Query gi|254781189|ref|YP_003065602.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 252
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed Jun 1 01:47:26 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781189.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iol_B Glucagon; receptor-liga 21.9 33 0.0014 14.3 1.7 23 213-235 8-30 (31)
2 1jrj_A Exendin-4; Trp-CAGE, GL 13.5 59 0.0025 12.7 1.7 24 214-237 9-32 (39)
3 2q67_A Potassium channel prote 12.3 64 0.0027 12.4 4.1 23 10-32 5-27 (114)
4 1zch_A Hypothetical oxidoreduc 12.0 18 0.00075 15.9 -1.7 80 134-219 140-222 (255)
5 2r18_A Capsid assembly protein 10.0 77 0.0032 11.9 1.1 41 191-235 78-119 (139)
6 3bid_A UPF0339 protein NMB1088 8.8 75 0.0031 12.0 0.5 11 4-14 35-45 (64)
7 3kwk_A Putative NADH dehydroge 7.5 49 0.0021 13.2 -0.9 24 136-159 131-154 (175)
8 1f5v_A Oxygen-insensitive NADP 7.4 51 0.0022 13.0 -0.8 77 135-219 135-214 (240)
9 2rf9_C ERBB receptor feedback 7.4 89 0.0037 11.5 0.4 20 82-101 46-65 (65)
10 1xc0_A Pardaxin P-4, PA4; BEND 7.1 88 0.0037 11.5 0.3 18 17-34 7-24 (33)
No 1
>3iol_B Glucagon; receptor-ligand complex, cell membrane, disulfide bond, G- protein coupled receptor, glycoprotein, membrane, polymorphism, receptor; HET: 10M; 2.10A {Homo sapiens} PDB: 1d0r_A
Probab=21.90 E-value=33 Score=14.28 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=17.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 54414455446778987986087
Q gi|254781189|r 213 RDISFTQYEKHACALVNWLEKGK 235 (252)
Q Consensus 213 rdisftqyekhacalvnwlekgk 235 (252)
.|+|----++-|-..|+||-+|+
T Consensus 8 sDvssyLe~qAakeFv~wL~~Gr 30 (31)
T 3iol_B 8 SDVSSYLEGQAAKEFIAWLVKGR 30 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 76899999999999999998068
No 2
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=13.47 E-value=59 Score=12.65 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 441445544677898798608742
Q gi|254781189|r 214 DISFTQYEKHACALVNWLEKGKFN 237 (252)
Q Consensus 214 disftqyekhacalvnwlekgkfn 237 (252)
|+|--.-++.|-..|+||-+||-.
T Consensus 9 D~s~yLe~~aakdFv~WL~ng~ps 32 (39)
T 1jrj_A 9 DLSKQMEEEAVRLFIEWLKNGGPS 32 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 699999999999999999828988
No 3
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION binding, metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=12.31 E-value=64 Score=12.43 Aligned_cols=23 Identities=35% Similarity=0.836 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 37799999999998744455654
Q gi|254781189|r 10 ILSIKRILKAILSRWRKSKLSAL 32 (252)
Q Consensus 10 ilsikrilkailsrwrksklsal 32 (252)
+++++|+++++...|+...+..+
T Consensus 5 ~~~l~r~~r~i~~~~~~~~~~~~ 27 (114)
T 2q67_A 5 LLTLKRMLRACLRAWKDKEFQVL 27 (114)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999989899999
No 4
>1zch_A Hypothetical oxidoreductase YCND; nitroreductase, NADH-oxidase; HET: FMN; 1.85A {Bacillus subtilis} SCOP: d.90.1.1
Probab=12.00 E-value=18 Score=15.92 Aligned_cols=80 Identities=15% Similarity=0.194 Sum_probs=45.3
Q ss_pred ECHHHHHHHHHCCHHHHHCCHHHHHHHHHH-HHHCCCCCCCEEECCCCCCCHHHHHHHCHHHHHHHHHHHHHHEECC--C
Q ss_conf 204888877607145542252578776531-1100266886354576585178886438789999974335332356--8
Q gi|254781189|r 134 IVPDFIHDLLDIPEEKRRLNTSYLTYVDRG-LLDVRSSETPVVYDNKYRPSAEAMRTICPTKLMKIFEDTISLYVDP--L 210 (252)
Q Consensus 134 ivpdfihdlldipeekrrlntsyltyvdrg-lldvrssetpvvydnkyrpsaeamrticptklmkifedtislyvdp--l 210 (252)
.-|+-+.++|+||+..+-+-.-.+-|-+.. -.-.|-.-.-||+.|+|++..+.. ...+-|++++.-|.+- -
T Consensus 140 ~~~~~v~e~L~lP~~~~~v~~l~iGyP~~~~~~kpR~p~e~vv~~~~y~~~~~~~------~~i~~yd~~~~~~~~~r~~ 213 (255)
T 1zch_A 140 GNPQELIELLELPKYVFPLSGLVIGHPADRSAKKPRLPQEAVNHQETYLNQDELT------SHIQAYDEQMSEYMNKRTN 213 (255)
T ss_dssp SSHHHHHHHTTCCTTEEEEEEEEEECBSCCCCCCCCCCHHHHSCSSSCCCHHHHH------HHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCCCCCHHHEEEEEECCCHHHHH------HHHHHHHHHHHHHHHHHHC
T ss_conf 6889999970919997899999823378888999989878977875517734458------9999999999999998415
Q ss_pred CCCCCCHHH
Q ss_conf 845441445
Q gi|254781189|r 211 TPRDISFTQ 219 (252)
Q Consensus 211 tprdisftq 219 (252)
..++-+++.
