HHsearch alignment for GI: 254781193 and conserved domain: PHA00452
>PHA00452 T3/T7-like RNA polymerase.
Probab=96.30 E-value=0.081 Score=30.19 Aligned_cols=230 Identities=14% Similarity=0.085 Sum_probs=134.8
Q ss_pred CEEEEEECCCCCHHHHHHHCCCCCHHHHHH-----HCCCCHHHHHHHHCCCCHHHH-----------------CCHHHHH
Q ss_conf 789998345372333323114620113454-----113310101476448795670-----------------6201110
Q gi|254781193|r 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFE-----TGEDLYVTTYARSFNVAPAQV-----------------TKDQRAI 431 (675)
Q Consensus 374 ~~lv~aDySqiElRvlA~ls~d~~l~~af~-----~g~D~h~~tA~~~~g~~~~~~-----------------~~~~R~~ 431 (675)
T Consensus 504 ~lpv~~DgsCnGlQH~aal~rD~~ga~~VNL~p~d~p~DvY~~Va~~v~~~~~~d~~~~~~~~~~~~~~~~l~~~i~Rk~ 583 (816)
T PHA00452 504 GLPVAMDGTCSGLQHFSAMLRDEVGGAAVNLLPSDKPQDIYKIVAEKVNERLERDAINGTDNETRGLAGQWLAYGITRSV 583 (816)
T ss_pred CCCCCCCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHH
T ss_conf 77411078872999999972586321452367888865189999999999999887438763268999998861666766
Q ss_pred CCCCEEEEECCCCHHHHHHHHHH----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 16520210028888889987987----08883113455655545555678888999988764310001022078889999
Q gi|254781193|r 432 GKVMELALGYQGGAKAFQKMAST----TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507 (675)
Q Consensus 432 aK~~~~g~~YG~G~~~l~~~~~~----~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~~~ 507 (675)
T Consensus 584 vK~~vMT~~Yg~t~~g~~~qi~~~l~~~~~~~~~~~~-----------------------------~~~~~~~yla~~i~ 634 (816)
T PHA00452 584 TKRPVMTLPYGSTRFGFRDQVREDLVQPAIDEGKGAM-----------------------------FTNQAAGYMAKLIW 634 (816)
T ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCHH-----------------------------HHHHHHHHHHHHHH
T ss_conf 3253167520661000899999999730556674303-----------------------------47899999999999
Q ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCEEECC-CCCC-CCCCCCCCCHHHHCCHHH
Q ss_conf 99998788789999999999999975491796215421133222344564023247-6631-016786621021010023
Q gi|254781193|r 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP-SGRS-LVYRDVGNNRSYLNTTTR 585 (675)
Q Consensus 508 ~~~r~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~GR~-~~~~~~~~~~~~~~~~~~ 585 (675)
T Consensus 635 ~ai~~~~~~a~~im~wl~~~a~~~~~~~~~v~W~TP~G~pV~Q~Y~~~~~~~v~t~l~g~~~~~~~~~~~------~~~~ 708 (816)
T PHA00452 635 DAISETVPAAVEAMNWLQQAAKLLAKEVKDLHWTTPTGFPVWQEYRKTETKRVRLRLMGSARIQLTVNTD------EIDA 708 (816)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEEECCCCCCEEEEEEECCEEEEEECCCCC------CCCH
T ss_conf 9999997709999999999999997169972898999998987737888468998741527998337889------8897
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEECCCCHHHHHH
Q ss_conf 456777531456554536889999999999999679818899525899977924899999
Q gi|254781193|r 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645 (675)
Q Consensus 586 ~~~r~~~~~~k~~n~~iQgtaadi~k~ami~l~~~g~~ivl~VHDEiv~evp~~~~~~~~ 645 (675)
T Consensus 709 ~kq~~a-----~~PNfIHSlDashm~~t~~~~~~~gi~~fa~VHDs--f~tha~dv~~m~ 761 (816)
T PHA00452 709 RKHASG-----IAPNFVHSLDASHLRLTVVACAEKGIESFAVIHDS--FGTHAADADNLF 761 (816)
T ss_pred HHHHCC-----CCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC--CCCCCCCHHHHH
T ss_conf 787243-----79488888999999999999998399627886327--887715899999