HHsearch alignment for GI: 254781193 and conserved domain: pfam03175
>pfam03175 DNA_pol_B_2 DNA polymerase type B, organellar and viral. Like pfam00136, members of this family are also DNA polymerase type B proteins. Those included here are found in plant and fungal mitochondria, and in viruses.
Probab=95.39 E-value=0.048 Score=31.62 Aligned_cols=114 Identities=22% Similarity=0.240 Sum_probs=56.4
Q ss_pred EEEEEEH-HHHHHHHHHHCCC----C-------------CC----CCCEEEHHHHHHHHCCCCCHHHHHHHCCCCCCHHH
Q ss_conf 1999730-7749999986089----9-------------88----42033168899986789996898998299811004
Q gi|254781193|r 67 TIVAHNS-YFERTVLKACFNL----D-------------IP----IHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124 (675)
Q Consensus 67 ~kV~HNa-~FD~~~L~~~~Gi----~-------------i~----~~~~~DTmi~A~~l~~~~sL~~la~~l~l~~~k~~ 124 (675)
T Consensus 2 ~~y~HNl~~fD~~fil~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~DS~~l-----~~~sL~~~~~~f~l~~~Kg~ 76 (452)
T pfam03175 2 IPYAHNLSKFDGTFILPNLIRKKIIDKKIWKNGIIIKIDFKYKYIKIMVRDSYLL-----LPTSLRKLAKAFNLEVQKGC 76 (452)
T ss_pred CEECCCCCCCCHHHHHHHHHHCCCCCCEECCCCCEEEEEEECCCEEEEEECCHHH-----HHHHHHHHHHHHCCCCCCCC
T ss_conf 3663576424775555446642887634714894798887526279999814554-----33649999998398665786
Q ss_pred HHHHHHHHHCCCCCCC--------------CC----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCH
Q ss_conf 3799998620211234--------------33----2346785853289999998998999999996301040001513
Q gi|254781193|r 125 EGKELIARFCKGETHE--------------CL----YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL 185 (675)
Q Consensus 125 ~~k~l~~~~~k~~~~~--------------~~----~~~~~~~~~~~~~~~~~Ya~~Dv~~t~~L~~~l~~~~~~E~~~ 185 (675)
T Consensus 77 fPy~~~~~~~~~~~~~~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yc~~DV~iL~~v~~~f~~~~~~~~~l 155 (452)
T pfam03175 77 FPYDFVNKNYMWDKGGFPIEKYWKDFKEYILNKEIWNLKNRPNGYDIRKETIEYCKNDVLVLAKLLISFKNFIYEEFNI 155 (452)
T ss_pred CCHHHHCHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 6817746566526778884554256134566777876640466676299999999999999999999999999998097