ATP-dependent helicase, DinG family [Pseudomonas syringae pv. tomato T1] gi|331015713|gb|EGH95769.1| ATP-dependent DNA helicase DinG [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 714 Score = 38.0 bits (86), Expect = 2.2, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 28/101 (27%), Gaps = 5/101 (4%) Query: 51 PHRWQL----EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 P Q E + + + A+ AG G GKT A + Sbjct: 25 PRYGQRLMIAEVAKVLGDIDTDEEGRRSGDPAVVAVEAGTGTGKTVAYAIAAIPTAKAAG 84 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147 +I A Q + ++ ++ + F + Sbjct: 85 KRLVIATATVALQ-EQIVYKDLPDLMRNSGLNFTFSLAKGR 124 >gi|291556498|emb|CBL33615.1| Phage terminase-like protein, large subunit [Eubacterium siraeum V10Sc8a] Length = 521 Score = 38.0 bits (86), Expect = 2.2, Method: Composition-based stats. Identities = 42/330 (12%), Positives = 87/330 (26%), Gaps = 57/330 (17%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 KG + WQ + + + N T + I + GK+ L A + L Sbjct: 26 KGTWAGKPFELIDWQEQIIRDLFGVLKPNGYRQFNTAY---IEIPKKQGKSELAAAVALL 82 Query: 101 LISTRPGMS--IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 L+ + A Q K ++ + P +LS ++ Sbjct: 83 LLCGDGEERAEVYGCAADRNQAK-IVFDVAVDMVRFCP--------ALSKRVKILESQKK 133 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTE 217 + +S + ++ H + V DE P+ + +L + Sbjct: 134 ITYLPTNSSYQVLSA---------DVANKHGFNTHGVIFDELHTQPNRKLFDVMLQGSGD 184 Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPLED-----------WKRYQIDTRTVEGIDSGFH 266 + + + + D + + D Sbjct: 185 ARMQPLYFLITTAGNDTNSICYEVHQKAIDIAEGRKVDPTFYSVIYGAAEDEDWTDPEVW 244 Query: 267 E-------------------GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307 + + + + R L Q+ +Q V ++P + Sbjct: 245 KKANPSLGITVGIDKVQAACESAQQNPGEENAFRQLRLNQWVKQSV-RWMPMEKWDACAF 303 Query: 308 REAIDDLYAPLIM-GCDIAGEGGDKTVVVF 336 + DDL + G D++ D T V Sbjct: 304 PVSEDDLEGRICYGGLDLSST-TDITAFVL 332 >gi|66827345|ref|XP_647027.1| hypothetical protein DDB_G0268868 [Dictyostelium discoideum AX4] gi|74858976|sp|Q55EJ3|NAT10_DICDI RecName: Full=N-acetyltransferase 10 homolog gi|60475087|gb|EAL73023.1| hypothetical protein DDB_G0268868 [Dictyostelium discoideum AX4] Length = 1057 Score = 38.0 bits (86), Expect = 2.2, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 45/125 (36%), Gaps = 10/125 (8%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 ++AGRG GK+ + + +I + + L NTL+ V K + + Sbjct: 277 VTLTAGRGRGKSAAL-GLAISAAVAFGYSNIFVSSPTPENL-NTLFQFVFKGFDSMEYVE 334 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + ++ ++ ++ + +T +P + V DE Sbjct: 335 HVDYELVKSTNPEFHDAIIRVNIFRSHR------QTIQYIQPQDYQKLG--QAELVVIDE 386 Query: 200 ASGTP 204 A+ P Sbjct: 387 AAAIP 391 >gi|296416165|ref|XP_002837751.1| hypothetical protein [Tuber melanosporum Mel28] gi|295633634|emb|CAZ81942.1| unnamed protein product [Tuber melanosporum] Length = 1788 Score = 38.0 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 24/246 (9%), Positives = 64/246 (26%), Gaps = 34/246 (13%) Query: 7 TDQKLEQELHEMLMHAECV--------LSFKNFVMRFFPWGIKGKPLEH----FSQPHRW 54 + L + +C S + ++ PW + + +P W Sbjct: 747 ASLPDRKILFTKVWDGKCEGFDVKLGMTSEEFQLLHCGPWMDRNMDSQSDPRVPFKPDGW 806 Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + ++ +D + A GKT + + M ++ ++ +A Sbjct: 807 QRKVLDELDQDNS------------LFVVAPTSAGKTFIAFYAMEKVLKESDEGVLVYVA 854 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 ++ + +S++ + + A + + + + Sbjct: 855 PTKALVNQIAAEVISRYKKNYRYAGKTVWAIHTRDYRMNNANECQILITVPDILQIM--- 911 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM---TSNTR 231 S ++ + DE + + + L P + N Sbjct: 912 LMSPSNAKSWTPRVKR----IIFDEVHSIGNAEDGLVWEQLLLLAPCPIIALSATVGNPE 967 Query: 232 RLNGWF 237 W Sbjct: 968 EFGSWL 973 >gi|147921747|ref|YP_684431.1| putative type III restriction-modification system, restriction subunit [uncultured methanogenic archaeon RC-I] gi|110619827|emb|CAJ35105.1| putative type III restriction-modification system, restriction subunit [uncultured methanogenic archaeon RC-I] Length = 935 Score = 38.0 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 51/166 (30%), Gaps = 18/166 (10%) Query: 54 WQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST--------R 105 W E +A V + + G GKT + A ++ W + R Sbjct: 122 WLTEAPDADKVGIIDQIQGDGGPFRRLCSKMATGSGKTIVMAMLIAWQVLNKVTYPQDSR 181 Query: 106 PGMSIICIANSETQLKNTLWAEV-------SKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 +I +A +K+ L + +++P +++ + W A Sbjct: 182 YSKNIFVVAP-GLTVKSRLGVLIPSSEGNYYDEFNIVPIADREKLRQGKVMIRNWQALAW 240 Query: 159 EQSMGIDSKHYTITCRTYSEE--RPDTFVGPHNTHGMAVFNDEASG 202 E + + K S+E + + V NDEA Sbjct: 241 ESAERLQKKKSVDKRGPKSDEAYVREVLEDMAGASNIVVINDEAHH 286 >gi|126463950|ref|YP_001045063.1| type III restriction enzyme, res subunit [Rhodobacter sphaeroides ATCC 17029] gi|126105761|gb|ABN78291.1| type III restriction enzyme, res subunit [Rhodobacter sphaeroides ATCC 17029] Length = 928 Score = 38.0 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 24/194 (12%), Positives = 41/194 (21%), Gaps = 36/194 (18%) Query: 42 GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWL 101 +P +PH Q + A G+GKT L A+ Sbjct: 221 DEPQAPPPEPHTIQR------AALAALTATRRAGHRTGLVVLA-TGLGKTWLAAFDSRHF 273 Query: 102 ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161 ++ +A+ E L + S Sbjct: 274 A------RVLFVAHREEILTQAM--------------------SSFRRIRPEARFGRYDG 307 Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPN 221 D + + R + + DE G P Sbjct: 308 TEKDDGAEILFASIQTLGRANHLRRFAPDAFDYIVVDEFHHASAGSY---RGLLDHFTPR 364 Query: 222 RFWIMTSNTRRLNG 235 +T+ R +G Sbjct: 365 FLLGLTATPDRSDG 378 >gi|67474889|ref|XP_653178.1| chromodomain-helicase-DNA-binding protein [Entamoeba histolytica HM-1:IMSS] gi|56470108|gb|EAL47792.1| chromodomain-helicase-DNA-binding protein, putative [Entamoeba histolytica HM-1:IMSS] Length = 1641 Score = 38.0 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 26/194 (13%), Positives = 55/194 (28%), Gaps = 12/194 (6%) Query: 38 WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTT-LNAW 96 W ++ P H + +Q+E + + + G+GKT + A+ Sbjct: 636 WQVQEHPYRHDNTLRSYQMEGLNWLVFNWCRGKGCILADEM--------GLGKTVQVVAF 687 Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156 + + + T E+++W M + ++ L + Sbjct: 688 FEHLRSFQKLPGPFLVVTPLSTL--EHWRREINEWTDMNVVVYLGTKENRQLIQHYEWFY 745 Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT 216 L + I + T E + H DEA + + T Sbjct: 746 LNKDEKEISKQIKFHALITTYEMIMSDYEILSQIHWQVTVVDEAQRLKNKS-SKLNKTLT 804 Query: 217 ELNPNRFWIMTSNT 230 E+ ++T Sbjct: 805 EIPSYHKILLTGTP 818 >gi|300024489|ref|YP_003757100.1| terminase [Hyphomicrobium denitrificans ATCC 51888] gi|299526310|gb|ADJ24779.1| Terminase [Hyphomicrobium denitrificans ATCC 51888] Length = 570 Score = 38.0 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 46/179 (25%), Gaps = 27/179 (15%) Query: 52 HRWQLE-FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP--GM 108 WQ + + ++ + I R GKT L A + + G Sbjct: 78 EPWQRDWIVRQAFGWMRADGTR---LYRRIIIWVPRKNGKTELIAGVSHLCLLGDGVIGA 134 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKH 168 IA+S Q + + + EL E + Sbjct: 135 ECYAIASSGDQSSIVF--------------------NAAKDMVDYSDELAEHYEVFEESL 174 Query: 169 YTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT-PDIINKSILGFFTELNPNRFWIM 226 Y R + G H + + DEA D + + + WI+ Sbjct: 175 YLRDTRALFKALTGKARGKHGLGPVYLIGDEAHEWADDKLYTYVRNGMASASEPMEWII 233 >gi|16804339|ref|NP_465824.1| putative terminase large subunit from bacteriophage A118 [Listeria monocytogenes EGD-e] gi|16411770|emb|CAD00378.1| putative terminase large subunit from Bacteriophage A118 [Listeria monocytogenes EGD-e] Length = 443 Score = 38.0 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 63/226 (27%), Gaps = 20/226 (8%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 GR K+++ + ++ P +++C+ L +++ ++ L + Sbjct: 36 IIAKGGRSSMKSSVISLKLVEKKMANPQSNMVCLRKVANTLYKSVYQQIKWALYEMGVAD 95 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND- 198 F+ + + + + + P F + Sbjct: 96 QFKFGKSPMEI-----------IHKEWGTGFYFSGCDDPAKLKSMKIPVGYVSDLWFEEL 144 Query: 199 -EASGTPDI---INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL--EDWKRYQ 252 E SG DI + I + ++ + R W + + +D+ + Sbjct: 145 AEFSGVTDIDVVEDTFIREDLPDGQEVTIYMSFNPPRNPYEWVNEYVDSKRSDDDYLIHH 204 Query: 253 IDTRT--VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 + + I D D R LG+ N + Sbjct: 205 TTYLDDEKGFLSKQIIKKIEKYKKNDLDYYRWMYLGEVIGLGDNVY 250 >gi|254234181|ref|ZP_04927504.1| hypothetical protein PACG_00015 [Pseudomonas aeruginosa C3719] gi|126166112|gb|EAZ51623.1| hypothetical protein PACG_00015 [Pseudomonas aeruginosa C3719] Length = 714 Score = 38.0 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 22/185 (11%), Positives = 48/185 (25%), Gaps = 19/185 (10%) Query: 51 PHRWQL----EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 P Q E +A+ + A+ AG G GKT + + + Sbjct: 25 PRYGQRLMIAEVAKALGAIKEDEEGHREGEPAVVAVEAGTGTGKTVAYSLAAI-ACAKAS 83 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE----------MQSLSLHPSGWYAE 156 G ++ + + + ++ L F + L + A+ Sbjct: 84 GKRLVIATATVALQEQIVHKDLPDLLRNSGLAFSFALAKGRGRYLCLSKLDVLLQEGQAQ 143 Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT 216 + D T S+ ++ + P+ I+ + T Sbjct: 144 SATAQLFADDGFNIDVDETSSKLFNQMIERLAGNR----WDGDRDSWPEAIDDAHWAQLT 199 Query: 217 ELNPN 221 + Sbjct: 200 TDHSQ 204 >gi|71275268|ref|ZP_00651555.1| conserved hypothetical protein [Xylella fastidiosa Dixon] gi|71900146|ref|ZP_00682287.1| conserved hypothetical protein [Xylella fastidiosa Ann-1] gi|71164077|gb|EAO13792.1| conserved hypothetical protein [Xylella fastidiosa Dixon] gi|71730095|gb|EAO32185.1| conserved hypothetical protein [Xylella fastidiosa Ann-1] Length = 723 Score = 38.0 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 20/154 (12%), Positives = 37/154 (24%), Gaps = 21/154 (13%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL--SMLPHRHWFEMQ 144 G GKT + A +L + P I ++ LK ++ + W +++ Sbjct: 217 GSGKTIVLALKAAYLHTQYPDWRIAVTFHT-RSLKAQFQRLITNFCIEQSGEEPDWSKIR 275 Query: 145 SLSLHPSGWYAELLEQSMGI--DSKHYTITCRTYSEERPDTFVGPHNT------------ 190 ++ + A + R S + Sbjct: 276 VINAWGAPGEAARDGLYYEYCCATGATFFDFRNASSTFGGNEKAFNGACRNALEDAADAA 335 Query: 191 ----HGMAVFNDEASGTPDIINKSILGFFTELNP 220 + DEA P K T Sbjct: 336 DAAGLYDVILLDEAQDLPPSFLKLCYAMLTPEKR 369 >gi|107100489|ref|ZP_01364407.1| hypothetical protein PaerPA_01001514 [Pseudomonas aeruginosa PACS2] gi|116048973|ref|YP_792225.1| ATP-dependent DNA helicase DinG [Pseudomonas aeruginosa UCBPP-PA14] gi|218892993|ref|YP_002441862.1| ATP-dependent DNA helicase DinG [Pseudomonas aeruginosa LESB58] gi|254239402|ref|ZP_04932724.1| hypothetical protein PA2G_00015 [Pseudomonas aeruginosa 2192] gi|296390593|ref|ZP_06880068.1| ATP-dependent DNA helicase DinG [Pseudomonas aeruginosa PAb1] gi|313105996|ref|ZP_07792257.1| Putative DNA helicase [Pseudomonas aeruginosa 39016] gi|115584194|gb|ABJ10209.1| Putative DNA helicase [Pseudomonas aeruginosa UCBPP-PA14] gi|126192780|gb|EAZ56843.1| hypothetical protein PA2G_00015 [Pseudomonas aeruginosa 2192] gi|218773221|emb|CAW29033.1| Putative DNA helicase [Pseudomonas aeruginosa LESB58] gi|310878759|gb|EFQ37353.1| Putative DNA helicase [Pseudomonas aeruginosa 39016] Length = 714 Score = 38.0 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 22/185 (11%), Positives = 48/185 (25%), Gaps = 19/185 (10%) Query: 51 PHRWQL----EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 P Q E +A+ + A+ AG G GKT + + + Sbjct: 25 PRYGQRLMIAEVAKALGAIKEDEEGHREGEPAVVAVEAGTGTGKTVAYSLAAI-ACAKAS 83 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE----------MQSLSLHPSGWYAE 156 G ++ + + + ++ L F + L + A+ Sbjct: 84 GKRLVIATATVALQEQIVHKDLPDLLRNSGLAFSFALAKGRGRYLCLSKLDVLLQEGQAQ 143 Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT 216 + D T S+ ++ + P+ I+ + T Sbjct: 144 SATAQLFADDGFNIDVDETSSKLFNQMIERLAGNR----WDGDRDSWPEAIDDAHWAQLT 199 Query: 217 ELNPN 221 + Sbjct: 200 TDHSQ 204 >gi|330795563|ref|XP_003285842.1| hypothetical protein DICPUDRAFT_149730 [Dictyostelium purpureum] gi|325084221|gb|EGC37654.1| hypothetical protein DICPUDRAFT_149730 [Dictyostelium purpureum] Length = 1325 Score = 38.0 bits (86), Expect = 2.4, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 48/135 (35%), Gaps = 10/135 (7%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 ++AGRG GK+ + + +I + + L L+ + K + + Sbjct: 277 VTLTAGRGRGKSAAL-GLAISAAVAFGYSNIFVSSPTPENLHT-LFQFIFKGFDSMEYVE 334 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + ++ ++ ++ + +T +P + V DE Sbjct: 335 HVDYELVKSTNPEFHDAIIRVNIFRTHR------QTIQYIQPQDYQKLG--QAELVVIDE 386 Query: 200 ASGTPDIINKSILGF 214 A+ P K++LG Sbjct: 387 AAAIPLPYVKNLLGP 401 >gi|262280780|ref|ZP_06058563.1| exonuclease V alpha subunit [Acinetobacter calcoaceticus RUH2202] gi|262257680|gb|EEY76415.1| exonuclease V alpha subunit [Acinetobacter calcoaceticus RUH2202] Length = 583 Score = 38.0 bits (86), Expect = 2.4, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 33/124 (26%), Gaps = 16/124 (12%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 I+ G G GKT A ++ L P + + A + + Sbjct: 143 IITGGPGTGKTYTLARIIAVLSQAIPHIRVAMAAPTGKAAQRM----------------Q 186 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 +Q+ P + L+ + + + F + DEA Sbjct: 187 EALQNSFNDPKLLESGLMSEELRNQGTQTIHRLLGMGHSQTPRFNQKQPLPYDVIVVDEA 246 Query: 201 SGTP 204 S Sbjct: 247 SMLD 250 >gi|195565815|ref|XP_002106494.1| GD16096 [Drosophila simulans] gi|194203870|gb|EDX17446.1| GD16096 [Drosophila simulans] Length = 960 Score = 38.0 bits (86), Expect = 2.4, Method: Composition-based stats. Identities = 26/207 (12%), Positives = 56/207 (27%), Gaps = 22/207 (10%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 +++A RG GK+ + + +++ + L L+ V K L ++ Sbjct: 275 MSLTAARGRGKSAAL-GLSIAAAVAFGYVNVYVTSPHPENLIT-LFEFVLKGFDALEYQE 332 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + ++ ++ S+ + + DE Sbjct: 333 HADYTIIRSTNVDYKKAIIRINITRSSRQTIQYIAPSDTHLLNAAD--------LLLIDE 384 Query: 200 ASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVE 259 A+ P L ++ M S Y+ L Q+ Sbjct: 385 AAAIP-------LPLVKKMIGPYLVFMASTING-----YEGTGRSLSLKLISQLQKDNNA 432 Query: 260 GIDSGFHEGIISRYGLDSDVARIEILG 286 E I + D I +L Sbjct: 433 RPPLKLEESIRYQENDDIKKWLINLLC 459 >gi|50292411|ref|XP_448638.1| hypothetical protein [Candida glabrata CBS 138] gi|49527950|emb|CAG61601.1| unnamed protein product [Candida glabrata] Length = 1053 Score = 38.0 bits (86), Expect = 2.4, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 38/125 (30%), Gaps = 10/125 (8%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 A++AGRG GK+ + +I + S LK L+ + K L ++ Sbjct: 279 VALTAGRGRGKSAALGIAIA-AAVAHGYSNIFVTSPSPENLKT-LFEFIFKGFDALGYQE 336 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + ++ + D + V DE Sbjct: 337 HADYDIIQSTNPDFNKAIVRVDIKRDHRQTIQYILPQDSYVLGQAE--------LVVIDE 388 Query: 200 ASGTP 204 A+ P Sbjct: 389 AAAIP 393 >gi|327296996|ref|XP_003233192.1| nucleolar ATPase Kre33 [Trichophyton rubrum CBS 118892] gi|326464498|gb|EGD89951.1| nucleolar ATPase Kre33 [Trichophyton rubrum CBS 118892] Length = 1073 Score = 38.0 bits (86), Expect = 2.4, Method: Composition-based stats. Identities = 20/150 (13%), Positives = 41/150 (27%), Gaps = 15/150 (10%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + + S ++A RG GK+ + + +I + Sbjct: 261 QAKALLTFVDAIAEKTLRST-----VTLTAARGRGKSAAL-GVAISAAIAHGYSNIFITS 314 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 S LK L+ V K L + + L + ++ ++ + + Sbjct: 315 PSPENLKT-LFEFVFKGFDELGYLDHVDYTILQSTNPDFNKAIVRVNVHRQHRQTIQYIQ 373 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + DEA+ P Sbjct: 374 PQDAFALGQAE--------LLVIDEAAAIP 395 >gi|320354827|ref|YP_004196166.1| exodeoxyribonuclease V subunit alpha [Desulfobulbus propionicus DSM 2032] gi|320123329|gb|ADW18875.1| exodeoxyribonuclease V, alpha subunit [Desulfobulbus propionicus DSM 2032] Length = 620 Score = 38.0 bits (86), Expect = 2.4, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 32/126 (25%), Gaps = 21/126 (16%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGM-SIICIANSETQLKNTLWAEVSKWLSMLPHR 138 IS G G GKT A M+ LI+ P I A + L + + LP Sbjct: 172 VIISGGPGTGKTYTVARMLALLIALTPTKPRIALAAPTGK-AALRLRESIRRAKDALPP- 229 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + + + L H + D Sbjct: 230 ----LLATPIPEQAQTLHRLLGVHHDRPGFRHHGANPL--------------HLDLLILD 271 Query: 199 EASGTP 204 EAS Sbjct: 272 EASMID 277 >gi|315044239|ref|XP_003171495.1| N-acetyltransferase 10 [Arthroderma gypseum CBS 118893] gi|311343838|gb|EFR03041.1| N-acetyltransferase 10 [Arthroderma gypseum CBS 118893] Length = 1073 Score = 38.0 bits (86), Expect = 2.4, Method: Composition-based stats. Identities = 20/150 (13%), Positives = 41/150 (27%), Gaps = 15/150 (10%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + + S ++A RG GK+ + + +I + Sbjct: 261 QAKALLTFVDAIAEKTLRST-----VTLTAARGRGKSAAL-GVAISAAIAHGYSNIFITS 314 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 S LK L+ V K L + + L + ++ ++ + + Sbjct: 315 PSPENLKT-LFEFVFKGFDELGYLDHVDYTILQSTNPDFNKAIVRVNVHRQHRQTIQYIQ 373 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + DEA+ P Sbjct: 374 PQDAFALGQAE--------LLVIDEAAAIP 395 >gi|302661292|ref|XP_003022315.1| hypothetical protein TRV_03526 [Trichophyton verrucosum HKI 0517] gi|291186255|gb|EFE41697.1| hypothetical protein TRV_03526 [Trichophyton verrucosum HKI 0517] Length = 1073 Score = 38.0 bits (86), Expect = 2.4, Method: Composition-based stats. Identities = 20/150 (13%), Positives = 41/150 (27%), Gaps = 15/150 (10%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + + S ++A RG GK+ + + +I + Sbjct: 261 QAKALLTFVDAIAEKTLRST-----VTLTAARGRGKSAAL-GVAISAAIAHGYSNIFITS 314 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 S LK L+ V K L + + L + ++ ++ + + Sbjct: 315 PSPENLKT-LFEFVFKGFDELGYLDHVDYTILQSTNPDFNKAIVRVNVHRQHRQTIQYIQ 373 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + DEA+ P Sbjct: 374 PQDAFALGQAE--------LLVIDEAAAIP 395 >gi|302511375|ref|XP_003017639.1| hypothetical protein ARB_04521 [Arthroderma benhamiae CBS 112371] gi|291181210|gb|EFE36994.1| hypothetical protein ARB_04521 [Arthroderma benhamiae CBS 112371] Length = 1073 Score = 38.0 bits (86), Expect = 2.4, Method: Composition-based stats. Identities = 20/150 (13%), Positives = 41/150 (27%), Gaps = 15/150 (10%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + + S ++A RG GK+ + + +I + Sbjct: 261 QAKALLTFVDAIAEKTLRST-----VTLTAARGRGKSAAL-GVAISAAIAHGYSNIFITS 314 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 S LK L+ V K L + + L + ++ ++ + + Sbjct: 315 PSPENLKT-LFEFVFKGFDELGYLDHVDYTILQSTNPDFNKAIVRVNVHRQHRQTIQYIQ 373 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + DEA+ P Sbjct: 374 PQDAFALGQAE--------LLVIDEAAAIP 395 >gi|198417117|ref|XP_002122030.1| PREDICTED: hypothetical protein [Ciona intestinalis] Length = 1156 Score = 38.0 bits (86), Expect = 2.4, Method: Composition-based stats. Identities = 21/151 (13%), Positives = 32/151 (21%), Gaps = 28/151 (18%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL--------------------WA 126 G GK+ L + P I I + + W Sbjct: 343 GSGKSQLVCAYVKHFNIQHPSSIIWSIECKDHSAMDASLVSLRKAVFSSQLLSEGQHDWR 402 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 EV L ++ L W L + + + T Sbjct: 403 EVFVQLKKTGVHILLLLEDLQKGMDDWSENLQTVVDSVLNYDKSYIIGTSRNALTIRDFD 462 Query: 187 PH-------NTHGMAVFND-EASGTPDIINK 209 H + + D EAS D Sbjct: 463 LHKVNGFTLDEAVNFLMQDREASEDEDEPWA 493 >gi|148828339|ref|YP_001293092.1| DNA-dependent helicase II [Haemophilus influenzae PittGG] gi|148719581|gb|ABR00709.1| DNA helicase II [Haemophilus influenzae PittGG] Length = 726 Score = 38.0 bits (86), Expect = 2.4, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 80/302 (26%), Gaps = 29/302 (9%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIA 114 E ++ ++ V + AG G GKT + + WLI+ SI+ + Sbjct: 5 ELLDGLNDKQREAVAAPLGNH---LVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 + S H+ + +G+ + Sbjct: 62 FTNKAAAEMRHRIQSTLAKHAQHQLVGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSE 121 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 + HN DE + P + + + Sbjct: 122 -DQLRLIKRLLKLHN-------FDEKAF-PPKQACWYINNKKDEGLR--------PNDIE 164 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294 + ++ ++ YQ +D + + +F V+ Sbjct: 165 DFNDRQEREWIKIYQIYQDTCDRAGLVDFAELLIRVYELFEKKPLILQRYQQRFQHILVD 224 Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354 F N I+ + + +++ D D++ + RG IE+I + Sbjct: 225 EFQDTNKIQYK-WIKILAGKTGQVMIVGD-----DDQS-IYGWRGAQIENIQKFLKDFKA 277 Query: 355 ET 356 ET Sbjct: 278 ET 279 >gi|332969134|gb|EGK08167.1| ATP-dependent helicase [Desmospora sp. 8437] Length = 947 Score = 38.0 bits (86), Expect = 2.4, Method: Composition-based stats. Identities = 33/262 (12%), Positives = 74/262 (28%), Gaps = 18/262 (6%) Query: 43 KPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI 102 P+ R Q ++ + + + I+ G G+GKT ++ LI Sbjct: 86 TPILGSDVTTRGQAAMDDSDYQYVPA-QVALERLRPRILIADGVGLGKTIEAGVLLSELI 144 Query: 103 STRPGMSIICIANSE--TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 G ++ +A QL+ +W S L L ++ + + Sbjct: 145 RRGRGRRVLVVAPRSMLEQLQKEMWTRFSIPLMRLDSIGIARIRREIPQNKNPFHYYDKV 204 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP-DIINKSILGFFTELN 219 + ID+ R N AV+ DE+ +++ L Sbjct: 205 IISIDTLKNDDRYR----------HFLENCTWDAVWIDESHNVANQNTDRNRLATLLAHR 254 Query: 220 PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279 + + ++ + L+ + T E + + + Sbjct: 255 THSLILTSATPHNGKPESFATLLRMLDPTSVANPEKITPEEVQHLVVRRFKNDVLPQTPG 314 Query: 280 AR----IEILGQFPQQEVNNFI 297 + +++ +E I Sbjct: 315 FKEVHDVQVECPTTPEEDQLLI 336 >gi|301169926|emb|CBW29530.1| DNA-dependent ATPase I and helicase II [Haemophilus influenzae 10810] Length = 727 Score = 38.0 bits (86), Expect = 2.4, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 80/302 (26%), Gaps = 29/302 (9%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIA 114 E ++ ++ V + AG G GKT + + WLI+ SI+ + Sbjct: 6 ELLDGLNDKQREAVAAPLGNH---LVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 62 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 + S H+ + +G+ + Sbjct: 63 FTNKAAAEMRHRIQSTLAKHAQHQLVGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSE 122 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 + HN DE + P + + + Sbjct: 123 -DQLRLIKRLLKLHN-------FDEKAF-PPKQACWYINNKKDEGLR--------PNDIE 165 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294 + ++ ++ YQ +D + + +F V+ Sbjct: 166 DFNDRQEREWIKIYQIYQDTCDRAGLVDFAELLIRVYELFEKKPLILQRYQQRFQHILVD 225 Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354 F N I+ + + +++ D D++ + RG IE+I + Sbjct: 226 EFQDTNKIQYK-WIKILAGKTGQVMIVGD-----DDQS-IYGWRGAQIENIQKFLKDFKA 278 Query: 355 ET 356 ET Sbjct: 279 ET 280 >gi|164661731|ref|XP_001731988.1| hypothetical protein MGL_1256 [Malassezia globosa CBS 7966] gi|159105889|gb|EDP44774.1| hypothetical protein MGL_1256 [Malassezia globosa CBS 7966] Length = 1210 Score = 38.0 bits (86), Expect = 2.4, Method: Composition-based stats. Identities = 13/118 (11%), Positives = 31/118 (26%), Gaps = 4/118 (3%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GK+T A ++ L G ++ +++ + + + + + +L + Sbjct: 776 GTGKSTTIAVLVRILADM--GQCVLLCSHTHSAVDTIVSKLLD--IPVLRLGPLSRIHPR 831 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + S + DEAS Sbjct: 832 VHACALATKLGPQASAEALVDLVQDAQIVAATCLATNDAALARRTFDVCIMDEASQIT 889 >gi|119503223|ref|ZP_01625307.1| arginine/ornithine transport system ATPase [marine gamma proteobacterium HTCC2080] gi|119460869|gb|EAW41960.1| arginine/ornithine transport system ATPase [marine gamma proteobacterium HTCC2080] Length = 326 Score = 38.0 bits (86), Expect = 2.4, Method: Composition-based stats. Identities = 19/144 (13%), Positives = 48/144 (33%), Gaps = 6/144 (4%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q E H +++ + I+ G+GK+T L L+ ++++ + Sbjct: 31 QREDDRESSQHLLNSLLPHTGKSIRIGITGVPGVGKSTFIEAFGLHLVRQGHRVAVLAVD 90 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 S ++ + ++ ++ ++ + PS + L ++ Sbjct: 91 PSSPLAGGSILGDKTRMEALS------REENAYIRPSPAGSALGGVALKTRESMLLCEAA 144 Query: 175 TYSEERPDTFVGPHNTHGMAVFND 198 Y +T + H +A D Sbjct: 145 GYDVIIVETVGVGQSEHQVAGMVD 168 >gi|332710560|ref|ZP_08430505.1| Superfamily I DNA/RNA helicase [Lyngbya majuscula 3L] gi|332350615|gb|EGJ30210.1| Superfamily