HHsearch alignment for GI: 254781193 and conserved domain: smart00479
>smart00479 EXOIII exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases.
Probab=98.56 E-value=1.9e-06 Score=60.08 Aligned_cols=89 Identities=26% Similarity=0.273 Sum_probs=59.4
Q ss_pred HHHHHHHCCCCCEEEEEEHHHHHHHHHHH---CCCCCC-CCCEEEHHHHHHHHCC--CCCHHHHHHHCCCCCCHHHHHHH
Q ss_conf 99999863889819997307749999986---089988-4203316889998678--99968989982998110043799
Q gi|254781193|r 55 QVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIP-IHRWICTLVLARSNGL--PSALKAVGEALKLSSQKMEEGKE 128 (675)
Q Consensus 55 ~~l~~~L~~~~~~kV~HNa~FD~~~L~~~---~Gi~i~-~~~~~DTmi~A~~l~~--~~sL~~la~~l~l~~~k~~~~k~ 128 (675)
T Consensus 72 ~~~~~~l~~~-~~v~~~~~~fD~~~L~~~~~~~~~~~~~~~~~~dt~~~~~~~~~~~~~~L~~l~~~~~i~~~~------ 144 (169)
T smart00479 72 EELLEFLKGK-ILVAGNALNFDLRFLKLEHPRLGIKDPPKNPVIDTLKLARALNPGRKYSLKKLAERLGLEVIG------ 144 (169)
T ss_pred HHHHHHHCCC-CCHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCC------
T ss_conf 9999860487-451036799999999999998189988665246299999997588545899999985999899------
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99862021123433234678585328999999899899999999630104
Q gi|254781193|r 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 (675)
Q Consensus 129 l~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~Ya~~Dv~~t~~L~~~l~~~ 178 (675)
T Consensus 145 -------------------~~---------H~Al~Da~~t~~v~~~l~~~ 166 (169)
T smart00479 145 -------------------RA---------HRALDDARATAKLFKKLVER 166 (169)
T ss_pred -------------------CC---------CCHHHHHHHHHHHHHHHHHH
T ss_conf -------------------99---------29799999999999999977