HHsearch alignment for GI: 254781193 and conserved domain: TIGR01407
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative; InterPro: IPR006310 These are a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of Escherichia coli. .
Probab=98.99 E-value=1.8e-08 Score=73.19 Aligned_cols=109 Identities=23% Similarity=0.186 Sum_probs=73.8
Q ss_pred CEEEEEECCCCCCCCCCCCCHHHCCCCEEEEEEEEE-CCEEEE-EE--ECCCC------------------------HHH
Q ss_conf 689998141789870004400112798199999998-480399-99--78881------------------------043
Q gi|254781193|r 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF-DDHPVE-LW--DCVHD------------------------PVM 53 (675)
Q Consensus 2 k~i~lD~ET~~~~dl~~~Gl~~y~~~~~i~~i~~a~-~~~~v~-~~--d~~~~------------------------~~~ 53 (675)
T Consensus 1 rYaVVDLEtTg~~~---------~~~d~IIqiGiV~v~DgeIv~~f~T~VNP~~~~pp~I~eLTGisd~~l~~AP~F~qV 71 (944)
T TIGR01407 1 RYAVVDLETTGTDS---------SEFDKIIQIGIVLVEDGEIVDTFATDVNPNEPIPPFIQELTGISDEQLKQAPYFSQV 71 (944)
T ss_pred CEEEEEEEECCCCC---------CCCCCEEEEEEEEEECCCEEEECCCCCCCCCCCCCHHHHHCCCCHHHHCCCCCHHHH
T ss_conf 96899874168886---------455766899889985581432012677889877611454228776864048888799
Q ss_pred HHHHHHHHCCCCCEEEEEEHHHHHHHHHHH---CCCCCCCCCEEEHHHHHHHHCC---CCCHHHHHHHCCCCCC
Q ss_conf 799999863889819997307749999986---0899884203316889998678---9996898998299811
Q gi|254781193|r 54 PQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQ 121 (675)
Q Consensus 54 ~~~l~~~L~~~~~~kV~HNa~FD~~~L~~~---~Gi~i~~~~~~DTmi~A~~l~~---~~sL~~la~~l~l~~~ 121 (675)
T Consensus 72 A~~i~~~l~D--~iFVAHNV~FD~nfL~k~l~~~G~~~~~~~~iDTVELa~if~PT~esY~Ls~L~E~LGl~h~ 143 (944)
T TIGR01407 72 AQEIYDLLED--GIFVAHNVHFDLNFLAKELVDEGYEPLEVPRIDTVELARIFFPTEESYKLSELSEELGLEHE 143 (944)
T ss_pred HHHHHHHHCC--CEEEEECHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCC
T ss_conf 9999987429--72776101506789999998568974343520056799874674435561489997198714