I DNA/RNA helicase [Lyngbya majuscula 3L] Length = 727 Score = 38.0 bits (86), Expect = 2.4, Method: Composition-based stats. Identities = 21/161 (13%), Positives = 38/161 (23%), Gaps = 17/161 (10%) Query: 53 RWQLE-FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 WQ E + + + G GKT L + P +I Sbjct: 235 DWQQEHIGKEIPPGFQRLRGIA-------------GSGKTVLLCQKAAHMHLKHPDWTIG 281 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + L + + V +WL + + +A + G+ S + Sbjct: 282 LVF-FSRTLYDLMIGLVDRWLRRFSNGDIQYDHKTNQKLRVLHAWGAKDQPGLYSTICQL 340 Query: 172 T-CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211 R S + E +I Sbjct: 341 NGARPKSAGDTRERQPNRGLAELCKRLSEEINIKP-CFDAI 380 >gi|212542437|ref|XP_002151373.1| DNA replication helicase Dna2, putative [Penicillium marneffei ATCC 18224] gi|210066280|gb|EEA20373.1| DNA replication helicase Dna2, putative [Penicillium marneffei ATCC 18224] Length = 1670 Score = 38.0 bits (86), Expect = 2.4, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 36/121 (29%), Gaps = 9/121 (7%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS- 145 G GKTT A ++ G S++ + + T + N L + + L ++ Sbjct: 1143 GTGKTTTIAHII--RALVSQGKSVLLTSYTHTAVDNILLKIKNDNIRTLRLGAVAKVHPE 1200 Query: 146 --LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + +E+ + + P + DEAS Sbjct: 1201 VQQFVDLAAIPKNTIEELQESYQESKVVATTCLGINHP----IFNERIFDYCIVDEASQI 1256 Query: 204 P 204 Sbjct: 1257 T 1257 >gi|153938250|ref|YP_001389464.1| hypothetical protein CLI_0156 [Clostridium botulinum F str. Langeland] gi|152934146|gb|ABS39644.1| conserved hypothetical protein [Clostridium botulinum F str. Langeland] Length = 1350 Score = 38.0 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 7/102 (6%), Positives = 32/102 (31%), Gaps = 6/102 (5%) Query: 40 IKGKPLEHFSQPHRWQL---EFMEAV-DVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNA 95 + + + + +W+ + + + ++ + G GK+ A Sbjct: 239 EEKEIEDDYIHKDQWKECKEDILFPLDANEEQMSIVKKICENEAILVQGPPGTGKSHTIA 298 Query: 96 WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 ++ ++ G ++ + + L+ + + + Sbjct: 299 NLICHFLAH--GKKVLITSETSRALRVLINKIPEDIKPLCVN 338 >gi|91783626|ref|YP_558832.1| putative ATP-dependent RNA helicase, rhlE [Burkholderia xenovorans LB400] gi|91687580|gb|ABE30780.1| Putative ATP-dependent RNA helicase, rhlE [Burkholderia xenovorans LB400] Length = 523 Score = 38.0 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 23/228 (10%), Positives = 53/228 (23%), Gaps = 30/228 (13%) Query: 81 AISAGR--------GIGKTTLNAWMMLWLISTRPGM------SIICIANSETQLKNTLWA 126 A+ GR G GKT A +L + ++ + + + L + Sbjct: 76 AVLGGRDVMAAAQTGTGKTAGFALPLLQRLVQHGPAVSSNRARVLVLVPTRELAEQVLQS 135 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 + + + L + + Q M + + + Sbjct: 136 FI----------DYGKGLDLRFLAAYGGVSINPQMMKLRKGVDVLVATPGRLLDLNRQNA 185 Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246 + DEA D+ L P R + + + I + Sbjct: 186 VQLDQVQTLVLDEADRMLDLGFARELNAVFAALPVRRQTLLFSATFTDDIRAMAAGILRD 245 Query: 247 DWKRYQIDTRTVEGIDSGFHEGIISRYGL--DSDVARIEILGQFPQQE 292 + + + + D+ + G + Sbjct: 246 PVNI----SVSPPNATASKIRQWVVTVDKKNKPDLFMHLVAGNNWRHA 289 >gi|310778840|ref|YP_003967173.1| terminase GpA [Ilyobacter polytropus DSM 2926] gi|309748163|gb|ADO82825.1| terminase GpA [Ilyobacter polytropus DSM 2926] Length = 603 Score = 38.0 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 22/184 (11%), Positives = 44/184 (23%), Gaps = 28/184 (15%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 +Q + ME + P +F+ + +GKT + + + P ++ Sbjct: 51 PYQRKMMECITD----------PLVFEITVMTSSQVGKTEILLNAIGRYMHLDP-CPMMV 99 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 + + K V+ + P S S + + Sbjct: 100 VQPTVEMAKTFSKDRVAPMVRDTPSLKKLVKDSRSR------DSGNTVMQKMFPGGHITF 153 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG-FFTELNPNRFW----IMT 227 ++ + + DE P E FW I Sbjct: 154 V------GANSPSALASRPIRIILADEVDRFPKSAGDEGDPLTLAEKRTTTFWNRKHIRV 207 Query: 228 SNTR 231 S Sbjct: 208 STPT 211 >gi|257058465|ref|YP_003136353.1| signal transduction protein with Nacht domain [Cyanothece sp. PCC 8802] gi|256588631|gb|ACU99517.1| putative signal transduction protein with Nacht domain [Cyanothece sp. PCC 8802] Length = 1235 Score = 38.0 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 5/96 (5%) Query: 69 NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL--KNTLWA 126 N N + A+ G GKT + W++S + I N Q ++ ++ Sbjct: 104 NNRNHKEKKPRIALLGPAGTGKTLTLQKIAHWILSQTEDLPIWLSPNQWKQAGVEDYIY- 162 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162 +WL+ + L + + A L + Sbjct: 163 --HQWLAQAATNYHSGKYPLKVWQESFEALLNRGQV 196 >gi|218245429|ref|YP_002370800.1| putative signal transduction protein with Nacht domain [Cyanothece sp. PCC 8801] gi|218165907|gb|ACK64644.1| putative signal transduction protein with Nacht domain [Cyanothece sp. PCC 8801] Length = 1235 Score = 38.0 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 5/96 (5%) Query: 69 NVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL--KNTLWA 126 N N + A+ G GKT + W++S + I N Q ++ ++ Sbjct: 104 NNRNHKEKKPRIALLGPAGTGKTLTLQKIAHWILSQTEDLPIWLSPNQWKQAGVEDYIY- 162 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSM 162 +WL+ + L + + A L + Sbjct: 163 --HQWLAQAATNYHSGKYPLKVWQESFEALLNRGQV 196 >gi|326481174|gb|EGE05184.1| nucleolar ATPase Kre33 [Trichophyton equinum CBS 127.97] Length = 1028 Score = 38.0 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 20/150 (13%), Positives = 41/150 (27%), Gaps = 15/150 (10%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + + S ++A RG GK+ + + +I + Sbjct: 261 QAKALLTFVDVIAEKTLRST-----VTLTAARGRGKSAAL-GVAISAAIAHGYSNIFITS 314 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 S LK L+ V K L + + L + ++ ++ + + Sbjct: 315 PSPENLKT-LFEFVFKGFDELGYLDHVDYTILQSTNPDFNKAIVRVNVHRQHRQTIQYIQ 373 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + DEA+ P Sbjct: 374 PQDAFALGQAE--------LLVIDEAAAIP 395 >gi|326476357|gb|EGE00367.1| nucleolar ATPase Kre33 [Trichophyton tonsurans CBS 112818] Length = 1045 Score = 38.0 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 20/150 (13%), Positives = 41/150 (27%), Gaps = 15/150 (10%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + + S ++A RG GK+ + + +I + Sbjct: 233 QAKALLTFVDVIAEKTLRST-----VTLTAARGRGKSAAL-GVAISAAIAHGYSNIFITS 286 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 S LK L+ V K L + + L + ++ ++ + + Sbjct: 287 PSPENLKT-LFEFVFKGFDELGYLDHVDYTILQSTNPDFNKAIVRVNVHRQHRQTIQYIQ 345 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + DEA+ P Sbjct: 346 PQDAFALGQAE--------LLVIDEAAAIP 367 >gi|316977464|gb|EFV60560.1| DEAD-box ATP-dependent RNA helicase 1 [Trichinella spiralis] Length = 570 Score = 38.0 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 20/171 (11%), Positives = 48/171 (28%), Gaps = 6/171 (3%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSI--ICIANSETQLKNT--LWAEVSKWLSML 135 IS+ G GKT +++ + RP I + I + + ++++ +K+ + Sbjct: 92 ICISSPTGSGKTLCYVLPIIYALRDRPMPRIRALVIVPTAELVDQVYQVFSQFAKYAKLK 151 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 E + + D T P + + + Sbjct: 152 VVSISGEKSLKRDYNKIYETTPGGLCATCDVLISTPGRLLEHLFGPHR-SSFNLQYLRFL 210 Query: 196 FNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246 DEA ++L + + + + + D + Sbjct: 211 VFDEADFLLRDDYYALLLKASGYRNSIEETVYCS-NDDSTTCCDAMALDRN 260 >gi|260222887|emb|CBA32903.1| hypothetical protein Csp_B16360 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 705 Score = 38.0 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 2/70 (2%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCA--ISAGRGIGKTTLNAWMMLWLISTRPGMS 109 Q + E V +P K I AG G+GK+ A + + R Sbjct: 22 RAGQHQMAETVAATLAQADIGEHPNPTKAIAVIQAGTGVGKSAAYASTAIAMALERKTRV 81 Query: 110 IICIANSETQ 119 II A Q Sbjct: 82 IISTATVALQ 91 >gi|332830085|gb|EGK02713.1| hypothetical protein HMPREF9455_00963 [Dysgonomonas gadei ATCC BAA-286] Length = 1119 Score = 38.0 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 21/143 (14%), Positives = 40/143 (27%), Gaps = 9/143 (6%) Query: 82 ISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWF 141 I G GKT++ A ++ +I+ +A + + + + + Sbjct: 703 IVGPPGTGKTSIFARQLIERFYAGENTNILVMAYTNRAVDELCASICQAFGESEDECDRY 762 Query: 142 EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER---------PDTFVGPHNTHG 192 L Y L Q++ + + RT R + Sbjct: 763 IRIGSELSCGEGYRHRLLQNISYQAGNRKELIRTIDSTRIFVGTLASITGKPELFDLKNF 822 Query: 193 MAVFNDEASGTPDIINKSILGFF 215 DEAS + +L F Sbjct: 823 NIAIIDEASQILEPQIIGLLPLF 845 >gi|123441982|ref|YP_001005965.1| terminase, ATPase subunit [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088943|emb|CAL11753.1| probable terminase, ATPase subunit [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 572 Score = 38.0 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 42/321 (13%), Positives = 79/321 (24%), Gaps = 35/321 (10%) Query: 39 GIKGKPLEHFSQPHRWQLE--FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAW 96 G K P HFS QL F + + H + I I R IG T + Sbjct: 100 GRKKLPKNHFSDEQIEQLRVRFYDGLYEHQKRWYKAKSLAITIRNILKSRQIGATWYFSR 159 Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156 L G + I ++ S Q +++ E++ + S Sbjct: 160 EALIDALET-GRNQIFLSASRAQAHQ-----FKRFIIKFAAEVGVELKGDPIMLSNGAEL 213 Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN-----THGMAVFNDEASGTPDIINK-- 209 + ++ YT F+ + + S ++ Sbjct: 214 HFLGTSAASAQSYTGNLYFDEYFWTSNFINLRSVAAGMATQTGLIETYFSTISSEEHEAY 273 Query: 210 --SILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHE 267 F + + T + + WK+ + + + + Sbjct: 274 CFWSGELFNDGRKKADRVNIDITHKN---LKNGKICADRQWKQI-VTVKDAAALGFDRID 329 Query: 268 GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSRE------------AIDDLY 315 D + Q F I + Sbjct: 330 VDDLIAKKSPDEFNNLYMCQPITNGERPFSYSELINCGVDGWNAGVWDDWRPYSPRPLGN 389 Query: 316 APLIMGCDIA--GEGGDKTVV 334 +P+ +G D G+GGD + Sbjct: 390 SPVWIGYDPNGEGDGGDSAGL 410 >gi|145229155|ref|XP_001388886.1| hypothetical protein ANI_1_586014 [Aspergillus niger CBS 513.88] gi|134054986|emb|CAK36994.1| unnamed protein product [Aspergillus niger] Length = 1068 Score = 38.0 bits (86), Expect = 2.6, Method: Composition-based stats. Identities = 21/150 (14%), Positives = 41/150 (27%), Gaps = 15/150 (10%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + + S A++A RG GK+ + +I + Sbjct: 261 QAKALLTFADAIAEKTLRST-----VALTAARGRGKSAALGVAIA-AAVAHGYSNIFITS 314 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 S LK L+ V K L + + L + ++ ++ + + Sbjct: 315 PSPENLKT-LFEFVFKGFDALGYLDHVDYTILQSTNPDFNKAIVRVNIHRQHRQTIQYIQ 373 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + DEA+ P Sbjct: 374 PQDAHVLGQAE--------LLVIDEAAAIP 395 >gi|30248838|ref|NP_840908.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas europaea ATCC 19718] gi|30180433|emb|CAD84745.1| DEAD/DEAH box helicase:HD domain [Nitrosomonas europaea ATCC 19718] Length = 680 Score = 38.0 bits (86), Expect = 2.6, Method: Composition-based stats. Identities = 20/145 (13%), Positives = 40/145 (27%), Gaps = 7/145 (4%) Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT--LWAEVSKWL 132 P +F + G GKT + L +I + + L+ T ++ ++ Sbjct: 270 PGLFSLTV--PTGGGKTLSSTAFALNHAMHHGKQRVIYVIPYTSILEQTAEIFRKIFGDE 327 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG 192 +++ H + + + + + HN Sbjct: 328 NVIEHHSNLDPDKEDSRSRLATENWDAPIIVTTNVQFFESLFAAR---TSRCRKLHNIVN 384 Query: 193 MAVFNDEASGTPDIINKSILGFFTE 217 V DEA P IL + Sbjct: 385 SVVVLDEAQLLPPEFLAPILHVMQD 409 >gi|61098422|ref|NP_001012958.1| N-acetyltransferase 10 [Gallus gallus] gi|53133462|emb|CAG32060.1| hypothetical protein RCJMB04_16p3 [Gallus gallus] Length = 1019 Score = 38.0 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 49/152 (32%), Gaps = 19/152 (12%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 + L+F+EA+ + A++A RG GK+ + + +I Sbjct: 262 KAVLKFIEAISEKTLRST---------VALTAARGRGKSAAL-GLAIVGAVAFGYSNIFV 311 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 + S L L+ + K L ++ + + + + ++ ++ + + Sbjct: 312 TSPSPDNLHT-LFEFIFKGFDALQYQEHLDYEIIQSLNPEFNKAVVRVNVFKEHRQTIQY 370 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + V DEA+ P Sbjct: 371 IHPADSVKLGQAE--------LVVIDEAAAIP 394 >gi|257869123|ref|ZP_05648776.1| PhoH family protein [Enterococcus gallinarum EG2] gi|257803287|gb|EEV32109.1| PhoH family protein [Enterococcus gallinarum EG2] Length = 324 Score = 38.0 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 30/202 (14%), Positives = 49/202 (24%), Gaps = 22/202 (10%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT L M + + II + + L + + Sbjct: 140 GTGKTFLAVVMAIAALKKGQVQKIILTRPA------------VEAGENLGFLPGDLKEKV 187 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + Y L + + R E P ++ V DEA + Sbjct: 188 DPYLRPVYDALY--QIFGMDHTNRLMERGVIEIAPLAYMRGRTLEDAFVILDEAQ---NT 242 Query: 207 INKSILGFFTELNPNRFWIMTSNT-----RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI 261 + F T L N I+ +T + LE + + Sbjct: 243 TIAQMKMFLTRLGFNSKMIVNGDTSQIDLPKGTTSGLIHAQRALEAIPKIAFAHFEAGDV 302 Query: 262 DSGFHEGIISRYGLDSDVARIE 283 I R +SD Sbjct: 303 VRHPVVADIIRAYEESDSKEQR 324 >gi|85001273|ref|XP_955355.1| regulator of nonsense transcripts-related protein [Theileria annulata strain Ankara] gi|65303501|emb|CAI75879.1| regulator of nonsense transcripts-related protein, putative [Theileria annulata] Length = 1189 Score = 38.0 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 38/137 (27%), Gaps = 14/137 (10%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 I G GKT + ++ P + I+ +A+S N + A K + L Sbjct: 719 TLIQGPPGTGKTHVACAIIDCWAKLNPNIRILAVADSNIAADNLIDALTKKNIQALRIGQ 778 Query: 140 WFEM--------------QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185 E L L G Y E + + S+ + Sbjct: 779 SSEYELQEESIKNLDRYQTYLKLKMGGHYKEAKNLKVLLYSEAIKQHNIIIATCVGSGND 838 Query: 186 GPHNTHGMAVFNDEASG 202 N V DE S Sbjct: 839 LLSNYQFSHVIIDECSQ 855 >gi|251771227|gb|EES51808.1| putative helicase [Leptospirillum ferrodiazotrophum] Length = 1039 Score = 38.0 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 39/259 (15%), Positives = 71/259 (27%), Gaps = 35/259 (13%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P+ +Q E +E + V K + A G GKT + A L P + Sbjct: 302 PYPFQEEILEKLA------VEREVHGRTKNLVVAATGTGKTVIAALDFRRLREKMPRARL 355 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + +A+ L+ +L F L P G L + S+ Sbjct: 356 LFVAHRREILEQSLLT-----FRRALGDPNFGRILLPDGPPGGSEHLFVSVQLLASRSLL 410 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT 230 + + H + L+P +T+ Sbjct: 411 DSLSPDYFDVVVVDEVHHGEAPTY-----------------RRLLSRLSPRILLGLTATP 453 Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVAR-IEIL-GQF 288 R +G + + R E I G DS R + G++ Sbjct: 454 ERSDGLDIRSWFDGR-----IAAEIRLPEAIGRGLLVPFHYFGVSDSVDYRSVRWERGRY 508 Query: 289 PQQEVNNFIPHNYIEEAMS 307 +++N I + + + Sbjct: 509 NLSDLDNVITGDDLRAGII 527 >gi|161502580|ref|YP_001569692.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863927|gb|ABX20550.1| hypothetical protein SARI_00626 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 564 Score = 37.6 bits (85), Expect = 2.7, Method: Composition-based stats. Identities = 28/190 (14%), Positives = 58/190 (30%), Gaps = 19/190 (10%) Query: 54 WQLEFMEAVDVHCHSNVNNSNPTIFKC------AISAGRGIGKTTLNAWMMLWLISTRPG 107 WQ + V H N + P + G G GK+TL M+L + Sbjct: 320 WQTLELRNVVFHYQDNAFSVGPINLTIHCGELLFLIGGNGSGKSTLA--MLLTGLYQPQS 377 Query: 108 MSII----CIANSETQLKNTLWAEV--SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161 +I+ IA + + L++ V WL + + +L + Sbjct: 378 GAILLDGQPIAAGQPEDYRKLFSAVFTDVWLFDRLLGPQGKPANPALVDKWLEHLKMTHK 437 Query: 162 MGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN-----KSILGFFT 216 + ++ + +++ + + DE + D + +L Sbjct: 438 LELNDGRILNLNLSKGQKKRIALLLALAEERDIILLDEWAADQDPHFRREFYQVLLPLMQ 497 Query: 217 ELNPNRFWIM 226 ++ F I Sbjct: 498 KMGKTIFAIS 507 >gi|117620721|ref|YP_858279.1| hypothetical protein AHA_3837 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562128|gb|ABK39076.1| conserved hypothetical protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 688 Score = 37.6 bits (85), Expect = 2.7, Method: Composition-based stats. Identities = 41/350 (11%), Positives = 83/350 (23%), Gaps = 86/350 (24%) Query: 39 GIKGKPLEHFSQPHRWQ-----LEFMEAVDVHCHSNVNNSNPTIFKCAISAG-RGIGKTT 92 G K L + WQ + + + + + RG GK++ Sbjct: 143 GEKALELTPPATTTPWQPVGPARPLSCDQARALPAIHKVLHGHRRRPLVLSADRGRGKSS 202 Query: 93 LNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSG 152 L L+ +P + I+ A S+ + L+A ++ L +P P Sbjct: 203 LLGLAAAELLRQQPDLQIVVTAPSQATVAT-LFAHAARALEDVP---QLLAGLSYCSPDR 258 Query: 153 WYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212 E L+ + DEA+ P + + Sbjct: 259 LVHEPLQPD--------------------------------LLLVDEAAAIPTPL---LE 283 Query: 213 GFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLED----WKRYQ--IDTRTVEGIDSGF- 265 F F+ F L+ W+ R Sbjct: 284 AMLARHGRIVFATTEHGYEGTGRGFHLRFKRVLDRETPGWQEIHLAEPIRWSSRDPLEPL 343 Query: 266 ------HEGIISRYGLDSDVARIEILGQFPQQEVNNFI----------------PHNYIE 303 + + + + Y+ Sbjct: 344 VFRLLGLNAEVETPPAPTQPGWRRLEQDALAADEGLLHRVFGLLVLAHYQTTPSDLRYLL 403 Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFD--WSAK 351 E+ + + P ++G +V R G I + + + W+ + Sbjct: 404 ESPTLDIHLLEQGPHLLGV----------ALVAREGEIADELAEAIWAGR 443 >gi|300865509|ref|ZP_07110299.1| Pentapeptide repeat protein [Oscillatoria sp. PCC 6506] gi|300336498|emb|CBN55449.1| Pentapeptide repeat protein [Oscillatoria sp. PCC 6506] Length = 727 Score = 37.6 bits (85), Expect = 2.8, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 40/157 (25%), Gaps = 6/157 (3%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 E + +D P + AG GKT L + P I + + Sbjct: 229 ERLYELDFQQEHIGKEIPPGFQRMRGIAG--SGKTVLLCQKAAHIHLKHPDWDIALVFFT 286 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 L + + V +WL + + +A + G+ S Sbjct: 287 -RTLYDLMIGLVDRWLRRFTNGDVQYDSKTNKKLRILHAWGGKNQPGLYSTICEFNGVRS 345 Query: 177 S--EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSI 211 E P+ + E I + + Sbjct: 346 RTAGETPER-QPNRGLAELCKRLSEEIKIEPIFDAIL 381 >gi|296811440|ref|XP_002846058.1| N-acetyltransferase 10 [Arthroderma otae CBS 113480] gi|238843446|gb|EEQ33108.1| N-acetyltransferase 10 [Arthroderma otae CBS 113480] Length = 1073 Score = 37.6 bits (85), Expect = 2.8, Method: Composition-based stats. Identities = 20/150 (13%), Positives = 41/150 (27%), Gaps = 15/150 (10%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + + S ++A RG GK+ + + +I + Sbjct: 261 QAKALLTFVDAIAEKTLRST-----VTLTAARGRGKSAAL-GVAVSAAIAHGYSNIFITS 314 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 S LK L+ V K L + + L + ++ ++ + + Sbjct: 315 PSPENLKT-LFEFVFKGFDELGYLDHVDYTILQSTNPDFNKAIVRVNVHRQHRQTIQYIQ 373 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + DEA+ P Sbjct: 374 PQDAFALGQAE--------LLVIDEAAAIP 395 >gi|171692537|ref|XP_001911193.1| hypothetical protein [Podospora anserina S mat+] gi|170946217|emb|CAP73018.1| unnamed protein product [Podospora anserina S mat+] Length = 1920 Score = 37.6 bits (85), Expect = 2.8, Method: Composition-based stats. Identities = 28/259 (10%), Positives = 61/259 (23%), Gaps = 29/259 (11%) Query: 32 VMRFFPWGIKGKPLEHFS----QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRG 87 + P G+ ++ Q +QL+ + + +N G Sbjct: 1062 MNFQNPTGMGDVEIDQPKLLNCQLKEYQLKGLNWLVNLYEQGINGILADEM--------G 1113 Query: 88 IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147 +GKT + +M +L + + L N E++K++ ++ + Sbjct: 1114 LGKTVQSISVMAYLAEKYDIWGPFLVVAPASTLHN-WQQEITKFVPEFKVLPYWGTAADR 1172 Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207 + + T + + DEA Sbjct: 1173 KVLRKF---WDRKHTTYKKDAAFHVMITSYQLVVSDVAYFQKMKWQYMILDEAQAIKSSS 1229 Query: 208 NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW---KRYQIDTRTVEGIDSG 264 S + ++T I N E W S Sbjct: 1230 -SSRWKCLLSFHCRNRLLLTGTP---------IQNNMQELWALLHFIMPSLFDSHDEFSE 1279 Query: 265 FHEGIISRYGLDSDVARIE 283 + I + + + Sbjct: 1280 WFSKDIESHAQSNTKLNQD 1298 >gi|317035030|ref|XP_001400925.2| ATP-dependent helicase dcl2 [Aspergillus niger CBS 513.88] Length = 1407 Score = 37.6 bits (85), Expect = 2.8, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 46/157 (29%), Gaps = 20/157 (12%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P +Q+E EA ++ G G GKT + ++ + + P I Sbjct: 19 PRSYQVEMFEA-------------SLKENIIVTMGTGSGKTHIALLRIIKELESNPHKLI 65 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + + L + +S + + R + + L + + + M + + Sbjct: 66 WFLTPTVA-LCLQQFKFLSDNIPAVRARTLTSLDKVELWTEQPVWDAILKEMQVVVSTHA 124 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207 + S T + DEA Sbjct: 125 VLADAMSHG------FVKITQLGLMIFDEAHHCMRRH 155 >gi|158706449|sp|A2R345|DCL21_ASPNC RecName: Full=Dicer-like protein 2-1; Includes: RecName: Full=Endoribonuclease dcl2-1; Includes: RecName: Full=ATP-dependent helicase dcl2-1 Length = 1387 Score = 37.6 bits (85), Expect = 2.8, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 46/157 (29%), Gaps = 20/157 (12%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSI 110 P +Q+E EA ++ G G GKT + ++ + + P I Sbjct: 19 PRSYQVEMFEA-------------SLKENIIVTMGTGSGKTHIALLRIIKELESNPHKLI 65 Query: 111 ICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYT 170 + + L + +S + + R + + L + + + M + + Sbjct: 66 WFLTPTVA-LCLQQFKFLSDNIPAVRARTLTSLDKVELWTEQPVWDAILKEMQVVVSTHA 124 Query: 171 ITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207 + S T + DEA Sbjct: 125 VLADAMSHG------FVKITQLGLMIFDEAHHCMRRH 155 >gi|312212396|emb|CBX92479.1| hypothetical protein [Leptosphaeria maculans] Length = 1753 Score = 37.6 bits (85), Expect = 2.8, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 35/118 (29%), Gaps = 3/118 (2%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTT A ++ G S++ + + T + N L + L ++ Sbjct: 1206 GTGKTTTIAHII--RTLVAKGKSVLLTSYTHTAVDNILLKIRDDKIGTLRLGASAKVHPE 1263 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + AE + S+ + + + DEAS Sbjct: 1264 VREFAILAAEP-KGSVEELERSWMEPPVVATTCLTINHPLFSRRVFDYCIVDEASQIT 1320 >gi|288947725|ref|YP_003445108.1| ATP-dependent DNA helicase, RecQ family [Allochromatium vinosum DSM 180] gi|288898241|gb|ADC64076.1| ATP-dependent DNA helicase, RecQ family [Allochromatium vinosum DSM 180] Length = 1715 Score = 37.6 bits (85), Expect = 2.8, Method: Composition-based stats. Identities = 21/169 (12%), Positives = 42/169 (24%), Gaps = 14/169 (8%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICI 113 + + + + P + AG G GKT + + WL+ I+ + Sbjct: 1077 RRILVDLRNPAQQAIVAAPPEG-SLLVLAGPGSGKTRVIVHRVAWLLRQGMAHPQDIMVL 1135 Query: 114 ANSETQLKNT---LWAEV------SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGI 164 A + + + LWA V ++ S ++ + Sbjct: 1136 AYNRSAVSEIRHRLWALVGPEAVGVSVQTVHGLAMRLTGTSYAVALERGEKIDFTTVLRQ 1195 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213 + R E + + DE I Sbjct: 1196 ATARLKQAEREDVSESTERDRLLAG--LRFLLIDEYQDINGEHYDLISA 1242 >gi|86159143|ref|YP_465928.1| PhoH-like protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85775654|gb|ABC82491.1| PhoH-like protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 354 Score = 37.6 bits (85), Expect = 2.8, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 35/129 (27%), Gaps = 14/129 (10%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT L M + + R I+ + + L + + Sbjct: 143 GTGKTYLAMAMAVSYLVERRVKRIVLTRPA------------VEAGERLGFLPGDIAEKV 190 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + + + L M K R E P F+ + + DEA T Sbjct: 191 NPYLRPLHDALF--DMVDYEKATAFIERGTVEVAPLAFMRGRTLNDAFIILDEAQNTTAE 248 Query: 207 INKSILGFF 215 K L Sbjct: 249 QMKMFLTRL 257 >gi|55379689|ref|YP_137539.1| signal recognition 54 kDa protein [Haloarcula marismortui ATCC 43049] gi|74552458|sp|Q5UY20|SRP54_HALMA RecName: Full=Signal recognition 54 kDa protein; AltName: Full=SRP54 gi|55232414|gb|AAV47833.1| signal recognition 54 kDa protein [Haloarcula marismortui ATCC 43049] Length = 469 Score = 37.6 bits (85), Expect = 2.8, Method: Composition-based stats. Identities = 21/228 (9%), Positives = 47/228 (20%), Gaps = 14/228 (6%) Query: 13 QELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNN 72 +E+ L+ A+ + + + + P W L + V Sbjct: 33 KEIQRSLLQADVDVGLVQDLSNSIETRALDEEPPAGTTPRDWVLRIVYEELVDLVGESTE 92 Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 ++ G GKTT A M W + +II + Sbjct: 93 LPLEEQTIMLAGLYGSGKTTTAAKMAWWFSTKGLRPAIIQTDTDRPGAYD--------QS 144 