RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781188|ref|YP_003065601.1| hypothetical protein
CLIBASIA_05475 [Candidatus Liberibacter asiaticus str. psy62]
         (185 letters)



>gnl|CDD|35672 KOG0451, KOG0451, KOG0451, Predicted 2-oxoglutarate dehydrogenase,
           E1 subunit [Carbohydrate transport and metabolism].
          Length = 913

 Score = 27.3 bits (60), Expect = 2.5
 Identities = 14/41 (34%), Positives = 18/41 (43%)

Query: 87  PAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRV 127
           P P+  E  NPV   K R R+Q  G       S+  +G  V
Sbjct: 280 PNPSHLEAVNPVAMGKTRSRQQSRGEGDYSPDSSAPFGDHV 320


>gnl|CDD|144872 pfam01434, Peptidase_M41, Peptidase family M41. 
          Length = 192

 Score = 26.4 bits (59), Expect = 4.4
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 6/37 (16%)

Query: 64  LQEAYTEALQC------RLDLLAEELLEEPAPTAEEL 94
           L+EAY  A +        LD LAE LLE+    AEE 
Sbjct: 153 LEEAYERAKEILTENRDELDALAEALLEKETLDAEEF 189


>gnl|CDD|145660 pfam02624, YcaO, YcaO-like family. 
          Length = 332

 Score = 26.2 bits (58), Expect = 6.3
 Identities = 17/87 (19%), Positives = 27/87 (31%), Gaps = 9/87 (10%)

Query: 67  AYTEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPR 126
           A TEA Q RL  +     E+P    E++A      ++                     P 
Sbjct: 221 ALTEAAQSRLTAILGA-REDPTLDLEDVARLYNLPRLFRD--SSLLLESGAARFFSADPT 277

Query: 127 VSVE----SKHTI--DLRPAIERLREH 147
           V       +   +  DL   + RL+  
Sbjct: 278 VDFSDLPDATGDLEEDLAELVARLKAA 304


>gnl|CDD|37924 KOG2713, KOG2713, KOG2713, Mitochondrial tryptophanyl-tRNA
           synthetase [Translation, ribosomal structure and
           biogenesis].
          Length = 347

 Score = 26.1 bits (57), Expect = 6.5
 Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 16/118 (13%)

Query: 4   LVKKAKKAVRAKKGCIYYSPELFAGI-----LDQVANGKALGHVLRKVGMPKYSTFYRW- 57
           +VKK KKA       + Y P    G+     +     GK++  V+ +      + F    
Sbjct: 232 IVKKIKKAQTDNTSGVTYDPANRPGVSNLLNIYAAVTGKSIEEVVEESANMSTADFKDNV 291

Query: 58  ----IKKDLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMG 111
               I+    ++  + E +     L  +++LEE A  A ELA       + + KQ MG
Sbjct: 292 AEAVIEHLAPIRTEFEELINEPEYL--DKVLEEGAEKARELA----AKNLEEIKQLMG 343


>gnl|CDD|144936 pfam01527, Transposase_8, Transposase.  Transposase proteins are
          necessary for efficient DNA transposition. This family
          consists of various E. coli insertion elements and
          other bacterial transposases some of which are members
          of the IS3 family.
          Length = 75

 Score = 25.8 bits (57), Expect = 7.3
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 15 KKGCIYYSPELFAGILDQVAN-GKALGHVLRKVGMPKYSTFYRWIKKDLKLQEA 67
           K    YS E  A  + +    G ++  + R+ G+   +T Y+W KK       
Sbjct: 1  MKRRRRYSEEFKARAVKESLEPGASVSELAREHGVS-PATLYKWRKKYRGGLLV 53


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.316    0.133    0.375 

Gapped
Lambda     K      H
   0.267   0.0588    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,214,928
Number of extensions: 113674
Number of successful extensions: 345
Number of sequences better than 10.0: 1
Number of HSP's gapped: 345
Number of HSP's successfully gapped: 19
Length of query: 185
Length of database: 6,263,737
Length adjustment: 88
Effective length of query: 97
Effective length of database: 4,362,145
Effective search space: 423128065
Effective search space used: 423128065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.9 bits)