RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781189|ref|YP_003065602.1| hypothetical protein
CLIBASIA_05480 [Candidatus Liberibacter asiaticus str. psy62]
(252 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 51.5 bits (123), Expect = 2e-07
Identities = 62/433 (14%), Positives = 113/433 (26%), Gaps = 202/433 (46%)
Query: 1 MKKASMRNGILSIKRILKAIL---------SRWRKSKLSALGS----------------- 34
M S R LS + +L S+ ++ L
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 35 VGVF--FVIFSLPLGALGLYEVHYLWVIFVSSLSLAIVAFGVEECLRLNDIK------YE 86
VG F +V + +G ++ L+L + F L NDI +
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFD---------QVLNLCLTEF-ENCYLEGNDIHALAAKLLQ 110
Query: 87 EEQAIQLKIKEDSASERLVKA-TEACACLTQ-YDRYEV-------------IYN-FGGP- 129
E +K K L+K A + +D+ + FGG
Sbjct: 111 ENDTTLVKTK------ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164
Query: 130 --------------MYGVIVPDFIH------------------------DL---LDIPEE 148
Y V+V D I ++ L+ P
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS- 223
Query: 149 KRRLNTSYLTYVDR-----GLL-----------------DVRS--------SETPVV--- 175
+ YL + G++ ++RS S+ V
Sbjct: 224 -NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 176 ------YDNKYRPSAEAMRTI------C----PTKLM--KIFEDTISLYVDPLTP----R 213
+++ + +A+ + C P + I ED++ +P
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Query: 214 DISFTQYEKH--------------ACALVN-------------------WLEKGKF-NEM 239
+++ Q + + +LVN L K K + +
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL 402
Query: 240 SIARKAFNRRSQR 252
+R F S+R
Sbjct: 403 DQSRIPF---SER 412
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 40.8 bits (94), Expect = 3e-04
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 6/28 (21%)
Query: 87 EEQAIQ-----LKI-KEDSASERLVKAT 108
E+QA++ LK+ +DSA +KAT
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKAT 45
Score = 29.2 bits (64), Expect = 0.95
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 9/28 (32%)
Query: 185 EAMRTICPTKLMKIFEDTISLYVDPLTP 212
+A++ KL + ++ LY D P
Sbjct: 20 QALK-----KL----QASLKLYADDSAP 38
Score = 27.3 bits (59), Expect = 4.0
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 4/23 (17%)
Query: 74 VEECLRLNDIKYEEEQAIQLKIK 96
++ L+L Y ++ A L IK
Sbjct: 25 LQASLKL----YADDSAPALAIK 43
Score = 26.5 bits (57), Expect = 6.8
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 11/31 (35%)
Query: 148 EK---RRLNTSYLTYVDRGLLDVRSSETPVV 175
EK ++L S Y D D S+ P +
Sbjct: 18 EKQALKKLQASLKLYAD----D--SA--PAL 40
>2q67_A Potassium channel protein; inverted teepee, helix bundle,
tetramer, central cavity, ION binding, metal transport,
membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A
2q6a_A 2q69_A 2ahy_A 2ahz_A
Length = 114
Score = 29.4 bits (66), Expect = 0.89
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 10 ILSIKRILKAILSRWRKSKLSALGSVGVFFVIFSLPLGALGLYEVH 55
+L++KR+L+A L W+ + L + + +I G + V
Sbjct: 5 LLTLKRMLRACLRAWKDKEFQVLFVLTILTLIS----GTIFYSTVE 46
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, alternative
splicing, cell membrane, glycoprotein, ION transport,
membrane; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Length = 823
Score = 27.6 bits (60), Expect = 2.6
Identities = 14/60 (23%), Positives = 23/60 (38%)
Query: 20 ILSRWRKSKLSALGSVGVFFVIFSLPLGALGLYEVHYLWVIFVSSLSLAIVAFGVEECLR 79
+L + + G G AL L V ++ I V L LA++ +E C +
Sbjct: 749 LLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYK 808
>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS
domain, hydrolase, metal-binding, transmembrane; 3.30A
{Methanocaldococcus jannaschii}
Length = 224
Score = 26.1 bits (57), Expect = 8.3
Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 15 RILKAILSRWRKSKLSALGSVGVFFVIFSLPLGALGLYEVHYLWVIF 61
RIL+AILS+ S + + + + + GL ++ + ++
Sbjct: 151 RILRAILSKKYGYLKSTKIAANIGKSLALI-MLLFGLLSMNIILILV 196
>3gb5_A IYD-1, iodotyrosine dehalogenase 1; iodide salvage, flavoprotein,
FMN, membrane, NADP, oxidoreductase, transmembrane; HET:
FMN; 2.00A {Mus musculus} PDB: 3gfd_A* 3gh8_A*
Length = 259
Score = 26.0 bits (56), Expect = 8.9
Identities = 5/41 (12%), Positives = 11/41 (26%)
Query: 110 ACACLTQYDRYEVIYNFGGPMYGVIVPDFIHDLLDIPEEKR 150
+ AC + + + LL P ++
Sbjct: 182 SIACGLLLAALQNAGLVTVTTTPLNCGPRLRVLLGRPSHEK 222
>1f6g_A Voltage-gated potassium channel; integral membrane protein,
cytoplasmic domains, proton transport, membrane
protein; NMR {Streptomyces lividans} SCOP: f.14.1.1
Length = 160
Score = 25.7 bits (56), Expect = 9.2
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 6 MRNGILSIKRILKAILSR-WRKSKLSALGSVGVFFVIFSLPLGALGLY 52
M +G+L+ R++K +L R +A G+ V VI L G+
Sbjct: 4 MLSGLLA--RLVKLLLGRHGSALHWAAAGAATVLLVIVLL-AGSYLAV 48
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel,
alpha+beta, riken structural genomics/proteomics
initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata}
PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Length = 548
Score = 26.0 bits (56), Expect = 9.2
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 206 YVDPLTPRDISFTQYEKHACALVNWLEK 233
+ + +T D S+ +Y + +C L L+
Sbjct: 44 FTNAVTGVDYSYAEYLEKSCCLGKALQN 71
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.323 0.138 0.404
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,183,552
Number of extensions: 99526
Number of successful extensions: 222
Number of sequences better than 10.0: 1
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 15
Length of query: 252
Length of database: 5,693,230
Length adjustment: 90
Effective length of query: 162
Effective length of database: 3,511,270
Effective search space: 568825740
Effective search space used: 568825740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.7 bits)