T Consensus 214 ~~~~~~w~~ 222 (255)
T 1zch_A 214 GKETRNWSQ 222 (255)
T ss_dssp TSCCCCHHH
T ss_pred CCCCCCHHH
T ss_conf 888887799
No 5
>2r18_A Capsid assembly protein VP3; helix, capsid protein, hydrolase, protease, serine protease, virion, viral protein; 2.30A {Infectious bursal disease virus} PDB: 2z7j_A
Probab=10.00 E-value=77 Score=11.95 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHHEECCCC-CCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 878999997433533235688-454414455446778987986087
Q gi|254781189|r 191 CPTKLMKIFEDTISLYVDPLT-PRDISFTQYEKHACALVNWLEKGK 235 (252)
Q Consensus 191 cptklmkifedtislyvdplt-prdisftqyekhacalvnwlekgk 235 (252)
-|++.+||-.-++|+|-+|-. |-.-+| |+ +.+-|---++|+
T Consensus 78 rP~~~~kIrrla~siyg~p~q~p~peef--i~--av~~v~~eN~Gr 119 (139)
T 2r18_A 78 RLASEEQILRAATSIYGAPGQAEPPQAF--ID--EVAKVYEINHGR 119 (139)
T ss_dssp CCCCHHHHHHHHHHHHCCGGGCCCCHHH--HH--HHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCHHH--HH--HHHHHHHHHCCC
T ss_conf 7346999999987523885569988899--99--999999997589
No 6
>3bid_A UPF0339 protein NMB1088; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Neisseria meningitidis MC58} SCOP: d.348.1.1
Probab=8.83 E-value=75 Score=12.01 Aligned_cols=11 Identities=9% Similarity=0.184 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q ss_conf 03443037799
Q gi|254781189|r 4 ASMRNGILSIK 14 (252)
Q Consensus 4 asmrngilsik 14 (252)
++..+||-|+|
T Consensus 35 ~~a~~gI~sVk 45 (64)
T 3bid_A 35 QNCQHAVDLLK 45 (64)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 7
>3kwk_A Putative NADH dehydrogenase/NAD(P)H nitroreductase; structural genomics, joint center for structural genomics, JCSG; HET: MSE FMN; 1.54A {Bacteroides thetaiotaomicron vpi-5482}
Probab=7.48 E-value=49 Score=13.16 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=15.6
Q ss_pred HHHHHHHHHCCHHHHHCCHHHHHH
Q ss_conf 488887760714554225257877
Q gi|254781189|r 136 PDFIHDLLDIPEEKRRLNTSYLTY 159 (252)
Q Consensus 136 pdfihdlldipeekrrlntsylty 159 (252)
++.+.++|+||+..+-+-.-.+-|
T Consensus 131 ~~~l~~~l~ip~~~~~~~~i~iGy 154 (175)
T 3kwk_A 131 MEVVRKYTHLPENILPLCVIPFGY 154 (175)
T ss_dssp HHHHHHHHTCCTTEEEEEEEEEES
T ss_pred HHHHHHHHCCCCCCEEEEEEEEEC
T ss_conf 499999829399988999999735
No 8
>1f5v_A Oxygen-insensitive NADPH nitroreductase; flavoprotein, oxidoreduction, nitrocompound, oxidoreductase; HET: FMN; 1.70A {Escherichia coli} SCOP: d.90.1.1
Probab=7.43 E-value=51 Score=13.04 Aligned_cols=77 Identities=17% Similarity=0.260 Sum_probs=45.7
