Query gi|254781188|ref|YP_003065601.1| hypothetical protein CLIBASIA_05475 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 185
No_of_seqs 92 out of 94
Neff 3.5
Searched_HMMs 23785
Date Wed Jun 1 03:05:51 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781188.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hef_A Gene 1 protein; bacteri 99.9 7.4E-26 3.1E-30 192.6 9.9 121 7-135 6-126 (143)
2 2elh_A CG11849-PA, LD40883P; s 97.0 0.00078 3.3E-08 45.3 4.7 52 15-67 17-68 (87)
3 1jko_C HIN recombinase, DNA-in 96.5 0.0018 7.7E-08 42.9 4.0 46 12-62 1-46 (52)
4 2jn6_A Protein CGL2762, transp 95.4 0.011 4.6E-07 37.7 3.7 40 20-60 5-46 (97)
5 2r0q_C Putative transposon TN5 94.7 0.027 1.1E-06 35.0 4.0 37 24-61 163-199 (209)
6 2rn7_A IS629 ORFA; helix, all 93.9 0.036 1.5E-06 34.2 3.2 41 19-60 5-53 (108)
7 1u78_A TC3 transposase, transp 93.1 0.09 3.8E-06 31.5 4.3 41 21-62 7-47 (141)
8 1hlv_A CENP-B, major centromer 92.5 0.22 9.3E-06 29.0 5.6 51 20-71 7-59 (131)
9 1gdt_A GD resolvase, protein ( 92.5 0.088 3.7E-06 31.6 3.5 32 27-59 149-180 (183)
10 1k78_A Paired box protein PAX5 92.3 0.11 4.7E-06 30.9 3.8 42 21-63 33-74 (149)
11 2k27_A Paired box protein PAX- 92.2 0.088 3.7E-06 31.6 3.2 41 21-62 26-66 (159)
12 3gzi_A Transcriptional regulat 91.4 0.39 1.6E-05 27.3 5.7 67 3-71 1-71 (218)
13 2zcx_A SCO7815, TETR-family tr 89.1 0.96 4E-05 24.7 6.2 42 24-66 30-72 (231)
14 3kz9_A SMCR; transcriptional r 88.6 0.47 2E-05 26.7 4.3 50 23-73 20-73 (206)
15 2ao9_A Phage protein; structur 87.9 0.99 4.2E-05 24.6 5.6 45 22-67 27-78 (155)
16 2hyt_A TETR-family transcripti 87.5 0.44 1.8E-05 27.0 3.6 60 25-85 20-80 (197)
17 2nx4_A Transcriptional regulat 86.9 0.91 3.8E-05 24.9 4.9 76 3-84 1-77 (194)
18 3knw_A Putative transcriptiona 86.7 0.56 2.4E-05 26.2 3.7 60 27-87 25-84 (212)
19 2hku_A A putative transcriptio 86.4 1.9 8E-05 22.7 7.0 76 4-83 3-82 (215)
20 2yve_A Transcriptional regulat 86.1 1.2 5.2E-05 24.0 5.2 69 26-95 13-82 (185)
21 1rkt_A Protein YFIR; transcrip 86.1 0.82 3.4E-05 25.2 4.3 63 1-69 1-64 (205)
22 3lwj_A Putative TETR-family tr 86.0 2 8.4E-05 22.6 8.5 65 24-89 16-84 (202)
23 3b81_A Transcriptional regulat 85.9 0.67 2.8E-05 25.7 3.8 45 24-69 15-63 (203)
24 2d6y_A Putative TETR family re 85.2 2.2 9.1E-05 22.3 6.3 43 26-69 17-60 (202)
25 3bru_A Regulatory protein, TET 84.9 1.2 5E-05 24.1 4.7 45 26-71 39-84 (222)
26 2v57_A TETR family transcripti 84.7 1.9 8.2E-05 22.6 5.7 60 23-83 17-78 (190)
27 3on4_A Transcriptional regulat 84.6 2.3 9.7E-05 22.1 6.1 56 24-83 14-73 (191)
28 1ui5_A A-factor receptor homol 84.6 2.2 9.4E-05 22.2 6.0 44 24-68 16-60 (215)
29 1pdn_C Protein (PRD paired); p 84.5 0.84 3.5E-05 25.1 3.8 42 21-63 18-59 (128)
30 2ras_A Transcriptional regulat 84.4 2.4 1E-04 22.1 6.6 33 35-68 30-62 (212)
31 3f1b_A TETR-like transcription 84.4 2.4 1E-04 22.1 7.1 57 23-83 17-77 (203)
32 2qwt_A Transcriptional regulat 83.3 2.6 0.00011 21.8 6.2 61 24-85 20-80 (196)
33 3f0c_A TETR-molecule A, transc 82.2 2.9 0.00012 21.5 6.5 46 24-70 18-64 (216)
34 2oer_A Probable transcriptiona 81.2 3.1 0.00013 21.3 10.1 50 35-85 43-92 (214)
35 1vi0_A Transcriptional regulat 79.1 3.6 0.00015 20.8 5.9 46 24-70 12-61 (206)
36 3geu_A Intercellular adhesion 78.8 3.7 0.00016 20.8 6.4 47 28-75 14-61 (189)
37 2fbq_A Probable transcriptiona 78.8 3.7 0.00016 20.8 6.0 61 24-85 14-75 (235)
38 3eup_A Transcriptional regulat 78.7 2.2 9.1E-05 22.3 4.2 36 35-71 30-65 (204)
39 2iai_A Putative transcriptiona 77.8 1.6 6.6E-05 23.2 3.2 45 24-69 37-82 (230)
40 2g7g_A RHA04620, putative tran 77.4 4.1 0.00017 20.5 6.7 42 24-67 18-59 (213)
41 3hot_A Transposable element ma 77.3 1.9 7.9E-05 22.7 3.5 41 21-61 7-53 (345)
42 2ezh_A Transposase; DNA-bindin 77.0 1.1 4.7E-05 24.2 2.3 42 20-61 7-59 (75)
43 3g1l_A Transcriptional regulat 77.0 4.2 0.00018 20.4 5.4 62 23-85 47-112 (256)
44 2g7l_A TETR-family transcripti 76.8 4.2 0.00018 20.4 6.5 65 1-67 1-69 (243)
45 2hyj_A Putative TETR-family tr 76.5 2.1 8.8E-05 22.4 3.6 58 24-85 16-77 (200)
46 2ibd_A Possible transcriptiona 76.5 4.3 0.00018 20.3 7.0 49 26-75 23-72 (204)
47 3bqz_B HTH-type transcriptiona 75.7 4.5 0.00019 20.2 7.7 45 26-71 11-56 (194)
48 2qtq_A Transcriptional regulat 75.6 4.5 0.00019 20.2 7.4 43 26-69 25-68 (213)
49 2dg8_A Putative TETR-family tr 75.4 4.6 0.00019 20.2 5.8 46 24-70 13-62 (193)
50 2oi8_A Putative regulatory pro 75.4 4.6 0.00019 20.1 5.9 67 5-74 2-74 (216)
51 2gfn_A HTH-type transcriptiona 75.3 4.6 0.00019 20.1 6.2 44 26-70 18-62 (209)
52 3npi_A TETR family regulatory 75.2 1.5 6.4E-05 23.3 2.6 45 26-71 27-72 (251)
53 3c07_A Putative TETR-family tr 74.8 4 0.00017 20.5 4.7 35 35-70 60-94 (273)
54 2rae_A Transcriptional regulat 74.8 1.4 5.8E-05 23.6 2.3 41 28-69 28-69 (207)
55 3nrg_A TETR family transcripti 74.7 1.3 5.6E-05 23.7 2.2 61 3-69 1-65 (217)
56 2zcm_A Biofilm operon icaabcd 74.1 4.9 0.00021 19.9 5.6 43 26-69 16-59 (192)
57 3mvp_A TETR/ACRR transcription 73.7 4.4 0.00019 20.3 4.6 41 28-69 37-78 (217)
58 3f6w_A XRE-family like protein 73.2 4.9 0.00021 20.0 4.8 56 32-89 23-82 (83)
59 1jhf_A LEXA repressor; LEXA SO 73.1 3.7 0.00016 20.7 4.2 38 23-60 9-49 (202)
60 3kkc_A TETR family transcripti 73.1 3.2 0.00013 21.2 3.8 56 23-86 15-74 (177)
61 2o7t_A Transcriptional regulat 72.6 5.3 0.00022 19.7 8.0 50 35-85 27-76 (199)
62 2fd5_A Transcriptional regulat 72.6 2.9 0.00012 21.5 3.5 56 24-83 14-70 (180)
63 2q24_A Putative TETR family tr 72.6 5.4 0.00023 19.7 9.1 45 24-70 22-67 (194)
64 3cwr_A Transcriptional regulat 71.6 2.9 0.00012 21.5 3.3 64 3-68 1-68 (208)
65 1sgm_A Putative HTH-type trans 70.8 5.8 0.00024 19.5 4.7 44 26-70 15-60 (191)
66 3bni_A Putative TETR-family tr 70.5 5.9 0.00025 19.4 6.5 35 35-70 62-96 (229)
67 3dcf_A Transcriptional regulat 70.3 6 0.00025 19.4 9.2 43 24-67 35-81 (218)
68 3frq_A Repressor protein MPHR( 70.2 5.1 0.00021 19.8 4.3 47 23-70 11-61 (195)
69 1mkm_A ICLR transcriptional re 69.9 5.7 0.00024 19.5 4.5 38 22-60 6-46 (249)
70 1x3u_A Transcriptional regulat 69.5 3.6 0.00015 20.9 3.4 34 26-60 21-54 (79)
71 3he0_A Transcriptional regulat 69.3 4.2 0.00018 20.4 3.7 45 24-69 15-63 (196)
72 3bjb_A Probable transcriptiona 69.3 2.8 0.00012 21.6 2.8 48 24-72 26-77 (207)
73 2g3b_A Putative TETR-family tr 68.0 5.6 0.00024 19.6 4.1 51 34-85 21-71 (208)
74 2rek_A Putative TETR-family tr 68.0 6.7 0.00028 19.1 5.8 46 24-70 23-68 (199)
75 2jpc_A SSRB; DNA binding prote 67.4 3.5 0.00015 20.9 3.0 33 27-60 4-36 (61)
76 2hxo_A Putative TETR-family tr 67.3 6.9 0.00029 19.0 5.2 45 24-69 20-68 (237)
77 3cjd_A Transcriptional regulat 67.2 6.9 0.00029 18.9 7.4 54 26-83 21-75 (198)
78 3o60_A LIN0861 protein; PSI, M 66.8 7 0.0003 18.9 8.1 33 35-68 39-71 (185)
79 3g7r_A Putative transcriptiona 65.6 7.4 0.00031 18.8 6.7 39 28-67 46-85 (221)
80 1v4r_A Transcriptional repress 65.2 4.6 0.00019 20.2 3.2 38 22-60 13-58 (102)
81 3ccy_A Putative TETR-family tr 65.0 7.6 0.00032 18.7 10.1 77 2-85 2-82 (203)
82 2oa4_A SIR5; structure, struct 65.0 7.6 0.00032 18.7 4.3 42 20-62 33-75 (101)
83 1je8_A Nitrate/nitrite respons 64.6 3.9 0.00017 20.6 2.8 36 24-60 24-59 (82)
84 2w53_A Repressor, SMet; antibi 64.3 5.6 0.00024 19.5 3.5 46 24-70 15-64 (219)
85 2rnj_A Response regulator prot 63.6 3.1 0.00013 21.3 2.1 35 25-60 33-67 (91)
86 2g7s_A Transcriptional regulat 63.0 8.3 0.00035 18.4 6.1 45 27-72 18-63 (194)
87 2xdn_A HTH-type transcriptiona 62.5 8.4 0.00036 18.4 5.5 58 25-83 19-77 (210)
88 3dpj_A Transcription regulator 62.4 8.5 0.00036 18.4 10.1 62 25-87 16-78 (194)
89 2np5_A Transcriptional regulat 61.6 8.8 0.00037 18.3 4.2 56 24-83 13-72 (203)
90 3him_A Probable transcriptiona 61.3 5 0.00021 19.9 2.9 45 24-69 20-68 (211)
91 2krf_A Transcriptional regulat 61.1 5.4 0.00023 19.7 3.0 38 21-60 13-50 (73)
92 2qco_A CMER; transcriptional r 61.0 2.1 8.8E-05 22.4 0.9 43 25-68 21-64 (210)
93 2ef8_A C.ECOT38IS, putative tr 61.0 8.8 0.00037 18.3 4.1 61 24-85 10-75 (84)
94 3by6_A Predicted transcription 60.7 8.8 0.00037 18.3 4.0 37 22-59 13-57 (126)
95 3c2b_A Transcriptional regulat 60.4 9.2 0.00039 18.1 5.8 42 24-66 22-64 (221)
96 1zk8_A Transcriptional regulat 59.7 9.4 0.0004 18.0 8.8 47 24-71 12-62 (183)
97 2o0y_A Transcriptional regulat 59.1 3.5 0.00015 21.0 1.7 38 22-60 21-61 (260)
98 2i10_A Putative TETR transcrip 58.9 9.7 0.00041 18.0 5.0 45 23-68 14-62 (202)
99 3cdl_A Transcriptional regulat 58.9 5.3 0.00022 19.7 2.6 42 26-68 18-60 (203)
100 2qib_A TETR-family transcripti 58.1 6.8 0.00029 19.0 3.1 45 24-69 17-65 (231)
101 1fse_A GERE; helix-turn-helix 57.3 6.3 0.00026 19.2 2.8 36 24-60 14-49 (74)
102 3neu_A LIN1836 protein; struct 56.9 11 0.00044 17.7 4.0 38 22-60 15-60 (125)
103 3mzy_A RNA polymerase sigma-H 56.7 7.5 0.00031 18.7 3.1 13 50-62 28-40 (164)
104 1p4w_A RCSB; solution structur 56.3 5.4 0.00023 19.7 2.3 38 21-60 35-72 (99)
105 2np3_A Putative TETR-family re 55.9 5.2 0.00022 19.8 2.2 41 26-67 39-80 (212)
106 3c57_A Two component transcrip 55.4 7.6 0.00032 18.7 3.0 35 25-60 31-65 (95)
107 3egq_A TETR family transcripti 55.1 11 0.00047 17.6 4.7 45 23-68 7-55 (170)
108 3f52_A CLP gene regulator (CLG 55.1 11 0.00047 17.6 6.4 64 21-85 25-93 (117)
109 2ezk_A Transposase; DNA-bindin 54.1 7.2 0.0003 18.9 2.6 40 24-64 37-80 (99)
110 3lhq_A Acrab operon repressor 52.5 12 0.00052 17.3 11.5 44 25-69 22-66 (220)
111 2g7u_A Transcriptional regulat 51.8 5.2 0.00022 19.8 1.6 39 22-61 12-53 (257)
112 3dew_A Transcriptional regulat 51.4 13 0.00054 17.2 9.5 45 24-69 15-60 (206)
113 3nnr_A Transcriptional regulat 51.4 9.2 0.00039 18.1 2.8 41 26-67 14-55 (228)
114 2fq4_A Transcriptional regulat 51.2 13 0.00054 17.1 3.9 42 24-66 16-61 (192)
115 1pb6_A Hypothetical transcript 50.7 13 0.00055 17.1 9.1 46 24-70 22-71 (212)
116 2obp_A Putative DNA-binding pr 50.3 6.1 0.00026 19.3 1.8 22 37-59 37-58 (96)
117 1t56_A EThr repressor; helix-t 50.1 13 0.00056 17.0 9.4 61 24-85 28-92 (216)
118 2ek5_A Predicted transcription 49.8 14 0.00057 17.0 4.6 38 22-60 6-51 (129)
119 2b5a_A C.BCLI; helix-turn-heli 49.4 14 0.00058 17.0 4.5 59 24-83 10-73 (77)
120 3g5g_A Regulatory protein; tra 49.4 14 0.00058 17.0 4.5 62 23-85 27-93 (99)
121 1umq_A Photosynthetic apparatu 48.7 12 0.00051 17.3 3.1 33 29-62 46-79 (81)
122 3ljl_A Transcriptional regulat 48.4 8.3 0.00035 18.4 2.2 39 28-67 25-64 (156)
123 2eh3_A Transcriptional regulat 48.1 14 0.0006 16.8 8.7 43 25-68 10-53 (179)
124 1z4h_A TORI, TOR inhibition pr 47.9 6.5 0.00027 19.1 1.6 22 38-60 12-33 (66)
125 1wh7_A ZF-HD homeobox family p 46.2 15 0.00065 16.6 5.7 51 11-62 14-73 (80)
126 2ia2_A Putative transcriptiona 45.9 10 0.00043 17.8 2.4 38 22-60 19-59 (265)
127 2dg7_A Putative transcriptiona 45.8 11 0.00047 17.6 2.6 41 24-65 11-55 (195)
128 3frw_A Putative Trp repressor 45.3 12 0.00052 17.3 2.7 31 28-59 50-83 (107)
129 2ijl_A AGR_C_4647P, molybdenum 45.3 9 0.00038 18.2 2.0 41 20-62 23-63 (135)
130 2q0o_A Probable transcriptiona 45.0 14 0.00058 16.9 3.0 27 102-128 175-201 (236)
131 3ni7_A Bacterial regulatory pr 44.6 16 0.00068 16.5 7.3 43 26-69 16-59 (213)
132 2guh_A Putative TETR-family tr 44.4 15 0.00064 16.7 3.1 45 23-68 42-90 (214)
133 3klo_A Transcriptional regulat 44.3 16 0.00069 16.5 3.4 31 28-59 166-196 (225)
134 3hta_A EBRA repressor; TETR fa 44.2 16 0.00069 16.4 9.1 41 29-70 40-81 (217)
135 2of7_A Putative TETR-family tr 44.2 14 0.00058 17.0 2.8 30 34-64 66-95 (260)
136 3clo_A Transcriptional regulat 44.2 15 0.00062 16.8 3.0 36 24-60 200-235 (258)
137 1rr7_A Middle operon regulator 44.0 11 0.00047 17.6 2.3 34 52-85 12-45 (129)
138 3edp_A LIN2111 protein; APC883 43.0 17 0.00072 16.3 4.4 37 23-60 12-56 (236)
139 1y0u_A Arsenical resistance op 42.9 17 0.00071 16.3 3.1 10 144-153 60-69 (96)
140 1b0n_A Protein (SINR protein); 42.1 18 0.00074 16.2 4.6 49 32-81 10-63 (111)
141 2id6_A Transcriptional regulat 41.4 18 0.00076 16.2 10.3 44 26-70 14-58 (202)
142 2pz9_A Putative regulatory pro 40.7 19 0.00078 16.1 6.8 46 23-69 33-82 (226)
143 2vke_A Tetracycline repressor 39.9 19 0.0008 16.0 6.2 41 26-67 12-53 (207)
144 3bqy_A Putative TETR family tr 39.6 19 0.00081 16.0 6.7 42 26-68 11-53 (209)
145 3jsj_A Putative TETR-family tr 39.4 19 0.00082 16.0 8.8 58 24-85 16-73 (190)
146 1utx_A CYLR2; DNA-binding prot 39.3 20 0.00082 15.9 3.2 46 31-77 9-58 (66)
147 3c3w_A Two component transcrip 38.8 20 0.00083 15.9 3.0 27 102-128 149-175 (225)
148 2f07_A YVDT; helix-turn-helix, 38.6 20 0.00084 15.9 10.7 58 23-84 13-74 (197)
149 1t33_A Putative transcriptiona 37.7 21 0.00087 15.8 8.3 45 24-69 19-63 (224)
150 3clc_A Regulatory protein; pro 37.6 21 0.00087 15.8 5.0 63 22-85 9-76 (82)
151 3b7h_A Prophage LP1 protein 11 37.5 21 0.00087 15.8 4.5 57 23-80 6-68 (78)
152 2opt_A Actii protein; helical 37.1 21 0.00089 15.7 6.7 40 26-66 15-55 (234)
153 1r69_A Repressor protein CI; g 36.9 19 0.0008 16.0 2.6 49 32-81 10-61 (69)
154 2o8x_A Probable RNA polymerase 36.7 21 0.0009 15.7 3.8 41 20-61 15-55 (70)
155 2iu5_A DHAS, hypothetical prot 36.6 10 0.00044 17.8 1.2 43 25-68 18-64 (195)
156 3crj_A Transcription regulator 36.2 22 0.00091 15.6 5.8 56 26-85 23-79 (199)
157 1bia_A BIRA bifunctional prote 35.8 22 0.00093 15.6 2.8 34 26-60 7-42 (321)
158 1wh5_A ZF-HD homeobox family p 35.4 22 0.00094 15.5 4.9 50 11-61 14-72 (80)
159 3kz3_A Repressor protein CI; f 35.3 22 0.00094 15.5 3.1 52 32-84 21-76 (80)
160 3e7q_A Transcriptional regulat 35.2 23 0.00095 15.5 9.0 45 24-69 18-66 (215)
161 3pas_A TETR family transcripti 35.0 23 0.00095 15.5 10.7 51 24-75 12-66 (195)
162 3on2_A Probable transcriptiona 34.9 23 0.00096 15.5 7.4 43 23-66 15-61 (199)
163 3lsj_A DEST; transcriptional r 34.5 23 0.00097 15.5 8.3 61 24-85 15-80 (220)
164 1zs4_A Regulatory protein CII; 34.2 23 0.00098 15.4 4.2 43 2-58 2-45 (83)
165 2ict_A Antitoxin HIGA; helix-t 34.1 23 0.00098 15.4 3.5 47 34-81 19-69 (94)
166 3kor_A Possible Trp repressor; 34.1 18 0.00076 16.2 2.1 25 29-54 68-92 (119)
167 2gen_A Probable transcriptiona 34.0 24 0.00099 15.4 11.5 41 27-68 17-58 (197)
168 3op9_A PLI0006 protein; struct 33.9 24 0.00099 15.4 4.0 60 21-81 6-70 (114)
169 3fiw_A Putative TETR-family tr 33.5 18 0.00075 16.2 2.0 45 25-70 33-78 (211)
170 2id3_A Putative transcriptiona 32.9 24 0.001 15.3 9.3 45 24-69 44-92 (225)
171 2qko_A Possible transcriptiona 32.7 22 0.00092 15.6 2.4 43 23-66 31-77 (215)
172 2vpr_A Tetracycline resistance 32.1 21 0.00087 15.8 2.2 44 25-69 12-56 (207)
173 2cfx_A HTH-type transcriptiona 32.1 25 0.0011 15.2 3.0 39 23-62 4-44 (144)
174 2di3_A Bacterial regulatory pr 32.0 23 0.00099 15.4 2.4 39 21-60 5-51 (239)
175 2hxi_A Putative transcriptiona 31.9 18 0.00075 16.2 1.8 43 24-67 33-79 (241)
176 3i53_A O-methyltransferase; CO 30.2 27 0.0011 15.0 3.0 36 52-87 130-165 (332)
177 2ewt_A BLDD, putative DNA-bind 30.1 27 0.0011 15.0 3.4 53 19-71 3-59 (71)
178 3e7l_A Transcriptional regulat 30.1 27 0.0011 15.0 3.4 33 28-61 23-56 (63)
179 1lmb_3 Protein (lambda repress 29.8 21 0.00087 15.8 1.8 53 32-85 26-82 (92)
180 2pn6_A ST1022, 150AA long hypo 29.3 28 0.0012 14.9 3.0 38 24-62 3-42 (150)
181 1adr_A P22 C2 repressor; trans 29.2 28 0.0012 14.9 3.7 48 32-80 14-65 (76)
182 3ic7_A Putative transcriptiona 29.1 16 0.00067 16.5 1.2 37 22-59 13-57 (126)
183 2r1j_L Repressor protein C2; p 29.1 28 0.0012 14.9 3.2 47 32-79 14-64 (68)
184 3bs3_A Putative DNA-binding pr 28.9 23 0.00095 15.5 1.9 44 32-76 19-66 (76)
185 3bhq_A Transcriptional regulat 28.9 29 0.0012 14.8 11.5 47 24-71 19-66 (211)
186 1jhg_A Trp operon repressor; c 28.8 25 0.0011 15.2 2.2 26 29-55 50-76 (101)
187 3mkl_A HTH-type transcriptiona 28.7 29 0.0012 14.8 5.3 99 22-127 9-108 (120)
188 2dbb_A Putative HTH-type trans 28.7 29 0.0012 14.8 3.7 39 23-62 8-48 (151)
189 3ihu_A Transcriptional regulat 28.0 29 0.0012 14.7 2.9 38 21-59 17-61 (222)
190 3kkd_A Transcriptional regulat 27.4 30 0.0013 14.7 8.5 36 34-70 53-88 (237)
191 2djp_A Hypothetical protein SB 27.1 19 0.00079 16.0 1.2 27 32-59 19-45 (77)
192 2kpj_A SOS-response transcript 27.0 31 0.0013 14.6 3.5 56 25-81 10-70 (94)
193 2wv0_A YVOA, HTH-type transcri 26.7 31 0.0013 14.6 3.4 37 23-60 13-57 (243)
194 2ofy_A Putative XRE-family tra 26.4 31 0.0013 14.6 4.3 55 28-83 19-78 (86)
195 3k2z_A LEXA repressor; winged 26.1 32 0.0013 14.5 3.3 36 22-58 7-45 (196)
196 2ia0_A Putative HTH-type trans 26.0 32 0.0013 14.5 3.1 39 22-61 15-55 (171)
197 1xsv_A Hypothetical UPF0122 pr 25.7 32 0.0014 14.5 5.4 51 21-72 26-76 (113)
198 3fbl_A Putative uncharacterize 25.6 32 0.0014 14.5 3.3 45 38-83 7-53 (82)
199 2do9_A NALP10, nacht-, LRR- an 25.5 33 0.0014 14.5 3.0 35 113-147 62-96 (115)
200 2nrk_A Hypothetical protein GR 25.4 33 0.0014 14.4 3.5 26 52-77 118-143 (173)
201 2cg4_A Regulatory protein ASNC 25.1 33 0.0014 14.4 3.4 39 21-60 5-45 (152)
202 2jj7_A Hemolysin II regulatory 24.9 33 0.0014 14.4 7.6 41 26-67 16-57 (186)
203 2hm2_Q ASC2, pyrin-only protei 24.6 34 0.0014 14.3 2.8 34 113-146 54-87 (89)
204 2fjr_A Repressor protein CI; g 24.6 34 0.0014 14.3 6.0 58 22-81 7-67 (189)
205 3hug_A RNA polymerase sigma fa 24.2 35 0.0015 14.3 3.8 40 21-61 38-77 (92)
206 2zb9_A Putative transcriptiona 24.1 35 0.0015 14.3 10.0 44 24-68 27-74 (214)
207 2xgj_A ATP-dependent RNA helic 24.0 35 0.0015 14.3 5.6 12 49-60 522-533 (1010)
208 3ke2_A Uncharacterized protein 23.8 29 0.0012 14.8 1.7 48 3-63 11-59 (117)
209 3m8j_A FOCB protein; all-alpha 22.4 37 0.0016 14.1 5.3 42 22-64 46-87 (111)
210 3eet_A Putative GNTR-family tr 22.4 37 0.0016 14.1 3.3 37 23-60 32-76 (272)
211 3omt_A Uncharacterized protein 21.9 38 0.0016 14.0 2.5 39 32-71 17-57 (73)
212 1s7o_A Hypothetical UPF0122 pr 21.9 38 0.0016 14.0 5.3 48 22-70 24-71 (113)
213 2wui_A MEXZ, transcriptional r 21.8 38 0.0016 14.0 8.1 40 26-66 20-60 (210)
214 2hsg_A Glucose-resistance amyl 21.6 39 0.0016 14.0 3.1 23 39-62 5-27 (332)
215 1g2h_A Transcriptional regulat 21.5 39 0.0016 13.9 3.1 37 21-61 21-57 (61)
216 2wus_R RODZ, putative uncharac 21.3 39 0.0016 13.9 4.6 54 31-85 15-78 (112)
217 1e0g_A Membrane-bound lytic mu 20.5 29 0.0012 14.8 1.2 25 33-58 7-31 (48)
218 3cuo_A Uncharacterized HTH-typ 20.2 41 0.0017 13.8 3.0 35 25-60 25-61 (99)
219 1mus_A TN5 transposase; hairpi 20.0 42 0.0017 13.7 3.5 31 29-61 34-67 (477)
No 1
>3hef_A Gene 1 protein; bacteriophage SF6, terminase small subunit GP1, GP1 octameric assembly, GP1 channel, DNA recognition, DNA packaging; 1.65A {Enterobacteria phage SF6}
Probab=99.93 E-value=7.4e-26 Score=192.58 Aligned_cols=121 Identities=29% Similarity=0.471 Sum_probs=105.8
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55540246567644589999999999858923899961588988889999983398999999999997379999998620
Q gi|254781188|r 7 KAKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEE 86 (185)
Q Consensus 7 ~~~Ka~R~Kk~~i~Ys~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE~ 86 (185)
+.+|.||+++ ||+|++++||++|++|.|++.||+++||||++|||+|++++++|+++|.+|++.+++.++|++++.
T Consensus 6 ~~~k~GRPtk----~t~e~~e~I~~~l~~G~sl~~i~~~~gvps~sT~~~Wl~~~~ef~e~y~~Ar~~~~~~~~~~~~~i 81 (143)
T 3hef_A 6 TEPKAGRPSD----YMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKHEDFRDKYAKATEARADSIFEEIFEI 81 (143)
T ss_dssp -------CCS----CCHHHHHHHHHHHHTTCCHHHHHTSTTCCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCC----CCHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999865----799999999999988985999987079996899999997189999999999999999999999999
Q ss_pred CCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0230056403603789979999889999987646653434203443313
Q gi|254781188|r 87 PAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKHTI 135 (185)
Q Consensus 87 ~a~~~ee~~~~~~~~~lr~~~~~~~~w~l~k~~p~~yg~rvs~e~~h~~ 135 (185)
.. ........+..+++++++++ |.|+|++|++||+++.+|++...
