HHsearch alignment for GI: 254781193 and conserved domain: PRK07247
>PRK07247 DNA polymerase III subunit epsilon; Validated.
Probab=98.54 E-value=1.8e-06 Score=60.37 Aligned_cols=85 Identities=13% Similarity=0.149 Sum_probs=56.2
Q ss_pred HHHHHHHCCCCCEEEEEEH-HHHHHHHHHH---CCCCCCCCCEEEHHHHHHHHC----CCCCHHHHHHHCCCCCCHHHHH
Q ss_conf 9999986388981999730-7749999986---089988420331688999867----8999689899829981100437
Q gi|254781193|r 55 QVLKEALENTDVTIVAHNS-YFERTVLKAC---FNLDIPIHRWICTLVLARSNG----LPSALKAVGEALKLSSQKMEEG 126 (675)
Q Consensus 55 ~~l~~~L~~~~~~kV~HNa-~FD~~~L~~~---~Gi~i~~~~~~DTmi~A~~l~----~~~sL~~la~~l~l~~~k~~~~ 126 (675)
T Consensus 76 ~~f~~Fig--d~~lVaHNa~~FD~~fL~~~~~~~~~~~~-~~~~~~~~~~r~~~~p~l~n~kL~tLa~~f~I~~~----- 147 (195)
T PRK07247 76 AAFKNFVG--ELPLIGYNAQKSDLPILAENGLDLRDQYQ-VDLFDEAFDRRSSDLNGIANLKLQTVATFLGIKGR----- 147 (195)
T ss_pred HHHHHHHC--CCEEEEECCCHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCC-----
T ss_conf 99999968--99189908845149999998774157766-85699999998860588767778999997499998-----
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999862021123433234678585328999999899899999999630104
Q gi|254781193|r 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 (675)
Q Consensus 127 k~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~Ya~~Dv~~t~~L~~~l~~~ 178 (675)
T Consensus 148 ----------------------~---------HRAl~DA~aTa~If~klLe~ 168 (195)
T PRK07247 148 ----------------------G---------HNSLEDARMTARIYESFLET 168 (195)
T ss_pred ----------------------C---------CCCHHHHHHHHHHHHHHHHH
T ss_conf ----------------------9---------08189999999999999997