HHsearch alignment for GI: 254781193 and conserved domain: PRK07942
>PRK07942 DNA polymerase III subunit epsilon; Provisional.
Probab=99.08 E-value=6e-09 Score=76.31 Aligned_cols=80 Identities=19% Similarity=0.165 Sum_probs=58.8
Q ss_pred CCCEEEEEEHHHHHHHHHHH---CCCC-CCCCCEEEHHHHHHHHCC----CCCHHHHHHHCCCCCCHHHHHHHHHHHHCC
Q ss_conf 89819997307749999986---0899-884203316889998678----999689899829981100437999986202
Q gi|254781193|r 64 TDVTIVAHNSYFERTVLKAC---FNLD-IPIHRWICTLVLARSNGL----PSALKAVGEALKLSSQKMEEGKELIARFCK 135 (675)
Q Consensus 64 ~~~~kV~HNa~FD~~~L~~~---~Gi~-i~~~~~~DTmi~A~~l~~----~~sL~~la~~l~l~~~k~~~~k~l~~~~~k 135 (675)
T Consensus 92 ~g~~lVahNA~FDl~fL~~El~R~g~~~l~~~~viDtl~l~r~l~~~r~gkr~L~aL~~~ygv~l~~------------- 158 (234)
T PRK07942 92 AGVPVVVYNAPYDLTVLDRELRRHGLPSLVPGPVIDPYVIDKHVDRYRKGKRTLTALCEHYGVRLDN------------- 158 (234)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCC-------------
T ss_conf 7987999670764999999999859996777755619998877514777888899999984998877-------------
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 1123433234678585328999999899899999999630104
Q gi|254781193|r 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 (675)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~Ya~~Dv~~t~~L~~~l~~~ 178 (675)
T Consensus 159 -------------aH---------~A~aDA~Ata~l~~~l~~r 179 (234)
T PRK07942 159 -------------AH---------DATADALAAARLAWALARR 179 (234)
T ss_pred -------------CC---------CCHHHHHHHHHHHHHHHHH
T ss_conf -------------55---------6415289999999999987