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN--- 189 + R + ++ + + Sbjct: 145 KEMAERAEVDFYGDPDEDDPVKIARDGLEATENADVRIVDTAGRDGLNEELIEQIERIEQ 204 Query: 190 ---THGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 + D A G + ++ + + Sbjct: 205 EVQPDRDLLVLDAAMGQSAKSQAADFEAAIGIDGVVITKLDGTAKGGG 252 >gi|224371767|ref|YP_002605931.1| putative ATP-dependent DNA helicase [Desulfobacterium autotrophicum HRM2] gi|223694484|gb|ACN17767.1| putative ATP-dependent DNA helicase [Desulfobacterium autotrophicum HRM2] Length = 1740 Score = 37.6 bits (85), Expect = 2.9, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 46/175 (26%), Gaps = 19/175 (10%) Query: 56 LEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICI 113 + +++++ H + ++P + AG G GKT WLI + SI+ + Sbjct: 1107 KKIIQSLEDHTQEAIVAASPE-KNILVLAGPGSGKTRTIVHRCAWLIKAKSIDPASILVL 1165 Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173 Q L + + L + G S T+ Sbjct: 1166 C-FNHQAMIELRKRIRALTGRSANAVTAM-TYHGFAMRLTGRSFLAKQTGPASGKKTMGF 1223 Query: 174 RTYSEERPDTFVGPH--------------NTHGMAVFNDEASGTPDIINKSILGF 214 +E + G + DE D + I Sbjct: 1224 DAIIDEAVEMLNGEREIVGIDQSETRQILLAQYRYLLVDEYQEIDDRQYRFISAL 1278 >gi|94677005|ref|YP_588596.1| DNA helicase II [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94220155|gb|ABF14314.1| DNA helicase II [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 646 Score = 37.6 bits (85), Expect = 2.9, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 3/76 (3%) Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLI--STRPGMSIICIANSETQLKNTL 124 + + + + AG G GKT + + WL+ P SI+ + + Sbjct: 12 NKQKEAVSAPLGNILVLAGAGSGKTRVLTHRIAWLLAVENNPPSSILAVTFTNKAATEMY 71 Query: 125 WAEVSKWLSMLPHRHW 140 + + L P W Sbjct: 72 YR-IKNILGKHPCGMW 86 >gi|325687746|gb|EGD29767.1| phage terminase large subunit [Streptococcus sanguinis SK72] Length = 530 Score = 37.6 bits (85), Expect = 3.0, Method: Composition-based stats. Identities = 36/330 (10%), Positives = 79/330 (23%), Gaps = 56/330 (16%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ + + + + N T + + + GK+ L A + Sbjct: 48 PWQEQIVRDLFGIVKEDGNRQFLTAY---VEIPKKNGKSELAAA----IALYLLYADGEA 100 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 A + A + F++ + S + + Sbjct: 101 SAEVYGAACDRNQASIV-----------FDVAKQMVLMSRALEKRSKVMGATKRIINYSN 149 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT-- 230 Y +T H + + DE P+ +L + + T Sbjct: 150 AGFYQVLSAETG-TKHGLNVSGLVFDEIHAQPNRHLYDVLTKGSGDAREQPLFFIITTAG 208 Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVE------------------------------G 260 N Y++ LE K + D+ Sbjct: 209 NDKNSICYELHTKALEILKGRKKDSSFYPVVYGLSEEEDWNDEENWLKANPSLGHTIGID 268 Query: 261 IDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLI 319 + + + +V + L + V +IP + ++ + Sbjct: 269 RVREAYLNALDNPAEE-NVFKQLRLNIWTNSAVT-WIPEHIYDKGSQPIDVEILKGRDCY 326 Query: 320 MGCDIAGEGGDKTVVVFRRGNIIEHIFDWS 349 G D++ D T V + ++ Sbjct: 327 AGLDLSST-SDITAFVLIFPPR-REVENYQ 354 >gi|116194234|ref|XP_001222929.1| hypothetical protein CHGG_03715 [Chaetomium globosum CBS 148.51] gi|88179628|gb|EAQ87096.1| hypothetical protein CHGG_03715 [Chaetomium globosum CBS 148.51] Length = 1361 Score = 37.6 bits (85), Expect = 3.0, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 49/185 (26%), Gaps = 14/185 (7%) Query: 15 LHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSN 74 L L + F + FP G + P Q + V H V+ + Sbjct: 880 LSNQLWKETKLAHPLGFDVGDFPDGAEDT-----LSPQ--QRLIYDMVMTHDQQTVDGLH 932 Query: 75 PTIFKCAISAGRGIGKTT---LNAWMMLWLIST--RPGMS--IICIANSETQLKNTLWAE 127 P + I G GK+ L + + RP +I A + Sbjct: 933 PPPLRLNIDGRGGSGKSYAIKLISAYLYKRAVQQARPDAENIVIRSAPTGVAANGIQGTT 992 Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGP 187 + L + FE S + + + ID + + + P Sbjct: 993 LHSLLRLPVGIVAFEPLSPPDVAAAQARLQSLKYLVIDEETMISLKTMGFIDNRLRHIFP 1052 Query: 188 HNTHG 192 + Sbjct: 1053 RSNEP 1057 >gi|300214917|gb|ADJ79333.1| ATP-dependent RNA helicase [Lactobacillus salivarius CECT 5713] Length = 426 Score = 37.6 bits (85), Expect = 3.1, Method: Composition-based stats. Identities = 29/242 (11%), Positives = 56/242 (23%), Gaps = 30/242 (12%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 E F++P Q + A G GKT + +L I + Sbjct: 12 EGFTEPTLIQKYVYPKLAEG------------KNVVGLAPTGSGKTLAYSLPLLEKILPK 59 Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 G ++ +A S+ R W ++ LS+ A + Q + Sbjct: 60 DGSQLLIMAPSQELAAQLT----------NTIRPWAKLLDLSVIGLLGGANVKRQIEKLK 109 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRF 223 + ++ DEA + + + Sbjct: 110 KHPEVVIGTPGRLLNLIKLKKLKLHKIESIVIDEADEMLGDEDSLNDVREIVSHCPSEAQ 169 Query: 224 WIMTSNTRRLN-GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI 282 S T + F + +E + D +I Sbjct: 170 ISFFSATEAPILSELHRWFGVDVEKIDVRKED-----NTRGEVTNYMIETPTRKRTEMLR 224 Query: 283 EI 284 + Sbjct: 225 RL 226 >gi|46110288|ref|XP_382202.1| hypothetical protein FG02026.1 [Gibberella zeae PH-1] gi|84029313|sp|Q4IL82|INO80_GIBZE RecName: Full=Putative DNA helicase INO80 Length = 1904 Score = 37.6 bits (85), Expect = 3.1, Method: Composition-based stats. Identities = 31/247 (12%), Positives = 59/247 (23%), Gaps = 29/247 (11%) Query: 32 VMRFFPWGIKGKPLEHFS----QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRG 87 + P G+ +E Q +QL+ + + +N G Sbjct: 1022 MNFQNPTGLGDVEIEQPKLINAQLKEYQLKGLNWLVNLYEQGINGILADEM--------G 1073 Query: 88 IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147 +GKT + +M +L + + L N E++K++ ++ S Sbjct: 1074 LGKTVQSISVMAYLAEKHDIWGPFLVVAPASTLHN-WQQEIAKFVPEFKILPYWGGASDR 1132 Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207 + + C T + + DEA Sbjct: 1133 KVLRKF---WDRKHTTYRKDAPFHVCVTSYQLVVSDVAYFQKMRWQYMILDEAQAIKSSQ 1189 Query: 208 NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW---KRYQIDTRTVEGIDSG 264 S + ++T I N E W S Sbjct: 1190 -SSRWKALLNFHCRNRLLLTGTP---------IQNNMQELWALLHFIMPSLFDSHDEFSE 1239 Query: 265 FHEGIIS 271 + I Sbjct: 1240 WFSKDIE 1246 >gi|296423868|ref|XP_002841474.1| hypothetical protein [Tuber melanosporum Mel28] gi|295637714|emb|CAZ85665.1| unnamed protein product [Tuber melanosporum] Length = 993 Score = 37.6 bits (85), Expect = 3.1, Method: Composition-based stats. Identities = 20/150 (13%), Positives = 41/150 (27%), Gaps = 15/150 (10%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + + S ++AGRG GK+ + +I + Sbjct: 263 QAKAIMTFVDAITEKTLRST-----VTLTAGRGRGKSAALGVAIA-AAVAHGYSNIFITS 316 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 S LK L+ + K L + + + + ++ ++ + + Sbjct: 317 PSPENLKT-LFEFIFKGFDALNYSDHLDYDIIQSTNPAFNKAIVRVNIHRQHRQTIQYIQ 375 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 V DEA+ P Sbjct: 376 PQDAHVLGQAE--------LVVVDEAAAIP 397 >gi|67523659|ref|XP_659889.1| hypothetical protein AN2285.2 [Aspergillus nidulans FGSC A4] gi|74681303|sp|Q5BAZ5|INO80_EMENI RecName: Full=Putative DNA helicase ino80 gi|40745240|gb|EAA64396.1| hypothetical protein AN2285.2 [Aspergillus nidulans FGSC A4] gi|259487678|tpe|CBF86533.1| TPA: Putative DNA helicase ino80 (EC 3.6.1.-) [Source:UniProtKB/Swiss-Prot;Acc:Q5BAZ5] [Aspergillus nidulans FGSC A4] Length = 1612 Score = 37.6 bits (85), Expect = 3.1, Method: Composition-based stats. Identities = 22/191 (11%), Positives = 46/191 (24%), Gaps = 23/191 (12%) Query: 87 GIGKTTLNAWMMLWLISTRP---GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEM 143 G+GKT + +M +L +I A++ E++K++ + ++ Sbjct: 826 GLGKTIQSISVMAYLAEVHNIWGPFLVIAPASTLHN----WQQEITKFVPNIKVLPYWGN 881 Query: 144 QSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + + + T + + DEA Sbjct: 882 AKDRKILRKF---WDRKHITYTKESEFHVLVTSYQLVVLDAQYFQKVKWQYMILDEAQAI 938 Query: 204 PDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW---KRYQIDTRTVEG 260 S + ++T I N E W Sbjct: 939 KSSQ-SSRWKSLLGFHCRNRLLLTGTP---------IQNNMQELWALLHFIMPTLFDSHD 988 Query: 261 IDSGFHEGIIS 271 S + I Sbjct: 989 EFSEWFSKDIE 999 >gi|167758728|ref|ZP_02430855.1| hypothetical protein CLOSCI_01070 [Clostridium scindens ATCC 35704] gi|167663646|gb|EDS07776.1| hypothetical protein CLOSCI_01070 [Clostridium scindens ATCC 35704] Length = 210 Score = 37.6 bits (85), Expect = 3.1, Method: Composition-based stats. Identities = 19/168 (11%), Positives = 46/168 (27%), Gaps = 7/168 (4%) Query: 80 CAISAGRGIGKTTLNAWMML---WLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136 + G KT + L + + + I+ + Q + + + Sbjct: 10 VIVKGMAGTAKTFYAVAVGLEKVFNVEKKEYRKILISRPN-AQFDDDIGYLPGTEQEKIS 68 Query: 137 HRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVF 196 + +L E + + +K + R E F+ + + Sbjct: 69 PLMRPIIDNLEQLIDSDEEERYKDEEELHAKIDELFSRGLIETEAMNFIRGRSFVNTYLI 128 Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244 DEA + G T I+ + ++++ + D Sbjct: 129 IDEAQNMTPKQ---VTGIITRAGKGTKVILLGDPKQIDNPYLDEQTNG 173 >gi|260654704|ref|ZP_05860194.1| UvrD/REP helicase family protein [Jonquetella anthropi E3_33 E1] gi|260630720|gb|EEX48914.1| UvrD/REP helicase family protein [Jonquetella anthropi E3_33 E1] Length = 1181 Score = 37.6 bits (85), Expect = 3.2, Method: Composition-based stats. Identities = 31/237 (13%), Positives = 60/237 (25%), Gaps = 5/237 (2%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTR-PGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 +SAG G GKT AW LW ++ P SI+ + +E + + + Sbjct: 38 TVVSAGAGTGKTWTLAWRFLWCMAQGAPAPSILTLTFTEKAAEEMRSRIAALTEGVARQA 97 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV--GPHNTHGMAVF 196 LS + L + + P + + Sbjct: 98 KEAGCVRLSEVLNEGRRCLDSAYISTIHGFCLRVIKETGLSLPVSPSCRLVSAPEEEFFW 157 Query: 197 NDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTR 256 A + W ++ D ++ Sbjct: 158 RQVADALEKNDAGWFANRLSCSPGRADWPSVLSSPWTADVL--NGREQANDIAQFSRAAE 215 Query: 257 TVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 +E G E + G + +V P+ F + +A R +++ Sbjct: 216 NLETARGGAPEDLWRSEGREKEVIESLRAAYEPEARAQVFRLRRILRDAAVRNLLEN 272 >gi|294659465|ref|XP_002770589.1| DEHA2G06820p [Debaryomyces hansenii CBS767] gi|199433984|emb|CAR65924.1| DEHA2G06820p [Debaryomyces hansenii] Length = 1531 Score = 37.6 bits (85), Expect = 3.2, Method: Composition-based stats. Identities = 19/157 (12%), Positives = 46/157 (29%), Gaps = 5/157 (3%) Query: 51 PHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGR-GIGKTTLNAWMMLWLISTRPGMS 109 P + Q + + ++ G G GKTT+ A ++ + + + Sbjct: 1046 PSKLQYDISSENFNSDQIGAFDKILNTKDYSLILGMPGTGKTTVIAQII--KLLVQNKKT 1103 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL--LEQSMGIDSK 167 ++ + + + + N L + +L ++ + ++ + Sbjct: 1104 VLLASYTHSAVDNILLKVKDYGIDILRVGSPLKVHKDIRKYVAGFDTDKQIKNYDDFIAT 1163 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + T + TH DEAS Sbjct: 1164 YMTPPVVAATCLGIGDIAFNLRTHFDYCIIDEASQVS 1200 >gi|159462656|ref|XP_001689558.1| DEAD/DEAH-box helicase [Chlamydomonas reinhardtii] gi|158283546|gb|EDP09296.1| DEAD/DEAH-box helicase [Chlamydomonas reinhardtii] Length = 485 Score = 37.6 bits (85), Expect = 3.2, Method: Composition-based stats. Identities = 22/201 (10%), Positives = 45/201 (22%), Gaps = 17/201 (8%) Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 + A G GKT + + + G +I + Sbjct: 7 DGFQRRALELFLQGQSVVVCAPTGAGKTAIAEAAA--VAALARGQRVIYTTPLKALSNQK 64 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 L+ ++ H A+++ + I T E Sbjct: 65 LFETRRRF------GHARCGLQTGDANLNPDADIVVMTTEILRNIMYRTAELAEENNT-G 117 Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIM-----TSNTRRLNGWFY 238 G + + DE D S+ P ++ +N + L W Sbjct: 118 GNGARLGNVGLIVLDEVHYLGDPHRGSVWEEVIINCPRHIQLLCMSATVANPKDLGDWIA 177 Query: 239 DI---FNIPLEDWKRYQIDTR 256 ++ + Sbjct: 178 KEHMPCETIQTRFRPVPLHWH 198 >gi|145635037|ref|ZP_01790743.1| DNA helicase II [Haemophilus influenzae PittAA] gi|145267645|gb|EDK07643.1| DNA helicase II [Haemophilus influenzae PittAA] Length = 726 Score = 37.6 bits (85), Expect = 3.2, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 81/302 (26%), Gaps = 29/302 (9%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR--PGMSIICIA 114 E ++ ++ V + AG G GKT + + WLI+ SI+ + Sbjct: 5 ELLDGLNDKQREAVAAPLGNH---LVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 + S H+ + + +G+ + Sbjct: 62 FTNKAAAEMRHRIQSTLAKHAQHQLFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSE 121 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 + HN DE + P + + + Sbjct: 122 -DQLRLIKRLLKLHN-------FDEKAF-PPKQACWYINNKKDEGLR--------PNDIE 164 Query: 235 GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVN 294 + ++ ++ YQ +D + + +F V+ Sbjct: 165 DFNDRQEREWIKIYQIYQDTCDRAGLVDFAELLIRVYELFEKKPLILQRYQQRFQHILVD 224 Query: 295 NFIPHNYIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQ 354 F N I+ + + +++ D D++ + RG IE+I + Sbjct: 225 EFQDTNKIQYK-WIKILAGKTGKVMIVGD-----DDQS-IYGWRGAQIENIQKFLKDFKT 277 Query: 355 ET 356 ET Sbjct: 278 ET 279 >gi|328773858|gb|EGF83895.1| hypothetical protein BATDEDRAFT_29142 [Batrachochytrium dendrobatidis JAM81] Length = 1016 Score = 37.6 bits (85), Expect = 3.2, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 42/125 (33%), Gaps = 10/125 (8%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 ++A RG GK+ + + + +I + S +K L+ + K L + Sbjct: 280 VTLTASRGRGKSASL-GIAIASAISYGYSNIFITSPSPENIKT-LFEFIFKGFDALGYEE 337 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + ++ + D + +T +P F + DE Sbjct: 338 HLDYDIIQSTNPAFQKSIVRVNFFRDHR------QTIQWIQPSDFGIL--AQAELLVIDE 389 Query: 200 ASGTP 204 A+ P Sbjct: 390 AAAIP 394 >gi|221122502|ref|XP_002157615.1| PREDICTED: similar to predicted protein, partial [Hydra magnipapillata] Length = 925 Score = 37.6 bits (85), Expect = 3.2, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 52/161 (32%), Gaps = 11/161 (6%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFK-CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICI 113 Q + ++ S T+ ++A RG GK+ + L T +I Sbjct: 168 QCKTLDQAKSVLKFIEVISEKTLRSTVTLTAARGRGKSAAI-GLALASAVTFGYSNIFVT 226 Query: 114 ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITC 173 + S LK L+ + K L ++ + + + + ++ ++ + + Sbjct: 227 SPSPENLKT-LFEFIFKGFDALNYQEHLDYEIIQSTNPDFNKAVVRVNIFREHRQTIQYI 285 Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGF 214 + + DEA+ P K ++G Sbjct: 286 SPTDHHKLGQAE--------LLAIDEAAAIPLPYVKQLIGP 318 >gi|156406979|ref|XP_001641322.1| predicted protein [Nematostella vectensis] gi|156228460|gb|EDO49259.1| predicted protein [Nematostella vectensis] Length = 1001 Score = 37.6 bits (85), Expect = 3.2, Method: Composition-based stats. Identities = 18/150 (12%), Positives = 44/150 (29%), Gaps = 15/150 (10%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + + + +++A RG GK+ + L ++ + Sbjct: 260 QAKALLKFIEAISEKTLRTT-----VSLTAARGRGKSAAI-GLALASAVAFGYSNMFVTS 313 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 S L L+ V K L ++ + + + + ++ ++ D + Sbjct: 314 PSPENLHT-LFEFVFKGFDALDYQEHIDYELVQSTNPEFNKAVVRINIFRDHRQTIQYIH 372 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + DEA+ P Sbjct: 373 PSDAHKLGQAE--------LLCIDEAAAIP 394 >gi|254556146|ref|YP_003062563.1| DNA replication protein [Lactobacillus plantarum JDM1] gi|254045073|gb|ACT61866.1| DNA replication protein [Lactobacillus plantarum JDM1] Length = 261 Score = 37.6 bits (85), Expect = 3.2, Method: Composition-based stats. Identities = 26/190 (13%), Positives = 54/190 (28%), Gaps = 12/190 (6%) Query: 4 LISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEF----- 58 + T ++L+ + + + + W G PL + WQ++ Sbjct: 26 KLPTKEELDHQTIDRANAGVIANRKRYYYRMSV-W-SGGVPLRFS--FNDWQVDKQPNQA 81 Query: 59 -MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 + F A++ G G+GKT+L +M L+S + A Sbjct: 82 KARELGNQAFKLARQLETNQFNVALAGGPGVGKTSLALAIMYQLMSVGQTAMFVSTAELL 141 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177 + + L + + L + E + + K RT Sbjct: 142 RLVNEKY--DAPDVRERLNYVLKDMKKVDVLVLDDFGTEGGKPTEKGFYKPVHKDLRTLM 199 Query: 178 EERPDTFVGP 187 + + Sbjct: 200 YDVANARWNL 209 >gi|302343090|ref|YP_003807619.1| metal dependent phosphohydrolase [Desulfarculus baarsii DSM 2075] gi|301639703|gb|ADK85025.1| metal dependent phosphohydrolase [Desulfarculus baarsii DSM 2075] Length = 741 Score = 37.6 bits (85), Expect = 3.3, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 45/151 (29%), Gaps = 12/151 (7%) Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSET-------QLKNTLWAE 127 P +F + G GKT + L +I + + +++ L + Sbjct: 239 PGLFSLTV--PTGGGKTYSSLAFALRHAHGHGLRRVIYVIPYTSIIDQNASVMRDALGDD 296 Query: 128 -VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 V + S LP + + AE + + I + +P Sbjct: 297 AVLEHHSSLPVNDDQKDDGAAFRRGDLAAENWDAPLVITTNVQFFESLFA--NKPGKCRK 354 Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTE 217 HN G + DEA P + L E Sbjct: 355 LHNIAGSVIILDEAQMLPRDQLRPCLAALRE 385 >gi|156053429|ref|XP_001592641.1| hypothetical protein SS1G_06882 [Sclerotinia sclerotiorum 1980] gi|154704660|gb|EDO04399.1| hypothetical protein SS1G_06882 [Sclerotinia sclerotiorum 1980 UF-70] Length = 1559 Score = 37.6 bits (85), Expect = 3.3, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 36/118 (30%), Gaps = 3/118 (2%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTT A ++ G S++ + + T + N L + +L ++ Sbjct: 1130 GTGKTTTIAHII--RALVSQGKSVLLTSYTHTAVDNILLKLRDDSIPILRLGAKAKIHPD 1187 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + E I S + S + + DEAS Sbjct: 1188 VQEFAKLAIDPKETMEEIRSVWHGTPIIATSCLGINHP-IFNERTFDYCIVDEASQIT 1244 >gi|301101790|ref|XP_002899983.1| DNA2-like helicase [Phytophthora infestans T30-4] gi|262102558|gb|EEY60610.1| DNA2-like helicase [Phytophthora infestans T30-4] Length = 1500 Score = 37.6 bits (85), Expect = 3.3, Method: Composition-based stats. Identities = 20/152 (13%), Positives = 49/152 (32%), Gaps = 5/152 (3%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 + +++ V ++ + G GKT A+ + L+ G S++ + + Sbjct: 972 DAFFELNIDQQRAVQRVLSSLDYALVLGMPGTGKTATIAYTVRVLLFL--GFSVLVTSYT 1029 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEM---QSLSLHPSGWYAELLEQSMGIDSKHYTITC 173 + + N L ++ ML + ++ S E + +++K Sbjct: 1030 HSAVDNLLLKLLAYKTPMLRIGNTAQVHPMISDFTLDRQAGREGIFSVRAMEAKMVRAQL 1089 Query: 174 RTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 + ++ V DEA+ Sbjct: 1090 VGCTCLSVNSHVLFTKRRFDFCIVDEATQITQ 1121 >gi|332289276|ref|YP_004420128.1| type I restriction enzyme EcoKI subunit R [Gallibacterium anatis UMN179] gi|330432172|gb|AEC17231.1| type I restriction enzyme EcoKI subunit R [Gallibacterium anatis UMN179] Length = 1114 Score = 37.6 bits (85), Expect = 3.3, Method: Composition-based stats. Identities = 28/240 (11%), Positives = 73/240 (30%), Gaps = 22/240 (9%) Query: 39 GIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMM 98 + F +Q+ ++AV+ ++ G GKT ++ Sbjct: 382 QKLEQEPFDFLGLRYYQVNAIKAVEQSLAEGKRE-------MLLAMATGTGKTRTITGLI 434 Query: 99 LWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 + + I+ + + + +L + + + + + Y + Sbjct: 435 HRFLKSDRFRRILFLVD-----RTSLANQANDTFNEMKVEP-------NQSLQTLYNFAV 482 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218 + I++K T ++ ++ + P + DEA + + G Sbjct: 483 NGEVEIETKVKVATVQSLVKQIFYSADQPPIDQFDCIIVDEAHRGYTLDQEMTDGELAFQ 542 Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278 N ++ S RR+ +F + + + + E +I Y +D + Sbjct: 543 NNEQY---LSTYRRVLDYFDAVKIGLTATPALHTTEIFGEPVFVYSYKEAVIDDYLVDHE 599 >gi|260892060|ref|YP_003238157.1| PhoH family protein [Ammonifex degensii KC4] gi|260864201|gb|ACX51307.1| PhoH family protein [Ammonifex degensii KC4] Length = 319 Score = 37.6 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 43/169 (25%), Gaps = 26/169 (15%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAIS--------AGRGIGKTTLNAWMMLWLISTRPGM 108 E + + AI G GKT L M + + R Sbjct: 96 EILLTTPRGKQVRPKTPGQKRYVDAIRRYDITFAIGPAGTGKTYLAVVMAVIWLRQRRIS 155 Query: 109 SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS--LSLHPSGWYAELLEQSMGIDS 166 II + E + L LP R ++ L+ S + +E + Sbjct: 156 RIILTRPAV---------EAGEKLGFLPGRLEEKVDPYLRPLYDSLYDVLGVENTERYLE 206 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF 215 + P ++ + DEA T K L Sbjct: 207 RRIIEIA-------PLAYMRGRTLEDAFIILDEAQNTTPEQMKMFLTRL 248 >gi|189189422|ref|XP_001931050.1| DNA replication helicase Dna2 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187972656|gb|EDU40155.1| DNA replication helicase Dna2 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 1298 Score = 37.6 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 34/118 (28%), Gaps = 3/118 (2%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTT A ++ G S++ + + T + N L + +L + Sbjct: 1036 GTGKTTTIAHII--RTLVAKGKSVLLTSYTHTAVDNILLKIRDDKIGILRLG-TVKKIHP 1092 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + S+ + + + + DEAS Sbjct: 1093 EVREFATLGVEPKDSVEELERSWMEPPVVATTCLTINHSLFNRRVFDYCIVDEASQIT 1150 >gi|281306698|ref|YP_003345504.1| predicted phage DNA maturase B [Pseudomonas phage phi-2] gi|271278003|emb|CBH51609.1| predicted phage DNA maturase B [Pseudomonas phage phi-2] Length = 596 Score = 37.6 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 10/74 (13%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 + ++S + A RG K+TL +W + P ++ ++ +E + Sbjct: 41 DMADFMQDCPDSSM-------VQAQRGEAKSTLACGFGIWQLIQDPRHRVMLVSGAEDKA 93 Query: 121 KN---TLWAEVSKW 131 K + + +W Sbjct: 94 KENGKLMKRTIMQW 107 >gi|292491415|ref|YP_003526854.1| capsular exopolysaccharide family [Nitrosococcus halophilus Nc4] gi|291580010|gb|ADE14467.1| capsular exopolysaccharide family [Nitrosococcus halophilus Nc4] Length = 757 Score = 37.6 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 21/147 (14%), Positives = 40/147 (27%), Gaps = 7/147 (4%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 E +V + P +SAG+G GK+T A + + G ++ Sbjct: 534 RSAFAEAYRSVRTALQFSTPKGAPKSL-LVVSAGKGEGKSTTAASLAIHFAQA--GEKVL 590 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + + L+N V + + L H ++ + S + Sbjct: 591 LV---DADLRNPSLHRVLEADNSLGLTHHLAGEATPVEISQPTTVPNLFLITAGPLPPDP 647 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFND 198 S + V D Sbjct: 648 AGLLGSAKMMSLLSTAK-EKFDHVILD 673 >gi|195164399|ref|XP_002023035.1| GL16389 [Drosophila persimilis] gi|194105097|gb|EDW27140.1| GL16389 [Drosophila persimilis] Length = 930 Score = 37.6 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 22/173 (12%), Positives = 50/173 (28%), Gaps = 5/173 (2%) Query: 41 KGKPLEHFSQPHRWQLE---FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97 PL S P E ++ ++ + V + + I G GKT + Sbjct: 605 LDPPLPFDSLPDIILTEGLHILQYLNKQQNEAVMHCLSSNTHFLIKGLPGTGKTQTLVAL 664 Query: 98 MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 + + +S++ A++ + + N + ++ L ML + S Sbjct: 665 V--RMLHLLNLSVLITAHTHSAVDNLMNRLMAYGLPMLRLGQSARINDCLEEISEANVTR 722 Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS 210 +++ ++ N DEA+ + Sbjct: 723 RCRTVDSLTRVLETPAIVGVTCLGTGHAVFRNRTFDYCIVDEATQVTPNTCEV 775 >gi|162135084|ref|YP_001595825.1| hypothetical protein [Pseudomonas phage YuA] gi|161513931|emb|CAO77757.1| hypothetical protein [Pseudomonas phage YuA] Length = 564 Score = 37.6 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 30/205 (14%), Positives = 61/205 (29%), Gaps = 12/205 (5%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 H S + AI +G GK+ L WL ++ +A + Sbjct: 8 EPFNHQREEWLRSREEEAR-AIFWEQGTGKSKLTIDTACWLWLRGLIDGVLVVAPNGVH- 65 Query: 121 KNTLWAEV-----SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 +N + E+ + + + H+ ++ + ++E T Sbjct: 66 RNWVEKEIPDHVPDEVIKHVRAFHYQSPKASTKWHKQAVKAVIEHKGFAWLTISYEAFMT 125 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 S +R + + + DEA + F + + T G Sbjct: 126 ASGKRA--LIDFFDKRRLLYVLDEAHYIKTPTAERTKSILRSAKYAPFRRVLTGTPIAQG 183 Query: 236 WFYDIFNIP---LEDWKRYQIDTRT 257 F I + WK++++ T T Sbjct: 184 PFDAYSQIKFLIEDYWKQHRLGTFT 208 >gi|294815786|ref|ZP_06774429.1| Membrane translocator [Streptomyces clavuligerus ATCC 27064] gi|326444131|ref|ZP_08218865.1| membrane translocator [Streptomyces clavuligerus ATCC 27064] gi|294328385|gb|EFG10028.1| Membrane translocator [Streptomyces clavuligerus ATCC 27064] Length = 585 Score = 37.6 bits (85), Expect = 3.5, Method: Composition-based stats. Identities = 21/162 (12%), Positives = 42/162 (25%), Gaps = 19/162 (11%) Query: 79 KCAISAGRGIGKTTLNAWM----------MLWL---ISTRPGMSIICIANSETQLKNTLW 125 + A+ G GK+TL + + + WL ++ + + + + Sbjct: 382 RLAVVGPSGSGKSTLASVLAGVAAPTGGEVRWLGRPAGELDPTAVRTLLPQQPYVFSGTL 441 Query: 126 AEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185 + ++L ++ L +D + + R Sbjct: 442 