HHsearch alignment of GI: 254781188 and MMDB domain: 1pdn_C_17-69

>1pdn_C (C:17-69) Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster}
Probab=94.74  E-value=0.033  Score=35.46  Aligned_cols=41  Identities=10%  Similarity=0.131  Sum_probs=38.4

Q ss_pred             CCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCH
Q ss_conf             589999999999858923899961588988889999983398
Q gi|254781188|r   21 YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDL   62 (185)
Q Consensus        21 Ys~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kde   62 (185)
                      |+-++-..|++.+.+|.|.+++++..++ |.+|+++|++...
T Consensus         2 yS~DlR~riv~~~~~G~s~~~aA~~f~V-S~~tv~k~~~r~~   42 (53)
T 1pdn_C            2 LPNNIRLKIVEMAADGIRPCVISRQLRV-SHGCVSKILNRYQ   42 (53)
T ss_dssp             CCHHHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHHHH
T ss_conf             9899999999999869999999998896-8999999999987