T Consensus 82 ~~-~~~~~~~~~~~~r~~~~~~k---w~l~kl~P~~ygdk~~~e~~g~~ 126 (143)
T 3hef_A 82 AD-NAIPDAAEVAKARLRVDTRK---WALARMNPRKYGDKVTNELVGKD 126 (143)
T ss_dssp HH-TCCSSHHHHHHHHHHHHHHH---HHHHHHSHHHHSCCEEEEEECGG
T ss_pred HH-HCCCCHHHHHHHHHHHHHHH---HHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 86-10246188888688899999---99976683013656431036789
No 2
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=96.97 E-value=0.00078 Score=45.34 Aligned_cols=52 Identities=25% Similarity=0.398 Sum_probs=44.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHH
Q ss_conf 56764458999999999985892389996158898888999998339899999
Q gi|254781188|r 15 KKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEA 67 (185)
Q Consensus 15 Kk~~i~Ys~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreq 67 (185)
|+....||+|+=-+|+.++-.|+|...|+++.|++ .+||++|++..++.+..
T Consensus 17 kr~rr~~t~e~K~~iv~~~e~G~s~~~vAre~gi~-~stl~~W~k~~~~~~~~ 68 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDGESKASVARDIGVP-ESTLRGWCKNEDKLRFM 68 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHTCCHHHHHHHHTCC-HHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCC-HHHHHHHHHHHHHHHHH
T ss_conf 98887189999999999998799999999997979-98999999999998765
No 3
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=96.55 E-value=0.0018 Score=42.86 Aligned_cols=46 Identities=17% Similarity=0.223 Sum_probs=40.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCH
Q ss_conf 246567644589999999999858923899961588988889999983398
Q gi|254781188|r 12 VRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDL 62 (185)
Q Consensus 12 ~R~Kk~~i~Ys~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kde 62 (185)
||.++ .|++-++.+-..+++|+|..+|++..|+ |.+|+|+||-.+.
T Consensus 1 GRp~k----Lt~~q~~~a~~l~~~G~s~~~iA~~~gV-sr~TlYrylp~~~ 46 (52)
T 1jko_C 1 GRPRA----INKHEQEQISRLLEKGHPRQQLAIIFGI-GVSTLYRYFPASS 46 (52)
T ss_dssp CCCCS----SCTTHHHHHHHHHHTTCCHHHHHHTTSC-CHHHHHHHSCTTC
T ss_pred CCCCC----CCHHHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHCCCHH
T ss_conf 97987----9999999999999978989999999797-9999999851304
No 4
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=95.42 E-value=0.011 Score=37.69 Aligned_cols=40 Identities=25% Similarity=0.457 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHH--CCHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 458999999999985--89238999615889888899999833
Q gi|254781188|r 20 YYSPELFAGILDQVA--NGKALGHVLRKVGMPKYSTFYRWIKK 60 (185)
Q Consensus 20 ~Ys~Eiad~Ic~rIA--~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185)
.|++|+=.++..... .|.|+..||+..|+ +.+|+++|+++
T Consensus 5 ~Ys~efK~~aV~l~~~~~g~s~~~vA~~~GI-s~~tl~~W~k~ 46 (97)
T 2jn6_A 5 TYSEEFKRDAVALYENSDGASLQQIANDLGI-NRVTLKNWIIK 46 (97)
T ss_dssp CCCHHHHHHHHHHHTTGGGSCHHHHHHHHTS-CHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHCC-CCCCCCHHHHH
T ss_conf 8999999999999998499859999999789-95744689999
No 5
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=94.68 E-value=0.027 Score=35.03 Aligned_cols=37 Identities=16% Similarity=0.477 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf 99999999985892389996158898888999998339
Q gi|254781188|r 24 ELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKD 61 (185)
Q Consensus 24 Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd 61 (185)
++...|++....|.|+++|++..|+ |.+|||+++++.
T Consensus 163 ~~v~~I~~l~~~G~s~~~IA~~l~i-s~~Tv~R~l~~~ 199 (209)
T 2r0q_C 163 VIYHRVVEMLEEGQAISKIAKEVNI-TRQTVYRIKHDN 199 (209)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHHC
T ss_conf 9999999999875999999999896-999999999977
No 6
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=93.91 E-value=0.036 Score=34.25 Aligned_cols=41 Identities=20% Similarity=0.371 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHHHHHC--------CHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 44589999999999858--------9238999615889888899999833
Q gi|254781188|r 19 IYYSPELFAGILDQVAN--------GKALGHVLRKVGMPKYSTFYRWIKK 60 (185)
Q Consensus 19 i~Ys~Eiad~Ic~rIA~--------GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185)
..|++|+=......+-+ |.++..|+.+.|++ +.|+++|+..
T Consensus 5 ~rY~~EFK~~AV~lv~e~~~~~~s~g~~~~~va~~Lgi~-~~tl~~Wv~~ 53 (108)
T 2rn7_A 5 TRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCT-PETLRVWVRQ 53 (108)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSC-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCC-HHHHHHHHHH
T ss_conf 989999999999999985434554555199999997979-9999999999
No 7
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=93.15 E-value=0.09 Score=31.55 Aligned_cols=41 Identities=15% Similarity=0.037 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCH
Q ss_conf 589999999999858923899961588988889999983398
Q gi|254781188|r 21 YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDL 62 (185)
Q Consensus 21 Ys~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kde 62 (185)
+|++.-..|+....+|.|.+.|++..|+ +.+||++|++...
T Consensus 7 lt~~~R~~I~~l~~~G~s~~~IAk~lg~-s~stV~r~lk~~~ 47 (141)
T 1u78_A 7 LSDTERAQLDVMKLLNVSLHEMSRKISR-SRHCIRVYLKDPV 47 (141)
T ss_dssp CCHHHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHHSGG
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHHHC
T ss_conf 9999999999999979999999999895-7899999999710
No 8
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=92.54 E-value=0.22 Score=28.95 Aligned_cols=51 Identities=16% Similarity=0.204 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHHHHCCH--HHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 458999999999985892--3899961588988889999983398999999999
Q gi|254781188|r 20 YYSPELFAGILDQVANGK--ALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEA 71 (185)
Q Consensus 20 ~Ys~Eiad~Ic~rIA~Ge--SLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~A 71 (185)
.||.+.--+||..+-.|. +.++|++..|+| .+|+.+|++..+++...+...
T Consensus 7 ~~t~~~K~~vi~~~~~~~~~~~~~iAk~fgv~-~sTi~~~~k~k~~~~~~~~~~ 59 (131)
T 1hlv_A 7 QLTFREKSRIIQEVEENPDLRKGEIARRFNIP-PSTLSTILKNKRAILASERKY 59 (131)
T ss_dssp CCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCC-HHHHHHHHHTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHC
T ss_conf 18999999999999977888899999998919-999999992479999999715
No 9
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=92.54 E-value=0.088 Score=31.62 Aligned_cols=32 Identities=22% Similarity=0.420 Sum_probs=12.8
Q ss_pred HHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 999999858923899961588988889999983
Q gi|254781188|r 27 AGILDQVANGKALGHVLRKVGMPKYSTFYRWIK 59 (185)
Q Consensus 27 d~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~ 59 (185)
+.|++....|.|+++|++..|+ |.+||++||+
T Consensus 149 ~~i~~l~~~g~s~~~Ia~~l~v-s~sTv~R~l~ 180 (183)
T 1gdt_A 149 DAVLNMWQQGLGASHISKTMNI-ARSTVYKVIN 180 (183)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHH
T ss_conf 9999999869999999999893-9999999987
No 10
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=92.29 E-value=0.11 Score=30.94 Aligned_cols=42 Identities=7% Similarity=0.096 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHH
Q ss_conf 5899999999998589238999615889888899999833989
Q gi|254781188|r 21 YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLK 63 (185)
Q Consensus 21 Ys~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeE 63 (185)
|+.++-..|++.+.+|.|.++|++..++ +.+||.+|+....+
T Consensus 33 Ls~dlR~rIV~~~~~G~s~r~IArrf~V-S~stV~kii~r~re 74 (149)
T 1k78_A 33 LPDVVRQRIVELAHQGVRPCDISRQLRV-SHGCVSKILGRYYE 74 (149)
T ss_dssp CCHHHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_conf 9899999999999969999999998894-99999999999998
No 11
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=92.19 E-value=0.088 Score=31.63 Aligned_cols=41 Identities=10% Similarity=0.106 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCH
Q ss_conf 589999999999858923899961588988889999983398
Q gi|254781188|r 21 YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDL 62 (185)
Q Consensus 21 Ys~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kde 62 (185)
|+.++-..|++...+|.|.+.|++..++ +.+||.+|+....
T Consensus 26 Lp~~lR~rIv~l~~~G~s~r~IArrl~V-S~stV~kil~R~r 66 (159)
T 2k27_A 26 LPEVVRQRIVDLAHQGVRPCDISRQLRV-SHGCVSKILGRYY 66 (159)
T ss_dssp SCHHHHHHHHHHHHHTCCHHHHHHHHTC-CSHHHHHHHCCSS
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHHHH
T ss_conf 9899999999999869999999998895-9999999999998
No 12
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=91.39 E-value=0.39 Score=27.32 Aligned_cols=67 Identities=7% Similarity=0.061 Sum_probs=49.2
Q ss_pred CCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 74245554024656764458999999999985----8923899961588988889999983398999999999
Q gi|254781188|r 3 NLVKKAKKAVRAKKGCIYYSPELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEA 71 (185)
Q Consensus 3 ~~~k~~~Ka~R~Kk~~i~Ys~Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~A 71 (185)
||+..+++.+|..+..-+ -..+.+.-.+.++ .|-|++.|++.-|+ |.+|||....+.+++-......
T Consensus 1 ~m~~~~~~~~R~~~~~~t-r~~Il~aA~~lf~~~G~~~~s~~~IA~~agv-s~~tlY~~F~sKe~L~~~~~~~ 71 (218)
T 3gzi_A 1 GMAEAKSRVGRPSGDTQN-RDKLILAARNLFIERPYAQVSIREIASLAGT-DPGLIRYYFGSKEKLFSTMIHE 71 (218)
T ss_dssp --------CCCCCHHHHH-HHHHHHHHHHHHHTSCCSCCCHHHHHHHHTS-CTHHHHHHHSSHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHH
T ss_conf 989999999999995799-9999999999999749141649999998791-9768887458899999999999
No 13
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=89.14 E-value=0.96 Score=24.68 Aligned_cols=42 Identities=14% Similarity=0.189 Sum_probs=32.4
Q ss_pred HHHHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHH
Q ss_conf 99999999985-89238999615889888899999833989999
Q gi|254781188|r 24 ELFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQE 66 (185)
Q Consensus 24 Eiad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfre 66 (185)
+.+..+|..-+ +|-|++.||+.-|+ |.+|||.+..+.+++-.
T Consensus 30 ~AA~~lf~~~G~~~~T~~~IA~~aGv-s~~tlY~~F~sKe~Ll~ 72 (231)
T 2zcx_A 30 DAARELGTERGIREITLTDIAATVGM-HKSALLRYFETREQIFL 72 (231)
T ss_dssp HHHHHHHHHHCSTTCCHHHHHHHHTS-CHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHH
T ss_conf 99999999749240679999999791-98899787599999999
No 14
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=88.57 E-value=0.47 Score=26.74 Aligned_cols=50 Identities=10% Similarity=0.145 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 999999999985----892389996158898888999998339899999999999
Q gi|254781188|r 23 PELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQ 73 (185)
Q Consensus 23 ~Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are 73 (185)
+++.+.-.+.+. +|-|++.||+.-|| +.+|||.+..+.+++-........
T Consensus 20 ~~Il~aA~~l~~~~G~~~~ti~~IA~~agv-s~~t~Y~yF~sKe~L~~~~~~~~~ 73 (206)
T 3kz9_A 20 QQLMEIALEVFARRGIGRGGHADIAEIAQV-SVATVFNYFPTREDLVDEVLNHVV 73 (206)
T ss_dssp HHHHHHHHHHHHHSCCSSCCHHHHHHHHTS-CHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999999999729441779999998790-998996980999999999999889
No 15
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Bacillus cereus atcc 14579} SCOP: a.4.1.17
Probab=87.88 E-value=0.99 Score=24.61 Aligned_cols=45 Identities=13% Similarity=0.322 Sum_probs=33.5
Q ss_pred CHHHHHHHH--HHHHCC-----HHHHHHHHCCCCCCHHHHHHHHHCCHHHHHH
Q ss_conf 899999999--998589-----2389996158898888999998339899999
Q gi|254781188|r 22 SPELFAGIL--DQVANG-----KALGHVLRKVGMPKYSTFYRWIKKDLKLQEA 67 (185)
Q Consensus 22 s~Eiad~Ic--~rIA~G-----eSLr~ICkd~gMPs~sTV~rWL~kdeEfreq 67 (185)
-+.-+.+.| +.|..| .|+.+|....|+ +++|+|+|-..|+.|.+-
T Consensus 27 qQr~AA~llv~nEi~~~n~g~k~T~~eiAeEvGv-sr~TLy~Wk~qnk~Fi~Y 78 (155)
T 2ao9_A 27 KQIQAAYLLVENELMESNNEEKRTQDEMANELGI-NRTTLWEWRTKNQDFIAF 78 (155)
T ss_dssp HHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTC-CHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCH-HHHHHHHHHHCCHHHHHH
T ss_conf 9999999999875434677336479999999574-699999886058779999
No 16
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=87.47 E-value=0.44 Score=26.96 Aligned_cols=60 Identities=8% Similarity=0.192 Sum_probs=37.5
Q ss_pred HHHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999985-892389996158898888999998339899999999999737999999862
Q gi|254781188|r 25 LFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85 (185)
Q Consensus 25 iad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE 85 (185)
.+..+|.+-+ .|-|++.||+.-|+ |.+|||.+..+.+++-..-.+-...+....+++++.
T Consensus 20 aa~~l~~~~G~~~~ti~~Ia~~agv-s~~t~Y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~ 80 (197)
T 2hyt_A 20 TARKVFSERGYADTSMDDLTAQASL-TRGALYHHFGDKKGLLAAVVEQIDAEMDERLQAISD 80 (197)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHHHTC-CTTHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCC-CCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999869151879999998385-924065508999999999999999998999998870
No 17
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, protein structure initiative; 1.70A {Rhodococcus SP}
Probab=86.87 E-value=0.91 Score=24.85 Aligned_cols=76 Identities=9% Similarity=0.117 Sum_probs=44.9
Q ss_pred CCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 74245554024656764458999999999985-89238999615889888899999833989999999999973799999
Q gi|254781188|r 3 NLVKKAKKAVRAKKGCIYYSPELFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAE 81 (185)
Q Consensus 3 ~~~k~~~Ka~R~Kk~~i~Ys~Eiad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laE 81 (185)
||||...+--| |..- - +.+-.++..-+ +|-|++.||+.-|+ +.+|||....+.+++-.........+......
T Consensus 1 g~Pr~~d~e~~-r~~I---l-~aa~~l~~~~G~~~~s~~~Ia~~agv-s~~t~Y~~F~sK~~L~~a~~~~~~~~~~~~~~ 74 (194)
T 2nx4_A 1 GVPKLVDHDER-RRSI---T-AAAWRLIAARGIEAANMRDIATEAGY-TNGALSHYFAGKDEILRTSYEHISEATDRRIA 74 (194)
T ss_dssp CCCHHHHHHHH-HHHH---H-HHHHHHHHHHCTTTCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHH-HHHH---H-HHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 94799999999-9999---9-99999999759141659999998790-99999430699999999999987667999999
Q ss_pred HHH
Q ss_conf 986
Q gi|254781188|r 82 ELL 84 (185)
Q Consensus 82 EIL 84 (185)
+.+
T Consensus 75 ~~~ 77 (194)
T 2nx4_A 75 EAL 77 (194)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 875
No 18
>3knw_A Putative transcriptional regulator (TETR/ACRR family); TETR-like protein, MCSG, PSI, structural genomics, protein structure initiative; 2.45A {Acinetobacter SP}
Probab=86.67 E-value=0.56 Score=26.24 Aligned_cols=60 Identities=13% Similarity=0.224 Sum_probs=39.1
Q ss_pred HHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999998589238999615889888899999833989999999999973799999986200
Q gi|254781188|r 27 AGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEEP 87 (185)
Q Consensus 27 d~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE~~ 87 (185)
+.++..=-+|-|++.||+.-|| +.+|||.+..+.+++-..............++++++..
T Consensus 25 ~l~~~~G~~~~s~~~IA~~agv-s~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~ 84 (212)
T 3knw_A 25 HLVLRKGFVGVGLQEILKTSGV-PKGSFYHYFESKEAFGCELLKHYISDYQIRLNQLWTTE 84 (212)
T ss_dssp HHHHHHCSTTCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999719463879999999790-99999888378999999999999999999999998517
No 19
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TETR family, rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=86.43 E-value=1.9 Score=22.70 Aligned_cols=76 Identities=11% Similarity=0.086 Sum_probs=47.0
Q ss_pred CCHHHHHHCCCCCCCCCCC-H---HHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 4245554024656764458-9---99999999985892389996158898888999998339899999999999737999
Q gi|254781188|r 4 LVKKAKKAVRAKKGCIYYS-P---ELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLL 79 (185)
Q Consensus 4 ~~k~~~Ka~R~Kk~~i~Ys-~---Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~l 79 (185)
|+++.++..|.++....=+ + +.+-+.|..-+.|-|++.|++.-|| +..|||....+.+++-. .+.....+.+
T Consensus 3 ~~~~~~~~~r~~r~~~~~~r~~Il~aA~~lf~e~G~~~si~~IA~~aGv-s~~tiY~hF~sK~~L~~---av~~~~~~~~ 78 (215)
T 2hku_A 3 MVPQTGRAARATRESGRQTRDALFTAATELFLEHGEGVPITQICAAAGA-HPNQVTYYYGSKERLFV---EVACAAVLRA 78 (215)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHCTTSCHHHHHHHHTC-CHHHHHHHHSSHHHHHH---HHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC-CCCHHHHHCCCHHHHHH---HHHHHHHHHH
T ss_conf 9999999999999888999999999999999986847829999998550-63348885699999999---9999999999
Q ss_pred HHHH
Q ss_conf 9998
Q gi|254781188|r 80 AEEL 83 (185)
Q Consensus 80 aEEI 83 (185)
.+.+
T Consensus 79 ~~~~ 82 (215)
T 2hku_A 79 GKRA 82 (215)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9998
No 20
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=86.10 E-value=1.2 Score=23.96 Aligned_cols=69 Identities=13% Similarity=0.130 Sum_probs=44.7
Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 999999985-8923899961588988889999983398999999999997379999998620023005640
Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELA 95 (185)
Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE~~a~~~ee~~ 95 (185)
+.++|.+-+ +|-|++.||+.-|+ +.+|||.+..+.+++-.........+....+++++..+.+..+.++
T Consensus 13 A~~l~~~~G~~~~s~~~IA~~AGv-s~~siY~yF~~K~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (185)
T 2yve_A 13 AIDYIGEYSLETLSYDSLAEATGL-SKSGLIYHFPSRHALLLGMHELLADDWDKELRDITRDPEDPLERLR 82 (185)
T ss_dssp HHHHHHHSCSTTCCHHHHHHHHCC-CHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHCSSTTSHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 999999869051779999998683-8531306689999999999999999999999998728999999999
No 21
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=86.09 E-value=0.82 Score=25.15 Aligned_cols=63 Identities=16% Similarity=0.200 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf 9874245554024656764458999999999985-89238999615889888899999833989999999
Q gi|254781188|r 1 MSNLVKKAKKAVRAKKGCIYYSPELFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYT 69 (185)
Q Consensus 1 ~s~~~k~~~Ka~R~Kk~~i~Ys~Eiad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa 69 (185)
||-++++..+.-|..+ - -+-+..+|..-+ .|-|++.||+.-|+ +.+|||++..+.+++-..+.
T Consensus 1 Ms~r~~~~~~~~~r~~-I----l~aA~~lf~~~G~~~~t~~~Ia~~agv-s~~tlY~~F~~Ke~L~~~~~ 64 (205)
T 1rkt_A 1 MSPKVTKEHKDKRQAE-I----LEAAKTVFKRKGFELTTMKDVVEESGF-SRGGVYLYFSSTEEMFRRII 64 (205)
T ss_dssp -CCTTHHHHHHHHHHH-H----HHHHHHHHHHHCSTTCCHHHHHHHHTS-CHHHHHTTCSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH-H----HHHHHHHHHHHCCCCCCHHHHHHHHCC-CCCCCCCCCCCHHHHHHHHH
T ss_conf 9589967779999999-9----999999999749151879999998689-85741157899999999999
No 22
>3lwj_A Putative TETR-family transcriptional regulator; structural genomics, joint center for structural genomics, JCSG; 2.07A {Syntrophomonas wolfei subsp}
Probab=86.03 E-value=2 Score=22.57 Aligned_cols=65 Identities=11% Similarity=0.145 Sum_probs=41.0
Q ss_pred HHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999985----8923899961588988889999983398999999999997379999998620023
Q gi|254781188|r 24 ELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPAP 89 (185)
Q Consensus 24 Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE~~a~ 89 (185)
++.+.-.+.++ +|-|++.||+.-|+ +.+|||....+.+++-....+-...+.....++.+....+
T Consensus 16 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agv-s~~t~Y~~F~~Ke~L~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (202)
T 3lwj_A 16 KILTCSLDLFIEKGYYNTSIRDIIALSEV-GTGTFYNYFVDKEDILKNLLEDFAKQIISSISEYYLVEKD 84 (202)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHCS-CHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999998709551759999998792-9999988669999999999999999877689987524999
No 23
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator of TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=85.95 E-value=0.67 Score=25.71 Aligned_cols=45 Identities=20% Similarity=0.383 Sum_probs=32.6
Q ss_pred HHHHHHHHHH---H-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf 9999999998---5-89238999615889888899999833989999999
Q gi|254781188|r 24 ELFAGILDQV---A-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYT 69 (185)
Q Consensus 24 Eiad~Ic~rI---A-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa 69 (185)
.+.+.-.+.+ + +|-|++.||+.-|+ +.+|||+...+.+++-....
T Consensus 15 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agv-s~~t~Y~yF~sK~~Ll~~~~ 63 (203)
T 3b81_A 15 ELANKIWDIFIANGYENTTLAFIINKLGI-SKGALYHYFSSKEECADAAI 63 (203)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHHTC-CHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHH
T ss_conf 99999999999729241779999999790-99999764699999999999
No 24
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1
Probab=85.24 E-value=2.2 Score=22.32 Aligned_cols=43 Identities=7% Similarity=0.105 Sum_probs=32.8
Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf 999999985-89238999615889888899999833989999999
Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYT 69 (185)
Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa 69 (185)
+-+++..-+ .|-|++.||+.-|+ +.+|||.+..+.+++-..+.
T Consensus 17 A~~l~~e~G~~~~t~~~IA~~agv-s~~tlY~~F~sKe~L~~av~ 60 (202)
T 2d6y_A 17 AVAEFARHGIAGARIDRIAAEARA-NKQLIYAYYGNKGELFASVL 60 (202)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHTC-CHHHHHHHHSSHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHH
T ss_conf 999999759040879999999790-98899688699999999999
No 25
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structure initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=84.91 E-value=1.2 Score=24.09 Aligned_cols=45 Identities=16% Similarity=0.273 Sum_probs=33.1
Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 999999985-8923899961588988889999983398999999999
Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEA 71 (185)
Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~A 71 (185)
+-.+|..-+ +|-|++.||+.-|+ +.+|||.+..+.+++-......
T Consensus 39 A~~l~~~~G~~~~si~~IA~~agv-s~~tiY~~F~sK~~L~~~~~~~ 84 (222)
T 3bru_A 39 GLEHLTEKGYSSVGVDEILKAARV-PKGSFYHYFRNKADFGLALIEA 84 (222)
T ss_dssp HHHHHHHSCTTTCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CCHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999859040779999998689-9026988569899999999999
No 26
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=84.75 E-value=1.9 Score=22.64 Aligned_cols=60 Identities=18% Similarity=0.196 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHH--CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999985--8923899961588988889999983398999999999997379999998
Q gi|254781188|r 23 PELFAGILDQVA--NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEEL 83 (185)
Q Consensus 23 ~Eiad~Ic~rIA--~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEI 83 (185)
..+.+.-...++ .+-|++.||+.-|+ +.+|||++..+.+++-....+-...+..-.++++
T Consensus 17 ~~Il~aA~~l~~~~G~~T~~~IA~~agv-s~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~ 78 (190)
T 2v57_A 17 RAILDAAMLVLADHPTAALGDIAAAAGV-GRSTVHRYYPERTDLLRALARHVHDLSNAAIERA 78 (190)
T ss_dssp HHHHHHHHHHHTTCTTCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999998699739999999890-9999977738999999999999999999999987
No 27
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=84.63 E-value=2.3 Score=22.14 Aligned_cols=56 Identities=13% Similarity=0.142 Sum_probs=37.2
Q ss_pred HHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999985----8923899961588988889999983398999999999997379999998
Q gi|254781188|r 24 ELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEEL 83 (185)
Q Consensus 24 Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEI 83 (185)
++.+.-++.++ +|-|++.||+.-|+ +.+|||......+++-. .+.....+.+.+.+
T Consensus 14 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agv-s~~t~Y~~F~~K~~L~~---~~~~~~~~~~~~~~ 73 (191)
T 3on4_A 14 RILAVAEALIQKDGYNAFSFKDIATAINI-KTASIHYHFPSKEDLGV---AVISWHTDKIAAVL 73 (191)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTC-CHHHHHHHCSSHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHCCCCHHHHHH---HHHHHHHHHHHHHH
T ss_conf 99999999999739563779999998782-94468760698999999---88999999999998
No 28
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=84.56 E-value=2.2 Score=22.22 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=33.6
Q ss_pred HHHHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHH
Q ss_conf 99999999985-8923899961588988889999983398999999
Q gi|254781188|r 24 ELFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAY 68 (185)
Q Consensus 24 Eiad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqY 68 (185)
+.+..++..-+ .|-|++.||+.-|| |.+|||++....+++-...
T Consensus 16 ~aa~~l~~~~G~~~~s~~~Ia~~agv-s~~tiY~~F~~K~~L~~~~ 60 (215)
T 1ui5_A 16 GAAADLFDRRGYESTTLSEIVAHAGV-TKGALYFHFAAKEDLAHAI 60 (215)
T ss_dssp HHHHHHHHHHCTTTCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCC-CCCHHHHHCCCHHHHHHHH
T ss_conf 99999999859151879999998687-8211876169999999999
No 29
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=84.53 E-value=0.84 Score=25.08 Aligned_cols=42 Identities=10% Similarity=0.138 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHH
Q ss_conf 5899999999998589238999615889888899999833989
Q gi|254781188|r 21 YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLK 63 (185)
Q Consensus 21 Ys~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeE 63 (185)
++.++-..|++....|.|.+.|.+..++ +.++|.+||....+
T Consensus 18 Ls~~~R~rIv~l~~~G~s~~~Iar~l~V-s~~~V~kil~r~~e 59 (128)
T 1pdn_C 18 LPNNIRLKIVEMAADGIRPCVISRQLRV-SHGCVSKILNRYQE 59 (128)
T ss_dssp CCHHHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_conf 9899999999999869999999998896-89999999999873
No 30
>2ras_A Transcriptional regulator, TETR family; YP_495839.1, predicted transcriptional regulator of TETR/ACRR family; 1.80A {Novosphingobium aromaticivorans DSM12444}
Probab=84.37 E-value=2.4 Score=22.06 Aligned_cols=33 Identities=21% Similarity=0.389 Sum_probs=28.3
Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHH
Q ss_conf 8923899961588988889999983398999999
Q gi|254781188|r 35 NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAY 68 (185)
Q Consensus 35 ~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqY 68 (185)
+|-|++.||+.-|+ +.+|||++..+.+++-...
T Consensus 30 ~~~s~~~IA~~agv-s~~t~Y~~F~sKe~L~~~~ 62 (212)
T 2ras_A 30 AGLTLSELAARAGI-SQANLSRYFETREDLMEAI 62 (212)
T ss_dssp SCCCHHHHHHHHTS-CHHHHTTTCSSHHHHHHHH
T ss_pred CCCCHHHHHHHHCC-CCCCCCCCCCCHHHHHHHH
T ss_conf 40779999998388-9454411297999999999
No 31
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.40A {Rhodococcus SP}
Probab=84.37 E-value=2.4 Score=22.06 Aligned_cols=57 Identities=14% Similarity=0.204 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999985----8923899961588988889999983398999999999997379999998
Q gi|254781188|r 23 PELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEEL 83 (185)
Q Consensus 23 ~Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEI 83 (185)
.++.+.-+..++ .|-|++.||+.-|+ +..|||.+..+.+++-.. ..+...+.+.+.+
T Consensus 17 ~~Il~aa~~l~~~~G~~~~s~~~IA~~agv-s~~t~Y~~F~~K~~Ll~~---~~~~~~~~~~~~~ 77 (203)
T 3f1b_A 17 QQMLDAAVDVFSDRGFHETSMDAIAAKAEI-SKPMLYLYYGSKDELFAA---CIQREGLRFVEAL 77 (203)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHTTS-CHHHHHHHCCSHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHH---HHHHHHHHHHHHH
T ss_conf 999999999999739352879999999890-988887881998999999---9999999999998
No 32
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=83.33 E-value=2.6 Score=21.78 Aligned_cols=61 Identities=23% Similarity=0.238 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999985892389996158898888999998339899999999999737999999862
Q gi|254781188|r 24 ELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85 (185)
Q Consensus 24 Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE 85 (185)
+.+-.+|..-+-|-|++.||+.-|+ +.+|||.+..+.+++-....+....+..-.+++++.
