HHSEARCH alignment of GI: 254781188 and SCOP domain: d1pdnc_

Alignment

Probab=93.62  E-value=0.034  Score=32.77  Aligned_cols=42  Identities=10%  Similarity=0.138  Sum_probs=38.9

Q ss_pred             CCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCHH
Q ss_conf             5899999999998589238999615889888899999833989
Q gi|254781188|r   21 YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLK   63 (185)
Q Consensus        21 Ys~Eiad~Ic~rIA~GeSLr~ICkd~gMPs~sTV~rWL~kdeE   63 (185)
                      |+.++-..|++.+.+|.|.++|++..++ |.+||++|++...+
T Consensus        17 Ls~dlR~rIv~~~~~G~s~r~iA~~~~V-S~~tV~k~l~r~~~   58 (123)
T d1pdnc_          17 LPNNIRLKIVEMAADGIRPCVISRQLRV-SHGCVSKILNRYQE   58 (123)
T ss_dssp             CCHHHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHCC-CHHHHHHHHHHHHC
T ss_conf             9899999999999804899999999896-99999999999871

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Paired domain
domain: Paired protein (prd)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]