HHsearch alignment of GI: 254781188 and MMDB domain: 1jko_C_
>1jko_C (C:) HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic}
Probab=96.98 E-value=0.00077 Score=46.42 Aligned_cols=46 Identities=17% Similarity=0.223 Sum_probs=41.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCH
Q ss_conf 246567644589999999999858923899961588988889999983398
Q gi|254781188|r 12 VRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDL 62 (185)
Q Consensus 12 ~R~Kk~~i~Ys~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kde 62 (185)
||.++ +|++-+..+...+++|+|+..||+..|+ |.+|||+|+....
T Consensus 1 GRp~k----lt~eq~~~a~~l~~~G~s~~~iA~~~gV-Sr~TiYr~l~~~~ 46 (52)
T 1jko_C 1 GRPRA----INKHEQEQISRLLEKGHPRQQLAIIFGI-GVSTLYRYFPASS 46 (52)
T ss_dssp CCCCS----SCTTHHHHHHHHHHTTCCHHHHHHTTSC-CHHHHHHHSCTTC
T ss_pred CCCCC----CCHHHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHCCCHH
T ss_conf 98986----9999999999999879989999999897-9999999845214