T Consensus 20 ~aA~~l~~~~G~~~t~~~IA~~aGv-s~~tlY~~F~sK~~L~~av~~~~~~~~~~~~~~~~~ 80 (196)
T 2qwt_A 20 EVAYDTFAAEGLGVPMDEIARRAGV-GAGTVYRHFPTKQALVVAVAEDRVRRIVDHARTLLA 80 (196)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHTTS-CHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999986978889999999694-999998784899999999999999999999988612
No 33
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii atcc 33406}
Probab=82.15 E-value=2.9 Score=21.49 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=35.4
Q ss_pred HHHHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf 99999999985-892389996158898888999998339899999999
Q gi|254781188|r 24 ELFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE 70 (185)
Q Consensus 24 Eiad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~ 70 (185)
+-+.++|..-+ +|-|++.|++.-|| +.+|||++..+.+++-....+
T Consensus 18 ~aA~~lf~~~G~~~~s~~~IA~~aGv-s~~tlY~yF~sK~~L~~a~~~ 64 (216)
T 3f0c_A 18 NAAQKRFAHYGLCKTTMNEIASDVGM-GKASLYYYFPDKETLFEAVIK 64 (216)
T ss_dssp HHHHHHHHHHCSSSCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999749030789999998598-852798757999999999899
No 34
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=81.19 E-value=3.1 Score=21.27 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=38.6
Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 892389996158898888999998339899999999999737999999862
Q gi|254781188|r 35 NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85 (185)
Q Consensus 35 ~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE 85 (185)
.|-|++.|++.-|+ +.+|||.+..+.+++-..+.+....+....++++++
T Consensus 43 ~~~t~~~Ia~~agv-s~~t~Y~~F~sK~~L~~a~~~~~~~~~~~~~~~~~~ 92 (214)
T 2oer_A 43 QRFTTARVAERAGV-SIGSLYQYFPNKAAILFRLQSDEWRRTTRLLGEILE 92 (214)
T ss_dssp CCCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 51779999999890-998999881999999999999999999999999875
No 35
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=79.12 E-value=3.6 Score=20.83 Aligned_cols=46 Identities=11% Similarity=0.312 Sum_probs=33.0
Q ss_pred HHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf 99999999985----892389996158898888999998339899999999
Q gi|254781188|r 24 ELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE 70 (185)
Q Consensus 24 Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~ 70 (185)
.+.+.-.+.++ ++-|++.||+.-|+ +.+|||..-.+.+++-.....
T Consensus 12 ~Il~aa~~lf~~~G~~~~s~~~Ia~~agv-s~~t~Y~~F~sKe~L~~~~~~ 61 (206)
T 1vi0_A 12 QIIDAAVEVIAENGYHQSQVSKIAKQAGV-ADGTIYLYFKNKEDILISLFK 61 (206)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTS-CHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHHCCHHHHHHHHHH
T ss_conf 99999999998739030679999999794-999999991872899999999
No 36
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA-binding, repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=78.81 E-value=3.7 Score=20.77 Aligned_cols=47 Identities=13% Similarity=0.256 Sum_probs=33.6
Q ss_pred HHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 9999985-89238999615889888899999833989999999999973
Q gi|254781188|r 28 GILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCR 75 (185)
Q Consensus 28 ~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~q 75 (185)
+++..-+ +|-|++.||+.-|+ +.+|||++....+++-.......-.+
T Consensus 14 ~l~~~~G~~~~si~~Ia~~agv-s~~tiY~~F~sKe~L~~~~~~~~~~~ 61 (189)
T 3geu_A 14 TLFSEKGYDGTTLDDIAKSVNI-KKASLYYHFDSKKSIYEQSVKCCFDY 61 (189)
T ss_dssp HHHHHHHHHHCCHHHHHHHTTC-CHHHHTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 9999759364869999998790-99887000898999999999999999
No 37
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=78.80 E-value=3.7 Score=20.76 Aligned_cols=61 Identities=11% Similarity=0.096 Sum_probs=41.9
Q ss_pred HHHHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999985-892389996158898888999998339899999999999737999999862
Q gi|254781188|r 24 ELFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85 (185)
Q Consensus 24 Eiad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE 85 (185)
+-+.+++.+-+ +|-|++.|++.-|+ +.+|||+.....+++-....+....+.-..+++.++
T Consensus 14 ~AA~~l~~~~G~~~~t~~~IA~~aGv-s~~~lY~yF~sK~~Ll~av~~~~~~~~~~~~~~~~~ 75 (235)
T 2fbq_A 14 DAAEQLFAEKGFAETSLRLITSKAGV-NLAAVNYHFGSKKALIQAVFSRFLGPFCASLEKELD 75 (235)
T ss_dssp HHHHHHHHHHCSTTCCHHHHHHHHTS-CHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999859040779999999793-988999985999999999999999999999999986
No 38
>3eup_A Transcriptional regulator, TETR family; structural genomics, PSI2, MCSG, protein structure initiative; 1.99A {Cytophaga hutchinsonii atcc 33406}
Probab=78.65 E-value=2.2 Score=22.32 Aligned_cols=36 Identities=11% Similarity=0.153 Sum_probs=29.7
Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 8923899961588988889999983398999999999
Q gi|254781188|r 35 NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEA 71 (185)
Q Consensus 35 ~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~A 71 (185)
+|-|++.||+.-|+ +.+|||.+..+.+++-......
T Consensus 30 ~~~t~~~Ia~~agv-s~~~iY~~F~sK~~L~~~~~~~ 65 (204)
T 3eup_A 30 AGTSLTDLTEATNL-TKGSIYGNFENKEAVAIAAFDY 65 (204)
T ss_dssp HHCCHHHHHHHHTC-CHHHHTTTSSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHH
T ss_conf 62889999999790-9999977645647999999999
No 39
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknown function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=77.76 E-value=1.6 Score=23.25 Aligned_cols=45 Identities=13% Similarity=0.304 Sum_probs=35.1
Q ss_pred HHHHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf 99999999985-89238999615889888899999833989999999
Q gi|254781188|r 24 ELFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYT 69 (185)
Q Consensus 24 Eiad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa 69 (185)
+.+-++|..-+ +|-|++.||+.-|+ +.+|||.+..+.+++-....
T Consensus 37 ~aA~~lf~~~G~~~~si~~IA~~Agv-s~~tiY~yF~sKe~L~~~v~ 82 (230)
T 2iai_A 37 SVAVQVFIERGYDGTSMEHLSKAAGI-SKSSIYHHVTGKEELLRRAV 82 (230)
T ss_dssp HHHHHHHHHHCTTTCCHHHHHHHHTS-CHHHHTTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCC-CCCHHHCCCCCHHHHHHHHH
T ss_conf 99999999859262729999998582-91015305899999999999
No 40
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structure initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=77.44 E-value=4.1 Score=20.51 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHH
Q ss_conf 99999999985892389996158898888999998339899999
Q gi|254781188|r 24 ELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEA 67 (185)
Q Consensus 24 Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreq 67 (185)
+-+..+|..-+ |-|++.||+.-|+ +..|||.+..+.+++-..
T Consensus 18 ~aA~~lf~e~G-~~S~~~IA~~aGv-s~~tlY~yF~sKe~L~~a 59 (213)
T 2g7g_A 18 EAALELVDRDG-DFRMPDLARHLNV-QVSSIYHHAKGRAAVVEL 59 (213)
T ss_dssp HHHHHHHHHHS-SCCHHHHHHHTTS-CHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHCC-CCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHH
T ss_conf 99999999829-8629999999696-877899887998999999
No 41
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, DNA binding protein/DNA complex, transferase; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=77.28 E-value=1.9 Score=22.74 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHCC----C--CCCHHHHHHHHHCC
Q ss_conf 58999999999985892389996158----8--98888999998339
Q gi|254781188|r 21 YSPELFAGILDQVANGKALGHVLRKV----G--MPKYSTFYRWIKKD 61 (185)
Q Consensus 21 Ys~Eiad~Ic~rIA~GeSLr~ICkd~----g--MPs~sTV~rWL~kd 61 (185)
+..+.-..|...+..|.|...|++.. | .+|.+||++|++..
T Consensus 7 ~~~~~R~~i~~~~~~g~~~~e~~~~l~~~~~~~~is~~TV~rw~~~~ 53 (345)
T 3hot_A 7 NKEQTRTVLIFCFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRF 53 (345)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 31889999999998599999999999987467888788999999999
No 42
>2ezh_A Transposase; DNA-binding protein, transposition; NMR {Enterobacteria phage MU} SCOP: a.4.1.2 PDB: 2ezi_A
Probab=76.98 E-value=1.1 Score=24.22 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHHHH--CCHH-------HHHHHHCCC--CCCHHHHHHHHHCC
Q ss_conf 458999999999985--8923-------899961588--98888999998339
Q gi|254781188|r 20 YYSPELFAGILDQVA--NGKA-------LGHVLRKVG--MPKYSTFYRWIKKD 61 (185)
Q Consensus 20 ~Ys~Eiad~Ic~rIA--~GeS-------Lr~ICkd~g--MPs~sTV~rWL~kd 61 (185)
++++++|+-|-..-- ..-| +...|+..| .||+.||+++++.-
T Consensus 7 ~~~~~~~~~i~~~YL~~~~ps~~~~yr~i~~~c~~~gl~~PS~~T~~rri~~l 59 (75)
T 2ezh_A 7 EFDEDAWQFLIADYLRPEKPAFRKCYERLELAAREHGWSIPSRATAFRRIQQL 59 (75)
T ss_dssp CCCHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
T ss_conf 08999999999998184589899999999999999098999899999999948
No 43
>3g1l_A Transcriptional regulatory repressor protein (TETR-family) EThr; DNA-binding, transcription regulation; HET: RF2; 1.70A {Mycobacterium tuberculosis} PDB: 3g1o_A*
Probab=76.98 E-value=4.2 Score=20.42 Aligned_cols=62 Identities=13% Similarity=0.220 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999985----892389996158898888999998339899999999999737999999862
Q gi|254781188|r 23 PELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85 (185)
Q Consensus 23 ~Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE 85 (185)
..|.+.-.+.+. ++-|++.||+.-|+ +.+|||.+....+++-....+....+.....+++++
T Consensus 47 ~~Il~AA~~l~~e~G~~~~Tl~~IA~~aGv-s~~tlY~~F~sK~~L~~av~~~~~~~~~~~~~~~~~ 112 (256)
T 3g1l_A 47 LAILATAENLLEDRPLADISVDDLAKGAGI-SRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAE 112 (256)
T ss_dssp HHHHHHHHHHTTTSCGGGCCHHHHHHHHTC-CHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999839451769999999890-999998882889999999999999999999999863
No 44
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiative, PSI, midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=76.83 E-value=4.2 Score=20.39 Aligned_cols=65 Identities=9% Similarity=0.171 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHCCCCCCCCCCCHHHHHH---HHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHH
Q ss_conf 9874245554024656764458999999---999985-892389996158898888999998339899999
Q gi|254781188|r 1 MSNLVKKAKKAVRAKKGCIYYSPELFAG---ILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEA 67 (185)
Q Consensus 1 ~s~~~k~~~Ka~R~Kk~~i~Ys~Eiad~---Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreq 67 (185)
|+.+..-+++..|..+...+ -+.|.+. +|..-+ +|-|++.|++.-|| +.+|||++....+++-..
T Consensus 1 m~~~~~p~~~r~r~~~~~~t-R~~Il~AA~~lf~e~G~~~~T~~~IA~~aGv-s~~tlY~hF~sKe~L~~a 69 (243)
T 2g7l_A 1 MAARRAPISRRDRPAKPALS-RRWIVDTAVALMRAEGLEKVTMRRLAQELDT-GPASLYVYVANTAELHAA 69 (243)
T ss_dssp ---------------CCCCC-HHHHHHHHHHHHHHHCSSSCCHHHHHHHTTS-CHHHHTTTCCSHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC-CCCCCHHCCCCHHHHHHH
T ss_conf 98999999989999980759-9999999999999809430789999998689-955320039098999999
No 45
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, protein structure initiative; 2.19A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1
Probab=76.55 E-value=2.1 Score=22.43 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=36.5
Q ss_pred HHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999985----892389996158898888999998339899999999999737999999862
Q gi|254781188|r 24 ELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85 (185)
Q Consensus 24 Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE 85 (185)
.+.+.-.+.++ +|-|++.||+.-|+ +.+|||.+..+.+++-.. +.+...+-+.+.+.+
T Consensus 16 ~Il~aA~~l~~~~G~~~~t~~~IA~~aGv-s~~~ly~~F~sK~~L~~a---~~~~~~~~~~~~~~~ 77 (200)
T 2hyj_A 16 RILGRAAEIASEEGLDGITIGRLAEELEM-SKSGVHKHFGTKETLQIS---TLDKAFVDFWHRVVE 77 (200)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTC-CHHHHHTTCSSHHHHHHH---HHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHH---HHHHHHHHHHHHHHH
T ss_conf 99999999999739151889999998781-978895544899999999---999999999999999
No 46
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. RHA1, structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=76.53 E-value=4.3 Score=20.34 Aligned_cols=49 Identities=6% Similarity=0.162 Sum_probs=35.7
Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 999999985-89238999615889888899999833989999999999973
Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCR 75 (185)
Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~q 75 (185)
+-++|..-+ .|-|++.||+.-|+ +.+|||....+.+++-.........+
T Consensus 23 a~~l~~~~G~~~~t~~~Ia~~agv-s~~t~Y~~F~~K~~L~~~~~~~~~~~ 72 (204)
T 2ibd_A 23 AATLFAERGLRATTVRDIADAAGI-LSGSLYHHFDSKESMVDEILRGFLDD 72 (204)
T ss_dssp HHHHHHHHCSTTCCHHHHHHHTTS-CHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CCCHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 999999749240779999998688-92659998299999999999999999
No 47
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* 1rpw_A* ...
Probab=75.70 E-value=4.5 Score=20.20 Aligned_cols=45 Identities=11% Similarity=0.120 Sum_probs=33.2
Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 999999985-8923899961588988889999983398999999999
Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEA 71 (185)
Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~A 71 (185)
+.+++..=+ .|-|++.||+.-|+ +.+|||....+.+++-..+...
T Consensus 11 A~~l~~~~G~~~~ti~~Ia~~agv-s~~t~Y~~F~sK~~L~~~~~~~ 56 (194)
T 3bqz_B 11 AKELFIKNGYNATTTGEIVKLSES-SKGNLYYHFKTKENLFLEILNI 56 (194)
T ss_dssp HHHHHHHHTTTTCCHHHHHHHTTC-CHHHHHHHTSSHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999769330679999999790-9998814378999999999999
No 48
>2qtq_A Transcriptional regulator, TETR family; YP_496351.1, predicted DNA-binding transcriptional regulator; HET: MSE; 1.85A {Novosphingobium aromaticivorans DSM12444} PDB: 2rha_A*
Probab=75.55 E-value=4.5 Score=20.17 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=32.4
Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf 999999985-89238999615889888899999833989999999
Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYT 69 (185)
Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa 69 (185)
+..+|..-+ .|-|++.||+.-|| +.+|||.+..+.+++-....
T Consensus 25 A~~lf~~~G~~~~si~~Ia~~agv-s~~tiy~yF~sK~~L~~~~~ 68 (213)
T 2qtq_A 25 ASNIMREGDVVDISLSELSLRSGL-NSALVKYYFGNKAGLLKALL 68 (213)
T ss_dssp HHHHHHHHTSSCCCHHHHHHHHCC-CHHHHHHHHSSHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHH
T ss_conf 999999739341789999999794-99999998798999999899
No 49
>2dg8_A Putative TETR-family transcriptional regulatory protein; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor A3}
Probab=75.44 E-value=4.6 Score=20.15 Aligned_cols=46 Identities=13% Similarity=0.156 Sum_probs=33.3
Q ss_pred HHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf 99999999985----892389996158898888999998339899999999
Q gi|254781188|r 24 ELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE 70 (185)
Q Consensus 24 Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~ 70 (185)
.+.+.-.+.+. +|-|++.|++.-|+ +.+|||+...+.+++-..-.+
T Consensus 13 ~Il~aA~~l~~e~G~~~~si~~Ia~~agv-s~~t~Y~~F~sKe~Ll~~v~~ 62 (193)
T 2dg8_A 13 RILAATLDLIAEEGIARVSHRRIAQRAGV-PLGSMTYHFTGIEQLLREAFG 62 (193)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTS-CTHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999999759040769999999890-999998780899999999999
No 50
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=75.38 E-value=4.6 Score=20.14 Aligned_cols=67 Identities=18% Similarity=0.302 Sum_probs=40.3
Q ss_pred CHHHHHHCCCCCC-CCCCCHHHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHH-HHHHHHHHH
Q ss_conf 2455540246567-64458999999999985----8923899961588988889999983398999-999999997
Q gi|254781188|r 5 VKKAKKAVRAKKG-CIYYSPELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQ-EAYTEALQC 74 (185)
Q Consensus 5 ~k~~~Ka~R~Kk~-~i~Ys~Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfr-eqYa~Are~ 74 (185)
++.+..+-|.++. .+ -..+.+.-++.++ +|-|++.|++.-|+ +.+|||.+..+.+++- .-+.+....
T Consensus 2 ~~~~~~~pr~~~~~~~--R~~Il~aA~~l~~~~G~~~~t~~~IA~~aGv-s~~~lY~~F~sK~~L~~al~~~~~~~ 74 (216)
T 2oi8_A 2 PEARTSTPRERYRTQV--RAEIKDHAWEQIATAGASALSLNAIAKRMGM-SGPALYRYFDGRDELITELIRDAYRS 74 (216)
T ss_dssp ------CCSSCCHHHH--HHHHHHHHHHHHHHHCTTSCCHHHHHHHTTC-CHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHH--HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 6899999863227999--9999999999999709653889999999797-98899988799999999999999999
No 51
>2gfn_A HTH-type transcriptional regulator PKSA related protein; transcriptional regulator TETR, PSI-2, regulatory protein, structural genomics; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=75.28 E-value=4.6 Score=20.13 Aligned_cols=44 Identities=9% Similarity=0.095 Sum_probs=32.1
Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf 999999985-892389996158898888999998339899999999
Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE 70 (185)
Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~ 70 (185)
+..+|..-+ +|-|++.||+.-|+ +.+|||.+..+.+++-.....
T Consensus 18 a~~l~~~~G~~~~t~~~Ia~~agv-s~~t~Y~~F~~K~~L~~~v~~ 62 (209)
T 2gfn_A 18 VLALIAREGISAVTTRAVAEESGW-STGVLNHYFGSRHELLLAALR 62 (209)
T ss_dssp HHHHHHHHCGGGCCHHHHHHHHSS-CHHHHHHHTSSHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999729130769999999790-999997434899999999999
No 52
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=75.19 E-value=1.5 Score=23.35 Aligned_cols=45 Identities=13% Similarity=0.146 Sum_probs=33.6
Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 999999985-8923899961588988889999983398999999999
Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEA 71 (185)
Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~A 71 (185)
+..+|.+-+ +|-|++.||+.-|+ +.+|||.+....+++-....+.
T Consensus 27 A~~lf~~~G~~~~s~~~IA~~aGv-s~~sly~~F~sK~~L~~av~~~ 72 (251)
T 3npi_A 27 ALSLFSELGFSDAKLEAIAKKSGM-SKRMIHYHFGDKRGLYICCLEE 72 (251)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHCC-CHHHHHHHHCSHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999869252889999999794-9667888679999999999999
No 53
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural genomics, PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=74.76 E-value=4 Score=20.51 Aligned_cols=35 Identities=9% Similarity=0.302 Sum_probs=28.8
Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf 892389996158898888999998339899999999
Q gi|254781188|r 35 NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE 70 (185)
Q Consensus 35 ~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~ 70 (185)
+|-|++.|++.-|| +..|||....+.+++-....+
T Consensus 60 ~~~sv~~IA~~AGv-s~~t~Y~hF~sK~~Ll~av~~ 94 (273)
T 3c07_A 60 DRTTMRAIAQEAGV-SVGNAYYYFAGKEHLIQGFYD 94 (273)
T ss_dssp TTCCHHHHHHHHTS-CHHHHHHHCSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHH
T ss_conf 41789999999891-999999995876789999999
No 54
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genomics, PSI-2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=74.75 E-value=1.4 Score=23.63 Aligned_cols=41 Identities=10% Similarity=0.234 Sum_probs=30.9
Q ss_pred HHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf 9999985-89238999615889888899999833989999999
Q gi|254781188|r 28 GILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYT 69 (185)
Q Consensus 28 ~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa 69 (185)
.+|..-+ .|-|++.||+.-|+ +.+|||....+.+++-....
T Consensus 28 ~l~~~~G~~~~ti~~Ia~~agv-s~~t~Y~~F~sKe~Ll~~~~ 69 (207)
T 2rae_A 28 ELFTEQGFDATSVDEVAEASGI-ARRTLFRYFPSKNAIPWGDF 69 (207)
T ss_dssp HHHHHHCTTTSCHHHHHHHTTS-CHHHHHHHCSSTTTGGGCSH
T ss_pred HHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHH
T ss_conf 9999729130679999999791-98899888799999899999
No 55
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=74.69 E-value=1.3 Score=23.74 Aligned_cols=61 Identities=10% Similarity=0.206 Sum_probs=38.8
Q ss_pred CCCHHHHHHCCCCCCCCCCCHHH---HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf 74245554024656764458999---999999985-89238999615889888899999833989999999
Q gi|254781188|r 3 NLVKKAKKAVRAKKGCIYYSPEL---FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYT 69 (185)
Q Consensus 3 ~~~k~~~Ka~R~Kk~~i~Ys~Ei---ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa 69 (185)
||||.+...++..+ -..+ +.++|..-+ .|-|++.||+.-|+ +.+|||....+.+++-....
T Consensus 1 ~mp~~~~~~~~~er-----R~~Il~aA~~l~~~~G~~~~t~~~IA~~agv-s~~tiY~~F~sK~~L~~~~~ 65 (217)
T 3nrg_A 1 GMPTETFFNLPEEK-----RSRLIDVLLDEFAQNDYDSVSINRITERAGI-AKGSFYQYFADKKDCYLYLI 65 (217)
T ss_dssp CCCCHHHHTSCHHH-----HHHHHHHHHHHHHHSCGGGCCHHHHHHHHTC-CTTGGGGTCSSHHHHHHHHH
T ss_pred CCCCCCCCCCCHHH-----HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHH
T ss_conf 97998776797999-----9999999999999739240779999998588-82358886489999999999
No 56
>2zcm_A Biofilm operon icaabcd HTH-type negative transcriptional regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis RP62A} PDB: 2zcn_A
Probab=74.11 E-value=4.9 Score=19.94 Aligned_cols=43 Identities=12% Similarity=0.275 Sum_probs=32.0
Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf 999999985-89238999615889888899999833989999999
Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYT 69 (185)
Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa 69 (185)
+..++..-+ +|-|++.||+.-|+ +.+|||++..+.+++-....
T Consensus 16 A~~l~~~~G~~~~t~~~IA~~agv-s~~~lY~~F~sKe~L~~~~~ 59 (192)
T 2zcm_A 16 AITLFSEKGYDGTTLDDISKSVNI-KKASLYYHYDNKEEIYRKSV 59 (192)
T ss_dssp HHHHHHHHCTTTCCHHHHHHHTTC-CHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHH
T ss_conf 999999749262779999998890-98899788799999999999
No 57
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=73.73 E-value=4.4 Score=20.26 Aligned_cols=41 Identities=10% Similarity=0.220 Sum_probs=30.7
Q ss_pred HHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf 9999985-89238999615889888899999833989999999
Q gi|254781188|r 28 GILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYT 69 (185)
Q Consensus 28 ~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa 69 (185)
.+|..-+ .+-|++.||+.-|+ +.+|||....+.+++-....
T Consensus 37 ~l~~~~G~~~~t~~~IA~~agv-s~~tiY~yF~sK~~L~~~~~ 78 (217)
T 3mvp_A 37 DLFSDKTYFNVTTNEIAKKADV-SVGTLYAYFASKEDILTALL 78 (217)
T ss_dssp HHHHHHCGGGCCHHHHHHHHTS-CHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHH
T ss_conf 9998719342789999998890-98899998899999999999
No 58
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response element family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=73.15 E-value=4.9 Score=19.97 Aligned_cols=56 Identities=16% Similarity=0.134 Sum_probs=45.3
Q ss_pred HHHCCHHHHHHHHCCCCCCHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 98589238999615889888899999833----98999999999997379999998620023
Q gi|254781188|r 32 QVANGKALGHVLRKVGMPKYSTFYRWIKK----DLKLQEAYTEALQCRLDLLAEELLEEPAP 89 (185)
Q Consensus 32 rIA~GeSLr~ICkd~gMPs~sTV~rWL~k----deEfreqYa~Are~qaD~laEEILE~~a~ 89 (185)
|-..|.|...+...-|+ +.+|+.+|-+. +.+.-.++++|.....+.+++++ +...|
T Consensus 23 R~~~gltq~elA~~~gv-s~~~is~~E~g~~~~~~~~l~~la~~l~v~~~~l~~~~-~~~~p 82 (83)
T 3f6w_A 23 RSAAGITQKELAARLGR-PQSFVSKTENAERRLDVIEFMDFCRGIGTDPYALLSKL-EAMTP 82 (83)
T ss_dssp HHHHTCCHHHHHHHHTS-CHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHHHH-HTTCC
T ss_pred HHHCCCCHHHHHHHHCC-CHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHH-HCCCC
T ss_conf 99829999999989738-99999999879989999999999999599999998530-13698
No 59
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=73.14 E-value=3.7 Score=20.75 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHH-CCH--HHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 999999999985-892--38999615889888899999833
Q gi|254781188|r 23 PELFAGILDQVA-NGK--ALGHVLRKVGMPKYSTFYRWIKK 60 (185)
Q Consensus 23 ~Eiad~Ic~rIA-~Ge--SLr~ICkd~gMPs~sTV~rWL~k 60 (185)
.++.+-|...+. .|. |++.||+.-|+-|.+|+++|+..
T Consensus 9 ~~il~~I~~~~~~~g~~PS~~Eia~~~GikS~s~v~~~l~~ 49 (202)
T 1jhf_A 9 QEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKA 49 (202)
T ss_dssp HHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 99999999999982989669999998499972899999998
No 60
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=73.10 E-value=3.2 Score=21.23 Aligned_cols=56 Identities=14% Similarity=0.244 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999985----8923899961588988889999983398999999999997379999998620
Q gi|254781188|r 23 PELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEE 86 (185)
Q Consensus 23 ~Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE~ 86 (185)
..+.+..++.++ +|-|++.||+.-|+ +.+|||....+.+++-.... +.+.+++.+.
T Consensus 15 ~~I~~aa~~l~~~~G~~~~ti~~Ia~~agv-s~~t~Y~~F~sK~~L~~~~~-------~~~~~~~~~~ 74 (177)
T 3kkc_A 15 VAIYNAFISLLQENDYSKITVQDVIGLANV-GRSTFYSHYESKEVLLKELC-------EDLFHHLFKQ 74 (177)
T ss_dssp HHHHHHHHHHTTTSCTTTCCHHHHHHHHCC-CHHHHTTTCSSTHHHHHHHH-------HHHHHHHTSC
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHH-------HHHHHHHHHH
T ss_conf 999999999998869740769999999797-87774365898899999999-------9989999998
No 61
>2o7t_A Transcriptional regulator; NP_600854.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=72.65 E-value=5.3 Score=19.71 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=34.4
Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 892389996158898888999998339899999999999737999999862
Q gi|254781188|r 35 NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85 (185)
Q Consensus 35 ~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE 85 (185)
.|-|++.||+.-|+ +.+|||++....+++-....+-...+.....++.++
T Consensus 27 ~~~t~~~IA~~agv-s~~tiY~~F~sK~~L~~av~~~~~~~~~~~~~~~~~ 76 (199)
T 2o7t_A 27 DSLTMENIAEQAGV-GVATLYRNFPDRFTLDMACAQYLFNVVISLQLQAIS 76 (199)
T ss_dssp GGCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCC-CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 40779999998686-913177608999999999999999999999999875
No 62
>2fd5_A Transcriptional regulator; DNA-binding protein, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=72.57 E-value=2.9 Score=21.45 Aligned_cols=56 Identities=18% Similarity=0.137 Sum_probs=38.8
Q ss_pred HHHHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999985-8923899961588988889999983398999999999997379999998
Q gi|254781188|r 24 ELFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEEL 83 (185)
Q Consensus 24 Eiad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEI 83 (185)
+.+..++.+-+ +|-|++.||+.-|+ +.+|||+.....+++-.... +...+.+.+.+
T Consensus 14 ~aa~~l~~~~G~~~~si~~Ia~~agv-s~~~~Y~~F~sK~~L~~a~~---~~~~~~~~~~~ 70 (180)
T 2fd5_A 14 GAATQALLERGAVEPSVGEVMGAAGL-TVGGFYAHFQSKDALMLEAF---EQLLGKRRELL 70 (180)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHTTC-CGGGGGGTCSCHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCC-CCCCHHHHCCCHHHHHHHHH---HHHHHHHHHHH
T ss_conf 99999998709440679999998688-97617676589999999999---99999999999
No 63
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=72.57 E-value=5.4 Score=19.70 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=32.2
Q ss_pred HHHHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf 99999999985-892389996158898888999998339899999999
Q gi|254781188|r 24 ELFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE 70 (185)
Q Consensus 24 Eiad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~ 70 (185)
+.+..++.+=+ ++ |++.||+.-|+ +.+|||++..+.+++-...-.
T Consensus 22 ~aa~~l~~~~G~~~-T~~~IA~~agv-s~~tiY~~F~sK~~L~~~~~~ 67 (194)
T 2q24_A 22 AAAVRVFSEEGLDA-HLERIAREAGV-GSGTLYRNFPTREALIEAAYR 67 (194)
T ss_dssp HHHHHHHHHHCTTC-CHHHHHHHTTC-CHHHHHHHCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999869667-69999998398-874698876999999999999
No 64
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=71.63 E-value=2.9 Score=21.51 Aligned_cols=64 Identities=13% Similarity=0.223 Sum_probs=39.2
Q ss_pred CCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHH
Q ss_conf 74245554024656764458999999999985----8923899961588988889999983398999999
Q gi|254781188|r 3 NLVKKAKKAVRAKKGCIYYSPELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAY 68 (185)
Q Consensus 3 ~~~k~~~Ka~R~Kk~~i~Ys~Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqY 68 (185)
||+.++++.-++.+..- --..+.+.-.+.++ .|-|++.||+.-|+ |.+|||+...+.+++-...
