HHsearch alignment for GI: 254781193 and conserved domain: pfam04857
>pfam04857 CAF1 CAF1 family ribonuclease. The major pathways of mRNA turnover in eukaryotes initiate with shortening of the polyA tail. CAF1 encodes a critical component of the major cytoplasmic deadenylase in yeast. Both Caf1p is required for normal mRNA deadenylation in vivo and localizes to the cytoplasm. Caf1p copurifies with a Ccr4p-dependent polyA-specific exonuclease activity. Some members of this family include and inserted RNA binding domain pfam01424. This family of proteins is related to other exonucleases pfam00929 (Bateman A pers. obs.). The crystal structure of Saccharomyces cerevisiae Pop2 has been resolved at 2.3 Angstrom#resolution.
Probab=93.47 E-value=0.24 Score=27.17 Aligned_cols=59 Identities=19% Similarity=0.145 Sum_probs=42.5
Q ss_pred CCCCCEEEEEEHHHHHHHHHHHC-CCCCCC-------------CCEEEHHHHHHHHC-----CCCCHHHHHHHCCCCC
Q ss_conf 38898199973077499999860-899884-------------20331688999867-----8999689899829981
Q gi|254781193|r 62 ENTDVTIVAHNSYFERTVLKACF-NLDIPI-------------HRWICTLVLARSNG-----LPSALKAVGEALKLSS 120 (675)
Q Consensus 62 ~~~~~~kV~HNa~FD~~~L~~~~-Gi~i~~-------------~~~~DTmi~A~~l~-----~~~sL~~la~~l~l~~ 120 (675)
T Consensus 137 ~~~~~~wv~f~g~yD~~yl~k~l~g~~LP~~~~eF~~~l~~~FP~vyD~K~la~~~~~~~~~~~~gL~~lA~~L~v~r 214 (235)
T pfam04857 137 NISSVTWVTFHGLYDFGYLLKLLTGGPLPETLDDFLELLRELFPRVYDTKYLAKFCFELDGGSNGGLQELADLLGVNR 214 (235)
T ss_pred CCCCCEEEEECCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf 579987998172778999999974998999899999999997771750999998522135875578999999749978