RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781190|ref|YP_003065603.1| hypothetical protein CLIBASIA_05485 [Candidatus Liberibacter asiaticus str. psy62] (233 letters) >d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 146 Score = 26.7 bits (58), Expect = 1.5 Identities = 13/96 (13%), Positives = 29/96 (30%) Query: 125 LTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNG 184 LT +++ F E F + S +L+ + +S + + Sbjct: 4 LTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQI 63 Query: 185 SHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTY 220 E++ ++ E E + + K G Sbjct: 64 EFSEFLALMSRQLKSNDSEQELLEAFKVFDKNGDGL 99 >d1m4ua_ g.17.1.7 (A:) Noggin {Human (Homo sapiens) [TaxId: 9606]} Length = 206 Score = 26.9 bits (59), Expect = 1.6 Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 1/72 (1%) Query: 138 DTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHD-EWIPVVMAI 196 D I P++K+ + L + H + + G G+ D + ++ Sbjct: 25 DPIFDPKEKDLNETLLRSLLGGHYDPGFMATSPPEDRPGGGGGAAGGAEDLAELDQLLRQ 84 Query: 197 HYETRGSAEGKE 208 +E K Sbjct: 85 RPSGAMPSEIKG 96 >d1s6ia_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]} Length = 182 Score = 26.2 bits (56), Expect = 2.4 Identities = 11/77 (14%), Positives = 27/77 (35%) Query: 125 LTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNG 184 L+ +E+ E F I T ++ +L K + + + ++ Sbjct: 4 LSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTI 63 Query: 185 SHDEWIPVVMAIHYETR 201 + E+I + ++ R Sbjct: 64 DYGEFIAATVHLNKLER 80 >d1ra6a_ e.8.1.4 (A:) Viral RNA polymerase {Poliovirus type 1, strain Mahoney [TaxId: 12080]} Length = 461 Score = 25.3 bits (55), Expect = 4.1 Identities = 16/83 (19%), Positives = 25/83 (30%), Gaps = 7/83 (8%) Query: 151 RKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIV 210 R +K+ R IE + G+ GSA G + Sbjct: 163 RSKTKV--EQGKSR--LIEASSLNDSVAMRMAFGNLYAAF---HKNPGVITGSAVGCDPD 215 Query: 211 REWCKLGRTYDEKSFNAKWDSFD 233 W K+ +EK F + +D Sbjct: 216 LFWSKIPVLMEEKLFAFDYTGYD 238 >d1xffa_ d.153.1.1 (A:) Glucosamine 6-phosphate synthase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 238 Score = 25.6 bits (55), Expect = 4.4 Identities = 10/53 (18%), Positives = 17/53 (32%) Query: 150 YRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRG 202 I HN + +R L G F + + E I ++ + G Sbjct: 87 PHVSEHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGG 139 >d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]} Length = 86 Score = 25.3 bits (55), Expect = 4.4 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 2/59 (3%) Query: 147 EKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAE 205 EK++ + S+++ + T E+R +G+ I ETR AE Sbjct: 2 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEV--FIHKDKGFGFIRLETRTLAE 58 >d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 175 Score = 24.9 bits (53), Expect = 6.7 Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 2/31 (6%) Query: 102 PKTQRAYTWSIAPHALKVEELPL--LTPDEV 130 P+T +A L++EE+ + P +V Sbjct: 3 PQTMKAAVVHAYGAPLRIEEVKVPLPGPGQV 33 >d1igra1 c.10.2.5 (A:1-149) Type 1 insulin-like growth factor receptor extracellular domain {Human (Homo sapiens) [TaxId: 9606]} Length = 149 Score = 24.4 bits (53), Expect = 8.0 Identities = 6/30 (20%), Positives = 13/30 (43%) Query: 71 TNLKKQKSEEKIQGHLEFLAYGQQFVAYNI 100 LK+ ++ I+G+L L + + Sbjct: 14 QQLKRLENCTVIEGYLHILLISKAEDYRSY 43 >d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 243 Score = 24.4 bits (52), Expect = 8.7 Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 15/94 (15%) Query: 67 RMQETNLKKQKSEEKIQGHLEFLA--YGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPL 124 E K K+ + G+++F+ + + + I H V+ L Sbjct: 131 LHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAI-------------MHDCVVKLLKN 177 Query: 125 LTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWK 158 + +E TI D EK+ ++ + + Sbjct: 178 HDEESLECLCRLLTTIGKDLDFEKAKPRMDQYFN 211 >d1rroa_ a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 108 Score = 24.1 bits (52), Expect = 9.9 Identities = 8/57 (14%), Positives = 19/57 (33%) Query: 133 FFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEW 189 +FF T + + + + + + E++ FL F + + E Sbjct: 26 PQKFFQTSGLSKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESET 82 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.321 0.137 0.431 Gapped Lambda K H 0.267 0.0584 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 953,693 Number of extensions: 44834 Number of successful extensions: 114 Number of sequences better than 10.0: 1 Number of HSP's gapped: 114 Number of HSP's successfully gapped: 21 Length of query: 233 Length of database: 2,407,596 Length adjustment: 82 Effective length of query: 151 Effective length of database: 1,281,736 Effective search space: 193542136 Effective search space used: 193542136 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 51 (23.7 bits)