T Consensus 1 ~m~~~r~rgRp~~~~~~-~R~~Il~aA~~l~~~~G~~~~si~~IA~~agv-s~~tlY~~F~sK~~L~~a~ 68 (208)
T 3cwr_A 1 GMVEQRNRGRPAVPDAV-VRESIVGAAQRLLSSGGAAAMTMEGVASEAGI-AKKTLYRFASGRADLIGLL 68 (208)
T ss_dssp ----------CCCCHHH-HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CCCCCCCCCCCHHHHHHHH
T ss_conf 99999999999998299-99999999999999869150779999999489-9664035899999999999
No 65
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=70.82 E-value=5.8 Score=19.45 Aligned_cols=44 Identities=9% Similarity=0.233 Sum_probs=30.7
Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHC-CHHHHHHHHH
Q ss_conf 999999985-89238999615889888899999833-9899999999
Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKK-DLKLQEAYTE 70 (185)
Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~k-deEfreqYa~ 70 (185)
+-.++..-+ +|-|++.||+.-|+ +.+|||..... ++.+-.....
T Consensus 15 a~~l~~~~G~~~~s~~~Ia~~agv-s~~~~y~~F~skkd~l~~~~~~ 60 (191)
T 1sgm_A 15 ASRLSQLQGYHATGLNQIVKESGA-PKGSLYHFFPNGKEELAIEAVT 60 (191)
T ss_dssp HHHHHHHHCTTTCCHHHHHHHHCC-CSCHHHHSTTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCCHHHHHHHHHH
T ss_conf 999999839250779999998691-9889978849918889999999
No 66
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281, TETR transcriptional regulator, PSI-2; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=70.55 E-value=5.9 Score=19.40 Aligned_cols=35 Identities=11% Similarity=0.291 Sum_probs=28.8
Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf 892389996158898888999998339899999999
Q gi|254781188|r 35 NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE 70 (185)
Q Consensus 35 ~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~ 70 (185)
.|-|++.||+.-|| +.+|||....+.+++-....+
T Consensus 62 ~~~ti~~IA~~aGv-S~~tlY~yF~sKe~L~~a~~~ 96 (229)
T 3bni_A 62 DALSTRAVALRADV-PIGSVYRFFGNKRQMADALAQ 96 (229)
T ss_dssp TTCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHH
T ss_conf 10679999999596-999999986999999999999
No 67
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=70.33 E-value=6 Score=19.37 Aligned_cols=43 Identities=12% Similarity=0.250 Sum_probs=32.6
Q ss_pred HHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHH
Q ss_conf 99999999985----892389996158898888999998339899999
Q gi|254781188|r 24 ELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEA 67 (185)
Q Consensus 24 Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreq 67 (185)
++.+.-...++ .|-|++.||+.-|+ +..|||+...+.+++-..
T Consensus 35 ~Il~aA~~l~~~~G~~~~ti~~Ia~~agv-s~~t~Y~~F~sKe~L~~a 81 (218)
T 3dcf_A 35 QIIKVATELFREKGYYATSLDDIADRIGF-TKPAIYYYFKSKEDVLFA 81 (218)
T ss_dssp HHHHHHHHHHHHTCTTTCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CCCCCHHHCCCCHHHHHH
T ss_conf 99999999999849351789999998198-934102414970699999
No 68
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=70.25 E-value=5.1 Score=19.83 Aligned_cols=47 Identities=15% Similarity=0.139 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf 999999999985----892389996158898888999998339899999999
Q gi|254781188|r 23 PELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE 70 (185)
Q Consensus 23 ~Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~ 70 (185)
+++.+.-...++ +|-|++.||+.-|+ +.+|||+...+.+++-....+
T Consensus 11 e~Il~aa~~l~~~~G~~~~t~~~IA~~agv-s~~t~Y~~F~~K~~L~~~~~~ 61 (195)
T 3frq_A 11 DEVLEAATVVLKRCGPIEFTLSGVAKEVGL-SRAALIQRFTNRDTLLVRMME 61 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHTC-CHHHHHHHHCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CCCHHHHHCCCHHHHHHHHHH
T ss_conf 999999999999759130779999998789-822178739599999999999
No 69
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=69.94 E-value=5.7 Score=19.54 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHH---CCHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 8999999999985---89238999615889888899999833
Q gi|254781188|r 22 SPELFAGILDQVA---NGKALGHVLRKVGMPKYSTFYRWIKK 60 (185)
Q Consensus 22 s~Eiad~Ic~rIA---~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185)
+=+-+-.|++.|+ .+.++..|++.-|+| .+|+++.|+.
T Consensus 6 sl~Ral~IL~~~a~~~~~~tl~eia~~lglp-ksT~~Rll~t 46 (249)
T 1mkm_A 6 TLKKAFEILDFIVKNPGDVSVSEIAEKFNMS-VSNAYKYMVV 46 (249)
T ss_dssp THHHHHHHHHHHHHCSSCBCHHHHHHHTTCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC-HHHHHHHHHH
T ss_conf 9999999999997389998999999987919-9999999999
No 70
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=69.53 E-value=3.6 Score=20.89 Aligned_cols=34 Identities=12% Similarity=0.027 Sum_probs=30.4
Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 99999998589238999615889888899999833
Q gi|254781188|r 26 FAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60 (185)
Q Consensus 26 ad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185)
--+||..++.|.|.+.|...-++ |..||...+..
T Consensus 21 E~~vl~~l~~G~s~~eIA~~l~i-S~~TV~~~~~~ 54 (79)
T 1x3u_A 21 ERQVLSAVVAGLPNKSIAYDLDI-SPRTVEVHRAN 54 (79)
T ss_dssp HHHHHHHHTTTCCHHHHHHHTTS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHCC-CHHHHHHHHHH
T ss_conf 99999999907999999999798-89899999999
No 71
>3he0_A Transcriptional regulator, TETR family; ACRR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=69.34 E-value=4.2 Score=20.38 Aligned_cols=45 Identities=18% Similarity=0.374 Sum_probs=32.6
Q ss_pred HHHHHHHHHH---H-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf 9999999998---5-89238999615889888899999833989999999
Q gi|254781188|r 24 ELFAGILDQV---A-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYT 69 (185)
Q Consensus 24 Eiad~Ic~rI---A-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa 69 (185)
.+.+.-+..+ + .|-|++.||+.-|+ +.+|||+...+.+++-..+.
T Consensus 15 ~Il~aa~~l~~~~G~~~~si~~Ia~~agv-s~~tiY~~F~sK~~L~~~~~ 63 (196)
T 3he0_A 15 QILAAAEQLIAESGFQGLSMQKLANEAGV-AAGTIYRYFSDKEHLLEEVR 63 (196)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHTS-CHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CCCCCCCCCCCHHHHHHHHH
T ss_conf 99999999999739563779999998689-97754021899999999999
No 72
>3bjb_A Probable transcriptional regulator, TETR family protein; APC7331, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodococcus SP}
Probab=69.30 E-value=2.8 Score=21.58 Aligned_cols=48 Identities=15% Similarity=0.287 Sum_probs=35.4
Q ss_pred HHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 99999999985----89238999615889888899999833989999999999
Q gi|254781188|r 24 ELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEAL 72 (185)
Q Consensus 24 Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Ar 72 (185)
.+.+.-.+.++ +|-|++.||+.-|+ +.+|||+.....+++-.......
T Consensus 26 ~Il~aA~~l~~~~G~~~~t~~~IA~~agv-s~~t~Y~~F~sK~~Ll~~~~~~~ 77 (207)
T 3bjb_A 26 RMLEAAIELATEKELARVQMHEVAKRAGV-AIGTLYRYFPSKTHLFVAVMVDQ 77 (207)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99999999999749352779999999890-99886131899999999999999
No 73
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=68.03 E-value=5.6 Score=19.56 Aligned_cols=51 Identities=20% Similarity=0.170 Sum_probs=35.2
Q ss_pred HCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5892389996158898888999998339899999999999737999999862
Q gi|254781188|r 34 ANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85 (185)
Q Consensus 34 A~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE 85 (185)
-+|-|++.||+.-|+ +.+|||......+++-....+....+.....+++..
T Consensus 21 ~~~~ti~~Ia~~agv-s~~t~Y~yF~~K~~L~~~~~~~~~~~~~~~~~~~~~ 71 (208)
T 2g3b_A 21 IRGLRVNDVAEVAGV-SPGLLYYHFKDRIGLLEAALNYINDRARAYRSEGEG 71 (208)
T ss_dssp HHHCCHHHHHHHHTS-CHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred CCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 150779999999792-999998886999999999999998889999998752
No 74
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=68.00 E-value=6.7 Score=19.05 Aligned_cols=46 Identities=20% Similarity=0.227 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf 99999999985892389996158898888999998339899999999
Q gi|254781188|r 24 ELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE 70 (185)
Q Consensus 24 Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~ 70 (185)
+.+..+|.+-+-+-|++.||+.-|+ +..|||......+++-.....
T Consensus 23 ~aA~~l~~~~G~~~T~~~IA~~aGv-s~~tlY~~F~sKe~L~~a~~~ 68 (199)
T 2rek_A 23 EAAAAEVARHGADASLEEIARRAGV-GSATLHRHFPSRWGLLQAVFQ 68 (199)
T ss_dssp HHHHHHHHHHGGGCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999986978889999999791-999998775899889999999
No 75
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=67.36 E-value=3.5 Score=20.91 Aligned_cols=33 Identities=12% Similarity=0.106 Sum_probs=29.7
Q ss_pred HHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 9999998589238999615889888899999833
Q gi|254781188|r 27 AGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60 (185)
Q Consensus 27 d~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185)
-+|+..++.|.|-+.|+...|+ |..||...+..
T Consensus 4 ~evl~ll~~G~s~~eIA~~l~i-S~~TV~~h~~~ 36 (61)
T 2jpc_A 4 RQVLKLIDEGYTNHGISEKLHI-SIKTVETHRMN 36 (61)
T ss_dssp HHHHHHHHTSCCSHHHHHHTCS-CHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHH
T ss_conf 9999999827999999989698-99999999999
No 76
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2; 2.40A {Streptomyces coelicolor A3}
Probab=67.32 E-value=6.9 Score=18.96 Aligned_cols=45 Identities=13% Similarity=0.229 Sum_probs=33.5
Q ss_pred HHHHHHHHHH---H-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf 9999999998---5-89238999615889888899999833989999999
Q gi|254781188|r 24 ELFAGILDQV---A-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYT 69 (185)
Q Consensus 24 Eiad~Ic~rI---A-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa 69 (185)
+|.+.=.+.+ + +|-|++.||+.-|+ +..|||.+..+.+++-....
T Consensus 20 ~Il~aA~~lf~e~G~~~~t~~~IA~~aGv-s~~tlY~~F~sK~~L~~a~~ 68 (237)
T 2hxo_A 20 RIVGAAVELLDTVGERGLTFRALAERLAT-GPGAIYWHITGKAELLGAAT 68 (237)
T ss_dssp HHHHHHHHHHHHTTTTTCCHHHHHHHHTS-CGGGGGGTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CCCCCCCCCCCHHHHHHHHH
T ss_conf 99999999999839352779999998784-95653010889899999999
No 77
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, structural genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=67.21 E-value=6.9 Score=18.95 Aligned_cols=54 Identities=7% Similarity=0.029 Sum_probs=35.2
Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999985-8923899961588988889999983398999999999997379999998
Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEEL 83 (185)
Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEI 83 (185)
+.++|..-+ .|-|++.||+.-|+ +.+|||.+..+.+++-... .....+.+.+.+
T Consensus 21 A~~l~~~~G~~~~ti~~Ia~~agv-s~~t~Y~~F~sK~~L~~~~---~~~~~~~~~~~~ 75 (198)
T 3cjd_A 21 AEAQIEAEGLASLRARELARQADC-AVGAIYTHFQDLNALTLEV---NGRTFARLGAAV 75 (198)
T ss_dssp HHHHHHHHCGGGCCHHHHHHHHTS-CHHHHHHHCSSHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CCCHHHHCCCCHHHHHHHH---HHHHHHHHHHHH
T ss_conf 999999709340579999998288-9321023079778899999---999999999999
No 78
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=66.83 E-value=7 Score=18.90 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=28.6
Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHH
Q ss_conf 8923899961588988889999983398999999
Q gi|254781188|r 35 NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAY 68 (185)
Q Consensus 35 ~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqY 68 (185)
++-|++.||+.-|| +.+|||.+..+.+++-+..
T Consensus 39 ~~~Sv~dIa~~AgV-s~~t~Y~~F~sK~~L~~~v 71 (185)
T 3o60_A 39 ESISIKDLCEQARV-SRATFYRHHKEIIQVIEVQ 71 (185)
T ss_dssp TTCCHHHHHHHHTC-CHHHHHHHCSSTHHHHHHH
T ss_pred CCCCHHHHHHHHCC-CCCCCCHHCCCHHHHHHHH
T ss_conf 10879999998788-8666223469899999999
No 79
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=65.65 E-value=7.4 Score=18.75 Aligned_cols=39 Identities=15% Similarity=0.189 Sum_probs=30.0
Q ss_pred HHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHH
Q ss_conf 9999985-892389996158898888999998339899999
Q gi|254781188|r 28 GILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEA 67 (185)
Q Consensus 28 ~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreq 67 (185)
+++..-+ +|-|++.||+.-|+ +.+|||....+.+++-..
T Consensus 46 ~l~~~~G~~~~T~~~IA~~aGv-s~~tiY~yF~sKe~Ll~~ 85 (221)
T 3g7r_A 46 RIFYAEGIHSVGIDRITAEAQV-TRATLYRHFSGKDDLILA 85 (221)
T ss_dssp HHHHHHCSTTSCHHHHHHHHTC-CHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHH
T ss_conf 9999829140879999999891-998999883769999999
No 80
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=65.21 E-value=4.6 Score=20.15 Aligned_cols=38 Identities=11% Similarity=0.197 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHCCH--------HHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 8999999999985892--------38999615889888899999833
Q gi|254781188|r 22 SPELFAGILDQVANGK--------ALGHVLRKVGMPKYSTFYRWIKK 60 (185)
Q Consensus 22 s~Eiad~Ic~rIA~Ge--------SLr~ICkd~gMPs~sTV~rWL~k 60 (185)
-.++++.|+++|.+|. |.+++|...|+ |..||.+-+..
T Consensus 13 y~qi~~~i~~~I~~G~~~pG~~LPser~La~~~~v-Sr~tvr~Al~~ 58 (102)
T 1v4r_A 13 YADVATHFRTLIKSGELAPGDTLPSVADIRAQFGV-AAKTVSRALAV 58 (102)
T ss_dssp HHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSS-CTTHHHHHTTT
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC-CHHHHHHHHHH
T ss_conf 99999999999985999993998379999999798-77999999999
No 81
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=64.96 E-value=7.6 Score=18.67 Aligned_cols=77 Identities=9% Similarity=0.124 Sum_probs=47.3
Q ss_pred CCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 874245554024656764458999999999985----8923899961588988889999983398999999999997379
Q gi|254781188|r 2 SNLVKKAKKAVRAKKGCIYYSPELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLD 77 (185)
Q Consensus 2 s~~~k~~~Ka~R~Kk~~i~Ys~Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD 77 (185)
+.|++.++.....++ +.+.+.-...++ ++-|++.||+.-|+ +.+|||....+.+++-.........+..
T Consensus 2 ~~M~r~r~~~~e~~r------~~Il~aa~~lf~e~G~~~~t~~~Ia~~agv-s~~tlY~~F~~K~~L~~a~~~~~~~~~~ 74 (203)
T 3ccy_A 2 NAMARTRSADYENIR------DTIIERAAAMFARQGYSETSIGDIARACEC-SKSRLYHYFDSKEAVLRDMLTTHVDSLL 74 (203)
T ss_dssp ----------CTTHH------HHHHHHHHHHHHHTCTTTSCHHHHHHHTTC-CGGGGTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHH------HHHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CCCCCHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999999988889999------999999999999849452789999998589-8677302489999999999999999999
Q ss_pred HHHHHHHH
Q ss_conf 99999862
Q gi|254781188|r 78 LLAEELLE 85 (185)
Q Consensus 78 ~laEEILE 85 (185)
-..+++++
T Consensus 75 ~~~~~~~~ 82 (203)
T 3ccy_A 75 ERCRQVLY 82 (203)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHC
T ss_conf 99998732
No 82
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=64.96 E-value=7.6 Score=18.69 Aligned_cols=42 Identities=14% Similarity=0.266 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHHCC-HHHHHHHHCCCCCCHHHHHHHHHCCH
Q ss_conf 45899999999998589-23899961588988889999983398
Q gi|254781188|r 20 YYSPELFAGILDQVANG-KALGHVLRKVGMPKYSTFYRWIKKDL 62 (185)
Q Consensus 20 ~Ys~Eiad~Ic~rIA~G-eSLr~ICkd~gMPs~sTV~rWL~kde 62 (185)
-++.+-=..|...+-.| .|+..+|+..|+ +.+.|++|.....
T Consensus 33 RWvA~RKa~VV~aV~~G~~S~~EAcrrY~L-S~eEf~~W~~a~~ 75 (101)
T 2oa4_A 33 RWVASRKIAVVRGVIYGLITLAEAKQTYGL-SDEEFNSWVSALA 75 (101)
T ss_dssp CCCHHHHHHHHHHHHHTTCCHHHHHHTTCS-SHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHHCCCCCHHHHHHHHCC-CHHHHHHHHHHHH
T ss_conf 326999999999998384579999988399-9999999999999
No 83
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=64.55 E-value=3.9 Score=20.59 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 9999999998589238999615889888899999833
Q gi|254781188|r 24 ELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60 (185)
Q Consensus 24 Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185)
.---+|+..++.|.|-+.|+..-++ |..||...+..
T Consensus 24 ~rE~~vl~lla~G~s~~eIA~~L~i-S~~TV~~~~~~ 59 (82)
T 1je8_A 24 PRERDILKLIAQGLPNKMIARRLDI-TESTVKVHVKH 59 (82)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHTS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHH
T ss_conf 9999999999928999999989795-99999999999
No 84
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia}
Probab=64.26 E-value=5.6 Score=19.55 Aligned_cols=46 Identities=13% Similarity=0.213 Sum_probs=33.8
Q ss_pred HHHHH---HHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf 99999---999985-892389996158898888999998339899999999
Q gi|254781188|r 24 ELFAG---ILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE 70 (185)
Q Consensus 24 Eiad~---Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~ 70 (185)
.+.+. +|..-+ .|-|++.||+.-|+ +..|||++..+.+++-..+.+
T Consensus 15 ~Il~aA~~l~~~~G~~~~t~~~Ia~~Agv-s~g~lY~~F~sK~~L~~~~~~ 64 (219)
T 2w53_A 15 GILDAAEACFHEHGVARTTLEMIGARAGY-TRGAVYWHFKNKSEVLAAIVE 64 (219)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHTS-CHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CCCCCCCCCCCHHHHHHHHHH
T ss_conf 99999999999859240889999998488-955420478999999999999
No 85
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=63.62 E-value=3.1 Score=21.29 Aligned_cols=35 Identities=14% Similarity=0.074 Sum_probs=31.1
Q ss_pred HHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 999999998589238999615889888899999833
Q gi|254781188|r 25 LFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60 (185)
Q Consensus 25 iad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185)
---+|+..++.|.+-+.|+..-++ |.+||...+..
T Consensus 33 rE~evl~ll~~G~s~~eIA~~L~i-S~~TV~~~~~~ 67 (91)
T 2rnj_A 33 REMEILLLIAKGYSNQEIASASHI-TIKTVKTHVSN 67 (91)
T ss_dssp HHHHHHHHHHTTCCTTHHHHHHTC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHH
T ss_conf 999999999928999999999788-99999999999
No 86
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=63.00 E-value=8.3 Score=18.43 Aligned_cols=45 Identities=9% Similarity=0.121 Sum_probs=32.4
Q ss_pred HHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 99999985-89238999615889888899999833989999999999
Q gi|254781188|r 27 AGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEAL 72 (185)
Q Consensus 27 d~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Ar 72 (185)
..++..-+ ++-|++.||+.-|+ +.+|||++....+++-....+..
T Consensus 18 ~~l~~~~G~~~~t~~~Ia~~agv-s~~t~Y~~F~sK~~L~~a~~~~~ 63 (194)
T 2g7s_A 18 RTLIIRGGYNSFSYADISQVVGI-RNASIHHHFPSKSDLVCKLVSQY 63 (194)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHCC-CHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCC-CHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99999749574779999998782-92133115899999999999999
No 87
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=62.53 E-value=8.4 Score=18.37 Aligned_cols=58 Identities=16% Similarity=0.179 Sum_probs=39.7
Q ss_pred HHHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999985-8923899961588988889999983398999999999997379999998
Q gi|254781188|r 25 LFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEEL 83 (185)
Q Consensus 25 iad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEI 83 (185)
.+-.++..-+ +|-|++.||+.-|+ |.+|||.+....+++-....+......+.+.+..
T Consensus 19 aa~~l~~~~G~~~~s~~~Ia~~agv-s~~tiY~~F~~K~~L~~a~~~~~~~~~~~~~~~~ 77 (210)
T 2xdn_A 19 AAERAFYKRGVARTTLADIAELAGV-TRGAIYWHFNNKAELVQALLDSLAETHDHLARAS 77 (210)
T ss_dssp HHHHHHHHHCSTTCCHHHHHHHHTC-CTTHHHHHCSSHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999759140779999999792-9889988869999999988999999999999998
No 88
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=62.44 E-value=8.5 Score=18.36 Aligned_cols=62 Identities=10% Similarity=0.105 Sum_probs=40.9
Q ss_pred HHHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999985-89238999615889888899999833989999999999973799999986200
Q gi|254781188|r 25 LFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEEP 87 (185)
Q Consensus 25 iad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE~~ 87 (185)
.+..+|..-+ .|-|++.||+.-|+ +.+|||....+.+++-.........+.....++.+...
T Consensus 16 aa~~l~~~~G~~~~s~~~IA~~agv-s~~~~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~ 78 (194)
T 3dpj_A 16 AADELFYRQGFAQTSFVDISAAVGI-SRGNFYYHFKTKDEILAEVIRLRLARTAQMLADWQGTG 78 (194)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCC-CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999749251889999998682-91268887599999999999999999999999987267
No 89
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=61.56 E-value=8.8 Score=18.26 Aligned_cols=56 Identities=21% Similarity=0.317 Sum_probs=37.3
Q ss_pred HHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999985----8923899961588988889999983398999999999997379999998
Q gi|254781188|r 24 ELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEEL 83 (185)
Q Consensus 24 Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEI 83 (185)
.+.+.-.+.+. .|-|++.|++.-|| +.+|||++....+++-.. +.....+.+.+.+
T Consensus 13 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agv-s~~t~Y~~F~sK~~L~~~---~~~~~~~~~~~~~ 72 (203)
T 2np5_A 13 RLAAALFDVAAESGLEGASVREVAKRAGV-SIGAVQHHFSTKDEMFAF---ALRTLVDKLLARL 72 (203)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHH---HHHHHHHHHHHHH
T ss_conf 99999999999729030779999999790-988770106999999999---9999888899999
No 90
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural genomics, midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=61.25 E-value=5 Score=19.88 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=32.9
Q ss_pred HHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf 99999999985----89238999615889888899999833989999999
Q gi|254781188|r 24 ELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYT 69 (185)
Q Consensus 24 Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa 69 (185)
.+.+.-++.++ ++-|++.||+.-|+ +.+|||.+..+.+++-....
T Consensus 20 rIl~AA~~l~~~~G~~~~s~~~Ia~~agv-s~~t~Y~~F~sK~~L~~a~~ 68 (211)
T 3him_A 20 RIRAAAIEVFAAKGYGATTTREIAASLDM-SPGAVYPHYKTKESLLYAIS 68 (211)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHTTC-CTTSSTTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHH
T ss_conf 99999999999859351779999999790-89788443499999999999
No 91
>2krf_A Transcriptional regulatory protein COMA; activator, competence, DNA-binding, transcription regulation component regulatory system; NMR {Bacillus subtilis}
Probab=61.08 E-value=5.4 Score=19.66 Aligned_cols=38 Identities=13% Similarity=0.148 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 5899999999998589238999615889888899999833
Q gi|254781188|r 21 YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60 (185)
Q Consensus 21 Ys~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185)
.|+. --+|+..++.|.|.+.|....++ |..||...+..
T Consensus 13 Lt~r-E~~vl~~~~~G~s~~eIA~~l~i-S~~TV~~~~~~ 50 (73)
T 2krf_A 13 LTPR-ECLILQEVEKGFTNQEIADALHL-SKRSIEYSLTS 50 (73)
T ss_dssp SCHH-HHHHHHHHHTTSCHHHHHHHHTC-CHHHHHHHHHH
T ss_pred CCHH-HHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHH
T ss_conf 8999-99999999958999998416188-89999999999
No 92
>2qco_A CMER; transcriptional regulator protein; 2.25A {Campylobacter jejuni} PDB: 3hgg_A* 3hgy_A*
Probab=61.02 E-value=2.1 Score=22.41 Aligned_cols=43 Identities=16% Similarity=0.191 Sum_probs=31.7
Q ss_pred HHHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHH
Q ss_conf 9999999985-8923899961588988889999983398999999
Q gi|254781188|r 25 LFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAY 68 (185)
Q Consensus 25 iad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqY 68 (185)
.+..+|..-+ ++-|++.||+.-|+ +.+|||++..+.+++-...
T Consensus 21 aA~~lf~~~G~~~~t~~~IA~~agv-s~~tiY~yF~sKe~L~~~v 64 (210)
T 2qco_A 21 VALELFLTKGYQETSLSDIIKLSGG-SYSNIYDGFKSKEGLFFEI 64 (210)
T ss_dssp HHHHHHHHTTTTTCCHHHHHHHHCT-TCTTCSSSTTSHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHH
T ss_conf 9999999749152879999998687-8406888689858999999
No 93
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=61.02 E-value=8.8 Score=18.26 Aligned_cols=61 Identities=16% Similarity=0.052 Sum_probs=43.6
Q ss_pred HHHHHHH-HHHHCCHHHHHHHHCCCCCCHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999-998589238999615889888899999833----9899999999999737999999862
Q gi|254781188|r 24 ELFAGIL-DQVANGKALGHVLRKVGMPKYSTFYRWIKK----DLKLQEAYTEALQCRLDLLAEELLE 85 (185)
Q Consensus 24 Eiad~Ic-~rIA~GeSLr~ICkd~gMPs~sTV~rWL~k----deEfreqYa~Are~qaD~laEEILE 85 (185)
.+...|- .|...|.|...++..-|+ +.+|+.+|-+. +-+.-..+++|.........|.+++
T Consensus 10 ~l~~~lk~~R~~~gltq~elA~~~gv-s~~~is~~E~G~~~~s~~~l~~i~~~lg~~~~~~~d~ll~ 75 (84)
T 2ef8_A 10 CLVQLLTKLRKEASLSQSELAIFLGL-SQSDISKIESFERRLDALELFELLEVVASRLGLPMDILLK 75 (84)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHTTSSCCBHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHC
T ss_conf 99999999999949999999999747-9999999987999999999999999948985853998813
No 94
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Oenococcus oeni psu-1}
Probab=60.71 E-value=8.8 Score=18.25 Aligned_cols=37 Identities=16% Similarity=0.104 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHCCH--------HHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 8999999999985892--------3899961588988889999983
Q gi|254781188|r 22 SPELFAGILDQVANGK--------ALGHVLRKVGMPKYSTFYRWIK 59 (185)
Q Consensus 22 s~Eiad~Ic~rIA~Ge--------SLr~ICkd~gMPs~sTV~rWL~ 59 (185)
-..+++.|.+.|.+|. |.+.+|...|+ |..||.+-+.
T Consensus 13 y~qi~~~i~~~I~~g~l~~G~~LPser~La~~~~v-Sr~tVr~Al~ 57 (126)
T 3by6_A 13 YLQLVDRIKNEVATDVLSANDQLPSVRETALQEKI-NPNTVAKAYK 57 (126)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC-CHHHHHHHHH
T ss_conf 99999999999985999992999049999999798-9899999999
No 95
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, protein structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=60.42 E-value=9.2 Score=18.13 Aligned_cols=42 Identities=12% Similarity=0.202 Sum_probs=32.6
Q ss_pred HHHHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHH
Q ss_conf 99999999985-89238999615889888899999833989999
Q gi|254781188|r 24 ELFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQE 66 (185)
Q Consensus 24 Eiad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfre 66 (185)
+.+-.+|.+-+ ++-|++.||+.-|+ +.+|||++..+.+++-.
T Consensus 22 ~aA~~lf~~~G~~~~ti~~Ia~~agv-s~~t~Y~~F~~Ke~L~~ 64 (221)
T 3c2b_A 22 DQALRLLVEGGEKALTTSGLARAANC-SKESLYKWFGDRDGLLA 64 (221)
T ss_dssp HHHHHHHHHHCGGGCCHHHHHHHHTC-CHHHHHHHHSSHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHH
T ss_conf 99999999759130779999999794-98899988799999999
No 96
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, structural genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=59.69 E-value=9.4 Score=18.05 Aligned_cols=47 Identities=9% Similarity=0.195 Sum_probs=33.4
Q ss_pred HHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 99999999985----8923899961588988889999983398999999999
Q gi|254781188|r 24 ELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEA 71 (185)
Q Consensus 24 Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~A 71 (185)
++.+.-...+. +|-|++.||+.-|+ +.+|||.+..+.+++-....+.
T Consensus 12 ~Il~aa~~l~~~~G~~~~s~~~IA~~agv-s~~tlY~~F~~K~~L~~~~~~~ 62 (183)
T 1zk8_A 12 KIVETAAEIADANGVQEVTLASLAQTLGV-RSPSLYNHVKGLQDVRKNLGIY 62 (183)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTS-CHHHHTTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999999749250769999998891-9889988869999999999999
No 97
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=59.14 E-value=3.5 Score=20.97 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHH---CCHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 8999999999985---89238999615889888899999833
Q gi|254781188|r 22 SPELFAGILDQVA---NGKALGHVLRKVGMPKYSTFYRWIKK 60 (185)
Q Consensus 22 s~Eiad~Ic~rIA---~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185)
+=+-+-.|++.|+ .|.++..|++.-||| .+|+++-|+.
