Query gi|254781191|ref|YP_003065604.1| hypothetical protein CLIBASIA_05490 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 165
No_of_seqs 108 out of 117
Neff 5.2
Searched_HMMs 13730
Date Wed Jun 1 11:40:03 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781191.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ru0a_ d.74.1.1 (A:) DcoH-lik 53.1 6.5 0.00047 17.7 3.5 44 30-95 2-48 (100)
2 d1a6bb_ g.40.1.1 (B:) Zinc fin 32.9 6.3 0.00046 17.8 0.8 14 1-14 8-21 (40)
3 d1dcpa_ d.74.1.1 (A:) Pterin-4 18.7 27 0.0019 13.7 4.3 26 70-95 18-46 (99)
4 d1lqsl_ a.26.1.3 (L:) Interleu 18.7 27 0.002 13.7 3.5 15 38-52 121-135 (142)
5 d1r5sa_ f.50.1.1 (A:) Gap junc 18.4 21 0.0015 14.4 1.3 17 65-81 29-45 (132)
6 d2hfqa1 d.375.1.1 (A:1-85) Hyp 12.6 27 0.002 13.7 0.6 12 88-99 65-76 (85)
7 d2odgc1 a.140.1.1 (C:2-47) Inn 12.0 40 0.0029 12.6 2.2 16 29-44 2-17 (46)
8 d2nn6g3 d.51.1.1 (G:195-274) R 11.7 19 0.0014 14.7 -0.4 50 66-119 27-76 (80)
9 d1wjpa1 g.37.1.1 (A:1-42) Zinc 8.1 40 0.0029 12.6 0.1 8 5-12 18-25 (42)
10 d3dlqi1 a.26.1.3 (I:41-179) In 7.8 57 0.0042 11.6 2.7 45 9-54 92-136 (139)
No 1
>d1ru0a_ d.74.1.1 (A:) DcoH-like protein DCoH2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=53.12 E-value=6.5 Score=17.67 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=28.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCC-CCCCC--CCHHHHHHHHH
Q ss_conf 16689889999999859999999999999999998898688614415877-88711--79899999999
Q gi|254781191|r 30 MQILSNRQLSQVMNVLPLIETWMKGVKEEALNVLSSGEDLPNYELKEGRK-GSRTY--NNDNQVEQLLM 95 (165)
Q Consensus 30 ~~~Lt~eei~~il~~~~~l~~W~~~v~~~A~~~~~~G~~~pG~KlVeGRs-~~R~~--~de~~a~~~l~ 95 (165)
.+.||.+|+...|..++. +||+++.|+. -.|.| .|=..+...+.
T Consensus 2 a~~Lt~~ei~~~L~~L~~----------------------~gW~~~~~~~~L~r~f~f~~f~~a~~F~~ 48 (100)
T d1ru0a_ 2 AQWLTAEERDQLIPGLKA----------------------AGWSELSERDAIYKEFSFKNFNQAFGFMS 48 (100)
T ss_dssp CSBCCHHHHHHHHHHHHH----------------------TTCEECSSSSCEEEEEECSSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHCCC----------------------CCCEEECCCCEEEEEEEECCHHHHHHHHH
T ss_conf 663999999998845887----------------------89899779985999999599999999999
No 2
>d1a6bb_ g.40.1.1 (B:) Zinc finger protein ncp10 {Moloney murine leukemia virus, MoMLV [TaxId: 11801]}
Probab=32.94 E-value=6.3 Score=17.75 Aligned_cols=14 Identities=29% Similarity=1.006 Sum_probs=10.9
Q ss_pred CCCCCCEECCCCCC
Q ss_conf 97643606346674
Q gi|254781191|r 1 MDENACRFCRAKPR 14 (165)
Q Consensus 1 ~~~d~CrFCkak~~ 14 (165)
++-|+|-|||-++-
T Consensus 8 L~kDQCAyCke~GH 21 (40)
T d1a6bb_ 8 LDRDQCAYCKEKGH 21 (40)
T ss_dssp CCSSSCSSSCCTTC
T ss_pred CCCHHHHHHHHCCC
T ss_conf 66016377753470
No 3
>d1dcpa_ d.74.1.1 (A:) Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=18.71 E-value=27 Score=13.74 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=15.8
Q ss_pred CCCEEECCCC-CCCCC--CCHHHHHHHHH
Q ss_conf 8614415877-88711--79899999999
Q gi|254781191|r 70 PNYELKEGRK-GSRTY--NNDNQVEQLLM 95 (165)
Q Consensus 70 pG~KlVeGRs-~~R~~--~de~~a~~~l~ 95 (165)
+||++++|+. -.|.| .|-..+...+.
