RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781192|ref|YP_003065605.1| hypothetical protein
CLIBASIA_05495 [Candidatus Liberibacter asiaticus str. psy62]
(198 letters)
>gnl|CDD|151438 pfam10991, DUF2815, Protein of unknown function (DUF2815). This is
a phage related family of proteins with unknown
function.
Length = 181
Score = 120 bits (303), Expect = 2e-28
Identities = 67/181 (37%), Positives = 98/181 (54%), Gaps = 11/181 (6%)
Query: 9 RLSYPQLHEPRAYGDKGDE-VYSADILFSKTDNEQCDKLEQAIREAGEEKFGGSNMSALI 67
RLSY L EP++ + E YSA + K+D E ++ AI+ A EE +G
Sbjct: 9 RLSYANLFEPKSIENGQGEPKYSASFIIPKSDTETIKAIKAAIKAAAEEGWGKKAD---G 65
Query: 68 ERMKRTGRYPLKDGDQKISTSLKPEAYEVYAGQYYITPKNKKVRPRLVDRHVQEVTENIQ 127
+++ T + PL+DGD + +P E YAG Y+I +K RP +VDR+V+ + +
Sbjct: 66 KKIPATLKTPLRDGDLE-----RPFDDEAYAGHYFINASSKT-RPLIVDRNVRPLALDEG 119
Query: 128 EVFYSGCHVNAIISVYAYTFQGTKGVTFTLTGVQFVKDDTRWGGQLRASSSDFESYEEET 187
EV YSGC+ NA I+ YAY G KG+ L VQFV+D GG A+ DF++ +E
Sbjct: 120 EV-YSGCYANASINFYAYNNNGNKGIAAGLNNVQFVRDGEPLGGGRVAAEDDFDALADED 178
Query: 188 A 188
Sbjct: 179 E 179
>gnl|CDD|138835 PRK12279, PRK12279, 50S ribosomal protein L22/unknown domain fusion
protein; Provisional.
Length = 311
Score = 32.0 bits (72), Expect = 0.12
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 111 RPRLVDRHVQEVTENIQEVFYSGCHVNAIISVYAYTFQGTKGVT--FTLTGVQFVKDDTR 168
P+ ++ +N+ +FY VN ++ V Y TK V F L V+ +
Sbjct: 196 SPKNAQVLFDDLEKNV--IFYKTTPVNKVLRVLVYVTSPTKKVVGEFDLESVEIGAISSI 253
Query: 169 W---GGQLRASSSDFESYEEET 187
W G Q S ++++Y E
Sbjct: 254 WRKYGKQSVISKKEYDAYYEGK 275
>gnl|CDD|184287 PRK13735, PRK13735, conjugal transfer mating pair stabilization
protein TraG; Provisional.
Length = 942
Score = 30.5 bits (69), Expect = 0.30
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 137 NAIISVYAYTFQGTKGVTFTLTGVQFVKDDTRWGGQLRASSSDFESYEEETASI 190
+A++ Y F VT++ TG+ F G L A S+DF S E A++
Sbjct: 110 HAMVQSYEMIFAQPDSVTYSKTGMLF-------GANLVAKSTDFLSQNPEIANL 156
>gnl|CDD|183662 PRK12662, PRK12662, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 492
Score = 30.1 bits (68), Expect = 0.36
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 133 GCHVNAIISVYAYTFQGTKGVTFTLTGVQFV 163
G A+++ + Y GT G TF L G+ F+
Sbjct: 153 GRDKKALVAAFEYLIIGTIGATFYLIGIGFL 183
>gnl|CDD|179875 PRK04758, PRK04758, hypothetical protein; Validated.
Length = 181
Score = 29.8 bits (67), Expect = 0.48
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 174 RASSSDFESYEEETASIDELEE 195
+ASS DF++ EE+ ++ E+EE
Sbjct: 136 QASSDDFDAAEEDDTALAEIEE 157
>gnl|CDD|162931 TIGR02578, cas_TM1811_Csm1, CRISPR-associated protein, Csm1 family.
The family is designated Csm2, for CRISPR/Cas Subtype
Mtube Protein 2. A typical example is TM1811 from
Thermotoga maritima. CRISPR are Clustered Regularly
Interspaced Short Palindromic Repeats. This protein
family belongs to a conserved gene cluster regularly
found near CRISPR repeats.