T Consensus 21 sl~Ral~ILe~l~~~~~~~~l~eia~~lgl~-~sT~~RlL~t 61 (260)
T 2o0y_A 21 SVTRVIDLLELFDAAHPTRSLKELVEGTKLP-KTTVVRLVAT 61 (260)
T ss_dssp HHHHHHHHHTTCBTTBSSBCHHHHHHHHCCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC-HHHHHHHHHH
T ss_conf 9999999999997479998999999997919-9999999999
No 98
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein structure initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=58.91 E-value=9.7 Score=17.96 Aligned_cols=45 Identities=11% Similarity=0.211 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHH
Q ss_conf 999999999985----8923899961588988889999983398999999
Q gi|254781188|r 23 PELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAY 68 (185)
Q Consensus 23 ~Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqY 68 (185)
+.+.+.-.+.++ +|-|++.||+.-|+ +.+|||......+++-...
T Consensus 14 e~Il~aA~~l~~~~G~~~~ti~~IA~~agv-s~~t~Y~~F~sK~~L~~a~ 62 (202)
T 2i10_A 14 QVALQTAMELFWRQGYEGTSITDLTKALGI-NPPSLYAAFGSKRDLFEKT 62 (202)
T ss_dssp HHHHHHHHHHHHHHTTTTCCHHHHHHHHTC-CHHHHHHHHCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHH
T ss_conf 999999999999869140769999999790-9999977618999999999
No 99
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=58.86 E-value=5.3 Score=19.74 Aligned_cols=42 Identities=7% Similarity=0.086 Sum_probs=31.7
Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHH
Q ss_conf 999999985-8923899961588988889999983398999999
Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAY 68 (185)
Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqY 68 (185)
+.++|..-+ +|-|++.||+.-|+ +.+|||.+....+++-...
T Consensus 18 A~~lf~~~G~~~~ti~~Ia~~agv-s~~tiY~~F~sKe~L~~~~ 60 (203)
T 3cdl_A 18 AIAEFGDRGFEITSMDRIAARAEV-SKRTVYNHFPSKEELFAEM 60 (203)
T ss_dssp HHHHHHHHCTTTCCHHHHHHHTTS-CHHHHHTTSSSHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CCCCHHHHCCCHHHHHHHH
T ss_conf 999999759050789999998685-9552552189869999999
No 100
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, structural genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=58.09 E-value=6.8 Score=18.99 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=33.1
Q ss_pred HHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf 99999999985----89238999615889888899999833989999999
Q gi|254781188|r 24 ELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYT 69 (185)
Q Consensus 24 Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa 69 (185)
+|.+.-...++ +|-|++.||+.-|+ +.+|||.+....+++-....
T Consensus 17 ~Il~AA~~l~~~~G~~~~t~~~IA~~aGv-s~~tlY~~F~sK~~Ll~a~~ 65 (231)
T 2qib_A 17 QLIGVALDLFSRRSPDEVSIDEIASAAGI-SRPLVYHYFPGKLSLYEAAL 65 (231)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHTS-CHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHH
T ss_conf 99999999999739450779999999793-98899888499689999999
No 101
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulator; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=57.31 E-value=6.3 Score=19.23 Aligned_cols=36 Identities=8% Similarity=0.087 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 9999999998589238999615889888899999833
Q gi|254781188|r 24 ELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60 (185)
Q Consensus 24 Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185)
.---+|+..++.|.|-+.|...-|+ |..||...+..
T Consensus 14 ~rE~~vl~~l~~G~s~~eIA~~L~i-S~~TV~~h~~~ 49 (74)
T 1fse_A 14 KREREVFELLVQDKTTKEIASELFI-SEKTVRNHISN 49 (74)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHTS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHH
T ss_conf 9999999999927999999999798-99999999999
No 102
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=56.87 E-value=11 Score=17.74 Aligned_cols=38 Identities=13% Similarity=0.139 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHCCH--------HHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 8999999999985892--------38999615889888899999833
Q gi|254781188|r 22 SPELFAGILDQVANGK--------ALGHVLRKVGMPKYSTFYRWIKK 60 (185)
Q Consensus 22 s~Eiad~Ic~rIA~Ge--------SLr~ICkd~gMPs~sTV~rWL~k 60 (185)
-.++++.|...|.+|. |.+.+|...|+ |..||.+-+..
T Consensus 15 Y~qI~~~i~~~I~~G~l~~G~~LPser~La~~~~V-Sr~tVr~Al~~ 60 (125)
T 3neu_A 15 YSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAV-NPNTVSRAYQE 60 (125)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC-CHHHHHHHHHH
T ss_conf 99999999999984999996999549999999392-88999999999
No 103
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=56.68 E-value=7.5 Score=18.74 Aligned_cols=13 Identities=15% Similarity=0.161 Sum_probs=6.6
Q ss_pred CHHHHHHHHHCCH
Q ss_conf 8889999983398
Q gi|254781188|r 50 KYSTFYRWIKKDL 62 (185)
Q Consensus 50 s~sTV~rWL~kde 62 (185)
+++|+..++-++.
T Consensus 28 ~f~~~~~~~~~~~ 40 (164)
T 3mzy_A 28 SFSSFAFLCIRRE 40 (164)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
T ss_conf 8999999999998
No 104
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=56.33 E-value=5.4 Score=19.68 Aligned_cols=38 Identities=21% Similarity=0.209 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 5899999999998589238999615889888899999833
Q gi|254781188|r 21 YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60 (185)
Q Consensus 21 Ys~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185)
.|+ ---+|+..++.|.+.+.|+..-++ |..||...+..
T Consensus 35 LT~-rE~~vl~ll~~G~s~~eIA~~l~i-S~~TV~~~~~~ 72 (99)
T 1p4w_A 35 LSP-KESEVLRLFAEGFLVTEIAKKLNR-SIKTISSQKKS 72 (99)
T ss_dssp CCH-HHHHHHHHHHHTCCHHHHHHHHTS-CHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHH
T ss_conf 899-999999999938999999777299-89999999999
No 105
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=55.93 E-value=5.2 Score=19.80 Aligned_cols=41 Identities=10% Similarity=0.082 Sum_probs=31.2
Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHH
Q ss_conf 999999985-892389996158898888999998339899999
Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEA 67 (185)
Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreq 67 (185)
+.++|.+-+ +|-|++.||+.-|| +..|||++..+.+++-..
T Consensus 39 A~~l~~~~G~~~~T~~~IA~~aGv-s~~tlY~~F~~K~~L~~~ 80 (212)
T 2np3_A 39 ARVCFAERGFDATSLRRIAETAGV-DQSLVHHFYGTKENLFLQ 80 (212)
T ss_dssp HHHHC----------------------------CCC-CHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHH
T ss_conf 999999849130679999999781-975566878299999978
No 106
>3c57_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=55.41 E-value=7.6 Score=18.68 Aligned_cols=35 Identities=9% Similarity=0.149 Sum_probs=30.8
Q ss_pred HHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 999999998589238999615889888899999833
Q gi|254781188|r 25 LFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60 (185)
Q Consensus 25 iad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185)
---+|+..|+.|.|-+.|.+.-++ +..||-..+..
T Consensus 31 rE~evl~ll~~G~s~~eIA~~L~i-S~~TV~~~~~~ 65 (95)
T 3c57_A 31 QERTLLGLLSEGLTNKQIADRMFL-AEKTVKNYVSR 65 (95)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHH
T ss_conf 999999999907999999879497-89999999999
No 107
>3egq_A TETR family transcriptional regulator; NP_070644.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=55.15 E-value=11 Score=17.56 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHH
Q ss_conf 999999999985----8923899961588988889999983398999999
Q gi|254781188|r 23 PELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAY 68 (185)
Q Consensus 23 ~Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqY 68 (185)
.++.+.-...++ .|-|++.|++.-|| +.+|||.+..+.+++-...
T Consensus 7 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agv-s~~t~Y~~F~~K~~Ll~~~ 55 (170)
T 3egq_A 7 VRIIEAALRLYMKKPPHEVSIEEIAREAKV-SKSLIFYHFESKQKLLEEA 55 (170)
T ss_dssp HHHHHHHHHHHTTSCGGGCCHHHHHHHHTS-CHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CCCCCHHHCCCHHHHHHHH
T ss_conf 999999999999749240679999998489-9687064289999999999
No 108
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional activator, human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=55.10 E-value=11 Score=17.55 Aligned_cols=64 Identities=13% Similarity=0.027 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHH-HCCHHHHHHHHCCCCCCHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5899999999998-589238999615889888899999833----9899999999999737999999862
Q gi|254781188|r 21 YSPELFAGILDQV-ANGKALGHVLRKVGMPKYSTFYRWIKK----DLKLQEAYTEALQCRLDLLAEELLE 85 (185)
Q Consensus 21 Ys~Eiad~Ic~rI-A~GeSLr~ICkd~gMPs~sTV~rWL~k----deEfreqYa~Are~qaD~laEEILE 85 (185)
....+.+.|-... ..|.|...+++.-|+ +.+++.+|.+. +.+.-..++++...-.+.|+++...
T Consensus 25 ~~~~iG~rLk~~R~~~glSq~~lA~~~gi-s~~~ls~~E~g~~~ps~~~l~~ia~~l~v~~~~ll~~~~~ 93 (117)
T 3f52_A 25 LREALGAALRSFRADKGVTLRELAEASRV-SPGYLSELERGRKEVSSELLASVCHALGASVADVLIEAAG 93 (117)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHTTS-CHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCC
T ss_conf 99999999999999819999999988533-3999999986998999999999999989979999624442
No 109
>2ezk_A Transposase; DNA-binding protein, transposition, transposable element; NMR {Enterobacteria phage MU} SCOP: a.4.1.2 PDB: 2ezl_A
Probab=54.11 E-value=7.2 Score=18.85 Aligned_cols=40 Identities=13% Similarity=0.006 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHCCHHHH----HHHHCCCCCCHHHHHHHHHCCHHH
Q ss_conf 99999999985892389----996158898888999998339899
Q gi|254781188|r 24 ELFAGILDQVANGKALG----HVLRKVGMPKYSTFYRWIKKDLKL 64 (185)
Q Consensus 24 Eiad~Ic~rIA~GeSLr----~ICkd~gMPs~sTV~rWL~kdeEf 64 (185)
++.-.+-..+..|.+.. .||...|+ +.+|+|+|...-+.|
T Consensus 37 ~~l~~V~~L~~~G~~~~~A~~~vA~~~~v-s~~TL~nW~~~V~g~ 80 (99)
T 2ezk_A 37 PAVQAADEMLNQGISTKTAFATVAGHYQV-SASTLRDKYYQVQKF 80 (99)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHSCS-CHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHCC-CHHHHHHHHHHHCCC
T ss_conf 99999999998599589999999999698-899999999996899
No 110
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=52.50 E-value=12 Score=17.28 Aligned_cols=44 Identities=14% Similarity=0.221 Sum_probs=33.0
Q ss_pred HHHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf 9999999985-89238999615889888899999833989999999
Q gi|254781188|r 25 LFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYT 69 (185)
Q Consensus 25 iad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa 69 (185)
.+.++|..-+ +|-|++.||+.-|+ +.+|||.+..+.+++-....
T Consensus 22 aA~~lf~~~G~~~~si~~Ia~~agv-s~~t~Y~~F~sK~~L~~~v~ 66 (220)
T 3lhq_A 22 VALRLFSQQGVSATSLAEIANAAGV-TRGAIYWHFKNKSDLFSEIW 66 (220)
T ss_dssp HHHHHHHHHCSTTCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999749140659999999793-98899988699999999999
No 111
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, MCSG, PSI, protein structure initiative, midwest center for structural genomics; 2.30A {Rhodococcus SP}
Probab=51.79 E-value=5.2 Score=19.77 Aligned_cols=39 Identities=15% Similarity=0.086 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHH---CCHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf 8999999999985---892389996158898888999998339
Q gi|254781188|r 22 SPELFAGILDQVA---NGKALGHVLRKVGMPKYSTFYRWIKKD 61 (185)
Q Consensus 22 s~Eiad~Ic~rIA---~GeSLr~ICkd~gMPs~sTV~rWL~kd 61 (185)
+-+-+-.|++.++ .|.++..|++.-|+| .+|+++-|+.=
T Consensus 12 sl~Ral~IL~~~~~~~~~~~~~eia~~~gl~-~st~~RlL~tL 53 (257)
T 2g7u_A 12 SIERGFAVLLAFDAQRPNPTLAELATEAGLS-RPAVRRILLTL 53 (257)
T ss_dssp HHHHHHHHHHTCSSSCSSCBHHHHHHHHTCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC-HHHHHHHHHHH
T ss_conf 9999999999998479998999999987939-99999999999
No 112
>3dew_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=51.40 E-value=13 Score=17.17 Aligned_cols=45 Identities=16% Similarity=0.140 Sum_probs=35.0
Q ss_pred HHHHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf 99999999985-89238999615889888899999833989999999
Q gi|254781188|r 24 ELFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYT 69 (185)
Q Consensus 24 Eiad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa 69 (185)
+.+..+|.+-+ .|-|++.||+.-|+ +.+|||++..+.+++-....
T Consensus 15 ~aA~~lf~~~G~~~~s~~~IA~~agv-s~~tlY~yF~sKe~L~~av~ 60 (206)
T 3dew_A 15 EVATELFAQKGFYGVSIRELAQAAGA-SISMISYHFGGKEGLYAAVL 60 (206)
T ss_dssp HHHHHHHHHHCGGGCCHHHHHHHHTC-CHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHH
T ss_conf 99999999859241789999999695-98899888189999997778
No 113
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=51.36 E-value=9.2 Score=18.12 Aligned_cols=41 Identities=5% Similarity=0.161 Sum_probs=31.4
Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHH
Q ss_conf 999999985-892389996158898888999998339899999
Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEA 67 (185)
Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreq 67 (185)
+.++|..-+ .|-|++.|++.-|+ +.+|||....+.+++-..
T Consensus 14 A~~lf~~~G~~~~t~~~Ia~~agv-s~~tlY~~F~sKe~L~~a 55 (228)
T 3nnr_A 14 SLELFNDKGERNITTNHIAAHLAI-SPGNLYYHFRNKSDIIYE 55 (228)
T ss_dssp HHHHHHHHCGGGCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHH
T ss_conf 999999739352779999998890-998999887899999999
No 114
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=51.22 E-value=13 Score=17.15 Aligned_cols=42 Identities=7% Similarity=0.313 Sum_probs=31.8
Q ss_pred HHHHHHHHHH---H-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHH
Q ss_conf 9999999998---5-89238999615889888899999833989999
Q gi|254781188|r 24 ELFAGILDQV---A-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQE 66 (185)
Q Consensus 24 Eiad~Ic~rI---A-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfre 66 (185)
.+.+.-...+ + .|-|++.||+.-|+ +.+|||.+..+.+++-.
T Consensus 16 ~Il~aa~~l~~~~G~~~~s~~~Ia~~agv-s~~t~Y~~F~sK~~L~~ 61 (192)
T 2fq4_A 16 AILSASYELLLESGFKAVTVDKIAERAKV-SKATIYKWWPNKAAVVM 61 (192)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHTC-CHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHH
T ss_conf 99999999999839440779999999891-99888534789999999
No 115
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} SCOP: a.4.1.9 a.121.1.1 PDB: 3loc_A*
Probab=50.68 E-value=13 Score=17.09 Aligned_cols=46 Identities=15% Similarity=0.275 Sum_probs=33.6
Q ss_pred HHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf 99999999985----892389996158898888999998339899999999
Q gi|254781188|r 24 ELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE 70 (185)
Q Consensus 24 Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~ 70 (185)
++.+.-++.++ +|-|++.|++.-|+ +.+|||....+.+++-..+..
T Consensus 22 ~Il~aA~~lf~~~G~~~~si~~IA~~agv-s~~tiY~yF~sKe~L~~~~~~ 71 (212)
T 1pb6_A 22 AILSAALDTFSQFGFHGTRLEQIAELAGV-SKTNLLYYFPSKEALYIAVLR 71 (212)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHTTS-CHHHHHHHSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999999859152889999999791-987897877999999998789
No 116
>2obp_A Putative DNA-binding protein; YP_298295.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Ralstonia eutropha JMP134} SCOP: a.4.5.71
Probab=50.32 E-value=6.1 Score=19.33 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=19.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 23899961588988889999983
Q gi|254781188|r 37 KALGHVLRKVGMPKYSTFYRWIK 59 (185)
Q Consensus 37 eSLr~ICkd~gMPs~sTV~rWL~ 59 (185)
=||-+|||.-++| .||+.|-|-
T Consensus 37 wSLAkl~KRa~vp-MStLRR~LT 58 (96)
T 2obp_A 37 WSLPKIAKRAQLP-MSVLRRVLT 58 (96)
T ss_dssp CBHHHHHHHHTCC-HHHHHHHHH
T ss_pred CCHHHHHHHCCCC-HHHHHHHHH
T ss_conf 3399998770896-799999999
No 117
>1t56_A EThr repressor; helix-turn-helix, TETR family, dimer, transcription; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: a.4.1.9 a.121.1.1 PDB: 3g1m_A* 1u9n_A* 1u9o_A*
Probab=50.14 E-value=13 Score=17.04 Aligned_cols=61 Identities=13% Similarity=0.236 Sum_probs=39.6
Q ss_pred HHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999985----892389996158898888999998339899999999999737999999862
Q gi|254781188|r 24 ELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85 (185)
Q Consensus 24 Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE 85 (185)
.+.+.-.+.++ +|-|++.||+.-|+ +.+|||.+....+++-......-..+.....+.+++
T Consensus 28 ~Il~aA~~l~~~~G~~~~ti~~IA~~agv-s~~tlY~yF~sK~~L~~~~~~~~~~~~~~~~~~~~~ 92 (216)
T 1t56_A 28 AILATAENLLEDRPLADISVDDLAKGAGI-SRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAE 92 (216)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHCCC-CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999709240789999988399-999995763987899999999999999999999862
No 118
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=49.79 E-value=14 Score=17.00 Aligned_cols=38 Identities=11% Similarity=0.052 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHCCH--------HHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 8999999999985892--------38999615889888899999833
Q gi|254781188|r 22 SPELFAGILDQVANGK--------ALGHVLRKVGMPKYSTFYRWIKK 60 (185)
Q Consensus 22 s~Eiad~Ic~rIA~Ge--------SLr~ICkd~gMPs~sTV~rWL~k 60 (185)
-..+++.|.+.|.+|. |-+.+|...|+ |..||.+-++.
T Consensus 6 Y~qI~~~I~~~I~~g~~~pG~~LPse~~La~~~gV-Sr~tVR~Al~~ 51 (129)
T 2ek5_A 6 YKQIASLIEDSIVDGTLSIDQRVPSTNELAAFHRI-NPATARNGLTL 51 (129)
T ss_dssp HHHHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC-CHHHHHHHHHH
T ss_conf 99999999999985999996998789999989299-99999999999
No 119
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=49.42 E-value=14 Score=16.97 Aligned_cols=59 Identities=10% Similarity=0.054 Sum_probs=41.1
Q ss_pred HHHHHHH-HHHHCCHHHHHHHHCCCCCCHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999-9985892389996158898888999998339----8999999999997379999998
Q gi|254781188|r 24 ELFAGIL-DQVANGKALGHVLRKVGMPKYSTFYRWIKKD----LKLQEAYTEALQCRLDLLAEEL 83 (185)
Q Consensus 24 Eiad~Ic-~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd----eEfreqYa~Are~qaD~laEEI 83 (185)
.+...|= .|...|.|...+++.-|+ +.+|+.+|.+.. .+.-.+++++...-.+.|+++.
T Consensus 10 ~ig~~ir~~R~~~gltq~~lA~~~gv-s~~~i~~~E~g~~~ps~~~l~~la~~l~v~~~~l~~~~ 73 (77)
T 2b5a_A 10 KFGRTLKKIRTQKGVSQEELADLAGL-HRTYISEVERGDRNISLINIHKICAALDIPASTFFRKM 73 (77)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCC
T ss_conf 99999999999819999999989796-99999999879989999999999999798899985432
No 120
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=49.38 E-value=14 Score=16.96 Aligned_cols=62 Identities=13% Similarity=0.088 Sum_probs=45.1
Q ss_pred HHHHHHHH-HHHHCCHHHHHHHHCCCCCCHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999-9985892389996158898888999998339----899999999999737999999862
Q gi|254781188|r 23 PELFAGIL-DQVANGKALGHVLRKVGMPKYSTFYRWIKKD----LKLQEAYTEALQCRLDLLAEELLE 85 (185)
Q Consensus 23 ~Eiad~Ic-~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd----eEfreqYa~Are~qaD~laEEILE 85 (185)
..+...|= .|...|.|+..+.+.-|+ +.+++.+|-+.. .+.-.+++.|.....+.+++...+
T Consensus 27 ~~ig~~Ik~lR~~~glsq~elA~~~gi-s~~~is~iE~G~~~ps~~~l~~ia~~l~v~~~~l~~~~~~ 93 (99)
T 3g5g_A 27 SKVSFVIKKIRLEKGMTQEDLAYKSNL-DRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIK 93 (99)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCHH
T ss_conf 999999999999819999999999797-8988999986998999999999999969989999761488
No 121
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=48.70 E-value=12 Score=17.32 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=26.1
Q ss_pred HHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCH
Q ss_conf 999985-8923899961588988889999983398
Q gi|254781188|r 29 ILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDL 62 (185)
Q Consensus 29 Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kde 62 (185)
|..-|. .|-.+.+.++..|| +..|||++|+++.
T Consensus 46 I~~aL~~~~GN~s~AAr~LGI-sR~TLyrklkky~ 79 (81)
T 1umq_A 46 IQRIYEMCDRNVSETARRLNM-HRRTLQRILAKRS 79 (81)
T ss_dssp HHHHHHHTTSCHHHHHHHHTS-CHHHHHHHHHTSS
T ss_pred HHHHHHHHHCCHHHHHHHHCC-CHHHHHHHHHHCC
T ss_conf 999999972779999999798-9999999999728
No 122
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=48.41 E-value=8.3 Score=18.42 Aligned_cols=39 Identities=10% Similarity=0.152 Sum_probs=30.4
Q ss_pred HHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHH
Q ss_conf 9999985-892389996158898888999998339899999
Q gi|254781188|r 28 GILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEA 67 (185)
Q Consensus 28 ~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreq 67 (185)
+++..-+ +|-|++.||+.-|+ +.+|||++..+.+++-..
T Consensus 25 ~l~~~~G~~~~s~~~Ia~~agv-s~~tlY~~F~sK~~Ll~~ 64 (156)
T 3ljl_A 25 DQLLRLGYDKMSYTTLSQQTGV-SRTGISHHFPKKTDFTAA 64 (156)
T ss_dssp HHHHHTHHHHCCHHHHHHHHTC-CHHHHHHHCSSTHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHH
T ss_conf 9998719030779999998698-886998987799999999
No 123
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal domain, homeodomain-like; 1.55A {Aquifex aeolicus VF5}
Probab=48.13 E-value=14 Score=16.84 Aligned_cols=43 Identities=12% Similarity=0.284 Sum_probs=33.0
Q ss_pred HHHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHH
Q ss_conf 9999999985-8923899961588988889999983398999999
Q gi|254781188|r 25 LFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAY 68 (185)
Q Consensus 25 iad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqY 68 (185)
.+.+++..-+ +|-|++.||+.-|+ +.+|||....+.+++-...
T Consensus 10 aa~~l~~~~G~~~~t~~~Ia~~agv-s~~tiY~~F~~K~~L~~a~ 53 (179)
T 2eh3_A 10 VSKELFFEKGYQGTSVEEIVKRANL-SKGAFYFHFKSKEELITEI 53 (179)
T ss_dssp HHHHHHHHHCSTTCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCC-CCCCHHHHCCCHHHHHHHH
T ss_conf 9999999739250769999998784-9652144289999999999
No 124
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=47.91 E-value=6.5 Score=19.14 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.5
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 38999615889888899999833
Q gi|254781188|r 38 ALGHVLRKVGMPKYSTFYRWIKK 60 (185)
Q Consensus 38 SLr~ICkd~gMPs~sTV~rWL~k 60 (185)
.++.||...|+ |.+|+|+|+++
T Consensus 12 r~keV~~~~gl-srstiy~~i~~ 33 (66)
T 1z4h_A 12 DLKFIMADTGF-GKTFIYDRIKS 33 (66)
T ss_dssp CHHHHHHHHSS-CHHHHHHHHHH
T ss_pred CHHHHHHHHCC-CHHHHHHHHHC
T ss_conf 49999999897-99999999987
No 125
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=46.16 E-value=15 Score=16.64 Aligned_cols=51 Identities=12% Similarity=0.242 Sum_probs=39.0
Q ss_pred HCCCCCCCCCCCHHHHHHHH---HHHH------CCHHHHHHHHCCCCCCHHHHHHHHHCCH
Q ss_conf 02465676445899999999---9985------8923899961588988889999983398
Q gi|254781188|r 11 AVRAKKGCIYYSPELFAGIL---DQVA------NGKALGHVLRKVGMPKYSTFYRWIKKDL 62 (185)
Q Consensus 11 a~R~Kk~~i~Ys~Eiad~Ic---~rIA------~GeSLr~ICkd~gMPs~sTV~rWL~kde 62 (185)
.+..|+-.++||+|--+..+ ++++ +-..+...|.+.|+. ..+|--||+.+.
T Consensus 14 ~~~~KRfRTKFt~eQKekM~~fAEklGWriqk~de~~V~~FC~eiGV~-r~V~KvWMHNnK 73 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVR-RQVLKIWMHNNK 73 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHHHHHHHHTSCCCSSTTHHHHHHHHHSCCC-HHHHHHHHHTTS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHCCC-CCEEEEEEECCC
T ss_conf 766665534479999999999999838812146599999999984978-553677343575
No 126
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Rhodococcus SP}
Probab=45.91 E-value=10 Score=17.84 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHC---CHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 89999999999858---9238999615889888899999833
Q gi|254781188|r 22 SPELFAGILDQVAN---GKALGHVLRKVGMPKYSTFYRWIKK 60 (185)
Q Consensus 22 s~Eiad~Ic~rIA~---GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185)
+=+-+-.|++.|+. |.++..|++.-|+| .+|+++-|+.
T Consensus 19 sl~Ral~ILe~la~~~~~lsl~eia~~l~l~-kst~~RlL~t 59 (265)
T 2ia2_A 19 SLARGLAVIRCFDHRNQRRTLSDVARATDLT-RATARRFLLT 59 (265)
T ss_dssp HHHHHHHHHHTCCSSCSSEEHHHHHHHHTCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC-HHHHHHHHHH
T ss_conf 9999999999997379997999999997949-9999999999
No 127
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor A3}
Probab=45.82 E-value=11 Score=17.55 Aligned_cols=41 Identities=10% Similarity=0.340 Sum_probs=30.6
Q ss_pred HHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHH
Q ss_conf 99999999985----8923899961588988889999983398999
Q gi|254781188|r 24 ELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQ 65 (185)
Q Consensus 24 Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfr 65 (185)
.+.+.-.+.++ +|-|++.||+.-|+ +.+|||+.....+++-
T Consensus 11 ~Il~AA~~l~~~~G~~~~tl~~IA~~agv-s~~t~Y~~F~sKe~L~ 55 (195)
T 2dg7_A 11 RLKRAALELYSEHGYDNVTVTDIAERAGL-TRRSYFRYFPDKREVL 55 (195)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHTTC-CHHHHHHHCSSTTGGG
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHH
T ss_conf 99999999999859040669999999790-9889977779999999
No 128
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, protein structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=45.31 E-value=12 Score=17.28 Aligned_cols=31 Identities=13% Similarity=0.215 Sum_probs=21.2
Q ss_pred HHHHHHHCCHHHHHHHHCCCCCCHHHHH---HHHH
Q ss_conf 9999985892389996158898888999---9983
Q gi|254781188|r 28 GILDQVANGKALGHVLRKVGMPKYSTFY---RWIK 59 (185)
Q Consensus 28 ~Ic~rIA~GeSLr~ICkd~gMPs~sTV~---rWL~ 59 (185)
+|...|..|.|-++|....|+ |.+|+- +||+
T Consensus 50 ~va~lL~~g~syreIa~~~gv-S~aTIsRv~r~L~ 83 (107)
T 3frw_A 50 EVAKMLTDKRTYLDISEKTGA-STATISRVNRSLN 83 (107)
T ss_dssp HHHHHHHTTCCHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHHHH
T ss_conf 999998869999999999698-7475899999988
No 129
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural genomics, DNA-binding protein, PSI-2; 2.30A {Agrobacterium tumefaciens str}
Probab=45.29 E-value=9 Score=18.17 Aligned_cols=41 Identities=10% Similarity=0.125 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCH
Q ss_conf 4589999999999858923899961588988889999983398
Q gi|254781188|r 20 YYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDL 62 (185)
Q Consensus 20 ~Ys~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kde 62 (185)
.+.+... ++|..|++-.|+++.++.-|| +++++++.|+.=+
T Consensus 23 ~~~~~~~-~ll~aV~~~GSit~AA~~L~i-Sq~avs~~i~~LE 63 (135)
T 2ijl_A 23 RLGHGKV-ELMQLIAETGSISAAGRAMDM-SYRRAWLLVDALN 63 (135)
T ss_dssp EESHHHH-HHHHHHHHHSCHHHHHHHTTC-CHHHHHHHHHHHH
T ss_pred CCCHHHH-HHHHHHHHHCCHHHHHHHHCC-CHHHHHHHHHHHH
T ss_conf 5497899-999999996999999999788-9889999999999
No 130
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=45.01 E-value=14 Score=16.93 Aligned_cols=27 Identities=4% Similarity=-0.098 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 997999988999998764665343420
Q gi|254781188|r 102 KMRDRKQRMGTFLLEKLSNQKYGPRVS 128 (185)
Q Consensus 102 ~lr~~~~~~~~w~l~k~~p~~yg~rvs 128 (185)
.|..+.+-++.|+..-+.++--+....