RDNLRYLRPKARDRELSATVAAIGLDALVERLGGLDTPLDPRRLSPGERQLVALGR---- 497 Query: 186 GPHNTHGMAVFNDEA-SGTPDIINKSILGFFTELNPNRFWIM 226 H T + DEA S G E I Sbjct: 498 -AHLTTAPLLILDEATSELDPEAEARAEGALAERAGAVLTIA 538 >gi|296807923|ref|XP_002844300.1| Dna2p [Arthroderma otae CBS 113480] gi|238843783|gb|EEQ33445.1| Dna2p [Arthroderma otae CBS 113480] Length = 1604 Score = 37.6 bits (85), Expect = 3.5, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 38/122 (31%), Gaps = 11/122 (9%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSML----PHRHWFE 142 G GKTT A ++ G S++ + + T + N L +L P + E Sbjct: 1103 GTGKTTTIAQII--RALVSQGKSVLLTSYTHTAVDNILLKIRDDKFRILRLGTPSKIHPE 1160 Query: 143 MQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASG 202 +Q + + + E ++ T R + DEAS Sbjct: 1161 VQQFAELAATPKNTIEELEDVYENSKVVATTCLGVNHR-----IFNTRTFDYCIVDEASQ 1215 Query: 203 TP 204 Sbjct: 1216 IT 1217 >gi|224124820|ref|XP_002319430.1| predicted protein [Populus trichocarpa] gi|222857806|gb|EEE95353.1| predicted protein [Populus trichocarpa] Length = 559 Score = 37.6 bits (85), Expect = 3.5, Method: Composition-based stats. Identities = 21/166 (12%), Positives = 48/166 (28%), Gaps = 24/166 (14%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGR--------GIGKTTLNAWMMLWLISTRP--- 106 M+ + H ++ + A+ +GR G GKT M+ +P Sbjct: 126 IMKDIAHHEYTRPTSIQAQAMTVAL-SGRDLLGCAETGSGKTAAFTIPMIQHCLAQPTVR 184 Query: 107 ---GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163 G + +A + E+++ + ++S + +Q + Sbjct: 185 RGDGPLALVLAPT---------RELAQQIEKEVKGFSRSLESFRTAIVVGGTNIADQRLE 235 Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINK 209 + + I + + DEA D+ + Sbjct: 236 LRAGVDVIVATPGRLIDHLQQGNTSLSRISFIVLDEADRMLDMGFE 281 >gi|156379137|ref|XP_001631315.1| predicted protein [Nematostella vectensis] gi|156218353|gb|EDO39252.1| predicted protein [Nematostella vectensis] Length = 298 Score = 37.6 bits (85), Expect = 3.5, Method: Composition-based stats. Identities = 15/134 (11%), Positives = 31/134 (23%), Gaps = 15/134 (11%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGM----SIICIANSETQLKNTLWAEVSKWLSML 135 A G GKT +L + RP ++ I + Sbjct: 36 VCACAATGTGKTAAFMLPILERLLYRPTQSPAIRVLVITPTRELAIQI----------HS 85 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP-DTFVGPHNTHGMA 194 + + ++ + + +L Q + + + Sbjct: 86 VTNNLSKYTNIQVCLAAGGLDLKSQEAALRKNPDIVIATPGRLVDHLHNTMSFGLQSIEI 145 Query: 195 VFNDEASGTPDIIN 208 + DEA D Sbjct: 146 LVLDEADRMLDEHF 159 >gi|320589784|gb|EFX02240.1| snf2 family helicase ATPase [Grosmannia clavigera kw1407] Length = 1885 Score = 37.6 bits (85), Expect = 3.5, Method: Composition-based stats. Identities = 29/247 (11%), Positives = 57/247 (23%), Gaps = 29/247 (11%) Query: 32 VMRFFPWGIKGKPLEHFS----QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRG 87 + P G+ +E Q +QL+ + + +N G Sbjct: 983 MNFQNPTGLGDVEIEQPKLLNAQLKEYQLKGLNWLVNLYEQGINGILADEM--------G 1034 Query: 88 IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147 +GKT + +M +L + + L N E++K++ ++ Sbjct: 1035 LGKTVQSISVMAYLAEKYDIWGPFIVVAPASTLHN-WQQEINKFVPEFKVLPYWGSAGDR 1093 Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207 + + T + + DEA Sbjct: 1094 KVLRKF---WDRKHSIYKKNAQFHVLVTSYQLVVSDVAFMSKMRWQYMILDEAQAIKSSQ 1150 Query: 208 NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW---KRYQIDTRTVEGIDSG 264 S + ++T I N E W S Sbjct: 1151 -SSRWKVLLNYHCRNRLLLTGTP---------IQNNMQELWALLHFIMPSLFDSHDEFSE 1200 Query: 265 FHEGIIS 271 + I Sbjct: 1201 WFSKDIE 1207 >gi|311693564|gb|ADP96437.1| phage terminase GpA [marine bacterium HP15] Length = 653 Score = 37.6 bits (85), Expect = 3.5, Method: Composition-based stats. Identities = 24/219 (10%), Positives = 51/219 (23%), Gaps = 18/219 (8%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 +P + ++ G +GKT L A + S + + S+ L L + + + Sbjct: 71 HPGCHRISLMWGAQVGKTQL-ALCVQGYFIAHEPKSQMMMQPSQGDLTTWLETKFNPMVD 129 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 P + S + + Q M + + + Sbjct: 130 TNPVLQDLIAKPRS------HEGVNNQRMKSYPGGFMMYAW------AGSTKTMRGRSAP 177 Query: 194 AVFNDE---ASGTPD-IINKSILGFFTELNPNRFWIMTSNTR-RLNGWFYDIFNIPLEDW 248 + DE GTP+ + + R I S + F + Sbjct: 178 LIVADEIDGYGGTPEGDEVQLLWQRAATFGDQRLLIEISTPTIKDESRIEAAFLQGDQRH 237 Query: 249 KRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ 287 + + + Sbjct: 238 FYVACPHCDHHQRLNWDRVTWDKDEDGHHLPETARYICE 276 >gi|9630534|ref|NP_046964.1| large terminase subunit [Methanobacterium phage psiM2] gi|3249594|gb|AAC27048.1| large terminase subunit [Methanobacterium phage psiM2] Length = 468 Score = 37.6 bits (85), Expect = 3.5, Method: Composition-based stats. Identities = 25/194 (12%), Positives = 48/194 (24%), Gaps = 16/194 (8%) Query: 149 HPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN 208 G AE EQ + E D + + + DE + + Sbjct: 126 WLGGTDAEWNEQKKRWTFPSGAALQFGHMEHEKDRYRY-QGSSYHYIAFDELTEFMETQY 184 Query: 209 KSILGFFTELNP---NRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265 + + + TSN G + + R ++ Sbjct: 185 RFMFRSLRKEVNDHIPLRVRATSNP-GGIGHEWVKTRFITGEKTFIPSTWRENPYLNRDE 243 Query: 266 HEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLIMGCDIA 325 +E ++ D R G + + E ++ + + D A Sbjct: 244 YEEALNML--DHVTRRQLKDGDWDVTLQGGVFKREWFE---VIDSPPNGLVMSVRYWDFA 298 Query: 326 G---EGG---DKTV 333 +G D TV Sbjct: 299 ATKPDGANDPDYTV 312 >gi|303275069|ref|XP_003056834.1| predicted protein [Micromonas pusilla CCMP1545] gi|226461186|gb|EEH58479.1| predicted protein [Micromonas pusilla CCMP1545] Length = 993 Score = 37.2 bits (84), Expect = 3.6, Method: Composition-based stats. Identities = 19/135 (14%), Positives = 48/135 (35%), Gaps = 10/135 (7%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 A++A RG GK+ + + ++ + S LK + V K L ++ Sbjct: 276 VALTAARGRGKSA-AMGIAVAGAIGMGYANVFVTSPSPENLKT-FFQFVLKGFDALGYKE 333 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + ++ ++ ++ + T + + + + DE Sbjct: 334 HLDYDIVESSNPAFGRAIVRVNV---TRVHRQTIQYILPQHHE-----RAATAELLVIDE 385 Query: 200 ASGTPDIINKSILGF 214 A+ P + + +LG Sbjct: 386 AAAIPLPVVQKLLGP 400 >gi|124248178|emb|CAJ87074.1| putative ATPase subunit of terminase [Murine cytomegalovirus (strain K181)] Length = 374 Score = 37.2 bits (84), Expect = 3.7, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 13/40 (32%) Query: 186 GPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225 + + DEA +ILGF + +I Sbjct: 1 SIRGQNFNLLIVDEAHFIKKEAFNTILGFLAQNTTKIIFI 40 >gi|9845374|ref|NP_064188.1| pR89 [Murid herpesvirus 2] gi|9800303|gb|AAF99177.1|AF232689_74 pR89 [rat cytomegalovirus Maastricht] Length = 374 Score = 37.2 bits (84), Expect = 3.7, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 13/40 (32%) Query: 186 GPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225 + + DEA +ILGF + +I Sbjct: 1 SIRGQNFNLLIVDEAHFIKKEAFNTILGFLAQNTTKIIFI 40 >gi|16799183|ref|NP_469451.1| putative terminase large subunit from bacteriophage A118 [Listeria innocua Clip11262] gi|16412525|emb|CAC95338.1| putative terminase large subunit from Bacteriophage A118 [Listeria innocua Clip11262] Length = 443 Score = 37.2 bits (84), Expect = 3.7, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 63/226 (27%), Gaps = 20/226 (8%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 GR K+++ + ++ P +++C+ L +++ ++ L + Sbjct: 36 IIAKGGRSSMKSSVISLKLVEKKMANPQSNMVCLRKVANTLYKSVYQQIKWALYEMGVAD 95 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND- 198 F+ + + + + + P F + Sbjct: 96 QFKFGKSPMEI-----------IHKEWGTGFYFSGCDDPAKLKSMKIPVGYVSDLWFEEL 144 Query: 199 -EASGTPDI---INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL--EDWKRYQ 252 E SG DI + I + ++ + R W + + +D+ + Sbjct: 145 AEFSGVTDIDVVEDTFIREDLPQGQEVTIYMSFNPPRNPYEWVNEYVDSKRSDDDYLIHH 204 Query: 253 IDTRT--VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 + + I D D R LG+ N + Sbjct: 205 TTYLDDEKGFLSKQIIKKIEKYKKNDLDYYRWMYLGEVIGLGDNVY 250 >gi|289706290|ref|ZP_06502652.1| conserved hypothetical protein [Micrococcus luteus SK58] gi|289557013|gb|EFD50342.1| conserved hypothetical protein [Micrococcus luteus SK58] Length = 577 Score = 37.2 bits (84), Expect = 3.7, Method: Composition-based stats. Identities = 38/290 (13%), Positives = 76/290 (26%), Gaps = 34/290 (11%) Query: 85 GRGIGKTTLNAWM--MLWLISTRPGMSIICIANSETQ-------LKNTLWAEVSKWLSML 135 R GK+T+++ + +L L PG + A S+ Q K L + + Sbjct: 120 PRKNGKSTISSAISGVLLLADQEPGAEVYNAAGSKEQAARVFEDAKRMLSTSKAARSRVE 179 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERP-----DTFVGPHNT 190 P + + + + S T + +T VG + Sbjct: 180 PLKDVVRVPRTASILRVLSSVAETAHGLNVSGAVVDEVHTLRRKAGLVDALETGVGARDQ 239 Query: 191 HGMAVF--NDEAS-GTPDIINKSILGFFTEL---NPNRFWIMTSNTRRLNGWFYDIFNIP 244 + DEA GTP + +P+ + ++ + + + Sbjct: 240 PLLLYITTADEAEDGTPYDEKHTYTLNVASGIISDPSFYGVVWGAEEGDDPFAESTWAKA 299 Query: 245 LEDWKRYQIDTRTVEGIDSGFHEGII-SRYGLDSDVARIEILGQFPQQEVNNFIPHNYIE 303 + + E + V + L + E Sbjct: 300 SPGFPK-------SPNRRYMETEAKKARNSPRELAVFKQLALNLRTASTSRWLDIGKWDE 352 Query: 304 EAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVF-----RRGNIIEHIFDW 348 + G D++ D T R G +E + D+ Sbjct: 353 LTARPDRARLRGRRAWAGLDLSAT-SDFTAWAVWVESTRPGYQLELLIDY 401 >gi|114567412|ref|YP_754566.1| ATP-dependent RNA helicase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338347|gb|ABI69195.1| ATP-dependent RNA helicase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 530 Score = 37.2 bits (84), Expect = 3.7, Method: Composition-based stats. Identities = 21/182 (11%), Positives = 44/182 (24%), Gaps = 11/182 (6%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT +L + G+ + + + E+S + + Sbjct: 51 GTGKTASFGIPILNRVIKGEGLQALVLCPTRELAVQVT-EEISSLSRRMRIQVLAIYGGQ 109 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA-SGTPD 205 S+ + + + V DEA Sbjct: 110 SIELQLRSLRRNPEIIVGTPG---------RLMDHMNRGTISLSPLKYVVLDEADEMLDM 160 Query: 206 IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGF 265 I ++ R + S T + + + RTV I+ + Sbjct: 161 GFLPDIQKILSQCPRERQTFLFSATLPDEVRELGTKFMKQPEIILIESPERTVPEIEQYY 220 Query: 266 HE 267 ++ Sbjct: 221 YQ 222 >gi|332969229|gb|EGK08259.1| UvrD/REP helicase subfamily [Desmospora sp. 8437] Length = 811 Score = 37.2 bits (84), Expect = 3.8, Method: Composition-based stats. Identities = 19/173 (10%), Positives = 46/173 (26%), Gaps = 11/173 (6%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 H + P + D + + ++AG G GKTT +L+L T Sbjct: 82 GHVTDPDLY-EYLCRETDFNREQYEVEHSDPKAHLLVTAGAGTGKTTALIDRLLFLCHTD 140 Query: 106 P----GMSIICIANSET--QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLE 159 P +++ + +++ L + + + + + Sbjct: 141 PEFSFDSTVMITFTNLAALEMRKRLGKRLMTYFEVTRDPRYLAWLDETRDLFLSTIHSFA 200 Query: 160 QSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSIL 212 +++ + T + DE + + S Sbjct: 201 KTLLEEVG----TATGLPAGMRLRSFREQKNRWIETCVDEFAEQHPEVFHSFR 249 >gi|158289216|ref|XP_310969.4| AGAP000169-PA [Anopheles gambiae str. PEST] gi|157018948|gb|EAA06209.4| AGAP000169-PA [Anopheles gambiae str. PEST] Length = 525 Score = 37.2 bits (84), Expect = 3.8, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 40/163 (24%), Gaps = 9/163 (5%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + G+GKT + A +M L P +I +A + + + A +P Sbjct: 33 NTLVVLPTGLGKTFIAAVVMYNLYRWYPTGKVIFMAPTRPLVAQQIEACARVV--GIPRA 90 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG------PHNTHG 192 E+ + + + G Sbjct: 91 DTAEVTGRQPRSKRATLWRSRRVFFATPQVVLADLQGTDPGGGSGEGGGGGGPLFPANQV 150 Query: 193 MAVFNDEASG-TPDIINKSILGFFTELNPNRFWIMTSNTRRLN 234 V DEA ++ E NP + S T Sbjct: 151 RLVVIDEAHKAKGRYAYTDVIRLLAETNPCFRVLALSATPGRT 193 >gi|308804275|ref|XP_003079450.1| Predicted P-loop ATPase fused to an acetyltransferase (ISS) [Ostreococcus tauri] gi|116057905|emb|CAL54108.1| Predicted P-loop ATPase fused to an acetyltransferase (ISS) [Ostreococcus tauri] Length = 1028 Score = 37.2 bits (84), Expect = 3.8, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 46/135 (34%), Gaps = 10/135 (7%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 A++A RG GK+ + + +I + S LK + + K L ++ Sbjct: 293 VALTAARGRGKSA-AMGIAVAGAVEMGYANIFVTSPSPENLKT-FFDFILKGFDALGYKE 350 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + ++ ++ + +T P T + DE Sbjct: 351 HLDYDLVESTNPAFGKCIVRINVTRRHR------QTIQYILPQ--HYERATQAELLVIDE 402 Query: 200 ASGTPDIINKSILGF 214 A+ P K++LG Sbjct: 403 AAAIPLPTVKALLGP 417 >gi|115388463|ref|XP_001211737.1| hypothetical protein ATEG_02559 [Aspergillus terreus NIH2624] gi|114195821|gb|EAU37521.1| hypothetical protein ATEG_02559 [Aspergillus terreus NIH2624] Length = 1053 Score = 37.2 bits (84), Expect = 3.8, Method: Composition-based stats. Identities = 21/150 (14%), Positives = 41/150 (27%), Gaps = 15/150 (10%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + + S ++AGRG GK+ + +I + Sbjct: 261 QAKALLTFVDAIAEKTLRST-----VTLTAGRGRGKSAALGVAIA-AAVAHGYSNIFITS 314 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 S LK L+ V K L + + L + ++ ++ + + Sbjct: 315 PSPENLKT-LFEFVFKGFDALGYLDHVDYTILQSTNPDFNKAIVRVNIHRQHRQTIQYIQ 373 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + DEA+ P Sbjct: 374 PQDAHVLGQAE--------LLVIDEAAAIP 395 >gi|320037197|gb|EFW19135.1| DNA replication helicase Dna2 [Coccidioides posadasii str. Silveira] Length = 1660 Score = 37.2 bits (84), Expect = 3.8, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 35/120 (29%), Gaps = 7/120 (5%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK--WLSMLPHRHWFEMQ 144 G GKTT A ++ G S++ + + T + N L + L + Sbjct: 1160 GTGKTTTIAQLI--RAIVAQGKSVLLASYTHTAVDNILLKIRYDGTKILRLGVPAKVHPE 1217 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + + + ++ + T ++ DEAS Sbjct: 1218 VQQFADLAGFPKKSIEEIKDSIENSQVVATTCLGINH---FIFNSRTFDYCIVDEASQIT 1274 >gi|315604922|ref|ZP_07879980.1| exopolyphosphatase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313461|gb|EFU61520.1| exopolyphosphatase [Actinomyces sp. oral taxon 180 str. F0310] Length = 1138 Score = 37.2 bits (84), Expect = 3.8, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 6/70 (8%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMS------IICIANSETQLKNTLWAE 127 + AG G GKT + +LWL++ P ++ + + +L + L A Sbjct: 27 ESPRRPLLVVAGAGSGKTETMSMRVLWLLANHPDLTPASILGLTFTRKAAGELGDRLRAR 86 Query: 128 VSKWLSMLPH 137 + +PH Sbjct: 87 IRLLAEAMPH 96 >gi|258592955|emb|CBE69264.1| putative helicase [NC10 bacterium 'Dutch sediment'] Length = 839 Score = 37.2 bits (84), Expect = 3.8, Method: Composition-based stats. Identities = 26/268 (9%), Positives = 57/268 (21%), Gaps = 31/268 (11%) Query: 32 VMRFFPWGIKGKPLEHFSQPHRWQL--EFMEA----VDVHCHSNVNNSNPTIFKCAISAG 85 ++ P G + ++ S P Q + +SA Sbjct: 10 LLIKMPKGDRPIEIDSSSMPRDAQALIDAFRDRYPFPFDPFQEEAIGLIAEGSSVIVSAP 69 Query: 86 RGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQS 145 G GKT L A ++ I + +W +++ Sbjct: 70 TGAGKT-LIAEFAIFRALAHQH-RIAYTTPLKALSNQKYADFTRQWGEETVGILTGDVKV 127 Query: 146 LSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD 205 P + ++ + V DE + Sbjct: 128 NPRAPLVVMTTEILRNKFYGGE---------------------CEGLRYVVLDECHYMGN 166 Query: 206 IINKSILGFFTELNPNRFW-IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSG 264 + ++ P + S T + + R V + Sbjct: 167 VGRGTVWEEIIINCPPEVQLVALSATVSNIREIAEWIGQTHRPIRPIHHPVRPVP-LQYL 225 Query: 265 FHEGIISRYGLDSDVARIEILGQFPQQE 292 + + + R + F + Sbjct: 226 LCDREGQLWPPEPASVRRILHAFFSDRS 253 >gi|303324363|ref|XP_003072169.1| hypothetical protein CPC735_013420 [Coccidioides posadasii C735 delta SOWgp] gi|240111879|gb|EER30024.1| hypothetical protein CPC735_013420 [Coccidioides posadasii C735 delta SOWgp] Length = 1630 Score = 37.2 bits (84), Expect = 3.8, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 35/120 (29%), Gaps = 7/120 (5%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSK--WLSMLPHRHWFEMQ 144 G GKTT A ++ G S++ + + T + N L + L + Sbjct: 1130 GTGKTTTIAQLI--RAIVAQGKSVLLASYTHTAVDNILLKIRYDGTKILRLGVPAKVHPE 1187 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + + + ++ + T ++ DEAS Sbjct: 1188 VQQFADLAGFPKKSIEEIKDSIENSQVVATTCLGINH---FIFNSRTFDYCIVDEASQIT 1244 >gi|301300149|ref|ZP_07206364.1| DEAD/DEAH box helicase [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852237|gb|EFK79906.1| DEAD/DEAH box helicase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 426 Score = 37.2 bits (84), Expect = 3.8, Method: Composition-based stats. Identities = 29/242 (11%), Positives = 56/242 (23%), Gaps = 30/242 (12%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 E F++P Q + A G GKT + +L I + Sbjct: 12 EGFTEPTLIQKYVYPKLAEG------------KNVVGLAPTGSGKTLAYSLPLLEKILPK 59 Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 G ++ +A S+ R W ++ LS+ A + Q + Sbjct: 60 DGSQLLIMAPSQELAAQLT----------NTIRPWAKLLDLSVIGLLGGANVKRQIEKLK 109 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRF 223 + ++ DEA + + + Sbjct: 110 KHPEVVIGTPGRLLNLINLKKLKLHKIESIVIDEADEMLGDEDSLNDVREIVSHCPSEAQ 169 Query: 224 WIMTSNTRRLN-GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI 282 S T + F + +E + D +I Sbjct: 170 ISFFSATEAPILSELHRWFGVDVEKIDVRKED-----NTRGEVTNYMIETPTRKRTEMLR 224 Query: 283 EI 284 + Sbjct: 225 RL 226 >gi|15596242|ref|NP_249736.1| ATP-dependent DNA helicase DinG [Pseudomonas aeruginosa PAO1] gi|9946958|gb|AAG04434.1|AE004536_13 hypothetical protein PA1045 [Pseudomonas aeruginosa PAO1] Length = 714 Score = 37.2 bits (84), Expect = 3.8, Method: Composition-based stats. Identities = 21/185 (11%), Positives = 46/185 (24%), Gaps = 19/185 (10%) Query: 51 PHRWQLEFMEAVDVHC----HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 P Q + V + A+ AG G GKT + + + Sbjct: 25 PRYGQRLMIAEVAKALGVIKEDEEGHREGEPAVVAVEAGTGTGKTVAYSLAAI-ACAKAS 83 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFE----------MQSLSLHPSGWYAE 156 G ++ + + + ++ L F + L + A+ Sbjct: 84 GKRLVIATATVALQEQIVHKDLPDLLRNSGLAFSFALAKGRGRYLCLSKLDVLLQEGQAQ 143 Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT 216 + D T S+ ++ + P+ I+ + T Sbjct: 144 SATAQLFADDGFNIDVDETSSKLFNQMIERLAGNR----WDGDRDSWPEAIDDAHWAQLT 199 Query: 217 ELNPN 221 + Sbjct: 200 TDHSQ 204 >gi|240948445|ref|ZP_04752821.1| hypothetical protein AM305_06166 [Actinobacillus minor NM305] gi|240297186|gb|EER47748.1| hypothetical protein AM305_06166 [Actinobacillus minor NM305] Length = 538 Score = 37.2 bits (84), Expect = 3.9, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 17/105 (16%) Query: 23 ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLE--FMEAVDVHCHSNVNNSNPTIFKC 80 + F+ FV +FP + PH+ QL + + S + Sbjct: 44 DVGSGFEFFVSNYFP--------HYVRSPHKSQLHHYLFKRLPEIIQSPKKCLD------ 89 Query: 81 AISAGRGIGKTTLNAWM-MLWLISTRPGMSIICIANSETQLKNTL 124 AI+A RG K+T+ + + +LW + T + + +S Q L Sbjct: 90 AIAAPRGEAKSTIVSQLFVLWCLVTNRKKYALIVMDSIDQAYPML 134 >gi|294649116|ref|ZP_06726558.1| exodeoxyribonuclease V alpha subunit [Acinetobacter haemolyticus ATCC 19194] gi|292824999|gb|EFF83760.1| exodeoxyribonuclease V alpha subunit [Acinetobacter haemolyticus ATCC 19194] Length = 601 Score = 37.2 bits (84), Expect = 4.0, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 39/157 (24%), Gaps = 23/157 (14%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKC-------AISAGRGIGKTTLNAWMMLWLISTRPG 107 Q+ + + + K I+ G G GKT A ++ L P Sbjct: 130 QMTPAIDISEYESLLEDEFQQAALKMVLQQWLSIITGGPGTGKTYTLARIIAALNQMIPD 189 Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 + I A + + +Q+ P + L+ + S Sbjct: 190 IRIAMAAPTGKAAQRM----------------QEALQNSFNDPKLIASGLVTDELRNQST 233 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + F + DEAS Sbjct: 234 QTLHRLLGMGNRQIPRFNAKQPLPYDVIVVDEASMLD 270 >gi|298208398|ref|YP_003716577.1| arginine/ornithine transport system ATPase [Croceibacter atlanticus HTCC2559] gi|83848319|gb|EAP86189.1| arginine/ornithine transport system ATPase [Croceibacter atlanticus HTCC2559] Length = 359 Score = 37.2 bits (84), Expect = 4.0, Method: Composition-based stats. Identities = 29/267 (10%), Positives = 68/267 (25%), Gaps = 9/267 (3%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + + + I+ G+GK+T LIS ++++ + Sbjct: 66 QQSTHQEKAKQLIEACLSHVKPSIRIGITGVPGVGKSTFIEAFGTSLISKGYKVAVLAVD 125 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 S ++ + ++ ++ + F S S G A +S+ + Sbjct: 126 PSSGVTHGSILGDKTRMEDLVKEDNAFIRPSPSGDSLGGVARKTRESIILCEAAGFDVIL 185 Query: 175 TYSEERPDTFVGPHNTHGMAVFN------DEASGTPDIINKSILGFFTELNPNRFWIMTS 228 + + H+ + DE G I + Sbjct: 186 IETVGVGQSETTVHSMTDFFLLLKLAGAGDELQGIKRGIIEMADAIVINKADGENIKAAK 245 Query: 229 NTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 + ++ W Q + + + +F Sbjct: 246 QAKSEFRKALHLYPEKESQW---QPKVLLASALKQEGISEVWEMIEDYKTSTKASSYFEF 302 Query: 289 PQQEVNNFIPHNYIEEAMSREAIDDLY 315 +QE N F I++ + + Sbjct: 303 RRQEQNKFWLLQTIQDRLKADFFSKPN 329 >gi|294667150|ref|ZP_06732373.1| hypothetical protein XAUC_31250 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603049|gb|EFF46477.1| hypothetical protein XAUC_31250 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 573 Score = 37.2 bits (84), Expect = 4.0, Method: Composition-based stats. Identities = 35/254 (13%), Positives = 60/254 (23%), Gaps = 35/254 (13%) Query: 80 CAIS-AGRGIGKTTLNAWMMLWLISTRP---GMSIICIANSETQLKNTLWAEVSKWLSML 135 A+ GR G T A ++ G +I A++ + + Sbjct: 54 VAVCEKGRRTGITFAQAMADTITAASSKEAGGRNIWYAADT----REKGLEYIGYVAKFA 109 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 P + + H + + + H G V Sbjct: 110 PIVARGQATRIEQHIFVDQQPDGSSRNIQAFRVRFASGFKITALS-SRPENIHGLQGD-V 167 Query: 196 FNDEASGTPD--IINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL-------- 245 DEA+ + +S R W + Sbjct: 168 DLDEAALHKNVAKTLESATALLIWGGRIRVWATHRGKKNAFNQLVQDVRAGRYGKRAGVI 227 Query: 246 -------------EDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQE 292 E + T ++ GI + YG R E+ P+ Sbjct: 228 RIAFDDAVANGLYERICAMRGTAPT-PEGKKDWYTGIRAAYGPRKAAMREELD-VVPRDG 285 Query: 293 VNNFIPHNYIEEAM 306 + IP +IE AM Sbjct: 286 DGSAIPSVWIERAM 299 >gi|162453593|ref|YP_001615960.1| protein kinase [Sorangium cellulosum 'So ce 56'] gi|161164175|emb|CAN95480.1| Protein kinase [Sorangium cellulosum 'So ce 56'] Length = 1297 Score = 37.2 bits (84), Expect = 4.0, Method: Composition-based stats. Identities = 25/192 (13%), Positives = 56/192 (29%), Gaps = 23/192 (11%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 + + A+ + + P +F AG +GKT L A P + ++ Sbjct: 449 DVLSALAASATDAFDGTCPGLFTLIGDAG--LGKTRLAAEAASIAGVPVPDVRVVAARAL 506 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 + ++ + L + P + E L +++G + + Sbjct: 507 HP-----IHGGAAQAVRALLRVALDAPRESPGDPRQFCVERLGETLGGATWEAVAAALGW 561 Query: 177 SEERPDTFVGPHNTHGMA----------------VFNDEASGTPDIINKSILGFFTELNP 220 + R G M V D+A D++ ++ + Sbjct: 562 AGPRGGRLSGEARNGLMLALAEALRRGARRGPLAVILDDADQADDVLLDALEYATLDGEG 621 Query: 221 NRFWIMTSNTRR 232 W++ + R Sbjct: 622 TPLWVVVTARPR 633 >gi|288573981|ref|ZP_06392338.1| UvrD/REP helicase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569722|gb|EFC91279.1| UvrD/REP helicase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 1160 Score = 37.2 bits (84), Expect = 4.0, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 3/99 (3%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 +SAG G GKT AW +W ++T + + + T + E+++ + +L Sbjct: 33 VVVSAGAGTGKTWTLAWRFVWAVATGRARAGEILTLTFT---DKAATEMAERIRLLMEGL 89 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 + + L + L S ++ + R E Sbjct: 90 LPKTKELPTVAAALREGLESLEDSYISTIHSFSSRVIRE 128 >gi|153000501|ref|YP_001366182.1| EcoEI R domain-containing protein [Shewanella baltica OS185] gi|151365119|gb|ABS08119.1| EcoEI R domain protein [Shewanella baltica OS185] Length = 825 Score = 37.2 bits (84), Expect = 4.1, Method: Composition-based stats. Identities = 27/190 (14%), Positives = 52/190 (27%), Gaps = 32/190 (16%) Query: 49 SQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST-RPG 107 P +QL+ + S + + + G GKT A+ ++W + R Sbjct: 180 KHPRYYQLQAINKTVEAISSGKD-------RVLLVMATGTGKTY-TAFQIIWRLWKSRAK 231 Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 I+ +A+ +N L + S + Sbjct: 232 KRILFLAD-----RNILVDQTRI------------NDFQPFGTSMTKITGRTVDPAYEIH 274 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA---SGTPDIINKSILGFFTELNPNRFW 224 T +E F + DE S + D + IL +F+ Sbjct: 275 LALYQALTGPDESQKAFKQVAPDFFDLIIIDECHRGSASDDSAWREILEYFSSAAQVGL- 333 Query: 225 IMTSNTRRLN 234 T+ + + Sbjct: 334 --TATPKETD 341 >gi|76788026|ref|YP_329369.1| prophage LambdaSa04, terminase, large subunit [Streptococcus agalactiae A909] gi|76563083|gb|ABA45667.1| prophage LambdaSa04, terminase, large