BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781189|ref|YP_003065602.1| hypothetical protein
CLIBASIA_05480 [Candidatus Liberibacter asiaticus str. psy62]
         (252 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254781189|ref|YP_003065602.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040866|gb|ACT57662.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 252

 Score =  524 bits (1351), Expect = e-147,   Method: Composition-based stats.
 Identities = 252/252 (100%), Positives = 252/252 (100%)

Query: 1   MKKASMRNGILSIKRILKAILSRWRKSKLSALGSVGVFFVIFSLPLGALGLYEVHYLWVI 60
           MKKASMRNGILSIKRILKAILSRWRKSKLSALGSVGVFFVIFSLPLGALGLYEVHYLWVI
Sbjct: 1   MKKASMRNGILSIKRILKAILSRWRKSKLSALGSVGVFFVIFSLPLGALGLYEVHYLWVI 60

Query: 61  FVSSLSLAIVAFGVEECLRLNDIKYEEEQAIQLKIKEDSASERLVKATEACACLTQYDRY 120
           FVSSLSLAIVAFGVEECLRLNDIKYEEEQAIQLKIKEDSASERLVKATEACACLTQYDRY
Sbjct: 61  FVSSLSLAIVAFGVEECLRLNDIKYEEEQAIQLKIKEDSASERLVKATEACACLTQYDRY 120

Query: 121 EVIYNFGGPMYGVIVPDFIHDLLDIPEEKRRLNTSYLTYVDRGLLDVRSSETPVVYDNKY 180
           EVIYNFGGPMYGVIVPDFIHDLLDIPEEKRRLNTSYLTYVDRGLLDVRSSETPVVYDNKY
Sbjct: 121 EVIYNFGGPMYGVIVPDFIHDLLDIPEEKRRLNTSYLTYVDRGLLDVRSSETPVVYDNKY 180

Query: 181 RPSAEAMRTICPTKLMKIFEDTISLYVDPLTPRDISFTQYEKHACALVNWLEKGKFNEMS 240
           RPSAEAMRTICPTKLMKIFEDTISLYVDPLTPRDISFTQYEKHACALVNWLEKGKFNEMS
Sbjct: 181 RPSAEAMRTICPTKLMKIFEDTISLYVDPLTPRDISFTQYEKHACALVNWLEKGKFNEMS 240

Query: 241 IARKAFNRRSQR 252
           IARKAFNRRSQR
Sbjct: 241 IARKAFNRRSQR 252


>gi|254780204|ref|YP_003064617.1| hypothetical protein CLIBASIA_00445 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254039881|gb|ACT56677.1| hypothetical protein CLIBASIA_00445 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 180

 Score = 46.9 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 36/64 (56%)

Query: 57  LWVIFVSSLSLAIVAFGVEECLRLNDIKYEEEQAIQLKIKEDSASERLVKATEACACLTQ 116
           L V  + ++ L+I    +EE + +NDIKYE +Q I  K KE    E L + +E  ACL  
Sbjct: 91  LVVTAILAILLSIAIPTIEEGMTMNDIKYERKQVISRKAKEKDLEESLYQISEFAACLEH 150

Query: 117 YDRY 120
            +RY
Sbjct: 151 PNRY 154


>gi|254780203|ref|YP_003064616.1| hypothetical protein CLIBASIA_00440 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254039880|gb|ACT56676.1| hypothetical protein CLIBASIA_00440 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 82

 Score = 45.0 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 177 DNKYRPSAEAMRTICPTKLMKIFEDTISLY-----VDPLTPRDISFTQYEKHACALVNWL 231
           D KYRPS E +R   P +L+K  E  +S +      +P+      +  Y  H C L+  L
Sbjct: 3   DRKYRPSKEEVRDAFP-ELIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCELIELL 61

Query: 232 EKGKFNEMSIARKAFNRR 249
           +   F+ + I RK++N R
Sbjct: 62  KNKDFDGVEIERKSYNLR 79


>gi|195953062|ref|YP_002121352.1| hypothetical protein HY04AAS1_0687 [Hydrogenobaculum sp. Y04AAS1]
 gi|195932674|gb|ACG57374.1| hypothetical protein HY04AAS1_0687 [Hydrogenobaculum sp. Y04AAS1]
          Length = 992

 Score = 40.0 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 9/90 (10%)

Query: 129 PMYGVIVPDFIHDLL-DIPEEKRRLN--TSYLTYVDRGLLDVRSSETPVVYDNKYRPSAE 185
           P Y V+VPDF+  +L +I EEK  L+   SYL +++   LD +  +  V+ D       +
Sbjct: 22  PDYPVLVPDFLAKVLFEIVEEKELLSIRKSYLKHLNLSYLDKKPKKVLVLAD------LD 75

Query: 186 AMRTICPTKLMKIFEDTISLYVDPLTPRDI 215
           A  ++C   ++K  E    + V P + +DI
Sbjct: 76  AFSSVCLMPILKAIEKESQVDVYPFSNKDI 105


>gi|254781124|ref|YP_003065537.1| hypothetical protein CLIBASIA_05130 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040801|gb|ACT57597.1| hypothetical protein CLIBASIA_05130 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 101

 Score = 35.4 bits (80), Expect = 7.4,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 7/61 (11%)

Query: 178 NKYRPSAEAMRTICPTKLMKIFEDTISLYVDPLT-PRDISF-----TQYEKHACALVNWL 231
           N+YRP  + +R   P K++K  E  +  YVDPL  P +I         Y  H CAL+  L
Sbjct: 14  NQYRPLRKEVRNAFP-KILKSIEKALEPYVDPLIEPVEIGKEGMVDEGYRLHICALIKLL 72

Query: 232 E 232
           E
Sbjct: 73  E 73


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.323    0.138    0.404 

Lambda     K      H
   0.267   0.0451    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,967,409,464
Number of Sequences: 14124377
Number of extensions: 143633793
Number of successful extensions: 264983
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 264979
Number of HSP's gapped (non-prelim): 9
length of query: 252
length of database: 4,842,793,630
effective HSP length: 136
effective length of query: 116
effective length of database: 2,921,878,358
effective search space: 338937889528
effective search space used: 338937889528
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 80 (35.3 bits)