T Consensus 175 ~LT~RE~evL~l~a~G~t~~eIA~~L~ 201 (236)
T 2q0o_A 175 MLSPREMLCLVWASKGKTASVTANLTG 201 (236)
T ss_dssp SCCHHHHHHHHHHHTTCCHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHC
T ss_conf 399879999999866999999999969
No 131
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=44.57 E-value=16 Score=16.48 Aligned_cols=43 Identities=7% Similarity=0.167 Sum_probs=31.8
Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf 999999985-89238999615889888899999833989999999
Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYT 69 (185)
Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa 69 (185)
+..+|..-+ ++-|++.|++.-|+ +.+|||.+....+++-....
T Consensus 16 A~~lf~e~G~~~~s~~~IA~~AGv-s~~~iy~yF~sK~~L~~a~~ 59 (213)
T 3ni7_A 16 AVELAAHTSWEAVRLYDIAARLAV-SLDEIRLYFREKDELIDAWF 59 (213)
T ss_dssp HHHHHHHSCSTTCCHHHHHHHTTS-CHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHCC-CHHHHHHHCCCCCCHHHHHH
T ss_conf 999999869768789999999099-99999874699752168998
No 132
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, protein structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=44.38 E-value=15 Score=16.65 Aligned_cols=45 Identities=11% Similarity=0.148 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHH
Q ss_conf 999999999985----8923899961588988889999983398999999
Q gi|254781188|r 23 PELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAY 68 (185)
Q Consensus 23 ~Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqY 68 (185)
..+.+.-++.++ +|-|++.||+.-|+ +.+|||++..+.+++-...
T Consensus 42 ~~Il~AA~~l~~e~G~~~~T~~~Ia~~AGv-s~~t~Y~~F~~K~~Ll~av 90 (214)
T 2guh_A 42 SLIVDAAGRAFATRPYREITLKDIAEDAGV-SAPLIIKYFGSKEQLFDAL 90 (214)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHHTS-CHHHHHHHHSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHH
T ss_conf 999999999999839240779999999791-9879999878899999999
No 133
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=44.35 E-value=16 Score=16.46 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=14.8
Q ss_pred HHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 99999858923899961588988889999983
Q gi|254781188|r 28 GILDQVANGKALGHVLRKVGMPKYSTFYRWIK 59 (185)
Q Consensus 28 ~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~ 59 (185)
+|+..++.|.|-+.|.+.-++ |..||...+.
T Consensus 166 eVL~ll~~G~snkeIA~~L~i-S~~TVk~h~~ 196 (225)
T 3klo_A 166 QIIKLLGSGASNIEIADKLFV-SENTVKTHLH 196 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHTTC-CHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHH
T ss_conf 430355339979999999788-9999999999
No 134
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=44.23 E-value=16 Score=16.44 Aligned_cols=41 Identities=12% Similarity=0.014 Sum_probs=31.0
Q ss_pred HHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf 999985-892389996158898888999998339899999999
Q gi|254781188|r 29 ILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE 70 (185)
Q Consensus 29 Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~ 70 (185)
+|..-+ +|-|++.|++.-|+ +..|||++..+.+++-....+
T Consensus 40 l~~~~G~~~~t~~~IA~~aGv-s~~tlY~~F~sKe~L~~a~~~ 81 (217)
T 3hta_A 40 VVGQKGIAGLSHRTVAAEADV-PLGSTTYHFATLDDLMVAALR 81 (217)
T ss_dssp HHHHHTGGGCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHH
T ss_conf 999859040779999999488-831487616999999999999
No 135
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=44.16 E-value=14 Score=16.95 Aligned_cols=30 Identities=10% Similarity=0.216 Sum_probs=27.2
Q ss_pred HCCHHHHHHHHCCCCCCHHHHHHHHHCCHHH
Q ss_conf 5892389996158898888999998339899
Q gi|254781188|r 34 ANGKALGHVLRKVGMPKYSTFYRWIKKDLKL 64 (185)
Q Consensus 34 A~GeSLr~ICkd~gMPs~sTV~rWL~kdeEf 64 (185)
-.|-|++.||+.-|+ +.+|||.+..+.+++
T Consensus 66 ~~~vS~~~IA~~AGV-S~~t~Y~~F~sK~~L 95 (260)
T 2of7_A 66 YEATTVEQIAERAEV-SPSTVLRYFPTREDI 95 (260)
T ss_dssp STTCCHHHHHHHHTS-CHHHHHHHCSSHHHH
T ss_pred CCCCCHHHHHHHHCC-CHHHHHHHCCCHHHH
T ss_conf 452879999999696-797999985999999
No 136
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=44.16 E-value=15 Score=16.78 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 9999999998589238999615889888899999833
Q gi|254781188|r 24 ELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60 (185)
Q Consensus 24 Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~k 60 (185)
.---+|+..++.|.|-..|+..-++ |..||-..+..
T Consensus 200 ~re~~il~~~~~G~~~~eia~~l~i-s~~tv~~h~~~ 235 (258)
T 3clo_A 200 EREKEILRCIRKGLSSKEIAATLYI-SVNTVNRHRQN 235 (258)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHH
T ss_conf 8999999999859999999989499-99999999999
No 137
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=43.96 E-value=11 Score=17.57 Aligned_cols=34 Identities=21% Similarity=0.182 Sum_probs=22.7
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999998339899999999999737999999862
Q gi|254781188|r 52 STFYRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85 (185)
Q Consensus 52 sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE 85 (185)
.++...+.+.+++..++-+.+..=+|++..++-+
T Consensus 12 ~~~~~~~d~~~~~~~r~P~lL~eL~d~~~~~l~~ 45 (129)
T 1rr7_A 12 DTILAHLDNPAEDTSRFPALLAELNDLLRGELSR 45 (129)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5299983586667877479999999999999998
No 138
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural genomics, PSI-2, protein structure initiative; 2.09A {Listeria innocua}
Probab=42.98 E-value=17 Score=16.32 Aligned_cols=37 Identities=11% Similarity=0.046 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHCCH--------HHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 999999999985892--------38999615889888899999833
Q gi|254781188|r 23 PELFAGILDQVANGK--------ALGHVLRKVGMPKYSTFYRWIKK 60 (185)
Q Consensus 23 ~Eiad~Ic~rIA~Ge--------SLr~ICkd~gMPs~sTV~rWL~k 60 (185)
.++++.|.+.|.+|+ |-+.+|...|+ |..||.+-|..
T Consensus 12 ~qi~~~i~~~I~~G~~~~G~~LPsE~eLa~~~~V-Sr~TvR~Al~~ 56 (236)
T 3edp_A 12 EVIASKIKDSINRDEYKTGMLMPNETALQEIYSS-SRTTIRRAVDL 56 (236)
T ss_dssp HHHHHHHHHHHHTTSSCCCC--CCHHHHHHHTTC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC-CHHHHHHHHHH
T ss_conf 9999999999981999991999279999999795-99999999999
No 139
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.5
Probab=42.85 E-value=17 Score=16.35 Aligned_cols=10 Identities=40% Similarity=0.458 Sum_probs=4.5
Q ss_pred HHHHHHHCCC
Q ss_conf 9998641041
Q gi|254781188|r 144 LREHYKHLKP 153 (185)
Q Consensus 144 ~~~~~~~~k~ 153 (185)
+.+|++-|+.
T Consensus 60 vs~HL~~L~~ 69 (96)
T 1y0u_A 60 LDYHLKVLEA 69 (96)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999998
No 140
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3
Probab=42.07 E-value=18 Score=16.23 Aligned_cols=49 Identities=16% Similarity=0.287 Sum_probs=39.3
Q ss_pred HHHCCHHHHHHHHCCCCCCHHHHHHHHHC---C--HHHHHHHHHHHHHHHHHHHH
Q ss_conf 98589238999615889888899999833---9--89999999999973799999
Q gi|254781188|r 32 QVANGKALGHVLRKVGMPKYSTFYRWIKK---D--LKLQEAYTEALQCRLDLLAE 81 (185)
Q Consensus 32 rIA~GeSLr~ICkd~gMPs~sTV~rWL~k---d--eEfreqYa~Are~qaD~laE 81 (185)
|-..|.|...+++.-|+ +.+|+.+|.+- . .+.-.+.+.+...-.+.|++
T Consensus 10 R~~~g~tq~~lA~~~Gv-s~~~is~~E~G~~~~p~~~~l~~ia~~l~v~~~~l~~ 63 (111)
T 1b0n_A 10 RKEKGYSLSELAEKAGV-AKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLD 63 (111)
T ss_dssp HHHTTCCHHHHHHHHTC-CHHHHHHHHTTCCSCCCHHHHHHHHHHHTCCHHHHHC
T ss_pred HHHCCCCHHHHHHHHCC-CHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHC
T ss_conf 99839999999878498-8999999987998999999999999998987999848
No 141
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A*
Probab=41.38 E-value=18 Score=16.16 Aligned_cols=44 Identities=9% Similarity=0.165 Sum_probs=32.6
Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf 999999985-892389996158898888999998339899999999
Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE 70 (185)
Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~ 70 (185)
+-.+|..-+ +|-|++.||+.-|+ +.+|||....+.+++-.....
T Consensus 14 A~~l~~~~G~~~~s~~~Ia~~agv-s~~t~Y~~F~sK~~L~~~~~~ 58 (202)
T 2id6_A 14 AVEVFGKKGYDRATTDEIAEKAGV-AKGLIFHYFKNKEELYYQAYM 58 (202)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHTC-CTHHHHHHHSSHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHCCCCHHHHHHHHHH
T ss_conf 999998729041649999998790-999998408999999999999
No 142
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=40.69 E-value=19 Score=16.09 Aligned_cols=46 Identities=9% Similarity=0.225 Sum_probs=33.4
Q ss_pred HHHHHHH---HHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf 9999999---99985-89238999615889888899999833989999999
Q gi|254781188|r 23 PELFAGI---LDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYT 69 (185)
Q Consensus 23 ~Eiad~I---c~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa 69 (185)
.+|.+.- |..-+ .|-|++.||+.-|+ +.+|||+...+.+++-..+.
T Consensus 33 ~~il~AA~~lf~~~G~~~~T~~~IA~~aGv-s~~tlY~~F~~K~~Ll~a~~ 82 (226)
T 2pz9_A 33 QRIVAAAKEEFARHGIAGARVDRIAKQART-SKERVYAYFRSKEALYAHVA 82 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHTTS-CHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHH
T ss_conf 999999999999859241889999999693-87579788599999999999
No 143
>2vke_A Tetracycline repressor protein class D; transcription, metal-binding, helix-turn-helix, transcription regulator, transcription regulation; HET: TAC; 1.62A {Escherichia coli} SCOP: a.4.1.9 a.121.1.1 PDB: 1bjy_A* 1bj0_A 1du7_A* 1ork_A* 2fj1_A* 1bjz_A* 2o7o_A* 2tct_A* 2trt_A* 1qpi_A* 1a6i_A 2vkv_A* 3fk7_A* 3fk6_A* 2ns7_A 2ns8_A
Probab=39.86 E-value=19 Score=16.00 Aligned_cols=41 Identities=22% Similarity=0.416 Sum_probs=31.7
Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHH
Q ss_conf 999999985-892389996158898888999998339899999
Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEA 67 (185)
Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreq 67 (185)
+-.+|..-+ +|-|++.|++.-|| +.+|||....+.+++-..
T Consensus 12 A~~lf~~~G~~~~tv~~IA~~aGv-s~~tlY~hF~sKe~L~~a 53 (207)
T 2vke_A 12 ALELLNETGIDGLTTRKLAQKLGI-EQPTLYWHVKNKRALLDA 53 (207)
T ss_dssp HHHHHHHHCGGGCCHHHHHHHHTC-CHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHH
T ss_conf 999999749141789999999791-976998878998999999
No 144
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=39.58 E-value=19 Score=15.98 Aligned_cols=42 Identities=12% Similarity=0.294 Sum_probs=32.2
Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHH
Q ss_conf 999999985-8923899961588988889999983398999999
Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAY 68 (185)
Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqY 68 (185)
+-.+|.+-+ +|-|++.|++.-|+ +.+|||++....+++-...
T Consensus 11 A~~l~~~~G~~~~T~~~IA~~aGv-s~~tlY~~F~sK~~L~~a~ 53 (209)
T 3bqy_A 11 ALDLLNESGLDTLTMRRLAQAMDV-QAGALYRYFAAKQDLLTAM 53 (209)
T ss_dssp HHHHHHHHCGGGCCHHHHHHHHTS-CHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHH
T ss_conf 999999729451679999999794-8879998879989999999
No 145
>3jsj_A Putative TETR-family transcriptional regulator; NP_821317.1, putative transcriptional regulator, structural genomics; 2.10A {Streptomyces avermitilis ma-4680}
Probab=39.41 E-value=19 Score=15.96 Aligned_cols=58 Identities=16% Similarity=0.214 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999985892389996158898888999998339899999999999737999999862
Q gi|254781188|r 24 ELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85 (185)
Q Consensus 24 Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE 85 (185)
+.+..++.+-+-|-|++.||+.-|+ +.+|||+...+.+++-. .+.+...+.+.+++.+
T Consensus 16 ~aa~~l~~~~G~~~t~~~IA~~agv-s~~tlY~~F~sK~~L~~---~~~~~~~~~~~~~~~~ 73 (190)
T 3jsj_A 16 EAAAALTYRDGVGIGVEALCKAAGV-SKRSMYQLFESKDELLA---ASLKERSAAFVAKALP 73 (190)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTC-CHHHHHHHCSCHHHHHH---HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHH---HHHHHHHHHHHHHHHH
T ss_conf 9999999976978879999999790-99999677499999999---9999999999999999
No 146
>1utx_A CYLR2; DNA-binding protein, transcriptional repressor, regulation of cytolysin operon, helix-turn-helix; 1.90A {Enterococcus faecalis} SCOP: a.35.1.3 PDB: 2gzu_A
Probab=39.26 E-value=20 Score=15.94 Aligned_cols=46 Identities=11% Similarity=-0.010 Sum_probs=32.1
Q ss_pred HHHHCCHHHHHHHHCCCCCCHHHHHHHHHCC--H--HHHHHHHHHHHHHHH
Q ss_conf 9985892389996158898888999998339--8--999999999997379
Q gi|254781188|r 31 DQVANGKALGHVLRKVGMPKYSTFYRWIKKD--L--KLQEAYTEALQCRLD 77 (185)
Q Consensus 31 ~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd--e--EfreqYa~Are~qaD 77 (185)
.|...|.|...+++.-|+ +.+|+.+|.+.. + +.-.+.+++.....+
T Consensus 9 lR~~~g~tq~~lA~~~gi-s~~~is~~e~g~~~ps~~~l~~ia~~l~v~~~ 58 (66)
T 1utx_A 9 IREKKKISQSELAALLEV-SRQTINGIEKNKYNPSLQLALKIAYYLNTPLE 58 (66)
T ss_dssp HHHHTTCCHHHHHHHHTS-CHHHHHHHHTTSCCCCHHHHHHHHHHTTSCHH
T ss_pred HHHHCCCCHHHHHHHCCC-CHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHH
T ss_conf 999849999999887299-89999999879989999999999999897799
No 147
>3c3w_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 2.20A {Mycobacterium tuberculosis}
Probab=38.79 E-value=20 Score=15.90 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 997999988999998764665343420
Q gi|254781188|r 102 KMRDRKQRMGTFLLEKLSNQKYGPRVS 128 (185)
Q Consensus 102 ~lr~~~~~~~~w~l~k~~p~~yg~rvs 128 (185)
.|..+.+.++.++..-+.++--+.+..
T Consensus 149 ~LT~RE~eVL~ll~~G~snkeIA~~L~ 175 (225)
T 3c3w_A 149 GLTDQERTLLGLLSEGLTNKQIADRMF 175 (225)
T ss_dssp TSCHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHC
T ss_conf 799999999999993898889999978
No 148
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=38.58 E-value=20 Score=15.87 Aligned_cols=58 Identities=14% Similarity=0.322 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999985----89238999615889888899999833989999999999973799999986
Q gi|254781188|r 23 PELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELL 84 (185)
Q Consensus 23 ~Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEIL 84 (185)
+++.+.-...++ +|-|++.||+.-|+ +.+|||.+..+.+++-... .....+.+.+.+.
T Consensus 13 ~~Il~aa~~l~~~~G~~~~s~~~IA~~agv-s~~t~Y~~F~~K~~L~~~~---~~~~~~~~~~~~~ 74 (197)
T 2f07_A 13 EKILQAAIEVISEKGLDKASISDIVKKAGT-AQGTFYLYFSSKNALIPAI---AENLLTHTLDQIK 74 (197)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHTS-CHHHHHHHCSSSTTHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CCCHHHHHCCCHHHHHHHH---HHHHHHHHHHHHH
T ss_conf 999999999999739140769999998786-9115888649999999999---9999999999999
No 149
>1t33_A Putative transcriptional repressor (TETR/ACRR family); structural genomics, TETR/CCRR family, helix turn helix DNA binding domain; 2.20A {Salmonella typhimurium LT2} SCOP: a.4.1.9 a.121.1.1
Probab=37.67 E-value=21 Score=15.78 Aligned_cols=45 Identities=7% Similarity=-0.003 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf 9999999998589238999615889888899999833989999999
Q gi|254781188|r 24 ELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYT 69 (185)
Q Consensus 24 Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa 69 (185)
+.+-.+|..-+-..|++.|++.-|| |.+|||++..+.+++-....
T Consensus 19 ~aA~~lf~~~G~~~T~~~IA~~aGv-s~~~iY~~F~sKe~L~~~v~ 63 (224)
T 1t33_A 19 AAALAQFGEYGLHATTRDIAALAGQ-NIAAITYYFGSKEDLYLACA 63 (224)
T ss_dssp HHHHHHHHHHGGGSCHHHHHHHHTS-CHHHHHHHHSSHHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHCC-CCCCCCCCCCCHHHHHHHHH
T ss_conf 9999999987927579999998099-80212357899999999999
No 150
>3clc_A Regulatory protein; protein-DNA complex, transcriptional regulator, helix-turn- helix, DNA-bending, plasmid, transcription regulator/DNA complex; 2.80A {Enterobacter SP}
Probab=37.60 E-value=21 Score=15.78 Aligned_cols=63 Identities=13% Similarity=0.075 Sum_probs=43.2
Q ss_pred CHHHHHHHH-HHHHCCHHHHHHHHCCCCCCHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899999999-9985892389996158898888999998339----899999999999737999999862
Q gi|254781188|r 22 SPELFAGIL-DQVANGKALGHVLRKVGMPKYSTFYRWIKKD----LKLQEAYTEALQCRLDLLAEELLE 85 (185)
Q Consensus 22 s~Eiad~Ic-~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd----eEfreqYa~Are~qaD~laEEILE 85 (185)
..++...|= .|...|.|...+.+.-|+ +.+|+.+|-+.. -+.-..++++.....+.+++...+
T Consensus 9 ~~~i~~~lk~~R~~~glsq~~lA~~~gi-s~~~i~~~E~G~~~ps~~~l~~la~~l~i~~~~l~~~~~~ 76 (82)
T 3clc_A 9 LSKVSFVIKKIRLEKGMTQEDLAYKSNL-DRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIK 76 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTS-CHHHHHHHHTTCCCCBHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHCCCC-CHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCHH
T ss_conf 9999999999999839999999570399-8879999985998999999999999979889999770688
No 151
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=37.46 E-value=21 Score=15.76 Aligned_cols=57 Identities=9% Similarity=0.059 Sum_probs=38.2
Q ss_pred HHHHHHHHHHH-HCCHHHHHHHHCCCCCCHHHHHHHHHC---CHH--HHHHHHHHHHHHHHHHH
Q ss_conf 99999999998-589238999615889888899999833---989--99999999997379999
Q gi|254781188|r 23 PELFAGILDQV-ANGKALGHVLRKVGMPKYSTFYRWIKK---DLK--LQEAYTEALQCRLDLLA 80 (185)
Q Consensus 23 ~Eiad~Ic~rI-A~GeSLr~ICkd~gMPs~sTV~rWL~k---deE--freqYa~Are~qaD~la 80 (185)
..+...|-... ..|.|...+++.-|+ +.+|+.+|.+. +|. .-.+.+.|.....+.|+
T Consensus 6 ~~i~~ri~~lr~~~gls~~~LA~~~Gi-s~~tis~~e~g~~~~p~~~~l~kia~~l~v~~~~l~ 68 (78)
T 3b7h_A 6 EFVSEHLMELITQQNLTINRVATLAGL-NQSTVNAMFEGRSKRPTITTIRKVCGTLGISVHDFF 68 (78)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHCTTCCCCCHHHHHHHHHHHTCCHHHHT
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHC
T ss_conf 999999999999939989999998893-999999998699889689999999999899399990
No 152
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional repressor; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=37.09 E-value=21 Score=15.72 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=31.2
Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHH
Q ss_conf 999999985-89238999615889888899999833989999
Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQE 66 (185)
Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfre 66 (185)
+-.+|..-+ +|-|++.|++.-|+ +.+|||++..+.+++-.
T Consensus 15 A~~lf~~~G~~~~T~~~IA~~aGV-s~~~lY~hF~sK~~L~~ 55 (234)
T 2opt_A 15 ALGILDAEGLDALSMRRLAQELKT-GHASLYAHVGNRDELLD 55 (234)
T ss_dssp HHHHHHHHCGGGCCHHHHHHHHTC-CHHHHHHHHCSHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHH
T ss_conf 999999729442789999999785-88899998798899999
No 153
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=36.89 E-value=19 Score=16.02 Aligned_cols=49 Identities=16% Similarity=0.220 Sum_probs=34.3
Q ss_pred HHHCCHHHHHHHHCCCCCCHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHHH
Q ss_conf 985892389996158898888999998339---89999999999973799999
Q gi|254781188|r 32 QVANGKALGHVLRKVGMPKYSTFYRWIKKD---LKLQEAYTEALQCRLDLLAE 81 (185)
Q Consensus 32 rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd---eEfreqYa~Are~qaD~laE 81 (185)
|...|.|...+++.-|+ +.+|+.+|.+.. .+.-.+.+++.....+.|+.
T Consensus 10 R~~~gltq~elA~~~gi-s~~~~~~~e~g~~~~~~~l~~ia~~l~v~~~~l~~ 61 (69)
T 1r69_A 10 RIQLGLNQAELAQKVGT-TQQSIEQLENGKTKRPRFLPELASALGVSVDWLLN 61 (69)
T ss_dssp HHHTTCCHHHHHHHHTS-CHHHHHHHHTTSCSSCTTHHHHHHHTTCCHHHHHH
T ss_pred HHHCCCCHHHHHHHCCC-CHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHC
T ss_conf 99949999999886398-99999999869998999999999996988999828
No 154
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn- helix motif; 3.00A {Mycobacterium tuberculosis H37RV}
Probab=36.67 E-value=21 Score=15.68 Aligned_cols=41 Identities=12% Similarity=0.124 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf 458999999999985892389996158898888999998339
Q gi|254781188|r 20 YYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKD 61 (185)
Q Consensus 20 ~Ys~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd 61 (185)
..++.-.+-|..+.-.|.|...|+..-|+| .+||..++..-
T Consensus 15 ~Lp~~~r~v~~l~~~~g~s~~EIA~~lgis-~~tvk~~l~Ra 55 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLGLSYADAAAVCGCP-VGTIRSRVARA 55 (70)
T ss_dssp SSCHHHHHHHHHHHTSCCCHHHHHHHHTSC-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHCCC-HHHHHHHHHHH
T ss_conf 699999999998999099999999998979-99999999999
No 155
>2iu5_A DHAS, hypothetical protein YCEG; synthase, activator, TETR family, dihydroxyacetone; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=36.64 E-value=10 Score=17.76 Aligned_cols=43 Identities=12% Similarity=0.300 Sum_probs=31.4
Q ss_pred HHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHH
Q ss_conf 9999999985----8923899961588988889999983398999999
Q gi|254781188|r 25 LFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAY 68 (185)
Q Consensus 25 iad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqY 68 (185)
+.+.-.+.+. .+-|++.||+.-|+ +.+|||..-.+.+++-..+
T Consensus 18 Il~Aa~~l~~~~G~~~~Tv~~Ia~~agv-s~~t~Y~yF~sKe~Ll~~~ 64 (195)
T 2iu5_A 18 IAKAFKDLMQSNAYHQISVSDIMQTAKI-RRQTFYNYFQNQEELLSWI 64 (195)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHTS-CGGGGGGTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHH
T ss_conf 9999999999769630689999998688-8617988773999999999
No 156
>3crj_A Transcription regulator; APC88200, TETR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=36.19 E-value=22 Score=15.63 Aligned_cols=56 Identities=11% Similarity=0.122 Sum_probs=37.2
Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999985-892389996158898888999998339899999999999737999999862
Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85 (185)
Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE 85 (185)
+-.++..-+ +|-|++.|++.-|| +.+|||.+..+.+++-.. +.+...+.+.+.+.+
T Consensus 23 A~~lf~~~G~~~~t~~~IA~~agv-s~~tiY~~F~~K~~L~~~---~~~~~~~~~~~~~~~ 79 (199)
T 3crj_A 23 TYRALREHGYADLTIQRIADEYGK-STAAVHYYYDTKDDLLAA---FLDYLLERFVDSIHD 79 (199)
T ss_dssp HHHHHHHHTTTTCCHHHHHHHHTS-CHHHHHTTCSSHHHHHHH---HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHH---HHHHHHHHHHHHHHH
T ss_conf 999999749040779999999791-999998885899999999---999999998999998
No 157
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=35.75 E-value=22 Score=15.58 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=28.9
Q ss_pred HHHHHHHHHCC--HHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 99999998589--238999615889888899999833
Q gi|254781188|r 26 FAGILDQVANG--KALGHVLRKVGMPKYSTFYRWIKK 60 (185)
Q Consensus 26 ad~Ic~rIA~G--eSLr~ICkd~gMPs~sTV~rWL~k 60 (185)
-..|++.|++| .|-.+++..-|+ |+.+||+.++.
T Consensus 7 ~~~ll~~L~~g~~~SGe~la~~L~i-SR~aVwk~i~~ 42 (321)
T 1bia_A 7 PLKLIALLANGEFHSGEQLGETLGM-SRAAINKHIQT 42 (321)
T ss_dssp HHHHHHHHTTSSCBCHHHHHHHHTS-CHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHHHH
T ss_conf 9999999726995979999998797-99999999999
No 158
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=35.39 E-value=22 Score=15.55 Aligned_cols=50 Identities=10% Similarity=0.325 Sum_probs=35.8
Q ss_pred HCCCCCCCCCCCHHHHH---HHHHHH------HCCHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf 02465676445899999---999998------5892389996158898888999998339
Q gi|254781188|r 11 AVRAKKGCIYYSPELFA---GILDQV------ANGKALGHVLRKVGMPKYSTFYRWIKKD 61 (185)
Q Consensus 11 a~R~Kk~~i~Ys~Eiad---~Ic~rI------A~GeSLr~ICkd~gMPs~sTV~rWL~kd 61 (185)
..+.|+..+.||++-.+ .+|++. -+.+-+..+|...|+| ..+|--|.++.
T Consensus 14 ~~~~kr~Rt~~t~~Q~~~L~~~fe~~~~~~~~p~~~~~~~la~~~gl~-~~~v~vWF~N~ 72 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVP-RQVLKVWLHNN 72 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCC-HHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC-HHHEEEECCCC
T ss_conf 888885762179999999999999842445698999999999997898-88943446447
No 159
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=35.32 E-value=22 Score=15.54 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=39.4
Q ss_pred HHHCCHHHHHHHHCCCCCCHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98589238999615889888899999833----989999999999973799999986
Q gi|254781188|r 32 QVANGKALGHVLRKVGMPKYSTFYRWIKK----DLKLQEAYTEALQCRLDLLAEELL 84 (185)
Q Consensus 32 rIA~GeSLr~ICkd~gMPs~sTV~rWL~k----deEfreqYa~Are~qaD~laEEIL 84 (185)
|-..|.|...+++..|+ +.+++.+|.+- +.+.-.+++.+.....+.++..+.
T Consensus 21 R~~~gltq~elA~~lgv-s~~~is~~E~G~~~p~~~~l~~ia~~l~v~~~~~~~~~~ 76 (80)
T 3kz3_A 21 KNELGLSYESVADKMGM-GQSAVAALFNGINALNAYNAALLAKILKVSVEEFSPSIA 76 (80)
T ss_dssp HHHHTCCHHHHHHHTTS-CHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGTCHHHH
T ss_pred HHHCCCCHHHHHHHHCC-CHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCHHHH
T ss_conf 99939999999662098-898899998799789999999999998988999874878
No 160
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Pseudomonas aeruginosa}
Probab=35.21 E-value=23 Score=15.53 Aligned_cols=45 Identities=11% Similarity=0.116 Sum_probs=32.4
Q ss_pred HHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf 99999999985----89238999615889888899999833989999999
Q gi|254781188|r 24 ELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYT 69 (185)
Q Consensus 24 Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa 69 (185)
.+.+.-...++ +|-|++.||+.-|+ +.+|||....+.+++-....
T Consensus 18 ~Il~aA~~l~~~~G~~~~s~~~Ia~~agv-s~~tlY~~F~sKe~L~~~v~ 66 (215)
T 3e7q_A 18 LLIEATLACLKRHGFQGASVRKICAEAGV-SVGLINHHYDGKDALVAEAY 66 (215)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHTC-CHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHH
T ss_conf 99999999999749040779999999793-98899988688899999999
No 161
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=34.99 E-value=23 Score=15.51 Aligned_cols=51 Identities=16% Similarity=0.288 Sum_probs=35.4
Q ss_pred HHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 99999999985----89238999615889888899999833989999999999973
Q gi|254781188|r 24 ELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCR 75 (185)
Q Consensus 24 Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~q 75 (185)
.+.+.-...++ ++-|++.||+.-|+ +.+|||....+.+++-.........+
T Consensus 12 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agv-s~~t~Y~~F~~Ke~L~~~~~~~~~~~ 66 (195)
T 3pas_A 12 AFLEATVREVADHGFSATSVGKIAKAAGL-SPATLYIYYEDKEQLLLATFYYVSDQ 66 (195)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHTS-CHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CCCCHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999739340759999998691-91410342999999999999999999
No 162
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=34.92 E-value=23 Score=15.50 Aligned_cols=43 Identities=16% Similarity=0.257 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHH
Q ss_conf 999999999985----89238999615889888899999833989999
Q gi|254781188|r 23 PELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQE 66 (185)
Q Consensus 23 ~Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfre 66 (185)
.++.+.-.+.++ +|-|++.||+.-|+ |.+|||.+..+.+++-.
