HHsearch alignment for GI: 254781193 and conserved domain: COG0847

>COG0847 DnaQ DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair].
Probab=98.29  E-value=2.2e-05  Score=53.31  Aligned_cols=89  Identities=26%  Similarity=0.310  Sum_probs=61.2

Q ss_pred             HHHHHHHCCCCCEEEEEEHHHHHHHHHHH---CCCCCCCCCEEEHHHHHHHHCC---CCCHHHHHHHCCCCCCHHHHHHH
Q ss_conf             99999863889819997307749999986---0899884203316889998678---99968989982998110043799
Q gi|254781193|r   55 QVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKE  128 (675)
Q Consensus        55 ~~l~~~L~~~~~~kV~HNa~FD~~~L~~~---~Gi~i~~~~~~DTmi~A~~l~~---~~sL~~la~~l~l~~~k~~~~k~  128 (675)
T Consensus        86 ~~~~~~i~~~-~~~Vahna~fD~~fl~~~~~~~~~~~~~~~~~~t~~~~r~~~~~~~~~~L~~l~~~~gi~~~~~-----  159 (243)
T COG0847          86 PEFLDFIGGL-RLLVAHNAAFDVGFLRVESERLGIEIPGDPVLDTLALARRHFPGFDRSSLDALAERLGIDRNPF-----  159 (243)
T ss_pred             HHHHHHHCCC-CEEEEEEHHHCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCC-----
T ss_conf             9999984788-8699950530889999899970898757642007999998769976134899999629887777-----


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             9986202112343323467858532899999989989999999963010
Q gi|254781193|r  129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP  177 (675)
Q Consensus       129 l~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~Ya~~Dv~~t~~L~~~l~~  177 (675)
T Consensus       160 ---------------------~~-------H~Al~Da~~~a~~~~~~~~  180 (243)
T COG0847         160 ---------------------HP-------HRALFDALALAELFLLLQT  180 (243)
T ss_pred             ---------------------CC-------CCHHHHHHHHHHHHHHHHH
T ss_conf             ---------------------76-------6167889999999999862