BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254781189|ref|YP_003065602.1| hypothetical protein
CLIBASIA_05480 [Candidatus Liberibacter asiaticus str. psy62]
(252 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254781189|ref|YP_003065602.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040866|gb|ACT57662.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 252
Score = 520 bits (1339), Expect = e-146, Method: Compositional matrix adjust.
Identities = 252/252 (100%), Positives = 252/252 (100%)
Query: 1 MKKASMRNGILSIKRILKAILSRWRKSKLSALGSVGVFFVIFSLPLGALGLYEVHYLWVI 60
MKKASMRNGILSIKRILKAILSRWRKSKLSALGSVGVFFVIFSLPLGALGLYEVHYLWVI
Sbjct: 1 MKKASMRNGILSIKRILKAILSRWRKSKLSALGSVGVFFVIFSLPLGALGLYEVHYLWVI 60
Query: 61 FVSSLSLAIVAFGVEECLRLNDIKYEEEQAIQLKIKEDSASERLVKATEACACLTQYDRY 120
FVSSLSLAIVAFGVEECLRLNDIKYEEEQAIQLKIKEDSASERLVKATEACACLTQYDRY
Sbjct: 61 FVSSLSLAIVAFGVEECLRLNDIKYEEEQAIQLKIKEDSASERLVKATEACACLTQYDRY 120
Query: 121 EVIYNFGGPMYGVIVPDFIHDLLDIPEEKRRLNTSYLTYVDRGLLDVRSSETPVVYDNKY 180
EVIYNFGGPMYGVIVPDFIHDLLDIPEEKRRLNTSYLTYVDRGLLDVRSSETPVVYDNKY
Sbjct: 121 EVIYNFGGPMYGVIVPDFIHDLLDIPEEKRRLNTSYLTYVDRGLLDVRSSETPVVYDNKY 180
Query: 181 RPSAEAMRTICPTKLMKIFEDTISLYVDPLTPRDISFTQYEKHACALVNWLEKGKFNEMS 240
RPSAEAMRTICPTKLMKIFEDTISLYVDPLTPRDISFTQYEKHACALVNWLEKGKFNEMS
Sbjct: 181 RPSAEAMRTICPTKLMKIFEDTISLYVDPLTPRDISFTQYEKHACALVNWLEKGKFNEMS 240
Query: 241 IARKAFNRRSQR 252
IARKAFNRRSQR
Sbjct: 241 IARKAFNRRSQR 252
>gi|254780204|ref|YP_003064617.1| hypothetical protein CLIBASIA_00445 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254039881|gb|ACT56677.1| hypothetical protein CLIBASIA_00445 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 180
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 65 LSLAIVAFGVEECLRLNDIKYEEEQAIQLKIKEDSASERLVKATEACACLTQYDRY 120
LS+AI +EE + +NDIKYE +Q I K KE E L + +E ACL +RY
Sbjct: 101 LSIAIPT--IEEGMTMNDIKYERKQVISRKAKEKDLEESLYQISEFAACLEHPNRY 154
>gi|161522829|ref|YP_001585758.1| hypothetical protein Bmul_5803 [Burkholderia multivorans ATCC
17616]
gi|189348332|ref|YP_001941528.1| putative lipoprotein [Burkholderia multivorans ATCC 17616]
gi|160346382|gb|ABX19466.1| protein of unknown function DUF330 [Burkholderia multivorans ATCC
17616]
gi|189338470|dbj|BAG47538.1| putative lipoprotein [Burkholderia multivorans ATCC 17616]
Length = 236
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 47/112 (41%), Gaps = 11/112 (9%)
Query: 29 LSALGSVGVFFVIFSLPLGALGLYEVHYLWVIFVSSLSLAIVAFG----VEECLRLNDIK 84
LSA S V F S P GA G H W+I V +L +A A G V+ L DI
Sbjct: 24 LSACASPPVHFHTLSAPAGAGGDRAAHPAWLIDVQTLHVAAPADGNRLVVQRGPGLADIL 83
Query: 85 YEEEQAIQLKIK-EDSASERLVKATEACACLTQYDRYEVIYNFGGPMYGVIV 135
+E A L + D S R+ L D + V Y G P+Y V V