Q ss_pred CHHHHHHHHHCCHHHHHCCHHHHHHHHHH-HHHCCCCCCCEEECCCCCCCHHHHHHHCHHHHHHHHHHHHHHEECCCC--
Q ss_conf 04888877607145542252578776531-110026688635457658517888643878999997433533235688--
Q gi|254781189|r 135 VPDFIHDLLDIPEEKRRLNTSYLTYVDRG-LLDVRSSETPVVYDNKYRPSAEAMRTICPTKLMKIFEDTISLYVDPLT-- 211 (252)
Q Consensus 135 vpdfihdlldipeekrrlntsyltyvdrg-lldvrssetpvvydnkyrpsaeamrticptklmkifedtislyvdplt-- 211 (252)
-++-+.++|++|+...-+-.-.+-|-+.. -.-.|-.-.-+|+.|+|..... .-..-|..++.-|-+--+
T Consensus 135 ~~~~v~~~L~lP~~~~~v~~l~iGyP~~~~~~kpR~P~~~vv~~~~y~~~~~--------~~~~~yd~~~~~~~~~r~~~ 206 (240)
T 1f5v_A 135 NIEAVTKLLKLPQHVLPLFGLCLGWPADNPDLKPRLPASILVHENSYQPLDK--------GALAQYDEQLAEYYLTRGSN 206 (240)
T ss_dssp GHHHHHHHTTCCTTEEEEEEEEEECBCCCCCCCCCCCHHHHEEESSCCCCCH--------HHHHHHHHHHHHHHHTTCSS
T ss_pred CHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCHHHEEEEEECCCCCH--------HHHHHHHHHHHHHHHHHCCC
T ss_conf 2899999829399978999999667688889999998889356105799888--------89999999999999973268
Q ss_pred CCCCCHHH
Q ss_conf 45441445
Q gi|254781189|r 212 PRDISFTQ 219 (252)
Q Consensus 212 prdisftq 219 (252)
.+.-+|++
T Consensus 207 ~~~~~w~~ 214 (240)
T 1f5v_A 207 NRRDTWSD 214 (240)
T ss_dssp CCCCCHHH
T ss_pred CCCCCHHH
T ss_conf 87787799
No 9
>2rf9_C ERBB receptor feedback inhibitor 1; kinase domain, inhibition, dimer, peptide, alternative splicing, anti-oncogene, ATP-binding, cell cycle; 3.50A {Homo sapiens}
Probab=7.39 E-value=89 Score=11.54 Aligned_cols=20 Identities=45% Similarity=0.469 Sum_probs=11.0
Q ss_pred CCCCCCCEEEEEEEECCCHH
Q ss_conf 34202101567776122056
Q gi|254781189|r 82 DIKYEEEQAIQLKIKEDSAS 101 (252)
Q Consensus 82 dikyeeeqaiqlkikedsas 101 (252)
|-||-.-++||-..+|.|+|
T Consensus 46 dPkYv~~k~~Q~Q~~egs~~ 65 (65)
T 2rf9_C 46 DPKYVSSKALQRQNSEGSAS 65 (65)
T ss_dssp CTTTBCCC------------
T ss_pred CCCCCCHHHHHHCCCCCCCC
T ss_conf 85412226665036667789
No 10
>1xc0_A Pardaxin P-4, PA4; BEND-helix-BEND-helix motif, signaling protein; NMR {Synthetic} SCOP: j.6.1.1 PDB: 2kns_A
Probab=7.12 E-value=88 Score=11.55 Aligned_cols=18 Identities=50% Similarity=0.394 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999874445565412
Q gi|254781189|r 17 LKAILSRWRKSKLSALGS 34 (252)
Q Consensus 17 lkailsrwrksklsalgs 34 (252)
-|.|-|..-|.-|||.||
T Consensus 7 pkiissplfktllsavgs 24 (33)
T 1xc0_A 7 PKIISSPLFKTLLSAVGS 24 (33)
T ss_dssp HHHTTTTTHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHH
T ss_conf 698735889999999988
Done!