RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781188|ref|YP_003065601.1| hypothetical protein
CLIBASIA_05475 [Candidatus Liberibacter asiaticus str. psy62]
         (185 letters)



>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 959

 Score = 28.7 bits (63), Expect = 0.32
 Identities = 7/89 (7%), Positives = 22/89 (24%), Gaps = 14/89 (15%)

Query: 18  CIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDL-------------KL 64
                 +     +D+V +G     +     +    T    + + +               
Sbjct: 790 SNKLGSDFLIHFIDEVQDG-LFQQIWGNFIITTLPTIGNLLDRKIALIGVLNMVINGQFF 848

Query: 65  QEAYTEALQCRLDLLAEELLEEPAPTAEE 93
           Q  Y   +   ++ + E    +     + 
Sbjct: 849 QSKYPTLISSTMNSIIETASSQSIANLKN 877


>d1r9da_ c.7.1.1 (A:) Glycerol dehydratase DhaB1 {Clostridium
           butyricum [TaxId: 1492]}
          Length = 786

 Score = 26.3 bits (58), Expect = 1.8
 Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)

Query: 131 SKHTIDLRPAIERLREHYKHLKP-IDSER 158
           SK        I  L+    + KP ++SER
Sbjct: 2   SKGFSTQTERINILKAQILNAKPCVESER 30


>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR,
           middle domain {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 179

 Score = 25.2 bits (54), Expect = 3.5
 Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 3/50 (6%)

Query: 48  MPKYSTFYRWIKKDLKLQEAYTEALQC---RLDLLAEELLEEPAPTAEEL 94
            P     +  +     L +  ++AL         LA++L  +P PT   L
Sbjct: 97  HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 146


>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 242

 Score = 24.8 bits (52), Expect = 4.4
 Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 2/46 (4%)

Query: 132 KHTIDLRPAIERLREHYKHLKPIDSERIPHKSTEKPLEIVESSIAE 177
            H    R  + + R   +  K  DS  +P    E    I    + +
Sbjct: 196 AHASTTRLYLRKGRGETRICKIYDSPCLPEA--EAMFAINADGVGD 239


>d1vi6a_ c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Archaeoglobus
           fulgidus [TaxId: 2234]}
          Length = 193

 Score = 24.6 bits (53), Expect = 5.9
 Identities = 8/34 (23%), Positives = 16/34 (47%)

Query: 133 HTIDLRPAIERLREHYKHLKPIDSERIPHKSTEK 166
           + +D+R   ER+R   K L   +  +I   +  +
Sbjct: 40  YVLDIRKLDERIRVAAKFLSRYEPSKILLVAARQ 73


>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
           {Escherichia coli [TaxId: 562]}
          Length = 450

 Score = 24.1 bits (51), Expect = 8.3
 Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 13/71 (18%)

Query: 85  EEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSV---ESKHTID----- 136
           E+P  T  +L+      ++R R  ++  F L   +      R+           +     
Sbjct: 384 EDPGYTLYDLSE-----RLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLED 438

Query: 137 LRPAIERLREH 147
            + +++ L +H
Sbjct: 439 YKASLKYLSDH 449


>d1aora1 a.110.1.1 (A:211-605) Aldehyde ferredoxin oxidoreductase
           {Archaeon Pyrococcus furiosus [TaxId: 2261]}
          Length = 395

 Score = 23.7 bits (51), Expect = 9.5
 Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 8/86 (9%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLKLQEAYTEALQCRLDLLA 80
              + +  +L+             K+G   ++      ++   L+     A     D L 
Sbjct: 291 LGADDYRDLLNAALGWDFTTEDYLKIGERIWN-----AERLFNLKAGLDPARD---DTLP 342

Query: 81  EELLEEPAPTAEELANPVFYSKMRDR 106
           +  LEEP P      + V   +M  R
Sbjct: 343 KRFLEEPMPEGPNKGHTVRLKEMLPR 368


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.133    0.375 

Gapped
Lambda     K      H
   0.267   0.0470    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 691,018
Number of extensions: 32896
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 15
Length of query: 185
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 105
Effective length of database: 1,309,196
Effective search space: 137465580
Effective search space used: 137465580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.7 bits)