RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781189|ref|YP_003065602.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter asiaticus str. psy62] (252 letters) >3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION transport, membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} (A:) Length = 530 Score = 27.7 bits (60), Expect = 1.6 Identities = 4/34 (11%), Positives = 9/34 (26%) Query: 41 IFSLPLGALGLYEVHYLWVIFVSSLSLAIVAFGV 74 I + + + L++ F V Sbjct: 482 ISVTSSMFVTDRSFNIAAYGIMIVLAVLYTLFWV 515 >3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii} (A:145-224) Length = 80 Score = 25.4 bits (56), Expect = 8.1 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 2/48 (4%) Query: 15 RILKAILSRWRKSKLSALGSVGVFFVIFSLPLGALGLYEVHYLWVIFV 62 RIL+AILS+ S + + +L + GL + +I V Sbjct: 7 RILRAILSKKYGYLKSTKIAANIGKS-LALIMLLFGLL-SMNIILILV 52 >2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine; HET: SAH MES; 1.50A {Pyrococcus horikoshii OT3} PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A* 2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A* 2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A* ... (A:123-265) Length = 143 Score = 25.4 bits (56), Expect = 8.6 Identities = 7/19 (36%), Positives = 12/19 (63%) Query: 124 YNFGGPMYGVIVPDFIHDL 142 +FG P + +IVP +H + Sbjct: 105 EDFGDPPHILIVPGKLHIV 123 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.323 0.138 0.404 Gapped Lambda K H 0.267 0.0536 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,913,155 Number of extensions: 84011 Number of successful extensions: 183 Number of sequences better than 10.0: 1 Number of HSP's gapped: 183 Number of HSP's successfully gapped: 8 Length of query: 252 Length of database: 4,956,049 Length adjustment: 86 Effective length of query: 166 Effective length of database: 2,048,819 Effective search space: 340103954 Effective search space used: 340103954 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 53 (24.6 bits)