RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781190|ref|YP_003065603.1| hypothetical protein
CLIBASIA_05485 [Candidatus Liberibacter asiaticus str. psy62]
         (233 letters)



>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 146

 Score = 26.7 bits (58), Expect = 1.5
 Identities = 13/96 (13%), Positives = 29/96 (30%)

Query: 125 LTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNG 184
           LT +++  F E F       +   S  +L+ + +S                   +  +  
Sbjct: 4   LTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQI 63

Query: 185 SHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTY 220
              E++ ++           E  E  + + K G   
Sbjct: 64  EFSEFLALMSRQLKSNDSEQELLEAFKVFDKNGDGL 99


>d1m4ua_ g.17.1.7 (A:) Noggin {Human (Homo sapiens) [TaxId: 9606]}
          Length = 206

 Score = 26.9 bits (59), Expect = 1.6
 Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 1/72 (1%)

Query: 138 DTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHD-EWIPVVMAI 196
           D I  P++K+ +   L  +   H +  +            G     G+ D   +  ++  
Sbjct: 25  DPIFDPKEKDLNETLLRSLLGGHYDPGFMATSPPEDRPGGGGGAAGGAEDLAELDQLLRQ 84

Query: 197 HYETRGSAEGKE 208
                  +E K 
Sbjct: 85  RPSGAMPSEIKG 96


>d1s6ia_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD
           {Soybean (Glycine max) [TaxId: 3847]}
          Length = 182

 Score = 26.2 bits (56), Expect = 2.4
 Identities = 11/77 (14%), Positives = 27/77 (35%)

Query: 125 LTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNG 184
           L+ +E+    E F  I T      ++ +L    K   +    +       +   ++    
Sbjct: 4   LSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTI 63

Query: 185 SHDEWIPVVMAIHYETR 201
            + E+I   + ++   R
Sbjct: 64  DYGEFIAATVHLNKLER 80


>d1ra6a_ e.8.1.4 (A:) Viral RNA polymerase {Poliovirus type 1,
           strain Mahoney [TaxId: 12080]}
          Length = 461

 Score = 25.3 bits (55), Expect = 4.1
 Identities = 16/83 (19%), Positives = 25/83 (30%), Gaps = 7/83 (8%)

Query: 151 RKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIV 210
           R  +K+       R   IE  +           G+                GSA G +  
Sbjct: 163 RSKTKV--EQGKSR--LIEASSLNDSVAMRMAFGNLYAAF---HKNPGVITGSAVGCDPD 215

Query: 211 REWCKLGRTYDEKSFNAKWDSFD 233
             W K+    +EK F   +  +D
Sbjct: 216 LFWSKIPVLMEEKLFAFDYTGYD 238


>d1xffa_ d.153.1.1 (A:) Glucosamine 6-phosphate synthase, N-terminal
           domain {Escherichia coli [TaxId: 562]}
          Length = 238

 Score = 25.6 bits (55), Expect = 4.4
 Identities = 10/53 (18%), Positives = 17/53 (32%)

Query: 150 YRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRG 202
                 I   HN     +  +R  L   G  F + +  E I  ++    +  G
Sbjct: 87  PHVSEHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGG 139


>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
           octamer-binding protein, NonO {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 86

 Score = 25.3 bits (55), Expect = 4.4
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 147 EKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAE 205
           EK++ + S+++  +     T  E+R     +G+                I  ETR  AE
Sbjct: 2   EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEV--FIHKDKGFGFIRLETRTLAE 58


>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 175

 Score = 24.9 bits (53), Expect = 6.7
 Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 2/31 (6%)

Query: 102 PKTQRAYTWSIAPHALKVEELPL--LTPDEV 130
           P+T +A         L++EE+ +    P +V
Sbjct: 3   PQTMKAAVVHAYGAPLRIEEVKVPLPGPGQV 33


>d1igra1 c.10.2.5 (A:1-149) Type 1 insulin-like growth factor
           receptor extracellular domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 149

 Score = 24.4 bits (53), Expect = 8.0
 Identities = 6/30 (20%), Positives = 13/30 (43%)

Query: 71  TNLKKQKSEEKIQGHLEFLAYGQQFVAYNI 100
             LK+ ++   I+G+L  L   +     + 
Sbjct: 14  QQLKRLENCTVIEGYLHILLISKAEDYRSY 43


>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 243

 Score = 24.4 bits (52), Expect = 8.7
 Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 15/94 (15%)

Query: 67  RMQETNLKKQKSEEKIQGHLEFLA--YGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPL 124
              E    K K+  +  G+++F+   +  + +   I              H   V+ L  
Sbjct: 131 LHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAI-------------MHDCVVKLLKN 177

Query: 125 LTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWK 158
              + +E       TI    D EK+  ++ + + 
Sbjct: 178 HDEESLECLCRLLTTIGKDLDFEKAKPRMDQYFN 211


>d1rroa_ a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 108

 Score = 24.1 bits (52), Expect = 9.9
 Identities = 8/57 (14%), Positives = 19/57 (33%)

Query: 133 FFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNGSHDEW 189
             +FF T    +      + + +   +  +      E++ FL  F  +    +  E 
Sbjct: 26  PQKFFQTSGLSKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESET 82


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0584    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 953,693
Number of extensions: 44834
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 21
Length of query: 233
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 151
Effective length of database: 1,281,736
Effective search space: 193542136
Effective search space used: 193542136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.7 bits)