HHsearch alignment for GI: 254781193 and conserved domain: PRK05601
>PRK05601 DNA polymerase III subunit epsilon; Validated.
Probab=97.02 E-value=0.0026 Score=39.86 Aligned_cols=66 Identities=18% Similarity=0.194 Sum_probs=42.6
Q ss_pred HHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHCC-----------------------------CCC-CCCCEEEHHHHHHH
Q ss_conf 379999986388981999730774999998608-----------------------------998-84203316889998
Q gi|254781193|r 53 MPQVLKEALENTDVTIVAHNSYFERTVLKACFN-----------------------------LDI-PIHRWICTLVLARS 102 (675)
Q Consensus 53 ~~~~l~~~L~~~~~~kV~HNa~FD~~~L~~~~G-----------------------------i~i-~~~~~~DTmi~A~~ 102 (675)
T Consensus 115 ia~~l~~lLd--GRtLVaHNa~fdw~Fia~Ea~RA~~~a~~~~R~~~r~~~~~~r~rrrqr~gh~P~P~~iv~TLAlaRR 192 (377)
T PRK05601 115 ILKSLDRLID--GRTLLLHNAPRTWGFIVSEAKRAMNDAARANRNRNRGNRRGGRGRRRQRVGHIPKPLVIVDTLASARR 192 (377)
T ss_pred HHHHHHHHHC--CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCEEEHHHHHHH
T ss_conf 9999999845--86799835602088999999986554234432100134444443101003677887521007777764
Q ss_pred HCCC---CCHHHHHHHCCCCC
Q ss_conf 6789---99689899829981
Q gi|254781193|r 103 NGLP---SALKAVGEALKLSS 120 (675)
Q Consensus 103 l~~~---~sL~~la~~l~l~~ 120 (675)
T Consensus 193 ~~l~~~d~RL~~vA~~~g~~a 213 (377)
T PRK05601 193 QAIALDDVRIRGVAHTLGLDA 213 (377)
T ss_pred CCCCCCCHHHHHHHHHCCCCC
T ss_conf 189987435566676608886