HHsearch alignment for GI: 254781193 and conserved domain: COG0749
>COG0749 PolA DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=809.46 Aligned_cols=536 Identities=22% Similarity=0.258 Sum_probs=451.4
Q ss_pred EEEEECCCCCCCCCCCCCHHHCCCCEEEEEEEEECCEEEEEEECCCCH---HHHHHHHHHHCCCCCEEEEEEHHHHHHHH
Q ss_conf 999814178987000440011279819999999848039999788810---43799999863889819997307749999
Q gi|254781193|r 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---VMPQVLKEALENTDVTIVAHNSYFERTVL 80 (675)
Q Consensus 4 i~lD~ET~~~~dl~~~Gl~~y~~~~~i~~i~~a~~~~~v~~~d~~~~~---~~~~~l~~~L~~~~~~kV~HNa~FD~~~L 80 (675)
T Consensus 25 ~a~~~et~~l--------~~--~~~~lvg~s~~~~~-~~~yi~~~~~~~~~~~~~~l~~~l~~~~~~kv~~~~K~d~~~l 93 (593)
T COG0749 25 IAFDTETDGL--------DP--HGADLVGLSVASEE-EAAYIPLLHGPEQLNVLAALKPLLEDEGIKKVGQNLKYDYKVL 93 (593)
T ss_pred CCEECCCCCC--------CC--CCCCEEEEEEECCC-CCEEEEECCCHHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHH
T ss_conf 1010001456--------75--55874678862365-4236751366555514899999863754103213413669999
Q ss_pred HHHCCCCCCCCCEEEHHHHHHHHCCC---CCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 98608998842033168899986789---996898998299811004379999862021123433234678585328999
Q gi|254781193|r 81 KACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157 (675)
Q Consensus 81 ~~~~Gi~i~~~~~~DTmi~A~~l~~~---~sL~~la~~l~l~~~k~~~~k~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 157 (675)
T Consensus 94 ~~~-Gi~--~~~~~DtmlasYll~~~~~~~~~~~l~~r~-l~~-~~~~~~~i~~---k-------g~~~~~~~~~~~~~~ 158 (593)
T COG0749 94 ANL-GIE--PGVAFDTMLASYLLNPGAGAHNLDDLAKRY-LGL-ETITFEDIAG---K-------GKKQLTFADVKLEKA 158 (593)
T ss_pred HHC-CCC--CCCHHHHHHHHHCCCCCCCCCCHHHHHHHH-CCC-CCCHHHHHHC---C-------CCCCCCCCCCHHHHH
T ss_conf 973-976--565178999996148676757778999982-587-7402487632---5-------445676100147788
Q ss_pred HHHHHHHHHHHHHHHHHCCCCH-----------HCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998998999999996301040-----------00151336666531156213799999999999999999999999872
Q gi|254781193|r 158 GEYCKGDVTVTREIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226 (675)
Q Consensus 158 ~~Ya~~Dv~~t~~L~~~l~~~~-----------~~E~~~~~~~~~me~~Gi~vD~e~l~~l~~~~~~~~~~l~~~i~~~~ 226 (675)
T Consensus 159 ~~y~a~~a~~~~~L~~~l~~~l~~~~~L~~l~~~iE~Pl~~VLa~ME~~Gi~vD~~~L~~l~~el~~~l~~le~eiy~l- 237 (593)
T COG0749 159 TEYAAEDADATLRLESILEPELLKTPVLLELYEEIEMPLVRVLARMERNGIKVDVQYLKELSKELGCELAELEEEIYEL- 237 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf 8878888899999999999876310469999999754089999986862856429999999999999999999999998-
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCC-CCCC----CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 8854767887999887777558888-8898----8533899872130482389999999997655101335788740868
Q gi|254781193|r 227 YGLVSSSRCLEKLKTWLFLETGLHL-EDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301 (675)
Q Consensus 227 ~~~~~n~~S~~ql~~~L~~~lg~~~-~~~~----k~t~~~~L~~~~~~~~~~~~~l~~r~~~~k~~~~~~~~~~~~~~~d 301 (675)
T Consensus 238 aG~~FNi~SPKQL~~ILfeKl~Lp~~~kKtktG~yST~~~vLe~L~~~h~i~~~iL~~Rq-l~KLksTY~d~L~~~i~~~ 316 (593)
T COG0749 238 AGEEFNINSPKQLGEILFEKLGLPPGLKKTKTGNYSTDAEVLEKLADDHPLPKLILEYRQ-LAKLKSTYTDGLPKLINPD 316 (593)
T ss_pred HCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHH-HHHHHHHHHHCCHHHHCCC
T ss_conf 268578997789999988851898555545789976279999986524873899999987-8888777640228751888
Q ss_pred -CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHEEEECCCCCEEEEEE
Q ss_conf -9676778840001322112478884448888865113455431012333345544321003333012668987899983
