HHsearch alignment for GI: 254781193 and conserved domain: smart00486

>smart00486 POLBc DNA polymerase type-B family. DNA polymerase alpha, delta, epsilon and zeta chain (eukaryota), DNA polymerases in archaea, DNA polymerase II in e. coli, mitochondrial DNA polymerases and and virus DNA polymerases
Probab=98.25  E-value=0.00024  Score=46.51  Aligned_cols=155  Identities=19%  Similarity=0.169  Sum_probs=79.3

Q ss_pred             CEEEEEECCCCCCCCCCCCCHHHCCCCEEEEEEEEECCEEE--------------------EEEECCCCHHHHHHHHHHH
Q ss_conf             68999814178987000440011279819999999848039--------------------9997888104379999986
Q gi|254781193|r    2 ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV--------------------ELWDCVHDPVMPQVLKEAL   61 (675)
Q Consensus         2 k~i~lD~ET~~~~dl~~~Gl~~y~~~~~i~~i~~a~~~~~v--------------------~~~d~~~~~~~~~~l~~~L   61 (675)
T Consensus         4 ~i~s~DIEt~~~~~~---~p~~~~~~d~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~ll~~f~~~i   80 (471)
T smart00486        4 KILSFDIETYTDGGL---FPDPLIFEDEIIQISLVINDGDKKGPEERICFTLGTCKEIDGVEVYEFNNEKELLKAFLEFI   80 (471)
T ss_pred             EEEEEEEEECCCCCC---CCCCCCCCCEEEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCEEEECCCHHHHHHHHHHHH
T ss_conf             699999896679999---99988899849999999821987878877543036767789988998099999999999999


Q ss_pred             --CCCCCEEEEEEH-HHHHHHHHHH---CCCCCC--------------------------------CC-CEEEHHHHHHH
Q ss_conf             --388981999730-7749999986---089988--------------------------------42-03316889998
Q gi|254781193|r   62 --ENTDVTIVAHNS-YFERTVLKAC---FNLDIP--------------------------------IH-RWICTLVLARS  102 (675)
Q Consensus        62 --~~~~~~kV~HNa-~FD~~~L~~~---~Gi~i~--------------------------------~~-~~~DTmi~A~~  102 (675)
T Consensus        81 ~~~dpd-ii~g~N~~~FD~~yi~~R~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~D~~~~~~~  159 (471)
T smart00486       81 KKYDPD-IIYGHNISNFDLPYIISRLEKLKIKPLSFIGRLKNIIDIKRKKPLFGSKSFGKTIKVKIKGRLVIDLYNLYKN  159 (471)
T ss_pred             HHCCCC-EEEECCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCEECCCCCCCCCCCEEEEEEEEEEEEEHHHHHHH
T ss_conf             871999-9996588787689999999984896477637357787643203321012566314899855999788999988


Q ss_pred             -H-CCCCCHHHHHHHCCCCCCHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             -6-789996898998299811004-379999862021123433234678585328999999899899999999630
Q gi|254781193|r  103 -N-GLPSALKAVGEALKLSSQKME-EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL  175 (675)
Q Consensus       103 -l-~~~~sL~~la~~l~l~~~k~~-~~k~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~Ya~~Dv~~t~~L~~~l  175 (675)
T Consensus       160 ~~~l~sy~L~~v~~~~l-~~~k~d~~~~~i~~~~~--------------~~~~~~~~~~~Y~~~D~~l~~~l~~~~  220 (471)
T smart00486      160 KLKLPSYKLDTVAEYLL-GKEKDDLPYKDIPELYN--------------LNYKLRDELLEYCIQDAVLTLKLFNKL  220 (471)
T ss_pred             HHCCCCCCHHHHHHHHH-CCCCCCCCHHHHHHHHH--------------CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             60446688899999995-77888899899999985--------------393679999999999999999999986