HHsearch alignment for GI: 254781193 and conserved domain: PRK06310
>PRK06310 DNA polymerase III subunit epsilon; Validated.
Probab=99.20 E-value=6.3e-10 Score=82.68 Aligned_cols=87 Identities=24% Similarity=0.242 Sum_probs=61.5
Q ss_pred HHHHHHCCCCCEEEEEEHHHHHHHHHHH---CCCCCC--CCCEEEHHHHHHHH--CCCCCHHHHHHHCCCCCCHHHHHHH
Q ss_conf 9999863889819997307749999986---089988--42033168899986--7899968989982998110043799
Q gi|254781193|r 56 VLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIP--IHRWICTLVLARSN--GLPSALKAVGEALKLSSQKMEEGKE 128 (675)
Q Consensus 56 ~l~~~L~~~~~~kV~HNa~FD~~~L~~~---~Gi~i~--~~~~~DTmi~A~~l--~~~~sL~~la~~l~l~~~k~~~~k~ 128 (675)
T Consensus 80 ~~~~fi~~~~-ilVaHNa~FD~~fL~~e~~r~g~~~~~~~~~~IDTl~lAr~~~~~~~~~L~~L~~~~~i~~~~------ 152 (250)
T PRK06310 80 QIKGFFKEGD-YIVGHSVGFDLQVLAQEAERIGETFLSKHYYIIDTLRLAKEYGDSPNNSLEALAVHFNVPYDG------ 152 (250)
T ss_pred HHHHHHCCCC-EEEEECHHHHHHHHHHHHHHCCCCCCCCCCCEECHHHHHHHCCCCCCCHHHHHHHHCCCCCCC------
T ss_conf 9999967999-999938455799999999976998665679578499999756765456099999970999986------
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99862021123433234678585328999999899899999999630104
Q gi|254781193|r 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 (675)
Q Consensus 129 l~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~Ya~~Dv~~t~~L~~~l~~~ 178 (675)
T Consensus 153 --------------------a---------HrAl~Da~aTa~vf~~l~~r 173 (250)
T PRK06310 153 --------------------N---------HRAMKDVEININVFKHLCKR 173 (250)
T ss_pred --------------------C---------CCHHHHHHHHHHHHHHHHHH
T ss_conf --------------------6---------68199999999999999985