HHsearch alignment for GI: 254781193 and conserved domain: COG0847
>COG0847 DnaQ DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair].
Probab=98.29 E-value=2.2e-05 Score=53.31 Aligned_cols=89 Identities=26% Similarity=0.310 Sum_probs=61.2
Q ss_pred HHHHHHHCCCCCEEEEEEHHHHHHHHHHH---CCCCCCCCCEEEHHHHHHHHCC---CCCHHHHHHHCCCCCCHHHHHHH
Q ss_conf 99999863889819997307749999986---0899884203316889998678---99968989982998110043799
Q gi|254781193|r 55 QVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKE 128 (675)
Q Consensus 55 ~~l~~~L~~~~~~kV~HNa~FD~~~L~~~---~Gi~i~~~~~~DTmi~A~~l~~---~~sL~~la~~l~l~~~k~~~~k~ 128 (675)
T Consensus 86 ~~~~~~i~~~-~~~Vahna~fD~~fl~~~~~~~~~~~~~~~~~~t~~~~r~~~~~~~~~~L~~l~~~~gi~~~~~----- 159 (243)
T COG0847 86 PEFLDFIGGL-RLLVAHNAAFDVGFLRVESERLGIEIPGDPVLDTLALARRHFPGFDRSSLDALAERLGIDRNPF----- 159 (243)
T ss_pred HHHHHHHCCC-CEEEEEEHHHCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCC-----
T ss_conf 9999984788-8699950530889999899970898757642007999998769976134899999629887777-----
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9986202112343323467858532899999989989999999963010
Q gi|254781193|r 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 (675)
Q Consensus 129 l~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~Ya~~Dv~~t~~L~~~l~~ 177 (675)
T Consensus 160 ---------------------~~-------H~Al~Da~~~a~~~~~~~~ 180 (243)
T COG0847 160 ---------------------HP-------HRALFDALALAELFLLLQT 180 (243)
T ss_pred ---------------------CC-------CCHHHHHHHHHHHHHHHHH
T ss_conf ---------------------76-------6167889999999999862