BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781192|ref|YP_003065605.1| hypothetical protein
CLIBASIA_05495 [Candidatus Liberibacter asiaticus str. psy62]
         (198 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781192|ref|YP_003065605.1| hypothetical protein CLIBASIA_05495 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 198

 Score =  412 bits (1060), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 198/198 (100%), Positives = 198/198 (100%)

Query: 1   MAKVLIKGRLSYPQLHEPRAYGDKGDEVYSADILFSKTDNEQCDKLEQAIREAGEEKFGG 60
           MAKVLIKGRLSYPQLHEPRAYGDKGDEVYSADILFSKTDNEQCDKLEQAIREAGEEKFGG
Sbjct: 1   MAKVLIKGRLSYPQLHEPRAYGDKGDEVYSADILFSKTDNEQCDKLEQAIREAGEEKFGG 60

Query: 61  SNMSALIERMKRTGRYPLKDGDQKISTSLKPEAYEVYAGQYYITPKNKKVRPRLVDRHVQ 120
           SNMSALIERMKRTGRYPLKDGDQKISTSLKPEAYEVYAGQYYITPKNKKVRPRLVDRHVQ
Sbjct: 61  SNMSALIERMKRTGRYPLKDGDQKISTSLKPEAYEVYAGQYYITPKNKKVRPRLVDRHVQ 120

Query: 121 EVTENIQEVFYSGCHVNAIISVYAYTFQGTKGVTFTLTGVQFVKDDTRWGGQLRASSSDF 180
           EVTENIQEVFYSGCHVNAIISVYAYTFQGTKGVTFTLTGVQFVKDDTRWGGQLRASSSDF
Sbjct: 121 EVTENIQEVFYSGCHVNAIISVYAYTFQGTKGVTFTLTGVQFVKDDTRWGGQLRASSSDF 180

Query: 181 ESYEEETASIDELEEMPF 198
           ESYEEETASIDELEEMPF
Sbjct: 181 ESYEEETASIDELEEMPF 198


>gi|254780126|ref|YP_003064539.1| hypothetical protein CLIBASIA_00025 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 216

 Score =  134 bits (337), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 84/197 (42%), Positives = 113/197 (57%), Gaps = 9/197 (4%)

Query: 1   MAKVLIKGRLSYPQLH-EPRAYGDKGDEV--YSADILFSKTDNEQCDKLEQAIREAGEEK 57
           M K+ +KGRLSYP L  + R     G  V  Y  DI+F K D +Q + +E  ++ A  E 
Sbjct: 1   MQKLTVKGRLSYPALDTKVRMKLPDGSSVEHYGCDIVFPKADTKQINAVEACLKTAVTEI 60

Query: 58  FGGSNMSALIE--RMKRTGRYPLKDGDQKISTSLKPEAY-EVYAGQYYITPKNKKVRPRL 114
           F   +  A +   R K   R  L+DGD KI++S KPE Y + Y    YI+ KNK V+P L
Sbjct: 61  FPNVSPDAFLSAVRSKSESRGVLRDGDAKIASSHKPENYTQTYTDSVYISAKNKYVQPLL 120

Query: 115 VDRHVQEVTENIQEVFYSGCHVNAIISVYAYTFQG--TKGVTFTLTGVQFVKDDTRWGGQ 172
           VDR  Q V++  +EVFY GC V A +++ AY      TKG + TLTGVQF K D RWG  
Sbjct: 121 VDRQAQPVSDP-REVFYPGCWVIAKLNIGAYELDPYKTKGFSCTLTGVQFFKHDERWGAS 179

Query: 173 LRASSSDFESYEEETAS 189
            ++ +S+F+ Y EE  S
Sbjct: 180 PKSDTSEFKDYGEEQDS 196


>gi|254780190|ref|YP_003064603.1| fumarate hydratase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 463

 Score = 22.7 bits (47), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 159 GVQFVKDDTRWGGQLRASSSDFESYEEE 186
           G   V++D  WG Q + S  +F+  EE+
Sbjct: 12  GTMKVQEDRYWGAQAQRSLENFKIGEEK 39


>gi|254780991|ref|YP_003065404.1| excinuclease ABC subunit B [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 805

 Score = 22.3 bits (46), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 5/31 (16%)

Query: 76  YPLKDGDQKISTSLKPEAYEVYAGQYYITPK 106
           YPL    QKI      E  ++YA  +Y+TP+
Sbjct: 364 YPL--TGQKIRNV---ETIKIYANSHYVTPR 389


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.314    0.133    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,453
Number of Sequences: 1233
Number of extensions: 4845
Number of successful extensions: 16
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 4
length of query: 198
length of database: 328,796
effective HSP length: 70
effective length of query: 128
effective length of database: 242,486
effective search space: 31038208
effective search space used: 31038208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 36 (18.5 bits)