HHsearch alignment for GI: 254781193 and conserved domain: PRK06309
>PRK06309 DNA polymerase III subunit epsilon; Validated.
Probab=99.18 E-value=1e-09 Score=81.35 Aligned_cols=86 Identities=23% Similarity=0.244 Sum_probs=62.2
Q ss_pred HHHHHHCCCCCEEEEEEH-HHHHHHHHHH---CCCCCCCCCEEEHHHHHHHHCC---CCCHHHHHHHCCCCCCHHHHHHH
Q ss_conf 999986388981999730-7749999986---0899884203316889998678---99968989982998110043799
Q gi|254781193|r 56 VLKEALENTDVTIVAHNS-YFERTVLKAC---FNLDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKE 128 (675)
Q Consensus 56 ~l~~~L~~~~~~kV~HNa-~FD~~~L~~~---~Gi~i~~~~~~DTmi~A~~l~~---~~sL~~la~~l~l~~~k~~~~k~ 128 (675)
T Consensus 72 ~~~~f~~-~~~ilVaHN~~~FD~~fL~~e~~r~g~~~~~~~~iDTl~lar~l~P~l~~h~L~~L~~~~gi~~~~------ 144 (232)
T PRK06309 72 KFREFCG-TDNILVAHNNDGFDFPLLVKECRRHSLEPLTLRTIDSLKWAQKYRPDLPKHNLQYLRQVYGFAENQ------ 144 (232)
T ss_pred HHHHHHC-CCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCC------
T ss_conf 9999857-998899848965679999999998599867740537999999975897768899999980999988------
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9986202112343323467858532899999989989999999963010
Q gi|254781193|r 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177 (675)
Q Consensus 129 l~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~Ya~~Dv~~t~~L~~~l~~ 177 (675)
T Consensus 145 --------------------aH---------rAl~Da~at~~vf~~ll~ 164 (232)
T PRK06309 145 --------------------AH---------RALDDVITLHRVFSALVG 164 (232)
T ss_pred --------------------CC---------CHHHHHHHHHHHHHHHHH
T ss_conf --------------------88---------859999999999999872