RPSBLAST alignment of GI: 254781188 and protein with PDBid: 3hef
>3hef_A Gene 1 protein; bacteriophage SF6, terminase small subunit GP1, GP1 octameric assembly, GP1 channel, DNA recognition, DNA packaging; 1.65A {Enterobacteria phage SF6} Length = 143
Score = 71.9 bits (176), Expect = 8e-14
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 8/122 (6%)
Query: 9 KKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAY 68
KA R Y PE+ I +++G++L V ++ GMP ST +RW+ K ++ Y
Sbjct: 8 PKAGRPSD----YMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKHEDFRDKY 63
Query: 69 TEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVS 128
+A + R D + EE+ E A+ + + L +++ +KYG +V+
Sbjct: 64 AKATEARADSIFEEIFEI----ADNAIPDAAEVAKARLRVDTRKWALARMNPRKYGDKVT 119
Query: 129 VE 130
E
Sbjct: 120 NE 121