Q gi|254781193|r 302 -GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380 (675)
Q Consensus 302 -gRih~~~~~~gat~TGR~S~~~pNlQnlPr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~~f~a~~G~~lv~aD 380 (675)
T Consensus 317 t~RIHTsf~Q~~-t~TGRLSSsdPNLQNIPiRse~Gr~-------------------------IR~aFva~~g~~~i~aD 370 (593)
T COG0749 317 TGRIHTSFNQTG-TATGRLSSSDPNLQNIPIRSEEGRK-------------------------IRKAFVAEKGYTLISAD 370 (593)
T ss_pred CCCCCCCHHHHH-HHHHCCCCCCCCCCCCCCCCHHHHH-------------------------HHHCEECCCCCEEEEEC
T ss_conf 993276168777-7750335799975567767776786-------------------------66405579998688701
Q ss_pred CCCCCHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHCCCCHHHHCCHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCC
Q ss_conf 45372333323114620113454113310101476448795670620111016520210028888889987987088831
Q gi|254781193|r 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460 (675)
Q Consensus 381 ySqiElRvlA~ls~d~~l~~af~~g~D~h~~tA~~~~g~~~~~~~~~~R~~aK~~~~g~~YG~G~~~l~~~~~~~G~~~~ 460 (675)
T Consensus 371 YSQIELRilAHls~D~~Ll~AF~~g~DiH~~TA~~vFgv~~~~Vt~e~Rr~AKaINFGiiYG~safgLa~---------- 440 (593)
T COG0749 371 YSQIELRILAHLSQDEGLLRAFTEGEDIHTATAAEVFGVPIEEVTSEQRRKAKAINFGLIYGMSAFGLAQ---------- 440 (593)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCHHHHHHHHHHCCCEEECCCHHHHHH----------
T ss_conf 5799999999861889999988658637789999994998233899987565530354143451334798----------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf 13455655545555678888999988764310001022078889999999987887899999999999999754917962
Q gi|254781193|r 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540 (675)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~~~~~~r~~~p~i~~~~~~~~~~~~~~~~~~~~~~~ 540 (675)
T Consensus 441 ----------------------------------~L~I~~~eA~~~I~~YF~rypgv~~ym~~~~~~ar---~~G----- 478 (593)
T COG0749 441 ----------------------------------QLGIPRKEAKEYIDRYFERYPGVKEYMERTKEEAR---EDG----- 478 (593)
T ss_pred ----------------------------------HCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH---HCC-----
T ss_conf ----------------------------------74988688899999999868689999999999999---749-----
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 15421133222344564023247663101678662102101002345677753145655453688999999999999967
Q gi|254781193|r 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620 (675)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~p~GR~~~~~~~~~~~~~~~~~~~~~~r~~~~~~k~~n~~iQgtaadi~k~ami~l~~~ 620 (675)
T Consensus 479 ------------------yV~Tl~gRRry~p~i~s~n~~~R~---~aER~------AiNaPIQGTAADiiK~AMI~vd~~ 531 (593)
T COG0749 479 ------------------YVETLFGRRRYLPDINSSNRVVRA---AAERA------AINAPIQGTAADIIKLAMIKVDKA 531 (593)
T ss_pred ------------------CEEECCCCCCCCCCCCCCCHHHHH---HHHHH------HHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf ------------------354102660248621017788887---88898------835767444899999999867999
Q ss_pred ------CCCEEEEECCEEEEECCCCHHHHH-HHHHHHHCCCCHHCCCCCCEEEECCCCCCC
Q ss_conf ------981889952589997792489999-999998456520215995157401004631
Q gi|254781193|r 621 ------GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674 (675)
Q Consensus 621 ------g~~ivl~VHDEiv~evp~~~~~~~-~~i~~~M~~~~~w~~~~pl~ae~~~~~~y~ 674 (675)
T Consensus 532 l~~~~~~~rllLQVHDELvfEv~~~e~e~~~~~v~~~Me~a~~--L~VPL~vdv~~g~nW~ 590 (593)
T COG0749 532 LKEEKLKARLLLQVHDELVFEVPKEELEEVKKLLKAIMENAVN--LSVPLEVDVGIGKNWD 590 (593)
T ss_pred HHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC--CCCCEEEECCCCCCHH
T ss_conf 8634321456775545564117686899999999999987650--4786698617776834