BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781189|ref|YP_003065602.1| hypothetical protein
CLIBASIA_05480 [Candidatus Liberibacter asiaticus str. psy62]
         (252 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781189|ref|YP_003065602.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 252

 Score =  520 bits (1339), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 252/252 (100%), Positives = 252/252 (100%)

Query: 1   MKKASMRNGILSIKRILKAILSRWRKSKLSALGSVGVFFVIFSLPLGALGLYEVHYLWVI 60
           MKKASMRNGILSIKRILKAILSRWRKSKLSALGSVGVFFVIFSLPLGALGLYEVHYLWVI
Sbjct: 1   MKKASMRNGILSIKRILKAILSRWRKSKLSALGSVGVFFVIFSLPLGALGLYEVHYLWVI 60

Query: 61  FVSSLSLAIVAFGVEECLRLNDIKYEEEQAIQLKIKEDSASERLVKATEACACLTQYDRY 120
           FVSSLSLAIVAFGVEECLRLNDIKYEEEQAIQLKIKEDSASERLVKATEACACLTQYDRY
Sbjct: 61  FVSSLSLAIVAFGVEECLRLNDIKYEEEQAIQLKIKEDSASERLVKATEACACLTQYDRY 120

Query: 121 EVIYNFGGPMYGVIVPDFIHDLLDIPEEKRRLNTSYLTYVDRGLLDVRSSETPVVYDNKY 180
           EVIYNFGGPMYGVIVPDFIHDLLDIPEEKRRLNTSYLTYVDRGLLDVRSSETPVVYDNKY
Sbjct: 121 EVIYNFGGPMYGVIVPDFIHDLLDIPEEKRRLNTSYLTYVDRGLLDVRSSETPVVYDNKY 180

Query: 181 RPSAEAMRTICPTKLMKIFEDTISLYVDPLTPRDISFTQYEKHACALVNWLEKGKFNEMS 240
           RPSAEAMRTICPTKLMKIFEDTISLYVDPLTPRDISFTQYEKHACALVNWLEKGKFNEMS
Sbjct: 181 RPSAEAMRTICPTKLMKIFEDTISLYVDPLTPRDISFTQYEKHACALVNWLEKGKFNEMS 240

Query: 241 IARKAFNRRSQR 252
           IARKAFNRRSQR
Sbjct: 241 IARKAFNRRSQR 252


>gi|254780204|ref|YP_003064617.1| hypothetical protein CLIBASIA_00445 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 180

 Score = 45.8 bits (107), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 65  LSLAIVAFGVEECLRLNDIKYEEEQAIQLKIKEDSASERLVKATEACACLTQYDRY 120
           LS+AI    +EE + +NDIKYE +Q I  K KE    E L + +E  ACL   +RY
Sbjct: 101 LSIAIPT--IEEGMTMNDIKYERKQVISRKAKEKDLEESLYQISEFAACLEHPNRY 154


>gi|254780203|ref|YP_003064616.1| hypothetical protein CLIBASIA_00440 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 82

 Score = 44.3 bits (103), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 6/80 (7%)

Query: 177 DNKYRPSAEAMRTICPTKLMKIFEDTISLY-----VDPLTPRDISFTQYEKHACALVNWL 231
           D KYRPS E +R   P +L+K  E  +S +      +P+      +  Y  H C L+  L
Sbjct: 3   DRKYRPSKEEVRDAFP-ELIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCELIELL 61

Query: 232 EKGKFNEMSIARKAFNRRSQ 251
           +   F+ + I RK++N R  
Sbjct: 62  KNKDFDGVEIERKSYNLRKN 81


>gi|254781125|ref|YP_003065538.1| hypothetical protein CLIBASIA_05135 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 59

 Score = 32.0 bits (71), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 6/48 (12%)

Query: 109 EACACLTQYDRYEVIYNFGGPMYGVI----VPDFIHDLLDIPEEKRRL 152
           E   CL   +RY +  +   P Y VI    VP FI++ L+IP +KR++
Sbjct: 6   EYIRCLNDPNRYRL--SAKDPHYNVIFRDEVPSFIYETLNIPADKRKM 51


>gi|254780458|ref|YP_003064871.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 449

 Score = 25.0 bits (53), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query: 73  GVEECLRLNDIKYEEE 88
           G+ EC  +N+I+YE E
Sbjct: 358 GIIECFNINNIQYERE 373


>gi|254781075|ref|YP_003065488.1| hypothetical protein CLIBASIA_04885 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 266

 Score = 23.9 bits (50), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 6/53 (11%)

Query: 200 EDTISLYVDPLTPRDI------SFTQYEKHACALVNWLEKGKFNEMSIARKAF 246
           ED +S Y     P D+         +Y  H   L  W+ +G+     IAR+ +
Sbjct: 209 EDILSRYSIESIPLDLPEMSQDEAIKYINHVYLLGKWISRGEIQRSQIARREY 261


>gi|254780815|ref|YP_003065228.1| hypothetical protein CLIBASIA_03530 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 232

 Score = 23.5 bits (49), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 179 KYRPSAEAMRTICP--TKLMKIFEDTISLYVDPLTPRDISFTQYEKHACALVNWLEKGK 235
           K + + +++  + P  T+L K+  D +S+Y D   P+D    +      A+V+   +GK
Sbjct: 66  KKKDNLDSINELFPIGTRLNKVMRDIVSVYTD-FDPKDF-LNEARNSYEAIVDSFFEGK 122


>537021.9.peg.905_1 
          Length = 56

 Score = 22.7 bits (47), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 207 VDPLTPRDISFTQYEKHACALVNWLEKGKFNEMSIARKAFN 247
           +D L    +   +Y KH  +++  L K ++ +M   RK++N
Sbjct: 4   IDGLGVHGVD-VEYVKHIESIMASLRKEEYEKMKEVRKSYN 43


>gi|254780982|ref|YP_003065395.1| putative homoserine/homoserine lactoneefflux protein [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 202

 Score = 22.3 bits (46), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 10 ILSIKRILKAILSRWRKSKLSALGS-VGVFFVIFSLPLGALGLYEVHY 56
          IL+I   L+     WR +K+  LG    VF ++ S+ +G   L ++ Y
Sbjct: 25 ILTINHALQ---HGWRPNKILILGQETAVFIIMLSITMGTKFLSQLAY 69


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.138    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 156,471
Number of Sequences: 1233
Number of extensions: 6262
Number of successful extensions: 23
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 14
length of query: 252
length of database: 328,796
effective HSP length: 72
effective length of query: 180
effective length of database: 240,020
effective search space: 43203600
effective search space used: 43203600
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 37 (18.9 bits)