Length = 648
Score = 27.8 bits (62), Expect = 2.0
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 23 DKGDEVYSADILFSKTDNEQCDKLEQAIREAGEEKFGGSNMSALIE 68
D G Y +L T+ + +KL + I E ++F G ++ I
Sbjct: 303 DGGGHFY---LLLPNTEEARLEKLRERIEEELLKEFRGEMLTLGIA 345
>gnl|CDD|150856 pfam10250, O-FucT, GDP-fucose protein O-fucosyltransferase. This
is a family of conserved proteins representing the
enzyme responsible for adding O-fucose to EGF (epidermal
growth factor-like) repeats. Six highly conserved
cysteines are present in O-FucT-1 as well as a DXD-like
motif (ERD), conserved in mammals, Drosophila, and C.
elegans. Both features are characteristic of several
glycosyltransferase families. The enzyme is a
membrane-bound protein released by proteolysis and, as
for most glycosyltransferases, is strongly activated by
manganese.
Length = 331
Score = 27.6 bits (62), Expect = 2.3
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 95 EVYAGQYYITPKNKKVRPRLVDRHVQEVTENIQEVFYSGCHVNAI---ISVYAYTFQGTK 151
E+Y G+ + P K P LV + E + F + A+ I +++ F GT
Sbjct: 246 EIYGGERELAPL-KAEFPNLVTKESLASKEELAP-FKGHSGLAALDYIICLHSDVFIGTY 303
Query: 152 GVTFT 156
G TF+
Sbjct: 304 GSTFS 308
>gnl|CDD|179669 PRK03902, PRK03902, manganese transport transcriptional regulator;
Provisional.
Length = 142
Score = 27.3 bits (61), Expect = 2.5
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 94 YEVYAGQYYITPKNKKVRPRLVDRH 118
YE Y G +TPK KK+ RLV RH
Sbjct: 54 YEKYRG-LVLTPKGKKIGKRLVYRH 77
>gnl|CDD|173039 PRK14575, PRK14575, putative peptidase; Provisional.
Length = 406
Score = 27.4 bits (60), Expect = 2.7
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 108 KKVRPRLVDRHVQEVTE--NIQEVFYSGC----HVNAIISVYAYTFQGT 150
KK V R ++ + E NI V + C HV I+S + YTF+ T
Sbjct: 5 KKEHLNTVSRKLRTIMERDNIDAVIVTTCDNFYHVTGILSFFMYTFRNT 53
>gnl|CDD|152286 pfam11850, DUF3370, Protein of unknown function (DUF3370). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria. Proteins in this
family are typically between 452 to 532 amino acids in
length.
Length = 439
Score = 27.2 bits (61), Expect = 2.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 4 VLIKGRLSYPQLHEPRAYGDKGDEVYS 30
+L GRL+ P+ + P G +G +YS
Sbjct: 229 LLDSGRLAPPRDYLPTPPGIQGGIIYS 255
>gnl|CDD|178334 PLN02733, PLN02733, phosphatidylcholine-sterol O-acyltransferase.
Length = 440
Score = 27.3 bits (61), Expect = 2.8
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
Query: 135 HVNAIISVYAYTFQGTKG-VTFT-LTGVQFVK 164
+VN+ I++ A FQG G +T + LTGV FV+
Sbjct: 190 YVNSWIAI-AAPFQGAPGFITDSLLTGVSFVE 220
>gnl|CDD|182566 PRK10580, proY, putative proline-specific permease; Provisional.
Length = 457
Score = 26.3 bits (58), Expect = 5.5
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 129 VFYSGCHVNAIISVYAYTFQGTKGVTFTLT 158
VFY G + I+S+Y + GT G F LT
Sbjct: 245 VFYVGT-LFVIMSIYPWNQVGTNGSPFVLT 273
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase
inhibitor.
Length = 587
Score = 26.0 bits (57), Expect = 7.4
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 31 ADILFSKTDNEQCDKLEQAIREAGEEKFGGSNMSALIERMKRTGRYP---LKDGDQKIS 86
ADI+ SK N + +AI++A E S+ +I + GRY LK G +K +
Sbjct: 272 ADIIVSKDGNGTFKTISEAIKKAPEH----SSRRTII--YVKAGRYEENNLKVGRKKTN 324
>gnl|CDD|185041 PRK15083, PRK15083, PTS system mannitol-specific transporter
subunit IICBA; Provisional.
Length = 639
Score = 25.8 bits (57), Expect = 7.5
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 40 NEQCDKLEQAIREAGEE--KFG---GSNMSALIERMKRTGRY 76
+ E+AIR AGE+ K G + A+++R K T Y
Sbjct: 505 GLKAATKEEAIRFAGEQLVKGGYVEPEYVDAMLDREKLTSTY 546
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.314 0.133 0.378
Gapped
Lambda K H
0.267 0.0731 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,207,055
Number of extensions: 193365
Number of successful extensions: 353
Number of sequences better than 10.0: 1
Number of HSP's gapped: 348
Number of HSP's successfully gapped: 21
Length of query: 198
Length of database: 5,994,473
Length adjustment: 88
Effective length of query: 110
Effective length of database: 4,092,969
Effective search space: 450226590
Effective search space used: 450226590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.0 bits)