BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781188|ref|YP_003065601.1| hypothetical protein CLIBASIA_05475 [Candidatus Liberibacter asiaticus str. psy62] (185 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781188|ref|YP_003065601.1| hypothetical protein CLIBASIA_05475 [Candidatus Liberibacter asiaticus str. psy62] Length = 185 Score = 380 bits (976), Expect = e-108, Method: Compositional matrix adjust. Identities = 185/185 (100%), Positives = 185/185 (100%) Query: 1 MSNLVKKAKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60 MSNLVKKAKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK Sbjct: 1 MSNLVKKAKKAVRAKKGCIYYSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKK 60 Query: 61 DLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSN 120 DLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSN Sbjct: 61 DLKLQEAYTEALQCRLDLLAEELLEEPAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSN 120 Query: 121 QKYGPRVSVESKHTIDLRPAIERLREHYKHLKPIDSERIPHKSTEKPLEIVESSIAEQSI 180 QKYGPRVSVESKHTIDLRPAIERLREHYKHLKPIDSERIPHKSTEKPLEIVESSIAEQSI Sbjct: 121 QKYGPRVSVESKHTIDLRPAIERLREHYKHLKPIDSERIPHKSTEKPLEIVESSIAEQSI 180 Query: 181 IEHNN 185 IEHNN Sbjct: 181 IEHNN 185 >gi|254781217|ref|YP_003065630.1| hypothetical protein CLIBASIA_05620 [Candidatus Liberibacter asiaticus str. psy62] Length = 162 Score = 69.7 bits (169), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 54/154 (35%), Positives = 83/154 (53%), Gaps = 8/154 (5%) Query: 21 YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLK-LQEAYTEALQCRLDLL 79 Y+ E IL + G +L +K G+ S F+ W+K+D + L++ Y +A Q ++ L Sbjct: 6 YTKERIDNILASFSGGLSLSQSCKKHGVTVVS-FHGWVKQDREDLEKRYEQAKQSHMEHL 64 Query: 80 AEELLEE-PAPTAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKHTIDLR 138 +E L AP EE + K+R+ + + + LEK YG VSVE KHTIDL+ Sbjct: 65 SENLASVVEAPLTEEERDHPQAIKLRELRMKRLQWELEKRYRNVYGNHVSVEQKHTIDLK 124 Query: 139 PAIERLRE--HYKHLKPIDSERIPHKSTEKPLEI 170 P ++R++ K LKP+ + K TEKPLE+ Sbjct: 125 PLMDRVQHSIQSKGLKPV---KALDKQTEKPLEL 155 >gi|254780717|ref|YP_003065130.1| zinc uptake ABC transporter [Candidatus Liberibacter asiaticus str. psy62] Length = 294 Score = 24.6 bits (52), Expect = 0.98, Method: Compositional matrix adjust. Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Query: 10 KAVRAKKGCIYYSPELFAGILDQVANGKA-LGHVLRKVGM 48 K + K C++Y PE + I+ + N + +L GM Sbjct: 230 KIISDKISCLFYGPEFDSKIIRSITNDTGVMSAILDPEGM 269 >gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62] Length = 647 Score = 24.3 bits (51), Expect = 1.6, Method: Compositional matrix adjust. Identities = 10/29 (34%), Positives = 17/29 (58%) Query: 36 GKALGHVLRKVGMPKYSTFYRWIKKDLKL 64 G+ALG V++ ++ST Y W+ L + Sbjct: 436 GRALGMVMQLPEADRHSTTYVWMTSRLTI 464 >gi|254780525|ref|YP_003064938.1| flagellar hook protein FlgE [Candidatus Liberibacter asiaticus str. psy62] Length = 421 Score = 23.1 bits (48), Expect = 2.9, Method: Compositional matrix adjust. Identities = 22/122 (18%), Positives = 43/122 (35%), Gaps = 26/122 (21%) Query: 28 GILDQVANGKALGHVLRKVGMPKYSTFYRWIKK------DLKLQEAYTEALQCRLDLLAE 81 G L+ VA G LG+ L+ P ++ +++ +L T + LD A Sbjct: 114 GFLENVAGGVLLGYPLKNASAPLIVNSFQGLERINVKHAELSAMPTTTGFISNNLDKNAT 173 Query: 82 ELLEEPAP--------------------TAEELANPVFYSKMRDRKQRMGTFLLEKLSNQ 121 + + P + V+Y+K D+K + F ++ +N Sbjct: 174 IITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTNN 233 Query: 122 KY 123 + Sbjct: 234 SF 235 >gi|254780359|ref|YP_003064772.1| GTP cyclohydrolase II protein (riboflavin biosynthesis) [Candidatus Liberibacter asiaticus str. psy62] Length = 210 Score = 22.3 bits (46), Expect = 6.0, Method: Compositional matrix adjust. Identities = 12/29 (41%), Positives = 16/29 (55%) Query: 107 KQRMGTFLLEKLSNQKYGPRVSVESKHTI 135 K ++ +LE S K VSV+SKH I Sbjct: 73 KLKLNPMVLENESVHKTAFTVSVDSKHGI 101 >gi|254780402|ref|YP_003064815.1| 3-deoxy-D-manno-octulosonic-acid transferase [Candidatus Liberibacter asiaticus str. psy62] Length = 440 Score = 21.9 bits (45), Expect = 7.3, Method: Compositional matrix adjust. Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 5/54 (9%) Query: 121 QKYGPRVSVESKHTIDLRPAIERLREHYKHLKPIDSERIPHKSTEKPLEIVESS 174 +KY + ++ +D++PA+ R +++K I SE S PL + E S Sbjct: 100 RKYLGQYAIHQYAPLDIQPAVSRFLKYWKPDCMILSE-----SDIWPLTVFELS 148 >gi|254780714|ref|YP_003065127.1| tRNA (guanine-N(1)-)-methyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 236 Score = 21.6 bits (44), Expect = 9.4, Method: Compositional matrix adjust. Identities = 9/17 (52%), Positives = 12/17 (70%) Query: 23 PELFAGILDQVANGKAL 39 PE+F G L++ GKAL Sbjct: 12 PEMFPGHLEKSVAGKAL 28 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.316 0.133 0.375 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 115,361 Number of Sequences: 1233 Number of extensions: 4585 Number of successful extensions: 19 Number of sequences better than 100.0: 15 Number of HSP's better than 100.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 15 length of query: 185 length of database: 328,796 effective HSP length: 69 effective length of query: 116 effective length of database: 243,719 effective search space: 28271404 effective search space used: 28271404 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 36 (18.5 bits)