HHsearch alignment for GI: 254781193 and conserved domain: smart00486
>smart00486 POLBc DNA polymerase type-B family. DNA polymerase alpha, delta, epsilon and zeta chain (eukaryota), DNA polymerases in archaea, DNA polymerase II in e. coli, mitochondrial DNA polymerases and and virus DNA polymerases
Probab=98.25 E-value=0.00024 Score=46.51 Aligned_cols=155 Identities=19% Similarity=0.169 Sum_probs=79.3
Q ss_pred CEEEEEECCCCCCCCCCCCCHHHCCCCEEEEEEEEECCEEE--------------------EEEECCCCHHHHHHHHHHH
Q ss_conf 68999814178987000440011279819999999848039--------------------9997888104379999986
Q gi|254781193|r 2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV--------------------ELWDCVHDPVMPQVLKEAL 61 (675)
Q Consensus 2 k~i~lD~ET~~~~dl~~~Gl~~y~~~~~i~~i~~a~~~~~v--------------------~~~d~~~~~~~~~~l~~~L 61 (675)
T Consensus 4 ~i~s~DIEt~~~~~~---~p~~~~~~d~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~ll~~f~~~i 80 (471)
T smart00486 4 KILSFDIETYTDGGL---FPDPLIFEDEIIQISLVINDGDKKGPEERICFTLGTCKEIDGVEVYEFNNEKELLKAFLEFI 80 (471)
T ss_pred EEEEEEEEECCCCCC---CCCCCCCCCEEEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCEEEECCCHHHHHHHHHHHH
T ss_conf 699999896679999---99988899849999999821987878877543036767789988998099999999999999
Q ss_pred --CCCCCEEEEEEH-HHHHHHHHHH---CCCCCC--------------------------------CC-CEEEHHHHHHH
Q ss_conf --388981999730-7749999986---089988--------------------------------42-03316889998
Q gi|254781193|r 62 --ENTDVTIVAHNS-YFERTVLKAC---FNLDIP--------------------------------IH-RWICTLVLARS 102 (675)
Q Consensus 62 --~~~~~~kV~HNa-~FD~~~L~~~---~Gi~i~--------------------------------~~-~~~DTmi~A~~ 102 (675)
T Consensus 81 ~~~dpd-ii~g~N~~~FD~~yi~~R~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~D~~~~~~~ 159 (471)
T smart00486 81 KKYDPD-IIYGHNISNFDLPYIISRLEKLKIKPLSFIGRLKNIIDIKRKKPLFGSKSFGKTIKVKIKGRLVIDLYNLYKN 159 (471)
T ss_pred HHCCCC-EEEECCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCEECCCCCCCCCCCEEEEEEEEEEEEEHHHHHHH
T ss_conf 871999-9996588787689999999984896477637357787643203321012566314899855999788999988
Q ss_pred -H-CCCCCHHHHHHHCCCCCCHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf -6-789996898998299811004-379999862021123433234678585328999999899899999999630
Q gi|254781193|r 103 -N-GLPSALKAVGEALKLSSQKME-EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175 (675)
Q Consensus 103 -l-~~~~sL~~la~~l~l~~~k~~-~~k~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~Ya~~Dv~~t~~L~~~l 175 (675)
T Consensus 160 ~~~l~sy~L~~v~~~~l-~~~k~d~~~~~i~~~~~--------------~~~~~~~~~~~Y~~~D~~l~~~l~~~~ 220 (471)
T smart00486 160 KLKLPSYKLDTVAEYLL-GKEKDDLPYKDIPELYN--------------LNYKLRDELLEYCIQDAVLTLKLFNKL 220 (471)
T ss_pred HHCCCCCCHHHHHHHHH-CCCCCCCCHHHHHHHHH--------------CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 60446688899999995-77888899899999985--------------393679999999999999999999986