BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781190|ref|YP_003065603.1| hypothetical protein
CLIBASIA_05485 [Candidatus Liberibacter asiaticus str. psy62]
         (233 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781190|ref|YP_003065603.1| hypothetical protein CLIBASIA_05485 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 233

 Score =  493 bits (1268), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 233/233 (100%), Positives = 233/233 (100%)

Query: 1   MVATDVDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAP 60
           MVATDVDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAP
Sbjct: 1   MVATDVDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAP 60

Query: 61  KTLMLFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVE 120
           KTLMLFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVE
Sbjct: 61  KTLMLFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVE 120

Query: 121 ELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEE 180
           ELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEE
Sbjct: 121 ELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEE 180

Query: 181 FYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233
           FYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD
Sbjct: 181 FYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233


>gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 789

 Score =  292 bits (748), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 132/233 (56%), Positives = 169/233 (72%)

Query: 1   MVATDVDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAP 60
           + +  +D     GFG +CG+G  P+YAFD+D  DE+  + F + F+   G PI R+GQ P
Sbjct: 41  LSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKP 100

Query: 61  KTLMLFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVE 120
           K L+ FRM +  +KK+K+ E  QGHL+ L  GQ FVAYNIHPKT++ YTW+  PH  KVE
Sbjct: 101 KILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVE 160

Query: 121 ELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEE 180
           + PLL+ ++VEY F+FF  IT P  K+K     SK W ++NNR+YTN EI AFLSCFGEE
Sbjct: 161 DTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEE 220

Query: 181 FYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233
           FYNGSHDEWIPVVMA+H+ETRGS++GKEI R W K G TYDE++FN KWD+FD
Sbjct: 221 FYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFD 273


>gi|254780455|ref|YP_003064868.1| nicotinate phosphoribosyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 418

 Score = 23.5 bits (49), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 12/54 (22%), Positives = 21/54 (38%)

Query: 162 NRRYTNIEIRAFLSCFGEEFYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCK 215
           NR Y +  +      FG +F+      W+       +++    EG E +  W K
Sbjct: 261 NRLYDDNLLIVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWK 314


>gi|254780215|ref|YP_003064628.1| hypothetical protein CLIBASIA_00500 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 262

 Score = 23.5 bits (49), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 7/13 (53%), Positives = 9/13 (69%)

Query: 15 GILCGIGTHPVYA 27
           I C +GTHP +A
Sbjct: 56 SIFCSVGTHPCHA 68


>gi|254780836|ref|YP_003065249.1| putative type I restriction-modification system DNA methylase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 674

 Score = 21.9 bits (45), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 166 TNIEIRAFLSCFGEEFYNGS 185
           +NI++ +F+   G  FYN S
Sbjct: 65  SNIDLESFVKVAGYSFYNTS 84


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.137    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 160,978
Number of Sequences: 1233
Number of extensions: 6605
Number of successful extensions: 16
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 7
length of query: 233
length of database: 328,796
effective HSP length: 71
effective length of query: 162
effective length of database: 241,253
effective search space: 39082986
effective search space used: 39082986
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 37 (18.9 bits)