HHsearch alignment for GI: 254781193 and conserved domain: TIGR01407

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative; InterPro: IPR006310 These are a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of Escherichia coli. .
Probab=98.99  E-value=1.8e-08  Score=73.19  Aligned_cols=109  Identities=23%  Similarity=0.186  Sum_probs=73.8

Q ss_pred             CEEEEEECCCCCCCCCCCCCHHHCCCCEEEEEEEEE-CCEEEE-EE--ECCCC------------------------HHH
Q ss_conf             689998141789870004400112798199999998-480399-99--78881------------------------043
Q gi|254781193|r    2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF-DDHPVE-LW--DCVHD------------------------PVM   53 (675)
Q Consensus         2 k~i~lD~ET~~~~dl~~~Gl~~y~~~~~i~~i~~a~-~~~~v~-~~--d~~~~------------------------~~~   53 (675)
T Consensus         1 rYaVVDLEtTg~~~---------~~~d~IIqiGiV~v~DgeIv~~f~T~VNP~~~~pp~I~eLTGisd~~l~~AP~F~qV   71 (944)
T TIGR01407         1 RYAVVDLETTGTDS---------SEFDKIIQIGIVLVEDGEIVDTFATDVNPNEPIPPFIQELTGISDEQLKQAPYFSQV   71 (944)
T ss_pred             CEEEEEEEECCCCC---------CCCCCEEEEEEEEEECCCEEEECCCCCCCCCCCCCHHHHHCCCCHHHHCCCCCHHHH
T ss_conf             96899874168886---------455766899889985581432012677889877611454228776864048888799


Q ss_pred             HHHHHHHHCCCCCEEEEEEHHHHHHHHHHH---CCCCCCCCCEEEHHHHHHHHCC---CCCHHHHHHHCCCCCC
Q ss_conf             799999863889819997307749999986---0899884203316889998678---9996898998299811
Q gi|254781193|r   54 PQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQ  121 (675)
Q Consensus        54 ~~~l~~~L~~~~~~kV~HNa~FD~~~L~~~---~Gi~i~~~~~~DTmi~A~~l~~---~~sL~~la~~l~l~~~  121 (675)
T Consensus        72 A~~i~~~l~D--~iFVAHNV~FD~nfL~k~l~~~G~~~~~~~~iDTVELa~if~PT~esY~Ls~L~E~LGl~h~  143 (944)
T TIGR01407        72 AQEIYDLLED--GIFVAHNVHFDLNFLAKELVDEGYEPLEVPRIDTVELARIFFPTEESYKLSELSEELGLEHE  143 (944)
T ss_pred             HHHHHHHHCC--CEEEEECHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCC
T ss_conf             9999987429--72776101506789999998568974343520056799874674435561489997198714