Sbjct: 84 EQERWAAPLGDEMRDGLSTRIASG------LGAIDVHRVAYPDGTPVYRVAV 129
>gi|254780203|ref|YP_003064616.1| hypothetical protein CLIBASIA_00440 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254039880|gb|ACT56676.1| hypothetical protein CLIBASIA_00440 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 82
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 177 DNKYRPSAEAMRTICPTKLMKIFEDTISLY-----VDPLTPRDISFTQYEKHACALVNWL 231
D KYRPS E +R P +L+K E +S + +P+ + Y H C L+ L
Sbjct: 3 DRKYRPSKEEVRDAFP-ELIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCELIELL 61
Query: 232 EKGKFNEMSIARKAFNRRSQ 251
+ F+ + I RK++N R
Sbjct: 62 KNKDFDGVEIERKSYNLRKN 81
>gi|195953062|ref|YP_002121352.1| hypothetical protein HY04AAS1_0687 [Hydrogenobaculum sp. Y04AAS1]
gi|195932674|gb|ACG57374.1| hypothetical protein HY04AAS1_0687 [Hydrogenobaculum sp. Y04AAS1]
Length = 992
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 129 PMYGVIVPDFIHDLL-DIPEEKRRLNT--SYLTYVDRGLLDVRSSETPVVYDNKYRPSAE 185
P Y V+VPDF+ +L +I EEK L+ SYL +++ LD + + V+ D +
Sbjct: 22 PDYPVLVPDFLAKVLFEIVEEKELLSIRKSYLKHLNLSYLDKKPKKVLVLAD------LD 75
Query: 186 AMRTICPTKLMKIFEDTISLYVDPLTPRDI 215
A ++C ++K E + V P + +DI
Sbjct: 76 AFSSVCLMPILKAIEKESQVDVYPFSNKDI 105
Searching..................................................done
Results from round 2
CONVERGED!
>gi|254781189|ref|YP_003065602.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040866|gb|ACT57662.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 252
Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats.
Identities = 252/252 (100%), Positives = 252/252 (100%)
Query: 1 MKKASMRNGILSIKRILKAILSRWRKSKLSALGSVGVFFVIFSLPLGALGLYEVHYLWVI 60
MKKASMRNGILSIKRILKAILSRWRKSKLSALGSVGVFFVIFSLPLGALGLYEVHYLWVI
Sbjct: 1 MKKASMRNGILSIKRILKAILSRWRKSKLSALGSVGVFFVIFSLPLGALGLYEVHYLWVI 60
Query: 61 FVSSLSLAIVAFGVEECLRLNDIKYEEEQAIQLKIKEDSASERLVKATEACACLTQYDRY 120
FVSSLSLAIVAFGVEECLRLNDIKYEEEQAIQLKIKEDSASERLVKATEACACLTQYDRY
Sbjct: 61 FVSSLSLAIVAFGVEECLRLNDIKYEEEQAIQLKIKEDSASERLVKATEACACLTQYDRY 120
Query: 121 EVIYNFGGPMYGVIVPDFIHDLLDIPEEKRRLNTSYLTYVDRGLLDVRSSETPVVYDNKY 180
EVIYNFGGPMYGVIVPDFIHDLLDIPEEKRRLNTSYLTYVDRGLLDVRSSETPVVYDNKY
Sbjct: 121 EVIYNFGGPMYGVIVPDFIHDLLDIPEEKRRLNTSYLTYVDRGLLDVRSSETPVVYDNKY 180
Query: 181 RPSAEAMRTICPTKLMKIFEDTISLYVDPLTPRDISFTQYEKHACALVNWLEKGKFNEMS 240
RPSAEAMRTICPTKLMKIFEDTISLYVDPLTPRDISFTQYEKHACALVNWLEKGKFNEMS
Sbjct: 181 RPSAEAMRTICPTKLMKIFEDTISLYVDPLTPRDISFTQYEKHACALVNWLEKGKFNEMS 240
Query: 241 IARKAFNRRSQR 252
IARKAFNRRSQR
Sbjct: 241 IARKAFNRRSQR 252
>gi|254780204|ref|YP_003064617.1| hypothetical protein CLIBASIA_00445 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254039881|gb|ACT56677.1| hypothetical protein CLIBASIA_00445 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 180
Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 57 LWVIFVSSLSLAIVAFGVEECLRLNDIKYEEEQAIQLKIKEDSASERLVKATEACACLTQ 116
L V + ++ L+I +EE + +NDIKYE +Q I K KE E L + +E ACL
Sbjct: 91 LVVTAILAILLSIAIPTIEEGMTMNDIKYERKQVISRKAKEKDLEESLYQISEFAACLEH 150
Query: 117 YDRY 120
+RY
Sbjct: 151 PNRY 154
>gi|254780203|ref|YP_003064616.1| hypothetical protein CLIBASIA_00440 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254039880|gb|ACT56676.1| hypothetical protein CLIBASIA_00440 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 82
Score = 45.0 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 177 DNKYRPSAEAMRTICPTKLMKIFEDTISLY-----VDPLTPRDISFTQYEKHACALVNWL 231
D KYRPS E +R P +L+K E +S + +P+ + Y H C L+ L
Sbjct: 3 DRKYRPSKEEVRDAFP-ELIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCELIELL 61
Query: 232 EKGKFNEMSIARKAFNRR 249
+ F+ + I RK++N R
Sbjct: 62 KNKDFDGVEIERKSYNLR 79
>gi|195953062|ref|YP_002121352.1| hypothetical protein HY04AAS1_0687 [Hydrogenobaculum sp. Y04AAS1]
gi|195932674|gb|ACG57374.1| hypothetical protein HY04AAS1_0687 [Hydrogenobaculum sp. Y04AAS1]
Length = 992
Score = 40.0 bits (92), Expect = 0.34, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 129 PMYGVIVPDFIHDLL-DIPEEKRRLN--TSYLTYVDRGLLDVRSSETPVVYDNKYRPSAE 185
P Y V+VPDF+ +L +I EEK L+ SYL +++ LD + + V+ D +
Sbjct: 22 PDYPVLVPDFLAKVLFEIVEEKELLSIRKSYLKHLNLSYLDKKPKKVLVLAD------LD 75
Query: 186 AMRTICPTKLMKIFEDTISLYVDPLTPRDI 215
A ++C ++K E + V P + +DI
Sbjct: 76 AFSSVCLMPILKAIEKESQVDVYPFSNKDI 105
>gi|254781124|ref|YP_003065537.1| hypothetical protein CLIBASIA_05130 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040801|gb|ACT57597.1| hypothetical protein CLIBASIA_05130 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 101
Score = 35.4 bits (80), Expect = 7.4, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 178 NKYRPSAEAMRTICPTKLMKIFEDTISLYVDPLT-PRDISF-----TQYEKHACALVNWL 231
N+YRP + +R P K++K E + YVDPL P +I Y H CAL+ L
Sbjct: 14 NQYRPLRKEVRNAFP-KILKSIEKALEPYVDPLIEPVEIGKEGMVDEGYRLHICALIKLL 72
Query: 232 E 232
E
Sbjct: 73 E 73
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.323 0.138 0.404
Lambda K H
0.267 0.0451 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,242,992,472
Number of Sequences: 14124377
Number of extensions: 235141996
Number of successful extensions: 468474
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 468467
Number of HSP's gapped (non-prelim): 18
length of query: 252
length of database: 4,842,793,630
effective HSP length: 136
effective length of query: 116
effective length of database: 2,921,878,358
effective search space: 338937889528
effective search space used: 338937889528
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 80 (35.3 bits)