HHsearch alignment for GI: 254781193 and conserved domain: COG0417
>COG0417 PolB DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair].
Probab=97.70 E-value=0.002 Score=40.58 Aligned_cols=178 Identities=18% Similarity=0.140 Sum_probs=90.6
Q ss_pred CCEEEEEECCCCCCCCCCCCCHHHCCCCEEEEEEEEECCEEE-------------EEEECCCCHHHHHHHHHHH--CCCC
Q ss_conf 968999814178987000440011279819999999848039-------------9997888104379999986--3889
Q gi|254781193|r 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV-------------ELWDCVHDPVMPQVLKEAL--ENTD 65 (675)
Q Consensus 1 mk~i~lD~ET~~~~dl~~~Gl~~y~~~~~i~~i~~a~~~~~v-------------~~~d~~~~~~~~~~l~~~L--~~~~ 65 (675)
T Consensus 154 l~~la~DiE~~~~~~~-----~~~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~e~e~l~~~~~~i~~~dPd 228 (792)
T COG0417 154 LRVLAFDIETLSEPGK-----FPDGEKDPIIMISYAIEAEGGLIEVFIYTSGEGFSVEVVISEAELLERFVELIREYDPD 228 (792)
T ss_pred CCEEEEEEEECCCCCC-----CCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCC
T ss_conf 7547995031057778-----89877786269999704677764443223567763487258799999999998502989
Q ss_pred CEEEEEEH-HHHHHHHHHH---CCCCCCC------------------CCE-EEHHHHHH--HH-CCCCCHHHHHHHCCCC
Q ss_conf 81999730-7749999986---0899884------------------203-31688999--86-7899968989982998
Q gi|254781193|r 66 VTIVAHNS-YFERTVLKAC---FNLDIPI------------------HRW-ICTLVLAR--SN-GLPSALKAVGEALKLS 119 (675)
Q Consensus 66 ~~kV~HNa-~FD~~~L~~~---~Gi~i~~------------------~~~-~DTmi~A~--~l-~~~~sL~~la~~l~l~ 119 (675)
T Consensus 229 VI-vgyn~~~fd~pyl~~Ra~~lgi~~~~gr~~~~~~~~~~~~~~~~Gr~~iDl~~~~~~~~~~~~~ysl~~v~~~~l~~ 307 (792)
T COG0417 229 VI-VGYNGDNFDWPYLAERAERLGIPLRLGRDGSELRVRKSGFSSQVGRLHIDLYPALRRRPLNLKSYSLEAVSEALLGE 307 (792)
T ss_pred EE-EEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCEEEEEHHHHHHHCCCCCCCEEHHHHHHHHCCC
T ss_conf 99-98367777738999999981998511356653200212544557716741066542032355632434677664133
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHCCCCC
Q ss_conf 11004379999862021123433234678585328999999899899999999630104000151336666531156213
Q gi|254781193|r 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199 (675)
Q Consensus 120 ~~k~~~~k~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~Ya~~Dv~~t~~L~~~l~~~~~~E~~~~~~~~~me~~Gi~v 199 (675)
T Consensus 308 ~k~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~-------~~~e~s~vsg~~~ 367 (792)
T COG0417 308 GKREDIPY-------------DSMEEIWPDWADSKLRLLLYNLSDADLVLRILLKNELLP-------LLIELSRVSGLPL 367 (792)
T ss_pred CCHHCCCC-------------CHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHH-------HHHHHHHHHCCCH
T ss_conf 52200562-------------013330423551076888834107889999986666789-------9999999849879
Q ss_pred CHHHH
Q ss_conf 79999
Q gi|254781193|r 200 DVALA 204 (675)
Q Consensus 200 D~e~l 204 (675)
T Consensus 368 ~~~~~ 372 (792)
T COG0417 368 DDVTR 372 (792)
T ss_pred HHHHH
T ss_conf 99861