T Consensus 18 ~GW~~~~~~~~L~r~f~F~~f~~a~~Fv~ 46 (99)
T d1dcpa_ 18 VGWNELEGRDAIFKQFHFKDFNRAFGFMT 46 (99)
T ss_dssp HTCEECTTSSCEEEEEECSSHHHHHHHHH
T ss_pred CCCEEECCCCEEEEEEEECCHHHHHHHHH
T ss_conf 89899769875999999699999999999
No 4
>d1lqsl_ a.26.1.3 (L:) Interleukin-10 (cytokine synthesis inhibitory factor, CSIF) {Human herpesvirus 5 [TaxId: 10359]}
Probab=18.68 E-value=27 Score=13.74 Aligned_cols=15 Identities=7% Similarity=0.049 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999859999999
Q gi|254781191|r 38 LSQVMNVLPLIETWM 52 (165)
Q Consensus 38 i~~il~~~~~l~~W~ 52 (165)
+-..++..|.|-+|+
T Consensus 121 ~~KAiGElDILl~wi 135 (142)
T d1lqsl_ 121 TRKGLSELDTLFSRL 135 (142)
T ss_dssp HHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999998999999999
No 5
>d1r5sa_ f.50.1.1 (A:) Gap junction alpha-1 protein, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=18.41 E-value=21 Score=14.44 Aligned_cols=17 Identities=29% Similarity=0.517 Sum_probs=12.1
Q ss_pred CCCCCCCCEEECCCCCC
Q ss_conf 89868861441587788
Q gi|254781191|r 65 SGEDLPNYELKEGRKGS 81 (165)
Q Consensus 65 ~G~~~pG~KlVeGRs~~ 81 (165)
+-..-||||||.|-.++
T Consensus 29 spmsppgykl~t~~r~~ 45 (132)
T d1r5sa_ 29 SPMSPPGYKLVTGDRNN 45 (132)
T ss_dssp SCCCCCCCCSCTTCCSS
T ss_pred CCCCCCCCEEEECCCCC
T ss_conf 87899871321035576
No 6
>d2hfqa1 d.375.1.1 (A:1-85) Hypothetical protein NE1680 {Nitrosomonas europaea [TaxId: 915]}
Probab=12.64 E-value=27 Score=13.73 Aligned_cols=12 Identities=8% Similarity=0.016 Sum_probs=5.3
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999999997167
Q gi|254781191|r 88 NQVEQLLMRELG 99 (165)
Q Consensus 88 ~~a~~~l~~~g~ 99 (165)
..|+....+.||
T Consensus 65 ~~V~~~I~~~Gy 76 (85)
T d2hfqa1 65 DEVIEAIKQNGY 76 (85)
T ss_dssp HHHHHHHHHHSE
T ss_pred HHHHHHHHHCCE
T ss_conf 899999985986
No 7
>d2odgc1 a.140.1.1 (C:2-47) Inner nuclear membrane protein emerin {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.95 E-value=40 Score=12.61 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=11.2
Q ss_pred CCCCCCHHHHHHHHHH
Q ss_conf 2166898899999998
Q gi|254781191|r 29 HMQILSNRQLSQVMNV 44 (165)
Q Consensus 29 ~~~~Lt~eei~~il~~ 44 (165)
++..|||+||..+|.+
T Consensus 2 ~y~~lSd~El~~lL~~ 17 (46)
T d2odgc1 2 NYADLSDTELTTLLRR 17 (46)
T ss_dssp GGGGSCHHHHHHHHHH
T ss_pred CHHHHCHHHHHHHHHH
T ss_conf 2656068999999999
No 8
>d2nn6g3 d.51.1.1 (G:195-274) Ribosomal RNA-processing protein 40, RRP40 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.67 E-value=19 Score=14.71 Aligned_cols=50 Identities=18% Similarity=0.299 Sum_probs=30.9
Q ss_pred CCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCH
Q ss_conf 986886144158778871179899999999716743101256899999998652
Q gi|254781191|r 66 GEDLPNYELKEGRKGSRTYNNDNQVEQLLMRELGDEAYNRTLLSPTETEQLVKR 119 (165)
Q Consensus 66 G~~~pG~KlVeGRs~~R~~~de~~a~~~l~~~g~~~~y~~klls~t~~EKllgk 119 (165)
|+.+| |.+.-|+ +-|.|.+...+..++.-. .-+..-.-+++.|..+++.+
T Consensus 27 gk~~~-FEIavG~-NGrVWvk~~~~~~ti~i~--~aI~~~e~~~~~q~~~lv~~ 76 (80)
T d2nn6g3 27 GKLYP-LEIVFGM-NGRIWVKAKTIQQTLILA--NILEACEHMTSDQRKQIFSR 76 (80)
T ss_dssp TCSSS-CCCEEET-TTEEEECCSSHHHHHHHH--HHHHHTTSSCTTTHHHHHHH
T ss_pred HHHCC-EEEEEEC-CCEEEEECCCHHHHHHHH--HHHHHHHCCCHHHHHHHHHH
T ss_conf 50287-6899835-876898289889999999--99998565999999999998
No 9
>d1wjpa1 g.37.1.1 (A:1-42) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.06 E-value=40 Score=12.62 Aligned_cols=8 Identities=63% Similarity=1.472 Sum_probs=0.0
Q ss_pred CCEECCCC
Q ss_conf 36063466
Q gi|254781191|r 5 ACRFCRAK 12 (165)
Q Consensus 5 ~CrFCkak 12 (165)
+||.|-||
T Consensus 18 ~crlcnak 25 (42)
T d1wjpa1 18 QCRLCNAK 25 (42)
T ss_dssp BCTTTCCB
T ss_pred EEEEHHHH
T ss_conf 11112126
No 10
>d3dlqi1 a.26.1.3 (I:41-179) Interleukin-22 (IL-22) {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.81 E-value=57 Score=11.63 Aligned_cols=45 Identities=9% Similarity=0.167 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3466748899999999863021668988999999985999999999
Q gi|254781191|r 9 CRAKPRCGALAVKALSTFSEHMQILSNRQLSQVMNVLPLIETWMKG 54 (165)
Q Consensus 9 Ckak~~CrArA~~~l~~~~~~~~~Lt~eei~~il~~~~~l~~W~~~ 54 (165)
|+.-..| ..+..+.+.+...|.-|...-+-..++..|.|-+|+++
T Consensus 92 C~~~~~c-e~~~~~v~~i~~~~~kL~e~g~~KAiGElDiLl~~iE~ 136 (139)
T d3dlqi1 92 CHIEGDD-LHIQRNVQKLKDTVKKLGESGEIKAIGELDLLFMSLRN 136 (139)
T ss_dssp ---------CHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHH
T ss_pred CCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5014672-52689999999999988861679999889999999998
Done!