RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781190|ref|YP_003065603.1| hypothetical protein
CLIBASIA_05485 [Candidatus Liberibacter asiaticus str. psy62]
(233 letters)
>gnl|CDD|149686 pfam08707, PriCT_2, Primase C terminal 2 (PriCT-2). This alpha
helical domain is found at the C terminal of primases.
Length = 74
Score = 42.3 bits (100), Expect = 1e-04
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 184 GSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233
+D W+ V MA+ +E EG E+ EW YD KWDSF
Sbjct: 13 DDYDSWLRVGMALKHEF--GEEGLELWDEWSAKSSKYDPGECERKWDSFK 60
>gnl|CDD|182335 PRK10252, entF, enterobactin synthase subunit F; Provisional.
Length = 1296
Score = 30.0 bits (68), Expect = 0.55
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 85 HLEFLAYGQQFVAYNIHPKTQRAY---TWSIAPHALKVEELPLLTPDEVEYFFEFFDT 139
+E LA Q++ + +R A AL ++ +L P E + T
Sbjct: 394 SIEILANPQRYDEATLIAHAERLKALIAQFAADPALLCGDVDILLPGEYAQLAQVNAT 451
>gnl|CDD|181491 PRK08589, PRK08589, short chain dehydrogenase; Validated.
Length = 272
Score = 28.2 bits (63), Expect = 2.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 27 AFDVDVLDEQVVDRFNNEFQSCCGK 51
A+ VD+ DEQ V F +E + G+
Sbjct: 58 AYHVDISDEQQVKDFASEIKEQFGR 82
>gnl|CDD|177893 PLN02251, PLN02251, pyrophosphate-dependent phosphofructokinase.
Length = 568
Score = 27.8 bits (62), Expect = 2.5
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 64 MLFRMQETNLKKQKSEEKIQGHLE----FLAY 91
ML +M ET L+K+K E +GH + F Y
Sbjct: 410 MLIQMVETELEKRKQEGSYKGHFKGQSHFFGY 441
>gnl|CDD|178779 PLN03241, PLN03241, magnesium chelatase subunit H; Provisional.
Length = 1353
Score = 27.5 bits (61), Expect = 2.9
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 77 KSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTW 110
K E+K+ G+L FL G + + K W
Sbjct: 196 KEEDKLVGYLSFLKIGPALLKFVPGEKASDLRNW 229
>gnl|CDD|150725 pfam10083, DUF2321, Uncharacterized protein conserved in bacteria
(DUF2321). Members of this family of hypothetical
bacterial proteins have no known function.
Length = 158
Score = 27.6 bits (61), Expect = 3.1
Identities = 20/85 (23%), Positives = 29/85 (34%), Gaps = 8/85 (9%)
Query: 70 ETNLKKQKSEEKIQGHL---EFLAYGQQFVAYNIHPKTQRAYTW---SIAPHALKVEELP 123
T I+G L G + A + + + W + +EE
Sbjct: 37 ATITSCPHCSTPIRGFYYVDGVLGLGSDYDAPSYCHNCGKPFPWTKRKLEAANELIEEDD 96
Query: 124 LLTPDEVEYFFEFFDTIT--TPRDK 146
L+PDE E F +T TPR K
Sbjct: 97 NLSPDEKEQFQADLPDLTVETPRTK 121
>gnl|CDD|179835 PRK04350, PRK04350, thymidine phosphorylase; Provisional.
Length = 490
Score = 26.7 bits (60), Expect = 5.3
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 162 NRRYTNIEIRAFLS 175
RY++IE+ AFL+
Sbjct: 108 AGRYSDIELSAFLT 121
>gnl|CDD|180493 PRK06259, PRK06259, succinate dehydrogenase/fumarate reductase
iron-sulfur subunit; Provisional.
Length = 486
Score = 26.5 bits (59), Expect = 6.5
Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 10/31 (32%)
Query: 28 FDVDVLDEQVVDRFNNEFQSCCGKPISRVGQ 58
V + QV CCG P+ R GQ
Sbjct: 291 ISVIIPKNQV----------CCGSPLIRTGQ 311
>gnl|CDD|178143 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component.
Length = 416
Score = 26.2 bits (58), Expect = 6.6
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 9/38 (23%)
Query: 32 VLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLMLFRMQ 69
VLD V RF NE++S KP L++ M+
Sbjct: 388 VLDGATVARFCNEWKSYVEKP---------ELLMLHMR 416
>gnl|CDD|183082 PRK11302, PRK11302, DNA-binding transcriptional regulator HexR;
Provisional.
Length = 284
Score = 26.1 bits (58), Expect = 7.0
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 80 EKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIA 113
EKIQ LE L+ ++ VA I Q A SIA
Sbjct: 5 EKIQSRLEHLSKSERKVAEVILASPQTAIHSSIA 38
>gnl|CDD|162961 TIGR02645, ARCH_P_rylase, putative thymidine phosphorylase.
Members of this family are closely related to
characterized examples of thymidine phosphorylase (EC
2.4.2.4) and pyrimidine nucleoside phosphorylase (RC
2.4.2.2). Most examples are found in the archaea, but
other examples in Legionella pneumophila str. Paris and
Rhodopseudomonas palustris CGA009.
Length = 493
Score = 26.3 bits (58), Expect = 7.2
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 23/95 (24%)
Query: 124 LLTPDEVEYFFEFFDTI---------TTPRDKEKSYRKL-SKIWKSH------------- 160
L+ E+ +T TP + +S R + KI +
Sbjct: 52 LVEMGEIGLSVSAVETFMAREGDIVTVTPAEAPESLRAIRKKIDGAKLDQHEIASIVGDI 111
Query: 161 NNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVVMA 195
+ R +++EI AFL+ E + + MA
Sbjct: 112 VDERLSDVEISAFLTASAINGMTMDEIEALTIAMA 146
>gnl|CDD|181181 PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.
Length = 665
Score = 26.2 bits (59), Expect = 8.3
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 15/67 (22%)
Query: 86 LEFLAYGQQFVAYNIHPKTQR-AYTW------SIAPHALKVEELPLLTPDEVEYFFEFFD 138
L F AYG V P +Q A + + P+ + +EV F++
Sbjct: 219 LSFFAYGVGEVEGGELPDSQSEALEFLKAWGFPVNPYRKLCT-----SIEEVL---AFYE 270
Query: 139 TITTPRD 145
I R
Sbjct: 271 EIEEERH 277
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.321 0.137 0.431
Gapped
Lambda K H
0.267 0.0651 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,944,129
Number of extensions: 243875
Number of successful extensions: 486
Number of sequences better than 10.0: 1
Number of HSP's gapped: 485
Number of HSP's successfully gapped: 13
Length of query: 233
Length of database: 5,994,473
Length adjustment: 90
Effective length of query: 143
Effective length of database: 4,049,753
Effective search space: 579114679
Effective search space used: 579114679
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.1 bits)