RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781189|ref|YP_003065602.1| hypothetical protein
CLIBASIA_05480 [Candidatus Liberibacter asiaticus str. psy62]
         (252 letters)



>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter,
           sugar transport, SGLT, ION transport, membrane, sodium
           transport, symport; HET: GAL; 2.70A {Vibrio
           parahaemolyticus} (A:)
          Length = 530

 Score = 27.7 bits (60), Expect = 1.6
 Identities = 4/34 (11%), Positives = 9/34 (26%)

Query: 41  IFSLPLGALGLYEVHYLWVIFVSSLSLAIVAFGV 74
           I       +     +      +  L++    F V
Sbjct: 482 ISVTSSMFVTDRSFNIAAYGIMIVLAVLYTLFWV 515


>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane
          protease, CBS domain, hydrolase, metal-binding,
          transmembrane; 3.30A {Methanocaldococcus jannaschii}
          (A:145-224)
          Length = 80

 Score = 25.4 bits (56), Expect = 8.1
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 15 RILKAILSRWRKSKLSALGSVGVFFVIFSLPLGALGLYEVHYLWVIFV 62
          RIL+AILS+      S   +  +     +L +   GL     + +I V
Sbjct: 7  RILRAILSKKYGYLKSTKIAANIGKS-LALIMLLFGLL-SMNIILILV 52


>2z6r_A Diphthine synthase; methyltransferase,
           S-adenosyl-L-methionine; HET: SAH MES; 1.50A {Pyrococcus
           horikoshii OT3} PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A*
           2e4r_A* 2owg_A* 2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A*
           2el3_A* 2el0_A* 2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A*
           2pcg_A* 2el1_A* ... (A:123-265)
          Length = 143

 Score = 25.4 bits (56), Expect = 8.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 124 YNFGGPMYGVIVPDFIHDL 142
            +FG P + +IVP  +H +
Sbjct: 105 EDFGDPPHILIVPGKLHIV 123


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.323    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0536    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,913,155
Number of extensions: 84011
Number of successful extensions: 183
Number of sequences better than 10.0: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 8
Length of query: 252
Length of database: 4,956,049
Length adjustment: 86
Effective length of query: 166
Effective length of database: 2,048,819
Effective search space: 340103954
Effective search space used: 340103954
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.6 bits)