BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781191|ref|YP_003065604.1| hypothetical protein
CLIBASIA_05490 [Candidatus Liberibacter asiaticus str. psy62]
         (165 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781191|ref|YP_003065604.1| hypothetical protein CLIBASIA_05490 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 165

 Score =  343 bits (879), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 165/165 (100%), Positives = 165/165 (100%)

Query: 1   MDENACRFCRAKPRCGALAVKALSTFSEHMQILSNRQLSQVMNVLPLIETWMKGVKEEAL 60
           MDENACRFCRAKPRCGALAVKALSTFSEHMQILSNRQLSQVMNVLPLIETWMKGVKEEAL
Sbjct: 1   MDENACRFCRAKPRCGALAVKALSTFSEHMQILSNRQLSQVMNVLPLIETWMKGVKEEAL 60

Query: 61  NVLSSGEDLPNYELKEGRKGSRTYNNDNQVEQLLMRELGDEAYNRTLLSPTETEQLVKRK 120
           NVLSSGEDLPNYELKEGRKGSRTYNNDNQVEQLLMRELGDEAYNRTLLSPTETEQLVKRK
Sbjct: 61  NVLSSGEDLPNYELKEGRKGSRTYNNDNQVEQLLMRELGDEAYNRTLLSPTETEQLVKRK 120

Query: 121 KVSETTWEQLQKFITRKDGKQVIVPCDLPVNHLKANISEFSVLKD 165
           KVSETTWEQLQKFITRKDGKQVIVPCDLPVNHLKANISEFSVLKD
Sbjct: 121 KVSETTWEQLQKFITRKDGKQVIVPCDLPVNHLKANISEFSVLKD 165


>gi|254780124|ref|YP_003064537.1| hypothetical protein CLIBASIA_00015 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 388

 Score =  136 bits (343), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 68/165 (41%), Positives = 110/165 (66%), Gaps = 2/165 (1%)

Query: 1   MDENACRFCRAKPRCGALAVKALSTFSEHMQILSNRQLSQVMNVLPLIETWMKGVKEEAL 60
           +++++CRFCRAK RC AL+   L   ++     +  +LS+  + + LI++++K  ++E  
Sbjct: 223 VNDDSCRFCRAKVRCPALSRHVLLEATKDPSTNTTVELSKAYSSISLIKSYVKACEDEMF 282

Query: 61  NVLSSGEDLPNYELKEGRKGSRTYNNDNQVEQLLMRELGDEAYNRTLLSPTETEQLVKRK 120
             L++G+++  Y+L EGRKG+R++ + N+ ++LL   LG+EA+ R L +P E EQL K +
Sbjct: 283 KRLNAGDEIQGYQLVEGRKGNRSFKDINRAQELLTSVLGEEAFKRILKTPKELEQLYKEQ 342

Query: 121 KVSETTWEQLQKFITRKDGKQVIVPCDLPVNH--LKANISEFSVL 163
           KVS+  WE+LQ+ ITR DGK VI P D+P N    K+ +SEF VL
Sbjct: 343 KVSDEFWEELQELITRGDGKPVIAPRDIPTNKQTQKSQLSEFEVL 387


>gi|254781103|ref|YP_003065516.1| penicillin-binding transmembrane protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 598

 Score = 23.1 bits (48), Expect = 2.6,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 22/34 (64%)

Query: 110 PTETEQLVKRKKVSETTWEQLQKFITRKDGKQVI 143
           P    ++++RK  SET ++ L++ ++ +  K+++
Sbjct: 158 PNLDSEMIRRKLSSETKFQWLRRKLSPQQQKRIL 191


>gi|254780202|ref|YP_003064615.1| hypothetical protein CLIBASIA_00435 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 211

 Score = 22.3 bits (46), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 10/21 (47%), Positives = 12/21 (57%)

Query: 49 ETWMKGVKEEALNVLSSGEDL 69
          E W+ G KE    VL+ GE L
Sbjct: 76 EQWITGEKEGRYCVLTGGEPL 96


>gi|254780413|ref|YP_003064826.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 820

 Score = 21.9 bits (45), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 39  SQVMNVLPLIETWMKGVKEEALNVLSSG 66
           +   N +P I   ++ VK+ ALN+LS+ 
Sbjct: 688 TSFANNIPRILADLRSVKQIALNILSNA 715


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.315    0.130    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,140
Number of Sequences: 1233
Number of extensions: 3523
Number of successful extensions: 11
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 6
length of query: 165
length of database: 328,796
effective HSP length: 68
effective length of query: 97
effective length of database: 244,952
effective search space: 23760344
effective search space used: 23760344
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)