subunit [Streptococcus agalactiae A909] Length = 530 Score = 37.2 bits (84), Expect = 4.1, Method: Composition-based stats. Identities = 39/316 (12%), Positives = 79/316 (25%), Gaps = 53/316 (16%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ + + + + N T + I + GK+ L A + L+L+ Sbjct: 48 PWQEQIVRDLFGIVKEDGNRQFLTAY---IEIPKKNGKSELAAAIALYLLYADNEA---- 100 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 A + A + F++ + S + + Sbjct: 101 SAEVYGAACDRNQASIV-----------FDVAKQMVLMSRPLEKRSKIMGATKRIVNYSN 149 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT-- 230 Y +T H + + DE P+ +L + + T Sbjct: 150 AGFYQVLSAETG-TKHGLNVSGLVFDEIHAQPNRHLYDVLTKGSGDAREQPLFFIITTAG 208 Query: 231 RRLNGWFYDIFNIP----------------------LEDW----KRYQIDTRTVEGIDSG 264 N Y++ +DW + + I Sbjct: 209 TDKNSICYELHTKALDILKGRKKDTSFYPVVYGLSDADDWNDEANWLKANPSLGHTIGID 268 Query: 265 FHEGIISRYGLDS---DVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLIM 320 + + +V + L + V +IP + + S + Sbjct: 269 RVREAYQQALDNPAEENVFKQLRLNMWTSSSV-AWIPEHVYAKGNSPIDYEALKGRDCYA 327 Query: 321 GCDIAGEGGDKTVVVF 336 G D++ D T V Sbjct: 328 GLDLSST-SDITAFVL 342 >gi|329112570|ref|NP_001179731.2| DNA2-like helicase [Bos taurus] Length = 1061 Score = 37.2 bits (84), Expect = 4.1, Method: Composition-based stats. Identities = 25/195 (12%), Positives = 57/195 (29%), Gaps = 16/195 (8%) Query: 13 QELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNN 72 Q+L ++++ F +++ P K ++ Q + M+ V Sbjct: 589 QKLRDLIIDFREP-QFISYLSSVLPHEAKDTVACILKGLNKPQRQAMKKV---------- 637 Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 + + G GKTT ++ L + G S++ + + + + N L + Sbjct: 638 LLSKDYTLIVGMP-GTGKTTTICTLVRILYAC--GFSVLLTSYTHSAVDNILLKLAKFKI 694 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQ--SMGIDSKHYTITCRTYSEERPDTFVGPHNT 190 L ++ + + S+ + + Y + Sbjct: 695 GFLRLGQIQKVHPDIQKFTEEEICRSKSIKSLALLEELYNSQLIVATTCMGINHPIFSRK 754 Query: 191 HGMAVFNDEASGTPD 205 DEAS Sbjct: 755 TFDFCIVDEASQISQ 769 >gi|322708209|gb|EFY99786.1| Putative DNA helicase ino-80 [Metarhizium anisopliae ARSEF 23] Length = 1927 Score = 37.2 bits (84), Expect = 4.1, Method: Composition-based stats. Identities = 23/188 (12%), Positives = 43/188 (22%), Gaps = 17/188 (9%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G+GKT + +M +L + + L N E++K++ ++ Sbjct: 1098 GLGKTVQSISVMAYLAEKHDIWGPFLVVAPASTLHN-WQQEIAKFVPEFKILPYWGSAPD 1156 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + + C T + + DEA Sbjct: 1157 RKVLRKF---WDRKHSTYRKDAAFHVCVTSYQLVVSDVAYFQKMRWQYMILDEAQAIKSS 1213 Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW---KRYQIDTRTVEGIDS 263 S + ++T I N E W S Sbjct: 1214 Q-SSRWKSLLGFHCRNRLLLTGTP---------IQNNMQELWALLHFIMPSLFDSHDEFS 1263 Query: 264 GFHEGIIS 271 + I Sbjct: 1264 EWFSKDIE 1271 >gi|297491472|ref|XP_002698948.1| PREDICTED: DNA replication helicase 2 homolog (yeast) [Bos taurus] gi|296472072|gb|DAA14187.1| DNA replication helicase 2 homolog [Bos taurus] Length = 1137 Score = 37.2 bits (84), Expect = 4.1, Method: Composition-based stats. Identities = 25/195 (12%), Positives = 57/195 (29%), Gaps = 16/195 (8%) Query: 13 QELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNN 72 Q+L ++++ F +++ P K ++ Q + M+ V Sbjct: 665 QKLRDLIIDFREP-QFISYLSSVLPHEAKDTVACILKGLNKPQRQAMKKV---------- 713 Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWL 132 + + G GKTT ++ L + G S++ + + + + N L + Sbjct: 714 LLSKDYTLIVGMP-GTGKTTTICTLVRILYAC--GFSVLLTSYTHSAVDNILLKLAKFKI 770 Query: 133 SMLPHRHWFEMQSLSLHPSGWYAELLEQ--SMGIDSKHYTITCRTYSEERPDTFVGPHNT 190 L ++ + + S+ + + Y + Sbjct: 771 GFLRLGQIQKVHPDIQKFTEEEICRSKSIKSLALLEELYNSQLIVATTCMGINHPIFSRK 830 Query: 191 HGMAVFNDEASGTPD 205 DEAS Sbjct: 831 TFDFCIVDEASQISQ 845 >gi|282599667|ref|ZP_05971423.2| terminase, ATPase subunit [Providencia rustigianii DSM 4541] gi|282568162|gb|EFB73697.1| terminase, ATPase subunit [Providencia rustigianii DSM 4541] Length = 574 Score = 37.2 bits (84), Expect = 4.1, Method: Composition-based stats. Identities = 35/303 (11%), Positives = 67/303 (22%), Gaps = 22/303 (7%) Query: 44 PLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS 103 P HF+ QL+ + + + + I R IG T A L Sbjct: 107 PKNHFTPEQIEQLKTLVLGTLFEYQRQWWDERSQRNRFILKSRQIGATWYFAREALLTAL 166 Query: 104 TRPGMSIICIANSET--QLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS 161 I A+ Q K + + L + + ++ A QS Sbjct: 167 ETGNNQIFLSASRAQAFQFKRFIQLLARQVGVELKGGDEIMLSNGAILFFLGTAAATAQS 226 Query: 162 MGID---SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTEL 218 D + + ++ + S + G F Sbjct: 227 YTGDLYFDEVFWVSRFLELRKVASAMATQSGLRRTY--FSTPSSEDHEAYEFWTGDFYNK 284 Query: 219 NPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSD 278 + W++ + + I D Sbjct: 285 GKPEKERKII--ELSHKVLKFGHYSGDSMWRQIVNIHDAIARGLNRVILEEIKDEN-PPD 341 Query: 279 VARIEILGQFPQQEV-----NNFI--PHNYIEEAMSREAIDDL-----YAPLIMGCDIAG 326 R +F + + I + + + P+ +G D G Sbjct: 342 DFRNLYECEFVKTGERAFSYDALINCGVDGYNSHIWSDWKPYAPRPLGNRPVWVGADPTG 401 Query: 327 EGG 329 G Sbjct: 402 TGD 404 >gi|332829931|gb|EGK02559.1| hypothetical protein HMPREF9455_00809 [Dysgonomonas gadei ATCC BAA-286] Length = 662 Score = 37.2 bits (84), Expect = 4.2, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 1/74 (1%) Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 ++ + +N N + G G GKT ++ ++ P I+CI ++ Sbjct: 5 ALDKIREIIDNNQNPKK-EFKNFVLQGGAGSGKTESLKEVISYIAEKYPKKKIVCITHTN 63 Query: 118 TQLKNTLWAEVSKW 131 + + +K+ Sbjct: 64 VAVDEIIARVGNKY 77 >gi|322700261|gb|EFY92017.1| Putative DNA helicase ino-80 [Metarhizium acridum CQMa 102] Length = 1925 Score = 37.2 bits (84), Expect = 4.2, Method: Composition-based stats. Identities = 23/188 (12%), Positives = 43/188 (22%), Gaps = 17/188 (9%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G+GKT + +M +L + + L N E++K++ ++ Sbjct: 1095 GLGKTVQSISVMAYLAEKHDIWGPFLVVAPASTLHN-WQQEIAKFVPEFKILPYWGSAPD 1153 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + + C T + + DEA Sbjct: 1154 RKVLRKF---WDRKHSTYRKDAAFHVCVTSYQLVVSDVAYFQKMRWQYMILDEAQAIKSS 1210 Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDW---KRYQIDTRTVEGIDS 263 S + ++T I N E W S Sbjct: 1211 Q-SSRWKSLLGFHCRNRLLLTGTP---------IQNNMQELWALLHFIMPSLFDSHDEFS 1260 Query: 264 GFHEGIIS 271 + I Sbjct: 1261 EWFSKDIE 1268 >gi|296166195|ref|ZP_06848636.1| type III restriction enzyme [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898443|gb|EFG78008.1| type III restriction enzyme [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 705 Score = 37.2 bits (84), Expect = 4.2, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 34/161 (21%), Gaps = 18/161 (11%) Query: 67 HSNVNNSNPTIFKCAISA-----GRG-------IGKT--TLNAWMMLWLISTRPGMSIIC 112 K AI A GRG GKT L A LW + ++ Sbjct: 249 RRPPTLKLRDYQKDAIRAWWKENGRGIWEMATGTGKTVTALAAVEALWGVQQNKDSLLVV 308 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 + L AE S A + S I Sbjct: 309 VTVPYKHLAEQWAAEA----RKFGANPILAYDDASRWIPQMEAAVAALSPTNRKLILVIA 364 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILG 213 + + DEA ++ L Sbjct: 365 VNRTFCGSKFIDRLRAASCTKMLICDEAHTAGSKEMRAALP 405 >gi|90962260|ref|YP_536176.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118] gi|90821454|gb|ABE00093.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118] Length = 426 Score = 37.2 bits (84), Expect = 4.2, Method: Composition-based stats. Identities = 29/242 (11%), Positives = 56/242 (23%), Gaps = 30/242 (12%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 E F++P Q + A G GKT + +L I + Sbjct: 12 EGFTEPTLIQKYVYPKLAEG------------KNVVGLAPTGSGKTLAYSLPLLEKILPK 59 Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 G ++ +A S+ R W ++ LS+ A + Q + Sbjct: 60 DGSQLLIMAPSQELAAQLT----------NTIRPWAKLLDLSVIGLLGGANVKRQIEKLK 109 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRF 223 + ++ DEA + + + Sbjct: 110 KHPEVVIGTPGRLLNLINLKKLKLHKIESIVIDEADEMLGDEDSLNDVREIVSHCPSEAQ 169 Query: 224 WIMTSNTRRLN-GWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARI 282 S T + F + +E + D +I Sbjct: 170 ISFFSATEAPILSELHRWFGVDVEKIDVRKED-----NTRGEVTNYMIEAPTRKRTEMLR 224 Query: 283 EI 284 + Sbjct: 225 RL 226 >gi|226951859|ref|ZP_03822323.1| exonuclease V alpha subunit [Acinetobacter sp. ATCC 27244] gi|226837399|gb|EEH69782.1| exonuclease V alpha subunit [Acinetobacter sp. ATCC 27244] Length = 601 Score = 37.2 bits (84), Expect = 4.3, Method: Composition-based stats. Identities = 22/173 (12%), Positives = 44/173 (25%), Gaps = 23/173 (13%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKC-------AISAGRGIGKTTLNAWMMLWLISTRPG 107 Q+ + + + + K I+ G G GKT A ++ L P Sbjct: 130 QMTPVIDISEYESLLEDEFQQAALKMVLQQWVSIITGGPGTGKTYTLARIIAALNQMIPD 189 Query: 108 MSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSK 167 + I A + + +Q+ P + L+ + S Sbjct: 190 IRIAMAAPTGKAAQRM----------------QEALQNSFNDPKLIASGLVTDELRNQST 233 Query: 168 HYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220 + F + DEAS + ++ + Sbjct: 234 QTLHRLLGMGNRQIPRFNVKQPLPYDVIVVDEASMLDLNLATALFEAVPDSCR 286 >gi|205353381|ref|YP_002227182.1| multidrug transporter membrane component/ATP-binding protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857683|ref|YP_002244334.1| multidrug transporter membrane protein/ATP-binding protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|205273162|emb|CAR38123.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206709486|emb|CAR33830.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326628472|gb|EGE34815.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 547 Score = 37.2 bits (84), Expect = 4.3, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 22/200 (11%) Query: 47 HFSQPH---RWQLEFMEAVDVHCHSNVNNSNPTIFKC------AISAGRGIGKTTLNAWM 97 F QP W+ + V H N + P + G G GK+TL M Sbjct: 310 DFPQPKAFPDWKTLELRNVVFHYQDNAFSVGPINLTIHRGELLFLIGGNGSGKSTLA--M 367 Query: 98 MLWLISTRPGMSII----CIANSETQLKNTLWAEV--SKWLSMLPHRHWFEMQSLSLHPS 151 +L + +I+ IA + + L++ V WL + + +L Sbjct: 368 LLTGLYQPQSGTILLDGQPIAAGQPEDYRKLFSAVFTDVWLFDRLLGPQGKPANPALVEK 427 Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--- 208 + + ++ + +++ + + DE + D Sbjct: 428 WLEHLKMTHKLELNDGRILNLKLSKGQKKRIALLLALAEERDIILLDEWAADQDPHFRRE 487 Query: 209 --KSILGFFTELNPNRFWIM 226 + +L E+ F I Sbjct: 488 FYQVLLPLMQEMGKTIFAIS 507 >gi|168818011|ref|ZP_02830011.1| ABC transporter ATP-binding protein YojI [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205344883|gb|EDZ31647.1| ABC transporter ATP-binding protein YojI [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320086700|emb|CBY96471.1| Lipid A export ATP-binding/permease protein msbA [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 547 Score = 37.2 bits (84), Expect = 4.3, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 22/200 (11%) Query: 47 HFSQPH---RWQLEFMEAVDVHCHSNVNNSNPTIFKC------AISAGRGIGKTTLNAWM 97 F QP W+ + V H N + P + G G GK+TL M Sbjct: 310 DFPQPKAFPDWKTLELRNVVFHYQDNAFSVGPINLTIHRGELLFLIGGNGSGKSTLA--M 367 Query: 98 MLWLISTRPGMSII----CIANSETQLKNTLWAEV--SKWLSMLPHRHWFEMQSLSLHPS 151 +L + +I+ IA + + L++ V WL + + +L Sbjct: 368 LLTGLYQPQSGTILLDGQPIAAGQPEDYRKLFSAVFTDVWLFDRLLGPQGKPANPALVEK 427 Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--- 208 + + ++ + +++ + + DE + D Sbjct: 428 WLEHLKMTHKLELNDGRILNLKLSKGQKKRIALLLALAEERDIILLDEWAADQDPHFRRE 487 Query: 209 --KSILGFFTELNPNRFWIM 226 + +L E+ F I Sbjct: 488 FYQVLLPLMQEMGKTIFAIS 507 >gi|168261726|ref|ZP_02683699.1| ABC transporter ATP-binding protein YojI [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205349663|gb|EDZ36294.1| ABC transporter ATP-binding protein YojI [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 547 Score = 37.2 bits (84), Expect = 4.3, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 22/200 (11%) Query: 47 HFSQPH---RWQLEFMEAVDVHCHSNVNNSNPTIFKC------AISAGRGIGKTTLNAWM 97 F QP W+ + V H N + P + G G GK+TL M Sbjct: 310 DFPQPKAFPDWKTLELRNVVFHYQDNAFSVGPINLTIHRGELLFLIGGNGSGKSTLA--M 367 Query: 98 MLWLISTRPGMSII----CIANSETQLKNTLWAEV--SKWLSMLPHRHWFEMQSLSLHPS 151 +L + +I+ IA + + L++ V WL + + +L Sbjct: 368 LLTGLYQPQSGTILLDGQPIAAGQPEDYRKLFSAVFTDVWLFDRLLGPQGKPANPALVEK 427 Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--- 208 + + ++ + +++ + + DE + D Sbjct: 428 WLEHLKMTHKLELNDGRILNLKLSKGQKKRIALLLALAEERDIILLDEWAADQDPHFRRE 487 Query: 209 --KSILGFFTELNPNRFWIM 226 + +L E+ F I Sbjct: 488 FYQVLLPLMQEMGKTIFAIS 507 >gi|194445903|ref|YP_002041525.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404566|gb|ACF64788.1| ABC transporter ATP-binding protein YojI [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 547 Score = 37.2 bits (84), Expect = 4.3, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 22/200 (11%) Query: 47 HFSQPH---RWQLEFMEAVDVHCHSNVNNSNPTIFKC------AISAGRGIGKTTLNAWM 97 F QP W+ + V H N + P + G G GK+TL M Sbjct: 310 DFPQPKAFPDWKTLELRNVVFHYQDNAFSVGPINLTIHRGELLFLIGGNGSGKSTLA--M 367 Query: 98 MLWLISTRPGMSII----CIANSETQLKNTLWAEV--SKWLSMLPHRHWFEMQSLSLHPS 151 +L + +I+ IA + + L++ V WL + + +L Sbjct: 368 LLTGLYQPQSGTILLDGQPIAAGQPEDYRKLFSAVFTDVWLFDRLLGPQGKPANPALVEK 427 Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--- 208 + + ++ + +++ + + DE + D Sbjct: 428 WLEHLKMTHKLELNDGRILNLKLSKGQKKRIALLLALAEERDIILLDEWAADQDPHFRRE 487 Query: 209 --KSILGFFTELNPNRFWIM 226 + +L E+ F I Sbjct: 488 FYQVLLPLMQEMGKTIFAIS 507 >gi|168242376|ref|ZP_02667308.1| ABC transporter ATP-binding protein YojI [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194447919|ref|YP_002046318.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194406223|gb|ACF66442.1| ABC transporter ATP-binding protein YojI [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205338321|gb|EDZ25085.1| ABC transporter ATP-binding protein YojI [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 547 Score = 37.2 bits (84), Expect = 4.3, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 22/200 (11%) Query: 47 HFSQPH---RWQLEFMEAVDVHCHSNVNNSNPTIFKC------AISAGRGIGKTTLNAWM 97 F QP W+ + V H N + P + G G GK+TL M Sbjct: 310 DFPQPKAFPDWKTLELRNVVFHYQDNAFSVGPINLTIHRGELLFLIGGNGSGKSTLA--M 367 Query: 98 MLWLISTRPGMSII----CIANSETQLKNTLWAEV--SKWLSMLPHRHWFEMQSLSLHPS 151 +L + +I+ IA + + L++ V WL + + +L Sbjct: 368 LLTGLYQPQSGTILLDGQPIAAGQPEDYRKLFSAVFTDVWLFDRLLGPQGKPANPALVEK 427 Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--- 208 + + ++ + +++ + + DE + D Sbjct: 428 WLEHLKMTHKLELNDGRILNLKLSKGQKKRIALLLALAEERDIILLDEWAADQDPHFRRE 487 Query: 209 --KSILGFFTELNPNRFWIM 226 + +L E+ F I Sbjct: 488 FYQVLLPLMQEMGKTIFAIS 507 >gi|204929126|ref|ZP_03220269.1| ABC transporter ATP-binding protein YojI [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321670|gb|EDZ06869.1| ABC transporter ATP-binding protein YojI [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322617016|gb|EFY13922.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617678|gb|EFY14577.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624692|gb|EFY21521.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630241|gb|EFY27011.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634422|gb|EFY31155.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639132|gb|EFY35824.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640129|gb|EFY36795.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645783|gb|EFY42307.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651558|gb|EFY47933.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656119|gb|EFY52418.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659471|gb|EFY55718.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665933|gb|EFY62116.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669829|gb|EFY65970.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673814|gb|EFY69911.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678572|gb|EFY74628.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683632|gb|EFY79646.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687708|gb|EFY83678.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323196195|gb|EFZ81352.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198363|gb|EFZ83465.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204199|gb|EFZ89210.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208585|gb|EFZ93524.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212352|gb|EFZ97175.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218242|gb|EGA02952.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223000|gb|EGA07349.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227435|gb|EGA11600.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232237|gb|EGA16340.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235730|gb|EGA19814.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241110|gb|EGA25146.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244852|gb|EGA28854.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248563|gb|EGA32494.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251583|gb|EGA35451.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255015|gb|EGA38805.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263090|gb|EGA46636.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268150|gb|EGA51627.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270757|gb|EGA54195.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 547 Score = 37.2 bits (84), Expect = 4.3, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 22/200 (11%) Query: 47 HFSQPH---RWQLEFMEAVDVHCHSNVNNSNPTIFKC------AISAGRGIGKTTLNAWM 97 F QP W+ + V H N + P + G G GK+TL M Sbjct: 310 DFPQPKAFPDWKTLELRNVVFHYQDNAFSVGPINLTIHRGELLFLIGGNGSGKSTLA--M 367 Query: 98 MLWLISTRPGMSII----CIANSETQLKNTLWAEV--SKWLSMLPHRHWFEMQSLSLHPS 151 +L + +I+ IA + + L++ V WL + + +L Sbjct: 368 LLTGLYQPQSGTILLDGQPIAAGQPEDYRKLFSAVFTDVWLFDRLLGPQGKPANPALVEK 427 Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--- 208 + + ++ + +++ + + DE + D Sbjct: 428 WLEHLKMTHKLELNDGRILNLKLSKGQKKRIALLLALAEERDIILLDEWAADQDPHFRRE 487 Query: 209 --KSILGFFTELNPNRFWIM 226 + +L E+ F I Sbjct: 488 FYQVLLPLMQEMGKTIFAIS 507 >gi|168229624|ref|ZP_02654682.1| ABC transporter ATP-binding protein YojI [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168236438|ref|ZP_02661496.1| ABC transporter ATP-binding protein YojI [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194472352|ref|ZP_03078336.1| ABC transporter ATP-binding protein YojI [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736104|ref|YP_002115336.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197264984|ref|ZP_03165058.1| ABC transporter ATP-binding protein YojI [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|238913915|ref|ZP_04657752.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|194458716|gb|EDX47555.1| ABC transporter ATP-binding protein YojI [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711606|gb|ACF90827.1| ABC transporter ATP-binding protein YojI [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197243239|gb|EDY25859.1| ABC transporter ATP-binding protein YojI [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197290460|gb|EDY29815.1| ABC transporter ATP-binding protein YojI [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|205335739|gb|EDZ22503.1| ABC transporter ATP-binding protein YojI [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 547 Score = 37.2 bits (84), Expect = 4.3, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 22/200 (11%) Query: 47 HFSQPH---RWQLEFMEAVDVHCHSNVNNSNPTIFKC------AISAGRGIGKTTLNAWM 97 F QP W+ + V H N + P + G G GK+TL M Sbjct: 310 DFPQPKAFPDWKTLELRNVVFHYQDNAFSVGPINLTIHRGELLFLIGGNGSGKSTLA--M 367 Query: 98 MLWLISTRPGMSII----CIANSETQLKNTLWAEV--SKWLSMLPHRHWFEMQSLSLHPS 151 +L + +I+ IA + + L++ V WL + + +L Sbjct: 368 LLTGLYQPQSGTILLDGQPIAAGQPEDYRKLFSAVFTDVWLFDRLLGPQGKPANPALVEK 427 Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--- 208 + + ++ + +++ + + DE + D Sbjct: 428 WLEHLKMTHKLELNDGRILNLKLSKGQKKRIALLLALAEERDIILLDEWAADQDPHFRRE 487 Query: 209 --KSILGFFTELNPNRFWIM 226 + +L E+ F I Sbjct: 488 FYQVLLPLMQEMGKTIFAIS 507 >gi|161613020|ref|YP_001586985.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167549746|ref|ZP_02343505.1| ABC transporter ATP-binding protein YojI [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168466043|ref|ZP_02699913.1| ABC transporter ATP-binding protein YojI [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197251544|ref|YP_002147220.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|198243297|ref|YP_002216333.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|161362384|gb|ABX66152.1| hypothetical protein SPAB_00727 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|195631497|gb|EDX50057.1| ABC transporter ATP-binding protein YojI [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197215247|gb|ACH52644.1| ABC transporter ATP-binding protein YojI [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197937813|gb|ACH75146.1| ABC transporter ATP-binding protein YojI [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205325207|gb|EDZ13046.1| ABC transporter ATP-binding protein YojI [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|326624083|gb|EGE30428.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 547 Score = 37.2 bits (84), Expect = 4.3, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 22/200 (11%) Query: 47 HFSQPH---RWQLEFMEAVDVHCHSNVNNSNPTIFKC------AISAGRGIGKTTLNAWM 97 F QP W+ + V H N + P + G G GK+TL M Sbjct: 310 DFPQPKAFPDWKTLELRNVVFHYQDNAFSVGPINLTIHRGELLFLIGGNGSGKSTLA--M 367 Query: 98 MLWLISTRPGMSII----CIANSETQLKNTLWAEV--SKWLSMLPHRHWFEMQSLSLHPS 151 +L + +I+ IA + + L++ V WL + + +L Sbjct: 368 LLTGLYQPQSGTILLDGQPIAAGQPEDYRKLFSAVFTDVWLFDRLLGPQGKPANPALVEK 427 Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--- 208 + + ++ + +++ + + DE + D Sbjct: 428 WLEHLKMTHKLELNDGRILNLKLSKGQKKRIALLLALAEERDIILLDEWAADQDPHFRRE 487 Query: 209 --KSILGFFTELNPNRFWIM 226 + +L E+ F I Sbjct: 488 FYQVLLPLMQEMGKTIFAIS 507 >gi|62180837|ref|YP_217254.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224583250|ref|YP_002637048.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62128470|gb|AAX66173.1| putative ABC-type multidrug/protein/lipid transport system, ATPase component [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224467777|gb|ACN45607.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322715313|gb|EFZ06884.1| ABC transporter ATP-binding protein YojI [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 547 Score = 37.2 bits (84), Expect = 4.3, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 22/200 (11%) Query: 47 HFSQPH---RWQLEFMEAVDVHCHSNVNNSNPTIFKC------AISAGRGIGKTTLNAWM 97 F QP W+ + V H N + P + G G GK+TL M Sbjct: 310 DFPQPKAFPDWKTLELRNVVFHYQDNAFSVGPINLTIHRGELLFLIGGNGSGKSTLA--M 367 Query: 98 MLWLISTRPGMSII----CIANSETQLKNTLWAEV--SKWLSMLPHRHWFEMQSLSLHPS 151 +L + +I+ IA + + L++ V WL + + +L Sbjct: 368 LLTGLYQPQSGTILLDGQPIAAGQPEDYRKLFSAVFTDVWLFDRLLGPQGKPANPALVEK 427 Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--- 208 + + ++ + +++ + + DE + D Sbjct: 428 WLEHLKMTHKLELNDGRILNLKLSKGQKKRIALLLALAEERDIILLDEWAADQDPHFRRE 487 Query: 209 --KSILGFFTELNPNRFWIM 226 + +L E+ F I Sbjct: 488 FYQVLLPLMQEMGKTIFAIS 507 >gi|56412839|ref|YP_149914.1| multidrug transporter membrane protein/ATP-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361772|ref|YP_002141408.1| multidrug transporter membrane protein/ATP-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127096|gb|AAV76602.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093248|emb|CAR58693.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 547 Score = 37.2 bits (84), Expect = 4.3, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 22/200 (11%) Query: 47 HFSQPH---RWQLEFMEAVDVHCHSNVNNSNPTIFKC------AISAGRGIGKTTLNAWM 97 F QP W+ + V H N + P + G G GK+TL M Sbjct: 310 DFPQPKAFPDWKTLELRNVVFHYQDNAFSVGPINLTIHRGELLFLIGGNGSGKSTLA--M 367 Query: 98 MLWLISTRPGMSII----CIANSETQLKNTLWAEV--SKWLSMLPHRHWFEMQSLSLHPS 151 +L + +I+ IA + + L++ V WL + + +L Sbjct: 368 LLTGLYQPQSGTILLDGQPIAAGQPEDYRKLFSAVFTDVWLFDRLLGPQGKPANPALVEK 427 Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--- 208 + + ++ + +++ + + DE + D Sbjct: 428 WLEHLKMTHKLELNDGRILNLKLSKGQKKRIALLLALAEERDIILLDEWAADQDPHFRRE 487 Query: 209 --KSILGFFTELNPNRFWIM 226 + +L E+ F I Sbjct: 488 FYQVLLPLMQEMGKTIFAIS 507 >gi|16765591|ref|NP_461206.