BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781188|ref|YP_003065601.1| hypothetical protein
CLIBASIA_05475 [Candidatus Liberibacter asiaticus str. psy62]
         (185 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781188|ref|YP_003065601.1| hypothetical protein CLIBASIA_05475 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 185

 Score =  380 bits (976), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 185/185 (100%), Positives = 185/185 (100%)

Query: 1   MSNLVKKAKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60
           MSNLVKKAKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK
Sbjct: 1   MSNLVKKAKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60

Query: 61  DLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSN 120
           DLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSN
Sbjct: 61  DLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSN 120

Query: 121 QKYGPRVSVESKHTIDLRPAIERLREHYKHLKPIDSERIPHKSTEKPLEIVESSIAEQSI 180
           QKYGPRVSVESKHTIDLRPAIERLREHYKHLKPIDSERIPHKSTEKPLEIVESSIAEQSI
Sbjct: 121 QKYGPRVSVESKHTIDLRPAIERLREHYKHLKPIDSERIPHKSTEKPLEIVESSIAEQSI 180

Query: 181 IEHNN 185
           IEHNN
Sbjct: 181 IEHNN 185


>gi|254781217|ref|YP_003065630.1| hypothetical protein CLIBASIA_05620 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 162

 Score = 69.7 bits (169), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 83/154 (53%), Gaps = 8/154 (5%)

Query: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLK-LQEAYTEALQCRLDLL 79
           Y+ E    IL   + G +L    +K G+   S F+ W+K+D + L++ Y +A Q  ++ L
Sbjct: 6   YTKERIDNILASFSGGLSLSQSCKKHGVTVVS-FHGWVKQDREDLEKRYEQAKQSHMEHL 64

Query: 80  AEELLEE-PAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKHTIDLR 138
           +E L     AP  EE  +     K+R+ + +   + LEK     YG  VSVE KHTIDL+
Sbjct: 65  SENLASVVEAPLTEEERDHPQAIKLRELRMKRLQWELEKRYRNVYGNHVSVEQKHTIDLK 124

Query: 139 PAIERLRE--HYKHLKPIDSERIPHKSTEKPLEI 170
           P ++R++     K LKP+   +   K TEKPLE+
Sbjct: 125 PLMDRVQHSIQSKGLKPV---KALDKQTEKPLEL 155


>gi|254780717|ref|YP_003065130.1| zinc uptake ABC transporter [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 294

 Score = 24.6 bits (52), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 10  KAVRAKKGCIYYSPELFAGILDQVANGKA-LGHVLRKVGM 48
           K +  K  C++Y PE  + I+  + N    +  +L   GM
Sbjct: 230 KIISDKISCLFYGPEFDSKIIRSITNDTGVMSAILDPEGM 269


>gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
          Length = 647

 Score = 24.3 bits (51), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 36  GKALGHVLRKVGMPKYSTFYRWIKKDLKL 64
           G+ALG V++     ++ST Y W+   L +
Sbjct: 436 GRALGMVMQLPEADRHSTTYVWMTSRLTI 464


>gi|254780525|ref|YP_003064938.1| flagellar hook protein FlgE [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 421

 Score = 23.1 bits (48), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 22/122 (18%), Positives = 43/122 (35%), Gaps = 26/122 (21%)

Query: 28  GILDQVANGKALGHVLRKVGMPKYSTFYRWIKK------DLKLQEAYTEALQCRLDLLAE 81
           G L+ VA G  LG+ L+    P     ++ +++      +L      T  +   LD  A 
Sbjct: 114 GFLENVAGGVLLGYPLKNASAPLIVNSFQGLERINVKHAELSAMPTTTGFISNNLDKNAT 173

Query: 82  ELLEEPAP--------------------TAEELANPVFYSKMRDRKQRMGTFLLEKLSNQ 121
            +  +  P                        +   V+Y+K  D+K  +  F  ++ +N 
Sbjct: 174 IITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTNN 233

Query: 122 KY 123
            +
Sbjct: 234 SF 235


>gi|254780359|ref|YP_003064772.1| GTP cyclohydrolase II protein (riboflavin biosynthesis) [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 210

 Score = 22.3 bits (46), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 107 KQRMGTFLLEKLSNQKYGPRVSVESKHTI 135
           K ++   +LE  S  K    VSV+SKH I
Sbjct: 73  KLKLNPMVLENESVHKTAFTVSVDSKHGI 101


>gi|254780402|ref|YP_003064815.1| 3-deoxy-D-manno-octulosonic-acid transferase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 440

 Score = 21.9 bits (45), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 121 QKYGPRVSVESKHTIDLRPAIERLREHYKHLKPIDSERIPHKSTEKPLEIVESS 174
           +KY  + ++     +D++PA+ R  +++K    I SE     S   PL + E S
Sbjct: 100 RKYLGQYAIHQYAPLDIQPAVSRFLKYWKPDCMILSE-----SDIWPLTVFELS 148


>gi|254780714|ref|YP_003065127.1| tRNA (guanine-N(1)-)-methyltransferase [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 236

 Score = 21.6 bits (44), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 23 PELFAGILDQVANGKAL 39
          PE+F G L++   GKAL
Sbjct: 12 PEMFPGHLEKSVAGKAL 28


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.316    0.133    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,361
Number of Sequences: 1233
Number of extensions: 4585
Number of successful extensions: 19
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 15
length of query: 185
length of database: 328,796
effective HSP length: 69
effective length of query: 116
effective length of database: 243,719
effective search space: 28271404
effective search space used: 28271404
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 36 (18.5 bits)