RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254781188|ref|YP_003065601.1| hypothetical protein
CLIBASIA_05475 [Candidatus Liberibacter asiaticus str. psy62]
(185 letters)
>3hef_A Gene 1 protein; bacteriophage SF6, terminase small subunit
GP1, GP1 octameric assembly, GP1 channel, DNA
recognition, DNA packaging; 1.65A {Enterobacteria phage
SF6} (A:)
Length = 143
Score = 65.7 bits (160), Expect = 3e-12
Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 14/126 (11%)
Query: 21 YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
Y PE+ I +++G++L V ++ GMP ST +RW+ K ++ Y +A + R D +
Sbjct: 16 YMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKHEDFRDKYAKATEARADSIF 75
Query: 81 EELLEEPAPTAEELANPVFYSKMRDRKQRMGT----FLLEKLSNQKYGPRVSVESKHTID 136
EE+ E+A+ K R+ + L +++ +KYG +V+ E
Sbjct: 76 EEIF--------EIADNAIPDAAEVAKARLRVDTRKWALARMNPRKYGDKVTNE--LVGK 125
Query: 137 LRPAIE 142
AI+
Sbjct: 126 DGGAIQ 131
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Drosophila melanogaster} (A:)
Length = 87
Score = 32.8 bits (75), Expect = 0.030
Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 21 YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60
+P + ++ +G++ V R +G+P+ ST W K
Sbjct: 23 LTPRDKIHAIQRIHDGESKASVARDIGVPE-STLRGWCKN 61
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex,
nuclear transport, exportin, RAN GTPase, protein
transport; HET: GTP; 2.0A {Saccharomyces cerevisiae}
(C:716-960)
Length = 245
Score = 29.1 bits (65), Expect = 0.32
Identities = 6/88 (6%), Positives = 21/88 (23%), Gaps = 12/88 (13%)
Query: 18 CIYYSPELFAGILDQVANGKALGHVLRKV--GMPKYSTFYRW------IKKDLKLQEA-- 67
+ +D+V +G + +P + + +
Sbjct: 75 SNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIGNLLDRKIALIGVLNMVINGQFFQ 134
Query: 68 --YTEALQCRLDLLAEELLEEPAPTAEE 93
Y + ++ + E + +
Sbjct: 135 SKYPTLISSTMNSIIETASSQSIANLKN 162
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural
genomics, PSI, protein structure initiative; 2.10A
{Pseudomonas aeruginosa} (A:226-497)
Length = 272
Score = 28.8 bits (64), Expect = 0.44
Identities = 6/32 (18%), Positives = 10/32 (31%)
Query: 64 LQEAYTEALQCRLDLLAEELLEEPAPTAEELA 95
+ +Y L + + P E LA
Sbjct: 227 VHPSYQAPLLDYFEAACAKGGHTPHLLREALA 258
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
Length = 120
Score = 28.6 bits (64), Expect = 0.54
Identities = 8/21 (38%), Positives = 8/21 (38%), Gaps = 7/21 (33%)
Query: 92 EELANPVFYS--KM-----RD 105
E L VFY M RD
Sbjct: 9 ESLVEVVFYRGMTMQVAVPRD 29
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase,
enoyl reductase, ketoacyl synthase, ketoacyl reductase;
3.1A {Thermomyces lanuginosus} PDB: 2uvb_A*
(A:351-401,A:517-530,A:614-906)
Length = 358
Score = 27.1 bits (58), Expect = 1.7
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 59 KKDLKLQEAYTEALQCRLDLLAEELLEE 86
K + QE+ +ALQ +LDL E +
Sbjct: 6 KAFVASQES-QKALQAQLDLWQAEHGDI 32
>1u1i_A INO1, MIPS, MYO-inositol-1-phosphate synthase; NAD cofactor,
metal IONS, isomerase; HET: NAD; 1.90A {Archaeoglobus
fulgidus dsm 4304} (A:1-228,A:335-368)
Length = 262
Score = 26.8 bits (59), Expect = 1.7
Identities = 9/48 (18%), Positives = 15/48 (31%)
Query: 125 PRVSVESKHTIDLRPAIERLREHYKHLKPIDSERIPHKSTEKPLEIVE 172
+ + L + R+ E K ++ I STE E
Sbjct: 111 GDIKTLEGEGLSLAEMVSRIEEDIKSFADDETVVINVASTEPLPNYSE 158
>3flo_A DNA polymerase alpha subunit B; protein-protein complex,
phosphoesterase fold, OB fold, zinc-binding motif, DNA
replication; HET: DNA; 2.50A {Saccharomyces cerevisiae}
(A:1-127,A:295-307)
Length = 140
Score = 25.9 bits (57), Expect = 3.2
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 7/52 (13%)
Query: 50 KYSTFYRWIKKDLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELANPVFYS 101
K+ T LQEA + L +++ + + + + A+P S
Sbjct: 1 KFRTMR------QNLQEAS-DVLDDQIESFTKIIQNHYKLSPNDFADPTIQS 45
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA;
heptameric ring, heptamer, ring, oligomer, RAD51
polymerization motif; HET: DNA; 2.85A {Pyrococcus
furiosus} (A:113-349)
Length = 237
Score = 25.8 bits (55), Expect = 4.0
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 2/70 (2%)
Query: 108 QRMGTFLLEKLSNQKYGPRVSVESKHTIDLRPAIERLREHYKHLKPIDSERIPHKSTEKP 167
+ P H+ LR + + + + + ID+ +P E
Sbjct: 170 TNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEG--EAV 227
Query: 168 LEIVESSIAE 177
I E I +
Sbjct: 228 FSITEKGIED 237
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.316 0.133 0.375
Gapped
Lambda K H
0.267 0.0362 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,403,543
Number of extensions: 63989
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 19
Length of query: 185
Length of database: 4,956,049
Length adjustment: 83
Effective length of query: 102
Effective length of database: 2,150,234
Effective search space: 219323868
Effective search space used: 219323868
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.8 bits)