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167992594|ref|ZP_02573691.1| ABC transporter ATP-binding protein YojI [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|200386629|ref|ZP_03213241.1| ABC transporter ATP-binding protein YojI [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|16420802|gb|AAL21165.1| putative ABC-type multidrug/protein/lipid transport system [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|199603727|gb|EDZ02272.1| ABC transporter ATP-binding protein YojI [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205329224|gb|EDZ15988.1| ABC transporter ATP-binding protein YojI [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261247472|emb|CBG25299.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994349|gb|ACY89234.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158822|emb|CBW18335.1| putative ABC transporter ATP-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913254|dbj|BAJ37228.1| multidrug ABC transporter permease/ATP-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223037|gb|EFX48108.1| Putative ATP-binding component of a transport system [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130594|gb|ADX18024.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332989197|gb|AEF08180.1| multidrug transporter membrane component/ATP-binding component [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 547 Score = 37.2 bits (84), Expect = 4.3, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 22/200 (11%) Query: 47 HFSQPH---RWQLEFMEAVDVHCHSNVNNSNPTIFKC------AISAGRGIGKTTLNAWM 97 F QP W+ + V H N + P + G G GK+TL M Sbjct: 310 DFPQPKAFPDWKTLELRNVVFHYQDNAFSVGPINLTIHRGELLFLIGGNGSGKSTLA--M 367 Query: 98 MLWLISTRPGMSII----CIANSETQLKNTLWAEV--SKWLSMLPHRHWFEMQSLSLHPS 151 +L + +I+ IA + + L++ V WL + + +L Sbjct: 368 LLTGLYQPQSGTILLDGQPIAAGQPEDYRKLFSAVFTDVWLFDRLLGPQGKPANPALVEK 427 Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIIN--- 208 + + ++ + +++ + + DE + D Sbjct: 428 WLEHLKMTHKLELNDGRILNLKLSKGQKKRIALLLALAEERDIILLDEWAADQDPHFRRE 487 Query: 209 --KSILGFFTELNPNRFWIM 226 + +L E+ F I Sbjct: 488 FYQVLLPLMQEMGKTIFAIS 507 >gi|255537537|ref|XP_002509835.1| rad25/xp-B DNA repair helicase, putative [Ricinus communis] gi|223549734|gb|EEF51222.1| rad25/xp-B DNA repair helicase, putative [Ricinus communis] Length = 768 Score = 37.2 bits (84), Expect = 4.3, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 22/187 (11%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 L+ +QP +Q + + + + + + G GK+ ++ Sbjct: 270 LDMELKPHAQPRPYQEKSLSKMFGNGRARSG--------IIVLPC-GAGKS-----LVGV 315 Query: 101 LISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 + R S +C+A + + WA + S + S S A ++ Sbjct: 316 SAACRIKKSCLCLATNAVSVDQ--WAFQFQLWSTIREEQICRFTSDSKERFQGNAGVVVT 373 Query: 161 SMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNP 220 + SEE N + DE P + + ++ T+ + Sbjct: 374 TYN-----MVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVI-SLTKSHC 427 Query: 221 NRFWIMT 227 T Sbjct: 428 KLGLTAT 434 >gi|156033071|ref|XP_001585372.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980] gi|154699014|gb|EDN98752.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980 UF-70] Length = 814 Score = 37.2 bits (84), Expect = 4.4, Method: Composition-based stats. Identities = 28/237 (11%), Positives = 63/237 (26%), Gaps = 28/237 (11%) Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSM 134 P+ AI G GK+T+ + L+ + I + + + + + M Sbjct: 533 PSGTNVAIVGPSGGGKSTIGS-----LLLRFYNPTEGKITINGQDITKMNAKSLRRRIGM 587 Query: 135 LPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN----- 189 + S++ + + + ++ + E DT VG Sbjct: 588 VGQEPVLMSGSVAENIAYGKPHASRSEIIAAARKANCQFISDFPEGLDTQVGARGAQLSG 647 Query: 190 -------------THGMAVFNDEASGTPDIINK-----SILGFFTELNPNRFWIMTSNTR 231 + + DEA+ D ++ ++ N +T Sbjct: 648 GQKQRIAIARALLKNPDILILDEATSALDAESETLVNSALAALLRGQNTTISIAHRLSTI 707 Query: 232 RLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQF 288 + + + N + G +D +E+ G F Sbjct: 708 KRSDHVIVLGNDGKVAETGTYNSLSSNPNSAFSKLMEWQMSGGDAADHRPVELEGHF 764 >gi|310799549|gb|EFQ34442.1| UvrD/REP helicase [Glomerella graminicola M1.001] Length = 988 Score = 37.2 bits (84), Expect = 4.4, Method: Composition-based stats. Identities = 21/218 (9%), Positives = 54/218 (24%), Gaps = 23/218 (10%) Query: 80 CAISAGRGIGKTTLNAWMMLWLIST--RPGMSIICIANSETQLKNTLWAEVSKWLSMLPH 137 AI AG G GKT A ++WL+ I+ + + Sbjct: 33 VAILAGPGSGKTHTLASRVVWLLDNVGYAPADIVVATFTVKSAREM---------KERIT 83 Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFN 197 + + + + +++ + +++ + + + Sbjct: 84 KALGDDRGKKIVLGTFHSIARRYLAAYGKRIGLDEKFAIADDADSRSIIQRICKRLQLSV 143 Query: 198 DEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRT 257 D P + I ++ + ++ NG ++ YQI Sbjct: 144 D-----PPVARSWISKKKSKGDNQ-------TPQKRNGQAVPQSRDLETCFREYQIHLEH 191 Query: 258 VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNN 295 + +D + + + Sbjct: 192 SKLLDYDDLLTRCVELLRKHPSCVANVQAVLIDEYQDT 229 >gi|116200720|ref|XP_001226172.1| hypothetical protein CHGG_10905 [Chaetomium globosum CBS 148.51] gi|88175619|gb|EAQ83087.1| hypothetical protein CHGG_10905 [Chaetomium globosum CBS 148.51] Length = 420 Score = 37.2 bits (84), Expect = 4.4, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 8/98 (8%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + E + H + N P + I G G GK+ + + RP + A Sbjct: 13 QRQVYETIMRHFKAKNENRRPPPLRLQIDGGGGTGKSYMV-------VYGRPSPIVRA-A 64 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSG 152 + + L + + + + Sbjct: 65 PTGVASNQIGGQTLHSLLRLPVDGDYRSLSETPTTLNA 102 >gi|119775874|ref|YP_928614.1| ATP-dependent RNA helicase SrmB [Shewanella amazonensis SB2B] gi|119768374|gb|ABM00945.1| superfamily II DNA and RNA helicase-like protein [Shewanella amazonensis SB2B] Length = 613 Score = 37.2 bits (84), Expect = 4.4, Method: Composition-based stats. Identities = 20/225 (8%), Positives = 38/225 (16%), Gaps = 18/225 (8%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGM-----SIICIAN 115 A G GKT L + P ++ + Sbjct: 22 NTPTTIQRMTIPLAMEQRDILARAPTGTGKTASFLLPALQHLIDFPRRRPGQPRVLVLTP 81 Query: 116 SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 + + ++ H L + Q + S + Sbjct: 82 TRELASQ-----IHRY-----ASHLATNLELDIKLITGGVPYGPQEEMLKSNVDILVATP 131 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 + DEA D+ ++ R M + G Sbjct: 132 GRLLEYLDKGHFSAELVEVLVIDEADRMLDMGFGEVVKTIAVEASGRKQAMLFSATLEGG 191 Query: 236 WFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVA 280 + E + I Sbjct: 192 GVG---SFARELLNEPMFVESEPPRSEKAKIHQWIHLADDKDHKF 233 >gi|255711490|ref|XP_002552028.1| KLTH0B05522p [Lachancea thermotolerans] gi|238933406|emb|CAR21590.1| KLTH0B05522p [Lachancea thermotolerans] Length = 1055 Score = 37.2 bits (84), Expect = 4.5, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 43/125 (34%), Gaps = 10/125 (8%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 A++AGRG GK+ + +S +I + S LK L+ + K L ++ Sbjct: 279 VALTAGRGRGKSAALGIAIAAAVSHGY-SNIFVTSPSPENLKT-LFEFIFKGFDALGYQE 336 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + ++ + + +T P+ V DE Sbjct: 337 HMDYDIIQSTNPSFNKAIVRVDIKKSHR------QTIQYIVPNDSHVLG--QAELVVIDE 388 Query: 200 ASGTP 204 A+ P Sbjct: 389 AAAIP 393 >gi|319781686|ref|YP_004141162.1| ATPase, FliI/YscN family [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167574|gb|ADV11112.1| ATPase, FliI/YscN family [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 467 Score = 37.2 bits (84), Expect = 4.5, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 53/215 (24%), Gaps = 13/215 (6%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 + I AG G+GK+TL A + + + I +++ L + ++ Sbjct: 183 RLGIFAGSGVGKSTLLAMLA--GADAFDTVVVALIGERGREVREFLEDTIGDSMAKTIAV 240 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSK--------HYTITCRTYSEERPDTFVGPHNT 190 +S + + D T E T P Sbjct: 241 VATSDESAMMRRRAPDTAMRVAEHFRDQGHRVLLVLDSITRFAHALREVATGTGEPPVAR 300 Query: 191 HGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKR 250 A E P ++ ++ G + + + + N D L+ Sbjct: 301 GYPASVFTE---LPKLLERAGPGTEGKGSITAIISVLVDGDDHNDPVADSVRGILDGHVV 357 Query: 251 YQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEIL 285 ISR + L Sbjct: 358 LDRTIAEQGRYPPVNPLSSISRLAGKAWSVEQRAL 392 >gi|313902722|ref|ZP_07836120.1| CRISPR-associated helicase, Cas3 family [Thermaerobacter subterraneus DSM 13965] gi|313467019|gb|EFR62535.1| CRISPR-associated helicase, Cas3 family [Thermaerobacter subterraneus DSM 13965] Length = 727 Score = 37.2 bits (84), Expect = 4.6, Method: Composition-based stats. Identities = 19/157 (12%), Positives = 36/157 (22%), Gaps = 11/157 (7%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIAN- 115 V C + P +++ + G GKT L ++ Sbjct: 223 RIRREVYEACVRAASGP-PGVYRLTV--PTGGGKTRSGLAFALRHALIHDLRRVVVAIPY 279 Query: 116 ------SETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 + + L E + + A + + + Sbjct: 280 TSIIDQTARVYREILGDEAVLEHHSALQVPEEDERQDESVVRHRLATENWDAPIVVTTTV 339 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + +S RP H G + DE P Sbjct: 340 QMLESLFS-NRPSKVRKIHRLSGAVIVLDEVQALPPE 375 >gi|262374049|ref|ZP_06067326.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter junii SH205] gi|262311060|gb|EEY92147.1| exodeoxyribonuclease V, alpha subunit [Acinetobacter junii SH205] Length = 581 Score = 37.2 bits (84), Expect = 4.6, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 35/124 (28%), Gaps = 16/124 (12%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 I+ G G GKT A ++ L T P + I A + + Sbjct: 143 IITGGPGTGKTYTLARIIAALNQTIPDIRIAMAAPTGKAAQRM----------------Q 186 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 +Q+ P + L+ S+ S + F + DEA Sbjct: 187 EALQNSFKDPKLLESGLVTDSLRQQSTQTLHRLLGMGNRQVPRFNLKQPLPYDVIVVDEA 246 Query: 201 SGTP 204 S Sbjct: 247 SMLD 250 >gi|237735627|ref|ZP_04566108.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229381372|gb|EEO31463.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 644 Score = 36.8 bits (83), Expect = 4.7, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 50/193 (25%), Gaps = 24/193 (12%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q ++ D + K I A G GKTTL + R S + Sbjct: 13 RSYQQRVLDKYDRYSQD---------RKIHIVAAPGSGKTTLG-----IELIKRIDYSAL 58 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + S ++ + + + + P + S + Sbjct: 59 ILVPSI-TIREQWVERICEAFLVKQENRDQYLSQDLKKPKLITVVTYQALHSAMSHYCGE 117 Query: 172 TCRTYSEERPDTFVGPHNTHGM---------AVFNDEASGTPDIINKSILGFFTELNPNR 222 T E + V HN + + DE KS+ F N Sbjct: 118 LVETNDEFKTVEEVDYHNFDVISNFKECQLGTLCLDECHHLRSEWWKSLEEFKKAFNNIF 177 Query: 223 FWIMTSNTRRLNG 235 +T+ + Sbjct: 178 TVALTATPPYDSN 190 >gi|167757292|ref|ZP_02429419.1| hypothetical protein CLORAM_02842 [Clostridium ramosum DSM 1402] gi|167703467|gb|EDS18046.1| hypothetical protein CLORAM_02842 [Clostridium ramosum DSM 1402] Length = 890 Score = 36.8 bits (83), Expect = 4.7, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 50/193 (25%), Gaps = 24/193 (12%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSII 111 +Q ++ D + K I A G GKTTL + R S + Sbjct: 13 RSYQQRVLDKYDRYSQD---------RKIHIVAAPGSGKTTLG-----IELIKRIDYSAL 58 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 + S ++ + + + + P + S + Sbjct: 59 ILVPSI-TIREQWVERICEAFLVKQENRDQYLSQDLKKPKLITVVTYQALHSAMSHYCGE 117 Query: 172 TCRTYSEERPDTFVGPHNTHGM---------AVFNDEASGTPDIINKSILGFFTELNPNR 222 T E + V HN + + DE KS+ F N Sbjct: 118 LVETNDEFKTVEEVDYHNFDVISNFKECQLGTLCLDECHHLRSEWWKSLEEFKKAFNNIF 177 Query: 223 FWIMTSNTRRLNG 235 +T+ + Sbjct: 178 TVALTATPPYDSN 190 >gi|126010850|ref|YP_001039815.1| putative phage terminase large subunit [Vibrio phage VP882] gi|123203860|gb|ABM73380.1| putative phage terminase large subunit [Vibrio phage VP882] Length = 689 Score = 36.8 bits (83), Expect = 4.8, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 46/232 (19%), Gaps = 22/232 (9%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 NP + G +GK+ ++ W + P I+ +A + + T+ + Sbjct: 92 NPQYNRVTFVMGTQMGKSVSMENLVGWRLDDDPTP-IMYVAPTSNLIDTTVEPKFMDMFQ 150 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 S +S + + + Sbjct: 151 QA--------------ESLARKYDWNRSTKY---TKWVGGTKFRFAWAGSPTELAADSAG 193 Query: 194 AVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQI 253 V DE + T + P + Sbjct: 194 LVLVDEVDRIVNTGEGDTTEIIEARGDAYVDSKIGYTATPTHGKVERTEHPRTGLTHWAR 253 Query: 254 DTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQ-FPQQEVNNFIPHNYIEE 304 R S + GQ F + P EE Sbjct: 254 SHRDA---LSSAIWRLWQSGTRHEWAVPCPHCGQYFIPHSELLWWPGKGTEE 302 >gi|227892327|ref|ZP_04010132.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741] gi|227865876|gb|EEJ73297.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741] Length = 426 Score = 36.8 bits (83), Expect = 4.8, Method: Composition-based stats. Identities = 28/212 (13%), Positives = 53/212 (25%), Gaps = 25/212 (11%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 E F++P Q + A G GKT + +L I + Sbjct: 12 EGFTEPTLIQKYVYPKLAEG------------KNVVGLAPTGSGKTLAYSLPLLEKILPK 59 Query: 106 PGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGID 165 G ++ +A S+ R W ++ LS+ A + Q + Sbjct: 60 DGSQLLIMAPSQELAAQLT----------NTIRPWAKLLDLSVIGLLGGANVKRQIEKLK 109 Query: 166 SKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT--PDIINKSILGFFTELNPNRF 223 + ++ DEA + + + Sbjct: 110 KHPEVVIGTPGRLLNLINLKKLKLHKIESIVIDEADEMLGDEDSLNDVREIVSHCPSEAQ 169 Query: 224 WIMTSNTRRLN-GWFYDIFNIPLEDWKRYQID 254 S T + F + +E + D Sbjct: 170 ISFFSATEAPILSELHRWFGVDVEKIDVRKED 201 >gi|255935507|ref|XP_002558780.1| Pc13g03430 [Penicillium chrysogenum Wisconsin 54-1255] gi|211583400|emb|CAP91412.1| Pc13g03430 [Penicillium chrysogenum Wisconsin 54-1255] Length = 1035 Score = 36.8 bits (83), Expect = 4.8, Method: Composition-based stats. Identities = 20/150 (13%), Positives = 43/150 (28%), Gaps = 15/150 (10%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + + S ++AGRG GK+ + +I + Sbjct: 261 QAKALLTFVDAIAEKTLKST-----VTLTAGRGRGKSAALGVAIA-AAVAHGYSNIFITS 314 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 S LK L+ + K L + + L + ++ ++ + + + Sbjct: 315 PSPENLKT-LFEFIFKGFDALGYLDHVDYTILQSTNPDFNKAVVRVNIHRNHRQTIQYIQ 373 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + DEA+ P Sbjct: 374 PQDAQVLGQAE--------LLVIDEAAAIP 395 >gi|53749347|gb|AAU90206.1| putative polyprotein [Oryza sativa Japonica Group] Length = 1256 Score = 36.8 bits (83), Expect = 4.8, Method: Composition-based stats. Identities = 14/135 (10%), Positives = 35/135 (25%), Gaps = 2/135 (1%) Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQS-MGIDSKHYTITCRTYSEERPDTFVG 186 V W++ L + + + G + SK +T + ++ + Sbjct: 277 VEGWIASLDIEEKAQEKDAASKGDGGQSTANVVHKAQNKSKGKYKAQQTTNFKKKNNNNN 336 Query: 187 PHNTHGMAVFNDEASGTPDII-NKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL 245 + D+ + + + NT +G+ + F+ P Sbjct: 337 SNQDERTCFVCDQPDHLARKCPQRKRMKALAGQTSKSANVTIGNTGDGSGYGHTGFHRPN 396 Query: 246 EDWKRYQIDTRTVEG 260 +W Sbjct: 397 GEWVTCFCSWCWHGR 411 >gi|332524079|ref|ZP_08400331.1| putative phage terminase, large subunit [Streptococcus porcinus str. Jelinkova 176] gi|332315343|gb|EGJ28328.1| putative phage terminase, large subunit [Streptococcus porcinus str. Jelinkova 176] Length = 530 Score = 36.8 bits (83), Expect = 4.9, Method: Composition-based stats. Identities = 42/331 (12%), Positives = 82/331 (24%), Gaps = 59/331 (17%) Query: 38 WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWM 97 W K L WQ + + + + N T + I + GK+ L A + Sbjct: 39 WAGKKFELL------PWQEQIVRDLFGIVKEDGNRQFLTAY---IEIPKKNGKSELAAAI 89 Query: 98 MLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAEL 157 L+L+ A + A + F++ + S + Sbjct: 90 ALYLLYADNEA----SAEVYGAACDRNQASIV-----------FDVAKQMVLMSRPLEKR 134 Query: 158 LEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTE 217 + Y +T H + + DE P+ +L + Sbjct: 135 SKIMGATKRIVNYSNAGFYQVLSAETG-TKHGLNVSGLVFDEIHAQPNRHLYDVLTKGSG 193 Query: 218 LNPNRFWIMTSNT--RRLNGWFYDIFNIP----------------------LEDW----K 249 + T N Y++ +DW Sbjct: 194 DAREQPLFFIITTAGTDKNSICYELHTKALDILKGRKKDTSFYPVVYGLSDEDDWNDEAN 253 Query: 250 RYQIDTRTVEGIDSGFHEGIISRYGLDS---DVARIEILGQFPQQEVNNFIPHN-YIEEA 305 + + I + + +V + L + V +IP + Y + Sbjct: 254 WLKANPSLGHTIGIDRVREAYQQALDNPAEENVFKQLRLNMWTSSSV-AWIPEHVYAKGN 312 Query: 306 MSREAIDDLYAPLIMGCDIAGEGGDKTVVVF 336 + G D++ D T V Sbjct: 313 APIDYEALKGRDCYAGLDLSST-SDITAFVL 342 >gi|17533985|ref|NP_496515.1| yeast DNA helicase/endonuclease family member (dna-2) [Caenorhabditis elegans] gi|3877086|emb|CAA90399.1| C. elegans protein F43G6.1a, partially confirmed by transcript evidence [Caenorhabditis elegans] Length = 1105 Score = 36.8 bits (83), Expect = 4.9, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 36/122 (29%), Gaps = 8/122 (6%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW--FEMQ 144 G GKTTL + ++ ++ A + + + N L + + R ++ Sbjct: 711 GSGKTTLISVLI--QCLVATNKKVLLAAFTHSAVDNILTKLTKEVAAEKILRLGSSSSIK 768 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTY----SEERPDTFVGPHNTHGMAVFNDEA 200 + E S + + T + + H V DEA Sbjct: 769 DDIKKMTLKAKLENETSEEYYAAVRKVMKTTPIVACTCHHVPRELLFSYRHFDVVIVDEA 828 Query: 201 SG 202 S Sbjct: 829 SM 830 >gi|17533987|ref|NP_496516.1| yeast DNA helicase/endonuclease family member (dna-2) [Caenorhabditis elegans] gi|5824500|emb|CAB54253.1| C. elegans protein F43G6.1b, partially confirmed by transcript evidence [Caenorhabditis elegans] Length = 1069 Score = 36.8 bits (83), Expect = 4.9, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 36/122 (29%), Gaps = 8/122 (6%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW--FEMQ 144 G GKTTL + ++ ++ A + + + N L + + R ++ Sbjct: 675 GSGKTTLISVLI--QCLVATNKKVLLAAFTHSAVDNILTKLTKEVAAEKILRLGSSSSIK 732 Query: 145 SLSLHPSGWYAELLEQSMGIDSKHYTITCRTY----SEERPDTFVGPHNTHGMAVFNDEA 200 + E S + + T + + H V DEA Sbjct: 733 DDIKKMTLKAKLENETSEEYYAAVRKVMKTTPIVACTCHHVPRELLFSYRHFDVVIVDEA 792 Query: 201 SG 202 S Sbjct: 793 SM 794 >gi|262113737|emb|CAR95404.1| hypothetical protein [Streptococcus phage phi-m46.1] Length = 530 Score = 36.8 bits (83), Expect = 5.0, Method: Composition-based stats. Identities = 39/324 (12%), Positives = 79/324 (24%), Gaps = 53/324 (16%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ + + + + N T + I + GK+ L A + L+L+ Sbjct: 48 PWQEQIVRDLFGIVKEDGNRQFLTAY---IEIPKKNGKSELAAAIALYLLYADNEA---- 100 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 A + A + F++ + S + + Sbjct: 101 SAEVYGAACDRNQASIV-----------FDVAKQMVQMSRPLEKRSKIMGATKRIVNYSN 149 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT-- 230 Y +T H + + DE P+ +L + + T Sbjct: 150 AGFYQVLSAETG-TKHGLNVSGLVFDEIHAQPNRHLYDVLTKGSGDAREQPLFFIITTAG 208 Query: 231 RRLNGWFYDIFNIP----------------------LEDW----KRYQIDTRTVEGIDSG 264 N Y++ +DW + + I Sbjct: 209 TDRNSICYELHTKALDILNGRKKDTSFYPVVYGLSDEDDWNDEENWRRANPSLGHTIGID 268 Query: 265 FHEGIISRYGLDS---DVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLIM 320 + + +V + L + V +IP + + + Sbjct: 269 RVREAYQQALDNPAEENVFKQLRLNMWTSSSV-AWIPEHVYAKGNDPIQYESLKGRSCYA 327 Query: 321 GCDIAGEGGDKTVVVFRRGNIIEH 344 G D++ D T V E Sbjct: 328 GLDLSST-SDITAFVLVFPPRFEE 350 >gi|257413151|ref|ZP_05591542.1| phage terminase large subunit [Roseburia intestinalis L1-82] gi|257204482|gb|EEV02767.1| phage terminase large subunit [Roseburia intestinalis L1-82] Length = 408 Score = 36.8 bits (83), Expect = 5.0, Method: Composition-based stats. Identities = 24/200 (12%), Positives = 50/200 (25%), Gaps = 20/200 (10%) Query: 74 NPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLS 133 +P + K + A +GK+ + ++ ++I PG +I + + + L Sbjct: 67 DPKVNKLTVVAASQVGKSEVELNIIGYIIDQDPGSTI-YVQPTLDDARKFS------RLR 119 Query: 134 MLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGM 193 + P + + ++ +T Sbjct: 120 IAPMIRDSKPLRKKVSDVKTRDSGNTILQKSFPGGMLTIT------GSNSPSALASTPAR 173 Query: 194 AVFNDE------ASGTPDIINKSILGFFTE-LNPNRFWIMTSNTRRLNGWFYDIFNIPLE 246 + DE ++GT T N + T + + F E Sbjct: 174 YIIGDERDRWASSAGTEGDPWALAEARQTTFYNAKSIEVSTPTIKGASNIENGFFAGTQE 233 Query: 247 DWKRYQIDTRTVEGIDSGFH 266 W D I Sbjct: 234 RWCHKCPDCGEYHNIVFDNI 253 >gi|259908735|ref|YP_002649091.1| ATPase family protein [Erwinia pyrifoliae Ep1/96] gi|224964357|emb|CAX55866.1| ATPase family protein [Erwinia pyrifoliae Ep1/96] gi|283478708|emb|CAY74624.1| putative DNA-binding protein [Erwinia pyrifoliae DSM 12163] Length = 455 Score = 36.8 bits (83), Expect = 5.2, Method: Composition-based stats. Identities = 22/176 (12%), Positives = 52/176 (29%), Gaps = 9/176 (5%) Query: 57 EFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 E + + + I RG+GKT+L + + L I Sbjct: 29 EMLFGREKQINEIEGALYADGRHAFIYGDRGVGKTSLAQTIAVKLQQENDP--IFVGCEP 86 Query: 117 ETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTY 176 ++ L + +SK + + + + + + ++S + Sbjct: 87 KSSLSTIVQDILSKGIKSIDLAKETTLGAGVSYSGIGLSAQYKKSEKATP--QVTQSVSS 144 Query: 177 SEERPDTFVGPHNTHGMAVFNDEASGTPD----IINKSILGFFTELNPNRFWIMTS 228 + + +G H++ + DE D ++ + + N I T Sbjct: 145 AASALASLIGKHSSTP-FIVIDEFDQIEDIEERKNFGRLIKNLGDQDVNIKIIFTG 199 >gi|113474651|ref|YP_720712.1| hypothetical protein Tery_0825 [Trichodesmium erythraeum IMS101] gi|110165699|gb|ABG50239.