BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781189|ref|YP_003065602.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter asiaticus str. psy62] (252 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781189|ref|YP_003065602.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter asiaticus str. psy62] Length = 252 Score = 520 bits (1339), Expect = e-149, Method: Compositional matrix adjust. Identities = 252/252 (100%), Positives = 252/252 (100%) Query: 1 MKKASMRNGILSIKRILKAILSRWRKSKLSALGSVGVFFVIFSLPLGALGLYEVHYLWVI 60 MKKASMRNGILSIKRILKAILSRWRKSKLSALGSVGVFFVIFSLPLGALGLYEVHYLWVI Sbjct: 1 MKKASMRNGILSIKRILKAILSRWRKSKLSALGSVGVFFVIFSLPLGALGLYEVHYLWVI 60 Query: 61 FVSSLSLAIVAFGVEECLRLNDIKYEEEQAIQLKIKEDSASERLVKATEACACLTQYDRY 120 FVSSLSLAIVAFGVEECLRLNDIKYEEEQAIQLKIKEDSASERLVKATEACACLTQYDRY Sbjct: 61 FVSSLSLAIVAFGVEECLRLNDIKYEEEQAIQLKIKEDSASERLVKATEACACLTQYDRY 120 Query: 121 EVIYNFGGPMYGVIVPDFIHDLLDIPEEKRRLNTSYLTYVDRGLLDVRSSETPVVYDNKY 180 EVIYNFGGPMYGVIVPDFIHDLLDIPEEKRRLNTSYLTYVDRGLLDVRSSETPVVYDNKY Sbjct: 121 EVIYNFGGPMYGVIVPDFIHDLLDIPEEKRRLNTSYLTYVDRGLLDVRSSETPVVYDNKY 180 Query: 181 RPSAEAMRTICPTKLMKIFEDTISLYVDPLTPRDISFTQYEKHACALVNWLEKGKFNEMS 240 RPSAEAMRTICPTKLMKIFEDTISLYVDPLTPRDISFTQYEKHACALVNWLEKGKFNEMS Sbjct: 181 RPSAEAMRTICPTKLMKIFEDTISLYVDPLTPRDISFTQYEKHACALVNWLEKGKFNEMS 240 Query: 241 IARKAFNRRSQR 252 IARKAFNRRSQR Sbjct: 241 IARKAFNRRSQR 252 >gi|254780204|ref|YP_003064617.1| hypothetical protein CLIBASIA_00445 [Candidatus Liberibacter asiaticus str. psy62] Length = 180 Score = 45.8 bits (107), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 2/56 (3%) Query: 65 LSLAIVAFGVEECLRLNDIKYEEEQAIQLKIKEDSASERLVKATEACACLTQYDRY 120 LS+AI +EE + +NDIKYE +Q I K KE E L + +E ACL +RY Sbjct: 101 LSIAIPT--IEEGMTMNDIKYERKQVISRKAKEKDLEESLYQISEFAACLEHPNRY 154 >gi|254780203|ref|YP_003064616.1| hypothetical protein CLIBASIA_00440 [Candidatus Liberibacter asiaticus str. psy62] Length = 82 Score = 44.3 bits (103), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 6/80 (7%) Query: 177 DNKYRPSAEAMRTICPTKLMKIFEDTISLY-----VDPLTPRDISFTQYEKHACALVNWL 231 D KYRPS E +R P +L+K E +S + +P+ + Y H C L+ L Sbjct: 3 DRKYRPSKEEVRDAFP-ELIKALEKGLSTFDVEPLKNPVKSHGKGYESYISHVCELIELL 61 Query: 232 EKGKFNEMSIARKAFNRRSQ 251 + F+ + I RK++N R Sbjct: 62 KNKDFDGVEIERKSYNLRKN 81 >gi|254781125|ref|YP_003065538.1| hypothetical protein CLIBASIA_05135 [Candidatus Liberibacter asiaticus str. psy62] Length = 59 Score = 32.0 bits (71), Expect = 0.011, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 6/48 (12%) Query: 109 EACACLTQYDRYEVIYNFGGPMYGVI----VPDFIHDLLDIPEEKRRL 152 E CL +RY + + P Y VI VP FI++ L+IP +KR++ Sbjct: 6 EYIRCLNDPNRYRL--SAKDPHYNVIFRDEVPSFIYETLNIPADKRKM 51 >gi|254780458|ref|YP_003064871.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 449 Score = 25.0 bits (53), Expect = 1.4, Method: Compositional matrix adjust. Identities = 8/16 (50%), Positives = 12/16 (75%) Query: 73 GVEECLRLNDIKYEEE 88 G+ EC +N+I+YE E Sbjct: 358 GIIECFNINNIQYERE 373 >gi|254781075|ref|YP_003065488.1| hypothetical protein CLIBASIA_04885 [Candidatus Liberibacter asiaticus str. psy62] Length = 266 Score = 23.9 bits (50), Expect = 3.1, Method: Compositional matrix adjust. Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 6/53 (11%) Query: 200 EDTISLYVDPLTPRDI------SFTQYEKHACALVNWLEKGKFNEMSIARKAF 246 ED +S Y P D+ +Y H L W+ +G+ IAR+ + Sbjct: 209 EDILSRYSIESIPLDLPEMSQDEAIKYINHVYLLGKWISRGEIQRSQIARREY 261 >gi|254780815|ref|YP_003065228.1| hypothetical protein CLIBASIA_03530 [Candidatus Liberibacter asiaticus str. psy62] Length = 232 Score = 23.5 bits (49), Expect = 4.0, Method: Compositional matrix adjust. Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 4/59 (6%) Query: 179 KYRPSAEAMRTICP--TKLMKIFEDTISLYVDPLTPRDISFTQYEKHACALVNWLEKGK 235 K + + +++ + P T+L K+ D +S+Y D P+D + A+V+ +GK Sbjct: 66 KKKDNLDSINELFPIGTRLNKVMRDIVSVYTD-FDPKDF-LNEARNSYEAIVDSFFEGK 122 >537021.9.peg.905_1 Length = 56 Score = 22.7 bits (47), Expect = 6.7, Method: Compositional matrix adjust. Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Query: 207 VDPLTPRDISFTQYEKHACALVNWLEKGKFNEMSIARKAFN 247 +D L + +Y KH +++ L K ++ +M RK++N Sbjct: 4 IDGLGVHGVD-VEYVKHIESIMASLRKEEYEKMKEVRKSYN 43 >gi|254780982|ref|YP_003065395.1| putative homoserine/homoserine lactoneefflux protein [Candidatus Liberibacter asiaticus str. psy62] Length = 202 Score = 22.3 bits (46), Expect = 8.5, Method: Compositional matrix adjust. Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%) Query: 10 ILSIKRILKAILSRWRKSKLSALGS-VGVFFVIFSLPLGALGLYEVHY 56 IL+I L+ WR +K+ LG VF ++ S+ +G L ++ Y Sbjct: 25 ILTINHALQ---HGWRPNKILILGQETAVFIIMLSITMGTKFLSQLAY 69 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.323 0.138 0.404 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 156,471 Number of Sequences: 1233 Number of extensions: 6262 Number of successful extensions: 23 Number of sequences better than 100.0: 14 Number of HSP's better than 100.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 14 length of query: 252 length of database: 328,796 effective HSP length: 72 effective length of query: 180 effective length of database: 240,020 effective search space: 43203600 effective search space used: 43203600 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 37 (18.9 bits)