HHsearch alignment of GI: 254781188 and MMDB domain: 1jko_C_

>1jko_C (C:) HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic}
Probab=96.98  E-value=0.00077  Score=46.42  Aligned_cols=46  Identities=17%  Similarity=0.223  Sum_probs=41.2

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCH
Q ss_conf             246567644589999999999858923899961588988889999983398
Q gi|254781188|r   12 VRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDL   62 (185)
Q Consensus        12 ~R~Kk~~i~Ys~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kde   62 (185)
                      ||.++    +|++-+..+...+++|+|+..||+..|+ |.+|||+|+....
T Consensus         1 GRp~k----lt~eq~~~a~~l~~~G~s~~~iA~~~gV-Sr~TiYr~l~~~~   46 (52)
T 1jko_C            1 GRPRA----INKHEQEQISRLLEKGHPRQQLAIIFGI-GVSTLYRYFPASS   46 (52)
T ss_dssp             CCCCS----SCTTHHHHHHHHHHTTCCHHHHHHTTSC-CHHHHHHHSCTTC
T ss_pred             CCCCC----CCHHHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHCCCHH
T ss_conf             98986----9999999999999879989999999897-9999999845214