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101] Length = 271 Score = 36.8 bits (83), Expect = 5.2, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 38/125 (30%), Gaps = 1/125 (0%) Query: 77 IFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLP 136 + I G GKTT A + W T P I I N L + S+ P Sbjct: 1 MGNICIIGPTGAGKTTYLAGLAYWPEKTNPNFQITAITNDAKNLATKAENIILNGASLEP 60 Query: 137 H-RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 ++QS P + ++ + + R Y E + + Sbjct: 61 TIIDGIKIQSFYDLPLYSFHIEIKHWWQRKPEEINLVVRDYPGEIFNELQSGMSNTLHQE 120 Query: 196 FNDEA 200 F DE Sbjct: 121 FFDEC 125 >gi|254585391|ref|XP_002498263.1| ZYRO0G06182p [Zygosaccharomyces rouxii] gi|238941157|emb|CAR29330.1| ZYRO0G06182p [Zygosaccharomyces rouxii] Length = 1055 Score = 36.8 bits (83), Expect = 5.3, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 10/134 (7%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 A++AGRG GK+ + +S +I + S LK L+ + K L ++ Sbjct: 280 ALTAGRGRGKSAALGVAIAAAVSHGY-SNIFVTSPSPENLKT-LFEFIFKGFDALGYQEH 337 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 + + + ++ + D + V DEA Sbjct: 338 IDYDIIQSTNPDFNRAIVRVDIRRDHRQTIQYILPQDSHVLGQAE--------LVVIDEA 389 Query: 201 SGTPDIINKSILGF 214 + P I K++LG Sbjct: 390 AAIPLQIVKNLLGP 403 >gi|116197284|ref|XP_001224454.1| hypothetical protein CHGG_05240 [Chaetomium globosum CBS 148.51] gi|88181153|gb|EAQ88621.1| hypothetical protein CHGG_05240 [Chaetomium globosum CBS 148.51] Length = 572 Score = 36.8 bits (83), Expect = 5.3, Method: Composition-based stats. Identities = 15/116 (12%), Positives = 32/116 (27%), Gaps = 4/116 (3%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 + PL Q + + + H + N P + I G GK+ + + Sbjct: 109 EDMPLAARDTLDTQQRQVYDTIMRHFRAKNENRRPPPLRLQIDGEGGTGKSYMVKVISSH 168 Query: 101 L----ISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSG 152 L S I+ A + + L + ++ + + Sbjct: 169 LQAKAASYGRPSPIVRAAPTGVASNQIGGQTLHSLLRLPVDGNYRSLSETLTTLNA 224 >gi|167768860|ref|ZP_02440913.1| hypothetical protein ANACOL_00177 [Anaerotruncus colihominis DSM 17241] gi|167669032|gb|EDS13162.1| hypothetical protein ANACOL_00177 [Anaerotruncus colihominis DSM 17241] Length = 644 Score = 36.8 bits (83), Expect = 5.4, Method: Composition-based stats. Identities = 23/281 (8%), Positives = 60/281 (21%), Gaps = 24/281 (8%) Query: 35 FFPWGIK--GKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS-AGRGIGKT 91 W E ++P W+ E + ++ + + A +GK+ Sbjct: 31 VTEWAEACRRLSTESSAEPGPWRTER----TPYLREPMDAFTDPRVRHIVMVAASQVGKS 86 Query: 92 TLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPS 151 + ++I PG I+ + + K ++ + P S + Sbjct: 87 EFLNNCIGYIIDEDPGS-ILFVHPTGIDAKEYSKLRIATMIRDCPTLRKKVSNPKSRDSN 145 Query: 152 GWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPH----------NTHGMAVFNDEAS 201 + + T S+ F + + Sbjct: 146 NTILQKTYPGGILTMCGSTEAHALASKPIRYVFGDERDRWALSAGNEGDPWGLAMARQTT 205 Query: 202 GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV--- 258 + + T R W + + Sbjct: 206 FYNAKAVEVSTPTIKNTSAIELAYATGTMERWKSRCPHCGEYHEIRWADIRFEYEENIIV 265 Query: 259 EGIDSGFHEGIISRYG---LDSDVARIEILGQFPQQEVNNF 296 G + S+ + ++ + + + Sbjct: 266 GRKTYKVTNVWYVCPGCACVSSEFEMKRVPAKWMAENPDAY 306 >gi|149408270|ref|YP_001294549.1| hypothetical protein ORF041 [Pseudomonas phage M6] Length = 564 Score = 36.8 bits (83), Expect = 5.4, Method: Composition-based stats. Identities = 30/205 (14%), Positives = 59/205 (28%), Gaps = 12/205 (5%) Query: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120 H S + AI +G GK+ L WL ++ +A + Sbjct: 8 EPFNHQREEWLRSREEEAR-AIFWEQGTGKSKLTIDTACWLWLRGLIDGVLVVAPNGVH- 65 Query: 121 KNTLWAEV-----SKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRT 175 +N + E+ + + + H+ ++ + ++E T Sbjct: 66 RNWVEKEIPDHVPDEVIKHVRAFHYQSPKADTKWHKQAVKAVIEHKGFAWLTISYEAFMT 125 Query: 176 YSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNG 235 S +R + + + DEA + F + + T G Sbjct: 126 ASGKRA--LIDFFDKRRLLYVLDEAHYIKTPTAERTKSILRSAKYAPFRRVLTGTPIAQG 183 Query: 236 WFYDIFNIP---LEDWKRYQIDTRT 257 F I + W + Q+ T T Sbjct: 184 PFDAYSQIKFLIDDYWNKNQLGTFT 208 >gi|115373405|ref|ZP_01460703.1| hypothetical protein STIAU_7375 [Stigmatella aurantiaca DW4/3-1] gi|310822543|ref|YP_003954901.1| helicase [Stigmatella aurantiaca DW4/3-1] gi|115369571|gb|EAU68508.1| hypothetical protein STIAU_7375 [Stigmatella aurantiaca DW4/3-1] gi|309395615|gb|ADO73074.1| Helicase [Stigmatella aurantiaca DW4/3-1] Length = 1140 Score = 36.8 bits (83), Expect = 5.4, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 17/40 (42%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 G GKTT A ++ + PG I+ +A + + Sbjct: 253 GTGKTTAVAGLIAQALRAYPGERILAVAPTNRAADELVMR 292 >gi|154312826|ref|XP_001555740.1| hypothetical protein BC1G_05114 [Botryotinia fuckeliana B05.10] gi|150849816|gb|EDN25009.1| hypothetical protein BC1G_05114 [Botryotinia fuckeliana B05.10] Length = 1056 Score = 36.8 bits (83), Expect = 5.4, Method: Composition-based stats. Identities = 24/203 (11%), Positives = 54/203 (26%), Gaps = 17/203 (8%) Query: 32 VMRFFPWGIKGKPLEHFS----QPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRG 87 + P G+ +E Q +QL+ + + +N G Sbjct: 847 MNFQNPAGMGDVDIEQPKMLQAQLKEYQLKGLNWLVNLYEQGINGILADEM--------G 898 Query: 88 IGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLS 147 +GKT + +M +L + + L N E++K++ L ++ + Sbjct: 899 LGKTVQSISVMAYLAEKHGIWGPFLVVAPASTLHN-WQQEITKFVPKLKVLPYWGTAADR 957 Query: 148 LHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDII 207 + + + + T + + DEA Sbjct: 958 KVLRKF---WDRKHITYTEEAPFHVLITSYQLVVSDVAYFQKMKWQYMILDEAQAIKSSQ 1014 Query: 208 NKSILGFFTELNPNRFWIMTSNT 230 S + ++T Sbjct: 1015 -SSRWKSLLGFHCRNRLLLTGTP 1036 >gi|149204026|ref|ZP_01880994.1| DEAD/DEAH box helicase-like protein [Roseovarius sp. TM1035] gi|149142468|gb|EDM30513.1| DEAD/DEAH box helicase-like protein [Roseovarius sp. TM1035] Length = 429 Score = 36.8 bits (83), Expect = 5.4, Method: Composition-based stats. Identities = 20/167 (11%), Positives = 41/167 (24%), Gaps = 34/167 (20%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 E ++P Q + F A G GKT ++ + Sbjct: 14 EGITEPTPIQTHAI------------PHALNGFDVLGLAQTGTGKTMAFGLPLITALMQA 61 Query: 106 PGM------SIICIANSE---TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156 PG + +A + +Q+++ L V + ++ A Sbjct: 62 PGKPAPKTIRSLILAPTRELASQIRDALLPLVKD-------------SPIKINLVVGGAS 108 Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + Q ++ + + DEA Sbjct: 109 INPQIKRLEQGTDILVATPGRLLDLIDRRAVRLDAAHFLVLDEADQM 155 >gi|310798654|gb|EFQ33547.1| DNA replication factor Dna2 [Glomerella graminicola M1.001] Length = 1618 Score = 36.8 bits (83), Expect = 5.5, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 32/119 (26%), Gaps = 5/119 (4%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTT A ++ G S++ + + T + N L +L ++ Sbjct: 1125 GTGKTTTIAHII--RALVSQGKSVLLTSYTHTAVDNILLKLKDDKTPILRLGAPAKVHPD 1182 Query: 147 -SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + ++ H T T DEAS Sbjct: 1183 VQQFAILAGQPMKSFEQIKEAWHDTPIVATTCLGVGHALFNER--TFDYCIVDEASQIT 1239 >gi|302189625|ref|ZP_07266298.1| terminase [Pseudomonas syringae pv. syringae 642] Length = 561 Score = 36.8 bits (83), Expect = 5.5, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 57/196 (29%), Gaps = 16/196 (8%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST--RPGMS 109 W EF+ A+ T F IS GK+T+ A +ML + R Sbjct: 57 RSWVNEFVAAIFGAYDPYSGRRMITEFMLLISK--KNGKSTIAAGIMLTALVLNWRTSGE 114 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I +A ++ N+ + +H F++Q + + + + DS+ Sbjct: 115 FIILAPTKEIADNSYIPIRDMVKADDELKHLFKVQDHLRTVTHYETGATLKVVAADSET- 173 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 ++ + D EA+G G + W T + Sbjct: 174 -VSGKKAIGVFIDELWVFGKRANAEAMLREATG----------GLASRPEGFIIWATTQS 222 Query: 230 TRRLNGWFYDIFNIPL 245 G F Sbjct: 223 DEPPAGVFRQKLLYAR 238 >gi|29826538|ref|NP_828844.1| putative helicase [Streptomyces avermitilis MA-4680] gi|29611336|dbj|BAC75379.1| putative helicase [Streptomyces avermitilis MA-4680] Length = 885 Score = 36.8 bits (83), Expect = 5.5, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 36/153 (23%), Gaps = 28/153 (18%) Query: 75 PTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT--LWAEVSK-- 130 P + I + G GKT A L G I+ + L T W V Sbjct: 31 PQGARGTIVSATGSGKTFTAAACAL---ECFSGGRILVTVPTLDLLVQTAQAWRLVGHRS 87 Query: 131 ------------WLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSE 178 L+ L R L+L + + + + Sbjct: 88 PMVAVCSLENDPVLNELGVRTTTNPIQLALWAGAGTVVVFATYASLVDREDFDDPMGQRK 147 Query: 179 ER---------PDTFVGPHNTHGMAVFNDEASG 202 R + G DEA G Sbjct: 148 VRGPLEAALAGGERLYGQQMAGFDLAIVDEAHG 180 >gi|108762196|ref|YP_633652.1| hypothetical protein MXAN_5509 [Myxococcus xanthus DK 1622] gi|108466076|gb|ABF91261.1| conserved domain protein [Myxococcus xanthus DK 1622] Length = 1214 Score = 36.8 bits (83), Expect = 5.6, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 17/40 (42%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 G GKTT A ++ + PG I+ +A + + Sbjct: 318 GTGKTTAVADLIARALRAFPGERILAVAPTNRAADELVLR 357 >gi|330974347|gb|EGH74413.1| terminase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 561 Score = 36.8 bits (83), Expect = 5.7, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 56/196 (28%), Gaps = 16/196 (8%) Query: 52 HRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIST--RPGMS 109 W EF+ A+ + F IS GK+T+ A +ML + R Sbjct: 57 RPWVNEFVAAIFGAYDPYSGRRMISEFMLLISK--KNGKSTIAAGIMLTALVLNWRTSGE 114 Query: 110 IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHY 169 I +A ++ N+ + + F++Q + + + + DS+ Sbjct: 115 FIILAPTKEIADNSYIPIRDMIKADDELKALFKVQDHLRTVTHYETGATLKVVAADSET- 173 Query: 170 TITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 ++ + D EA+G G + W T + Sbjct: 174 -VSGKKAIGVFIDELWVFGKRANAEAMLREATG----------GLASRPEGFIIWATTQS 222 Query: 230 TRRLNGWFYDIFNIPL 245 G F Sbjct: 223 DEPPAGVFRQKLLYAR 238 >gi|300709278|ref|XP_002996805.1| hypothetical protein NCER_100065 [Nosema ceranae BRL01] gi|239606130|gb|EEQ83134.1| hypothetical protein NCER_100065 [Nosema ceranae BRL01] Length = 825 Score = 36.8 bits (83), Expect = 5.7, Method: Composition-based stats. Identities = 33/260 (12%), Positives = 73/260 (28%), Gaps = 37/260 (14%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q E ++ N ++ AGRG GK+ + + SI + Sbjct: 230 QTEVLKEFM-----NAVKDRTERTIFSLQAGRGRGKSVAL-GLAIAKAVELKYSSIYISS 283 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 + +K L+ + K L L ++ + + Y+ ++ + + + Sbjct: 284 PALENIK-MLFTFLIKGLEALGYKKYEDF-------KIVYSFKSKKRLVQRIEVLRNMKQ 335 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGT----------PDIINKSILGFFTELNPNRFW 224 T P + H DEA+ P++I + E F Sbjct: 336 TVEYFNPFDELKYH---PDMFVIDEAAAIPLPLLKKLLFPNLIFMATTSSGYEGTGRAFS 392 Query: 225 IMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGI--DSGFHEGIISRYGLDSDVARI 282 S Y ++ Y+ ++ E ++ L + + Sbjct: 393 TKMS--------EYLHEQSNSDNPFSYKELFMNASIRYGNNDPVEKWLNNTLLLNIDIKK 444 Query: 283 EILGQFPQQEVNNFIPHNYI 302 P ++ + + Sbjct: 445 INKCPVPSSCDLYYVDKDVL 464 >gi|145300612|ref|YP_001143453.1| ATP-dependent RNA helicase DbpA [Aeromonas salmonicida subsp. salmonicida A449] gi|142853384|gb|ABO91705.1| ATP-dependent RNA helicase DbpA [Aeromonas salmonicida subsp. salmonicida A449] Length = 459 Score = 36.8 bits (83), Expect = 5.8, Method: Composition-based stats. Identities = 21/189 (11%), Positives = 46/189 (24%), Gaps = 10/189 (5%) Query: 80 CAISAGRGIGKTTLNAWMMLWLI-STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 A G GKT A +L + R + + + + E+ + LP+ Sbjct: 44 LIAKAKTGSGKTAAFALGLLAKLNVNRLEVQALVLCPTRELADQVAQ-EIRRLARALPNV 102 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + + QS + + + + + D Sbjct: 103 KLVTL--------CGGTQTAPQSATLGFGAHIAVGTPGRILKHLEQGTLELSGLKTLVLD 154 Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 EA D+ + P + + + G + + Sbjct: 155 EADRMLDMGFGEEINRVISYAPEQRQTLLFSATYPEGIAQMSRGVQRNPVEVSVESLHEG 214 Query: 259 EGIDSGFHE 267 I+ +E Sbjct: 215 SAIEQKLYE 223 >gi|258653643|ref|YP_003202799.1| hypothetical protein Namu_3485 [Nakamurella multipartita DSM 44233] gi|258556868|gb|ACV79810.1| hypothetical protein Namu_3485 [Nakamurella multipartita DSM 44233] Length = 478 Score = 36.8 bits (83), Expect = 5.9, Method: Composition-based stats. Identities = 42/333 (12%), Positives = 86/333 (25%), Gaps = 63/333 (18%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 + WQ + V + + + + + GR GK + + L + Sbjct: 31 YGVGLDEWQAAVICGV---LRESGSGWSASQAGLVV--GRQNGKGQILLALELAGLLLLR 85 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDS 166 ++ A++ + V+ L+ ++ ++ + + S Sbjct: 86 ES-VLHTAHAVKTSSDAFRRLVAVV---------DGHDDLTRLVRRRSHQVGQEFLELAS 135 Query: 167 KHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFF----------- 215 + + DEA P ++ Sbjct: 136 GSRVSFTTR-------SASAGRGLSIDRLVVDEAEDLPAAEVGALAPTVFARPRAQSLYV 188 Query: 216 -TELNPNRFWIMTSNTRRLNGW-------FYDIFNIPLEDWKRYQIDTRTVE-----GID 262 T P + RR +++ +D ++ R + Sbjct: 189 GTAPGPMHDAEAFTTMRRAAHHGLNPRLAWWEWCAQWGDDIDDQKLWVRVNPAVASGRVP 248 Query: 263 SGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDDLYAPLI--- 319 + S D R E L F + + + E D+ APL Sbjct: 249 LQAIQDDRSIL--PPDQFRAERLSMFLPRSSGPVV----FDPRRWDELTDEGSAPLRDIS 302 Query: 320 MGCD--IAGEGGDKTVVVF--RRGNIIEHIFDW 348 +G D + D V RR + HI +W Sbjct: 303 IGVDAPPSR---DAVTVCIAGRRADDRLHI-EW 331 >gi|313575375|emb|CBR26904.1| hypothetical protein [Streptococcus phage phi-SsUD.1] Length = 530 Score = 36.8 bits (83), Expect = 6.0, Method: Composition-based stats. Identities = 40/324 (12%), Positives = 81/324 (25%), Gaps = 53/324 (16%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ + + + + N T + I + GK+ L A + L+L+ Sbjct: 48 PWQEQIVRDLFGIVKEDGNRQFLTAY---IEIPKKNGKSELAAAIALYLLYADNEA---- 100 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 A + A + F++ + S + + Sbjct: 101 SAEVYGAACDRNQASIV-----------FDVAKQMVQMSRPLEKRSKIMGATKRIVNYSN 149 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT-- 230 Y +T H + + DE P+ +L + + T Sbjct: 150 AGFYQVLSAETG-TKHGLNVSGLVFDEIHAQPNRHLYDVLTKGSGDAREQPLFFIITTAG 208 Query: 231 RRLNGWFYDIFNIP----------------------LEDW----KRYQIDTRTVEGIDSG 264 N Y++ +DW + + I Sbjct: 209 TDRNSICYELHTKALDILNGRKKDTSFYPVVYGLSDEDDWNDEANWRRANPSLGHTIGID 268 Query: 265 FHEGIISRYGLDS---DVARIEILGQFPQQEVNNFIPHN-YIEEAMSREAIDDLYAPLIM 320 + + +V + L + V +IP + Y + + + Sbjct: 269 RVREAYQQALDNPAEENVFKQLRLNMWTSSSV-AWIPEHVYAKGNVPIQYESLKGRSCYA 327 Query: 321 GCDIAGEGGDKTVVVFRRGNIIEH 344 G D++ D T V E Sbjct: 328 GLDLSST-SDITAFVLVFPPRFEE 350 >gi|242803128|ref|XP_002484111.1| nucleolar ATPase Kre33, putative [Talaromyces stipitatus ATCC 10500] gi|218717456|gb|EED16877.1| nucleolar ATPase Kre33, putative [Talaromyces stipitatus ATCC 10500] Length = 1064 Score = 36.8 bits (83), Expect = 6.0, Method: Composition-based stats. Identities = 21/150 (14%), Positives = 42/150 (28%), Gaps = 15/150 (10%) Query: 55 QLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA 114 Q + + S ++AGRG GK+ + +I + Sbjct: 261 QAKALLTFVDAIAEKTLRST-----VTLTAGRGRGKSAALGVAIA-AAVAHGYSNIFITS 314 Query: 115 NSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCR 174 S LK L+ V K L + + L + ++ ++ + + + Sbjct: 315 PSPENLKT-LFEFVFKGFDALGYLDHVDYTILQSTNPAFNKAIVRVNIHRNHRQTIQYIQ 373 Query: 175 TYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + DEA+ P Sbjct: 374 PQDAYALGQAE--------LLVIDEAAAIP 395 >gi|239817529|ref|YP_002946439.1| exodeoxyribonuclease V, subunit alpha [Variovorax paradoxus S110] gi|239804106|gb|ACS21173.1| exodeoxyribonuclease V, alpha subunit [Variovorax paradoxus S110] Length = 708 Score = 36.5 bits (82), Expect = 6.2, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 50/194 (25%), Gaps = 28/194 (14%) Query: 37 PWGIKGKPLEHFSQPH-----RWQLEFMEAVDVHCHSNVNNSNPTIFKCAIS-AGRGIGK 90 W + P + + P WQ + K +I G G GK Sbjct: 184 MWLDRLFPADTHASPDSEAAIDWQKAAC-------------AVALRSKLSILTGGPGTGK 230 Query: 91 TTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHP 150 T A ++ L + P +L+ L A K + L + L Sbjct: 231 TYTAARLLALLYAVDPAP---------ERLRIALAAPTGKAAARLKQAIETSLTELQDRL 281 Query: 151 SGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKS 210 + + ++ + R F H V DEAS + + Sbjct: 282 GDSLSLGALAAHIGAARTLHALLGARPDTRAFGFDAAHPLDVDVVIVDEASMIHLEMMAA 341 Query: 211 ILGFFTELNPNRFW 224 +L Sbjct: 342 LLEALPTQARVILL 355 >gi|323138129|ref|ZP_08073202.1| double-strand break repair helicase AddA [Methylocystis sp. ATCC 49242] gi|322396591|gb|EFX99119.1| double-strand break repair helicase AddA [Methylocystis sp. ATCC 49242] Length = 1145 Score = 36.5 bits (82), Expect = 6.3, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 37/132 (28%), Gaps = 7/132 (5%) Query: 59 MEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR-PGMSIICIANSE 117 + V + +++ +SA G GKT + + ++ L+ R P I+C+ ++ Sbjct: 3 IRPVGSLTKNAQRDASDPAASAWVSANAGSGKTHVLSQRVVRLLLARVPPSRILCLTYTK 62 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177 N W + SL S + + R Sbjct: 63 AAAANMSARIFDVLAR------WALLDDESLIREIEATGADRPSRAELNVARCLFARAVE 116 Query: 178 EERPDTFVGPHN 189 H Sbjct: 117 TPGGLKIQTIHA 128 >gi|16798785|ref|NP_463463.1| putative terminase large subunit [Listeria phage A118] gi|254831265|ref|ZP_05235920.1| putative terminase large subunit from bacteriophage A118 [Listeria monocytogenes 10403S] gi|5823600|emb|CAB53788.1| putative terminase large subunit [Listeria phage A118] Length = 443 Score = 36.5 bits (82), Expect = 6.3, Method: Composition-based stats. Identities = 20/227 (8%), Positives = 62/227 (27%), Gaps = 22/227 (9%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 GR K+++ + ++ P +++C+ L +++ ++ L + Sbjct: 36 IIAKGGRSSMKSSVISLKLVEKKMANPMSNMVCLRKVANTLYKSVYQQIKWALYEMGVAD 95 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 F+ + + + + + + ++ +E Sbjct: 96 QFKFGKSPM------------EIVHKTWGTGFYFSGCDDPAKLKSMKIPVGYVSGLWFEE 143 Query: 200 AS------GTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPL--EDWKRY 251 + + + I + ++ + R W + + +D+ + Sbjct: 144 LAEFSGVTDIDVVEDTFIREDLPQGQEVTIYMSFNPPRNPYEWVNEYVDSKRSDDDYLIH 203 Query: 252 QIDTRT--VEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNF 296 + + I D D R LG+ N + Sbjct: 204 HTTYLDDEKGFLSKQIIKKIEKYKKNDLDYYRWMYLGEVIGLGDNVY 250 >gi|167392422|ref|XP_001740146.1| chromodomain helicase DNA binding protein [Entamoeba dispar SAW760] gi|165895824|gb|EDR23413.1| chromodomain helicase DNA binding protein, putative [Entamoeba dispar SAW760] Length = 1623 Score = 36.5 bits (82), Expect = 6.4, Method: Composition-based stats. Identities = 25/194 (12%), Positives = 54/194 (27%), Gaps = 12/194 (6%) Query: 38 WGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTT-LNAW 96 W ++ P H + +Q+E + + + G+GKT + A+ Sbjct: 636 WQVQEHPYRHDNTLRSYQMEGLNWLVFNWCRGKGCILADEM--------GLGKTVQVVAF 687 Query: 97 MMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAE 156 + + + T E+++W M + ++ L + Sbjct: 688 FEHLRSFQKLPGPFLVVTPLSTL--EHWRREINEWTDMNVVVYLGTKENRQLIQHYEWFY 745 Query: 157 LLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFT 216 L + I + T E + DEA + + T Sbjct: 746 LNKDEKEISKQIKFHALITTYEMIMSDYEILSQIRWQVTVVDEAQRLKNKS-SKLNKTLT 804 Query: 217 ELNPNRFWIMTSNT 230 E+ ++T Sbjct: 805 EIPSYHKILLTGTP 818 >gi|182419733|ref|ZP_02950974.1| ABC transporter, ATP-binding protein [Clostridium butyricum 5521] gi|237665701|ref|ZP_04525689.1| ABC transporter, ATP-binding protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376470|gb|EDT74051.1| ABC transporter, ATP-binding protein [Clostridium butyricum 5521] gi|237658648|gb|EEP56200.1| ABC transporter, ATP-binding protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 571 Score = 36.5 bits (82), Expect = 6.4, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 8/118 (6%) Query: 68 SNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAE 127 +N++ S K AI G GK+T+ WL+ ++ CI + +K+ Sbjct: 348 NNLSFSLKPGEKLAIIGPTGSGKSTIA-----WLLLRFYDVNEGCILINGKNIKDIGIDC 402 Query: 128 VSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185 + K +S+ P + S+ + ++ + + S ++ + P+ F Sbjct: 403 LRKDISIAPQKPMLFSGSIDENIKWGKTNASDEEIKMAS---IKAGASFIDSMPEGFN 457 >gi|218186505|gb|EEC68932.1| hypothetical protein OsI_37627 [Oryza sativa Indica Group] Length = 1041 Score = 36.5 bits (82), Expect = 6.6, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 60/227 (26%), Gaps = 19/227 (8%) Query: 73 SNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS---ETQLKNTLWAEVS 129 A+ A RG GK+ + I+ +I A S L + + ++ Sbjct: 272 DKSLRSTVALLAARGRGKSAALGLAIAGAIAAGY-SNIFVTAPSPENLKTLFDFVCKGMN 330 Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189 + + + + + Y ++ + + Sbjct: 331 ALEYKEHLHYDVVKSADPELKKATIQINVYKQHRQTIQTYHLSDVGGKGLQSSNCYLKPH 390 Query: 190 TH-----GMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP 244 H + DEA+ P I KS+LG + F T N G + + Sbjct: 391 DHGKLSQVELLVIDEAAAIPLPIVKSLLGPYL-----VFLSSTVNGYEGTGRSLSLKLLQ 445 Query: 245 LEDWKRYQIDTRTVEGIDS-----GFHEGIISRYGLDSDVARIEILG 286 + + +E I G + ++L Sbjct: 446 QLESQSQPSAPSNGPNSSRLFKKIELNESIRYASGDPIESWLNDLLC 492 >gi|330828193|ref|YP_004391145.1| ATP-dependent RNA helicase DbpA [Aeromonas veronii B565] gi|328803329|gb|AEB48528.1| ATP-dependent RNA helicase DbpA [Aeromonas veronii B565] Length = 459 Score = 36.5 bits (82), Expect = 6.8, Method: Composition-based stats. Identities = 21/189 (11%), Positives = 44/189 (23%), Gaps = 10/189 (5%) Query: 80 CAISAGRGIGKTTLNAWMMLWLI-STRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHR 138 A G GKT +L + R + + + + E+ + LP+ Sbjct: 44 LIAKAKTGSGKTAAFGLGLLAKLNVNRLEVQALVLCPTRELADQVAQ-EIRRLARALPNV 102 Query: 139 HWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND 198 + QS + + + + + D Sbjct: 103 KLVTL--------CGGTPTAPQSATLSFGAHIAVGTPGRILKHLEQGTLELSGLKTLVLD 154 Query: 199 EASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTV 258 EA D+ + P R + + G + + Sbjct: 155 EADRMLDMGFGEDINRVISYAPERRQTLLFSATYPEGIAQMSRGVQRNPVEVSVESLHEG 214 Query: 259 EGIDSGFHE 267 I+ +E Sbjct: 215 SAIEQKLYE 223 >gi|15889610|ref|NP_355291.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58] gi|15157502|gb|AAK88076.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58] Length = 502 Score = 36.5 bits (82), Expect = 6.8, Method: Composition-based stats. Identities = 14/159 (8%), Positives = 42/159 (26%), Gaps = 20/159 (12%) Query: 47 HFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRP 106 ++ P Q + + + A G GKT ++ ++ + Sbjct: 33 GYTTPTPIQAKAIPLLLEG------------RDLIGLAQTGTGKTAAFGLPIIEMLMKQA 80 Query: 107 GMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSG--WYAELLEQSMGI 164 + + + A + ++ + ++ L + A + +Q + + Sbjct: 81 D------RPANRTTRTLILAPTRELVNQIGDNLRSFVKKTPLRINQVVGGASINKQQLQL 134 Query: 165 DSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGT 203 + + + + DEA Sbjct: 135 EKGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQM 173 >gi|255947606|ref|XP_002564570.1| Pc22g05360 [Penicillium chrysogenum Wisconsin 54-1255] gi|211591587|emb|CAP97824.1| Pc22g05360 [Penicillium chrysogenum Wisconsin 54-1255] Length = 1667 Score = 36.5 bits (82), Expect = 6.9, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 35/120 (29%), Gaps = 7/120 (5%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTT A ++ G S++ + + T + N L + +L ++ Sbjct: 1166 GTGKTTTIAHII--RALVAQGKSVLLTSYTHTAVDNILLKIRDDDIRVLRIGATAKVHPD 1223 Query: 147 --SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + + + + T + F DEAS Sbjct: 1224 VQEFADLAAIPKSTIEELKDSYEKPQVVATTCLGVNHNIFNQ---RIFDYCIVDEASQIT 1280 >gi|154292679|ref|XP_001546910.1| hypothetical protein BC1G_14724 [Botryotinia fuckeliana B05.10] gi|150845806|gb|EDN20999.1| hypothetical protein BC1G_14724 [Botryotinia fuckeliana B05.10] Length = 1615 Score = 36.5 bits (82), Expect = 6.9, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 37/118 (31%), Gaps = 3/118 (2%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTT A ++ G S++ + + T + N L + +L ++ Sbjct: 1099 GTGKTTTIAHII--RALVSQGKSVLLTSYTHTAVDNILLKLRDDSIPILRLGTKAKIHPD 1156 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + A +++M + T + + DEAS Sbjct: 1157 -VQEFAKLAVDPKETMEEIRSVWHDTPIIATSCLGINHPIFNERTFDYCIVDEASQIT 1213 >gi|116180036|ref|XP_001219867.1| predicted protein [Chaetomium globosum CBS 148.51] gi|88184943|gb|EAQ92411.1| predicted protein [Chaetomium globosum CBS 148.51] Length = 281 Score = 36.5 bits (82), Expect = 7.0, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 26/85 (30%), Gaps = 11/85 (12%) Query: 14 ELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNS 73 ++ ++ E ++ F W LE + +A + Sbjct: 1 MVNSLVWSPEEA----KYLKAIFHWQEAEPSLEEERR-------RRQAEEDERKRQEERK 49 Query: 74 NPTIFKCAISAGRGIGKTTLNAWMM 98 F+ + GRG GKT + + Sbjct: 50 PAGEFRVLVIGGRGTGKTAILTRSI 74 >gi|330942276|ref|XP_003306133.1| hypothetical protein PTT_19173 [Pyrenophora teres f. teres 0-1] gi|311316527|gb|EFQ85773.1| hypothetical protein PTT_19173 [Pyrenophora teres f. teres 0-1] Length = 1673 Score = 36.5 bits (82), Expect = 7.0, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 35/118 (29%), Gaps = 3/118 (2%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKTT A ++ G S++ + + T + N L + +L ++ Sbjct: 1142 GTGKTTTIAHII--RTLVAKGKSVLLTSYTHTAVDNILLKIRDDKIGILRLGAAKKIHP- 1198 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTP 204 + + S+ + + + + DEAS Sbjct: 1199 EVREFATLGAEPKDSVEELERSWMEPPVVATTCLTINHPLFNRRVFDYCIVDEASQIT 1256 >gi|172035718|ref|YP_001802219.1| cob(I)alamin adenosyltransferase [Cyanothece sp. ATCC 51142] gi|171697172|gb|ACB50153.1| cob(I)alamin adenosyltransferase [Cyanothece sp. ATCC 51142] Length = 224 Score = 36.5 bits (82), Expect = 7.2, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 42/117 (35%), Gaps = 3/117 (2%) Query: 31 FVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGK 90 F+ W IK + S P ++Q + ++ S ++ G G GK Sbjct: 9 FLFIKTDWLIKMTTDTNLS-PEQYQQKMQRRKEIQEKRLAEASQEKGL-IIVNTGNGKGK 66 Query: 91 TTLNAWMMLWLISTRPGMSII-CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 TT M++ + ++I+ I + + + ++ L L F ++ Sbjct: 67 TTAALGMVVRSLGHGFRVAIVQFIKGAWEPAEKAVLSQWENQLEFLAMGEGFTWETQ 123 >gi|329768424|ref|ZP_08259916.1| hypothetical protein HMPREF0428_01613 [Gemella haemolysans M341] gi|328836986|gb|EGF86631.1| hypothetical protein HMPREF0428_01613 [Gemella haemolysans M341] Length = 499 Score = 36.5 bits (82), Expect = 7.3, Method: Composition-based stats. Identities = 29/212 (13%), Positives = 58/212 (27%), Gaps = 18/212 (8%) Query: 138 RHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTF--VGPHNTHGMAV 195 W+ + SL + W + G + + + Y + Sbjct: 117 NAWYYYNNGSLVVNKWVGNYWLGADGRMATNSWVDNNRYYVGTDGAWVKDAKRPEEKKQG 176 Query: 196 FNDEASGTPDIINKSILGFFTELN-PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254 + EA+ +I G +W+ N W + D + Sbjct: 177 WVKEANTW---FYYNIDGTLARNKWAGNYWLGADGRMATNSWVDNNRYYVGNDGAWVKDA 233 Query: 255 TRTVEGIDSGFHEGI--ISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEE-------- 304 R E +G+ + Y D +AR + G + +++++ Sbjct: 234 KRQ-EEKKTGWVKEANTWYYYNTDGTLARNKWAGNYWLGVDGKMATNSWVDNGRYYVGSN 292 Query: 305 -AMSREAIDDLYAPLIMGCDIAGEGGDKTVVV 335 A ++A D + D G D V Sbjct: 293 GAWVKDASRDKNTKRAIFLDPGHGGSDSGAVA 324 >gi|331090179|ref|ZP_08339067.1| phage terminase [Lachnospiraceae bacterium 3_1_46FAA] gi|330402125|gb|EGG81697.1| phage terminase [Lachnospiraceae bacterium 3_1_46FAA] Length = 533 Score = 36.5 bits (82), Expect = 7.4, Method: Composition-based stats. Identities = 42/330 (12%), Positives = 87/330 (26%), Gaps = 57/330 (17%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 KG + WQ + + + N T + I + GK+ L A + L Sbjct: 38 KGTWAGKPFELIDWQEQIIRDLFGVLKPNGYRQFNTAY---IEIPKKQGKSELAAAVALL 94 Query: 101 LISTRPGMS--IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 L+ + A Q K ++ + P +LS ++ Sbjct: 95 LLCGDGEERAEVYGCAADRNQAK-IVFDVAVDMVRFCP--------ALSKRVKILESQKK 145 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTE 217 + +S + ++ H + V DE P+ + +L + Sbjct: 146 ITYLPTNSSYQVLSA---------DVANKHGFNTHGVIFDELHTQPNRKLFDVMLQGSGD 196 Query: 218 LNPNRFWIMTSNTRRLNGWFYDIFNIPLED-----------WKRYQIDTRTVEGIDSGFH 266 + + + + D + + D Sbjct: 197 ARMQPLYFLITTAGNDTNSICYEVHQKAIDIAEGRKVDPTFYSVIYGAAEDEDWTDPEVW 256 Query: 267 E-------------------GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307 + + + + R L Q+ +Q V ++P + Sbjct: 257 KKANPSLGITVGIDKVKAACESAQQNPGEENAFRQLRLNQWVKQSV-RWMPMEKWDVCAF 315 Query: 308 REAIDDLYAPLIM-GCDIAGEGGDKTVVVF 336 + DDL + G D++ D T V Sbjct: 316 PVSEDDLEGRICYGGLDLSST-TDITAFVL 344 >gi|217966247|ref|YP_002351925.1| phage terminase, large subunit, pbsx family [Listeria monocytogenes HCC23] gi|217335517|gb|ACK41311.1| phage terminase, large subunit, pbsx family [Listeria monocytogenes HCC23] gi|307572148|emb|CAR85327.1| bacteriophage terminase large subunit [Listeria monocytogenes L99] Length = 443 Score = 36.5 bits (82), Expect = 7.5, Method: Composition-based stats. Identities = 31/258 (12%), Positives = 71/258 (27%), Gaps = 32/258 (12%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 GR K+++ + ++ P +++C+ L +++ ++ L + Sbjct: 36 IIAKGGRSSMKSSVISLKLVEKKMANPQSNMVCLRKVANTLYKSVYQQIKWALYEMGVAD 95 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFND- 198 F + + + + + A++ + Sbjct: 96 QFNFGKSPM------------EIIHKKWGTGFYFSGCDDPAKLKSMKIPVGYVSALWFEE 143 Query: 199 --EASGTPDIINKSILGFFTELNPNRFWIMTS----NTRRLNGWFYDIFNIPL---EDWK 249 E SG DI + F + +T+ N R + + + +D+ Sbjct: 144 LAEFSGVTDI--DVVEDTFIREDLPDNQEVTTYMSFNPPRNPYEWVNEYVDNRRSDDDYL 201 Query: 250 RYQIDT--RTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307 + + + I D D R LG+ +N N + Sbjct: 202 IHHTTYLNDEKGFLSKQIIKKIEKYKKNDFDYYRWMYLGE-VIGLGDNVYNMNLFQSLN- 259 Query: 308 REAIDDLYAPLIMGCDIA 325 LI+ D A Sbjct: 260 ---AIPADDRLIL-IDFA 273 >gi|126461416|ref|YP_001042530.1| phage terminase [Rhodobacter sphaeroides ATCC 17029] gi|126103080|gb|ABN75758.1| phage Terminase [Rhodobacter sphaeroides ATCC 17029] Length = 583 Score = 36.5 bits (82), Expect = 7.6, Method: Composition-based stats. Identities = 38/312 (12%), Positives = 78/312 (25%), Gaps = 52/312 (16%) Query: 78 FKCAISAGRGIGKTTLNAWMMLWLISTRPG--MSIICIANSETQLKNTLWAEVSKWLSML 135 + I G+G GK+ L + L+ + + A Q + L+ + + Sbjct: 94 RRAYIEQGKGNGKSPLAGGIGLYGMMADREAGAQVYAAAAKMDQAR-ILFGDAVSMVRQS 152 Query: 136 PHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAV 195 P + + P+G + T + DT V Sbjct: 153 P------LLESRITPTGVNPVNNLADLR--------TGSFFRPLGRDTGKTGSGLRPHFV 198 Query: 196 FNDEASGTP-DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIP---------L 245 DE P + + F ++T++ N ++ Sbjct: 199 LLDELHEHPSRDTLEMLERGFKFRRQPLLLMITNSGSDRNSVCWEEHVHAVAVAHGEVED 258 Query: 246 EDWKRYQIDTRT--------------VEGIDSGFHEGIISRYGLDSDVARIEILGQ---- 287 + + + E ++ + + G Sbjct: 259 DTTFSFVCSLDEGDDPLNDPSCWKKANPLLGVTLSEAYLADVAAQARAIPGKANGILRLH 318 Query: 288 --FPQQEVNNFIPHNYIEEAMSREAIDD--LYAPLIMGCDIAGEGGDKT--VVVFRRGNI 341 +I E D +G D+ D T +VFR G Sbjct: 319 FCVWTDAEAAWIARETWEACEDASLRLDDFEGEDAWVGLDLGAT-KDLTWRALVFRDGMT 377 Query: 342 IEHIFDWSAKLI 353 E + + + ++I Sbjct: 378 EERVDEATGQVI 389 >gi|311742723|ref|ZP_07716532.1| helicase [Aeromicrobium marinum DSM 15272] gi|311314351|gb|EFQ84259.1| helicase [Aeromicrobium marinum DSM 15272] Length = 547 Score = 36.5 bits (82), Expect = 7.7, Method: Composition-based stats. Identities = 18/157 (11%), Positives = 47/157 (29%), Gaps = 10/157 (6%) Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 +N+ ++ + + + G G GKT L L ++ G+ + ++ + + Sbjct: 212 QANILDATQALTRVEVRGGAGSGKTWLAVEQARRLAAS--GLRVALLSYTRGLSEWM--- 266 Query: 127 EVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVG 186 + + +P + + + W ++ + + Sbjct: 267 -RRRVSTFVPTDRPAYVGTFHDIGAMWGHQVDRDNNDQHFWEVELPATLLDL----AGRQ 321 Query: 187 PHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRF 223 P A+ DEA D +L + + Sbjct: 322 PVAELFDAIVIDEAQDFADDWWPVVLEALKYEDDRLY 358 >gi|313107129|ref|ZP_07793329.1| phage uncharacterized protein [Pseudomonas aeruginosa 39016] gi|310879831|gb|EFQ38425.1| phage uncharacterized protein [Pseudomonas aeruginosa 39016] Length = 550 Score = 36.5 bits (82), Expect = 7.9, Method: Composition-based stats. Identities = 34/303 (11%), Positives = 74/303 (24%), Gaps = 25/303 (8%) Query: 22 AECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCA 81 ++ F +FP +K + + ++ +P A Sbjct: 42 ERASADYEYFARTYFPHYVK-------------RGNALLHDYLYKRLPELVDHPDGQHEA 88 Query: 82 ISAGRGIGKTTLNA-WMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHW 140 I+A RG K+TL + ++W + T + I ++ Q L A ++ Sbjct: 89 IAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNPRLAMD 148 Query: 141 FEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEA 200 F + + + R P DE Sbjct: 149 FPQGAGKGRVWQVGTIVTANDAKVQVFGSGKRMRGLR-HGPHRPDLVIGDDLEN---DEN 204 Query: 201 SGTP------DIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQID 254 +P + K + + I+ + + PL ++++ Sbjct: 205 VRSPEQRDKLENWLKKTVLSLGSADDTMDVIIIGTILHYDSVLSRLLKNPLWKRRKFKAI 264 Query: 255 TRTVEGIDS-GFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMSREAIDD 313 +D E ++ + A + E I + Sbjct: 265 IEWPHRMDLWEKWEELLLNSDDEGAAALAFYQERVAAMEDGAIICWPDGQPLYKLMVKRA 324 Query: 314 LYA 316 Sbjct: 325 RDG 327 >gi|298248271|ref|ZP_06972076.1| NERD domain protein [Ktedonobacter racemifer DSM 44963] gi|297550930|gb|EFH84796.1| NERD domain protein [Ktedonobacter racemifer DSM 44963] Length = 551 Score = 36.5 bits (82), Expect = 7.9, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 52/166 (31%), Gaps = 10/166 (6%) Query: 64 VHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNT 123 + + + AIS G GKT + L + G S++ + Sbjct: 217 TQEQFQLLDFLRHHRRVAISGCAGSGKTLMAVEKAKKL--HQQGFSVLLTCYNYNLA--- 271 Query: 124 LWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDT 183 A + + ++ P+ H L H + L E+++ S+ Y T Sbjct: 272 --AYLRESVNDYPNIHVHHFHGLCSHLAKEAGLLNEKALQSPSQDYYNTTLPSLLFEAID 329 Query: 184 FVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSN 229 V A+ DE + ++ + + F+I N Sbjct: 330 RVDWR---VDAIVIDEGQDFREEWELALQYLLHDPDNGIFYIFYDN 372 >gi|189218339|ref|YP_001938981.1| PHP family phosphoesterase fused to chromosome segregation ATPase [Methylacidiphilum infernorum V4] gi|189185197|gb|ACD82382.1| PHP family phosphoesterase fused to chromosome segregation ATPase [Methylacidiphilum infernorum V4] Length = 930 Score = 36.1 bits (81), Expect = 7.9, Method: Composition-based stats. Identities = 22/145 (15%), Positives = 35/145 (24%), Gaps = 14/145 (9%) Query: 81 AISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTL-----------WAEVS 129 AI GRG GK+TL L + R +AN + +N A+++ Sbjct: 312 AIIGGRGTGKSTLV--EFLRIALQREDELPAALANDFQKYRNVYQSRDDNGLLTDQADLT 369 Query: 130 KWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHN 189 + R + D + F + Sbjct: 370 VYYRKDRTRFRIHWSPNQT-AVPIEVQNENGDWQSDPGDVAQRFPVRIYSQKQIFEVAKD 428 Query: 190 THGMAVFNDEASGTPDIINKSILGF 214 + DEA K Sbjct: 429 PQELLRIVDEAREVGRPSWKEDWNA 453 >gi|296131145|ref|YP_003638395.1| NERD domain protein [Cellulomonas flavigena DSM 20109] gi|296022960|gb|ADG76196.1| NERD domain protein [Cellulomonas flavigena DSM 20109] Length = 555 Score = 36.1 bits (81), Expect = 8.0, Method: Composition-based stats. Identities = 21/160 (13%), Positives = 41/160 (25%), Gaps = 13/160 (8%) Query: 67 HSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWA 126 ++ + + + G G GKT L ++++C + L L Sbjct: 213 QAHAMRHLDAVRRVHVVGGAGTGKTWLALEHARRRARAGERVALMCYS---RGLARYLER 269 Query: 127 EVSKW-LSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFV 185 + W P + + + R E Sbjct: 270 TCATWPARERPAYVGLFHELPVRWGAAPGDDADPTDWE---------ERLPRELGDLAAS 320 Query: 186 GPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWI 225 + AV DEA D ++L + + R + Sbjct: 321 RVPDELFDAVVVDEAQDFGDAWWPALLRCLRDPDAGRLAV 360 >gi|227498314|ref|ZP_03928464.1| prophage protein [Acidaminococcus sp. D21] gi|226903776|gb|EEH89694.1| prophage protein [Acidaminococcus sp. D21] Length = 530 Score = 36.1 bits (81), Expect = 8.0, Method: Composition-based stats. Identities = 23/268 (8%), Positives = 63/268 (23%), Gaps = 31/268 (11%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKT-TLNAWMMLWLISTRPGMSII 111 WQ + + + N T + I + GK+ A + L + + + Sbjct: 48 PWQEQIVRDLFGIVKKNGKRQFLTAY---IEIPKKNGKSELAAAIALYLLYADNEPSAEV 104 Query: 112 CIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTI 171 A + + ++ + + M P + Sbjct: 105 YGAACDRNQASIVFDVARQMVEMSP----------------ALMRRSKIRSAGKRIINYR 148 Query: 172 TCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTELNPNRFWIMTSNT 230 Y +T H + + DE P+ + + + + + + Sbjct: 149 NAGFYQVLSAETG-TKHGLNVSGLVFDEIHAQPNRKLYDVLTKGSGDAREQPLFFIITTA 207 Query: 231 RRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQ 290 + D + + + + +++ + P Sbjct: 208 GNDKNSICYELHTKALDLMAGRK--KDATFYPVVYGLKPEEDWTDEANWYKA-----NPS 260 Query: 291 QEVNNFIPHNYIEEAMSREAIDDLYAPL 318 I + + EA + + Sbjct: 261 LGHT--IQIDRVREAYRTAVENPAEENV 286 >gi|116205519|ref|XP_001228570.1| hypothetical protein CHGG_10643 [Chaetomium globosum CBS 148.51] gi|88176771|gb|EAQ84239.1| hypothetical protein CHGG_10643 [Chaetomium globosum CBS 148.51] Length = 1339 Score = 36.1 bits (81), Expect = 8.0, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 34/124 (27%), Gaps = 6/124 (4%) Query: 33 MRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTT 92 W K PL + Q + + V H + N P + I G G GK+ Sbjct: 896 YVITTW--KRCPLAARDTLNTQQRQVYDTVMRHYRAKNENRQPPPLRLQIDGGGGTGKSY 953 Query: 93 LNAWMMLWL-ISTRPGMSIICI---ANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSL 148 + + L + I A + + L + ++ + Sbjct: 954 MVKVISSHLQAEAASYGRVSPIVRAAPTGVASNQIGGQTLHSLLRLPVDGNYRSLSETPT 1013 Query: 149 HPSG 152 + Sbjct: 1014 TLNA 1017 >gi|50425355|ref|XP_461271.1| DEHA2F21208p [Debaryomyces hansenii CBS767] gi|49656940|emb|CAG89662.1| DEHA2F21208p [Debaryomyces hansenii] Length = 1046 Score = 36.1 bits (81), Expect = 8.1, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 38/125 (30%), Gaps = 10/125 (8%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 A++AGRG GK+ + +S +I + S LK L+ V K L + Sbjct: 279 VALTAGRGRGKSAALGIAIAAAVSHGY-SNIFVTSPSPENLKT-LFEFVFKGFDALGYTE 336 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + ++ + + V DE Sbjct: 337 HMDYDIIQSTNPSFNKAIVRVDIKRGHRQTIQYISPNDNHVLGQAE--------LVIIDE 388 Query: 200 ASGTP 204 A+ P Sbjct: 389 AAAIP 393 >gi|317132776|ref|YP_004092090.1| Terminase [Ethanoligenens harbinense YUAN-3] gi|315470755|gb|ADU27359.1| Terminase [Ethanoligenens harbinense YUAN-3] Length = 535 Score = 36.1 bits (81), Expect = 8.3, Method: Composition-based stats. Identities = 39/330 (11%), Positives = 84/330 (25%), Gaps = 57/330 (17%) Query: 41 KGKPLEHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLW 100 KG + WQ + + + N T + + + GK+ L A + L Sbjct: 40 KGTWAGKPFELIDWQEQIVRDLFGVIKENGYRQFNTAY---VEIPKKQGKSELAAAIALL 96 Query: 101 LISTRPGMS--IICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELL 158 L + A Q K ++ + P +LS Sbjct: 97 LTCGDNEERAEVYGCAADRNQAK-IVFDVAVDMVRFCP--------ALSKRVKI------ 141 Query: 159 EQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPD-IINKSILGFFTE 217 + + + ++ + H + V DE P+ + + + Sbjct: 142 ---LESQKRLEYLPTHSFYQVLSADVANKHGFNTHGVIFDELHTQPNRKLFDVMTKGSGD 198 Query: 218 LNPNRFWIMTSNT-RRLNGWFYDIFNIPLE---------DWKRYQIDTRTVEGIDSGFHE 267 + + + + Y+ L+ + E Sbjct: 199 ARMQPLFFLITTAGNDTHSICYEQHEKALDIMSGRKHDPTFYPVIFGADESEDWTDPQVW 258 Query: 268 --------------------GIISRYGLDSDVARIEILGQFPQQEVNNFIPHNYIEEAMS 307 + + + R L Q+ +Q V ++P + + Sbjct: 259 KKANPSLGITVGIDKVKAACESAKQNPGEENSFRQLRLNQWVKQSV-RWMPMDKWDACAF 317 Query: 308 REAIDDLYAPLIM-GCDIAGEGGDKTVVVF 336 D+L + G D++ D T V Sbjct: 318 PVNEDELEGRVCYGGLDLSST-TDITAFVL 346 >gi|261493462|ref|ZP_05989985.1| hypothetical protein COK_1868 [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495339|ref|ZP_05991790.1| hypothetical protein COI_1114 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309016|gb|EEY10268.1| hypothetical protein COI_1114 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310865|gb|EEY12045.1| hypothetical protein COK_1868 [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 541 Score = 36.1 bits (81), Expect = 8.3, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 57/165 (34%), Gaps = 19/165 (11%) Query: 23 ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSN---VNNSNPTIFK 79 + V F+ FV +F PH + E + + N + + Sbjct: 44 DPVHGFEYFVQAYF--------------PHYVRSEHKSQLHHYLFENLPLSVSDLSKSVR 89 Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA-NSETQLKNTLWAEVSKWLSMLPHR 138 AI+A RG K+T+ + R I IA +++ Q + L A + S R Sbjct: 90 QAIAAPRGEAKSTICTQLFPLWCLVRDLKRYIIIAMDTKEQAYSMLEAIKVEIESNPRLR 149 Query: 139 HWF-EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182 F E+ + +G +Q + + R + RPD Sbjct: 150 IDFPEVAQGKVWRAGVIMTAKKQKVEAVGAGQKLRGRRHGAYRPD 194 >gi|319757813|gb|ADV69755.1| hypothetical protein SSUJS14_0664 [Streptococcus suis JS14] Length = 530 Score = 36.1 bits (81), Expect = 8.3, Method: Composition-based stats. Identities = 38/316 (12%), Positives = 78/316 (24%), Gaps = 53/316 (16%) Query: 53 RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIIC 112 WQ + + + + N T + I + GK+ L A + L+L+ Sbjct: 48 PWQEQIVRDLFGIVKEDGNRQFLTAY---IEIPKKNGKSELAAAIALYLLYADNEA---- 100 Query: 113 IANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTIT 172 A + A + F++ + S + + Sbjct: 101 SAEVYGAACDRNQASIV-----------FDVAKQMVQMSRPLEKRSKIMGATKRIVNYTN 149 Query: 173 CRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNT-- 230 Y +T H + + DE P+ +L + + T Sbjct: 150 AGFYQVLSAETG-TKHGLNVSGLVFDEIHAQPNRHLYDVLTKGSGDAREQPLFFIITTAG 208 Query: 231 RRLNGWFYDIFNIP----------------------LEDW----KRYQIDTRTVEGIDSG 264 N Y++ +DW + + I Sbjct: 209 TDRNSICYELHTKALDILNGRKKDTSFYPVVYGLSDEDDWNDEANWLKANPSLGHTIGID 268 Query: 265 FHEGIISRYGLDS---DVARIEILGQFPQQEVNNFIPHNYIEEAMS-REAIDDLYAPLIM 320 + + +V + L + V +IP + + + Sbjct: 269 RVREAYQQALDNPAEENVFKQLRLNMWTSSSV-AWIPEHVYAKGNDPIQYESLKGRSCYA 327 Query: 321 GCDIAGEGGDKTVVVF 336 G D++ D T V Sbjct: 328 GLDLSST-SDITAFVL 342 >gi|50546857|ref|XP_500898.1| YALI0B14751p [Yarrowia lipolytica] gi|49646764|emb|CAG83149.1| YALI0B14751p [Yarrowia lipolytica] Length = 1023 Score = 36.1 bits (81), Expect = 8.3, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 37/125 (29%), Gaps = 10/125 (8%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 A++AGRG GK+ + + +I + S LK L+ + K L + Sbjct: 280 VALTAGRGRGKSAALGVAIAAAVGQGY-SNIFITSPSPENLKT-LFEFIFKGFDALGYEE 337 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + ++ ++ + V DE Sbjct: 338 HVDYDIQQSTNPAFNKAIVRVNIFKSHRQTIQYIVPGDSHVLGQAE--------LVVIDE 389 Query: 200 ASGTP 204 A+ P Sbjct: 390 AAAIP 394 >gi|229589634|ref|YP_002871753.1| putative ATP-binding protein [Pseudomonas fluorescens SBW25] gi|229361500|emb|CAY48376.1| putative ATP-binding protein [Pseudomonas fluorescens SBW25] Length = 663 Score = 36.1 bits (81), Expect = 8.5, Method: Composition-based stats. Identities = 20/163 (12%), Positives = 51/163 (31%), Gaps = 11/163 (6%) Query: 45 LEHFSQPH-RWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLIS 103 L +F P W + + + + + ++ G GKT + A L Sbjct: 186 LRYFLDPQQEWASKLDLDLPDEQTEMAGDFSVRLIN-GVA---GSGKTLIAASRAYILAR 241 Query: 104 TRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMG 163 P ++ + ++ +K+ + ++ M +LS W + L ++++ Sbjct: 242 KFPDQQVLMLIHNVPVVKDLKHRLQRVYGE--IPKNLTIMTALSWISRQWRS-LFKETLK 298 Query: 164 IDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + + + + + DE + D Sbjct: 299 MPKFTTEAIGLIQHFRDTEYRELKPDNNQLL---DEFNFINDN 338 >gi|227504519|ref|ZP_03934568.1| CRISPR-associated helicase Cas3 family protein protein [Corynebacterium striatum ATCC 6940] gi|227198839|gb|EEI78887.1| CRISPR-associated helicase Cas3 family protein protein [Corynebacterium striatum ATCC 6940] Length = 792 Score = 36.1 bits (81), Expect = 8.5, Method: Composition-based stats. Identities = 39/332 (11%), Positives = 77/332 (23%), Gaps = 37/332 (11%) Query: 8 DQKLEQELHEML--------MHAE--CVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLE 57 D + EQ + + L +A + F W P W Sbjct: 108 DCEQEQRVQDGLASIGFAGLWNASKTMKPDVAEYFAAAFGW------------PDEWDPR 155 Query: 58 FMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSE 117 ++ + ++ I A G GKT ++ A + Sbjct: 156 PIQQRAFALARGSDGASLH----IIEASTGSGKTEAALAAAHAYAEKHGCHGVVFAAPTM 211 Query: 118 TQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYS 177 N L+ V +W + L+ + E + S + + Sbjct: 212 ATA-NGLFNRVIQWAQNVVPAGDTTAAYLAHSMNSLVKEYQRLRVKGVSTDTSGNGSVTA 270 Query: 178 EERPDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWF 237 E + ++ D + +S L ++ Sbjct: 271 MEWFASPKKGLLSNFAVSTVD---QVLMMALQSRHNMLRHLGLAGKVVII-----DEVHA 322 Query: 238 YDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFI 297 YD F + + V I + + L + + Sbjct: 323 YDSFTSAYLESTLKWLAWYEVPVILLSATLPVDKKESLVQAYRSVLGEEDWESVSDG--Y 380 Query: 298 PHNYIEEAMSREAIDDLYAPLIMGCDIAGEGG 329 P I +A P + D++ G Sbjct: 381 PLLTIADANGVREESLDIGPNEIHADVSVIGD 412 >gi|255282163|ref|ZP_05346718.1| domain protein, SNF2 family [Bryantella formatexigens DSM 14469] gi|255267111|gb|EET60316.1| domain protein, SNF2 family [Bryantella formatexigens DSM 14469] Length = 454 Score = 36.1 bits (81), Expect = 8.8, Method: Composition-based stats. Identities = 18/165 (10%), Positives = 42/165 (25%), Gaps = 7/165 (4%) Query: 87 GIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSL 146 G GKT M +++ IA + ++W + + + + Sbjct: 20 GCGKTLTAIATMGAAYEMGAIKTVLIIAPTSVC---SVWPKEFDEYADFKYNVAVLLGDK 76 Query: 147 SLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDEASGTPDI 206 + + T+ E + + H + DE+ + Sbjct: 77 QKRLAALRSLAAFP-FEALRVAVINYESTWREGIFEALLDWH---PDMIICDESQRIKEP 132 Query: 207 INKSILGFFTELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRY 251 K + ++ ++ S T N D + Sbjct: 133 KAKQSRAMHELGDAAKYKLILSGTPIQNNAIDLYSQYRFLDPTVF 177 >gi|302851336|ref|XP_002957192.1| hypothetical protein VOLCADRAFT_98273 [Volvox carteri f. nagariensis] gi|300257442|gb|EFJ41690.1| hypothetical protein VOLCADRAFT_98273 [Volvox carteri f. nagariensis] Length = 1484 Score = 36.1 bits (81), Expect = 8.9, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 36/128 (28%), Gaps = 7/128 (5%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 A++A RG GK+ + ++ +I A S L+ R Sbjct: 283 VALTASRGRGKSAALGLAIAGALALGY-SNIFVTAPSPENLRTLFEFVFK---HPYSTRK 338 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHG---MAVF 196 + + SL Y + + + + H+ + Sbjct: 339 YQGLDSLEYKEHIDYDLVESTNPSFGKAIVRVNVFRSHRQTVQYIQPQHHAKLAQAELLV 398 Query: 197 NDEASGTP 204 DEA+ P Sbjct: 399 IDEAAAIP 406 >gi|160873099|ref|YP_001557104.1| P-type conjugative transfer ATPase TrbB [Shewanella baltica OS195] gi|160858621|gb|ABX51844.1| P-type conjugative transfer ATPase TrbB [Shewanella baltica OS195] Length = 310 Score = 36.1 bits (81), Expect = 8.9, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 17/38 (44%) Query: 79 KCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANS 116 I G G GKTTL ++ ++ I+ + ++ Sbjct: 140 NILIVGGTGSGKTTLANALIDSMVLHNKDERIVIMEDT 177 >gi|71409165|ref|XP_806942.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70870830|gb|EAN85091.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 1043 Score = 36.1 bits (81), Expect = 8.9, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 10/125 (8%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 C ++AGRG GK+ ++ +I C A S L T + V + L L + Sbjct: 305 CVVTAGRGRGKSAALGLAAAGALAQGY-SNIFCTAPSPENL-QTFFEFVIRGLKELGYTE 362 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 E +++ + ++ ++ + + T + S F DE Sbjct: 363 RTEFEAMQSTNIEFSKCIVRINLF---REHRQTVQYISPHDASKFAQA-----ELAIIDE 414 Query: 200 ASGTP 204 A+ P Sbjct: 415 AAAIP 419 >gi|71657697|ref|XP_817360.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70882546|gb|EAN95509.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 1043 Score = 36.1 bits (81), Expect = 9.0, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 10/125 (8%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 C ++AGRG GK+ ++ +I C A S L T + V + L L + Sbjct: 305 CVVTAGRGRGKSAALGLAAAGALAQGY-SNIFCTAPSPENL-QTFFEFVIRGLKELGYTE 362 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 E +++ + ++ ++ + + T + S F DE Sbjct: 363 RTEFEAMQSTNIEFSKCIVRINLF---REHRQTVQYISPHDASKFAQA-----ELAIIDE 414 Query: 200 ASGTP 204 A+ P Sbjct: 415 AAAIP 419 >gi|302309556|ref|NP_987012.2| AGR346Cp [Ashbya gossypii ATCC 10895] gi|299788414|gb|AAS54836.2| AGR346Cp [Ashbya gossypii ATCC 10895] Length = 1058 Score = 36.1 bits (81), Expect = 9.7, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 10/125 (8%) Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQLKNTLWAEVSKWLSMLPHRH 139 A++AGRG GK+ + +S ++ + S LK L+ + K L ++ Sbjct: 292 VALTAGRGRGKSAALGIALAAAVSHGY-SNMFVTSPSPENLKT-LFEFIFKGFDALGYQE 349 Query: 140 WFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPDTFVGPHNTHGMAVFNDE 199 + + + ++ + + V DE Sbjct: 350 HIDYDIIQSTNPAFNKAIVRVDIKRAHRQTIQYILPGDSHVLGQAE--------LVVIDE 401 Query: 200 ASGTP 204 A+ P Sbjct: 402 AAAIP 406 >gi|254361337|ref|ZP_04977479.1| hypothetical protein MHA_0927 [Mannheimia haemolytica PHL213] gi|153092838|gb|EDN73875.1| hypothetical protein MHA_0927 [Mannheimia haemolytica PHL213] Length = 541 Score = 36.1 bits (81), Expect = 9.7, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 57/165 (34%), Gaps = 19/165 (11%) Query: 23 ECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFMEAVDVHCHSN---VNNSNPTIFK 79 + V F+ FV +F PH + E + + N + + Sbjct: 44 DPVHGFEYFVQAYF--------------PHYVRSEHKSQLHHYLFENLPLSVSDLSKSVR 89 Query: 80 CAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIA-NSETQLKNTLWAEVSKWLSMLPHR 138 AI+A RG K+T+ + R I IA +++ Q + L A + S R Sbjct: 90 QAIAAPRGEAKSTICTQLFPLWCLVRDLKRYIIIAMDTKEQAYSMLEAIKVEIESNPRLR 149 Query: 139 HWF-EMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEERPD 182 F E+ + +G +Q + + R + RPD Sbjct: 150 IDFPEVAQGKVWRAGVIMTAKKQKVEAVGAGQKLRGRRHGAYRPD 194 >gi|242007312|ref|XP_002424485.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus corporis] gi|212507903|gb|EEB11747.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus corporis] Length = 669 Score = 36.1 bits (81), Expect = 9.8, Method: Composition-based stats. Identities = 24/240 (10%), Positives = 53/240 (22%), Gaps = 28/240 (11%) Query: 46 EHFSQPHRWQLEFMEAVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTR 105 +FS P Q A+ V A G GKT +L + + Sbjct: 173 MNFSHPTPIQC---AAIPVALLGRDICG---------CAATGTGKTAAYMLPILERLLYK 220 Query: 106 PGM-----SIICIANSETQLKNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQ 160 P ++ + + + + + ++ + + ++ Q Sbjct: 221 PQGSLSITRVLVLVPTRELGVQVIQ----------VAKQLSKFTTIEIGLAVGGLDVKVQ 270 Query: 161 SMGIDSKHYTITCRTYSEERP-DTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELN 219 + + + +G + DEA D + Sbjct: 271 EAFLRKQPDIVIATPGRLIDHLKNSLGFSLDSIEILVLDEADRMLDEYFAEQMKEIVRQC 330 Query: 220 PNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDV 279 M + K + ++V I D + Sbjct: 331 SRTRQTMLFSATMTTAVEDLASVSLSNPVKIFVDSNQSVTNNLRQEFIRIRKGREGDKEA 390 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.305 0.111 0.282 Lambda K H 0.267 0.0342 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,792,388,956 Number of Sequences: 14124377 Number of extensions: 48835164 Number of successful extensions: 334500 Number of sequences better than 10.0: 4428 Number of HSP's better than 10.0 without gapping: 631 Number of HSP's successfully gapped in prelim test: 3797 Number of HSP's that attempted gapping in prelim test: 331766 Number of HSP's gapped (non-prelim): 5030 length of query: 367 length of database: 4,842,793,630 effective HSP length: 140 effective length of query: 227 effective length of database: 2,865,380,850 effective search space: 650441452950 effective search space used: 650441452950 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 81 (36.1 bits)