HHsearch alignment for GI: 254781193 and conserved domain: cd06125
>cd06125 DnaQ_like_exo The DnaQ-like exonuclease superfamily is a structurally conserved group of 3'-5' exonucleases, which catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. It is also called the DEDD superfamily, after the four invariant acidic residues present in the catalytic site of its members. The superfamily consists of DNA- and RNA-processing enzymes such as the proofreading domains of DNA polymerases, other DNA exonucleases, RNase D, RNase T, Oligoribonuclease and RNA exonucleases (REX). The DnaQ-like exonuclease domain contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, which are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The conservation patterns of the three motifs may vary among different subfamilies. DnaQ-like exonucleases are classified as DEDDy or DEDDh exonucleases depending on the variation of motif
Probab=98.75 E-value=1.2e-07 Score=67.89 Aligned_cols=89 Identities=24% Similarity=0.166 Sum_probs=57.1
Q ss_pred EEEEECCCCCCCCCCCCCHHHCCCCEEEEEEEEEC-CEEEEEEECCCCH------------------------HHHHHHH
Q ss_conf 99981417898700044001127981999999984-8039999788810------------------------4379999
Q gi|254781193|r 4 LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD-DHPVELWDCVHDP------------------------VMPQVLK 58 (675)
Q Consensus 4 i~lD~ET~~~~dl~~~Gl~~y~~~~~i~~i~~a~~-~~~v~~~d~~~~~------------------------~~~~~l~ 58 (675)
T Consensus 1 Vv~D~ETTGl--------~~~-~~d~Iiei~~v~~~~~~~~~~~v~p~~~i~~~~~~i~gi~~~~v~~~p~~~~~~~~~~ 71 (130)
T cd06125 1 VAFDIETTGL--------NGN-ARDEIIEIALVVVHIGEKFVFDVKPDDLIDPYAFTISGITDEVVERAATEAELLIELL 71 (130)
T ss_pred CEEEEECCCC--------CCC-CCCEEEEEEEEEEECCCEEEEEECCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9898018996--------999-9985899999997189889999799998997794103759999833060899999999
Q ss_pred HHHCCCCCEEEEEEHHHHHHHHHHH---CCCCCCC--CCEEEHHHHHH
Q ss_conf 9863889819997307749999986---0899884--20331688999
Q gi|254781193|r 59 EALENTDVTIVAHNSYFERTVLKAC---FNLDIPI--HRWICTLVLAR 101 (675)
Q Consensus 59 ~~L~~~~~~kV~HNa~FD~~~L~~~---~Gi~i~~--~~~~DTmi~A~ 101 (675)
T Consensus 72 ~f~~~~~~ilVgHN~~FD~~fL~~~~~r~g~~~~~~~~~~iDTl~lar 119 (130)
T cd06125 72 AFLRDKDDILVGHNISFDLPYLLNRAAELGIPYPILGRIVFDTLALAL 119 (130)
T ss_pred HHHCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHH
T ss_conf 997699999999194774999999999849999878996868609842