T Consensus 15 ~~Il~aa~~l~~~~G~~~~t~~~IA~~agv-s~~tiY~~F~sK~~L~~ 61 (199)
T 3on2_A 15 RVLLARAESTLEKDGVDGLSLRQLAREAGV-SHAAPSKHFRDRQALLD 61 (199)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHTC------CCCSSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHH
T ss_conf 999999999999759161659999999790-98678676698678999
No 163
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=34.53 E-value=23 Score=15.46 Aligned_cols=61 Identities=18% Similarity=0.227 Sum_probs=40.2
Q ss_pred HHHHHHHHHH-HC-C---HHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999998-58-9---2389996158898888999998339899999999999737999999862
Q gi|254781188|r 24 ELFAGILDQV-AN-G---KALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLE 85 (185)
Q Consensus 24 Eiad~Ic~rI-A~-G---eSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE 85 (185)
++.+.=...+ ++ | -|++.||+.-|+ +.+|||....+.+++-.........+.-...+++++
T Consensus 15 ~IL~AA~~l~~~e~G~~~~S~~~IA~~aGv-s~~tlY~yF~sK~~Ll~a~~~~~~~~~~~~~~~~~~ 80 (220)
T 3lsj_A 15 ALMSAARHLMESGRGFGSLSLREVTRAAGI-VPAGFYRHFSDMDQLGLALVAEVDETFRATLRAVRR 80 (220)
T ss_dssp HHHHHHHHHTTTSCCGGGCCHHHHHHHHTS-CGGGGTTTCSSHHHHHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999987599254119999999892-978888867999999999999999999999999862
No 164
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription/DNA complex; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=34.18 E-value=23 Score=15.42 Aligned_cols=43 Identities=26% Similarity=0.497 Sum_probs=32.0
Q ss_pred CCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC-CHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 8742455540246567644589999999999858-92389996158898888999998
Q gi|254781188|r 2 SNLVKKAKKAVRAKKGCIYYSPELFAGILDQVAN-GKALGHVLRKVGMPKYSTFYRWI 58 (185)
Q Consensus 2 s~~~k~~~Ka~R~Kk~~i~Ys~Eiad~Ic~rIA~-GeSLr~ICkd~gMPs~sTV~rWL 58 (185)
|.+..++++|. ++-..|+.+|+. |. +.+...-|+ +-+|+-||-
T Consensus 2 ~~~a~~r~kA~-----------~IEs~iL~rla~~Gq--~~vA~~~Gv-~eStISRwK 45 (83)
T 1zs4_A 2 SHMANKRNEAL-----------RIESALLNKIAMLGT--EKTAEAVGV-DKSQISRWK 45 (83)
T ss_dssp CCCCCHHHHHH-----------HHHHHHHHHHHHHCH--HHHHHHHTS-CHHHHHHHH
T ss_pred CHHHHHHHHHH-----------HHHHHHHHHHHHHCC--HHHHHHHCC-CHHHHHHHC
T ss_conf 34667578999-----------999999999998552--999999699-899987301
No 165
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli CFT073} SCOP: a.35.1.3 PDB: 2icp_A
Probab=34.11 E-value=23 Score=15.41 Aligned_cols=47 Identities=11% Similarity=0.071 Sum_probs=39.3
Q ss_pred HCCHHHHHHHHCCCCCCHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 589238999615889888899999833----989999999999973799999
Q gi|254781188|r 34 ANGKALGHVLRKVGMPKYSTFYRWIKK----DLKLQEAYTEALQCRLDLLAE 81 (185)
Q Consensus 34 A~GeSLr~ICkd~gMPs~sTV~rWL~k----deEfreqYa~Are~qaD~laE 81 (185)
..|.|...+.+.-|+ +.+|+.+|++- +.++....+.+....+|++..
T Consensus 19 ~~gltq~~lA~~lgv-s~~~is~~e~G~~~~s~~~~~~la~~lgvs~~~ll~ 69 (94)
T 2ict_A 19 ELNVSLREFARAMEI-APSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWLN 69 (94)
T ss_dssp HHTCCHHHHHHHHTC-CHHHHHHHHHTSSCCCHHHHHHHHHHTCSCHHHHHH
T ss_pred HCCCCHHHHHHHCCC-CHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHC
T ss_conf 969999999998496-389986987276447299999999999909999974
No 166
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=34.10 E-value=18 Score=16.16 Aligned_cols=25 Identities=12% Similarity=0.279 Sum_probs=12.3
Q ss_pred HHHHHHCCHHHHHHHHCCCCCCHHHH
Q ss_conf 99998589238999615889888899
Q gi|254781188|r 29 ILDQVANGKALGHVLRKVGMPKYSTF 54 (185)
Q Consensus 29 Ic~rIA~GeSLr~ICkd~gMPs~sTV 54 (185)
|...|..|.|-++|.+..|+ |-+|+
T Consensus 68 Va~lL~~g~syreIa~~tgv-S~aTI 92 (119)
T 3kor_A 68 VAKMIKQGYTYATIEQESGA-STATI 92 (119)
T ss_dssp HHHHHHHTCCHHHHHHHHCC-CHHHH
T ss_pred HHHHHHCCCCHHHHHHHHCC-CHHHH
T ss_conf 99998859999999999698-74547
No 167
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=33.98 E-value=24 Score=15.40 Aligned_cols=41 Identities=5% Similarity=0.233 Sum_probs=31.9
Q ss_pred HHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHH
Q ss_conf 99999985-8923899961588988889999983398999999
Q gi|254781188|r 27 AGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAY 68 (185)
Q Consensus 27 d~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqY 68 (185)
-+++..-+ ++-|++.||+.-|+ +.+|||....+.+++-...
T Consensus 17 ~~l~~~~G~~~~t~~~Ia~~agv-s~~t~y~~F~sK~~L~~~~ 58 (197)
T 2gen_A 17 LACFSEHGVDATTIEMIRDRSGA-SIGSLYHHFGNKERIHGEL 58 (197)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHCC-CHHHHHHHTCSHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCC-CCCHHHHCCCCHHHHHHHH
T ss_conf 99999759251779999998583-9211345079878999999
No 168
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=33.87 E-value=24 Score=15.39 Aligned_cols=60 Identities=7% Similarity=0.056 Sum_probs=42.4
Q ss_pred CCHHHHHHHHH-HHHCCHHHHHHHHCCCCCCHHHHHHHHHC--CHH--HHHHHHHHHHHHHHHHHH
Q ss_conf 58999999999-98589238999615889888899999833--989--999999999973799999
Q gi|254781188|r 21 YSPELFAGILD-QVANGKALGHVLRKVGMPKYSTFYRWIKK--DLK--LQEAYTEALQCRLDLLAE 81 (185)
Q Consensus 21 Ys~Eiad~Ic~-rIA~GeSLr~ICkd~gMPs~sTV~rWL~k--deE--freqYa~Are~qaD~laE 81 (185)
+..++.+.|=. |...|.|...+|..-|+ +.+||.+|-+. .|. .-.+.+++...-.|.|+.
T Consensus 6 ~~~~~g~rlk~~R~~~gltq~elA~~~gv-s~~~vs~~E~g~~~Ps~~~l~~ia~~l~vs~~~Ll~ 70 (114)
T 3op9_A 6 IQHQFAENLSRLKKEHGLKNHQIAELLNV-QTRTVAYYMSGETKPDIEKLIRLATYFHLSIDELVG 70 (114)
T ss_dssp CCCCHHHHHHHHHHHHTCCHHHHHHHHTS-CHHHHHHHHHTSSCCCHHHHHHHHHHHTCCHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCC-CCCHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHC
T ss_conf 99999999999999859999999761088-732799996587899999999999995998999928
No 169
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structural genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=33.46 E-value=18 Score=16.21 Aligned_cols=45 Identities=18% Similarity=0.420 Sum_probs=33.8
Q ss_pred HHHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf 9999999985-892389996158898888999998339899999999
Q gi|254781188|r 25 LFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE 70 (185)
Q Consensus 25 iad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~ 70 (185)
-+.++|..-+ .|-|++.||+.-|| +.+|||+...+.+++-....+
T Consensus 33 AA~~lf~e~G~~~~T~~~IA~~aGv-s~~tlY~~F~sKe~Ll~al~~ 78 (211)
T 3fiw_A 33 EALDLLDEVGLDGVSTRRLAKRLGV-EQPSLYWYFRTKRDLLTAMAQ 78 (211)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHHHTS-CTHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999749453759999999892-885898988998999999999
No 170
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=32.91 E-value=24 Score=15.29 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=33.5
Q ss_pred HHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf 99999999985----89238999615889888899999833989999999
Q gi|254781188|r 24 ELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYT 69 (185)
Q Consensus 24 Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa 69 (185)
.+.+.-...++ .|-|++.||+.-|+ +.+|||.+..+.+++-..+.
T Consensus 44 ~Il~Aa~~l~~e~G~~~~T~~~IA~~Agv-S~~tlY~yF~sKe~Ll~~~~ 92 (225)
T 2id3_A 44 AVLLAAGDALAADGFDALDLGEIARRAGV-GKTTVYRRWGTPGGLAADLL 92 (225)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTC-CHHHHHHHHCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHCCCCCCHHHHHHHHH
T ss_conf 99999999999849340779999999790-98887101899999999999
No 171
>2qko_A Possible transcriptional regulator, TETR family protein; structural genomics, PSI-2, protein structure initiative; 2.35A {Rhodococcus SP}
Probab=32.65 E-value=22 Score=15.61 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHH
Q ss_conf 999999999985----89238999615889888899999833989999
Q gi|254781188|r 23 PELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQE 66 (185)
Q Consensus 23 ~Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfre 66 (185)
..+.+.-.+.++ .|-|++.|++.-|+ +..|||.+..+.+++-.
T Consensus 31 ~~Il~AA~~l~~~~G~~~~Ti~~IA~~Agv-s~~tlY~~F~sK~~Ll~ 77 (215)
T 2qko_A 31 AALVNAAIEVLAREGARGLTFRAVDVEANV-PKGTASNYFPSRDDLFD 77 (215)
T ss_dssp HHHHHHHHHHHHHTCTTTCCHHHHHHHSSS-TTTCHHHHCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHH
T ss_conf 999999999999859140789999998786-84069888479899999
No 172
>2vpr_A Tetracycline resistance repressor protein; transcription, metal-binding, antibiotic resistance, transcription regulator; HET: TDC; 2.49A {Pasteurella multocida}
Probab=32.13 E-value=21 Score=15.77 Aligned_cols=44 Identities=23% Similarity=0.360 Sum_probs=33.4
Q ss_pred HHHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf 9999999985-89238999615889888899999833989999999
Q gi|254781188|r 25 LFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYT 69 (185)
Q Consensus 25 iad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa 69 (185)
-+..+|.+-+ .|-|++.|++.-|| +..|||+.....+++-....
T Consensus 12 AA~~lf~~~G~~~~sv~~IA~~aGv-s~~tlY~~F~sKe~L~~av~ 56 (207)
T 2vpr_A 12 NALILLNEVGIEGLTTRKLAQKIGV-EQPTLYWHVKNKRALLDALA 56 (207)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHTC-CHHHHTTTCCSHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999849352789999998784-87689998898899999999
No 173
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=32.07 E-value=25 Score=15.20 Aligned_cols=39 Identities=8% Similarity=0.187 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHH-CC-HHHHHHHHCCCCCCHHHHHHHHHCCH
Q ss_conf 999999999985-89-23899961588988889999983398
Q gi|254781188|r 23 PELFAGILDQVA-NG-KALGHVLRKVGMPKYSTFYRWIKKDL 62 (185)
Q Consensus 23 ~Eiad~Ic~rIA-~G-eSLr~ICkd~gMPs~sTV~rWL~kde 62 (185)
+++=-+|+..|. || .|++.|.+..|+| .+|+++++++=+
T Consensus 4 D~~D~~Il~~L~~n~R~s~~eiA~~~g~s-~~tv~~Ri~rL~ 44 (144)
T 2cfx_A 4 DQIDLNIIEELKKDSRLSMRELGRKIKLS-PPSVTERVRQLE 44 (144)
T ss_dssp CHHHHHHHHHHHHCSCCCHHHHHHHHTCC-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCC-HHHHHHHHHHHH
T ss_conf 88999999999983899999999998929-899999999998
No 174
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=32.04 E-value=23 Score=15.41 Aligned_cols=39 Identities=10% Similarity=0.226 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHHCC-----HHH---HHHHHCCCCCCHHHHHHHHHC
Q ss_conf 5899999999998589-----238---999615889888899999833
Q gi|254781188|r 21 YSPELFAGILDQVANG-----KAL---GHVLRKVGMPKYSTFYRWIKK 60 (185)
Q Consensus 21 Ys~Eiad~Ic~rIA~G-----eSL---r~ICkd~gMPs~sTV~rWL~k 60 (185)
-.+.+.+.|.+.|.+| ..| +.+|...|+ |.+||..-|+.
T Consensus 5 ~~e~V~~~i~~~I~~g~l~pG~~LpsE~eLa~~~gV-SRt~VREAL~~ 51 (239)
T 2di3_A 5 AHESVMDWVTEELRSGRLKIGDHLPSERALSETLGV-SRSSLREALRV 51 (239)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC-CHHHHHHHHHH
T ss_conf 999999999999982999980999019999999891-98999999999
No 175
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TETR family, PSI-2, protein structure initiative; 1.70A {Streptomyces coelicolor A3}
Probab=31.92 E-value=18 Score=16.19 Aligned_cols=43 Identities=14% Similarity=0.307 Sum_probs=31.7
Q ss_pred HHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHH
Q ss_conf 99999999985----892389996158898888999998339899999
Q gi|254781188|r 24 ELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEA 67 (185)
Q Consensus 24 Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreq 67 (185)
.|.+.=.+.++ +|-|++.|++.-|| +..|||+.....+++-..
T Consensus 33 ~Il~AA~~l~~e~G~~~~t~~~IA~~aGV-s~~tlY~yF~sKe~Ll~a 79 (241)
T 2hxi_A 33 QILDAAAELLLAGDAETFSVRKLAASLGT-DSSSLYRHFRNKTELLRA 79 (241)
T ss_dssp HHHHHHHHHHSSSSCCCCCHHHHHHHTTS-CHHHHHHHTSSHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHH
T ss_conf 99999999999729130539999999790-888999987999999999
No 176
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=30.19 E-value=27 Score=14.99 Aligned_cols=36 Identities=14% Similarity=0.247 Sum_probs=30.7
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 899999833989999999999973799999986200
Q gi|254781188|r 52 STFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEEP 87 (185)
Q Consensus 52 sTV~rWL~kdeEfreqYa~Are~qaD~laEEILE~~ 87 (185)
.++|.|+..+++....|..+........+..+++..
T Consensus 130 ~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~ 165 (332)
T 3i53_A 130 TSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKY 165 (332)
T ss_dssp SCHHHHHHHCHHHHHHHHHHHHHHHHHHHTTGGGSS
T ss_pred CCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 988999863999999999999864787899999737
No 177
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor A3}
Probab=30.06 E-value=27 Score=14.98 Aligned_cols=53 Identities=21% Similarity=0.122 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHH-HHHCCHHHHHHHHCCCCC-CHHHHHHHHHCC--HHHHHHHHHH
Q ss_conf 4458999999999-985892389996158898-888999998339--8999999999
Q gi|254781188|r 19 IYYSPELFAGILD-QVANGKALGHVLRKVGMP-KYSTFYRWIKKD--LKLQEAYTEA 71 (185)
Q Consensus 19 i~Ys~Eiad~Ic~-rIA~GeSLr~ICkd~gMP-s~sTV~rWL~kd--eEfreqYa~A 71 (185)
..|...+...|-. |...|.|...++..-|+. +.+|+.+|-+-. |....-+.-|
T Consensus 3 ~~~~~~ig~rir~~R~~~gltq~elA~~~g~~is~~~is~~E~G~~~ps~~~l~~la 59 (71)
T 2ewt_A 3 SEYAKQLGAKLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYERGDRAVTVQRLAELA 59 (71)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHTTTSSCHHHHHHHHHTCSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 389999999999999884998999998988874799999998599667689999999
No 178
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus}
Probab=30.06 E-value=27 Score=14.98 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=26.0
Q ss_pred HHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf 9999985-892389996158898888999998339
Q gi|254781188|r 28 GILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKD 61 (185)
Q Consensus 28 ~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kd 61 (185)
-|...+. .|-.+.+.++.-||| .+|+|+.|++.
T Consensus 23 ~I~~aL~~~~gn~s~aA~~Lgi~-r~tL~~klkk~ 56 (63)
T 3e7l_A 23 FIEEKLREYDYDLKRTAEEIGID-LSNLYRKIKSL 56 (63)
T ss_dssp HHHHHHHHTTTCHHHHHHHHTCC-HHHHHHHHHHT
T ss_pred HHHHHHHHCCCCHHHHHHHHCCC-HHHHHHHHHHH
T ss_conf 99999999199899999998979-99999999992
No 179
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=29.79 E-value=21 Score=15.77 Aligned_cols=53 Identities=13% Similarity=0.115 Sum_probs=38.7
Q ss_pred HHHCCHHHHHHHHCCCCCCHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98589238999615889888899999833----9899999999999737999999862
Q gi|254781188|r 32 QVANGKALGHVLRKVGMPKYSTFYRWIKK----DLKLQEAYTEALQCRLDLLAEELLE 85 (185)
Q Consensus 32 rIA~GeSLr~ICkd~gMPs~sTV~rWL~k----deEfreqYa~Are~qaD~laEEILE 85 (185)
|-..|.|-..+.+.-|+ +.+++.+|.+- +.+.-.+++++...-.+.++.++.+
T Consensus 26 R~~~glTQ~~lA~~lgi-s~~~is~~E~G~~~~s~~~l~~la~~l~v~~~~l~~~~~~ 82 (92)
T 1lmb_3 26 KNELGLSQESVADKMGM-GQSGVGALFNGINALNAYNAALLAKILKVSVEEFSPSIAR 82 (92)
T ss_dssp HHHHTCCHHHHHHHHTS-CHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGTCHHHHH
T ss_pred HHHCCCCHHHHHHHHCC-CHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99929999999998847-8989999977998999999999999989879999766899
No 180
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=29.26 E-value=28 Score=14.89 Aligned_cols=38 Identities=26% Similarity=0.245 Sum_probs=29.6
Q ss_pred HHHHHHHHHHH-C-CHHHHHHHHCCCCCCHHHHHHHHHCCH
Q ss_conf 99999999985-8-923899961588988889999983398
Q gi|254781188|r 24 ELFAGILDQVA-N-GKALGHVLRKVGMPKYSTFYRWIKKDL 62 (185)
Q Consensus 24 Eiad~Ic~rIA-~-GeSLr~ICkd~gMPs~sTV~rWL~kde 62 (185)
++=-.|+..|. | ..|++.|.+..|+ |.+|+++++++=+
T Consensus 3 ~~D~~Il~~L~~d~R~s~~eia~~lg~-s~~tv~~Ri~~L~ 42 (150)
T 2pn6_A 3 EIDLRILKILQYNAKYSLDEIAREIRI-PKATLSYRIKKLE 42 (150)
T ss_dssp HHHHHHHHHHTTCTTSCHHHHHHHHTS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCC-CHHHHHHHHHHHH
T ss_conf 899999999998489999999999893-9999999999999
No 181
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=29.20 E-value=28 Score=14.88 Aligned_cols=48 Identities=21% Similarity=0.273 Sum_probs=32.7
Q ss_pred HHHCCHHHHHHHHCCCCCCHHHHHHHHHCC--H--HHHHHHHHHHHHHHHHHH
Q ss_conf 985892389996158898888999998339--8--999999999997379999
Q gi|254781188|r 32 QVANGKALGHVLRKVGMPKYSTFYRWIKKD--L--KLQEAYTEALQCRLDLLA 80 (185)
Q Consensus 32 rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd--e--EfreqYa~Are~qaD~la 80 (185)
|...|.|...+++.-|+ +.+|+.+|.... | +.-.+.+++...-.+.|+
T Consensus 14 R~~~glsq~~la~~~gv-s~~~i~~~e~G~~~p~~~~l~~ia~~~~v~~~~ll 65 (76)
T 1adr_A 14 RKKLKIRQAALGKMVGV-SNVAISQWERSETEPNGENLLALSKALQCSPDYLL 65 (76)
T ss_dssp HHHHTCCHHHHHHHHTS-CHHHHHHHHTTSSCCCHHHHHHHHHHTTSCHHHHH
T ss_pred HHHCCCCHHHHHHHHCC-CHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 99939999999999796-99999999879989999999999999698899995
No 182
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacteroides thetaiotaomicron vpi-5482}
Probab=29.14 E-value=16 Score=16.53 Aligned_cols=37 Identities=16% Similarity=0.160 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHCCH--------HHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 8999999999985892--------3899961588988889999983
Q gi|254781188|r 22 SPELFAGILDQVANGK--------ALGHVLRKVGMPKYSTFYRWIK 59 (185)
Q Consensus 22 s~Eiad~Ic~rIA~Ge--------SLr~ICkd~gMPs~sTV~rWL~ 59 (185)
-.++++.|.+.|.+|. |.+.+|...|+ |..||.+-+.
T Consensus 13 y~qI~~~i~~~I~~G~l~~G~~LPs~~~La~~~~V-Sr~tVr~Al~ 57 (126)
T 3ic7_A 13 YLQIADRICDDILLGQYEEEGRIPSVREYASIVEV-NANTVMRSYE 57 (126)
T ss_dssp TTHHHHHHHHHHHTTSSCBTSEECCTTTTTTCC-C-CSGGGHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC-CHHHHHHHHH
T ss_conf 99999999999983999995998689999999698-9899999999
No 183
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=29.12 E-value=28 Score=14.87 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=32.2
Q ss_pred HHHCCHHHHHHHHCCCCCCHHHHHHHHHCC----HHHHHHHHHHHHHHHHHH
Q ss_conf 985892389996158898888999998339----899999999999737999
Q gi|254781188|r 32 QVANGKALGHVLRKVGMPKYSTFYRWIKKD----LKLQEAYTEALQCRLDLL 79 (185)
Q Consensus 32 rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd----eEfreqYa~Are~qaD~l 79 (185)
|...|.|...++..-|+ +.+|+.+|.+.. .+.-.+++.|.....+.|
T Consensus 14 R~~~glsq~~la~~~gv-s~~~i~~~e~g~~~p~~~~l~~la~~l~v~~~~l 64 (68)
T 2r1j_L 14 RKKLKIRQAALGKMVGV-SNVAISQWERSETEPNGENLLALSKALQCSPDYL 64 (68)
T ss_dssp HHHHTCCHHHHHHHHTS-CHHHHHHHHTTSSCCBHHHHHHHHHHTTSCHHHH
T ss_pred HHHCCCCHHHHHHHCCC-CHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 99859999999887399-9999999987998999999999999979979998
No 184
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis nctc 9343}
Probab=28.88 E-value=23 Score=15.51 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=30.4
Q ss_pred HHHCCHHHHHHHHCCCCCCHHHHHHHHHCC--H--HHHHHHHHHHHHHH
Q ss_conf 985892389996158898888999998339--8--99999999999737
Q gi|254781188|r 32 QVANGKALGHVLRKVGMPKYSTFYRWIKKD--L--KLQEAYTEALQCRL 76 (185)
Q Consensus 32 rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd--e--EfreqYa~Are~qa 76 (185)
+...|.|...+++.-|++ .+|+.+|.+.. | +.-.+.+++.....
T Consensus 19 r~~~gltq~~lA~~~gvs-~~tis~~e~g~~~p~~~~l~~ia~~l~v~~ 66 (76)
T 3bs3_A 19 LAEKQRTNRWLAEQMGKS-ENTISRWCSNKSQPSLDMLVKVAELLNVDP 66 (76)
T ss_dssp HHHTTCCHHHHHHHHTCC-HHHHHHHHTTSSCCCHHHHHHHHHHHTSCG
T ss_pred HHHCCCCHHHHHHHHCCC-HHHHHHHHCCCCCCCHHHHHHHHHHHCCCH
T ss_conf 999099899999998889-999999985999999999999999979979
No 185
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG; HET: MSE; 1.54A {Mesorhizobium loti MAFF303099}
Probab=28.85 E-value=29 Score=14.84 Aligned_cols=47 Identities=13% Similarity=0.191 Sum_probs=34.3
Q ss_pred HHHHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 99999999985-8923899961588988889999983398999999999
Q gi|254781188|r 24 ELFAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEA 71 (185)
Q Consensus 24 Eiad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~A 71 (185)
+.+..+|..-+ +|-|++.||+.-|+ +.+|||.+..+.+++-......
T Consensus 19 ~aa~~lf~~~G~~~~ti~~Ia~~agv-s~~~~Y~~F~sK~~L~~~~~~~ 66 (211)
T 3bhq_A 19 QAATAAFISKGYDGTSMEEIATKAGA-SKQTVYKHFTDKETLFGEVVLS 66 (211)
T ss_dssp HHHHHHHHHHCSTTCCHHHHHHHHTC-CHHHHHHHHCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999859150779999998588-8405877789999999999999
No 186
>1jhg_A Trp operon repressor; complex (regulatory protein/peptide), DNA-binding regulatory protein; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 1trr_A* 1tro_A*
Probab=28.85 E-value=25 Score=15.18 Aligned_cols=26 Identities=15% Similarity=0.368 Sum_probs=13.8
Q ss_pred HHHHHHCCH-HHHHHHHCCCCCCHHHHH
Q ss_conf 999985892-389996158898888999
Q gi|254781188|r 29 ILDQVANGK-ALGHVLRKVGMPKYSTFY 55 (185)
Q Consensus 29 Ic~rIA~Ge-SLr~ICkd~gMPs~sTV~ 55 (185)
|...|..|+ |-+.|.+..|+ |-.|+-
T Consensus 50 ia~~L~~g~~s~reI~~~~gv-S~aTIt 76 (101)
T 1jhg_A 50 IIEELLRGEMSQRELKNELGA-GIATIT 76 (101)
T ss_dssp HHHHHHHCCSCHHHHHHHHCC-CHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCC-CHHHHH
T ss_conf 999999089579999999698-657778
No 187
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=28.73 E-value=29 Score=14.83 Aligned_cols=99 Identities=15% Similarity=0.191 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHH
Q ss_conf 899999999998589238999615889888899999833989-9999999999737999999862002300564036037
Q gi|254781188|r 22 SPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLK-LQEAYTEALQCRLDLLAEELLEEPAPTAEELANPVFY 100 (185)
Q Consensus 22 s~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeE-freqYa~Are~qaD~laEEILE~~a~~~ee~~~~~~~ 100 (185)
...+.+-|-+.+...-+|..+|+..|| |.++|.+.++..-. |.+-..+ .+.+. |-.+|..+.-+-.++|..+++
T Consensus 9 ~~ri~~~i~~~~~~~~~l~~lA~~~~~-S~~~l~r~fk~~g~t~~~yi~~---~Rl~~-A~~lL~~~~~~i~~IA~~~Gf 83 (120)
T 3mkl_A 9 RTRVCTVINNNIAHEWTLARIASELLM-SPSLLKKKLREEETSYSQLLTE---CRMQR-ALQLIVIHGFSIKRVAVSCGY 83 (120)
T ss_dssp HHHHHHHHHTSTTSCCCHHHHHHHTTC-CHHHHHHHHHHTTCCHHHHHHH---HHHHH-HHHHHTSTTCCHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCC-CHHHHHHHHHHCCCCHHHHHHH---HHHHH-HHHHHHCCCCCHHHHHHHHCC
T ss_conf 999999998675899999999999893-9999999999839999999999---99999-999860565839999999789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899799998899999876466534342
Q gi|254781188|r 101 SKMRDRKQRMGTFLLEKLSNQKYGPRV 127 (185)
Q Consensus 101 ~~lr~~~~~~~~w~l~k~~p~~yg~rv 127 (185)
....--.+..-+| --+.|..|-.+.
T Consensus 84 ~~~s~f~r~Fk~~--~G~tP~~yR~~~ 108 (120)
T 3mkl_A 84 HSVSYFIYVFRNY--YGMTPTEYQERS 108 (120)
T ss_dssp SCHHHHHHHHHHH--HSSCHHHHHHHC
T ss_pred CCHHHHHHHHHHH--HCCCHHHHHHHH
T ss_conf 9889999999999--990999999976
No 188
>2dbb_A Putative HTH-type transcriptional regulator PH0061; ASNC family, helix-turn-helix (HTH) domain, structural genomics, NPPSFA; 2.00A {Pyrococcus horikoshii OT3}
Probab=28.67 E-value=29 Score=14.82 Aligned_cols=39 Identities=10% Similarity=0.046 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHH-CC-HHHHHHHHCCCCCCHHHHHHHHHCCH
Q ss_conf 999999999985-89-23899961588988889999983398
Q gi|254781188|r 23 PELFAGILDQVA-NG-KALGHVLRKVGMPKYSTFYRWIKKDL 62 (185)
Q Consensus 23 ~Eiad~Ic~rIA-~G-eSLr~ICkd~gMPs~sTV~rWL~kde 62 (185)
+++=..|+..|. || .|++.|.+..|+| .+|+++.+++=+
T Consensus 8 D~~D~~Il~~L~~d~R~s~~eia~~lgls-~~tv~~Ri~~L~ 48 (151)
T 2dbb_A 8 DRVDMQLVKILSENSRLTYRELADILNTT-RQRIARRIDKLK 48 (151)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHTTSC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHCCC-HHHHHHHHHHHH
T ss_conf 19999999999885999999999998969-999999999999
No 189
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint center for structural genomics; HET: MSE; 1.92A {Ralstonia eutropha JMP134}
Probab=28.02 E-value=29 Score=14.75 Aligned_cols=38 Identities=16% Similarity=0.278 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHCCH-------HHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 58999999999985892-------3899961588988889999983
Q gi|254781188|r 21 YSPELFAGILDQVANGK-------ALGHVLRKVGMPKYSTFYRWIK 59 (185)
Q Consensus 21 Ys~Eiad~Ic~rIA~Ge-------SLr~ICkd~gMPs~sTV~rWL~ 59 (185)
-++.+...|-+.|.+|+ +-+.+|...|+ |.++|..-|.
