HHsearch alignment for GI: 254781193 and conserved domain: PRK06310

>PRK06310 DNA polymerase III subunit epsilon; Validated.
Probab=99.20  E-value=6.3e-10  Score=82.68  Aligned_cols=87  Identities=24%  Similarity=0.242  Sum_probs=61.5

Q ss_pred             HHHHHHCCCCCEEEEEEHHHHHHHHHHH---CCCCCC--CCCEEEHHHHHHHH--CCCCCHHHHHHHCCCCCCHHHHHHH
Q ss_conf             9999863889819997307749999986---089988--42033168899986--7899968989982998110043799
Q gi|254781193|r   56 VLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIP--IHRWICTLVLARSN--GLPSALKAVGEALKLSSQKMEEGKE  128 (675)
Q Consensus        56 ~l~~~L~~~~~~kV~HNa~FD~~~L~~~---~Gi~i~--~~~~~DTmi~A~~l--~~~~sL~~la~~l~l~~~k~~~~k~  128 (675)
T Consensus        80 ~~~~fi~~~~-ilVaHNa~FD~~fL~~e~~r~g~~~~~~~~~~IDTl~lAr~~~~~~~~~L~~L~~~~~i~~~~------  152 (250)
T PRK06310         80 QIKGFFKEGD-YIVGHSVGFDLQVLAQEAERIGETFLSKHYYIIDTLRLAKEYGDSPNNSLEALAVHFNVPYDG------  152 (250)
T ss_pred             HHHHHHCCCC-EEEEECHHHHHHHHHHHHHHCCCCCCCCCCCEECHHHHHHHCCCCCCCHHHHHHHHCCCCCCC------
T ss_conf             9999967999-999938455799999999976998665679578499999756765456099999970999986------


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             99862021123433234678585328999999899899999999630104
Q gi|254781193|r  129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL  178 (675)
Q Consensus       129 l~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~Ya~~Dv~~t~~L~~~l~~~  178 (675)
T Consensus       153 --------------------a---------HrAl~Da~aTa~vf~~l~~r  173 (250)
T PRK06310        153 --------------------N---------HRAMKDVEININVFKHLCKR  173 (250)
T ss_pred             --------------------C---------CCHHHHHHHHHHHHHHHHHH
T ss_conf             --------------------6---------68199999999999999985