RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254781192|ref|YP_003065605.1| hypothetical protein
CLIBASIA_05495 [Candidatus Liberibacter asiaticus str. psy62]
(198 letters)
>d1je5a_ b.40.4.7 (A:) gp2.5 {Bacteriophage T7 [TaxId: 10760]}
Length = 197
Score = 81.6 bits (201), Expect = 4e-17
Identities = 30/203 (14%), Positives = 57/203 (28%), Gaps = 24/203 (11%)
Query: 1 MAKVLIKG----RLSYPQLHEP-----RAYGDKGDEVYSADILFSKTDNE------QCDK 45
MAK + Y + +P VY D+ D + K
Sbjct: 1 MAKKIFTSALGTAEPYAYIAKPDYGNEERGFGNPRGVYKVDLTIPNKDPRCQRMVDEIVK 60
Query: 46 LEQAIREAGEEKFGGSNMSALIERMKRTGRYPLKDGDQKISTSLKPEAYEVYAGQYYITP 105
+ A E++ + + + + + + Q T
Sbjct: 61 CHEEAYAAAVEEYEANPPAVARGKKPLKPYEGDMPFFDNGDGTTTFKFKCYASFQDKKTK 120
Query: 106 KNKKVRPRLVDRHVQEVTENIQEVFYSGCHVNAIISVYAYTFQGTK--GVTFTLTGVQFV 163
+ K + +VD +++ + + G + S+ Y + V L V V
Sbjct: 121 ETKHINLVVVDSKGKKMED--VPIIGGGSKLKVKYSLVPYKWNTAVGASVKLQLESVMLV 178
Query: 164 KDDTRWGGQLRASSSDFESYEEE 186
+ T GG D+ EE
Sbjct: 179 ELATFGGG-----EDDWADEVEE 196
>d2b3ya2 c.83.1.1 (A:2-630) Iron-responsive element binding protein
1, N-terminal domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 629
Score = 27.0 bits (59), Expect = 1.1
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 6 IKGRLSYPQLHEPRAYGDKGDEVYSADI 33
I G + EP KG +V+ DI
Sbjct: 561 IAGTIRIDFEKEPLGVNAKGQQVFLKDI 588
>d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein
{Escherichia coli [TaxId: 562]}
Length = 153
Score = 26.7 bits (58), Expect = 1.5
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 47 EQAIREAGEEKFGGSNMSA--LIERMKRTGRY 76
EQA+ E E G +A + ++ RY
Sbjct: 117 EQALLEVIAEFGGMDTEAADEFLSELRVERRY 148
>d1isia_ c.23.14.3 (A:) Bone marror stromal cell antigen 1,
BST-1/CD157 (ADP ribosyl cyclase-2) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 250
Score = 26.7 bits (59), Expect = 1.6
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 109 KVRPRLVDRHVQEVTENI---QEVFYSGCHVNAIISVYAYTFQGTKGVTFTLTGVQFVKD 165
V P D + +I + +F+ + +++ +A + ++ L G V D
Sbjct: 51 SVLPSDYDLFITLSRHSIPRDKSLFWEN--SHLLVNSFADNTRRFMPLSDVLYG--RVAD 106
Query: 166 DTRWGGQLRASSSDFESY 183
W Q S D++S
Sbjct: 107 FLSWCRQKADSGLDYQSC 124
>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin
reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 160
Score = 26.4 bits (57), Expect = 1.8
Identities = 2/31 (6%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 46 LEQAIREAGEEKFGGSNMSALIERMKRTGRY 76
++ + + G + ++K+ ++
Sbjct: 127 IDDIMVSLAAAE--GIDWIEYKRQLKKAEQW 155
>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin
reductase) {Maize (Zea mays), root isoform [TaxId:
4577]}
Length = 154
Score = 26.0 bits (56), Expect = 2.2
Identities = 3/30 (10%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 47 EQAIREAGEEKFGGSNMSALIERMKRTGRY 76
+ +++ E + G + + ++K+ ++
Sbjct: 122 QDTLKKVAERR--GESWDQKLAQLKKNKQW 149
>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin
reductase) {Cyanobacterium (Anabaena sp.), pcc 7119
[TaxId: 1167]}
Length = 162
Score = 25.3 bits (54), Expect = 3.8
Identities = 7/33 (21%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 44 DKLEQAIREAGEEKFGGSNMSALIERMKRTGRY 76
+ ++ A+ A ++ G S + +K+ GR+
Sbjct: 127 EGIDAALSAAAAKE--GVTWSDYQKDLKKAGRW 157
>d2ef1a1 c.23.14.3 (A:45-291) ADP ribosyl cyclase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 247
Score = 25.1 bits (55), Expect = 3.9
Identities = 11/76 (14%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Query: 110 VRPRLVDRHVQEVTENI---QEVFYSGCHVNAIISVYAYTFQGTKGVTFTLTGVQFVKDD 166
+ ++ T+ + + + +S + + + + + TL G ++ DD
Sbjct: 57 ITEEDYQPLMKLGTQTVPCNKILLWSR--IKDLAHQFTQVQRDMFTLEDTLLG--YLADD 112
Query: 167 TRWGGQLRASSSDFES 182
W G+ S +++S
Sbjct: 113 LTWCGEFNTSKINYQS 128
>d1jb0b_ f.29.1.1 (B:) Apoprotein a2, PsaB {Synechococcus elongatus
[TaxId: 32046]}
Length = 739
Score = 24.8 bits (54), Expect = 4.6
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 167 TRWGGQLRASSSDFESYE---EETAS 189
TR A + DFES++ EE
Sbjct: 17 TRRIWYAIAMAHDFESHDGMTEENLY 42
>d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase
FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 165
Score = 24.7 bits (53), Expect = 5.0
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 47 EQAIREAGEEKFGGSNMSA--LIERMKRTGRY 76
+AI+ ++ S A I R++ RY
Sbjct: 127 LKAIQRIMTQQGKLSEEDAGVFISRLRDDNRY 158
>d1jb0a_ f.29.1.1 (A:) Apoprotein a1, PsaA {Synechococcus elongatus
[TaxId: 32046]}
Length = 743
Score = 24.8 bits (54), Expect = 5.9
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 167 TRWGGQLRASSSDFESYEEETASI 190
T W L A + DF+++ + I
Sbjct: 33 TTWIWNLHALAHDFDTHTSDLEDI 56
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.133 0.378
Gapped
Lambda K H
0.267 0.0646 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 727,641
Number of extensions: 32297
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 17
Length of query: 198
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 117
Effective length of database: 1,295,466
Effective search space: 151569522
Effective search space used: 151569522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.2 bits)