HHsearch alignment for GI: 254781193 and conserved domain: PRK05601

>PRK05601 DNA polymerase III subunit epsilon; Validated.
Probab=97.02  E-value=0.0026  Score=39.86  Aligned_cols=66  Identities=18%  Similarity=0.194  Sum_probs=42.6

Q ss_pred             HHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHCC-----------------------------CCC-CCCCEEEHHHHHHH
Q ss_conf             379999986388981999730774999998608-----------------------------998-84203316889998
Q gi|254781193|r   53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFN-----------------------------LDI-PIHRWICTLVLARS  102 (675)
Q Consensus        53 ~~~~l~~~L~~~~~~kV~HNa~FD~~~L~~~~G-----------------------------i~i-~~~~~~DTmi~A~~  102 (675)
T Consensus       115 ia~~l~~lLd--GRtLVaHNa~fdw~Fia~Ea~RA~~~a~~~~R~~~r~~~~~~r~rrrqr~gh~P~P~~iv~TLAlaRR  192 (377)
T PRK05601        115 ILKSLDRLID--GRTLLLHNAPRTWGFIVSEAKRAMNDAARANRNRNRGNRRGGRGRRRQRVGHIPKPLVIVDTLASARR  192 (377)
T ss_pred             HHHHHHHHHC--CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCEEEHHHHHHH
T ss_conf             9999999845--86799835602088999999986554234432100134444443101003677887521007777764


Q ss_pred             HCCC---CCHHHHHHHCCCCC
Q ss_conf             6789---99689899829981
Q gi|254781193|r  103 NGLP---SALKAVGEALKLSS  120 (675)
Q Consensus       103 l~~~---~sL~~la~~l~l~~  120 (675)
T Consensus       193 ~~l~~~d~RL~~vA~~~g~~a  213 (377)
T PRK05601        193 QAIALDDVRIRGVAHTLGLDA  213 (377)
T ss_pred             CCCCCCCHHHHHHHHHCCCCC
T ss_conf             189987435566676608886