T Consensus 17 ~~d~v~~~i~~~I~~G~l~pG~~L~e~~La~~~gv-SRtpVReAL~ 61 (222)
T 3ihu_A 17 ASDTVFFGIMSGLELGTFVPGQRLVETDLVAHFGV-GRNSVREALQ 61 (222)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCC-CHHHHHHHHH
T ss_conf 99999999999998499999297189999999893-9799999999
No 190
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=27.44 E-value=30 Score=14.68 Aligned_cols=36 Identities=11% Similarity=-0.055 Sum_probs=29.0
Q ss_pred HCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf 5892389996158898888999998339899999999
Q gi|254781188|r 34 ANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE 70 (185)
Q Consensus 34 A~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~ 70 (185)
-+|-|++.|++.-|+ +.+|||.+....+++-.....
T Consensus 53 ~~~~t~~~IA~~agv-s~~tiY~yF~sK~~L~~~~~~ 88 (237)
T 3kkd_A 53 VRAVRHRAVAAEAQV-PLSATTYYFKDIDDLITDTFA 88 (237)
T ss_dssp GGGCCHHHHHHHHTS-CTTTC-----CHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHHHH
T ss_conf 240779999999886-857798876999999999999
No 191
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.05 E-value=19 Score=16.04 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=22.4
Q ss_pred HHHCCHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 9858923899961588988889999983
Q gi|254781188|r 32 QVANGKALGHVLRKVGMPKYSTFYRWIK 59 (185)
Q Consensus 32 rIA~GeSLr~ICkd~gMPs~sTV~rWL~ 59 (185)
.+..|++|-.|++..|++ +..+.+|=.
T Consensus 19 ~V~~GDTL~~IA~~y~v~-~~~i~~~N~ 45 (77)
T 2djp_A 19 QLEPGDTLAGLALKYGVT-MEQIKRANR 45 (77)
T ss_dssp CCCTTCCHHHHHHHHTCC-HHHHHHHHT
T ss_pred EECCCCCHHHHHHHHHHH-HHHHHHHCC
T ss_conf 989999999999998889-999998759
No 192
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=27.01 E-value=31 Score=14.63 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=36.4
Q ss_pred HHHHHHHH-HHCCHHHHHHHHCCCCCCHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999-85892389996158898888999998339----89999999999973799999
Q gi|254781188|r 25 LFAGILDQ-VANGKALGHVLRKVGMPKYSTFYRWIKKD----LKLQEAYTEALQCRLDLLAE 81 (185)
Q Consensus 25 iad~Ic~r-IA~GeSLr~ICkd~gMPs~sTV~rWL~kd----eEfreqYa~Are~qaD~laE 81 (185)
+++.|-.. -..|.|...+|+.-|+ +.+|+.+|.+.. .+.-.+.+.+...-.+.+++
T Consensus 10 f~~~Lk~lr~~~~lsq~elA~~lgv-s~~~is~~e~G~~~ps~~~l~~la~~l~v~~~~l~~ 70 (94)
T 2kpj_A 10 FSENLNSYIAKSEKTQLEIAKSIGV-SPQTFNTWCKGIAIPRMGKVQALADYFNINKSDLIE 70 (94)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHTC-CHHHHHHHHTTSCCCCHHHHHHHHHHHTCCTHHHHS
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHC
T ss_conf 9999999999949989999998892-883699997376799999999999998978999908
No 193
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=26.69 E-value=31 Score=14.59 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHCCH--------HHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 999999999985892--------38999615889888899999833
Q gi|254781188|r 23 PELFAGILDQVANGK--------ALGHVLRKVGMPKYSTFYRWIKK 60 (185)
Q Consensus 23 ~Eiad~Ic~rIA~Ge--------SLr~ICkd~gMPs~sTV~rWL~k 60 (185)
.++.+.|.+.|.+|+ |-+.+|+..|+ |..||.+-+..
T Consensus 13 ~~i~~~i~~~I~~G~~~~G~~LPse~~La~~~~V-Sr~TVR~Al~~ 57 (243)
T 2wv0_A 13 YQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGI-SRMTVRQALSN 57 (243)
T ss_dssp HHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC-CHHHHHHHHHH
T ss_conf 9999999999983999993999379999999796-99999999999
No 194
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PSI, protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=26.36 E-value=31 Score=14.55 Aligned_cols=55 Identities=16% Similarity=0.146 Sum_probs=37.9
Q ss_pred HHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHC---CHHHH--HHHHHHHHHHHHHHHHHH
Q ss_conf 999998589238999615889888899999833---98999--999999997379999998
Q gi|254781188|r 28 GILDQVANGKALGHVLRKVGMPKYSTFYRWIKK---DLKLQ--EAYTEALQCRLDLLAEEL 83 (185)
Q Consensus 28 ~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~k---deEfr--eqYa~Are~qaD~laEEI 83 (185)
..+.++-.|.++..+...-|+ +.+|+.+|-+- ++.+. .+.++|...-.|.|+.+.
T Consensus 19 ~~lr~~R~~~s~~elA~~~gi-s~~~is~iE~G~~~~~s~~~l~~ia~~L~v~~~~Ll~~~ 78 (86)
T 2ofy_A 19 ELLRSARGDMSMVTVAFDAGI-SVETLRKIETGRIATPAFFTIAAVARVLDLSLDDVAAVV 78 (86)
T ss_dssp HHHHHHHTTSCHHHHHHHHTC-CHHHHHHHHTTCCSSCBHHHHHHHHHHTTCCHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHCC-CHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHCC
T ss_conf 999999987899999999797-999999998699788759999999999897899996244
No 195
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=26.09 E-value=32 Score=14.52 Aligned_cols=36 Identities=8% Similarity=0.154 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHC-CH--HHHHHHHCCCCCCHHHHHHHH
Q ss_conf 89999999999858-92--389996158898888999998
Q gi|254781188|r 22 SPELFAGILDQVAN-GK--ALGHVLRKVGMPKYSTFYRWI 58 (185)
Q Consensus 22 s~Eiad~Ic~rIA~-Ge--SLr~ICkd~gMPs~sTV~rWL 58 (185)
..++.+.|.+.+.. |. |++.||+..|+.+.+ +..+|
T Consensus 7 q~~il~~I~~~~~~~G~~PS~reIa~~~Giss~s-~v~~L 45 (196)
T 3k2z_A 7 QRKVLLFIEEFIEKNGYPPSVREIARRFRITPRG-ALLHL 45 (196)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHH-HHHHH
T ss_conf 9999999999999849896699999982999645-78889
No 196
>2ia0_A Putative HTH-type transcriptional regulator PF0864; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=25.96 E-value=32 Score=14.51 Aligned_cols=39 Identities=23% Similarity=0.193 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHH-CC-HHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf 8999999999985-89-2389996158898888999998339
Q gi|254781188|r 22 SPELFAGILDQVA-NG-KALGHVLRKVGMPKYSTFYRWIKKD 61 (185)
Q Consensus 22 s~Eiad~Ic~rIA-~G-eSLr~ICkd~gMPs~sTV~rWL~kd 61 (185)
-+++=-.|+..|. || .|.+.|.+..|++ .+|+++.+++=
T Consensus 15 LD~~D~~IL~~Lq~d~R~s~~eIA~~lgls-~~tv~~Ri~rL 55 (171)
T 2ia0_A 15 LDDLDRNILRLLKKDARLTISELSEQLKKP-ESTIHFRIKKL 55 (171)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSC-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCC-HHHHHHHHHHH
T ss_conf 499999999999984899999999998909-99999999999
No 197
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=25.73 E-value=32 Score=14.48 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 5899999999998589238999615889888899999833989999999999
Q gi|254781188|r 21 YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEAL 72 (185)
Q Consensus 21 Ys~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Ar 72 (185)
.++.--.-|.-+.-+|.|...|+..-|+ |.+||...++.--..=..|..-.
T Consensus 26 Lpe~qR~v~~l~~~e~ls~~EIA~~lgi-S~~aV~~~l~RA~~~L~~~e~kL 76 (113)
T 1xsv_A 26 LTNKQRNYLELFYLEDYSLSEIADTFNV-SRQAVYDNIRRTGDLVEDYEKKL 76 (113)
T ss_dssp SCHHHHHHHHHHHTSCCCHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999919999999999896-99999999999999999999987
No 198
>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1}
Probab=25.61 E-value=32 Score=14.46 Aligned_cols=45 Identities=22% Similarity=0.369 Sum_probs=30.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHH--HHHHHHHHHH
Q ss_conf 389996158898888999998339899999999999--7379999998
Q gi|254781188|r 38 ALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQ--CRLDLLAEEL 83 (185)
Q Consensus 38 SLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~Are--~qaD~laEEI 83 (185)
.++.||+.+|+|+.. +--++.--+++-..|..-+. ...|.++|-|
T Consensus 7 aikeicktdgipnik-wgmyiafgekllksylkmkagsassdmiaeyi 53 (82)
T 3fbl_A 7 AIKEICKTDGIPNIK-WGMYIAFGEKLLKSYLKMKAGSASSDMIAEYI 53 (82)
T ss_dssp HHHHHHHHTTCCGGG-HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHCCCCCCCCH-HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 999998137998511-57889999999999997751674078999999
No 199
>2do9_A NALP10, nacht-, LRR- and PYD-containing protein 10; apoptosis, inflammation, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=25.51 E-value=33 Score=14.45 Aligned_cols=35 Identities=17% Similarity=0.133 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99987646653434203443313467889999998
Q gi|254781188|r 113 FLLEKLSNQKYGPRVSVESKHTIDLRPAIERLREH 147 (185)
Q Consensus 113 w~l~k~~p~~yg~rvs~e~~h~~~~~~~~~~~~~~ 147 (185)
=+|-..++..|+-.|++++=..|.++-+-+|+++.
T Consensus 62 dlLv~~y~~~~A~~vt~~il~~mn~~dLaerL~~~ 96 (115)
T 2do9_A 62 SKLISMYGAQEAVRVVSRSLLAMNLMELVDYLNQV 96 (115)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTCHHHHHHHHHC
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 99999868489999999999995909999999998
No 200
>2nrk_A Hypothetical protein GRPB; UPF0157, PFAM04229, glutamate-rich protein, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis V583} SCOP: d.218.1.14
Probab=25.37 E-value=33 Score=14.44 Aligned_cols=26 Identities=8% Similarity=0.224 Sum_probs=21.8
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 89999983398999999999997379
Q gi|254781188|r 52 STFYRWIKKDLKLQEAYTEALQCRLD 77 (185)
Q Consensus 52 sTV~rWL~kdeEfreqYa~Are~qaD 77 (185)
-.|..||+.+|+.+++|..-++.-+.
T Consensus 118 l~FRD~Lra~p~~~~~Y~~lK~~la~ 143 (173)
T 2nrk_A 118 LAFRNYLRENPAIATTYGTLKKQLAQ 143 (173)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_conf 99999998199999999999999998
No 201
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=25.11 E-value=33 Score=14.40 Aligned_cols=39 Identities=23% Similarity=0.357 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHH-CCH-HHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 58999999999985-892-38999615889888899999833
Q gi|254781188|r 21 YSPELFAGILDQVA-NGK-ALGHVLRKVGMPKYSTFYRWIKK 60 (185)
Q Consensus 21 Ys~Eiad~Ic~rIA-~Ge-SLr~ICkd~gMPs~sTV~rWL~k 60 (185)
.-+++=-+|+..|. ||. |..+|.+..|++ .+|+++.+++
T Consensus 5 ~lD~~D~~Il~~L~~d~R~s~~~ia~~lg~s-~~tv~~Ri~r 45 (152)
T 2cg4_A 5 LIDNLDRGILEALMGNARTAYAELAKQFGVS-PETIHVRVEK 45 (152)
T ss_dssp CCCHHHHHHHHHHHHCTTSCHHHHHHHHTSC-HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCC-HHHHHHHHHH
T ss_conf 5689999999999984899999999998919-9999999999
No 202
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, TETR family, transcription; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=24.89 E-value=33 Score=14.38 Aligned_cols=41 Identities=5% Similarity=0.090 Sum_probs=30.6
Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHH
Q ss_conf 999999985-892389996158898888999998339899999
Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEA 67 (185)
Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreq 67 (185)
+-..|..-+ .|-|++.|++.-|+ +.+|||.+....+++-..
T Consensus 16 A~~lf~~~G~~~~ti~~IA~~agv-s~~tiY~~F~sK~~L~~~ 57 (186)
T 2jj7_A 16 AKKKFGERGYEGTSIQEIAKEAKV-NVAMASYYFNGKENLYYE 57 (186)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHTS-CHHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHH
T ss_conf 999999859141779999998696-988997787897899999
No 203
>2hm2_Q ASC2, pyrin-only protein 1, PAAD-only; pyrin domain, six helix bundle, apoptosis; NMR {Homo sapiens}
Probab=24.64 E-value=34 Score=14.35 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998764665343420344331346788999999
Q gi|254781188|r 113 FLLEKLSNQKYGPRVSVESKHTIDLRPAIERLRE 146 (185)
Q Consensus 113 w~l~k~~p~~yg~rvs~e~~h~~~~~~~~~~~~~ 146 (185)
=+|...|+..|+-.|++++=..+.++-+-++++.
T Consensus 54 ~lLv~~y~~~~A~~vt~~il~~mn~~~Lae~l~~ 87 (89)
T 2hm2_Q 54 DKLVASYYEDYAAELVVAVLRDMRMLEEAARLQR 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_conf 9999986887999999999999485999999986
No 204
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=24.59 E-value=34 Score=14.34 Aligned_cols=58 Identities=7% Similarity=0.065 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999985892389996158898888999998339---89999999999973799999
Q gi|254781188|r 22 SPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKD---LKLQEAYTEALQCRLDLLAE 81 (185)
Q Consensus 22 s~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd---eEfreqYa~Are~qaD~laE 81 (185)
+.|+.+.|.+..+. +|-+++++..|+ +.+|+..|.+.. .+.-.+-++|.....+.|+.
T Consensus 7 ~~e~l~Rl~~~~g~-~sq~eLA~~lGv-s~stis~~e~~~~~p~~~l~~ia~~~gv~~~~l~~ 67 (189)
T 2fjr_A 7 NVDVLDRICEAYGF-SQKIQLANHFDI-ASSSLSNRYTRGAISYDFAAHCALETGANLQWLLT 67 (189)
T ss_dssp HHHHHHHHHHHHTC-SSHHHHHHHTTC-CHHHHHHHHHSSSCCHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHCC-CCHHHHHHHHCC-CHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHCC
T ss_conf 89999999998299-879999999797-99999999828999778999999880998345116
No 205
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative stress, transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=24.16 E-value=35 Score=14.29 Aligned_cols=40 Identities=18% Similarity=0.126 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf 58999999999985892389996158898888999998339
Q gi|254781188|r 21 YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKD 61 (185)
Q Consensus 21 Ys~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd 61 (185)
.++.--.-|.-+.-.|.|...|+..-|+| .+||..++..-
T Consensus 38 L~~~~r~vi~l~~~~g~s~~eIA~~lgis-~~tV~~~l~Ra 77 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRGWSTAQIATDLGIA-EGTVKSRLHYA 77 (92)
T ss_dssp SCHHHHHHHHHHHTSCCCHHHHHHHHTSC-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCCC-HHHHHHHHHHH
T ss_conf 99999999999999399999999998969-99999999999
No 206
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=24.06 E-value=35 Score=14.27 Aligned_cols=44 Identities=18% Similarity=0.287 Sum_probs=32.3
Q ss_pred HHHHHHHHHHH----CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHH
Q ss_conf 99999999985----8923899961588988889999983398999999
Q gi|254781188|r 24 ELFAGILDQVA----NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAY 68 (185)
Q Consensus 24 Eiad~Ic~rIA----~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqY 68 (185)
.+.+.-...|. .|-|++.||+.-|+ +.+|||.+..+.+++-...
T Consensus 27 ~Il~aA~~l~~~~G~~~~t~~~IA~~agv-s~~tlY~~F~sK~~Ll~~~ 74 (214)
T 2zb9_A 27 EVLHAVGELLLTEGTAQLTFERVARVSGV-SKTTLYKWWPSKGALALDG 74 (214)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHCC-CHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CHHHHHHHCCCHHHHHHHH
T ss_conf 99999999999859350879999999792-9888745089999999999
No 207
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=23.99 E-value=35 Score=14.27 Aligned_cols=12 Identities=8% Similarity=0.246 Sum_probs=5.8
Q ss_pred CCHHHHHHHHHC
Q ss_conf 888899999833
Q gi|254781188|r 49 PKYSTFYRWIKK 60 (185)
Q Consensus 49 Ps~sTV~rWL~k 60 (185)
|++..+...+..
T Consensus 522 ~~~~~~l~l~~~ 533 (1010)
T 2xgj_A 522 LGYNMILNLMRV 533 (1010)
T ss_dssp CCHHHHHHHHHS
T ss_pred CCHHHHHHHHHC
T ss_conf 888999999860
No 208
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=23.77 E-value=29 Score=14.75 Aligned_cols=48 Identities=19% Similarity=0.175 Sum_probs=31.2
Q ss_pred CCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCH-HHHHHHHCCCCCCHHHHHHHHHCCHH
Q ss_conf 74245554024656764458999999999985892-38999615889888899999833989
Q gi|254781188|r 3 NLVKKAKKAVRAKKGCIYYSPELFAGILDQVANGK-ALGHVLRKVGMPKYSTFYRWIKKDLK 63 (185)
Q Consensus 3 ~~~k~~~Ka~R~Kk~~i~Ys~Eiad~Ic~rIA~Ge-SLr~ICkd~gMPs~sTV~rWL~kdeE 63 (185)
-++|+.+.-+|. -.+|-.|..|. ++.++-+.-||| .+|+..-|..=++
T Consensus 11 evSKtk~sF~RR------------LYlA~LId~~~~nvp~L~~~TGmP-RRT~QD~I~AL~d 59 (117)
T 3ke2_A 11 QVSKQHKAFLRK------------LYLAHLMDDARHNLLSLGKLTGMP-RRTLQDAIASFAD 59 (117)
T ss_dssp SSCHHHHHHHHH------------HHHHHHHHHSCCCHHHHHHHHCCC-HHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHH------------HHHHHHHHCCCCCHHHHHHHHCCC-HHHHHHHHHHHHC
T ss_conf 666679999999------------999999962898689999885896-8689999986102
No 209
>3m8j_A FOCB protein; all-alpha, helix-turn-helix, transcription; 1.40A {Escherichia coli}
Probab=22.39 E-value=37 Score=14.06 Aligned_cols=42 Identities=19% Similarity=0.227 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHHH
Q ss_conf 8999999999985892389996158898888999998339899
Q gi|254781188|r 22 SPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKL 64 (185)
Q Consensus 22 s~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeEf 64 (185)
++.+...+-+.+-.|.+-+.+|...|| +.+-|.+-+++=...
T Consensus 46 SekvI~AL~dylV~G~~rk~ac~r~~V-~~syfS~~L~rL~~v 87 (111)
T 3m8j_A 46 SDRVILAMKDYLVSGHSRKDVCEKYQM-NNGYFSTTLGRLTRL 87 (111)
T ss_dssp CHHHHHHHHHHHTTCCCHHHHHHHTTC-CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_conf 689999999999848709999999099-789999999999999
No 210
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=22.38 E-value=37 Score=14.06 Aligned_cols=37 Identities=8% Similarity=0.142 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHCCH--------HHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 999999999985892--------38999615889888899999833
Q gi|254781188|r 23 PELFAGILDQVANGK--------ALGHVLRKVGMPKYSTFYRWIKK 60 (185)
Q Consensus 23 ~Eiad~Ic~rIA~Ge--------SLr~ICkd~gMPs~sTV~rWL~k 60 (185)
.++++.|.+.|.+|. |-+.+|...|+ |..||.+-|..
T Consensus 32 ~qI~~~L~~~I~~G~l~pG~rLPsereLA~~~gV-SR~TVR~Al~~ 76 (272)
T 3eet_A 32 LRVAGDLRKKIVDGSLPPHTRLPSQARIREEYGV-SDTVALEARKV 76 (272)
T ss_dssp HHHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC-CHHHHHHHHHH
T ss_conf 9999999999975999992999089999999894-99999999999
No 211
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=21.91 E-value=38 Score=14.00 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=28.2
Q ss_pred HHHCCHHHHHHHHCCCCCCHHHHHHHHHCC--HHHHHHHHHH
Q ss_conf 985892389996158898888999998339--8999999999
Q gi|254781188|r 32 QVANGKALGHVLRKVGMPKYSTFYRWIKKD--LKLQEAYTEA 71 (185)
Q Consensus 32 rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd--eEfreqYa~A 71 (185)
|...|.|...++...|+ +.+|+.+|.+-. |.+..-+.-|
T Consensus 17 r~~~g~tq~~lA~~lgi-s~~~is~~e~G~~~p~~~~l~~ia 57 (73)
T 3omt_A 17 LAEKGKTNLWLTETLDK-NKTTVSKWCTNDVQPSLETLFDIA 57 (73)
T ss_dssp HHHHTCCHHHHHHHTTC-CHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHCC-CHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 99939989999998599-866789998498899867999999
No 212
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=21.85 E-value=38 Score=13.99 Aligned_cols=48 Identities=21% Similarity=0.256 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf 8999999999985892389996158898888999998339899999999
Q gi|254781188|r 22 SPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTE 70 (185)
Q Consensus 22 s~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfreqYa~ 70 (185)
++.--.-|--+.-+|.|...|+..-|++ .+||+.+++.--..-..|..
T Consensus 24 ~~~qR~vi~L~~~~~ls~~EIA~~lgis-~~~V~~~l~Ra~~~L~e~e~ 71 (113)
T 1s7o_A 24 TDKQMNYIELYYADDYSLAEIADEFGVS-RQAVYDNIKRTEKILETYEM 71 (113)
T ss_dssp CHHHHHHHHHHHHTCCCHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999731299999998979-99999999999999975899
No 213
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=21.79 E-value=38 Score=13.98 Aligned_cols=40 Identities=10% Similarity=0.184 Sum_probs=30.3
Q ss_pred HHHHHHHHH-CCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHH
Q ss_conf 999999985-89238999615889888899999833989999
Q gi|254781188|r 26 FAGILDQVA-NGKALGHVLRKVGMPKYSTFYRWIKKDLKLQE 66 (185)
Q Consensus 26 ad~Ic~rIA-~GeSLr~ICkd~gMPs~sTV~rWL~kdeEfre 66 (185)
+..+|..-+ .|-|++.||+.-|+ +.+|||.+..+.+++-.
T Consensus 20 A~~l~~~~G~~~~si~~Ia~~agv-s~~tiY~~F~sK~~L~~ 60 (210)
T 2wui_A 20 AERVFLEKGVGTTAMADLADAAGV-SRGAVYGHYKNKIEVCL 60 (210)
T ss_dssp HHHHHHHSCTTTCCHHHHHHHHTS-CHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCC-CCCCCCCCCCCHHHHHH
T ss_conf 999999759161759999998787-97744447899999999
No 214
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A
Probab=21.63 E-value=39 Score=13.96 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=11.3
Q ss_pred HHHHHHCCCCCCHHHHHHHHHCCH
Q ss_conf 899961588988889999983398
Q gi|254781188|r 39 LGHVLRKVGMPKYSTFYRWIKKDL 62 (185)
Q Consensus 39 Lr~ICkd~gMPs~sTV~rWL~kde 62 (185)
|+.|.+.-|+ |.+||.+-|+.++
T Consensus 5 i~dIA~~aGV-S~~TVSr~Ln~~~ 27 (332)
T 2hsg_A 5 IYDVAREASV-SMATVSRVVNGNP 27 (332)
T ss_dssp HHHHHHHTTS-CHHHHHHHHTTCT
T ss_pred HHHHHHHHCC-CHHHHHHHHCCCC
T ss_conf 9999999897-9999999978959
No 215
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=21.52 E-value=39 Score=13.95 Aligned_cols=37 Identities=8% Similarity=0.208 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCC
Q ss_conf 58999999999985892389996158898888999998339
Q gi|254781188|r 21 YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKD 61 (185)
Q Consensus 21 Ys~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd 61 (185)
|-.++...-+.. .| +.+++.+.-|+ +.+|+|+-|++.
T Consensus 21 ~Ek~~I~~aL~~--~g-~~~~aA~~Lgi-sr~tL~rKlkky 57 (61)
T 1g2h_A 21 YEAQVLKLFYAE--YP-STRKLAQRLGV-SHTAIANKLKQY 57 (61)
T ss_dssp HHHHHHHHHHHH--SC-SHHHHHHHTTS-CTHHHHHHHHTT
T ss_pred HHHHHHHHHHHH--CC-CHHHHHHHHCC-CHHHHHHHHHHH
T ss_conf 999999999999--68-99999999797-899999999996
No 216
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=21.35 E-value=39 Score=13.92 Aligned_cols=54 Identities=17% Similarity=0.048 Sum_probs=42.2
Q ss_pred HHHHCCHHHHHHHHCCCCCCHHHHHHHHHCC------HH----HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9985892389996158898888999998339------89----9999999999737999999862
Q gi|254781188|r 31 DQVANGKALGHVLRKVGMPKYSTFYRWIKKD------LK----LQEAYTEALQCRLDLLAEELLE 85 (185)
Q Consensus 31 ~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kd------eE----freqYa~Are~qaD~laEEILE 85 (185)
.|.+.|.|+..+.+.-++ +.+++-.|=+.+ +- |=.+|++++..-.+.+++..-+
T Consensus 15 ~R~~~glS~~elA~~l~I-s~~~l~~iE~g~~~~~~~~~~~~g~lr~ya~~Lgld~~~l~~~~~~ 78 (112)
T 2wus_R 15 KREERRITLLDASLFTNI-NPSKLKRIEEGDLKGLDAEVYIKSYIKRYSEFLELSPDEMLKLYEE 78 (112)
T ss_dssp HHHTTTCCHHHHHHHSSC-CHHHHHHHHHTCCTTSSCHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHCC-CHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999969999999999856-8999999887895337652289999999999969799999999986
No 217
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=20.45 E-value=29 Score=14.75 Aligned_cols=25 Identities=24% Similarity=0.587 Sum_probs=20.6
Q ss_pred HHCCHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 85892389996158898888999998
Q gi|254781188|r 33 VANGKALGHVLRKVGMPKYSTFYRWI 58 (185)
Q Consensus 33 IA~GeSLr~ICkd~gMPs~sTV~rWL 58 (185)
+..|.+|-+|.+..|++ .+.+.+|=
T Consensus 7 V~~GDTl~~IA~~y~vs-~~~i~~~N 31 (48)
T 1e0g_A 7 VRKGDSLSSIAKRHGVN-IKDVMRWN 31 (48)
T ss_dssp ECTTCCHHHHHHHHTCC-HHHHHHHC
T ss_pred ECCCCCHHHHHHHHCCC-HHHHHHHC
T ss_conf 89999999999998968-99999865
No 218
>3cuo_A Uncharacterized HTH-type transcriptional regulator YGAV; DNA-binding transcriptional regulator, structural genomics, PSI, MCSG; 2.00A {Escherichia coli K12}
Probab=20.22 E-value=41 Score=13.77 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=22.1
Q ss_pred HHHHHHHHHHCC--HHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 999999998589--238999615889888899999833
Q gi|254781188|r 25 LFAGILDQVANG--KALGHVLRKVGMPKYSTFYRWIKK 60 (185)
Q Consensus 25 iad~Ic~rIA~G--eSLr~ICkd~gMPs~sTV~rWL~k 60 (185)
.--.|+..|++| .+...|+...|+ +.+|+...|+.
T Consensus 25 ~Rl~Il~~L~~~~~~~v~eLa~~l~~-s~stvS~HL~~ 61 (99)
T 3cuo_A 25 KRLLILCMLSGSPGTSAGELTRITGL-SASATSQHLAR 61 (99)
T ss_dssp HHHHHHHHHTTCCSEEHHHHHHHHCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEHHHHHHHHCC-CHHHHHHHHHH
T ss_conf 99999999858999079997745585-98799999999
No 219
>1mus_A TN5 transposase; hairpin, DNA binding, transcription/DNA complex; HET: DNA; 1.90A {Escherichia coli} SCOP: c.55.3.4 PDB: 1mur_A* 1mm8_A 1muh_A* 3ecp_A* 1b7e_A*
Probab=20.04 E-value=42 Score=13.74 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=13.9
Q ss_pred HHHHHH--CCHHHHHHHH-CCCCCCHHHHHHHHHCC
Q ss_conf 999985--8923899961-58898888999998339
Q gi|254781188|r 29 ILDQVA--NGKALGHVLR-KVGMPKYSTFYRWIKKD 61 (185)
Q Consensus 29 Ic~rIA--~GeSLr~ICk-d~gMPs~sTV~rWL~kd 61 (185)
|.+.++ -|.||...|+ +.. +....||.+.++
T Consensus 34 l~~~l~~~p~~sip~a~~~~~a--~~~AaYRFl~N~ 67 (477)
T 1mus_A 34 VAAQLAKYSGKSITISSEGSKA--AQEGAYRFIRNP 67 (477)
T ss_dssp HHHHHHHTTTSCHHHHTTTCHH--HHHHHHHHHTCT
T ss_pred HHHHHHHCCCCCCCCHHCCCHH--HHHHHHHHHCCC
T ss_conf 9999974768884312139989--999999976289
Done!